Citrus Sinensis ID: 027050

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------23
Protein Sequence
MEKVMNMIKPKPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSEDIEEEIEEEVDKVLTAIAGETAAQLPEAVRKERVKQSAQTSRAAQEEDAVAEGIDDEKELEEIRARLAKVRS
Secondary Structure (PSIPRED)
cHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcHHHHHccHHHHHHHcccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
cHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHccccHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mekvmnmikpkpnpqqLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAvdtaldsedIEEEIEEEVDKVLTAIAGETAAQLPEAVRKERVKQSAQTSRAAQEEDAvaegiddeKELEEIRARLAKVRS
Flexible Loop (DISEMBL)
mekvmnmikpkpnpqqllrDWQRKLRQECRNIERQIRDIQREEKNVQKAIkdaakrndlssakslaqelvrsrktvNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSEDIEEEIEEEVDKVLTAIAGEtaaqlpeavrKERVKqsaqtsraaqeedavaegiddekelEEIRARLAKVRS
Low Complexity Region (SEG)
MEKVMNMIKPKPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSedieeeieeeVDKVLTAIAGETAAQLPEAVRKERVKQSAQTSRAAQEEDAVAEGIDDEKELEEIRARLAKVRS
Disordered region (IsUnstruct)
****************************************************************************************ISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEV*************AGVIEEFVN**********************************************************************************
Disordered Region (DISOPRED)
**KV*NMIKPKPN*********************************************LSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIAR****LN*SAEVMKLVNNLMKAPEVAATM***************FV*DAVDTA****DI*EEIEEEVDKVLTAIAGE******************************************IRARLAKVR*
Disordered Region (DISEMBL)
********KPKPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSEDIEEEIEEEVDKVLTAIAGETAAQLPE****************************DEKELEEIRARLAKVRS
Disordered Region (DISPRO)
*EKVMNMIKPKPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSEDIEEEIEEEVDKVLTAIAGETAAQ****************************************ARL*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEKVMNMIKPKPNPQQLxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxNDLSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSEDIEEEIEEEVDKVLTAIAGETAAQLPEAVRKERVKQSAQTSRAAQEEDAVAEGIDDEKELEEIRARLAKVRS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	229	2.2.26 [Sep-21-2011]
Q9FFB3	229	Vacuolar protein sorting-	yes	no	1.0	1.0	0.842	1e-101
Q9LXH5	200	Putative vacuolar protein	no	no	0.868	0.995	0.723	3e-70
Q6NRM7	220	Charged multivesicular bo	N/A	no	0.755	0.786	0.445	6e-38
Q5BKM3	220	Charged multivesicular bo	yes	no	0.755	0.786	0.445	1e-37
Q5RAU5	222	Charged multivesicular bo	yes	no	0.764	0.788	0.465	4e-36
Q8CGS4	223	Charged multivesicular bo	yes	no	0.764	0.784	0.460	4e-36
Q9CQ10	224	Charged multivesicular bo	yes	no	0.764	0.781	0.460	4e-36
Q58CS7	222	Charged multivesicular bo	yes	no	0.764	0.788	0.460	5e-36
Q4R574	222	Charged multivesicular bo	N/A	no	0.764	0.788	0.460	5e-36
Q9Y3E7	222	Charged multivesicular bo	yes	no	0.764	0.788	0.465	5e-36

>sp|Q9FFB3|VP241_ARATH Vacuolar protein sorting-associated protein 24 homolog 1 OS=Arabidopsis thaliana GN=VPS24-1 PE=2 SV=1

 Score =  367 bits (942), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 193/229 (84%), Positives = 220/229 (96%)

Query: 1   MEKVMNMIKPKPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLS 60
           ME+VMN+IKPKP+P+QLLRDWQRKLRQECRNIERQIRDIQ+EE+NVQKAIK+AAKRND+ 
Sbjct: 1   MERVMNIIKPKPDPKQLLRDWQRKLRQECRNIERQIRDIQKEERNVQKAIKEAAKRNDMV 60

Query: 61  SAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLM 120
           SAK+LA+E+V SR+TVNRLYENKAQMNSISMHLGESVAIARTVGHL+KSAEVMKLVNNLM
Sbjct: 61  SAKALAKEIVSSRRTVNRLYENKAQMNSISMHLGESVAIARTVGHLSKSAEVMKLVNNLM 120

Query: 121 KAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSEDIEEEIEEEVDKVLTAIAGETAA 180
           KAP++AATMQEFSKEMTKAGVIEEFVN+A+D ALDSED+EEEI+EEVDKVLTAIAGETAA
Sbjct: 121 KAPQMAATMQEFSKEMTKAGVIEEFVNEAIDNALDSEDMEEEIDEEVDKVLTAIAGETAA 180

Query: 181 QLPEAVRKERVKQSAQTSRAAQEEDAVAEGIDDEKELEEIRARLAKVRS 229
           +LP AVRKER+K  AQ +  ++EE+AVAEG+DDE+ELEEIRARLAKVRS
Sbjct: 181 ELPVAVRKERIKVPAQKASTSREEEAVAEGVDDEEELEEIRARLAKVRS 229

Component of the ESCRT-III complex, which is required for multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. The ESCRT-III complex is probably involved in the concentration of MVB cargo.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9LXH5|VP242_ARATH Putative vacuolar protein sorting-associated protein 24 homolog 2 OS=Arabidopsis thaliana GN=VPS24-2 PE=2 SV=1

 Score =  264 bits (675), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 144/199 (72%), Positives = 169/199 (84%)

Query: 31  NIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQELVRSRKTVNRLYENKAQMNSIS 90
            I+  + DI+REE+NV KAIKD+ KRNDL +AK+LA+E+V SR+TV RLYENKAQ+NSIS
Sbjct: 2   TIKSLLSDIEREERNVHKAIKDSVKRNDLVTAKALAREIVSSRRTVKRLYENKAQVNSIS 61

Query: 91  MHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAV 150
           MHLGES+A A TVG+L+KS EVMKLVN+LMKAPE+A TMQ FSKEMTK GVIEEFV+DAV
Sbjct: 62  MHLGESIATAVTVGNLSKSGEVMKLVNSLMKAPEIAVTMQAFSKEMTKTGVIEEFVSDAV 121

Query: 151 DTALDSEDIEEEIEEEVDKVLTAIAGETAAQLPEAVRKERVKQSAQTSRAAQEEDAVAEG 210
           D ALDSEDIEEEIEEEVDKVLTAIAGETAA+LPEAVRK+++   AQ +     EDA+ EG
Sbjct: 122 DNALDSEDIEEEIEEEVDKVLTAIAGETAAELPEAVRKQKMNVPAQKAETLHGEDAIVEG 181

Query: 211 IDDEKELEEIRARLAKVRS 229
           +D E+ELE IR RLA VRS
Sbjct: 182 VDAEEELEAIRYRLANVRS 200

Component of the ESCRT-III complex, which is required for multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. The ESCRT-III complex is probably involved in the concentration of MVB cargo.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6NRM7|CHMP3_XENLA Charged multivesicular body protein 3 OS=Xenopus laevis GN=chmp3 PE=2 SV=3

 Score =  157 bits (397), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 77/173 (44%), Positives = 119/173 (68%)

Query: 14  PQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQELVRSR 73
           P+ L+ +W  K+R+E R I+RQIRDIQRE++ V+++IK++AK+ +  +   LA+E+V+S+
Sbjct: 12  PKDLVNEWSLKIRKEMRVIDRQIRDIQREQEKVKRSIKESAKKGNREACVILAKEVVQSK 71

Query: 74  KTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFS 133
           K VN+LY +KA MNS+ M +   +A+ R  G L KS EVMK + NL+K PE+ ATM+E S
Sbjct: 72  KAVNKLYASKAHMNSVLMSMKNQLAVLRVSGSLQKSTEVMKAMQNLVKLPEIQATMRELS 131

Query: 134 KEMTKAGVIEEFVNDAVDTALDSEDIEEEIEEEVDKVLTAIAGETAAQLPEAV 186
           KEM KAG+IEE + D  +   D +++EE+ E E+D++L  +      + P  V
Sbjct: 132 KEMMKAGIIEEMLEDTFEGMEDQDEMEEQAEMEIDRILFEVTAGALGKAPSKV 184

Probable core component of the endosomal sorting required for transport complex III (ESCRT-III) which is involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. MVBs contain intraluminal vesicles (ILVs) that are generated by invagination and scission from the limiting membrane of the endosome and mostly are delivered to lysosomes enabling degradation of membrane proteins, such as stimulated growth factor receptors, lysosomal enzymes and lipids. Involved in late stages of cytokinesis. Plays a role in endosomal sorting/trafficking of EGF receptor.

Xenopus laevis (taxid: 8355)

>sp|Q5BKM3|CHMP3_XENTR Charged multivesicular body protein 3 OS=Xenopus tropicalis GN=chmp3 PE=2 SV=4

 Score =  156 bits (395), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 77/173 (44%), Positives = 118/173 (68%)

Query: 14  PQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQELVRSR 73
           P+ L+ +W  K+R+E R I+RQIRDIQRE++ V+++IK++AK+ +  +   LA+E+V S+
Sbjct: 12  PKDLVNEWSLKIRKEMRVIDRQIRDIQREQEKVKRSIKESAKKGNREACVILAKEVVHSK 71

Query: 74  KTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFS 133
           K VN+LY +KA MNS+ M +   +A+ R  G L KS EVMK + NL+K PE+ ATM++ S
Sbjct: 72  KAVNKLYASKAHMNSVLMSMKNQLAVLRVSGSLQKSTEVMKAMQNLVKIPEIQATMRDLS 131

Query: 134 KEMTKAGVIEEFVNDAVDTALDSEDIEEEIEEEVDKVLTAIAGETAAQLPEAV 186
           KEM KAG+IEE + D  +   D +++EE+ E E+D++L  I      + P  V
Sbjct: 132 KEMMKAGIIEEMLEDTFEGMEDQDEMEEQAEMEIDRILFEITAGALGKAPSKV 184

Probable core component of the endosomal sorting required for transport complex III (ESCRT-III) which is involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. MVBs contain intraluminal vesicles (ILVs) that are generated by invagination and scission from the limiting membrane of the endosome and mostly are delivered to lysosomes enabling degradation of membrane proteins, such as stimulated growth factor receptors, lysosomal enzymes and lipids. Involved in late stages of cytokinesis. Plays a role in endosomal sorting/trafficking of EGF receptor.

Xenopus tropicalis (taxid: 8364)

>sp|Q5RAU5|CHMP3_PONAB Charged multivesicular body protein 3 OS=Pongo abelii GN=CHMP3 PE=2 SV=3

 Score =  151 bits (381), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 82/176 (46%), Positives = 121/176 (68%), Gaps = 1/176 (0%)

Query: 11  KPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQELV 70
           KP P++L+ +W  K+R+E R ++RQIRDIQREE+ V++++KDAAK+        LA+E++
Sbjct: 10  KP-PKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCVVLAKEMI 68

Query: 71  RSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQ 130
           RSRK V++LY +KA MNS+ M +   +A+ R  G L KS EVMK + +L+K PE+ ATM+
Sbjct: 69  RSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPEIQATMR 128

Query: 131 EFSKEMTKAGVIEEFVNDAVDTALDSEDIEEEIEEEVDKVLTAIAGETAAQLPEAV 186
           E SKEM KAG+IEE + D  ++  D E++EEE E E+D++L  I      + P  V
Sbjct: 129 ELSKEMMKAGIIEEMLEDTFESMDDQEEMEEEAEMEIDRILFEITAGALGKAPSKV 184

Probable core component of the endosomal sorting required for transport complex III (ESCRT-III) which is involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. MVBs contain intraluminal vesicles (ILVs) that are generated by invagination and scission from the limiting membrane of the endosome and mostly are delivered to lysosomes enabling degradation of membrane proteins, such as stimulated growth factor receptors, lysosomal enzymes and lipids. The MVB pathway appears to require the sequential function of ESCRT-O, -I,-II and -III complexes. ESCRT-III proteins mostly dissociate from the invaginating membrane before the ILV is released. The ESCRT machinery also functions in topologically equivalent membrane fission events, such as the terminal stages of cytokinesis and the budding of enveloped viruses (lentiviruses). ESCRT-III proteins are believed to mediate the necessary vesicle extrusion and/or membrane fission activities, possibly in conjunction with the AAA ATPase VPS4. Selectively binds to phosphatidylinositol 3,5-bisphosphate PtdIns(3,5)P2 and PtdIns(3,4)P2 in preference to other phosphoinositides tested. Involved in late stages of cytokinesis. Plays a role in endosomal sorting/trafficking of EGF receptor.

Pongo abelii (taxid: 9601)

>sp|Q8CGS4|CHMP3_RAT Charged multivesicular body protein 3 OS=Rattus norvegicus GN=Chmp3 PE=1 SV=3

 Score =  151 bits (381), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 81/176 (46%), Positives = 120/176 (68%), Gaps = 1/176 (0%)

Query: 11  KPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQELV 70
           KP P++L+ +W  K+R+E R ++RQIRDIQREE+ V++++KDAAK+        LA+E++
Sbjct: 10  KP-PKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKEVCVVLAKEMI 68

Query: 71  RSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQ 130
           RSRK V++LY +KA MNS+ M +   +A+ R  G L KS EVMK + +L+K PE+ ATM+
Sbjct: 69  RSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPEIQATMR 128

Query: 131 EFSKEMTKAGVIEEFVNDAVDTALDSEDIEEEIEEEVDKVLTAIAGETAAQLPEAV 186
           E SKEM KAG+IEE + D  ++  D E++EE  E E+D++L  I      + P  V
Sbjct: 129 ELSKEMMKAGIIEEMLEDTFESMDDQEEMEEAAEMEIDRILFEITAGALGKAPSKV 184

Probable core component of the endosomal sorting required for transport complex III (ESCRT-III) which is involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. MVBs contain intraluminal vesicles (ILVs) that are generated by invagination and scission from the limiting membrane of the endosome and mostly are delivered to lysosomes enabling degradation of membrane proteins, such as stimulated growth factor receptors, lysosomal enzymes and lipids. The MVB pathway appears to require the sequential function of ESCRT-O, -I,-II and -III complexes. ESCRT-III proteins mostly dissociate from the invaginating membrane before the ILV is released. The ESCRT machinery also functions in topologically equivalent membrane fission events, such as the terminal stages of cytokinesis. ESCRT-III proteins are believed to mediate the necessary vesicle extrusion and/or membrane fission activities, possibly in conjunction with the AAA ATPase VPS4. Selectively binds to phosphatidylinositol 3,5-bisphosphate PtdIns(3,5)P2 and PtdIns(3,4)P2 in preference to other phosphoinositides tested. Involved in late stages of cytokinesis. Plays a role in endosomal sorting/trafficking of EGF receptor.

Rattus norvegicus (taxid: 10116)

>sp|Q9CQ10|CHMP3_MOUSE Charged multivesicular body protein 3 OS=Mus musculus GN=Chmp3 PE=1 SV=3

 Score =  151 bits (381), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 81/176 (46%), Positives = 120/176 (68%), Gaps = 1/176 (0%)

Query: 11  KPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQELV 70
           KP P++L+ +W  K+R+E R ++RQIRDIQREE+ V++++KDAAK+        LA+E++
Sbjct: 10  KP-PKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKEVCVVLAKEMI 68

Query: 71  RSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQ 130
           RSRK V++LY +KA MNS+ M +   +A+ R  G L KS EVMK + +L+K PE+ ATM+
Sbjct: 69  RSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPEIQATMR 128

Query: 131 EFSKEMTKAGVIEEFVNDAVDTALDSEDIEEEIEEEVDKVLTAIAGETAAQLPEAV 186
           E SKEM KAG+IEE + D  ++  D E++EE  E E+D++L  I      + P  V
Sbjct: 129 ELSKEMMKAGIIEEMLEDTFESMDDQEEMEEAAEMEIDRILFEITAGALGKAPSKV 184

Probable core component of the endosomal sorting required for transport complex III (ESCRT-III) which is involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. MVBs contain intraluminal vesicles (ILVs) that are generated by invagination and scission from the limiting membrane of the endosome and mostly are delivered to lysosomes enabling degradation of membrane proteins, such as stimulated growth factor receptors, lysosomal enzymes and lipids. The MVB pathway appears to require the sequential function of ESCRT-O, -I,-II and -III complexes. ESCRT-III proteins mostly dissociate from the invaginating membrane before the ILV is released. The ESCRT machinery also functions in topologically equivalent membrane fission events, such as the terminal stages of cytokinesis. ESCRT-III proteins are believed to mediate the necessary vesicle extrusion and/or membrane fission activities, possibly in conjunction with the AAA ATPase VPS4. Selectively binds to phosphatidylinositol 3,5-bisphosphate PtdIns(3,5)P2 and PtdIns(3,4)P2 in preference to other phosphoinositides tested. Involved in late stages of cytokinesis. Plays a role in endosomal sorting/trafficking of EGF receptor.

Mus musculus (taxid: 10090)

>sp|Q58CS7|CHMP3_BOVIN Charged multivesicular body protein 3 OS=Bos taurus GN=CHMP3 PE=2 SV=4

 Score =  151 bits (381), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 81/176 (46%), Positives = 120/176 (68%), Gaps = 1/176 (0%)

Query: 11  KPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQELV 70
           KP P++L+ +W  K+R+E R ++RQIRDIQREE+ V++++KDAAK+        LA+E++
Sbjct: 10  KP-PKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCVVLAKEMI 68

Query: 71  RSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQ 130
           RSRK V++LY +KA MNS+ M +   +A+ R  G L KS EVMK + +L+K PE+ ATM+
Sbjct: 69  RSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPEIQATMR 128

Query: 131 EFSKEMTKAGVIEEFVNDAVDTALDSEDIEEEIEEEVDKVLTAIAGETAAQLPEAV 186
           E SKEM KAG+IEE + D  ++  D E++EE  E E+D++L  I      + P  V
Sbjct: 129 ELSKEMMKAGIIEEMLEDTFESMDDQEEMEEAAEMEIDRILFEITAGALGKAPSKV 184

Probable core component of the endosomal sorting required for transport complex III (ESCRT-III) which is involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. MVBs contain intraluminal vesicles (ILVs) that are generated by invagination and scission from the limiting membrane of the endosome and mostly are delivered to lysosomes enabling degradation of membrane proteins, such as stimulated growth factor receptors, lysosomal enzymes and lipids. The MVB pathway appears to require the sequential function of ESCRT-O, -I,-II and -III complexes. ESCRT-III proteins mostly dissociate from the invaginating membrane before the ILV is released. The ESCRT machinery also functions in topologically equivalent membrane fission events, such as the terminal stages of cytokinesis and the budding of enveloped viruses (lentiviruses). ESCRT-III proteins are believed to mediate the necessary vesicle extrusion and/or membrane fission activities, possibly in conjunction with the AAA ATPase VPS4. Selectively binds to phosphatidylinositol 3,5-bisphosphate PtdIns(3,5)P2 and PtdIns(3,4)P2 in preference to other phosphoinositides tested. Involved in late stages of cytokinesis. Plays a role in endosomal sorting/trafficking of EGF receptor.

Bos taurus (taxid: 9913)

>sp|Q4R574|CHMP3_MACFA Charged multivesicular body protein 3 OS=Macaca fascicularis GN=CHMP3 PE=2 SV=3

 Score =  150 bits (380), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 81/176 (46%), Positives = 120/176 (68%), Gaps = 1/176 (0%)

Query: 11  KPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQELV 70
           KP P++L+ +W  K+R+E R ++RQIRDIQREE+ V++++KDAAK+        LA+E++
Sbjct: 10  KP-PKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCVVLAKEMI 68

Query: 71  RSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQ 130
           RSRK V++LY +KA MNS+ M +   +A+ R  G L KS EVMK + +L+K PE+ ATM+
Sbjct: 69  RSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPEIRATMR 128

Query: 131 EFSKEMTKAGVIEEFVNDAVDTALDSEDIEEEIEEEVDKVLTAIAGETAAQLPEAV 186
           E SKEM KAG+IEE + D  ++  D E++EE  E E+D++L  I      + P  V
Sbjct: 129 ELSKEMMKAGIIEEMLEDTFESMDDQEEMEEAAEMEIDRILFEITAGALGKAPSKV 184

Probable core component of the endosomal sorting required for transport complex III (ESCRT-III) which is involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. MVBs contain intraluminal vesicles (ILVs) that are generated by invagination and scission from the limiting membrane of the endosome and mostly are delivered to lysosomes enabling degradation of membrane proteins, such as stimulated growth factor receptors, lysosomal enzymes and lipids. The MVB pathway appears to require the sequential function of ESCRT-O, -I,-II and -III complexes. ESCRT-III proteins mostly dissociate from the invaginating membrane before the ILV is released. The ESCRT machinery also functions in topologically equivalent membrane fission events, such as the terminal stages of cytokinesis and the budding of enveloped viruses (lentiviruses). ESCRT-III proteins are believed to mediate the necessary vesicle extrusion and/or membrane fission activities, possibly in conjunction with the AAA ATPase VPS4. Selectively binds to phosphatidylinositol 3,5-bisphosphate PtdIns(3,5)P2 and PtdIns(3,4)P2 in preference to other phosphoinositides tested. Involved in late stages of cytokinesis. Plays a role in endosomal sorting/trafficking of EGF receptor.

Macaca fascicularis (taxid: 9541)

>sp|Q9Y3E7|CHMP3_HUMAN Charged multivesicular body protein 3 OS=Homo sapiens GN=CHMP3 PE=1 SV=3

 Score =  150 bits (380), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 82/176 (46%), Positives = 121/176 (68%), Gaps = 1/176 (0%)

Query: 11  KPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQELV 70
           KP P++L+ +W  K+R+E R ++RQIRDIQREE+ V++++KDAAK+        LA+E++
Sbjct: 10  KP-PKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKEMI 68

Query: 71  RSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQ 130
           RSRK V++LY +KA MNS+ M +   +A+ R  G L KS EVMK + +L+K PE+ ATM+
Sbjct: 69  RSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPEIQATMR 128

Query: 131 EFSKEMTKAGVIEEFVNDAVDTALDSEDIEEEIEEEVDKVLTAIAGETAAQLPEAV 186
           E SKEM KAG+IEE + D  ++  D E++EEE E E+D++L  I      + P  V
Sbjct: 129 ELSKEMMKAGIIEEMLEDTFESMDDQEEMEEEAEMEIDRILFEITAGALGKAPSKV 184

Probable core component of the endosomal sorting required for transport complex III (ESCRT-III) which is involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. MVBs contain intraluminal vesicles (ILVs) that are generated by invagination and scission from the limiting membrane of the endosome and mostly are delivered to lysosomes enabling degradation of membrane proteins, such as stimulated growth factor receptors, lysosomal enzymes and lipids. The MVB pathway appears to require the sequential function of ESCRT-O, -I,-II and -III complexes. ESCRT-III proteins mostly dissociate from the invaginating membrane before the ILV is released. The ESCRT machinery also functions in topologically equivalent membrane fission events, such as the terminal stages of cytokinesis and the budding of enveloped viruses (HIV-1 and other lentiviruses). ESCRT-III proteins are believed to mediate the necessary vesicle extrusion and/or membrane fission activities, possibly in conjunction with the AAA ATPase VPS4. Selectively binds to phosphatidylinositol 3,5-bisphosphate PtdIns(3,5)P2 and PtdIns(3,4)P2 in preference to other phosphoinositides tested. Involved in late stages of cytokinesis. Plays a role in endosomal sorting/trafficking of EGF receptor. Isoform 2 prevents stress-mediated cell death and accumulation of reactive oxygen species when expressed in yeast cells.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	229
356516916	227	PREDICTED: vacuolar protein sorting-asso	0.991	1.0	0.882	1e-105
358248916	227	uncharacterized protein LOC100797244 [Gl	0.991	1.0	0.873	1e-104
297734917	259	unnamed protein product [Vitis vinifera]	0.995	0.880	0.882	1e-104
225436486	228	PREDICTED: vacuolar protein sorting-asso	0.995	1.0	0.882	1e-103
449510503	228	PREDICTED: vacuolar protein sorting-asso	0.995	1.0	0.860	1e-102
297808285	229	SNF7 family protein [Arabidopsis lyrata	1.0	1.0	0.838	1e-100
359806596	228	uncharacterized protein LOC100780989 [Gl	0.995	1.0	0.877	1e-100
15237175	229	vacuolar protein sorting-associated prot	1.0	1.0	0.842	2e-99
24417394	225	unknown [Arabidopsis thaliana]	0.982	1.0	0.844	1e-97
356539374	227	PREDICTED: LOW QUALITY PROTEIN: vacuolar	0.991	1.0	0.847	2e-97

>gi|356516916|ref|XP_003527138.1| PREDICTED: vacuolar protein sorting-associated protein 24 homolog 1-like [Glycine max]

 Score =  386 bits (992), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 202/229 (88%), Positives = 220/229 (96%), Gaps = 2/229 (0%)

Query: 1   MEKVMNMIKPKPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLS 60
           MEKVMN++KPKPNPQQLLRDWQR+LRQECRNIERQIRDIQREEKNVQKAI++AAKRND+ 
Sbjct: 1   MEKVMNILKPKPNPQQLLRDWQRRLRQECRNIERQIRDIQREEKNVQKAIREAAKRNDMG 60

Query: 61  SAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLM 120
           SAK+LA+ELVRSR+TVNRLYENKAQMNSISMHLGESVAIARTVGHL+KSAEVMKLVNNLM
Sbjct: 61  SAKALAKELVRSRQTVNRLYENKAQMNSISMHLGESVAIARTVGHLSKSAEVMKLVNNLM 120

Query: 121 KAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSEDIEEEIEEEVDKVLTAIAGETAA 180
           KAPE+A TMQEFSKEMTKAGVIEE VNDAVD+ALDSEDIE+EIEEEVDKVLTAIAGETAA
Sbjct: 121 KAPEMAVTMQEFSKEMTKAGVIEEIVNDAVDSALDSEDIEDEIEEEVDKVLTAIAGETAA 180

Query: 181 QLPEAVRKERVKQSAQTSRAAQEEDAVAEGIDDEKELEEIRARLAKVRS 229
           QLPEAVRKERVK  AQ+  A  EEDA+AEG+DDE+E+EEIRARLAKVRS
Sbjct: 181 QLPEAVRKERVKLPAQSVGA--EEDAIAEGVDDEEEMEEIRARLAKVRS 227

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358248916|ref|NP_001239962.1| uncharacterized protein LOC100797244 [Glycine max] gi|255641642|gb|ACU21093.1| unknown [Glycine max]

 Score =  383 bits (984), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 200/229 (87%), Positives = 218/229 (95%), Gaps = 2/229 (0%)

Query: 1   MEKVMNMIKPKPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLS 60
           MEKVMN++KPKPNPQQLLRDWQR+LRQECRNIERQIRDIQREEKNVQKAI++AAKRND+ 
Sbjct: 1   MEKVMNILKPKPNPQQLLRDWQRRLRQECRNIERQIRDIQREEKNVQKAIREAAKRNDMG 60

Query: 61  SAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLM 120
           SAK+LA+ELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHL+KSAEVMKLVNNLM
Sbjct: 61  SAKALAKELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLSKSAEVMKLVNNLM 120

Query: 121 KAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSEDIEEEIEEEVDKVLTAIAGETAA 180
           KAPE+A TMQEFSKEMTKAGVIEE VNDA+DTALDSEDIE+EIEEEVDKVLTAIAGETAA
Sbjct: 121 KAPEMAVTMQEFSKEMTKAGVIEEIVNDAIDTALDSEDIEDEIEEEVDKVLTAIAGETAA 180

Query: 181 QLPEAVRKERVKQSAQTSRAAQEEDAVAEGIDDEKELEEIRARLAKVRS 229
           QLPEAVRKERVK   Q+  A  EE+ +AEG+DDE+E+EEIRARLAKVRS
Sbjct: 181 QLPEAVRKERVKLPGQSVGA--EEEVIAEGVDDEEEMEEIRARLAKVRS 227

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297734917|emb|CBI17151.3| unnamed protein product [Vitis vinifera]

 Score =  382 bits (980), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 202/229 (88%), Positives = 218/229 (95%), Gaps = 1/229 (0%)

Query: 1   MEKVMNMIKPKPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLS 60
           MEKVMN++KPKPNPQQ LRDWQRKLRQECRNIERQIRDIQREEK VQKAI++AAKRND+ 
Sbjct: 32  MEKVMNILKPKPNPQQQLRDWQRKLRQECRNIERQIRDIQREEKGVQKAIREAAKRNDMV 91

Query: 61  SAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLM 120
           SAK+LA E+VRSR+TVNRL+ENKAQ+NSISMHLGESVAIARTVGHL+KSAEVMKLVNNLM
Sbjct: 92  SAKTLAMEIVRSRRTVNRLHENKAQLNSISMHLGESVAIARTVGHLSKSAEVMKLVNNLM 151

Query: 121 KAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSEDIEEEIEEEVDKVLTAIAGETAA 180
           KAPEVA TMQEFSKEMTKAGVIEE VNDAVDTALDSEDIEEEIEEEVDKVLTAIAGETAA
Sbjct: 152 KAPEVAVTMQEFSKEMTKAGVIEEIVNDAVDTALDSEDIEEEIEEEVDKVLTAIAGETAA 211

Query: 181 QLPEAVRKERVKQSAQTSRAAQEEDAVAEGIDDEKELEEIRARLAKVRS 229
           QLPEAVRKERVKQ AQT+  A +E+A+AEG DDE+ELEEIRARLAKVRS
Sbjct: 212 QLPEAVRKERVKQPAQTAE-ADDEEAIAEGADDEEELEEIRARLAKVRS 259

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225436486|ref|XP_002275903.1| PREDICTED: vacuolar protein sorting-associated protein 24 homolog 1-like [Vitis vinifera]

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 202/229 (88%), Positives = 218/229 (95%), Gaps = 1/229 (0%)

Query: 1   MEKVMNMIKPKPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLS 60
           MEKVMN++KPKPNPQQ LRDWQRKLRQECRNIERQIRDIQREEK VQKAI++AAKRND+ 
Sbjct: 1   MEKVMNILKPKPNPQQQLRDWQRKLRQECRNIERQIRDIQREEKGVQKAIREAAKRNDMV 60

Query: 61  SAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLM 120
           SAK+LA E+VRSR+TVNRL+ENKAQ+NSISMHLGESVAIARTVGHL+KSAEVMKLVNNLM
Sbjct: 61  SAKTLAMEIVRSRRTVNRLHENKAQLNSISMHLGESVAIARTVGHLSKSAEVMKLVNNLM 120

Query: 121 KAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSEDIEEEIEEEVDKVLTAIAGETAA 180
           KAPEVA TMQEFSKEMTKAGVIEE VNDAVDTALDSEDIEEEIEEEVDKVLTAIAGETAA
Sbjct: 121 KAPEVAVTMQEFSKEMTKAGVIEEIVNDAVDTALDSEDIEEEIEEEVDKVLTAIAGETAA 180

Query: 181 QLPEAVRKERVKQSAQTSRAAQEEDAVAEGIDDEKELEEIRARLAKVRS 229
           QLPEAVRKERVKQ AQT+  A +E+A+AEG DDE+ELEEIRARLAKVRS
Sbjct: 181 QLPEAVRKERVKQPAQTAE-ADDEEAIAEGADDEEELEEIRARLAKVRS 228

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449510503|ref|XP_004163684.1| PREDICTED: vacuolar protein sorting-associated protein 24 homolog 1-like [Cucumis sativus]

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 197/229 (86%), Positives = 220/229 (96%), Gaps = 1/229 (0%)

Query: 1   MEKVMNMIKPKPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLS 60
           MEKVMN++KPKPNPQQ LRDWQR+LRQECRN+ERQIRDIQREEKNVQKAI+DAAKRND+ 
Sbjct: 1   MEKVMNILKPKPNPQQQLRDWQRRLRQECRNVERQIRDIQREEKNVQKAIRDAAKRNDMV 60

Query: 61  SAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLM 120
           SAK+LA+E+VRS+KTVNRL+ENKAQ+NSISMHLGESVAIARTVGHL+KSAEVMKLVNNLM
Sbjct: 61  SAKALAKEIVRSKKTVNRLHENKAQLNSISMHLGESVAIARTVGHLSKSAEVMKLVNNLM 120

Query: 121 KAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSEDIEEEIEEEVDKVLTAIAGETAA 180
           KAPE+A TMQEFSKEMTKAGVIEEFVNDAVD+ALDSEDIEEEIEEEVDKVLTAIAGETAA
Sbjct: 121 KAPEMAKTMQEFSKEMTKAGVIEEFVNDAVDSALDSEDIEEEIEEEVDKVLTAIAGETAA 180

Query: 181 QLPEAVRKERVKQSAQTSRAAQEEDAVAEGIDDEKELEEIRARLAKVRS 229
           QLPEAVRKE++KQ A   +  +EE+A+AEG+DDE+ELEEIRARLAKVRS
Sbjct: 181 QLPEAVRKEKMKQPAHV-QEVREEEAIAEGVDDEEELEEIRARLAKVRS 228

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297808285|ref|XP_002872026.1| SNF7 family protein [Arabidopsis lyrata subsp. lyrata] gi|297317863|gb|EFH48285.1| SNF7 family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  369 bits (948), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 192/229 (83%), Positives = 221/229 (96%)

Query: 1   MEKVMNMIKPKPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLS 60
           ME+VMN+IKPKP+P+QLLRDWQRKLRQECRNIERQIRDIQ+EE+NVQKAIK+AAKRND+ 
Sbjct: 1   MERVMNIIKPKPDPKQLLRDWQRKLRQECRNIERQIRDIQKEERNVQKAIKEAAKRNDMV 60

Query: 61  SAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLM 120
           SAK+LA+E+V SR+TVNRLYENKAQMNSISMHLGESVAIARTVGHL+KSAEVMKLVNNLM
Sbjct: 61  SAKALAKEIVSSRRTVNRLYENKAQMNSISMHLGESVAIARTVGHLSKSAEVMKLVNNLM 120

Query: 121 KAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSEDIEEEIEEEVDKVLTAIAGETAA 180
           KAP++AATMQEFSKEMTKAGVIEEFVN+A+D ALDSED+E+EI+EEVDKVLTAIAGETAA
Sbjct: 121 KAPQMAATMQEFSKEMTKAGVIEEFVNEAIDNALDSEDMEDEIDEEVDKVLTAIAGETAA 180

Query: 181 QLPEAVRKERVKQSAQTSRAAQEEDAVAEGIDDEKELEEIRARLAKVRS 229
           +LPEAVRKER+K  AQ +  ++EE+A+AEG+DDE+ELEEIRARLAKVRS
Sbjct: 181 ELPEAVRKERIKVPAQKASTSREEEAIAEGVDDEEELEEIRARLAKVRS 229

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359806596|ref|NP_001241270.1| uncharacterized protein LOC100780989 [Glycine max] gi|255638843|gb|ACU19725.1| unknown [Glycine max]

 Score =  368 bits (945), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 201/229 (87%), Positives = 218/229 (95%), Gaps = 1/229 (0%)

Query: 1   MEKVMNMIKPKPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLS 60
           MEKV N++KPKPNPQQLLRDWQR+LRQ CRNIERQIRDIQREEKNVQKAI++AAKRND+ 
Sbjct: 1   MEKVKNILKPKPNPQQLLRDWQRRLRQGCRNIERQIRDIQREEKNVQKAIREAAKRNDMG 60

Query: 61  SAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLM 120
           SAK+LA+ELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHL+KSAEVMKLVNNL+
Sbjct: 61  SAKALAKELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLSKSAEVMKLVNNLI 120

Query: 121 KAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSEDIEEEIEEEVDKVLTAIAGETAA 180
           KAPE+A TMQEFSKEMTKAGVIEE VNDAVDTALDSEDIE+EIEEEVDKVLTAIAGETAA
Sbjct: 121 KAPEMAVTMQEFSKEMTKAGVIEEIVNDAVDTALDSEDIEDEIEEEVDKVLTAIAGETAA 180

Query: 181 QLPEAVRKERVKQSAQTSRAAQEEDAVAEGIDDEKELEEIRARLAKVRS 229
           QLPEA RKERVKQ AQ S  A EE+A+AEG+DDE+E+EEIRARLAKVRS
Sbjct: 181 QLPEAARKERVKQPAQ-SVGAAEEEAIAEGVDDEEEMEEIRARLAKVRS 228

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15237175|ref|NP_197686.1| vacuolar protein sorting-associated protein 24-1 [Arabidopsis thaliana] gi|75170194|sp|Q9FFB3.1|VP241_ARATH RecName: Full=Vacuolar protein sorting-associated protein 24 homolog 1; Short=AtVPS24-1; AltName: Full=Charged multivesicular body protein 3 homolog 1; AltName: Full=ESCRT-III complex subunit VPS24 homolog 1 gi|10177242|dbj|BAB10616.1| unnamed protein product [Arabidopsis thaliana] gi|15451068|gb|AAK96805.1| Unknown protein [Arabidopsis thaliana] gi|22136128|gb|AAM91142.1| unknown protein [Arabidopsis thaliana] gi|332005717|gb|AED93100.1| vacuolar protein sorting-associated protein 24-1 [Arabidopsis thaliana]

 Score =  367 bits (942), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 193/229 (84%), Positives = 220/229 (96%)

Query: 1   MEKVMNMIKPKPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLS 60
           ME+VMN+IKPKP+P+QLLRDWQRKLRQECRNIERQIRDIQ+EE+NVQKAIK+AAKRND+ 
Sbjct: 1   MERVMNIIKPKPDPKQLLRDWQRKLRQECRNIERQIRDIQKEERNVQKAIKEAAKRNDMV 60

Query: 61  SAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLM 120
           SAK+LA+E+V SR+TVNRLYENKAQMNSISMHLGESVAIARTVGHL+KSAEVMKLVNNLM
Sbjct: 61  SAKALAKEIVSSRRTVNRLYENKAQMNSISMHLGESVAIARTVGHLSKSAEVMKLVNNLM 120

Query: 121 KAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSEDIEEEIEEEVDKVLTAIAGETAA 180
           KAP++AATMQEFSKEMTKAGVIEEFVN+A+D ALDSED+EEEI+EEVDKVLTAIAGETAA
Sbjct: 121 KAPQMAATMQEFSKEMTKAGVIEEFVNEAIDNALDSEDMEEEIDEEVDKVLTAIAGETAA 180

Query: 181 QLPEAVRKERVKQSAQTSRAAQEEDAVAEGIDDEKELEEIRARLAKVRS 229
           +LP AVRKER+K  AQ +  ++EE+AVAEG+DDE+ELEEIRARLAKVRS
Sbjct: 181 ELPVAVRKERIKVPAQKASTSREEEAVAEGVDDEEELEEIRARLAKVRS 229

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|24417394|gb|AAN60307.1| unknown [Arabidopsis thaliana]

 Score =  361 bits (927), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 190/225 (84%), Positives = 216/225 (96%)

Query: 5   MNMIKPKPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKS 64
           MN+IKPKP+P+QLLRDWQRKLRQECRNIERQIRDIQ+EE+NVQKAIK+AAKRND+ SAK+
Sbjct: 1   MNIIKPKPDPKQLLRDWQRKLRQECRNIERQIRDIQKEERNVQKAIKEAAKRNDMVSAKA 60

Query: 65  LAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPE 124
           LA+E+V SR+TVNRLYENKAQMNSISMHLGESVAIARTVGHL+KSAEVMKLVNNLMKAP+
Sbjct: 61  LAKEIVSSRRTVNRLYENKAQMNSISMHLGESVAIARTVGHLSKSAEVMKLVNNLMKAPQ 120

Query: 125 VAATMQEFSKEMTKAGVIEEFVNDAVDTALDSEDIEEEIEEEVDKVLTAIAGETAAQLPE 184
           +AATMQEFSKEMTKAGVIEEFVN+A+D ALDSED+EEEI+EEVDKVLTAIAGETAA+LP 
Sbjct: 121 MAATMQEFSKEMTKAGVIEEFVNEAIDNALDSEDMEEEIDEEVDKVLTAIAGETAAELPV 180

Query: 185 AVRKERVKQSAQTSRAAQEEDAVAEGIDDEKELEEIRARLAKVRS 229
           AVRKER+K  AQ +  ++EE+AVAEG+DDE+ELEEIRARLAKVRS
Sbjct: 181 AVRKERIKVPAQKASTSREEEAVAEGVDDEEELEEIRARLAKVRS 225

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356539374|ref|XP_003538173.1| PREDICTED: LOW QUALITY PROTEIN: vacuolar protein sorting-associated protein 24 homolog 1-like [Glycine max]

 Score =  360 bits (925), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 194/229 (84%), Positives = 211/229 (92%), Gaps = 2/229 (0%)

Query: 1   MEKVMNMIKPKPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLS 60
           MEKVMN++KPKPNPQQLLRDWQR+LRQ+CRNIERQIRDIQREEKNVQKAI++AAKRND+ 
Sbjct: 1   MEKVMNILKPKPNPQQLLRDWQRRLRQQCRNIERQIRDIQREEKNVQKAIREAAKRNDMG 60

Query: 61  SAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLM 120
           SAK+L +ELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHL+KSAEVMKLVNNL 
Sbjct: 61  SAKALTKELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLSKSAEVMKLVNNLT 120

Query: 121 KAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSEDIEEEIEEEVDKVLTAIAGETAA 180
           KAPE+A  MQEFSKEMTKAGVIEE VNDAVDTALDSED  E+  EEVDKVLT IAGETA 
Sbjct: 121 KAPEMAVAMQEFSKEMTKAGVIEEIVNDAVDTALDSED-IEDEIEEVDKVLTTIAGETAT 179

Query: 181 QLPEAVRKERVKQSAQTSRAAQEEDAVAEGIDDEKELEEIRARLAKVRS 229
            LPEAVRKERVKQ AQ S  A EE+A+AEG+DDE+E+EEIRARLAKVRS
Sbjct: 180 LLPEAVRKERVKQPAQ-SVGAAEEEAIAEGVDDEEEMEEIRARLAKVRS 227

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	229
TAIR|locus:2172686	229	VPS24.1 [Arabidopsis thaliana	1.0	1.0	0.807	4.3e-93
TAIR|locus:2075924	200	VPS24.2 [Arabidopsis thaliana	0.864	0.99	0.676	1.2e-63
MGI|MGI:1913950	224	Chmp3 "charged multivesicular	0.938	0.959	0.410	2e-40
RGD|708556	223	Chmp3 "charged multivesicular	0.934	0.959	0.410	3.3e-40
UNIPROTKB|E1C230	218	VPS24 "Uncharacterized protein	0.921	0.967	0.409	8.7e-40
UNIPROTKB|E2RDX0	292	CHMP3 "Uncharacterized protein	0.925	0.726	0.401	2.3e-39
UNIPROTKB|I3LFQ9	221	CHMP3 "Uncharacterized protein	0.925	0.959	0.401	2.9e-39
ZFIN|ZDB-GENE-040426-2600	221	chmp3 "charged multivesicular	0.925	0.959	0.406	2.9e-39
UNIPROTKB|Q58CS7	222	CHMP3 "Charged multivesicular	0.930	0.959	0.397	6.1e-39
UNIPROTKB|Q9Y3E7	222	CHMP3 "Charged multivesicular	0.930	0.959	0.397	7.8e-39

TAIR|locus:2172686 VPS24.1 [Arabidopsis thaliana (taxid:3702)]

 Score = 927 (331.4 bits), Expect = 4.3e-93, P = 4.3e-93
 Identities = 185/229 (80%), Positives = 210/229 (91%)

Query:     1 MEKVMNMIKPKPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLS 60
             ME+VMN+IKPKP+P+QLLRDWQRKLRQECRNIERQIRDIQ+EE+NVQKAIK+AAKRND+ 
Sbjct:     1 MERVMNIIKPKPDPKQLLRDWQRKLRQECRNIERQIRDIQKEERNVQKAIKEAAKRNDMV 60

Query:    61 SAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLM 120
             SAK+LA+E+V SR+TVNRLYENKAQMNSISMHLGESVAIARTVGHL+KSAEVMKLVNNLM
Sbjct:    61 SAKALAKEIVSSRRTVNRLYENKAQMNSISMHLGESVAIARTVGHLSKSAEVMKLVNNLM 120

Query:   121 KAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKVLTAIAGETAA 180
             KAP++AATMQEFSKEMTKAGVIEEFVN+A+D ALDS          VDKVLTAIAGETAA
Sbjct:   121 KAPQMAATMQEFSKEMTKAGVIEEFVNEAIDNALDSEDMEEEIDEEVDKVLTAIAGETAA 180

Query:   181 QLPEAVRKERVKQSAQTSRAAQEEDAVAEGIDDEKELEEIRARLAKVRS 229
             +LP AVRKER+K  AQ +  ++EE+AVAEG+DDE+ELEEIRARLAKVRS
Sbjct:   181 ELPVAVRKERIKVPAQKASTSREEEAVAEGVDDEEELEEIRARLAKVRS 229

GO:0005634 "nucleus" evidence=ISM

GO:0015031 "protein transport" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=ISS

GO:0000815 "ESCRT III complex" evidence=ISS

GO:0006623 "protein targeting to vacuole" evidence=RCA

TAIR|locus:2075924 VPS24.2 [Arabidopsis thaliana (taxid:3702)]

 Score = 649 (233.5 bits), Expect = 1.2e-63, P = 1.2e-63
 Identities = 134/198 (67%), Positives = 159/198 (80%)

Query:    32 IERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQELVRSRKTVNRLYENKAQMNSISM 91
             I+  + DI+REE+NV KAIKD+ KRNDL +AK+LA+E+V SR+TV RLYENKAQ+NSISM
Sbjct:     3 IKSLLSDIEREERNVHKAIKDSVKRNDLVTAKALAREIVSSRRTVKRLYENKAQVNSISM 62

Query:    92 HLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVD 151
             HLGES+A A TVG+L+KS EVMKLVN+LMKAPE+A TMQ FSKEMTK GVIEEFV+DAVD
Sbjct:    63 HLGESIATAVTVGNLSKSGEVMKLVNSLMKAPEIAVTMQAFSKEMTKTGVIEEFVSDAVD 122

Query:   152 TALDSXXXXXXXXXXVDKVLTAIAGETAAQLPEAVRKERVKQSAQTSRAAQEEDAVAEGI 211
              ALDS          VDKVLTAIAGETAA+LPEAVRK+++   AQ +     EDA+ EG+
Sbjct:   123 NALDSEDIEEEIEEEVDKVLTAIAGETAAELPEAVRKQKMNVPAQKAETLHGEDAIVEGV 182

Query:   212 DDEKELEEIRARLAKVRS 229
             D E+ELE IR RLA VRS
Sbjct:   183 DAEEELEAIRYRLANVRS 200

GO:0005634 "nucleus" evidence=ISM

GO:0005737 "cytoplasm" evidence=ISM

GO:0015031 "protein transport" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=ISS

GO:0000815 "ESCRT III complex" evidence=ISS

MGI|MGI:1913950 Chmp3 "charged multivesicular body protein 3" [Mus musculus (taxid:10090)]

 Score = 430 (156.4 bits), Expect = 2.0e-40, P = 2.0e-40
 Identities = 90/219 (41%), Positives = 136/219 (62%)

Query:    11 KPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQELV 70
             KP P++L+ +W  K+R+E R ++RQIRDIQREE+ V++++KDAAK+        LA+E++
Sbjct:    10 KP-PKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKEVCVVLAKEMI 68

Query:    71 RSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQ 130
             RSRK V++LY +KA MNS+ M +   +A+ R  G L KS EVMK + +L+K PE+ ATM+
Sbjct:    69 RSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPEIQATMR 128

Query:   131 EFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKVLTAIAGETAAQLPEAVRKER 190
             E SKEM KAG+IEE + D  ++  D           +D++L  I      + P  V    
Sbjct:   129 ELSKEMMKAGIIEEMLEDTFESMDDQEEMEEAAEMEIDRILFEITAGALGKAPSKVTDAL 188

Query:   191 VKQSAQTSRAAQEEDAVAEGIDDEKELEEIRARLAKVRS 229
              +     + AA EE    E  +DE++LE +++RLA +RS
Sbjct:   189 PEPEPAGAMAASEE---GEEEEDEEDLEAMQSRLATLRS 224

GO:0000910 "cytokinesis" evidence=ISO

GO:0005546 "phosphatidylinositol-4,5-bisphosphate binding" evidence=ISO

GO:0005737 "cytoplasm" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0005769 "early endosome" evidence=ISO

GO:0005770 "late endosome" evidence=ISO

GO:0006810 "transport" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0008333 "endosome to lysosome transport" evidence=ISO

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0030496 "midbody" evidence=ISO

GO:0051036 "regulation of endosome size" evidence=ISO

GO:0051301 "cell division" evidence=IEA

RGD|708556 Chmp3 "charged multivesicular body protein 3" [Rattus norvegicus (taxid:10116)]

 Score = 428 (155.7 bits), Expect = 3.3e-40, P = 3.3e-40
 Identities = 90/219 (41%), Positives = 135/219 (61%)

Query:    11 KPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQELV 70
             KP P++L+ +W  K+R+E R ++RQIRDIQREE+ V++++KDAAK+        LA+E++
Sbjct:    10 KP-PKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKEVCVVLAKEMI 68

Query:    71 RSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQ 130
             RSRK V++LY +KA MNS+ M +   +A+ R  G L KS EVMK + +L+K PE+ ATM+
Sbjct:    69 RSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPEIQATMR 128

Query:   131 EFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKVLTAIAGETAAQLPEAVRKER 190
             E SKEM KAG+IEE + D  ++  D           +D++L  I      + P  V    
Sbjct:   129 ELSKEMMKAGIIEEMLEDTFESMDDQEEMEEAAEMEIDRILFEITAGALGKAPSKVTDAL 188

Query:   191 VKQSAQTSRAAQEEDAVAEGIDDEKELEEIRARLAKVRS 229
              +     + AA E D      DDE++LE +++RLA +RS
Sbjct:   189 PEPEPAGAMAASEGDEE----DDEEDLEAMQSRLATLRS 223

GO:0000815 "ESCRT III complex" evidence=IC

GO:0000910 "cytokinesis" evidence=IMP

GO:0005546 "phosphatidylinositol-4,5-bisphosphate binding" evidence=IMP

GO:0005769 "early endosome" evidence=IDA

GO:0005770 "late endosome" evidence=IDA

GO:0005829 "cytosol" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0008333 "endosome to lysosome transport" evidence=IMP

GO:0015031 "protein transport" evidence=IEA

GO:0030496 "midbody" evidence=IDA

GO:0031902 "late endosome membrane" evidence=IEA

GO:0051036 "regulation of endosome size" evidence=IMP

UNIPROTKB|E1C230 VPS24 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 424 (154.3 bits), Expect = 8.7e-40, P = 8.7e-40
 Identities = 90/220 (40%), Positives = 135/220 (61%)

Query:    10 PKPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQEL 69
             P+  P++L+ +W  K+R+E R I+RQIRDIQREE+ V+++IKDAAK+        LA+EL
Sbjct:     8 PEKPPKELVNEWSLKIRKEMRVIDRQIRDIQREEEKVKRSIKDAAKKGQKDVCVILAKEL 67

Query:    70 VRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATM 129
             +RSRK V++LY +KA MNS+ M +   +A+ R  G L KS EVMK + +L+K PE+ ATM
Sbjct:    68 IRSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPEIQATM 127

Query:   130 QEFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKVLTAIAGETAAQLPEAVRKE 189
             +E SKEM KAG+IEE + D  ++  D           +DK+L  I      + P  V   
Sbjct:   128 RELSKEMMKAGIIEEMLEDTFESMEDEEEMEEEAEMEIDKILFEITAGALGKAPSKVTDA 187

Query:   190 RVKQSAQTSRAAQEEDAVAEGIDDEKELEEIRARLAKVRS 229
               +  A  + AA         +D+E+++E +++RLA +RS
Sbjct:   188 LPEPEAMGAAAA---------VDEEEDIEAMQSRLATLRS 218

GO:0015031 "protein transport" evidence=IEA

UNIPROTKB|E2RDX0 CHMP3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 420 (152.9 bits), Expect = 2.3e-39, P = 2.3e-39
 Identities = 88/219 (40%), Positives = 135/219 (61%)

Query:    11 KPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQELV 70
             KP P++L+ +W  K+R+E R ++RQIRDIQREE+ V++++KDAAK+        LA+E++
Sbjct:    81 KP-PKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCVVLAKEMI 139

Query:    71 RSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQ 130
             RSRK V++LY +KA MNS+ M +   +A+ R  G L KS EVMK + +L+K PE+ ATM+
Sbjct:   140 RSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPEIQATMR 199

Query:   131 EFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKVLTAIAGETAAQLPEAVRKER 190
             E SKEM KAG+IEE + D  ++  D           +DK+L  I      + P  V    
Sbjct:   200 ELSKEMMKAGIIEEMLEDTFESMDDQEEMEEAAEMEIDKILFEITAGALGKAPSKVTDAL 259

Query:   191 VKQSAQTSRAAQEEDAVAEGIDDEKELEEIRARLAKVRS 229
              +     + AA E++      ++E+ LE +++RLA +RS
Sbjct:   260 PEPEPSGAMAASEDE------EEEEALEAMQSRLATLRS 292

GO:0015031 "protein transport" evidence=IEA

UNIPROTKB|I3LFQ9 CHMP3 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 419 (152.6 bits), Expect = 2.9e-39, P = 2.9e-39
 Identities = 88/219 (40%), Positives = 135/219 (61%)

Query:    11 KPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQELV 70
             KP P++L+ +W  K+R+E R ++RQIRDIQREE+ V++++KDAAK+        LA+E++
Sbjct:    10 KP-PKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCVVLAKEMI 68

Query:    71 RSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQ 130
             RSRK V++LY +KA MNS+ M +   +A+ R  G L KS EVMK + +L+K PE+ ATM+
Sbjct:    69 RSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPEIQATMR 128

Query:   131 EFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKVLTAIAGETAAQLPEAVRKER 190
             E SKEM KAG+IEE + D  ++  D           +DK+L  I      + P  V    
Sbjct:   129 ELSKEMMKAGIIEEMLEDTFESMDDQEEMEEAAEMEIDKILFEITAGALGKAPSKVTDAL 188

Query:   191 VKQSAQTSRAAQEEDAVAEGIDDEKELEEIRARLAKVRS 229
              +     + AA E++      ++E+ LE +++RLA +RS
Sbjct:   189 PEPEPPGAMAASEDE------EEEEALEAMQSRLATLRS 221

GO:0015031 "protein transport" evidence=IEA

ZFIN|ZDB-GENE-040426-2600 chmp3 "charged multivesicular body protein 3" [Danio rerio (taxid:7955)]

 Score = 419 (152.6 bits), Expect = 2.9e-39, P = 2.9e-39
 Identities = 89/219 (40%), Positives = 139/219 (63%)

Query:    11 KPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQELV 70
             KP P+ L+ +W  K+R+E R I+RQIRDIQREE+ V+++IKDAAK+        LA+E++
Sbjct:    10 KP-PKDLINEWSLKIRKEMRVIDRQIRDIQREEEKVKRSIKDAAKKGQKDVCIILAKEMI 68

Query:    71 RSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQ 130
             +S++ +N+LY +KAQMNS+ + +   +++ R  G L KS EVMK + +L+K PE+ ATM+
Sbjct:    69 QSKRAINKLYASKAQMNSVLLSMKNQLSVLRVAGALQKSTEVMKAMQSLVKIPEIQATMR 128

Query:   131 EFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKVLTAIAGETAAQLPEAVRKER 190
             + SKEM KAG+IEE + D ++   D           VDK+L  I      + P  V  + 
Sbjct:   129 DLSKEMMKAGIIEEMLEDTLEGMDDEEEMEEAAEAEVDKILFEITAGALGKAPSKVT-DL 187

Query:   191 VKQSAQTSRAAQEEDAVAEGIDDEKELEEIRARLAKVRS 229
                 A  + AA EE++     ++E+E+EE+++RLA +RS
Sbjct:   188 PDPVAIGATAAPEEES-----EEEEEIEEMQSRLAALRS 221

GO:0015031 "protein transport" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0031902 "late endosome membrane" evidence=IEA

UNIPROTKB|Q58CS7 CHMP3 "Charged multivesicular body protein 3" [Bos taurus (taxid:9913)]

 Score = 416 (151.5 bits), Expect = 6.1e-39, P = 6.1e-39
 Identities = 87/219 (39%), Positives = 135/219 (61%)

Query:    11 KPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQELV 70
             KP P++L+ +W  K+R+E R ++RQIRDIQREE+ V++++KDAAK+        LA+E++
Sbjct:    10 KP-PKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCVVLAKEMI 68

Query:    71 RSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQ 130
             RSRK V++LY +KA MNS+ M +   +A+ R  G L KS EVMK + +L+K PE+ ATM+
Sbjct:    69 RSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPEIQATMR 128

Query:   131 EFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKVLTAIAGETAAQLPEAVRKER 190
             E SKEM KAG+IEE + D  ++  D           +D++L  I      + P  V    
Sbjct:   129 ELSKEMMKAGIIEEMLEDTFESMDDQEEMEEAAEMEIDRILFEITAGALGKAPSKVTDAL 188

Query:   191 VKQSAQTSRAAQEEDAVAEGIDDEKELEEIRARLAKVRS 229
              +     + AA E++      ++E+ LE +++RLA +RS
Sbjct:   189 PEPEPLGAMAASEDEE-----EEEEALEAMQSRLATLRS 222

GO:0031902 "late endosome membrane" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

UNIPROTKB|Q9Y3E7 CHMP3 "Charged multivesicular body protein 3" [Homo sapiens (taxid:9606)]

 Score = 415 (151.1 bits), Expect = 7.8e-39, P = 7.8e-39
 Identities = 87/219 (39%), Positives = 135/219 (61%)

Query:    11 KPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQELV 70
             KP P++L+ +W  K+R+E R ++RQIRDIQREE+ V++++KDAAK+        LA+E++
Sbjct:    10 KP-PKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKEMI 68

Query:    71 RSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQ 130
             RSRK V++LY +KA MNS+ M +   +A+ R  G L KS EVMK + +L+K PE+ ATM+
Sbjct:    69 RSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPEIQATMR 128

Query:   131 EFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKVLTAIAGETAAQLPEAVRKER 190
             E SKEM KAG+IEE + D  ++  D           +D++L  I      + P  V    
Sbjct:   129 ELSKEMMKAGIIEEMLEDTFESMDDQEEMEEEAEMEIDRILFEITAGALGKAPSKVTDAL 188

Query:   191 VKQSAQTSRAAQEEDAVAEGIDDEKELEEIRARLAKVRS 229
              +     + AA E++      ++E+ LE +++RLA +RS
Sbjct:   189 PEPEPPGAMAASEDEE-----EEEEALEAMQSRLATLRS 222

GO:0006915 "apoptotic process" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0031902 "late endosome membrane" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005829 "cytosol" evidence=TAS

GO:0016044 "cellular membrane organization" evidence=TAS

GO:0016197 "endosomal transport" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FFB3	VP241_ARATH	No assigned EC number	0.8427	1.0	1.0	yes	no
Q9LXH5	VP242_ARATH	No assigned EC number	0.7236	0.8689	0.995	no	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	229
pfam03357	169	pfam03357, Snf7, Snf7	6e-23
COG5491	204	COG5491, VPS24, Conserved protein implicated in se	8e-05

>gnl|CDD|146145 pfam03357, Snf7, Snf7

 Score = 90.8 bits (226), Expect = 6e-23
 Identities = 44/167 (26%), Positives = 83/167 (49%), Gaps = 2/167 (1%)

Query: 20  DWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQELVRSRKTVNRL 79
           +    LR+  R ++++   ++++ K ++  IK  AK+ +  +A  L ++  R  K +++L
Sbjct: 1   EAILSLRKAIRELDKKQESLEKKIKKLEAEIKKLAKKGNKDAALILLKQKKRYEKQLDQL 60

Query: 80  YENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKA 139
               A +  + M +  +      +  +   A+ MK +N  M   ++   M E   +M KA
Sbjct: 61  DGQLANLEQVRMAIENAKTNQEVLNAMKGGAKAMKAMNKNMDIDKIDDLMDEIEDQMEKA 120

Query: 140 GVIEEFVNDAVDTALDSEDIEEEIEEEVDKVLTAIAGETAAQLPEAV 186
             I E ++D +D A D ED EEE++ E+D +L  I  E   +LP A 
Sbjct: 121 DEISEMLSDTLDDA-DEED-EEELDAELDALLDEIGDEELVELPSAP 165

This family of proteins are involved in protein sorting and transport from the endosome to the vacuole/lysosome in eukaryotic cells. Vacuoles/lysosomes play an important role in the degradation of both lipids and cellular proteins. In order to perform this degradative function, vacuoles/lysosomes contain numerous hydrolases which have been transported in the form of inactive precursors via the biosynthetic pathway and are proteolytically activated upon delivery to the vacuole/lysosome. The delivery of transmembrane proteins, such as activated cell surface receptors to the lumen of the vacuole/lysosome, either for degradation/downregulation, or in the case of hydrolases, for proper localisation, requires the formation of multivesicular bodies (MVBs). These late endosomal structures are formed by invaginating and budding of the limiting membrane into the lumen of the compartment. During this process, a subset of the endosomal membrane proteins is sorted into the forming vesicles. Mature MVBs fuse with the vacuole/lysosome, thereby releasing cargo containing vesicles into its hydrolytic lumen for degradation. Endosomal proteins that are not sorted into the intralumenal MVB vesicles are either recycled back to the plasma membrane or Golgi complex, or remain in the limiting membrane of the MVB and are thereby transported to the limiting membrane of the vacuole/lysosome as a consequence of fusion. Therefore, the MVB sorting pathway plays a critical role in the decision between recycling and degradation of membrane proteins. A few archaeal sequences are also present within this family. Length = 169

>gnl|CDD|227778 COG5491, VPS24, Conserved protein implicated in secretion [Cell motility and secretion]

 Score = 41.7 bits (98), Expect = 8e-05
 Identities = 35/148 (23%), Positives = 72/148 (48%), Gaps = 3/148 (2%)

Query: 30  RNIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQELVRSRKTVNRLYENKAQMNSI 89
           R  ++ +R++++E K  Q  + + AK     + + LA+EL + RK  +RL  + +++ S+
Sbjct: 7   RQAKKLVRELKQEAKKGQVLLNEIAK--KAPNRRRLAEELYKLRKARSRLDASISRLQSL 64

Query: 90  SMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDA 149
              L E V + +  G + K+A  M  + ++ +  ++  T    + E+ +  +        
Sbjct: 65  DTMLFEKVVMRQVSGDMAKAAMYMNELESIRRIMQLFETQFL-ALELVQLRLETMDELMD 123

Query: 150 VDTALDSEDIEEEIEEEVDKVLTAIAGE 177
           V       +  EE++E V+KVL  I  E
Sbjct: 124 VVVGDPVLEDLEELDELVNKVLPEIGLE 151

Length = 204

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	229
KOG3230	224	consensus Vacuolar assembly/sorting protein DID4 [	100.0
KOG3229	227	consensus Vacuolar sorting protein VPS24 [Intracel	100.0
KOG3231	208	consensus Predicted assembly/vacuolar sorting prot	100.0
KOG3232	203	consensus Vacuolar assembly/sorting protein DID2 [	100.0
PF03357	171	Snf7: Snf7; InterPro: IPR005024 This is a family o	99.92
KOG1656	221	consensus Protein involved in glucose derepression	99.88
PTZ00464	211	SNF-7-like protein; Provisional	99.82
PTZ00446	191	vacuolar sorting protein SNF7-like; Provisional	99.72
COG5491	204	VPS24 Conserved protein implicated in secretion [C	99.55
KOG2910	209	consensus Uncharacterized conserved protein predic	99.31
KOG1655	218	consensus Protein involved in vacuolar protein sor	99.04
KOG3230	224	consensus Vacuolar assembly/sorting protein DID4 [	98.89
KOG2911	439	consensus Uncharacterized conserved protein [Funct	98.88
KOG3229	227	consensus Vacuolar sorting protein VPS24 [Intracel	97.69
KOG3231	208	consensus Predicted assembly/vacuolar sorting prot	97.57
PF03357	171	Snf7: Snf7; InterPro: IPR005024 This is a family o	97.51
PRK10698	222	phage shock protein PspA; Provisional	97.38
PTZ00464	211	SNF-7-like protein; Provisional	97.32
COG5491	204	VPS24 Conserved protein implicated in secretion [C	97.24
PTZ00446	191	vacuolar sorting protein SNF7-like; Provisional	97.23
TIGR02977	219	phageshock_pspA phage shock protein A. Members of	96.5
KOG1656	221	consensus Protein involved in glucose derepression	95.56
PF04012	221	PspA_IM30: PspA/IM30 family; InterPro: IPR007157 T	95.39
KOG1655	218	consensus Protein involved in vacuolar protein sor	94.92
COG1842	225	PspA Phage shock protein A (IM30), suppresses sigm	90.46
KOG2911	439	consensus Uncharacterized conserved protein [Funct	90.39
PRK07352	174	F0F1 ATP synthase subunit B; Validated	89.79
KOG2910	209	consensus Uncharacterized conserved protein predic	86.71
COG1937	89	Uncharacterized protein conserved in bacteria [Fun	84.84
PF03398	165	Ist1: Regulator of Vps4 activity in the MVB pathwa	83.8
PRK06231	205	F0F1 ATP synthase subunit B; Validated	82.74
TIGR01144	147	ATP_synt_b ATP synthase, F0 subunit b. This model	82.19
PRK13428	445	F0F1 ATP synthase subunit delta; Provisional	81.58

>KOG3230 consensus Vacuolar assembly/sorting protein DID4 [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.3e-55  Score=362.14  Aligned_cols=222  Identities=27%  Similarity=0.434  Sum_probs=196.5

Q ss_pred             hhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027050            5 MNMIKPKPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQELVRSRKTVNRLYENKA   84 (229)
Q Consensus         5 ~~~f~~~~~~ke~lr~~~~~Lr~~~R~LdRe~~~le~~ekkl~~~Ik~aakkg~~~~akilAk~lvr~rk~~~~l~~~~a   84 (229)
                      |++||++++|.|.||+++|.|.+++|+|+|++.+++-+|||+..+||+.||.|+.+++||+||+|||+|+++.+|+.+++
T Consensus         1 m~lFgk~~tp~e~Lr~nqRal~~a~ReleRer~~le~qeKklvaeIKk~AK~gq~~A~KimAkdLvRtR~~i~kf~~~ka   80 (224)
T KOG3230|consen    1 MDLFGKKKTPAELLRENQRALNKATRELERERQKLELQEKKLVAEIKKTAKQGQMDAVKIMAKDLVRTRRYIKKFQNMKA   80 (224)
T ss_pred             CCcccCCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHhhhchHHHHHhhHhhhccCccchHHHHH
Q 027050           85 QMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSEDIEEEIE  164 (229)
Q Consensus        85 ~l~sv~~ql~ta~~~~~~~~am~~s~~~M~~~n~~m~~~~l~~~M~ef~~e~~~~~~~~e~m~d~~d~~~d~~~~eee~d  164 (229)
                      +|.+|++++|+..+...++.+|+++|++|..||+.||+|+++++|++|++|++.||+.+|||+|++|++++++++|||+|
T Consensus        81 qiqaVSl~iQtlkss~sma~aMkGaTkam~~MNrqmnlpq~qkIm~eFekQse~Mdm~~Emm~daIDdal~~~edEEEtd  160 (224)
T KOG3230|consen   81 QIQAVSLRIQTLKSSTSMAQAMKGATKAMAGMNRQMNLPQIQKIMQEFEKQSEIMDMKEEMMDDAIDDALGDDEDEEETD  160 (224)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcchhhhhCchhhhhhhhhhhhhhh-hhhhhhhhhhccCCChhhHHHHHHHHHhhhC
Q 027050          165 EEVDKVLTAIAGETAAQLPEAVRKERVKQSAQTS-RAAQEEDAVAEGIDDEKELEEIRARLAKVRS  229 (229)
Q Consensus       165 ~~v~qvldEig~~~~~~l~~~p~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ddl~~RL~aLr~  229 (229)
                      ++|+|||||||++++++|.++|.. ..+.|.... -.+++..+.++. ..+. .|||++||++||.
T Consensus       161 ~lvnqVLDEiGvdl~~qL~~~P~~-~~~~~~a~~ig~~~a~~~gs~~-~~~~-dddLqaRL~~Lrk  223 (224)
T KOG3230|consen  161 DLVNQVLDEIGVDLASQLSSLPSA-AGSLPIAKTIGGKKAEAAGSEF-HSDA-DDDLQARLDNLRK  223 (224)
T ss_pred             HHHHHHHHHHcccHHHHhccCccc-ccccchhhccCCcccccccccc-CCCc-hhHHHHHHHHHhc
Confidence            999999999999999999988874 222222110 000111111111 1233 3899999999984

>KOG3229 consensus Vacuolar sorting protein VPS24 [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.1e-53  Score=353.38  Aligned_cols=224  Identities=53%  Similarity=0.804  Sum_probs=201.9

Q ss_pred             hhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027050            5 MNMIKPKPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQELVRSRKTVNRLYENKA   84 (229)
Q Consensus         5 ~~~f~~~~~~ke~lr~~~~~Lr~~~R~LdRe~~~le~~ekkl~~~Ik~aakkg~~~~akilAk~lvr~rk~~~~l~~~~a   84 (229)
                      ++.|+ +|||||++|+|++.||++.|.|||+++.|++++++++..||++||+||.++||+|||++++.|+++.|||..+|
T Consensus         4 ~~~~~-~pdPKEq~r~wq~kiRke~r~ldrqir~iqree~kv~~~iK~aAKknD~~t~~iLAKEiv~srk~v~Rly~sKA   82 (227)
T KOG3229|consen    4 FGKTP-GPDPKEQVREWQSKIRKEGRQLDRQIRDIQREEEKVQKSIKQAAKKNDKDTCRILAKEIVQSRKAVKRLYESKA   82 (227)
T ss_pred             cccCC-CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence            34443 89999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHhhhchHHHHHhhHhhhccCccchHHHHH
Q 027050           85 QMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSEDIEEEIE  164 (229)
Q Consensus        85 ~l~sv~~ql~ta~~~~~~~~am~~s~~~M~~~n~~m~~~~l~~~M~ef~~e~~~~~~~~e~m~d~~d~~~d~~~~eee~d  164 (229)
                      ||+||+++|..+.++..+.|+|++|+++|+.||+++.+|+|..||++|++|++++|+|+||++|+|+++.|.++++++.|
T Consensus        83 qlnSv~M~l~eqla~~r~~G~lqkStevMk~v~sLvk~Pel~~TMrelSkEmmKaGIIEEmvdet~esv~d~eemeEe~d  162 (227)
T KOG3229|consen   83 QLNSVSMQLKEQLATLRVAGSLQKSTEVMKAVNSLVKLPELAATMRELSKEMMKAGIIEEMVDETMESVEDSEEMEEEAD  162 (227)
T ss_pred             HHhhHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999888999999


Q ss_pred             HHHHHHHHHhcchhhhhCchhhhhhhhhhhhhhhhhhhhhhhhhccCCChhhHHHHHHHHHhhhC
Q 027050          165 EEVDKVLTAIAGETAAQLPEAVRKERVKQSAQTSRAAQEEDAVAEGIDDEKELEEIRARLAKVRS  229 (229)
Q Consensus       165 ~~v~qvldEig~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ddl~~RL~aLr~  229 (229)
                      ++|++||.+|+.+..+.+|.+|.....++|...........++++++++++++.+|+.||++|||
T Consensus       163 eEVdkIL~~it~~~~~~~p~a~~~~~~~~~~~~a~p~~~~~a~~d~~e~eE~le~mr~RLa~lrs  227 (227)
T KOG3229|consen  163 EEVDKILTEITGEKAGEAPLAVTATLAAVPAEKASPSAKEDAAEDGVEEEEELEEMRSRLAALRS  227 (227)
T ss_pred             HHHHHHHHHHhccccccCCcchHHHHhcCccccCCCcchhhhhhccchHHHHHHHHHHHHHHhcC
Confidence            99999999999999999998888644444432111111223455566667889999999999997

>KOG3231 consensus Predicted assembly/vacuolar sorting protein [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.9e-46  Score=300.23  Aligned_cols=208  Identities=27%  Similarity=0.419  Sum_probs=192.2

Q ss_pred             hhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027050            5 MNMIKPKPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQELVRSRKTVNRLYENKA   84 (229)
Q Consensus         5 ~~~f~~~~~~ke~lr~~~~~Lr~~~R~LdRe~~~le~~ekkl~~~Ik~aakkg~~~~akilAk~lvr~rk~~~~l~~~~a   84 (229)
                      +++|+ +|||+|..|++.|.||++.|.|+|+.++++++|++|+.+||+.|+.|+.++||+|||+||..|||+++-+.+.+
T Consensus         1 ~niF~-Kktvke~~ren~ReLRkt~RdierdRr~me~~Ek~LElEIkk~Aa~GnndAcr~LAKQLV~lRkQKtrt~a~s~   79 (208)
T KOG3231|consen    1 ANIFK-KKTVKEVIRENNRELRKTQRDIERDRRAMEKQEKQLELEIKKMAAIGNNDACRVLAKQLVHLRKQKTRTFAVSS   79 (208)
T ss_pred             CCccc-CCCHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHhhhhhhhhhh
Confidence            36887 77999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHhhhchHHHHHhhHhhhccCccchHHHHH
Q 027050           85 QMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSEDIEEEIE  164 (229)
Q Consensus        85 ~l~sv~~ql~ta~~~~~~~~am~~s~~~M~~~n~~m~~~~l~~~M~ef~~e~~~~~~~~e~m~d~~d~~~d~~~~eee~d  164 (229)
                      ++.+++.|-..+.++.++.++|+.+++.|+.||+.|+++++..+|++|++..++|++.+|||+|++|+.+|..+++||.+
T Consensus        80 ki~s~~~QnK~M~s~~km~~AMgTTaKTM~amNk~M~pek~~~tmr~FQ~anmKMemTeEMiNDTLDdild~sgDeeEs~  159 (208)
T KOG3231|consen   80 KITSMSTQNKVMNSQMKMAGAMGTTAKTMQAMNKKMDPEKTLQTMRNFQKANMKMEMTEEMINDTLDDILDGSGDEEESQ  159 (208)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHhchHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHhcCCCcHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcchhhhhCchhhhhhhhhhhhhhhhhhhhhhhhhccCCChhhHHHHHHHHHhhhC
Q 027050          165 EEVDKVLTAIAGETAAQLPEAVRKERVKQSAQTSRAAQEEDAVAEGIDDEKELEEIRARLAKVRS  229 (229)
Q Consensus       165 ~~v~qvldEig~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ddl~~RL~aLr~  229 (229)
                      ++|+||||||||++++++.++|...  ..|+.+  .            .....+|+...|++|||
T Consensus       160 aiVNqVLDEIGIEisgKma~~P~a~--s~~~~s--t------------~kat~~Die~QLa~Lrs  208 (208)
T KOG3231|consen  160 AIVNQVLDEIGIEISGKMAKAPSAR--SLPSAS--T------------SKATISDIERQLAALRS  208 (208)
T ss_pred             HHHHHHHHHhhhhhcchhccCCccC--CCCccc--c------------CCCcHHHHHHHHHHhcC
Confidence            9999999999999999999999641  111110  0            11345789999999996

>KOG3232 consensus Vacuolar assembly/sorting protein DID2 [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=4.3e-38  Score=254.48  Aligned_cols=198  Identities=16%  Similarity=0.291  Sum_probs=180.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027050           16 QLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGE   95 (229)
Q Consensus        16 e~lr~~~~~Lr~~~R~LdRe~~~le~~ekkl~~~Ik~aakkg~~~~akilAk~lvr~rk~~~~l~~~~a~l~sv~~ql~t   95 (229)
                      ..+....+.|+++.++|+|+..+|+++||..+.++|+|+++||.+.+||||.++||.|++.-+|+++.+++++|..++||
T Consensus         5 ~~le~~lf~LkF~sk~L~r~a~kceKeEK~Ek~K~kkAi~kgN~dvArIyAeNAIRkkne~~n~LrlssRvDAVaaRvqT   84 (203)
T KOG3232|consen    5 DKLENHLFDLKFTSKQLQRQAKKCEKEEKAEKAKLKKAIQKGNMDVARIYAENAIRKKNEAVNYLRLSSRVDAVAARVQT   84 (203)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHhhhchHHHHHhhHhhhccCccchHHHHHHHHHHHHHHhc
Q 027050           96 SVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSEDIEEEIEEEVDKVLTAIA  175 (229)
Q Consensus        96 a~~~~~~~~am~~s~~~M~~~n~~m~~~~l~~~M~ef~~e~~~~~~~~e~m~d~~d~~~d~~~~eee~d~~v~qvldEig  175 (229)
                      |.+|..++++|.++++.|....+.||+++|+.+|+.|++||+.+++..++|+++|++.+.-..|.+++|.++++|.||.|
T Consensus        85 avtmr~Vt~sM~gVvK~md~alktmNLekis~~MDkFE~qFedldvqt~~me~~m~~st~l~tpq~~Vd~Lmq~vADeaG  164 (203)
T KOG3232|consen   85 AVTMRKVTKSMAGVVKSMDSALKTMNLEKISQLMDKFEKQFEDLDVQTEVMEKAMSGSTALSTPQGDVDSLMQQVADEAG  164 (203)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhHHHHHHHhccCcccccCChhHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999999999999999888778899999999999999999


Q ss_pred             chhhhhCchhhhhhhhhhhhhhhhhhhhhhhhhccCCChhhHHHHHHHHHhhhC
Q 027050          176 GETAAQLPEAVRKERVKQSAQTSRAAQEEDAVAEGIDDEKELEEIRARLAKVRS  229 (229)
Q Consensus       176 ~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ddl~~RL~aLr~  229 (229)
                      ++++..||.-..+   +.|+            .+.+..+++ |+|.+||++||+
T Consensus       165 lElnq~lp~~~~~---a~~~------------~t~~~~~e~-d~L~qRLaaLR~  202 (203)
T KOG3232|consen  165 LELNQELPQNVVP---AISV------------KTSAVVDEE-DDLTQRLAALRA  202 (203)
T ss_pred             hhhhhcCCCCCCC---CcCC------------CCccccchh-hHHHHHHHHHhc
Confidence            9999999974311   0111            111112334 899999999995

>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7

Probab=99.92  E-value=1.6e-24  Score=177.29  Aligned_cols=167  Identities=25%  Similarity=0.397  Sum_probs=136.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027050           20 DWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAI   99 (229)
Q Consensus        20 ~~~~~Lr~~~R~LdRe~~~le~~ekkl~~~Ik~aakkg~~~~akilAk~lvr~rk~~~~l~~~~a~l~sv~~ql~ta~~~   99 (229)
                      ++.+.|+.+++.|++.+.+|+...+++..++++++++|+...|++|++...+.+++..+++....+|++|..+++++..+
T Consensus         1 eai~~Lk~~~~~L~~~~~~le~~i~~~~~~~k~~~~~~~~~~A~~~lk~~k~~~k~~~~~~~~~~~l~~~~~~ie~a~~~   80 (171)
T PF03357_consen    1 EAILKLKKTIRRLEKQIKRLEKKIKKLEKKAKKAIKKGNKERAKIYLKRKKRLEKQLEKLLNQLSNLESVLLQIETAQSN   80 (171)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHhhhchHHHHHhhHhhhccCccchHHHHHHHHHHHHHHhcchh-
Q 027050          100 ARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSEDIEEEIEEEVDKVLTAIAGET-  178 (229)
Q Consensus       100 ~~~~~am~~s~~~M~~~n~~m~~~~l~~~M~ef~~e~~~~~~~~e~m~d~~d~~~d~~~~eee~d~~v~qvldEig~~~-  178 (229)
                      ..+..+|..++++|+.+|+.+++++|..+|++|..+++.+++++++|++.++..  ++.++++.+++++++++|++.+. 
T Consensus        81 ~~v~~al~~~~~~Lk~~~~~i~~~~v~~~~d~~~e~~e~~~ei~~~l~~~~~~~--~~~dd~ele~eL~~l~~e~~~~~~  158 (171)
T PF03357_consen   81 QQVVKALKQSSKALKKINKQINLDKVEKLMDDFQEEMEDQDEISEALSDSMDQV--DDVDDEELEEELEQLEDEIEEEEE  158 (171)
T ss_dssp             HHHSSS----SHHHHHHHHSTTSCCHHHHHHHHHHHHHHHTS------------------TTSTTCHHHHHHHCCCTTS-
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHccccCC--CCCCHHHHHHHHHHHHHHHhhhhh
Confidence            999999999999999999999999999999999999999999999999988654  23345678889999999999988 


Q ss_pred             -hhhCchhhhh
Q 027050          179 -AAQLPEAVRK  188 (229)
Q Consensus       179 -~~~l~~~p~~  188 (229)
                       ...||++|.+
T Consensus       159 ~~~~lp~~P~~  169 (171)
T PF03357_consen  159 EKQQLPSVPST  169 (171)
T ss_dssp             -SS-SS---HH
T ss_pred             ccccCCcCCCC
Confidence             8899999875

The family contains human CHMP1. CHMP1 (CHromatin Modifying Protein; CHarged Multivesicular body Protein), is encoded by an alternative open reading frame in the PRSM1 gene [] and is conserved in both complex and simple eukaryotes. CHMP1 contains a predicted bipartite nuclear localisation signal and distributes as distinct forms to the cytoplasm and the nuclear matrix in all cell lines tested. Human CHMP1 is strongly implicated in multivesicular body formation. A multivesicular body is a vesicle-filled endosome that targets proteins to the interior of lysosomes. Immunocytochemistry and biochemical fractionation localise CHMP1 to early endosomes and CHMP1 physically interacts with SKD1/VPS4, a highly conserved protein directly linked to multivesicular body sorting in yeast. Similar to the action of a mutant SKD1 protein, over expression of a fusion derivative of human CHMP1 dilates endosomal compartments and disrupts the normal distribution of several endosomal markers. Genetic studies in Saccharomyces cerevisiae (Baker's yeast) further support a conserved role of CHMP1 in vesicle trafficking. Deletion of CHM1, the budding yeast homologue of CHMP1, results in defective sorting of carboxypeptidases S and Y and produces abnormal, multi-lamellar prevacuolar compartments. This phenotype classifies CHM1 as a member of the class E vacuolar protein sorting genes []. ; GO: 0015031 protein transport; PDB: 2V6X_B 2W2U_D 2GD5_D 3FRT_B 3FRV_A 4ABM_D 3EAB_H 3HTU_D.

>KOG1656 consensus Protein involved in glucose derepression and pre-vacuolar endosome protein sorting [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.88  E-value=5.4e-21  Score=158.75  Aligned_cols=176  Identities=19%  Similarity=0.325  Sum_probs=142.7

Q ss_pred             ChhhhhhhCC-----CCCHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 027050            1 MEKVMNMIKP-----KPNPQQLL---RDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQELVRS   72 (229)
Q Consensus         1 M~~~~~~f~~-----~~~~ke~l---r~~~~~Lr~~~R~LdRe~~~le~~ekkl~~~Ik~aakkg~~~~akilAk~lvr~   72 (229)
                      |++|.+|||+     +++|+|.+   |+....|-          .+.+..++++..++...|++.-.. .|..|.+++++
T Consensus         1 ms~~~~~FG~~k~~~~~t~~eaI~kLrEteemL~----------KKqe~Le~ki~~e~e~~A~k~~tk-NKR~AlqaLkr   69 (221)
T KOG1656|consen    1 MSMFSRLFGGMKQEAKPTPQEAIQKLRETEEMLE----------KKQEFLEKKIEQEVENNARKYGTK-NKRMALQALKR   69 (221)
T ss_pred             CcHHHHHhCcccccCCCChHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHH
Confidence            7888899986     36787664   44444443          477888999999999877776555 46667776666


Q ss_pred             HHHHH-HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHhhhchHHHHHhh
Q 027050           73 RKTVN-RLYENKAQMNSISMH---LGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVND  148 (229)
Q Consensus        73 rk~~~-~l~~~~a~l~sv~~q---l~ta~~~~~~~~am~~s~~~M~~~n~~m~~~~l~~~M~ef~~e~~~~~~~~e~m~d  148 (229)
                      +|.+. .|.+....+..+..|   |++|+++..+..+|+.++++|+.+++.||+++|..+|+++..|.+.+..|+++|+.
T Consensus        70 KK~~E~qL~qidG~l~tie~Qr~alEnA~~n~Evl~~m~~~A~AmK~~h~~mDiDkVdd~MdeI~eQqe~a~eIseAiS~  149 (221)
T KOG1656|consen   70 KKRYEKQLAQIDGTLSTIEFQREALENANTNTEVLDAMGSAAKAMKAAHKNMDIDKVDDLMDEIAEQQEVAEEISEAISA  149 (221)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            66664 477888889999988   78999999999999999999999999999999999999999999999999999999


Q ss_pred             Hhh--hccCccchHHHHHHHHHHHHHHhcchhhh---hCchhhh
Q 027050          149 AVD--TALDSEDIEEEIEEEVDKVLTAIAGETAA---QLPEAVR  187 (229)
Q Consensus       149 ~~d--~~~d~~~~eee~d~~v~qvldEig~~~~~---~l~~~p~  187 (229)
                      ++.  ..+|++++..|.|++-+..||.-.+++..   .||++|+
T Consensus       150 Pvg~~a~~DEDEL~~ELdeLeqeeld~~ll~~~~p~v~LP~vPs  193 (221)
T KOG1656|consen  150 PVGFGADFDEDELMAELDELEQEELDKELLDIRAPPVPLPDVPS  193 (221)
T ss_pred             ccccccccCHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCc
Confidence            984  44888888889999998888887666543   3455553

>PTZ00464 SNF-7-like protein; Provisional

Probab=99.82  E-value=1.1e-18  Score=148.54  Aligned_cols=183  Identities=14%  Similarity=0.205  Sum_probs=146.0

Q ss_pred             hhhhCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH----H
Q 027050            5 MNMIKPKP-NPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQELVRSRKTVNR----L   79 (229)
Q Consensus         5 ~~~f~~~~-~~ke~lr~~~~~Lr~~~R~LdRe~~~le~~ekkl~~~Ik~aakkg~~~~akilAk~lvr~rk~~~~----l   79 (229)
                      .+|||+++ .|+-.+.+....|+.....|++.+.+|+.+..+.+..+++....+. ...|.-|..++|.||...+    +
T Consensus         2 ~rlFG~~k~~p~~t~~d~~~~l~~r~~~l~kKi~~ld~E~~~ak~~~k~~~~~~~-~~~K~~Al~~LK~KK~~E~ql~~l   80 (211)
T PTZ00464          2 NRLFGKKNKTPKPTLEDASKRIGGRSEVVDARINKIDAELMKLKEQIQRTRGMTQ-SRHKQRAMQLLQQKRMYQNQQDMM   80 (211)
T ss_pred             ccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhh-hHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46898653 5666788888999999999999999999888888877766432222 3368899999999997755    5


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHhhhchHHHHHhhHhh--hccCcc
Q 027050           80 YENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVD--TALDSE  157 (229)
Q Consensus        80 ~~~~a~l~sv~~ql~ta~~~~~~~~am~~s~~~M~~~n~~m~~~~l~~~M~ef~~e~~~~~~~~e~m~d~~d--~~~d~~  157 (229)
                      +....+|..+...|+++..+..+..+|+.++++|+.+|+.|++++|..+|+++..+++..+.|+++++..++  +.+|++
T Consensus        81 ~~q~~nleq~~~~ie~a~~~~~vv~amk~g~kaLK~~~k~i~id~Vd~l~Dei~E~~e~~~EI~e~Ls~~~~~~~~~DEd  160 (211)
T PTZ00464         81 MQQQFNMDQLQFTTESVKDTKVQVDAMKQAAKTLKKQFKKLNVDKVEDLQDELADLYEDTQEIQEIMGRAYDVPDDIDED  160 (211)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHH
Confidence            556666777778899999999999999999999999999999999999999999999999999999998763  446666


Q ss_pred             chHHHHHHHHHHHHHHhcchhhhhCchhhhh
Q 027050          158 DIEEEIEEEVDKVLTAIAGETAAQLPEAVRK  188 (229)
Q Consensus       158 ~~eee~d~~v~qvldEig~~~~~~l~~~p~~  188 (229)
                      ++++|.+++..++..|.........|++|..
T Consensus       161 ELe~ELe~Le~e~~~e~~~~~l~~~~~~p~~  191 (211)
T PTZ00464        161 EMLGELDALDFDMEKEADASYLADALAVPGT  191 (211)
T ss_pred             HHHHHHHHHHHHHhccccchhhhccccCCCC
Confidence            6666666666665555544445667777764

>PTZ00446 vacuolar sorting protein SNF7-like; Provisional

Probab=99.72  E-value=1.5e-15  Score=127.27  Aligned_cols=153  Identities=14%  Similarity=0.181  Sum_probs=113.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH---H
Q 027050           18 LRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQELVRSRKTVNR-LYENKAQMNSISMH---L   93 (229)
Q Consensus        18 lr~~~~~Lr~~~R~LdRe~~~le~~ekkl~~~Ik~aakkg~~~~akilAk~lvr~rk~~~~-l~~~~a~l~sv~~q---l   93 (229)
                      +.+....|+.+...|+.-...|+..-.+.....|++.++|+    |.-|..+++.||...+ +.++.+++..|+.+   +
T Consensus        25 ~~~AIl~Lk~~~~~L~krq~~Le~kIe~e~~~Ak~~~~~~k----k~~Al~~LkrKK~~E~ql~q~~~ql~nLEq~~~~i  100 (191)
T PTZ00446         25 IYKAILKNREAIDALEKKQVQVEKKIKQLEIEAKQKVEQNQ----MSNAKILLKRKKLYEQEIENILNNRLTLEDNMINL  100 (191)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444445554444444444444444444444566666676    3458899999998866 55777777776655   7


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHhhhchHHHHHhhHhhhccCccchHHHHHHHHHHHHHH
Q 027050           94 GESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSEDIEEEIEEEVDKVLTA  173 (229)
Q Consensus        94 ~ta~~~~~~~~am~~s~~~M~~~n~~m~~~~l~~~M~ef~~e~~~~~~~~e~m~d~~d~~~d~~~~eee~d~~v~qvldE  173 (229)
                      +++..+..+..+|+.++++|+.+|+.|++++|..+|+++..+++..+.|+++++..+.+..|++++++|.+++..+-|++
T Consensus       101 E~a~~~~ev~~aLk~g~~aLK~~~k~~~idkVd~lmDei~E~~e~~~EIseaLs~~~~~~~DEdELe~ELe~Le~e~l~~  180 (191)
T PTZ00446        101 ENMHLHKIAVNALSYAANTHKKLNNEINTQKVEKIIDTIQENKDIQEEINQALSFNLLNNVDDDEIDKELDLLKEQTMEE  180 (191)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence            89999999999999999999999999999999999999999999999999999876434467677777777777666665


Q ss_pred             h
Q 027050          174 I  174 (229)
Q Consensus       174 i  174 (229)
                      -
T Consensus       181 ~  181 (191)
T PTZ00446        181 K  181 (191)
T ss_pred             H
Confidence            3

>COG5491 VPS24 Conserved protein implicated in secretion [Cell motility and secretion]

Probab=99.55  E-value=5.1e-13  Score=112.79  Aligned_cols=186  Identities=23%  Similarity=0.308  Sum_probs=121.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027050           32 IERQIRDIQREEKNVQKAIKDAAKRN--DLSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKS  109 (229)
Q Consensus        32 LdRe~~~le~~ekkl~~~Ik~aakkg--~~~~akilAk~lvr~rk~~~~l~~~~a~l~sv~~ql~ta~~~~~~~~am~~s  109 (229)
                      ++|++.++-.+.+........+.++.  +....+++++.+++.+++..||...+++|.++.+.+.....|..+++-|.++
T Consensus         5 ~~~~~~k~~~~~k~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~~~~srL~~~~sRLqs~~~~~~e~~~m~~v~~~~~~a   84 (204)
T COG5491           5 LERQAKKLVRELKQEAKKGQVLLNEIAKKAPNRRRLAEELYKLRKARSRLDASISRLQSLDTMLFEKVVMRQVSGDMAKA   84 (204)
T ss_pred             HHHHHHHhhhhhhhHhHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence            44444444444444443333332221  5667889999999999999999988888888888887777777776666666


Q ss_pred             HHHHHHHHhhCC-hHHHHHHHHHHHHHHhhhchHH---HHHhhHhhhccC--ccchHHHHHHHHHHHHHHhcchhh---h
Q 027050          110 AEVMKLVNNLMK-APEVAATMQEFSKEMTKAGVIE---EFVNDAVDTALD--SEDIEEEIEEEVDKVLTAIAGETA---A  180 (229)
Q Consensus       110 ~~~M~~~n~~m~-~~~l~~~M~ef~~e~~~~~~~~---e~m~d~~d~~~d--~~~~eee~d~~v~qvldEig~~~~---~  180 (229)
                             +..|| ++.|.++|+.|..++..++...   |.|.+.++...+  ..++.+++|++++.|++|+|+++.   .
T Consensus        85 -------~~~mnel~~i~ri~~~~et~~~~mE~~~~~le~m~e~~~v~~~~~v~~~l~~lde~v~~v~pEi~lel~~~~~  157 (204)
T COG5491          85 -------AMYMNELESIRRIMQLFETQFLALELVQLRLETMDELMDVVVGDPVLEDLEELDELVNKVLPEIGLELDESEQ  157 (204)
T ss_pred             -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhhhhHHHHHHHHHhhchhhhhhhhhHhh
Confidence                   44445 6788899999999998888877   677666666654  345778999999999999999888   5


Q ss_pred             hCchhhhhhhhhhhhhhhhhhhhhhhhhccCCChhhHHHHHHHHHhhhC
Q 027050          181 QLPEAVRKERVKQSAQTSRAAQEEDAVAEGIDDEKELEEIRARLAKVRS  229 (229)
Q Consensus       181 ~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ddl~~RL~aLr~  229 (229)
                      .+|.+... ....|+  ...|++..+.. +. +....+.|++||..|++
T Consensus       158 ~~~~~~~~-~~~~~a--~~~~ea~~ile-ea-~~~aE~~l~e~~~~L~~  201 (204)
T COG5491         158 SLPANVVE-NGSVPA--AVSPEARKILE-EA-EKIAEDRLQERLRELPA  201 (204)
T ss_pred             cchhhhhc-cccccc--ccChhhhhhHH-HH-HhhHHHHHHHHHHhccc
Confidence            55542221 001111  11111111111 11 12224899999999874

>KOG2910 consensus Uncharacterized conserved protein predicted to be involved in protein sorting [General function prediction only]

Probab=99.31  E-value=9.1e-10  Score=91.24  Aligned_cols=172  Identities=14%  Similarity=0.233  Sum_probs=128.1

Q ss_pred             hhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH-HHH
Q 027050            5 MNMIKPKPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQELVRSRKTVNRLY-ENK   83 (229)
Q Consensus         5 ~~~f~~~~~~ke~lr~~~~~Lr~~~R~LdRe~~~le~~ekkl~~~Ik~aakkg~~~~akilAk~lvr~rk~~~~l~-~~~   83 (229)
                      .++|++++---+ .-...-.|+.+-+.|-+..+++++.....+..-+++++.|..+.    |+-+++.+++...|+ ++.
T Consensus         2 G~lfsK~~~Itd-~DrAIL~lK~QRdkl~qyqkR~e~~le~Er~~Ar~lird~rKdr----AlllLKkKryQE~Ll~qt~   76 (209)
T KOG2910|consen    2 GNLFSKKSRITD-QDRAILSLKTQRDKLKQYQKRLEKQLEAERQLARDLIRDGRKDR----ALLLLKKKRYQEELLTQTD   76 (209)
T ss_pred             CccccCCCCcch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHH----HHHHHHHHHHHHHHHHHHH
Confidence            467886332222 23345566666677777777888877778888889999998654    455678888888866 888


Q ss_pred             HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHhhhchHHHHHhhHhhhccCccchH
Q 027050           84 AQMNSISMHLGES---VAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSEDIE  160 (229)
Q Consensus        84 a~l~sv~~ql~ta---~~~~~~~~am~~s~~~M~~~n~~m~~~~l~~~M~ef~~e~~~~~~~~e~m~d~~d~~~d~~~~e  160 (229)
                      .+|..|+..+.+.   .-..+++.+++..+.+++.+|+.|+++.|+++|++-....+-.+.+++|+++.|.. .|+    
T Consensus        77 ~qL~nlEqmvsdiEft~vqk~V~~gLk~GN~~lkkl~~~~~ideV~rimddt~ea~~YQ~Ein~~L~~~ls~-~dE----  151 (209)
T KOG2910|consen   77 NQLINLEQMVSDIEFTQVQKKVMEGLKQGNEALKKLQQEFDIDEVDRIMDDTQEAIEYQDEINAILSGSLSA-EDE----  151 (209)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhHHHHHHHHHHHHHHHHhhccc-ccH----
Confidence            8899888876655   44558999999999999999999999999999999999999999999999998873 233    


Q ss_pred             HHHHHHHHHHHHHhcchhhhhCchhhhh
Q 027050          161 EEIEEEVDKVLTAIAGETAAQLPEAVRK  188 (229)
Q Consensus       161 ee~d~~v~qvldEig~~~~~~l~~~p~~  188 (229)
                      ++..++++.+..|.-.+  .++|.+|+.
T Consensus       152 ddi~~EldaLese~~~e--~e~PevPs~  177 (209)
T KOG2910|consen  152 DDILAELDALESELEVE--AELPEVPST  177 (209)
T ss_pred             HHHHHHHHHHHHHhhhh--hhcCCCCCC
Confidence            34444444444444332  567888765

>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.04  E-value=3.6e-08  Score=82.20  Aligned_cols=166  Identities=16%  Similarity=0.213  Sum_probs=126.8

Q ss_pred             hhhhCCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHH---
Q 027050            5 MNMIKPKP--NPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRND-LSSAKSLAQELVRSRKTVNR---   78 (229)
Q Consensus         5 ~~~f~~~~--~~ke~lr~~~~~Lr~~~R~LdRe~~~le~~ekkl~~~Ik~aakkg~-~~~akilAk~lvr~rk~~~~---   78 (229)
                      .++||+++  .|--.|.++...+.+..-.|+.-|.+|+.+=-+++.+|++. .-|. ..+.|--|-.+++.||.+++   
T Consensus         2 nRiFG~~k~k~p~psL~dai~~v~~r~dSve~KIskLDaeL~k~~~Qi~k~-R~gpaq~~~KqrAlrVLkQKK~yE~q~d   80 (218)
T KOG1655|consen    2 NRIFGRGKPKEPPPSLQDAIDSVNKRSDSVEKKISKLDAELCKYKDQIKKT-RPGPAQNALKQRALRVLKQKKMYENQKD   80 (218)
T ss_pred             cccccCCCCCCCChhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhc-CCCcchhHHHHHHHHHHHHHHHHHHHHH
Confidence            57898643  44556999999999999999999999999999999999885 4454 44566667777777766644   


Q ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHhhhchHHHHHhhHhhhccCcc
Q 027050           79 -LYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSE  157 (229)
Q Consensus        79 -l~~~~a~l~sv~~ql~ta~~~~~~~~am~~s~~~M~~~n~~m~~~~l~~~M~ef~~e~~~~~~~~e~m~d~~d~~~d~~  157 (229)
                       |+.-.-.|+.+.+-.++...+..++.+|+.+++.|+..-+.+++.+|...=+++.-=++..+.++|.++...+.-.   
T Consensus        81 ~L~~QsfNMeQa~~t~e~LKdtq~Tv~AmK~~~k~mK~~ykkvnId~IedlQDem~Dlmd~a~EiQE~Lgr~y~~pe---  157 (218)
T KOG1655|consen   81 SLDQQSFNMEQANFTAESLKDTQATVAAMKDTNKEMKKQYKKVNIDKIEDLQDEMEDLMDQADEIQEVLGRNYNTPD---  157 (218)
T ss_pred             HHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC---
Confidence             3333333666666677777888899999999999999999999999999988998889999999999988765431   


Q ss_pred             chHHHHHHHHHHHHHHh
Q 027050          158 DIEEEIEEEVDKVLTAI  174 (229)
Q Consensus       158 ~~eee~d~~v~qvldEi  174 (229)
                      .+|++.+++++-..+|.
T Consensus       158 ide~dL~aELdaL~~E~  174 (218)
T KOG1655|consen  158 IDEADLDAELDALGQEL  174 (218)
T ss_pred             cCHHHHHHHHHHHHhHh
Confidence            23334455555554443

>KOG3230 consensus Vacuolar assembly/sorting protein DID4 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.89  E-value=3.3e-07  Score=76.50  Aligned_cols=159  Identities=18%  Similarity=0.271  Sum_probs=125.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH--HHHHHHHHHHHHHHHHH---HHHHHHHHHH
Q 027050           21 WQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQE--LVRSRKTVNRLYENKAQ---MNSISMHLGE   95 (229)
Q Consensus        21 ~~~~Lr~~~R~LdRe~~~le~~ekkl~~~Ik~aakkg~~~~akilAk~--lvr~rk~~~~l~~~~a~---l~sv~~ql~t   95 (229)
                      ....||.+.|.|++-++.|+|+..+++.+-|+.     +...|-.||+  .--.|-..+.|.+++-+   +.....||+.
T Consensus        10 p~e~Lr~nqRal~~a~ReleRer~~le~qeKkl-----vaeIKk~AK~gq~~A~KimAkdLvRtR~~i~kf~~~kaqiqa   84 (224)
T KOG3230|consen   10 PAELLRENQRALNKATRELERERQKLELQEKKL-----VAEIKKTAKQGQMDAVKIMAKDLVRTRRYIKKFQNMKAQIQA   84 (224)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            356799999999999999999999999999887     4556777776  44555566777777766   4556677877


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHH-----HHHHHHHhhhchHHHHHhhHhhhccCccchHHHHHHHHHHH
Q 027050           96 SVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATM-----QEFSKEMTKAGVIEEFVNDAVDTALDSEDIEEEIEEEVDKV  170 (229)
Q Consensus        96 a~~~~~~~~am~~s~~~M~~~n~~m~~~~l~~~M-----~ef~~e~~~~~~~~e~m~d~~d~~~d~~~~eee~d~~v~qv  170 (229)
                      ...-.+...+-...+.+|+.+.+.  +..+++.|     +.+.+||++-..+-+|-.+.|++++|+.-.+++.+++.+.+
T Consensus        85 VSl~iQtlkss~sma~aMkGaTka--m~~MNrqmnlpq~qkIm~eFekQse~Mdm~~Emm~daIDdal~~~edEEEtd~l  162 (224)
T KOG3230|consen   85 VSLRIQTLKSSTSMAQAMKGATKA--MAGMNRQMNLPQIQKIMQEFEKQSEIMDMKEEMMDDAIDDALGDDEDEEETDDL  162 (224)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHH--HHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHH
Confidence            765555555555555559999888  44666665     89999999999999999999999999876688899999999


Q ss_pred             HHHhcchhhhhCchhh
Q 027050          171 LTAIAGETAAQLPEAV  186 (229)
Q Consensus       171 ldEig~~~~~~l~~~p  186 (229)
                      ++.+..+++-.|.+--
T Consensus       163 vnqVLDEiGvdl~~qL  178 (224)
T KOG3230|consen  163 VNQVLDEIGVDLASQL  178 (224)
T ss_pred             HHHHHHHHcccHHHHh
Confidence            9999888887776643

>KOG2911 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.88  E-value=1.9e-07  Score=86.10  Aligned_cols=134  Identities=12%  Similarity=0.133  Sum_probs=119.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027050           19 RDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVA   98 (229)
Q Consensus        19 r~~~~~Lr~~~R~LdRe~~~le~~ekkl~~~Ik~aakkg~~~~akilAk~lvr~rk~~~~l~~~~a~l~sv~~ql~ta~~   98 (229)
                      --..-.|.++.-.|.|++..|+.+=++...+.+.+.|.|...-|..|++..-+.=|-..+.....-+|.+|-.++.++.+
T Consensus       232 D~~V~~L~~~~~~L~kqie~L~qeie~~~~~~r~~~k~g~K~iA~~ylr~rk~~eK~~er~~~~l~~l~~vl~~Id~s~~  311 (439)
T KOG2911|consen  232 DGSVADLIQARAKLAKQIEFLEQEIEKSKEKLRQALKEGKKQIAITYLRARKLLEKDLERKVSSLNNLETVLSQIDNSQT  311 (439)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcc
Confidence            33567888999999999999999999999999999999998877777777777777778888888899999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHh-hCChHHHHHHHHHHHHHHhhhchHHHHHhhHhhh
Q 027050           99 IARTVGHLNKSAEVMKLVNN-LMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDT  152 (229)
Q Consensus        99 ~~~~~~am~~s~~~M~~~n~-~m~~~~l~~~M~ef~~e~~~~~~~~e~m~d~~d~  152 (229)
                      +.-+..+++.++.+|+.++. ...++++..+|+++..-++....+++.|....-.
T Consensus       312 nkvvl~AyksGs~alK~il~~~~s~ekVed~Ldev~et~d~~~EV~~~la~~~~~  366 (439)
T KOG2911|consen  312 NKVVLQAYKSGSEALKAILAQGGSTEKVEDVLDEVNETLDRQEEVEDALASYNVN  366 (439)
T ss_pred             cHHHHHHHHHhHHHHHHHHhccCChhhHHHHHHHHHHHHhhHHHHHHHHhcCCCC
Confidence            99999999999999999999 5578889999999999999999999888876644

>KOG3229 consensus Vacuolar sorting protein VPS24 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.69  E-value=0.0089  Score=50.69  Aligned_cols=173  Identities=17%  Similarity=0.202  Sum_probs=108.6

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027050           11 KPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQELVRSRKTVNRLYENKAQMNSIS   90 (229)
Q Consensus        11 ~~~~ke~lr~~~~~Lr~~~R~LdRe~~~le~~ekkl~~~Ik~aakkg~~~~akilAk~lvr~rk~~~~l~~~~a~l~sv~   90 (229)
                      +.+|.--+++..|.+++-+|.=-|++.+.=+.=+..+.+.++++|+--..+=+.-++-|   -|.+-+..+.-.+|-.=.
T Consensus         5 ~~~~~pdPKEq~r~wq~kiRke~r~ldrqir~iqree~kv~~~iK~aAKknD~~t~~iL---AKEiv~srk~v~Rly~sK   81 (227)
T KOG3229|consen    5 GKTPGPDPKEQVREWQSKIRKEGRQLDRQIRDIQREEEKVQKSIKQAAKKNDKDTCRIL---AKEIVQSRKAVKRLYESK   81 (227)
T ss_pred             ccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHH---HHHHHHHHHHHHHHHHhH
Confidence            45677779999999999998877777777777777777777776653333222222222   233333344444555555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHH--H---HHHHHHhhhchHHHHHhhHhhhccCccchHHHHHH
Q 027050           91 MHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATM--Q---EFSKEMTKAGVIEEFVNDAVDTALDSEDIEEEIEE  165 (229)
Q Consensus        91 ~ql~ta~~~~~~~~am~~s~~~M~~~n~~m~~~~l~~~M--~---ef~~e~~~~~~~~e~m~d~~d~~~d~~~~eee~d~  165 (229)
                      .||.+......=.=+|-.++..|......|.  .++..|  +   .--++|.+==+...+|++++|+.++..++.++.++
T Consensus        82 AqlnSv~M~l~eqla~~r~~G~lqkStevMk--~v~sLvk~Pel~~TMrelSkEmmKaGIIEEmvdet~esv~d~eemeE  159 (227)
T KOG3229|consen   82 AQLNSVSMQLKEQLATLRVAGSLQKSTEVMK--AVNSLVKLPELAATMRELSKEMMKAGIIEEMVDETMESVEDSEEMEE  159 (227)
T ss_pred             HHHhhHHHHHHHHHHHHHHHhhHHhHHHHHH--HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHH
Confidence            6666554333333344444444555444432  233332  2   23344444456677888999999999888888999


Q ss_pred             HHHHHHHHhcchh-hhhCchhhhh
Q 027050          166 EVDKVLTAIAGET-AAQLPEAVRK  188 (229)
Q Consensus       166 ~v~qvldEig~~~-~~~l~~~p~~  188 (229)
                      .++.-+|.|.-.+ +..++.+|..
T Consensus       160 e~deEVdkIL~~it~~~~~~~p~a  183 (227)
T KOG3229|consen  160 EADEEVDKILTEITGEKAGEAPLA  183 (227)
T ss_pred             HHHHHHHHHHHHHhccccccCCcc
Confidence            9999999998754 5677888865

>KOG3231 consensus Predicted assembly/vacuolar sorting protein [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.57  E-value=0.004  Score=51.11  Aligned_cols=156  Identities=17%  Similarity=0.224  Sum_probs=95.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027050           24 KLRQECRNIERQIRDIQREEKNVQKAIKDA---AKRNDLSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIA  100 (229)
Q Consensus        24 ~Lr~~~R~LdRe~~~le~~ekkl~~~Ik~a---akkg~~~~akilAk~lvr~rk~~~~l~~~~a~l~sv~~ql~ta~~~~  100 (229)
                      .+|.+-|+|-.--+.+++...+++.+-|+.   +|+.-...-.-.   +--.-||.-.|-.-+++--+++.++++..+.+
T Consensus        12 ~~ren~ReLRkt~RdierdRr~me~~Ek~LElEIkk~Aa~GnndA---cr~LAKQLV~lRkQKtrt~a~s~ki~s~~~Qn   88 (208)
T KOG3231|consen   12 VIRENNRELRKTQRDIERDRRAMEKQEKQLELEIKKMAAIGNNDA---CRVLAKQLVHLRKQKTRTFAVSSKITSMSTQN   88 (208)
T ss_pred             HHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHH---HHHHHHHHHHHHHhhhhhhhhhhhhhhhHHHH
Confidence            334444455555555666666666655544   222111111111   22223555556666777778888888888888


Q ss_pred             HHHHHHHHHHHHHHHHHhhCChHHHHHHH-----HHHHHHHhhhchHHHHHhhHhhhccCccchHHHHHHHHHHHHHHhc
Q 027050          101 RTVGHLNKSAEVMKLVNNLMKAPEVAATM-----QEFSKEMTKAGVIEEFVNDAVDTALDSEDIEEEIEEEVDKVLTAIA  175 (229)
Q Consensus       101 ~~~~am~~s~~~M~~~n~~m~~~~l~~~M-----~ef~~e~~~~~~~~e~m~d~~d~~~d~~~~eee~d~~v~qvldEig  175 (229)
                      ++++++.+.+.+|+.--+-|  ..+.+.|     -+--++|....+.-||-++++++.+|+--+....+++-+.|++.+.
T Consensus        89 K~M~s~~km~~AMgTTaKTM--~amNk~M~pek~~~tmr~FQ~anmKMemTeEMiNDTLDdild~sgDeeEs~aiVNqVL  166 (208)
T KOG3231|consen   89 KVMNSQMKMAGAMGTTAKTM--QAMNKKMDPEKTLQTMRNFQKANMKMEMTEEMINDTLDDILDGSGDEEESQAIVNQVL  166 (208)
T ss_pred             HHHHHHHHHHHHhchHHHHH--HHHHccCCHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHhcCCCcHHHHHHHHHHHH
Confidence            88888888888787665543  2343333     2334678888888888888888877764444445667777888777


Q ss_pred             chhhhhCch
Q 027050          176 GETAAQLPE  184 (229)
Q Consensus       176 ~~~~~~l~~  184 (229)
                      .+++-.+.+
T Consensus       167 DEIGIEisg  175 (208)
T KOG3231|consen  167 DEIGIEISG  175 (208)
T ss_pred             HHhhhhhcc
Confidence            776666554

>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7

Probab=97.51  E-value=0.00051  Score=55.73  Aligned_cols=147  Identities=16%  Similarity=0.232  Sum_probs=80.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH---HHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027050           28 ECRNIERQIRDIQREEKNVQKAIKDA---AKRNDLSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVG  104 (229)
Q Consensus        28 ~~R~LdRe~~~le~~ekkl~~~Ik~a---akkg~~~~akilAk~lvr~rk~~~~l~~~~a~l~sv~~ql~ta~~~~~~~~  104 (229)
                      +++.|...+..|++..+++..+|++.   +++--...-+..|+.+++.++...+   ...++.....+|++.........
T Consensus         2 ai~~Lk~~~~~L~~~~~~le~~i~~~~~~~k~~~~~~~~~~A~~~lk~~k~~~k---~~~~~~~~~~~l~~~~~~ie~a~   78 (171)
T PF03357_consen    2 AILKLKKTIRRLEKQIKRLEKKIKKLEKKAKKAIKKGNKERAKIYLKRKKRLEK---QLEKLLNQLSNLESVLLQIETAQ   78 (171)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCTT-HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence            57788999999999999999998875   3333334456777777777766544   34455566667777777777777


Q ss_pred             HHHHHHHHHHHHHhhCChHHHHHHHH--HHHHHHhhhchHHHHHhh--HhhhccCccch--HHHHHHHHHHHHHHhcchh
Q 027050          105 HLNKSAEVMKLVNNLMKAPEVAATMQ--EFSKEMTKAGVIEEFVND--AVDTALDSEDI--EEEIEEEVDKVLTAIAGET  178 (229)
Q Consensus       105 am~~s~~~M~~~n~~m~~~~l~~~M~--ef~~e~~~~~~~~e~m~d--~~d~~~d~~~~--eee~d~~v~qvldEig~~~  178 (229)
                      ....+..+|+..++.  +.++.+.|.  ++..-+   +-+.+.+++  -+.+.+.+...  .+..+++++..|+++..+.
T Consensus        79 ~~~~v~~al~~~~~~--Lk~~~~~i~~~~v~~~~---d~~~e~~e~~~ei~~~l~~~~~~~~~~dd~ele~eL~~l~~e~  153 (171)
T PF03357_consen   79 SNQQVVKALKQSSKA--LKKINKQINLDKVEKLM---DDFQEEMEDQDEISEALSDSMDQVDDVDDEELEEELEQLEDEI  153 (171)
T ss_dssp             HHHHHSSS----SHH--HHHHHHSTTSCCHHHHH---HHHHHHHHHHTS----------------TTSTTCHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHH--HHHHHHhhhhhhHHHHH---HHHHHHHHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHH
Confidence            777777778777776  334444332  111111   111222111  12223332221  4566777888888876665


Q ss_pred             hhhC
Q 027050          179 AAQL  182 (229)
Q Consensus       179 ~~~l  182 (229)
                      ....
T Consensus       154 ~~~~  157 (171)
T PF03357_consen  154 EEEE  157 (171)
T ss_dssp             CTTS
T ss_pred             hhhh
Confidence            5543

The family contains human CHMP1. CHMP1 (CHromatin Modifying Protein; CHarged Multivesicular body Protein), is encoded by an alternative open reading frame in the PRSM1 gene [] and is conserved in both complex and simple eukaryotes. CHMP1 contains a predicted bipartite nuclear localisation signal and distributes as distinct forms to the cytoplasm and the nuclear matrix in all cell lines tested. Human CHMP1 is strongly implicated in multivesicular body formation. A multivesicular body is a vesicle-filled endosome that targets proteins to the interior of lysosomes. Immunocytochemistry and biochemical fractionation localise CHMP1 to early endosomes and CHMP1 physically interacts with SKD1/VPS4, a highly conserved protein directly linked to multivesicular body sorting in yeast. Similar to the action of a mutant SKD1 protein, over expression of a fusion derivative of human CHMP1 dilates endosomal compartments and disrupts the normal distribution of several endosomal markers. Genetic studies in Saccharomyces cerevisiae (Baker's yeast) further support a conserved role of CHMP1 in vesicle trafficking. Deletion of CHM1, the budding yeast homologue of CHMP1, results in defective sorting of carboxypeptidases S and Y and produces abnormal, multi-lamellar prevacuolar compartments. This phenotype classifies CHM1 as a member of the class E vacuolar protein sorting genes []. ; GO: 0015031 protein transport; PDB: 2V6X_B 2W2U_D 2GD5_D 3FRT_B 3FRV_A 4ABM_D 3EAB_H 3HTU_D.

>PRK10698 phage shock protein PspA; Provisional

Probab=97.38  E-value=0.067  Score=46.13  Aligned_cols=129  Identities=15%  Similarity=0.216  Sum_probs=89.6

Q ss_pred             CCCCHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHH-------HHHH
Q 027050           10 PKPNPQQLLRDWQRKLRQE--------------CRNIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKS-------LAQE   68 (229)
Q Consensus        10 ~~~~~ke~lr~~~~~Lr~~--------------~R~LdRe~~~le~~ekkl~~~Ik~aakkg~~~~aki-------lAk~   68 (229)
                      +--||...++...+.++..              .+.++|++..++..-.+...+-..|..+|+-+-||-       |+..
T Consensus        21 kaEDP~k~l~q~i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~kA~~Al~~G~EdLAr~AL~~K~~~~~~  100 (222)
T PRK10698         21 KAEDPQKLVRLMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQEKAELALRKEKEDLARAALIEKQKLTDL  100 (222)
T ss_pred             hhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence            3458886766666665543              456777777777777777788888899999888887       7777


Q ss_pred             HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHhh
Q 027050           69 LVRSRKTVNRLY----ENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTK  138 (229)
Q Consensus        69 lvr~rk~~~~l~----~~~a~l~sv~~ql~ta~~~~~~~~am~~s~~~M~~~n~~m~~~~l~~~M~ef~~e~~~  138 (229)
                      +...+.+.....    .++.++..+..+|+.+.+-..+..+=..++.+...+|..+.--.....|..|.+=-++
T Consensus       101 ~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a~~~~~~~~~~~~~~~a~~~f~rmE~k  174 (222)
T PRK10698        101 IATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAASSSRDVRRQLDSGKLDEAMARFESFERR  174 (222)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHH
Confidence            777776665433    4566667777777777777777777677777777777776655556666665554333

>PTZ00464 SNF-7-like protein; Provisional

Probab=97.32  E-value=0.088  Score=45.17  Aligned_cols=147  Identities=10%  Similarity=0.115  Sum_probs=73.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027050           25 LRQECRNIERQIRDIQREEKNVQKAIKDA---AKRNDLSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIAR  101 (229)
Q Consensus        25 Lr~~~R~LdRe~~~le~~ekkl~~~Ik~a---akkg~~~~akilAk~lvr~rk~~~~l~~~~a~l~sv~~ql~ta~~~~~  101 (229)
                      ++.++..|+.....|++..+++..++..+   ++++...+-...-+.+++.=+.+..|.....++.+....|+.+..+..
T Consensus        16 ~~d~~~~l~~r~~~l~kKi~~ld~E~~~ak~~~k~~~~~~~~~~K~~Al~~LK~KK~~E~ql~~l~~q~~nleq~~~~ie   95 (211)
T PTZ00464         16 LEDASKRIGGRSEVVDARINKIDAELMKLKEQIQRTRGMTQSRHKQRAMQLLQQKRMYQNQQDMMMQQQFNMDQLQFTTE   95 (211)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45555666666666666666666554333   222221111112333444444555555555566666666666666665


Q ss_pred             HHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHhhhchHHHHH------hhHhhhccC--ccchHHHHHHHHHHHHHH
Q 027050          102 TVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFV------NDAVDTALD--SEDIEEEIEEEVDKVLTA  173 (229)
Q Consensus       102 ~~~am~~s~~~M~~~n~~m~~~~l~~~M~ef~~e~~~~~~~~e~m------~d~~d~~~d--~~~~eee~d~~v~qvldE  173 (229)
                      ....-..+..+|+..++.  +..+.+-| .+.+-=..++-+.|+|      +++|...++  ++.+|+|.+++++....|
T Consensus        96 ~a~~~~~vv~amk~g~ka--LK~~~k~i-~id~Vd~l~Dei~E~~e~~~EI~e~Ls~~~~~~~~~DEdELe~ELe~Le~e  172 (211)
T PTZ00464         96 SVKDTKVQVDAMKQAAKT--LKKQFKKL-NVDKVEDLQDELADLYEDTQEIQEIMGRAYDVPDDIDEDEMLGELDALDFD  172 (211)
T ss_pred             HHHHHHHHHHHHHHHHHH--HHHHHhcC-CHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHH
Confidence            555556666667777766  33444443 2332223333333333      334444442  233555666666666666


Q ss_pred             h
Q 027050          174 I  174 (229)
Q Consensus       174 i  174 (229)
                      +
T Consensus       173 ~  173 (211)
T PTZ00464        173 M  173 (211)
T ss_pred             H
Confidence            4

>COG5491 VPS24 Conserved protein implicated in secretion [Cell motility and secretion]

Probab=97.24  E-value=0.019  Score=48.97  Aligned_cols=143  Identities=14%  Similarity=0.148  Sum_probs=99.7

Q ss_pred             HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027050           39 IQREEKNVQKAIKDAAKRNDLSSAKSLAQELVRSRKTVN--RLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLV  116 (229)
Q Consensus        39 le~~ekkl~~~Ik~aakkg~~~~akilAk~lvr~rk~~~--~l~~~~a~l~sv~~ql~ta~~~~~~~~am~~s~~~M~~~  116 (229)
                      +++.-++....+|...++|.....++-.+.-.+.|....  ++...+++|+.+.++|++..++.....+|..+   -+.+
T Consensus         5 ~~~~~~k~~~~~k~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~~~~srL~~~~sRLqs~~~~~~e~~~m~~v---~~~~   81 (204)
T COG5491           5 LERQAKKLVRELKQEAKKGQVLLNEIAKKAPNRRRLAEELYKLRKARSRLDASISRLQSLDTMLFEKVVMRQV---SGDM   81 (204)
T ss_pred             HHHHHHHhhhhhhhHhHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hccH
Confidence            778888999999999999988777766666677776666  88899999999999999988777776666665   2233


Q ss_pred             HhhCChHHHHHHHHHHHHHHhhhchHHHHHh---hHhhhccCccc--hHHHHHHHHHHHHHHhcchhhhhCch
Q 027050          117 NNLMKAPEVAATMQEFSKEMTKAGVIEEFVN---DAVDTALDSED--IEEEIEEEVDKVLTAIAGETAAQLPE  184 (229)
Q Consensus       117 n~~m~~~~l~~~M~ef~~e~~~~~~~~e~m~---d~~d~~~d~~~--~eee~d~~v~qvldEig~~~~~~l~~  184 (229)
                      .+..-+-.=-..+..+.+.++.+...-|.+.   +++...++...  +..+..+.++..+..+.-+++-.|..
T Consensus        82 ~~a~~~mnel~~i~ri~~~~et~~~~mE~~~~~le~m~e~~~v~~~~~v~~~l~~lde~v~~v~pEi~lel~~  154 (204)
T COG5491          82 AKAAMYMNELESIRRIMQLFETQFLALELVQLRLETMDELMDVVVGDPVLEDLEELDELVNKVLPEIGLELDE  154 (204)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhhhhHHHHHHHHHhhchhhhhhhhh
Confidence            3221111101234567778888887777887   56655555544  35566777777777776666655543

>PTZ00446 vacuolar sorting protein SNF7-like; Provisional

Probab=97.23  E-value=0.019  Score=48.50  Aligned_cols=156  Identities=13%  Similarity=0.121  Sum_probs=95.9

Q ss_pred             hhhhCCC-CCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH---------HH
Q 027050            5 MNMIKPK-PNP--QQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQELV---------RS   72 (229)
Q Consensus         5 ~~~f~~~-~~~--ke~lr~~~~~Lr~~~R~LdRe~~~le~~ekkl~~~Ik~aakkg~~~~akilAk~lv---------r~   72 (229)
                      ..|||++ +.|  .+.-....-...+++-.|-.++..|++.++.|..+|.+.         ...|+.++         +.
T Consensus         2 ~~~fgk~~~~~~~~~~~~~~~~~~~~AIl~Lk~~~~~L~krq~~Le~kIe~e---------~~~Ak~~~~~~kk~~Al~~   72 (191)
T PTZ00446          2 RFWFGKKKNSSECSDNKKKNNDEIYKAILKNREAIDALEKKQVQVEKKIKQL---------EIEAKQKVEQNQMSNAKIL   72 (191)
T ss_pred             ccccCCCCCCCcchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHcccHHHHHHH
Confidence            3489863 344  444444445588888899999999999999999999664         22344333         33


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHhhhchHHH------HH
Q 027050           73 RKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEE------FV  146 (229)
Q Consensus        73 rk~~~~l~~~~a~l~sv~~ql~ta~~~~~~~~am~~s~~~M~~~n~~m~~~~l~~~M~ef~~e~~~~~~~~e------~m  146 (229)
                      =+.++.|.....++.+-...|+.+..+......-..+..+|+..|+.  +..+.+-| .+.+-=..++-+.|      =|
T Consensus        73 LkrKK~~E~ql~q~~~ql~nLEq~~~~iE~a~~~~ev~~aLk~g~~a--LK~~~k~~-~idkVd~lmDei~E~~e~~~EI  149 (191)
T PTZ00446         73 LKRKKLYEQEIENILNNRLTLEDNMINLENMHLHKIAVNALSYAANT--HKKLNNEI-NTQKVEKIIDTIQENKDIQEEI  149 (191)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhcC-CHHHHHHHHHHHHHHHHHHHHH
Confidence            33444455666666666677777777777777777777888888887  44555544 12222222333333      34


Q ss_pred             hhHhhhccCccchHHHHHHHHHHHHH
Q 027050          147 NDAVDTALDSEDIEEEIEEEVDKVLT  172 (229)
Q Consensus       147 ~d~~d~~~d~~~~eee~d~~v~qvld  172 (229)
                      ++++...+.++.+|+|.+++++..-.
T Consensus       150 seaLs~~~~~~~DEdELe~ELe~Le~  175 (191)
T PTZ00446        150 NQALSFNLLNNVDDDEIDKELDLLKE  175 (191)
T ss_pred             HHHHcCCCCCCCCHHHHHHHHHHHHH
Confidence            45565443233466677777765544

>TIGR02977 phageshock_pspA phage shock protein A

Probab=96.50  E-value=0.46  Score=40.69  Aligned_cols=129  Identities=12%  Similarity=0.193  Sum_probs=71.6

Q ss_pred             CCCCHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH-------
Q 027050           10 PKPNPQQLLRDWQRKLRQEC--------------RNIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQE-------   68 (229)
Q Consensus        10 ~~~~~ke~lr~~~~~Lr~~~--------------R~LdRe~~~le~~ekkl~~~Ik~aakkg~~~~akilAk~-------   68 (229)
                      +--||...++...+.++..+              +.++|++..++..-.+...+.+.|.++|+-+-||-.+..       
T Consensus        21 k~EDP~~~l~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~G~EdLAr~Al~~k~~~~~~  100 (219)
T TIGR02977        21 KAEDPEKMIRLIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELALSKGREDLARAALIEKQKAQEL  100 (219)
T ss_pred             hccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence            34588867666666655444              445666666666666777777888889997765544222       


Q ss_pred             HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHhh
Q 027050           69 LVRSRKTVN----RLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTK  138 (229)
Q Consensus        69 lvr~rk~~~----~l~~~~a~l~sv~~ql~ta~~~~~~~~am~~s~~~M~~~n~~m~~~~l~~~M~ef~~e~~~  138 (229)
                      +-+...++.    ....++.+|..+..+++.+.+......+=..++.+...+|..+.--.+...+..|++=-++
T Consensus       101 ~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~A~a~~~~~~~~~~~~~~~a~~~fer~e~k  174 (219)
T TIGR02977       101 AEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQAASSRLDVRRQLDSGRSDEAMARFEQYERR  174 (219)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHH
Confidence            222222222    1224444455555556666555554444444555565666655433445555555554444

Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.

>KOG1656 consensus Protein involved in glucose derepression and pre-vacuolar endosome protein sorting [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.56  E-value=1.3  Score=37.74  Aligned_cols=133  Identities=14%  Similarity=0.208  Sum_probs=85.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027050           35 QIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQE----LVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSA  110 (229)
Q Consensus        35 e~~~le~~ekkl~~~Ik~aakkg~~~~akilAk~----lvr~rk~~~~l~~~~a~l~sv~~ql~ta~~~~~~~~am~~s~  110 (229)
                      -..-|.+.+.-|+.+|-...+.    .||.|+.-    ++..=|-+++|.+--++|+++.+.|.-+..+..-.+.-.-+-
T Consensus        29 teemL~KKqe~Le~ki~~e~e~----~A~k~~tkNKR~AlqaLkrKK~~E~qL~qidG~l~tie~Qr~alEnA~~n~Evl  104 (221)
T KOG1656|consen   29 TEEMLEKKQEFLEKKIEQEVEN----NARKYGTKNKRMALQALKRKKRYEKQLAQIDGTLSTIEFQREALENANTNTEVL  104 (221)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH----HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcccccHHHH
Confidence            4456666666677777654332    25666433    566667778888999999999999999988888887777787


Q ss_pred             HHHHHHHhhCChHHHHHHH-----HHHHHHHhhhchHHHHHhhHhhhccCc--cchHHHHHHHHHHHHHH
Q 027050          111 EVMKLVNNLMKAPEVAATM-----QEFSKEMTKAGVIEEFVNDAVDTALDS--EDIEEEIEEEVDKVLTA  173 (229)
Q Consensus       111 ~~M~~~n~~m~~~~l~~~M-----~ef~~e~~~~~~~~e~m~d~~d~~~d~--~~~eee~d~~v~qvldE  173 (229)
                      .+|+..-+.|+  .+.+.|     +++-.+....-.+.+-|++++..-+.-  +-+|+|..++++..-.|
T Consensus       105 ~~m~~~A~AmK--~~h~~mDiDkVdd~MdeI~eQqe~a~eIseAiS~Pvg~~a~~DEDEL~~ELdeLeqe  172 (221)
T KOG1656|consen  105 DAMGSAAKAMK--AAHKNMDIDKVDDLMDEIAEQQEVAEEISEAISAPVGFGADFDEDELMAELDELEQE  172 (221)
T ss_pred             HHHHHHHHHHH--HHHhccChhHHHHHHHHHHHHHHHHHHHHHHHhCccccccccCHHHHHHHHHHHHHH
Confidence            88888888754  555554     333333333344445567778777652  23444555555444433

>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription

Probab=95.39  E-value=1.5  Score=37.31  Aligned_cols=139  Identities=16%  Similarity=0.231  Sum_probs=73.7

Q ss_pred             CCCCHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Q 027050           10 PKPNPQQLLRDWQRKLRQECR--------------NIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQELVRSRKT   75 (229)
Q Consensus        10 ~~~~~ke~lr~~~~~Lr~~~R--------------~LdRe~~~le~~ekkl~~~Ik~aakkg~~~~akilAk~lvr~rk~   75 (229)
                      +--||...+....+.+...+.              .|++++..++..-.+...+...|.++|+-+.||-++........+
T Consensus        20 ~~EDP~~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr~al~~k~~~e~~   99 (221)
T PF04012_consen   20 KAEDPEKMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAAGREDLAREALQRKADLEEQ   99 (221)
T ss_pred             hhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            345787776666555555444              445555566666666677777788899988888777766555544


Q ss_pred             HHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hCChHHHHHHHHHHHHHHhhhch
Q 027050           76 VNRLYE-----------NKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNN---LMKAPEVAATMQEFSKEMTKAGV  141 (229)
Q Consensus        76 ~~~l~~-----------~~a~l~sv~~ql~ta~~~~~~~~am~~s~~~M~~~n~---~m~~~~l~~~M~ef~~e~~~~~~  141 (229)
                      +..|..           ++.+|..+..++.....-..+..+-..++++-..+|.   .+++......+..++.....+.-
T Consensus       100 ~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~~a~a~~~~~~~~~~~~~~~a~~~~er~e~ki~~~ea  179 (221)
T PF04012_consen  100 AERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARENAAKAQKKVNEALASFSVSSAMDSFERMEEKIEEMEA  179 (221)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchHHHHHHHHHHHHHHHH
Confidence            444332           2333344444444443333333333333333333333   33444444444555555554444


Q ss_pred             HHHHHhh
Q 027050          142 IEEFVND  148 (229)
Q Consensus       142 ~~e~m~d  148 (229)
                      ..+.+.+
T Consensus       180 ~a~a~~e  186 (221)
T PF04012_consen  180 RAEASAE  186 (221)
T ss_pred             HHHHHHH
Confidence            4444443

The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].

>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.92  E-value=2  Score=36.38  Aligned_cols=96  Identities=13%  Similarity=0.198  Sum_probs=56.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027050           25 LRQECRNIERQIRDIQREEKNVQKAIKDA---AKRNDLSSAKSLAQ-ELVRSRKTVNRLYENKAQMNSISMHLGESVAIA  100 (229)
Q Consensus        25 Lr~~~R~LdRe~~~le~~ekkl~~~Ik~a---akkg~~~~akilAk-~lvr~rk~~~~l~~~~a~l~sv~~ql~ta~~~~  100 (229)
                      |+-.+-.++.-...++..=.+|..++.+.   +++=....++..-| .++|+=|+++-|...+-+|.+-+..+..++-+.
T Consensus        17 L~dai~~v~~r~dSve~KIskLDaeL~k~~~Qi~k~R~gpaq~~~KqrAlrVLkQKK~yE~q~d~L~~QsfNMeQa~~t~   96 (218)
T KOG1655|consen   17 LQDAIDSVNKRSDSVEKKISKLDAELCKYKDQIKKTRPGPAQNALKQRALRVLKQKKMYENQKDSLDQQSFNMEQANFTA   96 (218)
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence            44445555555555555555565555433   33333334444433 366666777777777777777777776666666


Q ss_pred             HHHHHHHHHHHHHHHHHhhC
Q 027050          101 RTVGHLNKSAEVMKLVNNLM  120 (229)
Q Consensus       101 ~~~~am~~s~~~M~~~n~~m  120 (229)
                      +..+-...+..+|+.-|+.|
T Consensus        97 e~LKdtq~Tv~AmK~~~k~m  116 (218)
T KOG1655|consen   97 ESLKDTQATVAAMKDTNKEM  116 (218)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            65555555666777777664

>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]

Probab=90.46  E-value=11  Score=32.65  Aligned_cols=130  Identities=13%  Similarity=0.165  Sum_probs=75.8

Q ss_pred             CCCHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Q 027050           11 KPNPQQLLRDWQRKL--------------RQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQELVRSRKTV   76 (229)
Q Consensus        11 ~~~~ke~lr~~~~~L--------------r~~~R~LdRe~~~le~~ekkl~~~Ik~aakkg~~~~akilAk~lvr~rk~~   76 (229)
                      --||+..|....+..              --..+.++|++..+...-.+++.+-..|..+|+-+-|+-.+...-..-+..
T Consensus        22 ~EDp~~~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~E~LAr~al~~~~~le~~~  101 (225)
T COG1842          22 AEDPEKMLEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQAGNEDLAREALEEKQSLEDLA  101 (225)
T ss_pred             hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence            458886654443333              334567788888888888888889999999999665554333322211111


Q ss_pred             -----------HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHhhhchH
Q 027050           77 -----------NRLYENKAQMNSISMHL---GESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVI  142 (229)
Q Consensus        77 -----------~~l~~~~a~l~sv~~ql---~ta~~~~~~~~am~~s~~~M~~~n~~m~~~~l~~~M~ef~~e~~~~~~~  142 (229)
                                 ....+++.++..+..++   .+...+.....+..++...|..+...++.   ...|..|.+--++.+..
T Consensus       102 ~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ar~~~akA~~~v~~~~~~~s~---~sa~~~fer~e~kiee~  178 (225)
T COG1842         102 KALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEALKARKAAAKAQEKVNRSLGGGSS---SSAMAAFERMEEKIEER  178 (225)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc---hhhHHHHHHHHHHHHHH
Confidence                       11223333444444443   33345555556666666667777666665   66677776665554433


Q ss_pred             H
Q 027050          143 E  143 (229)
Q Consensus       143 ~  143 (229)
                      +
T Consensus       179 e  179 (225)
T COG1842         179 E  179 (225)
T ss_pred             H
Confidence            3

>KOG2911 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.39  E-value=16  Score=34.53  Aligned_cols=93  Identities=11%  Similarity=0.167  Sum_probs=49.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Q 027050           23 RKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRND---LSSAKSLAQELVRSRKTVNR-LYENKAQMNSISMHLGESVA   98 (229)
Q Consensus        23 ~~Lr~~~R~LdRe~~~le~~ekkl~~~Ik~aakkg~---~~~akilAk~lvr~rk~~~~-l~~~~a~l~sv~~ql~ta~~   98 (229)
                      ..+.-.+-+|-+-+.+|.++=..|.++|++.-++-.   ...-|-.|...+|.|+-.++ +.+.-+.++    +|++..+
T Consensus       229 t~~D~~V~~L~~~~~~L~kqie~L~qeie~~~~~~r~~~k~g~K~iA~~ylr~rk~~eK~~er~~~~l~----~l~~vl~  304 (439)
T KOG2911|consen  229 TEIDGSVADLIQARAKLAKQIEFLEQEIEKSKEKLRQALKEGKKQIAITYLRARKLLEKDLERKVSSLN----NLETVLS  304 (439)
T ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhHHHHHHHHH----HHHHHHH
Confidence            344455666666667777777777777766644432   12235566666666665544 334444433    3444444


Q ss_pred             HHHHHHHHHHHHHHHHHHHhh
Q 027050           99 IARTVGHLNKSAEVMKLVNNL  119 (229)
Q Consensus        99 ~~~~~~am~~s~~~M~~~n~~  119 (229)
                      +...+..-+-+-.+++.-+..
T Consensus       305 ~Id~s~~nkvvl~AyksGs~a  325 (439)
T KOG2911|consen  305 QIDNSQTNKVVLQAYKSGSEA  325 (439)
T ss_pred             HHHhhcccHHHHHHHHHhHHH
Confidence            444444444444456666555

>PRK07352 F0F1 ATP synthase subunit B; Validated

Probab=89.79  E-value=9.9  Score=31.15  Aligned_cols=49  Identities=12%  Similarity=0.215  Sum_probs=29.4

Q ss_pred             hhhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027050            4 VMNMIKPKPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDA   53 (229)
Q Consensus         4 ~~~~f~~~~~~ke~lr~~~~~Lr~~~R~LdRe~~~le~~ekkl~~~Ik~a   53 (229)
                      +.+||+++| ....+.+=+..+.......+......+......+.++.++
T Consensus        35 lL~~fl~kp-I~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~~~~~~L~~a   83 (174)
T PRK07352         35 LLYYFGRGF-LGKILEERREAILQALKEAEERLRQAAQALAEAQQKLAQA   83 (174)
T ss_pred             HHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            356677666 4555666666666666666666555555555555555554

>KOG2910 consensus Uncharacterized conserved protein predicted to be involved in protein sorting [General function prediction only]

Probab=86.71  E-value=18  Score=30.60  Aligned_cols=93  Identities=18%  Similarity=0.231  Sum_probs=46.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH-HH-HHHHHHH----HHHHHHH---HHHHHHHHHH
Q 027050           32 IERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQELVRSRKTV-NR-LYENKAQ----MNSISMH---LGESVAIART  102 (229)
Q Consensus        32 LdRe~~~le~~ekkl~~~Ik~aakkg~~~~akilAk~lvr~rk~~-~~-l~~~~a~----l~sv~~q---l~ta~~~~~~  102 (229)
                      -||-|-.|..+.-++.+=.|+..+.  ...=|-+|++|+|-..-- .. +++-+-.    |..+..+   |+.+.+....
T Consensus        14 ~DrAIL~lK~QRdkl~qyqkR~e~~--le~Er~~Ar~lird~rKdrAlllLKkKryQE~Ll~qt~~qL~nlEqmvsdiEf   91 (209)
T KOG2910|consen   14 QDRAILSLKTQRDKLKQYQKRLEKQ--LEAERQLARDLIRDGRKDRALLLLKKKRYQEELLTQTDNQLINLEQMVSDIEF   91 (209)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455555555544444444433222  344588999999864332 22 2222222    3334444   3444555555


Q ss_pred             HHHHHHHHHHHHHHHhhCChHHHHHH
Q 027050          103 VGHLNKSAEVMKLVNNLMKAPEVAAT  128 (229)
Q Consensus       103 ~~am~~s~~~M~~~n~~m~~~~l~~~  128 (229)
                      +.--+.+...++.-|..  +.+++..
T Consensus        92 t~vqk~V~~gLk~GN~~--lkkl~~~  115 (209)
T KOG2910|consen   92 TQVQKKVMEGLKQGNEA--LKKLQQE  115 (209)
T ss_pred             HHHHHHHHHHHHHHHHH--HHHHHHh
Confidence            55555666666666665  3344443

>COG1937 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=84.84  E-value=14  Score=27.46  Aligned_cols=49  Identities=16%  Similarity=0.165  Sum_probs=39.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027050           71 RSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNL  119 (229)
Q Consensus        71 r~rk~~~~l~~~~a~l~sv~~ql~ta~~~~~~~~am~~s~~~M~~~n~~  119 (229)
                      .+++..+||-+...|+.+|..-|+.-.-...+...+..+..++..++..
T Consensus         7 ~kkkl~~RlrRi~GQv~gI~rMlEe~~~C~dVl~QIaAVr~Al~~~~~~   55 (89)
T COG1937           7 EKKKLLNRLRRIEGQVRGIERMLEEDRDCIDVLQQIAAVRGALNGLMRE   55 (89)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            3567778899999999999999988888888888887776666666544

>PF03398 Ist1: Regulator of Vps4 activity in the MVB pathway; InterPro: IPR005061 This is a eukaryotic protein family of unknown function

Probab=83.80  E-value=22  Score=29.06  Aligned_cols=103  Identities=12%  Similarity=0.087  Sum_probs=77.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q 027050           23 RKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIA--  100 (229)
Q Consensus        23 ~~Lr~~~R~LdRe~~~le~~ekkl~~~Ik~aakkg~~~~akilAk~lvr~rk~~~~l~~~~a~l~sv~~ql~ta~~~~--  100 (229)
                      ..|+-.+..|.-..++....-++...+|-...+.|+.+.||+-+.++++-.+...=|.-.....+-+..++.......  
T Consensus         2 ~~lkla~~Rl~~l~~K~~~~~~~~rkdIa~LL~~g~~~~Ar~rvE~li~ed~~~e~~e~Le~yce~l~~r~~~i~~~k~~   81 (165)
T PF03398_consen    2 TQLKLAISRLKLLQNKRQAQAKQARKDIAQLLKNGKEESARIRVEQLIREDNMIEAYEILELYCELLLARFSLIEKSKEC   81 (165)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHCT-TSS
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCC
Confidence            456667777777788888888999999999999999999999999999999999999988888888888876654433  


Q ss_pred             --HHHHHHHHHHHHHHHHHhhCChHHHHHH
Q 027050          101 --RTVGHLNKSAEVMKLVNNLMKAPEVAAT  128 (229)
Q Consensus       101 --~~~~am~~s~~~M~~~n~~m~~~~l~~~  128 (229)
                        .+-.++.+.   +=.....-++|++..+
T Consensus        82 p~~l~eAi~si---iyAa~r~~elpEL~~v  108 (165)
T PF03398_consen   82 PPELKEAISSI---IYAAPRCGELPELQEV  108 (165)
T ss_dssp             SCCHHHHHHHH---HHHHHHHTTTCCHHHH
T ss_pred             CHHHHHHHHHH---HHHhhhccCChhHHHH
Confidence              233344443   5555555577776543

; PDB: 3GGZ_B 3GGY_B 3FRR_A 3FRS_A.

>PRK06231 F0F1 ATP synthase subunit B; Validated

Probab=82.74  E-value=29  Score=29.46  Aligned_cols=49  Identities=16%  Similarity=0.181  Sum_probs=28.4

Q ss_pred             hhhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027050            4 VMNMIKPKPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDA   53 (229)
Q Consensus         4 ~~~~f~~~~~~ke~lr~~~~~Lr~~~R~LdRe~~~le~~ekkl~~~Ik~a   53 (229)
                      +.++|+++| ....+.+=+..+.....+.+......+......+.++.++
T Consensus        64 lL~k~l~kP-i~~~L~~R~~~I~~~L~~Ae~~~~eA~~~l~e~e~~L~~A  112 (205)
T PRK06231         64 LGIFLFWKP-TQRFLNKRKELIEAEINQANELKQQAQQLLENAKQRHENA  112 (205)
T ss_pred             HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345566566 4555666666666666666665555555555555555444

>TIGR01144 ATP_synt_b ATP synthase, F0 subunit b

Probab=82.19  E-value=23  Score=27.92  Aligned_cols=49  Identities=18%  Similarity=0.198  Sum_probs=30.5

Q ss_pred             hhhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027050            4 VMNMIKPKPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDA   53 (229)
Q Consensus         4 ~~~~f~~~~~~ke~lr~~~~~Lr~~~R~LdRe~~~le~~ekkl~~~Ik~a   53 (229)
                      +.++|+++| ....+.+=...+.....+.+......+......+..+.++
T Consensus        11 il~~~~~~p-i~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~~~~l~~A   59 (147)
T TIGR01144        11 FCMKYVWPP-LAKAIETRQKKIADGLASAERAKKEAALAQKKAQVILKEA   59 (147)
T ss_pred             HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345566566 4566666666777766666666666666666666665554

This model describes the F1/F0 ATP synthase b subunit in bacteria only. Scoring just below the trusted cutoff are the N-terminal domains of Mycobacterial b/delta fusion proteins and a subunit from an archaeon, Methanosarcina barkeri, in which the ATP synthase homolog differs in architecture and is not experimentally confirmed. This model helps resolve b from the related b' subunit. Within the family is an example from a sodium-translocating rather than proton-translocating ATP synthase.

>PRK13428 F0F1 ATP synthase subunit delta; Provisional

Probab=81.58  E-value=49  Score=31.42  Aligned_cols=133  Identities=15%  Similarity=0.229  Sum_probs=70.9

Q ss_pred             hhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-------HHHHHHHHHHHHHHHHHHH
Q 027050            5 MNMIKPKPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRND-------LSSAKSLAQELVRSRKTVN   77 (229)
Q Consensus         5 ~~~f~~~~~~ke~lr~~~~~Lr~~~R~LdRe~~~le~~ekkl~~~Ik~aakkg~-------~~~akilAk~lvr~rk~~~   77 (229)
                      .++|+++| ....+.+=+..+.....+.+.-..+++....+.+..+.++-+...       ..+.++...-+-..++...
T Consensus        18 L~kfl~~P-i~~~l~~R~~~I~~~L~eAe~a~~ea~~~~~~~e~~L~~Ak~ea~~Ii~~A~~~A~~~~~~~~~~A~~ea~   96 (445)
T PRK13428         18 VWRFVVPP-VRRLMAARQDTVRQQLAESATAADRLAEADQAHTKAVEDAKAEAARVVEEAREDAERIAEQLRAQADAEAE   96 (445)
T ss_pred             HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555566 456676667777777777776666666666665555555433321       2223333333444555555


Q ss_pred             HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHH-HHHHHHHHHHHhhhch
Q 027050           78 RLY-ENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEV-AATMQEFSKEMTKAGV  141 (229)
Q Consensus        78 ~l~-~~~a~l~sv~~ql~ta~~~~~~~~am~~s~~~M~~~n~~m~~~~l-~~~M~ef~~e~~~~~~  141 (229)
                      ++. ..+.++..-..+........-..-++..+.++++   +.++-+.. .+++++|=.++..+.-
T Consensus        97 ~i~~~a~~~Ie~ek~~a~~elr~ei~~lAv~~A~kil~---~~l~d~~~~~~lId~~i~~l~~~~~  159 (445)
T PRK13428         97 RIKVQGARQVQLLRAQLTRQLRLELGHESVRQAGELVR---NHVADPAQQSATVDRFLDELDAMAP  159 (445)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHcCCHHHHHHHHHHHHHHhhccCC
Confidence            533 5555555554444444444444455555544443   33422233 5777777777766433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	229
3frt_A	218	The Structure Of Human Chmp3 (Residues 8 - 222). Le		4e-37
3frv_A	152	Structure Of Human Chmp3 (Residues 1-150) Length =		2e-35
2gd5_A	179	Structural Basis For Budding By The Escrtiii Factor		1e-31

>pdb|3FRT|A Chain A, The Structure Of Human Chmp3 (Residues 8 - 222). Length = 218

Iteration: 1
 Score =  150 bits (380), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 76/176 (43%), Positives = 113/176 (64%), Gaps = 1/176 (0%)
Query: 11  KPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQELV 70
           KP P++L+ +W  K+R+E R ++RQIRDIQREE+ V++++KDAAK+        LA+E++
Sbjct: 6   KP-PKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKEMI 64
Query: 71  RSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQ 130
           RSRK V++LY +KA MNS+ M +   +A+ R  G L KS EVMK + +L+K PE+ ATM+
Sbjct: 65  RSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPEIQATMR 124
Query: 131 EFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKVLTAIAGETAAQLPEAV 186
           E SKEM KAG+IEE + D  ++  D           +D++L  I      + P  V
Sbjct: 125 ELSKEMMKAGIIEEMLEDTFESMDDQEEMEEEAEMEIDRILFEITAGALGKAPSKV 180

>pdb|3FRV|A Chain A, Structure Of Human Chmp3 (Residues 1-150) Length = 152

Iteration: 1
 Score =  145 bits (365), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 70/142 (49%), Positives = 103/142 (72%), Gaps = 1/142 (0%)
Query: 11  KPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQELV 70
           KP P++L+ +W  K+R+E R ++RQIRDIQREE+ V++++KDAAK+        LA+E++
Sbjct: 12  KP-PKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKEMI 70
Query: 71  RSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQ 130
           RSRK V++LY +KA MNS+ M +   +A+ R  G L KS EVMK + +L+K PE+ ATM+
Sbjct: 71  RSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPEIQATMR 130
Query: 131 EFSKEMTKAGVIEEFVNDAVDT 152
           E SKEM KAG+IEE + D  ++
Sbjct: 131 ELSKEMMKAGIIEEMLEDTFES 152

>pdb|2GD5|A Chain A, Structural Basis For Budding By The Escrtiii Factor Chmp3 Length = 179

Iteration: 1
 Score =  132 bits (333), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 72/173 (41%), Positives = 106/173 (61%), Gaps = 1/173 (0%)
Query: 11  KPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQELV 70
           KP P++L+ +W  K+R+E R ++RQIRDIQREE+ V++++KDAAK+        LA+E +
Sbjct: 6   KP-PKELVNEWSLKIRKEXRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKEXI 64
Query: 71  RSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQ 130
           RSRK V++LY +KA  NS+       +A+ R  G L KS EV K   +L+K PE+ AT +
Sbjct: 65  RSRKAVSKLYASKAHXNSVLXGXKNQLAVLRVAGSLQKSTEVXKAXQSLVKIPEIQATXR 124
Query: 131 EFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKVLTAIAGETAAQLP 183
           E SKE  KAG+IEE + D  ++  D           +D++L  I      + P
Sbjct: 125 ELSKEXXKAGIIEEMLEDTFESMDDQEEXEEEAEXEIDRILFEITAGALGKAP 177

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	229
3frt_A	218	Charged multivesicular BODY protein 3; ESCRT, ESCR	7e-37
2gd5_A	179	Charged multivesicular BODY protein 3; CHMP3, ESCR	2e-36
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04

>3frt_A Charged multivesicular BODY protein 3; ESCRT, ESCRT-111, CHMP, IST1, coiled coil, cytoplasm, lipoprotein, membrane, myristate, phosphoprotein; 4.00A {Homo sapiens} Length = 218

 Score =  127 bits (321), Expect = 7e-37
 Identities = 91/220 (41%), Positives = 142/220 (64%), Gaps = 5/220 (2%)

Query: 10  PKPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQEL 69
            +  P++L+ +W  K+R+E R ++RQIRDIQREE+ V++++KDAAK+        LA+E+
Sbjct: 4   QEKPPKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKEM 63

Query: 70  VRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATM 129
           +RSRK V++LY +KA MNS+ M +   +A+ R  G L KS EVMK + +L+K PE+ ATM
Sbjct: 64  IRSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPEIQATM 123

Query: 130 QEFSKEMTKAGVIEEFVNDAVDTALDSEDIEEEIEEEVDKVLTAIAGETAAQLPEAVRKE 189
           +E SKEM KAG+IEE + D  ++  D E++EEE E E+D++L  I      + P  V   
Sbjct: 124 RELSKEMMKAGIIEEMLEDTFESMDDQEEMEEEAEMEIDRILFEITAGALGKAPSKVTDA 183

Query: 190 RVKQSAQTSRAAQEEDAVAEGIDDEKELEEIRARLAKVRS 229
             +     + AA E++      ++E+ LE +++RLA +RS
Sbjct: 184 LPEPEPPGAMAASEDEE-----EEEEALEAMQSRLATLRS 218

>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A Length = 179

 Score =  125 bits (315), Expect = 2e-36
 Identities = 79/174 (45%), Positives = 119/174 (68%)

Query: 10  PKPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQEL 69
            +  P++L+ +W  K+R+E R ++RQIRDIQREE+ V++++KDAAK+        LA+E+
Sbjct: 4   AEKPPKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKEM 63

Query: 70  VRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATM 129
           +RSRK V++LY +KA MNS+ M +   +A+ R  G L KS EVMK + +L+K PE+ ATM
Sbjct: 64  IRSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPEIQATM 123

Query: 130 QEFSKEMTKAGVIEEFVNDAVDTALDSEDIEEEIEEEVDKVLTAIAGETAAQLP 183
           +E SKEM KAG+IEE + D  ++  D E++EEE E E+D++L  I      + P
Sbjct: 124 RELSKEMMKAGIIEEMLEDTFESMDDQEEMEEEAEMEIDRILFEITAGALGKAP 177

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.1 bits (103), Expect = 2e-05
 Identities = 33/255 (12%), Positives = 70/255 (27%), Gaps = 95/255 (37%)

Query: 11  KPNPQQLLRDWQRKLRQ---------ECRNIERQIRDIQ--------REEK--NVQKAIK 51
           + N + L+   + + RQ         E R+  R   D Q        R +    +++A+ 
Sbjct: 88  RINYKFLMSPIKTEQRQPSMMTRMYIEQRD--RLYNDNQVFAKYNVSRLQPYLKLRQALL 145

Query: 52  DAAKRNDLS------SAKS-LAQELVRSRKTVNRLYENKAQMNSISMH-LGESVAIARTV 103
           +     ++       S K+ +A ++  S K   ++           +  L         +
Sbjct: 146 ELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFK--------IFWL--------NL 189

Query: 104 GHLNKSAEVMKLVNNL-------------------MKAPEVAATMQEF--SKEMTKA--- 139
            + N    V++++  L                   ++   + A ++    SK        
Sbjct: 190 KNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV 249

Query: 140 -------GVIEEF--------------VNDAVDTALDSEDIEEEI-----EEEVDKVLTA 173
                       F              V D +  A  +    +        +EV  +L  
Sbjct: 250 LLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK 309

Query: 174 IAGETAAQLPEAVRK 188
                   LP  V  
Sbjct: 310 YLDCRPQDLPREVLT 324

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.0 bits (95), Expect = 2e-04
 Identities = 31/196 (15%), Positives = 67/196 (34%), Gaps = 45/196 (22%)

Query: 2   EKVMNMIKPKPNPQQL--LRD-WQRKLRQ----ECRNI----ERQIRDIQREEKNVQKAI 50
            ++  ++K KP    L  L +    K        C+ +     +Q+ D          ++
Sbjct: 232 AELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISL 291

Query: 51  KDAAKRNDLSSAKSL--------AQELVRSRKTVNRLYENKAQMNSISMHLGESV--AIA 100
              +        KSL         Q+L R   T N           +S+ + ES+   +A
Sbjct: 292 DHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPR--------RLSI-IAESIRDGLA 342

Query: 101 R--TVGHLN--KSAEVMKL-VNNLMKAPEVAATMQEFSKEMTKAGVIEEFVN--DAVDTA 153
                 H+N  K   +++  +N L +  E     ++    +    V     +    + + 
Sbjct: 343 TWDNWKHVNCDKLTTIIESSLNVL-EPAE----YRKMFDRL---SVFPPSAHIPTILLSL 394

Query: 154 LDSEDIEEEIEEEVDK 169
           +  + I+ ++   V+K
Sbjct: 395 IWFDVIKSDVMVVVNK 410

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	229
3frt_A	218	Charged multivesicular BODY protein 3; ESCRT, ESCR	100.0
2gd5_A	179	Charged multivesicular BODY protein 3; CHMP3, ESCR	100.0
3eab_G	50	CHMP1B; spastin, MIT, ESCRT, alternative splicing,	98.85
3frt_A	218	Charged multivesicular BODY protein 3; ESCRT, ESCR	98.72
3um3_B	104	Charged multivesicular BODY protein 4B; alpha-heli	98.08
2gd5_A	179	Charged multivesicular BODY protein 3; CHMP3, ESCR	97.84
2xze_Q	40	Charged multivesicular BODY protein 3; hydrolase-p	97.01
2v6x_B	54	DOA4-independent degradation protein 4; protein tr	96.88
4abm_A	79	Charged multivesicular BODY protein 4B; cell cycle	96.33
3ggz_E	29	Vacuolar protein-sorting-associated protein 46; no	86.62
3frr_A	191	Uncharacterized protein KIAA0174; ESCRT, ESCRT-III	85.58
3twe_A	27	Alpha4H; unknown function; HET: PGE; 1.36A {Synthe	83.32
2luh_B	59	Vacuolar protein-sorting-associated protein 60; VT	82.7

>3frt_A Charged multivesicular BODY protein 3; ESCRT, ESCRT-111, CHMP, IST1, coiled coil, cytoplasm, lipoprotein, membrane, myristate, phosphoprotein; 4.00A {Homo sapiens}

Probab=100.00  E-value=7.9e-56  Score=376.50  Aligned_cols=214  Identities=42%  Similarity=0.657  Sum_probs=140.5

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027050           10 PKPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQELVRSRKTVNRLYENKAQMNSI   89 (229)
Q Consensus        10 ~~~~~ke~lr~~~~~Lr~~~R~LdRe~~~le~~ekkl~~~Ik~aakkg~~~~akilAk~lvr~rk~~~~l~~~~a~l~sv   89 (229)
                      +++||+|++|+|++.||++.|+|||++++|+++|++++.+||++||+||+++|||||++|||+|+++.+||+++++|++|
T Consensus         4 ~~~~p~e~~r~~~r~Lr~~~R~LdR~~~kle~eEkk~~~~IKkaakkg~~~~arilAkelVR~Rk~~~rl~~~kaqL~sV   83 (218)
T 3frt_A            4 QEKPPKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKEMIRSRKAVSKLYASKAHMNSV   83 (218)
T ss_dssp             ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHhhhchHHHHHhhHhhhccCccchHHHHHHHHHH
Q 027050           90 SMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSEDIEEEIEEEVDK  169 (229)
Q Consensus        90 ~~ql~ta~~~~~~~~am~~s~~~M~~~n~~m~~~~l~~~M~ef~~e~~~~~~~~e~m~d~~d~~~d~~~~eee~d~~v~q  169 (229)
                      +++|++++++.+++++|++++++|+.||++||+|+|+.||++|++||+++|+++|||+|+|+++++++++++++|++|++
T Consensus        84 ~~rlqt~~s~~~v~~sM~~st~~M~~~n~~m~l~~i~~tM~efekE~~k~~i~eEmm~Da~d~~~~~~~~eee~d~~v~k  163 (218)
T 3frt_A           84 LMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLEDTFESMDDQEEMEEEAEMEIDR  163 (218)
T ss_dssp             HHHHHHHHHCC----CCCCCHHHHHHHHHSTTSHHHHHHHHHHHHHHHHHSCC----------------CTTSTTTHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcccccCCchHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999988888889999999999


Q ss_pred             HHHHhcchhhhhCchhhhhhhhhhhhhhhhhhhhhhhhh-ccCCChhhHHHHHHHHHhhhC
Q 027050          170 VLTAIAGETAAQLPEAVRKERVKQSAQTSRAAQEEDAVA-EGIDDEKELEEIRARLAKVRS  229 (229)
Q Consensus       170 vldEig~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ddl~~RL~aLr~  229 (229)
                      ||+|||.+-   |+.+|.+.....|.+.   ++...+.. +++++++++++|++||++|||
T Consensus       164 VldEi~~~~---l~~~p~~~~~~~~~~~---~~~~~~~~~~~e~~~~~~~~m~~rl~al~s  218 (218)
T 3frt_A          164 ILFEITAGA---LGKAPSKVTDALPEPE---PPGAMAASEDEEEEEEALEAMQSRLATLRS  218 (218)
T ss_dssp             HHHTC--------------------------------------------------------
T ss_pred             HHHHHhHhH---hhcCCCCCCCCCCCcc---ccccccccccchhhHHHHHHHHHHHHHhcC
Confidence            999999654   5555432111122211   00001111 123345678999999999997

>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A

Probab=100.00  E-value=5.8e-47  Score=314.23  Aligned_cols=177  Identities=45%  Similarity=0.726  Sum_probs=141.6

Q ss_pred             hhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027050            7 MIKPKPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQELVRSRKTVNRLYENKAQM   86 (229)
Q Consensus         7 ~f~~~~~~ke~lr~~~~~Lr~~~R~LdRe~~~le~~ekkl~~~Ik~aakkg~~~~akilAk~lvr~rk~~~~l~~~~a~l   86 (229)
                      +|+ +|||+|++|+|++.|++++|+|||++.+|+++|++++.+||+++++|+.++||+||+++||.|+++.+|++++++|
T Consensus         2 ~~~-~~~p~e~lr~~~~~L~~~~r~Ldr~~~kle~~ekk~~~~Ikka~k~g~~~~aki~Ak~lvr~rk~~~~l~~~~a~l   80 (179)
T 2gd5_A            2 AMA-EKPPKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKEMIRSRKAVSKLYASKAHM   80 (179)
T ss_dssp             -------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCC-CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            565 7899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHhhhchHHHHHhhHhhhccCccchHHHHHHH
Q 027050           87 NSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSEDIEEEIEEE  166 (229)
Q Consensus        87 ~sv~~ql~ta~~~~~~~~am~~s~~~M~~~n~~m~~~~l~~~M~ef~~e~~~~~~~~e~m~d~~d~~~d~~~~eee~d~~  166 (229)
                      ++|+++|+++.++..++++|+.++++|+.+|++||+|+|+++|++|++|++++|+++|||+|+|++++++++++++++++
T Consensus        81 ~~v~~~lqt~~~~~~v~~am~~~~~~M~~~n~~m~l~~i~~~M~e~~~e~~~~~~~~E~m~d~~~~~~~~~~~eee~d~~  160 (179)
T 2gd5_A           81 NSVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLEDTFESMDDQEEMEEEAEME  160 (179)
T ss_dssp             HHHHHHHHHHHHHHHHTSSCCCCSHHHHTTTSSTTSSSCCHHHHHHHHHHHHHTSCC-------------------CTTH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCcHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999988888889999999


Q ss_pred             HHHHHHHhcchhhhhCchhhh
Q 027050          167 VDKVLTAIAGETAAQLPEAVR  187 (229)
Q Consensus       167 v~qvldEig~~~~~~l~~~p~  187 (229)
                      |++||+|+|+   ++||.+|.
T Consensus       161 v~kVl~E~~~---~~l~~~P~  178 (179)
T 2gd5_A          161 IDRILFEITA---GALGKAPS  178 (179)
T ss_dssp             HHHTTCCC-------------
T ss_pred             HHHHHHHhhH---hhcccCCC
Confidence            9999999996   46787774

>3eab_G CHMP1B; spastin, MIT, ESCRT, alternative splicing, ATP- binding, cytoplasm, disease mutation, hereditary spastic paraplegia, nucleotide-binding; 2.50A {Homo sapiens}

Probab=98.85  E-value=7.5e-10  Score=72.67  Aligned_cols=49  Identities=20%  Similarity=0.350  Sum_probs=28.2

Q ss_pred             HHHHHHHHHHHhcchhhhhCchhhhhhhhhhhhhhhhhhhhhhhhhccCCChhhHHHHHHHHHhhhC
Q 027050          163 IEEEVDKVLTAIAGETAAQLPEAVRKERVKQSAQTSRAAQEEDAVAEGIDDEKELEEIRARLAKVRS  229 (229)
Q Consensus       163 ~d~~v~qvldEig~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ddl~~RL~aLr~  229 (229)
                      +|++++||+||+|++++..||.+|.+ +++  .     +    + .     ..+.|+|.+||++||+
T Consensus         2 Vd~Lm~qVaDE~Glel~~~L~~~~~~-~~~--~-----~----~-~-----~~~eD~L~~RLaaLR~   50 (50)
T 3eab_G            2 VDMLLQEMADEAGLDLNMELPQGQTG-SVG--T-----S----V-A-----SAEQDELSQRLARLRD   50 (50)
T ss_dssp             CCHHHHHHHHHTTCC---------CH-HHH--H-----H----H-H-----HHHHHHHHHHHHTTC-
T ss_pred             HHHHHHHHHHHhCchHHhhccccccc-ccC--C-----C----C-C-----cccHHHHHHHHHHHhC
Confidence            57899999999999999999998865 111  0     0    1 1     1234899999999996

>3frt_A Charged multivesicular BODY protein 3; ESCRT, ESCRT-111, CHMP, IST1, coiled coil, cytoplasm, lipoprotein, membrane, myristate, phosphoprotein; 4.00A {Homo sapiens}

Probab=98.72  E-value=1.7e-08  Score=85.39  Aligned_cols=152  Identities=14%  Similarity=0.203  Sum_probs=93.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH--HHHHHHHHHHHH---HHHHHHHHHHHHHH
Q 027050           20 DWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQE--LVRSRKTVNRLY---ENKAQMNSISMHLG   94 (229)
Q Consensus        20 ~~~~~Lr~~~R~LdRe~~~le~~ekkl~~~Ik~aakkg~~~~akilAk~--lvr~rk~~~~l~---~~~a~l~sv~~ql~   94 (229)
                      ..+..+|...|.|-+.++.|+|+-.+++.+-|+.     ....|..||.  .--.|-+...|.   +...+|....+||+
T Consensus         7 ~p~e~~r~~~r~Lr~~~R~LdR~~~kle~eEkk~-----~~~IKkaakkg~~~~arilAkelVR~Rk~~~rl~~~kaqL~   81 (218)
T 3frt_A            7 PPKELVNEWSLKIRKEMRVVDRQIRDIQREEEKV-----KRSVKDAAKKGQKDVCIVLAKEMIRSRKAVSKLYASKAHMN   81 (218)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566788888899999999999999998887765     2334444443  222344444444   55566888889999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHH--HHHHH---HHhhhchHHHHHhhHhhhccCccchHHHHHHHHHH
Q 027050           95 ESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATM--QEFSK---EMTKAGVIEEFVNDAVDTALDSEDIEEEIEEEVDK  169 (229)
Q Consensus        95 ta~~~~~~~~am~~s~~~M~~~n~~m~~~~l~~~M--~ef~~---e~~~~~~~~e~m~d~~d~~~d~~~~eee~d~~v~q  169 (229)
                      +...-.....++.+++.+|+.+.+.|  ..+...|  ++++.   +|++--+.-+++++.|++++|+.+..++.+++++.
T Consensus        82 sV~~rlqt~~s~~~v~~sM~~st~~M--~~~n~~m~l~~i~~tM~efekE~~k~~i~eEmm~Da~d~~~~~~~~eee~d~  159 (218)
T 3frt_A           82 SVLMGMKNQLAVLRVAGSLQKSTEVM--KAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLEDTFESMDDQEEMEEEAEM  159 (218)
T ss_dssp             HHHHHHHHHHHCC----CCCCCHHHH--HHHHHSTTSHHHHHHHHHHHHHHHHHSCC----------------CTTSTTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHcCCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcccccCCchHHHHH
Confidence            99888888888888888899888884  3777666  55554   45555555567888999999876666667789999


Q ss_pred             HHHHhcchh
Q 027050          170 VLTAIAGET  178 (229)
Q Consensus       170 vldEig~~~  178 (229)
                      +++.+.-++
T Consensus       160 ~v~kVldEi  168 (218)
T 3frt_A          160 EIDRILFEI  168 (218)
T ss_dssp             HHHHHHHTC
T ss_pred             HHHHHHHHH
Confidence            999986665

>3um3_B Charged multivesicular BODY protein 4B; alpha-helix of C-terminal tail of CHMP4B, ESCRT-III, CHMPS, protein-transport protein complex, BROX; 3.80A {Homo sapiens}

Probab=98.08  E-value=6.4e-06  Score=61.82  Aligned_cols=70  Identities=21%  Similarity=0.257  Sum_probs=56.0

Q ss_pred             hCChHHHHHHHHHHHHHHhhhchHHHHHhhHhh--hccCccchHHHHHHHHHHHHHHhcchhh----hhCchhhhh
Q 027050          119 LMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVD--TALDSEDIEEEIEEEVDKVLTAIAGETA----AQLPEAVRK  188 (229)
Q Consensus       119 ~m~~~~l~~~M~ef~~e~~~~~~~~e~m~d~~d--~~~d~~~~eee~d~~v~qvldEig~~~~----~~l~~~p~~  188 (229)
                      .|++.+|.++|+++..+++..+.|+++++.+++  +.+|+++++.|.+++.+..+++--++++    ..||++|..
T Consensus         2 ~m~idkVe~lmDei~E~~e~~~EI~e~Ls~~~~~~~~~DEdELe~ELe~Le~e~l~~~~l~~~~~~~~~LP~vP~~   77 (104)
T 3um3_B            2 NMDIDKVDELMQDIADQQELAEEISTAISKPVGFGEEFDEDELMAELEELEQEELDKNLLEISGPETVPLPNVPSI   77 (104)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCC
Confidence            589999999999999999999999999999873  4567777777888888877777444333    358888875

>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A

Probab=97.84  E-value=2.3e-05  Score=64.09  Aligned_cols=146  Identities=14%  Similarity=0.228  Sum_probs=86.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH--HHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Q 027050           22 QRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQE--LVRSRKTVNRL---YENKAQMNSISMHLGES   96 (229)
Q Consensus        22 ~~~Lr~~~R~LdRe~~~le~~ekkl~~~Ik~aakkg~~~~akilAk~--lvr~rk~~~~l---~~~~a~l~sv~~ql~ta   96 (229)
                      +-.|+...|.|.+.++.|+++-.+++.+-|+..     ...|..|+.  .-..|-....+   -+...+|.....+|++.
T Consensus         9 ~e~lr~~~~~L~~~~r~Ldr~~~kle~~ekk~~-----~~Ikka~k~g~~~~aki~Ak~lvr~rk~~~~l~~~~a~l~~v   83 (179)
T 2gd5_A            9 KELVNEWSLKIRKEMRVVDRQIRDIQREEEKVK-----RSVKDAAKKGQKDVCIVLAKEMIRSRKAVSKLYASKAHMNSV   83 (179)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            346899999999999999999999998887752     223333332  11222233333   34566677888889998


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHH-----HHHHHHHhhhchHHHHHhhHhhhccCccchHHHHHHHHHHHH
Q 027050           97 VAIARTVGHLNKSAEVMKLVNNLMKAPEVAATM-----QEFSKEMTKAGVIEEFVNDAVDTALDSEDIEEEIEEEVDKVL  171 (229)
Q Consensus        97 ~~~~~~~~am~~s~~~M~~~n~~m~~~~l~~~M-----~ef~~e~~~~~~~~e~m~d~~d~~~d~~~~eee~d~~v~qvl  171 (229)
                      ....+...++..++.+|+.+++.|  ..+.+.|     ..+-.+|++.-..-++++++|++.+++..++++.+++++..+
T Consensus        84 ~~~lqt~~~~~~v~~am~~~~~~M--~~~n~~m~l~~i~~~M~e~~~e~~~~~~~~E~m~d~~~~~~~~~~~eee~d~~v  161 (179)
T 2gd5_A           84 LMGMKNQLAVLRVAGSLQKSTEVM--KAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLEDTFESMDDQEEMEEEAEMEI  161 (179)
T ss_dssp             HHHHHHHHHHHHHTSSCCCCSHHH--HTTTSSTTSSSCCHHHHHHHHHHHHHTSCC-------------------CTTHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCcHHHHHHHH
Confidence            888888888888877787777763  3455444     445555555555556668899999887655566777888888


Q ss_pred             HHh
Q 027050          172 TAI  174 (229)
Q Consensus       172 dEi  174 (229)
                      +.+
T Consensus       162 ~kV  164 (179)
T 2gd5_A          162 DRI  164 (179)
T ss_dssp             HHT
T ss_pred             HHH
Confidence            776

>2xze_Q Charged multivesicular BODY protein 3; hydrolase-protein transport complex; 1.75A {Homo sapiens}

Probab=97.01  E-value=0.00014  Score=45.02  Aligned_cols=16  Identities=50%  Similarity=0.779  Sum_probs=13.9

Q ss_pred             hhhHHHHHHHHHhhhC
Q 027050          214 EKELEEIRARLAKVRS  229 (229)
Q Consensus       214 ~~~~ddl~~RL~aLr~  229 (229)
                      ++++..||.||+||||
T Consensus        25 Eedi~~MqsRLaALRS   40 (40)
T 2xze_Q           25 EEALEAMQSRLATLRS   40 (40)
T ss_dssp             HHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHhcC
Confidence            4567889999999997

>2v6x_B DOA4-independent degradation protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}

Probab=96.88  E-value=0.00026  Score=46.78  Aligned_cols=13  Identities=23%  Similarity=0.544  Sum_probs=11.6

Q ss_pred             HHHHHHHHHhhhC
Q 027050          217 LEEIRARLAKVRS  229 (229)
Q Consensus       217 ~ddl~~RL~aLr~  229 (229)
                      .||||+||++||.
T Consensus        40 ddDLQARLdsLRR   52 (54)
T 2v6x_B           40 DDDLQARLNTLKK   52 (54)
T ss_dssp             CHHHHHHHHHHHC
T ss_pred             hHHHHHHHHHhcc
Confidence            4899999999994

>4abm_A Charged multivesicular BODY protein 4B; cell cycle, protein transport, HIV-1; 1.80A {Homo sapiens}

Probab=96.33  E-value=0.056  Score=38.23  Aligned_cols=33  Identities=15%  Similarity=0.269  Sum_probs=27.9

Q ss_pred             HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q 027050           63 KSLAQELVRSRKTVNR-LYENKAQMNSISMHLGE   95 (229)
Q Consensus        63 kilAk~lvr~rk~~~~-l~~~~a~l~sv~~ql~t   95 (229)
                      |.-|..+++.+|..+. +.++.+++.+++.++.+
T Consensus        44 K~~Al~aLkrKK~~E~qL~q~~~ql~~LE~q~~~   77 (79)
T 4abm_A           44 KRAALQALKRKKRYEKQLAQIDGTLSTIEFQREA   77 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Confidence            5689999999999877 66999999999988765

>3ggz_E Vacuolar protein-sorting-associated protein 46; novel MIM binding mode, phosphoprotein, coiled coil, endosome, membrane; 3.80A {Saccharomyces cerevisiae}

Probab=86.62  E-value=0.35  Score=27.46  Aligned_cols=15  Identities=20%  Similarity=0.448  Sum_probs=12.3

Q ss_pred             hhHHHHHHHHHhhhC
Q 027050          215 KELEEIRARLAKVRS  229 (229)
Q Consensus       215 ~~~ddl~~RL~aLr~  229 (229)
                      +..|.|-+||.|||.
T Consensus        15 ekEDkLAqRLRALR~   29 (29)
T 3ggz_E           15 EKEDKLAQRLRALRG   29 (29)
T ss_pred             hhhHHHHHHHHHHcC
Confidence            344899999999994

>3frr_A Uncharacterized protein KIAA0174; ESCRT, ESCRT-III, CHMP, IST1, alternative splicing, phosphoprotein, protein binding; 1.80A {Homo sapiens} PDB: 3frs_A

Probab=85.58  E-value=13  Score=30.16  Aligned_cols=125  Identities=13%  Similarity=0.117  Sum_probs=89.2

Q ss_pred             hhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027050            7 MIKPKPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQELVRSRKTVNRLYENKAQM   86 (229)
Q Consensus         7 ~f~~~~~~ke~lr~~~~~Lr~~~R~LdRe~~~le~~ekkl~~~Ik~aakkg~~~~akilAk~lvr~rk~~~~l~~~~a~l   86 (229)
                      +||++.++    -+.+..|+-.+..|.=..+|-...-++...+|-+..+.|..+.||+-+.++|+--+...=|.-+.-..
T Consensus         3 mf~~~~~~----~K~K~~Lklai~Rl~ll~~Kk~~~~k~~RrdIA~LL~~gk~~~AriRvE~iI~ed~~ie~~EilElyC   78 (191)
T 3frr_A            3 MLGSGFKA----ERLRVNLRLVINRLKLLEKKKTELAQKARKEIADYLAAGKDERARIRVEHIIREDYLVEAMEILELYC   78 (191)
T ss_dssp             -CCCCCCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCCCCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            57766553    35566666666666666777777888899999999999999999999999999999998888888888


Q ss_pred             HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhh-CChHHHHHHH----HHHHHHHhh
Q 027050           87 NSISMHLGESVAIA----RTVGHLNKSAEVMKLVNNL-MKAPEVAATM----QEFSKEMTK  138 (229)
Q Consensus        87 ~sv~~ql~ta~~~~----~~~~am~~s~~~M~~~n~~-m~~~~l~~~M----~ef~~e~~~  138 (229)
                      +-+..++.......    .+..++.+.   +=...+. -++|++..+=    ..|-++|..
T Consensus        79 elL~~R~~li~~~k~cp~~l~EAvssl---IyAa~R~~~elpEL~~ir~~l~~KyGkeF~~  136 (191)
T 3frr_A           79 DLLLARFGLIQSMKELDSGLAESVSTL---IWAAPRLQSEVAELKIVADQLCAKYSKEYGK  136 (191)
T ss_dssp             HHHHHTHHHHHSCSSCCGGGHHHHHHH---HHHHHHHTTTCHHHHHHHHHHHHHHCHHHHH
T ss_pred             HHHHHHHHHHhccCCCCHHHHHHHHHH---HHhhhcccccChHHHHHHHHHHHHhCHHHHH
Confidence            88877766554332    333344333   6666665 6888886543    455555543

>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*

Probab=83.32  E-value=0.67  Score=25.11  Aligned_cols=14  Identities=57%  Similarity=0.933  Sum_probs=11.9

Q ss_pred             hhHHHHHHHHHhhh
Q 027050          215 KELEEIRARLAKVR  228 (229)
Q Consensus       215 ~~~ddl~~RL~aLr  228 (229)
                      .+++|||+||..||
T Consensus         8 keledlqerlrklr   21 (27)
T 3twe_A            8 KELEDLQERLRKLR   21 (27)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            35789999999987

>2luh_B Vacuolar protein-sorting-associated protein 60; VTA1, VPS60, ESCRT, MVB, novel MIT recognition mode, protein transport, endocytosis; NMR {Saccharomyces cerevisiae}

Probab=82.70  E-value=0.94  Score=30.05  Aligned_cols=33  Identities=6%  Similarity=0.153  Sum_probs=28.6

Q ss_pred             CChHHHHHHHHHHHHHHhhhchHHHHHhhHhhh
Q 027050          120 MKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDT  152 (229)
Q Consensus       120 m~~~~l~~~M~ef~~e~~~~~~~~e~m~d~~d~  152 (229)
                      +|+.+|..++.++.--++..+.++|.++.+.+.
T Consensus         1 inIDkIedlqDem~Dl~e~~nEIQE~L~rsy~~   33 (59)
T 2luh_B            1 INIDKLQDMQDEMLDLIEQGDELQEVLAMNNNS   33 (59)
T ss_dssp             CHHHHHHSCSSCHHHHHHHHHHHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence            467888899999999999999999999988653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00