Citrus Sinensis ID: 026963

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230
Protein Sequence
MPRYKDEPPGVRVYTVCDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYASQFESLADTKDKLETRRKEVLARLNSGRSKVPNIHSSVDLGEPSLVTAPLQPNLVSEQITSWQRASSESQRISHVNESPITRVSSDKDYFASQSMNQTVRLVREKLNKIESSTEHLQAGPASKKPRIDNRRRI
Secondary Structure (PSIPRED)
ccccccccccEEEEEEEcccEEEEEEccccccHHHHHHHHHHHccccEEEEEcccccccccccEEEEEEEccccHHHHHHHccccccccccEEEEEccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccEEEEEEEccccEEEEEccccccccHHHHHHHHHHHcccEEEcccccccccccccEEEEEHHHHHHHHHHHHHHHcccccccEEEEEEccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mprykdeppgvrvytvcdesrylivrnvpslgcgdDLLKLFATygdieeckpmdaedcdpftdvYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYASQFESLADTKDKLETRRKEVLARLNsgrskvpnihssvdlgepslvtaplqpnlvseqITSWQRASSEsqrishvnespitrvssdkdyfasqSMNQTVRLVREKLNKIESSTehlqagpaskkpridnrrri
Flexible Loop (DISEMBL)
mprykdeppgvrvytvcdesRYLIVRnvpslgcgDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKvsyasqfesladtkdkleTRRKEVLarlnsgrskvpnihssvdlgepsLVTAPLQPNLVSEQITSWQRassesqrishvnespitrvssdkdyfASQSMNQTVRLVREKLNKIesstehlqagpaskkpridnrrri
Low Complexity Region (SEG)
MPRYKDEPPGVRVYTVCDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYASQFESLADTKDKLETRRKEVLARLNSGRSKVPNIHSSVDLGEPSLVTAPLQPNLVSEQITSWQRASSESQRISHVNESPITRVSSDKDYFASQSMNQTVRLVREKLNKIESSTEHLQAGPASKKPRIDNRRRI
Disordered region (IsUnstruct)
**********VRVYTVCDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYASQF**********************************************************************************************************************************
Disordered Region (DISOPRED)
*******PPGVRVYTVCDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYASQF***************************************************************************************************************************ID*****
Disordered Region (DISEMBL)
MPRYKDEPPGVRVYTVCDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYASQFESLADTKDKLETRRKEVLARLNSGRSKVPNIHSSVDLGEPSLVTAPLQPNLVSEQ****************VNESPITRVSSDKDYFASQSMNQTVRLVREKLNKIESS*********************
Disordered Region (DISPRO)
*****DEPPGVRVYTVCDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYASQFESLADTKDKLETRRKEVLARLNS******************************************************TR*SS*KDYFASQSMNQTVRLVREKLN**************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MPRYKDEPPGVRVYTVCDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYASQFESLADTKDKLETRRKEVLARLNSGRSKVPNIHSSVDLGEPSLVTAPLQPNLVSEQITSWQRASSESQRISHVNESPITRVSSDKDYFASQSMNQTVRLVREKLNKIESSTEHLQAGPASKKPRIDNRRRI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	230	2.2.26 [Sep-21-2011]
A4FVJ7	364	RNA-binding protein 48 OS	yes	no	0.539	0.340	0.442	7e-25
Q5R4U2	367	RNA-binding protein 48 OS	yes	no	0.482	0.302	0.432	7e-21
Q5RL73	367	RNA-binding protein 48 OS	yes	no	0.482	0.302	0.432	1e-20
Q561R3	371	RNA-binding protein 48 OS	yes	no	0.465	0.288	0.439	2e-20
Q8K2X2	371	RNA-binding protein 48 OS	yes	no	0.465	0.288	0.429	5e-20
A6QPE1	362	RNA-binding protein 48 OS	yes	no	0.508	0.323	0.423	1e-19

>sp|A4FVJ7|RBM48_DANRE RNA-binding protein 48 OS=Danio rerio GN=rbm48 PE=2 SV=1

 Score =  114 bits (284), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 58/131 (44%), Positives = 88/131 (67%), Gaps = 7/131 (5%)

Query: 10  GVRVYTVCDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKF 69
            V+VYT+  ESRYL+V+ VP++G   +L++LFA YG IEE +P+D    + FT+VY I+F
Sbjct: 40  AVKVYTINLESRYLLVQGVPAIGVMAELVQLFALYGVIEEYRPLDEYPAEQFTEVYLIQF 99

Query: 70  RLFSNARFAKRKLDEFVFLGNRLKVSYASQFESLADTKDKLETRRKEV------LARLNS 123
           +  ++AR AKR  DE  F G +L V YA ++E++ +TK KL+ RR+ V       A+L+S
Sbjct: 100 QKLTSARAAKRHTDEKSFFGGQLHVCYAPEYETVEETKQKLQDRRRYVNWASQNAAKLHS 159

Query: 124 GRSKVPNIHSS 134
            +++V N  SS
Sbjct: 160 QQAEV-NTESS 169

Danio rerio (taxid: 7955)

>sp|Q5R4U2|RBM48_PONAB RNA-binding protein 48 OS=Pongo abelii GN=RBM48 PE=2 SV=1

 Score =  100 bits (250), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 48/111 (43%), Positives = 73/111 (65%)

Query: 8   PPGVRVYTVCDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFI 67
           P  V+VYT+  ES+YL+++ VP++G   +L++ FA YG IE+   +D    + FT+VY I
Sbjct: 33  PRAVKVYTINLESQYLLIQGVPAVGVMKELVERFALYGTIEQYNALDEYPAEDFTEVYLI 92

Query: 68  KFRLFSNARFAKRKLDEFVFLGNRLKVSYASQFESLADTKDKLETRRKEVL 118
           KF    +AR AKRK+DE  F G  L V YA +FE++ +T+ KL+ R+  V+
Sbjct: 93  KFMNLQSARAAKRKMDEQSFFGGLLHVCYAPEFETVEETRKKLQVRKAYVV 143

Pongo abelii (taxid: 9601)

>sp|Q5RL73|RBM48_HUMAN RNA-binding protein 48 OS=Homo sapiens GN=RBM48 PE=2 SV=1

 Score =  100 bits (248), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 48/111 (43%), Positives = 73/111 (65%)

Query: 8   PPGVRVYTVCDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFI 67
           P  V+VYT+  ES+YL+++ VP++G   +L++ FA YG IE+   +D    + FT+VY I
Sbjct: 33  PRAVKVYTINLESQYLLIQGVPAVGVMKELVERFALYGAIEQYNALDEYPAEDFTEVYLI 92

Query: 68  KFRLFSNARFAKRKLDEFVFLGNRLKVSYASQFESLADTKDKLETRRKEVL 118
           KF    +AR AKRK+DE  F G  L V YA +FE++ +T+ KL+ R+  V+
Sbjct: 93  KFMNLQSARTAKRKMDEQSFFGGLLHVCYAPEFETVEETRKKLQMRKAYVV 143

Homo sapiens (taxid: 9606)

>sp|Q561R3|RBM48_RAT RNA-binding protein 48 OS=Rattus norvegicus GN=Rbm48 PE=2 SV=1

 Score = 99.0 bits (245), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 47/107 (43%), Positives = 71/107 (66%)

Query: 8   PPGVRVYTVCDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFI 67
           P  V+VYT+  ES+YL+++ VP++G   +L++ FA YG IE+   +D    + FT+VY I
Sbjct: 33  PRAVKVYTINLESQYLLIQGVPAVGAMKELVERFALYGAIEQYNALDEYPAEDFTEVYLI 92

Query: 68  KFRLFSNARFAKRKLDEFVFLGNRLKVSYASQFESLADTKDKLETRR 114
           KF    +AR AK+K+DE  F G  L V YA +FE++ +T+ KLE R+
Sbjct: 93  KFVKLQSARIAKKKMDEQSFFGGLLHVCYAPEFETVEETRKKLEERK 139

Rattus norvegicus (taxid: 10116)

>sp|Q8K2X2|RBM48_MOUSE RNA-binding protein 48 OS=Mus musculus GN=Rbm48 PE=2 SV=2

 Score = 97.8 bits (242), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 46/107 (42%), Positives = 71/107 (66%)

Query: 8   PPGVRVYTVCDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFI 67
           P  V+VYT+  ES+YL+++ VP++G   +L++ FA YG IE+   +D    + FT+VY I
Sbjct: 33  PRAVKVYTINLESQYLLIQGVPAVGAMKELVERFALYGAIEQYNALDEYPAEDFTEVYLI 92

Query: 68  KFRLFSNARFAKRKLDEFVFLGNRLKVSYASQFESLADTKDKLETRR 114
           KF    +AR AK+K+DE  F G  L V YA +FE++ +T+ KL+ R+
Sbjct: 93  KFVKLQSARVAKKKMDEQSFFGGLLHVCYAPEFETVEETRKKLQERK 139

Mus musculus (taxid: 10090)

>sp|A6QPE1|RBM48_BOVIN RNA-binding protein 48 OS=Bos taurus GN=RBM48 PE=2 SV=2

 Score = 96.7 bits (239), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 50/118 (42%), Positives = 73/118 (61%), Gaps = 1/118 (0%)

Query: 8   PPGVRVYTVCDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFI 67
           P  V+VYT+  ES YL+++ VP++G   +L++ FA YG IE+   +D    + FT+VY I
Sbjct: 33  PRAVKVYTINLESWYLLIQGVPAVGAMKELVERFALYGTIEQYNALDEYPAEDFTEVYLI 92

Query: 68  KFRLFSNARFAKRKLDEFVFLGNRLKVSYASQFESLADTKDKLETRRKEVLARLNSGR 125
           KF    +AR AKRK+DE  F G  L V YA +FE++ +T+ KL  R   V AR+   +
Sbjct: 93  KFLNLQSARIAKRKMDEQSFFGGLLHVCYAPEFETVEETRKKLRERNAYV-ARMTKNK 149

Bos taurus (taxid: 9913)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	230
225425581	230	PREDICTED: UPF0712 protein C7orf64 homol	1.0	1.0	0.730	1e-94
147822223	230	hypothetical protein VITISV_032503 [Viti	1.0	1.0	0.721	2e-93
224104821	234	predicted protein [Populus trichocarpa]	0.991	0.974	0.689	2e-86
255568772	216	nucleic acid binding protein, putative [	0.939	1.0	0.673	2e-82
449500316	258	PREDICTED: RNA-binding protein 48-like [	0.978	0.872	0.662	8e-81
449450450	258	PREDICTED: RNA-binding protein 48-like [	0.982	0.875	0.652	5e-80
357491921	222	hypothetical protein MTR_5g077780 [Medic	0.956	0.990	0.668	5e-79
217074488	222	unknown [Medicago truncatula] gi|3884921	0.956	0.990	0.668	7e-79
388498952	222	unknown [Lotus japonicus]	0.965	1.0	0.656	2e-77
356545433	221	PREDICTED: UPF0712 protein C7orf64 homol	0.943	0.981	0.632	1e-75

>gi|225425581|ref|XP_002263764.1| PREDICTED: UPF0712 protein C7orf64 homolog [Vitis vinifera] gi|297739067|emb|CBI28556.3| unnamed protein product [Vitis vinifera]

 Score =  351 bits (900), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 168/230 (73%), Positives = 196/230 (85%)

Query: 1   MPRYKDEPPGVRVYTVCDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDP 60
           M + +DEPP VRVYT+CDESRYLIVRNVP+LGCGDDLL LFA+YGDIEECKPMDAEDC+P
Sbjct: 1   MTQNRDEPPAVRVYTICDESRYLIVRNVPALGCGDDLLNLFASYGDIEECKPMDAEDCEP 60

Query: 61  FTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYASQFESLADTKDKLETRRKEVLAR 120
           FTDVY+IKFRL SNARFAKRKLDEFVFLGNRLKV YA  FESL+DTK+KLE RRKEVL+R
Sbjct: 61  FTDVYWIKFRLVSNARFAKRKLDEFVFLGNRLKVEYAPHFESLSDTKEKLEGRRKEVLSR 120

Query: 121 LNSGRSKVPNIHSSVDLGEPSLVTAPLQPNLVSEQITSWQRASSESQRISHVNESPITRV 180
           LN GRSK+P +H+   LGEP LV  P Q N +S+Q++  QR S ES  +S + +S IT V
Sbjct: 121 LNPGRSKMPTVHNPDALGEPLLVKNPSQTNCISKQMSFNQRISGESDHVSRIKDSSITTV 180

Query: 181 SSDKDYFASQSMNQTVRLVREKLNKIESSTEHLQAGPASKKPRIDNRRRI 230
           SS++DYF S SMNQTVRLVREKL+KI+SS++HL+AGPA KK R+DNRRRI
Sbjct: 181 SSNQDYFGSPSMNQTVRLVREKLDKIQSSSQHLEAGPAFKKTRVDNRRRI 230

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147822223|emb|CAN63941.1| hypothetical protein VITISV_032503 [Vitis vinifera]

 Score =  347 bits (891), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 166/230 (72%), Positives = 194/230 (84%)

Query: 1   MPRYKDEPPGVRVYTVCDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDP 60
           M + +DEPP VRVYT+CDESRYLIVRNVP+LGCGDDLL LFA+YGDIEECKPMDAEDC+P
Sbjct: 1   MTQNRDEPPAVRVYTICDESRYLIVRNVPALGCGDDLLNLFASYGDIEECKPMDAEDCEP 60

Query: 61  FTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYASQFESLADTKDKLETRRKEVLAR 120
           FTDVY+ KFRL SNARFAKRKLDEFVFLGNRLK  YA  FESL+DTK+KLE RRKEVL+R
Sbjct: 61  FTDVYWXKFRLVSNARFAKRKLDEFVFLGNRLKAEYAPHFESLSDTKEKLEGRRKEVLSR 120

Query: 121 LNSGRSKVPNIHSSVDLGEPSLVTAPLQPNLVSEQITSWQRASSESQRISHVNESPITRV 180
           LN GRSK+P +H+   LGEP LV  P Q N +S+Q++  QR S ES  +S + +S IT V
Sbjct: 121 LNPGRSKMPTVHNPDALGEPLLVKNPSQTNCISKQMSFNQRISGESDHVSRIKDSSITTV 180

Query: 181 SSDKDYFASQSMNQTVRLVREKLNKIESSTEHLQAGPASKKPRIDNRRRI 230
           SS++DYF S SMNQTVRLVREKL+KI+SS++HL+AGPA KK R+DNRRRI
Sbjct: 181 SSNQDYFGSPSMNQTVRLVREKLDKIQSSSQHLEAGPAFKKTRVDNRRRI 230

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224104821|ref|XP_002313579.1| predicted protein [Populus trichocarpa] gi|222849987|gb|EEE87534.1| predicted protein [Populus trichocarpa]

 Score =  324 bits (831), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 162/235 (68%), Positives = 191/235 (81%), Gaps = 7/235 (2%)

Query: 1   MPRYKD----EPPGVRVYTVCDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAE 56
           +PR +D     P  VRVYTVCDESRYLIVRNVP+LGCGDDL KLFA+YGD+EECKPMDAE
Sbjct: 2   LPRNRDCSPPHPTVVRVYTVCDESRYLIVRNVPALGCGDDLFKLFASYGDVEECKPMDAE 61

Query: 57  DCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYASQFESLADTKDKLETRRKE 116
           DC+ FTDVY+IKFRL SNARFAKRKLDE +FLGN L+VSYA  FE+++DTKDKLE RRKE
Sbjct: 62  DCEQFTDVYWIKFRLVSNARFAKRKLDESIFLGNPLQVSYAPHFETVSDTKDKLEGRRKE 121

Query: 117 VLARLNSGRSKVPNIHSSVDLGEPSLVTAPLQPNLVSEQITSWQRA-SSESQRISHVNES 175
           V ARLN GR+K P +H++    + SL+T+  Q + VS+ + S Q   S ESQ +  + + 
Sbjct: 122 VFARLNPGRTKGPKVHNAGTSSQASLLTS--QIDHVSQHLNSNQSWDSGESQNVHQIGDP 179

Query: 176 PITRVSSDKDYFASQSMNQTVRLVREKLNKIESSTEHLQAGPASKKPRIDNRRRI 230
           PITRVSSD+DYF SQSMNQTVRLVREKLNKI+SS+EHLQAGP SKK R+DNRRRI
Sbjct: 180 PITRVSSDQDYFPSQSMNQTVRLVREKLNKIQSSSEHLQAGPVSKKARVDNRRRI 234

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255568772|ref|XP_002525357.1| nucleic acid binding protein, putative [Ricinus communis] gi|223535320|gb|EEF36995.1| nucleic acid binding protein, putative [Ricinus communis]

 Score =  310 bits (795), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 155/230 (67%), Positives = 182/230 (79%), Gaps = 14/230 (6%)

Query: 1   MPRYKDEPPGVRVYTVCDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDP 60
           MPRYKDE P +RVYT+CDESRYLIVRNVP+LGCGDDLLKLFA+YGD+E+ KPMDAEDCD 
Sbjct: 1   MPRYKDEAPAIRVYTICDESRYLIVRNVPALGCGDDLLKLFASYGDVEDFKPMDAEDCDQ 60

Query: 61  FTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYASQFESLADTKDKLETRRKEVLAR 120
           FTDVY+IKF L  NARFAKRKLDE+VF+GNRL+VSYA  FE+L+DTKDKLE R KEVL+R
Sbjct: 61  FTDVYWIKFSLVCNARFAKRKLDEYVFMGNRLQVSYAPHFETLSDTKDKLEGRIKEVLSR 120

Query: 121 LNSGRSKVPNIHSSVDLGEPSLVTAPLQPNLVSEQITSWQRASSESQRISHVNESPITRV 180
           LN GRSK   + +     E SL+ A              + A S+  + S +N+ PITRV
Sbjct: 121 LNPGRSKGSRVQNPGASNEASLLAA-------------VESAGSQHNK-SQINDPPITRV 166

Query: 181 SSDKDYFASQSMNQTVRLVREKLNKIESSTEHLQAGPASKKPRIDNRRRI 230
           SS+++YF SQSMNQTV LVREKLNKI+SS+EHLQA PASKK R+DNRRRI
Sbjct: 167 SSNQEYFPSQSMNQTVSLVREKLNKIQSSSEHLQAVPASKKSRVDNRRRI 216

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449500316|ref|XP_004161064.1| PREDICTED: RNA-binding protein 48-like [Cucumis sativus]

 Score =  305 bits (781), Expect = 8e-81,   Method: Compositional matrix adjust.
 Identities = 153/231 (66%), Positives = 187/231 (80%), Gaps = 6/231 (2%)

Query: 1   MPRYKDEPPGVRVYTVCDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDP 60
           MP ++DE   VR YTVCDESRYLIVRNVP+LGCGDDL KLF++YG++EECKPMDAE+CD 
Sbjct: 33  MPCFRDESLAVRAYTVCDESRYLIVRNVPALGCGDDLHKLFSSYGNLEECKPMDAEECDE 92

Query: 61  FTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYASQFESLADTKDKLETRRKEVLAR 120
           FTDVYF+KF L +NARFAKRKLDEFVFLGNRL+VSYA +FESL DTK+KLE RR+EVLAR
Sbjct: 93  FTDVYFVKFHLVTNARFAKRKLDEFVFLGNRLQVSYAPEFESLLDTKEKLEVRRREVLAR 152

Query: 121 LNSGRSKVPNIHSSVDLGEPSLVTAPLQPNLVSEQITSWQ-RASSESQRISHVNESPITR 179
           L+SGR +   + S+      + +T P + +   +Q  S + R   ++  IS+ + S ITR
Sbjct: 153 LDSGRPRGTAVSSTT-----AKLTNPSRSHYTLKQKNSLEKRNYGDAALISNPHVSQITR 207

Query: 180 VSSDKDYFASQSMNQTVRLVREKLNKIESSTEHLQAGPASKKPRIDNRRRI 230
           VSSD+DYFAS+SMNQTV LVREKL+KI+SS+EHLQAGPASKK R+DNRRRI
Sbjct: 208 VSSDQDYFASESMNQTVHLVREKLDKIQSSSEHLQAGPASKKSRMDNRRRI 258

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449450450|ref|XP_004142975.1| PREDICTED: RNA-binding protein 48-like [Cucumis sativus]

 Score =  303 bits (775), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 150/230 (65%), Positives = 183/230 (79%), Gaps = 4/230 (1%)

Query: 1   MPRYKDEPPGVRVYTVCDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDP 60
           MP ++DE   VR YTVCDESRYLIVRNVP+LGCGDDL KLF++YG++EECKPMDAE+CD 
Sbjct: 33  MPCFRDESLAVRAYTVCDESRYLIVRNVPALGCGDDLHKLFSSYGNLEECKPMDAEECDE 92

Query: 61  FTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYASQFESLADTKDKLETRRKEVLAR 120
           FTDVYF+KF L +NARFAKRKLDEFVFLGNRL+VSYA +FESL DTK+KLE RR+EVLAR
Sbjct: 93  FTDVYFVKFHLVTNARFAKRKLDEFVFLGNRLQVSYAPEFESLLDTKEKLEVRRREVLAR 152

Query: 121 LNSGRSKVPNIHSSVDLGEPSLVTAPLQPNLVSEQITSWQRASSESQRISHVNESPITRV 180
           L+SGR +   + S+       L         + ++ +  +R   ++  IS+ + S ITRV
Sbjct: 153 LDSGRPRGTAVSSTT----AKLTNQSRSHYTLKQKNSLEKRNYGDAALISNPHVSQITRV 208

Query: 181 SSDKDYFASQSMNQTVRLVREKLNKIESSTEHLQAGPASKKPRIDNRRRI 230
           SSD+DYFAS+SMNQTV LVREKL+KI+SS+EHLQAGPASKK R+DNRRRI
Sbjct: 209 SSDQDYFASESMNQTVHLVREKLDKIQSSSEHLQAGPASKKSRMDNRRRI 258

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357491921|ref|XP_003616248.1| hypothetical protein MTR_5g077780 [Medicago truncatula] gi|355517583|gb|AES99206.1| hypothetical protein MTR_5g077780 [Medicago truncatula]

 Score =  299 bits (766), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 155/232 (66%), Positives = 180/232 (77%), Gaps = 12/232 (5%)

Query: 1   MPRYKDEPPGVRVYTVCDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDP 60
           MPRYKDE P VRVYTVCDESRYLIVRNVP+LGCG+DL++LF+TYG++EECKPMDAEDC+ 
Sbjct: 1   MPRYKDESPAVRVYTVCDESRYLIVRNVPALGCGNDLMQLFSTYGEVEECKPMDAEDCEQ 60

Query: 61  FTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYASQFESLADTKDKLETRRKEVLAR 120
           FTDVY+IKF LFSNARFAKRKLDEFVFLGNRL+VSYA  FESL+DTKDKLE RRKEVLAR
Sbjct: 61  FTDVYWIKFHLFSNARFAKRKLDEFVFLGNRLQVSYAPHFESLSDTKDKLEGRRKEVLAR 120

Query: 121 LNSGRSKVPNIHSSVDL--GEPSLVTAPLQPNLVSEQITSWQRASSESQRISHVNESPIT 178
           LN  R K     SS  L     S  +  L PN          ++S E +  S+ +  P  
Sbjct: 121 LNPRRPKDTIASSSRPLITSNTSCQSEHLDPN----------QSSQEFEVRSNNSNLPKR 170

Query: 179 RVSSDKDYFASQSMNQTVRLVREKLNKIESSTEHLQAGPASKKPRIDNRRRI 230
            VSS++DYF+S SMNQTVR+VR+KL+KI+SS EHLQAG  SKK R+DNRRRI
Sbjct: 171 TVSSNEDYFSSHSMNQTVRVVRDKLDKIQSSGEHLQAGSTSKKARVDNRRRI 222

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217074488|gb|ACJ85604.1| unknown [Medicago truncatula] gi|388492174|gb|AFK34153.1| unknown [Medicago truncatula] gi|388516031|gb|AFK46077.1| unknown [Medicago truncatula]

 Score =  299 bits (765), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 155/232 (66%), Positives = 179/232 (77%), Gaps = 12/232 (5%)

Query: 1   MPRYKDEPPGVRVYTVCDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDP 60
           MPRYKDE P VRVYTVCDESRYLIVRNVP+LGCG+DL++LF+TYG++EECKPMDAEDC+ 
Sbjct: 1   MPRYKDESPAVRVYTVCDESRYLIVRNVPALGCGNDLMQLFSTYGEVEECKPMDAEDCEQ 60

Query: 61  FTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYASQFESLADTKDKLETRRKEVLAR 120
           FTDVY+IKF LFSNARFAKRKLDEFVFLGNRL+VSYA  FESL+DTKDKLE RRKEVLAR
Sbjct: 61  FTDVYWIKFHLFSNARFAKRKLDEFVFLGNRLQVSYAPHFESLSDTKDKLEGRRKEVLAR 120

Query: 121 LNSGRSKVPNIHSSVDL--GEPSLVTAPLQPNLVSEQITSWQRASSESQRISHVNESPIT 178
           LN  R K     SS  L     S  +  L PN          ++S E +  S+ +  P  
Sbjct: 121 LNPRRPKDTIASSSRPLITSNTSCQSEHLDPN----------QSSQEFEVRSNNSNLPKR 170

Query: 179 RVSSDKDYFASQSMNQTVRLVREKLNKIESSTEHLQAGPASKKPRIDNRRRI 230
            VSS++DYF+S SMNQTVR+VR KL+KI+SS EHLQAG  SKK R+DNRRRI
Sbjct: 171 TVSSNEDYFSSHSMNQTVRVVRAKLDKIQSSGEHLQAGSTSKKARVDNRRRI 222

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388498952|gb|AFK37542.1| unknown [Lotus japonicus]

 Score =  294 bits (752), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 151/230 (65%), Positives = 179/230 (77%), Gaps = 8/230 (3%)

Query: 1   MPRYKDEPPGVRVYTVCDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDP 60
           MPRYKDE P V VYTVCDESRYLIVRNVP+LGCGDDL +LF++YG+IEEC PMDAEDC+P
Sbjct: 1   MPRYKDESPAVCVYTVCDESRYLIVRNVPALGCGDDLRQLFSSYGEIEECHPMDAEDCEP 60

Query: 61  FTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYASQFESLADTKDKLETRRKEVLAR 120
           FTDVY+IKFRLF+NARFAKRKLD+FVFLGNRL+VSYA  FESL+DTKDKLE RR+EVLAR
Sbjct: 61  FTDVYWIKFRLFNNARFAKRKLDDFVFLGNRLQVSYAPHFESLSDTKDKLEGRRREVLAR 120

Query: 121 LNSGRSKVPNIHSSVDLGEPSLVTAPLQPNLVSEQITSWQRASSESQRISHVNESPITRV 180
           LN  R +V     S     PS+ +   +   +SE +   +R  +   R SH        V
Sbjct: 121 LNPRRPQVTAASGS----RPSITS---KTTSLSENLDHTERDLAFEGR-SHNGNLQKRTV 172

Query: 181 SSDKDYFASQSMNQTVRLVREKLNKIESSTEHLQAGPASKKPRIDNRRRI 230
           SS++DYFAS SMNQTV++VR+KL+KI+SS EHLQ GP SKK R+DNRRRI
Sbjct: 173 SSNEDYFASHSMNQTVKVVRDKLDKIQSSGEHLQDGPVSKKSRVDNRRRI 222

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356545433|ref|XP_003541147.1| PREDICTED: UPF0712 protein C7orf64 homolog [Glycine max]

 Score =  288 bits (737), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 148/234 (63%), Positives = 177/234 (75%), Gaps = 17/234 (7%)

Query: 1   MPRYKDEPPGVRVYTVCDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDP 60
           MPRYKDE P VRVYTVCDESRYLIVRNVP LGCGD+LLKLF++YG++EECKPMDAEDC+ 
Sbjct: 1   MPRYKDESPAVRVYTVCDESRYLIVRNVPELGCGDELLKLFSSYGEVEECKPMDAEDCEK 60

Query: 61  FTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYASQFESLADTKDKLETRRKEVLAR 120
           +TDV++IKFRL +NARFAKRKLD+FVF GN+L+VSYA QFESL+DT DKLE RR+EVLAR
Sbjct: 61  YTDVFWIKFRLVNNARFAKRKLDDFVFFGNKLQVSYAPQFESLSDTMDKLEGRRREVLAR 120

Query: 121 LNSGRSKVPNIHSSVDLGEPSLVTAPLQPNLVSEQITSWQRASS----ESQRISHVNESP 176
           LN  RSK     SS             +P + S+   S    S+    E +  SH    P
Sbjct: 121 LNPRRSKETTASSS-------------KPRITSKTNCSQHLDSNARDVELKGGSHSGNFP 167

Query: 177 ITRVSSDKDYFASQSMNQTVRLVREKLNKIESSTEHLQAGPASKKPRIDNRRRI 230
           I  VSS++DYFAS SMNQTV LVR+KL+KI+SS E+ +AG ASKK R+DNR+RI
Sbjct: 168 IRMVSSNEDYFASNSMNQTVSLVRDKLDKIQSSGENTKAGSASKKQRVDNRKRI 221

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	230
TAIR|locus:2042067	240	AT2G27790 [Arabidopsis thalian	0.943	0.904	0.603	2.5e-65
TAIR|locus:2146410	575	AT5G27300 "AT5G27300" [Arabido	0.878	0.351	0.488	5.6e-45
UNIPROTKB|Q5F3S8	350	RBM48 "Uncharacterized protein	0.521	0.342	0.434	5.2e-28
ZFIN|ZDB-GENE-060328-1	364	rbm48 "RNA binding motif prote	0.573	0.362	0.425	1.5e-26
UNIPROTKB|F1PAA0	367	RBM48 "Uncharacterized protein	0.530	0.332	0.416	5.6e-25
UNIPROTKB|F1SFC8	367	RBM48 "Uncharacterized protein	0.530	0.332	0.416	1.5e-24
RGD|1310794	371	Rbm48 "RNA binding motif prote	0.530	0.328	0.4	2.4e-24
UNIPROTKB|Q5RL73	367	RBM48 "RNA-binding protein 48"	0.504	0.316	0.415	1e-23
UNIPROTKB|A6QPE1	362	RBM48 "RNA-binding protein 48"	0.530	0.337	0.408	1.2e-23
MGI|MGI:2442653	371	Rbm48 "RNA binding motif prote	0.530	0.328	0.392	2.9e-23

TAIR|locus:2042067 AT2G27790 [Arabidopsis thaliana (taxid:3702)]

 Score = 665 (239.2 bits), Expect = 2.5e-65, P = 2.5e-65
 Identities = 140/232 (60%), Positives = 168/232 (72%)

Query:     1 MPRYKDEPPGVRVYTVCDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDP 60
             M RYKDE P VRVYTVCDESRY+IVRNVP+LGCGDDL++LF TYG++EECKPMDAEDC  
Sbjct:     1 MGRYKDETPAVRVYTVCDESRYMIVRNVPALGCGDDLMRLFMTYGEVEECKPMDAEDCAE 60

Query:    61 FTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYASQFESLADTKDKLETRRKEVLAR 120
             FTDVY+IKFRL +NARFAKRKLDE  FLGNRL++SYA ++E++ DTKDKLE+RRKEVLAR
Sbjct:    61 FTDVYWIKFRLITNARFAKRKLDESSFLGNRLQISYAPEYENVNDTKDKLESRRKEVLAR 120

Query:   121 LNSGRSKVPNIHSSVDLGEPSLVTAPLQPNLVSEQITSWQRASSESQRISHVNESPITRV 180
             LN  + K             S VT    P L      S QR   E Q   H   +P+TRV
Sbjct:   121 LNPQKEK-----------STSQVTKLAGPALTQTDNVSSQRREMEYQ--FHRGNAPVTRV 167

Query:   181 SSDKDYFASQSMNQTVRLVREKLNKIESSTEHLQAGPASK-KPRID-NRRRI 230
             SSD++YFAS SMNQTV+ VREKLNKIE S    +  P+S+ +P    N++R+
Sbjct:   168 SSDQEYFASSSMNQTVKTVREKLNKIEESGNQKRLQPSSQTQPEESGNQKRL 219

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2146410 AT5G27300 "AT5G27300" [Arabidopsis thaliana (taxid:3702)]

 Score = 473 (171.6 bits), Expect = 5.6e-45, P = 5.6e-45
 Identities = 107/219 (48%), Positives = 144/219 (65%)

Query:    15 TVCDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSN 74
             +VCDESRY+IVRNVP+LGCGDDL++LF TYG++EECKPMDAEDC  FTDVY+IKFRL +N
Sbjct:   371 SVCDESRYMIVRNVPALGCGDDLMRLFMTYGEVEECKPMDAEDCAEFTDVYWIKFRLITN 430

Query:    75 ARFAKRKLDEFVFLGNRLKVSYASQFESLADTKDKLETRRKEVLARLNSGRSKVPNIHSS 134
             AR    KLDE  FLGNRL++SYA ++ES++DTK+KLETRRKEVLARLN  ++K  +    
Sbjct:   431 AR----KLDESSFLGNRLQISYAPEYESVSDTKEKLETRRKEVLARLNPHKAK--STSQV 484

Query:   135 VDLGEPSLV-TAPLQPNLVSEQITSWQRASSESQRISHVNESPITRVSSDKDYFASQSMN 193
               L  P+L  T    P    E    + R ++   R+S   E      SS  +    +++ 
Sbjct:   485 TKLAGPALTQTDNFSPRR-REMDYQFHRGNAPVTRVSSYQEY---FASSSMNQMV-KTVR 539

Query:   194 QTVRLVREKLN--KIESSTEHLQAGPASKKPRIDNRRRI 230
             + +  + E  N  +++ S+   Q  P  K+ R+DNRRRI
Sbjct:   540 EKLNKIEESGNQKRLQPSS---QTQPDFKRTRVDNRRRI 575

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q5F3S8 RBM48 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 260 (96.6 bits), Expect = 5.2e-28, Sum P(2) = 5.2e-28
 Identities = 53/122 (43%), Positives = 80/122 (65%)

Query:     3 RYKD--EPPGVRVYTVCDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDP 60
             +Y++   P  V+VYT+  ESRYL+++ VP+LG   +L++ FA YG IEE   +D    + 
Sbjct:    27 KYREGRRPRAVKVYTINLESRYLLIQGVPALGVMKELVEQFALYGAIEEYHALDEYPAEQ 86

Query:    61 FTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYASQFESLADTKDKLETRRKEVLAR 120
             FT+VY IKF+    AR AK+K+DE  F G+ L V YA +FE++ +T++KL+ RRK +   
Sbjct:    87 FTEVYLIKFQNLQCARVAKKKMDERSFFGSLLHVCYAPEFETVQETREKLQDRRKYIAKA 146

Query:   121 LN 122
              N
Sbjct:   147 TN 148

GO:0005634 "nucleus" evidence=IEA

ZFIN|ZDB-GENE-060328-1 rbm48 "RNA binding motif protein 48" [Danio rerio (taxid:7955)]

 Score = 267 (99.0 bits), Expect = 1.5e-26, Sum P(2) = 1.5e-26
 Identities = 60/141 (42%), Positives = 93/141 (65%)

Query:     2 PRYKD--EPPGVRVYTVCDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCD 59
             P+Y++      V+VYT+  ESRYL+V+ VP++G   +L++LFA YG IEE +P+D    +
Sbjct:    30 PKYREGRRLKAVKVYTINLESRYLLVQGVPAIGVMAELVQLFALYGVIEEYRPLDEYPAE 89

Query:    60 PFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYASQFESLADTKDKLETRRKEV-- 117
              FT+VY I+F+  ++AR AKR  DE  F G +L V YA ++E++ +TK KL+ RR+ V  
Sbjct:    90 QFTEVYLIQFQKLTSARAAKRHTDEKSFFGGQLHVCYAPEYETVEETKQKLQDRRRYVNW 149

Query:   118 ----LARLNSGRSKVPNIHSS 134
                  A+L+S +++V N  SS
Sbjct:   150 ASQNAAKLHSQQAEV-NTESS 169

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

UNIPROTKB|F1PAA0 RBM48 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 250 (93.1 bits), Expect = 5.6e-25, Sum P(2) = 5.6e-25
 Identities = 52/125 (41%), Positives = 79/125 (63%)

Query:     3 RYKD--EPPGVRVYTVCDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDP 60
             +Y++   P  V+VYT+  ESRYL+++ VP++G   +L++ FA YG IE+   +D    + 
Sbjct:    26 KYREGRRPRAVKVYTINLESRYLLIQGVPAVGAMKELVERFALYGAIEQYNALDEYPAED 85

Query:    61 FTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYASQFESLADTKDKLETRRKEVLAR 120
             FT+VY IKF    +AR AKRK+DE  F G  L V YA +FE++ +T+ KL+  RK  +AR
Sbjct:    86 FTEVYLIKFMNLQSARTAKRKMDEQSFFGGLLHVCYAPEFETVEETRKKLQ-ERKAYIAR 144

Query:   121 LNSGR 125
                 +
Sbjct:   145 TTKNK 149

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|F1SFC8 RBM48 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 249 (92.7 bits), Expect = 1.5e-24, Sum P(2) = 1.5e-24
 Identities = 52/125 (41%), Positives = 78/125 (62%)

Query:     3 RYKD--EPPGVRVYTVCDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDP 60
             +Y++   P  VRVYT+  ESRYL+++ VP++G   +L++ FA YG IE+   +D    + 
Sbjct:    26 KYREGRRPRAVRVYTINLESRYLLIQGVPAVGAMKELVERFALYGAIEQYNALDEYPAED 85

Query:    61 FTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYASQFESLADTKDKLETRRKEVLAR 120
             FT+VY IKF    +AR AKRK+DE  F G  L V YA +FE++ +T+ KL+  R   +AR
Sbjct:    86 FTEVYLIKFLNLQSARIAKRKMDEQSFFGGLLHVCYAPEFETVEETRKKLQ-ERNAYIAR 144

Query:   121 LNSGR 125
                 +
Sbjct:   145 TTKNK 149

GO:0005634 "nucleus" evidence=IEA

RGD|1310794 Rbm48 "RNA binding motif protein 48" [Rattus norvegicus (taxid:10116)]

 Score = 245 (91.3 bits), Expect = 2.4e-24, Sum P(2) = 2.4e-24
 Identities = 50/125 (40%), Positives = 80/125 (64%)

Query:     3 RYKD--EPPGVRVYTVCDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDP 60
             +Y++   P  V+VYT+  ES+YL+++ VP++G   +L++ FA YG IE+   +D    + 
Sbjct:    26 KYREGRRPRAVKVYTINLESQYLLIQGVPAVGAMKELVERFALYGAIEQYNALDEYPAED 85

Query:    61 FTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYASQFESLADTKDKLETRRKEVLAR 120
             FT+VY IKF    +AR AK+K+DE  F G  L V YA +FE++ +T+ KLE  RK  ++R
Sbjct:    86 FTEVYLIKFVKLQSARIAKKKMDEQSFFGGLLHVCYAPEFETVEETRKKLE-ERKAYISR 144

Query:   121 LNSGR 125
             +   +
Sbjct:   145 VTKNQ 149

GO:0003723 "RNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA;ISO

GO:0005730 "nucleolus" evidence=ISO

UNIPROTKB|Q5RL73 RBM48 "RNA-binding protein 48" [Homo sapiens (taxid:9606)]

 Score = 242 (90.2 bits), Expect = 1.0e-23, Sum P(2) = 1.0e-23
 Identities = 49/118 (41%), Positives = 77/118 (65%)

Query:     3 RYKD--EPPGVRVYTVCDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDP 60
             +Y++   P  V+VYT+  ES+YL+++ VP++G   +L++ FA YG IE+   +D    + 
Sbjct:    26 KYREGRRPRAVKVYTINLESQYLLIQGVPAVGVMKELVERFALYGAIEQYNALDEYPAED 85

Query:    61 FTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYASQFESLADTKDKLETRRKEVL 118
             FT+VY IKF    +AR AKRK+DE  F G  L V YA +FE++ +T+ KL+ R+  V+
Sbjct:    86 FTEVYLIKFMNLQSARTAKRKMDEQSFFGGLLHVCYAPEFETVEETRKKLQMRKAYVV 143

GO:0003723 "RNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

UNIPROTKB|A6QPE1 RBM48 "RNA-binding protein 48" [Bos taurus (taxid:9913)]

 Score = 240 (89.5 bits), Expect = 1.2e-23, Sum P(2) = 1.2e-23
 Identities = 51/125 (40%), Positives = 77/125 (61%)

Query:     3 RYKD--EPPGVRVYTVCDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDP 60
             +Y++   P  V+VYT+  ES YL+++ VP++G   +L++ FA YG IE+   +D    + 
Sbjct:    26 KYREGRRPRAVKVYTINLESWYLLIQGVPAVGAMKELVERFALYGTIEQYNALDEYPAED 85

Query:    61 FTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYASQFESLADTKDKLETRRKEVLAR 120
             FT+VY IKF    +AR AKRK+DE  F G  L V YA +FE++ +T+ KL  R   V AR
Sbjct:    86 FTEVYLIKFLNLQSARIAKRKMDEQSFFGGLLHVCYAPEFETVEETRKKLRERNAYV-AR 144

Query:   121 LNSGR 125
             +   +
Sbjct:   145 MTKNK 149

GO:0005634 "nucleus" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

MGI|MGI:2442653 Rbm48 "RNA binding motif protein 48" [Mus musculus (taxid:10090)]

 Score = 240 (89.5 bits), Expect = 2.9e-23, Sum P(2) = 2.9e-23
 Identities = 49/125 (39%), Positives = 79/125 (63%)

Query:     3 RYKD--EPPGVRVYTVCDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDP 60
             +Y++   P  V+VYT+  ES+YL+++ VP++G   +L++ FA YG IE+   +D    + 
Sbjct:    26 KYREGRRPRAVKVYTINLESQYLLIQGVPAVGAMKELVERFALYGAIEQYNALDEYPAED 85

Query:    61 FTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYASQFESLADTKDKLETRRKEVLAR 120
             FT+VY IKF    +AR AK+K+DE  F G  L V YA +FE++ +T+ KL+  RK  + R
Sbjct:    86 FTEVYLIKFVKLQSARVAKKKMDEQSFFGGLLHVCYAPEFETVEETRKKLQ-ERKAYITR 144

Query:   121 LNSGR 125
             +   +
Sbjct:   145 VTKNQ 149

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0003723 "RNA binding" evidence=IEA

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00002741001 SubName- Full=Chromosome chr1 scaffold_135, whole genome shotgun sequence; (230 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	230
cd12442	100	cd12442, RRM_RBM48, RNA recognition motif in RNA-b	4e-53
pfam13893	56	pfam13893, RRM_5, RNA recognition motif	6e-08
cd00590	72	cd00590, RRM_SF, RNA recognition motif (RRM) super	1e-06
pfam14259	69	pfam14259, RRM_6, RNA recognition motif (a	5e-06
cd12375	77	cd12375, RRM1_Hu_like, RNA recognition motif 1 in	1e-05
cd12359	76	cd12359, RRM2_VICKZ, RNA recognition motif 2 in th	1e-05
smart00360	73	smart00360, RRM, RNA recognition motif	4e-05
pfam00076	70	pfam00076, RRM_1, RNA recognition motif	7e-05
cd12567	79	cd12567, RRM3_RBM19, RNA recognition motif 3 in RN	9e-04
cd12316	74	cd12316, RRM3_RBM19_RRM2_MRD1, RNA recognition mot	0.002
cd12390	92	cd12390, RRM3_RAVER, RNA recognition motif 3 in ri	0.002
cd12566	79	cd12566, RRM2_MRD1, RNA recognition motif 2 in yea	0.003
cd12238	73	cd12238, RRM1_RBM40_like, RNA recognition motif 1	0.004

>gnl|CDD|240888 cd12442, RRM_RBM48, RNA recognition motif in RNA-binding protein 48 (RBM48) and similar proteins

 Score =  165 bits (421), Expect = 4e-53
 Identities = 55/100 (55%), Positives = 72/100 (72%)

Query: 11  VRVYTVCDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFR 70
           V+VYTV  ESRYL+V+ VP+LG   +LL+LFA YG IEE + +D   C+ FT+VY IKF 
Sbjct: 1   VKVYTVNSESRYLLVQGVPALGVEKELLELFALYGTIEEYRLLDEYPCEEFTEVYLIKFE 60

Query: 71  LFSNARFAKRKLDEFVFLGNRLKVSYASQFESLADTKDKL 110
              +ARFAKRKLDE  F G  L V YA ++E++ DT++KL
Sbjct: 61  TIQSARFAKRKLDERSFFGGLLHVCYAPEYETVQDTREKL 100

This subfamily corresponds to the RRM of RBM48, a putative RNA-binding protein of unknown function. It contains one RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain). . Length = 100

>gnl|CDD|206064 pfam13893, RRM_5, RNA recognition motif

 Score = 47.5 bits (114), Expect = 6e-08
 Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 5/61 (8%)

Query: 37 LLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSY 96
          L KLF+ +G++E+ K +  +         F++F     A  A + L+  +F G  L+V Y
Sbjct: 1  LYKLFSPFGNVEKIKLLKKKP-----GFAFVEFSTEEAAEKAVQYLNGVLFGGRPLRVDY 55

Query: 97 A 97
          +
Sbjct: 56 S 56

(a.k.a. RRM, RBD, or RNP domain). The RRM motif is probably diagnostic of an RNA binding protein. RRMs are found in a variety of RNA binding proteins, including various hnRNP proteins, proteins implicated in regulation of alternative splicing, and protein components of snRNPs. The motif also appears in a few single stranded DNA binding proteins. Length = 56

>gnl|CDD|240668 cd00590, RRM_SF, RNA recognition motif (RRM) superfamily

 Score = 44.6 bits (106), Expect = 1e-06
 Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 1/73 (1%)

Query: 23 LIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKL 82
          L V N+P     +DL +LF+ +G+IE  + +  +D        F++F    +A  A   L
Sbjct: 1  LFVGNLPPDTTEEDLRELFSKFGEIESVRIVRDKDGKS-KGFAFVEFESPEDAEKALEAL 59

Query: 83 DEFVFLGNRLKVS 95
          +     G +LKVS
Sbjct: 60 NGKELDGRKLKVS 72

RRM, also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs). Length = 72

>gnl|CDD|222631 pfam14259, RRM_6, RNA recognition motif (a

 Score = 42.5 bits (101), Expect = 5e-06
 Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 2/71 (2%)

Query: 23 LIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKL 82
          L VRN+P     +DL + F+ YG +E  + +   + D      F++F    +A  A +KL
Sbjct: 1  LYVRNLPPSVTEEDLREFFSPYGKVEGVRLVR--NKDRPRGFAFVEFASPEDAEAALKKL 58

Query: 83 DEFVFLGNRLK 93
          +  V  G  L+
Sbjct: 59 NGLVLDGRTLR 69

k.a. RRM, RBD, or RNP domain). Length = 69

>gnl|CDD|240821 cd12375, RRM1_Hu_like, RNA recognition motif 1 in the Hu proteins family, Drosophila sex-lethal (SXL), and similar proteins

 Score = 41.9 bits (99), Expect = 1e-05
 Identities = 26/79 (32%), Positives = 36/79 (45%), Gaps = 8/79 (10%)

Query: 23 LIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVY----FIKFRLFSNARFA 78
          LIV  +P     ++L  LF   G IE CK +     D  T       F+ +   ++A+ A
Sbjct: 3  LIVNYLPQDMTQEELRSLFEAIGPIESCKIV----RDRITGQSLGYGFVDYVDENDAQKA 58

Query: 79 KRKLDEFVFLGNRLKVSYA 97
             L+ F     RLKVSYA
Sbjct: 59 INTLNGFEIRNKRLKVSYA 77

This subfamily corresponds to the RRM1 of Hu proteins and SXL. The Hu proteins family represents a group of RNA-binding proteins involved in diverse biological processes. Since the Hu proteins share high homology with the Drosophila embryonic lethal abnormal vision (ELAV) protein, the Hu family is sometimes referred to as the ELAV family. Drosophila ELAV is exclusively expressed in neurons and is required for the correct differentiation and survival of neurons in flies. The neuronal members of the Hu family include Hu-antigen B (HuB or ELAV-2 or Hel-N1), Hu-antigen C (HuC or ELAV-3 or PLE21), and Hu-antigen D (HuD or ELAV-4), which play important roles in neuronal differentiation, plasticity and memory. HuB is also expressed in gonads. Hu-antigen R (HuR or ELAV-1 or HuA) is ubiquitously expressed Hu family member. It has a variety of biological functions mostly related to the regulation of cellular response to DNA damage and other types of stress. Hu proteins perform their cytoplasmic and nuclear molecular functions by coordinately regulating functionally related mRNAs. In the cytoplasm, Hu proteins recognize and bind to AU-rich RNA elements (AREs) in the 3' untranslated regions (UTRs) of certain target mRNAs, such as GAP-43, vascular epithelial growth factor (VEGF), the glucose transporter GLUT1, eotaxin and c-fos, and stabilize those ARE-containing mRNAs. They also bind and regulate the translation of some target mRNAs, such as neurofilament M, GLUT1, and p27. In the nucleus, Hu proteins function as regulators of polyadenylation and alternative splicing. Each Hu protein contains three RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). RRM1 and RRM2 may cooperate in binding to an ARE. RRM3 may help to maintain the stability of the RNA-protein complex, and might also bind to poly(A) tails or be involved in protein-protein interactions. This family also includes the sex-lethal protein (SXL) from Drosophila melanogaster. SXL governs sexual differentiation and X chromosome dosage compensation in flies. It induces female-specific alternative splicing of the transformer (tra) pre-mRNA by binding to the tra uridine-rich polypyrimidine tract at the non-sex-specific 3' splice site during the sex-determination process. SXL binds to its own pre-mRNA and promotes female-specific alternative splicing. It contains an N-terminal Gly/Asn-rich domain that may be responsible for the protein-protein interaction, and tandem RRMs that show high preference to bind single-stranded, uridine-rich target RNA transcripts. . Length = 77

>gnl|CDD|240805 cd12359, RRM2_VICKZ, RNA recognition motif 2 in the VICKZ family proteins

 Score = 41.9 bits (99), Expect = 1e-05
 Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 3/76 (3%)

Query: 21 RYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKR 80
          R + + N+P     +DL  L +TYG ++ C   +       T    + +     A+ A  
Sbjct: 1  RKIQISNIPPHVRWEDLDSLLSTYGTVKNC---EQVPTKSETATVNVTYESPEQAQQAVN 57

Query: 81 KLDEFVFLGNRLKVSY 96
          KL+   + G++LKVSY
Sbjct: 58 KLNGHEYEGSKLKVSY 73

This subfamily corresponds to the RRM2 of IGF-II mRNA-binding proteins (IGF2BPs or IMPs) in the VICKZ family that have been implicated in the post-transcriptional regulation of several different RNAs and in subcytoplasmic localization of mRNAs during embryogenesis. IGF2BPs are composed of two RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), and four hnRNP K homology (KH) domains. . Length = 76

>gnl|CDD|214636 smart00360, RRM, RNA recognition motif

 Score = 40.3 bits (95), Expect = 4e-05
 Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 8/76 (10%)

Query: 23 LIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVY----FIKFRLFSNARFA 78
          L V N+P     ++L +LF+ +G +E  + +     D  T       F++F    +A  A
Sbjct: 2  LFVGNLPPDTTEEELRELFSKFGKVESVRLV----RDKETGKSKGFAFVEFESEEDAEKA 57

Query: 79 KRKLDEFVFLGNRLKV 94
             L+     G  LKV
Sbjct: 58 LEALNGKELDGRPLKV 73

Length = 73

>gnl|CDD|215696 pfam00076, RRM_1, RNA recognition motif

 Score = 39.5 bits (93), Expect = 7e-05
 Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 1/71 (1%)

Query: 23 LIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKL 82
          L V N+P     +DL  LF+ +G IE  + +  E         F++F    +A  A   L
Sbjct: 1  LFVGNLPPDTTEEDLKDLFSKFGPIESIRIVRDET-GRSKGFAFVEFEDEEDAEKALEAL 59

Query: 83 DEFVFLGNRLK 93
          +     G  L+
Sbjct: 60 NGKELGGRELR 70

(a.k.a. RRM, RBD, or RNP domain). The RRM motif is probably diagnostic of an RNA binding protein. RRMs are found in a variety of RNA binding proteins, including various hnRNP proteins, proteins implicated in regulation of alternative splicing, and protein components of snRNPs. The motif also appears in a few single stranded DNA binding proteins. The RRM structure consists of four strands and two helices arranged in an alpha/beta sandwich, with a third helix present during RNA binding in some cases The C-terminal beta strand (4th strand) and final helix are hard to align and have been omitted in the SEED alignment The LA proteins have an N terminal rrm which is included in the seed. There is a second region towards the C terminus that has some features characteristic of a rrm but does not appear to have the important structural core of a rrm. The LA proteins are one of the main autoantigens in Systemic lupus erythematosus (SLE), an autoimmune disease. Length = 70

>gnl|CDD|241011 cd12567, RRM3_RBM19, RNA recognition motif 3 in RNA-binding protein 19 (RBM19) and similar proteins

 Score = 36.6 bits (85), Expect = 9e-04
 Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 2/77 (2%)

Query: 19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECK-PMDAEDCDPFTDVYFIKFRLFSNARF 77
          ES  L +RN+      +DL KLF+ YG + E   P+D     P     F+ + +  +A  
Sbjct: 1  ESGRLFIRNLAYTCTEEDLEKLFSKYGPLSEVHLPIDKLTKKP-KGFAFVTYMIPEHAVK 59

Query: 78 AKRKLDEFVFLGNRLKV 94
          A  +LD  VF G  L +
Sbjct: 60 AFAELDGTVFQGRLLHL 76

This subgroup corresponds to the RRM3 of RBM19, also termed RNA-binding domain-1 (RBD-1), which is a nucleolar protein conserved in eukaryotes. It is involved in ribosome biogenesis by processing rRNA. In addition, it is essential for preimplantation development. RBM19 has a unique domain organization containing 6 conserved RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). . Length = 79

>gnl|CDD|240762 cd12316, RRM3_RBM19_RRM2_MRD1, RNA recognition motif 3 in RNA-binding protein 19 (RBM19) and RNA recognition motif 2 found in multiple RNA-binding domain-containing protein 1 (MRD1)

 Score = 35.7 bits (83), Expect = 0.002
 Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 2/73 (2%)

Query: 23 LIVRNVPSLGCGDDLLKLFATYGDIEECK-PMDAEDCDPFTDVYFIKFRLFSNARFAKRK 81
          L VRN+P     ++L +LF  +G+I E   P+D E         F+ F    +A  A  +
Sbjct: 2  LFVRNLPFTTTEEELRELFEAFGEISEVHLPLDKETKRS-KGFAFVSFMFPEHAVKAYSE 60

Query: 82 LDEFVFLGNRLKV 94
          LD  +F G  L V
Sbjct: 61 LDGSIFQGRLLHV 73

This subfamily corresponds to the RRM3 of RBM19 and RRM2 of MRD1. RBM19, also termed RNA-binding domain-1 (RBD-1), is a nucleolar protein conserved in eukaryotes involved in ribosome biogenesis by processing rRNA and is essential for preimplantation development. It has a unique domain organization containing 6 conserved RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). MRD1 is encoded by a novel yeast gene MRD1 (multiple RNA-binding domain). It is well conserved in yeast and its homologs exist in all eukaryotes. MRD1 is present in the nucleolus and the nucleoplasm. It interacts with the 35 S precursor rRNA (pre-rRNA) and U3 small nucleolar RNAs (snoRNAs). It is essential for the initial processing at the A0-A2 cleavage sites in the 35 S pre-rRNA. MRD1 contains 5 conserved RRMs, which may play an important structural role in organizing specific rRNA processing events. . Length = 74

>gnl|CDD|240836 cd12390, RRM3_RAVER, RNA recognition motif 3 in ribonucleoprotein PTB-binding raver-1, raver-2 and similar proteins

 Score = 36.1 bits (84), Expect = 0.002
 Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 2/80 (2%)

Query: 20 SRYLIVRNVPSLGCGDDLL-KLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFA 78
          SR L V  +P       +L KLF+  G    C+   A +  P     F+++    +A  A
Sbjct: 2  SRCLFVDRLPKTFRDVSILRKLFSQVGKPTFCQLAIAPNGQP-RGFAFVEYATAEDAEEA 60

Query: 79 KRKLDEFVFLGNRLKVSYAS 98
          ++ L+     G+ ++VS+ +
Sbjct: 61 QQALNGHSLQGSPIRVSFGN 80

This subfamily corresponds to the RRM3 of raver-1 and raver-2. Raver-1 is a ubiquitously expressed heterogeneous nuclear ribonucleoprotein (hnRNP) that serves as a co-repressor of the nucleoplasmic splicing repressor polypyrimidine tract-binding protein (PTB)-directed splicing of select mRNAs. It shuttles between the cytoplasm and the nucleus and can accumulate in the perinucleolar compartment, a dynamic nuclear substructure that harbors PTB. Raver-1 also modulates focal adhesion assembly by binding to the cytoskeletal proteins, including alpha-actinin, vinculin, and metavinculin (an alternatively spliced isoform of vinculin) at adhesion complexes, particularly in differentiated muscle tissue. Raver-2 is a novel member of the heterogeneous nuclear ribonucleoprotein (hnRNP) family. It shows high sequence homology to raver-1. Raver-2 exerts a spatio-temporal expression pattern during embryogenesis and is mainly limited to differentiated neurons and glia cells. Although it displays nucleo-cytoplasmic shuttling in heterokaryons, raver2 localizes to the nucleus in glia cells and neurons. Raver-2 can interact with PTB and may participate in PTB-mediated RNA-processing. However, there is no evidence indicating that raver-2 can bind to cytoplasmic proteins. Both, raver-1 and raver-2, contain three N-terminal RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), two putative nuclear localization signals (NLS) at the N- and C-termini, a central leucine-rich region, and a C-terminal region harboring two [SG][IL]LGxxP motifs. They binds to RNA through the RRMs. In addition, the two [SG][IL]LGxxP motifs serve as the PTB-binding motifs in raver1. However, raver-2 interacts with PTB through the SLLGEPP motif only. . Length = 92

>gnl|CDD|241010 cd12566, RRM2_MRD1, RNA recognition motif 2 in yeast multiple RNA-binding domain-containing protein 1 (MRD1) and similar proteins

 Score = 35.4 bits (82), Expect = 0.003
 Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 6/79 (7%)

Query: 19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECK-PMD--AEDCDPFTDVYFIKFRLFSNA 75
          E+  L VRN+P     DDL KLF+ +G++ E    +D  +     F    ++ F    +A
Sbjct: 1  ETGRLFVRNLPYSCKEDDLEKLFSKFGELSEVHVAIDKKSGKSKGFA---YVLFLDPEDA 57

Query: 76 RFAKRKLDEFVFLGNRLKV 94
            A ++LD  VF G  + +
Sbjct: 58 VKAYKELDGKVFQGRLIHI 76

This subgroup corresponds to the RRM2 of MRD1 which is encoded by a novel yeast gene MRD1 (multiple RNA-binding domain). It is well-conserved in yeast and its homologs exist in all eukaryotes. MRD1 is present in the nucleolus and the nucleoplasm. It interacts with the 35 S precursor rRNA (pre-rRNA) and U3 small nucleolar RNAs (snoRNAs). It is essential for the initial processing at the A0-A2 cleavage sites in the 35 S pre-rRNA. MRD1 contains 5 conserved RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), which may play an important structural role in organizing specific rRNA processing events. . Length = 79

>gnl|CDD|240684 cd12238, RRM1_RBM40_like, RNA recognition motif 1 in RNA-binding protein 40 (RBM40) and similar proteins

 Score = 34.5 bits (80), Expect = 0.004
 Identities = 21/75 (28%), Positives = 29/75 (38%), Gaps = 3/75 (4%)

Query: 23 LIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKL 82
          L+VR++P     DD   L   +G     + M         +  F  F     A  A  +L
Sbjct: 2  LLVRHLPPELSEDDKEDLLKHFG-ASSVRVM--SRRGKLKNTAFATFDNEQAASQALSRL 58

Query: 83 DEFVFLGNRLKVSYA 97
           +   LG RL V YA
Sbjct: 59 HQLKILGKRLVVEYA 73

This subfamily corresponds to the RRM1 of RBM40, also known as RNA-binding region-containing protein 3 (RNPC3) or U11/U12 small nuclear ribonucleoprotein 65 kDa protein (U11/U12-65K protein), It serves as a bridging factor between the U11 and U12 snRNPs. It contains two repeats of RNA recognition motif (RRM), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), connected by a linker that includes a proline-rich region. It binds to the U11-associated 59K protein via its RRM1 and employs the RRM2 to bind hairpin III of the U12 small nuclear RNA (snRNA). The proline-rich region might be involved in protein-protein interactions. . Length = 73

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	230
TIGR01661	352	ELAV_HUD_SF ELAV/HuD family splicing factor. These	99.83
TIGR01659	346	sex-lethal sex-lethal family splicing factor. This	99.83
PLN03134	144	glycine-rich RNA-binding protein 4; Provisional	99.8
TIGR01661	352	ELAV_HUD_SF ELAV/HuD family splicing factor. These	99.79
PF00076	70	RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or	99.74
KOG0145	360	consensus RNA-binding protein ELAV/HU (RRM superfa	99.71
TIGR01645	612	half-pint poly-U binding splicing factor, half-pin	99.69
TIGR01622	457	SF-CC1 splicing factor, CC1-like family. A homolog	99.67
TIGR01628	562	PABP-1234 polyadenylate binding protein, human typ	99.66
TIGR01628	562	PABP-1234 polyadenylate binding protein, human typ	99.65
KOG0114	124	consensus Predicted RNA-binding protein (RRM super	99.65
PF14259	70	RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or	99.65
KOG0122	270	consensus Translation initiation factor 3, subunit	99.65
TIGR01642	509	U2AF_lg U2 snRNP auxilliary factor, large subunit,	99.64
COG0724	306	RNA-binding proteins (RRM domain) [General functio	99.63
KOG4206	221	consensus Spliceosomal protein snRNP-U1A/U2B [RNA	99.62
TIGR01622	457	SF-CC1 splicing factor, CC1-like family. A homolog	99.62
TIGR01659	346	sex-lethal sex-lethal family splicing factor. This	99.62
smart00362	72	RRM_2 RNA recognition motif.	99.61
KOG0126	219	consensus Predicted RNA-binding protein (RRM super	99.61
smart00360	71	RRM RNA recognition motif.	99.61
PLN03120	260	nucleic acid binding protein; Provisional	99.59
TIGR01645	612	half-pint poly-U binding splicing factor, half-pin	99.59
KOG0107	195	consensus Alternative splicing factor SRp20/9G8 (R	99.58
KOG0121	153	consensus Nuclear cap-binding protein complex, sub	99.56
cd00590	74	RRM RRM (RNA recognition motif), also known as RBD	99.56
TIGR01649	481	hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor	99.53
PF13893	56	RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or	99.53
KOG4207	256	consensus Predicted splicing factor, SR protein su	99.52
KOG0108	435	consensus mRNA cleavage and polyadenylation factor	99.52
KOG0111	298	consensus Cyclophilin-type peptidyl-prolyl cis-tra	99.52
TIGR01648	578	hnRNP-R-Q heterogeneous nuclear ribonucleoprotein	99.51
TIGR01649	481	hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor	99.51
PLN03121	243	nucleic acid binding protein; Provisional	99.49
PLN03213	759	repressor of silencing 3; Provisional	99.49
KOG0127	678	consensus Nucleolar protein fibrillarin NOP77 (RRM	99.46
KOG0109	346	consensus RNA-binding protein LARK, contains RRM a	99.46
KOG0149	247	consensus Predicted RNA-binding protein SEB4 (RRM	99.45
smart00361	70	RRM_1 RNA recognition motif.	99.43
KOG0125	376	consensus Ataxin 2-binding protein (RRM superfamil	99.43
TIGR01648	578	hnRNP-R-Q heterogeneous nuclear ribonucleoprotein	99.41
KOG0145	360	consensus RNA-binding protein ELAV/HU (RRM superfa	99.4
KOG0113	335	consensus U1 small nuclear ribonucleoprotein (RRM	99.4
KOG0148	321	consensus Apoptosis-promoting RNA-binding protein	99.4
KOG0148	321	consensus Apoptosis-promoting RNA-binding protein	99.39
KOG0131	203	consensus Splicing factor 3b, subunit 4 [RNA proce	99.39
KOG0130	170	consensus RNA-binding protein RBM8/Tsunagi (RRM su	99.37
KOG0127	678	consensus Nucleolar protein fibrillarin NOP77 (RRM	99.37
KOG0117	506	consensus Heterogeneous nuclear ribonucleoprotein	99.35
KOG0117	506	consensus Heterogeneous nuclear ribonucleoprotein	99.35
KOG0144	510	consensus RNA-binding protein CUGBP1/BRUNO (RRM su	99.35
KOG0105	241	consensus Alternative splicing factor ASF/SF2 (RRM	99.33
KOG0144	510	consensus RNA-binding protein CUGBP1/BRUNO (RRM su	99.31
TIGR01642	509	U2AF_lg U2 snRNP auxilliary factor, large subunit,	99.27
KOG0147	549	consensus Transcriptional coactivator CAPER (RRM s	99.26
KOG0123	369	consensus Polyadenylate-binding protein (RRM super	99.26
KOG0110	725	consensus RNA-binding protein (RRM superfamily) [G	99.2
KOG0109	346	consensus RNA-binding protein LARK, contains RRM a	99.18
KOG0131	203	consensus Splicing factor 3b, subunit 4 [RNA proce	99.17
KOG0415	479	consensus Predicted peptidyl prolyl cis-trans isom	99.15
KOG0146	371	consensus RNA-binding protein ETR-3 (RRM superfami	99.15
KOG4208	214	consensus Nucleolar RNA-binding protein NIFK [Gene	99.13
KOG0146	371	consensus RNA-binding protein ETR-3 (RRM superfami	99.05
KOG0124	544	consensus Polypyrimidine tract-binding protein PUF	99.01
KOG0110	725	consensus RNA-binding protein (RRM superfamily) [G	98.99
KOG0123	369	consensus Polyadenylate-binding protein (RRM super	98.99
KOG0132	894	consensus RNA polymerase II C-terminal domain-bind	98.95
KOG4661	940	consensus Hsp27-ERE-TATA-binding protein/Scaffold	98.8
KOG4212	608	consensus RNA-binding protein hnRNP-M [RNA process	98.79
KOG0533	243	consensus RRM motif-containing protein [RNA proces	98.78
KOG1548	382	consensus Transcription elongation factor TAT-SF1	98.74
KOG0124	544	consensus Polypyrimidine tract-binding protein PUF	98.72
KOG0153	377	consensus Predicted RNA-binding protein (RRM super	98.7
KOG4212	608	consensus RNA-binding protein hnRNP-M [RNA process	98.7
KOG1457	284	consensus RNA binding protein (contains RRM repeat	98.68
KOG4205	311	consensus RNA-binding protein musashi/mRNA cleavag	98.67
KOG4209	231	consensus Splicing factor RNPS1, SR protein superf	98.65
KOG4660	549	consensus Protein Mei2, essential for commitment t	98.63
KOG0151	877	consensus Predicted splicing regulator, contains R	98.6
KOG0106	216	consensus Alternative splicing factor SRp55/B52/SR	98.57
KOG1190	492	consensus Polypyrimidine tract-binding protein [RN	98.56
KOG4454	267	consensus RNA binding protein (RRM superfamily) [G	98.51
PF04059	97	RRM_2: RNA recognition motif 2; InterPro: IPR00720	98.5
KOG0116	419	consensus RasGAP SH3 binding protein rasputin, con	98.44
KOG4205	311	consensus RNA-binding protein musashi/mRNA cleavag	98.39
KOG0226	290	consensus RNA-binding proteins [General function p	98.26
PF11608	90	Limkain-b1: Limkain b1; InterPro: IPR024582 This e	98.25
KOG0120	500	consensus Splicing factor U2AF, large subunit (RRM	98.21
KOG1995	351	consensus Conserved Zn-finger protein [General fun	98.21
KOG0147	549	consensus Transcriptional coactivator CAPER (RRM s	98.12
KOG4210	285	consensus Nuclear localization sequence binding pr	98.07
KOG4206	221	consensus Spliceosomal protein snRNP-U1A/U2B [RNA	97.93
KOG2314	698	consensus Translation initiation factor 3, subunit	97.85
COG5175	480	MOT2 Transcriptional repressor [Transcription]	97.84
KOG0106	216	consensus Alternative splicing factor SRp55/B52/SR	97.8
KOG1548	382	consensus Transcription elongation factor TAT-SF1	97.7
KOG1457	284	consensus RNA binding protein (contains RRM repeat	97.65
KOG0120	500	consensus Splicing factor U2AF, large subunit (RRM	97.54
PF08777	105	RRM_3: RNA binding motif; InterPro: IPR014886 This	97.51
PF14605	53	Nup35_RRM_2: Nup53/35/40-type RNA recognition moti	97.48
KOG2202	260	consensus U2 snRNP splicing factor, small subunit,	97.47
KOG1855	484	consensus Predicted RNA-binding protein [General f	97.46
KOG1190	492	consensus Polypyrimidine tract-binding protein [RN	97.43
KOG3152	278	consensus TBP-binding protein, activator of basal	97.43
KOG4211	510	consensus Splicing factor hnRNP-F and related RNA-	97.42
KOG4849	498	consensus mRNA cleavage factor I subunit/CPSF subu	97.2
KOG1456	494	consensus Heterogeneous nuclear ribonucleoprotein	97.16
KOG4211	510	consensus Splicing factor hnRNP-F and related RNA-	97.09
KOG1456	494	consensus Heterogeneous nuclear ribonucleoprotein	97.08
PF05172	100	Nup35_RRM: Nup53/35/40-type RNA recognition motif;	97.0
KOG0128	881	consensus RNA-binding protein SART3 (RRM superfami	97.0
PF03467	176	Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120	96.95
KOG4307	944	consensus RNA binding protein RBM12/SWAN [General	96.91
PF15023	166	DUF4523: Protein of unknown function (DUF4523)	96.82
KOG1996	378	consensus mRNA splicing factor [RNA processing and	96.74
KOG0115	275	consensus RNA-binding protein p54nrb (RRM superfam	96.71
KOG2193	584	consensus IGF-II mRNA-binding protein IMP, contain	96.66
KOG0112	975	consensus Large RNA-binding protein (RRM superfami	96.53
KOG0128	881	consensus RNA-binding protein SART3 (RRM superfami	96.42
KOG0129	520	consensus Predicted RNA-binding protein (RRM super	96.34
PF04847	184	Calcipressin: Calcipressin; InterPro: IPR006931 Ca	96.32
KOG0105	241	consensus Alternative splicing factor ASF/SF2 (RRM	96.14
KOG1365	508	consensus RNA-binding protein Fusilli, contains RR	96.11
PF08952	146	DUF1866: Domain of unknown function (DUF1866) ; In	96.07
KOG4676	479	consensus Splicing factor, arginine/serine-rich [R	95.96
PF08675	87	RNA_bind: RNA binding domain; InterPro: IPR014789	95.84
KOG2068	327	consensus MOT2 transcription factor [Transcription	95.67
KOG0129	520	consensus Predicted RNA-binding protein (RRM super	95.58
KOG2193	584	consensus IGF-II mRNA-binding protein IMP, contain	94.8
PF10309	62	DUF2414: Protein of unknown function (DUF2414); In	94.59
KOG1365	508	consensus RNA-binding protein Fusilli, contains RR	94.31
KOG2416	718	consensus Acinus (induces apoptotic chromatin cond	94.26
PF11767	66	SET_assoc: Histone lysine methyltransferase SET as	94.22
KOG4307	944	consensus RNA binding protein RBM12/SWAN [General	93.19
KOG4285	350	consensus Mitotic phosphoprotein [Cell cycle contr	93.0
KOG4574	1007	consensus RNA-binding protein (contains RRM and Pu	92.64
KOG4660	549	consensus Protein Mei2, essential for commitment t	92.55
KOG0112	975	consensus Large RNA-binding protein (RRM superfami	92.33
PF07576	110	BRAP2: BRCA1-associated protein 2; InterPro: IPR01	90.76
KOG2591	684	consensus c-Mpl binding protein, contains La domai	90.06
KOG2135	526	consensus Proteins containing the RNA recognition	88.31
KOG2318	650	consensus Uncharacterized conserved protein [Funct	88.24
KOG4210	285	consensus Nuclear localization sequence binding pr	84.64
COG0724	306	RNA-binding proteins (RRM domain) [General functio	84.52
KOG0804	493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	83.05
KOG2253	668	consensus U1 snRNP complex, subunit SNU71 and rela	82.33

>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor

Probab=99.83  E-value=1.6e-21  Score=175.19  Aligned_cols=163  Identities=20%  Similarity=0.240  Sum_probs=127.4

Q ss_pred             CCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEecC
Q 026963           19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYAS   98 (230)
Q Consensus        19 eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA~   98 (230)
                      +..+|||+|||..++++||+++|++||+|.+|+|+.|+.+++++|||||+|.+.++|..|++.|||..+.|++|+|+|+.
T Consensus         2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~   81 (352)
T TIGR01661         2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR   81 (352)
T ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence            56799999999999999999999999999999999999999999999999999999999999999999999999999995


Q ss_pred             CCCChHHHHHHHHHHHHHHHHHhh-cCCCCCCCcccccc-cCCCCCCCCCCCCcchhhhhhhhcccccccccccccCCCC
Q 026963           99 QFESLADTKDKLETRRKEVLARLN-SGRSKVPNIHSSVD-LGEPSLVTAPLQPNLVSEQITSWQRASSESQRISHVNESP  176 (230)
Q Consensus        99 e~Es~~d~r~Kl~~rr~ev~~Rl~-~n~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (230)
                      +....  .+    .      .++- .|+|..+.|..... +...|   .+..+.+++-+.+...++ .+|..|....|+.
T Consensus        82 ~~~~~--~~----~------~~l~v~~l~~~~~~~~l~~~f~~~G---~i~~~~~~~~~~~~~~~g-~~fv~f~~~~~A~  145 (352)
T TIGR01661        82 PSSDS--IK----G------ANLYVSGLPKTMTQHELESIFSPFG---QIITSRILSDNVTGLSKG-VGFIRFDKRDEAD  145 (352)
T ss_pred             ccccc--cc----c------ceEEECCccccCCHHHHHHHHhccC---CEEEEEEEecCCCCCcCc-EEEEEECCHHHHH
Confidence            32211  00    0      1122 58888888887776 77777   444445444444555677 6788888888887


Q ss_pred             ceeeccCcccccccCchhhHH
Q 026963          177 ITRVSSDKDYFASQSMNQTVR  197 (230)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~v~  197 (230)
                      .+.-.+|...+.+...+..|+
T Consensus       146 ~ai~~l~g~~~~g~~~~i~v~  166 (352)
T TIGR01661       146 RAIKTLNGTTPSGCTEPITVK  166 (352)
T ss_pred             HHHHHhCCCccCCCceeEEEE
Confidence            776666666666655554444

These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).

>TIGR01659 sex-lethal sex-lethal family splicing factor

Probab=99.83  E-value=5.4e-22  Score=183.97  Aligned_cols=169  Identities=22%  Similarity=0.231  Sum_probs=143.2

Q ss_pred             CCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEecC
Q 026963           19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYAS   98 (230)
Q Consensus        19 eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA~   98 (230)
                      ..++|||+|||+++++++|+++|+.||+|++|+|+.|..|++++|||||+|.+.++|..|++.|||..+.|++|+|+||.
T Consensus       106 ~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~a~  185 (346)
T TIGR01659       106 SGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSYAR  185 (346)
T ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeeccc
Confidence            56799999999999999999999999999999999999999999999999999999999999999999999999999994


Q ss_pred             CCCChHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccc-cCCCCCCCCCCCCcchhhhhhhhcccccccccccccCCCCc
Q 026963           99 QFESLADTKDKLETRRKEVLARLNSGRSKVPNIHSSVD-LGEPSLVTAPLQPNLVSEQITSWQRASSESQRISHVNESPI  177 (230)
Q Consensus        99 e~Es~~d~r~Kl~~rr~ev~~Rl~~n~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (230)
                      +...  ...    ..+     -.=.|++..+++.+.++ |..+|   .+.++.+++.+.+...++ .+|+.|....+|..
T Consensus       186 p~~~--~~~----~~~-----lfV~nLp~~vtee~L~~~F~~fG---~V~~v~i~~d~~tg~~kG-~aFV~F~~~e~A~~  250 (346)
T TIGR01659       186 PGGE--SIK----DTN-----LYVTNLPRTITDDQLDTIFGKYG---QIVQKNILRDKLTGTPRG-VAFVRFNKREEAQE  250 (346)
T ss_pred             cccc--ccc----cce-----eEEeCCCCcccHHHHHHHHHhcC---CEEEEEEeecCCCCccce-EEEEEECCHHHHHH
Confidence            3111  000    000     11258999999888887 88888   555566666666666777 79999999999999


Q ss_pred             eeeccCcccccccCchhhHHHHHHH
Q 026963          178 TRVSSDKDYFASQSMNQTVRLVREK  202 (230)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~v~~v~~~  202 (230)
                      +--..|..+|.+.+.+.+|++..++
T Consensus       251 Ai~~lng~~~~g~~~~l~V~~a~~~  275 (346)
T TIGR01659       251 AISALNNVIPEGGSQPLTVRLAEEH  275 (346)
T ss_pred             HHHHhCCCccCCCceeEEEEECCcc
Confidence            9999999999999999999988765

This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).

>PLN03134 glycine-rich RNA-binding protein 4; Provisional

Probab=99.80  E-value=3.8e-19  Score=146.37  Aligned_cols=81  Identities=20%  Similarity=0.200  Sum_probs=78.3

Q ss_pred             CCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963           18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA   97 (230)
Q Consensus        18 ~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA   97 (230)
                      +.+++|||+|||+.+++++|+++|++||+|.+|.++.|..|++++|||||+|.+.++|+.|++.|||..+.|++|+|++|
T Consensus        32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a  111 (144)
T PLN03134         32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA  111 (144)
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeC
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             C
Q 026963           98 S   98 (230)
Q Consensus        98 ~   98 (230)
                      .
T Consensus       112 ~  112 (144)
T PLN03134        112 N  112 (144)
T ss_pred             C
Confidence            4

>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor

Probab=99.79  E-value=3.8e-19  Score=159.88  Aligned_cols=80  Identities=18%  Similarity=0.284  Sum_probs=76.8

Q ss_pred             CCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEecC
Q 026963           19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYAS   98 (230)
Q Consensus        19 eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA~   98 (230)
                      .+.+|||+|||+.+++++|.++|++||.|++|+|+.|+.|+.++|||||+|.+.++|..|+..|||..|.|++|+|+|+.
T Consensus       268 ~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~  347 (352)
T TIGR01661       268 AGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFKT  347 (352)
T ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcc
Confidence            34579999999999999999999999999999999999999999999999999999999999999999999999999994

These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).

>PF00076 RRM_1: RNA recognition motif

Probab=99.74  E-value=9.2e-18  Score=116.76  Aligned_cols=70  Identities=24%  Similarity=0.367  Sum_probs=67.6

Q ss_pred             EEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeE
Q 026963           23 LIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLK   93 (230)
Q Consensus        23 LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~   93 (230)
                      |||+|||..+++++|.++|++||+|..+.+..+ .++.++|+|||+|.+.++|..|++.|||+.+.|++|+
T Consensus         1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir   70 (70)
T PF00076_consen    1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR   70 (70)
T ss_dssp             EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred             cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence            799999999999999999999999999999987 6799999999999999999999999999999999986

(a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....

>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]

Probab=99.71  E-value=2.1e-18  Score=155.93  Aligned_cols=167  Identities=22%  Similarity=0.232  Sum_probs=140.3

Q ss_pred             CC-CeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963           19 ES-RYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA   97 (230)
Q Consensus        19 eS-~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA   97 (230)
                      ++ ++|+|..||..+|+|||+.||+..|+|++|++++|+.||.+-||+||.|.+++||++|+..|||-.++.+.|+|+||
T Consensus        39 ~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyA  118 (360)
T KOG0145|consen   39 ESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYA  118 (360)
T ss_pred             cccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEec
Confidence            44 47999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCChHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccc-cCCCCCCCCCCCCcchhhhhhhhcccccccccccccCCCC
Q 026963           98 SQFESLADTKDKLETRRKEVLARLNSGRSKVPNIHSSVD-LGEPSLVTAPLQPNLVSEQITSWQRASSESQRISHVNESP  176 (230)
Q Consensus        98 ~e~Es~~d~r~Kl~~rr~ev~~Rl~~n~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (230)
                      ++.-  +..+..    .-+|     .++|+.|.++.-.. |..+|   -++-.-.|..+.+--+|+ +.|..|....+++
T Consensus       119 RPSs--~~Ik~a----NLYv-----SGlPktMtqkelE~iFs~fG---rIItSRiL~dqvtg~srG-VgFiRFDKr~EAe  183 (360)
T KOG0145|consen  119 RPSS--DSIKDA----NLYV-----SGLPKTMTQKELEQIFSPFG---RIITSRILVDQVTGLSRG-VGFIRFDKRIEAE  183 (360)
T ss_pred             cCCh--hhhccc----ceEE-----ecCCccchHHHHHHHHHHhh---hhhhhhhhhhcccceecc-eeEEEecchhHHH
Confidence            4321  111111    1222     37899998877544 88888   444445556677777899 9999999999999


Q ss_pred             ceeeccCcccccccCchhhHHHHH
Q 026963          177 ITRVSSDKDYFASQSMNQTVRLVR  200 (230)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~v~~v~  200 (230)
                      .+--+-|-.-=+|.+-+-||||--
T Consensus       184 ~AIk~lNG~~P~g~tepItVKFan  207 (360)
T KOG0145|consen  184 EAIKGLNGQKPSGCTEPITVKFAN  207 (360)
T ss_pred             HHHHhccCCCCCCCCCCeEEEecC
Confidence            999999999889999999999853

>TIGR01645 half-pint poly-U binding splicing factor, half-pint family

Probab=99.69  E-value=7.8e-18  Score=166.30  Aligned_cols=167  Identities=10%  Similarity=0.073  Sum_probs=123.7

Q ss_pred             CCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEecC
Q 026963           19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYAS   98 (230)
Q Consensus        19 eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA~   98 (230)
                      ...+|||+|||+.+++++|+++|++||+|.+|+++.|+.|++++|||||+|.+.++|..|++.|||..|.|+.|+|.++.
T Consensus       106 ~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~  185 (612)
T TIGR01645       106 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS  185 (612)
T ss_pred             CCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecccc
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999999999763


Q ss_pred             CCCChHHHHHHHHHHHHHHHHHhh-cCCCCCCCcccccc-cCCCCCCCCCCCCcchhhhhhhhcccccccccccccCCCC
Q 026963           99 QFESLADTKDKLETRRKEVLARLN-SGRSKVPNIHSSVD-LGEPSLVTAPLQPNLVSEQITSWQRASSESQRISHVNESP  176 (230)
Q Consensus        99 e~Es~~d~r~Kl~~rr~ev~~Rl~-~n~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (230)
                      ...........+... .....++- .|++..+++...++ |..+|   .+.++.+.++.-....|| ..|..|+...++.
T Consensus       186 ~~p~a~~~~~~~~~~-~~~~~rLfVgnLp~~vteedLk~lFs~FG---~I~svrl~~D~~tgksKG-fGFVeFe~~e~A~  260 (612)
T TIGR01645       186 NMPQAQPIIDMVQEE-AKKFNRIYVASVHPDLSETDIKSVFEAFG---EIVKCQLARAPTGRGHKG-YGFIEYNNLQSQS  260 (612)
T ss_pred             ccccccccccccccc-ccccceEEeecCCCCCCHHHHHHHHhhcC---CeeEEEEEecCCCCCcCC-eEEEEECCHHHHH
Confidence            221111100000000 00011222 57888887777766 78888   455555555555556777 6788888877777


Q ss_pred             ceeeccCccccccc
Q 026963          177 ITRVSSDKDYFASQ  190 (230)
Q Consensus       177 ~~~~~~~~~~~~~~  190 (230)
                      .+--.+|.--+.+.
T Consensus       261 kAI~amNg~elgGr  274 (612)
T TIGR01645       261 EAIASMNLFDLGGQ  274 (612)
T ss_pred             HHHHHhCCCeeCCe
Confidence            77777775544433

In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.

>TIGR01622 SF-CC1 splicing factor, CC1-like family

Probab=99.67  E-value=1.6e-17  Score=155.08  Aligned_cols=166  Identities=11%  Similarity=0.071  Sum_probs=115.5

Q ss_pred             CCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEecC
Q 026963           19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYAS   98 (230)
Q Consensus        19 eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA~   98 (230)
                      ++++|||+|||..+++++|+++|++||+|.+|.++.|+.+++++|||||+|.+.++|..|+. |+|..|.|++|.|.+++
T Consensus        88 ~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~~~  166 (457)
T TIGR01622        88 DDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQSSQ  166 (457)
T ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEeecc
Confidence            57799999999999999999999999999999999999999999999999999999999995 99999999999999874


Q ss_pred             CCCChHHHHHHHHHHHHHHHHHhh-cCCCCCCCcccccc-cCCCCCCCCCCCCcchhhhhhhhcccccccccccccCCCC
Q 026963           99 QFESLADTKDKLETRRKEVLARLN-SGRSKVPNIHSSVD-LGEPSLVTAPLQPNLVSEQITSWQRASSESQRISHVNESP  176 (230)
Q Consensus        99 e~Es~~d~r~Kl~~rr~ev~~Rl~-~n~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (230)
                      ...............-......|- .|++..+.+...++ |..+|   .+..+.++...-+...++ .+|..|....++.
T Consensus       167 ~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G---~i~~v~~~~d~~~g~~~g-~afV~f~~~e~A~  242 (457)
T TIGR01622       167 AEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFG---DIEDVQLHRDPETGRSKG-FGFIQFHDAEEAK  242 (457)
T ss_pred             hhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcC---CeEEEEEEEcCCCCccce-EEEEEECCHHHHH
Confidence            211110000000000000000111 46777777777666 77777   333344333333334555 5777777777777


Q ss_pred             ceeeccCcccccc
Q 026963          177 ITRVSSDKDYFAS  189 (230)
Q Consensus       177 ~~~~~~~~~~~~~  189 (230)
                      .+.-.+|...|.+
T Consensus       243 ~A~~~l~g~~i~g  255 (457)
T TIGR01622       243 EALEVMNGFELAG  255 (457)
T ss_pred             HHHHhcCCcEECC
Confidence            7666666655544

A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.

>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family

Probab=99.66  E-value=5.9e-16  Score=149.07  Aligned_cols=94  Identities=20%  Similarity=0.227  Sum_probs=85.1

Q ss_pred             CCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEecC
Q 026963           19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYAS   98 (230)
Q Consensus        19 eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA~   98 (230)
                      .+.+|||+|||+.+++++|+++|++||+|++|+++.| .++.++|||||+|.+.++|..|+..|||..|.|++|.|.|| 
T Consensus       284 ~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d-~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a-  361 (562)
T TIGR01628       284 QGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLD-EKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALA-  361 (562)
T ss_pred             CCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEEC-CCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEec-
Confidence            4578999999999999999999999999999999998 67999999999999999999999999999999999999999 


Q ss_pred             CCCChHHHHHHHHHHHHH
Q 026963           99 QFESLADTKDKLETRRKE  116 (230)
Q Consensus        99 e~Es~~d~r~Kl~~rr~e  116 (230)
                        .++++.+..+..+...
T Consensus       362 --~~k~~~~~~~~~~~~q  377 (562)
T TIGR01628       362 --QRKEQRRAHLQDQFMQ  377 (562)
T ss_pred             --cCcHHHHHHHHHHHHH
Confidence              6666666666655443

There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.

>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family

Probab=99.65  E-value=4.7e-17  Score=156.67  Aligned_cols=110  Identities=15%  Similarity=0.172  Sum_probs=90.7

Q ss_pred             eEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEecCCCC
Q 026963           22 YLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYASQFE  101 (230)
Q Consensus        22 ~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA~e~E  101 (230)
                      +|||+|||..+++++|+++|++||+|.+|+++.|..|++++|||||.|.+.++|..|+..||+..+.|++|+|.|+....
T Consensus         2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~   81 (562)
T TIGR01628         2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRDP   81 (562)
T ss_pred             eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccccc
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999984211


Q ss_pred             ChHHHHHHHHHHHHHHHHHh-hcCCCCCCCcccccc-cCCCC
Q 026963          102 SLADTKDKLETRRKEVLARL-NSGRSKVPNIHSSVD-LGEPS  141 (230)
Q Consensus       102 s~~d~r~Kl~~rr~ev~~Rl-~~n~~~~~~~~~~~~-~~~~g  141 (230)
                      +.   +      +... ..+ =.|++..+++.+..+ |...|
T Consensus        82 ~~---~------~~~~-~~vfV~nLp~~~~~~~L~~~F~~~G  113 (562)
T TIGR01628        82 SL---R------RSGV-GNIFVKNLDKSVDNKALFDTFSKFG  113 (562)
T ss_pred             cc---c------ccCC-CceEEcCCCccCCHHHHHHHHHhcC
Confidence            11   0      0000 011 147788777777666 77777

There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.

>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]

Probab=99.65  E-value=9.6e-16  Score=122.59  Aligned_cols=76  Identities=22%  Similarity=0.356  Sum_probs=72.0

Q ss_pred             CCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963           19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA   97 (230)
Q Consensus        19 eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA   97 (230)
                      .++-|||+|||..++.+|.++||++||+|..++|..++.|   +|.|||.|+++.+|.+|++.|+|+.+.++.|.|-|-
T Consensus        17 vnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~T---rGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyy   92 (124)
T KOG0114|consen   17 VNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKET---RGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYY   92 (124)
T ss_pred             hheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCc---CceEEEEehHhhhHHHHHHHhcccccCCceEEEEec
Confidence            3788999999999999999999999999999999887654   799999999999999999999999999999999987

>PF14259 RRM_6: RNA recognition motif (a

Probab=99.65  E-value=8.9e-16  Score=108.64  Aligned_cols=70  Identities=21%  Similarity=0.403  Sum_probs=65.5

Q ss_pred             EEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeE
Q 026963           23 LIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLK   93 (230)
Q Consensus        23 LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~   93 (230)
                      |||+|||+.+++++|.++|+.||.|..+.+..++. +.++|+|||+|.+.++|..|++.++|..|.|+.|+
T Consensus         1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~   70 (70)
T PF14259_consen    1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR   70 (70)
T ss_dssp             EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred             CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence            79999999999999999999999999999999977 89999999999999999999999999999999874

k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....

>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]

Probab=99.65  E-value=4.3e-16  Score=139.19  Aligned_cols=83  Identities=20%  Similarity=0.251  Sum_probs=79.4

Q ss_pred             cCCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEe
Q 026963           17 CDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSY   96 (230)
Q Consensus        17 ~~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~Vsy   96 (230)
                      .+.+.+|-|.|||.+++++||.+||-+||.|..|.+..|+.||.++|||||.|.+.++|.+||+.|||+-++.-.|+|+|
T Consensus       186 R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEw  265 (270)
T KOG0122|consen  186 RDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEW  265 (270)
T ss_pred             CCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEe
Confidence            35677899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCC
Q 026963           97 ASQ   99 (230)
Q Consensus        97 A~e   99 (230)
                      +.+
T Consensus       266 skP  268 (270)
T KOG0122|consen  266 SKP  268 (270)
T ss_pred             cCC
Confidence            943

>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor

Probab=99.64  E-value=9.1e-16  Score=144.82  Aligned_cols=83  Identities=19%  Similarity=0.211  Sum_probs=78.9

Q ss_pred             ccCCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEE
Q 026963           16 VCDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVS   95 (230)
Q Consensus        16 v~~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~Vs   95 (230)
                      +.++.++|||+|||..+++++|.++|+.||+|..+.++.+..+|.++|||||+|.+.++|..|+..|||..|+|+.|.|.
T Consensus       291 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~  370 (509)
T TIGR01642       291 VLDSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQ  370 (509)
T ss_pred             CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence            34566899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecC
Q 026963           96 YAS   98 (230)
Q Consensus        96 yA~   98 (230)
                      +|.
T Consensus       371 ~a~  373 (509)
T TIGR01642       371 RAC  373 (509)
T ss_pred             ECc
Confidence            983

Members of this subfamily are found in plants, metazoa and fungi.

>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]

Probab=99.63  E-value=1.4e-15  Score=124.26  Aligned_cols=79  Identities=23%  Similarity=0.323  Sum_probs=76.8

Q ss_pred             CCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEecC
Q 026963           20 SRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYAS   98 (230)
Q Consensus        20 S~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA~   98 (230)
                      ..+|||+|||..+++++|.++|.+||+|..+.+..++.++.++|||||.|.+.++|..|+..|+|..|.|++|+|.++.
T Consensus       115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~  193 (306)
T COG0724         115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQ  193 (306)
T ss_pred             CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccc
Confidence            5899999999999999999999999999999999999999999999999999999999999999999999999999974

>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]

Probab=99.62  E-value=5.5e-16  Score=136.49  Aligned_cols=87  Identities=24%  Similarity=0.389  Sum_probs=77.4

Q ss_pred             CCCCeEEEcCCCCCCCHHHHHH----hhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeE
Q 026963           18 DESRYLIVRNVPSLGCGDDLLK----LFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLK   93 (230)
Q Consensus        18 ~eS~~LyV~NLP~~~teedL~~----LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~   93 (230)
                      +++.+|||+||++....+||+.    |||+||+|.+|.+.+.   .+.+|.|||.|.+.+.|..|+++|+|+.|+|++|+
T Consensus         7 ~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt---~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mr   83 (221)
T KOG4206|consen    7 NPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKT---PKMRGQAFVVFKETEAASAALRALQGFPFYGKPMR   83 (221)
T ss_pred             CCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCC---CCccCceEEEecChhHHHHHHHHhcCCcccCchhh
Confidence            4566999999999887777665    9999999999999865   78999999999999999999999999999999999


Q ss_pred             EEecCCCCChHHHHHHH
Q 026963           94 VSYASQFESLADTKDKL  110 (230)
Q Consensus        94 VsyA~e~Es~~d~r~Kl  110 (230)
                      |+||   .+.++...+.
T Consensus        84 iqyA---~s~sdii~~~   97 (221)
T KOG4206|consen   84 IQYA---KSDSDIIAQA   97 (221)
T ss_pred             eecc---cCccchhhcc
Confidence            9999   6777666653

>TIGR01622 SF-CC1 splicing factor, CC1-like family

Probab=99.62  E-value=1.6e-15  Score=141.65  Aligned_cols=80  Identities=25%  Similarity=0.331  Sum_probs=77.2

Q ss_pred             CCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEecCC
Q 026963           20 SRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYASQ   99 (230)
Q Consensus        20 S~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA~e   99 (230)
                      +.+|||+|||..+++++|.++|++||+|..|.++.+..+++++|||||+|.+.++|..|+..|||..+.|++|+|+||.+
T Consensus       186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~  265 (457)
T TIGR01622       186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQD  265 (457)
T ss_pred             CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccC
Confidence            57999999999999999999999999999999999999999999999999999999999999999999999999999853

A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.

>TIGR01659 sex-lethal sex-lethal family splicing factor

Probab=99.62  E-value=1.9e-15  Score=140.40  Aligned_cols=80  Identities=25%  Similarity=0.318  Sum_probs=76.0

Q ss_pred             CCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCC--ceeEEEe
Q 026963           19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLG--NRLKVSY   96 (230)
Q Consensus        19 eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~G--r~L~Vsy   96 (230)
                      .+++|||.|||+.+++++|+++|++||+|+.|+|+.|+.|++++|||||+|.+.++|..|++.|||..|.|  ++|+|.+
T Consensus       192 ~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~  271 (346)
T TIGR01659       192 KDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRL  271 (346)
T ss_pred             ccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEE
Confidence            35689999999999999999999999999999999999999999999999999999999999999999987  6899999


Q ss_pred             cC
Q 026963           97 AS   98 (230)
Q Consensus        97 A~   98 (230)
                      |.
T Consensus       272 a~  273 (346)
T TIGR01659       272 AE  273 (346)
T ss_pred             CC
Confidence            94

This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).

>smart00362 RRM_2 RNA recognition motif

Probab=99.61  E-value=3.9e-15  Score=101.01  Aligned_cols=72  Identities=28%  Similarity=0.350  Sum_probs=67.9

Q ss_pred             eEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEE
Q 026963           22 YLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVS   95 (230)
Q Consensus        22 ~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~Vs   95 (230)
                      +|||+|||...++++|.++|.+||+|..+.+..++  +.++|+|||.|.+.++|..|+..++|..|.|++|+|+
T Consensus         1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~   72 (72)
T smart00362        1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE   72 (72)
T ss_pred             CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence            58999999999999999999999999999998876  7789999999999999999999999999999999874

>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]

Probab=99.61  E-value=1.7e-16  Score=137.29  Aligned_cols=85  Identities=19%  Similarity=0.355  Sum_probs=80.1

Q ss_pred             CCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEecC
Q 026963           19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYAS   98 (230)
Q Consensus        19 eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA~   98 (230)
                      .|.+|||+|||...|+.||..+||+||+|.+|.+++|+.||+++||||.+|+|..+-..|+..|||..+.|+.|+|+.--
T Consensus        34 dsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv~  113 (219)
T KOG0126|consen   34 DSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHVS  113 (219)
T ss_pred             cceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeecc
Confidence            68899999999999999999999999999999999999999999999999999999999999999999999999998765


Q ss_pred             CCCCh
Q 026963           99 QFESL  103 (230)
Q Consensus        99 e~Es~  103 (230)
                      .+..+
T Consensus       114 ~Yk~p  118 (219)
T KOG0126|consen  114 NYKKP  118 (219)
T ss_pred             cccCC
Confidence            55444

>smart00360 RRM RNA recognition motif

Probab=99.61  E-value=3.5e-15  Score=100.67  Aligned_cols=71  Identities=27%  Similarity=0.374  Sum_probs=67.8

Q ss_pred             EcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEE
Q 026963           25 VRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVS   95 (230)
Q Consensus        25 V~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~Vs   95 (230)
                      |+|||..+++++|..+|++||+|..+.+..++.++.++|+|||+|.+.++|..|++.|+|..|.|+.|+|+
T Consensus         1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~   71 (71)
T smart00360        1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK   71 (71)
T ss_pred             CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence            68999999999999999999999999999988889999999999999999999999999999999999874

>PLN03120 nucleic acid binding protein; Provisional

Probab=99.59  E-value=4.4e-15  Score=133.77  Aligned_cols=79  Identities=19%  Similarity=0.271  Sum_probs=72.7

Q ss_pred             CCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEecCC
Q 026963           20 SRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYASQ   99 (230)
Q Consensus        20 S~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA~e   99 (230)
                      .++|||+|||+.++++||+++|+.||+|++|.|+.+..   .+|||||+|++.++|..|+ .|||..|.|++|.|..++.
T Consensus         4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~Al-lLnG~~l~gr~V~Vt~a~~   79 (260)
T PLN03120          4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETAL-LLSGATIVDQSVTITPAED   79 (260)
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHH-HhcCCeeCCceEEEEeccC
Confidence            57899999999999999999999999999999998853   5799999999999999999 5999999999999999975


Q ss_pred             CCC
Q 026963          100 FES  102 (230)
Q Consensus       100 ~Es  102 (230)
                      ++.
T Consensus        80 ~~~   82 (260)
T PLN03120         80 YQL   82 (260)
T ss_pred             CCC
Confidence            543

>TIGR01645 half-pint poly-U binding splicing factor, half-pint family

Probab=99.59  E-value=4e-15  Score=147.20  Aligned_cols=80  Identities=19%  Similarity=0.260  Sum_probs=76.9

Q ss_pred             CCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEecC
Q 026963           19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYAS   98 (230)
Q Consensus        19 eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA~   98 (230)
                      ...+|||+|||..+++++|+++|+.||+|++|+++.|+.+++++|||||.|++.++|..|+..|||+.+.|+.|+|.+|.
T Consensus       203 ~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi  282 (612)
T TIGR01645       203 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV  282 (612)
T ss_pred             ccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecC
Confidence            34689999999999999999999999999999999999999999999999999999999999999999999999999983

In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.

>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]

Probab=99.58  E-value=5.1e-15  Score=127.13  Aligned_cols=82  Identities=27%  Similarity=0.369  Sum_probs=75.0

Q ss_pred             CCCCCCCCCcceeeeccCCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHH
Q 026963            1 MPRYKDEPPGVRVYTVCDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKR   80 (230)
Q Consensus         1 ~~~~~~~~~avkvytv~~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~   80 (230)
                      ||||.++...          +.|||+||+..+++.||+.+|+.||+|.+|-|...     +.|||||+|+++.||..|++
T Consensus         1 m~r~~~~~~~----------~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn-----PPGfAFVEFed~RDA~DAvr   65 (195)
T KOG0107|consen    1 MPRYRDRNGN----------TKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN-----PPGFAFVEFEDPRDAEDAVR   65 (195)
T ss_pred             CCcccccCCC----------ceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec-----CCCceEEeccCcccHHHHHh
Confidence            8888876554          45789999999999999999999999999998875     46999999999999999999


Q ss_pred             HhcCceeCCceeEEEec
Q 026963           81 KLDEFVFLGNRLKVSYA   97 (230)
Q Consensus        81 ~LnG~~f~Gr~L~VsyA   97 (230)
                      .|||+.|.|..++|+++
T Consensus        66 ~LDG~~~cG~r~rVE~S   82 (195)
T KOG0107|consen   66 YLDGKDICGSRIRVELS   82 (195)
T ss_pred             hcCCccccCceEEEEee
Confidence            99999999999999998

>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]

Probab=99.56  E-value=6.6e-15  Score=121.51  Aligned_cols=83  Identities=16%  Similarity=0.170  Sum_probs=79.3

Q ss_pred             CCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEecC
Q 026963           19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYAS   98 (230)
Q Consensus        19 eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA~   98 (230)
                      .|.+|||+||+..++|+.|++||+..|+|..|.+-.|+.+..+.||+||.|...++|..|++.++|+.+..++|+|+|-+
T Consensus        35 ~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D~  114 (153)
T KOG0121|consen   35 KSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWDA  114 (153)
T ss_pred             hcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeeccc
Confidence            58899999999999999999999999999999999999999999999999999999999999999999999999999986


Q ss_pred             CCC
Q 026963           99 QFE  101 (230)
Q Consensus        99 e~E  101 (230)
                      .++
T Consensus       115 GF~  117 (153)
T KOG0121|consen  115 GFV  117 (153)
T ss_pred             cch
Confidence            543

>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability

Probab=99.56  E-value=3.6e-14  Score=96.71  Aligned_cols=74  Identities=26%  Similarity=0.387  Sum_probs=69.4

Q ss_pred             eEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEe
Q 026963           22 YLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSY   96 (230)
Q Consensus        22 ~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~Vsy   96 (230)
                      +|+|+|||..+++++|.++|+.||+|..+.+..++.+ .++|+|||.|.+.++|..|++.++|..|.|+.++|.|
T Consensus         1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~   74 (74)
T cd00590           1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF   74 (74)
T ss_pred             CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence            4899999999999999999999999999999987654 7799999999999999999999999999999999975

This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).

>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family

Probab=99.53  E-value=3e-14  Score=136.26  Aligned_cols=77  Identities=23%  Similarity=0.343  Sum_probs=71.8

Q ss_pred             cCCCCeEEEcCCCC-CCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEE
Q 026963           17 CDESRYLIVRNVPS-LGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVS   95 (230)
Q Consensus        17 ~~eS~~LyV~NLP~-~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~Vs   95 (230)
                      +.++.+|||+|||+ .+++++|++||+.||.|.+|+++.+.     +|||||+|.+.++|..|+..|||..|.|++|+|+
T Consensus       272 ~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~  346 (481)
T TIGR01649       272 GGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK-----KETALIEMADPYQAQLALTHLNGVKLFGKPLRVC  346 (481)
T ss_pred             CCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEE
Confidence            45778999999997 58999999999999999999999863     6999999999999999999999999999999999


Q ss_pred             ecC
Q 026963           96 YAS   98 (230)
Q Consensus        96 yA~   98 (230)
                      ++.
T Consensus       347 ~s~  349 (481)
T TIGR01649       347 PSK  349 (481)
T ss_pred             Ecc
Confidence            984

Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).

>PF13893 RRM_5: RNA recognition motif

Probab=99.53  E-value=2.9e-14  Score=98.13  Aligned_cols=56  Identities=34%  Similarity=0.561  Sum_probs=51.8

Q ss_pred             HHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963           37 LLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA   97 (230)
Q Consensus        37 L~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA   97 (230)
                      |+++|++||+|+++.+..+.     +|+|||+|.+.++|..|++.|||..|.|++|+|+||
T Consensus         1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a   56 (56)
T PF13893_consen    1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA   56 (56)
T ss_dssp             HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred             ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence            78999999999999998763     589999999999999999999999999999999997

(a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....

>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]

Probab=99.52  E-value=1.4e-14  Score=127.55  Aligned_cols=78  Identities=24%  Similarity=0.279  Sum_probs=75.9

Q ss_pred             CCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963           20 SRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA   97 (230)
Q Consensus        20 S~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA   97 (230)
                      -..|.|-||..-++.++|..+|.+||.|-+|.|+.|+-|+.++|||||.|.+..+|+.|+++|||.++.|+.|+|++|
T Consensus        13 m~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~a   90 (256)
T KOG4207|consen   13 MTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMA   90 (256)
T ss_pred             ceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhh
Confidence            357999999999999999999999999999999999999999999999999999999999999999999999999998

>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]

Probab=99.52  E-value=3.3e-14  Score=136.05  Aligned_cols=83  Identities=25%  Similarity=0.351  Sum_probs=79.0

Q ss_pred             CeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEecCCC
Q 026963           21 RYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYASQF  100 (230)
Q Consensus        21 ~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA~e~  100 (230)
                      ..+||+|+|..+++++|..+|+..|.|.+++++.|++||+++|||||+|.+.++|..|++.|||.+|.|++|+|.|+...
T Consensus        19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~   98 (435)
T KOG0108|consen   19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR   98 (435)
T ss_pred             cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999644


Q ss_pred             CCh
Q 026963          101 ESL  103 (230)
Q Consensus       101 Es~  103 (230)
                      ...
T Consensus        99 ~~~  101 (435)
T KOG0108|consen   99 KNA  101 (435)
T ss_pred             chh
Confidence            433

>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.52  E-value=7.9e-15  Score=130.35  Aligned_cols=83  Identities=19%  Similarity=0.273  Sum_probs=79.3

Q ss_pred             cCCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEe
Q 026963           17 CDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSY   96 (230)
Q Consensus        17 ~~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~Vsy   96 (230)
                      ++.-++|||++|...+++.-|..-|-+||.|.+|.++.|+++++.||||||+|+..|||..||..||+.+++|+.|+|.|
T Consensus         7 a~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~   86 (298)
T KOG0111|consen    7 ANQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNL   86 (298)
T ss_pred             cccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEee
Confidence            34568999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCC
Q 026963           97 ASQ   99 (230)
Q Consensus        97 A~e   99 (230)
                      |.+
T Consensus        87 AkP   89 (298)
T KOG0111|consen   87 AKP   89 (298)
T ss_pred             cCC
Confidence            954

>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family

Probab=99.51  E-value=7.4e-14  Score=137.62  Aligned_cols=78  Identities=23%  Similarity=0.238  Sum_probs=73.0

Q ss_pred             CCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeC-CceeEEEec
Q 026963           19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFL-GNRLKVSYA   97 (230)
Q Consensus        19 eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~-Gr~L~VsyA   97 (230)
                      ...+|||+|||+.+++++|.++|++||+|.+|+|+.| .+++++|||||+|.+.++|..|++.|||..+. |+.|.|+.+
T Consensus        57 ~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S  135 (578)
T TIGR01648        57 RGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCIS  135 (578)
T ss_pred             CCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccccc
Confidence            3578999999999999999999999999999999999 78999999999999999999999999999996 788877766

Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.

>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family

Probab=99.51  E-value=5.6e-14  Score=134.36  Aligned_cols=156  Identities=11%  Similarity=0.084  Sum_probs=103.6

Q ss_pred             CCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHH--hcCceeCCceeEEEe
Q 026963           19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRK--LDEFVFLGNRLKVSY   96 (230)
Q Consensus        19 eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~--LnG~~f~Gr~L~Vsy   96 (230)
                      +|++|||+|||+.++++||+++|++||+|.+|.++++      +|||||+|++.++|..|++.  +++..+.|++|+|.|
T Consensus         1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~------k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~   74 (481)
T TIGR01649         1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG------KRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNY   74 (481)
T ss_pred             CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC------CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEe
Confidence            5899999999999999999999999999999999864      58999999999999999997  478999999999999


Q ss_pred             cCCCC--ChHHHHHHHHHHHHHHHHHhh-cCCCCCCCcccccc-cCCCCCCCCCCCCcchhhhhhhhccccccccccccc
Q 026963           97 ASQFE--SLADTKDKLETRRKEVLARLN-SGRSKVPNIHSSVD-LGEPSLVTAPLQPNLVSEQITSWQRASSESQRISHV  172 (230)
Q Consensus        97 A~e~E--s~~d~r~Kl~~rr~ev~~Rl~-~n~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (230)
                      +...+  +....  ........-...+- .|++..+++....+ +..+|   .++.+.+.+    .+.++ .+|..|...
T Consensus        75 s~~~~~~~~~~~--~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G---~V~~v~i~~----~~~~~-~afVef~~~  144 (481)
T TIGR01649        75 STSQEIKRDGNS--DFDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYG---KVLRIVTFT----KNNVF-QALVEFESV  144 (481)
T ss_pred             cCCcccccCCCC--cccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccC---CEEEEEEEe----cCCce-EEEEEECCH
Confidence            95322  11000  00000000000111 35555555555544 77777   333333322    11222 467777777


Q ss_pred             CCCCceeeccCccccccc
Q 026963          173 NESPITRVSSDKDYFASQ  190 (230)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~  190 (230)
                      .+|..+.-.+|-..|.+.
T Consensus       145 ~~A~~A~~~Lng~~i~~~  162 (481)
T TIGR01649       145 NSAQHAKAALNGADIYNG  162 (481)
T ss_pred             HHHHHHHHHhcCCcccCC
Confidence            777766666666655443

Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).

>PLN03121 nucleic acid binding protein; Provisional

Probab=99.49  E-value=1.3e-13  Score=123.17  Aligned_cols=80  Identities=16%  Similarity=0.235  Sum_probs=72.5

Q ss_pred             CCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEecC
Q 026963           19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYAS   98 (230)
Q Consensus        19 eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA~   98 (230)
                      ++.+|||+||++.++++||+++|+.||+|.+|.|+.|.   ..+|||||+|.++++|..|+ .|||..|.|++|.|.-+.
T Consensus         4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~It~~~   79 (243)
T PLN03121          4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAV-LLSGATIVDQRVCITRWG   79 (243)
T ss_pred             CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHH-hcCCCeeCCceEEEEeCc
Confidence            45689999999999999999999999999999999884   45689999999999999998 899999999999999876


Q ss_pred             CCCC
Q 026963           99 QFES  102 (230)
Q Consensus        99 e~Es  102 (230)
                      +++.
T Consensus        80 ~y~~   83 (243)
T PLN03121         80 QYED   83 (243)
T ss_pred             cccc
Confidence            5443

>PLN03213 repressor of silencing 3; Provisional

Probab=99.49  E-value=1.6e-13  Score=132.70  Aligned_cols=76  Identities=21%  Similarity=0.270  Sum_probs=70.8

Q ss_pred             CCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccH--hHHHHHHHHhcCceeCCceeEEEe
Q 026963           19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLF--SNARFAKRKLDEFVFLGNRLKVSY   96 (230)
Q Consensus        19 eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~--edA~~A~~~LnG~~f~Gr~L~Vsy   96 (230)
                      ..-+|||+||++.++++||..+|++||.|.+|.|+  ++||  ||||||.|...  .++.+||..|||..+.|+.|+|.-
T Consensus         9 ~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIp--RETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNK   84 (759)
T PLN03213          9 GGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFV--RTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEK   84 (759)
T ss_pred             cceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEe--cccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEee
Confidence            34689999999999999999999999999999999  5567  99999999987  789999999999999999999999


Q ss_pred             cC
Q 026963           97 AS   98 (230)
Q Consensus        97 A~   98 (230)
                      |.
T Consensus        85 AK   86 (759)
T PLN03213         85 AK   86 (759)
T ss_pred             cc
Confidence            93

>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]

Probab=99.46  E-value=1.4e-13  Score=133.98  Aligned_cols=89  Identities=22%  Similarity=0.280  Sum_probs=78.8

Q ss_pred             ccCCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEE
Q 026963           16 VCDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVS   95 (230)
Q Consensus        16 v~~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~Vs   95 (230)
                      |..+-..|+|+||||.+..++|+.+||.||.|.+|.|+...+ |+.+|||||+|.+..+|..|++.+||.+|.|+++-|+
T Consensus       113 v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~d-gklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVD  191 (678)
T KOG0127|consen  113 VDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKD-GKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVD  191 (678)
T ss_pred             ccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCC-CCccceEEEEEeeHHHHHHHHHhccCceecCceeEEe
Confidence            345677899999999999999999999999999999998776 5556999999999999999999999999999999999


Q ss_pred             ecCCCCChHH
Q 026963           96 YASQFESLAD  105 (230)
Q Consensus        96 yA~e~Es~~d  105 (230)
                      ||-+....++
T Consensus       192 WAV~Kd~ye~  201 (678)
T KOG0127|consen  192 WAVDKDTYED  201 (678)
T ss_pred             eecccccccc
Confidence            9965444443

>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]

Probab=99.46  E-value=3.5e-14  Score=129.81  Aligned_cols=140  Identities=18%  Similarity=0.204  Sum_probs=117.4

Q ss_pred             eEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEecCCCC
Q 026963           22 YLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYASQFE  101 (230)
Q Consensus        22 ~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA~e~E  101 (230)
                      .|||+|||..+++.+|+.||++||+|.+|.|+++        ||||..++...|+.||+.|+|+.+.|..|.|+-+   +
T Consensus         4 KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaS---k   72 (346)
T KOG0109|consen    4 KLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEAS---K   72 (346)
T ss_pred             chhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEec---c
Confidence            5999999999999999999999999999999987        8999999999999999999999999999999987   4


Q ss_pred             ChHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccc-cCCCCCCCCCCCCcchhhhhhhhcccccccccccccCCCCceee
Q 026963          102 SLADTKDKLETRRKEVLARLNSGRSKVPNIHSSVD-LGEPSLVTAPLQPNLVSEQITSWQRASSESQRISHVNESPITRV  180 (230)
Q Consensus       102 s~~d~r~Kl~~rr~ev~~Rl~~n~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (230)
                      +++.+.-|+-          -.|+...+..+..++ |.++|-+..|==           -++ .+|+|+.+..|+..+.-
T Consensus        73 sKsk~stkl~----------vgNis~tctn~ElRa~fe~ygpviecdi-----------vkd-y~fvh~d~~eda~~air  130 (346)
T KOG0109|consen   73 SKSKASTKLH----------VGNISPTCTNQELRAKFEKYGPVIECDI-----------VKD-YAFVHFDRAEDAVEAIR  130 (346)
T ss_pred             ccCCCccccc----------cCCCCccccCHHHhhhhcccCCceeeee-----------ecc-eeEEEEeeccchHHHHh
Confidence            4443333311          157777776666666 889997775511           345 79999999999999999


Q ss_pred             ccCcccccccCchh
Q 026963          181 SSDKDYFASQSMNQ  194 (230)
Q Consensus       181 ~~~~~~~~~~~~~~  194 (230)
                      +-|---|.++-|--
T Consensus       131 ~l~~~~~~gk~m~v  144 (346)
T KOG0109|consen  131 GLDNTEFQGKRMHV  144 (346)
T ss_pred             cccccccccceeee
Confidence            99999999888753

>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]

Probab=99.45  E-value=1.1e-13  Score=123.06  Aligned_cols=76  Identities=17%  Similarity=0.239  Sum_probs=70.8

Q ss_pred             CeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963           21 RYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA   97 (230)
Q Consensus        21 ~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA   97 (230)
                      +.|||+||||.+..++|++.|++||+|++++++.|+.|++++|||||+|.|.++|.+|.+..|- .++||+-.|..|
T Consensus        13 TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~p-iIdGR~aNcnlA   88 (247)
T KOG0149|consen   13 TKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNP-IIDGRKANCNLA   88 (247)
T ss_pred             EEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCC-cccccccccchh
Confidence            4799999999999999999999999999999999999999999999999999999999988763 678998888777

>smart00361 RRM_1 RNA recognition motif

Probab=99.43  E-value=4.2e-13  Score=96.98  Aligned_cols=62  Identities=18%  Similarity=0.224  Sum_probs=55.9

Q ss_pred             HHHHHHhhc----cCCcceEEE-eecCCCC--CCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEE
Q 026963           34 GDDLLKLFA----TYGDIEECK-PMDAEDC--DPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVS   95 (230)
Q Consensus        34 eedL~~LFS----~fG~I~~v~-il~d~~t--gksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~Vs   95 (230)
                      +++|.++|+    +||+|.+|. ++.+..+  +.++|||||.|.+.++|..|++.|||..|.|+.|+++
T Consensus         2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~   70 (70)
T smart00361        2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE   70 (70)
T ss_pred             chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence            578888888    999999995 6666666  8999999999999999999999999999999999874

>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]

Probab=99.43  E-value=2.3e-13  Score=125.98  Aligned_cols=76  Identities=22%  Similarity=0.286  Sum_probs=72.3

Q ss_pred             CCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963           20 SRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA   97 (230)
Q Consensus        20 S~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA   97 (230)
                      .++|+|.|+|+..-+.||...|.+||+|.+|.|+.++  .-+||||||+|++++||.+|-.+|||..+.||+|.|.-|
T Consensus        96 pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE--RGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~A  171 (376)
T KOG0125|consen   96 PKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE--RGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNA  171 (376)
T ss_pred             CceeEeecCCccccCccHHHHHHhhCceeeEEEEecc--CCCCccceEEecChhhHHHHHHHhhcceeeceEEEEecc
Confidence            4689999999999999999999999999999999875  458999999999999999999999999999999999988

>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family

Probab=99.41  E-value=8.3e-13  Score=130.25  Aligned_cols=73  Identities=25%  Similarity=0.357  Sum_probs=68.1

Q ss_pred             CCeEEEcCCCCCCCHHHHHHhhccC--CcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963           20 SRYLIVRNVPSLGCGDDLLKLFATY--GDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA   97 (230)
Q Consensus        20 S~~LyV~NLP~~~teedL~~LFS~f--G~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA   97 (230)
                      .++|||+|||+.+++++|+++|++|  |+|++|++++        |||||+|++.++|..|++.|||..|.|+.|+|+||
T Consensus       233 ~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~r--------gfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~A  304 (578)
T TIGR01648       233 VKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIR--------DYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLA  304 (578)
T ss_pred             ccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeec--------CeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence            5789999999999999999999999  9999998763        69999999999999999999999999999999999


Q ss_pred             CCC
Q 026963           98 SQF  100 (230)
Q Consensus        98 ~e~  100 (230)
                      .+.
T Consensus       305 kp~  307 (578)
T TIGR01648       305 KPV  307 (578)
T ss_pred             cCC
Confidence            543

Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.

>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]

Probab=99.40  E-value=7.4e-13  Score=120.21  Aligned_cols=78  Identities=18%  Similarity=0.282  Sum_probs=75.6

Q ss_pred             CCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963           20 SRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA   97 (230)
Q Consensus        20 S~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA   97 (230)
                      ..+|||.||.++..+.-|..||++||.|..|++++|..|.+++|||||.+.+-++|.-||..|||+.+.++.|+|+|-
T Consensus       278 g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFK  355 (360)
T KOG0145|consen  278 GWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFK  355 (360)
T ss_pred             eeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEe
Confidence            458999999999999999999999999999999999999999999999999999999999999999999999999996

>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]

Probab=99.40  E-value=8.1e-13  Score=121.09  Aligned_cols=81  Identities=19%  Similarity=0.233  Sum_probs=78.0

Q ss_pred             CCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963           18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA   97 (230)
Q Consensus        18 ~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA   97 (230)
                      ++=.||||.-|+.++++..|...|+.||+|+.+.++.|..||+++|||||+|++..+-..|-+..+|..+.|+.|-|+|-
T Consensus        99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvE  178 (335)
T KOG0113|consen   99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVE  178 (335)
T ss_pred             CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEec
Confidence            56689999999999999999999999999999999999999999999999999999999999999999999999999997


Q ss_pred             C
Q 026963           98 S   98 (230)
Q Consensus        98 ~   98 (230)
                      .
T Consensus       179 R  179 (335)
T KOG0113|consen  179 R  179 (335)
T ss_pred             c
Confidence            3

>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]

Probab=99.40  E-value=4.3e-13  Score=121.80  Aligned_cols=76  Identities=14%  Similarity=0.229  Sum_probs=74.7

Q ss_pred             eEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963           22 YLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA   97 (230)
Q Consensus        22 ~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA   97 (230)
                      +++|+-|...++.++|++-|.+||+|.+++|++|..|++++||+||.|.+.++|++||..|||..+.+|.|+..||
T Consensus        64 hvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWA  139 (321)
T KOG0148|consen   64 HVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWA  139 (321)
T ss_pred             eEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecccc
Confidence            6899999999999999999999999999999999999999999999999999999999999999999999999999

>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]

Probab=99.39  E-value=1.1e-12  Score=119.28  Aligned_cols=88  Identities=18%  Similarity=0.248  Sum_probs=79.2

Q ss_pred             CCCCcceeeeccCC-CCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcC
Q 026963            6 DEPPGVRVYTVCDE-SRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDE   84 (230)
Q Consensus         6 ~~~~avkvytv~~e-S~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG   84 (230)
                      +..+=..||.-..+ ++++||+|++...++++|++.|++||+|.+|++.++      +|||||.|++.|.|..||-.|||
T Consensus       149 ~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~------qGYaFVrF~tkEaAahAIv~mNn  222 (321)
T KOG0148|consen  149 KPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD------QGYAFVRFETKEAAAHAIVQMNN  222 (321)
T ss_pred             CCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc------cceEEEEecchhhHHHHHHHhcC
Confidence            44555667877764 568999999998999999999999999999999988      59999999999999999999999


Q ss_pred             ceeCCceeEEEecCC
Q 026963           85 FVFLGNRLKVSYASQ   99 (230)
Q Consensus        85 ~~f~Gr~L~VsyA~e   99 (230)
                      ..+.|..++++|-.+
T Consensus       223 tei~G~~VkCsWGKe  237 (321)
T KOG0148|consen  223 TEIGGQLVRCSWGKE  237 (321)
T ss_pred             ceeCceEEEEecccc
Confidence            999999999999953

>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]

Probab=99.39  E-value=3.9e-13  Score=116.21  Aligned_cols=80  Identities=20%  Similarity=0.244  Sum_probs=77.4

Q ss_pred             CCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963           18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA   97 (230)
Q Consensus        18 ~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA   97 (230)
                      +...+|||+||+..++++-|++||-+.|+|..+.+++|+.|...+|||||+|.+.|+|.-|++.||+..++|++|+|.-|
T Consensus         7 nqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ka   86 (203)
T KOG0131|consen    7 NQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKA   86 (203)
T ss_pred             CCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEec
Confidence            55679999999999999999999999999999999999999999999999999999999999999999999999999988

>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]

Probab=99.37  E-value=7.4e-13  Score=110.49  Aligned_cols=79  Identities=19%  Similarity=0.303  Sum_probs=76.2

Q ss_pred             CCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963           19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA   97 (230)
Q Consensus        19 eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA   97 (230)
                      ++..|||.++....+++|+.+.|+.||+|+.+.+-.|+.||-.+|||.|.|+..++|+.|+..|||..+.|..|.|.|+
T Consensus        71 EGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~  149 (170)
T KOG0130|consen   71 EGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWC  149 (170)
T ss_pred             eeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEE
Confidence            3457999999999999999999999999999999999999999999999999999999999999999999999999998

>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]

Probab=99.37  E-value=1.7e-12  Score=126.52  Aligned_cols=89  Identities=24%  Similarity=0.332  Sum_probs=79.6

Q ss_pred             CCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHh-----cC-ceeCCce
Q 026963           18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKL-----DE-FVFLGNR   91 (230)
Q Consensus        18 ~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~L-----nG-~~f~Gr~   91 (230)
                      ++..+|||+|||+++++++|+.+|++||+|.-+.|+.+++|+.++|.|||.|.+..+|..||.+.     +| ..+.|+.
T Consensus       290 ~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR~  369 (678)
T KOG0127|consen  290 TEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGRL  369 (678)
T ss_pred             cccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEeccE
Confidence            35689999999999999999999999999999999999999999999999999999999999987     55 7899999


Q ss_pred             eEEEecCCCCChHHH
Q 026963           92 LKVSYASQFESLADT  106 (230)
Q Consensus        92 L~VsyA~e~Es~~d~  106 (230)
                      |.|..|-.++-..++
T Consensus       370 Lkv~~Av~RkeA~dm  384 (678)
T KOG0127|consen  370 LKVTLAVTRKEAADM  384 (678)
T ss_pred             EeeeeccchHHHHHH
Confidence            999999443333333

>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]

Probab=99.35  E-value=1.5e-12  Score=124.41  Aligned_cols=70  Identities=26%  Similarity=0.346  Sum_probs=66.7

Q ss_pred             CeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEecC
Q 026963           21 RYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYAS   98 (230)
Q Consensus        21 ~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA~   98 (230)
                      +.|||+||+..+|++.|+++|++||.|+.|+.++|        ||||+|.+.++|.+|++.|||+++.|..|.|.+|.
T Consensus       260 KvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD--------YaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAK  329 (506)
T KOG0117|consen  260 KVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD--------YAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAK  329 (506)
T ss_pred             eeeeeeccchhhhHHHHHHHHHhccceEEeecccc--------eeEEeecchHHHHHHHHHhcCceecCceEEEEecC
Confidence            47999999999999999999999999999998855        99999999999999999999999999999999993

>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]

Probab=99.35  E-value=4.2e-12  Score=121.29  Aligned_cols=78  Identities=23%  Similarity=0.268  Sum_probs=74.6

Q ss_pred             CCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeC-CceeEEEec
Q 026963           20 SRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFL-GNRLKVSYA   97 (230)
Q Consensus        20 S~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~-Gr~L~VsyA   97 (230)
                      ..-|||+.||.++.|+||.-||.+-|+|-++++|.|+.+|.+||||||.|.+.++|+.|++.||+++|. |+.|.||.+
T Consensus        83 G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~S  161 (506)
T KOG0117|consen   83 GCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCVS  161 (506)
T ss_pred             CceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEEe
Confidence            567999999999999999999999999999999999999999999999999999999999999999995 888998876

>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]

Probab=99.35  E-value=2.1e-13  Score=129.82  Aligned_cols=179  Identities=18%  Similarity=0.182  Sum_probs=125.3

Q ss_pred             ccCCC-CeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeC-C--ce
Q 026963           16 VCDES-RYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFL-G--NR   91 (230)
Q Consensus        16 v~~eS-~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~-G--r~   91 (230)
                      ++|++ -.|||+.+|..++|.||+.||++||.|.+|.|++|+.|+.++|||||.|...++|..|+.+|++.... |  .+
T Consensus        29 ~~d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~p  108 (510)
T KOG0144|consen   29 NPDGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHP  108 (510)
T ss_pred             CCCchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcc
Confidence            34433 47999999999999999999999999999999999999999999999999999999999999987654 4  58


Q ss_pred             eEEEecCCCCChHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccc-cCCCCCCCCCCCCcchhhhhhhhccccccccccc
Q 026963           92 LKVSYASQFESLADTKDKLETRRKEVLARLNSGRSKVPNIHSSVD-LGEPSLVTAPLQPNLVSEQITSWQRASSESQRIS  170 (230)
Q Consensus        92 L~VsyA~e~Es~~d~r~Kl~~rr~ev~~Rl~~n~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (230)
                      ++|.||   +...+..  .+.++-.|     .-+++.+.+...++ |.++|..-.   .-+|+-.+ ..+|| -+|+.|+
T Consensus       109 vqvk~A---d~E~er~--~~e~KLFv-----g~lsK~~te~evr~iFs~fG~Ied---~~ilrd~~-~~sRG-caFV~fs  173 (510)
T KOG0144|consen  109 VQVKYA---DGERERI--VEERKLFV-----GMLSKQCTENEVREIFSRFGHIED---CYILRDPD-GLSRG-CAFVKFS  173 (510)
T ss_pred             eeeccc---chhhhcc--ccchhhhh-----hhccccccHHHHHHHHHhhCccch---hhheeccc-ccccc-eeEEEEe
Confidence            999999   2111110  11111122     23666776667777 888995442   22222211 23677 6777777


Q ss_pred             ccCCCCceeeccCcc-cccccCchhhHHHHHHHHhhhhcc
Q 026963          171 HVNESPITRVSSDKD-YFASQSMNQTVRLVREKLNKIESS  209 (230)
Q Consensus       171 ~~~~~~~~~~~~~~~-~~~~~~~~~~v~~v~~~~~~~~~~  209 (230)
                      --.-|-.+.-++|.- =.++-|-|+-|||---+=||-+..
T Consensus       174 tke~A~~Aika~ng~~tmeGcs~PLVVkFADtqkdk~~~~  213 (510)
T KOG0144|consen  174 TKEMAVAAIKALNGTQTMEGCSQPLVVKFADTQKDKDGKR  213 (510)
T ss_pred             hHHHHHHHHHhhccceeeccCCCceEEEecccCCCchHHH
Confidence            655454444455543 367888888888865554444433

>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]

Probab=99.33  E-value=1.9e-12  Score=112.83  Aligned_cols=78  Identities=26%  Similarity=0.318  Sum_probs=70.6

Q ss_pred             CCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEecC
Q 026963           19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYAS   98 (230)
Q Consensus        19 eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA~   98 (230)
                      .+.+|||+|||.++-+.|+.+||.+||.|.+|.+..-   .....||||+|+++.+|..||..-||+.|.|..|+|+|+.
T Consensus         5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r---~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfpr   81 (241)
T KOG0105|consen    5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNR---PGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPR   81 (241)
T ss_pred             ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccC---CCCCCeeEEEecCccchhhhhhcccccccCcceEEEEecc
Confidence            4678999999999999999999999999999987543   2345799999999999999999999999999999999995


Q ss_pred             C
Q 026963           99 Q   99 (230)
Q Consensus        99 e   99 (230)
                      -
T Consensus        82 g   82 (241)
T KOG0105|consen   82 G   82 (241)
T ss_pred             C
Confidence            4

>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]

Probab=99.31  E-value=3.3e-12  Score=121.75  Aligned_cols=78  Identities=26%  Similarity=0.378  Sum_probs=72.4

Q ss_pred             CCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCce-eCC--ceeEEE
Q 026963           19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFV-FLG--NRLKVS   95 (230)
Q Consensus        19 eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~-f~G--r~L~Vs   95 (230)
                      +.+.|||+-|+..++|.|+.++|++||.|++|.|++|.+ +.+||||||+|...+-|..||+.|||.. +.|  .+|.|.
T Consensus       123 ~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~-~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVk  201 (510)
T KOG0144|consen  123 EERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPD-GLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVK  201 (510)
T ss_pred             cchhhhhhhccccccHHHHHHHHHhhCccchhhheeccc-ccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEE
Confidence            457899999999999999999999999999999999965 8999999999999999999999999986 445  589999


Q ss_pred             ec
Q 026963           96 YA   97 (230)
Q Consensus        96 yA   97 (230)
                      ||
T Consensus       202 FA  203 (510)
T KOG0144|consen  202 FA  203 (510)
T ss_pred             ec
Confidence            99

>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor

Probab=99.27  E-value=1.2e-11  Score=116.84  Aligned_cols=81  Identities=12%  Similarity=0.175  Sum_probs=69.3

Q ss_pred             CCCeEEEcCCCCCC----------CHHHHHHhhccCCcceEEEeecC---CCCCCceeEEEEEEccHhHHHHHHHHhcCc
Q 026963           19 ESRYLIVRNVPSLG----------CGDDLLKLFATYGDIEECKPMDA---EDCDPFTDVYFIKFRLFSNARFAKRKLDEF   85 (230)
Q Consensus        19 eS~~LyV~NLP~~~----------teedL~~LFS~fG~I~~v~il~d---~~tgksrG~AFV~F~d~edA~~A~~~LnG~   85 (230)
                      ++.+|+|.||+...          ..++|+++|++||.|++|.|+.+   ..++...|+|||+|.+.++|..|+..|||.
T Consensus       408 ~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr  487 (509)
T TIGR01642       408 PTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGR  487 (509)
T ss_pred             CceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCC
Confidence            56789999997421          12679999999999999999875   234567899999999999999999999999


Q ss_pred             eeCCceeEEEecCC
Q 026963           86 VFLGNRLKVSYASQ   99 (230)
Q Consensus        86 ~f~Gr~L~VsyA~e   99 (230)
                      .|.|+.|.|.|.++
T Consensus       488 ~~~gr~v~~~~~~~  501 (509)
T TIGR01642       488 KFNDRVVVAAFYGE  501 (509)
T ss_pred             EECCeEEEEEEeCH
Confidence            99999999999953

Members of this subfamily are found in plants, metazoa and fungi.

>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]

Probab=99.26  E-value=5.6e-12  Score=122.45  Aligned_cols=77  Identities=27%  Similarity=0.304  Sum_probs=74.0

Q ss_pred             eEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEecC
Q 026963           22 YLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYAS   98 (230)
Q Consensus        22 ~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA~   98 (230)
                      .|||+||.++.++++|..+|.+||.|+.|.+++|.+||.++|||||+|.+.++|++|..+|||.++-|+.|+|+.-.
T Consensus       280 rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~  356 (549)
T KOG0147|consen  280 RLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVT  356 (549)
T ss_pred             hhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEee
Confidence            39999999999999999999999999999999998899999999999999999999999999999999999998753

>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]

Probab=99.26  E-value=8.8e-12  Score=117.09  Aligned_cols=74  Identities=22%  Similarity=0.389  Sum_probs=70.5

Q ss_pred             eEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEecC
Q 026963           22 YLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYAS   98 (230)
Q Consensus        22 ~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA~   98 (230)
                      .|||.||++.++..+|++.|+.||.|.+|+++.+.. | ++|| ||+|++.++|..|+..|||..+.|++|.|..+.
T Consensus        78 ~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~-g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~  151 (369)
T KOG0123|consen   78 LVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDEN-G-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFE  151 (369)
T ss_pred             eeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCC-C-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeecc
Confidence            399999999999999999999999999999999865 4 9999 999999999999999999999999999999884

>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]

Probab=99.20  E-value=1.6e-11  Score=122.19  Aligned_cols=92  Identities=18%  Similarity=0.309  Sum_probs=83.2

Q ss_pred             CCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEecCC
Q 026963           20 SRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYASQ   99 (230)
Q Consensus        20 S~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA~e   99 (230)
                      .+.|+|+|||+..+-.++..||+.||.|.+|.|++....+..+|||||.|..+.+|.+|+++|.++-++|+.|.++||..
T Consensus       613 ~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~~  692 (725)
T KOG0110|consen  613 GTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAKS  692 (725)
T ss_pred             cceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehhcc
Confidence            46899999999999999999999999999999998766678899999999999999999999999999999999999976


Q ss_pred             CCChHHHHHHHH
Q 026963          100 FESLADTKDKLE  111 (230)
Q Consensus       100 ~Es~~d~r~Kl~  111 (230)
                      ..+.++++.+..
T Consensus       693 d~~~e~~r~r~A  704 (725)
T KOG0110|consen  693 DNTMEALRERTA  704 (725)
T ss_pred             chHHHHHHHHHH
Confidence            666666666543

>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]

Probab=99.18  E-value=2.5e-11  Score=111.29  Aligned_cols=82  Identities=27%  Similarity=0.364  Sum_probs=72.4

Q ss_pred             CCcceeeeccC---CCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcC
Q 026963            8 PPGVRVYTVCD---ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDE   84 (230)
Q Consensus         8 ~~avkvytv~~---eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG   84 (230)
                      ..+|+|-.--+   .+++|.|+|+.+.++.+||+..|.+||+|.+|.|++|        |+||.|+-.++|..|++.|||
T Consensus        63 g~nInVeaSksKsk~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd--------y~fvh~d~~eda~~air~l~~  134 (346)
T KOG0109|consen   63 GVNINVEASKSKSKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD--------YAFVHFDRAEDAVEAIRGLDN  134 (346)
T ss_pred             ceEEEEEeccccCCCccccccCCCCccccCHHHhhhhcccCCceeeeeecc--------eeEEEEeeccchHHHHhcccc
Confidence            34444443322   5679999999999999999999999999999999975        899999999999999999999


Q ss_pred             ceeCCceeEEEec
Q 026963           85 FVFLGNRLKVSYA   97 (230)
Q Consensus        85 ~~f~Gr~L~VsyA   97 (230)
                      .+|+|++|+|+.+
T Consensus       135 ~~~~gk~m~vq~s  147 (346)
T KOG0109|consen  135 TEFQGKRMHVQLS  147 (346)
T ss_pred             cccccceeeeeee
Confidence            9999999999987

>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]

Probab=99.17  E-value=3.1e-11  Score=104.48  Aligned_cols=81  Identities=22%  Similarity=0.222  Sum_probs=76.1

Q ss_pred             CCCCeEEEcCCCCCCCHHHHHHhhccCCcceEE-EeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEe
Q 026963           18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEEC-KPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSY   96 (230)
Q Consensus        18 ~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v-~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~Vsy   96 (230)
                      +-+.+|||+||.+.+++.-|+++|+.||.|.+. +|+.+.+||.++|||||.|.+.+.+..|+..|||..+..+++.|+|
T Consensus        94 ~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~y  173 (203)
T KOG0131|consen   94 DVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSY  173 (203)
T ss_pred             cccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEEE
Confidence            345799999999999999999999999999874 8899999999999999999999999999999999999999999999


Q ss_pred             cC
Q 026963           97 AS   98 (230)
Q Consensus        97 A~   98 (230)
                      |-
T Consensus       174 a~  175 (203)
T KOG0131|consen  174 AF  175 (203)
T ss_pred             EE
Confidence            94

>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.15  E-value=5.3e-11  Score=111.71  Aligned_cols=82  Identities=21%  Similarity=0.343  Sum_probs=78.8

Q ss_pred             ccCCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEE
Q 026963           16 VCDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVS   95 (230)
Q Consensus        16 v~~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~Vs   95 (230)
                      +..|-..|||.-|.+.++++||+-+||.||+|.+|.++.|..||.+--||||+|++.++.+.|.-+|++.-+..+.|||.
T Consensus       235 ~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVD  314 (479)
T KOG0415|consen  235 VKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVD  314 (479)
T ss_pred             cCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEee
Confidence            45567889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ec
Q 026963           96 YA   97 (230)
Q Consensus        96 yA   97 (230)
                      |+
T Consensus       315 FS  316 (479)
T KOG0415|consen  315 FS  316 (479)
T ss_pred             hh
Confidence            99

>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]

Probab=99.15  E-value=3.5e-11  Score=109.77  Aligned_cols=85  Identities=20%  Similarity=0.236  Sum_probs=79.1

Q ss_pred             eecc-CCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCcee
Q 026963           14 YTVC-DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRL   92 (230)
Q Consensus        14 ytv~-~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L   92 (230)
                      +++. .++.+|||..||....+.||...|-+||.|++.++..|+.|..++.|+||.|+++.+|+.||.+|||+.+..+.|
T Consensus       278 qqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRL  357 (371)
T KOG0146|consen  278 QQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRL  357 (371)
T ss_pred             hhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhh
Confidence            3444 367799999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEecC
Q 026963           93 KVSYAS   98 (230)
Q Consensus        93 ~VsyA~   98 (230)
                      +|..-+
T Consensus       358 KVQLKR  363 (371)
T KOG0146|consen  358 KVQLKR  363 (371)
T ss_pred             hhhhcC
Confidence            999763

>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]

Probab=99.13  E-value=1.3e-10  Score=101.89  Aligned_cols=81  Identities=12%  Similarity=0.256  Sum_probs=75.4

Q ss_pred             CCCeEEEcCCCCCCCHHHHHHhhccC-CcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963           19 ESRYLIVRNVPSLGCGDDLLKLFATY-GDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA   97 (230)
Q Consensus        19 eS~~LyV~NLP~~~teedL~~LFS~f-G~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA   97 (230)
                      ...-+||..+|...-+.++...|.+| |.|..+++.+.+.||.++|||||+|++.+.|..|-+.||++-|+|+-|.|.|-
T Consensus        48 ~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vm  127 (214)
T KOG4208|consen   48 IEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVM  127 (214)
T ss_pred             CccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEe
Confidence            45679999999988899999999999 88888888899999999999999999999999999999999999999999998


Q ss_pred             CC
Q 026963           98 SQ   99 (230)
Q Consensus        98 ~e   99 (230)
                      |+
T Consensus       128 pp  129 (214)
T KOG4208|consen  128 PP  129 (214)
T ss_pred             Cc
Confidence            64

>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]

Probab=99.05  E-value=4.2e-10  Score=102.80  Aligned_cols=78  Identities=29%  Similarity=0.471  Sum_probs=72.2

Q ss_pred             CCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeC-C--ceeEEE
Q 026963           19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFL-G--NRLKVS   95 (230)
Q Consensus        19 eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~-G--r~L~Vs   95 (230)
                      +.+.|||+=|...-.|||++.||++||.|++|.++...+ |.++|+|||+|.+..+|..||..|+|..-. |  ..|.|.
T Consensus        18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~d-g~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK   96 (371)
T KOG0146|consen   18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPD-GNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVK   96 (371)
T ss_pred             cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCC-CCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEE
Confidence            567899999999899999999999999999999999876 899999999999999999999999998865 3  469999


Q ss_pred             ec
Q 026963           96 YA   97 (230)
Q Consensus        96 yA   97 (230)
                      ||
T Consensus        97 ~A   98 (371)
T KOG0146|consen   97 FA   98 (371)
T ss_pred             ec
Confidence            99

>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]

Probab=99.01  E-value=2.7e-10  Score=107.54  Aligned_cols=77  Identities=14%  Similarity=0.204  Sum_probs=74.1

Q ss_pred             CeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963           21 RYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA   97 (230)
Q Consensus        21 ~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA   97 (230)
                      .++||+.+.+..-++.|+.-|.+||+|+++++--|+.|++.+|||||+|+=+|.|+.|++.|||.++.|+-|+|...
T Consensus       114 cRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrP  190 (544)
T KOG0124|consen  114 CRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP  190 (544)
T ss_pred             HheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCC
Confidence            46999999999999999999999999999999999999999999999999999999999999999999999999865

>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]

Probab=98.99  E-value=8.4e-10  Score=110.05  Aligned_cols=77  Identities=22%  Similarity=0.242  Sum_probs=70.2

Q ss_pred             eEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCC---CceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEecC
Q 026963           22 YLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCD---PFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYAS   98 (230)
Q Consensus        22 ~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tg---ksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA~   98 (230)
                      .|||.||++.++.++|..+|..+|.|.+|.|.+.++-.   .+.|||||+|.++++|+.|++.|+|+.+.|+.|.|.|++
T Consensus       517 ~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~  596 (725)
T KOG0110|consen  517 KLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISE  596 (725)
T ss_pred             hhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEecc
Confidence            39999999999999999999999999999887765422   355999999999999999999999999999999999995

>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]

Probab=98.99  E-value=1.1e-09  Score=103.09  Aligned_cols=73  Identities=15%  Similarity=0.193  Sum_probs=68.7

Q ss_pred             CeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEecCC
Q 026963           21 RYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYASQ   99 (230)
Q Consensus        21 ~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA~e   99 (230)
                      ..|||+  | .+++.+|+++|+++|+|.++++.+|. |  +-|||||.|.++++|.+|++.||...+.|++++|.|+..
T Consensus         2 ~sl~vg--~-~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~r   74 (369)
T KOG0123|consen    2 ASLYVG--P-DVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQR   74 (369)
T ss_pred             CceecC--C-cCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhcc
Confidence            358999  4 69999999999999999999999998 6  999999999999999999999999999999999999953

>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]

Probab=98.95  E-value=1.3e-09  Score=109.69  Aligned_cols=74  Identities=27%  Similarity=0.368  Sum_probs=70.2

Q ss_pred             CCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEecCC
Q 026963           20 SRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYASQ   99 (230)
Q Consensus        20 S~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA~e   99 (230)
                      |+||||++||..+++.||..+|..||+|.+|.+.-.      +|+|||++....+|.+|+.+|..+.+.++.|+|.||-.
T Consensus       421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~------R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g  494 (894)
T KOG0132|consen  421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP------RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVG  494 (894)
T ss_pred             eeeeeeccccchhhHHHHHHHHHhcccceeEeeccC------CceeEEEEeehhHHHHHHHHHhcccccceeeEEeeecc
Confidence            799999999999999999999999999999998754      69999999999999999999999999999999999943

>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]

Probab=98.80  E-value=7.5e-09  Score=102.10  Aligned_cols=79  Identities=22%  Similarity=0.235  Sum_probs=74.0

Q ss_pred             CCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEecC
Q 026963           20 SRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYAS   98 (230)
Q Consensus        20 S~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA~   98 (230)
                      +++|||.+|+..+--.||+.||++||+|+-.+++.+..+.-.+.|+||++...++|.+||..|+-+++.|+.|.|.-|.
T Consensus       405 gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaK  483 (940)
T KOG4661|consen  405 GRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAK  483 (940)
T ss_pred             ccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeecc
Confidence            6799999999877779999999999999999999988777788999999999999999999999999999999999884

>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]

Probab=98.79  E-value=9.1e-09  Score=98.93  Aligned_cols=75  Identities=20%  Similarity=0.195  Sum_probs=69.1

Q ss_pred             CCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963           18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA   97 (230)
Q Consensus        18 ~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA   97 (230)
                      ..+.+|+|+|||.+.|+..|++.|-.||.|.-+.|+..   ++++|  .|.|.++++|+.|++.|||..+.|+.|.|.|.
T Consensus       534 rKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadime~---GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V~y~  608 (608)
T KOG4212|consen  534 RKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIMEN---GKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKVTYF  608 (608)
T ss_pred             ccccEEEEecCCccccHHHHHHHHHhccceehhhhhcc---CCccc--eEEecCHHHHHHHHHHhccCcccCceeeeeeC
Confidence            35668999999999999999999999999999998644   78887  89999999999999999999999999999984

>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]

Probab=98.78  E-value=2e-08  Score=90.16  Aligned_cols=80  Identities=20%  Similarity=0.218  Sum_probs=74.0

Q ss_pred             cCCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEe
Q 026963           17 CDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSY   96 (230)
Q Consensus        17 ~~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~Vsy   96 (230)
                      ..-+..|+|.|||..++++||.+||..||.++.+-+-.++ .|.+.|.|-|.|...++|..|++.+||..+.|++|++..
T Consensus        80 ~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~  158 (243)
T KOG0533|consen   80 ETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEI  158 (243)
T ss_pred             CCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEE
Confidence            3345789999999999999999999999999999988885 589999999999999999999999999999999999998


Q ss_pred             c
Q 026963           97 A   97 (230)
Q Consensus        97 A   97 (230)
                      .
T Consensus       159 i  159 (243)
T KOG0533|consen  159 I  159 (243)
T ss_pred             e
Confidence            7

>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]

Probab=98.74  E-value=8.4e-09  Score=96.41  Aligned_cols=79  Identities=18%  Similarity=0.173  Sum_probs=73.2

Q ss_pred             CCCeEEEcCCCCCCCHHHHHHhhccCCcceE--------EEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCc
Q 026963           19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEE--------CKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGN   90 (230)
Q Consensus        19 eS~~LyV~NLP~~~teedL~~LFS~fG~I~~--------v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr   90 (230)
                      -+++|||+|||.++|-+|..++|+++|-|..        |++..+.. |+.+|=|.|+|-..++...|+..||+..|.|.
T Consensus       133 ~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~-G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~  211 (382)
T KOG1548|consen  133 VNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQ-GKLKGDALCCYIKRESVELAIKILDEDELRGK  211 (382)
T ss_pred             cCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCC-CCccCceEEEeecccHHHHHHHHhCcccccCc
Confidence            4678999999999999999999999999965        78877755 99999999999999999999999999999999


Q ss_pred             eeEEEecC
Q 026963           91 RLKVSYAS   98 (230)
Q Consensus        91 ~L~VsyA~   98 (230)
                      .|+|+-|.
T Consensus       212 ~~rVerAk  219 (382)
T KOG1548|consen  212 KLRVERAK  219 (382)
T ss_pred             EEEEehhh
Confidence            99999883

>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]

Probab=98.72  E-value=2.1e-08  Score=94.90  Aligned_cols=77  Identities=19%  Similarity=0.282  Sum_probs=73.7

Q ss_pred             CeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963           21 RYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA   97 (230)
Q Consensus        21 ~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA   97 (230)
                      .+|||..+.++..++||+..|..||+|..|.+..++.++..+||+||+|.+..+-..|+..||-+-+.|..|+|--+
T Consensus       211 nRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~  287 (544)
T KOG0124|consen  211 NRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKC  287 (544)
T ss_pred             heEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEecccc
Confidence            57999999999999999999999999999999999999999999999999999999999999999999999999755

>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]

Probab=98.70  E-value=3.2e-08  Score=92.56  Aligned_cols=74  Identities=20%  Similarity=0.333  Sum_probs=66.2

Q ss_pred             CCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHH-HhcCceeCCceeEEEecC
Q 026963           20 SRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKR-KLDEFVFLGNRLKVSYAS   98 (230)
Q Consensus        20 S~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~-~LnG~~f~Gr~L~VsyA~   98 (230)
                      .++|||++|-+.+++.||.++|.+||+|+++.++..      +|+|||+|.+.++|+.|.. .+|-..+.|..|.|.|++
T Consensus       228 I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~------~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg~  301 (377)
T KOG0153|consen  228 IKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR------KGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWGR  301 (377)
T ss_pred             eeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc------cccceeeehhhHHHHHHHHhhcceeeecceEEEEEeCC
Confidence            469999999889999999999999999999999876      4799999999999999987 456666799999999995


Q ss_pred             C
Q 026963           99 Q   99 (230)
Q Consensus        99 e   99 (230)
                      .
T Consensus       302 ~  302 (377)
T KOG0153|consen  302 P  302 (377)
T ss_pred             C
Confidence            4

>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]

Probab=98.70  E-value=3.8e-08  Score=94.77  Aligned_cols=77  Identities=22%  Similarity=0.248  Sum_probs=71.1

Q ss_pred             CCeEEEcCCCCCCCHHHHHHhhc-cCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963           20 SRYLIVRNVPSLGCGDDLLKLFA-TYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA   97 (230)
Q Consensus        20 S~~LyV~NLP~~~teedL~~LFS-~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA   97 (230)
                      .+.+||.|+|.+..+.+|++||- +-|+|+=|.++.|. .++++|+|.|+|+++|.+++|++.||-+.+.|++|.|.=-
T Consensus        44 ~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~-~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd  121 (608)
T KOG4212|consen   44 DRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDE-SGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKED  121 (608)
T ss_pred             cceEEEecCcchhhhHhHHHHHHHhcCceEeeeeeccc-CCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEecc
Confidence            35699999999999999999995 68999999999985 5999999999999999999999999999999999999844

>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]

Probab=98.68  E-value=6.4e-08  Score=86.69  Aligned_cols=78  Identities=22%  Similarity=0.220  Sum_probs=67.7

Q ss_pred             CCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecC-CCCCCceeEEEEEEccHhHHHHHHHHhcCceeC---CceeEEE
Q 026963           20 SRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDA-EDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFL---GNRLKVS   95 (230)
Q Consensus        20 S~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d-~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~---Gr~L~Vs   95 (230)
                      -++|||.+||.++...||+.||-.|-.-+.+.+-.. +.....+-+|||+|.+.++|..|+++|||..|.   |..|+|+
T Consensus        34 VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhiE  113 (284)
T KOG1457|consen   34 VRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHIE  113 (284)
T ss_pred             cceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEee
Confidence            579999999999999999999999999988876543 222234569999999999999999999999997   6789999


Q ss_pred             ec
Q 026963           96 YA   97 (230)
Q Consensus        96 yA   97 (230)
                      +|
T Consensus       114 lA  115 (284)
T KOG1457|consen  114 LA  115 (284)
T ss_pred             eh
Confidence            99

>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]

Probab=98.67  E-value=1.9e-08  Score=93.13  Aligned_cols=82  Identities=16%  Similarity=0.216  Sum_probs=69.9

Q ss_pred             CCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEecC
Q 026963           19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYAS   98 (230)
Q Consensus        19 eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA~   98 (230)
                      ++..|+|++|+|.++++.|.+.|++||+|.+|.+++|+.|++++||+||+|.+++.-..++. ..-+.+.|+.+.+.-|-
T Consensus         5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dgr~ve~k~av   83 (311)
T KOG4205|consen    5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDGRSVEPKRAV   83 (311)
T ss_pred             CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeec-ccccccCCccccceecc
Confidence            67899999999999999999999999999999999999999999999999998886665544 33456778887777664


Q ss_pred             CCC
Q 026963           99 QFE  101 (230)
Q Consensus        99 e~E  101 (230)
                      .++
T Consensus        84 ~r~   86 (311)
T KOG4205|consen   84 SRE   86 (311)
T ss_pred             Ccc
Confidence            333

>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]

Probab=98.65  E-value=4.4e-08  Score=87.13  Aligned_cols=78  Identities=17%  Similarity=0.151  Sum_probs=74.8

Q ss_pred             CCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963           19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA   97 (230)
Q Consensus        19 eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA   97 (230)
                      ..+.+||+|+...++.+++...|+.||.|..+.++.|+.++.++|||||.|.+.+.++.|+. |||..+.|+.+.|++.
T Consensus       100 d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~~  177 (231)
T KOG4209|consen  100 DAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTLK  177 (231)
T ss_pred             CCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeeee
Confidence            46789999999999998999999999999999999999999999999999999999999999 9999999999999987

>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]

Probab=98.63  E-value=2e-08  Score=98.11  Aligned_cols=70  Identities=29%  Similarity=0.471  Sum_probs=64.1

Q ss_pred             CCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeE
Q 026963           19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLK   93 (230)
Q Consensus        19 eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~   93 (230)
                      +.++|+|.|||..+++++|..+|+.||+|.+|..     |...+|..||+|.|+.+|+.|+++|++..+.|+.|+
T Consensus        74 ~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~-----t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k  143 (549)
T KOG4660|consen   74 NQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRE-----TPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK  143 (549)
T ss_pred             ccceEEEEecCCcCCHHHHHHHHHhhcchhhhhc-----ccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence            3679999999999999999999999999998553     345679999999999999999999999999999998

>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]

Probab=98.60  E-value=5.7e-08  Score=97.53  Aligned_cols=84  Identities=19%  Similarity=0.256  Sum_probs=74.9

Q ss_pred             eeccCCC-CeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCC---CCCCceeEEEEEEccHhHHHHHHHHhcCceeCC
Q 026963           14 YTVCDES-RYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAE---DCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLG   89 (230)
Q Consensus        14 ytv~~eS-~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~---~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~G   89 (230)
                      ++..++. ++|||+||++.++++.|...|+.||+|..++|+-.+   +....+-+|||.|.+..||+.|++.|+|..+++
T Consensus       167 fDdgDP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~  246 (877)
T KOG0151|consen  167 FDDGDPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVME  246 (877)
T ss_pred             CCCCCCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeee
Confidence            5566665 589999999999999999999999999999998743   334566799999999999999999999999999


Q ss_pred             ceeEEEec
Q 026963           90 NRLKVSYA   97 (230)
Q Consensus        90 r~L~VsyA   97 (230)
                      .+|++-|+
T Consensus       247 ~e~K~gWg  254 (877)
T KOG0151|consen  247 YEMKLGWG  254 (877)
T ss_pred             eeeeeccc
Confidence            99999998

>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]

Probab=98.57  E-value=4.3e-08  Score=86.75  Aligned_cols=70  Identities=24%  Similarity=0.323  Sum_probs=65.0

Q ss_pred             CeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEecC
Q 026963           21 RYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYAS   98 (230)
Q Consensus        21 ~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA~   98 (230)
                      ..+||++||+.+.+.||..+|..||.|.+|.+..        ||+||.|+|..+|..|+.-|||..|.|..+.|+||.
T Consensus         2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~--------gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r   71 (216)
T KOG0106|consen    2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMKN--------GFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHAR   71 (216)
T ss_pred             CceeecccCCccchhHHHHHHhhccccccceeec--------ccceeccCchhhhhcccchhcCceecceeeeeeccc
Confidence            3589999999999999999999999999888653        799999999999999999999999999999999993

>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]

Probab=98.56  E-value=1.8e-07  Score=89.42  Aligned_cols=74  Identities=26%  Similarity=0.396  Sum_probs=67.4

Q ss_pred             CCeEEEcCCCCC-CCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEecC
Q 026963           20 SRYLIVRNVPSL-GCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYAS   98 (230)
Q Consensus        20 S~~LyV~NLP~~-~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA~   98 (230)
                      +..|.|.||... +|.+-|+.||+-||.|..|+|+..+     +..|.|+|.|...|+-|+..|+|..++|++|+|.|+.
T Consensus       297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nk-----kd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SK  371 (492)
T KOG1190|consen  297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNK-----KDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSK  371 (492)
T ss_pred             ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecC-----CcceeeeecchhHHHHHHHHhhcceecCceEEEeecc
Confidence            467999999875 5778899999999999999999874     2689999999999999999999999999999999983

>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]

Probab=98.51  E-value=3.8e-08  Score=87.84  Aligned_cols=79  Identities=15%  Similarity=0.115  Sum_probs=72.4

Q ss_pred             cCCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEe
Q 026963           17 CDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSY   96 (230)
Q Consensus        17 ~~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~Vsy   96 (230)
                      +...++|||.|+...++++-|.+||-+-|+|.+|.|.++++ ++.+ ||||.|++.-+...|+..|||-.++|.+++|.+
T Consensus         6 ae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d-~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~   83 (267)
T KOG4454|consen    6 AEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQD-QEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTL   83 (267)
T ss_pred             cchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCcc-CCCc-eeeeecccccchhhhhhhcccchhccchhhccc
Confidence            34568999999999999999999999999999999999887 4555 999999999999999999999999999999987


Q ss_pred             c
Q 026963           97 A   97 (230)
Q Consensus        97 A   97 (230)
                      -
T Consensus        84 r   84 (267)
T KOG4454|consen   84 R   84 (267)
T ss_pred             c
Confidence            4

>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2

Probab=98.50  E-value=9.8e-07  Score=69.29  Aligned_cols=77  Identities=14%  Similarity=0.111  Sum_probs=68.0

Q ss_pred             CeEEEcCCCCCCCHHHHHHhhcc--CCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeC----CceeEE
Q 026963           21 RYLIVRNVPSLGCGDDLLKLFAT--YGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFL----GNRLKV   94 (230)
Q Consensus        21 ~~LyV~NLP~~~teedL~~LFS~--fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~----Gr~L~V   94 (230)
                      +||-|+|+|...+.++|.+++..  .|...=+-++-|-.++-..|||||.|.+++.|..-.+.++|+.+.    .+.+.|
T Consensus         2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i   81 (97)
T PF04059_consen    2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI   81 (97)
T ss_pred             eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence            58999999999999887766544  477777888889889999999999999999999999999999986    578999


Q ss_pred             Eec
Q 026963           95 SYA   97 (230)
Q Consensus        95 syA   97 (230)
                      +||
T Consensus        82 ~yA   84 (97)
T PF04059_consen   82 SYA   84 (97)
T ss_pred             ehh
Confidence            999

It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).

>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]

Probab=98.44  E-value=3.8e-07  Score=87.55  Aligned_cols=77  Identities=18%  Similarity=0.192  Sum_probs=64.2

Q ss_pred             CCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963           20 SRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA   97 (230)
Q Consensus        20 S~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA   97 (230)
                      ..+|||+|||.+++.++|++.|..||+|+...|..-...++..+||||.|++.+++..|+.+- -..+.|+.|.|+=-
T Consensus       288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~As-p~~ig~~kl~Veek  364 (419)
T KOG0116|consen  288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEAS-PLEIGGRKLNVEEK  364 (419)
T ss_pred             ccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcC-ccccCCeeEEEEec
Confidence            456999999999999999999999999998877653322444499999999999999999887 66677889999843

>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]

Probab=98.39  E-value=5.2e-07  Score=83.62  Aligned_cols=78  Identities=15%  Similarity=0.235  Sum_probs=71.6

Q ss_pred             CCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963           19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA   97 (230)
Q Consensus        19 eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA   97 (230)
                      ....++|++||.++++++|++.|.+||.|..+.++.|..+...+||+||.|.+.++...+ -...-+.|.|+.+.|.-|
T Consensus        96 ~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv-~~~~f~~~~gk~vevkrA  173 (311)
T KOG4205|consen   96 RTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKV-TLQKFHDFNGKKVEVKRA  173 (311)
T ss_pred             ceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEecccccccee-cccceeeecCceeeEeec
Confidence            356899999999999999999999999999999999999999999999999998877766 456788999999999999

>KOG0226 consensus RNA-binding proteins [General function prediction only]

Probab=98.26  E-value=1.1e-06  Score=79.69  Aligned_cols=78  Identities=13%  Similarity=0.127  Sum_probs=72.3

Q ss_pred             CCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963           20 SRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA   97 (230)
Q Consensus        20 S~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA   97 (230)
                      .-.||.+-|...++.+-|-..|.+|-.....++++|..|++++||+||.|.++.++..|++.|||.-+..++|+.--.
T Consensus       190 DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRkS  267 (290)
T KOG0226|consen  190 DFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRKS  267 (290)
T ss_pred             cceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhhh
Confidence            347999999988899999999999999999999999999999999999999999999999999999999999876543

>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes

Probab=98.25  E-value=2.7e-06  Score=65.97  Aligned_cols=76  Identities=20%  Similarity=0.306  Sum_probs=48.6

Q ss_pred             CeEEEcCCCCCCCH----HHHHHhhccCCc-ceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEE
Q 026963           21 RYLIVRNVPSLGCG----DDLLKLFATYGD-IEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVS   95 (230)
Q Consensus        21 ~~LyV~NLP~~~te----edL~~LFS~fG~-I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~Vs   95 (230)
                      +.|||.|||.+...    .-|..|+.-+|- |.+|.          .|.|.|.|.+++.|.+|.+-|+|...+|+.|.|+
T Consensus         3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~----------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~   72 (90)
T PF11608_consen    3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS----------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS   72 (90)
T ss_dssp             EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred             cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe----------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence            46999999986655    448888888875 44331          2689999999999999999999999999999999


Q ss_pred             ecCCCCChHHH
Q 026963           96 YASQFESLADT  106 (230)
Q Consensus        96 yA~e~Es~~d~  106 (230)
                      |.|.-....++
T Consensus        73 ~~~~~r~~~~~   83 (90)
T PF11608_consen   73 FSPKNREFNET   83 (90)
T ss_dssp             SS--S------
T ss_pred             EcCCcccccCc
Confidence            99743333333

Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.

>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]

Probab=98.21  E-value=1.1e-06  Score=85.94  Aligned_cols=78  Identities=15%  Similarity=0.184  Sum_probs=75.0

Q ss_pred             CCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963           20 SRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA   97 (230)
Q Consensus        20 S~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA   97 (230)
                      ...+||+|||-..+++++.++...||++....++.+..+|.++||||.+|.++.....|+..|||..+.++.|.|..|
T Consensus       289 ~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A  366 (500)
T KOG0120|consen  289 PNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRA  366 (500)
T ss_pred             cchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehh
Confidence            346999999999999999999999999999999999999999999999999999999999999999999999999988

>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]

Probab=98.21  E-value=1.1e-06  Score=82.42  Aligned_cols=79  Identities=22%  Similarity=0.253  Sum_probs=74.1

Q ss_pred             CCCeEEEcCCCCCCCHHHHHHhhccCCcceE--------EEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCc
Q 026963           19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEE--------CKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGN   90 (230)
Q Consensus        19 eS~~LyV~NLP~~~teedL~~LFS~fG~I~~--------v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr   90 (230)
                      ...++||.+||..+++++|.+.|.++|.|..        +.|-+|++|++++|=|.|.|+|...|+.|+..+++..|.|.
T Consensus        65 ~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~gn  144 (351)
T KOG1995|consen   65 DNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCGN  144 (351)
T ss_pred             ccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccCC
Confidence            3458999999999999999999999999964        67778899999999999999999999999999999999999


Q ss_pred             eeEEEec
Q 026963           91 RLKVSYA   97 (230)
Q Consensus        91 ~L~VsyA   97 (230)
                      +|+|..|
T Consensus       145 ~ikvs~a  151 (351)
T KOG1995|consen  145 TIKVSLA  151 (351)
T ss_pred             Cchhhhh
Confidence            9999999

>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]

Probab=98.12  E-value=1.2e-06  Score=85.88  Aligned_cols=76  Identities=14%  Similarity=0.231  Sum_probs=72.0

Q ss_pred             CeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963           21 RYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA   97 (230)
Q Consensus        21 ~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA   97 (230)
                      +++++-.|+...++.||+++|+.+|+|.+|.++.|+.++.++|.|||+|.|.++...|+ .|.|..+.|-+|.|...
T Consensus       180 Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~ai-aLsGqrllg~pv~vq~s  255 (549)
T KOG0147|consen  180 RTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAI-ALSGQRLLGVPVIVQLS  255 (549)
T ss_pred             HHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHh-hhcCCcccCceeEeccc
Confidence            58888888888899999999999999999999999999999999999999999999998 99999999999999865

>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]

Probab=98.07  E-value=2.5e-06  Score=78.05  Aligned_cols=79  Identities=16%  Similarity=0.204  Sum_probs=73.9

Q ss_pred             CCCeEE-EcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963           19 ESRYLI-VRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA   97 (230)
Q Consensus        19 eS~~Ly-V~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA   97 (230)
                      ++.++| |.||++.+++++|+..|..+|.|..++++.++.++.++|||||.|.....+..|+.. +...+.|.++.+.+.
T Consensus       183 ~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  261 (285)
T KOG4210|consen  183 PSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEED  261 (285)
T ss_pred             ccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccC
Confidence            345555 999999999999999999999999999999999999999999999999999999998 899999999999999


Q ss_pred             C
Q 026963           98 S   98 (230)
Q Consensus        98 ~   98 (230)
                      +
T Consensus       262 ~  262 (285)
T KOG4210|consen  262 E  262 (285)
T ss_pred             C
Confidence            4

>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]

Probab=97.93  E-value=4.4e-05  Score=67.95  Aligned_cols=76  Identities=21%  Similarity=0.386  Sum_probs=69.7

Q ss_pred             cCCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeC-CceeEEE
Q 026963           17 CDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFL-GNRLKVS   95 (230)
Q Consensus        17 ~~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~-Gr~L~Vs   95 (230)
                      ..++..|++.|||..++.+.|..+|.+|+...+++.+...     .|.|||+|.+...|..|...|+|..+- ...|+|+
T Consensus       143 ~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~-----~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~  217 (221)
T KOG4206|consen  143 APPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPR-----SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQIT  217 (221)
T ss_pred             CCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCC-----CceeEEecchhhhhHHHhhhhccceeccCceEEec
Confidence            4567899999999998999999999999999999998753     489999999999999999999999998 8999999


Q ss_pred             ec
Q 026963           96 YA   97 (230)
Q Consensus        96 yA   97 (230)
                      ||
T Consensus       218 ~a  219 (221)
T KOG4206|consen  218 FA  219 (221)
T ss_pred             cc
Confidence            98

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=97.85  E-value=4e-05  Score=76.00  Aligned_cols=76  Identities=20%  Similarity=0.221  Sum_probs=63.2

Q ss_pred             CCCCeEEEcCCCCCCC------HHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCc-
Q 026963           18 DESRYLIVRNVPSLGC------GDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGN-   90 (230)
Q Consensus        18 ~eS~~LyV~NLP~~~t------eedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr-   90 (230)
                      ...+.+.|-|+|-...      ..-|.++|+++|+|..+.++.++++| .+||.|+.|.+..+|..|++.|||+.|.-+ 
T Consensus        56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~gg-tkG~lf~E~~~~~~A~~aVK~l~G~~ldknH  134 (698)
T KOG2314|consen   56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGG-TKGYLFVEYASMRDAKKAVKSLNGKRLDKNH  134 (698)
T ss_pred             CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCC-eeeEEEEEecChhhHHHHHHhcccceecccc
Confidence            3457899999995322      24478899999999999999888766 999999999999999999999999999754 


Q ss_pred             eeEE
Q 026963           91 RLKV   94 (230)
Q Consensus        91 ~L~V   94 (230)
                      .+.|
T Consensus       135 tf~v  138 (698)
T KOG2314|consen  135 TFFV  138 (698)
T ss_pred             eEEe
Confidence            4444

>COG5175 MOT2 Transcriptional repressor [Transcription]

Probab=97.84  E-value=3.4e-05  Score=72.92  Aligned_cols=77  Identities=18%  Similarity=0.285  Sum_probs=60.9

Q ss_pred             CeEEEcCCCCCCCHHH----H--HHhhccCCcceEEEeecCCCCCC-ceeE--EEEEEccHhHHHHHHHHhcCceeCCce
Q 026963           21 RYLIVRNVPSLGCGDD----L--LKLFATYGDIEECKPMDAEDCDP-FTDV--YFIKFRLFSNARFAKRKLDEFVFLGNR   91 (230)
Q Consensus        21 ~~LyV~NLP~~~teed----L--~~LFS~fG~I~~v~il~d~~tgk-srG~--AFV~F~d~edA~~A~~~LnG~~f~Gr~   91 (230)
                      .-+||-+||+.+..++    |  .+.|++||+|.++.+-+....-. -.|.  .||+|...++|.+||...||..+.|+.
T Consensus       115 NLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr~  194 (480)
T COG5175         115 NLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGRV  194 (480)
T ss_pred             ceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCce
Confidence            4579999998766655    4  47899999999998765431111 1222  399999999999999999999999999


Q ss_pred             eEEEec
Q 026963           92 LKVSYA   97 (230)
Q Consensus        92 L~VsyA   97 (230)
                      |+..|.
T Consensus       195 lkatYG  200 (480)
T COG5175         195 LKATYG  200 (480)
T ss_pred             EeeecC
Confidence            999985

>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]

Probab=97.80  E-value=1.3e-05  Score=71.09  Aligned_cols=79  Identities=27%  Similarity=0.283  Sum_probs=65.8

Q ss_pred             ceeeeccCC-CCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCC
Q 026963           11 VRVYTVCDE-SRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLG   89 (230)
Q Consensus        11 vkvytv~~e-S~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~G   89 (230)
                      ..-|-+... ...|.|.|++....+.+|.+.|.+||++....+        .++++||+|...++|..|+..|+|..+.|
T Consensus        89 ~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~--------~~~~~~v~Fs~~~da~ra~~~l~~~~~~~  160 (216)
T KOG0106|consen   89 SRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA--------RRNFAFVEFSEQEDAKRALEKLDGKKLNG  160 (216)
T ss_pred             hhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhh--------hccccceeehhhhhhhhcchhccchhhcC
Confidence            334444333 346889999998899999999999999954443        35799999999999999999999999999


Q ss_pred             ceeEEEec
Q 026963           90 NRLKVSYA   97 (230)
Q Consensus        90 r~L~VsyA   97 (230)
                      +.|.+.++
T Consensus       161 ~~l~~~~~  168 (216)
T KOG0106|consen  161 RRISVEKN  168 (216)
T ss_pred             ceeeeccc
Confidence            99999655

>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]

Probab=97.70  E-value=9.2e-05  Score=69.78  Aligned_cols=74  Identities=22%  Similarity=0.249  Sum_probs=61.8

Q ss_pred             CCeEEEcCCCC----CC-------CHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeC
Q 026963           20 SRYLIVRNVPS----LG-------CGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFL   88 (230)
Q Consensus        20 S~~LyV~NLP~----~~-------teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~   88 (230)
                      .++|.++|+=.    ..       .++||.+-+++||.|.+|.+...    .+.|++-|.|.+.++|..||+.|+|..|.
T Consensus       265 ~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~----hPdGvvtV~f~n~eeA~~ciq~m~GR~fd  340 (382)
T KOG1548|consen  265 DRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDR----HPDGVVTVSFRNNEEADQCIQTMDGRWFD  340 (382)
T ss_pred             CcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEecc----CCCceeEEEeCChHHHHHHHHHhcCeeec
Confidence            46888898631    11       23778888999999999998753    56799999999999999999999999999


Q ss_pred             CceeEEEec
Q 026963           89 GNRLKVSYA   97 (230)
Q Consensus        89 Gr~L~VsyA   97 (230)
                      |+.|+.+.-
T Consensus       341 gRql~A~i~  349 (382)
T KOG1548|consen  341 GRQLTASIW  349 (382)
T ss_pred             ceEEEEEEe
Confidence            999998754

>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]

Probab=97.65  E-value=4.6e-05  Score=68.65  Aligned_cols=65  Identities=20%  Similarity=0.172  Sum_probs=56.2

Q ss_pred             CCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeC
Q 026963           20 SRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFL   88 (230)
Q Consensus        20 S~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~   88 (230)
                      ..+|||-||...+++++|+.+|+.|-.....+|--.   + .-.+||+.|++++.|..||..|.|..+-
T Consensus       210 cstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~---~-g~~vaf~~~~~~~~at~am~~lqg~~~s  274 (284)
T KOG1457|consen  210 CSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRAR---G-GMPVAFADFEEIEQATDAMNHLQGNLLS  274 (284)
T ss_pred             hhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecC---C-CcceEeecHHHHHHHHHHHHHhhcceec
Confidence            468999999999999999999999999887776432   2 2358999999999999999999998874

>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]

Probab=97.54  E-value=0.00022  Score=70.02  Aligned_cols=64  Identities=19%  Similarity=0.220  Sum_probs=56.0

Q ss_pred             HHHHHhhccCCcceEEEeecCC---CCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEecC
Q 026963           35 DDLLKLFATYGDIEECKPMDAE---DCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYAS   98 (230)
Q Consensus        35 edL~~LFS~fG~I~~v~il~d~---~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA~   98 (230)
                      ++++.-++.||.|.+|.|..+.   .-....|--||+|.+.++++.|+..|.|..|.|+.+..+|-+
T Consensus       424 Edvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYyd  490 (500)
T KOG0120|consen  424 EDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYD  490 (500)
T ss_pred             HHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecC
Confidence            4566779999999999998872   224567889999999999999999999999999999999985

>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation

Probab=97.51  E-value=0.00059  Score=53.85  Aligned_cols=70  Identities=16%  Similarity=0.255  Sum_probs=44.3

Q ss_pred             eEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCc-----eeCCceeEEEe
Q 026963           22 YLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEF-----VFLGNRLKVSY   96 (230)
Q Consensus        22 ~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~-----~f~Gr~L~Vsy   96 (230)
                      .|.|.+++..++.++|+++|++||+|.=|......      .-|||.|.+.+.|+.|+.++...     .+.|..+.+..
T Consensus         3 il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~------~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~v   76 (105)
T PF08777_consen    3 ILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGD------TEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLEV   76 (105)
T ss_dssp             EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE-
T ss_pred             EEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCC------CEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEEE
Confidence            57889999989999999999999999877766542      36999999999999999988655     45566666654


Q ss_pred             c
Q 026963           97 A   97 (230)
Q Consensus        97 A   97 (230)
                      -
T Consensus        77 L   77 (105)
T PF08777_consen   77 L   77 (105)
T ss_dssp             -
T ss_pred             C
Confidence            4

It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.

>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif

Probab=97.48  E-value=0.00027  Score=49.38  Aligned_cols=53  Identities=23%  Similarity=0.457  Sum_probs=43.7

Q ss_pred             CCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHH
Q 026963           20 SRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAK   79 (230)
Q Consensus        20 S~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~   79 (230)
                      ++.|-|.+.|. ...+++...|..||+|.++.+...      .-+.+|+|.+..+|+.|+
T Consensus         1 ~~wI~V~Gf~~-~~~~~vl~~F~~fGeI~~~~~~~~------~~~~~l~y~~~~~ae~Al   53 (53)
T PF14605_consen    1 STWISVSGFPP-DLAEEVLEHFASFGEIVDIYVPES------TNWMYLKYKSRKDAEKAL   53 (53)
T ss_pred             CcEEEEEeECc-hHHHHHHHHHHhcCCEEEEEcCCC------CcEEEEEECCHHHHHhhC
Confidence            46788999996 455778889999999999887632      348999999999999884

>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]

Probab=97.47  E-value=6.2e-05  Score=68.29  Aligned_cols=64  Identities=23%  Similarity=0.369  Sum_probs=56.6

Q ss_pred             HHHHHhhc-cCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEecCC
Q 026963           35 DDLLKLFA-TYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYASQ   99 (230)
Q Consensus        35 edL~~LFS-~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA~e   99 (230)
                      +|+..-|+ +||+|+++++.+. -.....|-++|.|...++|+.|+..|||..|.|++|+..+.|-
T Consensus        83 Ed~f~E~~~kygEiee~~Vc~N-l~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pv  147 (260)
T KOG2202|consen   83 EDVFTELEDKYGEIEELNVCDN-LGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPV  147 (260)
T ss_pred             HHHHHHHHHHhhhhhhhhhhcc-cchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCc
Confidence            55666677 9999999988765 3467889999999999999999999999999999999999974

>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]

Probab=97.46  E-value=8.4e-05  Score=71.67  Aligned_cols=77  Identities=22%  Similarity=0.238  Sum_probs=61.8

Q ss_pred             CCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecC---CCC--CC--------ceeEEEEEEccHhHHHHHHHHhcC
Q 026963           18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDA---EDC--DP--------FTDVYFIKFRLFSNARFAKRKLDE   84 (230)
Q Consensus        18 ~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d---~~t--gk--------srG~AFV~F~d~edA~~A~~~LnG   84 (230)
                      .++++|.+-|||.+..-+.|.+||+.+|.|..|+|++-   +..  +.        .+-+|+|+|+..+.|.+|.+.|+.
T Consensus       229 l~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~  308 (484)
T KOG1855|consen  229 LPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNP  308 (484)
T ss_pred             cccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhch
Confidence            37899999999998888999999999999999999875   221  11        256899999999999999999976


Q ss_pred             ceeCCceeEE
Q 026963           85 FVFLGNRLKV   94 (230)
Q Consensus        85 ~~f~Gr~L~V   94 (230)
                      ..-+-.-|+|
T Consensus       309 e~~wr~glkv  318 (484)
T KOG1855|consen  309 EQNWRMGLKV  318 (484)
T ss_pred             hhhhhhcchh
Confidence            5544333433

>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]

Probab=97.43  E-value=0.00032  Score=67.60  Aligned_cols=85  Identities=22%  Similarity=0.266  Sum_probs=72.1

Q ss_pred             Ccceeee-ccCCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCcee
Q 026963            9 PGVRVYT-VCDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVF   87 (230)
Q Consensus         9 ~avkvyt-v~~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f   87 (230)
                      +++|=|- .+.++.+|...|+|..++++||+.+|..-|-..+.....    ++.+-+|.++++++|+|..|.-.|+.+.+
T Consensus       402 pgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff----~kd~kmal~q~~sveeA~~ali~~hnh~l  477 (492)
T KOG1190|consen  402 PGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFF----QKDRKMALPQLESVEEAIQALIDLHNHYL  477 (492)
T ss_pred             cccccccccCCchhheeeccCCcccchhHHHHhhhcCCceEEeeeec----CCCcceeecccCChhHhhhhccccccccC
Confidence            4455554 457899999999999999999999999999987665443    23456999999999999999999999999


Q ss_pred             CCc-eeEEEec
Q 026963           88 LGN-RLKVSYA   97 (230)
Q Consensus        88 ~Gr-~L~VsyA   97 (230)
                      .+. -|+|+|+
T Consensus       478 gen~hlRvSFS  488 (492)
T KOG1190|consen  478 GENHHLRVSFS  488 (492)
T ss_pred             CCCceEEEEee
Confidence            887 7999998

>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]

Probab=97.43  E-value=0.00021  Score=65.18  Aligned_cols=88  Identities=14%  Similarity=0.218  Sum_probs=70.3

Q ss_pred             CCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCC--------CCcee----EEEEEEccHhHHHHHHHHhcCcee
Q 026963           20 SRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDC--------DPFTD----VYFIKFRLFSNARFAKRKLDEFVF   87 (230)
Q Consensus        20 S~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~t--------gksrG----~AFV~F~d~edA~~A~~~LnG~~f   87 (230)
                      ...+|++|+|+.+...-|+++|++||.|-.|.+-...++        |.+++    =|||+|.+...|......|||.++
T Consensus        74 ~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~I  153 (278)
T KOG3152|consen   74 TGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPI  153 (278)
T ss_pred             ceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCcc
Confidence            357999999999999999999999999999988765443        22232    279999999999999999999999


Q ss_pred             CCce--------eEEEecCCCCChHHHHH
Q 026963           88 LGNR--------LKVSYASQFESLADTKD  108 (230)
Q Consensus        88 ~Gr~--------L~VsyA~e~Es~~d~r~  108 (230)
                      .|+.        ..+.|-|.++ +.++-+
T Consensus       154 ggkk~S~~~~dlWNmKYLprFK-W~hLTE  181 (278)
T KOG3152|consen  154 GGKKKSPFRDDLWNMKYLPRFK-WVHLTE  181 (278)
T ss_pred             CCCCCCchHHhhhhhhhccCcc-hHHHHH
Confidence            9974        5677777654 334433

>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]

Probab=97.42  E-value=0.00029  Score=68.81  Aligned_cols=79  Identities=16%  Similarity=0.166  Sum_probs=63.4

Q ss_pred             eccCCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEE
Q 026963           15 TVCDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKV   94 (230)
Q Consensus        15 tv~~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~V   94 (230)
                      ++..+...|-+++|||.+|++||.++|+-.+ |+.+.+.  +.+|+..|=|||+|.+.+++..|+++ |-..+..+-|.|
T Consensus         5 ~e~~~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~--r~~Gr~sGeA~Ve~~seedv~~Alkk-dR~~mg~RYIEV   80 (510)
T KOG4211|consen    5 NEGSTAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIP--RRNGRPSGEAYVEFTSEEDVEKALKK-DRESMGHRYIEV   80 (510)
T ss_pred             cCCCcceEEEecCCCccccHHHHHHHHhcCc-eeEEEEe--ccCCCcCcceEEEeechHHHHHHHHh-hHHHhCCceEEE
Confidence            3445566788999999999999999999986 6665554  45799999999999999999999764 555566667777


Q ss_pred             Eec
Q 026963           95 SYA   97 (230)
Q Consensus        95 syA   97 (230)
                      --+
T Consensus        81 f~~   83 (510)
T KOG4211|consen   81 FTA   83 (510)
T ss_pred             Ecc
Confidence            655

>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]

Probab=97.20  E-value=0.00058  Score=64.98  Aligned_cols=85  Identities=14%  Similarity=0.085  Sum_probs=69.0

Q ss_pred             eeeccCCCCeEEEcCCCCCCCHHHHHHhhccCCc--ceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCc
Q 026963           13 VYTVCDESRYLIVRNVPSLGCGDDLLKLFATYGD--IEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGN   90 (230)
Q Consensus        13 vytv~~eS~~LyV~NLP~~~teedL~~LFS~fG~--I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr   90 (230)
                      ||+-...--++||+||-|++|++||.+-...-|-  |.+++...++..|+++|||.|...+..+...-++.|--+.+.|.
T Consensus        73 ~~s~~Grk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ  152 (498)
T KOG4849|consen   73 ATSSEGRKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQ  152 (498)
T ss_pred             cccccCceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCC
Confidence            3554444458999999999999999888777663  45666677788899999999999999999999999999999997


Q ss_pred             -eeEEEec
Q 026963           91 -RLKVSYA   97 (230)
Q Consensus        91 -~L~VsyA   97 (230)
                       +...+|.
T Consensus       153 ~P~V~~~N  160 (498)
T KOG4849|consen  153 SPTVLSYN  160 (498)
T ss_pred             CCeeeccc
Confidence             4555666

>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]

Probab=97.16  E-value=0.0015  Score=62.63  Aligned_cols=75  Identities=20%  Similarity=0.310  Sum_probs=67.5

Q ss_pred             CCCeEEEcCCCCCC-CHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963           19 ESRYLIVRNVPSLG-CGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA   97 (230)
Q Consensus        19 eS~~LyV~NLP~~~-teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA   97 (230)
                      ++.-+.|.+|.... .-+.|..||=.||.|+.|+.|+.+     .|.|.|++-|....++|+..||+..++|..|.|+++
T Consensus       286 ~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk-----~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~S  360 (494)
T KOG1456|consen  286 PGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK-----PGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVS  360 (494)
T ss_pred             CCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc-----cceeEEEcCcHHHHHHHHHHhccCccccceEEEeec
Confidence            45678999998743 458899999999999999999875     389999999999999999999999999999999998


Q ss_pred             C
Q 026963           98 S   98 (230)
Q Consensus        98 ~   98 (230)
                      .
T Consensus       361 k  361 (494)
T KOG1456|consen  361 K  361 (494)
T ss_pred             c
Confidence            3

>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]

Probab=97.09  E-value=0.0017  Score=63.62  Aligned_cols=75  Identities=15%  Similarity=0.123  Sum_probs=61.4

Q ss_pred             CeEEEcCCCCCCCHHHHHHhhccCCcceE-EEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963           21 RYLIVRNVPSLGCGDDLLKLFATYGDIEE-CKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA   97 (230)
Q Consensus        21 ~~LyV~NLP~~~teedL~~LFS~fG~I~~-v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA   97 (230)
                      ..|-+|+||+.++++|+.+.|+--=.|.. +.++.++. ++++|=|||+|++.+.|++|+.. |...+..+-|.|--+
T Consensus       104 ~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~r-gR~tGEAfVqF~sqe~ae~Al~r-hre~iGhRYIEvF~S  179 (510)
T KOG4211|consen  104 GVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQR-GRPTGEAFVQFESQESAEIALGR-HRENIGHRYIEVFRS  179 (510)
T ss_pred             ceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCC-CCcccceEEEecCHHHHHHHHHH-HHHhhccceEEeehh
Confidence            46889999999999999999998877776 55566654 67999999999999999999765 445566677888766

>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]

Probab=97.08  E-value=0.0018  Score=62.11  Aligned_cols=74  Identities=18%  Similarity=0.161  Sum_probs=61.1

Q ss_pred             CCeEEEcCCCC--CCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCc--eeEEE
Q 026963           20 SRYLIVRNVPS--LGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGN--RLKVS   95 (230)
Q Consensus        20 S~~LyV~NLP~--~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr--~L~Vs   95 (230)
                      +..|.+.=|.+  -+|-+-|+.++-..|+|..|.|++.  ++   -+|.|+|++.+.|++|+.+|||.-++..  .|+|+
T Consensus       120 N~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk--ng---VQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIe  194 (494)
T KOG1456|consen  120 NKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK--NG---VQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIE  194 (494)
T ss_pred             CeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec--cc---eeeEEeechhHHHHHHHhhcccccccccceeEEEE
Confidence            44455544443  3577999999999999999999874  23   4899999999999999999999999865  79999


Q ss_pred             ecC
Q 026963           96 YAS   98 (230)
Q Consensus        96 yA~   98 (230)
                      ||.
T Consensus       195 yAk  197 (494)
T KOG1456|consen  195 YAK  197 (494)
T ss_pred             ecC
Confidence            994

>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []

Probab=97.00  E-value=0.0019  Score=51.04  Aligned_cols=77  Identities=17%  Similarity=0.239  Sum_probs=53.2

Q ss_pred             CCCeEEEcCCCCCCCHHHHHHhhccCCcceEEE-eecCC------CCCCceeEEEEEEccHhHHHHHHHHhcCceeCCce
Q 026963           19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECK-PMDAE------DCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNR   91 (230)
Q Consensus        19 eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~-il~d~------~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~   91 (230)
                      ....|.|.+.|+ .....+...|++||+|.+.. +.++.      .......+-.|+|.++.+|.+|+. -||..|.|..
T Consensus         5 ~~~wVtVFGfp~-~~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~   82 (100)
T PF05172_consen    5 SETWVTVFGFPP-SASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSL   82 (100)
T ss_dssp             GCCEEEEE---G-GGHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCE
T ss_pred             CCeEEEEEccCH-HHHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcE
Confidence            356799999997 47788999999999998875 11110      001223589999999999999986 5999999986


Q ss_pred             eE-EEec
Q 026963           92 LK-VSYA   97 (230)
Q Consensus        92 L~-VsyA   97 (230)
                      |- |.|.
T Consensus        83 mvGV~~~   89 (100)
T PF05172_consen   83 MVGVKPC   89 (100)
T ss_dssp             EEEEEE-
T ss_pred             EEEEEEc
Confidence            65 7776

This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.

>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]

Probab=97.00  E-value=9.5e-05  Score=75.86  Aligned_cols=88  Identities=18%  Similarity=0.140  Sum_probs=73.6

Q ss_pred             CeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEecCCC
Q 026963           21 RYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYASQF  100 (230)
Q Consensus        21 ~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA~e~  100 (230)
                      -++||+||+..+.++||...|+.||.|..+.+.-...++.++|.|++.|..+++|..|+...++..|.-..+-|+=.|-.
T Consensus       668 ~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~gK~~v~i~g~pf~  747 (881)
T KOG0128|consen  668 IKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFGKISVAISGPPFQ  747 (881)
T ss_pred             HHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhhhhhhheeCCCCC
Confidence            46899999999999999999999999999988767778999999999999999999999998888777555666644444


Q ss_pred             CChHHHHH
Q 026963          101 ESLADTKD  108 (230)
Q Consensus       101 Es~~d~r~  108 (230)
                      -+.++++.
T Consensus       748 gt~e~~k~  755 (881)
T KOG0128|consen  748 GTKEELKS  755 (881)
T ss_pred             CchHHHHh
Confidence            55555544

>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons

Probab=96.95  E-value=0.0023  Score=54.76  Aligned_cols=82  Identities=15%  Similarity=0.171  Sum_probs=54.9

Q ss_pred             CCCCeEEEcCCCCCCCHHHHHHhhcc-CCcc---eEEE--eecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCc-
Q 026963           18 DESRYLIVRNVPSLGCGDDLLKLFAT-YGDI---EECK--PMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGN-   90 (230)
Q Consensus        18 ~eS~~LyV~NLP~~~teedL~~LFS~-fG~I---~~v~--il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr-   90 (230)
                      .+...|.||+||+..+++++.+.+++ +|.-   ..+.  ..........-.-|||.|.+.++...-++.+||+.|... 
T Consensus         5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~k   84 (176)
T PF03467_consen    5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSK   84 (176)
T ss_dssp             ----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TT
T ss_pred             ccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCC
Confidence            34568999999999999999998888 7776   2332  222111122345699999999999999999999999753 


Q ss_pred             ----eeEEEecCC
Q 026963           91 ----RLKVSYASQ   99 (230)
Q Consensus        91 ----~L~VsyA~e   99 (230)
                          +-.|.|||-
T Consensus        85 g~~~~~~VE~Apy   97 (176)
T PF03467_consen   85 GNEYPAVVEFAPY   97 (176)
T ss_dssp             S-EEEEEEEE-SS
T ss_pred             CCCcceeEEEcch
Confidence                577999974

Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.

>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]

Probab=96.91  E-value=0.0024  Score=65.16  Aligned_cols=75  Identities=19%  Similarity=0.161  Sum_probs=66.7

Q ss_pred             eEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEe
Q 026963           22 YLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSY   96 (230)
Q Consensus        22 ~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~Vsy   96 (230)
                      .|-++|+|++++-+|+.++|.-|-.+-.-.+++--+.|..+|=|.|-|++.++|+.|..-||++.+..+.+.+.+
T Consensus       869 V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i  943 (944)
T KOG4307|consen  869 VLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI  943 (944)
T ss_pred             EEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence            688999999999999999999999997555555456699999999999999999999999999999999887753

>PF15023 DUF4523: Protein of unknown function (DUF4523)

Probab=96.82  E-value=0.0051  Score=52.28  Aligned_cols=75  Identities=16%  Similarity=0.212  Sum_probs=59.9

Q ss_pred             CCCCeEEEcCCCCCCCH-HHHH---HhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeE
Q 026963           18 DESRYLIVRNVPSLGCG-DDLL---KLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLK   93 (230)
Q Consensus        18 ~eS~~LyV~NLP~~~te-edL~---~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~   93 (230)
                      .+-.+|.|+=|..++.. +||.   ...+.||+|.+|.+.-       +--|.|.|.|..+|..|+.++.. .--|.-++
T Consensus        84 pPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG-------rqsavVvF~d~~SAC~Av~Af~s-~~pgtm~q  155 (166)
T PF15023_consen   84 PPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG-------RQSAVVVFKDITSACKAVSAFQS-RAPGTMFQ  155 (166)
T ss_pred             CCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC-------CceEEEEehhhHHHHHHHHhhcC-CCCCceEE
Confidence            45678999888776543 5554   5689999999998753       24699999999999999999987 66788899


Q ss_pred             EEecCCC
Q 026963           94 VSYASQF  100 (230)
Q Consensus        94 VsyA~e~  100 (230)
                      ++|...+
T Consensus       156 CsWqqrF  162 (166)
T PF15023_consen  156 CSWQQRF  162 (166)
T ss_pred             eeccccc
Confidence            9998544

>KOG1996 consensus mRNA splicing factor [RNA processing and modification]

Probab=96.74  E-value=0.0031  Score=58.88  Aligned_cols=64  Identities=16%  Similarity=0.164  Sum_probs=53.4

Q ss_pred             HHHHHHhhccCCcceEEEeecCCCCCCce-eEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963           34 GDDLLKLFATYGDIEECKPMDAEDCDPFT-DVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA   97 (230)
Q Consensus        34 eedL~~LFS~fG~I~~v~il~d~~tgksr-G~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA   97 (230)
                      +++..+-+.+||+|..|.|...+.-..-. ---||+|+..++|.+|+-.|||.-|.|+.+..+|-
T Consensus       300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fy  364 (378)
T KOG1996|consen  300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFY  364 (378)
T ss_pred             HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheec
Confidence            46778899999999999887764322111 23799999999999999999999999999999987

>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]

Probab=96.71  E-value=0.0014  Score=59.82  Aligned_cols=68  Identities=28%  Similarity=0.208  Sum_probs=60.1

Q ss_pred             CeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCC
Q 026963           21 RYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLG   89 (230)
Q Consensus        21 ~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~G   89 (230)
                      ..|||.||+..+..+.|..-|+.||+|+...+..|. .+++.|=++|.|...-.|..|.+.+...-|.|
T Consensus        32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~-r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~   99 (275)
T KOG0115|consen   32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDD-RGKPTREGIVEFAKKPNARKAARRCREGGFGG   99 (275)
T ss_pred             ceEEEEecchhhhhHHHHHhhhhcCccchheeeecc-cccccccchhhhhcchhHHHHHHHhccCcccc
Confidence            789999999999999999999999999987776663 48899999999999999999999996666654

>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]

Probab=96.66  E-value=0.0014  Score=63.59  Aligned_cols=150  Identities=18%  Similarity=0.087  Sum_probs=95.7

Q ss_pred             CeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCce-eCCceeEEEecCC
Q 026963           21 RYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFV-FLGNRLKVSYASQ   99 (230)
Q Consensus        21 ~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~-f~Gr~L~VsyA~e   99 (230)
                      ..||++||.+..+..||..+|..-      ++.....----.||+||.+.+..-|..|++.++|+. +.|+++.|.+..+
T Consensus         2 nklyignL~p~~~psdl~svfg~a------k~~~~g~fl~k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~   75 (584)
T KOG2193|consen    2 NKLYIGNLSPQVTPSDLESVFGDA------KIPGSGQFLVKSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVP   75 (584)
T ss_pred             CcccccccCCCCChHHHHHHhccc------cCCCCcceeeecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhh
Confidence            469999999999999999999865      222111111124899999999999999999999975 8899999998831


Q ss_pred             CCChHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccc-cCCCCCCCCCCCCcchhhhhhhhcccc---cccccccccCCC
Q 026963          100 FESLADTKDKLETRRKEVLARLNSGRSKVPNIHSSVD-LGEPSLVTAPLQPNLVSEQITSWQRAS---SESQRISHVNES  175 (230)
Q Consensus       100 ~Es~~d~r~Kl~~rr~ev~~Rl~~n~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~  175 (230)
                         +     +...|...+     .|.|.+..|.---. ++.||...+|-.+|.=..++--|.--+   ..-+...+..-+
T Consensus        76 ---k-----kqrsrk~Qi-----rnippql~wevld~Ll~qyg~ve~~eqvnt~~etavvnvty~~~~~~~~ai~kl~g~  142 (584)
T KOG2193|consen   76 ---K-----KQRSRKIQI-----RNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSETAVVNVTYSAQQQHRQAIHKLNGP  142 (584)
T ss_pred             ---H-----HHHhhhhhH-----hcCCHHHHHHHHHHHHhccCCHhHhhhhccchHHHHHHHHHHHHHHHHHHHHhhcch
Confidence               1     111111111     36677666654333 788998888877775444443322111   122333445555


Q ss_pred             CceeeccCcccccc
Q 026963          176 PITRVSSDKDYFAS  189 (230)
Q Consensus       176 ~~~~~~~~~~~~~~  189 (230)
                      .+--+.--..|+|.
T Consensus       143 Q~en~~~k~~YiPd  156 (584)
T KOG2193|consen  143 QLENQHLKVGYIPD  156 (584)
T ss_pred             HhhhhhhhcccCch
Confidence            55555555556654

>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]

Probab=96.53  E-value=0.0029  Score=65.74  Aligned_cols=74  Identities=18%  Similarity=0.183  Sum_probs=65.6

Q ss_pred             CCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCC--ceeEEE
Q 026963           18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLG--NRLKVS   95 (230)
Q Consensus        18 ~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~G--r~L~Vs   95 (230)
                      .+++.|+|++|+.++...-|...|..||+|..|.+-.    |  --||+|+|++...|+.|++.|-|..|.|  +.|+|.
T Consensus       453 t~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~h----g--q~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvd  526 (975)
T KOG0112|consen  453 TPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRH----G--QPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVD  526 (975)
T ss_pred             ccceeeccCCCCCCChHHHHHHHhhccCcceeeeccc----C--CcceeeecccCccchhhHHHHhcCcCCCCCcccccc
Confidence            4678899999999888899999999999999876532    2  2499999999999999999999999998  579999


Q ss_pred             ec
Q 026963           96 YA   97 (230)
Q Consensus        96 yA   97 (230)
                      ||
T Consensus       527 la  528 (975)
T KOG0112|consen  527 LA  528 (975)
T ss_pred             cc
Confidence            99

>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]

Probab=96.42  E-value=0.0013  Score=67.78  Aligned_cols=76  Identities=12%  Similarity=0.077  Sum_probs=69.4

Q ss_pred             CeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963           21 RYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA   97 (230)
Q Consensus        21 ~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA   97 (230)
                      ..|+|+|+|+..|.++|+.+|+.+|.+.+..++..+. |+++|.|||.|.+..+|..+...+++..+.-+.+.|..+
T Consensus       737 ~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~-gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vs  812 (881)
T KOG0128|consen  737 ISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRA-GKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVS  812 (881)
T ss_pred             hhhheeCCCCCCchHHHHhhccccCCccccchhhhhc-cccccceeccCCCcchhhhhcccchhhhhhhcCcccccc
Confidence            4689999999999999999999999999999877754 899999999999999999999999999998887777765

>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]

Probab=96.34  E-value=0.013  Score=57.84  Aligned_cols=80  Identities=15%  Similarity=0.141  Sum_probs=67.8

Q ss_pred             CCCCCCCCcceeeecc------------CCCCeEEEcCCCCCCCHHHHHHhhc-cCCcceEEEeecCCCCCCceeEEEEE
Q 026963            2 PRYKDEPPGVRVYTVC------------DESRYLIVRNVPSLGCGDDLLKLFA-TYGDIEECKPMDAEDCDPFTDVYFIK   68 (230)
Q Consensus         2 ~~~~~~~~avkvytv~------------~eS~~LyV~NLP~~~teedL~~LFS-~fG~I~~v~il~d~~tgksrG~AFV~   68 (230)
                      |+.|+++.-|+=|-+.            ++.+|+||++||.-.+-+||..+|. .||.|.=+-|=.|++-+=++|-|=|.
T Consensus       340 ~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVt  419 (520)
T KOG0129|consen  340 PTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVT  419 (520)
T ss_pred             CcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceee
Confidence            5666666555555544            4678999999999899999999999 99999999998888888899999999


Q ss_pred             EccHhHHHHHHHH
Q 026963           69 FRLFSNARFAKRK   81 (230)
Q Consensus        69 F~d~edA~~A~~~   81 (230)
                      |.+..+=.+||.+
T Consensus       420 FsnqqsYi~AIsa  432 (520)
T KOG0129|consen  420 FSNQQAYIKAISA  432 (520)
T ss_pred             ecccHHHHHHHhh
Confidence            9999999988875

>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells

Probab=96.32  E-value=0.011  Score=51.25  Aligned_cols=60  Identities=27%  Similarity=0.387  Sum_probs=47.5

Q ss_pred             CHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhc--CceeCCceeEEEecC
Q 026963           33 CGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLD--EFVFLGNRLKVSYAS   98 (230)
Q Consensus        33 teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~Ln--G~~f~Gr~L~VsyA~   98 (230)
                      ..+.|.++|..|+.+.+...++.     + +-..|.|.+.++|..|+..|+  +..|.|..|+|-|+.
T Consensus         8 ~~~~l~~l~~~~~~~~~~~~L~s-----F-rRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~   69 (184)
T PF04847_consen    8 NLAELEELFSTYDPPVQFSPLKS-----F-RRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQ   69 (184)
T ss_dssp             -HHHHHHHHHTT-SS-EEEEETT-----T-TEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE---
T ss_pred             hHHHHHHHHHhcCCceEEEEcCC-----C-CEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcc
Confidence            34789999999999999998865     2 458999999999999999999  999999999999994

Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.

>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]

Probab=96.14  E-value=0.013  Score=51.82  Aligned_cols=61  Identities=23%  Similarity=0.322  Sum_probs=57.2

Q ss_pred             eEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCC
Q 026963           22 YLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLG   89 (230)
Q Consensus        22 ~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~G   89 (230)
                      .+.|++||+...++||+++.-.-|.|.-..+.+|       |++.|.|...|+-.-|+++|+...|..
T Consensus       117 RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD-------g~GvV~~~r~eDMkYAvr~ld~~~~~s  177 (241)
T KOG0105|consen  117 RVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD-------GVGVVEYLRKEDMKYAVRKLDDQKFRS  177 (241)
T ss_pred             eEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-------cceeeeeeehhhHHHHHHhhccccccC
Confidence            6899999999999999999999999998888777       799999999999999999999999875

>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]

Probab=96.11  E-value=0.0074  Score=58.16  Aligned_cols=88  Identities=16%  Similarity=0.175  Sum_probs=74.2

Q ss_pred             CCeEEEcCCCCCCCHHHHHHhhccCCcceE---EEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEe
Q 026963           20 SRYLIVRNVPSLGCGDDLLKLFATYGDIEE---CKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSY   96 (230)
Q Consensus        20 S~~LyV~NLP~~~teedL~~LFS~fG~I~~---v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~Vsy   96 (230)
                      ..+|.+|+||...+-+|+.+.|..|..-+.   |.++.+. -|.+.|=|||+|.+.++|..|....+.+...++.|.|--
T Consensus       280 kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~-qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp  358 (508)
T KOG1365|consen  280 KDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNG-QGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFP  358 (508)
T ss_pred             CCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcC-CCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEee
Confidence            458999999999999999999999987665   5666553 388999999999999999999999999888899998876


Q ss_pred             cCCCCChHHHHHHHHH
Q 026963           97 ASQFESLADTKDKLET  112 (230)
Q Consensus        97 A~e~Es~~d~r~Kl~~  112 (230)
                      +    +.+|+.+-|.+
T Consensus       359 ~----S~eeln~vL~~  370 (508)
T KOG1365|consen  359 C----SVEELNEVLSG  370 (508)
T ss_pred             c----cHHHHHHHHhc
Confidence            6    77788765544

>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function

Probab=96.07  E-value=0.03  Score=47.27  Aligned_cols=71  Identities=24%  Similarity=0.302  Sum_probs=53.3

Q ss_pred             CCCCeEEEcCCCCCCC-----H----HHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeC
Q 026963           18 DESRYLIVRNVPSLGC-----G----DDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFL   88 (230)
Q Consensus        18 ~eS~~LyV~NLP~~~t-----e----edL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~   88 (230)
                      .+..++.|+=+.+...     .    .+|.+.|+.||+|.=++...+        .-||+|.+-++|-+|+ .|||..+.
T Consensus        25 PpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaal-s~dg~~v~   95 (146)
T PF08952_consen   25 PPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAAL-SLDGIQVN   95 (146)
T ss_dssp             -TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHH-HGCCSEET
T ss_pred             CCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHH-ccCCcEEC
Confidence            4566777766552111     1    478899999999998887754        5899999999999885 68999999


Q ss_pred             CceeEEEec
Q 026963           89 GNRLKVSYA   97 (230)
Q Consensus        89 Gr~L~VsyA   97 (230)
                      |+.|+|..-
T Consensus        96 g~~l~i~LK  104 (146)
T PF08952_consen   96 GRTLKIRLK  104 (146)
T ss_dssp             TEEEEEEE-
T ss_pred             CEEEEEEeC
Confidence            999999975

; PDB: 1UFW_A 2DNR_A.

>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]

Probab=95.96  E-value=0.0096  Score=57.41  Aligned_cols=76  Identities=21%  Similarity=0.278  Sum_probs=63.5

Q ss_pred             CeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCC---CCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963           21 RYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAE---DCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA   97 (230)
Q Consensus        21 ~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~---~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA   97 (230)
                      ..|-|-||.+..+.++++.||+-.|+|.++.++...   .+....-.|||.|.|...+..| ..|-++.|-|+.|.|--+
T Consensus         8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~va-QhLtntvfvdraliv~p~   86 (479)
T KOG4676|consen    8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVA-QHLTNTVFVDRALIVRPY   86 (479)
T ss_pred             ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHH-hhhccceeeeeeEEEEec
Confidence            368899999999999999999999999999987632   3345567899999999999888 567778888888776644

>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN)

Probab=95.84  E-value=0.037  Score=43.04  Aligned_cols=53  Identities=17%  Similarity=0.301  Sum_probs=40.8

Q ss_pred             EEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcC
Q 026963           23 LIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDE   84 (230)
Q Consensus        23 LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG   84 (230)
                      .+|. .|...-..||.+||+.||.|. |.-+.|       .-|||...+.+.|..|+..++-
T Consensus        12 Fhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~d-------TSAfV~l~~r~~~~~v~~~~~~   64 (87)
T PF08675_consen   12 FHLT-FPKEWKTSDIYQLFSPFGQIY-VSWIND-------TSAFVALHNRDQAKVVMNTLKK   64 (87)
T ss_dssp             EEEE---TT--HHHHHHHCCCCCCEE-EEEECT-------TEEEEEECCCHHHHHHHHHHTT
T ss_pred             EEEe-CchHhhhhhHHHHhccCCcEE-EEEEcC-------CcEEEEeecHHHHHHHHHHhcc
Confidence            4455 999999999999999999997 444454       3699999999999999999963

; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.

>KOG2068 consensus MOT2 transcription factor [Transcription]

Probab=95.67  E-value=0.0042  Score=58.26  Aligned_cols=76  Identities=21%  Similarity=0.223  Sum_probs=60.4

Q ss_pred             CeEEEcCCCCCCC-HHHHH--HhhccCCcceEEEeecCCC----CCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeE
Q 026963           21 RYLIVRNVPSLGC-GDDLL--KLFATYGDIEECKPMDAED----CDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLK   93 (230)
Q Consensus        21 ~~LyV~NLP~~~t-eedL~--~LFS~fG~I~~v~il~d~~----tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~   93 (230)
                      .-+||-+||...- +..|.  +-|++||.|.++.+-.+..    .+-+. -++|+|+..++|..||...+|....|+.|+
T Consensus        78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~-s~yITy~~~eda~rci~~v~g~~~dg~~lk  156 (327)
T KOG2068|consen   78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTC-SVYITYEEEEDADRCIDDVDGFVDDGRALK  156 (327)
T ss_pred             hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCC-cccccccchHhhhhHHHHhhhHHhhhhhhH
Confidence            4577888886543 34455  6699999999999887652    12222 389999999999999999999999999988


Q ss_pred             EEec
Q 026963           94 VSYA   97 (230)
Q Consensus        94 VsyA   97 (230)
                      .+|.
T Consensus       157 a~~g  160 (327)
T KOG2068|consen  157 ASLG  160 (327)
T ss_pred             HhhC
Confidence            8887

>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]

Probab=95.58  E-value=0.028  Score=55.56  Aligned_cols=79  Identities=13%  Similarity=0.034  Sum_probs=54.6

Q ss_pred             eccCCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeec--CCCCCCcee---EEEEEEccHhHHHHHHHHhcCceeCC
Q 026963           15 TVCDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMD--AEDCDPFTD---VYFIKFRLFSNARFAKRKLDEFVFLG   89 (230)
Q Consensus        15 tv~~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~--d~~tgksrG---~AFV~F~d~edA~~A~~~LnG~~f~G   89 (230)
                      ....=|+.+||++||++++|++|...|.+||.+.-==..+  ...-..++|   |+|+.|++..+.+.-+.+.   .+.+
T Consensus       254 ~~~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC---~~~~  330 (520)
T KOG0129|consen  254 RSPRYSRKVFVGGLPWDITEAQINASFGQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSAC---SEGE  330 (520)
T ss_pred             CccccccceeecCCCccccHHHHHhhcccccceEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHH---hhcc
Confidence            3344478999999999999999999999999986211101  111234567   9999999998887655554   3344


Q ss_pred             ceeEEEe
Q 026963           90 NRLKVSY   96 (230)
Q Consensus        90 r~L~Vsy   96 (230)
                      ..+.++.
T Consensus       331 ~~~yf~v  337 (520)
T KOG0129|consen  331 GNYYFKV  337 (520)
T ss_pred             cceEEEE
Confidence            4444433

>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]

Probab=94.80  E-value=0.0013  Score=63.80  Aligned_cols=78  Identities=29%  Similarity=0.416  Sum_probs=67.4

Q ss_pred             CCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEecC
Q 026963           19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYAS   98 (230)
Q Consensus        19 eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA~   98 (230)
                      .|+.+-|+|+|+...++-|..|..+||.++.|..+..   ..-+-+--|+|...+.++.|+..|+|..|....++|.|-|
T Consensus        79 rsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt---~~etavvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~YiP  155 (584)
T KOG2193|consen   79 RSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNT---DSETAVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGYIP  155 (584)
T ss_pred             HhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhcc---chHHHHHHHHHHHHHHHHHHHHhhcchHhhhhhhhcccCc
Confidence            4677999999999999999999999999999976432   2223456788999999999999999999999999999997


Q ss_pred             C
Q 026963           99 Q   99 (230)
Q Consensus        99 e   99 (230)
                      +
T Consensus       156 d  156 (584)
T KOG2193|consen  156 D  156 (584)
T ss_pred             h
Confidence            5

>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function

Probab=94.59  E-value=0.15  Score=37.25  Aligned_cols=53  Identities=23%  Similarity=0.222  Sum_probs=44.6

Q ss_pred             CeEEEcCCCCCCCHHHHHHhhccC----CcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHh
Q 026963           21 RYLIVRNVPSLGCGDDLLKLFATY----GDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKL   82 (230)
Q Consensus        21 ~~LyV~NLP~~~teedL~~LFS~f----G~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~L   82 (230)
                      ..|+|+||. ..+.+|++..|..|    |+. .|.-+.|.       -|=|.|.+.+.|..|+.+|
T Consensus         6 eavhirGvd-~lsT~dI~~y~~~y~~~~~~~-~IEWIdDt-------ScNvvf~d~~~A~~AL~~L   62 (62)
T PF10309_consen    6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEGPF-RIEWIDDT-------SCNVVFKDEETAARALVAL   62 (62)
T ss_pred             ceEEEEcCC-CCCHHHHHHHHHHhcccCCCc-eEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence            469999997 58999999999999    544 57777773       4889999999999999875

>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]

Probab=94.31  E-value=0.1  Score=50.55  Aligned_cols=60  Identities=22%  Similarity=0.210  Sum_probs=46.8

Q ss_pred             eEEEcCCCCCCCHHHHHHhhccCCcc----eEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHh
Q 026963           22 YLIVRNVPSLGCGDDLLKLFATYGDI----EECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKL   82 (230)
Q Consensus        22 ~LyV~NLP~~~teedL~~LFS~fG~I----~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~L   82 (230)
                      .|..|+||++.++.|+.+.|.+--+|    +.|-.+. +..|+.+|=|||.|...++|+.|+.+=
T Consensus       163 ivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~-rpdgrpTGdAFvlfa~ee~aq~aL~kh  226 (508)
T KOG1365|consen  163 IVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVT-RPDGRPTGDAFVLFACEEDAQFALRKH  226 (508)
T ss_pred             EEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEE-CCCCCcccceEEEecCHHHHHHHHHHH
Confidence            45679999999999999999754333    3444333 334899999999999999999998753

>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]

Probab=94.26  E-value=0.062  Score=54.25  Aligned_cols=73  Identities=18%  Similarity=0.227  Sum_probs=59.6

Q ss_pred             CCCeEEEcCCCCCCCHHHHHHhhc-cCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeC---CceeEE
Q 026963           19 ESRYLIVRNVPSLGCGDDLLKLFA-TYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFL---GNRLKV   94 (230)
Q Consensus        19 eS~~LyV~NLP~~~teedL~~LFS-~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~---Gr~L~V   94 (230)
                      .|..|||.||-.-.|.-.|+.|++ ..|.|++. -| |    +-+-.|||.|.+.++|..-..+|||..+-   ++-|-+
T Consensus       443 ~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~-Wm-D----kIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~a  516 (718)
T KOG2416|consen  443 PSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF-WM-D----KIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIA  516 (718)
T ss_pred             ccceEeeecccccchHHHHHHHHhhccCchHHH-HH-H----HhhcceeEecccHHHHHHHHHHHhccccCCCCCceeEe
Confidence            467899999987789999999999 55555555 33 2    23457999999999999999999999873   567999


Q ss_pred             Eec
Q 026963           95 SYA   97 (230)
Q Consensus        95 syA   97 (230)
                      .|+
T Consensus       517 df~  519 (718)
T KOG2416|consen  517 DFV  519 (718)
T ss_pred             eec
Confidence            998

>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes

Probab=94.22  E-value=0.16  Score=37.43  Aligned_cols=54  Identities=22%  Similarity=0.230  Sum_probs=45.5

Q ss_pred             CCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEE
Q 026963           32 GCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKV   94 (230)
Q Consensus        32 ~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~V   94 (230)
                      .+-+|++..+-.|+-..   |+.|+     +| .||.|.+..+|++|.+..||..|.+..|..
T Consensus        12 ~~v~d~K~~Lr~y~~~~---I~~d~-----tG-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M   65 (66)
T PF11767_consen   12 VTVEDFKKRLRKYRWDR---IRDDR-----TG-FYIVFNDSKEAERCFRAEDGTLFFTYRMQM   65 (66)
T ss_pred             ccHHHHHHHHhcCCcce---EEecC-----CE-EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence            46699999999999865   44553     35 799999999999999999999999988765

This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].

>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]

Probab=93.19  E-value=0.14  Score=52.81  Aligned_cols=78  Identities=14%  Similarity=0.052  Sum_probs=61.8

Q ss_pred             CCCeEEEcCCCCCCCHHHHHHhhccCCcceE-EEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963           19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEE-CKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA   97 (230)
Q Consensus        19 eS~~LyV~NLP~~~teedL~~LFS~fG~I~~-v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA   97 (230)
                      -..+|||..||..+++.++.+.|..--.|++ |.|.. -.+++-++.|||.|..++.+..|..--.-+-+..+.|+|.-.
T Consensus       433 ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~-~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si  511 (944)
T KOG4307|consen  433 AGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTR-LPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSI  511 (944)
T ss_pred             ccceEEeccCCccccccchhhhhhhhhhhhheeEecc-CCcccccchhhheeccccccchhhhcccccccCceEEEeech
Confidence            4568999999998888999999999999998 44444 356888999999999999888886554444444578888743

>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]

Probab=93.00  E-value=0.31  Score=45.90  Aligned_cols=70  Identities=19%  Similarity=0.271  Sum_probs=56.4

Q ss_pred             CCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeE-EEec
Q 026963           20 SRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLK-VSYA   97 (230)
Q Consensus        20 S~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~-VsyA   97 (230)
                      ...+-|.+.|+ ....-+..+|++||.|.+......   |   -+-+|.|...-+|++|+.+ ||+.|.|..+. |.-.
T Consensus       197 D~WVTVfGFpp-g~~s~vL~~F~~cG~Vvkhv~~~n---g---NwMhirYssr~~A~KALsk-ng~ii~g~vmiGVkpC  267 (350)
T KOG4285|consen  197 DTWVTVFGFPP-GQVSIVLNLFSRCGEVVKHVTPSN---G---NWMHIRYSSRTHAQKALSK-NGTIIDGDVMIGVKPC  267 (350)
T ss_pred             cceEEEeccCc-cchhHHHHHHHhhCeeeeeecCCC---C---ceEEEEecchhHHHHhhhh-cCeeeccceEEeeeec
Confidence            45788999997 567889999999999998876532   3   4899999999999999865 89999988643 5543

>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]

Probab=92.64  E-value=0.074  Score=55.52  Aligned_cols=70  Identities=19%  Similarity=0.218  Sum_probs=58.4

Q ss_pred             EEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeC--CceeEEEecC
Q 026963           23 LIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFL--GNRLKVSYAS   98 (230)
Q Consensus        23 LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~--Gr~L~VsyA~   98 (230)
                      .++.|.+-..+..-|..||+.||.|.+...+++-      ..|.|.|...+.|..|.++|+|++..  |.|-+|.||.
T Consensus       301 ~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~------N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak  372 (1007)
T KOG4574|consen  301 QSLENNAVNLTSSSLATLCSDYGSVASAWTLRDL------NMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAK  372 (1007)
T ss_pred             hhhhcccccchHHHHHHHHHhhcchhhheecccc------cchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecc
Confidence            3444445445567799999999999999988763      47999999999999999999999964  8899999993

>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]

Probab=92.55  E-value=0.25  Score=49.31  Aligned_cols=54  Identities=9%  Similarity=-0.088  Sum_probs=43.6

Q ss_pred             CCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeC----CceeEEEec
Q 026963           44 YGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFL----GNRLKVSYA   97 (230)
Q Consensus        44 fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~----Gr~L~VsyA   97 (230)
                      .|.=.-+.++.|-.+....|||||.|.+++++..+.++.||+.+.    .+.+.+.||
T Consensus       413 ~gtYDFlYLPiDF~nkcNvGYAFINm~sp~ai~~F~kAFnGk~W~~FnS~Kia~itYA  470 (549)
T KOG4660|consen  413 KGTYDFLYLPIDFKNKCNVGYAFINMTSPEAIIRFYKAFNGKKWEKFNSEKIASITYA  470 (549)
T ss_pred             cCccceEEeccccccccccceeEEeecCHHHHHHHHHHHcCCchhhhcceeeeeeehh
Confidence            555555556666566677899999999999999999999999864    367889999

>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]

Probab=92.33  E-value=0.046  Score=57.13  Aligned_cols=78  Identities=14%  Similarity=0.096  Sum_probs=65.9

Q ss_pred             CCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963           19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA   97 (230)
Q Consensus        19 eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA   97 (230)
                      .+++|+++||+...++.+|.-.|..||.|.+|.|-.... +.---||||.|.+...|-.|+-.+.|..+....+++-|.
T Consensus       371 atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~-~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG  448 (975)
T KOG0112|consen  371 ATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHI-KTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLG  448 (975)
T ss_pred             hhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCC-CcccchhhhhhhccccCcccchhhcCCccccCccccccc
Confidence            478999999999999999999999999999998755422 333458999999999999999999999887666666655

>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []

Probab=90.76  E-value=3.2  Score=33.23  Aligned_cols=76  Identities=18%  Similarity=0.127  Sum_probs=55.5

Q ss_pred             CCeEEE-cCCCCCCCHHHHHHhhccCCcce-EEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCC---ceeEE
Q 026963           20 SRYLIV-RNVPSLGCGDDLLKLFATYGDIE-ECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLG---NRLKV   94 (230)
Q Consensus        20 S~~LyV-~NLP~~~teedL~~LFS~fG~I~-~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~G---r~L~V   94 (230)
                      +..|.| -..|..+.-++|..+.+.+-... .++|++|.  ...+=.+.++|.+.++|..-....||+.|..   ..+||
T Consensus        12 ~~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~--~pnrymVLikF~~~~~Ad~Fy~~fNGk~FnslEpE~Chv   89 (110)
T PF07576_consen   12 RSTLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDG--TPNRYMVLIKFRDQESADEFYEEFNGKPFNSLEPETCHV   89 (110)
T ss_pred             CceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCC--CCceEEEEEEECCHHHHHHHHHHhCCCccCCCCCceeEE
Confidence            344444 44555455577877777776654 67888763  3577789999999999999999999999975   34665


Q ss_pred             Eec
Q 026963           95 SYA   97 (230)
Q Consensus        95 syA   97 (230)
                      -|-
T Consensus        90 vfV   92 (110)
T PF07576_consen   90 VFV   92 (110)
T ss_pred             EEE
Confidence            554

These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.

>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]

Probab=90.06  E-value=0.44  Score=48.05  Aligned_cols=65  Identities=23%  Similarity=0.356  Sum_probs=51.3

Q ss_pred             eEEEcCCCCCCCHHHHHHhhcc--CCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcC--ceeCCceeE
Q 026963           22 YLIVRNVPSLGCGDDLLKLFAT--YGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDE--FVFLGNRLK   93 (230)
Q Consensus        22 ~LyV~NLP~~~teedL~~LFS~--fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG--~~f~Gr~L~   93 (230)
                      .+++|-+|..+..|+++.||.-  +-++++|...-+       .--||+|++..||+.|.+.|..  +.|.|++|.
T Consensus       177 IvilREIpettp~e~Vk~lf~~encPk~iscefa~N-------~nWyITfesd~DAQqAykylreevk~fqgKpIm  245 (684)
T KOG2591|consen  177 IVILREIPETTPIEVVKALFKGENCPKVISCEFAHN-------DNWYITFESDTDAQQAYKYLREEVKTFQGKPIM  245 (684)
T ss_pred             EEEEeecCCCChHHHHHHHhccCCCCCceeeeeeec-------CceEEEeecchhHHHHHHHHHHHHHhhcCcchh
Confidence            3566999998888999999986  678888876554       2369999999999999988865  347777643

>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]

Probab=88.31  E-value=0.32  Score=48.08  Aligned_cols=72  Identities=19%  Similarity=0.130  Sum_probs=57.3

Q ss_pred             CCeEEEcCCCCCC-CHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEecC
Q 026963           20 SRYLIVRNVPSLG-CGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYAS   98 (230)
Q Consensus        20 S~~LyV~NLP~~~-teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA~   98 (230)
                      .+.|-+.-.|... +-.+|...|.+||+|..|.+-..      -.-|.|+|....+|-.| .+..|..|.|+.|+|-|..
T Consensus       372 hs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~------~~~a~vTF~t~aeag~a-~~s~~avlnnr~iKl~whn  444 (526)
T KOG2135|consen  372 HSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS------SLHAVVTFKTRAEAGEA-YASHGAVLNNRFIKLFWHN  444 (526)
T ss_pred             cchhhhhccCCCCchHhhhhhhhhhcCccccccccCc------hhhheeeeeccccccch-hccccceecCceeEEEEec
Confidence            4456666666643 55899999999999999987554      24699999999999666 4678999999999999974

>KOG2318 consensus Uncharacterized conserved protein [Function unknown]

Probab=88.24  E-value=2.1  Score=43.42  Aligned_cols=83  Identities=22%  Similarity=0.281  Sum_probs=64.2

Q ss_pred             cCCCCeEEEcCCCCCCC-HHHHHHhhccC----CcceEEEeecCC----------CCCC---------------------
Q 026963           17 CDESRYLIVRNVPSLGC-GDDLLKLFATY----GDIEECKPMDAE----------DCDP---------------------   60 (230)
Q Consensus        17 ~~eS~~LyV~NLP~~~t-eedL~~LFS~f----G~I~~v~il~d~----------~tgk---------------------   60 (230)
                      ..++++|-|-|+.|... -.||..+|+.|    |.|.+|.|....          -+|.                     
T Consensus       171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~  250 (650)
T KOG2318|consen  171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE  250 (650)
T ss_pred             ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence            45788999999999654 48999998877    589999886542          1121                     


Q ss_pred             ----------------ceeEEEEEEccHhHHHHHHHHhcCceeCC--ceeEEEecCC
Q 026963           61 ----------------FTDVYFIKFRLFSNARFAKRKLDEFVFLG--NRLKVSYASQ   99 (230)
Q Consensus        61 ----------------srG~AFV~F~d~edA~~A~~~LnG~~f~G--r~L~VsyA~e   99 (230)
                                      ---||.|.|.+++.|..--..+||.+|..  ..|-+-|-|+
T Consensus       251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFIPD  307 (650)
T KOG2318|consen  251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFIPD  307 (650)
T ss_pred             hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeecCC
Confidence                            12378999999999999999999999985  4555667775

>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]

Probab=84.64  E-value=0.55  Score=43.22  Aligned_cols=79  Identities=14%  Similarity=-0.021  Sum_probs=69.3

Q ss_pred             CCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963           19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA   97 (230)
Q Consensus        19 eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA   97 (230)
                      ...++|++++.+...+.+...+|..+|.+..+..........++|++.+.|...+.+..|+...-.+...++.+.....
T Consensus        87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~  165 (285)
T KOG4210|consen   87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLN  165 (285)
T ss_pred             ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCccc
Confidence            4678999999998888889999999999999888887788999999999999999999999887777888887776665

>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]

Probab=84.52  E-value=1.4  Score=35.78  Aligned_cols=80  Identities=20%  Similarity=0.242  Sum_probs=61.3

Q ss_pred             CCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963           18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA   97 (230)
Q Consensus        18 ~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA   97 (230)
                      ..+..+++.|++......++..+|..+|.+....+...........+.++.+.....+..+..........+......++
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (306)
T COG0724         223 EKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKSRSFVGNEASKDALESNSRGNKKKILGRGPRKAFS  302 (306)
T ss_pred             cccceeeccccccccchhHHHHhccccccceeeeccCCCCCcccccccccchhHHHhhhhhhccccceeecccCcchhhc
Confidence            45678999999999999999999999999988887777665556667777777777777777776666666555544433

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]

Probab=83.05  E-value=3.7  Score=40.60  Aligned_cols=76  Identities=22%  Similarity=0.283  Sum_probs=62.8

Q ss_pred             CCeEEEcCCCCCCCHHHHHHhhccCCc-ceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCC---ceeEEE
Q 026963           20 SRYLIVRNVPSLGCGDDLLKLFATYGD-IEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLG---NRLKVS   95 (230)
Q Consensus        20 S~~LyV~NLP~~~teedL~~LFS~fG~-I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~G---r~L~Vs   95 (230)
                      ++.|.|-.+|..++-.||..+...|=+ |.++++++|.  -.++=...|.|.+.++|..-...+||+.|..   ..+||-
T Consensus        74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~--~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~le~e~Chll  151 (493)
T KOG0804|consen   74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDG--MPNRYMVLIKFRDQADADTFYEEFNGKQFNSLEPEVCHLL  151 (493)
T ss_pred             CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecC--CCceEEEEEEeccchhHHHHHHHcCCCcCCCCCccceeEE
Confidence            678999999999999998888777654 6789999864  4566789999999999999999999999975   345555


Q ss_pred             ec
Q 026963           96 YA   97 (230)
Q Consensus        96 yA   97 (230)
                      |.
T Consensus       152 ~V  153 (493)
T KOG0804|consen  152 YV  153 (493)
T ss_pred             EE
Confidence            55

>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]

Probab=82.33  E-value=0.99  Score=46.11  Aligned_cols=78  Identities=19%  Similarity=0.130  Sum_probs=66.6

Q ss_pred             CcceeeeccCCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeC
Q 026963            9 PGVRVYTVCDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFL   88 (230)
Q Consensus         9 ~avkvytv~~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~   88 (230)
                      ++.-|++...+..++||+|+...+..+=+..+...+|-|.+++.+.         |||+.|..+.-+..|+..+.-..+.
T Consensus        29 p~qp~~~~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~   99 (668)
T KOG2253|consen   29 PIQPVFQPLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNID   99 (668)
T ss_pred             CCcccccCCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCC
Confidence            3444566677888999999998777777899999999999998764         8999999999999999999999998


Q ss_pred             CceeEEE
Q 026963           89 GNRLKVS   95 (230)
Q Consensus        89 Gr~L~Vs   95 (230)
                      |..|.+.
T Consensus       100 ~~kl~~~  106 (668)
T KOG2253|consen  100 DQKLIEN  106 (668)
T ss_pred             cchhhcc
Confidence            8876654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	230
2e44_A	96	Insulin-like growth factor 2 mRNA binding protein	5e-12
3lqv_A	115	PRE-mRNA branch site protein P14; cysless mutant,	4e-08
1wg1_A	88	KIAA1579 protein, homolog EXC-7; RBD, structural g	4e-07
3s8s_A	110	Histone-lysine N-methyltransferase SETD1A; chromat	8e-07
2cpj_A	99	Non-POU domain-containing octamer-binding protein;	1e-05
2a3j_A	127	U1 small nuclear ribonucleoprotein A; computationa	1e-05
1nu4_A	97	U1A RNA binding domain; RNA recognition motif, U1	2e-05
2la4_A	101	Nuclear and cytoplasmic polyadenylated RNA-bindin	2e-05
2jvo_A	108	Nucleolar protein 3; nucleus, phosphorylation, rib	3e-05
3pgw_A	282	U1-A; protein-RNA complex, U1 snRNA, SM fold, SM c	3e-05
3pgw_A	282	U1-A; protein-RNA complex, U1 snRNA, SM fold, SM c	5e-05
2ytc_A	85	PRE-mRNA-splicing factor RBM22; RRM domain, RBD, s	4e-05
3nmr_A	175	Cugbp ELAV-like family member 1; RRM, PRE-mRNA spl	5e-05
2kvi_A	96	Nuclear polyadenylated RNA-binding protein 3; RNA-	5e-05
2dis_A	109	Unnamed protein product; structural genomics, RRM	5e-05
3smz_A	284	Protein raver-1, ribonucleoprotein PTB-binding 1;	7e-05
1x4g_A	109	Nucleolysin TIAR; structural genomics, RRM domain,	7e-05
3egn_A	143	RNA-binding protein 40; RNA recognition motif (RRM	9e-05
1whw_A	99	Hypothetical protein riken cDNA 1200009A02; RNA re	1e-04
1whx_A	111	Hypothetical protein riken cDNA 1200009A02; RNA re	1e-04
1qm9_A	198	Polypyrimidine tract-binding protein; ribonucleopr	1e-04
2dgt_A	92	RNA-binding protein 30; RRM domain, structural gen	2e-04
1rk8_A	165	CG8781-PA, CG8781-PA protein; mRNA processing, RRM	2e-04
2dgu_A	103	Heterogeneous nuclear ribonucleoprotein Q; RRM dom	2e-04
1sjq_A	105	Polypyrimidine tract-binding protein 1; babbab mot	2e-04
2cph_A	107	RNA binding motif protein 19; RNA recognition moti	2e-04
1x4a_A	109	Splicing factor, arginine/serine-rich 1 (splicing	3e-04
1oo0_B	110	CG8781-PA, drosophila Y14; RNA recognition motif,	3e-04
2ad9_A	119	Polypyrimidine tract-binding protein 1; RBD, RRM,	3e-04
1x4e_A	85	RNA binding motif, single-stranded interacting pro	3e-04
2adc_A	229	Polypyrimidine tract-binding protein 1; RBD, RRM,	3e-04
2ghp_A	292	U4/U6 snRNA-associated splicing factor PRP24; RNA	3e-04
2do4_A	100	Squamous cell carcinoma antigen recognized by T- c	3e-04
3tyt_A	205	Heterogeneous nuclear ribonucleoprotein L; ferredo	4e-04
2cpz_A	115	CUG triplet repeat RNA-binding protein 1; RRM doma	4e-04
2xnq_A	97	Nuclear polyadenylated RNA-binding protein 3; tran	4e-04
3sde_A	261	Paraspeckle component 1; RRM, anti parallel right	4e-04
1b7f_A	168	Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP	4e-04
2dnm_A	103	SRP46 splicing factor; RRM domain, RBD, structural	5e-04
2cpd_A	99	Apobec-1 stimulating protein; RNA recognition moti	6e-04
3ns6_A	100	Eukaryotic translation initiation factor 3 subuni;	6e-04
2cpx_A	115	Hypothetical protein FLJ11016; RRM domain, structu	6e-04
2bz2_A	121	Negative elongation factor E; NELF E, RNA recognit	7e-04
2cq1_A	101	PTB-like protein L; RRM domain, structural genomic	8e-04
2khc_A	118	Testis-specific RNP-type RNA binding protein; RRM,	8e-04
2cqi_A	103	Nucleolysin TIAR; RNA recognition motif, RRM, RNA	8e-04
1x5p_A	97	Negative elongation factor E; structure genomics,	9e-04
1p27_B	106	RNA-binding protein 8A; nuclear protein, mRNA spli	9e-04

>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96

 Score = 59.4 bits (144), Expect = 5e-12
 Identities = 24/85 (28%), Positives = 36/85 (42%), Gaps = 3/85 (3%)

Query: 18  DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARF 77
              R L +RN+P     + L  L   YG +E C+ +   + D  T V  + +     AR 
Sbjct: 13  QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQV---NTDSETAVVNVTYSSKDQARQ 69

Query: 78  AKRKLDEFVFLGNRLKVSYASQFES 102
           A  KL+ F      LKV+Y     +
Sbjct: 70  ALDKLNGFQLENFTLKVAYIPDEMA 94

>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} PDB: 2f9d_A 2f9j_A 2fho_B Length = 115

 Score = 49.3 bits (118), Expect = 4e-08
 Identities = 18/103 (17%), Positives = 41/103 (39%), Gaps = 3/103 (2%)

Query: 18  DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARF 77
           + +R L +RN+P     +++  +F  YG I + +  +  +        ++ +    +A+ 
Sbjct: 6   EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTA---YVVYEDIFDAKN 62

Query: 78  AKRKLDEFVFLGNRLKVSYASQFESLADTKDKLETRRKEVLAR 120
           A   L  F      L V Y +   +      K +  + ++L  
Sbjct: 63  AVDHLSGFNVSNRYLVVLYYNANRAFQKMDTKKKEEQLKLLKE 105

>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A Length = 88

 Score = 45.9 bits (109), Expect = 4e-07
 Identities = 15/78 (19%), Positives = 28/78 (35%), Gaps = 7/78 (8%)

Query: 20 SRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAK 79
          S  ++V+N+P      ++  L   Y  ++ C        D      F+       A+ A 
Sbjct: 5  SSGILVKNLPQDSNCQEVHDLLKDYD-LKYC------YVDRNKRTAFVTLLNGEQAQNAI 57

Query: 80 RKLDEFVFLGNRLKVSYA 97
          +   ++ F G  L V   
Sbjct: 58 QMFHQYSFRGKDLIVQLQ 75

>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens} Length = 110

 Score = 45.5 bits (108), Expect = 8e-07
 Identities = 14/95 (14%), Positives = 27/95 (28%), Gaps = 18/95 (18%)

Query: 7  EPPGVRVYTVCDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVY- 65
          + P   V              +        L  +   YG++EE + +      P T  + 
Sbjct: 3  QIPLKEVT----------FARLNDNVRETFLKDMCRKYGEVEEVEIL----LHPRTRKHL 48

Query: 66 ---FIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97
              + F     A+   + L     +GN +     
Sbjct: 49 GLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83

>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1 Length = 99

 Score = 41.9 bits (99), Expect = 1e-05
 Identities = 18/67 (26%), Positives = 27/67 (40%), Gaps = 14/67 (20%)

Query: 35 DDLLKLFATYGDIEECK-PMD---AEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGN 90
          +++ KLF  YG   E     D              FI+    + A  AK +LD     G 
Sbjct: 30 EEMRKLFEKYGKAGEVFIHKDKGFG----------FIRLETRTLAEIAKVELDNMPLRGK 79

Query: 91 RLKVSYA 97
          +L+V +A
Sbjct: 80 QLRVRFA 86

>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens} Length = 127

 Score = 42.2 bits (99), Expect = 1e-05
 Identities = 16/101 (15%), Positives = 37/101 (36%), Gaps = 8/101 (7%)

Query: 20  SRYLIVRNVPSLGCGDDLLK----LFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNA 75
           S+ +++ N+      + L      L ++ GDI +     ++D        +I F    +A
Sbjct: 29  SQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKA---YIVFATQESA 85

Query: 76  RFAKRKLDEFVFLGNRLKVSYASQFESLADTKDKLETRRKE 116
           +        + F GN L ++++ +       +D        
Sbjct: 86  QAFVEAFQGYPFQGNPLVITFS-ETPQSQVAEDGSLEHHHH 125

>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ... Length = 97

 Score = 41.1 bits (97), Expect = 2e-05
 Identities = 19/97 (19%), Positives = 40/97 (41%), Gaps = 12/97 (12%)

Query: 20  SRYLIVRNVPSLGCGDDLLK-----LFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSN 74
           +  + + N+       D LK     +F+ +G I +     +          F+ F+  S+
Sbjct: 8   NHTIYINNLNE-KIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQA---FVIFKEVSS 63

Query: 75  ARFAKRKLDEFVFLGNRLKVSYASQFESLADTKDKLE 111
           A  A R +  F F    +++ YA   ++ +D   K++
Sbjct: 64  ATNALRSMQGFPFYDKPMRIQYA---KTDSDIIAKMK 97

>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae} Length = 101

 Score = 41.1 bits (97), Expect = 2e-05
 Identities = 17/63 (26%), Positives = 24/63 (38%), Gaps = 6/63 (9%)

Query: 35 DDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKV 94
           DL+ LF  +G I + K    + C       FIK+     A      L  F F G  L+ 
Sbjct: 42 ADLIPLFQNFGFILDFKHYPEKGCC------FIKYDTHEQAAVCIVALANFPFQGRNLRT 95

Query: 95 SYA 97
           + 
Sbjct: 96 GWG 98

>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A Length = 108

 Score = 41.1 bits (97), Expect = 3e-05
 Identities = 19/95 (20%), Positives = 36/95 (37%), Gaps = 18/95 (18%)

Query: 3   RYKDEPPGVRVYTVCDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFT 62
           R + E    R++          VR  P      +L ++F  +G ++E K +         
Sbjct: 24  RQEGELSNTRLF----------VRPFPLDVQESELNEIFGPFGPMKEVKIL--------N 65

Query: 63  DVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97
              F++F    +A  A  ++    F    L+V Y+
Sbjct: 66  GFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYS 100

>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A Length = 282

 Score = 43.3 bits (101), Expect = 3e-05
 Identities = 19/100 (19%), Positives = 37/100 (37%), Gaps = 6/100 (6%)

Query: 1   MPRYKDEPPGVRVYTVCDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDP 60
                 + P  +  +    +  L + N+P       L  LF  +   +E + +       
Sbjct: 188 QQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR---- 243

Query: 61  FTDVYFIKFRLFSNARFAKRKLDEFVFL-GNRLKVSYASQ 99
             D+ F++F     A  A+  L  F     N +K+S+A +
Sbjct: 244 -HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 282

>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A Length = 282

 Score = 42.2 bits (98), Expect = 5e-05
 Identities = 14/61 (22%), Positives = 26/61 (42%), Gaps = 3/61 (4%)

Query: 37 LLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSY 96
          L  +F+ +G I +     +          F+ F+  S+A  A R +  F F    +++ Y
Sbjct: 30 LYAIFSQFGQILDILVSRSLKMRGQA---FVIFKEVSSATNALRSMQGFPFYDKPMRIQY 86

Query: 97 A 97
          A
Sbjct: 87 A 87

>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 85

 Score = 39.9 bits (94), Expect = 4e-05
 Identities = 18/76 (23%), Positives = 28/76 (36%), Gaps = 7/76 (9%)

Query: 23 LIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRK- 81
          L V  +       DL   F  +G+I     +  + C       FI+F     A  A  K 
Sbjct: 15 LYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQQCA------FIQFATRQAAEVAAEKS 68

Query: 82 LDEFVFLGNRLKVSYA 97
           ++ +  G RL V + 
Sbjct: 69 FNKLIVNGRRLNVKWG 84

>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A Length = 175

 Score = 41.4 bits (98), Expect = 5e-05
 Identities = 19/102 (18%), Positives = 34/102 (33%), Gaps = 12/102 (11%)

Query: 19  ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVY------FIKFRLF 72
           ++  + V  VP      DL +LF  YG + E   +     D   +        F+ F   
Sbjct: 2   DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVL----RDRSQNPPQSKGCCFVTFYTR 57

Query: 73  SNARFAKRKLDEFVFLGNRLKVSYASQFESLADTKDKLETRR 114
             A  A+  L     L             + ++  + +E R+
Sbjct: 58  KAALEAQNALHNMKVLPGMHHPIQMKP--ADSEKNNAVEDRK 97

>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae} Length = 96

 Score = 39.9 bits (94), Expect = 5e-05
 Identities = 21/100 (21%), Positives = 40/100 (40%), Gaps = 21/100 (21%)

Query: 1  MPRYKDEPPGVRVYTVCDESRYLIVRNVPSLGCG-DDLLKLFATYGDIEECKPMDAEDCD 59
          M    + PP  R++          + N+P      +DL ++F+ YG I +    +A    
Sbjct: 1  MTEMHNIPPKSRLF----------IGNLPLKNVSKEDLFRIFSPYGHIMQINIKNA---- 46

Query: 60 PFTDVY-FIKFRLFSNARFAKRKLDEFVFLGNRLKVSYAS 98
               + FI+F    + R A     + +  G +L +  +S
Sbjct: 47 -----FGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSS 81

>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 109

 Score = 40.2 bits (94), Expect = 5e-05
 Identities = 15/79 (18%), Positives = 33/79 (41%), Gaps = 4/79 (5%)

Query: 23 LIVRNVPSLGCGDDLLKLFATYGD-IEECK-PMDAEDCDPFTDVYFIKFRLFSNARFAKR 80
          L +  +P +   +++L+  A   + + +      A D        F+++     A  A+R
Sbjct: 11 LFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARR 70

Query: 81 KL--DEFVFLGNRLKVSYA 97
          KL        G+++ V +A
Sbjct: 71 KLMPGRIQLWGHQIAVDWA 89

>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3h2u_B 3h2v_E Length = 284

 Score = 41.9 bits (99), Expect = 7e-05
 Identities = 16/80 (20%), Positives = 30/80 (37%), Gaps = 2/80 (2%)

Query: 19  ESRYLIVRNVP-SLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARF 77
            SR L V  +P      D L +  +       C+    +D         +++     A  
Sbjct: 183 HSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQL-KGFAVLEYETAEMAEE 241

Query: 78  AKRKLDEFVFLGNRLKVSYA 97
           A+++ D     G+ L+VS+ 
Sbjct: 242 AQQQADGLSLGGSHLRVSFC 261

>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 109

 Score = 40.0 bits (94), Expect = 7e-05
 Identities = 10/64 (15%), Positives = 24/64 (37%), Gaps = 8/64 (12%)

Query: 35 DDLLKLFATYGDIEECK-PMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLK 93
            + + F+ +G I E +   +           F++F    +A  A   ++     G+ +K
Sbjct: 40 QLMRQTFSPFGQIMEIRVFPEKGYS-------FVRFSTHESAAHAIVSVNGTTIEGHVVK 92

Query: 94 VSYA 97
            + 
Sbjct: 93 CYWG 96

>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens} Length = 143

 Score = 40.2 bits (94), Expect = 9e-05
 Identities = 19/86 (22%), Positives = 29/86 (33%), Gaps = 8/86 (9%)

Query: 35  DDLLKLFATYGDIEECKPMDAEDCDPFTDVY-----FIKFRLFSNARFAKRKLDEFVFLG 89
            DL  +F  Y D          D     +       FI       A  A ++ + +V  G
Sbjct: 60  KDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFG 119

Query: 90  NRLKVSYASQFESLADTKDKLETRRK 115
             + V +A    S    +D  E +RK
Sbjct: 120 KPMVVQFA---RSARPKQDPKEGKRK 142

>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 Length = 99

 Score = 39.1 bits (92), Expect = 1e-04
 Identities = 27/83 (32%), Positives = 38/83 (45%), Gaps = 6/83 (7%)

Query: 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECK-PMDAEDCDP--FTDVYFIKFRLFSN 74
            S  L VRN+      +DL KLF+ YG + E   P+D+    P  F    F+ F    +
Sbjct: 6  SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFA---FVTFMFPEH 62

Query: 75 ARFAKRKLDEFVFLGNRLKVSYA 97
          A  A  ++D  VF G  L V  +
Sbjct: 63 AVKAYAEVDGQVFQGRMLHVLPS 85

>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 Length = 111

 Score = 39.4 bits (92), Expect = 1e-04
 Identities = 17/96 (17%), Positives = 34/96 (35%), Gaps = 8/96 (8%)

Query: 23  LIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKL 82
           ++ +N+P+     ++ + F+ +G +                   ++F     AR A R L
Sbjct: 13  ILAKNLPAGTLAAEIQETFSRFGSLGRVL------LPEGGITAIVEFLEPLEARKAFRHL 66

Query: 83  DEFVFLGNRLKVSYASQ--FESLADTKDKLETRRKE 116
               F    L + +A    F +    KD    +  E
Sbjct: 67  AYSKFHHVPLYLEWAPIGVFGAAPQKKDSQHEQPAE 102

>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 Length = 198

 Score = 41.0 bits (96), Expect = 1e-04
 Identities = 19/120 (15%), Positives = 42/120 (35%), Gaps = 6/120 (5%)

Query: 23  LIVRNVPSLGCGDDLLK-LFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRK 81
           L+V N+         L  LF  YGD++  K +  +          ++    + A+ A   
Sbjct: 6   LLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKE-----NALVQMADGNQAQLAMSH 60

Query: 82  LDEFVFLGNRLKVSYASQFESLADTKDKLETRRKEVLARLNSGRSKVPNIHSSVDLGEPS 141
           L+     G  ++++ +         + + +    +        R K P   +  ++  PS
Sbjct: 61  LNGHKLHGKPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPS 120

>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 92

 Score = 38.4 bits (90), Expect = 2e-04
 Identities = 19/73 (26%), Positives = 27/73 (36%), Gaps = 8/73 (10%)

Query: 25 VRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDE 84
          V N+       +L   F  YG + EC  +         D  F+      +A  A R LD 
Sbjct: 15 VGNISPTCTNQELRAKFEEYGPVIECDIV--------KDYAFVHMERAEDAVEAIRGLDN 66

Query: 85 FVFLGNRLKVSYA 97
            F G R+ V  +
Sbjct: 67 TEFQGKRMHVQLS 79

>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A Length = 165

 Score = 39.8 bits (93), Expect = 2e-04
 Identities = 17/99 (17%), Positives = 36/99 (36%), Gaps = 6/99 (6%)

Query: 2   PRYKDEPPGVRVYTVCDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECK-PMDAEDCDP 60
            R +D+           E   L V ++      D++ + F  YG+I+     +D      
Sbjct: 54  VRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFS 113

Query: 61  --FTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97
             +     +++     A  AK  L+    +G  ++V + 
Sbjct: 114 KGYA---LVEYETHKQALAAKEALNGAEIMGQTIQVDWC 149

>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A Length = 103

 Score = 38.4 bits (90), Expect = 2e-04
 Identities = 18/75 (24%), Positives = 32/75 (42%), Gaps = 8/75 (10%)

Query: 23 LIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKL 82
          L VRN+ +    + L K F+ +G +E  K +         D  FI F     A  A  ++
Sbjct: 14 LFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEM 65

Query: 83 DEFVFLGNRLKVSYA 97
          +     G  +++ +A
Sbjct: 66 NGKDLEGENIEIVFA 80

>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 105

 Score = 38.3 bits (89), Expect = 2e-04
 Identities = 12/84 (14%), Positives = 27/84 (32%), Gaps = 8/84 (9%)

Query: 20  SRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAK 79
           SR + +R +P      +++ L   +G +               +  FI+      A    
Sbjct: 16  SRVIHIRKLPIDVTEGEVISLGLPFGKVTNLL------MLKGKNQAFIEMNTEEAANTMV 69

Query: 80  RKLDE--FVFLGNRLKVSYASQFE 101
                   V  G  + + +++  E
Sbjct: 70  NYYTSVTPVLRGQPIYIQFSNHKE 93

>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1 Length = 107

 Score = 38.4 bits (90), Expect = 2e-04
 Identities = 19/85 (22%), Positives = 37/85 (43%), Gaps = 8/85 (9%)

Query: 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECK-PMDAEDCDP---FTDVYFIKFRLFS 73
            +  ++VRN+P      ++ +LF+T+G+++  + P           F    F+ F    
Sbjct: 13 QTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFG---FVDFITKQ 69

Query: 74 NARFAKRKL-DEFVFLGNRLKVSYA 97
          +A+ A   L       G RL + +A
Sbjct: 70 DAKKAFNALCHSTHLYGRRLVLEWA 94

>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 109

 Score = 38.5 bits (90), Expect = 3e-04
 Identities = 22/95 (23%), Positives = 35/95 (36%), Gaps = 13/95 (13%)

Query: 3  RYKDEPPGVRVYTVCDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFT 62
          R        R+Y          V N+P      D+  +F  YG I +    +     PF 
Sbjct: 15 RGPAGNNDCRIY----------VGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFA 64

Query: 63 DVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97
             F++F    +A  A    D + + G RL+V + 
Sbjct: 65 ---FVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFP 96

>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D* Length = 110

 Score = 38.4 bits (90), Expect = 3e-04
 Identities = 15/84 (17%), Positives = 32/84 (38%), Gaps = 6/84 (7%)

Query: 17  CDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECK-PMDAEDCDP--FTDVYFIKFRLFS 73
             E   L V ++      D++ + F  YG+I+     +D        +     +++    
Sbjct: 23  SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYA---LVEYETHK 79

Query: 74  NARFAKRKLDEFVFLGNRLKVSYA 97
            A  AK  L+    +G  ++V + 
Sbjct: 80  QALAAKEALNGAEIMGQTIQVDWC 103

>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 119

 Score = 38.4 bits (89), Expect = 3e-04
 Identities = 12/84 (14%), Positives = 28/84 (33%), Gaps = 8/84 (9%)

Query: 20  SRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAK 79
           SR + +R +P      +++ L   +G +     +         +  FI+      A    
Sbjct: 31  SRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLML------KGKNQAFIEMNTEEAANTMV 84

Query: 80  R--KLDEFVFLGNRLKVSYASQFE 101
                   V  G  + + +++  E
Sbjct: 85  NYYTSVTPVLRGQPIYIQFSNHKE 108

>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 85

 Score = 37.5 bits (88), Expect = 3e-04
 Identities = 22/85 (25%), Positives = 29/85 (34%), Gaps = 8/85 (9%)

Query: 19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVY----FIKFRLFSN 74
           S  L +R +       DL+KL   YG I   K +     D  T+      F+ F   S 
Sbjct: 4  GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAI----LDKTTNKCKGYGFVDFDSPSA 59

Query: 75 ARFAKRKLDEFVFLGNRLKVSYASQ 99
          A+ A   L          K S  S 
Sbjct: 60 AQKAVTALKASGVQAQMAKQSGPSS 84

>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A Length = 229

 Score = 39.6 bits (92), Expect = 3e-04
 Identities = 20/120 (16%), Positives = 44/120 (36%), Gaps = 6/120 (5%)

Query: 23  LIVRNV-PSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRK 81
           L+V N+ P       L  LF  YGD++  K +  +      +   ++    + A+ A   
Sbjct: 37  LLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSH 91

Query: 82  LDEFVFLGNRLKVSYASQFESLADTKDKLETRRKEVLARLNSGRSKVPNIHSSVDLGEPS 141
           L+     G  ++++ +         + + +    +        R K P   +  ++  PS
Sbjct: 92  LNGHKLHGKPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPS 151

>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A Length = 292

 Score = 40.0 bits (94), Expect = 3e-04
 Identities = 18/81 (22%), Positives = 37/81 (45%), Gaps = 3/81 (3%)

Query: 19  ESRYLIVRNVPSLGCGDDLLK-LFATYGDIEECK-PMDAEDCDPFTDVYFIKFRLFSNAR 76
           E R +++RN+ +    ++LL+  F  +G IE+   P   ++        F+ F    +A 
Sbjct: 209 EGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAE 268

Query: 77  FAKRKLDEFVFLGNRLKVSYA 97
            A  +++  +     + VS A
Sbjct: 269 RAL-QMNRSLLGNREISVSLA 288

>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 37.6 bits (88), Expect = 3e-04
 Identities = 17/101 (16%), Positives = 38/101 (37%), Gaps = 19/101 (18%)

Query: 6  DEPPGVRVYTVCDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECK-PMD--------AE 56
              GV  Y+   E   L +  +P     ++L ++   +G +++ +   +        A 
Sbjct: 3  SGSSGVFRYSTSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLA- 61

Query: 57 DCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97
                   ++++   S A  A  K+D      N +KV+ +
Sbjct: 62 ---------YVEYENESQASQAVMKMDGMTIKENIIKVAIS 93

>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A Length = 205

 Score = 39.3 bits (91), Expect = 4e-04
 Identities = 16/82 (19%), Positives = 32/82 (39%), Gaps = 6/82 (7%)

Query: 19 ESRYLIVRNV-PSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARF 77
          +S  L+V  +  S    D +  +F  YG++E+ K M ++          ++         
Sbjct: 3  DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSK-----PGAAMVEMADGYAVDR 57

Query: 78 AKRKLDEFVFLGNRLKVSYASQ 99
          A   L+     G ++ V  + Q
Sbjct: 58 AITHLNNNFMFGQKMNVCVSKQ 79

>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A Length = 115

 Score = 38.1 bits (89), Expect = 4e-04
 Identities = 18/79 (22%), Positives = 35/79 (44%), Gaps = 8/79 (10%)

Query: 23  LIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVY----FIKFRLFSNARFA 78
           L + ++P      DLL++F  +G++   K       D  T++     F+ +    +A+ A
Sbjct: 28  LFIYHLPQEFGDQDLLQMFMPFGNVVSAKVF----IDKQTNLSKCFGFVSYDNPVSAQAA 83

Query: 79  KRKLDEFVFLGNRLKVSYA 97
            + ++ F     RLKV   
Sbjct: 84  IQSMNGFQIGMKRLKVQLK 102

>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A Length = 97

 Score = 37.3 bits (87), Expect = 4e-04
 Identities = 18/96 (18%), Positives = 37/96 (38%), Gaps = 21/96 (21%)

Query: 5  KDEPPGVRVYTVCDESRYLIVRNVPSLGCG-DDLLKLFATYGDIEECKPMDAEDCDPFTD 63
          +      R++          + N+P      +DL ++F+ YG I +    +A        
Sbjct: 17 RGSHMKSRLF----------IGNLPLKNVSKEDLFRIFSPYGHIMQINIKNA-------- 58

Query: 64 VY-FIKFRLFSNARFAKRKLDEFVFLGNRLKVSYAS 98
           + FI+F    + R A     + +  G +L +  +S
Sbjct: 59 -FGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSS 93

>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B Length = 261

 Score = 39.3 bits (92), Expect = 4e-04
 Identities = 16/67 (23%), Positives = 28/67 (41%), Gaps = 10/67 (14%)

Query: 35 DDLLKLFATYGDIEECKPMDAEDCDPFTDV-Y-FIKFRLFSNARFAKRKLDEFVFLGNRL 92
          +D  +LF  YG+  E             D  + FI+    + A  AK +LD  +     L
Sbjct: 37 EDFKRLFERYGEPSEVFIN--------RDRGFGFIRLESRTLAEIAKAELDGTILKSRPL 88

Query: 93 KVSYASQ 99
          ++ +A+ 
Sbjct: 89 RIRFATH 95

>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A Length = 168

 Score = 38.7 bits (91), Expect = 4e-04
 Identities = 25/81 (30%), Positives = 34/81 (41%), Gaps = 8/81 (9%)

Query: 23 LIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDV---Y-FIKFRLFSNARFA 78
          LIV  +P      +L  LF   G I  C+ M     D  T     Y F+ F    +++ A
Sbjct: 6  LIVNYLPQDMTDRELYALFRAIGPINTCRIM----RDYKTGYSYGYAFVDFTSEMDSQRA 61

Query: 79 KRKLDEFVFLGNRLKVSYASQ 99
           + L+       RLKVSYA  
Sbjct: 62 IKVLNGITVRNKRLKVSYARP 82

>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 37.6 bits (88), Expect = 5e-04
 Identities = 21/83 (25%), Positives = 34/83 (40%), Gaps = 6/83 (7%)

Query: 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECK-PMDAEDCDP--FTDVYFIKFRLFSN 74
          D    L V N+      D L ++F  YG + +   P +     P  F    F++F    +
Sbjct: 11 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFA---FVRFHDRRD 67

Query: 75 ARFAKRKLDEFVFLGNRLKVSYA 97
          A+ A+  +D     G  L+V  A
Sbjct: 68 AQDAEAAMDGAELDGRELRVQVA 90

>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 99

 Score = 37.3 bits (87), Expect = 6e-04
 Identities = 16/80 (20%), Positives = 29/80 (36%), Gaps = 6/80 (7%)

Query: 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARF 77
             + L VRN+      + + K F         +     D        F+ F    +A  
Sbjct: 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRDYA------FVHFSNREDAVE 66

Query: 78 AKRKLDEFVFLGNRLKVSYA 97
          A + L+  V  G+ ++V+ A
Sbjct: 67 AMKALNGKVLDGSPIEVTLA 86

>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A Length = 100

 Score = 37.0 bits (86), Expect = 6e-04
 Identities = 14/93 (15%), Positives = 29/93 (31%), Gaps = 9/93 (9%)

Query: 21  RYLIVRNVPSLGCG------DDLLKLFATYGDIEECK-PMDAEDCDPFTDVYFIKFRLFS 73
           +Y++V   P +           L  LF+  G +   + P+D           F++    +
Sbjct: 7   QYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKG-FLFVECGSMN 65

Query: 74  NARFAKRKLDEFVFLGN-RLKVSYASQFESLAD 105
           +A+   +           RL +      E    
Sbjct: 66  DAKKIIKSFHGKRLDLKHRLFLYTMKDVERYNS 98

>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 115

 Score = 37.3 bits (87), Expect = 6e-04
 Identities = 18/101 (17%), Positives = 35/101 (34%), Gaps = 15/101 (14%)

Query: 1   MPRYKDEPPGVRVYTVCDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDP 60
           +P +    PG       + ++ L ++N+       DL+ LFA + + +            
Sbjct: 13  IPMFSSYNPG-------EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQ----FRM 61

Query: 61  FTDVY----FIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97
            T       FI F     A  A   ++ +   G  L + + 
Sbjct: 62  MTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFG 102

>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 101

 Score = 36.7 bits (85), Expect = 8e-04
 Identities = 11/84 (13%), Positives = 26/84 (30%), Gaps = 8/84 (9%)

Query: 20  SRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAK 79
           SR L +R +P      +++ L   +G +     +         +  F++      A    
Sbjct: 15  SRVLHIRKLPGEVTETEVIALGLPFGKVTNILML------KGKNQAFLELATEEAAITMV 68

Query: 80  R--KLDEFVFLGNRLKVSYASQFE 101
                         + + Y++  E
Sbjct: 69  NYYSAVTPHLRNQPIYIQYSNHKE 92

>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster} Length = 118

 Score = 37.3 bits (87), Expect = 8e-04
 Identities = 18/79 (22%), Positives = 32/79 (40%), Gaps = 8/79 (10%)

Query: 23  LIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDV---Y-FIKFRLFSNARFA 78
           L + ++P      DL   F  +G++   K       D  T +   + F+ F    +A+ A
Sbjct: 43  LFIYHLPQEFTDTDLASTFLPFGNVISAKVF----IDKQTSLSKCFGFVSFDNPDSAQVA 98

Query: 79  KRKLDEFVFLGNRLKVSYA 97
            + ++ F     RLKV   
Sbjct: 99  IKAMNGFQVGTKRLKVQLK 117

>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 103

 Score = 36.8 bits (86), Expect = 8e-04
 Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 4/66 (6%)

Query: 35 DDLLKLFATYGDIEECK-PMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLK 93
            +L+LF+  G  + CK   +    DP+    F++F    +A  A   ++    LG  +K
Sbjct: 30 VLILQLFSQIGPCKSCKMITEHTSNDPYC---FVEFYEHRDAAAALAAMNGRKILGKEVK 86

Query: 94 VSYASQ 99
          V++A+ 
Sbjct: 87 VNWATT 92

>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 97

 Score = 36.5 bits (85), Expect = 9e-04
 Identities = 13/63 (20%), Positives = 25/63 (39%), Gaps = 6/63 (9%)

Query: 35 DDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKV 94
            L   F+ +G+I +       +C       F+ +    +A  A  +L+       +LKV
Sbjct: 28 TLLRGAFSPFGNIIDLSMDPPRNCA------FVTYEKMESADQAVAELNGTQVESVQLKV 81

Query: 95 SYA 97
          + A
Sbjct: 82 NIA 84

>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1 Length = 106

 Score = 36.9 bits (86), Expect = 9e-04
 Identities = 17/84 (20%), Positives = 32/84 (38%), Gaps = 6/84 (7%)

Query: 17  CDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECK-PMDAEDCDP--FTDVYFIKFRLFS 73
             E   L V  V      +D+   FA YG+I+     +D        +T    +++  + 
Sbjct: 20  SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYT---LVEYETYK 76

Query: 74  NARFAKRKLDEFVFLGNRLKVSYA 97
            A+ A   L+    +G  + V + 
Sbjct: 77  EAQAAMEGLNGQDLMGQPISVDWC 100

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	230
4fxv_A	99	ELAV-like protein 1; RNA recognition motif, putati	99.91
3s8s_A	110	Histone-lysine N-methyltransferase SETD1A; chromat	99.89
2lxi_A	91	RNA-binding protein 10; NMR {Homo sapiens}	99.88
3md1_A	83	Nuclear and cytoplasmic polyadenylated RNA-bindin	99.87
3mdf_A	85	Peptidyl-prolyl CIS-trans isomerase E; RRM domain,	99.87
2x1f_A	96	MRNA 3'-END-processing protein RNA15; transcriptio	99.86
2dnz_A	95	Probable RNA-binding protein 23; RNA recognition m	99.86
1whw_A	99	Hypothetical protein riken cDNA 1200009A02; RNA re	99.86
1b7f_A	168	Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP	99.86
4f25_A	115	Polyadenylate-binding protein 1; RRM fold, transla	99.86
3bs9_A	87	Nucleolysin TIA-1 isoform P40; RNA recognition mot	99.86
2e5h_A	94	Zinc finger CCHC-type and RNA-binding motif- conta	99.86
2lkz_A	95	RNA-binding protein 5; RRM; NMR {Homo sapiens}	99.86
1fxl_A	167	Paraneoplastic encephalomyelitis antigen HUD; prot	99.86
2cqc_A	95	Arginine/serine-rich splicing factor 10; RNA recog	99.86
1x5t_A	96	Splicing factor 3B subunit 4; structure genomics,	99.86
2cq0_A	103	Eukaryotic translation initiation factor 3 subunit	99.85
3ns6_A	100	Eukaryotic translation initiation factor 3 subuni;	99.85
2do4_A	100	Squamous cell carcinoma antigen recognized by T- c	99.85
2cqb_A	102	Peptidyl-prolyl CIS-trans isomerase E; RNA recogni	99.85
2dgs_A	99	DAZ-associated protein 1; RRM domain, structural g	99.85
2dnm_A	103	SRP46 splicing factor; RRM domain, RBD, structural	99.85
1p27_B	106	RNA-binding protein 8A; nuclear protein, mRNA spli	99.85
2la6_A	99	RNA-binding protein FUS; structural genomics, nort	99.85
1x5u_A	105	Splicing factor 3B subunit 4 (spliceosome associat	99.85
1x5s_A	102	Cold-inducible RNA-binding protein; structure geno	99.85
2div_A	99	TRNA selenocysteine associated protein; structural	99.85
3p5t_L	90	Cleavage and polyadenylation specificity factor S;	99.85
2dgo_A	115	Cytotoxic granule-associated RNA binding protein 1	99.85
1x4h_A	111	RNA-binding protein 28; structural genomics, RRM d	99.85
2cpf_A	98	RNA binding motif protein 19; RNA recognition moti	99.85
2cpz_A	115	CUG triplet repeat RNA-binding protein 1; RRM doma	99.85
1p1t_A	104	Cleavage stimulation factor, 64 kDa subunit; RNA r	99.84
2cph_A	107	RNA binding motif protein 19; RNA recognition moti	99.84
1oo0_B	110	CG8781-PA, drosophila Y14; RNA recognition motif,	99.84
4a8x_A	88	RNA-binding protein with serine-rich domain 1; tra	99.84
3ulh_A	107	THO complex subunit 4; nuclear protein, RNA bindin	99.84
2dnh_A	105	Bruno-like 5, RNA binding protein; RRM domain, RBD	99.84
2d9p_A	103	Polyadenylate-binding protein 3; RRM domain, struc	99.84
2ywk_A	95	Putative RNA-binding protein 11; RRM-domain, struc	99.84
2dgp_A	106	Bruno-like 4, RNA binding protein; RRM domain, str	99.84
2khc_A	118	Testis-specific RNP-type RNA binding protein; RRM,	99.84
3ucg_A	89	Polyadenylate-binding protein 2; ferredoxin-like,	99.84
3s7r_A	87	Heterogeneous nuclear ribonucleoprotein A/B; ferre	99.84
3n9u_C	156	Cleavage and polyadenylation specificity factor S;	99.84
2jrs_A	108	RNA-binding protein 39; RNA binding motif of RBM39	99.83
2cpe_A	113	RNA-binding protein EWS; RNA recognition motif, RR	99.83
2mss_A	75	Protein (musashi1); RNA-binding domain, RNA bindin	99.83
1s79_A	103	Lupus LA protein; RRM, alpha/beta, RNA binding pro	99.83
1x4e_A	85	RNA binding motif, single-stranded interacting pro	99.83
2fy1_A	116	RNA-binding motif protein, Y chromosome, family 1	99.83
2cqp_A	98	RNA-binding protein 12; RNA recognition motif, RRM	99.83
2dng_A	103	Eukaryotic translation initiation factor 4H; RRM d	99.83
3ex7_B	126	RNA-binding protein 8A; protein-RNA complex, mRNA	99.83
2nlw_A	105	Eukaryotic translation initiation factor 3 subunit	99.83
2dgv_A	92	HnRNP M, heterogeneous nuclear ribonucleoprotein M	99.83
2dhg_A	104	TRNA selenocysteine associated protein (SECP43); R	99.83
2ku7_A	140	MLL1 PHD3-CYP33 RRM chimeric protein; transcriptio	99.83
2ek1_A	95	RNA-binding protein 12; RNA recognition motif, dim	99.83
1u6f_A	139	Tcubp1, RNA-binding protein UBP1; trypanosome, mRN	99.83
1wi8_A	104	EIF-4B, eukaryotic translation initiation factor 4	99.83
2do0_A	114	HnRNP M, heterogeneous nuclear ribonucleoprotein M	99.82
2cq4_A	114	RNA binding motif protein 23; RRM domain, structur	99.82
3r27_A	100	HnRNP L, heterogeneous nuclear ribonucleoprotein L	99.82
2dgx_A	96	KIAA0430 protein; RRM domain, structural genomics,	99.82
2qfj_A	216	FBP-interacting repressor; protein-DNA complex; HE	99.82
2kxn_B	129	Transformer-2 protein homolog beta; SR protein, RR	99.82
1h2v_Z	156	20 kDa nuclear CAP binding protein; CAP-binding-co	99.82
4f02_A	213	Polyadenylate-binding protein 1; mRNA, eukaryotic	99.82
2dh8_A	105	DAZ-associated protein 1; RRM domain, structural g	99.82
2dis_A	109	Unnamed protein product; structural genomics, RRM	99.82
2cqi_A	103	Nucleolysin TIAR; RNA recognition motif, RRM, RNA	99.82
2cq3_A	103	RNA-binding protein 9; RRM domain, structural geno	99.82
1uaw_A	77	Mouse-musashi-1; RNP-type structure, RNA binding p	99.82
2cqd_A	116	RNA-binding region containing protein 1; RNA recog	99.82
3lqv_A	115	PRE-mRNA branch site protein P14; cysless mutant,	99.82
2krb_A	81	Eukaryotic translation initiation factor 3 subunit	99.82
2m2b_A	131	RNA-binding protein 10; T-cell, JCSG, MPP, PSI-bio	99.82
2kt5_A	124	RNA and export factor-binding protein 2; chaperone	99.82
2kn4_A	158	Immunoglobulin G-binding protein G, splicing FACT	99.82
2ki2_A	90	SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA	99.82
1l3k_A	196	Heterogeneous nuclear ribonucleoprotein A1; nuclea	99.82
2a3j_A	127	U1 small nuclear ribonucleoprotein A; computationa	99.81
1x4d_A	102	Matrin 3; structural genomics, RRM domain, NPPSFA,	99.81
1x5o_A	114	RNA binding motif, single-stranded interacting pro	99.81
2cpi_A	111	CCR4-NOT transcription complex subunit 4; RNA reco	99.81
2j76_E	100	EIF-4B, EIF4B, eukaryotic translation initiation f	99.81
1wel_A	124	RNA-binding protein 12; structural genomics, NPPSF	99.81
2jwn_A	124	Embryonic polyadenylate-binding protein 2-B; epabp	99.81
1x4a_A	109	Splicing factor, arginine/serine-rich 1 (splicing	99.81
2cqg_A	103	TDP-43, TAR DNA-binding protein-43; RNA recognitio	99.81
1sjq_A	105	Polypyrimidine tract-binding protein 1; babbab mot	99.81
2cq1_A	101	PTB-like protein L; RRM domain, structural genomic	99.81
1rk8_A	165	CG8781-PA, CG8781-PA protein; mRNA processing, RRM	99.8
2rs2_A	109	Musashi-1, RNA-binding protein musashi homolog 1;	99.8
1nu4_A	97	U1A RNA binding domain; RNA recognition motif, U1	99.8
1x4b_A	116	Heterogeneous nuclear ribonucleoproteins A2/B1; st	99.8
3egn_A	143	RNA-binding protein 40; RNA recognition motif (RRM	99.8
2dgw_A	91	Probable RNA-binding protein 19; RRM domain, struc	99.8
3md3_A	166	Nuclear and cytoplasmic polyadenylated RNA-bindin	99.8
2cpx_A	115	Hypothetical protein FLJ11016; RRM domain, structu	99.8
1iqt_A	75	AUF1, heterogeneous nuclear ribonucleoprotein D0;	99.8
1why_A	97	Hypothetical protein riken cDNA 1810017N16; RNA re	99.8
2wbr_A	89	GW182, gawky, LD47780P; DNA-binding protein, RRM,	99.8
1wex_A	104	Hypothetical protein (riken cDNA 2810036L13); stru	99.8
3md3_A	166	Nuclear and cytoplasmic polyadenylated RNA-bindin	99.8
3q2s_C	229	Cleavage and polyadenylation specificity factor S;	99.8
2cpy_A	114	RNA-binding protein 12; RRM domain, structural gen	99.8
2fc9_A	101	NCL protein; structure genomics, RRM_1 domain, str	99.79
2err_A	109	Ataxin-2-binding protein 1; protein-RNA complex, R	99.79
2lea_A	135	Serine/arginine-rich splicing factor 2; SR protein	99.79
2ad9_A	119	Polypyrimidine tract-binding protein 1; RBD, RRM,	99.79
2db1_A	118	Heterogeneous nuclear ribonucleoprotein F; RRM dom	99.79
3nmr_A	175	Cugbp ELAV-like family member 1; RRM, PRE-mRNA spl	99.79
2g4b_A	172	Splicing factor U2AF 65 kDa subunit; protein-RNA c	99.79
1wg5_A	104	Heterogeneous nuclear ribonucleoprotein H; structu	99.79
2dnq_A	90	RNA-binding protein 4B; RRM domain,RBD, structural	99.78
1fj7_A	101	Nucleolin RBD1, protein C23; RNP, RRM, RNA binding	99.78
2cpj_A	99	Non-POU domain-containing octamer-binding protein;	99.78
2ytc_A	85	PRE-mRNA-splicing factor RBM22; RRM domain, RBD, s	99.78
2cjk_A	167	Nuclear polyadenylated RNA-binding protein 4; HRP1	99.78
1whx_A	111	Hypothetical protein riken cDNA 1200009A02; RNA re	99.78
1wez_A	102	HnRNP H', FTP-3, heterogeneous nuclear ribonucleop	99.78
1x4c_A	108	Splicing factor, arginine/serine-rich 1; structura	99.78
2pe8_A	105	Splicing factor 45; RRM, protein binding; 2.00A {H	99.78
2la4_A	101	Nuclear and cytoplasmic polyadenylated RNA-bindin	99.78
2j8a_A	136	Histone-lysine N-methyltransferase, H3 lysine-4 sp	99.78
2fc8_A	102	NCL protein; structure genomics, RRM_1 domain, str	99.78
1x4g_A	109	Nucleolysin TIAR; structural genomics, RRM domain,	99.78
2lmi_A	107	GRSF-1, G-rich sequence factor 1; G-rich RNA seque	99.77
1x4f_A	112	Matrin 3; structural genomics, RRM domain, NPPSFA,	99.77
2lcw_A	116	RNA-binding protein FUS; RRM, nucleic acid binding	99.64
2qfj_A	216	FBP-interacting repressor; protein-DNA complex; HE	99.77
2xs2_A	102	Deleted in azoospermia-like; RNA binding protein-R	99.77
2kvi_A	96	Nuclear polyadenylated RNA-binding protein 3; RNA-	99.77
2hvz_A	101	Splicing factor, arginine/serine-rich 7; RRM, RNA	99.77
1b7f_A	168	Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP	99.77
2xnq_A	97	Nuclear polyadenylated RNA-binding protein 3; tran	99.77
2e5j_A	97	Methenyltetrahydrofolate synthetase domain contain	99.77
2i2y_A	150	Fusion protein consists of immunoglobin G- binding	99.77
1fjc_A	96	Nucleolin RBD2, protein C23; RNP, RRM, RNA binding	99.77
2dgu_A	103	Heterogeneous nuclear ribonucleoprotein Q; RRM dom	99.77
2yh0_A	198	Splicing factor U2AF 65 kDa subunit; PRE-mRNA spli	99.77
2dgt_A	92	RNA-binding protein 30; RRM domain, structural gen	99.77
4f02_A	213	Polyadenylate-binding protein 1; mRNA, eukaryotic	99.77
2cjk_A	167	Nuclear polyadenylated RNA-binding protein 4; HRP1	99.77
2hgl_A	136	HNRPF protein, heterogeneous nuclear ribonucleopro	99.76
2f3j_A	177	RNA and export factor binding protein 2; RRM domai	99.76
2jvo_A	108	Nucleolar protein 3; nucleus, phosphorylation, rib	99.76
2e44_A	96	Insulin-like growth factor 2 mRNA binding protein	99.76
1l3k_A	196	Heterogeneous nuclear ribonucleoprotein A1; nuclea	99.76
1fxl_A	167	Paraneoplastic encephalomyelitis antigen HUD; prot	99.76
2dnp_A	90	RNA-binding protein 14; RRM domain, RBD, structura	99.76
1wg1_A	88	KIAA1579 protein, homolog EXC-7; RBD, structural g	99.76
2diu_A	96	KIAA0430 protein; structural genomics, RRM domain,	99.75
2jvr_A	111	Nucleolar protein 3; RNA recognition motif, nucleu	99.75
1wf1_A	110	RNA-binding protein RALY; structural genomics, RRM	99.75
3pgw_A	282	U1-A; protein-RNA complex, U1 snRNA, SM fold, SM c	99.75
2cpd_A	99	Apobec-1 stimulating protein; RNA recognition moti	99.75
3nmr_A	175	Cugbp ELAV-like family member 1; RRM, PRE-mRNA spl	99.75
2e5g_A	94	U6 snRNA-specific terminal uridylyltransferase 1;	99.75
2cqh_A	93	IGF-II mRNA-binding protein 2 isoform A; RNA recog	99.74
2dha_A	123	FLJ20171 protein; RRM domain, structural genomics,	99.74
3smz_A	284	Protein raver-1, ribonucleoprotein PTB-binding 1;	99.74
3tyt_A	205	Heterogeneous nuclear ribonucleoprotein L; ferredo	99.74
2cq2_A	114	Hypothetical protein LOC91801; RRM domain, structu	99.74
3zzy_A	130	Polypyrimidine tract-binding protein 1; protein bi	99.73
1x5p_A	97	Negative elongation factor E; structure genomics,	99.73
2dnn_A	109	RNA-binding protein 12; RRM domain, RBD, structura	99.73
3pgw_S	437	U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM	99.73
2dnl_A	114	Cytoplasmic polyadenylation element binding protei	99.72
2hgn_A	139	Heterogeneous nuclear ribonucleoprotein F; RNA rec	99.72
3smz_A	284	Protein raver-1, ribonucleoprotein PTB-binding 1;	99.72
3d2w_A	89	TAR DNA-binding protein 43; DP-43 proteinopathy, T	99.71
1sjr_A	164	Polypyrimidine tract-binding protein 1; extended b	99.71
2e5i_A	124	Heterogeneous nuclear ribonucleoprotein L-like; RR	99.71
3v4m_A	105	Splicing factor U2AF 65 kDa subunit; canonical RNA	99.71
3beg_B	115	Splicing factor, arginine/serine-rich 1; kinase, S	99.71
2ghp_A	292	U4/U6 snRNA-associated splicing factor PRP24; RNA	99.7
2hgm_A	126	HNRPF protein, heterogeneous nuclear ribonucleopro	99.7
2g4b_A	172	Splicing factor U2AF 65 kDa subunit; protein-RNA c	99.7
2bz2_A	121	Negative elongation factor E; NELF E, RNA recognit	99.7
1fje_B	175	Nucleolin RBD12, protein C23; RNP, RRM, RNA bindin	99.7
2hzc_A	87	Splicing factor U2AF 65 kDa subunit; RNA splicing,	99.69
1wf0_A	88	TDP-43, TAR DNA-binding protein-43; structural gen	99.69
2ghp_A	292	U4/U6 snRNA-associated splicing factor PRP24; RNA	99.69
3ue2_A	118	Poly(U)-binding-splicing factor PUF60; RNA recogni	99.68
2voo_A	193	Lupus LA protein; RNA-binding protein, RNA recogni	99.68
2dit_A	112	HIV TAT specific factor 1 variant; structural geno	99.68
3pgw_A	282	U1-A; protein-RNA complex, U1 snRNA, SM fold, SM c	99.67
2adc_A	229	Polypyrimidine tract-binding protein 1; RBD, RRM,	99.66
1qm9_A	198	Polypyrimidine tract-binding protein; ribonucleopr	99.66
1jmt_A	104	Splicing factor U2AF 35 kDa subunit; RRM, RNA spli	99.65
1fje_B	175	Nucleolin RBD12, protein C23; RNP, RRM, RNA bindin	99.65
3tyt_A	205	Heterogeneous nuclear ribonucleoprotein L; ferredo	99.64
1qm9_A	198	Polypyrimidine tract-binding protein; ribonucleopr	99.64
3u1l_A	240	PRE-mRNA-splicing factor CWC2; CSMP, zinc finger;	99.63
2yh0_A	198	Splicing factor U2AF 65 kDa subunit; PRE-mRNA spli	99.62
3sde_A	261	Paraspeckle component 1; RRM, anti parallel right	99.62
2adc_A	229	Polypyrimidine tract-binding protein 1; RBD, RRM,	99.61
3sde_A	261	Paraspeckle component 1; RRM, anti parallel right	99.6
3s6e_A	114	RNA-binding protein 39; ferredoxin-like, structura	99.56
3tht_A	345	Alkylated DNA repair protein ALKB homolog 8; struc	99.54
2d9o_A	100	DNAJ (HSP40) homolog, subfamily C, member 17; RRM	99.51
3dxb_A	222	Thioredoxin N-terminally fused to PUF60(UHM); spli	99.33
1owx_A	121	Lupus LA protein, SS-B, LA; RRM, transcription; NM	99.21
2dnr_A	91	Synaptojanin-1; RRM domain, RBD, structural genomi	99.17
1ufw_A	95	Synaptojanin 2; RNP domain, structural genomics, r	98.99
2l9w_A	117	U4/U6 snRNA-associated-splicing factor PRP24; RRM,	98.43
1wey_A	104	Calcipressin 1; structural genomics, RRM domain, r	98.13
1uw4_A	91	UPF3X; nonsense mediated mRNA decay protein, RNA-b	97.8
3ctr_A	101	Poly(A)-specific ribonuclease PARN; protein-RNA-co	97.24
1whv_A	100	Poly(A)-specific ribonuclease; RNA recognition mot	97.24
1wwh_A	119	Nucleoporin 35, nucleoporin; structural genomics,	97.19
2l08_A	97	Regulator of nonsense transcripts 3A; NESG, nonsen	97.0
2kn4_A	158	Immunoglobulin G-binding protein G, splicing FACT	96.28
2i2y_A	150	Fusion protein consists of immunoglobin G- binding	96.24
2dhx_A	104	Poly (ADP-ribose) polymerase family, member 10 var	96.17
3p3d_A	132	Nucleoporin 53; structural genomics, PSI-2, protei	95.87
3pq1_A	464	Poly(A) RNA polymerase; nucleotidyl transferase, R	94.95
3pgw_S	437	U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM	94.71
3d45_A	507	Poly(A)-specific ribonuclease PARN; CAP analogue,	88.78

>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}

Probab=99.91  E-value=6.3e-24  Score=160.96  Aligned_cols=82  Identities=24%  Similarity=0.325  Sum_probs=79.0

Q ss_pred             CCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963           18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA   97 (230)
Q Consensus        18 ~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA   97 (230)
                      -++++|||+|||+.+++++|+++|++||+|.+|.++.|+.|+.++|||||+|.+.++|..|++.|||..|.|++|+|+||
T Consensus        17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~A   96 (99)
T 4fxv_A           17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA   96 (99)
T ss_dssp             CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence            36789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CC
Q 026963           98 SQ   99 (230)
Q Consensus        98 ~e   99 (230)
                      .+
T Consensus        97 kP   98 (99)
T 4fxv_A           97 RP   98 (99)
T ss_dssp             CB
T ss_pred             eC
Confidence            53

>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}

Probab=99.89  E-value=1.2e-22  Score=157.00  Aligned_cols=81  Identities=12%  Similarity=0.089  Sum_probs=78.6

Q ss_pred             CCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963           18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA   97 (230)
Q Consensus        18 ~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA   97 (230)
                      .++++|||+|||+.+++++|+++|++||+|.+|.|+.|+.|++++|||||+|.+.++|..|++.|||..|.|++|+|.+|
T Consensus         4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a   83 (110)
T 3s8s_A            4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD   83 (110)
T ss_dssp             SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred             CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             C
Q 026963           98 S   98 (230)
Q Consensus        98 ~   98 (230)
                      +
T Consensus        84 ~   84 (110)
T 3s8s_A           84 I   84 (110)
T ss_dssp             S
T ss_pred             C
Confidence            4

>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}

Probab=99.88  E-value=3.8e-23  Score=153.99  Aligned_cols=80  Identities=18%  Similarity=0.324  Sum_probs=75.7

Q ss_pred             CCeEEEcCCCCCCCHHHHHHhhccCC-cceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHh-cCceeCCceeEEEec
Q 026963           20 SRYLIVRNVPSLGCGDDLLKLFATYG-DIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKL-DEFVFLGNRLKVSYA   97 (230)
Q Consensus        20 S~~LyV~NLP~~~teedL~~LFS~fG-~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~L-nG~~f~Gr~L~VsyA   97 (230)
                      |++|||+|||+.++++||+++|++|| +|.+|+++.|+.|+.++|||||+|.+.++|..|++.| +|..+.|++|+|+||
T Consensus         1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a   80 (91)
T 2lxi_A            1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS   80 (91)
T ss_dssp             CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence            67899999999999999999999999 8999999999999999999999999999999999988 567899999999999


Q ss_pred             CC
Q 026963           98 SQ   99 (230)
Q Consensus        98 ~e   99 (230)
                      .+
T Consensus        81 ~~   82 (91)
T 2lxi_A           81 DP   82 (91)
T ss_dssp             CS
T ss_pred             CC
Confidence            54

>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0

Probab=99.87  E-value=8.3e-22  Score=141.32  Aligned_cols=80  Identities=15%  Similarity=0.143  Sum_probs=76.9

Q ss_pred             CCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEecCC
Q 026963           20 SRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYASQ   99 (230)
Q Consensus        20 S~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA~e   99 (230)
                      +.+|||+|||..+++++|.++|++||+|.+|.++.++.++.++|||||+|.+.++|..|++.|||..+.|++|+|+||.+
T Consensus         1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~   80 (83)
T 3md1_A            1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK   80 (83)
T ss_dssp             CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred             CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence            35799999999999999999999999999999999999999999999999999999999999999999999999999954

>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*

Probab=99.87  E-value=5.6e-22  Score=142.83  Aligned_cols=81  Identities=21%  Similarity=0.294  Sum_probs=78.5

Q ss_pred             cCCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEe
Q 026963           17 CDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSY   96 (230)
Q Consensus        17 ~~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~Vsy   96 (230)
                      ..++++|||+|||+.+++++|+++|++||+|.+|.++.++.++.++|||||+|.+.++|..|++.|||..|.|++|+|+|
T Consensus         4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~   83 (85)
T 3mdf_A            4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL   83 (85)
T ss_dssp             CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred             CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence            46788999999999999999999999999999999999989999999999999999999999999999999999999999


Q ss_pred             c
Q 026963           97 A   97 (230)
Q Consensus        97 A   97 (230)
                      |
T Consensus        84 a   84 (85)
T 3mdf_A           84 A   84 (85)
T ss_dssp             C
T ss_pred             c
Confidence            8

>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B

Probab=99.86  E-value=1.4e-21  Score=144.94  Aligned_cols=82  Identities=23%  Similarity=0.294  Sum_probs=78.8

Q ss_pred             CCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEecC
Q 026963           19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYAS   98 (230)
Q Consensus        19 eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA~   98 (230)
                      ++++|||+|||..+++++|+++|++||+|.+|.++.++.++.++|||||+|.+.++|..|++.|||..|.|+.|+|.||.
T Consensus         1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~   80 (96)
T 2x1f_A            1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS   80 (96)
T ss_dssp             CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred             CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999995


Q ss_pred             CC
Q 026963           99 QF  100 (230)
Q Consensus        99 e~  100 (230)
                      +.
T Consensus        81 ~~   82 (96)
T 2x1f_A           81 NS   82 (96)
T ss_dssp             CS
T ss_pred             CC
Confidence            43

>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.86  E-value=1.4e-21  Score=143.79  Aligned_cols=82  Identities=24%  Similarity=0.262  Sum_probs=79.0

Q ss_pred             CCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963           18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA   97 (230)
Q Consensus        18 ~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA   97 (230)
                      .++++|||+|||..+++++|+++|++||+|.+|.++.++.++.++|||||+|.+.++|..|++.|||..|.|++|+|.||
T Consensus         3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a   82 (95)
T 2dnz_A            3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV   82 (95)
T ss_dssp             SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred             CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence            57889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CC
Q 026963           98 SQ   99 (230)
Q Consensus        98 ~e   99 (230)
                      .+
T Consensus        83 ~~   84 (95)
T 2dnz_A           83 TE   84 (95)
T ss_dssp             SC
T ss_pred             cc
Confidence            53

>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.86  E-value=1.3e-21  Score=145.15  Aligned_cols=83  Identities=28%  Similarity=0.293  Sum_probs=79.4

Q ss_pred             cCCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEe
Q 026963           17 CDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSY   96 (230)
Q Consensus        17 ~~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~Vsy   96 (230)
                      ..++++|||+|||+.+++++|+++|++||+|.+|.++.++.++.++|||||+|.+.++|..|++.|||..|.|++|+|.|
T Consensus         5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~   84 (99)
T 1whw_A            5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP   84 (99)
T ss_dssp             CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence            45778999999999999999999999999999999999998999999999999999999999999999999999999999


Q ss_pred             cCC
Q 026963           97 ASQ   99 (230)
Q Consensus        97 A~e   99 (230)
                      |.+
T Consensus        85 a~~   87 (99)
T 1whw_A           85 STI   87 (99)
T ss_dssp             CCC
T ss_pred             cCC
Confidence            953

>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A

Probab=99.86  E-value=1.9e-23  Score=164.73  Aligned_cols=163  Identities=20%  Similarity=0.217  Sum_probs=130.0

Q ss_pred             CCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEecC
Q 026963           19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYAS   98 (230)
Q Consensus        19 eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA~   98 (230)
                      ++++|||+|||+.+++++|+++|++||+|.+|.++.++.++.++|||||+|.+.++|..|++.|||..+.|++|+|.|+.
T Consensus         2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~   81 (168)
T 1b7f_A            2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR   81 (168)
T ss_dssp             CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred             CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence            67899999999999999999999999999999999998899999999999999999999999999999999999999995


Q ss_pred             CCCChHHHHHHHHHHHHHHHHHhh-cCCCCCCCcccccc-cCCCCCCCCCCCCcchhhhhhhhcccccccccccccCCCC
Q 026963           99 QFESLADTKDKLETRRKEVLARLN-SGRSKVPNIHSSVD-LGEPSLVTAPLQPNLVSEQITSWQRASSESQRISHVNESP  176 (230)
Q Consensus        99 e~Es~~d~r~Kl~~rr~ev~~Rl~-~n~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (230)
                      +.......            ..+- .|+|..+.+.+.++ +...|   .+.++.++....+...++ .+|..|....++.
T Consensus        82 ~~~~~~~~------------~~l~v~nl~~~~t~~~l~~~f~~~G---~i~~~~i~~~~~~~~~~g-~afV~f~~~~~A~  145 (168)
T 1b7f_A           82 PGGESIKD------------TNLYVTNLPRTITDDQLDTIFGKYG---SIVQKNILRDKLTGRPRG-VAFVRYNKREEAQ  145 (168)
T ss_dssp             CCSSTTTT------------CEEEEESCCTTCCHHHHHHHHTSSS---CEEEEEEEECTTTCCEEE-EEEEEESSHHHHH
T ss_pred             CCcccCCC------------CCEEEeCCCCCCCHHHHHHhhhcCC---cEEEEEEEEcCCCCCcce-EEEEEECCHHHHH
Confidence            43211100            1111 57787777777666 77777   444445555555555677 6888888888888


Q ss_pred             ceeeccCcccccccCchhhHH
Q 026963          177 ITRVSSDKDYFASQSMNQTVR  197 (230)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~v~  197 (230)
                      .+.-.+|..+|.+.+.+.+|+
T Consensus       146 ~A~~~l~g~~~~g~~~~l~V~  166 (168)
T 1b7f_A          146 EAISALNNVIPEGGSQPLSVR  166 (168)
T ss_dssp             HHHHHHTTCCCTTCSSCCEEE
T ss_pred             HHHHHhcCCEecCCCeEEEEE
Confidence            887778888887766666553

>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A

Probab=99.86  E-value=6.3e-22  Score=152.58  Aligned_cols=79  Identities=19%  Similarity=0.275  Sum_probs=73.9

Q ss_pred             CCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEecC
Q 026963           19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYAS   98 (230)
Q Consensus        19 eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA~   98 (230)
                      .+++|||+|||+.+++++|+++|++||+|.+|+|+.+.  +.++|||||+|.+.++|..|++.|||..|.|++|+|.+|.
T Consensus         4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~   81 (115)
T 4f25_A            4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK   81 (115)
T ss_dssp             -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESS
T ss_pred             CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence            36789999999999999999999999999999999885  4589999999999999999999999999999999999995


Q ss_pred             C
Q 026963           99 Q   99 (230)
Q Consensus        99 e   99 (230)
                      .
T Consensus        82 ~   82 (115)
T 4f25_A           82 S   82 (115)
T ss_dssp             C
T ss_pred             C
Confidence            3

>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}

Probab=99.86  E-value=1.5e-21  Score=141.15  Aligned_cols=81  Identities=14%  Similarity=0.175  Sum_probs=77.0

Q ss_pred             CCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963           18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA   97 (230)
Q Consensus        18 ~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA   97 (230)
                      .++.+|||+|||..+++++|+++|++||+|.+|.++.++.++.++|||||+|.+.++|..|++.|||..+.|++|+|.||
T Consensus         4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a   83 (87)
T 3bs9_A            4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA   83 (87)
T ss_dssp             --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred             CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence            45779999999999999999999999999999999999989999999999999999999999999999999999999999


Q ss_pred             C
Q 026963           98 S   98 (230)
Q Consensus        98 ~   98 (230)
                      .
T Consensus        84 ~   84 (87)
T 3bs9_A           84 T   84 (87)
T ss_dssp             C
T ss_pred             C
Confidence            3

>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.86  E-value=1.6e-21  Score=143.14  Aligned_cols=81  Identities=25%  Similarity=0.358  Sum_probs=78.1

Q ss_pred             cCCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEe
Q 026963           17 CDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSY   96 (230)
Q Consensus        17 ~~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~Vsy   96 (230)
                      ..++++|||+|||+.+++++|+++|++||+|.+|.++.++.++.++|||||+|.+.++|..|++.|||..|.|++|+|+|
T Consensus        13 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~   92 (94)
T 2e5h_A           13 APSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASI   92 (94)
T ss_dssp             CCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred             CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEe
Confidence            34678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             c
Q 026963           97 A   97 (230)
Q Consensus        97 A   97 (230)
                      |
T Consensus        93 a   93 (94)
T 2e5h_A           93 A   93 (94)
T ss_dssp             C
T ss_pred             c
Confidence            8

>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}

Probab=99.86  E-value=7.3e-22  Score=149.89  Aligned_cols=80  Identities=14%  Similarity=0.274  Sum_probs=75.4

Q ss_pred             CCCeEEEcCCCCCCCHHHHHHhhccCCc--ceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCc----eeCCcee
Q 026963           19 ESRYLIVRNVPSLGCGDDLLKLFATYGD--IEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEF----VFLGNRL   92 (230)
Q Consensus        19 eS~~LyV~NLP~~~teedL~~LFS~fG~--I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~----~f~Gr~L   92 (230)
                      .-.+|||+|||+.+++++|.++|++||.  |.+|++++|+.|+.++|||||+|.+.++|..|++.|||.    .+.|++|
T Consensus         8 ~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i   87 (95)
T 2lkz_A            8 HMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTI   87 (95)
T ss_dssp             CCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEE
T ss_pred             ccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEE
Confidence            4578999999999999999999999995  679999999999999999999999999999999999997    4899999


Q ss_pred             EEEecC
Q 026963           93 KVSYAS   98 (230)
Q Consensus        93 ~VsyA~   98 (230)
                      .|+||.
T Consensus        88 ~V~~Ak   93 (95)
T 2lkz_A           88 GVDFAK   93 (95)
T ss_dssp             EEEECC
T ss_pred             EEEEcc
Confidence            999994

>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A

Probab=99.86  E-value=4.9e-23  Score=161.44  Aligned_cols=162  Identities=20%  Similarity=0.194  Sum_probs=123.7

Q ss_pred             CCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEecC
Q 026963           19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYAS   98 (230)
Q Consensus        19 eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA~   98 (230)
                      ++++|||+|||+.+++++|+++|++||+|.+|.++.++.++.++|||||+|.+.++|..|++.|||..+.|++|+|.|+.
T Consensus         1 s~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~   80 (167)
T 1fxl_A            1 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR   80 (167)
T ss_dssp             CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred             CcceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecC
Confidence            46899999999999999999999999999999999999899999999999999999999999999999999999999995


Q ss_pred             CCCChHHHHHHHHHHHHHHHHHhh-cCCCCCCCcccccc-cCCCCCCCCCCCCcchhhhhhhhcccccccccccccCCCC
Q 026963           99 QFESLADTKDKLETRRKEVLARLN-SGRSKVPNIHSSVD-LGEPSLVTAPLQPNLVSEQITSWQRASSESQRISHVNESP  176 (230)
Q Consensus        99 e~Es~~d~r~Kl~~rr~ev~~Rl~-~n~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (230)
                      +......            -.++- .|+|..+.+.+.++ +...|   .+.++.++....+...++ .+|..+....+|.
T Consensus        81 ~~~~~~~------------~~~l~v~nl~~~~t~~~l~~~f~~~G---~i~~~~i~~~~~~g~~~g-~afV~f~~~~~A~  144 (167)
T 1fxl_A           81 PSSASIR------------DANLYVSGLPKTMTQKELEQLFSQYG---RIITSRILVDQVTGVSRG-VGFIRFDKRIEAE  144 (167)
T ss_dssp             CCCGGGT------------TCEEEEESCCTTCCHHHHHHHHGGGS---CEEEEEEEECTTTCCEEE-EEEEEESSHHHHH
T ss_pred             CCcccCC------------CCcEEECCCCCcCCHHHHHHHHHhcC---CEeEEEEEecCCCCCccc-eEEEEeCCHHHHH
Confidence            4321110            01122 56777776666555 66677   333344434443444566 5777777777777


Q ss_pred             ceeeccCcccccccCchhhH
Q 026963          177 ITRVSSDKDYFASQSMNQTV  196 (230)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~v  196 (230)
                      .+.-.+|..+|.+...+.+|
T Consensus       145 ~A~~~l~g~~~~g~~~~i~v  164 (167)
T 1fxl_A          145 EAIKGLNGQKPSGATEPITV  164 (167)
T ss_dssp             HHHHHHTTCCCTTCSSCCEE
T ss_pred             HHHHHhcCCccCCCccceEE
Confidence            77777777777776655544

>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.86  E-value=1.7e-21  Score=142.92  Aligned_cols=82  Identities=23%  Similarity=0.293  Sum_probs=78.5

Q ss_pred             cCCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEe
Q 026963           17 CDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSY   96 (230)
Q Consensus        17 ~~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~Vsy   96 (230)
                      ..++++|||+|||+.+++++|+++|++||+|.+|.++.++.++.++|||||+|.+.++|..|++.|||..|.|++|+|+|
T Consensus        12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~   91 (95)
T 2cqc_A           12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSG   91 (95)
T ss_dssp             CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEC
T ss_pred             CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence            34678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cC
Q 026963           97 AS   98 (230)
Q Consensus        97 A~   98 (230)
                      |.
T Consensus        92 a~   93 (95)
T 2cqc_A           92 PS   93 (95)
T ss_dssp             CS
T ss_pred             cC
Confidence            93

>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.86  E-value=1.5e-21  Score=143.75  Aligned_cols=82  Identities=22%  Similarity=0.241  Sum_probs=78.7

Q ss_pred             CCCCeEEEcCCCCCCCHHHHHHhhccCCcceEE-EeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEe
Q 026963           18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEEC-KPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSY   96 (230)
Q Consensus        18 ~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v-~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~Vsy   96 (230)
                      .++++|||+|||+.+++++|.++|++||+|.+| .++.++.++.++|||||+|.+.++|..|++.|||..|.|++|+|.|
T Consensus         3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~   82 (96)
T 1x5t_A            3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY   82 (96)
T ss_dssp             SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence            468899999999999999999999999999999 9999989999999999999999999999999999999999999999


Q ss_pred             cCC
Q 026963           97 ASQ   99 (230)
Q Consensus        97 A~e   99 (230)
                      |.+
T Consensus        83 a~~   85 (96)
T 1x5t_A           83 AFK   85 (96)
T ss_dssp             SCC
T ss_pred             ecc
Confidence            943

>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.85  E-value=2.5e-21  Score=144.91  Aligned_cols=82  Identities=22%  Similarity=0.246  Sum_probs=78.7

Q ss_pred             CCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963           18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA   97 (230)
Q Consensus        18 ~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA   97 (230)
                      +++++|||+|||+.+++++|+++|++||+|.+|.++.++.++.++|||||+|.+.++|..|+..|||..|.|++|+|.||
T Consensus        13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a   92 (103)
T 2cq0_A           13 DDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWA   92 (103)
T ss_dssp             SSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEC
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CC
Q 026963           98 SQ   99 (230)
Q Consensus        98 ~e   99 (230)
                      .+
T Consensus        93 ~~   94 (103)
T 2cq0_A           93 KP   94 (103)
T ss_dssp             SC
T ss_pred             CC
Confidence            53

>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A

Probab=99.85  E-value=8.7e-22  Score=148.38  Aligned_cols=79  Identities=15%  Similarity=0.165  Sum_probs=76.7

Q ss_pred             CCCeEEEcCCCC------CCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCC-ce
Q 026963           19 ESRYLIVRNVPS------LGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLG-NR   91 (230)
Q Consensus        19 eS~~LyV~NLP~------~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~G-r~   91 (230)
                      .+++|||+|||.      .+++++|.++|++||+|.+|.++.++.|++++|||||+|.+.++|..|++.|||..|.| ++
T Consensus         5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~   84 (100)
T 3ns6_A            5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR   84 (100)
T ss_dssp             GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred             cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence            467999999999      88999999999999999999999999999999999999999999999999999999999 99


Q ss_pred             eEEEec
Q 026963           92 LKVSYA   97 (230)
Q Consensus        92 L~VsyA   97 (230)
                      |+|.+|
T Consensus        85 l~V~~a   90 (100)
T 3ns6_A           85 LFLYTM   90 (100)
T ss_dssp             CEEEES
T ss_pred             EEEEEC
Confidence            999999

>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.85  E-value=4.5e-21  Score=142.80  Aligned_cols=83  Identities=16%  Similarity=0.235  Sum_probs=78.6

Q ss_pred             ccCCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEE
Q 026963           16 VCDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVS   95 (230)
Q Consensus        16 v~~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~Vs   95 (230)
                      ...++++|||+|||..+++++|+++|++||+|.+|.++.++ ++.++|||||+|.+.++|..|++.|||..|.|++|+|+
T Consensus        13 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~   91 (100)
T 2do4_A           13 TSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVA   91 (100)
T ss_dssp             SCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred             cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence            34568899999999999999999999999999999999997 89999999999999999999999999999999999999


Q ss_pred             ecCC
Q 026963           96 YASQ   99 (230)
Q Consensus        96 yA~e   99 (230)
                      ||.+
T Consensus        92 ~a~~   95 (100)
T 2do4_A           92 ISNS   95 (100)
T ss_dssp             ECCC
T ss_pred             ECCC
Confidence            9954

>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.85  E-value=2e-21  Score=144.82  Aligned_cols=83  Identities=20%  Similarity=0.286  Sum_probs=79.4

Q ss_pred             cCCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEe
Q 026963           17 CDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSY   96 (230)
Q Consensus        17 ~~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~Vsy   96 (230)
                      ..++++|||+|||+.+++++|+++|++||+|.+|.++.++.++.++|||||+|.+.++|..|++.|||..|.|++|+|.|
T Consensus         9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~   88 (102)
T 2cqb_A            9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL   88 (102)
T ss_dssp             CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEe
Confidence            45788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCC
Q 026963           97 ASQ   99 (230)
Q Consensus        97 A~e   99 (230)
                      |.+
T Consensus        89 a~~   91 (102)
T 2cqb_A           89 AKP   91 (102)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            943

>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.85  E-value=4.9e-21  Score=142.38  Aligned_cols=80  Identities=18%  Similarity=0.227  Sum_probs=77.3

Q ss_pred             CCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963           18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA   97 (230)
Q Consensus        18 ~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA   97 (230)
                      .++++|||+|||..+++++|+++|++||+|.+|.++.++.++.++|||||+|.+.++|..|++ |||..|.|++|+|.||
T Consensus         8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~a   86 (99)
T 2dgs_A            8 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKRA   86 (99)
T ss_dssp             SSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEEC
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEEC
Confidence            467899999999999999999999999999999999999999999999999999999999999 9999999999999999


Q ss_pred             C
Q 026963           98 S   98 (230)
Q Consensus        98 ~   98 (230)
                      .
T Consensus        87 ~   87 (99)
T 2dgs_A           87 E   87 (99)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.85  E-value=2.9e-21  Score=144.51  Aligned_cols=82  Identities=22%  Similarity=0.251  Sum_probs=78.9

Q ss_pred             CCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963           18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA   97 (230)
Q Consensus        18 ~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA   97 (230)
                      .++++|||+|||+.+++++|+++|++||+|.+|.++.++.|+.++|||||+|.+.++|..|++.|||..|.|++|+|.||
T Consensus        11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a   90 (103)
T 2dnm_A           11 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVA   90 (103)
T ss_dssp             SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEEC
T ss_pred             CCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEC
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CC
Q 026963           98 SQ   99 (230)
Q Consensus        98 ~e   99 (230)
                      ..
T Consensus        91 ~~   92 (103)
T 2dnm_A           91 RY   92 (103)
T ss_dssp             SS
T ss_pred             Cc
Confidence            43

>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1

Probab=99.85  E-value=3.2e-21  Score=144.69  Aligned_cols=82  Identities=18%  Similarity=0.287  Sum_probs=78.5

Q ss_pred             cCCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEe
Q 026963           17 CDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSY   96 (230)
Q Consensus        17 ~~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~Vsy   96 (230)
                      ..++++|||+|||..+++++|+++|++||+|.+|.++.++.++.++|||||+|.+.++|..|+..|||..|.|++|+|+|
T Consensus        20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~   99 (106)
T 1p27_B           20 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW   99 (106)
T ss_dssp             BTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEe
Confidence            34667899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cC
Q 026963           97 AS   98 (230)
Q Consensus        97 A~   98 (230)
                      |.
T Consensus       100 a~  101 (106)
T 1p27_B          100 CF  101 (106)
T ss_dssp             SE
T ss_pred             ec
Confidence            94

>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}

Probab=99.85  E-value=4.2e-21  Score=143.03  Aligned_cols=81  Identities=19%  Similarity=0.205  Sum_probs=78.1

Q ss_pred             cCCCCeEEEcCCCCCCCHHHHHHhhccCCcceE--------EEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeC
Q 026963           17 CDESRYLIVRNVPSLGCGDDLLKLFATYGDIEE--------CKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFL   88 (230)
Q Consensus        17 ~~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~--------v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~   88 (230)
                      ..+..+|||+|||..+++++|+++|++||.|.+        |.++.++.++.++|||||+|.+.++|..|++.|||..|.
T Consensus        10 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~   89 (99)
T 2la6_A           10 HSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS   89 (99)
T ss_dssp             CCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSS
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeC
Confidence            456789999999999999999999999999999        999999999999999999999999999999999999999


Q ss_pred             CceeEEEec
Q 026963           89 GNRLKVSYA   97 (230)
Q Consensus        89 Gr~L~VsyA   97 (230)
                      |+.|+|.||
T Consensus        90 g~~l~V~~A   98 (99)
T 2la6_A           90 GNPIKVSFA   98 (99)
T ss_dssp             SSBCEEEEC
T ss_pred             CcEEEEEec
Confidence            999999998

>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.85  E-value=4.1e-21  Score=143.86  Aligned_cols=82  Identities=17%  Similarity=0.196  Sum_probs=78.9

Q ss_pred             cCCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEe
Q 026963           17 CDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSY   96 (230)
Q Consensus        17 ~~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~Vsy   96 (230)
                      ..++++|||+|||+.+++++|+++|++||+|.+|.++.++.++.++|||||+|.+.++|..|++.|||..|.|++|+|.|
T Consensus        12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~   91 (105)
T 1x5u_A           12 RNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNK   91 (105)
T ss_dssp             CCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEE
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence            35678999999999999999999999999999999999998999999999999999999999999999999999999999


Q ss_pred             cC
Q 026963           97 AS   98 (230)
Q Consensus        97 A~   98 (230)
                      |.
T Consensus        92 a~   93 (105)
T 1x5u_A           92 AS   93 (105)
T ss_dssp             TT
T ss_pred             CC
Confidence            94

>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.85  E-value=2.4e-21  Score=144.48  Aligned_cols=82  Identities=18%  Similarity=0.263  Sum_probs=79.0

Q ss_pred             cCCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEe
Q 026963           17 CDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSY   96 (230)
Q Consensus        17 ~~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~Vsy   96 (230)
                      ..++++|||+|||+.+++++|+++|++||+|.+|.++.++.++.++|||||+|.+.++|..|++.|||..|.|++|+|.|
T Consensus         9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~   88 (102)
T 1x5s_A            9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQ   88 (102)
T ss_dssp             CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEE
T ss_pred             CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence            45788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cC
Q 026963           97 AS   98 (230)
Q Consensus        97 A~   98 (230)
                      |.
T Consensus        89 a~   90 (102)
T 1x5s_A           89 AG   90 (102)
T ss_dssp             EE
T ss_pred             CC
Confidence            94

>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.85  E-value=3.3e-21  Score=142.96  Aligned_cols=83  Identities=17%  Similarity=0.193  Sum_probs=79.5

Q ss_pred             cCCCCeEEEcCCCCCCCHHHHHHhhccCCcce-EEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCce----
Q 026963           17 CDESRYLIVRNVPSLGCGDDLLKLFATYGDIE-ECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNR----   91 (230)
Q Consensus        17 ~~eS~~LyV~NLP~~~teedL~~LFS~fG~I~-~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~----   91 (230)
                      ..++++|||+|||+.+++++|+++|++||+|. +|.++.++.++.++|||||+|.+.++|..|++.|||..|.|+.    
T Consensus         6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~   85 (99)
T 2div_A            6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKR   85 (99)
T ss_dssp             CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEE
T ss_pred             CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCccee
Confidence            45789999999999999999999999999999 9999999999999999999999999999999999999999999    


Q ss_pred             eEEEecCC
Q 026963           92 LKVSYASQ   99 (230)
Q Consensus        92 L~VsyA~e   99 (230)
                      |+|+||.+
T Consensus        86 l~v~~a~~   93 (99)
T 2div_A           86 FKLNYATY   93 (99)
T ss_dssp             CCEEETTC
T ss_pred             EEEeecCC
Confidence            99999943

>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C

Probab=99.85  E-value=9.3e-22  Score=144.83  Aligned_cols=78  Identities=15%  Similarity=0.110  Sum_probs=73.2

Q ss_pred             CeEEEcCCCCCCCHHHHHHhhccCC--cceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEecC
Q 026963           21 RYLIVRNVPSLGCGDDLLKLFATYG--DIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYAS   98 (230)
Q Consensus        21 ~~LyV~NLP~~~teedL~~LFS~fG--~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA~   98 (230)
                      .+|||+|||+.+++++|+++|++||  +|.+|.++.++.+|+++|||||+|.+.++|..|++.|||..|.|+.|+|.+|.
T Consensus         2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~   81 (90)
T 3p5t_L            2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN   81 (90)
T ss_dssp             --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred             eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence            3699999999999999999999999  99999999999999999999999999999999999999999999999999994

>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A

Probab=99.85  E-value=7.7e-21  Score=144.78  Aligned_cols=81  Identities=15%  Similarity=0.209  Sum_probs=78.1

Q ss_pred             CCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963           18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA   97 (230)
Q Consensus        18 ~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA   97 (230)
                      .++++|||+|||+.+++++|+++|++||+|.+|.++.++.++.++|||||+|.+.++|..|++.|||..|.|+.|+|.||
T Consensus        13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a   92 (115)
T 2dgo_A           13 SNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA   92 (115)
T ss_dssp             TTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred             CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence            46789999999999999999999999999999999999889999999999999999999999999999999999999999


Q ss_pred             C
Q 026963           98 S   98 (230)
Q Consensus        98 ~   98 (230)
                      .
T Consensus        93 ~   93 (115)
T 2dgo_A           93 T   93 (115)
T ss_dssp             S
T ss_pred             c
Confidence            4

>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.85  E-value=6.2e-21  Score=143.86  Aligned_cols=83  Identities=18%  Similarity=0.237  Sum_probs=79.3

Q ss_pred             cCCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhc------CceeCCc
Q 026963           17 CDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLD------EFVFLGN   90 (230)
Q Consensus        17 ~~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~Ln------G~~f~Gr   90 (230)
                      ..++++|||+|||+.+++++|+++|++||+|.+|.++.++.++.++|||||+|.+.++|..|++.||      |..|.|+
T Consensus        12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~   91 (111)
T 1x4h_A           12 VTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGR   91 (111)
T ss_dssp             CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSC
T ss_pred             CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCE
Confidence            3568899999999999999999999999999999999999999999999999999999999999999      9999999


Q ss_pred             eeEEEecCC
Q 026963           91 RLKVSYASQ   99 (230)
Q Consensus        91 ~L~VsyA~e   99 (230)
                      +|+|.||.+
T Consensus        92 ~l~v~~a~~  100 (111)
T 1x4h_A           92 QLKVDLAVT  100 (111)
T ss_dssp             EEEEECCCC
T ss_pred             EEEEEECCC
Confidence            999999943

>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.85  E-value=4.1e-21  Score=142.25  Aligned_cols=81  Identities=19%  Similarity=0.275  Sum_probs=77.3

Q ss_pred             CCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCC---CCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEE
Q 026963           18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAED---CDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKV   94 (230)
Q Consensus        18 ~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~---tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~V   94 (230)
                      .++++|||+|||+.+++++|+++|++||+|.+|.++.++.   |+.++|||||+|.+.++|..|++.|||..|.|++|+|
T Consensus         3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V   82 (98)
T 2cpf_A            3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV   82 (98)
T ss_dssp             CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence            4678999999999999999999999999999999999876   6799999999999999999999999999999999999


Q ss_pred             EecC
Q 026963           95 SYAS   98 (230)
Q Consensus        95 syA~   98 (230)
                      .||.
T Consensus        83 ~~a~   86 (98)
T 2cpf_A           83 RISE   86 (98)
T ss_dssp             ECSS
T ss_pred             EEcc
Confidence            9994

>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A

Probab=99.85  E-value=5.4e-21  Score=145.94  Aligned_cols=81  Identities=21%  Similarity=0.287  Sum_probs=78.1

Q ss_pred             CCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963           18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA   97 (230)
Q Consensus        18 ~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA   97 (230)
                      .++++|||+|||+.+++++|+++|++||+|.+|.++.++.++.++|||||+|.+.++|..|++.|||..|.|++|+|.||
T Consensus        23 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a  102 (115)
T 2cpz_A           23 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLK  102 (115)
T ss_dssp             STTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred             CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence            45689999999999999999999999999999999999989999999999999999999999999999999999999999


Q ss_pred             C
Q 026963           98 S   98 (230)
Q Consensus        98 ~   98 (230)
                      .
T Consensus       103 ~  103 (115)
T 2cpz_A          103 R  103 (115)
T ss_dssp             C
T ss_pred             C
Confidence            4

>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.84  E-value=2.8e-21  Score=144.20  Aligned_cols=81  Identities=21%  Similarity=0.272  Sum_probs=77.8

Q ss_pred             CCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEecC
Q 026963           19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYAS   98 (230)
Q Consensus        19 eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA~   98 (230)
                      ++++|||+|||..+++++|+++|++||+|.+|.++.++.++.++|||||+|.+.++|..|++.|||..|.|++|+|.||.
T Consensus         7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~   86 (104)
T 1p1t_A            7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAA   86 (104)
T ss_dssp             HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETT
T ss_pred             CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCC
Confidence            46899999999999999999999999999999999999899999999999999999999999999999999999999994


Q ss_pred             C
Q 026963           99 Q   99 (230)
Q Consensus        99 e   99 (230)
                      .
T Consensus        87 ~   87 (104)
T 1p1t_A           87 S   87 (104)
T ss_dssp             C
T ss_pred             C
Confidence            3

>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.84  E-value=7.9e-21  Score=142.44  Aligned_cols=82  Identities=21%  Similarity=0.374  Sum_probs=78.2

Q ss_pred             CCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecC-CCCCCceeEEEEEEccHhHHHHHHHHh-cCceeCCceeEEE
Q 026963           18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDA-EDCDPFTDVYFIKFRLFSNARFAKRKL-DEFVFLGNRLKVS   95 (230)
Q Consensus        18 ~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d-~~tgksrG~AFV~F~d~edA~~A~~~L-nG~~f~Gr~L~Vs   95 (230)
                      .++++|||+|||+.+++++|+++|++||+|.+|.++.+ +.++.++|||||+|.+.++|..|++.| ||..|.|++|+|.
T Consensus        13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v~   92 (107)
T 2cph_A           13 QTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLE   92 (107)
T ss_dssp             SCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEEE
T ss_pred             CCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEEE
Confidence            46789999999999999999999999999999999999 789999999999999999999999999 9999999999999


Q ss_pred             ecCC
Q 026963           96 YASQ   99 (230)
Q Consensus        96 yA~e   99 (230)
                      ||.+
T Consensus        93 ~a~~   96 (107)
T 2cph_A           93 WADS   96 (107)
T ss_dssp             ECCC
T ss_pred             eCCC
Confidence            9943

>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*

Probab=99.84  E-value=5.8e-21  Score=144.42  Aligned_cols=81  Identities=17%  Similarity=0.251  Sum_probs=78.1

Q ss_pred             CCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963           18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA   97 (230)
Q Consensus        18 ~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA   97 (230)
                      .++++|||+|||+.+++++|+++|++||+|.+|.++.++.++.++|||||+|.+.++|..|+..|||..|.|++|+|+||
T Consensus        24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a  103 (110)
T 1oo0_B           24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC  103 (110)
T ss_dssp             TTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEc
Confidence            46678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             C
Q 026963           98 S   98 (230)
Q Consensus        98 ~   98 (230)
                      .
T Consensus       104 ~  104 (110)
T 1oo0_B          104 F  104 (110)
T ss_dssp             E
T ss_pred             c
Confidence            4

>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}

Probab=99.84  E-value=4.7e-21  Score=138.46  Aligned_cols=81  Identities=14%  Similarity=0.146  Sum_probs=76.7

Q ss_pred             CCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCC-ceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEe
Q 026963           18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDP-FTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSY   96 (230)
Q Consensus        18 ~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgk-srG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~Vsy   96 (230)
                      .++++|||+|||..+++++|+++|++||+|.+|.++.+..++. ++|||||+|.+.++|..|++.|||..|.|+.|+|++
T Consensus         2 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~   81 (88)
T 4a8x_A            2 MKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATA   81 (88)
T ss_dssp             CCCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEE
Confidence            3578999999999999999999999999999999999987766 999999999999999999999999999999999999


Q ss_pred             cC
Q 026963           97 AS   98 (230)
Q Consensus        97 A~   98 (230)
                      |.
T Consensus        82 a~   83 (88)
T 4a8x_A           82 VL   83 (88)
T ss_dssp             EC
T ss_pred             CC
Confidence            94

>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A

Probab=99.84  E-value=9.4e-21  Score=142.34  Aligned_cols=80  Identities=15%  Similarity=0.200  Sum_probs=76.8

Q ss_pred             CCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963           18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA   97 (230)
Q Consensus        18 ~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA   97 (230)
                      .++++|||+|||+.+++++|+++|++||+|.+|.++.++ ++.++|||||+|.+.++|..|++.|||..|.|++|+|+||
T Consensus        27 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a  105 (107)
T 3ulh_A           27 ETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLV  105 (107)
T ss_dssp             CCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence            457899999999999999999999999999999999998 8999999999999999999999999999999999999998


Q ss_pred             C
Q 026963           98 S   98 (230)
Q Consensus        98 ~   98 (230)
                      .
T Consensus       106 ~  106 (107)
T 3ulh_A          106 T  106 (107)
T ss_dssp             C
T ss_pred             C
Confidence            3

>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A

Probab=99.84  E-value=1.4e-20  Score=140.91  Aligned_cols=80  Identities=25%  Similarity=0.386  Sum_probs=76.7

Q ss_pred             CCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCC---ceeEE
Q 026963           18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLG---NRLKV   94 (230)
Q Consensus        18 ~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~G---r~L~V   94 (230)
                      .++++|||+|||..+++++|.++|++||+|.+|.++.++ ++.++|||||+|.+.++|..|++.|||..+.|   ++|+|
T Consensus        13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V   91 (105)
T 2dnh_A           13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVV   91 (105)
T ss_dssp             CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEE
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEE
Confidence            467899999999999999999999999999999999997 79999999999999999999999999999998   99999


Q ss_pred             EecC
Q 026963           95 SYAS   98 (230)
Q Consensus        95 syA~   98 (230)
                      .||.
T Consensus        92 ~~a~   95 (105)
T 2dnh_A           92 KFAD   95 (105)
T ss_dssp             EESC
T ss_pred             EECc
Confidence            9994

>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.84  E-value=1.2e-20  Score=141.08  Aligned_cols=79  Identities=22%  Similarity=0.180  Sum_probs=76.1

Q ss_pred             CCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963           18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA   97 (230)
Q Consensus        18 ~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA   97 (230)
                      .++++|||+|||+.+++++|+++|++||+|.+|.++.+  ++.++|||||+|.+.++|..|++.|||..|.|++|+|.||
T Consensus        13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a   90 (103)
T 2d9p_A           13 YQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA   90 (103)
T ss_dssp             SSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence            46889999999999999999999999999999999988  7999999999999999999999999999999999999999


Q ss_pred             C
Q 026963           98 S   98 (230)
Q Consensus        98 ~   98 (230)
                      .
T Consensus        91 ~   91 (103)
T 2d9p_A           91 Q   91 (103)
T ss_dssp             S
T ss_pred             c
Confidence            4

>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}

Probab=99.84  E-value=8.9e-21  Score=139.39  Aligned_cols=80  Identities=19%  Similarity=0.243  Sum_probs=76.3

Q ss_pred             CCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963           18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA   97 (230)
Q Consensus        18 ~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA   97 (230)
                      .++++|||+|||+.+++++|+++|++||+|.+|.++.++. +.++|||||+|.+.++|..|++.|||..|.|++|+|.||
T Consensus        14 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a   92 (95)
T 2ywk_A           14 EADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGP   92 (95)
T ss_dssp             TGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECC
T ss_pred             CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEc
Confidence            4568999999999999999999999999999999999876 999999999999999999999999999999999999999


Q ss_pred             C
Q 026963           98 S   98 (230)
Q Consensus        98 ~   98 (230)
                      .
T Consensus        93 ~   93 (95)
T 2ywk_A           93 S   93 (95)
T ss_dssp             C
T ss_pred             C
Confidence            3

>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A

Probab=99.84  E-value=7.9e-21  Score=142.53  Aligned_cols=81  Identities=20%  Similarity=0.214  Sum_probs=77.7

Q ss_pred             CCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCcee---CCceeEE
Q 026963           18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVF---LGNRLKV   94 (230)
Q Consensus        18 ~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f---~Gr~L~V   94 (230)
                      .++++|||+|||..+++++|+++|++||+|.+|.++.++.++.++|||||+|.+.++|..|++.|||..+   .|++|+|
T Consensus        11 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v   90 (106)
T 2dgp_A           11 HDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQV   90 (106)
T ss_dssp             TTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEE
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEEE
Confidence            4578999999999999999999999999999999999999999999999999999999999999999998   8999999


Q ss_pred             EecC
Q 026963           95 SYAS   98 (230)
Q Consensus        95 syA~   98 (230)
                      .||.
T Consensus        91 ~~a~   94 (106)
T 2dgp_A           91 KPAD   94 (106)
T ss_dssp             EECC
T ss_pred             EECC
Confidence            9994

>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}

Probab=99.84  E-value=7e-21  Score=145.61  Aligned_cols=80  Identities=21%  Similarity=0.263  Sum_probs=77.4

Q ss_pred             CCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963           18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA   97 (230)
Q Consensus        18 ~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA   97 (230)
                      .++++|||+|||+.+++++|+++|++||+|.+|.++.++.++.++|||||+|.+.++|..|++.|||..|.|++|+|+||
T Consensus        38 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a  117 (118)
T 2khc_A           38 PEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQLK  117 (118)
T ss_dssp             CCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEEC
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEec
Confidence            45689999999999999999999999999999999999999999999999999999999999999999999999999998

>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A

Probab=99.84  E-value=9.4e-21  Score=137.43  Aligned_cols=79  Identities=22%  Similarity=0.253  Sum_probs=76.2

Q ss_pred             CCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEecC
Q 026963           19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYAS   98 (230)
Q Consensus        19 eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA~   98 (230)
                      ++++|||+|||+.+++++|+++|++||+|.+|.++.++.++.++|||||+|.+.++|..|+ .|||..|.|++|+|.+|.
T Consensus         5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~   83 (89)
T 3ucg_A            5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR   83 (89)
T ss_dssp             HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred             cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence            3579999999999999999999999999999999999999999999999999999999999 999999999999999994

>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A

Probab=99.84  E-value=1.8e-20  Score=136.06  Aligned_cols=79  Identities=15%  Similarity=0.220  Sum_probs=75.1

Q ss_pred             CCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963           18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA   97 (230)
Q Consensus        18 ~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA   97 (230)
                      .++++|||+|||+.+++++|+++|++||+|.+|.++.++.++.++|||||+|.+.++|..|++. +|..|.|++|.|.+|
T Consensus         9 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v~~A   87 (87)
T 3s7r_A            9 EDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ-KEHRLDGRVIDPKKA   87 (87)
T ss_dssp             SCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHS-SCEEETTEEEEEEEC
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHh-CCCEECCEEEEEEeC
Confidence            4678999999999999999999999999999999999999999999999999999999999955 889999999999987

>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}

Probab=99.84  E-value=2e-20  Score=152.99  Aligned_cols=79  Identities=14%  Similarity=0.085  Sum_probs=76.1

Q ss_pred             CCCeEEEcCCCCCCCHHHHHHhhccCC--cceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEe
Q 026963           19 ESRYLIVRNVPSLGCGDDLLKLFATYG--DIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSY   96 (230)
Q Consensus        19 eS~~LyV~NLP~~~teedL~~LFS~fG--~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~Vsy   96 (230)
                      +.++|||+|||+.+++++|.++|++||  +|.+|.++.|+.||.++|||||+|.+.++|..|+..|||..|.|++|.|.+
T Consensus        54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~  133 (156)
T 3n9u_C           54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP  133 (156)
T ss_dssp             --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence            568999999999999999999999999  999999999999999999999999999999999999999999999999999


Q ss_pred             c
Q 026963           97 A   97 (230)
Q Consensus        97 A   97 (230)
                      |
T Consensus       134 a  134 (156)
T 3n9u_C          134 A  134 (156)
T ss_dssp             C
T ss_pred             c
Confidence            9

>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}

Probab=99.83  E-value=1.2e-20  Score=144.34  Aligned_cols=83  Identities=23%  Similarity=0.234  Sum_probs=78.8

Q ss_pred             cCCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEe
Q 026963           17 CDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSY   96 (230)
Q Consensus        17 ~~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~Vsy   96 (230)
                      ..++++|||+|||..+++++|+++|++||+|.+|.++.++.++.++|||||+|.+.++|..|++.|||..|.|++|+|+|
T Consensus        23 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~  102 (108)
T 2jrs_A           23 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGH  102 (108)
T ss_dssp             CSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEC
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence            34677999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCC
Q 026963           97 ASQ   99 (230)
Q Consensus        97 A~e   99 (230)
                      |.+
T Consensus       103 a~~  105 (108)
T 2jrs_A          103 VTE  105 (108)
T ss_dssp             SCS
T ss_pred             ccc
Confidence            943

>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.83  E-value=1.5e-20  Score=142.77  Aligned_cols=81  Identities=20%  Similarity=0.183  Sum_probs=77.9

Q ss_pred             CCCCeEEEcCCCCCCCHHHHHHhhccCCcce--------EEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCC
Q 026963           18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIE--------ECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLG   89 (230)
Q Consensus        18 ~eS~~LyV~NLP~~~teedL~~LFS~fG~I~--------~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~G   89 (230)
                      .++++|||+|||+.+++++|+++|++||.|.        .|.++.++.++.++|||||+|.+.++|..|++.|||..|.|
T Consensus        13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g   92 (113)
T 2cpe_A           13 SDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQG   92 (113)
T ss_dssp             CCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETT
T ss_pred             CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCC
Confidence            4678999999999999999999999999999        69999999999999999999999999999999999999999


Q ss_pred             ceeEEEecC
Q 026963           90 NRLKVSYAS   98 (230)
Q Consensus        90 r~L~VsyA~   98 (230)
                      ++|+|.||.
T Consensus        93 ~~l~V~~a~  101 (113)
T 2cpe_A           93 SKLKVSLAR  101 (113)
T ss_dssp             EECEEECSS
T ss_pred             CEEEEEECC
Confidence            999999994

>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A

Probab=99.83  E-value=6e-21  Score=135.02  Aligned_cols=75  Identities=11%  Similarity=0.135  Sum_probs=72.8

Q ss_pred             eEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963           22 YLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA   97 (230)
Q Consensus        22 ~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA   97 (230)
                      +|||+|||+.+++++|.++|++||+|.+|.++.++.++.++|||||+|.+.++|..|++ |||..|.|++|+|.+|
T Consensus         1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A   75 (75)
T 2mss_A            1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA   75 (75)
T ss_dssp             CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred             CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence            58999999999999999999999999999999999899999999999999999999998 9999999999999987

>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.83  E-value=5.2e-21  Score=146.50  Aligned_cols=82  Identities=12%  Similarity=0.167  Sum_probs=77.0

Q ss_pred             eeccCCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeE
Q 026963           14 YTVCDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLK   93 (230)
Q Consensus        14 ytv~~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~   93 (230)
                      |....++++|||+|||+.+++++|.++|++||+|.+|.++.++. +.++|||||+|.+.++|..|+. +||..|.|++|.
T Consensus         5 ~~~~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~   82 (103)
T 1s79_A            5 LKNDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLL   82 (103)
T ss_dssp             CSSCSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCE
T ss_pred             ccccCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEE
Confidence            33345678999999999999999999999999999999999987 9999999999999999999999 999999999999


Q ss_pred             EEec
Q 026963           94 VSYA   97 (230)
Q Consensus        94 VsyA   97 (230)
                      |.++
T Consensus        83 V~~~   86 (103)
T 1s79_A           83 ILFK   86 (103)
T ss_dssp             EEEH
T ss_pred             EEEc
Confidence            9999

>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.83  E-value=2.4e-21  Score=140.08  Aligned_cols=81  Identities=23%  Similarity=0.197  Sum_probs=77.8

Q ss_pred             cCCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEe
Q 026963           17 CDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSY   96 (230)
Q Consensus        17 ~~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~Vsy   96 (230)
                      ..++++|||+|||+.+++++|+++|++||+|.+|.++.++.++.++|||||+|.+.++|..|++.|||..|.|+.|+|++
T Consensus         2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~   81 (85)
T 1x4e_A            2 SSGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSG   81 (85)
T ss_dssp             CCCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSC
T ss_pred             CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecC
Confidence            35788999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             c
Q 026963           97 A   97 (230)
Q Consensus        97 A   97 (230)
                      +
T Consensus        82 ~   82 (85)
T 1x4e_A           82 P   82 (85)
T ss_dssp             C
T ss_pred             C
Confidence            7

>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}

Probab=99.83  E-value=2.2e-20  Score=144.62  Aligned_cols=81  Identities=20%  Similarity=0.236  Sum_probs=77.8

Q ss_pred             cCCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEe
Q 026963           17 CDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSY   96 (230)
Q Consensus        17 ~~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~Vsy   96 (230)
                      .+++++|||+|||..+++++|.++|++||+|.+|.++.+. ++.++|||||+|.+.++|..|++.|||..|.|++|+|+|
T Consensus         4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~   82 (116)
T 2fy1_A            4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQ   82 (116)
T ss_dssp             TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEE
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence            4577899999999999999999999999999999999997 899999999999999999999999999999999999999


Q ss_pred             cC
Q 026963           97 AS   98 (230)
Q Consensus        97 A~   98 (230)
                      |.
T Consensus        83 a~   84 (116)
T 2fy1_A           83 AK   84 (116)
T ss_dssp             CC
T ss_pred             CC
Confidence            93

>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.83  E-value=9.5e-21  Score=140.25  Aligned_cols=81  Identities=19%  Similarity=0.168  Sum_probs=77.0

Q ss_pred             CCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963           18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA   97 (230)
Q Consensus        18 ~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA   97 (230)
                      ..+.+|||+|||+.+++++|+++|++||+|..+.++.+..++.++|||||+|.+.++|..|++.|||..|.|++|+|.||
T Consensus        13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a   92 (98)
T 2cqp_A           13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG   92 (98)
T ss_dssp             CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence            34578999999999999999999999999999999988899999999999999999999999999999999999999999


Q ss_pred             C
Q 026963           98 S   98 (230)
Q Consensus        98 ~   98 (230)
                      .
T Consensus        93 ~   93 (98)
T 2cqp_A           93 S   93 (98)
T ss_dssp             S
T ss_pred             C
Confidence            4

>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.83  E-value=2.7e-20  Score=139.57  Aligned_cols=80  Identities=19%  Similarity=0.274  Sum_probs=76.4

Q ss_pred             CCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963           18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA   97 (230)
Q Consensus        18 ~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA   97 (230)
                      .++.+|||+|||+.+++++|+++|++|| |.+|.++.++.|+.++|||||+|.+.++|..|+ .|||..|.|++|+|.||
T Consensus        13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a   90 (103)
T 2dng_A           13 EPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDIA   90 (103)
T ss_dssp             SSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEEC
T ss_pred             CCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEEe
Confidence            4678999999999999999999999997 999999999999999999999999999999999 99999999999999999


Q ss_pred             CC
Q 026963           98 SQ   99 (230)
Q Consensus        98 ~e   99 (230)
                      .+
T Consensus        91 ~~   92 (103)
T 2dng_A           91 EG   92 (103)
T ss_dssp             CC
T ss_pred             cC
Confidence            43

>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*

Probab=99.83  E-value=1.4e-20  Score=145.41  Aligned_cols=82  Identities=18%  Similarity=0.287  Sum_probs=78.4

Q ss_pred             cCCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEe
Q 026963           17 CDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSY   96 (230)
Q Consensus        17 ~~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~Vsy   96 (230)
                      ..++++|||+|||+.+++++|+++|++||+|.+|.++.++.++.++|||||+|.+.++|..|++.|||..|.|+.|+|+|
T Consensus        19 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~   98 (126)
T 3ex7_B           19 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW   98 (126)
T ss_dssp             CSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence            34577999999999999999999999999999999999998999999999999999999999999999999999999999


Q ss_pred             cC
Q 026963           97 AS   98 (230)
Q Consensus        97 A~   98 (230)
                      |.
T Consensus        99 a~  100 (126)
T 3ex7_B           99 CF  100 (126)
T ss_dssp             SE
T ss_pred             ec
Confidence            94

>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}

Probab=99.83  E-value=1.4e-20  Score=142.55  Aligned_cols=83  Identities=19%  Similarity=0.305  Sum_probs=76.1

Q ss_pred             cCCCCeEEEcCCCCCC------CHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCc
Q 026963           17 CDESRYLIVRNVPSLG------CGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGN   90 (230)
Q Consensus        17 ~~eS~~LyV~NLP~~~------teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr   90 (230)
                      ...+++|||+|||+.+      ++++|.++|++||+|.+|.++  +.+|.++|||||+|.+.++|..|++.|||..|.|+
T Consensus        12 ~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~   89 (105)
T 2nlw_A           12 DGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQ   89 (105)
T ss_dssp             CSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTT
T ss_pred             CCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCC
Confidence            3457899999999988      679999999999999999998  46799999999999999999999999999999999


Q ss_pred             -eeEEEecCCCC
Q 026963           91 -RLKVSYASQFE  101 (230)
Q Consensus        91 -~L~VsyA~e~E  101 (230)
                       +|+|++|.+.+
T Consensus        90 ~~l~V~~a~~~~  101 (105)
T 2nlw_A           90 HTFRVNLFTDFD  101 (105)
T ss_dssp             CEEEEECSCCCC
T ss_pred             ceEEEEEcchHh
Confidence             99999996554

>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A

Probab=99.83  E-value=2.4e-20  Score=136.31  Aligned_cols=81  Identities=17%  Similarity=0.105  Sum_probs=76.2

Q ss_pred             cCCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEe
Q 026963           17 CDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSY   96 (230)
Q Consensus        17 ~~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~Vsy   96 (230)
                      ..++++|||+|||+.+++++|+++|++||+|..|.++.+  ++.++|||||+|.+.++|..|++.|||..|.|++|+|.|
T Consensus         5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~   82 (92)
T 2dgv_A            5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRI   82 (92)
T ss_dssp             SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEE
T ss_pred             CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence            356789999999999999999999999999999999874  789999999999999999999999999999999999999


Q ss_pred             cCC
Q 026963           97 ASQ   99 (230)
Q Consensus        97 A~e   99 (230)
                      |.+
T Consensus        83 a~~   85 (92)
T 2dgv_A           83 DRN   85 (92)
T ss_dssp             CSC
T ss_pred             cCC
Confidence            953

>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.83  E-value=1.6e-20  Score=140.44  Aligned_cols=81  Identities=16%  Similarity=0.085  Sum_probs=77.5

Q ss_pred             cCCCCeEEEcCCCCCCCHHHHHHhhcc-CCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCce-eCCceeEE
Q 026963           17 CDESRYLIVRNVPSLGCGDDLLKLFAT-YGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFV-FLGNRLKV   94 (230)
Q Consensus        17 ~~eS~~LyV~NLP~~~teedL~~LFS~-fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~-f~Gr~L~V   94 (230)
                      ..++.+|||+|||+.+++++|+++|++ ||+|.+|.++.++ ++.++|||||+|.+.++|..|++.|||.. |.|++|+|
T Consensus         6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v   84 (104)
T 2dhg_A            6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRL   84 (104)
T ss_dssp             SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCC
T ss_pred             CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEE
Confidence            356789999999999999999999999 9999999999998 89999999999999999999999999999 99999999


Q ss_pred             EecC
Q 026963           95 SYAS   98 (230)
Q Consensus        95 syA~   98 (230)
                      .||.
T Consensus        85 ~~a~   88 (104)
T 2dhg_A           85 SVAI   88 (104)
T ss_dssp             CBCC
T ss_pred             EEcc
Confidence            9994

>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}

Probab=99.83  E-value=2.1e-20  Score=145.64  Aligned_cols=80  Identities=21%  Similarity=0.295  Sum_probs=76.6

Q ss_pred             CCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963           18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA   97 (230)
Q Consensus        18 ~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA   97 (230)
                      .++++|||+|||..+++++|+++|++||+|.+|.++.++.++.++|||||+|.+.++|..|++.|||..|.|++|+|.||
T Consensus        61 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~A  140 (140)
T 2ku7_A           61 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA  140 (140)
T ss_dssp             SSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC-
T ss_pred             CCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEeC
Confidence            35789999999999999999999999999999999999999999999999999999999999999999999999999987

>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A

Probab=99.83  E-value=9e-21  Score=139.35  Aligned_cols=79  Identities=19%  Similarity=0.160  Sum_probs=75.8

Q ss_pred             CCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963           19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA   97 (230)
Q Consensus        19 eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA   97 (230)
                      ++.+|||+|||+.++++||+++|++||+|.++.++.++.++.++|||||+|.+.++|..|++.|||..|.|++|+|++|
T Consensus        14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a   92 (95)
T 2ek1_A           14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP   92 (95)
T ss_dssp             -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence            4578999999999999999999999999999999999999999999999999999999999999999999999999998

>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1

Probab=99.83  E-value=2.3e-20  Score=146.46  Aligned_cols=81  Identities=33%  Similarity=0.399  Sum_probs=78.1

Q ss_pred             CCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963           18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA   97 (230)
Q Consensus        18 ~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA   97 (230)
                      .++++|||+|||..+++++|+++|+.||+|.+|.++.++.++.++|||||+|.+.++|..|++.|||..|.|+.|+|+||
T Consensus        40 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a  119 (139)
T 1u6f_A           40 DVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALA  119 (139)
T ss_dssp             TTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEES
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence            45689999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             C
Q 026963           98 S   98 (230)
Q Consensus        98 ~   98 (230)
                      .
T Consensus       120 ~  120 (139)
T 1u6f_A          120 A  120 (139)
T ss_dssp             S
T ss_pred             C
Confidence            3

>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.83  E-value=2.9e-20  Score=139.53  Aligned_cols=80  Identities=15%  Similarity=0.176  Sum_probs=76.2

Q ss_pred             CCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCC-CCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEe
Q 026963           18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDC-DPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSY   96 (230)
Q Consensus        18 ~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~t-gksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~Vsy   96 (230)
                      .++.+|||+|||+.+++++|+++|++|| |.+|.++.++.+ +.++|||||+|.+.++|..|+ .|||..|.|++|+|.|
T Consensus        13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~   90 (104)
T 1wi8_A           13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDV   90 (104)
T ss_dssp             SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEE
T ss_pred             CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEE
Confidence            4568999999999999999999999999 999999999988 999999999999999999999 9999999999999999


Q ss_pred             cCC
Q 026963           97 ASQ   99 (230)
Q Consensus        97 A~e   99 (230)
                      |.+
T Consensus        91 a~~   93 (104)
T 1wi8_A           91 ADQ   93 (104)
T ss_dssp             CCC
T ss_pred             ccC
Confidence            953

>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.82  E-value=5.2e-20  Score=139.68  Aligned_cols=81  Identities=11%  Similarity=0.070  Sum_probs=77.0

Q ss_pred             cCCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEe
Q 026963           17 CDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSY   96 (230)
Q Consensus        17 ~~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~Vsy   96 (230)
                      ..++++|||+|||..+++++|+++|++||+|.+|.++.++ ++.++|||||+|.+.++|..|++.|||..|.|+.|+|.|
T Consensus        12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~   90 (114)
T 2do0_A           12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKM   90 (114)
T ss_dssp             CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEE
Confidence            3567899999999999999999999999999999999987 599999999999999999999999999999999999999


Q ss_pred             cC
Q 026963           97 AS   98 (230)
Q Consensus        97 A~   98 (230)
                      |.
T Consensus        91 a~   92 (114)
T 2do0_A           91 DE   92 (114)
T ss_dssp             CS
T ss_pred             cc
Confidence            94

>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.82  E-value=1.7e-20  Score=143.01  Aligned_cols=78  Identities=14%  Similarity=0.249  Sum_probs=76.1

Q ss_pred             CCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963           19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA   97 (230)
Q Consensus        19 eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA   97 (230)
                      ++++|||+|||+.+++++|+++|++||+|.+|.++.++.++.++|||||+|.+.++|..|+ .|||..|.|+.|+|.||
T Consensus        24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a  101 (114)
T 2cq4_A           24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQAS  101 (114)
T ss_dssp             HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEH
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEec
Confidence            4679999999999999999999999999999999999999999999999999999999999 99999999999999999

>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}

Probab=99.82  E-value=2.4e-20  Score=144.56  Aligned_cols=79  Identities=16%  Similarity=0.146  Sum_probs=72.2

Q ss_pred             eccCCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCce--eCCcee
Q 026963           15 TVCDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFV--FLGNRL   92 (230)
Q Consensus        15 tv~~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~--f~Gr~L   92 (230)
                      ..+.++++|||+|||+.++++||.++|++||+|.+|.++++      ||||||+|++.++|..|++.|||..  +.|++|
T Consensus        16 ~~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~------kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i   89 (100)
T 3r27_A           16 HKTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK------KRQALVEFEDVLGACNAVNYAADNQIYIAGHPA   89 (100)
T ss_dssp             -CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCEEETTEEE
T ss_pred             ccCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhcCCCceeCCcEE
Confidence            34568999999999999999999999999999999999854      6999999999999999999999987  679999


Q ss_pred             EEEecCC
Q 026963           93 KVSYASQ   99 (230)
Q Consensus        93 ~VsyA~e   99 (230)
                      .|+||..
T Consensus        90 ~V~~S~~   96 (100)
T 3r27_A           90 FVNYSTS   96 (100)
T ss_dssp             EEEECSC
T ss_pred             EEEeccc
Confidence            9999943

>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.82  E-value=2.1e-20  Score=139.32  Aligned_cols=79  Identities=16%  Similarity=0.155  Sum_probs=74.2

Q ss_pred             CCCCeEEEcCCCCCCCHHHHH----HhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeE
Q 026963           18 DESRYLIVRNVPSLGCGDDLL----KLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLK   93 (230)
Q Consensus        18 ~eS~~LyV~NLP~~~teedL~----~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~   93 (230)
                      .++.+|||+|||+.+++++|+    ++|++||+|.+|.++.++.+   +|||||+|.+.++|..|++.|||..|.|++|+
T Consensus         7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~   83 (96)
T 2dgx_A            7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKIL   83 (96)
T ss_dssp             SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred             CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence            356789999999999999999    99999999999999998765   89999999999999999999999999999999


Q ss_pred             EEecCC
Q 026963           94 VSYASQ   99 (230)
Q Consensus        94 VsyA~e   99 (230)
                      |+||.+
T Consensus        84 V~~a~~   89 (96)
T 2dgx_A           84 VSLATG   89 (96)
T ss_dssp             EEECCC
T ss_pred             EEEcCC
Confidence            999954

>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A

Probab=99.82  E-value=1.1e-21  Score=160.70  Aligned_cols=166  Identities=12%  Similarity=0.081  Sum_probs=120.4

Q ss_pred             CCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEecC
Q 026963           19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYAS   98 (230)
Q Consensus        19 eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA~   98 (230)
                      ++++|||+|||..+++++|+++|++||+|.+|.++.+..++.++|||||+|.+.++|..|++.|||..|.|+.|+|.++.
T Consensus        27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~  106 (216)
T 2qfj_A           27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS  106 (216)
T ss_dssp             HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred             cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence            46799999999999999999999999999999999998899999999999999999999999999999999999999985


Q ss_pred             CCCChHHHHHHHHHHHHHHHHHhh-cCCCCCCCcccccc-cCCCCCCCCCCCCcchhhhhhhhcccccccccccccCCCC
Q 026963           99 QFESLADTKDKLETRRKEVLARLN-SGRSKVPNIHSSVD-LGEPSLVTAPLQPNLVSEQITSWQRASSESQRISHVNESP  176 (230)
Q Consensus        99 e~Es~~d~r~Kl~~rr~ev~~Rl~-~n~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (230)
                      ............... ..-...+- .|++..+.+.+.++ +..+|   .+.++.++.+.-+...++ .+|..|....++.
T Consensus       107 ~~~~~~~~~~~~~~~-~~~~~~l~v~nlp~~~t~~~l~~~f~~~G---~v~~v~i~~~~~~g~~~g-~afV~F~~~~~A~  181 (216)
T 2qfj_A          107 NIGQAQPIIDQLAEE-ARAFNRIYVASVHQDLSDDDIKSVFEAFG---KIKSATLARDPTTGKHKG-YGFIEYEKAQSSQ  181 (216)
T ss_dssp             CCGGGHHHHHHHHHH-HTTSCEEEEECCCTTCCHHHHHHHHTTSS---CEEEEEEEECTTTCCEEE-EEEEEESSHHHHH
T ss_pred             Cccccchhhhhhhcc-cCCCcEEEEeCCCCcCCHHHHHHHHhccC---CeeEEEEEecCCCCCcCc-eEEEEecCHHHHH
Confidence            433222111111100 00001111 57888887777766 88888   454555555555555666 5777777777776


Q ss_pred             ceeeccCcccccc
Q 026963          177 ITRVSSDKDYFAS  189 (230)
Q Consensus       177 ~~~~~~~~~~~~~  189 (230)
                      .+.-.+|..+|.+
T Consensus       182 ~A~~~l~g~~~~g  194 (216)
T 2qfj_A          182 DAVSSMNLFDLGG  194 (216)
T ss_dssp             HHHHHHTTCBCSS
T ss_pred             HHHHHccCCEeCC
Confidence            6666666666654

>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A

Probab=99.82  E-value=1.9e-20  Score=148.10  Aligned_cols=84  Identities=20%  Similarity=0.294  Sum_probs=80.1

Q ss_pred             ccCCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEE
Q 026963           16 VCDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVS   95 (230)
Q Consensus        16 v~~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~Vs   95 (230)
                      -.+++++|||+|||+.+++++|+++|++||+|.+|.++.++.++.++|||||+|.+.++|..|++.|||..|.|++|+|.
T Consensus        42 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~  121 (129)
T 2kxn_B           42 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVD  121 (129)
T ss_dssp             CCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEES
T ss_pred             CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence            35678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCC
Q 026963           96 YASQ   99 (230)
Q Consensus        96 yA~e   99 (230)
                      ||.+
T Consensus       122 ~a~~  125 (129)
T 2kxn_B          122 FSIT  125 (129)
T ss_dssp             CCSS
T ss_pred             EecC
Confidence            9943

>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X

Probab=99.82  E-value=5.5e-20  Score=147.42  Aligned_cols=82  Identities=16%  Similarity=0.178  Sum_probs=79.1

Q ss_pred             CCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963           18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA   97 (230)
Q Consensus        18 ~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA   97 (230)
                      .++++|||+|||..+++++|.++|++||+|.+|.|+.++.|+.++|||||+|.+.++|..|+..|||..|.|++|+|+||
T Consensus        37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a  116 (156)
T 1h2v_Z           37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD  116 (156)
T ss_dssp             TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CC
Q 026963           98 SQ   99 (230)
Q Consensus        98 ~e   99 (230)
                      .+
T Consensus       117 ~~  118 (156)
T 1h2v_Z          117 AG  118 (156)
T ss_dssp             SC
T ss_pred             CC
Confidence            54

>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*

Probab=99.82  E-value=1.8e-21  Score=162.98  Aligned_cols=163  Identities=11%  Similarity=0.044  Sum_probs=126.2

Q ss_pred             CCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963           18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA   97 (230)
Q Consensus        18 ~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA   97 (230)
                      .++++|||+|||+.+++++|+++|++||+|.+|+|+.|+.|++++|||||.|.+.++|..|++.|||..+.|+.|+|.++
T Consensus        13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~   92 (213)
T 4f02_A           13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS   92 (213)
T ss_dssp             --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred             CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccc
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCChHHHHHHHHHHHHHHHHHhh-cCCCCCCCcccccc-cCCCCCCCCCCCCcchhhhhhhhcccccccccccccCCC
Q 026963           98 SQFESLADTKDKLETRRKEVLARLN-SGRSKVPNIHSSVD-LGEPSLVTAPLQPNLVSEQITSWQRASSESQRISHVNES  175 (230)
Q Consensus        98 ~e~Es~~d~r~Kl~~rr~ev~~Rl~-~n~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (230)
                      .........          -..+|- .|++..+++.+.++ +..+|   .+.++.++..+  ...++ .+|..|....++
T Consensus        93 ~~~~~~~~~----------~~~~l~v~nl~~~~t~~~l~~~F~~~G---~i~~~~i~~d~--~~~~g-~~fV~f~~~~~a  156 (213)
T 4f02_A           93 QRDPSLRKS----------GVGNIFIKNLDKSIDNKALYDTFSAFG---NILSCKVVCDE--NGSKG-YGFVHFETQEAA  156 (213)
T ss_dssp             CCCTHHHHH----------CTTEEEEESCCTTCCHHHHHHHHGGGS---CEEEEEEEEET--TEEEE-EEEEEESSHHHH
T ss_pred             ccccccccc----------ccccceECCcccccHHHHHHHHHhhcC---CeEEEEeeccC--CCCce-EEEEEeCCHHHH
Confidence            432211100          011222 57888888888777 88888   44444544432  23466 678888888888


Q ss_pred             CceeeccCcccccccCchhhHHH
Q 026963          176 PITRVSSDKDYFASQSMNQTVRL  198 (230)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~v~~  198 (230)
                      ..+.-.+|..+|.+.  ...|++
T Consensus       157 ~~Ai~~lng~~~~g~--~i~V~~  177 (213)
T 4f02_A          157 ERAIEKMNGMLLNDR--KVFVGR  177 (213)
T ss_dssp             HHHHHHHTTCEETTE--ECEEEE
T ss_pred             HHHHHHhCCCEECCE--EEEEEE
Confidence            888777887777664  444433

>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.82  E-value=2.1e-20  Score=140.32  Aligned_cols=81  Identities=17%  Similarity=0.247  Sum_probs=77.9

Q ss_pred             cCCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEe
Q 026963           17 CDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSY   96 (230)
Q Consensus        17 ~~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~Vsy   96 (230)
                      ..+.++|||+|||+.+++++|+++|++||+|.+|.++.++.++.++|||||+|.+.++|..|+.. ||..|.|+.|+|.|
T Consensus        13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~   91 (105)
T 2dh8_A           13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKP   91 (105)
T ss_dssp             SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCC
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEE
Confidence            45678999999999999999999999999999999999999999999999999999999999999 99999999999999


Q ss_pred             cC
Q 026963           97 AS   98 (230)
Q Consensus        97 A~   98 (230)
                      |.
T Consensus        92 a~   93 (105)
T 2dh8_A           92 CT   93 (105)
T ss_dssp             SC
T ss_pred             cc
Confidence            94

>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.82  E-value=2.4e-20  Score=140.50  Aligned_cols=82  Identities=18%  Similarity=0.314  Sum_probs=77.0

Q ss_pred             CCCCeEEEcCCCCCCCHHHHHHhhccCCc-ceEEEee-cCCCCCCceeEEEEEEccHhHHHHHHHHhc--CceeCCceeE
Q 026963           18 DESRYLIVRNVPSLGCGDDLLKLFATYGD-IEECKPM-DAEDCDPFTDVYFIKFRLFSNARFAKRKLD--EFVFLGNRLK   93 (230)
Q Consensus        18 ~eS~~LyV~NLP~~~teedL~~LFS~fG~-I~~v~il-~d~~tgksrG~AFV~F~d~edA~~A~~~Ln--G~~f~Gr~L~   93 (230)
                      .++++|||+|||+.+++++|.++|++||+ |.+|.++ .+..++.++|||||+|.+.++|..|++.||  +..|.|++|+
T Consensus         6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~   85 (109)
T 2dis_A            6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA   85 (109)
T ss_dssp             CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred             cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence            46789999999999999999999999999 9999998 888889999999999999999999999996  5999999999


Q ss_pred             EEecCC
Q 026963           94 VSYASQ   99 (230)
Q Consensus        94 VsyA~e   99 (230)
                      |.||.+
T Consensus        86 V~~a~~   91 (109)
T 2dis_A           86 VDWAEP   91 (109)
T ss_dssp             EEESCS
T ss_pred             EEEcCC
Confidence            999943

>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.82  E-value=5.6e-20  Score=137.51  Aligned_cols=80  Identities=24%  Similarity=0.325  Sum_probs=74.9

Q ss_pred             cCCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEe
Q 026963           17 CDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSY   96 (230)
Q Consensus        17 ~~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~Vsy   96 (230)
                      ..++++|||+|||+.+++++|+++|++||+|.+|.++.+..  .++|||||+|.+.++|..|++.|||..|.|++|+|.|
T Consensus        12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~   89 (103)
T 2cqi_A           12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHT--SNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNW   89 (103)
T ss_dssp             SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCC--SSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred             CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCC--CCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEE
Confidence            34678999999999999999999999999999999999864  3689999999999999999999999999999999999


Q ss_pred             cC
Q 026963           97 AS   98 (230)
Q Consensus        97 A~   98 (230)
                      |.
T Consensus        90 a~   91 (103)
T 2cqi_A           90 AT   91 (103)
T ss_dssp             CC
T ss_pred             CC
Confidence            94

>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.82  E-value=8.7e-20  Score=136.46  Aligned_cols=80  Identities=25%  Similarity=0.320  Sum_probs=75.1

Q ss_pred             cCCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEe
Q 026963           17 CDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSY   96 (230)
Q Consensus        17 ~~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~Vsy   96 (230)
                      ..++++|||+|||+.+++++|+++|++||+|.+|.++.+..  .++|||||+|.+.++|..|++.|||..|.|++|+|.|
T Consensus        12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~   89 (103)
T 2cq3_A           12 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN   89 (103)
T ss_dssp             SCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence            35678999999999999999999999999999999998864  4899999999999999999999999999999999999


Q ss_pred             cC
Q 026963           97 AS   98 (230)
Q Consensus        97 A~   98 (230)
                      |.
T Consensus        90 a~   91 (103)
T 2cq3_A           90 AT   91 (103)
T ss_dssp             CC
T ss_pred             cc
Confidence            94

>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.82  E-value=1.4e-20  Score=133.16  Aligned_cols=76  Identities=12%  Similarity=0.154  Sum_probs=73.9

Q ss_pred             CeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963           21 RYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA   97 (230)
Q Consensus        21 ~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA   97 (230)
                      ++|||+|||+.+++++|+++|++||+|.+|.++.++.++.++|||||.|.+.++|..|++.+| ..+.|++|+|.+|
T Consensus         1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a   76 (77)
T 1uaw_A            1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA   76 (77)
T ss_dssp             CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred             CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence            479999999999999999999999999999999999999999999999999999999999999 9999999999998

>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.82  E-value=3.9e-20  Score=141.38  Aligned_cols=79  Identities=20%  Similarity=0.248  Sum_probs=76.5

Q ss_pred             CCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963           18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA   97 (230)
Q Consensus        18 ~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA   97 (230)
                      .+.++|||+|||+.+++++|+++|++||+|.+|.++.++.++.++|||||+|.+.++|..|++.||+ .|.|++|+|+||
T Consensus        15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~a   93 (116)
T 2cqd_A           15 TTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNLA   93 (116)
T ss_dssp             CSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEES
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEEc
Confidence            3578999999999999999999999999999999999999999999999999999999999999999 899999999999

>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B

Probab=99.82  E-value=3e-20  Score=141.48  Aligned_cols=79  Identities=20%  Similarity=0.329  Sum_probs=74.3

Q ss_pred             cCCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEe
Q 026963           17 CDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSY   96 (230)
Q Consensus        17 ~~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~Vsy   96 (230)
                      ..++++|||+|||+.+++++|+++|++||+|.+|.++.+   +.++|||||+|.+.++|..|+..|||..|.|+.|+|+|
T Consensus         5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~   81 (115)
T 3lqv_A            5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLY   81 (115)
T ss_dssp             TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEE
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence            356789999999999999999999999999999999976   55699999999999999999999999999999999999


Q ss_pred             cC
Q 026963           97 AS   98 (230)
Q Consensus        97 A~   98 (230)
                      |.
T Consensus        82 a~   83 (115)
T 3lqv_A           82 YN   83 (115)
T ss_dssp             CC
T ss_pred             ec
Confidence            94

>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}

Probab=99.82  E-value=1.1e-20  Score=136.28  Aligned_cols=74  Identities=20%  Similarity=0.324  Sum_probs=69.0

Q ss_pred             CCeEEEcCCCCCC------CHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCc-ee
Q 026963           20 SRYLIVRNVPSLG------CGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGN-RL   92 (230)
Q Consensus        20 S~~LyV~NLP~~~------teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr-~L   92 (230)
                      +++|||+|||..+      ++++|.++|++||+|.+|.++  +.++.++|||||+|.+.++|..|++.|||..|.|+ +|
T Consensus         1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l   78 (81)
T 2krb_A            1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF   78 (81)
T ss_dssp             CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCC
T ss_pred             CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeE
Confidence            5789999999988      679999999999999999988  46799999999999999999999999999999999 99


Q ss_pred             EEE
Q 026963           93 KVS   95 (230)
Q Consensus        93 ~Vs   95 (230)
                      +|+
T Consensus        79 ~V~   81 (81)
T 2krb_A           79 RVN   81 (81)
T ss_dssp             CCC
T ss_pred             EeC
Confidence            874

>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}

Probab=99.82  E-value=1.1e-20  Score=148.27  Aligned_cols=80  Identities=18%  Similarity=0.298  Sum_probs=76.6

Q ss_pred             CCCCeEEEcCCCCCCCHHHHHHhhccCCcceE--EEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCc----eeCCce
Q 026963           18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEE--CKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEF----VFLGNR   91 (230)
Q Consensus        18 ~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~--v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~----~f~Gr~   91 (230)
                      .++++|||+|||+.+++++|+++|++||+|..  |+|+.|+.|+.++|||||+|.+. +|..|+..|||.    .+.|++
T Consensus        21 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~   99 (131)
T 2m2b_A           21 NANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKT   99 (131)
T ss_dssp             CCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCC
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEE
Confidence            45789999999999999999999999999977  99999999999999999999999 999999999999    999999


Q ss_pred             eEEEecC
Q 026963           92 LKVSYAS   98 (230)
Q Consensus        92 L~VsyA~   98 (230)
                      |+|+||.
T Consensus       100 l~V~~a~  106 (131)
T 2m2b_A          100 INVEFAK  106 (131)
T ss_dssp             CCCEECC
T ss_pred             EEEEECC
Confidence            9999994

>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}

Probab=99.82  E-value=5.1e-20  Score=142.49  Aligned_cols=81  Identities=15%  Similarity=0.183  Sum_probs=77.4

Q ss_pred             cCCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEe
Q 026963           17 CDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSY   96 (230)
Q Consensus        17 ~~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~Vsy   96 (230)
                      ..++++|||+|||..+++++|+++|++||+|.+|.++.++ ++.++|||||+|.+.++|..|++.|||..|.|++|+|+|
T Consensus        32 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~  110 (124)
T 2kt5_A           32 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL  110 (124)
T ss_dssp             CSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence            3567899999999999999999999999999999999998 899999999999999999999999999999999999999


Q ss_pred             cC
Q 026963           97 AS   98 (230)
Q Consensus        97 A~   98 (230)
                      |.
T Consensus       111 a~  112 (124)
T 2kt5_A          111 VA  112 (124)
T ss_dssp             EC
T ss_pred             eC
Confidence            94

>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}

Probab=99.82  E-value=4.7e-20  Score=147.26  Aligned_cols=82  Identities=22%  Similarity=0.251  Sum_probs=78.4

Q ss_pred             CCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963           18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA   97 (230)
Q Consensus        18 ~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA   97 (230)
                      ....+|||+|||+.+++++|+++|++||+|.+|.++.|+.++.++|||||+|.+.++|..|++.|||..|.|++|+|+||
T Consensus        68 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a  147 (158)
T 2kn4_A           68 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA  147 (158)
T ss_dssp             CBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEE
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence            34689999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CC
Q 026963           98 SQ   99 (230)
Q Consensus        98 ~e   99 (230)
                      .+
T Consensus       148 ~~  149 (158)
T 2kn4_A          148 RY  149 (158)
T ss_dssp             CC
T ss_pred             CC
Confidence            53

>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}

Probab=99.82  E-value=8.2e-21  Score=138.62  Aligned_cols=77  Identities=22%  Similarity=0.317  Sum_probs=74.4

Q ss_pred             CeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEecC
Q 026963           21 RYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYAS   98 (230)
Q Consensus        21 ~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA~   98 (230)
                      ++|||+|||..+++++|.++|++||+|.+|.++.++.++.++|||||+|.+.+ |..|+..|||..+.|++|+|++|.
T Consensus         2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~   78 (90)
T 2ki2_A            2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEAN   78 (90)
T ss_dssp             EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC-
T ss_pred             cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcC
Confidence            47999999999999999999999999999999999999999999999999999 999999999999999999999994

>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A

Probab=99.82  E-value=1.1e-21  Score=158.50  Aligned_cols=161  Identities=10%  Similarity=0.107  Sum_probs=117.3

Q ss_pred             CCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963           18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA   97 (230)
Q Consensus        18 ~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA   97 (230)
                      .++++|||+|||+.+++++|+++|++||+|.+|.++.++.++.++|||||+|.+.++|..|++. +|..+.|+.|.|.++
T Consensus        11 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~~~   89 (196)
T 1l3k_A           11 EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKRA   89 (196)
T ss_dssp             GGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEEEC
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeeecc
Confidence            4578999999999999999999999999999999999999999999999999999999999987 999999999999999


Q ss_pred             CCCCChHHHHHHHHHHHHHHHHHhh-cCCCCCCCcccccc-cCCCCCCCCCCCCcchhhhhhhhcccccccccccccCCC
Q 026963           98 SQFESLADTKDKLETRRKEVLARLN-SGRSKVPNIHSSVD-LGEPSLVTAPLQPNLVSEQITSWQRASSESQRISHVNES  175 (230)
Q Consensus        98 ~e~Es~~d~r~Kl~~rr~ev~~Rl~-~n~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (230)
                      ...+.......      ..-...+- .|+|..+.+.+.++ +..+|   .+.++.++..+-+...++ .+|..|....++
T Consensus        90 ~~~~~~~~~~~------~~~~~~l~V~nLp~~~t~~~l~~~F~~~G---~i~~v~i~~~~~~g~~~g-~afV~F~~~~~A  159 (196)
T 1l3k_A           90 VSREDSQRPGA------HLTVKKIFVGGIKEDTEEHHLRDYFEQYG---KIEVIEIMTDRGSGKKRG-FAFVTFDDHDSV  159 (196)
T ss_dssp             CC-----------------CCSEEEEECCTTTCCHHHHHHHHTTTS---CEEEEEEEECTTTCCEEE-EEEEEESSHHHH
T ss_pred             cCccccccccc------CCCcceEEEeCCCCCCCHHHHHHHHhcCC---CeEEEEEeecCCCCCccc-eEEEEECCHHHH
Confidence            43221110000      00001111 56788887777766 77888   444445544444455666 577777777777


Q ss_pred             CceeeccCccccccc
Q 026963          176 PITRVSSDKDYFASQ  190 (230)
Q Consensus       176 ~~~~~~~~~~~~~~~  190 (230)
                      ..+.-. +...|.+.
T Consensus       160 ~~A~~~-~~~~~~G~  173 (196)
T 1l3k_A          160 DKIVIQ-KYHTVNGH  173 (196)
T ss_dssp             HHHHHC-SCCEETTE
T ss_pred             HHHHHh-CCcEECCE
Confidence            655433 45556553

>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}

Probab=99.81  E-value=2.5e-20  Score=148.47  Aligned_cols=78  Identities=19%  Similarity=0.261  Sum_probs=71.6

Q ss_pred             CCCCeEEEcCCCCCCCHHHHH----HhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeE
Q 026963           18 DESRYLIVRNVPSLGCGDDLL----KLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLK   93 (230)
Q Consensus        18 ~eS~~LyV~NLP~~~teedL~----~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~   93 (230)
                      .++.+|||+|||+.+++++|+    ++|++||+|.+|.+..   ++.++|||||+|.+.++|..|++.|||..|.|++|+
T Consensus        27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~  103 (127)
T 2a3j_A           27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLV  103 (127)
T ss_dssp             SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCE
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEE
Confidence            457899999999999998765    7999999999998864   478999999999999999999999999999999999


Q ss_pred             EEecC
Q 026963           94 VSYAS   98 (230)
Q Consensus        94 VsyA~   98 (230)
                      |+||.
T Consensus       104 V~~a~  108 (127)
T 2a3j_A          104 ITFSE  108 (127)
T ss_dssp             EEECC
T ss_pred             EEEcc
Confidence            99993

>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.81  E-value=2.4e-20  Score=144.00  Aligned_cols=76  Identities=16%  Similarity=0.252  Sum_probs=70.5

Q ss_pred             CCCCeEEEcCCCC-CCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCc--eeCCceeEE
Q 026963           18 DESRYLIVRNVPS-LGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEF--VFLGNRLKV   94 (230)
Q Consensus        18 ~eS~~LyV~NLP~-~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~--~f~Gr~L~V   94 (230)
                      +++++|||+|||+ .++++||.++|++||+|.+|.++.+      +|||||+|++.++|..|++.|||.  .|.|++|+|
T Consensus        13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V   86 (102)
T 1x4d_A           13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRV   86 (102)
T ss_dssp             CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred             CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEE
Confidence            4789999999999 9999999999999999999999876      489999999999999999999975  499999999


Q ss_pred             EecCC
Q 026963           95 SYASQ   99 (230)
Q Consensus        95 syA~e   99 (230)
                      +||..
T Consensus        87 ~~a~~   91 (102)
T 1x4d_A           87 HLSQK   91 (102)
T ss_dssp             EEECC
T ss_pred             EECCC
Confidence            99953

>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.81  E-value=1.1e-19  Score=138.26  Aligned_cols=80  Identities=10%  Similarity=0.179  Sum_probs=76.1

Q ss_pred             CCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCcee--------CC
Q 026963           18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVF--------LG   89 (230)
Q Consensus        18 ~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f--------~G   89 (230)
                      .++++|||+|||..+++++|+++|++||+|.+|.++.++ ++.++|||||.|.+.++|..|++.|||..|        .|
T Consensus        23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~  101 (114)
T 1x5o_A           23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPT  101 (114)
T ss_dssp             CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCS
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCC
Confidence            467899999999999999999999999999999999998 899999999999999999999999999999        68


Q ss_pred             ceeEEEecC
Q 026963           90 NRLKVSYAS   98 (230)
Q Consensus        90 r~L~VsyA~   98 (230)
                      ++|.|.||.
T Consensus       102 ~~l~v~~a~  110 (114)
T 1x5o_A          102 EPLLCKFSG  110 (114)
T ss_dssp             SCBEEEECC
T ss_pred             CceeEEccC
Confidence            889999994

>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.81  E-value=4.1e-20  Score=141.35  Aligned_cols=80  Identities=15%  Similarity=0.225  Sum_probs=74.8

Q ss_pred             CCCeEEEcCCCCCCCHHHHH---HhhccCCcceEEEeecCCCCC---CceeEEEEEEccHhHHHHHHHHhcCceeCCcee
Q 026963           19 ESRYLIVRNVPSLGCGDDLL---KLFATYGDIEECKPMDAEDCD---PFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRL   92 (230)
Q Consensus        19 eS~~LyV~NLP~~~teedL~---~LFS~fG~I~~v~il~d~~tg---ksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L   92 (230)
                      +..+|||+|||+.+++++|.   ++|++||+|.+|.++.+..++   .++|||||+|.+.++|..|++.|||..|.|++|
T Consensus        14 ~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l   93 (111)
T 2cpi_A           14 QKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTL   93 (111)
T ss_dssp             CSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEEE
Confidence            46799999999999999999   999999999999999987654   566999999999999999999999999999999


Q ss_pred             EEEecC
Q 026963           93 KVSYAS   98 (230)
Q Consensus        93 ~VsyA~   98 (230)
                      +|+||.
T Consensus        94 ~V~~a~   99 (111)
T 2cpi_A           94 KASLGT   99 (111)
T ss_dssp             EEESCC
T ss_pred             EEEecc
Confidence            999994

>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}

Probab=99.81  E-value=3.5e-20  Score=139.07  Aligned_cols=81  Identities=15%  Similarity=0.162  Sum_probs=74.2

Q ss_pred             cCCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCC-CCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEE
Q 026963           17 CDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAE-DCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVS   95 (230)
Q Consensus        17 ~~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~-~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~Vs   95 (230)
                      ....++|||+|||..+++++|+++|++|| |.+|.++.++ .+++++|||||+|.+.++|..|+ .|||..|.|+.|+|.
T Consensus        16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~   93 (100)
T 2j76_E           16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVD   93 (100)
T ss_dssp             ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCE
T ss_pred             CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEE
Confidence            35678999999999999999999999999 9999999998 68999999999999999999999 999999999999999


Q ss_pred             ecCC
Q 026963           96 YASQ   99 (230)
Q Consensus        96 yA~e   99 (230)
                      ||.+
T Consensus        94 ~a~~   97 (100)
T 2j76_E           94 VADQ   97 (100)
T ss_dssp             ECCC
T ss_pred             eccC
Confidence            9943

>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.81  E-value=4.8e-20  Score=143.17  Aligned_cols=80  Identities=11%  Similarity=0.091  Sum_probs=75.0

Q ss_pred             cCCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEe
Q 026963           17 CDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSY   96 (230)
Q Consensus        17 ~~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~Vsy   96 (230)
                      ..+..+|||+|||+.+++++|.++|++||.|.++.++.+..++.++|||||+|.+.++|..|+. |||..|.|+.|.|.+
T Consensus        22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~  100 (124)
T 1wel_A           22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHP  100 (124)
T ss_dssp             CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEE
T ss_pred             CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence            3467899999999999999999999999999997666777789999999999999999999999 999999999999999


Q ss_pred             c
Q 026963           97 A   97 (230)
Q Consensus        97 A   97 (230)
                      |
T Consensus       101 a  101 (124)
T 1wel_A          101 I  101 (124)
T ss_dssp             E
T ss_pred             C
Confidence            9

>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}

Probab=99.81  E-value=4.8e-20  Score=142.07  Aligned_cols=79  Identities=24%  Similarity=0.246  Sum_probs=76.1

Q ss_pred             CCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEecC
Q 026963           19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYAS   98 (230)
Q Consensus        19 eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA~   98 (230)
                      ++++|||+|||..+++++|+++|++||+|.+|.++.++.++.++|||||+|.+.++|..|+ .|||..|.|+.|+|+||.
T Consensus        35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~  113 (124)
T 2jwn_A           35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR  113 (124)
T ss_dssp             HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence            3679999999999999999999999999999999999999999999999999999999999 899999999999999994

>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.81  E-value=1.1e-19  Score=137.36  Aligned_cols=79  Identities=22%  Similarity=0.273  Sum_probs=74.0

Q ss_pred             cCCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEe
Q 026963           17 CDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSY   96 (230)
Q Consensus        17 ~~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~Vsy   96 (230)
                      ..++++|||+|||+.+++++|+++|++||+|.+|.+..+   +.++|||||+|.+.++|..|++.|||..|.|++|+|+|
T Consensus        19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~   95 (109)
T 1x4a_A           19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEF   95 (109)
T ss_dssp             CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence            346789999999999999999999999999999999765   56899999999999999999999999999999999999


Q ss_pred             cC
Q 026963           97 AS   98 (230)
Q Consensus        97 A~   98 (230)
                      |.
T Consensus        96 a~   97 (109)
T 1x4a_A           96 PR   97 (109)
T ss_dssp             CC
T ss_pred             cc
Confidence            94

>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.81  E-value=1.5e-19  Score=135.11  Aligned_cols=80  Identities=15%  Similarity=0.223  Sum_probs=75.6

Q ss_pred             CCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963           18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA   97 (230)
Q Consensus        18 ~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA   97 (230)
                      .++++|||+|||+.+++++|+++|++||+|.+|.++.++.++.++|||||+|.+.++|..|++  ++..|.|++|+|.||
T Consensus        13 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~a   90 (103)
T 2cqg_A           13 QKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKLP   90 (103)
T ss_dssp             CCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEECC
T ss_pred             CCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEec
Confidence            457899999999999999999999999999999999999999999999999999999999999  478999999999999


Q ss_pred             CC
Q 026963           98 SQ   99 (230)
Q Consensus        98 ~e   99 (230)
                      .+
T Consensus        91 ~~   92 (103)
T 2cqg_A           91 NS   92 (103)
T ss_dssp             CT
T ss_pred             CC
Confidence            43

>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.81  E-value=4.3e-20  Score=144.17  Aligned_cols=77  Identities=14%  Similarity=0.216  Sum_probs=71.3

Q ss_pred             cCCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhc--CceeCCceeEE
Q 026963           17 CDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLD--EFVFLGNRLKV   94 (230)
Q Consensus        17 ~~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~Ln--G~~f~Gr~L~V   94 (230)
                      ..++.+|||+|||+.++++||.++|++||+|.+|.++.+      +|||||+|++.++|..|++.|+  |..|.|++|+|
T Consensus        13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V   86 (105)
T 1sjq_A           13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI   86 (105)
T ss_dssp             CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCB
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence            457889999999999999999999999999999999975      6999999999999999999886  47899999999


Q ss_pred             EecCC
Q 026963           95 SYASQ   99 (230)
Q Consensus        95 syA~e   99 (230)
                      +||.+
T Consensus        87 ~~A~~   91 (105)
T 1sjq_A           87 QFSNH   91 (105)
T ss_dssp             CCCSS
T ss_pred             EEcCC
Confidence            99954

>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.81  E-value=1.5e-19  Score=138.68  Aligned_cols=77  Identities=13%  Similarity=0.176  Sum_probs=70.8

Q ss_pred             cCCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHh--cCceeCCceeEE
Q 026963           17 CDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKL--DEFVFLGNRLKV   94 (230)
Q Consensus        17 ~~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~L--nG~~f~Gr~L~V   94 (230)
                      ..++++|||+|||+.+++++|.++|++||+|.+|.++.+      +|||||+|++.++|..|++.|  ++..+.|++|+|
T Consensus        12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V   85 (101)
T 2cq1_A           12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYI   85 (101)
T ss_dssp             SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEE
Confidence            357889999999999999999999999999999999875      699999999999999999987  477899999999


Q ss_pred             EecCC
Q 026963           95 SYASQ   99 (230)
Q Consensus        95 syA~e   99 (230)
                      +||..
T Consensus        86 ~~a~~   90 (101)
T 2cq1_A           86 QYSNH   90 (101)
T ss_dssp             EECSC
T ss_pred             EEcCc
Confidence            99953

>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A

Probab=99.80  E-value=1.3e-19  Score=147.25  Aligned_cols=80  Identities=18%  Similarity=0.266  Sum_probs=76.8

Q ss_pred             CCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEecC
Q 026963           19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYAS   98 (230)
Q Consensus        19 eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA~   98 (230)
                      ++++|||+|||+.+++++|+.+|++||+|..|.++.++.|+.++|||||+|.+.++|..|+..|||..|.|++|.|.||.
T Consensus        71 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~  150 (165)
T 1rk8_A           71 EGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCF  150 (165)
T ss_dssp             -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEec
Confidence            45689999999999999999999999999999999999999999999999999999999999999999999999999994

>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}

Probab=99.80  E-value=1.2e-19  Score=138.83  Aligned_cols=85  Identities=11%  Similarity=0.123  Sum_probs=74.9

Q ss_pred             eeccCCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeE
Q 026963           14 YTVCDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLK   93 (230)
Q Consensus        14 ytv~~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~   93 (230)
                      +.-..++++|||+|||..+++++|+++|++||+|.+|.++.++.|+.++|||||+|.+.++|..|+..+ |..|.|+.|+
T Consensus        19 ~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~   97 (109)
T 2rs2_A           19 SHMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTID   97 (109)
T ss_dssp             -------CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEE
T ss_pred             cccCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEE
Confidence            334457789999999999999999999999999999999999999999999999999999999999987 5999999999


Q ss_pred             EEecCC
Q 026963           94 VSYASQ   99 (230)
Q Consensus        94 VsyA~e   99 (230)
                      |.+|..
T Consensus        98 V~~a~~  103 (109)
T 2rs2_A           98 PKVAFP  103 (109)
T ss_dssp             EEECCC
T ss_pred             EEEccC
Confidence            999943

>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...

Probab=99.80  E-value=5.2e-20  Score=135.76  Aligned_cols=79  Identities=20%  Similarity=0.330  Sum_probs=74.0

Q ss_pred             CCCCeEEEcCCCCCCCHHHHH----HhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeE
Q 026963           18 DESRYLIVRNVPSLGCGDDLL----KLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLK   93 (230)
Q Consensus        18 ~eS~~LyV~NLP~~~teedL~----~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~   93 (230)
                      .++++|||+|||+.+++++|+    ++|++||+|.+|.++.   ++.++|||||+|.+.++|..|++.|||..|.|++|+
T Consensus         6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~   82 (97)
T 1nu4_A            6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR   82 (97)
T ss_dssp             CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEE
Confidence            578899999999999999999    9999999999999874   478899999999999999999999999999999999


Q ss_pred             EEecCC
Q 026963           94 VSYASQ   99 (230)
Q Consensus        94 VsyA~e   99 (230)
                      |+||.+
T Consensus        83 v~~a~~   88 (97)
T 1nu4_A           83 IQYAKT   88 (97)
T ss_dssp             EEECSS
T ss_pred             EEEccC
Confidence            999943

>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.80  E-value=1.4e-19  Score=138.33  Aligned_cols=80  Identities=14%  Similarity=0.215  Sum_probs=76.7

Q ss_pred             CCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEecC
Q 026963           19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYAS   98 (230)
Q Consensus        19 eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA~   98 (230)
                      +.++|||+|||+.+++++|+++|++||+|..|.++.++.++.++|||||+|.+.++|..|++. ||..|.|+.|+|.||.
T Consensus        26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~  104 (116)
T 1x4b_A           26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAV  104 (116)
T ss_dssp             HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCS
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECC
Confidence            458999999999999999999999999999999999999999999999999999999999999 9999999999999994


Q ss_pred             C
Q 026963           99 Q   99 (230)
Q Consensus        99 e   99 (230)
                      .
T Consensus       105 ~  105 (116)
T 1x4b_A          105 A  105 (116)
T ss_dssp             S
T ss_pred             C
Confidence            3

>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}

Probab=99.80  E-value=1.9e-20  Score=148.10  Aligned_cols=92  Identities=18%  Similarity=0.199  Sum_probs=77.3

Q ss_pred             eeeccCCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEE--eecC---CCCCCceeEEEEEEccHhHHHHHHHHhcCcee
Q 026963           13 VYTVCDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECK--PMDA---EDCDPFTDVYFIKFRLFSNARFAKRKLDEFVF   87 (230)
Q Consensus        13 vytv~~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~--il~d---~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f   87 (230)
                      -|....++.+|||+|||+.+++++|.++|++||.|..|.  ++.+   ..++.++|||||.|.+.++|..|+..|||..|
T Consensus        38 ~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~  117 (143)
T 3egn_A           38 SYEPGEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVL  117 (143)
T ss_dssp             TCCCCSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEE
T ss_pred             ccCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEe
Confidence            355567889999999999999999999999999998751  1111   24689999999999999999999999999999


Q ss_pred             CCceeEEEecCCCCChH
Q 026963           88 LGNRLKVSYASQFESLA  104 (230)
Q Consensus        88 ~Gr~L~VsyA~e~Es~~  104 (230)
                      .|++|+|+||.......
T Consensus       118 ~g~~l~V~~a~~~~~~~  134 (143)
T 3egn_A          118 FGKPMVVQFARSARPKQ  134 (143)
T ss_dssp             TTEECEEEECCCSCC--
T ss_pred             CCcEEEEEECCCCCCcc
Confidence            99999999996544443

>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.80  E-value=2.9e-19  Score=130.87  Aligned_cols=79  Identities=11%  Similarity=0.108  Sum_probs=75.2

Q ss_pred             CCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963           18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA   97 (230)
Q Consensus        18 ~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA   97 (230)
                      .++.+|||+|||+.+++++|+++|++| .|.+|.++.+ .++.++|||||+|.+.++|..|++ |||..|.|+.|+|.+|
T Consensus         8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a   84 (91)
T 2dgw_A            8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFRE   84 (91)
T ss_dssp             CCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEE
T ss_pred             CCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEEC
Confidence            467899999999999999999999999 9999999999 789999999999999999999999 9999999999999999


Q ss_pred             CC
Q 026963           98 SQ   99 (230)
Q Consensus        98 ~e   99 (230)
                      .+
T Consensus        85 ~~   86 (91)
T 2dgw_A           85 KS   86 (91)
T ss_dssp             SS
T ss_pred             Cc
Confidence            43

>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}

Probab=99.80  E-value=2.6e-19  Score=140.01  Aligned_cols=81  Identities=16%  Similarity=0.165  Sum_probs=77.8

Q ss_pred             CCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963           18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA   97 (230)
Q Consensus        18 ~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA   97 (230)
                      .++.+|||+|||..+++++|.++|++||+|.++.++.+..++.++|+|||+|.+.++|..|++.|||..|.|++|+|+||
T Consensus        85 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a  164 (166)
T 3md3_A           85 DDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWA  164 (166)
T ss_dssp             TTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred             CCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEec
Confidence            45679999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             C
Q 026963           98 S   98 (230)
Q Consensus        98 ~   98 (230)
                      .
T Consensus       165 ~  165 (166)
T 3md3_A          165 A  165 (166)
T ss_dssp             C
T ss_pred             C
Confidence            3

>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.80  E-value=3.2e-20  Score=141.05  Aligned_cols=87  Identities=17%  Similarity=0.206  Sum_probs=74.8

Q ss_pred             eeeeccCCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCce
Q 026963           12 RVYTVCDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNR   91 (230)
Q Consensus        12 kvytv~~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~   91 (230)
                      +-+....++++|||+|||+.+++++|+++|++||.|..|.+..+..++.++|||||+|.+.++|..|++.|||..|.|++
T Consensus        17 ~~~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~   96 (115)
T 2cpx_A           17 SSYNPGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKI   96 (115)
T ss_dssp             CCCCCCSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCB
T ss_pred             cccCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcE
Confidence            33455567899999999999999999999999999943333222236899999999999999999999999999999999


Q ss_pred             eEEEecC
Q 026963           92 LKVSYAS   98 (230)
Q Consensus        92 L~VsyA~   98 (230)
                      |+|+||.
T Consensus        97 l~v~~a~  103 (115)
T 2cpx_A           97 LVIEFGK  103 (115)
T ss_dssp             CEEEECC
T ss_pred             EEEEEcc
Confidence            9999994

>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A

Probab=99.80  E-value=3.9e-20  Score=130.53  Aligned_cols=75  Identities=12%  Similarity=0.138  Sum_probs=72.4

Q ss_pred             eEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963           22 YLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA   97 (230)
Q Consensus        22 ~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA   97 (230)
                      +|||+|||+.+++++|+++|++||+|.+|.++.++.++.++|||||+|.+.++|..|++. +|..+.|+.|+|.+|
T Consensus         1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~v~~a   75 (75)
T 1iqt_A            1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEIKVA   75 (75)
T ss_dssp             CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTBCCCEEEC
T ss_pred             CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEC
Confidence            589999999999999999999999999999999999999999999999999999999996 999999999999986

>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.80  E-value=2.3e-19  Score=133.12  Aligned_cols=80  Identities=20%  Similarity=0.319  Sum_probs=74.0

Q ss_pred             eeccCCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeC--Cce
Q 026963           14 YTVCDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFL--GNR   91 (230)
Q Consensus        14 ytv~~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~--Gr~   91 (230)
                      |....++++|||+|||+.+++++|+++|++||+|.+|.++.+      +|||||+|.+.++|..|++.|||..|.  |++
T Consensus        11 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~   84 (97)
T 1why_A           11 YGKANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRR   84 (97)
T ss_dssp             CCCCCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCB
T ss_pred             CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcE
Confidence            445677899999999999999999999999999999999864      689999999999999999999999999  999


Q ss_pred             eEEEecCC
Q 026963           92 LKVSYASQ   99 (230)
Q Consensus        92 L~VsyA~e   99 (230)
                      |+|.||.+
T Consensus        85 l~V~~a~~   92 (97)
T 1why_A           85 LRVDFAKS   92 (97)
T ss_dssp             CEEEECCC
T ss_pred             EEEEECCC
Confidence            99999943

>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}

Probab=99.80  E-value=6.7e-20  Score=140.30  Aligned_cols=73  Identities=18%  Similarity=0.214  Sum_probs=70.0

Q ss_pred             CCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963           19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA   97 (230)
Q Consensus        19 eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA   97 (230)
                      .|..|||+||++.+++++|++||++||+|.+|++..      ++|||||+|.+.++|..|++.|||..++|++|+|.+|
T Consensus         6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A   78 (89)
T 2wbr_A            6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESP   78 (89)
T ss_dssp             CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred             ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence            467899999999999999999999999999999975      5899999999999999999999999999999999999

>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.80  E-value=1.6e-19  Score=139.01  Aligned_cols=76  Identities=16%  Similarity=0.178  Sum_probs=70.4

Q ss_pred             cCCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCce--eCCceeEE
Q 026963           17 CDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFV--FLGNRLKV   94 (230)
Q Consensus        17 ~~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~--f~Gr~L~V   94 (230)
                      +.++++|||+|||+.+++++|.++|++||+|.+|.++.+      +|||||+|++.++|..|++.|||..  +.|++|+|
T Consensus        12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V   85 (104)
T 1wex_A           12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFF   85 (104)
T ss_dssp             CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEE
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence            467899999999999999999999999999999999864      6999999999999999999998754  99999999


Q ss_pred             EecC
Q 026963           95 SYAS   98 (230)
Q Consensus        95 syA~   98 (230)
                      +||.
T Consensus        86 ~~a~   89 (104)
T 1wex_A           86 NYST   89 (104)
T ss_dssp             EECS
T ss_pred             EEcc
Confidence            9994

>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}

Probab=99.80  E-value=5.6e-21  Score=149.52  Aligned_cols=154  Identities=16%  Similarity=0.112  Sum_probs=111.7

Q ss_pred             CeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEecCCC
Q 026963           21 RYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYASQF  100 (230)
Q Consensus        21 ~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA~e~  100 (230)
                      ++|||+|||..+++++|+++|++||+|.+|.++.++. +.++|||||+|.+.++|..|++.|||..+.|++|+|.++.+.
T Consensus         1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~   79 (166)
T 3md3_A            1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKN-NKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS   79 (166)
T ss_dssp             CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC--CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred             CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCC-CCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence            5899999999999999999999999999999999865 779999999999999999999999999999999999999543


Q ss_pred             CChHHHHHHHHHHHHHHHHHhh-cCCCCCCCcccccc-cCCCCCCCCCCCCcchhhhhhhhcccccccccccccCCCCce
Q 026963          101 ESLADTKDKLETRRKEVLARLN-SGRSKVPNIHSSVD-LGEPSLVTAPLQPNLVSEQITSWQRASSESQRISHVNESPIT  178 (230)
Q Consensus       101 Es~~d~r~Kl~~rr~ev~~Rl~-~n~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (230)
                      .......          ...+- .|+|..+.+.+.++ +..+|   .+.++.++.+.-+...++ .+|..+....+|..+
T Consensus        80 ~~~~~~~----------~~~l~v~nl~~~~t~~~l~~~f~~~G---~i~~~~i~~~~~~~~~~g-~afV~f~~~~~A~~A  145 (166)
T 3md3_A           80 QQSSSDD----------TFNLFVGDLNVNVDDETLRNAFKDFP---SYLSGHVMWDMQTGSSRG-YGFVSFTSQDDAQNA  145 (166)
T ss_dssp             CCCCCTT----------CEEEEEESCCTTCCHHHHHHHHTTST---TEEEEEEEECTTTCCEEE-EEEEEESCHHHHHHH
T ss_pred             CCCCCCC----------CceEEECCCCCCCCHHHHHHHHhccC---CeeEEEEEecCCCCCcce-EEEEEeCCHHHHHHH
Confidence            2211000          00111 46777776666655 66677   333344434434444555 567777666666666


Q ss_pred             eeccCcccccc
Q 026963          179 RVSSDKDYFAS  189 (230)
Q Consensus       179 ~~~~~~~~~~~  189 (230)
                      .-.+|...|.+
T Consensus       146 ~~~l~g~~~~g  156 (166)
T 3md3_A          146 MDSMQGQDLNG  156 (166)
T ss_dssp             HHHHTTCEETT
T ss_pred             HHHhCCCccCC
Confidence            55555555544

>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C

Probab=99.80  E-value=1.3e-19  Score=156.17  Aligned_cols=84  Identities=17%  Similarity=0.134  Sum_probs=76.1

Q ss_pred             eeccCCCCeEEEcCCCCCCCHHHHHHhhccCC--cceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCce
Q 026963           14 YTVCDESRYLIVRNVPSLGCGDDLLKLFATYG--DIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNR   91 (230)
Q Consensus        14 ytv~~eS~~LyV~NLP~~~teedL~~LFS~fG--~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~   91 (230)
                      |+......+|||+|||+.+++++|+++|++||  +|++|+|+.|+.|++++|||||+|.+.++|..||+.|||+.|.|+.
T Consensus        62 ~~~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~  141 (229)
T 3q2s_C           62 YTYTGKRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQN  141 (229)
T ss_dssp             -------CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBC
T ss_pred             ccCCCCccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEE
Confidence            55556778999999999999999999999999  9999999999999999999999999999999999999999999999


Q ss_pred             eEEEec
Q 026963           92 LKVSYA   97 (230)
Q Consensus        92 L~VsyA   97 (230)
                      |+|.||
T Consensus       142 l~V~~a  147 (229)
T 3q2s_C          142 PVVTPV  147 (229)
T ss_dssp             CEEEEC
T ss_pred             eEEEEC
Confidence            999999

>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.80  E-value=1.1e-19  Score=139.48  Aligned_cols=80  Identities=14%  Similarity=0.062  Sum_probs=76.5

Q ss_pred             ccCCCCeEEEcCCCCCCCHHHHHHhhccCCcc-eEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEE
Q 026963           16 VCDESRYLIVRNVPSLGCGDDLLKLFATYGDI-EECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKV   94 (230)
Q Consensus        16 v~~eS~~LyV~NLP~~~teedL~~LFS~fG~I-~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~V   94 (230)
                      ...++.+|||+|||+.+++++|+++|++||.| .+|.++.|+ ++.++|||||+|.+.++|..|+.. ||..|.|++|.|
T Consensus        11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v   88 (114)
T 2cpy_A           11 VNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFV   88 (114)
T ss_dssp             CCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEE
T ss_pred             CCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEE
Confidence            35678899999999999999999999999999 899999998 899999999999999999999998 999999999999


Q ss_pred             Eec
Q 026963           95 SYA   97 (230)
Q Consensus        95 syA   97 (230)
                      .+|
T Consensus        89 ~~a   91 (114)
T 2cpy_A           89 HVV   91 (114)
T ss_dssp             EEE
T ss_pred             EEC
Confidence            999

>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.79  E-value=3e-19  Score=133.12  Aligned_cols=79  Identities=19%  Similarity=0.242  Sum_probs=72.7

Q ss_pred             cCCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEe
Q 026963           17 CDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSY   96 (230)
Q Consensus        17 ~~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~Vsy   96 (230)
                      ..++++|||+|||+.+++++|+++|++||.|   .++.+ .++.++|||||+|.+.++|..|+..|||..|.|++|+|.|
T Consensus        12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~   87 (101)
T 2fc9_A           12 SGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLEL   87 (101)
T ss_dssp             SCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEE
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEE
Confidence            3568899999999999999999999999988   56666 6799999999999999999999999999999999999999


Q ss_pred             cCC
Q 026963           97 ASQ   99 (230)
Q Consensus        97 A~e   99 (230)
                      |.+
T Consensus        88 a~~   90 (101)
T 2fc9_A           88 QGP   90 (101)
T ss_dssp             CSS
T ss_pred             cCC
Confidence            943

>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.79  E-value=2.1e-19  Score=137.16  Aligned_cols=79  Identities=25%  Similarity=0.344  Sum_probs=74.4

Q ss_pred             CCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963           18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA   97 (230)
Q Consensus        18 ~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA   97 (230)
                      .++++|||+|||..+++++|+++|++||+|.+|.++.+.  +.++|||||+|.+.++|..|++.|||..|.|++|+|+||
T Consensus        27 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a  104 (109)
T 2err_A           27 SQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA  104 (109)
T ss_dssp             TCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred             CCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence            357899999999999999999999999999999999885  458999999999999999999999999999999999999


Q ss_pred             C
Q 026963           98 S   98 (230)
Q Consensus        98 ~   98 (230)
                      .
T Consensus       105 ~  105 (109)
T 2err_A          105 T  105 (109)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A

Probab=99.79  E-value=7e-20  Score=145.67  Aligned_cols=82  Identities=22%  Similarity=0.251  Sum_probs=78.3

Q ss_pred             CCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963           18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA   97 (230)
Q Consensus        18 ~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA   97 (230)
                      .++++|||+|||+.+++++|+++|++||+|.+|.++.++.++.++|||||+|.+.++|..|++.|||..|.|++|+|.||
T Consensus        45 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a  124 (135)
T 2lea_A           45 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA  124 (135)
T ss_dssp             GGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEEC
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence            35679999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CC
Q 026963           98 SQ   99 (230)
Q Consensus        98 ~e   99 (230)
                      .+
T Consensus       125 ~~  126 (135)
T 2lea_A          125 RY  126 (135)
T ss_dssp             CC
T ss_pred             CC
Confidence            54

>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.79  E-value=2.1e-19  Score=142.81  Aligned_cols=77  Identities=14%  Similarity=0.217  Sum_probs=71.6

Q ss_pred             cCCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcC--ceeCCceeEE
Q 026963           17 CDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDE--FVFLGNRLKV   94 (230)
Q Consensus        17 ~~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG--~~f~Gr~L~V   94 (230)
                      +.++++|||+|||+.++++||+++|++||+|.+|.++.+      +|||||+|++.++|..|++.|+|  ..|.|++|+|
T Consensus        28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V  101 (119)
T 2ad9_A           28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI  101 (119)
T ss_dssp             SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEE
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEE
Confidence            567899999999999999999999999999999999975      69999999999999999999985  6899999999


Q ss_pred             EecCC
Q 026963           95 SYASQ   99 (230)
Q Consensus        95 syA~e   99 (230)
                      +||..
T Consensus       102 ~~a~~  106 (119)
T 2ad9_A          102 QFSNH  106 (119)
T ss_dssp             EECSS
T ss_pred             EEccC
Confidence            99943

>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.79  E-value=7e-19  Score=136.49  Aligned_cols=79  Identities=10%  Similarity=0.096  Sum_probs=75.4

Q ss_pred             cCCCCeEEEcCCCCCCCHHHHHHhhccCCc---ceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeE
Q 026963           17 CDESRYLIVRNVPSLGCGDDLLKLFATYGD---IEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLK   93 (230)
Q Consensus        17 ~~eS~~LyV~NLP~~~teedL~~LFS~fG~---I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~   93 (230)
                      ..+..+|||+|||+.++++||+++|+.||.   |.+|+++.++. ++++|||||+|.+.++|..|++ |||..|.|+.|+
T Consensus        14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~   91 (118)
T 2db1_A           14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYIE   91 (118)
T ss_dssp             BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEE
T ss_pred             CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEE
Confidence            356789999999999999999999999999   89999999987 9999999999999999999999 999999999999


Q ss_pred             EEec
Q 026963           94 VSYA   97 (230)
Q Consensus        94 VsyA   97 (230)
                      |.+|
T Consensus        92 V~~a   95 (118)
T 2db1_A           92 VFKS   95 (118)
T ss_dssp             EEEE
T ss_pred             EEEC
Confidence            9999

>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A

Probab=99.79  E-value=3.8e-21  Score=152.07  Aligned_cols=163  Identities=15%  Similarity=0.095  Sum_probs=118.8

Q ss_pred             CCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCC--CceeEEEEEEccHhHHHHHHHHhcCceeC---Ccee
Q 026963           18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCD--PFTDVYFIKFRLFSNARFAKRKLDEFVFL---GNRL   92 (230)
Q Consensus        18 ~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tg--ksrG~AFV~F~d~edA~~A~~~LnG~~f~---Gr~L   92 (230)
                      +++++|||+|||+.+++++|+++|++||+|.+|.++.++.++  .++|||||+|.+.++|..|++.|||..+.   ++++
T Consensus         1 s~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~   80 (175)
T 3nmr_A            1 SDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPI   80 (175)
T ss_dssp             CCCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred             CCceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccce
Confidence            367899999999999999999999999999999999998887  89999999999999999999999999887   6789


Q ss_pred             EEEecCCCCChHHHHHHHHHHHHHHHHHhh-cCCCCCCCcccccc-cCCCCCCCCCCCCcchhhhhhhhccccccccccc
Q 026963           93 KVSYASQFESLADTKDKLETRRKEVLARLN-SGRSKVPNIHSSVD-LGEPSLVTAPLQPNLVSEQITSWQRASSESQRIS  170 (230)
Q Consensus        93 ~VsyA~e~Es~~d~r~Kl~~rr~ev~~Rl~-~n~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (230)
                      .+.++.........           ...+- .|+|..+++...++ +..+|   .+.++.+++.. +...++ .+|..|.
T Consensus        81 ~~~~~~~~~~~~~~-----------~~~l~v~nl~~~~t~~~l~~~F~~~G---~i~~v~~~~~~-~g~~~g-~afV~f~  144 (175)
T 3nmr_A           81 QMKPADSEKNNAVE-----------DRKLFIGMISKKCTENDIRVMFSSFG---QIEECRILRGP-DGLSRG-CAFVTFT  144 (175)
T ss_dssp             EEEECGGGCCSCGG-----------GSEEEEESCCTTCCHHHHHHHHGGGS---CEEEEEEEECT-TSCEEE-EEEEEES
T ss_pred             EEccccccccccCC-----------CCeEEEcCCCCcCCHHHHHHHHHhCC---CEEEEEEEECC-CCCEEE-EEEEEEC
Confidence            99988432211100           01122 57888877777666 77777   34334443332 233455 5777777


Q ss_pred             ccCCCCceeeccCcc-cccccCchhhH
Q 026963          171 HVNESPITRVSSDKD-YFASQSMNQTV  196 (230)
Q Consensus       171 ~~~~~~~~~~~~~~~-~~~~~~~~~~v  196 (230)
                      ...+|..+.-.+|.. .+.+..++.+|
T Consensus       145 ~~~~A~~A~~~l~g~~~~~g~~~~l~V  171 (175)
T 3nmr_A          145 TRAMAQTAIKAMHQAQTMEGCSSPMVV  171 (175)
T ss_dssp             SHHHHHHHHHHHTTSCCCTTCSSCCEE
T ss_pred             CHHHHHHHHHHhcCCcccCCCCCCeEE
Confidence            777777776666643 34443455444

>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A

Probab=99.79  E-value=4.6e-19  Score=140.42  Aligned_cols=79  Identities=14%  Similarity=0.196  Sum_probs=76.8

Q ss_pred             CCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963           19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA   97 (230)
Q Consensus        19 eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA   97 (230)
                      .+.+|||+|||..+++++|+++|++||+|..|.++.++.++.++|||||+|.+.++|..|++.|||..|.|++|+|+||
T Consensus        93 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A  171 (172)
T 2g4b_A           93 GAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA  171 (172)
T ss_dssp             TTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred             CCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence            4689999999999999999999999999999999999889999999999999999999999999999999999999998

>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.79  E-value=4.2e-19  Score=134.23  Aligned_cols=79  Identities=13%  Similarity=0.090  Sum_probs=74.7

Q ss_pred             CCCCeEEEcCCCCCCCHHHHHHhhccCCcceE-EEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEe
Q 026963           18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEE-CKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSY   96 (230)
Q Consensus        18 ~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~-v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~Vsy   96 (230)
                      .++.+|||+|||+.++++||+++|++||.|.+ |.++.+ .+++++|||||+|.+.++|..|+.. ||..+.|+.|.|.+
T Consensus        13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~   90 (104)
T 1wg5_A           13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFK   90 (104)
T ss_dssp             SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEE
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEE
Confidence            45689999999999999999999999999998 889888 7899999999999999999999998 99999999999999


Q ss_pred             cC
Q 026963           97 AS   98 (230)
Q Consensus        97 A~   98 (230)
                      +.
T Consensus        91 ~~   92 (104)
T 1wg5_A           91 SS   92 (104)
T ss_dssp             EC
T ss_pred             CC
Confidence            84

>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.78  E-value=5.8e-19  Score=129.28  Aligned_cols=74  Identities=22%  Similarity=0.376  Sum_probs=70.0

Q ss_pred             cCCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEe
Q 026963           17 CDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSY   96 (230)
Q Consensus        17 ~~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~Vsy   96 (230)
                      ..++++|||+|||+.+++++|+++|++||+|.+|.++        +|||||+|.+.++|..|++.|||..|.|++|+|.|
T Consensus         5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~   76 (90)
T 2dnq_A            5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEA   76 (90)
T ss_dssp             SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEC
T ss_pred             CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEE
Confidence            3467899999999999999999999999999999997        48999999999999999999999999999999999


Q ss_pred             cC
Q 026963           97 AS   98 (230)
Q Consensus        97 A~   98 (230)
                      |.
T Consensus        77 a~   78 (90)
T 2dnq_A           77 SK   78 (90)
T ss_dssp             SS
T ss_pred             CC
Confidence            94

>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1

Probab=99.78  E-value=3.4e-20  Score=138.23  Aligned_cols=80  Identities=11%  Similarity=0.085  Sum_probs=74.7

Q ss_pred             CCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963           18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA   97 (230)
Q Consensus        18 ~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA   97 (230)
                      .++.+|||+|||+.+++++|+++|++||+|.. .++.+..++.++|||||+|.+.++|..|++ |||..|.|+.|+|.||
T Consensus        15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a   92 (101)
T 1fj7_A           15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKP   92 (101)
T ss_dssp             SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECC
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEc
Confidence            35779999999999999999999999999998 777777889999999999999999999999 9999999999999999


Q ss_pred             CC
Q 026963           98 SQ   99 (230)
Q Consensus        98 ~e   99 (230)
                      .+
T Consensus        93 ~~   94 (101)
T 1fj7_A           93 KG   94 (101)
T ss_dssp             SC
T ss_pred             CC
Confidence            53

>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.78  E-value=5.3e-19  Score=131.57  Aligned_cols=76  Identities=28%  Similarity=0.408  Sum_probs=71.6

Q ss_pred             CCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963           18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA   97 (230)
Q Consensus        18 ~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA   97 (230)
                      .++++|||+|||+.+++++|+++|++||+|.+|.++.+      +|||||+|.+.++|..|++.|||..|.|++|+|.||
T Consensus        13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a   86 (99)
T 2cpj_A           13 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFA   86 (99)
T ss_dssp             CCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEES
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEc
Confidence            46789999999999999999999999999999999865      699999999999999999999999999999999999


Q ss_pred             CC
Q 026963           98 SQ   99 (230)
Q Consensus        98 ~e   99 (230)
                      .+
T Consensus        87 ~~   88 (99)
T 2cpj_A           87 CH   88 (99)
T ss_dssp             SC
T ss_pred             CC
Confidence            53

>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.78  E-value=4.6e-19  Score=127.75  Aligned_cols=74  Identities=23%  Similarity=0.333  Sum_probs=70.2

Q ss_pred             CCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHh-cCceeCCceeEEEe
Q 026963           18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKL-DEFVFLGNRLKVSY   96 (230)
Q Consensus        18 ~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~L-nG~~f~Gr~L~Vsy   96 (230)
                      .++++|||+|||..+++++|+++|++||+|.+|.++.+      +|||||+|.+.++|..|++.| ||..+.|++|+|.|
T Consensus        10 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~   83 (85)
T 2ytc_A           10 KTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKW   83 (85)
T ss_dssp             SSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEE
T ss_pred             CCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEe
Confidence            45689999999999999999999999999999999864      699999999999999999999 99999999999999


Q ss_pred             c
Q 026963           97 A   97 (230)
Q Consensus        97 A   97 (230)
                      |
T Consensus        84 a   84 (85)
T 2ytc_A           84 G   84 (85)
T ss_dssp             C
T ss_pred             c
Confidence            8

>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C

Probab=99.78  E-value=2.3e-20  Score=147.32  Aligned_cols=152  Identities=13%  Similarity=0.099  Sum_probs=112.4

Q ss_pred             CCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEecC
Q 026963           19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYAS   98 (230)
Q Consensus        19 eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA~   98 (230)
                      ++++|||+|||+.+++++|+++|++||+|.+|.++.++.++.++|||||+|.+.++|..|+..  +..+.|+.|.|.++.
T Consensus         2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~~   79 (167)
T 2cjk_A            2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRAI   79 (167)
T ss_dssp             GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEECC
T ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEccccccc
Confidence            578999999999999999999999999999999999999999999999999999999999995  679999999999993


Q ss_pred             CCCChHHHHHHHHHHHHHHHHHhh-cCCCCCCCcccccc-cCCCCCCCCCCCCcchhhhhhhhcccccccccccccCCCC
Q 026963           99 QFESLADTKDKLETRRKEVLARLN-SGRSKVPNIHSSVD-LGEPSLVTAPLQPNLVSEQITSWQRASSESQRISHVNESP  176 (230)
Q Consensus        99 e~Es~~d~r~Kl~~rr~ev~~Rl~-~n~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (230)
                      .   ..+..         -...+- .|+|..+.+.+.++ +..+|   .+.++.++..+-+...++ .+|..|....++.
T Consensus        80 ~---~~~~~---------~~~~l~V~nlp~~~t~~~l~~~F~~~G---~i~~~~i~~~~~~g~~~g-~afV~f~~~~~a~  143 (167)
T 2cjk_A           80 P---RDEQD---------KTGKIFVGGIGPDVRPKEFEEFFSQWG---TIIDAQLMLDKDTGQSRG-FGFVTYDSADAVD  143 (167)
T ss_dssp             C---HHHHH---------HCEEEEEEEECTTCCHHHHHHHHHTTS---CCSEEECCCSSSSSTTSE-EEEEEESSHHHHH
T ss_pred             c---hhhcc---------CCCeEEECCCCCCCCHHHHHHHHHhCc---cEEEEEEEEcCCCCccce-EEEEEECCHHHHH
Confidence            2   21110         001121 56777777776666 77777   444444444444455666 5677776666655


Q ss_pred             ceeeccCcccccc
Q 026963          177 ITRVSSDKDYFAS  189 (230)
Q Consensus       177 ~~~~~~~~~~~~~  189 (230)
                      .+.- +|..+|.+
T Consensus       144 ~A~~-~~~~~~~g  155 (167)
T 2cjk_A          144 RVCQ-NKFIDFKD  155 (167)
T ss_dssp             HHHH-CSEECSSS
T ss_pred             HHHh-CCCEEeCC
Confidence            4432 44444444

>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.78  E-value=2.9e-19  Score=137.27  Aligned_cols=75  Identities=17%  Similarity=0.185  Sum_probs=70.2

Q ss_pred             CCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEecC
Q 026963           19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYAS   98 (230)
Q Consensus        19 eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA~   98 (230)
                      .+++|||+|||+.+++++|+++|++||+|.+|.++.      ++|||||+|.+.++|..|++.|||..|.|++|+|+||+
T Consensus         9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~   82 (111)
T 1whx_A            9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAP   82 (111)
T ss_dssp             EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence            356899999999999999999999999999999875      46899999999999999999999999999999999995


Q ss_pred             C
Q 026963           99 Q   99 (230)
Q Consensus        99 e   99 (230)
                      .
T Consensus        83 ~   83 (111)
T 1whx_A           83 I   83 (111)
T ss_dssp             T
T ss_pred             C
Confidence            3

>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.78  E-value=5.7e-19  Score=134.26  Aligned_cols=80  Identities=13%  Similarity=0.117  Sum_probs=73.7

Q ss_pred             cCCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEe
Q 026963           17 CDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSY   96 (230)
Q Consensus        17 ~~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~Vsy   96 (230)
                      ..++.+|||+|||+.++++||+++|++||.| +|.|+.++ +++++|||||+|.+.++|..|+ .+||..|.|+.|+|.+
T Consensus        12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~   88 (102)
T 1wez_A           12 STTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGP-DGRVTGEADVEFATHEDAVAAM-AKDKANMQHRYVELFL   88 (102)
T ss_dssp             CSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESS-SSCEEEEEEEECSSSHHHHHHH-TTSSCCSSSSCCEEEE
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECC-CCCEeeEEEEEECCHHHHHHHH-HhCCCeECCcEEEEEE
Confidence            3456799999999999999999999999955 99999997 8999999999999999999999 5799999999999999


Q ss_pred             cCC
Q 026963           97 ASQ   99 (230)
Q Consensus        97 A~e   99 (230)
                      +..
T Consensus        89 ~~~   91 (102)
T 1wez_A           89 NST   91 (102)
T ss_dssp             ECC
T ss_pred             CCC
Confidence            853

>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.78  E-value=1e-18  Score=132.71  Aligned_cols=75  Identities=20%  Similarity=0.274  Sum_probs=70.9

Q ss_pred             CCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCC-----cee
Q 026963           18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLG-----NRL   92 (230)
Q Consensus        18 ~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~G-----r~L   92 (230)
                      ..+.+|||+|||+.+++++|+++|++||+|..|.++.+       |||||+|.+.++|..|++.|||+.|.|     ++|
T Consensus        13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i   85 (108)
T 1x4c_A           13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI   85 (108)
T ss_dssp             SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEE
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEE
Confidence            35679999999999999999999999999999999876       899999999999999999999999999     999


Q ss_pred             EEEecCC
Q 026963           93 KVSYASQ   99 (230)
Q Consensus        93 ~VsyA~e   99 (230)
                      +|.+|.+
T Consensus        86 ~V~~a~~   92 (108)
T 1x4c_A           86 RVKVDGP   92 (108)
T ss_dssp             EEEESSC
T ss_pred             EEEeCCC
Confidence            9999943

>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A

Probab=99.78  E-value=1e-18  Score=134.70  Aligned_cols=82  Identities=17%  Similarity=0.229  Sum_probs=74.3

Q ss_pred             cCCCCeEEEcCCCC-----CCCHHHHHHhhccCCcceEEEeecCCCC-CCceeEEEEEEccHhHHHHHHHHhcCceeCCc
Q 026963           17 CDESRYLIVRNVPS-----LGCGDDLLKLFATYGDIEECKPMDAEDC-DPFTDVYFIKFRLFSNARFAKRKLDEFVFLGN   90 (230)
Q Consensus        17 ~~eS~~LyV~NLP~-----~~teedL~~LFS~fG~I~~v~il~d~~t-gksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr   90 (230)
                      +.++++|+|+||..     ..+++||+++|++||+|.+|.|+.++.+ +.++|||||+|.+.++|..|++.|||..|.|+
T Consensus         5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr   84 (105)
T 2pe8_A            5 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGR   84 (105)
T ss_dssp             GSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred             CCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence            56899999999973     2367999999999999999999998754 68999999999999999999999999999999


Q ss_pred             eeEEEecC
Q 026963           91 RLKVSYAS   98 (230)
Q Consensus        91 ~L~VsyA~   98 (230)
                      +|+|.||+
T Consensus        85 ~i~v~~a~   92 (105)
T 2pe8_A           85 VVKACFYN   92 (105)
T ss_dssp             ECEEEECC
T ss_pred             EEEEEEcC
Confidence            99999994

>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}

Probab=99.78  E-value=4.2e-19  Score=132.29  Aligned_cols=74  Identities=24%  Similarity=0.419  Sum_probs=69.9

Q ss_pred             CCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEecC
Q 026963           19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYAS   98 (230)
Q Consensus        19 eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA~   98 (230)
                      .+++|||+|||..+++++|+++|++||+|.+|.++.      ++|||||+|.+.++|..|+..|||..|.|+.|+|.||.
T Consensus        26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~   99 (101)
T 2la4_A           26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP------EKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGK   99 (101)
T ss_dssp             SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCC
T ss_pred             CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEecc
Confidence            367999999999999999999999999999999983      47999999999999999999999999999999999994

>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}

Probab=99.78  E-value=8.6e-19  Score=143.34  Aligned_cols=108  Identities=17%  Similarity=0.202  Sum_probs=88.3

Q ss_pred             CeEEEcCC----CCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEcc----HhH----HHHHHH--HhcCce
Q 026963           21 RYLIVRNV----PSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRL----FSN----ARFAKR--KLDEFV   86 (230)
Q Consensus        21 ~~LyV~NL----P~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d----~ed----A~~A~~--~LnG~~   86 (230)
                      ..|||+||    |+.+++.+|+++|++||+|.+|.++.|++||.++|||||.|.|    +++    |..|+.  .|||..
T Consensus         3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~   82 (136)
T 2j8a_A            3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF   82 (136)
T ss_dssp             CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred             cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence            67999999    9999999999999999999999999999999999999999997    544    899988  899999


Q ss_pred             eCCceeEEEecCCCCChHHHHHHHHHHHHHHHHHhhcCCCCCC
Q 026963           87 FLGNRLKVSYASQFESLADTKDKLETRRKEVLARLNSGRSKVP  129 (230)
Q Consensus        87 f~Gr~L~VsyA~e~Es~~d~r~Kl~~rr~ev~~Rl~~n~~~~~  129 (230)
                      |.|++|+|.+-++-.. ..+.++.-..-.+-+.+++.|+.+..
T Consensus        83 I~Gr~irV~ln~~g~~-~~~~~~~i~~~~~~~~~~~~~~~~~~  124 (136)
T 2j8a_A           83 IMGFKFEVILNKHSIL-NNIISKFVEINVKKLQKLQENLKKAK  124 (136)
T ss_dssp             ETTEEEEEEECCTTHH-HHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred             ecCcEEEEEECcccHH-HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999975444 55556555444555667777765543

>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.78  E-value=1.1e-18  Score=129.88  Aligned_cols=79  Identities=16%  Similarity=0.249  Sum_probs=73.4

Q ss_pred             cCCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEe
Q 026963           17 CDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSY   96 (230)
Q Consensus        17 ~~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~Vsy   96 (230)
                      ..++++|||+|||+.+++++|+++|+.|+   .|.++.++.++.++|||||+|.+.++|..|++.|||..|.|+.|+|.|
T Consensus        12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~   88 (102)
T 2fc8_A           12 SQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDW   88 (102)
T ss_dssp             SCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred             CCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence            35678999999999999999999999885   677888888899999999999999999999999999999999999999


Q ss_pred             cC
Q 026963           97 AS   98 (230)
Q Consensus        97 A~   98 (230)
                      |.
T Consensus        89 a~   90 (102)
T 2fc8_A           89 AK   90 (102)
T ss_dssp             CC
T ss_pred             ec
Confidence            94

>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.78  E-value=7.5e-19  Score=133.12  Aligned_cols=76  Identities=14%  Similarity=0.221  Sum_probs=71.8

Q ss_pred             CCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963           18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA   97 (230)
Q Consensus        18 ~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA   97 (230)
                      .++++|||+|||..+++++|+++|++||+|.+|.++.+      +|||||+|.+.++|..|++.|||..|.|++|+|.||
T Consensus        23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a   96 (109)
T 1x4g_A           23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWG   96 (109)
T ss_dssp             SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred             CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEec
Confidence            45779999999999999999999999999999999976      699999999999999999999999999999999999


Q ss_pred             CC
Q 026963           98 SQ   99 (230)
Q Consensus        98 ~e   99 (230)
                      .+
T Consensus        97 ~~   98 (109)
T 1x4g_A           97 KE   98 (109)
T ss_dssp             CC
T ss_pred             CC
Confidence            53

>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}

Probab=99.77  E-value=4.9e-19  Score=134.49  Aligned_cols=79  Identities=11%  Similarity=0.043  Sum_probs=75.5

Q ss_pred             cCCCCeEEEcCCCCCCCHHHHHHhhccCCc---ceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeE
Q 026963           17 CDESRYLIVRNVPSLGCGDDLLKLFATYGD---IEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLK   93 (230)
Q Consensus        17 ~~eS~~LyV~NLP~~~teedL~~LFS~fG~---I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~   93 (230)
                      .++..+|||+|||+.++++||+++|+.||.   |.+|.++.++. ++++|||||+|.+.++|..|+. |||..+.|+.|+
T Consensus         8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~   85 (107)
T 2lmi_A            8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVE   85 (107)
T ss_dssp             CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCC
T ss_pred             CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEE
Confidence            456789999999999999999999999999   99999999987 9999999999999999999999 999999999999


Q ss_pred             EEec
Q 026963           94 VSYA   97 (230)
Q Consensus        94 VsyA   97 (230)
                      |.+|
T Consensus        86 V~~a   89 (107)
T 2lmi_A           86 VYEI   89 (107)
T ss_dssp             CEEC
T ss_pred             EEEC
Confidence            9999

>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.77  E-value=3.4e-19  Score=140.26  Aligned_cols=77  Identities=22%  Similarity=0.276  Sum_probs=70.2

Q ss_pred             cCCCCeEEEcCCCCC-CCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcC--ceeCCceeE
Q 026963           17 CDESRYLIVRNVPSL-GCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDE--FVFLGNRLK   93 (230)
Q Consensus        17 ~~eS~~LyV~NLP~~-~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG--~~f~Gr~L~   93 (230)
                      ..++++|||+|||+. ++++||.++|++||+|.+|.++..      +|||||+|++.++|..|++.|||  ..|.|++|+
T Consensus        22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~   95 (112)
T 1x4f_A           22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM------KSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK   95 (112)
T ss_dssp             SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred             CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence            457899999999998 999999999999999999999753      69999999999999999999865  559999999


Q ss_pred             EEecCC
Q 026963           94 VSYASQ   99 (230)
Q Consensus        94 VsyA~e   99 (230)
                      |+||..
T Consensus        96 V~~a~~  101 (112)
T 1x4f_A           96 VDLSEK  101 (112)
T ss_dssp             EEEECS
T ss_pred             EEECcc
Confidence            999953

>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}

Probab=99.64  E-value=2e-20  Score=143.31  Aligned_cols=80  Identities=19%  Similarity=0.213  Sum_probs=77.3

Q ss_pred             CCCCeEEEcCCCCCCCHHHHHHhhccCCcceE--------EEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCC
Q 026963           18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEE--------CKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLG   89 (230)
Q Consensus        18 ~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~--------v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~G   89 (230)
                      .++++|||+|||..+++++|+++|++||+|..        |.++.++.++.++|||||+|.+.++|..|++.|||..|.|
T Consensus         5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g   84 (116)
T 2lcw_A            5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG   84 (116)
Confidence            46789999999999999999999999999999        9999999999999999999999999999999999999999


Q ss_pred             ceeEEEec
Q 026963           90 NRLKVSYA   97 (230)
Q Consensus        90 r~L~VsyA   97 (230)
                      ++|+|+||
T Consensus        85 ~~l~V~~a   92 (116)
T 2lcw_A           85 NPIKVSFA   92 (116)
Confidence            99999999

>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A

Probab=99.77  E-value=1.5e-18  Score=142.11  Aligned_cols=81  Identities=19%  Similarity=0.230  Sum_probs=77.9

Q ss_pred             CCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963           18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA   97 (230)
Q Consensus        18 ~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA   97 (230)
                      .++.+|||+|||..+++++|+++|++||+|..|.++.+..++.++|||||+|.+.++|..|++.|||..|.|++|+|+||
T Consensus       123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a  202 (216)
T 2qfj_A          123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA  202 (216)
T ss_dssp             TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEEC
T ss_pred             CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEe
Confidence            45689999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             C
Q 026963           98 S   98 (230)
Q Consensus        98 ~   98 (230)
                      .
T Consensus       203 ~  203 (216)
T 2qfj_A          203 V  203 (216)
T ss_dssp             S
T ss_pred             c
Confidence            4

>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A

Probab=99.77  E-value=5.1e-19  Score=132.06  Aligned_cols=77  Identities=18%  Similarity=0.232  Sum_probs=73.9

Q ss_pred             CCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEecC
Q 026963           19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYAS   98 (230)
Q Consensus        19 eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA~   98 (230)
                      ++++|||+|||+.+++++|+++|++||+|.+|.++.++ ++.++|||||+|.+.++|..|+.  ||..+.|+.|.|.+|.
T Consensus         8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~   84 (102)
T 2xs2_A            8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAI   84 (102)
T ss_dssp             EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECC
Confidence            45789999999999999999999999999999999998 89999999999999999999999  9999999999999994

>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}

Probab=99.77  E-value=8e-19  Score=130.47  Aligned_cols=76  Identities=22%  Similarity=0.292  Sum_probs=69.5

Q ss_pred             ccCCCCeEEEcCCCC-CCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEE
Q 026963           16 VCDESRYLIVRNVPS-LGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKV   94 (230)
Q Consensus        16 v~~eS~~LyV~NLP~-~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~V   94 (230)
                      ...++++|||+|||+ .+++++|+++|++||+|.+|.+.        +|||||+|.+.++|..|++.|||..|.|++|+|
T Consensus         6 ~~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V   77 (96)
T 2kvi_A            6 NIPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLIL   77 (96)
T ss_dssp             ---CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCE
T ss_pred             cCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence            346788999999998 99999999999999999999984        589999999999999999999999999999999


Q ss_pred             EecCC
Q 026963           95 SYASQ   99 (230)
Q Consensus        95 syA~e   99 (230)
                      .||..
T Consensus        78 ~~a~~   82 (96)
T 2kvi_A           78 EVSSS   82 (96)
T ss_dssp             EEEEC
T ss_pred             EEcCc
Confidence            99943

>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}

Probab=99.77  E-value=5.8e-19  Score=131.55  Aligned_cols=73  Identities=23%  Similarity=0.273  Sum_probs=70.0

Q ss_pred             CeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEecC
Q 026963           21 RYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYAS   98 (230)
Q Consensus        21 ~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA~   98 (230)
                      ++|||+|||+.+++++|+++|++||+|.+|.++.+     ++|||||+|.+.++|..|++.|||..|.|++|+|.||.
T Consensus         1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~   73 (101)
T 2hvz_A            1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELST   73 (101)
T ss_dssp             CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESS
T ss_pred             CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEcc
Confidence            47999999999999999999999999999999976     68999999999999999999999999999999999994

>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A

Probab=99.77  E-value=1.9e-18  Score=136.08  Aligned_cols=80  Identities=24%  Similarity=0.288  Sum_probs=76.6

Q ss_pred             CCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCC--ceeEEE
Q 026963           18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLG--NRLKVS   95 (230)
Q Consensus        18 ~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~G--r~L~Vs   95 (230)
                      .++.+|||+|||..+++++|+++|++||+|..+.++.+..++.++|+|||+|.+.++|..|++.|||..|.|  ++|+|.
T Consensus        87 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~  166 (168)
T 1b7f_A           87 IKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVR  166 (168)
T ss_dssp             TTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEE
T ss_pred             CCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEE
Confidence            356799999999999999999999999999999999998899999999999999999999999999999988  999999


Q ss_pred             ec
Q 026963           96 YA   97 (230)
Q Consensus        96 yA   97 (230)
                      ||
T Consensus       167 ~A  168 (168)
T 1b7f_A          167 LA  168 (168)
T ss_dssp             EC
T ss_pred             eC
Confidence            97

>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A

Probab=99.77  E-value=1.7e-18  Score=129.87  Aligned_cols=76  Identities=22%  Similarity=0.298  Sum_probs=70.2

Q ss_pred             eccCCCCeEEEcCCCC-CCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeE
Q 026963           15 TVCDESRYLIVRNVPS-LGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLK   93 (230)
Q Consensus        15 tv~~eS~~LyV~NLP~-~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~   93 (230)
                      ....++++|||+|||+ .+++++|+++|++||+|.+|.+.        +|||||+|.+.++|..|++.|||..|.|+.|+
T Consensus        17 ~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~   88 (97)
T 2xnq_A           17 RGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLI   88 (97)
T ss_dssp             --CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEECE
T ss_pred             CCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence            3456789999999998 99999999999999999999983        69999999999999999999999999999999


Q ss_pred             EEecC
Q 026963           94 VSYAS   98 (230)
Q Consensus        94 VsyA~   98 (230)
                      |+||.
T Consensus        89 V~~a~   93 (97)
T 2xnq_A           89 LEVSS   93 (97)
T ss_dssp             EEECC
T ss_pred             EEecC
Confidence            99994

>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.77  E-value=7.2e-19  Score=130.67  Aligned_cols=78  Identities=18%  Similarity=0.139  Sum_probs=71.2

Q ss_pred             cCCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEe
Q 026963           17 CDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSY   96 (230)
Q Consensus        17 ~~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~Vsy   96 (230)
                      ...+++|||+|||+.+++++|+++|++||+|. +.++.    +.++|||||+|.+.++|..|++.|||..|.|++|+|+|
T Consensus        16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~----~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~   90 (97)
T 2e5j_A           16 APLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTW----QGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVAL   90 (97)
T ss_dssp             SCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEE----ETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred             CCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEc----CCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence            34578999999999999999999999999997 66665    36789999999999999999999999999999999999


Q ss_pred             cCC
Q 026963           97 ASQ   99 (230)
Q Consensus        97 A~e   99 (230)
                      |.+
T Consensus        91 a~~   93 (97)
T 2e5j_A           91 ARQ   93 (97)
T ss_dssp             CCC
T ss_pred             cCC
Confidence            954

>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A

Probab=99.77  E-value=9.6e-19  Score=139.34  Aligned_cols=78  Identities=23%  Similarity=0.299  Sum_probs=73.2

Q ss_pred             cCCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEe
Q 026963           17 CDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSY   96 (230)
Q Consensus        17 ~~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~Vsy   96 (230)
                      ..++++|||+|||+.+++++|+++|++||+|.+|.++.+     ++|||||+|.+.++|..|+..|||..|.|++|+|+|
T Consensus        70 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~  144 (150)
T 2i2y_A           70 CPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVEL  144 (150)
T ss_dssp             STTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEE
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence            356789999999999999999999999999999999876     589999999999999999999999999999999999


Q ss_pred             cCC
Q 026963           97 ASQ   99 (230)
Q Consensus        97 A~e   99 (230)
                      |.+
T Consensus       145 a~~  147 (150)
T 2i2y_A          145 SNG  147 (150)
T ss_dssp             CCC
T ss_pred             cCC
Confidence            953

>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1

Probab=99.77  E-value=4.6e-19  Score=130.71  Aligned_cols=77  Identities=16%  Similarity=0.201  Sum_probs=71.1

Q ss_pred             CCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963           18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA   97 (230)
Q Consensus        18 ~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA   97 (230)
                      .++++|||+|||+.+++++|+++|++||.|..+     ..++.++|||||+|.+.++|..|++.|||..+.|++|+|.||
T Consensus        14 ~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a   88 (96)
T 1fjc_A           14 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYT   88 (96)
T ss_dssp             TGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEEC
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence            357899999999999999999999999999876     345889999999999999999999999999999999999999


Q ss_pred             CC
Q 026963           98 SQ   99 (230)
Q Consensus        98 ~e   99 (230)
                      .+
T Consensus        89 ~~   90 (96)
T 1fjc_A           89 GE   90 (96)
T ss_dssp             SS
T ss_pred             CC
Confidence            53

>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A

Probab=99.77  E-value=1.3e-18  Score=130.62  Aligned_cols=74  Identities=24%  Similarity=0.372  Sum_probs=69.7

Q ss_pred             cCCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEe
Q 026963           17 CDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSY   96 (230)
Q Consensus        17 ~~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~Vsy   96 (230)
                      ..++++|||+|||+.+++++|+++|++||+|.+|.++        +|||||+|.+.++|..|++.|||..|.|++|+|.|
T Consensus         8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~   79 (103)
T 2dgu_A            8 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVF   79 (103)
T ss_dssp             CCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEE
Confidence            3567899999999999999999999999999999987        36999999999999999999999999999999999


Q ss_pred             cC
Q 026963           97 AS   98 (230)
Q Consensus        97 A~   98 (230)
                      |.
T Consensus        80 a~   81 (103)
T 2dgu_A           80 AK   81 (103)
T ss_dssp             CC
T ss_pred             cC
Confidence            94

>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A

Probab=99.77  E-value=1.8e-18  Score=139.85  Aligned_cols=82  Identities=16%  Similarity=0.214  Sum_probs=78.7

Q ss_pred             CCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963           18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA   97 (230)
Q Consensus        18 ~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA   97 (230)
                      .++.+|||+|||+.+++++|+++|++||+|.+|.++.++.++.++|||||+|.+.++|..|++.|||..|.|++|+|+||
T Consensus       112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a  191 (198)
T 2yh0_A          112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA  191 (198)
T ss_dssp             CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEES
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence            56789999999999999999999999999999999999889999999999999999999999999999999999999999


Q ss_pred             CC
Q 026963           98 SQ   99 (230)
Q Consensus        98 ~e   99 (230)
                      .+
T Consensus       192 ~~  193 (198)
T 2yh0_A          192 SV  193 (198)
T ss_dssp             CC
T ss_pred             CC
Confidence            54

>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.77  E-value=2.4e-18  Score=126.50  Aligned_cols=73  Identities=29%  Similarity=0.425  Sum_probs=69.2

Q ss_pred             CCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963           18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA   97 (230)
Q Consensus        18 ~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA   97 (230)
                      .++++|||+|||+.+++++|+++|++||+|.+|.+++        |||||+|.+.++|..|++.|||..|.|++|+|+||
T Consensus         8 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a   79 (92)
T 2dgt_A            8 KASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK--------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLS   79 (92)
T ss_dssp             CSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS--------SEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEES
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence            4678999999999999999999999999999999974        49999999999999999999999999999999999


Q ss_pred             C
Q 026963           98 S   98 (230)
Q Consensus        98 ~   98 (230)
                      .
T Consensus        80 ~   80 (92)
T 2dgt_A           80 T   80 (92)
T ss_dssp             S
T ss_pred             c
Confidence            4

>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*

Probab=99.77  E-value=1.8e-18  Score=144.78  Aligned_cols=77  Identities=18%  Similarity=0.267  Sum_probs=73.2

Q ss_pred             CCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963           19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA   97 (230)
Q Consensus        19 eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA   97 (230)
                      ...+|||+|||+.+++++|+++|++||.|++|.|+.|.  +.++|||||+|.+.++|..|++.|||..|.|++|+|.||
T Consensus       102 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a  178 (213)
T 4f02_A          102 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRF  178 (213)
T ss_dssp             CTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred             ccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC--CCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence            45789999999999999999999999999999999875  458999999999999999999999999999999999999

>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C

Probab=99.77  E-value=8.2e-19  Score=138.33  Aligned_cols=80  Identities=11%  Similarity=0.157  Sum_probs=76.3

Q ss_pred             CCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEecC
Q 026963           19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYAS   98 (230)
Q Consensus        19 eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA~   98 (230)
                      ++.+|||+|||..+++++|+++|++||+|.+|.++.++.++.++|||||+|.+.++|..|++ +||..|.|++|+|.||.
T Consensus        86 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~  164 (167)
T 2cjk_A           86 KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAE  164 (167)
T ss_dssp             HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECC
T ss_pred             CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecC
Confidence            46789999999999999999999999999999999999899999999999999999999998 89999999999999994


Q ss_pred             C
Q 026963           99 Q   99 (230)
Q Consensus        99 e   99 (230)
                      +
T Consensus       165 p  165 (167)
T 2cjk_A          165 P  165 (167)
T ss_dssp             C
T ss_pred             C
Confidence            3

>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A

Probab=99.76  E-value=1.6e-18  Score=139.75  Aligned_cols=78  Identities=10%  Similarity=0.081  Sum_probs=74.9

Q ss_pred             CCCCeEEEcCCCCCCCHHHHHHhhccCCc---ceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEE
Q 026963           18 DESRYLIVRNVPSLGCGDDLLKLFATYGD---IEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKV   94 (230)
Q Consensus        18 ~eS~~LyV~NLP~~~teedL~~LFS~fG~---I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~V   94 (230)
                      .++.+|||+|||+.++++||+++|++||.   |.+|.++.|+. ++++|||||+|.+.++|..|++ |||..|.|+.|.|
T Consensus        42 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V  119 (136)
T 2hgl_A           42 GEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEV  119 (136)
T ss_dssp             CTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEE
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEE
Confidence            45678999999999999999999999999   89999999987 9999999999999999999999 9999999999999


Q ss_pred             Eec
Q 026963           95 SYA   97 (230)
Q Consensus        95 syA   97 (230)
                      .+|
T Consensus       120 ~~a  122 (136)
T 2hgl_A          120 FKS  122 (136)
T ss_dssp             EEC
T ss_pred             EEC
Confidence            999

>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}

Probab=99.76  E-value=1.2e-18  Score=144.86  Aligned_cols=80  Identities=15%  Similarity=0.185  Sum_probs=76.8

Q ss_pred             CCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963           18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA   97 (230)
Q Consensus        18 ~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA   97 (230)
                      .++.+|||+|||+.+++++|+++|++||+|.+|.++.+. ++.++|||||+|.+.++|..|++.|||..|.|++|+|+||
T Consensus        86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a  164 (177)
T 2f3j_A           86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV  164 (177)
T ss_dssp             TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEE
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence            456799999999999999999999999999999999998 8999999999999999999999999999999999999999


Q ss_pred             C
Q 026963           98 S   98 (230)
Q Consensus        98 ~   98 (230)
                      .
T Consensus       165 ~  165 (177)
T 2f3j_A          165 A  165 (177)
T ss_dssp             S
T ss_pred             c
Confidence            4

>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A

Probab=99.76  E-value=2e-18  Score=132.20  Aligned_cols=74  Identities=23%  Similarity=0.318  Sum_probs=70.3

Q ss_pred             cCCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEe
Q 026963           17 CDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSY   96 (230)
Q Consensus        17 ~~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~Vsy   96 (230)
                      ..++++|||+|||..+++++|+++|++||+|.+|.++        +|||||+|.+.++|..|++.|||..|.|++|+|+|
T Consensus        28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~   99 (108)
T 2jvo_A           28 ELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVY   99 (108)
T ss_dssp             CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEES
T ss_pred             CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence            3467899999999999999999999999999999998        58999999999999999999999999999999999


Q ss_pred             cC
Q 026963           97 AS   98 (230)
Q Consensus        97 A~   98 (230)
                      |.
T Consensus       100 a~  101 (108)
T 2jvo_A          100 SK  101 (108)
T ss_dssp             CS
T ss_pred             ec
Confidence            94

>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.76  E-value=1.1e-18  Score=128.76  Aligned_cols=78  Identities=28%  Similarity=0.354  Sum_probs=71.3

Q ss_pred             CCCeEEEcCCCCCCCHHHHHHhhccCCcceEE-EeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963           19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEEC-KPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA   97 (230)
Q Consensus        19 eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v-~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA   97 (230)
                      .+.+|||+|||+.+++++|+++|++||+|.+| .++.++.+    |.|||+|.+.++|..|++.|||..|.|++|+|.||
T Consensus        14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~----~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a   89 (96)
T 2e44_A           14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSET----AVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYI   89 (96)
T ss_dssp             SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSS----EEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred             CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCC----CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence            46799999999999999999999999999999 58887654    44999999999999999999999999999999999


Q ss_pred             CCC
Q 026963           98 SQF  100 (230)
Q Consensus        98 ~e~  100 (230)
                      .+.
T Consensus        90 ~~~   92 (96)
T 2e44_A           90 PDE   92 (96)
T ss_dssp             CCC
T ss_pred             Ccc
Confidence            643

>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A

Probab=99.76  E-value=3.2e-18  Score=138.22  Aligned_cols=79  Identities=16%  Similarity=0.162  Sum_probs=75.7

Q ss_pred             CCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEecC
Q 026963           19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYAS   98 (230)
Q Consensus        19 eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA~   98 (230)
                      ++.+|||+|||+.+++++|+++|++||+|..|.++.+..++.++|||||+|.+.++|..|+.. +|..|.|+.|.|.||.
T Consensus       103 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a~  181 (196)
T 1l3k_A          103 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKAL  181 (196)
T ss_dssp             CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEECC
T ss_pred             CcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEecC
Confidence            457999999999999999999999999999999999998999999999999999999999987 8999999999999993

>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A

Probab=99.76  E-value=3.1e-18  Score=133.97  Aligned_cols=79  Identities=24%  Similarity=0.275  Sum_probs=75.4

Q ss_pred             CCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCc--eeEEEe
Q 026963           19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGN--RLKVSY   96 (230)
Q Consensus        19 eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr--~L~Vsy   96 (230)
                      ++.+|||+|||..+++++|+++|++||+|..+.++.+..++.++|+|||+|.+.++|..|++.|||..|.|+  +|+|+|
T Consensus        87 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~  166 (167)
T 1fxl_A           87 RDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKF  166 (167)
T ss_dssp             TTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEE
T ss_pred             CCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEEe
Confidence            567899999999999999999999999999999999988999999999999999999999999999999996  499999


Q ss_pred             c
Q 026963           97 A   97 (230)
Q Consensus        97 A   97 (230)
                      |
T Consensus       167 A  167 (167)
T 1fxl_A          167 A  167 (167)
T ss_dssp             C
T ss_pred             C
Confidence            7

>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.76  E-value=3e-18  Score=125.47  Aligned_cols=75  Identities=23%  Similarity=0.377  Sum_probs=70.0

Q ss_pred             cCCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEe
Q 026963           17 CDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSY   96 (230)
Q Consensus        17 ~~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~Vsy   96 (230)
                      ..++++|||+|||+.+++++|+++|++||+|.+|.+++        |||||+|.+.++|..|++.|||..|.|++|+|.|
T Consensus         6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~   77 (90)
T 2dnp_A            6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK--------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVEL   77 (90)
T ss_dssp             SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence            34678999999999999999999999999999999984        4999999999999999999999999999999999


Q ss_pred             cCC
Q 026963           97 ASQ   99 (230)
Q Consensus        97 A~e   99 (230)
                      |.+
T Consensus        78 a~~   80 (90)
T 2dnp_A           78 STK   80 (90)
T ss_dssp             SCC
T ss_pred             CCC
Confidence            943

>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A

Probab=99.76  E-value=1.7e-18  Score=126.76  Aligned_cols=74  Identities=20%  Similarity=0.300  Sum_probs=69.8

Q ss_pred             CCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEecC
Q 026963           19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYAS   98 (230)
Q Consensus        19 eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA~   98 (230)
                      .+++|||+|||+.+++++|+++|++| +|.+|.+.      +++|||||+|.+.++|..|++.|||..+.|++|+|.||+
T Consensus         4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~   76 (88)
T 1wg1_A            4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQP   76 (88)
T ss_dssp             CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcC
Confidence            46789999999999999999999999 99999984      578999999999999999999999999999999999996


Q ss_pred             C
Q 026963           99 Q   99 (230)
Q Consensus        99 e   99 (230)
                      .
T Consensus        77 ~   77 (88)
T 1wg1_A           77 T   77 (88)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.75  E-value=1.5e-18  Score=134.61  Aligned_cols=72  Identities=22%  Similarity=0.324  Sum_probs=65.1

Q ss_pred             CCCCe-EEEcCCCCCCCHHH----HHHhhccC-CcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCce
Q 026963           18 DESRY-LIVRNVPSLGCGDD----LLKLFATY-GDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNR   91 (230)
Q Consensus        18 ~eS~~-LyV~NLP~~~teed----L~~LFS~f-G~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~   91 (230)
                      .|+.+ |||+|||+.+++++    |+++|++| |+|.+|       |+   |||||.|.++++|..|++.|||..|+|++
T Consensus         6 ~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~   75 (96)
T 2diu_A            6 SGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNR   75 (96)
T ss_dssp             CCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSC
T ss_pred             CCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCce
Confidence            35776 99999999999877    66999999 599988       34   99999999999999999999999999999


Q ss_pred             eEEEecCC
Q 026963           92 LKVSYASQ   99 (230)
Q Consensus        92 L~VsyA~e   99 (230)
                      |+|+||+.
T Consensus        76 i~v~~A~~   83 (96)
T 2diu_A           76 IIVSFTPK   83 (96)
T ss_dssp             CEEESSCC
T ss_pred             EEEEecCC
Confidence            99999953

>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A

Probab=99.75  E-value=1.8e-18  Score=135.05  Aligned_cols=76  Identities=16%  Similarity=0.125  Sum_probs=70.7

Q ss_pred             CCCeEEEcCCCCCCCHHHHHHhhccCC-cceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963           19 ESRYLIVRNVPSLGCGDDLLKLFATYG-DIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA   97 (230)
Q Consensus        19 eS~~LyV~NLP~~~teedL~~LFS~fG-~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA   97 (230)
                      ...+|||+|||+.+++++|+++|++|| +|..|.+..+    .++|||||+|.+.++|..|++.|||..|.|++|+|.+|
T Consensus        27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~----~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a  102 (111)
T 2jvr_A           27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR----DFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERD  102 (111)
T ss_dssp             CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC----SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEES
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC----CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence            456899999999999999999999999 9999998643    47899999999999999999999999999999999999


Q ss_pred             C
Q 026963           98 S   98 (230)
Q Consensus        98 ~   98 (230)
                      .
T Consensus       103 ~  103 (111)
T 2jvr_A          103 D  103 (111)
T ss_dssp             C
T ss_pred             C
Confidence            4

>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A

Probab=99.75  E-value=2.2e-18  Score=130.70  Aligned_cols=72  Identities=19%  Similarity=0.315  Sum_probs=68.6

Q ss_pred             CCCeEEEcCCCCC-CCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963           19 ESRYLIVRNVPSL-GCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA   97 (230)
Q Consensus        19 eS~~LyV~NLP~~-~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA   97 (230)
                      .+++|||+|||+. +++++|+++|++||+|.+|.+        ++|||||+|.+.++|..|++.|||..|.|++|+|+||
T Consensus        26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a   97 (110)
T 1wf1_A           26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMA   97 (110)
T ss_dssp             CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEES
T ss_pred             CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence            4579999999999 999999999999999999998        4699999999999999999999999999999999999


Q ss_pred             C
Q 026963           98 S   98 (230)
Q Consensus        98 ~   98 (230)
                      .
T Consensus        98 ~   98 (110)
T 1wf1_A           98 G   98 (110)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A

Probab=99.75  E-value=4.6e-19  Score=152.33  Aligned_cols=78  Identities=21%  Similarity=0.335  Sum_probs=73.4

Q ss_pred             CCCCeEEEcCCCCCCCHHHHH----HhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeE
Q 026963           18 DESRYLIVRNVPSLGCGDDLL----KLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLK   93 (230)
Q Consensus        18 ~eS~~LyV~NLP~~~teedL~----~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~   93 (230)
                      .++++|||+|||+.+++++|+    ++|++||+|.+|.++.   +++++|||||+|.+.++|..|++.|||..|.|++|+
T Consensus         7 ~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~   83 (282)
T 3pgw_A            7 RPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR   83 (282)
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEE
Confidence            468899999999999999965    9999999999999986   588999999999999999999999999999999999


Q ss_pred             EEecC
Q 026963           94 VSYAS   98 (230)
Q Consensus        94 VsyA~   98 (230)
                      |.||.
T Consensus        84 v~~a~   88 (282)
T 3pgw_A           84 IQYAK   88 (282)
T ss_pred             EEEec
Confidence            99994

>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.75  E-value=5.2e-18  Score=126.17  Aligned_cols=75  Identities=25%  Similarity=0.316  Sum_probs=69.8

Q ss_pred             ccCCCCeEEEcCCCCCCCHHHHHHhhccC--CcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeE
Q 026963           16 VCDESRYLIVRNVPSLGCGDDLLKLFATY--GDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLK   93 (230)
Q Consensus        16 v~~eS~~LyV~NLP~~~teedL~~LFS~f--G~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~   93 (230)
                      ...++++|||+|||+.+++++|+++|++|  |.|..|.++        +|||||+|.+.++|..|+..|||..|.|++|+
T Consensus        11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~   82 (99)
T 2cpd_A           11 TMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIE   82 (99)
T ss_dssp             CSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEE
T ss_pred             ccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEE
Confidence            34578899999999999999999999999  999999875        57999999999999999999999999999999


Q ss_pred             EEecC
Q 026963           94 VSYAS   98 (230)
Q Consensus        94 VsyA~   98 (230)
                      |.||.
T Consensus        83 v~~a~   87 (99)
T 2cpd_A           83 VTLAK   87 (99)
T ss_dssp             EECCC
T ss_pred             EEECC
Confidence            99994

>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A

Probab=99.75  E-value=4.1e-18  Score=134.60  Aligned_cols=78  Identities=21%  Similarity=0.361  Sum_probs=73.6

Q ss_pred             CCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCC---ceeEEE
Q 026963           19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLG---NRLKVS   95 (230)
Q Consensus        19 eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~G---r~L~Vs   95 (230)
                      ++.+|||+|||..+++++|+++|++||+|.+|.++.+. ++.++|||||+|.+.++|..|++.|||..+.+   ++|+|+
T Consensus        94 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~  172 (175)
T 3nmr_A           94 EDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVK  172 (175)
T ss_dssp             GGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEE
T ss_pred             CCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEE
Confidence            56799999999999999999999999999999999985 58999999999999999999999999998874   999999


Q ss_pred             ec
Q 026963           96 YA   97 (230)
Q Consensus        96 yA   97 (230)
                      ||
T Consensus       173 ~a  174 (175)
T 3nmr_A          173 FA  174 (175)
T ss_dssp             EC
T ss_pred             ec
Confidence            98

>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.75  E-value=4.1e-18  Score=125.90  Aligned_cols=76  Identities=16%  Similarity=0.186  Sum_probs=69.2

Q ss_pred             CCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963           18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA   97 (230)
Q Consensus        18 ~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA   97 (230)
                      .++++|||+|||+.+++++|+++|++||+|.+|  +.++.++.   ||||+|.+.++|..|+. |||..|.|+.|+|.+|
T Consensus         6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a   79 (94)
T 2e5g_A            6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPR   79 (94)
T ss_dssp             TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCS
T ss_pred             CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEEC
Confidence            456799999999999999999999999999998  55666665   99999999999999999 9999999999999999


Q ss_pred             CC
Q 026963           98 SQ   99 (230)
Q Consensus        98 ~e   99 (230)
                      .+
T Consensus        80 ~~   81 (94)
T 2e5g_A           80 EQ   81 (94)
T ss_dssp             CC
T ss_pred             Cc
Confidence            53

>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.74  E-value=2.1e-18  Score=126.70  Aligned_cols=74  Identities=19%  Similarity=0.184  Sum_probs=67.8

Q ss_pred             CCCCeEEEcCCCCCCCHHHHHHhhccCCc-ceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcC-ceeCCceeEEE
Q 026963           18 DESRYLIVRNVPSLGCGDDLLKLFATYGD-IEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDE-FVFLGNRLKVS   95 (230)
Q Consensus        18 ~eS~~LyV~NLP~~~teedL~~LFS~fG~-I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG-~~f~Gr~L~Vs   95 (230)
                      .++++|||+|||+.+++++|+++|++||+ |..+.+.       ++|||||+|.+.++|..|++.||| ..|.|++|+|.
T Consensus         6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~   78 (93)
T 2cqh_A            6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVD   78 (93)
T ss_dssp             CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEE
T ss_pred             CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEE
Confidence            46789999999999999999999999999 6666653       469999999999999999999999 99999999999


Q ss_pred             ecC
Q 026963           96 YAS   98 (230)
Q Consensus        96 yA~   98 (230)
                      ||.
T Consensus        79 ~a~   81 (93)
T 2cqh_A           79 YSV   81 (93)
T ss_dssp             ECC
T ss_pred             Ecc
Confidence            994

>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.74  E-value=3.6e-18  Score=135.47  Aligned_cols=79  Identities=15%  Similarity=0.106  Sum_probs=73.7

Q ss_pred             cCCCCeEEEcCCCCCCCHHHHHHhhccCCcc----eEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCcee
Q 026963           17 CDESRYLIVRNVPSLGCGDDLLKLFATYGDI----EECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRL   92 (230)
Q Consensus        17 ~~eS~~LyV~NLP~~~teedL~~LFS~fG~I----~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L   92 (230)
                      ..++.+|||+|||+.++++||+++|++||+|    .+|.|+.+ .+++++|||||+|.+.++|..|++. ||..|.|+.|
T Consensus        20 ~~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d-~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i   97 (123)
T 2dha_A           20 KENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTY-PDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYI   97 (123)
T ss_dssp             CCSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEEC-TTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEE
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEEC-CCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEE
Confidence            3567899999999999999999999999985    68999998 4899999999999999999999997 9999999999


Q ss_pred             EEEec
Q 026963           93 KVSYA   97 (230)
Q Consensus        93 ~VsyA   97 (230)
                      .|..|
T Consensus        98 ~V~~a  102 (123)
T 2dha_A           98 ELFRS  102 (123)
T ss_dssp             CCEEE
T ss_pred             EEEEC
Confidence            99999

>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E

Probab=99.74  E-value=5.2e-19  Score=152.16  Aligned_cols=160  Identities=14%  Similarity=0.073  Sum_probs=119.8

Q ss_pred             cCCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEe
Q 026963           17 CDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSY   96 (230)
Q Consensus        17 ~~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~Vsy   96 (230)
                      ..++.+|||+|||+.+++++|.++|++||+|.+|.++.+..++.++|||||+|.+.++|..|++.|||..+.|++|.|.|
T Consensus        92 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~  171 (284)
T 3smz_A           92 QPTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHW  171 (284)
T ss_dssp             CCCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred             cCCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCChHHHHHHHHHHHHHHHHHhh-cCCCCC-CCcccccc-cCCCCCCCCCCCCcchhhhhhhhcccccccccccccC
Q 026963           97 ASQFESLADTKDKLETRRKEVLARLN-SGRSKV-PNIHSSVD-LGEPSLVTAPLQPNLVSEQITSWQRASSESQRISHVN  173 (230)
Q Consensus        97 A~e~Es~~d~r~Kl~~rr~ev~~Rl~-~n~~~~-~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (230)
                      |.......+..   .      ...+- .|+|.. +++.+.++ +..+|   .+.++.++... +...++ .+|..|....
T Consensus       172 a~~~~~~~~~~---~------~~~l~v~nlp~~~~~~~~l~~~f~~~G---~i~~v~i~~~~-~g~~~g-~afV~f~~~~  237 (284)
T 3smz_A          172 TDAGQLTPALL---H------SRCLCVDRLPPGFNDVDALCRALSAVH---SPTFCQLACGQ-DGQLKG-FAVLEYETAE  237 (284)
T ss_dssp             CCGGGCCTTTT---S------CSEEEEECCCTTCCCHHHHHHHTCSSS---CCSEEEEEECS-SCCEEE-EEEEECSSHH
T ss_pred             CCCCCCCcccC---C------ccEEEEecCCcccCCHHHHHHHhhCCC---CeEEEEEEECC-CCCccc-EEEEEeCCHH
Confidence            94322111000   0      01111 467777 46666655 77777   34334443333 344556 6788887777


Q ss_pred             CCCceeeccCccccccc
Q 026963          174 ESPITRVSSDKDYFASQ  190 (230)
Q Consensus       174 ~~~~~~~~~~~~~~~~~  190 (230)
                      +|..+.-.+|..+|.+.
T Consensus       238 ~A~~A~~~l~g~~~~g~  254 (284)
T 3smz_A          238 MAEEAQQQADGLSLGGS  254 (284)
T ss_dssp             HHHHHHHHHTTCEETTE
T ss_pred             HHHHHHHHhCCCccCCe
Confidence            77777666777766543

>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A

Probab=99.74  E-value=5e-18  Score=143.50  Aligned_cols=76  Identities=20%  Similarity=0.284  Sum_probs=71.7

Q ss_pred             CCCCeEEEcCCC-CCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEe
Q 026963           18 DESRYLIVRNVP-SLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSY   96 (230)
Q Consensus        18 ~eS~~LyV~NLP-~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~Vsy   96 (230)
                      .++.+|||+||| +.+++++|+++|++||.|.+|+++.+     .+|||||+|.+.++|..|++.|||..|.|++|+|.|
T Consensus         2 ~~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~   76 (205)
T 3tyt_A            2 ADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCV   76 (205)
T ss_dssp             CCCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred             CCCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEE
Confidence            468899999999 79999999999999999999999876     379999999999999999999999999999999999


Q ss_pred             cC
Q 026963           97 AS   98 (230)
Q Consensus        97 A~   98 (230)
                      |.
T Consensus        77 s~   78 (205)
T 3tyt_A           77 SK   78 (205)
T ss_dssp             CS
T ss_pred             cc
Confidence            94

>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.74  E-value=3.1e-18  Score=135.45  Aligned_cols=78  Identities=15%  Similarity=0.155  Sum_probs=71.0

Q ss_pred             eccCCCCeEEE--cCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCcee-----
Q 026963           15 TVCDESRYLIV--RNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVF-----   87 (230)
Q Consensus        15 tv~~eS~~LyV--~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f-----   87 (230)
                      ....++++|||  +|||+.+++++|+++|++||+|.+|.++.+      +|||||+|.+.++|..|++.|||+.+     
T Consensus        20 ~~~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~------rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg   93 (114)
T 2cq2_A           20 TVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN------KPYSFARYRTTEESKRAYVTLNGKEVVDDLG   93 (114)
T ss_dssp             CCSSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT------CSCEEEEESSHHHHHHHHHHTTTCEEECTTS
T ss_pred             CCCCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHhCCCEEccccC
Confidence            34567889999  669999999999999999999999998753      69999999999999999999999999     


Q ss_pred             CCceeEEEecC
Q 026963           88 LGNRLKVSYAS   98 (230)
Q Consensus        88 ~Gr~L~VsyA~   98 (230)
                      .|++|.|+||.
T Consensus        94 ~g~~l~v~~a~  104 (114)
T 2cq2_A           94 QKITLYLNFVE  104 (114)
T ss_dssp             CEEECEEEEES
T ss_pred             CCcEEEEEecc
Confidence            78999999994

>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A

Probab=99.73  E-value=1.1e-17  Score=135.10  Aligned_cols=75  Identities=19%  Similarity=0.243  Sum_probs=68.3

Q ss_pred             CCC--eEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeE-EEEEEccHhHHHHHHHHhcCceeCC--ceeE
Q 026963           19 ESR--YLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDV-YFIKFRLFSNARFAKRKLDEFVFLG--NRLK   93 (230)
Q Consensus        19 eS~--~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~-AFV~F~d~edA~~A~~~LnG~~f~G--r~L~   93 (230)
                      +++  .|||+|||+.+++++|+++|++||+|.+|.+..+     .+|| |||+|.+.++|..|++.|||..|+|  ++|+
T Consensus        25 ps~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~Lr   99 (130)
T 3zzy_A           25 QSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLR   99 (130)
T ss_dssp             CCSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEE
T ss_pred             CCceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEE
Confidence            454  5779999999999999999999999999998864     2577 9999999999999999999999999  8999


Q ss_pred             EEecC
Q 026963           94 VSYAS   98 (230)
Q Consensus        94 VsyA~   98 (230)
                      |+||+
T Consensus       100 I~~ak  104 (130)
T 3zzy_A          100 IDFSK  104 (130)
T ss_dssp             EEECS
T ss_pred             EEecC
Confidence            99994

>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.73  E-value=1.8e-17  Score=123.06  Aligned_cols=74  Identities=20%  Similarity=0.192  Sum_probs=68.3

Q ss_pred             CCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963           18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA   97 (230)
Q Consensus        18 ~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA   97 (230)
                      .++++|||+||  .+++++|+++|++||+|.+|.+.      .++|||||.|.+.++|..|++.|||..|.|++|+|.||
T Consensus        13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a   84 (97)
T 1x5p_A           13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA   84 (97)
T ss_dssp             CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECC
T ss_pred             CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEC
Confidence            46789999996  68999999999999999999985      46799999999999999999999999999999999999


Q ss_pred             CC
Q 026963           98 SQ   99 (230)
Q Consensus        98 ~e   99 (230)
                      .+
T Consensus        85 ~~   86 (97)
T 1x5p_A           85 RK   86 (97)
T ss_dssp             SS
T ss_pred             CC
Confidence            43

>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.73  E-value=1.1e-17  Score=129.82  Aligned_cols=76  Identities=16%  Similarity=0.201  Sum_probs=72.3

Q ss_pred             CCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963           19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA   97 (230)
Q Consensus        19 eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA   97 (230)
                      ++.+|||+|||+.++++||+++|++| .|.+|.|+.|+. ++++|||||+|.+.++|..|+ .|||..|.|+.|.|..|
T Consensus        15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a   90 (109)
T 2dnn_A           15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPA   90 (109)
T ss_dssp             HHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEEC
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEEC
Confidence            45689999999999999999999999 899999999976 999999999999999999999 79999999999999988

>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*

Probab=99.73  E-value=8.3e-18  Score=157.80  Aligned_cols=81  Identities=20%  Similarity=0.197  Sum_probs=77.9

Q ss_pred             CCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963           18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA   97 (230)
Q Consensus        18 ~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA   97 (230)
                      .++.+|||+|||+.+++++|.++|++||+|+.|.|+.+..|+.++|||||+|.+.++|..|+..|||..|.|++|.|.||
T Consensus       100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a  179 (437)
T 3pgw_S          100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE  179 (437)
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence            35579999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             C
Q 026963           98 S   98 (230)
Q Consensus        98 ~   98 (230)
                      .
T Consensus       180 ~  180 (437)
T 3pgw_S          180 R  180 (437)
T ss_pred             C
Confidence            4

>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.72  E-value=9.9e-18  Score=128.58  Aligned_cols=79  Identities=15%  Similarity=0.079  Sum_probs=71.3

Q ss_pred             CCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCC---CCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEE
Q 026963           18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDC---DPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKV   94 (230)
Q Consensus        18 ~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~t---gksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~V   94 (230)
                      ..+++|||+|||+.+++++|+++|++||+|. +.++.+..+   |+++|||||+|.+.++|..|++.|+  .+.|+.|.+
T Consensus         6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~   82 (114)
T 2dnl_A            6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLC   82 (114)
T ss_dssp             SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEE
T ss_pred             CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEe
Confidence            4578999999999999999999999999999 888888877   7999999999999999999999995  478888888


Q ss_pred             EecCC
Q 026963           95 SYASQ   99 (230)
Q Consensus        95 syA~e   99 (230)
                      ..++.
T Consensus        83 ~~~~~   87 (114)
T 2dnl_A           83 VSSPT   87 (114)
T ss_dssp             ECCSS
T ss_pred             ccCCC
Confidence            77743

>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A

Probab=99.72  E-value=3.5e-18  Score=138.34  Aligned_cols=81  Identities=14%  Similarity=0.108  Sum_probs=74.6

Q ss_pred             CCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963           18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA   97 (230)
Q Consensus        18 ~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA   97 (230)
                      .+..+|||+|||+.++++||+++|++|| |++|.|+.|++ ++++|||||+|.+.++|..|+ .+||..|.|+.|+|.++
T Consensus        44 ~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a  120 (139)
T 2hgn_A           44 TTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLN  120 (139)
T ss_dssp             -CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEEC
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEEC
Confidence            4567999999999999999999999999 77999999976 999999999999999999999 89999999999999999


Q ss_pred             CCCC
Q 026963           98 SQFE  101 (230)
Q Consensus        98 ~e~E  101 (230)
                      ...+
T Consensus       121 ~~~~  124 (139)
T 2hgn_A          121 STTG  124 (139)
T ss_dssp             CCSC
T ss_pred             CCCC
Confidence            5443

>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E

Probab=99.72  E-value=3.4e-17  Score=140.83  Aligned_cols=81  Identities=19%  Similarity=0.203  Sum_probs=75.9

Q ss_pred             CCCeEEEcCCCCCC-CHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963           19 ESRYLIVRNVPSLG-CGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA   97 (230)
Q Consensus        19 eS~~LyV~NLP~~~-teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA   97 (230)
                      ++.+|||+|||+.+ ++++|+++|++||+|.+|.++.+. +|.++|+|||.|.+.++|..|+..|||..|.|++|+|+||
T Consensus       183 ~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a  261 (284)
T 3smz_A          183 HSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFC  261 (284)
T ss_dssp             SCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS-SCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred             CccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC-CCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEEe
Confidence            56799999999985 899999999999999999999986 6999999999999999999999999999999999999999


Q ss_pred             CCC
Q 026963           98 SQF  100 (230)
Q Consensus        98 ~e~  100 (230)
                      .+.
T Consensus       262 ~~~  264 (284)
T 3smz_A          262 APG  264 (284)
T ss_dssp             CSS
T ss_pred             cCC
Confidence            543

>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}

Probab=99.71  E-value=2.8e-17  Score=121.86  Aligned_cols=72  Identities=18%  Similarity=0.253  Sum_probs=63.8

Q ss_pred             CCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeC--CceeEEE
Q 026963           18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFL--GNRLKVS   95 (230)
Q Consensus        18 ~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~--Gr~L~Vs   95 (230)
                      .+..+|||+|||+.+++++|+++|++||+|.+|.++.+     ++|||||+|.+.++|.    .|+|..+.  |+.|.|.
T Consensus         9 ~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~----~~~~~~~~~~g~~v~v~   79 (89)
T 3d2w_A            9 HHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQ----SLCGEDLIIKGISVHIS   79 (89)
T ss_dssp             --CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHH----HHTTCEEEETTEEEEEE
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHH----HHcCCCcccCCEEEEEE
Confidence            35679999999999999999999999999999999874     7899999999999998    46777765  8999999


Q ss_pred             ecC
Q 026963           96 YAS   98 (230)
Q Consensus        96 yA~   98 (230)
                      +|.
T Consensus        80 ~a~   82 (89)
T 3d2w_A           80 NAE   82 (89)
T ss_dssp             ECC
T ss_pred             EcC
Confidence            994

>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A

Probab=99.71  E-value=2.1e-17  Score=138.43  Aligned_cols=78  Identities=18%  Similarity=0.201  Sum_probs=70.2

Q ss_pred             cCCCC--eEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCC--cee
Q 026963           17 CDESR--YLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLG--NRL   92 (230)
Q Consensus        17 ~~eS~--~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~G--r~L   92 (230)
                      +.+++  +|||+|||+.+++++|+++|++||+|++|.+..+    .++|||||+|.+.++|..|++.|||..|+|  ++|
T Consensus        41 ~~ps~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L  116 (164)
T 1sjr_A           41 AGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTL  116 (164)
T ss_dssp             CCCCCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCE
T ss_pred             CCCCceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEE
Confidence            33454  5899999999999999999999999999999754    357999999999999999999999999977  999


Q ss_pred             EEEecC
Q 026963           93 KVSYAS   98 (230)
Q Consensus        93 ~VsyA~   98 (230)
                      +|+||.
T Consensus       117 ~V~~Ak  122 (164)
T 1sjr_A          117 RIDFSK  122 (164)
T ss_dssp             EEEECS
T ss_pred             EEEEec
Confidence            999994

>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.71  E-value=3e-17  Score=131.03  Aligned_cols=75  Identities=19%  Similarity=0.198  Sum_probs=67.3

Q ss_pred             CCCCe--EEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeE-EEEEEccHhHHHHHHHHhcCceeCC--cee
Q 026963           18 DESRY--LIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDV-YFIKFRLFSNARFAKRKLDEFVFLG--NRL   92 (230)
Q Consensus        18 ~eS~~--LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~-AFV~F~d~edA~~A~~~LnG~~f~G--r~L   92 (230)
                      .+++.  |||+|||+.+++++|+++|++||+|.+|.+...      .|| |||+|.+.++|..|++.|||..|+|  ++|
T Consensus        21 ~ps~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l   94 (124)
T 2e5i_A           21 GGNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTL   94 (124)
T ss_dssp             CCCSEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEE
T ss_pred             CCCcEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEE
Confidence            35654  679999999999999999999999999999752      286 9999999999999999999999998  599


Q ss_pred             EEEecC
Q 026963           93 KVSYAS   98 (230)
Q Consensus        93 ~VsyA~   98 (230)
                      +|+||.
T Consensus        95 ~V~~Ak  100 (124)
T 2e5i_A           95 KIEYAR  100 (124)
T ss_dssp             EEECCS
T ss_pred             EEEEec
Confidence            999994

>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A

Probab=99.71  E-value=2.3e-17  Score=126.96  Aligned_cols=81  Identities=17%  Similarity=0.187  Sum_probs=71.8

Q ss_pred             CCCCeEEEcCC--CCCCC--------HHHHHHhhccCCcceEEEeecCCCC--CCceeEEEEEEccHhHHHHHHHHhcCc
Q 026963           18 DESRYLIVRNV--PSLGC--------GDDLLKLFATYGDIEECKPMDAEDC--DPFTDVYFIKFRLFSNARFAKRKLDEF   85 (230)
Q Consensus        18 ~eS~~LyV~NL--P~~~t--------eedL~~LFS~fG~I~~v~il~d~~t--gksrG~AFV~F~d~edA~~A~~~LnG~   85 (230)
                      .+|+.|.+.|+  |....        ++||+++|++||+|.+|.|+.+..+  +.++|+|||+|.+.++|..|++.|||.
T Consensus         3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~   82 (105)
T 3v4m_A            3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR   82 (105)
T ss_dssp             SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred             CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence            47899999997  33332        3689999999999999999998765  468999999999999999999999999


Q ss_pred             eeCCceeEEEecC
Q 026963           86 VFLGNRLKVSYAS   98 (230)
Q Consensus        86 ~f~Gr~L~VsyA~   98 (230)
                      .|.|++|+|+|++
T Consensus        83 ~f~GR~i~v~~~~   95 (105)
T 3v4m_A           83 KFANRVVVTKYCD   95 (105)
T ss_dssp             EETTEECEEEEEC
T ss_pred             EeCCCEEEEEEeC
Confidence            9999999999995

>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A

Probab=99.71  E-value=2.2e-17  Score=127.31  Aligned_cols=72  Identities=21%  Similarity=0.302  Sum_probs=65.5

Q ss_pred             CCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCce-----eE
Q 026963           19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNR-----LK   93 (230)
Q Consensus        19 eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~-----L~   93 (230)
                      .+.+|||+|||+.+++++|+++|++||+|.+|.++.+       |||||+|.+.++|..|++.|||+.|.|+.     ++
T Consensus        15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~   87 (115)
T 3beg_B           15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIR   87 (115)
T ss_dssp             --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCE
T ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEE
Confidence            4578999999999999999999999999999999876       89999999999999999999999999999     55


Q ss_pred             EEec
Q 026963           94 VSYA   97 (230)
Q Consensus        94 VsyA   97 (230)
                      |..+
T Consensus        88 v~~~   91 (115)
T 3beg_B           88 VKVD   91 (115)
T ss_dssp             EEEC
T ss_pred             eccC
Confidence            5555

>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A

Probab=99.70  E-value=3.3e-17  Score=141.37  Aligned_cols=81  Identities=20%  Similarity=0.198  Sum_probs=75.2

Q ss_pred             cCCCCeEEEcCCCCC-CCHHHHHHhhccCCcceEEEeecCCC-CCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEE
Q 026963           17 CDESRYLIVRNVPSL-GCGDDLLKLFATYGDIEECKPMDAED-CDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKV   94 (230)
Q Consensus        17 ~~eS~~LyV~NLP~~-~teedL~~LFS~fG~I~~v~il~d~~-tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~V   94 (230)
                      ..++.+|||+|||+. +++++|+++|++||+|..|.++.+.. |+.++|||||+|.+.++|..|+ .|||..|.|++|+|
T Consensus       207 ~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V  285 (292)
T 2ghp_A          207 TLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREISV  285 (292)
T ss_dssp             CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEEE
T ss_pred             CCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEEE
Confidence            346789999999999 99999999999999999999999877 6999999999999999999999 99999999999999


Q ss_pred             EecC
Q 026963           95 SYAS   98 (230)
Q Consensus        95 syA~   98 (230)
                      +||.
T Consensus       286 ~~a~  289 (292)
T 2ghp_A          286 SLAD  289 (292)
T ss_dssp             EECC
T ss_pred             EEec
Confidence            9994

>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A

Probab=99.70  E-value=3e-17  Score=131.11  Aligned_cols=77  Identities=14%  Similarity=0.142  Sum_probs=71.9

Q ss_pred             CCCCeEEEcCCCCCCCHHHHHHhhccCCcce--EEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEE
Q 026963           18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIE--ECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVS   95 (230)
Q Consensus        18 ~eS~~LyV~NLP~~~teedL~~LFS~fG~I~--~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~Vs   95 (230)
                      .+..+|||+|||+.++++||+++|++| .|.  +|.|+.|++ |+++|||||+|.+.++|..|++. +|..|.|++|.|.
T Consensus        40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR~I~V~  116 (126)
T 2hgm_A           40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGK-HKERIGHRYIEVF  116 (126)
T ss_dssp             SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTT-TTCCBTTBCCCCE
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHH-CCCEECCEEEEEE
Confidence            456799999999999999999999999 566  999999987 99999999999999999999985 7899999999999


Q ss_pred             ec
Q 026963           96 YA   97 (230)
Q Consensus        96 yA   97 (230)
                      +|
T Consensus       117 ~a  118 (126)
T 2hgm_A          117 KS  118 (126)
T ss_dssp             EE
T ss_pred             EC
Confidence            98

>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A

Probab=99.70  E-value=2.1e-18  Score=136.63  Aligned_cols=148  Identities=18%  Similarity=0.223  Sum_probs=109.8

Q ss_pred             CCCeEEEcCCCCCCCHHHHHHhhccC----C-------cceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCcee
Q 026963           19 ESRYLIVRNVPSLGCGDDLLKLFATY----G-------DIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVF   87 (230)
Q Consensus        19 eS~~LyV~NLP~~~teedL~~LFS~f----G-------~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f   87 (230)
                      ++++|||+|||..+++++|+++|++|    |       .|.++.+..      ++|||||+|.+.++|..|+ .|||..+
T Consensus         3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~------~~g~afV~f~~~~~A~~A~-~~~~~~~   75 (172)
T 2g4b_A            3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ------DKNFAFLEFRSVDETTQAM-AFDGIIF   75 (172)
T ss_dssp             GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEET------TTTEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred             cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecC------CCCEEEEEeCCHHHHHHHH-HhCCcEe
Confidence            57899999999999999999999999    6       777777654      4799999999999999999 9999999


Q ss_pred             CCceeEEEecCCCCChHHHHHHHHHHHHHHHHHhh-cCCCCCCCcccccc-cCCCCCCCCCCCCcchhhhhhhhcccccc
Q 026963           88 LGNRLKVSYASQFESLADTKDKLETRRKEVLARLN-SGRSKVPNIHSSVD-LGEPSLVTAPLQPNLVSEQITSWQRASSE  165 (230)
Q Consensus        88 ~Gr~L~VsyA~e~Es~~d~r~Kl~~rr~ev~~Rl~-~n~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  165 (230)
                      .|++|+|.++........            ...+- .|+|..+++.+.++ +..+|   .+.++.++...-+...++ .+
T Consensus        76 ~g~~i~v~~~~~~~~~~~------------~~~l~v~nlp~~~t~~~l~~~f~~~G---~v~~v~i~~~~~~g~~~g-~a  139 (172)
T 2g4b_A           76 QGQSLKIRRPHDYQPLPG------------AHKLFIGGLPNYLNDDQVKELLTSFG---PLKAFNLVKDSATGLSKG-YA  139 (172)
T ss_dssp             TTEECEEECCSSCCCCTT------------TTCEEEECCCTTCCHHHHHHHHHTTS---CEEEEEEEECTTTCSEEE-EE
T ss_pred             cCceeeecCCcccCCCCC------------CCEEEEEcCCCcCCHHHHHHHHHhcC---CceEEEEEecCCCCCcce-EE
Confidence            999999999865433221            01121 57787777776666 77777   343444444444445566 57


Q ss_pred             cccccccCCCCceeeccCcccccc
Q 026963          166 SQRISHVNESPITRVSSDKDYFAS  189 (230)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~  189 (230)
                      |..+....++..+.-.+|...|.+
T Consensus       140 fV~f~~~~~A~~A~~~l~g~~~~g  163 (172)
T 2g4b_A          140 FCEYVDINVTDQAIAGLNGMQLGD  163 (172)
T ss_dssp             EEEESSTTHHHHHHHHHTTCEETT
T ss_pred             EEEeCCHHHHHHHHHHcCCCEECC
Confidence            777777777766665566655554

>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A

Probab=99.70  E-value=3.1e-17  Score=130.80  Aligned_cols=76  Identities=16%  Similarity=0.205  Sum_probs=70.7

Q ss_pred             CCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEecC
Q 026963           19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYAS   98 (230)
Q Consensus        19 eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA~   98 (230)
                      ++.+|||+|||..+++++|+++|++||.|..+     ..++.++|||||+|.+.++|..|++.|||..|.|++|+|+||.
T Consensus        98 ~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~  172 (175)
T 1fje_B           98 AARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTG  172 (175)
T ss_dssp             GGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECS
T ss_pred             cCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecC
Confidence            46799999999999999999999999999876     4568999999999999999999999999999999999999995


Q ss_pred             C
Q 026963           99 Q   99 (230)
Q Consensus        99 e   99 (230)
                      +
T Consensus       173 ~  173 (175)
T 1fje_B          173 E  173 (175)
T ss_dssp             S
T ss_pred             C
Confidence            3

>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A

Probab=99.69  E-value=3.7e-17  Score=117.92  Aligned_cols=72  Identities=22%  Similarity=0.384  Sum_probs=67.3

Q ss_pred             CCCCeEEEcCCCCCCCHHHHHHhhccC----C-------cceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCce
Q 026963           18 DESRYLIVRNVPSLGCGDDLLKLFATY----G-------DIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFV   86 (230)
Q Consensus        18 ~eS~~LyV~NLP~~~teedL~~LFS~f----G-------~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~   86 (230)
                      .++++|||+|||+.+++++|+++|++|    |       +|.+|.++.+      +|||||+|.+.++|..|+ .|||..
T Consensus         4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~   76 (87)
T 2hzc_A            4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGII   76 (87)
T ss_dssp             GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCE
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCE
Confidence            357899999999999999999999999    8       9999998865      699999999999999999 999999


Q ss_pred             eCCceeEEEe
Q 026963           87 FLGNRLKVSY   96 (230)
Q Consensus        87 f~Gr~L~Vsy   96 (230)
                      |.|++|+|+.
T Consensus        77 ~~g~~l~V~r   86 (87)
T 2hzc_A           77 FQGQSLKIRR   86 (87)
T ss_dssp             ETTEECEEEC
T ss_pred             ECCeEEEEeC
Confidence            9999999974

>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.69  E-value=2.4e-17  Score=120.12  Aligned_cols=73  Identities=22%  Similarity=0.217  Sum_probs=64.6

Q ss_pred             CCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCcee--CCceeEEE
Q 026963           18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVF--LGNRLKVS   95 (230)
Q Consensus        18 ~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f--~Gr~L~Vs   95 (230)
                      .++++|||+|||+.+++++|+++|++||+|.+|.++.+     ++|||||+|.+.++|..    ++|..+  .|++|+|+
T Consensus         3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~----~~~~~~~~~g~~l~v~   73 (88)
T 1wf0_A            3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQS----LCGEDLIIKGISVHIS   73 (88)
T ss_dssp             SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHH----TTTCEEEETTEEEEEE
T ss_pred             CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHH----HhcCCceeCCEEEEEE
Confidence            56899999999999999999999999999999999865     68999999999999975    455544  89999999


Q ss_pred             ecCC
Q 026963           96 YASQ   99 (230)
Q Consensus        96 yA~e   99 (230)
                      +|.+
T Consensus        74 ~a~~   77 (88)
T 1wf0_A           74 NAEP   77 (88)
T ss_dssp             CCCC
T ss_pred             ecCC
Confidence            9953

>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A

Probab=99.69  E-value=1e-18  Score=150.93  Aligned_cols=162  Identities=10%  Similarity=0.042  Sum_probs=108.1

Q ss_pred             CCCCeEEEcCCCCCCCHHHHHHhhccCC-cceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEe
Q 026963           18 DESRYLIVRNVPSLGCGDDLLKLFATYG-DIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSY   96 (230)
Q Consensus        18 ~eS~~LyV~NLP~~~teedL~~LFS~fG-~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~Vsy   96 (230)
                      .++.+|||+|||+.+++++|.++|++|| +|.+|.++.+.. +.++|||||.|.+.++|..|+..|||..+.|++|.|.|
T Consensus       115 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~  193 (292)
T 2ghp_A          115 LTECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKV  193 (292)
T ss_dssp             CCSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred             CCCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence            4688999999999999999999999999 999999999866 78999999999999999999999999999999999999


Q ss_pred             cCCCCChHHHHHHHHHHHHHHHHHhh-cCCCCC-CCcccccc-cCCCCCCCCCCCCcchhhhh-hhhccccccccccccc
Q 026963           97 ASQFESLADTKDKLETRRKEVLARLN-SGRSKV-PNIHSSVD-LGEPSLVTAPLQPNLVSEQI-TSWQRASSESQRISHV  172 (230)
Q Consensus        97 A~e~Es~~d~r~Kl~~rr~ev~~Rl~-~n~~~~-~~~~~~~~-~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  172 (230)
                      |.+..........     ......+- .|+|.. +++...++ +..+|.   +.++.++...- +...++ .+|..|...
T Consensus       194 a~~~~~~~~~~~~-----~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~---v~~v~i~~~~~~tg~~~g-~afV~F~~~  264 (292)
T 2ghp_A          194 SNPLEKSKRTDSA-----TLEGREIMIRNLSTELLDENLLRESFEGFGS---IEKINIPAGQKEHSFNNC-CAFMVFENK  264 (292)
T ss_dssp             CCCC--------------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSC---EEEEECCSCCC---CCCE-EEEEEESSH
T ss_pred             CCCCccccccccc-----CCCCceEEEECCCcccCCHHHHHHHHhccCC---eeEEEEEecCCcCCCCce-EEEEEeCCH
Confidence            9432221100000     00001111 356666 65555555 666663   32333322221 133455 577888877


Q ss_pred             CCCCceeeccCccccccc
Q 026963          173 NESPITRVSSDKDYFASQ  190 (230)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~  190 (230)
                      .+|..+. .+|..+|.+.
T Consensus       265 ~~A~~A~-~l~g~~~~g~  281 (292)
T 2ghp_A          265 DSAERAL-QMNRSLLGNR  281 (292)
T ss_dssp             HHHHHHG-GGTTEEETTE
T ss_pred             HHHHHHH-HhcCCEECCc
Confidence            7887777 7777777653

>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A

Probab=99.68  E-value=6.6e-17  Score=127.51  Aligned_cols=81  Identities=15%  Similarity=0.231  Sum_probs=72.3

Q ss_pred             CCCCeEEEcCCCC-----CCCHHHHHHhhccCCcceEEEeecCCC----CCCceeEEEEEEccHhHHHHHHHHhcCceeC
Q 026963           18 DESRYLIVRNVPS-----LGCGDDLLKLFATYGDIEECKPMDAED----CDPFTDVYFIKFRLFSNARFAKRKLDEFVFL   88 (230)
Q Consensus        18 ~eS~~LyV~NLP~-----~~teedL~~LFS~fG~I~~v~il~d~~----tgksrG~AFV~F~d~edA~~A~~~LnG~~f~   88 (230)
                      .+|++|+++|+-.     ...++||++.|++||+|.+|.|+.++.    ++.++|++||+|.+.++|..|++.|||..|.
T Consensus        18 ~ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~   97 (118)
T 3ue2_A           18 QESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA   97 (118)
T ss_dssp             HSCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEEC
Confidence            3789999999842     124689999999999999999998864    4678899999999999999999999999999


Q ss_pred             CceeEEEecC
Q 026963           89 GNRLKVSYAS   98 (230)
Q Consensus        89 Gr~L~VsyA~   98 (230)
                      |++|+|+|++
T Consensus        98 GR~i~v~~~~  107 (118)
T 3ue2_A           98 GRKVVAEVYD  107 (118)
T ss_dssp             TEECEEEEEC
T ss_pred             CcEEEEEEcC
Confidence            9999999995

>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A

Probab=99.68  E-value=1.6e-16  Score=133.47  Aligned_cols=79  Identities=13%  Similarity=0.226  Sum_probs=73.1

Q ss_pred             CCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEecCC
Q 026963           20 SRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYASQ   99 (230)
Q Consensus        20 S~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA~e   99 (230)
                      +++|||+|||+.+++++|.++|++||+|.+|.++.+. ++.++|||||+|++.++|..|+..++ ..|.|++|.|.++.+
T Consensus       109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~Gr~l~V~~~~~  186 (193)
T 2voo_A          109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETPG-QKYKETDLLILFKDD  186 (193)
T ss_dssp             HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCTT-CEETTEECEEEETTT
T ss_pred             cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhCC-CeECCEEEEEEEhHH
Confidence            5789999999999999999999999999999999986 48999999999999999999998775 599999999999965


Q ss_pred             C
Q 026963          100 F  100 (230)
Q Consensus       100 ~  100 (230)
                      +
T Consensus       187 y  187 (193)
T 2voo_A          187 Y  187 (193)
T ss_dssp             C
T ss_pred             H
Confidence            4

>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.68  E-value=1.9e-16  Score=121.26  Aligned_cols=80  Identities=19%  Similarity=0.152  Sum_probs=69.3

Q ss_pred             ccCCCCeEEEcCCCCCCC-----------HHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcC
Q 026963           16 VCDESRYLIVRNVPSLGC-----------GDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDE   84 (230)
Q Consensus        16 v~~eS~~LyV~NLP~~~t-----------eedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG   84 (230)
                      .+.++++|+|+||.....           +++|+++|++||+|.+|.| .++   .++|||||+|.+.++|..|++.|||
T Consensus        11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng   86 (112)
T 2dit_A           11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDG   86 (112)
T ss_dssp             CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTT
T ss_pred             CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCC
Confidence            456789999999954322           5799999999999999976 443   3799999999999999999999999


Q ss_pred             ceeCCceeEEEecCC
Q 026963           85 FVFLGNRLKVSYASQ   99 (230)
Q Consensus        85 ~~f~Gr~L~VsyA~e   99 (230)
                      ..|.|++|+|.||.+
T Consensus        87 ~~~~gr~l~v~~a~~  101 (112)
T 2dit_A           87 RWFGGRQITAQAWDG  101 (112)
T ss_dssp             CEETTEECEEEECCS
T ss_pred             CEECCcEEEEEEeCC
Confidence            999999999999943

>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A

Probab=99.67  E-value=1.9e-16  Score=136.01  Aligned_cols=78  Identities=23%  Similarity=0.328  Sum_probs=72.5

Q ss_pred             ccCCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeC-CceeEE
Q 026963           16 VCDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFL-GNRLKV   94 (230)
Q Consensus        16 v~~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~-Gr~L~V   94 (230)
                      ...++++|||+|||..+++++|+++|++||.|.+|.++.++     +|||||+|.+.++|..|++.|||..|. |++|+|
T Consensus       203 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v  277 (282)
T 3pgw_A          203 ENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKI  277 (282)
T ss_pred             CCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEE
Confidence            34567899999999999999999999999999999999763     599999999999999999999999999 999999


Q ss_pred             EecC
Q 026963           95 SYAS   98 (230)
Q Consensus        95 syA~   98 (230)
                      +||.
T Consensus       278 ~~ak  281 (282)
T 3pgw_A          278 SFAK  281 (282)
T ss_pred             EEec
Confidence            9993

>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A

Probab=99.66  E-value=1.4e-16  Score=134.61  Aligned_cols=77  Identities=18%  Similarity=0.327  Sum_probs=72.7

Q ss_pred             CCCCeEEEcCCCC-CCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEe
Q 026963           18 DESRYLIVRNVPS-LGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSY   96 (230)
Q Consensus        18 ~eS~~LyV~NLP~-~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~Vsy   96 (230)
                      .++++|||+|||+ .+++++|+++|++||+|.+|.++.++     +|||||+|.+.++|..|++.|||..|.|++|.|.|
T Consensus        32 ~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~  106 (229)
T 2adc_A           32 AGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITL  106 (229)
T ss_dssp             CCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEEC
T ss_pred             CCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence            4688999999999 99999999999999999999999874     79999999999999999999999999999999999


Q ss_pred             cCC
Q 026963           97 ASQ   99 (230)
Q Consensus        97 A~e   99 (230)
                      |..
T Consensus       107 a~~  109 (229)
T 2adc_A          107 SKH  109 (229)
T ss_dssp             CSC
T ss_pred             ecC
Confidence            953

>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1

Probab=99.66  E-value=1.2e-16  Score=130.38  Aligned_cols=75  Identities=19%  Similarity=0.332  Sum_probs=71.3

Q ss_pred             CCCeEEEcCCCC-CCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963           19 ESRYLIVRNVPS-LGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA   97 (230)
Q Consensus        19 eS~~LyV~NLP~-~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA   97 (230)
                      .+++|||+|||+ .+++++|+++|++||+|.+|.++.++     +|||||+|.+.++|..|++.|||..|.|++|+|.||
T Consensus         2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a   76 (198)
T 1qm9_A            2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLS   76 (198)
T ss_dssp             CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEEC
T ss_pred             CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEe
Confidence            368999999999 99999999999999999999999874     799999999999999999999999999999999999


Q ss_pred             C
Q 026963           98 S   98 (230)
Q Consensus        98 ~   98 (230)
                      .
T Consensus        77 ~   77 (198)
T 1qm9_A           77 K   77 (198)
T ss_dssp             C
T ss_pred             c
Confidence            5

>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3

Probab=99.65  E-value=5.4e-17  Score=124.48  Aligned_cols=73  Identities=21%  Similarity=0.311  Sum_probs=63.0

Q ss_pred             EcCCCCCCCHHHHHHhh------------ccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCcee
Q 026963           25 VRNVPSLGCGDDLLKLF------------ATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRL   92 (230)
Q Consensus        25 V~NLP~~~teedL~~LF------------S~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L   92 (230)
                      +.|||+.+++++|.+.|            ++||+|.+|.|+.+.. +.++|||||.|.+.++|..|++.|||..|.|++|
T Consensus        20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~-~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i   98 (104)
T 1jmt_A           20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLG-DHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI   98 (104)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSS-SSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred             cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCC-CCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence            45555555666666555            9999999999998864 7899999999999999999999999999999999


Q ss_pred             EEEecC
Q 026963           93 KVSYAS   98 (230)
Q Consensus        93 ~VsyA~   98 (230)
                      +|+|+|
T Consensus        99 ~v~~sp  104 (104)
T 1jmt_A           99 HAELSP  104 (104)
T ss_dssp             CEEECC
T ss_pred             EEEEcC
Confidence            999986

>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A

Probab=99.65  E-value=3.7e-17  Score=130.37  Aligned_cols=151  Identities=9%  Similarity=0.008  Sum_probs=108.2

Q ss_pred             CCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963           18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA   97 (230)
Q Consensus        18 ~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA   97 (230)
                      .++++|||+|||..+++++|+++|++||.|.. .++.+..++.++|||||+|.+.++|..|+ .|||..+.|++|+|.++
T Consensus        11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~v~~~   88 (175)
T 1fje_B           11 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKLEKP   88 (175)
T ss_dssp             SSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEETTEEEEEECC
T ss_pred             CCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHH-hcCCCEeCCeEEEEecC
Confidence            46789999999999999999999999999987 44455677899999999999999999999 59999999999999999


Q ss_pred             CCCCChHHHHHHHHHHHHHHHHHhh-cCCCCCCCcccccc-cCCCCCCCCCCCCcchhhhhhhhcccccccccccccCCC
Q 026963           98 SQFESLADTKDKLETRRKEVLARLN-SGRSKVPNIHSSVD-LGEPSLVTAPLQPNLVSEQITSWQRASSESQRISHVNES  175 (230)
Q Consensus        98 ~e~Es~~d~r~Kl~~rr~ev~~Rl~-~n~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (230)
                      ...+......          ...+- .|+|..+.+.+.++ +...|...      ++  ..+...++ .+|..|....++
T Consensus        89 ~~~~~~~~~~----------~~~l~v~nlp~~~t~~~l~~~F~~~g~v~------~~--~~~~~~~g-~afV~f~~~~~A  149 (175)
T 1fje_B           89 KGRDSKKVRA----------ARTLLAKNLSFNITEDELKEVFEDALEIR------LV--SQDGKSKG-IAYIEFKSEADA  149 (175)
T ss_dssp             CCSSCSTTGG----------GGEEEEESCCSSCCHHHHHHHCTTCSEEE------EE--CSSSSCCS-EEEEECSSHHHH
T ss_pred             CCcccccccc----------CCEEEEeCCCCCCCHHHHHHHHHhcCeEE------Ee--cCCCCCce-EEEEEECCHHHH
Confidence            5433221100          01111 57777777776666 66666222      11  22334455 566777666666


Q ss_pred             CceeeccCcccccc
Q 026963          176 PITRVSSDKDYFAS  189 (230)
Q Consensus       176 ~~~~~~~~~~~~~~  189 (230)
                      ..+.-.+|...|.+
T Consensus       150 ~~A~~~l~g~~~~g  163 (175)
T 1fje_B          150 EKNLEEKQGAEIDG  163 (175)
T ss_dssp             HHHHHHHTEEEETT
T ss_pred             HHHHHHhCCCEECC
Confidence            66655555555554

>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A

Probab=99.64  E-value=2.9e-16  Score=132.61  Aligned_cols=78  Identities=12%  Similarity=0.105  Sum_probs=71.1

Q ss_pred             CCCCeEEEcCCCCCCCHHHHHHhhccCCcc--eEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCc----e
Q 026963           18 DESRYLIVRNVPSLGCGDDLLKLFATYGDI--EECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGN----R   91 (230)
Q Consensus        18 ~eS~~LyV~NLP~~~teedL~~LFS~fG~I--~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr----~   91 (230)
                      .++++|||+|||+.+++++|+++|++||.|  .+|+++.+.  +..+|+|||+|.+.++|..|+..|||+.+.|.    |
T Consensus       121 ~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p  198 (205)
T 3tyt_A          121 HPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYP  198 (205)
T ss_dssp             CCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSC
T ss_pred             CCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcc
Confidence            567899999999999999999999999999  899998775  55679999999999999999999999999997    6


Q ss_pred             eEEEec
Q 026963           92 LKVSYA   97 (230)
Q Consensus        92 L~VsyA   97 (230)
                      +.|.||
T Consensus       199 ~~vk~~  204 (205)
T 3tyt_A          199 YTLKLC  204 (205)
T ss_dssp             EECEEE
T ss_pred             eEEEec
Confidence            777776

>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1

Probab=99.64  E-value=3.8e-16  Score=127.36  Aligned_cols=77  Identities=22%  Similarity=0.248  Sum_probs=71.6

Q ss_pred             cCCCCeEEEcCCCCCCCHHHHHHhhccCC-cceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeC-CceeEE
Q 026963           17 CDESRYLIVRNVPSLGCGDDLLKLFATYG-DIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFL-GNRLKV   94 (230)
Q Consensus        17 ~~eS~~LyV~NLP~~~teedL~~LFS~fG-~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~-Gr~L~V   94 (230)
                      ..++.+|||+|||..+++++|+++|++|| +|.+|.++.+     .+|+|||+|.+.++|..|+..|||..+. |++|+|
T Consensus       117 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v  191 (198)
T 1qm9_A          117 FPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRV  191 (198)
T ss_dssp             CCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST-----TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCE
T ss_pred             CCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC-----CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEE
Confidence            34688999999999999999999999999 9999999764     2799999999999999999999999999 999999


Q ss_pred             EecC
Q 026963           95 SYAS   98 (230)
Q Consensus        95 syA~   98 (230)
                      +||.
T Consensus       192 ~~a~  195 (198)
T 1qm9_A          192 SFSK  195 (198)
T ss_dssp             EEEC
T ss_pred             Eeec
Confidence            9994

>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A

Probab=99.63  E-value=2.8e-16  Score=138.29  Aligned_cols=77  Identities=23%  Similarity=0.402  Sum_probs=70.5

Q ss_pred             cCCCCeEEEcCCCCCC---------CHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCcee
Q 026963           17 CDESRYLIVRNVPSLG---------CGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVF   87 (230)
Q Consensus        17 ~~eS~~LyV~NLP~~~---------teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f   87 (230)
                      ..++++|||+|||..+         ++++|+++|++||+|++|+++.+      +|||||+|.+.++|+.|++.|||..|
T Consensus       131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~------kG~AFV~F~~~~~Ae~A~~am~g~~l  204 (240)
T 3u1l_A          131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES------KNCGFVKFKYQANAEFAKEAMSNQTL  204 (240)
T ss_dssp             CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred             ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC------CCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence            3467899999999877         69999999999999999999864      79999999999999999999999999


Q ss_pred             ------------CCceeEEEecCC
Q 026963           88 ------------LGNRLKVSYASQ   99 (230)
Q Consensus        88 ------------~Gr~L~VsyA~e   99 (230)
                                  .|++|.|.||.+
T Consensus       205 ~~~~~~e~~~~~~gr~L~V~wA~~  228 (240)
T 3u1l_A          205 LLPSDKEWDDRREGTGLLVKWANE  228 (240)
T ss_dssp             CCTTSTTGGGGGGSCCCEEEECC-
T ss_pred             eccccccccccCCCCEEEEEEccC
Confidence                        899999999953

>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A

Probab=99.62  E-value=7.9e-17  Score=130.20  Aligned_cols=74  Identities=20%  Similarity=0.318  Sum_probs=65.7

Q ss_pred             CCCeEEEcCCCCCCCHHHHHHhhccCC-----------cceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCcee
Q 026963           19 ESRYLIVRNVPSLGCGDDLLKLFATYG-----------DIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVF   87 (230)
Q Consensus        19 eS~~LyV~NLP~~~teedL~~LFS~fG-----------~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f   87 (230)
                      ++++|||+|||+.+++++|+++|++||           .|.++.+      +.++|||||+|.+.++|..|+ .|||..|
T Consensus         3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al-~l~g~~~   75 (198)
T 2yh0_A            3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAM-AFDGIIF   75 (198)
T ss_dssp             -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHG-GGTTEEE
T ss_pred             ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHH-HhcCCEE
Confidence            578999999999999999999999995           5555555      345799999999999999999 8999999


Q ss_pred             CCceeEEEecCC
Q 026963           88 LGNRLKVSYASQ   99 (230)
Q Consensus        88 ~Gr~L~VsyA~e   99 (230)
                      .|++|+|.++..
T Consensus        76 ~g~~i~v~~~~~   87 (198)
T 2yh0_A           76 QGQSLKIRRPHD   87 (198)
T ss_dssp             TTEEEEEECCCC
T ss_pred             cCceEEEeCCCC
Confidence            999999999854

>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B

Probab=99.62  E-value=8.6e-16  Score=132.34  Aligned_cols=82  Identities=21%  Similarity=0.235  Sum_probs=74.6

Q ss_pred             cCCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcC-ceeC---Ccee
Q 026963           17 CDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDE-FVFL---GNRL   92 (230)
Q Consensus        17 ~~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG-~~f~---Gr~L   92 (230)
                      +.++.+|||+|||..+++++|+++|++||+|.+|.++.+ .+|.++|||||+|.+.++|..|+..||| ..+.   |++|
T Consensus        93 a~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i  171 (261)
T 3sde_A           93 ATHGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD-DRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPV  171 (261)
T ss_dssp             CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE-TTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBC
T ss_pred             cccCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC-CCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceE
Confidence            456789999999999999999999999999999999999 6899999999999999999999999955 4444   9999


Q ss_pred             EEEecCC
Q 026963           93 KVSYASQ   99 (230)
Q Consensus        93 ~VsyA~e   99 (230)
                      .|.++..
T Consensus       172 ~v~~~~~  178 (261)
T 3sde_A          172 IVEPMEQ  178 (261)
T ss_dssp             EEEECCC
T ss_pred             EEeeccc
Confidence            9999953

>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A

Probab=99.61  E-value=1.5e-15  Score=128.22  Aligned_cols=76  Identities=22%  Similarity=0.255  Sum_probs=70.8

Q ss_pred             CCCCeEEEcCCCCCCCHHHHHHhhccCC-cceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeC-CceeEEE
Q 026963           18 DESRYLIVRNVPSLGCGDDLLKLFATYG-DIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFL-GNRLKVS   95 (230)
Q Consensus        18 ~eS~~LyV~NLP~~~teedL~~LFS~fG-~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~-Gr~L~Vs   95 (230)
                      .++.+|||+|||..+++++|+++|++|| +|..|.++.+     .+|+|||+|.+.++|..|++.|||..|. |++|+|+
T Consensus       149 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~  223 (229)
T 2adc_A          149 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVS  223 (229)
T ss_dssp             CSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEE
T ss_pred             CCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEE
Confidence            4578999999999999999999999999 9999999653     3689999999999999999999999999 9999999


Q ss_pred             ecC
Q 026963           96 YAS   98 (230)
Q Consensus        96 yA~   98 (230)
                      ||.
T Consensus       224 ~a~  226 (229)
T 2adc_A          224 FSK  226 (229)
T ss_dssp             ECS
T ss_pred             Eec
Confidence            994

>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B

Probab=99.60  E-value=1.8e-15  Score=130.30  Aligned_cols=132  Identities=17%  Similarity=0.184  Sum_probs=95.2

Q ss_pred             CCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963           18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA   97 (230)
Q Consensus        18 ~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA   97 (230)
                      .++++|||+|||+.+++++|.++|++||+|.+|.+..+      +|||||.|.+.++|..|+..|||..+.|++|.|.|+
T Consensus        20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a   93 (261)
T 3sde_A           20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFA   93 (261)
T ss_dssp             CGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred             CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeec
Confidence            34578999999999999999999999999999999754      699999999999999999999999999999999999


Q ss_pred             CCCCChHHHHHHHHHHHHHHHHHhh-cCCCCCCCcccccc-cCCCCCCCCCCCCcchhhhhhhhcccccccccccccCCC
Q 026963           98 SQFESLADTKDKLETRRKEVLARLN-SGRSKVPNIHSSVD-LGEPSLVTAPLQPNLVSEQITSWQRASSESQRISHVNES  175 (230)
Q Consensus        98 ~e~Es~~d~r~Kl~~rr~ev~~Rl~-~n~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (230)
                      .+..                  .+- .|+|..+++....+ |..+|   .+.++.++... +...++ .+|..|....++
T Consensus        94 ~~~~------------------~l~v~nl~~~~t~~~l~~~F~~~G---~i~~v~i~~~~-~g~~~g-~afV~f~~~~~A  150 (261)
T 3sde_A           94 THGA------------------ALTVKNLSPVVSNELLEQAFSQFG---PVEKAVVVVDD-RGRATG-KGFVEFAAKPPA  150 (261)
T ss_dssp             CCSS------------------EEEEESCCTTCCHHHHHHHHGGGS---CEEEEEEEEET-TSCEEE-EEEEEESSHHHH
T ss_pred             ccCC------------------cccccCCCCCCCHHHHHHHHHhcC---CeEEEEeeeCC-CCCcCc-EEEEEeCCHHHH
Confidence            5311                  111 35666665555555 66666   23233333321 223344 455555444444


Q ss_pred             Cce
Q 026963          176 PIT  178 (230)
Q Consensus       176 ~~~  178 (230)
                      ..+
T Consensus       151 ~~A  153 (261)
T 3sde_A          151 RKA  153 (261)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            433

>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A

Probab=99.56  E-value=9.4e-15  Score=114.67  Aligned_cols=78  Identities=14%  Similarity=0.118  Sum_probs=67.7

Q ss_pred             cCCCCeEEEcCCCCCC----------CHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCce
Q 026963           17 CDESRYLIVRNVPSLG----------CGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFV   86 (230)
Q Consensus        17 ~~eS~~LyV~NLP~~~----------teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~   86 (230)
                      +.+++.|.+.|+=...          .++||++.|++||+|.+|.|.++.    ++|+|||+|.+.++|..|++.|||..
T Consensus         4 p~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~   79 (114)
T 3s6e_A            4 PLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRW   79 (114)
T ss_dssp             CCCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCE
T ss_pred             CCCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCE
Confidence            3578899999974322          126899999999999999997652    58999999999999999999999999


Q ss_pred             eCCceeEEEecC
Q 026963           87 FLGNRLKVSYAS   98 (230)
Q Consensus        87 f~Gr~L~VsyA~   98 (230)
                      |.|++|+|+|++
T Consensus        80 f~GR~i~v~~~~   91 (114)
T 3s6e_A           80 FAGKMITAAYVP   91 (114)
T ss_dssp             ETTEECEEEEEC
T ss_pred             ECCEEEEEEEEc
Confidence            999999999994

>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*

Probab=99.54  E-value=1.1e-14  Score=134.14  Aligned_cols=80  Identities=18%  Similarity=0.213  Sum_probs=71.0

Q ss_pred             eeeeccCCCCeEEEcC--CCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeC-
Q 026963           12 RVYTVCDESRYLIVRN--VPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFL-   88 (230)
Q Consensus        12 kvytv~~eS~~LyV~N--LP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~-   88 (230)
                      .|-....++++|||+|  |+..+++++|+++|++||+|.+|.+..      +||||||+|++.++|+.|++.|||+.+. 
T Consensus        10 ~v~~~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~   83 (345)
T 3tht_A           10 GIETVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVD   83 (345)
T ss_dssp             TCCCCSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEEC
T ss_pred             CceecCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCcccc
Confidence            4566678999999999  578899999999999999999988754      4799999999999999999999999994 


Q ss_pred             --Cc--eeEEEec
Q 026963           89 --GN--RLKVSYA   97 (230)
Q Consensus        89 --Gr--~L~VsyA   97 (230)
                        |+  +|.|+|+
T Consensus        84 ~~g~~~~ly~~~~   96 (345)
T 3tht_A           84 DLGQKITLYLNFV   96 (345)
T ss_dssp             TTSCEEECEEEEC
T ss_pred             ccCCceEEEEEEe
Confidence              45  7999998

>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.51  E-value=7.6e-14  Score=107.16  Aligned_cols=72  Identities=19%  Similarity=0.210  Sum_probs=61.8

Q ss_pred             CCeEEEcCCC-------CCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCcee
Q 026963           20 SRYLIVRNVP-------SLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRL   92 (230)
Q Consensus        20 S~~LyV~NLP-------~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L   92 (230)
                      ...|.|.-.+       ..+++++|+++|++||+|.+|.++     +.++|||||+|.+.++|..|++.++|  +.|++|
T Consensus        10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l   82 (100)
T 2d9o_A           10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEVG--LVDNPL   82 (100)
T ss_dssp             SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBC
T ss_pred             cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeE
Confidence            4566665544       347899999999999999999998     36799999999999999999999665  689999


Q ss_pred             EEEecC
Q 026963           93 KVSYAS   98 (230)
Q Consensus        93 ~VsyA~   98 (230)
                      +|.||.
T Consensus        83 ~V~~a~   88 (100)
T 2d9o_A           83 KISWLE   88 (100)
T ss_dssp             EEECSS
T ss_pred             EEEEcc
Confidence            999994

>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}

Probab=99.33  E-value=2.7e-12  Score=107.80  Aligned_cols=79  Identities=15%  Similarity=0.236  Sum_probs=66.7

Q ss_pred             CCeEEEcCCCC-----CCCHHHHHHhhccCCcceEEEeec----CCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCc
Q 026963           20 SRYLIVRNVPS-----LGCGDDLLKLFATYGDIEECKPMD----AEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGN   90 (230)
Q Consensus        20 S~~LyV~NLP~-----~~teedL~~LFS~fG~I~~v~il~----d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr   90 (230)
                      +..+.+.|+-.     ...+++|.+.|++||+|.++.|..    +.+++.++|++||+|.+.++|.+|++.|||..|.|+
T Consensus       124 s~v~~l~n~v~~~e~~~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr  203 (222)
T 3dxb_A          124 STVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGR  203 (222)
T ss_dssp             CSEEEEESSCCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred             cccchhhcCCCHHHHHHHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCe
Confidence            44555555432     224588999999999999999984    445669999999999999999999999999999999


Q ss_pred             eeEEEecC
Q 026963           91 RLKVSYAS   98 (230)
Q Consensus        91 ~L~VsyA~   98 (230)
                      +|+|+|++
T Consensus       204 ~i~~~~~~  211 (222)
T 3dxb_A          204 KVVAEVYD  211 (222)
T ss_dssp             BCEEEECC
T ss_pred             EEEEEEcC
Confidence            99999995

>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.21  E-value=1.3e-10  Score=92.82  Aligned_cols=74  Identities=15%  Similarity=0.109  Sum_probs=67.6

Q ss_pred             CCCCeEEEcCCCCC-CCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEcc-HhHHHHHHHHh--cCceeCCceeE
Q 026963           18 DESRYLIVRNVPSL-GCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRL-FSNARFAKRKL--DEFVFLGNRLK   93 (230)
Q Consensus        18 ~eS~~LyV~NLP~~-~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d-~edA~~A~~~L--nG~~f~Gr~L~   93 (230)
                      ..+..|||+|||+. ++.++|+++|++||+|..|.++.+..      .|||.|.+ .++|..|+++|  +|..+.|..++
T Consensus        16 ~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~   89 (121)
T 1owx_A           16 KIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNKEVT   89 (121)
T ss_dssp             CCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEE
T ss_pred             cCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCcEEE
Confidence            45778999999999 99999999999999999999998854      49999999 89999999999  58899999999


Q ss_pred             EEec
Q 026963           94 VSYA   97 (230)
Q Consensus        94 VsyA   97 (230)
                      +...
T Consensus        90 ~evL   93 (121)
T 1owx_A           90 WEVL   93 (121)
T ss_dssp             EEEC
T ss_pred             EEEC
Confidence            9987

>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.17  E-value=8.8e-11  Score=90.10  Aligned_cols=73  Identities=19%  Similarity=0.236  Sum_probs=62.8

Q ss_pred             cCCCCeEEEcCCCC----CCCH----HHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeC
Q 026963           17 CDESRYLIVRNVPS----LGCG----DDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFL   88 (230)
Q Consensus        17 ~~eS~~LyV~NLP~----~~te----edL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~   88 (230)
                      ..+..||+|.-+|.    ..-+    .+|.+.|++||+|..+++..|+        +||+|.+.++|..|+. |||..+.
T Consensus         4 GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v~   74 (91)
T 2dnr_A            4 GSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKELL   74 (91)
T ss_dssp             CCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEET
T ss_pred             CCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEeC
Confidence            34667899888772    2223    6799999999999999999863        8999999999999998 9999999


Q ss_pred             CceeEEEecC
Q 026963           89 GNRLKVSYAS   98 (230)
Q Consensus        89 Gr~L~VsyA~   98 (230)
                      |+.|+|.++.
T Consensus        75 Gr~LkV~lkt   84 (91)
T 2dnr_A           75 NRTITIALKS   84 (91)
T ss_dssp             TEEEEEEECC
T ss_pred             CeEEEEEeCC
Confidence            9999999984

>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.99  E-value=6.6e-10  Score=85.87  Aligned_cols=72  Identities=15%  Similarity=0.179  Sum_probs=62.5

Q ss_pred             cCCCCeEEEcCCCCC-----CCH----HHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCcee
Q 026963           17 CDESRYLIVRNVPSL-----GCG----DDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVF   87 (230)
Q Consensus        17 ~~eS~~LyV~NLP~~-----~te----edL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f   87 (230)
                      ..+..||+|.-++..     .-+    .+|.+.|++||+|..+++..|+        +||+|.+.++|..|++ |||..+
T Consensus        12 GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~v   82 (95)
T 1ufw_A           12 GPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMKV   82 (95)
T ss_dssp             CCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSEE
T ss_pred             CCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCeee
Confidence            356789999998742     112    6699999999999999999873        9999999999999999 999999


Q ss_pred             CCceeEEEec
Q 026963           88 LGNRLKVSYA   97 (230)
Q Consensus        88 ~Gr~L~VsyA   97 (230)
                      .|+.|+|.+-
T Consensus        83 ~Gr~L~V~~k   92 (95)
T 1ufw_A           83 KGRAVKISGP   92 (95)
T ss_dssp             TTEEEEEECC
T ss_pred             CCeEEEEecc
Confidence            9999999874

>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}

Probab=98.43  E-value=7.4e-07  Score=70.99  Aligned_cols=71  Identities=13%  Similarity=0.028  Sum_probs=66.3

Q ss_pred             CCeEEEcCCCCCCCHHHHHHhhccC-----CcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEE
Q 026963           20 SRYLIVRNVPSLGCGDDLLKLFATY-----GDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKV   94 (230)
Q Consensus        20 S~~LyV~NLP~~~teedL~~LFS~f-----G~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~V   94 (230)
                      .++|-+-|||+.+++.-+..+..+|     |+|.++.+..|.      |=|+|+|.|...|-+|.=+|||.+|.|++|+|
T Consensus        21 ~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH------~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~   94 (117)
T 2l9w_A           21 ETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF------NGAIIIFRDSKFAAKMLMILNGSQFQGKVIRS   94 (117)
T ss_dssp             TSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT------TEEEEECSCHHHHHHHHHHHSSEEETTEEEEE
T ss_pred             CcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC------CceEEEEccchhhHHHHhhcCCeeecCeEEEe
Confidence            6789999999999999999999999     999999999885      34999999999999999999999999999999


Q ss_pred             Ee
Q 026963           95 SY   96 (230)
Q Consensus        95 sy   96 (230)
                      .=
T Consensus        95 gT   96 (117)
T 2l9w_A           95 GT   96 (117)
T ss_dssp             EC
T ss_pred             cC
Confidence            83

>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1

Probab=98.13  E-value=5.4e-06  Score=64.91  Aligned_cols=73  Identities=25%  Similarity=0.240  Sum_probs=63.7

Q ss_pred             CCeEEEcCCCCCC-CH----HHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEE
Q 026963           20 SRYLIVRNVPSLG-CG----DDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKV   94 (230)
Q Consensus        20 S~~LyV~NLP~~~-te----edL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~V   94 (230)
                      .++|+|.|||..+ ..    +.+++||.+|+++.....++.     ++ -.-|.|.++++|..|...|||..|.|+.|+|
T Consensus         5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkS-----FR-Rirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~   78 (104)
T 1wey_A            5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS-----FK-RVRINFSNPLSAADARLRLHKTEFLGKEMKL   78 (104)
T ss_dssp             CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETT-----TT-EEEEECSSTTHHHHHHHTSTTSEETTEECEE
T ss_pred             CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCc-----ce-EEEEEeCChHHHHHHHHHhccceecCceeEE
Confidence            5689999998744 22    567999999999999998875     33 4799999999999999999999999999999


Q ss_pred             EecC
Q 026963           95 SYAS   98 (230)
Q Consensus        95 syA~   98 (230)
                      -||+
T Consensus        79 YFgq   82 (104)
T 1wey_A           79 YFAQ   82 (104)
T ss_dssp             ECCC
T ss_pred             EecC
Confidence            9995

>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4

Probab=97.80  E-value=0.00016  Score=55.00  Aligned_cols=79  Identities=15%  Similarity=0.279  Sum_probs=63.7

Q ss_pred             CeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCC--CCceeEEEEEEccHhHHHHHHHHhcCceeCCc-----eeE
Q 026963           21 RYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDC--DPFTDVYFIKFRLFSNARFAKRKLDEFVFLGN-----RLK   93 (230)
Q Consensus        21 ~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~t--gksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr-----~L~   93 (230)
                      ..|.||+||+..+++++.+.++.++++.-..-+....+  ...-.-|+|.|.+.+++..-.+.+||+.|.+.     +-.
T Consensus         2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~a~   81 (91)
T 1uw4_A            2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPAI   81 (91)
T ss_dssp             CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEECE
T ss_pred             cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEeeeE
Confidence            46899999999999999999999998766554443322  12346799999999999999999999999753     467


Q ss_pred             EEecCC
Q 026963           94 VSYASQ   99 (230)
Q Consensus        94 VsyA~e   99 (230)
                      |+|||-
T Consensus        82 VE~AP~   87 (91)
T 1uw4_A           82 VEFAPF   87 (91)
T ss_dssp             EEECSS
T ss_pred             EEEcCC
Confidence            999974

>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}

Probab=97.24  E-value=0.00038  Score=54.24  Aligned_cols=52  Identities=23%  Similarity=0.349  Sum_probs=44.5

Q ss_pred             EEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhc
Q 026963           23 LIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLD   83 (230)
Q Consensus        23 LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~Ln   83 (230)
                      |+| +.|......||..||+.||.|. |.=+.|       .-|||.|.+++.|..|+..+.
T Consensus         9 ~~l-~FP~ewKt~Di~~lFs~fggv~-I~WidD-------TsAlvvf~~~~~a~~al~~i~   60 (101)
T 3ctr_A            9 LHV-TFPKEWKTSDLYQLFSAFGNIQ-ISWIDD-------TSAFVSLSQPEQVKIAVNTSK   60 (101)
T ss_dssp             EEE-ECCTTCCHHHHHHHTTTSEEEE-EEEEET-------TEEEEEEEEECHHHHHHHHHT
T ss_pred             EEE-eCChhhhhHHHHHHHhccCCEE-EEEEcC-------CeEEEEecCHHHHHHHHHhcc
Confidence            555 9999999999999999999654 555665       369999999999999999875

>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*

Probab=97.24  E-value=0.00072  Score=52.57  Aligned_cols=53  Identities=23%  Similarity=0.328  Sum_probs=45.0

Q ss_pred             eEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhc
Q 026963           22 YLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLD   83 (230)
Q Consensus        22 ~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~Ln   83 (230)
                      .++| +.|......||..+|+.||.|. |.=+.|       .-|||.|.+++.|..|++.+.
T Consensus        18 Vf~l-~FP~ewKt~DI~~lFs~fggv~-I~WidD-------TsAlvvf~~~~~a~~al~~i~   70 (100)
T 1whv_A           18 VLHV-TFPKEWKTSDLYQLFSAFGNIQ-ISWIDD-------TSAFVSLSQPEQVQIAVNTSK   70 (100)
T ss_dssp             EEEE-ECCTTCCHHHHHHHHTTTCSCC-CEEEET-------TEEEEECSCHHHHHHHHHHHH
T ss_pred             EEEE-eCChhhhhHHHHHHhhccCCEE-EEEEcC-------CeEEEEecCHHHHHHHHHhcc
Confidence            4556 9999999999999999999765 555555       369999999999999999874

>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1

Probab=97.19  E-value=0.0013  Score=52.37  Aligned_cols=69  Identities=23%  Similarity=0.262  Sum_probs=56.4

Q ss_pred             CCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCce-eEEEe
Q 026963           20 SRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNR-LKVSY   96 (230)
Q Consensus        20 S~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~-L~Vsy   96 (230)
                      ...|.|.+.|+. ..+.+...|++||+|.+.....      ...+-.|.|.+..+|++|+.. ||..|.|.. |-|..
T Consensus        24 ~~wVtVFGFp~~-~~~~VL~~F~~~G~Iv~~~~~~------~~NWihI~Y~s~~~A~rAL~k-NG~ii~g~~mIGV~p   93 (119)
T 1wwh_A           24 DTWVTVFGFPQA-SASYILLQFAQYGNILKHVMSN------TGNWMHIRYQSKLQARKALSK-DGRIFGESIMIGVKP   93 (119)
T ss_dssp             GGEEEEECCCGG-GHHHHHHHHHTTSCEEEEEECS------SSSEEEEEESSHHHHHHHHTT-TTCEETTTEECEEEE
T ss_pred             CCEEEEECCCHH-HHHHHHHHHHhhCcEEEeccCC------CCCeEEEEeCCHHHHHHHHHh-CCeEecCCEEEEEEE
Confidence            578999999974 5788999999999999888621      236899999999999999987 999998654 44444

>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}

Probab=97.00  E-value=0.0018  Score=49.99  Aligned_cols=79  Identities=16%  Similarity=0.270  Sum_probs=58.6

Q ss_pred             CCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCC--CCceeEEEEEEccHhHHHHHHHHhcCceeCCc-----ee
Q 026963           20 SRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDC--DPFTDVYFIKFRLFSNARFAKRKLDEFVFLGN-----RL   92 (230)
Q Consensus        20 S~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~t--gksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr-----~L   92 (230)
                      |-.|.||.||+..|++++.+.++.+=++.-..-+....+  ...-.-|+|.|.+.++...-.+..||+.|.+.     +-
T Consensus         9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~a   88 (97)
T 2l08_A            9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYPA   88 (97)
T ss_dssp             CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEEE
T ss_pred             ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEeee
Confidence            557999999999999999888887655432222111111  11224699999999999999999999999764     56


Q ss_pred             EEEecC
Q 026963           93 KVSYAS   98 (230)
Q Consensus        93 ~VsyA~   98 (230)
                      .|+|||
T Consensus        89 ~VE~AP   94 (97)
T 2l08_A           89 VVEFAP   94 (97)
T ss_dssp             EEEECC
T ss_pred             EEEecC
Confidence            799997

>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}

Probab=96.28  E-value=0.01  Score=46.40  Aligned_cols=35  Identities=6%  Similarity=-0.145  Sum_probs=29.0

Q ss_pred             EEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCc
Q 026963           49 ECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEF   85 (230)
Q Consensus        49 ~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~   85 (230)
                      +++++.+.  ..++|||||+|.+.++|+.|+..+++.
T Consensus         2 ~~kl~ln~--~~~~G~~fV~f~~~~~A~~al~~~~~~   36 (158)
T 2kn4_A            2 QYKLILNG--KTLKGETTTEAVDAATAEKVFKQYAND   36 (158)
T ss_dssp             EEEEEEEC--SSCEEEEEEECSSHHHHHHHHHHHHHH
T ss_pred             cEEEEecC--ccccchhHHHHHHHHhHHHHHHhhccc
Confidence            45666664  479999999999999999999988754

>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A

Probab=96.24  E-value=0.0014  Score=51.40  Aligned_cols=39  Identities=8%  Similarity=-0.079  Sum_probs=37.0

Q ss_pred             CCceeEEEEEEccHhHHHHHHHHh-cCceeCCceeEEEecC
Q 026963           59 DPFTDVYFIKFRLFSNARFAKRKL-DEFVFLGNRLKVSYAS   98 (230)
Q Consensus        59 gksrG~AFV~F~d~edA~~A~~~L-nG~~f~Gr~L~VsyA~   98 (230)
                      ...+|+++|+|.+.++|+.|++.| ||..+.| ++.+.+|.
T Consensus        10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~   49 (150)
T 2i2y_A           10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDAT   49 (150)
T ss_dssp             SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTT
T ss_pred             ccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceeccccc
Confidence            578999999999999999999999 9999999 99999984

>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.17  E-value=0.018  Score=44.91  Aligned_cols=69  Identities=17%  Similarity=0.160  Sum_probs=55.5

Q ss_pred             CCeEEEcCCCCCCCHHHHHHhhcc-C----CcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEE
Q 026963           20 SRYLIVRNVPSLGCGDDLLKLFAT-Y----GDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKV   94 (230)
Q Consensus        20 S~~LyV~NLP~~~teedL~~LFS~-f----G~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~V   94 (230)
                      ..+|.|.|||+.+.++-|.-.|+. -    |+|.++....        +-|+|+|.+.+.|++-++. .-+.|+|.+|.|
T Consensus         8 ~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k-~~H~L~~~~LsV   78 (104)
T 2dhx_A            8 GVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQ-ADHELHGAQLSL   78 (104)
T ss_dssp             CCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTC-SCCBSSSSBCEE
T ss_pred             ccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcC-CcceecCeEEEE
Confidence            468999999998888888889988 2    7888888753        4699999999999877654 246788889998


Q ss_pred             Eec
Q 026963           95 SYA   97 (230)
Q Consensus        95 syA   97 (230)
                      .-.
T Consensus        79 ~P~   81 (104)
T 2dhx_A           79 RPA   81 (104)
T ss_dssp             EEC
T ss_pred             EcC
Confidence            644

>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}

Probab=95.87  E-value=0.014  Score=47.33  Aligned_cols=78  Identities=19%  Similarity=0.131  Sum_probs=55.5

Q ss_pred             CCCCeEEEcCCCCCCCHHHHHHhhccCCcceE-EEeecCC--------CCCC-----ceeEEEEEEccHhHHHHHHHHhc
Q 026963           18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEE-CKPMDAE--------DCDP-----FTDVYFIKFRLFSNARFAKRKLD   83 (230)
Q Consensus        18 ~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~-v~il~d~--------~tgk-----srG~AFV~F~d~edA~~A~~~Ln   83 (230)
                      +....+.|.+.|+ .....+.+.|++||.|.+ +.+..+.        ...+     ...+-.|+|.+..+|.+|+. -|
T Consensus         5 ~~e~~VtVFGFp~-~~~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~N   82 (132)
T 3p3d_A            5 NGELAILVFGYPE-TMANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-EN   82 (132)
T ss_dssp             ---CEEEEECCCG-GGHHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TT
T ss_pred             cCceEEEEEecCH-HHHHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hC
Confidence            4456788999986 567888899999999986 2222100        0011     23577999999999999986 59


Q ss_pred             CceeCCceeEEEec
Q 026963           84 EFVFLGNRLKVSYA   97 (230)
Q Consensus        84 G~~f~Gr~L~VsyA   97 (230)
                      |..|.|.-|-|...
T Consensus        83 G~ii~G~mIGV~Py   96 (132)
T 3p3d_A           83 GAVFNGVLLGVIPY   96 (132)
T ss_dssp             TCEETTEECEEEEC
T ss_pred             CeEeCcEEEEEEEC
Confidence            99999987777755

>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}

Probab=94.95  E-value=0.016  Score=55.23  Aligned_cols=56  Identities=13%  Similarity=0.169  Sum_probs=41.8

Q ss_pred             CCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHH
Q 026963           20 SRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRK   81 (230)
Q Consensus        20 S~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~   81 (230)
                      -+.|+|. .|....+.+|.+.|++||+|.++..-++.  |   -||.|+|.+.+++..++..
T Consensus        53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~--g---~~~~vef~~~~~~~~~~~~  108 (464)
T 3pq1_A           53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF--G---LYAVVEFCQKESIGSLQNG  108 (464)
T ss_dssp             HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS--S---EEEEEECC---CCHHHHSS
T ss_pred             cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC--C---eEEEEEeCCHHHHHHHHhc
Confidence            5789998 68889999999999999999999876543  2   6999999999999966544

>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*

Probab=94.71  E-value=0.0012  Score=61.78  Aligned_cols=137  Identities=15%  Similarity=0.151  Sum_probs=74.5

Q ss_pred             HHHHhhccCCcceEEEeecC----C-CCCCceeEE--EEEEccHhHHHHHHHHhcCceeCCceeEEEecCCCCChHHHHH
Q 026963           36 DLLKLFATYGDIEECKPMDA----E-DCDPFTDVY--FIKFRLFSNARFAKRKLDEFVFLGNRLKVSYASQFESLADTKD  108 (230)
Q Consensus        36 dL~~LFS~fG~I~~v~il~d----~-~tgksrG~A--FV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA~e~Es~~d~r~  108 (230)
                      +|..||.++|+|..|..+..    . .+....|++  |+.|....+|..++..++.....++.              ..+
T Consensus         8 ~L~~lF~p~pPl~~~~P~~~~p~~~~~~~~~~gia~~~~~f~~~~~~~~~~~~e~~~~~~~~~--------------~~~   73 (437)
T 3pgw_S            8 NLLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRDAPPPTRAETREERMERK--------------RRE   73 (437)
T ss_pred             cHHHhcCCCCCCcCCCCcccccccccCCCCcccHHHHHHhhcCcccccccccccCHHHHHHHH--------------HHH
Confidence            58999999999998854432    1 233445555  88888777666555444332221110              011


Q ss_pred             HHHHHHHHHHHHhh--------------------cCCCCCCCcccccc-cCCCCCCCCCCCCcchhhhhhhhcccccccc
Q 026963          109 KLETRRKEVLARLN--------------------SGRSKVPNIHSSVD-LGEPSLVTAPLQPNLVSEQITSWQRASSESQ  167 (230)
Q Consensus       109 Kl~~rr~ev~~Rl~--------------------~n~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (230)
                      +.+.....+...++                    .|++..+.+..... |..+|   .+..+.++....+...++ .+|+
T Consensus        74 k~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G---~I~~v~i~~d~~tg~~kG-~aFV  149 (437)
T 3pgw_S           74 KIERRQQEVETELKMWDPHNDPNAQGDAFKTLFVARVNYDTTESKLRREFEVYG---PIKRIHMVYSKRSGKPRG-YAFI  149 (437)
T ss_pred             HHHHHHHHHHHhhhhcCCcccccccCCCCCEEEEeCCCCCCCHHHHHHHHHHcC---CeeEEEeeccCCCCCccc-eEEE
Confidence            11111111111111                    23444444444333 55555   444455555555555666 6788


Q ss_pred             cccccCCCCceeeccCccccccc
Q 026963          168 RISHVNESPITRVSSDKDYFASQ  190 (230)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~  190 (230)
                      .|....++..+.-.+|...|.+.
T Consensus       150 ~F~~~e~A~~Ai~~lng~~i~gr  172 (437)
T 3pgw_S          150 EYEHERDMHSAYKHADGKKIDGR  172 (437)
T ss_pred             eeccHHHHHHHHHHcCCCEECCE
Confidence            88888787777777777777654

>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}

Probab=88.78  E-value=0.84  Score=43.47  Aligned_cols=54  Identities=22%  Similarity=0.322  Sum_probs=44.8

Q ss_pred             CeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhc
Q 026963           21 RYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLD   83 (230)
Q Consensus        21 ~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~Ln   83 (230)
                      ..|+|+ +|..+...+|.++|+.||.| +|..+.+       -.|||.|.+.+.|..+++.++
T Consensus       441 ~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widd-------t~a~V~~~~~~~a~~~l~~~~  494 (507)
T 3d45_A          441 HVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDD-------TSAFVSLSQPEQVQIAVNTSK  494 (507)
T ss_dssp             GEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSS-------SEEEEECSCHHHHHHHHHHHT
T ss_pred             cEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcC-------CeEEEEECCHHHHHHHHHHHH
Confidence            456666 88888889999999999965 5666655       369999999999999999986

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	230
d1h2vz_	93	d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding pro	4e-09
d1b7fa1	82	d.58.7.1 (A:123-204) Sex-lethal protein {Drosophil	5e-09
d1cvja1	80	d.58.7.1 (A:11-90) Poly(A)-binding protein {Human	2e-08
d1x5ua1	93	d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Hu	4e-08
d2f9da1	114	d.58.7.1 (A:12-125) Pre-mRNA branch site protein p	4e-08
d1b7fa2	85	d.58.7.1 (A:205-289) Sex-lethal protein {Drosophil	7e-08
d1no8a_	78	d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus muscu	1e-07
d1rk8a_	88	d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly (Dr	3e-07
d1fxla2	85	d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Ho	4e-07
d2cqca1	83	d.58.7.1 (A:109-191) Arginine/serine-rich splicing	4e-07
d1whwa_	99	d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm	7e-07
d2cpza1	102	d.58.7.1 (A:383-484) CUG triplet repeat RNA-bindin	1e-06
d2cpja1	86	d.58.7.1 (A:65-150) Non-POU domain-containing octa	1e-06
d2cpxa1	102	d.58.7.1 (A:291-392) RNA-binding protein 41, RBM41	1e-06
d2cq0a1	90	d.58.7.1 (A:231-320) Eukaryotic translation initia	1e-06
d2cqba1	89	d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomer	2e-06
d1fxla1	82	d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Hom	2e-06
d2cqia1	90	d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sa	4e-06
d2cpfa1	85	d.58.7.1 (A:362-446) Probable RNA-binding protein	4e-06
d1wf2a_	98	d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprot	4e-06
d1u6fa1	139	d.58.7.1 (A:1-139) RNA-binding protein UBP1 {Trypa	5e-06
U2AF35 (35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]} Length = 104" target="_blank" href="http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?sid=d1jmta_">d1jmta_	104	d.58.7.3 (A:) 5e-06
d2u2fa_	85	d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit	5e-06
d1x4ga1	96	d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo s	9e-06
d2cpha1	94	d.58.7.1 (A:454-547) Probable RNA-binding protein	2e-05
d2ghpa1	81	d.58.7.1 (A:116-196) U4/U6 snRNA-associated-splici	4e-05
d2cq3a1	93	d.58.7.1 (A:110-202) RNA-binding protein 9 {Human	9e-05
d1x5ta1	83	d.58.7.1 (A:8-90) Splicing factor 3B subunit 4 {Hu	1e-04
d1fjca_	96	d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocrice	1e-04
d2cpea1	101	d.58.7.1 (A:353-453) RNA-binding protein EWS {Huma	1e-04
d1x4da1	89	d.58.7.1 (A:8-96) Matrin 3 {Mouse (Mus musculus) [	1e-04
d2msta_	75	d.58.7.1 (A:) Neural RNA-binding protein Musashi-1	2e-04
d1x4aa1	95	d.58.7.1 (A:9-103) Splicing factor, arginine/serin	3e-04
d1cvja2	89	d.58.7.1 (A:91-179) Poly(A)-binding protein {Human	3e-04
d1nu4a_	91	d.58.7.1 (A:) Splicesomal U1A protein {Human (Homo	4e-04
d1uawa_	77	d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [Tax	8e-04
d1p1ta_	104	d.58.7.1 (A:) Cleavage stimulation factor, 64 kda	0.001
d1x5sa1	90	d.58.7.1 (A:8-97) Cold-inducible RNA-binding prote	0.001
d2cpda1	86	d.58.7.1 (A:223-308) APOBEC1 stimulating protein {	0.002
d2cq4a1	101	d.58.7.1 (A:132-232) RNA binding protein 23 {Human	0.003
d2disa1	96	d.58.7.1 (A:8-103) Hypothetical protein FLJ20273 {	0.004
d1x4ba1	103	d.58.7.1 (A:8-110) Heterogeneous nuclear ribonucle	0.004

>d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: CBP20, 20KDa nuclear cap-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.3 bits (120), Expect = 4e-09
 Identities = 14/85 (16%), Positives = 35/85 (41%)

Query: 18  DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARF 77
            +S  L V N+      + + +LF+  GDI++      +         F+++   ++A  
Sbjct: 5   KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAEN 64

Query: 78  AKRKLDEFVFLGNRLKVSYASQFES 102
           A R ++        ++  + + F+ 
Sbjct: 65  AMRYINGTRLDDRIIRTDWDAGFKE 89

>d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila melanogaster [TaxId: 7227]} Length = 82

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Sex-lethal protein
species: Drosophila melanogaster [TaxId: 7227]

 Score = 49.6 bits (118), Expect = 5e-09
 Identities = 22/75 (29%), Positives = 31/75 (41%)

Query: 23 LIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKL 82
          LIV  +P      +L  LF   G I  C+ M            F+ F    +++ A + L
Sbjct: 5  LIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVL 64

Query: 83 DEFVFLGNRLKVSYA 97
          +       RLKVSYA
Sbjct: 65 NGITVRNKRLKVSYA 79

>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo sapiens) [TaxId: 9606]} Length = 80

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Poly(A)-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.6 bits (113), Expect = 2e-08
 Identities = 11/77 (14%), Positives = 29/77 (37%)

Query: 23 LIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKL 82
          L V ++        L + F+  G I   +              ++ F+  ++A  A   +
Sbjct: 3  LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 62

Query: 83 DEFVFLGNRLKVSYASQ 99
          +  V  G  +++ ++ +
Sbjct: 63 NFDVIKGKPVRIMWSQR 79

>d1x5ua1 d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor 3B subunit 4
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.7 bits (113), Expect = 4e-08
 Identities = 14/82 (17%), Positives = 29/82 (35%)

Query: 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARF 77
          ++   + V  +        L +LF   G +                  F++F    +A +
Sbjct: 7  NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADY 66

Query: 78 AKRKLDEFVFLGNRLKVSYASQ 99
          A + +D     G  ++V+ AS 
Sbjct: 67 AIKIMDMIKLYGKPIRVNKASA 88

>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14 {Human (Homo sapiens) [TaxId: 9606]} Length = 114

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Pre-mRNA branch site protein p14
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.1 bits (114), Expect = 4e-08
 Identities = 18/103 (17%), Positives = 41/103 (39%), Gaps = 3/103 (2%)

Query: 18  DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARF 77
           + +R L +RN+P     +++  +F  YG I + +  +  +        ++ +    +A+ 
Sbjct: 5   EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGT---AYVVYEDIFDAKN 61

Query: 78  AKRKLDEFVFLGNRLKVSYASQFESLADTKDKLETRRKEVLAR 120
           A   L  F      L V Y +   +      K +  + ++L  
Sbjct: 62  ACDHLSGFNVCNRYLVVLYYNANRAFQKMDTKKKEEQLKLLKE 104

>d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila melanogaster [TaxId: 7227]} Length = 85

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Sex-lethal protein
species: Drosophila melanogaster [TaxId: 7227]

 Score = 46.5 bits (110), Expect = 7e-08
 Identities = 19/77 (24%), Positives = 30/77 (38%), Gaps = 2/77 (2%)

Query: 23 LIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKL 82
          L V N+P     D L  +F  YG I +   +  +       V F+++     A+ A   L
Sbjct: 9  LYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISAL 68

Query: 83 DEFVFLGN--RLKVSYA 97
          +  +  G    L V  A
Sbjct: 69 NNVIPEGGSQPLSVRLA 85

>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus) [TaxId: 10090]} Length = 78

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear factor Aly
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.7 bits (108), Expect = 1e-07
 Identities = 12/76 (15%), Positives = 29/76 (38%), Gaps = 1/76 (1%)

Query: 23 LIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKL 82
          L+V N+       D+ +LFA +G +++                 + F   ++A  A ++ 
Sbjct: 3  LLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGT-ADVHFERKADALKAMKQY 61

Query: 83 DEFVFLGNRLKVSYAS 98
          +     G  + +   +
Sbjct: 62 NGVPLDGRPMNIQLVT 77

>d1rk8a_ d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 88

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 8
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 45.1 bits (106), Expect = 3e-07
 Identities = 14/79 (17%), Positives = 29/79 (36%)

Query: 19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFA 78
          E   L V ++      D++ + F  YG+I+                  +++     A  A
Sbjct: 6  EGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAA 65

Query: 79 KRKLDEFVFLGNRLKVSYA 97
          K  L+    +G  ++V + 
Sbjct: 66 KEALNGAEIMGQTIQVDWC 84

>d1fxla2 d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Hu antigen D (Hud)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.7 bits (105), Expect = 4e-07
 Identities = 19/77 (24%), Positives = 31/77 (40%), Gaps = 2/77 (2%)

Query: 23 LIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKL 82
          L V  +P      +L +LF+ YG I   + +  +       V FI+F     A  A + L
Sbjct: 9  LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 68

Query: 83 DEFVFLGN--RLKVSYA 97
          +     G    + V +A
Sbjct: 69 NGQKPSGATEPITVKFA 85

>d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor 10 {Human (Homo sapiens) [TaxId: 9606]} Length = 83

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Arginine/serine-rich splicing factor 10
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.3 bits (104), Expect = 4e-07
 Identities = 17/77 (22%), Positives = 32/77 (41%)

Query: 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARF 77
          D +  L V  +       DL ++F+ YG I +   +  +         F+ F    +A+ 
Sbjct: 7  DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKE 66

Query: 78 AKRKLDEFVFLGNRLKV 94
          AK + +     G R++V
Sbjct: 67 AKERANGMELDGRRIRV 83

>d1whwa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]} Length = 99

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.3 bits (104), Expect = 7e-07
 Identities = 23/80 (28%), Positives = 32/80 (40%)

Query: 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARF 77
            S  L VRN+      +DL KLF+ YG + E                F+ F    +A  
Sbjct: 6  SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVK 65

Query: 78 AKRKLDEFVFLGNRLKVSYA 97
          A  ++D  VF G  L V  +
Sbjct: 66 AYAEVDGQVFQGRMLHVLPS 85

>d2cpza1 d.58.7.1 (A:383-484) CUG triplet repeat RNA-binding protein 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: CUG triplet repeat RNA-binding protein 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.5 bits (102), Expect = 1e-06
 Identities = 18/93 (19%), Positives = 38/93 (40%), Gaps = 10/93 (10%)

Query: 5  KDEPPGVRVYTVCDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDV 64
          K+ P G  ++          + ++P      DLL++F  +G++   K    +  +     
Sbjct: 13 KEGPEGANLF----------IYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCF 62

Query: 65 YFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97
           F+ +    +A+ A + ++ F     RLKV   
Sbjct: 63 GFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLK 95

>d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing octamer-binding protein, NonO {Mouse (Mus musculus) [TaxId: 10090]} Length = 86

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Non-POU domain-containing octamer-binding protein, NonO
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.0 bits (101), Expect = 1e-06
 Identities = 23/81 (28%), Positives = 33/81 (40%), Gaps = 6/81 (7%)

Query: 23  LIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKL 82
           L V N+P     +++ KLF  YG   E                FI+    + A  AK +L
Sbjct: 11  LFVGNLPPDITEEEMRKLFEKYGKAGEV------FIHKDKGFGFIRLETRTLAEIAKVEL 64

Query: 83  DEFVFLGNRLKVSYASQFESL 103
           D     G +L+V +A    SL
Sbjct: 65  DNMPLRGKQLRVRFACHSASL 85

>d2cpxa1 d.58.7.1 (A:291-392) RNA-binding protein 41, RBM41 {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 41, RBM41
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.6 bits (102), Expect = 1e-06
 Identities = 17/97 (17%), Positives = 34/97 (35%), Gaps = 7/97 (7%)

Query: 1  MPRYKDEPPGVRVYTVCDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDP 60
          +P +    PG       + ++ L ++N+       DL+ LFA + + +            
Sbjct: 6  IPMFSSYNPG-------EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGR 58

Query: 61 FTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97
               FI F     A  A   ++ +   G  L + + 
Sbjct: 59 MRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFG 95

>d2cq0a1 d.58.7.1 (A:231-320) Eukaryotic translation initiation factor 3 subunit 4 {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Eukaryotic translation initiation factor 3 subunit 4
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.1 bits (101), Expect = 1e-06
 Identities = 18/80 (22%), Positives = 29/80 (36%)

Query: 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARF 77
          D++  + V N+       DL +LF  +G I        +         FI F    +A  
Sbjct: 6  DDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAAR 65

Query: 78 AKRKLDEFVFLGNRLKVSYA 97
          A   +  F +    L V +A
Sbjct: 66 AIAGVSGFGYDHLILNVEWA 85

>d2cqba1 d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomerase E, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 89

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Peptidyl-prolyl cis-trans isomerase E, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.1 bits (101), Expect = 2e-06
 Identities = 17/78 (21%), Positives = 31/78 (39%)

Query: 20 SRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAK 79
           R L V  +        L   F  +GDI + +     + +      F++F L  +A  A 
Sbjct: 5  KRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAI 64

Query: 80 RKLDEFVFLGNRLKVSYA 97
            ++E    G  ++V+ A
Sbjct: 65 DNMNESELFGRTIRVNLA 82

>d1fxla1 d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9606]} Length = 82

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Hu antigen D (Hud)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.8 bits (100), Expect = 2e-06
 Identities = 20/75 (26%), Positives = 32/75 (42%)

Query: 23 LIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKL 82
          LIV  +P     ++   LF + G+IE CK +  +         F+ +    +A  A   L
Sbjct: 5  LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 64

Query: 83 DEFVFLGNRLKVSYA 97
          +        +KVSYA
Sbjct: 65 NGLRLQTKTIKVSYA 79

>d2cqia1 d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolysin TIAR
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.0 bits (98), Expect = 4e-06
 Identities = 19/81 (23%), Positives = 36/81 (44%), Gaps = 2/81 (2%)

Query: 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARF 77
           + R L V N+        +L+LF+  G  + CK +   +        F++F    +A  
Sbjct: 6  GQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMIT--EHTSNDPYCFVEFYEHRDAAA 63

Query: 78 AKRKLDEFVFLGNRLKVSYAS 98
          A   ++    LG  +KV++A+
Sbjct: 64 ALAAMNGRKILGKEVKVNWAT 84

>d2cpfa1 d.58.7.1 (A:362-446) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]} Length = 85

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.6 bits (97), Expect = 4e-06
 Identities = 14/78 (17%), Positives = 31/78 (39%), Gaps = 3/78 (3%)

Query: 23 LIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSN---ARFAK 79
          L ++N+      + L  +F+  G I+ C     ++           F  +     A+ A 
Sbjct: 1  LFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKAL 60

Query: 80 RKLDEFVFLGNRLKVSYA 97
          ++L      G++L+V  +
Sbjct: 61 KQLQGHTVDGHKLEVRIS 78

>d1wf2a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoproteins C1/C2 {Human (Homo sapiens) [TaxId: 9606]} Length = 98

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoproteins C1/C2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.8 bits (98), Expect = 4e-06
 Identities = 16/81 (19%), Positives = 31/81 (38%), Gaps = 9/81 (11%)

Query: 18 DESRYLIVRNVPSLGCGDDLLK-LFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNAR 76
            +  + + N+ +L      ++ +F+ YG I  C               F+++    NAR
Sbjct: 13 SMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHK--------GFAFVQYVNERNAR 64

Query: 77 FAKRKLDEFVFLGNRLKVSYA 97
           A    D  +  G  L ++ A
Sbjct: 65 AAVAGEDGRMIAGQVLDINLA 85

>d1u6fa1 d.58.7.1 (A:1-139) RNA-binding protein UBP1 {Trypanosoma cruzi [TaxId: 5693]} Length = 139

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein UBP1
species: Trypanosoma cruzi [TaxId: 5693]

 Score = 42.6 bits (99), Expect = 5e-06
 Identities = 28/98 (28%), Positives = 45/98 (45%)

Query: 1   MPRYKDEPPGVRVYTVCDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDP 60
             + +   P  ++    D  R L+V  +P+      L +LF  YG IE  K +   +   
Sbjct: 23  QQQQQQHIPPTQMNPEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQ 82

Query: 61  FTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYAS 98
                F+KF+  S+A+ A   L+ F  L  RLKV+ A+
Sbjct: 83  SRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALAA 120

>d1jmta_ d.58.7.3 (A:) U2AF35 (35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Splicing factor U2AF subunits
domain: U2AF35 (35 KDa subunit)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.9 bits (98), Expect = 5e-06
 Identities = 14/62 (22%), Positives = 25/62 (40%), Gaps = 1/62 (1%)

Query: 35  DDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKV 94
           +   ++   YG++EE    D        +V ++KFR   +A  A   L+   F G  +  
Sbjct: 42  EVFTEMEEKYGEVEEMNVCDNLGDHLVGNV-YVKFRREEDAEKAVIDLNNRWFNGQPIHA 100

Query: 95  SY 96
             
Sbjct: 101 EL 102

>d2u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor U2AF 65 KDa subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.2 bits (96), Expect = 5e-06
 Identities = 12/79 (15%), Positives = 28/79 (35%)

Query: 20 SRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAK 79
          +  L +  +P+    D + +L  ++G ++    +            F ++   +    A 
Sbjct: 1  AHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAI 60

Query: 80 RKLDEFVFLGNRLKVSYAS 98
            L+       +L V  AS
Sbjct: 61 AGLNGMQLGDKKLLVQRAS 79

>d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolysin TIAR
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (96), Expect = 9e-06
 Identities = 12/79 (15%), Positives = 29/79 (36%), Gaps = 6/79 (7%)

Query: 19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFA 78
          ++  +    + S      + + F+ +G I E +        P     F++F    +A  A
Sbjct: 17 KNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVF------PEKGYSFVRFSTHESAAHA 70

Query: 79 KRKLDEFVFLGNRLKVSYA 97
             ++     G+ +K  + 
Sbjct: 71 IVSVNGTTIEGHVVKCYWG 89

>d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]} Length = 94

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.9 bits (93), Expect = 2e-05
 Identities = 18/83 (21%), Positives = 36/83 (43%), Gaps = 2/83 (2%)

Query: 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECK-PMDAEDCDPFTDVYFIKFRLFSNAR 76
            +  ++VRN+P      ++ +LF+T+G+++  + P             F+ F    +A+
Sbjct: 6  QTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAK 65

Query: 77 FAKRKL-DEFVFLGNRLKVSYAS 98
           A   L       G RL + +A 
Sbjct: 66 KAFNALCHSTHLYGRRLVLEWAD 88

>d2ghpa1 d.58.7.1 (A:116-196) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 81

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: U4/U6 snRNA-associated-splicing factor PRP24
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.6 bits (89), Expect = 4e-05
 Identities = 11/75 (14%), Positives = 23/75 (30%)

Query: 23 LIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKL 82
          L + N P      ++  L      +     + +   +      +I      +AR+   KL
Sbjct: 4  LWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKL 63

Query: 83 DEFVFLGNRLKVSYA 97
          +     G  L    +
Sbjct: 64 NGLKIEGYTLVTKVS 78

>d2cq3a1 d.58.7.1 (A:110-202) RNA-binding protein 9 {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 9
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.1 bits (88), Expect = 9e-05
 Identities = 19/80 (23%), Positives = 36/80 (45%), Gaps = 2/80 (2%)

Query: 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARF 77
             + L V N+P      DL ++F  +G I + + +   +        F+ F   ++A  
Sbjct: 9  STPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIF--NERGSKGFGFVTFENSADADR 66

Query: 78 AKRKLDEFVFLGNRLKVSYA 97
          A+ KL   V  G +++V+ A
Sbjct: 67 AREKLHGTVVEGRKIEVNNA 86

>d1x5ta1 d.58.7.1 (A:8-90) Splicing factor 3B subunit 4 {Human (Homo sapiens) [TaxId: 9606]} Length = 83

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor 3B subunit 4
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.8 bits (87), Expect = 1e-04
 Identities = 17/76 (22%), Positives = 27/76 (35%), Gaps = 1/76 (1%)

Query: 23 LIVRNVPSLGCGDDLLKLFATYGDIEEC-KPMDAEDCDPFTDVYFIKFRLFSNARFAKRK 81
          + + N+        L   F+ +G I +  K M   D        FI F  F  +  A   
Sbjct: 1  IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEA 60

Query: 82 LDEFVFLGNRLKVSYA 97
          ++        + VSYA
Sbjct: 61 MNGQYLCNRPITVSYA 76

>d1fjca_ d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocricetus auratus) [TaxId: 10036]} Length = 96

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolin
species: Golden hamster (Mesocricetus auratus) [TaxId: 10036]

 Score = 37.7 bits (87), Expect = 1e-04
 Identities = 11/79 (13%), Positives = 28/79 (35%), Gaps = 5/79 (6%)

Query: 19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFA 78
           +R L+ +N+      D+L ++F         +            + +I+F+  ++A   
Sbjct: 15 AARTLLAKNLSFNITEDELKEVFEDA-----LEIRLVSQDGKSKGIAYIEFKSEADAEKN 69

Query: 79 KRKLDEFVFLGNRLKVSYA 97
            +       G  + + Y 
Sbjct: 70 LEEKQGAEIDGRSVSLYYT 88

>d2cpea1 d.58.7.1 (A:353-453) RNA-binding protein EWS {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein EWS
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.8 bits (87), Expect = 1e-04
 Identities = 18/87 (20%), Positives = 31/87 (35%), Gaps = 8/87 (9%)

Query: 19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTD--------VYFIKFR 70
          ++  + V+ +      DDL   F   G ++  K         + D           + + 
Sbjct: 7  DNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYE 66

Query: 71 LFSNARFAKRKLDEFVFLGNRLKVSYA 97
              A+ A    D   F G++LKVS A
Sbjct: 67 DPPTAKAAVEWFDGKDFQGSKLKVSLA 93

>d1x4da1 d.58.7.1 (A:8-96) Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 89

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Matrin 3
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.4 bits (86), Expect = 1e-04
 Identities = 9/87 (10%), Positives = 26/87 (29%), Gaps = 5/87 (5%)

Query: 18  DESRYLIVRNVPSLGCG-DDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNAR 76
           +  R + + +          LL+L   +G I     +             +     + A 
Sbjct: 6   ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLIL----NKINEAFIEMATTEDAQAA 61

Query: 77  FAKRKLDEFVFLGNRLKVSYASQFESL 103
                    +  G  ++V  + +++ +
Sbjct: 62  VDYYTTTPALVFGKPVRVHLSQKYKRI 88

>d2msta_ d.58.7.1 (A:) Neural RNA-binding protein Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 75

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Neural RNA-binding protein Musashi-1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.2 bits (83), Expect = 2e-04
 Identities = 8/75 (10%), Positives = 23/75 (30%), Gaps = 1/75 (1%)

Query: 23 LIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKL 82
          + V  +      +D+   F  +G +++   M  +  +      F+ F           ++
Sbjct: 2  IFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVC-EI 60

Query: 83 DEFVFLGNRLKVSYA 97
                   ++   A
Sbjct: 61 HFHEINNKMVECKKA 75

>d1x4aa1 d.58.7.1 (A:9-103) Splicing factor, arginine/serine-rich 1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor, arginine/serine-rich 1, SFRS1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.0 bits (85), Expect = 3e-04
 Identities = 19/80 (23%), Positives = 33/80 (41%), Gaps = 3/80 (3%)

Query: 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARF 77
          +    + V N+P      D+  +F  YG I +    +     PF    F++F    +A  
Sbjct: 12 NNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPF---AFVEFEDPRDAED 68

Query: 78 AKRKLDEFVFLGNRLKVSYA 97
          A    D + + G RL+V + 
Sbjct: 69 AVYGRDGYDYDGYRLRVEFP 88

>d1cvja2 d.58.7.1 (A:91-179) Poly(A)-binding protein {Human (Homo sapiens) [TaxId: 9606]} Length = 89

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Poly(A)-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.6 bits (84), Expect = 3e-04
 Identities = 14/75 (18%), Positives = 29/75 (38%), Gaps = 2/75 (2%)

Query: 23 LIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKL 82
          + ++N+        L   F+ +G+I  CK +   D +      F+ F     A  A  K+
Sbjct: 11 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVC--DENGSKGYGFVHFETQEAAERAIEKM 68

Query: 83 DEFVFLGNRLKVSYA 97
          +  +    ++ V   
Sbjct: 69 NGMLLNDRKVFVGRF 83

>d1nu4a_ d.58.7.1 (A:) Splicesomal U1A protein {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicesomal U1A protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.2 bits (83), Expect = 4e-04
 Identities = 17/82 (20%), Positives = 33/82 (40%), Gaps = 7/82 (8%)

Query: 20 SRYLIVRNVPSLGCGDDLLK----LFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNA 75
          +  + + N+      D+L K    +F+ +G I +                F+ F+  S+A
Sbjct: 3  NHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSA 59

Query: 76 RFAKRKLDEFVFLGNRLKVSYA 97
            A R +  F F    +++ YA
Sbjct: 60 TNALRSMQGFPFYDKPMRIQYA 81

>d1uawa_ d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 77

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Musashi-1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.0 bits (80), Expect = 8e-04
 Identities = 9/75 (12%), Positives = 21/75 (28%), Gaps = 1/75 (1%)

Query: 23 LIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKL 82
          + +  +      + L + F  +G+++EC  M            F+ F   +         
Sbjct: 3  MFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKV-LAQ 61

Query: 83 DEFVFLGNRLKVSYA 97
                   +    A
Sbjct: 62 SRHELDSKTIDPKVA 76

>d1p1ta_ d.58.7.1 (A:) Cleavage stimulation factor, 64 kda subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Cleavage stimulation factor, 64 kda subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.1 bits (80), Expect = 0.001
 Identities = 17/80 (21%), Positives = 32/80 (40%)

Query: 19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFA 78
            R + V N+P     + L  +F+  G +   + +   +        F +++    A  A
Sbjct: 7  SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSA 66

Query: 79 KRKLDEFVFLGNRLKVSYAS 98
           R L+   F G  L+V  A+
Sbjct: 67 MRNLNGREFSGRALRVDNAA 86

>d1x5sa1 d.58.7.1 (A:8-97) Cold-inducible RNA-binding protein {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Cold-inducible RNA-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.7 bits (79), Expect = 0.001
 Identities = 15/81 (18%), Positives = 31/81 (38%)

Query: 19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFA 78
          +   L V  +        L ++F+ YG I E   +   +        F+ F    +A+ A
Sbjct: 4  DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63

Query: 79 KRKLDEFVFLGNRLKVSYASQ 99
             ++     G +++V  A +
Sbjct: 64 MMAMNGKSVDGRQIRVDQAGK 84

>d2cpda1 d.58.7.1 (A:223-308) APOBEC1 stimulating protein {Human (Homo sapiens) [TaxId: 9606]} Length = 86

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: APOBEC1 stimulating protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.2 bits (78), Expect = 0.002
 Identities = 16/80 (20%), Positives = 29/80 (36%), Gaps = 6/80 (7%)

Query: 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARF 77
             + L VRN+      + + K F         +           D  F+ F    +A  
Sbjct: 6  SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVER------VKKIRDYAFVHFSNREDAVE 59

Query: 78 AKRKLDEFVFLGNRLKVSYA 97
          A + L+  V  G+ ++V+ A
Sbjct: 60 AMKALNGKVLDGSPIEVTLA 79

>d2cq4a1 d.58.7.1 (A:132-232) RNA binding protein 23 {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA binding protein 23
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.8 bits (77), Expect = 0.003
 Identities = 10/79 (12%), Positives = 28/79 (35%), Gaps = 1/79 (1%)

Query: 19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFA 78
          ++R +    + +     DL   F+  G + + + +   +      + +++F    +    
Sbjct: 17 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVP-L 75

Query: 79 KRKLDEFVFLGNRLKVSYA 97
             L     LG  + V  +
Sbjct: 76 AIGLTGQRLLGVPIIVQAS 94

>d2disa1 d.58.7.1 (A:8-103) Hypothetical protein FLJ20273 {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Hypothetical protein FLJ20273
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.5 bits (76), Expect = 0.004
 Identities = 15/79 (18%), Positives = 33/79 (41%), Gaps = 4/79 (5%)

Query: 23 LIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYF--IKFRLFSNARFAKR 80
          L +  +P +   +++L+  A   +      + A   D   +  F  +++     A  A+R
Sbjct: 4  LFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARR 63

Query: 81 KLD--EFVFLGNRLKVSYA 97
          KL        G+++ V +A
Sbjct: 64 KLMPGRIQLWGHQIAVDWA 82

>d1x4ba1 d.58.7.1 (A:8-110) Heterogeneous nuclear ribonucleoproteins A2/B1 {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoproteins A2/B1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.5 bits (76), Expect = 0.004
 Identities = 11/80 (13%), Positives = 24/80 (30%), Gaps = 1/80 (1%)

Query: 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARF 77
          ++ R L +  +      + L   +  +G + +C  M            F+ F   +    
Sbjct: 18 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDA 77

Query: 78 AKRKLDEFVFLGNRLKVSYA 97
          A          G  ++   A
Sbjct: 78 AM-AARPHSIDGRVVEPKRA 96

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	230
d1b7fa1	82	Sex-lethal protein {Drosophila melanogaster [TaxId	99.9
d1h2vz_	93	CBP20, 20KDa nuclear cap-binding protein {Human (H	99.9
d1fxla1	82	Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9	99.89
d2cqba1	89	Peptidyl-prolyl cis-trans isomerase E, N-terminal	99.89
d2cq0a1	90	Eukaryotic translation initiation factor 3 subunit	99.89
d1rk8a_	88	RNA-binding protein 8 {Fruit fly (Drosophila melan	99.89
d1cvja1	80	Poly(A)-binding protein {Human (Homo sapiens) [Tax	99.89
d1b7fa2	85	Sex-lethal protein {Drosophila melanogaster [TaxId	99.88
d1fxla2	85	Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9	99.88
d1x5ua1	93	Splicing factor 3B subunit 4 {Human (Homo sapiens)	99.88
d2cpha1	94	Probable RNA-binding protein 19, Rbm19 {Mouse (Mus	99.88
d2u2fa_	85	Splicing factor U2AF 65 KDa subunit {Human (Homo s	99.88
d2cqca1	83	Arginine/serine-rich splicing factor 10 {Human (Ho	99.88
d1whwa_	99	Probable RNA-binding protein 19, Rbm19 {Mouse (Mus	99.87
d1p1ta_	104	Cleavage stimulation factor, 64 kda subunit {Human	99.87
d2cpza1	102	CUG triplet repeat RNA-binding protein 1 {Human (H	99.87
d1x5sa1	90	Cold-inducible RNA-binding protein {Human (Homo sa	99.87
d2f9da1	114	Pre-mRNA branch site protein p14 {Human (Homo sapi	99.87
d2cpfa1	85	Probable RNA-binding protein 19, Rbm19 {Mouse (Mus	99.86
d1x5ta1	83	Splicing factor 3B subunit 4 {Human (Homo sapiens)	99.86
d1u6fa1	139	RNA-binding protein UBP1 {Trypanosoma cruzi [TaxId	99.86
d2cpxa1	102	RNA-binding protein 41, RBM41 {Human (Homo sapiens	99.86
d1no8a_	78	Nuclear factor Aly {Mouse (Mus musculus) [TaxId: 1	99.86
d2cqga1	90	TAR DNA-binding protein 43, TDP-43 {Human (Homo sa	99.86
d2ghpa1	81	U4/U6 snRNA-associated-splicing factor PRP24 {Bake	99.86
d2cqia1	90	Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 960	99.85
d1l3ka1	84	Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human	99.85
d2cq4a1	101	RNA binding protein 23 {Human (Homo sapiens) [TaxI	99.84
d1cvja2	89	Poly(A)-binding protein {Human (Homo sapiens) [Tax	99.84
d2cq3a1	93	RNA-binding protein 9 {Human (Homo sapiens) [TaxId	99.84
d1l3ka2	79	Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human	99.84
d2cpea1	101	RNA-binding protein EWS {Human (Homo sapiens) [Tax	99.84
d2ghpa3	86	U4/U6 snRNA-associated-splicing factor PRP24 {Bake	99.84
d1x4ha1	98	RNA-binding protein 28 {Mouse (Mus musculus) [TaxI	99.84
d1uawa_	77	Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]}	99.84
d2cqda1	103	RNA-binding region containing protein 1 {Human (Ho	99.84
d1hd0a_	75	Heterogeneous nuclear ribonucleoprotein d0 {Human	99.84
d1nu4a_	91	Splicesomal U1A protein {Human (Homo sapiens) [Tax	99.83
d1x4ba1	103	Heterogeneous nuclear ribonucleoproteins A2/B1 {Hu	99.83
d2msta_	75	Neural RNA-binding protein Musashi-1 {Mouse (Mus m	99.83
d2cpia1	89	E3 ubiquitin protein ligase CNOT4 {Mouse (Mus musc	99.83
d1whxa_	111	Probable RNA-binding protein 19, Rbm19 {Mouse (Mus	99.83
d1x4aa1	95	Splicing factor, arginine/serine-rich 1, SFRS1 {Hu	99.83
d2b0ga1	83	Splicesomal U1A protein {Drosophila melanogaster [	99.82
d2adca1	109	Polypyrimidine tract-binding protein {Human (Homo	99.82
d2cpja1	86	Non-POU domain-containing octamer-binding protein,	99.82
d1x5oa1	101	RNA-binding motif, single-stranded-interacting pro	99.82
d1x0fa1	75	Nuclear ribonucleoprotein D0 (AUF1) {Human (Homo s	99.81
d1x4ga1	96	Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 960	99.81
d1zh5a2	85	Lupus LA protein {Human (Homo sapiens) [TaxId: 960	99.81
d2adca2	88	Polypyrimidine tract-binding protein {Human (Homo	99.81
d1x4ea1	72	RNA-binding motif, single-stranded-interacting pro	99.81
d2disa1	96	Hypothetical protein FLJ20273 {Human (Homo sapiens	99.79
d2bz2a1	79	Negative elongation factor E, NELF-E {Human (Homo	99.79
d2cpda1	86	APOBEC1 stimulating protein {Human (Homo sapiens)	99.79
d2cqpa1	86	RNA-binding protein 12 {Mouse (Mus musculus) [TaxI	99.79
d1fjeb1	91	Nucleolin {Golden hamster (Mesocricetus auratus) [	99.79
d1wf2a_	98	Heterogeneous nuclear ribonucleoproteins C1/C2 {Hu	99.78
d1wg1a_	88	Probable RNA-binding protein KIAA1579 {Human (Homo	99.78
d2cqha1	80	IGF-II mRNA-binding protein 2 isoform A {Human (Ho	99.78
d1whya_	97	Putative RNA-binding protein 15B, Rbm15b {Mouse (M	99.78
d2cpya1	103	RNA-binding protein 12 {Human (Homo sapiens) [TaxI	99.78
d1fjca_	96	Nucleolin {Golden hamster (Mesocricetus auratus) [	99.78
d2cq1a1	88	Polypyrimidine tract-binding protein 2, PTBP2 {Hum	99.78
d2adba1	108	Polypyrimidine tract-binding protein {Human (Homo	99.77
d3begb1	87	Splicing factor, arginine/serine-rich 1, SFRS1 {Hu	99.77
d1wi8a_	104	Eukaryotic translation initiation factor 4B {Human	99.77
d1wi6a1	75	Ribonucleoprotein PTB-binding 1, Raver-1 {Mouse (M	99.76
d2ghpa2	75	U4/U6 snRNA-associated-splicing factor PRP24 {Bake	99.76
d1x4da1	89	Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]}	99.76
d1wf0a_	88	TAR DNA-binding protein 43, TDP-43 {Human (Homo sa	99.76
d1wg5a_	104	Heterogeneous nuclear ribonucleoprotein H' {Human	99.76
d1x4fa1	99	Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]}	99.75
d1wexa_	104	Heterogeneous nuclear ribonucleoprotein L-like {Mo	99.75
d1wg4a_	98	Splicing factor, arginine/serine-rich 9 (SFRS9) {M	99.75
d1u1qa_	183	Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human	99.74
d1wela1	112	RNA-binding protein 12 {Human (Homo sapiens) [TaxI	99.74
d1weza_	102	Heterogeneous nuclear ribonucleoprotein H' {Human	99.73
d1weya_	104	Calcipressin-1 {Mouse (Mus musculus) [TaxId: 10090	99.71
U2AF35 (35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]}" target="_blank" href="http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?sid=d1jmta_">d1jmta_	104	U2	99.71
d1u2fa_	90	Splicing factor U2AF 65 KDa subunit {Human (Homo s	99.7
d2cq2a1	101	Alkylation repair AlkB homolog 8, ALKBH8 {Human (H	99.64
d1u1qa_	183	Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human	99.64
d1owxa_	113	Lupus LA protein {Human (Homo sapiens) [TaxId: 960	99.62
d2dita1	99	HIV Tat-specific factor 1 {Human (Homo sapiens) [T	99.59
d1o0pa_	104	Splicing factor U2AF 65 KDa subunit {Human (Homo s	99.58
d1wwha1	81	Nucleoporin 35 {Mouse (Mus musculus) [TaxId: 10090	99.41
d1uw4a_	91	RNA processing protein UPF3x, RRM domain {Human (H	97.73
d2dgxa1	73	Limkain-b1, LKAP {Human (Homo sapiens) [TaxId: 960	97.62
d1ufwa_	95	Synaptojanin 2 {Human (Homo sapiens) [TaxId: 9606]	97.11
d1whva_	100	Poly(A)-specific ribonuclease PARN {Mouse (Mus mus	93.67

>d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila melanogaster [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Sex-lethal protein
species: Drosophila melanogaster [TaxId: 7227]

Probab=99.90  E-value=5.6e-24  Score=153.72  Aligned_cols=79  Identities=28%  Similarity=0.364  Sum_probs=76.9

Q ss_pred             CCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEecC
Q 026963           20 SRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYAS   98 (230)
Q Consensus        20 S~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA~   98 (230)
                      +++|||+|||..+++++|.++|++||+|.+|+++.++.++.++|||||+|.+.++|..|++.|||..+.|++|+|+||+
T Consensus         2 ~t~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~ai~~lng~~~~g~~l~v~~a~   80 (82)
T d1b7fa1           2 NTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR   80 (82)
T ss_dssp             CSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeeeeecccCCccccceEEECCHHHHHHHHHHhCCCEECCEEEEEEEcC
Confidence            5789999999999999999999999999999999999999999999999999999999999999999999999999995

>d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: CBP20, 20KDa nuclear cap-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1.4e-23  Score=156.42  Aligned_cols=86  Identities=16%  Similarity=0.202  Sum_probs=81.5

Q ss_pred             ccCCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEE
Q 026963           16 VCDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVS   95 (230)
Q Consensus        16 v~~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~Vs   95 (230)
                      +..+|.+|||+|||+.+++++|+++|++||+|.+|.++.++.++.++|||||+|.+.++|..|++.|||..+.|++|+|+
T Consensus         3 ~~~~s~tlfV~nlp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~gr~i~V~   82 (93)
T d1h2vz_           3 LLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTD   82 (93)
T ss_dssp             TTTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEE
T ss_pred             ccCCCCEEEEeCCCCCCCHHHHHHHHHHHCCcceeccccccccccccceEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence            34678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCCC
Q 026963           96 YASQFE  101 (230)
Q Consensus        96 yA~e~E  101 (230)
                      ||+..+
T Consensus        83 ~a~~~~   88 (93)
T d1h2vz_          83 WDAGFK   88 (93)
T ss_dssp             EESCCC
T ss_pred             EcCCCC
Confidence            997543

>d1fxla1 d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Hu antigen D (Hud)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=1.7e-23  Score=150.82  Aligned_cols=79  Identities=25%  Similarity=0.344  Sum_probs=76.4

Q ss_pred             CeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEecCC
Q 026963           21 RYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYASQ   99 (230)
Q Consensus        21 ~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA~e   99 (230)
                      ++|||+|||..+++++|+++|++||+|.+|+++.+..++.++|||||.|.+.++|..|++.|||..|.|++|+|+||++
T Consensus         3 t~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~AkP   81 (82)
T d1fxla1           3 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP   81 (82)
T ss_dssp             SEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred             CEEEEECCCCCCCHHHHHHHHHHhCCcccccceeeccCCCceeeEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEeeC
Confidence            5799999999999999999999999999999999999999999999999999999999999999999999999999954

>d2cqba1 d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomerase E, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Peptidyl-prolyl cis-trans isomerase E, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=7.1e-24  Score=156.33  Aligned_cols=83  Identities=20%  Similarity=0.291  Sum_probs=79.3

Q ss_pred             CCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963           18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA   97 (230)
Q Consensus        18 ~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA   97 (230)
                      ..+++|||+|||+.+++++|+++|++||+|.+|.++.|+.++.++|||||.|.+.++|..|+..|||..|.|++|+|+||
T Consensus         3 ~~~~tlfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~~~~~kg~afV~f~~~~~A~~ai~~l~~~~i~g~~l~v~~a   82 (89)
T d2cqba1           3 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA   82 (89)
T ss_dssp             CCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred             CCCcEEEEeCCCCcCCHHHHHHHHhhCCeEEecccccccccccccceeEEEECCHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCC
Q 026963           98 SQF  100 (230)
Q Consensus        98 ~e~  100 (230)
                      .+.
T Consensus        83 ~p~   85 (89)
T d2cqba1          83 KPM   85 (89)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            543

>d2cq0a1 d.58.7.1 (A:231-320) Eukaryotic translation initiation factor 3 subunit 4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Eukaryotic translation initiation factor 3 subunit 4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=2.7e-23  Score=153.45  Aligned_cols=83  Identities=22%  Similarity=0.232  Sum_probs=79.2

Q ss_pred             CCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963           18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA   97 (230)
Q Consensus        18 ~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA   97 (230)
                      +++.+|||+|||..+++++|+++|++||+|.+|.++.|+.++.++|||||.|.+.++|..|++.|||..|.|++|+|+||
T Consensus         6 ~~~~~i~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~t~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~a   85 (90)
T d2cq0a1           6 DDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWA   85 (90)
T ss_dssp             SSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred             CCCCEEEEECCCCCCCHHHHHHHHHHhcccccccccccccccccccceeEEECCHHHHHHHHHHhCCCEECCEEEEEEee
Confidence            46778999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCC
Q 026963           98 SQF  100 (230)
Q Consensus        98 ~e~  100 (230)
                      .+.
T Consensus        86 kp~   88 (90)
T d2cq0a1          86 KPS   88 (90)
T ss_dssp             SCC
T ss_pred             eCC
Confidence            543

>d1rk8a_ d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 8
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.89  E-value=3.6e-23  Score=152.42  Aligned_cols=79  Identities=18%  Similarity=0.281  Sum_probs=76.6

Q ss_pred             CCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963           19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA   97 (230)
Q Consensus        19 eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA   97 (230)
                      ++.+|||+|||..+++++|.++|++||+|.+|+++.|+.+++++|||||+|.+.++|+.|+..|||..+.|++|+|+||
T Consensus         6 ~~~~l~V~nL~~~~t~~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~f~~~~~A~~A~~~lng~~l~g~~l~V~~a   84 (88)
T d1rk8a_           6 EGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC   84 (88)
T ss_dssp             -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHcCCcccccccccccccccccceeEEECCHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence            5678999999999999999999999999999999999999999999999999999999999999999999999999999

>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Poly(A)-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=3.6e-23  Score=149.74  Aligned_cols=77  Identities=14%  Similarity=0.120  Sum_probs=75.4

Q ss_pred             eEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEecC
Q 026963           22 YLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYAS   98 (230)
Q Consensus        22 ~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA~   98 (230)
                      +|||+|||+.+++++|.++|++||+|.+|+|+.|+.|++++|||||+|.++++|..|++.|||+.+.|++|+|.||.
T Consensus         2 slfV~nL~~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~aFV~f~~~~~a~~ai~~l~g~~~~gr~i~v~~a~   78 (80)
T d1cvja1           2 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQ   78 (80)
T ss_dssp             EEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHTTSTTCEETTEECEEEECC
T ss_pred             EEEEeCCCCcCCHHHHHHHHHHhCCEeEEEEEecccccCCCCceEEEECCHHHHHHHHHHcCCCEECCEEEEEEEeC
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999993

>d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila melanogaster [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Sex-lethal protein
species: Drosophila melanogaster [TaxId: 7227]

Probab=99.88  E-value=7e-23  Score=149.53  Aligned_cols=79  Identities=24%  Similarity=0.307  Sum_probs=76.1

Q ss_pred             CCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCC--ceeEEEe
Q 026963           19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLG--NRLKVSY   96 (230)
Q Consensus        19 eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~G--r~L~Vsy   96 (230)
                      .+++|||+|||+.+++++|+++|++||+|.+|+++.++.+++++|||||+|.+.++|..|++.|||..+.|  ++|+|.|
T Consensus         5 ~~t~lfV~nlp~~~te~~l~~~F~~~G~i~~~~~~~d~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~V~~   84 (85)
T d1b7fa2           5 KDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRL   84 (85)
T ss_dssp             TTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhhCCEeeeeeecccccccCceeEEEEECCHHHHHHHHHHHCCCEeCCCCeEEEEEE
Confidence            46789999999999999999999999999999999999999999999999999999999999999999987  8899999


Q ss_pred             c
Q 026963           97 A   97 (230)
Q Consensus        97 A   97 (230)
                      |
T Consensus        85 A   85 (85)
T d1b7fa2          85 A   85 (85)
T ss_dssp             C
T ss_pred             C
Confidence            8

>d1fxla2 d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Hu antigen D (Hud)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=7.6e-23  Score=149.81  Aligned_cols=79  Identities=24%  Similarity=0.280  Sum_probs=75.6

Q ss_pred             CCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCC--ceeEEEe
Q 026963           19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLG--NRLKVSY   96 (230)
Q Consensus        19 eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~G--r~L~Vsy   96 (230)
                      .+++|||+|||..+++++|+++|++||+|.+|+++.|+.++.++|||||+|.+.++|..|++.|||..+.|  ++|+|.|
T Consensus         5 k~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kg~afV~f~~~~~a~~Ai~~lng~~~~G~~~~i~V~~   84 (85)
T d1fxla2           5 RDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKF   84 (85)
T ss_dssp             TTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHhCCccccccccccccccCCCeeEEEEcCHHHHHHHHHHhCCCEeCCCCEEEEEEe
Confidence            46789999999999999999999999999999999999999999999999999999999999999999998  5699999


Q ss_pred             c
Q 026963           97 A   97 (230)
Q Consensus        97 A   97 (230)
                      |
T Consensus        85 A   85 (85)
T d1fxla2          85 A   85 (85)
T ss_dssp             C
T ss_pred             C
Confidence            7

>d1x5ua1 d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor 3B subunit 4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=7.4e-23  Score=152.38  Aligned_cols=82  Identities=17%  Similarity=0.204  Sum_probs=78.4

Q ss_pred             CCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963           18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA   97 (230)
Q Consensus        18 ~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA   97 (230)
                      ++.++|||+|||..++++||+++|++||+|.+|+++.++.|+.++|||||+|.+.++|..|++.|||..|.|++|+|.||
T Consensus         7 ~~~~tlfV~nLp~~~t~~~l~~~F~~~G~v~~v~~~~d~~tg~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~A   86 (93)
T d1x5ua1           7 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKA   86 (93)
T ss_dssp             CTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEET
T ss_pred             CCCCEEEEeCCCCcCCHHHHHHHHHHhCCccccceeecccccccccceEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence            44679999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CC
Q 026963           98 SQ   99 (230)
Q Consensus        98 ~e   99 (230)
                      .+
T Consensus        87 ~~   88 (93)
T d1x5ua1          87 SA   88 (93)
T ss_dssp             TT
T ss_pred             CC
Confidence            43

>d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.88  E-value=8.9e-23  Score=152.21  Aligned_cols=82  Identities=21%  Similarity=0.366  Sum_probs=76.9

Q ss_pred             CCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCC-CCCceeEEEEEEccHhHHHHHHHHh-cCceeCCceeEEE
Q 026963           18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAED-CDPFTDVYFIKFRLFSNARFAKRKL-DEFVFLGNRLKVS   95 (230)
Q Consensus        18 ~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~-tgksrG~AFV~F~d~edA~~A~~~L-nG~~f~Gr~L~Vs   95 (230)
                      .++++|||+|||+.+++++|+++|++||+|.+|+++.++. +|.++|||||.|.+.++|..|++.| ||..|.|++|+|+
T Consensus         6 ~~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~g~~rg~afV~f~~~~~A~~Ai~~l~~~~~~~Gr~l~V~   85 (94)
T d2cpha1           6 QTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLE   85 (94)
T ss_dssp             SCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEEE
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHhCCceEEEEEeccccCCCcccEEEEEECCHHHHHHHHHHccCCcEECCEEEEEE
Confidence            4678899999999999999999999999999999998754 7999999999999999999999998 8999999999999


Q ss_pred             ecCC
Q 026963           96 YASQ   99 (230)
Q Consensus        96 yA~e   99 (230)
                      ||..
T Consensus        86 ~A~~   89 (94)
T d2cpha1          86 WADS   89 (94)
T ss_dssp             ECCC
T ss_pred             EcCC
Confidence            9954

>d2u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor U2AF 65 KDa subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=9.6e-23  Score=149.49  Aligned_cols=78  Identities=15%  Similarity=0.206  Sum_probs=76.0

Q ss_pred             CeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEecC
Q 026963           21 RYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYAS   98 (230)
Q Consensus        21 ~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA~   98 (230)
                      ..|||+|||+.+++++|.++|++||+|.+|+++.|+.||.++|||||+|.++++|..|++.|||+.+.|++|.|.||.
T Consensus         2 ~rlfV~nlp~~~te~~l~~~F~~~G~v~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~a~~~l~~~~l~g~~l~V~~A~   79 (85)
T d2u2fa_           2 HKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRAS   79 (85)
T ss_dssp             CCEEEETCCSSCCSHHHHHHHTSSSCEEEEEEECCCSSSCCCCEEEEEESSSHHHHHHHHTSSSCCCSSSCCEEEECC
T ss_pred             CEEEEECCCCCCCHHHHHHHHHhcCccceEEeeccccccccceeEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence            369999999999999999999999999999999999999999999999999999999999999999999999999995

>d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor 10 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Arginine/serine-rich splicing factor 10
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=9.2e-23  Score=148.03  Aligned_cols=78  Identities=22%  Similarity=0.304  Sum_probs=75.0

Q ss_pred             cCCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEE
Q 026963           17 CDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKV   94 (230)
Q Consensus        17 ~~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~V   94 (230)
                      ++++++|||+|||+.+++++|+++|++||+|.+|.++.++.+++++|||||+|.+.++|..|++.|||+.|.|++|+|
T Consensus         6 p~~~~~l~V~nL~~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gr~i~V   83 (83)
T d2cqca1           6 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV   83 (83)
T ss_dssp             CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCCccccccccccccccccceEEEECCHHHHHHHHHHcCCCEECCEEeEC
Confidence            346789999999999999999999999999999999999999999999999999999999999999999999999987

>d1whwa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.87  E-value=1.7e-22  Score=151.23  Aligned_cols=81  Identities=28%  Similarity=0.308  Sum_probs=77.8

Q ss_pred             CCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963           18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA   97 (230)
Q Consensus        18 ~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA   97 (230)
                      ..+.+|||+|||+.++++||+++|++||+|.+|.++.|+.|+.++|||||+|.+.++|..|++.|||+.|.|++|+|.+|
T Consensus         6 ~~~~~lfV~nL~~~~t~~~l~~~F~~~g~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~A~~~l~g~~~~gr~i~V~~a   85 (99)
T d1whwa_           6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPS   85 (99)
T ss_dssp             CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEEC
T ss_pred             CCCCEEEEECCCCcCCHHHHHHHHHhcCCceeeeecccccccccCcceEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence            34668999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             C
Q 026963           98 S   98 (230)
Q Consensus        98 ~   98 (230)
                      .
T Consensus        86 ~   86 (99)
T d1whwa_          86 T   86 (99)
T ss_dssp             C
T ss_pred             C
Confidence            4

>d1p1ta_ d.58.7.1 (A:) Cleavage stimulation factor, 64 kda subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Cleavage stimulation factor, 64 kda subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=8e-23  Score=154.06  Aligned_cols=80  Identities=21%  Similarity=0.275  Sum_probs=77.1

Q ss_pred             CCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEecCC
Q 026963           20 SRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYASQ   99 (230)
Q Consensus        20 S~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA~e   99 (230)
                      .++|||+|||+.+++++|+++|++||+|.+|.++.++.|++++|||||+|.+.++|..|++.|||..|.|++|+|.||..
T Consensus         8 ~rtl~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~i~V~~a~~   87 (104)
T d1p1ta_           8 LRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAAS   87 (104)
T ss_dssp             HSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETTC
T ss_pred             CCEEEEECCCCcCCHHHHHHhhhccccccccccccccceeccCCceEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999943

>d2cpza1 d.58.7.1 (A:383-484) CUG triplet repeat RNA-binding protein 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: CUG triplet repeat RNA-binding protein 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=1.5e-22  Score=152.95  Aligned_cols=81  Identities=21%  Similarity=0.287  Sum_probs=78.2

Q ss_pred             CCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963           18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA   97 (230)
Q Consensus        18 ~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA   97 (230)
                      .++.+|||+|||+.++++||+++|++||+|.+|.++.+..++.++|||||+|.+.++|..|++.|||+.|.|++|+|+||
T Consensus        16 p~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~g~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~~i~V~~a   95 (102)
T d2cpza1          16 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLK   95 (102)
T ss_dssp             STTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhhccccccceeeecccCCCccceEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             C
Q 026963           98 S   98 (230)
Q Consensus        98 ~   98 (230)
                      .
T Consensus        96 ~   96 (102)
T d2cpza1          96 R   96 (102)
T ss_dssp             C
T ss_pred             C
Confidence            4

>d1x5sa1 d.58.7.1 (A:8-97) Cold-inducible RNA-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Cold-inducible RNA-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=1e-22  Score=149.57  Aligned_cols=83  Identities=18%  Similarity=0.266  Sum_probs=79.3

Q ss_pred             cCCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEe
Q 026963           17 CDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSY   96 (230)
Q Consensus        17 ~~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~Vsy   96 (230)
                      +.++++|||+|||+.++++||.++|++||+|..|.++.+..++.++|||||.|.+.++|..|++.|||+.|.|++|+|.+
T Consensus         2 ~~~~~kifV~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~Ai~~l~~~~~~g~~l~V~~   81 (90)
T d1x5sa1           2 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQ   81 (90)
T ss_dssp             CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEE
T ss_pred             CCCCCEEEEECCCCcCCHHHHHHhhhccccccceeeccccccccccceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence            45788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCC
Q 026963           97 ASQ   99 (230)
Q Consensus        97 A~e   99 (230)
                      |.+
T Consensus        82 a~~   84 (90)
T d1x5sa1          82 AGK   84 (90)
T ss_dssp             EEC
T ss_pred             cCC
Confidence            953

>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Pre-mRNA branch site protein p14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=2.2e-22  Score=153.37  Aligned_cols=78  Identities=21%  Similarity=0.344  Sum_probs=73.6

Q ss_pred             CCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963           18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA   97 (230)
Q Consensus        18 ~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA   97 (230)
                      ..+++|||+|||..+++++|+++|++||+|.+|.+..+   +.++|||||+|.+.++|..|++.|||+.|.|++|+|.||
T Consensus         5 ~~~r~l~V~nLp~~~te~~l~~~F~~~G~v~~i~~~~~---~~~kG~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~a   81 (114)
T d2f9da1           5 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNACDHLSGFNVCNRYLVVLYY   81 (114)
T ss_dssp             TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred             CCCCEEEEECCCCCCCHHHHHHHHhhcCCeEeeccccc---CCcCCeEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence            45789999999999999999999999999999999876   567899999999999999999999999999999999999


Q ss_pred             C
Q 026963           98 S   98 (230)
Q Consensus        98 ~   98 (230)
                      .
T Consensus        82 ~   82 (114)
T d2f9da1          82 N   82 (114)
T ss_dssp             C
T ss_pred             C
Confidence            5

>d2cpfa1 d.58.7.1 (A:362-446) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.86  E-value=2.8e-22  Score=145.81  Aligned_cols=77  Identities=18%  Similarity=0.309  Sum_probs=72.8

Q ss_pred             EEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCC---CceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEecCC
Q 026963           23 LIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCD---PFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYASQ   99 (230)
Q Consensus        23 LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tg---ksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA~e   99 (230)
                      |||+|||+.+++++|+++|++||+|.+|.++.++.++   .++|||||+|.+.++|..|++.|||+.+.|++|+|.||..
T Consensus         1 LfV~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~~~kG~afV~f~~~~~A~~A~~~~~~~~~~g~~i~V~~a~~   80 (85)
T d2cpfa1           1 LFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVRISER   80 (85)
T ss_dssp             EEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEECSSC
T ss_pred             CEEcCCCCCCCHHHHHHHHHHhCCccccceecccccccccccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCC
Confidence            8999999999999999999999999999999887765   5799999999999999999999999999999999999943

>d1x5ta1 d.58.7.1 (A:8-90) Splicing factor 3B subunit 4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor 3B subunit 4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=2.5e-22  Score=145.51  Aligned_cols=77  Identities=22%  Similarity=0.266  Sum_probs=73.4

Q ss_pred             EEEcCCCCCCCHHHHHHhhccCCcceEE-EeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEecCC
Q 026963           23 LIVRNVPSLGCGDDLLKLFATYGDIEEC-KPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYASQ   99 (230)
Q Consensus        23 LyV~NLP~~~teedL~~LFS~fG~I~~v-~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA~e   99 (230)
                      |||+|||+.++++||+++|++||+|.++ .++.++.|++++|||||+|.+.++|..|++.|||..|.|++|+|+||.+
T Consensus         1 lfV~nLp~~~te~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~g~~~~gr~l~v~~a~~   78 (83)
T d1x5ta1           1 IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFK   78 (83)
T ss_dssp             EEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEESCC
T ss_pred             CEEcCCCCcCcHHHHHHHHHHhCceeeeEEEEeeccccccCceEEEEECCHHHHHHHHHhCCCcEECCEEEEEEEecC
Confidence            8999999999999999999999999775 7899999999999999999999999999999999999999999999953

>d1u6fa1 d.58.7.1 (A:1-139) RNA-binding protein UBP1 {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein UBP1
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.86  E-value=3.4e-22  Score=157.37  Aligned_cols=81  Identities=33%  Similarity=0.399  Sum_probs=77.7

Q ss_pred             CCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963           18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA   97 (230)
Q Consensus        18 ~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA   97 (230)
                      +.+++|||+|||+.+++++|+++|++||+|.+|.++.++.|+.++|||||+|.+.++|..|++.|||+.|.|++|+|.||
T Consensus        40 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~t~~~rg~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~a  119 (139)
T d1u6fa1          40 DVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALA  119 (139)
T ss_dssp             TTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEES
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhhccccccccccccccccccceeeEEECCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence            34578999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             C
Q 026963           98 S   98 (230)
Q Consensus        98 ~   98 (230)
                      .
T Consensus       120 ~  120 (139)
T d1u6fa1         120 A  120 (139)
T ss_dssp             S
T ss_pred             C
Confidence            3

>d2cpxa1 d.58.7.1 (A:291-392) RNA-binding protein 41, RBM41 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 41, RBM41
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=7.2e-23  Score=153.02  Aligned_cols=86  Identities=17%  Similarity=0.216  Sum_probs=81.9

Q ss_pred             eeccCCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeE
Q 026963           14 YTVCDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLK   93 (230)
Q Consensus        14 ytv~~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~   93 (230)
                      |+...++++|||+|||..+++++|+++|++||.|..+.++.+..+++++|||||.|.+.++|..|++.|||..|.|++|+
T Consensus        12 ~~~~~ps~tl~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~~fV~f~~~~~A~~Ai~~l~g~~~~g~~l~   91 (102)
T d2cpxa1          12 YNPGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILV   91 (102)
T ss_dssp             CCCCSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCE
T ss_pred             CCCCCCCCEEEEeCCCCCCCHHHHHHHHhhccceeeEEeecccccccccccceEEeccHHHHHHHHHHhCCCEECCEEEE
Confidence            66677899999999999999999999999999999999999888899999999999999999999999999999999999


Q ss_pred             EEecCC
Q 026963           94 VSYASQ   99 (230)
Q Consensus        94 VsyA~e   99 (230)
                      |+||.+
T Consensus        92 V~~ak~   97 (102)
T d2cpxa1          92 IEFGKN   97 (102)
T ss_dssp             EEECCC
T ss_pred             EEeCCC
Confidence            999954

>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear factor Aly
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.86  E-value=5.5e-22  Score=143.04  Aligned_cols=75  Identities=16%  Similarity=0.198  Sum_probs=72.9

Q ss_pred             eEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963           22 YLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA   97 (230)
Q Consensus        22 ~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA   97 (230)
                      .|||+|||+.++++||+++|++||+|.+|+++.++ +++++|||||+|.+.++|..|++.|||+.+.|++|+|++|
T Consensus         2 rl~V~nLp~~~~~~~l~~~F~~~G~v~~~~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~l~V~~a   76 (78)
T d1no8a_           2 KLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLV   76 (78)
T ss_dssp             EEEEESCCTTCCHHHHHHHHHHHSCEEEEEESCSS-CCCSCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred             EEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEee-ccccceeEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence            59999999999999999999999999999999985 7999999999999999999999999999999999999999

>d2cqga1 d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TDP-43 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: TAR DNA-binding protein 43, TDP-43
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=8.3e-22  Score=146.63  Aligned_cols=82  Identities=15%  Similarity=0.203  Sum_probs=76.0

Q ss_pred             CCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963           18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA   97 (230)
Q Consensus        18 ~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA   97 (230)
                      .++++|||+|||+.+++++|+++|++||+|.+|+|+.|+.|+.++|||||.|.+.++|..|++.+  +.+.|+.|+|.+|
T Consensus         6 ~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~srG~aFV~f~~~~~a~~al~~~--~~l~Gr~i~v~~a   83 (90)
T d2cqga1           6 QKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQR--HMIDGRWCDCKLP   83 (90)
T ss_dssp             CCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHSC--EEETTEEEEEECC
T ss_pred             cCCCeEEEECCCCCCCHHHHHHHHHhhcccceeeeccCCCCcccCCEEEEEECCHHHHHHHHhcC--CccCCEEeEEEeC
Confidence            45788999999999999999999999999999999999999999999999999999999999854  5899999999999


Q ss_pred             CCCC
Q 026963           98 SQFE  101 (230)
Q Consensus        98 ~e~E  101 (230)
                      .+.+
T Consensus        84 ~~k~   87 (90)
T d2cqga1          84 NSKQ   87 (90)
T ss_dssp             CTTC
T ss_pred             CCCC
Confidence            5443

>d2ghpa1 d.58.7.1 (A:116-196) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: U4/U6 snRNA-associated-splicing factor PRP24
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.86  E-value=4.7e-22  Score=143.40  Aligned_cols=79  Identities=14%  Similarity=0.154  Sum_probs=69.2

Q ss_pred             CeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEecCC
Q 026963           21 RYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYASQ   99 (230)
Q Consensus        21 ~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA~e   99 (230)
                      .+|||+|||+.++++||+++|++||+|..+.++.+..+++++|||||+|.+.++|..|++.|||+.|.|++|+|.||.+
T Consensus         2 ~tl~v~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~i~V~~a~P   80 (81)
T d2ghpa1           2 CTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSNP   80 (81)
T ss_dssp             CEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred             cEEEEECCCCcCCHHHHHHHHHHhCcEEeeeeecccccccccceeEEEECCHHHHHHHHHHhCCCEECCEEEEEEEccC
Confidence            4899999999999999999999999999999988888999999999999999999999999999999999999999943

>d2cqia1 d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolysin TIAR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=1.4e-21  Score=144.10  Aligned_cols=80  Identities=24%  Similarity=0.346  Sum_probs=74.9

Q ss_pred             cCCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEe
Q 026963           17 CDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSY   96 (230)
Q Consensus        17 ~~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~Vsy   96 (230)
                      ..++++|||+|||..+++++|+++|++||+|.+|+++.++.++  +|||||+|.+.++|..|++.|||..|.|++|+|.|
T Consensus         5 ~~~~~tl~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~~~--~~~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~   82 (90)
T d2cqia1           5 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSN--DPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNW   82 (90)
T ss_dssp             SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSS--CCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred             CCCCCEEEEECCCCCCCHHHHHHHHHhcCCceeeeeecccCcc--ceeeEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence            3567899999999999999999999999999999999987654  89999999999999999999999999999999999


Q ss_pred             cC
Q 026963           97 AS   98 (230)
Q Consensus        97 A~   98 (230)
                      |.
T Consensus        83 a~   84 (90)
T d2cqia1          83 AT   84 (90)
T ss_dssp             CC
T ss_pred             cC
Confidence            93

>d1l3ka1 d.58.7.1 (A:8-91) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=2e-21  Score=142.28  Aligned_cols=78  Identities=14%  Similarity=0.213  Sum_probs=74.6

Q ss_pred             CCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963           19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA   97 (230)
Q Consensus        19 eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA   97 (230)
                      +.++|||+|||+.+++++|.++|++||+|.+|.++.|+.|+.++|||||+|.+.++|..|++ ++|+.|.|+.|+|..|
T Consensus         5 ~~~~lfV~nlp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~a~~ai~-~~~~~i~Gr~i~V~~A   82 (84)
T d1l3ka1           5 QLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN-ARPHKVDGRVVEPKRA   82 (84)
T ss_dssp             GGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH-TCSCEETTEECEEEEC
T ss_pred             CCcEEEEECCCCCCCHHHHHHHHHhhccccceeecccccCCCcccEEEEEEcCHHHHHHHHH-hCCCEECCEEEEEEee
Confidence            34689999999999999999999999999999999999999999999999999999999997 5999999999999988

>d2cq4a1 d.58.7.1 (A:132-232) RNA binding protein 23 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA binding protein 23
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=2e-21  Score=147.29  Aligned_cols=77  Identities=14%  Similarity=0.241  Sum_probs=74.9

Q ss_pred             CCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963           20 SRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA   97 (230)
Q Consensus        20 S~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA   97 (230)
                      .++|||+|||+.+++++|+++|++||+|.+|.++.+..||+++|||||+|.+.++|..|+. |||..|.|++|+|.+|
T Consensus        18 ~~tifV~nL~~~~te~~l~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~a~~A~~-l~g~~~~G~~l~V~~a   94 (101)
T d2cq4a1          18 ARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIG-LTGQRLLGVPIIVQAS   94 (101)
T ss_dssp             HTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHHH-HTTEEETTEEEEEEEH
T ss_pred             CCEEEEECCCCCCCHHHHHHHHcCCCeEEEEEeeecCCCccccceEEEEECCHHHHHHHHH-HCCCEECCEEEEEEEC
Confidence            5789999999999999999999999999999999999999999999999999999999995 9999999999999998

>d1cvja2 d.58.7.1 (A:91-179) Poly(A)-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Poly(A)-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=1.5e-21  Score=143.73  Aligned_cols=78  Identities=18%  Similarity=0.264  Sum_probs=73.3

Q ss_pred             CCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEecC
Q 026963           19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYAS   98 (230)
Q Consensus        19 eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA~   98 (230)
                      ...+|||+|||+.+++++|+++|++||+|.+|.++.+..  .++|||||+|.+.++|..|++.|||..|.|++|.|+||.
T Consensus         7 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~--~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~V~~a~   84 (89)
T d1cvja2           7 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN--GSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK   84 (89)
T ss_dssp             TTTEEEEESCCSSCCHHHHHHHHHTTSCEEEEEECCBTT--BCCSCEEEEESCHHHHHHHTTSSSEEEETTEEEEEEECC
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEeecC--CCcceeEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence            356899999999999999999999999999999998864  478999999999999999999999999999999999994

>d2cq3a1 d.58.7.1 (A:110-202) RNA-binding protein 9 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=5.9e-21  Score=141.74  Aligned_cols=79  Identities=25%  Similarity=0.333  Sum_probs=74.1

Q ss_pred             CCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEecC
Q 026963           19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYAS   98 (230)
Q Consensus        19 eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA~   98 (230)
                      +.++|||+|||+.+++++|+++|++||+|.+|.++.++.  .++|||||.|.+.++|..|++.|||..|.|++|+|.||.
T Consensus        10 ~~~~l~v~nLp~~~t~~~L~~~F~~~G~v~~v~~~~~~~--~~kg~afV~f~~~~~a~~Ai~~l~~~~~~g~~l~V~~A~   87 (93)
T d2cq3a1          10 TPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNAT   87 (93)
T ss_dssp             CCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHhhcceeeecccccccc--CCcceeEEEECCHHHHHHHHHHcCCCEECCEEEEEEecC
Confidence            467899999999999999999999999999999998864  479999999999999999999999999999999999995


Q ss_pred             C
Q 026963           99 Q   99 (230)
Q Consensus        99 e   99 (230)
                      +
T Consensus        88 ~   88 (93)
T d2cq3a1          88 A   88 (93)
T ss_dssp             S
T ss_pred             c
Confidence            4

>d1l3ka2 d.58.7.1 (A:103-181) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=4.5e-21  Score=137.35  Aligned_cols=77  Identities=17%  Similarity=0.163  Sum_probs=73.6

Q ss_pred             CCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963           20 SRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA   97 (230)
Q Consensus        20 S~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA   97 (230)
                      .++|||+|||+.++++||+++|++||+|..+.++.++.++.++|||||.|.+.++|..|+. |||+.|.|++|+|..|
T Consensus         2 ~r~lfV~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~~~~al~-~~~~~l~Gr~i~V~~A   78 (79)
T d1l3ka2           2 VKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVI-QKYHTVNGHNCEVRKA   78 (79)
T ss_dssp             CSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH-CSCCEETTEECEEEEC
T ss_pred             CCEEEECCCCCcCCHHHHHHHHHHhccccccccccCCCCcccccEEEEEEcCHHHHHHHHH-hCCCEECCEEEEEEEC
Confidence            3689999999999999999999999999999999999999999999999999999999985 8999999999999987

>d2cpea1 d.58.7.1 (A:353-453) RNA-binding protein EWS {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein EWS
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=2.9e-21  Score=143.71  Aligned_cols=84  Identities=19%  Similarity=0.167  Sum_probs=77.1

Q ss_pred             CCCCeEEEcCCCCCCCHHHHHHhhccCCcce--------EEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCC
Q 026963           18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIE--------ECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLG   89 (230)
Q Consensus        18 ~eS~~LyV~NLP~~~teedL~~LFS~fG~I~--------~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~G   89 (230)
                      .++++|||+|||..+++++|.++|++||+|.        .+.+..++.+++++|||||+|.+.++|..|++.|||+.|.|
T Consensus         6 ~~~~~i~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~d~~~~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g   85 (101)
T d2cpea1           6 SDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQG   85 (101)
T ss_dssp             CCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETT
T ss_pred             CCCCEEEEECCCCcCCHHHHHHHHHHCceEEEeeecccceeEEeeccccccccceeeEEecCHHHHHHHHHHhCCCEECC
Confidence            4578999999999999999999999999984        56777888899999999999999999999999999999999


Q ss_pred             ceeEEEecCCCC
Q 026963           90 NRLKVSYASQFE  101 (230)
Q Consensus        90 r~L~VsyA~e~E  101 (230)
                      ++|+|+||.+.+
T Consensus        86 r~i~V~~a~~~~   97 (101)
T d2cpea1          86 SKLKVSLARKKP   97 (101)
T ss_dssp             EECEEECSSCCC
T ss_pred             EEEEEEEcCCCC
Confidence            999999995433

>d2ghpa3 d.58.7.1 (A:206-291) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: U4/U6 snRNA-associated-splicing factor PRP24
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.84  E-value=1.8e-21  Score=142.70  Aligned_cols=79  Identities=20%  Similarity=0.240  Sum_probs=69.8

Q ss_pred             CCCeEEEcCCCCCCCH-HHHHHhhccCCcceEEEeecC-CCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEe
Q 026963           19 ESRYLIVRNVPSLGCG-DDLLKLFATYGDIEECKPMDA-EDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSY   96 (230)
Q Consensus        19 eS~~LyV~NLP~~~te-edL~~LFS~fG~I~~v~il~d-~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~Vsy   96 (230)
                      ++++|||+|||+.+++ ++|+++|++||+|++|.++.+ ..+++++|||||+|.+.++|..|++ |||+.|.|++|+|+|
T Consensus         3 e~~~l~V~nLp~~~t~ed~l~~~F~~~G~i~~v~i~~~~~~~~~~kg~afV~f~~~~~a~~Al~-~n~~~~~gr~l~V~~   81 (86)
T d2ghpa3           3 EGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERALQ-MNRSLLGNREISVSL   81 (86)
T ss_dssp             TTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHGG-GTTEEETTEEEEEEE
T ss_pred             CCCEEEEECCCCCcccHHHHHHHHHhhhhccceeeecccCCccccceeeeEEECCHHHHHHHHh-cCCCEECCEEEEEEE
Confidence            6889999999998765 569999999999999998764 5789999999999999999999995 999999999999999


Q ss_pred             cC
Q 026963           97 AS   98 (230)
Q Consensus        97 A~   98 (230)
                      |.
T Consensus        82 a~   83 (86)
T d2ghpa3          82 AD   83 (86)
T ss_dssp             CC
T ss_pred             cC
Confidence            93

>d1x4ha1 d.58.7.1 (A:8-105) RNA-binding protein 28 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 28
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.84  E-value=4.6e-21  Score=141.60  Aligned_cols=82  Identities=18%  Similarity=0.240  Sum_probs=77.5

Q ss_pred             CCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhc------CceeCCce
Q 026963           18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLD------EFVFLGNR   91 (230)
Q Consensus        18 ~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~Ln------G~~f~Gr~   91 (230)
                      +++++|||+|||+.+++++|+++|++||+|.++.++.+..++.++|||||+|.+.++|..|++.||      |..+.|++
T Consensus         6 ~~~~tlfV~nLp~~~te~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~~gr~   85 (98)
T d1x4ha1           6 TEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQ   85 (98)
T ss_dssp             CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCE
T ss_pred             CCCCEEEEcCCCCcCCHHHHHHHHhccccceeeeeccccccccccceEEEEEcCHHHHHHHHHHcccccccCCcEECCEE
Confidence            467899999999999999999999999999999999999999999999999999999999999987      78899999


Q ss_pred             eEEEecCC
Q 026963           92 LKVSYASQ   99 (230)
Q Consensus        92 L~VsyA~e   99 (230)
                      |+|+||.+
T Consensus        86 l~v~~a~~   93 (98)
T d1x4ha1          86 LKVDLAVT   93 (98)
T ss_dssp             EEEECCCC
T ss_pred             EEEEECCC
Confidence            99999943

>d1uawa_ d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Musashi-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.84  E-value=1.1e-21  Score=141.88  Aligned_cols=75  Identities=12%  Similarity=0.167  Sum_probs=72.8

Q ss_pred             eEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963           22 YLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA   97 (230)
Q Consensus        22 ~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA   97 (230)
                      .|||+|||+.+++++|.++|++||+|.+|+++.|+.|++++|||||+|.+.++|..|+. +||+.+.|++|+|..|
T Consensus         2 klfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~kG~aFV~f~~~~~a~~al~-~~~~~i~Gr~i~V~~A   76 (77)
T d1uawa_           2 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLA-QSRHELDSKTIDPKVA   76 (77)
T ss_dssp             CEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHH-TTTCCCSSCCCEEEEC
T ss_pred             EEEEeCCCCcCCHHHHHHHHHHhCCcceeeeecccCCCCccceEEEEECCHHHHHHHHH-cCCCEECCeEEEEEEC
Confidence            59999999999999999999999999999999999999999999999999999999997 6999999999999987

>d2cqda1 d.58.7.1 (A:1-103) RNA-binding region containing protein 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding region containing protein 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=4.2e-21  Score=145.20  Aligned_cols=77  Identities=21%  Similarity=0.258  Sum_probs=74.1

Q ss_pred             CeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEecC
Q 026963           21 RYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYAS   98 (230)
Q Consensus        21 ~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA~   98 (230)
                      ++|||+|||+.++++||+++|++||+|.+|+++.|+.|++++|||||.|.+.++|..|++.+|+ .|.|++|+|.+|.
T Consensus        11 ~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~kg~afV~f~~~~~A~~Ai~~~~~-~l~Gr~l~V~~a~   87 (103)
T d2cqda1          11 TKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNLAY   87 (103)
T ss_dssp             SEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEEST
T ss_pred             cEEEEeCCCCcCcHHHHHHHHhhcccccceeccccccccccCCeEEEEECCHHHHHHHHHHCCC-cCCCEEEEEEEcC
Confidence            5799999999999999999999999999999999999999999999999999999999999987 7999999999993

>d1hd0a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein d0 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoprotein d0
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=3.2e-21  Score=138.27  Aligned_cols=75  Identities=13%  Similarity=0.167  Sum_probs=71.9

Q ss_pred             eEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963           22 YLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA   97 (230)
Q Consensus        22 ~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA   97 (230)
                      .|||+|||+.+++++|.++|++||+|.+|.++.++.|++++|||||.|.+.++|..|++ +++..+.|+.|+|..|
T Consensus         1 klfV~nl~~~~te~~l~~~F~~~G~i~~~~i~~d~~t~~~kg~afV~f~~~~~a~~Al~-~~~~~l~Gr~i~V~rA   75 (75)
T d1hd0a_           1 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMD-QKEHKLNGKVIDPKRA   75 (75)
T ss_dssp             CEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCBTTTTBCCSEEEEEESSHHHHHHHHH-TCCCCBTTBCCEECCC
T ss_pred             CEEEeCCCCcCCHHHHHHHHHhhccccccccccCCCCCCcCceEEEEECCHHHHHHHHh-cCCCEECCCEEEeeEC
Confidence            48999999999999999999999999999999999999999999999999999999997 7999999999999765

>d1nu4a_ d.58.7.1 (A:) Splicesomal U1A protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicesomal U1A protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=1.6e-21  Score=144.12  Aligned_cols=85  Identities=21%  Similarity=0.330  Sum_probs=74.9

Q ss_pred             CCCeEEEcCCCCCCCHHHHH----HhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEE
Q 026963           19 ESRYLIVRNVPSLGCGDDLL----KLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKV   94 (230)
Q Consensus        19 eS~~LyV~NLP~~~teedL~----~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~V   94 (230)
                      |+++|||+|||+.++++||.    ++|++||+|.+|++..+   +.++|||||+|++.++|..|++.|||..|.|++|+|
T Consensus         2 P~~tl~V~nLp~~~t~~dl~~~l~~~f~~~G~i~~i~~~~~---~~~~g~afV~F~~~~~A~~A~~~~~~~~~~g~~l~v   78 (91)
T d1nu4a_           2 PNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRS---LKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRI   78 (91)
T ss_dssp             CCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHH---HHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHhcccccccceEEeee---ccCCCceEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence            68999999999999998875    56999999999998654   678999999999999999999999999999999999


Q ss_pred             EecCCCCChHHHHHH
Q 026963           95 SYASQFESLADTKDK  109 (230)
Q Consensus        95 syA~e~Es~~d~r~K  109 (230)
                      .||   ++.++...|
T Consensus        79 ~~a---k~~~~~~~k   90 (91)
T d1nu4a_          79 QYA---KTDSDIIAK   90 (91)
T ss_dssp             EEC---SSCCTHHHH
T ss_pred             EEe---CCCchhhcc
Confidence            999   455544433

>d1x4ba1 d.58.7.1 (A:8-110) Heterogeneous nuclear ribonucleoproteins A2/B1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoproteins A2/B1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=6.5e-21  Score=145.10  Aligned_cols=80  Identities=14%  Similarity=0.212  Sum_probs=75.8

Q ss_pred             CCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEecC
Q 026963           19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYAS   98 (230)
Q Consensus        19 eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA~   98 (230)
                      +.++|||+|||+.++++||+++|++||+|.++.|+.|+.|+.++|||||.|.+.++|..|++ ++|+.|.|++|+|.+|.
T Consensus        19 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~~~i~~d~~~~~~kg~aFV~f~~~~~a~~al~-~~~~~l~G~~i~V~~a~   97 (103)
T d1x4ba1          19 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA-ARPHSIDGRVVEPKRAV   97 (103)
T ss_dssp             HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHT-SCSEEETTEEEEEECCS
T ss_pred             CCCEEEEeCCCCcCCHHHHHHHHHhhCcccceeecccccCCCccCeEEEEECCHHHHHHHHH-hCCCeECCEEEEEEECc
Confidence            34789999999999999999999999999999999999999999999999999999999995 79999999999999995


Q ss_pred             C
Q 026963           99 Q   99 (230)
Q Consensus        99 e   99 (230)
                      +
T Consensus        98 ~   98 (103)
T d1x4ba1          98 A   98 (103)
T ss_dssp             S
T ss_pred             c
Confidence            4

>d2msta_ d.58.7.1 (A:) Neural RNA-binding protein Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Neural RNA-binding protein Musashi-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.83  E-value=4.5e-21  Score=135.61  Aligned_cols=75  Identities=11%  Similarity=0.135  Sum_probs=72.6

Q ss_pred             eEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963           22 YLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA   97 (230)
Q Consensus        22 ~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA   97 (230)
                      .|||+|||..++++||.++|++||+|..+.++.++.++.++|||||+|.+.++|..|++ |||+.|.|++|+|.+|
T Consensus         1 rlfV~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~afV~F~~~~~a~~al~-~~~~~l~gr~i~V~~A   75 (75)
T d2msta_           1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA   75 (75)
T ss_dssp             CEEEECCCSSCCHHHHHHHHHTTSCCSEECCBCCTTCTTSCCEEEEECSCHHHHHHHHH-CSSCCBTTBCCEEEEC
T ss_pred             CEEEeCCCCCCCHHHHHHHHHHhCCcceeeeeeeccccccCceeEEEECCHHHHHHHHh-cCCCEECCeEEEEEEC
Confidence            48999999999999999999999999999999999999999999999999999999996 9999999999999987

>d2cpia1 d.58.7.1 (A:101-189) E3 ubiquitin protein ligase CNOT4 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: E3 ubiquitin protein ligase CNOT4
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.83  E-value=4.9e-21  Score=141.55  Aligned_cols=77  Identities=14%  Similarity=0.202  Sum_probs=70.7

Q ss_pred             CCCeEEEcCCCCCCCHHHH---HHhhccCCcceEEEeecCCCCCCc---eeEEEEEEccHhHHHHHHHHhcCceeCCcee
Q 026963           19 ESRYLIVRNVPSLGCGDDL---LKLFATYGDIEECKPMDAEDCDPF---TDVYFIKFRLFSNARFAKRKLDEFVFLGNRL   92 (230)
Q Consensus        19 eS~~LyV~NLP~~~teedL---~~LFS~fG~I~~v~il~d~~tgks---rG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L   92 (230)
                      +.++|||+|||+.++++||   +++|++||+|.+|.++.++.++.+   +|||||+|.+.++|..|++.|||+.|.|++|
T Consensus         7 q~n~vyV~nLp~~~t~~~l~~~~e~F~~~G~I~~v~i~~~~~~~~~~~~~g~aFV~f~~~~~A~~Ai~~lng~~~~gr~l   86 (89)
T d2cpia1           7 QKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTL   86 (89)
T ss_dssp             CSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred             ecCEEEEECCCCccCHHHHHHHHHHhcccCCceEEEEeeccCcCCCCCcceEEEEecccchhHHHHHHHhCCCEECCEEE
Confidence            3567999999999999999   778999999999999998877544   5999999999999999999999999999999


Q ss_pred             EEE
Q 026963           93 KVS   95 (230)
Q Consensus        93 ~Vs   95 (230)
                      +|+
T Consensus        87 kvS   89 (89)
T d2cpia1          87 KAS   89 (89)
T ss_dssp             EEE
T ss_pred             EEC
Confidence            986

>d1whxa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.83  E-value=4.6e-21  Score=144.54  Aligned_cols=74  Identities=18%  Similarity=0.187  Sum_probs=69.4

Q ss_pred             CCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEecCC
Q 026963           20 SRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYASQ   99 (230)
Q Consensus        20 S~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA~e   99 (230)
                      +++|||+|||+.+++++|.++|++||+|..|.|..      .+|||||+|.+.++|..|++.|||..|.|++|+|+||+.
T Consensus        10 ~~~l~V~nLp~~~t~~~L~~~F~~fG~I~~v~l~~------~kg~afV~f~~~~~A~~A~~~lng~~~~gr~l~v~~a~~   83 (111)
T d1whxa_          10 KTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPI   83 (111)
T ss_dssp             EEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEET
T ss_pred             CCEEEEECCCCCCCHHHHHhhhhccCCccEEEeec------cCceEEEEEcCHHHHHHHHHHHcCCccCCCeEEEEECCC
Confidence            46899999999999999999999999999999854      469999999999999999999999999999999999964

>d1x4aa1 d.58.7.1 (A:9-103) Splicing factor, arginine/serine-rich 1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor, arginine/serine-rich 1, SFRS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=1.6e-20  Score=139.61  Aligned_cols=79  Identities=22%  Similarity=0.283  Sum_probs=73.2

Q ss_pred             CCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963           18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA   97 (230)
Q Consensus        18 ~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA   97 (230)
                      +++.+|||+|||..++++||+++|++||+|..+.+..+   +.++|||||.|++.++|..|++.|||+.|.|++|+|+||
T Consensus        12 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~---~~~~g~afV~f~~~e~a~~Ai~~l~g~~~~g~~l~V~~a   88 (95)
T d1x4aa1          12 NNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFP   88 (95)
T ss_dssp             CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred             CCCCEEEEECCCCCCCHHHHHHHHhcCCceEEEEeccc---ccccceEEEEECCHHHHHHHHHHhCCCEECCEEEEEEec
Confidence            45678999999999999999999999999999998765   567899999999999999999999999999999999999


Q ss_pred             CC
Q 026963           98 SQ   99 (230)
Q Consensus        98 ~e   99 (230)
                      .+
T Consensus        89 ~~   90 (95)
T d1x4aa1          89 RS   90 (95)
T ss_dssp             CC
T ss_pred             cC
Confidence            53

>d2b0ga1 d.58.7.1 (A:1-83) Splicesomal U1A protein {Drosophila melanogaster [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicesomal U1A protein
species: Drosophila melanogaster [TaxId: 7227]

Probab=99.82  E-value=2.2e-20  Score=135.74  Aligned_cols=77  Identities=21%  Similarity=0.314  Sum_probs=71.2

Q ss_pred             cCCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeC-CceeEEE
Q 026963           17 CDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFL-GNRLKVS   95 (230)
Q Consensus        17 ~~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~-Gr~L~Vs   95 (230)
                      ..|+++|||+|||..+++++|.++|++||+|.+|+++.+     .+|||||.|.+.++|..|++.|||+.|. |++|+|+
T Consensus         5 ~pP~~tl~V~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~i~v~   79 (83)
T d2b0ga1           5 QPPNQILFLTNLPEETNEMMLSMLFNQFPGFKEVRLVPN-----RHDIAFVEFTTELQSNAAKEALQGFKITPTHAMKIT   79 (83)
T ss_dssp             CSCCSEEEEESCCTTCCHHHHHHHHTTSTTEEEEEECTT-----TCSCEEEEESSHHHHHHHHHHHTTCBSSTTCBCEEE
T ss_pred             CCCCCEEEEECCCCCCCHHHHHhhhccCccEEEeeeecc-----cceeEEEecCCHHHHHHHHHHhCCcEeCCCcEEEEE
Confidence            457899999999999999999999999999999999865     3689999999999999999999999995 6899999


Q ss_pred             ecC
Q 026963           96 YAS   98 (230)
Q Consensus        96 yA~   98 (230)
                      ||.
T Consensus        80 ~ak   82 (83)
T d2b0ga1          80 FAK   82 (83)
T ss_dssp             ECC
T ss_pred             Eec
Confidence            993

>d2adca1 d.58.7.1 (A:335-443) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=1.4e-20  Score=141.63  Aligned_cols=74  Identities=19%  Similarity=0.340  Sum_probs=69.2

Q ss_pred             CCeEEEcCCCC-CCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEecC
Q 026963           20 SRYLIVRNVPS-LGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYAS   98 (230)
Q Consensus        20 S~~LyV~NLP~-~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA~   98 (230)
                      |++|||+|||+ .+++++|+++|++||+|++|.++.++     +|||||+|+++++|..|++.|||..|.|++|+|+||.
T Consensus         2 ~~~l~V~nL~p~~~te~~L~~~F~~fG~I~~v~i~~~~-----kg~afV~f~~~~~A~~ai~~lng~~l~g~~l~v~~s~   76 (109)
T d2adca1           2 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK   76 (109)
T ss_dssp             CSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCS
T ss_pred             CCEEEEeCCCcccCCHHHHHHHHhhccccceEEEEecc-----cceEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence            67999999965 58899999999999999999999873     6999999999999999999999999999999999993

>d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing octamer-binding protein, NonO {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Non-POU domain-containing octamer-binding protein, NonO
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.82  E-value=1.7e-20  Score=137.74  Aligned_cols=77  Identities=27%  Similarity=0.390  Sum_probs=71.4

Q ss_pred             CCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEecC
Q 026963           19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYAS   98 (230)
Q Consensus        19 eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA~   98 (230)
                      +..+|||+|||..++++||+++|++||+|.+|.+..+      +|||||+|++.++|..|++.|||..|.|++|+|+||+
T Consensus         7 ~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~i~~~~~------k~~afV~f~~~~~A~~A~~~l~g~~i~g~~l~V~~A~   80 (86)
T d2cpja1           7 QRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFAC   80 (86)
T ss_dssp             CTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESS
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHhCCceEeeeecc------cceEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence            3457999999999999999999999999999999866      5899999999999999999999999999999999996


Q ss_pred             CCC
Q 026963           99 QFE  101 (230)
Q Consensus        99 e~E  101 (230)
                      ...
T Consensus        81 ~~~   83 (86)
T d2cpja1          81 HSA   83 (86)
T ss_dssp             CCS
T ss_pred             CcC
Confidence            543

>d1x5oa1 d.58.7.1 (A:8-108) RNA-binding motif, single-stranded-interacting protein 1, RBMS1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding motif, single-stranded-interacting protein 1, RBMS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=1.3e-20  Score=141.82  Aligned_cols=80  Identities=9%  Similarity=0.103  Sum_probs=74.8

Q ss_pred             CCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963           18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA   97 (230)
Q Consensus        18 ~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA   97 (230)
                      .++++|||+|||..+++++|+++|++||+|..+.++.+ .++.++|||||+|.+.++|..|++.|||..|.|++|.|.++
T Consensus        16 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~~~~~-~~~~~~g~afV~f~~~~~A~~Ai~~lng~~i~gr~~~v~~~   94 (101)
T d1x5oa1          16 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRD-SSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPT   94 (101)
T ss_dssp             CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEEC-SSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCS
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHhhcccccceeeecc-cccccccceeEEeCCHHHHHHHHHHhCCCEECCcCCccCCC
Confidence            35678999999999999999999999999999999887 47899999999999999999999999999999999999877


Q ss_pred             C
Q 026963           98 S   98 (230)
Q Consensus        98 ~   98 (230)
                      .
T Consensus        95 ~   95 (101)
T d1x5oa1          95 E   95 (101)
T ss_dssp             S
T ss_pred             C
Confidence            3

>d1x0fa1 d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0 (AUF1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein D0 (AUF1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=8.2e-21  Score=137.04  Aligned_cols=75  Identities=12%  Similarity=0.138  Sum_probs=71.6

Q ss_pred             eEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963           22 YLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA   97 (230)
Q Consensus        22 ~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA   97 (230)
                      .|||+|||+.+++++|.++|++||+|.+|.++.++.|++++|||||+|.+.++|..|++. +++.+.|+.|+|.+|
T Consensus         1 klfVgnLp~~~te~~l~~~F~~~G~I~~v~i~~d~~t~~~rG~~FV~f~~~~~a~~al~~-~~~~i~g~~i~vk~A   75 (75)
T d1x0fa1           1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEIKVA   75 (75)
T ss_dssp             EEEEESCCSSCCHHHHHHHHHHHSCEEEEECCCCTTTCCTTCCEEEEESSSHHHHHHTTC-SSCCBTTBCCEEECC
T ss_pred             CEEEcCCCCCCCHHHHHHHHHHhCCcccccccccccccccccEEEEEECCHHHHHHHHhh-CCCEECCEEeEEEEC
Confidence            489999999999999999999999999999999999999999999999999999999975 788999999999876

>d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolysin TIAR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=2.6e-20  Score=139.54  Aligned_cols=75  Identities=15%  Similarity=0.228  Sum_probs=70.7

Q ss_pred             CCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEecC
Q 026963           19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYAS   98 (230)
Q Consensus        19 eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA~   98 (230)
                      ++++|||+|||..+++++|+++|++||+|.+|+++.+      +|||||+|.+.++|..|+..|||..|.|++|+|+||.
T Consensus        17 ~~~~l~v~nL~~~~te~~L~~~F~~fG~i~~v~i~~~------kg~afV~f~~~~~A~~Ai~~l~~~~i~g~~l~v~~ak   90 (96)
T d1x4ga1          17 KNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGK   90 (96)
T ss_dssp             SCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred             CCCEEEEcCCCCCCCHHHHHHHHHHhCCceEEEEEec------ceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEcC
Confidence            3568999999999999999999999999999999976      6899999999999999999999999999999999995


Q ss_pred             C
Q 026963           99 Q   99 (230)
Q Consensus        99 e   99 (230)
                      +
T Consensus        91 ~   91 (96)
T d1x4ga1          91 E   91 (96)
T ss_dssp             C
T ss_pred             C
Confidence            3

>d1zh5a2 d.58.7.1 (A:105-189) Lupus LA protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Lupus LA protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=4.9e-20  Score=135.04  Aligned_cols=78  Identities=13%  Similarity=0.206  Sum_probs=73.2

Q ss_pred             CCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEecC
Q 026963           19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYAS   98 (230)
Q Consensus        19 eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA~   98 (230)
                      +.++|||+|||..+++++|.++|++||+|.+|.++.+. ++.++|||||+|.+.++|..|++ ++|..|.|++|.|.|+.
T Consensus         5 ~~rtvfV~nlp~~~te~~l~~~F~~~G~v~~v~l~~~~-~~~~kG~afV~f~~~e~a~~al~-~~~~~~~g~~l~v~~~~   82 (85)
T d1zh5a2           5 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFKD   82 (85)
T ss_dssp             HTTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHT-CCCCEETTEECEEEEGG
T ss_pred             CcCEEEEECCCCCCCHHHHHHHHHHhcccccceeeeec-cCCcceEEEEEEcCHHHHHHHHH-HCCCEECCEEEEEEEcC
Confidence            46799999999999999999999999999999998874 79999999999999999999996 79999999999999984

>d2adca2 d.58.7.1 (A:444-531) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=5.1e-20  Score=134.67  Aligned_cols=79  Identities=20%  Similarity=0.226  Sum_probs=71.9

Q ss_pred             ccCCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCcee-CCceeEE
Q 026963           16 VCDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVF-LGNRLKV   94 (230)
Q Consensus        16 v~~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f-~Gr~L~V   94 (230)
                      +..|+++|||+|||..+++++|.++|++||.|.++.+...    +.+|||||+|++.++|..|+..|||+.+ .|++|+|
T Consensus         6 ~~pPs~tL~V~NLp~~~te~~l~~~F~~~G~v~~~~~~~~----~~~~~afV~f~~~~~A~~A~~~l~~~~i~~g~~l~v   81 (88)
T d2adca2           6 IFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQ----KDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRV   81 (88)
T ss_dssp             CCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECS----SSTTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEE
T ss_pred             CCCCCCEEEEECCCCCCCHHHHHHHhhccCCEEEEEEeee----cccceeEEEECCHHHHHHHHHhccCCEecCCCEEEE
Confidence            4467899999999999999999999999999999887654    4578999999999999999999999998 5899999


Q ss_pred             EecC
Q 026963           95 SYAS   98 (230)
Q Consensus        95 syA~   98 (230)
                      +||.
T Consensus        82 ~~sk   85 (88)
T d2adca2          82 SFSK   85 (88)
T ss_dssp             EECS
T ss_pred             EeCC
Confidence            9994

>d1x4ea1 d.58.7.1 (A:8-79) RNA-binding motif, single-stranded-interacting protein 2, RBMS2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding motif, single-stranded-interacting protein 2, RBMS2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=7.1e-21  Score=134.32  Aligned_cols=71  Identities=24%  Similarity=0.249  Sum_probs=69.0

Q ss_pred             EEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeE
Q 026963           23 LIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLK   93 (230)
Q Consensus        23 LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~   93 (230)
                      |||+|||..+++++|.++|++||+|..++++.++.++.++|+|||+|.+.++|..|+..|||+.|.|+.|+
T Consensus         1 lyV~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~A~~Ai~~lng~~~~Gr~~k   71 (72)
T d1x4ea1           1 LYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAK   71 (72)
T ss_dssp             EEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCC
T ss_pred             CEEeCCCCcCCHHHHHHHHhhhccccccccccccccccccceeEEEECCHHHHHHHHHHhCCCEECCEECc
Confidence            79999999999999999999999999999999999999999999999999999999999999999999874

>d2disa1 d.58.7.1 (A:8-103) Hypothetical protein FLJ20273 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Hypothetical protein FLJ20273
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=7.9e-20  Score=135.83  Aligned_cols=79  Identities=18%  Similarity=0.285  Sum_probs=71.4

Q ss_pred             CeEEEcCCCCCCCHHHHHHhhccCCc-ceEEEeecCC-CCCCceeEEEEEEccHhHHHHHHHHhcCc--eeCCceeEEEe
Q 026963           21 RYLIVRNVPSLGCGDDLLKLFATYGD-IEECKPMDAE-DCDPFTDVYFIKFRLFSNARFAKRKLDEF--VFLGNRLKVSY   96 (230)
Q Consensus        21 ~~LyV~NLP~~~teedL~~LFS~fG~-I~~v~il~d~-~tgksrG~AFV~F~d~edA~~A~~~LnG~--~f~Gr~L~Vsy   96 (230)
                      ..|||+|||..+++++|+++|++||+ |.++.++.+. .+++++|||||+|.+.++|..|++.|++.  .+.|++|+|+|
T Consensus         2 ~rLyV~nLp~~~te~~l~~~f~~~g~~i~~v~~~~~~~~~~~~rg~aFV~F~~~~~A~~Ai~~l~~~~~~~~g~~i~V~~   81 (96)
T d2disa1           2 CRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDW   81 (96)
T ss_dssp             EEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEEEE
T ss_pred             CEEEEcCCCCcCCHHHHHHHHHHhCCcceEEEEeeeccccccCCCeEEEEEcCHHHHHHHHHHHcCCCeEECCEEEEEEE
Confidence            47999999999999999999999997 8999999875 56899999999999999999999999754  55799999999


Q ss_pred             cCC
Q 026963           97 ASQ   99 (230)
Q Consensus        97 A~e   99 (230)
                      |.+
T Consensus        82 A~p   84 (96)
T d2disa1          82 AEP   84 (96)
T ss_dssp             SCS
T ss_pred             cCC
Confidence            944

>d2bz2a1 d.58.7.1 (A:35-113) Negative elongation factor E, NELF-E {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Negative elongation factor E, NELF-E
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=1e-19  Score=131.31  Aligned_cols=73  Identities=19%  Similarity=0.184  Sum_probs=68.3

Q ss_pred             CCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963           18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA   97 (230)
Q Consensus        18 ~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA   97 (230)
                      .++++|||+|+|  +++++|+++|++||+|.+|.+..+      +|||||+|.+.++|..|++.|||..+.|++|+|+||
T Consensus         3 ~~~~ti~V~~~~--~te~~L~~~F~~~G~I~~v~~~~~------~~~afV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a   74 (79)
T d2bz2a1           3 RKGNTLYVYGED--MTPTLLRGAFSPFGNIIDLSMDPP------RNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA   74 (79)
T ss_dssp             CCCCEEEEECSS--CCHHHHHHHHSTTCCCSCEEEETT------TTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred             CCCCEEEEECCC--CCHHHHHHHHhccCccceeeeccC------CCEEEEEEcccHHHHHHHHHhCCCEECCEEEEEEEe
Confidence            467899999997  799999999999999999999765      589999999999999999999999999999999999


Q ss_pred             C
Q 026963           98 S   98 (230)
Q Consensus        98 ~   98 (230)
                      .
T Consensus        75 ~   75 (79)
T d2bz2a1          75 R   75 (79)
T ss_dssp             C
T ss_pred             c
Confidence            4

>d2cpda1 d.58.7.1 (A:223-308) APOBEC1 stimulating protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: APOBEC1 stimulating protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=1.9e-19  Score=131.11  Aligned_cols=75  Identities=21%  Similarity=0.184  Sum_probs=69.4

Q ss_pred             CCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEecC
Q 026963           19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYAS   98 (230)
Q Consensus        19 eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA~   98 (230)
                      ..++|||+|||+.++++||+++|++||.|..+.+.      .++|||||.|.+.++|..|+..|||..+.|++|+|+||.
T Consensus         7 ~~k~l~V~nLp~~~te~~l~~~F~~~g~i~~~~~~------~~rg~afV~f~~~~~A~~Ai~~l~~~~i~g~~i~V~~ak   80 (86)
T d2cpda1           7 SVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVK------KIRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAK   80 (86)
T ss_dssp             CCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEE------ECSSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCC
T ss_pred             CCCEEEEcCCCCCCCHHHHHHhhcccceeeeEEEc------cccEEEEEEeCCHHHHHHHHHHcCCCEECCEEEEEEecc
Confidence            45789999999999999999999999999988764      357999999999999999999999999999999999995


Q ss_pred             C
Q 026963           99 Q   99 (230)
Q Consensus        99 e   99 (230)
                      +
T Consensus        81 P   81 (86)
T d2cpda1          81 P   81 (86)
T ss_dssp             C
T ss_pred             C
Confidence            4

>d2cqpa1 d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 12
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.79  E-value=7.2e-20  Score=133.11  Aligned_cols=77  Identities=18%  Similarity=0.172  Sum_probs=70.6

Q ss_pred             CeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963           21 RYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA   97 (230)
Q Consensus        21 ~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA   97 (230)
                      ..|||+|||+.++++||+++|+.||.|..+.++.+..++.++|+|||.|.+.++|..|++.|||+.+.|++|+|++|
T Consensus        10 ~~l~v~nLp~~~~~~di~~~F~~~~~~~~~~~~~~~~~g~~~G~afV~f~~~e~a~~Ai~~l~~~~l~gr~i~v~l~   86 (86)
T d2cqpa1          10 TIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG   86 (86)
T ss_dssp             EEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred             CEEEEECCCCCCCHHHHHHHHhhcccceeEEEEEeCCCCCcceEEEEEEcCcHHHHHHHHHcCCCEECCEEEEEEEC
Confidence            35999999999999999999999999987544444578999999999999999999999999999999999999986

>d1fjeb1 d.58.7.1 (B:1-91) Nucleolin {Golden hamster (Mesocricetus auratus) [TaxId: 10036]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolin
species: Golden hamster (Mesocricetus auratus) [TaxId: 10036]

Probab=99.79  E-value=1.3e-20  Score=139.96  Aligned_cols=78  Identities=13%  Similarity=0.125  Sum_probs=72.9

Q ss_pred             CCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEecC
Q 026963           19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYAS   98 (230)
Q Consensus        19 eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA~   98 (230)
                      ++.+|||+|||+.+++++|+++|++||+|..|.++.+ .+|+++|||||.|.+.++|..|++ |||..+.|++|+|++|.
T Consensus        12 ~~~~ifV~nL~~~~te~~l~~~F~~~G~i~~~~v~~~-~~g~~kg~afv~F~~~e~a~~Al~-~~g~~~~g~~i~V~~ak   89 (91)
T d1fjeb1          12 TPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDV-RTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPK   89 (91)
T ss_dssp             SSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEE-EEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEECCC
T ss_pred             CCcEEEEeCccCcchHHHHHHHHhcCCcEEEeeeeec-CCCCccEEeEEeeCCHHHHHHHHh-cCCcEECCEEEEEEecC
Confidence            4568999999999999999999999999999998755 679999999999999999999996 99999999999999993

>d1wf2a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoproteins C1/C2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoproteins C1/C2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=1.7e-19  Score=135.74  Aligned_cols=73  Identities=22%  Similarity=0.338  Sum_probs=66.6

Q ss_pred             CCCCeEEEcCCCC-CCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEe
Q 026963           18 DESRYLIVRNVPS-LGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSY   96 (230)
Q Consensus        18 ~eS~~LyV~NLP~-~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~Vsy   96 (230)
                      ..+.+|||+|||+ .++++||+++|++||+|.+|.+        ++|||||+|++.++|..|++.|||+.|.|++|+|+|
T Consensus        13 ~~~~~lfV~nL~~~~~~~~~L~~~F~~~G~i~~~~i--------~rg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~   84 (98)
T d1wf2a_          13 SMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSV--------HKGFAFVQYVNERNARAAVAGEDGRMIAGQVLDINL   84 (98)
T ss_dssp             SCCCCEEEEEECTTTCCHHHHHHSSTTSSCEEEEEE--------ETEEEEEEESSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred             CCCcEEEEeCCCcccCCHHHHHHHHhhcCCEEEEEE--------eCCeEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence            3466899999974 5677899999999999999998        369999999999999999999999999999999999


Q ss_pred             cC
Q 026963           97 AS   98 (230)
Q Consensus        97 A~   98 (230)
                      |.
T Consensus        85 a~   86 (98)
T d1wf2a_          85 AA   86 (98)
T ss_dssp             TT
T ss_pred             CC
Confidence            94

>d1wg1a_ d.58.7.1 (A:) Probable RNA-binding protein KIAA1579 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein KIAA1579
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=1.7e-19  Score=132.90  Aligned_cols=75  Identities=20%  Similarity=0.312  Sum_probs=66.5

Q ss_pred             CCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963           18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA   97 (230)
Q Consensus        18 ~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA   97 (230)
                      ..+++|||+|||+.++++||+++|++|| +..+.+      +.++|||||+|.+.++|+.|++.|||+.|.|++|+|+||
T Consensus         3 s~s~~i~V~nLp~~~t~~~l~~lF~~~G-~~~~~~------~~~kg~afV~f~~~~~A~~Ai~~ln~~~~~G~~l~V~~a   75 (88)
T d1wg1a_           3 SGSSGILVKNLPQDSNCQEVHDLLKDYD-LKYCYV------DRNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQ   75 (88)
T ss_dssp             CCCCCEEEESCCSSCCHHHHHHHTCSSC-CCCEEE------EGGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred             CCCCEEEEeCCCCccChHHHHHHHHhcC-ceeeee------eccCCceEEEECCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence            3577999999999999999999999999 333333      346799999999999999999999999999999999999


Q ss_pred             CC
Q 026963           98 SQ   99 (230)
Q Consensus        98 ~e   99 (230)
                      +.
T Consensus        76 ~~   77 (88)
T d1wg1a_          76 PT   77 (88)
T ss_dssp             CC
T ss_pred             CC
Confidence            64

>d2cqha1 d.58.7.1 (A:2-81) IGF-II mRNA-binding protein 2 isoform A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: IGF-II mRNA-binding protein 2 isoform A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=5.6e-20  Score=133.13  Aligned_cols=73  Identities=19%  Similarity=0.146  Sum_probs=66.8

Q ss_pred             CeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCc-eeCCceeEEEecCC
Q 026963           21 RYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEF-VFLGNRLKVSYASQ   99 (230)
Q Consensus        21 ~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~-~f~Gr~L~VsyA~e   99 (230)
                      .+|||+|||+.+++++|+++|++||.|.++.++.      ++|||||+|.+.++|..|++.|||. .+.|++|+|+||.+
T Consensus         2 n~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~------~rg~aFV~f~~~~~A~~Ai~~lng~~~~~G~~i~V~~a~~   75 (80)
T d2cqha1           2 NKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSVS   75 (80)
T ss_dssp             CCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECCC
T ss_pred             CEEEEECCCCCCCHHHHHHHHHHhCcEEEeEEec------ccceEEEEECCHHHHHHHHHHhCCCeEECCEEEEEEEcCC
Confidence            4699999999999999999999999998777664      4699999999999999999999996 69999999999954

>d1whya_ d.58.7.1 (A:) Putative RNA-binding protein 15B, Rbm15b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Putative RNA-binding protein 15B, Rbm15b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.78  E-value=3.6e-19  Score=132.89  Aligned_cols=78  Identities=21%  Similarity=0.321  Sum_probs=71.7

Q ss_pred             eccCCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCC--cee
Q 026963           15 TVCDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLG--NRL   92 (230)
Q Consensus        15 tv~~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~G--r~L   92 (230)
                      -...++++|||+|||+.+++++|+++|++||+|..|.+..+      +|||||+|.+.++|..|++.|||..|.|  ++|
T Consensus        12 g~~~Ps~tl~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~------~~~afV~f~~~~~A~~A~~~l~~~~i~g~~~~l   85 (97)
T d1whya_          12 GKANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRL   85 (97)
T ss_dssp             CCCCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBC
T ss_pred             CCCCCCCEEEEcCCCCCCCHHHHHHHHHhhcccceEeeecc------ccEEEeccCCHHHHHHHHHHhCCCEeCCCceEE
Confidence            34567899999999999999999999999999999999765      5899999999999999999999999987  489


Q ss_pred             EEEecC
Q 026963           93 KVSYAS   98 (230)
Q Consensus        93 ~VsyA~   98 (230)
                      +|+||.
T Consensus        86 ~v~~ak   91 (97)
T d1whya_          86 RVDFAK   91 (97)
T ss_dssp             EEEECC
T ss_pred             EEEeCC
Confidence            999995

>d2cpya1 d.58.7.1 (A:536-638) RNA-binding protein 12 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 12
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=2.5e-19  Score=134.45  Aligned_cols=82  Identities=16%  Similarity=0.104  Sum_probs=74.6

Q ss_pred             eccCCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEE
Q 026963           15 TVCDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKV   94 (230)
Q Consensus        15 tv~~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~V   94 (230)
                      +|+....+|||+|||+.++++||.++|+.||.|..+.++.+..+|.++|+|||+|.+.++|..|++ |||+.|.|+.|.|
T Consensus         3 dv~~~~~~v~v~nLp~~~t~~~l~~~F~~~g~i~~~~~~~~~~~g~~~G~afV~F~s~~~a~~Al~-~n~~~i~gr~i~V   81 (103)
T d2cpya1           3 DVNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSER-LHRKKLNGREAFV   81 (103)
T ss_dssp             SCCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGG-GCSEEETTEEEEE
T ss_pred             CCCCCceEEEEeCCCCCCCHHHHhhhhcccceEEEEEEEEeCCCCCcCccEEEEECCHHHHHHHHh-cCCCeECCcEEEE
Confidence            356677899999999999999999999999999876555555789999999999999999999996 9999999999999


Q ss_pred             Eec
Q 026963           95 SYA   97 (230)
Q Consensus        95 syA   97 (230)
                      .++
T Consensus        82 ~~~   84 (103)
T d2cpya1          82 HVV   84 (103)
T ss_dssp             EEE
T ss_pred             EEC
Confidence            998

>d1fjca_ d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocricetus auratus) [TaxId: 10036]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolin
species: Golden hamster (Mesocricetus auratus) [TaxId: 10036]

Probab=99.78  E-value=1.6e-19  Score=134.36  Aligned_cols=77  Identities=16%  Similarity=0.201  Sum_probs=70.6

Q ss_pred             CCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963           18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA   97 (230)
Q Consensus        18 ~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA   97 (230)
                      .++++|||+|||+.++++||+++|++||+|..+.     .++.++|||||+|.+.++|..|++.|||..|.|++|+|.||
T Consensus        14 ~~~~~l~V~nL~~~~te~~l~~~F~~~g~v~~~~-----~~~~~~~~afV~f~~~~~A~~A~~~l~~~~~~gr~i~V~~a   88 (96)
T d1fjca_          14 RAARTLLAKNLSFNITEDELKEVFEDALEIRLVS-----QDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYT   88 (96)
T ss_dssp             TGGGEEEEESCCSSCCHHHHHHHHCSEEEECCEE-----ETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEEC
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcccceeee-----ecCccccEEEEEeCCHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence            3568999999999999999999999999987664     24789999999999999999999999999999999999999


Q ss_pred             CC
Q 026963           98 SQ   99 (230)
Q Consensus        98 ~e   99 (230)
                      .+
T Consensus        89 ~~   90 (96)
T d1fjca_          89 GE   90 (96)
T ss_dssp             SS
T ss_pred             CC
Confidence            53

>d2cq1a1 d.58.7.1 (A:51-138) Polypyrimidine tract-binding protein 2, PTBP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein 2, PTBP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=6.4e-19  Score=128.95  Aligned_cols=77  Identities=13%  Similarity=0.176  Sum_probs=70.5

Q ss_pred             cCCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHh--cCceeCCceeEE
Q 026963           17 CDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKL--DEFVFLGNRLKV   94 (230)
Q Consensus        17 ~~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~L--nG~~f~Gr~L~V   94 (230)
                      ..||++|||+|||..+++++|+++|++||.|.++.++.+      +|+|||+|.+.++|..|++.|  ++..+.|++|+|
T Consensus         5 ~~Ps~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~~~~~------~~~afV~f~~~e~A~~a~~~~~~~~~~~~g~~l~v   78 (88)
T d2cq1a1           5 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYI   78 (88)
T ss_dssp             SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHhccccccccccccc------ceEEEEEeCCHHHHHHHHHHHccCCCccCCCEEEE
Confidence            458999999999999999999999999999999998865      489999999999999999965  677999999999


Q ss_pred             EecCC
Q 026963           95 SYASQ   99 (230)
Q Consensus        95 syA~e   99 (230)
                      .||..
T Consensus        79 ~~sk~   83 (88)
T d2cq1a1          79 QYSNH   83 (88)
T ss_dssp             EECSC
T ss_pred             EECCC
Confidence            99953

>d2adba1 d.58.7.1 (A:177-284) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=2.2e-19  Score=136.17  Aligned_cols=76  Identities=17%  Similarity=0.164  Sum_probs=69.5

Q ss_pred             CCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeC--CceeEEEe
Q 026963           19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFL--GNRLKVSY   96 (230)
Q Consensus        19 eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~--Gr~L~Vsy   96 (230)
                      +..+|||+|||+.+++++|+++|++||+|.+|.++.+    +.+|+|||+|.++++|..|++.|||..++  |..|+|.|
T Consensus         6 ~~~~v~V~NL~~~vte~~L~~~F~~~G~i~~~~i~~~----~~~g~aFV~f~~~e~A~~Ai~~ln~~~l~~~~~~l~v~~   81 (108)
T d2adba1           6 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDF   81 (108)
T ss_dssp             CEEEEESCSCCSTTHHHHHHHHHTTTSCEEEEEEEEE----TTEEEEEEEESCHHHHHHHHHHHHSCCSSTTCCCCEEEE
T ss_pred             CeEEEEEeCcCCCCCHHHHHHHHccCCcEEEEEEEee----CCCCeEEEEECCHHHHHHHHHHHCCCEeccCCcEEEEEe
Confidence            3457899999999999999999999999999999876    35899999999999999999999999995  67899999


Q ss_pred             cC
Q 026963           97 AS   98 (230)
Q Consensus        97 A~   98 (230)
                      +.
T Consensus        82 s~   83 (108)
T d2adba1          82 SK   83 (108)
T ss_dssp             CS
T ss_pred             cC
Confidence            94

>d3begb1 d.58.7.1 (B:121-207) Splicing factor, arginine/serine-rich 1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor, arginine/serine-rich 1, SFRS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=1.3e-19  Score=132.82  Aligned_cols=70  Identities=21%  Similarity=0.294  Sum_probs=66.9

Q ss_pred             eEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEecC
Q 026963           22 YLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYAS   98 (230)
Q Consensus        22 ~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA~   98 (230)
                      .|||+|||+.++++||+++|++||+|.+|.+..+       |||||+|.+.++|..|++.|||..|.|+.|+|.|+.
T Consensus         2 rvfV~nlp~~~~~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~i~v~~~~   71 (87)
T d3begb1           2 RVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIR   71 (87)
T ss_dssp             CEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCE
T ss_pred             eEEEECCCCcCCHHHHHHHHhhhccccccccccc-------ceeeEEeCCHHHHHHHHHHhCCCEECCcEeEEeEEe
Confidence            5999999999999999999999999999998765       899999999999999999999999999999999983

>d1wi8a_ d.58.7.1 (A:) Eukaryotic translation initiation factor 4B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Eukaryotic translation initiation factor 4B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=4.5e-19  Score=133.00  Aligned_cols=78  Identities=14%  Similarity=0.169  Sum_probs=70.0

Q ss_pred             CCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCC-CCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963           19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAE-DCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA   97 (230)
Q Consensus        19 eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~-~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA   97 (230)
                      ++.+|||+|||+.++++||+++|+.|| |.++.++.+. .++.++|||||+|.+.++|+.|+ .|||+.|.|+.|+|.||
T Consensus        14 p~~~v~V~nLp~~~te~~l~~~f~~~g-~~~~~~~~~~~~~g~~~g~afV~f~~~e~a~~~~-~~~~~~~~gr~l~V~~a   91 (104)
T d1wi8a_          14 PPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDVA   91 (104)
T ss_dssp             SCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEEC
T ss_pred             CCCEEEEeCCCCcCCHHHHHHHHHHhc-cccceeeeeeccCCCcceeeeEEECCHHHHHHHH-HcCCCEECCEEEEEEEC
Confidence            567899999999999999999999999 6777776654 57899999999999999998666 69999999999999999


Q ss_pred             C
Q 026963           98 S   98 (230)
Q Consensus        98 ~   98 (230)
                      .
T Consensus        92 ~   92 (104)
T d1wi8a_          92 D   92 (104)
T ss_dssp             C
T ss_pred             C
Confidence            4

>d1wi6a1 d.58.7.1 (A:69-143) Ribonucleoprotein PTB-binding 1, Raver-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Ribonucleoprotein PTB-binding 1, Raver-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.76  E-value=9.2e-19  Score=125.59  Aligned_cols=70  Identities=16%  Similarity=0.287  Sum_probs=63.8

Q ss_pred             EEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEecCC
Q 026963           23 LIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYASQ   99 (230)
Q Consensus        23 LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA~e   99 (230)
                      |||+|||..++++||+++|++|| +..+.+      ++++|||||.|.+.++|..|++.|||+.|.|++|+|+|||.
T Consensus         1 i~V~nLp~~~t~~~l~~~F~~~g-~~~~~~------~~~~g~afv~f~~~~~A~~Ai~~ln~~~~~g~~l~V~~a~~   70 (75)
T d1wi6a1           1 ILIRGLPGDVTNQEVHDLLSDYE-LKYCFV------DKYKGTAFVTLLNGEQAEAAINTFHQSRLRERELSVQLQPT   70 (75)
T ss_dssp             EEEECCCTTCCHHHHHHHTTTSC-EEEEEE------ETTTTEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEECCS
T ss_pred             CEEeCCCCcCCHHHHHHHHhccc-ccceee------cccceeEEEEECCHHHHHHHHHHhCCccCCCCEEEEEEeCC
Confidence            79999999999999999999999 555554      35679999999999999999999999999999999999953

>d2ghpa2 d.58.7.1 (A:41-115) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: U4/U6 snRNA-associated-splicing factor PRP24
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.76  E-value=9.3e-19  Score=125.57  Aligned_cols=74  Identities=22%  Similarity=0.163  Sum_probs=68.4

Q ss_pred             CeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963           21 RYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA   97 (230)
Q Consensus        21 ~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA   97 (230)
                      ++|||+|||+.+++++|+++|++||+|.+|.++.++.+  .+|||||+|.+.++|..|+ .|||+.|.|++|.|+.+
T Consensus         1 Ttv~V~nlp~~~t~~~l~~~F~~~G~I~~v~~~~~~~~--~~~~afV~F~~~~~a~~Al-~~~~~~i~g~~i~V~~~   74 (75)
T d2ghpa2           1 TTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKK--NFRFARIEFARYDGALAAI-TKTHKVVGQNEIIVSHL   74 (75)
T ss_dssp             CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTS--SSEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEEC
T ss_pred             CEEEEECCCCCCCHHHHHHHHhcCCceEEEEEEeeccc--cceEEEEEEcchHHhHHHH-HhcCcEECCEEEEEEEC
Confidence            57999999999999999999999999999999988753  4689999999999999998 58999999999999865

>d1x4da1 d.58.7.1 (A:8-96) Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Matrin 3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.76  E-value=7.9e-19  Score=129.89  Aligned_cols=77  Identities=16%  Similarity=0.237  Sum_probs=69.4

Q ss_pred             cCCCCeEEEcCCCCC-CCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHh--cCceeCCceeE
Q 026963           17 CDESRYLIVRNVPSL-GCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKL--DEFVFLGNRLK   93 (230)
Q Consensus        17 ~~eS~~LyV~NLP~~-~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~L--nG~~f~Gr~L~   93 (230)
                      .++|++|||+|||.. +|++||.+||++||+|.+|.++.+      +++|||+|++.++|..|++.|  ++..+.|++|+
T Consensus         5 ~~~sr~v~v~nl~~~~~t~~eL~~lF~~fG~I~~i~i~~~------k~~afV~f~~~~~A~~A~~~l~~~~~~~~gr~l~   78 (89)
T d1x4da1           5 VETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVR   78 (89)
T ss_dssp             CCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECE
T ss_pred             CCCCcEEEEECCCCCcCCHHHHHHHHHhhCCeEEEEeecc------ceEEEEEEcchhhHHHHHHHHhhCCCccCCceEE
Confidence            357899999999985 678999999999999999999876      479999999999999999966  68889999999


Q ss_pred             EEecCC
Q 026963           94 VSYASQ   99 (230)
Q Consensus        94 VsyA~e   99 (230)
                      |+||..
T Consensus        79 V~~s~~   84 (89)
T d1x4da1          79 VHLSQK   84 (89)
T ss_dssp             EEEECC
T ss_pred             EEECCC
Confidence            999953

>d1wf0a_ d.58.7.1 (A:) TAR DNA-binding protein 43, TDP-43 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: TAR DNA-binding protein 43, TDP-43
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=3.5e-19  Score=130.81  Aligned_cols=75  Identities=21%  Similarity=0.294  Sum_probs=68.4

Q ss_pred             CCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963           18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA   97 (230)
Q Consensus        18 ~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA   97 (230)
                      ..+++|||+|||+.++++||+++|++||+|.+|+++.     .++|||||+|.+.++|+.|+.  +++.|.|++|+|.+|
T Consensus         3 ~~s~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~-----~~~gfafV~f~~~~~a~~a~~--~~~~i~g~~l~v~~a   75 (88)
T d1wf0a_           3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPK-----PFRAFAFVTFADDQIAQSLCG--EDLIIKGISVHISNA   75 (88)
T ss_dssp             SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCS-----SCCSCCEEECSCHHHHHHTTT--CEEEETTEEEEEECC
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEee-----ccCceEEEEECCHHHHHHHHh--CCCEECCEEeEEEeC
Confidence            4578999999999999999999999999999998764     467999999999999999985  899999999999999


Q ss_pred             CC
Q 026963           98 SQ   99 (230)
Q Consensus        98 ~e   99 (230)
                      .+
T Consensus        76 ~~   77 (88)
T d1wf0a_          76 EP   77 (88)
T ss_dssp             CC
T ss_pred             CC
Confidence            43

>d1wg5a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H' {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoprotein H'
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=1.6e-18  Score=130.66  Aligned_cols=80  Identities=11%  Similarity=0.109  Sum_probs=74.1

Q ss_pred             CCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963           18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA   97 (230)
Q Consensus        18 ~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA   97 (230)
                      .++.+|||+|||+.++++||+++|+.||.|..+.++.+..++.++|||||.|.+.++|..|++ +|+..|.|+.|+|.++
T Consensus        13 ~~~~~v~v~nLP~~~te~dI~~~F~~~g~v~~~v~~~~~~~~~~kG~afV~F~~~e~a~~a~~-~~~~~i~gR~i~V~~~   91 (104)
T d1wg5a_          13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALK-KHKERIGHRYIEIFKS   91 (104)
T ss_dssp             SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHT-TTTCCSSSSCCEEEEE
T ss_pred             CCCcEEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCcceEEEEEeCCHHHHHHHHh-hCCCEEcceEEEEEEC
Confidence            356689999999999999999999999999987777777889999999999999999999996 9999999999999999


Q ss_pred             C
Q 026963           98 S   98 (230)
Q Consensus        98 ~   98 (230)
                      .
T Consensus        92 ~   92 (104)
T d1wg5a_          92 S   92 (104)
T ss_dssp             C
T ss_pred             C
Confidence            4

>d1x4fa1 d.58.7.1 (A:8-106) Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Matrin 3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.75  E-value=1.4e-18  Score=130.56  Aligned_cols=81  Identities=21%  Similarity=0.265  Sum_probs=71.8

Q ss_pred             eeccCCCCeEEEcCCCCC-CCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHH--HhcCceeCCc
Q 026963           14 YTVCDESRYLIVRNVPSL-GCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKR--KLDEFVFLGN   90 (230)
Q Consensus        14 ytv~~eS~~LyV~NLP~~-~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~--~LnG~~f~Gr   90 (230)
                      -....++++|||+|||.. +++++|.++|++||+|.+|.++.+      +|+|||+|.+.++|..|++  .+++..|.|+
T Consensus        12 ~~~~~~~~~l~v~nLp~~~~te~~l~~~F~~fG~V~~v~~~~~------k~~afV~f~~~~~A~~Ai~~~~~~~~~~~gr   85 (99)
T d1x4fa1          12 DQKQELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM------KSQAFIEMETREDAMAMVDHCLKKALWFQGR   85 (99)
T ss_dssp             CCSSCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHHHSCCCSSSS
T ss_pred             ccCCCCCCEEEEeCCcCCccCHHHHHhhhccccceeEEEEeec------CCcEEEEecchHHHHHHHHHHhcCCceECCE
Confidence            334567889999999975 789999999999999999999865      5899999999999999998  5788899999


Q ss_pred             eeEEEecCCC
Q 026963           91 RLKVSYASQF  100 (230)
Q Consensus        91 ~L~VsyA~e~  100 (230)
                      +|+|+||+..
T Consensus        86 ~l~V~~s~~~   95 (99)
T d1x4fa1          86 CVKVDLSEKY   95 (99)
T ss_dssp             CCEEEEECSC
T ss_pred             EEEEEEcCCc
Confidence            9999999543

>d1wexa_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein L-like {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoprotein L-like
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.75  E-value=2.4e-18  Score=129.80  Aligned_cols=77  Identities=16%  Similarity=0.157  Sum_probs=69.8

Q ss_pred             ccCCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhc--CceeCCceeE
Q 026963           16 VCDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLD--EFVFLGNRLK   93 (230)
Q Consensus        16 v~~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~Ln--G~~f~Gr~L~   93 (230)
                      ...+|++|||+|||+.++++||+++|++||+|.+|.+..+      +|+|||+|++.++|+.|++.|+  +..+.|++|+
T Consensus        11 ~~~ps~~l~v~nlp~~~te~~l~~~F~~fG~I~~~~~~~~------k~~AfV~f~~~e~A~~ai~~~~~~~~~~~g~~l~   84 (104)
T d1wexa_          11 KVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAF   84 (104)
T ss_dssp             CCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCE
T ss_pred             cCCCCCEEEEeCCCCCCCHHHHHHhhhhcccceEEEEEec------ceeEEEEeCCHHHHHHHHHHHcCCCcEEeeEEEE
Confidence            4467999999999999999999999999999999999764      5899999999999999999884  5567899999


Q ss_pred             EEecC
Q 026963           94 VSYAS   98 (230)
Q Consensus        94 VsyA~   98 (230)
                      |+||.
T Consensus        85 v~~s~   89 (104)
T d1wexa_          85 FNYST   89 (104)
T ss_dssp             EEECS
T ss_pred             EEEcC
Confidence            99994

>d1wg4a_ d.58.7.1 (A:) Splicing factor, arginine/serine-rich 9 (SFRS9) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor, arginine/serine-rich 9 (SFRS9)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.75  E-value=1.2e-18  Score=130.91  Aligned_cols=73  Identities=21%  Similarity=0.289  Sum_probs=68.7

Q ss_pred             CCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEecC
Q 026963           19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYAS   98 (230)
Q Consensus        19 eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA~   98 (230)
                      ...+|||+|||+.++++||+++|++||+|+.|.+..       +|||||+|.+.++|..|++.|||..|.|+.|+|.|+.
T Consensus        14 ~~~~i~V~Nlp~~~~~~~L~~~F~~~G~v~~~~i~~-------~g~afV~f~~~~~a~~Ai~~lng~~~~g~~i~v~~~~   86 (98)
T d1wg4a_          14 SDFRVLVSGLPPSGSWQDLKDHMREAGDVCYADVQK-------DGMGMVEYLRKEDMEYALRKLDDTKFRSHEGETSYIR   86 (98)
T ss_dssp             CSCEEEEECCCSSCCHHHHHHHHTTSSCEEEEEEET-------TTEEEEEESSHHHHHHHHHHHSSEEEECTTSCEEEEE
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHhhcccccccccc-------cceEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEEe
Confidence            456899999999999999999999999999999875       3899999999999999999999999999999999984

>d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=7.1e-18  Score=135.00  Aligned_cols=79  Identities=16%  Similarity=0.141  Sum_probs=75.8

Q ss_pred             CCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963           18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA   97 (230)
Q Consensus        18 ~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA   97 (230)
                      ..+++|||+|||+.+++++|.++|+.||+|..+.++.+..++.++|||||.|.+.++|..|+. ++|..+.|++|+|.+|
T Consensus        95 ~~~~~i~V~~lp~~~te~~L~~~f~~~G~v~~~~i~~~~~~~~~~g~~fV~f~~~e~A~~Al~-~~~~~~~G~~i~V~~A  173 (183)
T d1u1qa_          95 LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVI-QKYHTVNGHNCEVRKA  173 (183)
T ss_dssp             CCCSEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHT-SSCEEETTEEEEEEEC
T ss_pred             cccceeEEccCCCcCCHHHHhhhhccCCceeeeeeecccccCccceeEEEEECCHHHHHHHHH-hCCCeECCEEEEEEec
Confidence            456899999999999999999999999999999999999999999999999999999999997 7999999999999999

>d1wela1 d.58.7.1 (A:412-523) RNA-binding protein 12 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 12
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=2.8e-18  Score=131.23  Aligned_cols=79  Identities=11%  Similarity=0.098  Sum_probs=72.7

Q ss_pred             CCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963           18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA   97 (230)
Q Consensus        18 ~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA   97 (230)
                      .+..+|||+|||+.++++||.++|+.||.|..+.++.+..+|.++|+|||.|.+.++|..|+. |||..|.|+.|.|..+
T Consensus        16 ~~~~~i~v~nLp~~~t~~di~~~F~~~g~~~~~~~~~~~~~g~~~G~afVeF~~~e~a~~al~-~~~~~i~gR~i~V~~~   94 (112)
T d1wela1          16 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPI   94 (112)
T ss_dssp             CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEE
T ss_pred             CCCeEEEEecCCCcCcHHHHhhHHhhccccccceeeecCcccceeeEEEEEECCHHHHHHHHH-cCCCcCCCEEEEEEEc
Confidence            356689999999999999999999999999887666666789999999999999999999996 9999999999999998

>d1weza_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H' {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoprotein H'
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=4.7e-18  Score=127.76  Aligned_cols=78  Identities=13%  Similarity=0.100  Sum_probs=70.4

Q ss_pred             CCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963           18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA   97 (230)
Q Consensus        18 ~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA   97 (230)
                      .++.+|||+|||+.++++||+++|+.||. .+|.++.+. ++.++|||||+|.+.++|+.|++ |||+.|.|+.|+|.++
T Consensus        13 ~~~~~v~v~nLp~~~te~dl~~~F~~~~~-~~v~~~~~~-~g~~~G~afVeF~~~~~a~~Al~-~~~~~i~gR~I~V~~s   89 (102)
T d1weza_          13 TTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFLN   89 (102)
T ss_dssp             SSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEEE
T ss_pred             CCCCEEEEeCCCCcCCHHHHHHHHhccCc-ceeeeEEec-CCcceEEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEc
Confidence            45668999999999999999999999985 567777775 48999999999999999999986 8999999999999998


Q ss_pred             C
Q 026963           98 S   98 (230)
Q Consensus        98 ~   98 (230)
                      .
T Consensus        90 ~   90 (102)
T d1weza_          90 S   90 (102)
T ss_dssp             C
T ss_pred             C
Confidence            4

>d1weya_ d.58.7.1 (A:) Calcipressin-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Calcipressin-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.71  E-value=3.9e-18  Score=129.87  Aligned_cols=75  Identities=23%  Similarity=0.193  Sum_probs=67.5

Q ss_pred             CCCCeEEEcCCCCCC-CH----HHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCcee
Q 026963           18 DESRYLIVRNVPSLG-CG----DDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRL   92 (230)
Q Consensus        18 ~eS~~LyV~NLP~~~-te----edL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L   92 (230)
                      ..+.+|||+||+..+ ++    ++|+++|++||+|++|.+++.      +|+|||.|.+.++|..|++.|||+.|.|++|
T Consensus         3 ~~~~~L~v~nl~~~v~~~d~~k~~l~~lF~~~G~i~~~~~~k~------~~~afV~f~~~~~A~~Ai~~lng~~~~g~~l   76 (104)
T d1weya_           3 SGSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS------FKRVRINFSNPLSAADARLRLHKTEFLGKEM   76 (104)
T ss_dssp             SCCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETT------TTEEEEECSSTTHHHHHHHTSTTSEETTEEC
T ss_pred             CCCceEEEEeCCchhcCcHHHHHHHHHHhcccccceEEEEecC------CCEEEEEECCHHHHHHHHHHhcccccCCCEe
Confidence            357899999999865 32    569999999999999999854      6899999999999999999999999999999


Q ss_pred             EEEecC
Q 026963           93 KVSYAS   98 (230)
Q Consensus        93 ~VsyA~   98 (230)
                      +|.||.
T Consensus        77 ~v~~a~   82 (104)
T d1weya_          77 KLYFAQ   82 (104)
T ss_dssp             EEECCC
T ss_pred             EEeecc
Confidence            999994

>d1jmta_ d.58.7.3 (A:) U2AF35 (35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Splicing factor U2AF subunits
domain: U2AF35 (35 KDa subunit)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=6.9e-19  Score=134.13  Aligned_cols=77  Identities=18%  Similarity=0.204  Sum_probs=71.5

Q ss_pred             CeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEecC
Q 026963           21 RYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYAS   98 (230)
Q Consensus        21 ~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA~   98 (230)
                      +.++|++++...++++|.++|++||+|++|+|+++ .++.++|+|||+|.+.++|..|+..|||+.|.|++|+|+|.|
T Consensus        28 ~~~~v~~~~~~~~ed~l~e~f~k~G~I~~v~I~~~-~~~~~~G~~fV~f~~~~~A~~Ai~~lng~~~~gr~i~v~~sP  104 (104)
T d1jmta_          28 SDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDN-LGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAELSP  104 (104)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCS-SSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECCEEECC
T ss_pred             chHHhhhhhhhhhHHHHHHHhccCCCEEEEEeecC-CCCCEeeEEEEEEechhHHHHHHHHHCCCEECCEEEEEEECC
Confidence            35778888877888999999999999999999877 579999999999999999999999999999999999999986

>d1u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor U2AF 65 KDa subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=3.2e-19  Score=130.86  Aligned_cols=79  Identities=20%  Similarity=0.321  Sum_probs=70.7

Q ss_pred             CeEEEcCCCCCCCHHHHHHhhccCCcceEEEeec-----CCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEE
Q 026963           21 RYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMD-----AEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVS   95 (230)
Q Consensus        21 ~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~-----d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~Vs   95 (230)
                      ++|||+|||..++++||.++|++||.|..+.+..     +..++.++|||||.|.+.++|..|+. |||+.|.|++|+|.
T Consensus         2 RrlyVgNLp~~~te~~l~~~F~~~g~~~~~~~~~~~~~~~~~~~~~kg~afV~f~~~e~a~~a~~-l~g~~~~Gr~l~V~   80 (90)
T d1u2fa_           2 RRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMA-FDGIIFQGQSLKIR   80 (90)
T ss_dssp             CEEEECSCCTTCCTTHHHHHHHHHHTTTTSCCSSSCSEEECCEETTTTEEEEEESSCTTTTTGGG-GSSCCSSSSCCCCB
T ss_pred             CEEEEcCCCCccchHHHHHHHHhhCcEEEEEEeccceeeecccCCCceEEEEEeCCHHHHHHHHh-hCCcEECCEEEEEC
Confidence            6899999999999999999999999998877643     44678899999999999999999985 99999999999998


Q ss_pred             ecCCC
Q 026963           96 YASQF  100 (230)
Q Consensus        96 yA~e~  100 (230)
                      .+.++
T Consensus        81 r~k~~   85 (90)
T d1u2fa_          81 RPHDY   85 (90)
T ss_dssp             CTTCC
T ss_pred             CCCCC
Confidence            76544

>d2cq2a1 d.58.7.1 (A:25-125) Alkylation repair AlkB homolog 8, ALKBH8 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Alkylation repair AlkB homolog 8, ALKBH8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=1.4e-16  Score=120.46  Aligned_cols=77  Identities=17%  Similarity=0.192  Sum_probs=66.7

Q ss_pred             eccCCCCeEEEcC--CCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeC-Cc-
Q 026963           15 TVCDESRYLIVRN--VPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFL-GN-   90 (230)
Q Consensus        15 tv~~eS~~LyV~N--LP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~-Gr-   90 (230)
                      +.+.++++|+|.|  ||..+++++|+++|++||+|++|.++.+      +|||||+|.+.++|..|++.|||+.+. |. 
T Consensus        13 ~~~~pt~~l~V~ng~L~~~vte~~L~~~F~~~G~i~~i~~~~~------k~~aFV~f~~~e~A~~A~~~lng~~i~~~~~   86 (101)
T d2cq2a1          13 TVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN------KPYSFARYRTTEESKRAYVTLNGKEVVDDLG   86 (101)
T ss_dssp             CCSSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT------CSCEEEEESSHHHHHHHHHHTTTCEEECTTS
T ss_pred             cCCCCCceEEEECCCCCCCCCHHHHHHHHHhhCcccEEeeccC------ccEEEEEECCHHHHHHHHHHhCCCCCCCCCC
Confidence            4567889999966  9999999999999999999999998865      589999999999999999999999884 32 


Q ss_pred             ---eeEEEec
Q 026963           91 ---RLKVSYA   97 (230)
Q Consensus        91 ---~L~VsyA   97 (230)
                         ++.++|.
T Consensus        87 ~~i~~~~~~~   96 (101)
T d2cq2a1          87 QKITLYLNFV   96 (101)
T ss_dssp             CEEECEEEEE
T ss_pred             cEEEEEEEee
Confidence               4555666

>d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=1.7e-18  Score=138.69  Aligned_cols=159  Identities=11%  Similarity=0.100  Sum_probs=109.6

Q ss_pred             CCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEecC
Q 026963           19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYAS   98 (230)
Q Consensus        19 eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA~   98 (230)
                      +.++|||+|||+.+++++|+++|++||+|.++.++.+..++.++|||||.|.+.++|..|+..+ +..+.++.+.+....
T Consensus         5 ~~r~lfV~nLp~~~te~~L~~~F~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~-~~~~~~~~~~~~~~~   83 (183)
T d1u1qa_           5 QLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNAR-PHKVDGRVVEPKRAV   83 (183)
T ss_dssp             HHHEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTC-SCEETTEECEEEECC
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHcCCEEEEEeeecccCCCccCceecccCCHHHHHHHHHhc-CCcccccchhhhhhh
Confidence            3579999999999999999999999999999999999999999999999999999999998865 556777888887663


Q ss_pred             CCCChHHHHHHHHHHHHHHHHHhh-cCCCCCCCcccccc-cCCCCCCCCCCCCcchhhhhhhhcccccccccccccCCCC
Q 026963           99 QFESLADTKDKLETRRKEVLARLN-SGRSKVPNIHSSVD-LGEPSLVTAPLQPNLVSEQITSWQRASSESQRISHVNESP  176 (230)
Q Consensus        99 e~Es~~d~r~Kl~~rr~ev~~Rl~-~n~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (230)
                      ..+..........      ..++- .|+|...++...++ +...|   .+.++.++.-+-+...++ .+|..|....++.
T Consensus        84 ~~~~~~~~~~~~~------~~~i~V~~lp~~~te~~L~~~f~~~G---~v~~~~i~~~~~~~~~~g-~~fV~f~~~e~A~  153 (183)
T d1u1qa_          84 SREDSQRPGAHLT------VKKIFVGGIKEDTEEHHLRDYFEQYG---KIEVIEIMTDRGSGKKRG-FAFVTFDDHDSVD  153 (183)
T ss_dssp             CTTGGGSTTTTCC------CSEEEEECCCTTCCHHHHHHHHGGGS---CEEEEEEEECTTTCCEEE-EEEEEESCHHHHH
T ss_pred             hcccccccccccc------cceeEEccCCCcCCHHHHhhhhccCC---ceeeeeeecccccCccce-eEEEEECCHHHHH
Confidence            2221110000000      01111 46677776666666 66666   344444443333445566 5777777776666


Q ss_pred             ceeeccCcccccc
Q 026963          177 ITRVSSDKDYFAS  189 (230)
Q Consensus       177 ~~~~~~~~~~~~~  189 (230)
                      -+. .++...|.|
T Consensus       154 ~Al-~~~~~~~~G  165 (183)
T d1u1qa_         154 KIV-IQKYHTVNG  165 (183)
T ss_dssp             HHH-TSSCEEETT
T ss_pred             HHH-HhCCCeECC
Confidence            553 455555554

>d1owxa_ d.58.7.1 (A:) Lupus LA protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Lupus LA protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=3.5e-16  Score=119.87  Aligned_cols=71  Identities=15%  Similarity=0.153  Sum_probs=65.3

Q ss_pred             eEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccH-hHHHHHHHHhcCceeCCceeEEEecC
Q 026963           22 YLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLF-SNARFAKRKLDEFVFLGNRLKVSYAS   98 (230)
Q Consensus        22 ~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~-edA~~A~~~LnG~~f~Gr~L~VsyA~   98 (230)
                      .+||+|||+.+++++|+++|++||+|..|.++.+      +|||||.|.+. ++|..|+..|||..+.++.+.|.++.
T Consensus        13 ~~fvgnL~~~~tee~Lk~~F~~fG~V~~v~i~~~------kg~gfV~F~~~~~~A~~a~~~~~~~~l~~~~~~v~~~~   84 (113)
T d1owxa_          13 LKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRG------AKEGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEV   84 (113)
T ss_dssp             EEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTT------CSEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEE
T ss_pred             EEEECCCCCCCCHHHHHHHHHhcCChheEEEecC------CceEEEEecCcHHHHHHHHHHhcCCceecCceEEEEee
Confidence            4699999999999999999999999999999865      69999999996 78999999999999999998888873

>d2dita1 d.58.7.1 (A:8-106) HIV Tat-specific factor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: HIV Tat-specific factor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=1.3e-15  Score=114.38  Aligned_cols=77  Identities=22%  Similarity=0.257  Sum_probs=67.8

Q ss_pred             CCCCeEEEcCC--CCCC---------CHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCce
Q 026963           18 DESRYLIVRNV--PSLG---------CGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFV   86 (230)
Q Consensus        18 ~eS~~LyV~NL--P~~~---------teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~   86 (230)
                      ..+++|+|+||  |...         .++||++.|++||+|.+|.+..+    .++|+|||+|.+.++|..|+..|||..
T Consensus         6 ~~~r~v~l~nmf~~~~~~~~~~~~~~i~edv~~~~~~~G~V~~v~~~~~----~~~G~~fV~f~~~e~A~~A~~~lng~~   81 (99)
T d2dita1           6 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDR----HPDGVASVSFRDPEEADYCIQTLDGRW   81 (99)
T ss_dssp             CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETT----CTTCEEEEECSCHHHHHHHHHHSTTCE
T ss_pred             CCccEEEEccCCCHHHhhcchHHHHHHHHHHHHHhcCcccEEEEeccCC----CCccEEEEEECCHHHHHHHHHHhCCcE
Confidence            46889999998  5432         23789999999999999998765    467999999999999999999999999


Q ss_pred             eCCceeEEEecC
Q 026963           87 FLGNRLKVSYAS   98 (230)
Q Consensus        87 f~Gr~L~VsyA~   98 (230)
                      |.|++|+|+|+.
T Consensus        82 ~~gr~i~v~~~~   93 (99)
T d2dita1          82 FGGRQITAQAWD   93 (99)
T ss_dssp             ETTEECEEEECC
T ss_pred             ECCEEEEEEEeC
Confidence            999999999984

>d1o0pa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor U2AF 65 KDa subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=2.8e-15  Score=113.23  Aligned_cols=81  Identities=17%  Similarity=0.187  Sum_probs=70.6

Q ss_pred             CCCCeEEEcCC--CCCCC--------HHHHHHhhccCCcceEEEeecCCCCC--CceeEEEEEEccHhHHHHHHHHhcCc
Q 026963           18 DESRYLIVRNV--PSLGC--------GDDLLKLFATYGDIEECKPMDAEDCD--PFTDVYFIKFRLFSNARFAKRKLDEF   85 (230)
Q Consensus        18 ~eS~~LyV~NL--P~~~t--------eedL~~LFS~fG~I~~v~il~d~~tg--ksrG~AFV~F~d~edA~~A~~~LnG~   85 (230)
                      .||+.|.|+|+  |....        .+||++.|++||+|++|.|+++.++.  ...|++||.|.+.++|..|+..|||.
T Consensus         2 ~Ps~vl~l~N~~~~~~l~~~~~~~~i~edi~~e~~k~G~v~~v~I~~~~~~~~~~~~g~vfV~f~~~e~A~~A~~~l~Gr   81 (104)
T d1o0pa_           2 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR   81 (104)
T ss_dssp             CCCSEEEEESSCCTTTTTSHHHHHHHHHHHHHHHTTTSCEEEEECCCCTTSSSCTTCCEEEEEESCHHHHHHHHHHHSSC
T ss_pred             CCCcEEEEeCCCCHHHcCCchhHHHHHHHHHHHhcccCceEEEEEeecCCCCccCCceEEEEEECCHHHHHHHHHHHCCC
Confidence            47899999999  55432        26789999999999999998876553  45699999999999999999999999


Q ss_pred             eeCCceeEEEecC
Q 026963           86 VFLGNRLKVSYAS   98 (230)
Q Consensus        86 ~f~Gr~L~VsyA~   98 (230)
                      .|.|++|+|.|++
T Consensus        82 ~f~gR~v~v~f~~   94 (104)
T d1o0pa_          82 KFANRVVVTKYCD   94 (104)
T ss_dssp             CSSSSCCEEEEEC
T ss_pred             EECCeEEEEEEcC
Confidence            9999999999994

>d1wwha1 d.58.7.1 (A:169-249) Nucleoporin 35 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleoporin 35
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.41  E-value=1.8e-13  Score=99.84  Aligned_cols=70  Identities=21%  Similarity=0.236  Sum_probs=60.1

Q ss_pred             CCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCce-eEEEec
Q 026963           20 SRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNR-LKVSYA   97 (230)
Q Consensus        20 S~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~-L~VsyA   97 (230)
                      ...|+|.++|+..++ ++..+|++||+|.++.+..      .+|||||.|.+.++|.+|++ +||..|.|+. +.|..+
T Consensus         4 ~~wV~V~G~p~~~~~-~il~~F~~~G~I~~~~~~~------~~~~~fV~f~~~~~A~~Al~-~nG~~~~g~~~vgV~~~   74 (81)
T d1wwha1           4 DTWVTVFGFPQASAS-YILLQFAQYGNILKHVMSN------TGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKPC   74 (81)
T ss_dssp             GGEEEEECCCGGGHH-HHHHHHHTTSCEEEEEECS------SSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEEC
T ss_pred             ccEEEEECCChHHHH-HHHHHHHhhhhhheEEecC------CCCEEEEEEcccHHHHHHHh-cCCCeECCcEEEEEEeC
Confidence            467999999987665 5556899999999998754      36999999999999999995 9999999985 568877

>d1uw4a_ d.58.7.4 (A:) RNA processing protein UPF3x, RRM domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Smg-4/UPF3
domain: RNA processing protein UPF3x, RRM domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.73  E-value=0.00011  Score=54.25  Aligned_cols=79  Identities=15%  Similarity=0.265  Sum_probs=64.6

Q ss_pred             CeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCC--CceeEEEEEEccHhHHHHHHHHhcCceeCCc-----eeE
Q 026963           21 RYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCD--PFTDVYFIKFRLFSNARFAKRKLDEFVFLGN-----RLK   93 (230)
Q Consensus        21 ~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tg--ksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr-----~L~   93 (230)
                      +.|.||.||+..+++++.+.++..|++.-..-.....+.  ..-.-|+|.|.+.++...-.+..||+.|.+.     +-.
T Consensus         2 tKvVvRrLPP~Lte~~F~~~l~~~~~~d~~~f~~Gk~s~~~~~~SRAYi~F~~~~~v~~F~~~f~g~~F~D~~g~~~~a~   81 (91)
T d1uw4a_           2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPAI   81 (91)
T ss_dssp             CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEECE
T ss_pred             ceEEEecCCCCCCHHHHHHHhCCcCceEEEEEeCCCcCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEcCCCCEeeeE
Confidence            468999999999999999999999999876555543321  2225799999999999999999999999753     457


Q ss_pred             EEecCC
Q 026963           94 VSYASQ   99 (230)
Q Consensus        94 VsyA~e   99 (230)
                      |+|||-
T Consensus        82 VE~AP~   87 (91)
T d1uw4a_          82 VEFAPF   87 (91)
T ss_dssp             EEECSS
T ss_pred             EEEcCc
Confidence            999973

>d2dgxa1 d.58.7.1 (A:563-635) Limkain-b1, LKAP {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Limkain-b1, LKAP
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.62  E-value=3.2e-05  Score=55.24  Aligned_cols=61  Identities=18%  Similarity=0.156  Sum_probs=53.4

Q ss_pred             HHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963           34 GDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA   97 (230)
Q Consensus        34 eedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA   97 (230)
                      .+-|...|+++|+|.++.+...-+ +  .-.|-|...+.++|..|+..|+-+.+.++.|.|+|+
T Consensus        10 qq~L~~~f~~h~~V~sv~l~~~~d-g--~~~A~V~v~~~q~A~~~v~~LhR~KiG~KRI~Vs~~   70 (73)
T d2dgxa1          10 QQLLQEAFARHGKVKSVELSPHTD-Y--QLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSLA   70 (73)
T ss_dssp             HHHHHHHHHHHSCEEEEEECSCCS-T--TCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred             HHHHHHHHHhheeEEEEEEEeccC-C--cEEEEEEcCCHHHHHHHHHHHHHHhcCCeEEEEEEe
Confidence            356889999999999999865422 3  346999999999999999999999999999999998

>d1ufwa_ d.58.7.1 (A:) Synaptojanin 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Synaptojanin 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.11  E-value=0.00035  Score=51.93  Aligned_cols=69  Identities=16%  Similarity=0.169  Sum_probs=55.4

Q ss_pred             CCCeEEEcCCCCCC---------CHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCC
Q 026963           19 ESRYLIVRNVPSLG---------CGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLG   89 (230)
Q Consensus        19 eS~~LyV~NLP~~~---------teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~G   89 (230)
                      +..++.|.=..+..         .-.+|.+.|+.||+|.=++.+.|        ..||+|.+-++|-+|+ .|||.+++|
T Consensus        14 pDgTIvV~i~~~s~e~~~~FDe~l~~~Llq~l~~~GeViLvRFv~d--------~mwVTF~dG~SAL~al-~l~g~~v~G   84 (95)
T d1ufwa_          14 LDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQG--------QMLVTFADSHSALSVL-DVDGMKVKG   84 (95)
T ss_dssp             TTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETT--------EEEEECSCSHHHHHHH-HGGGSEETT
T ss_pred             CCcEEEEEeccCCccccccCCHHHHHHHHHHHhhCCeEEEEEEeCC--------eEEEEECCcHHHHHHh-ccCCeEEcc
Confidence            44567775444222         12679999999999999998865        6999999999999886 589999999


Q ss_pred             ceeEEEe
Q 026963           90 NRLKVSY   96 (230)
Q Consensus        90 r~L~Vsy   96 (230)
                      +.|+|+.
T Consensus        85 ~~l~It~   91 (95)
T d1ufwa_          85 RAVKISG   91 (95)
T ss_dssp             EEEEEEC
T ss_pred             eEEEEec
Confidence            9999984

>d1whva_ d.58.7.1 (A:) Poly(A)-specific ribonuclease PARN {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Poly(A)-specific ribonuclease PARN
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.67  E-value=0.086  Score=39.03  Aligned_cols=55  Identities=18%  Similarity=0.246  Sum_probs=47.0

Q ss_pred             CeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhc
Q 026963           21 RYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLD   83 (230)
Q Consensus        21 ~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~Ln   83 (230)
                      .++|.-..|......||.+||++||.|.---| .|  |     -|||.-.+.++|..++..++
T Consensus        16 dHVf~~tFP~~Wk~~dI~~lFSpfG~V~VswI-dd--T-----Sa~V~L~~~e~~~~v~~~~~   70 (100)
T d1whva_          16 DHVLHVTFPKEWKTSDLYQLFSAFGNIQISWI-DD--T-----SAFVSLSQPEQVQIAVNTSK   70 (100)
T ss_dssp             CSEEEEECCTTCCHHHHHHHHTTTCSCCCEEE-ET--T-----EEEEECSCHHHHHHHHHHHH
T ss_pred             ceeEEEeCCcccchhHHHHHhcCCCceEEEEe-cC--c-----eEEEEecCHHHHHHHHHHhc
Confidence            48999999999999999999999999974444 43  2     69999999999999988766