Citrus Sinensis ID: 027066

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------23
Protein Sequence
MAMSVSIVAVVTALHLIAFVFAVGAERRRSTVLFTHSILYIHKFFENYLSFSGSLIFWVFLCLKAKVVPDQYDEMTYCVYSTDASTVYGLSAFGLLLISQAVVNGVTRCLCFGKGLVTGTSSTTWAVFFFIVSWVSFLGAEACLLAGSARNAYHTKYRKIFGGGDLSCATLRKGVFAAGAALTLLSLAGSILYYWAHTRADTGGWEKHRNEGLGMAMQQQQPGNDFEKA
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccccccHHHHHHHHHccEEcccccccccEEEEccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEcccccccEEEccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
MAMSVSIVAVVTALHLIAFVFAVgaerrrstvLFTHSILYIHKFFENYLSFSGSLIFWVFLCLKakvvpdqydemtycvystdastvyGLSAFGLLLISQAVVNGVTRCLcfgkglvtgtsstTWAVFFFIVSWVSFLGAEACLLAGSARNAYHTKYRkifgggdlscATLRKGVFAAGAALTLLSLAGSILYYWAHtradtggwekhrneglgmamqqqqpgndfeka
Flexible Loop (DISEMBL)
MAMSVSIVAVVTALHLIAFVFAVGAERRRSTVLFTHSILYIHKFFENYLSFSGSLIFWVFLCLKAKVVPDQYDEMTYCVYSTDASTVYGLSAFGLLLISQAVVNGVTRCLCFGKGLVTGTSSTTWAVFFFIVSWVSFLGAEACLLAGSARNAYHTKYRKIFGGGDLSCATLRKGVFAAGAALTLLSLAGSILYYWAHTRADTGGWEKHRNEGLGmamqqqqpgndfeka
Low Complexity Region (SEG)
MAMSVSIVAVVTALHLIAFVFAVGAERRRSTVLFTHSILYIHKFFENYLSFSGSLIFWVFLCLKAKVVPDQYDEMTYCVYSTDASTVYGLSAFGLLLISQAVVNGVTRCLCFGKGLVTGTSSTTWAVFFFIVSWVSFLGAEACLLAGSARNAYHTKYRKIFGGGDLSCATLRKGVFaagaaltllslagsilYYWAHTRADTGGWEKHRNEGLGMAMQQQQPGNDFEKA
Disordered region (IsUnstruct)
****VSIVAVVTALHLIAFVFAVGAERRRSTVLFTHSILYIHKFFENYLSFSGSLIFWVFLCLKAKVVPDQYDEMTYCVYSTDASTVYGLSAFGLLLISQAVVNGVTRCLCFGKGLVTGTSSTTWAVFFFIVSWVSFLGAEACLLAGSARNAYHTKYRKIFGGGDLSCATLRKGVFAAGAALTLLSLAGSILYYWAHTRADTGGW************************
Disordered Region (DISOPRED)
***SVSIVAVVTALHLIAFVFAVGAERRRS******SILYIHKFFENYLSFSGSLIFWVFLCLKAKVVPDQYDEMTYCVYSTDASTVYGLSAFGLLLISQAVVNGVTRCLCFGKGL*TGTSSTTWAVFFFIVSWVSFLGAEACLLAGSARNAYHTKYRKIFGGGDLSCATLRKGVFAAGAALTLLSLAGSILYYWA*********************************
Disordered Region (DISEMBL)
MAMSVSIVAVVTALHLIAFVFAVGAERRRSTVLFTHSILYIHKFFENYLSFSGSLIFWVFLCLKAKVVPDQYDEMTYCVYSTDASTVYGLSAFGLLLISQAVVNGVTRCLCFGKGLVTGTSSTTWAVFFFIVSWVSFLGAEACLLAGSARNAYHTKYRKIFGGGDLSCATLRKGVFAAGAALTLLSLAGSILYYWAHTRADTGGWEKHRNEGLGMAM************
Disordered Region (DISPRO)
*AMSVSIVAVVTALHLIAFVFAVGAERRRSTVLFTHSILYIHKFFENYLSFSGSLIFWVFLCLKAKVVPDQYDEMTYCVYSTDASTVYGLSAFGLLLISQAVVNGVTRCLCFGKGLVTGTSSTTWAVFFFIVSWVSFLGAEACLLAGSARNAYHTKYRKIFGGGDLSCATLRKGVFAAGAALTLLSLAGSILYYWAHTRAD****************************
Transmembrane Helix (TMHMM)
iiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAMSVSIVAVVTALHLIAFVFAVGAERRRSTVLFTHSILYIHKFFENYLSFSGSLIFWVFLCLKAKVVPDQYDEMTYCVYSTDASTVYGLSAFGLLLISQAVVNGVTRCLCFGKGLVTGTSSTTWAVFFFIVSWVSFLGAEACLLAGSARNAYHTKYRKIFGGGDLSCATLRKGVFAAGAALTLLSLAGSILYYWAHTRADTGGWEKHRNEGLGMAMQQQQPGNDFEKA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	229
224111620	199	predicted protein [Populus trichocarpa]	0.851	0.979	0.679	4e-81
224099405	184	predicted protein [Populus trichocarpa]	0.737	0.918	0.717	2e-74
225424071	193	PREDICTED: uncharacterized protein LOC10	0.838	0.994	0.692	2e-73
297838579	201	hypothetical protein ARALYDRAFT_475940 [	0.851	0.970	0.600	2e-71
18408976	201	uncharacterized protein [Arabidopsis tha	0.851	0.970	0.609	3e-71
388501328	193	unknown [Medicago truncatula]	0.834	0.989	0.604	1e-69
356575582	196	PREDICTED: uncharacterized protein LOC10	0.851	0.994	0.621	3e-67
356536286	195	PREDICTED: uncharacterized protein LOC10	0.851	1.0	0.624	4e-67
449458763	202	PREDICTED: uncharacterized protein LOC10	0.847	0.960	0.564	4e-59
371721838	200	unknown [Allium sativum]	0.834	0.955	0.519	3e-54

>gi|224111620|ref|XP_002315922.1| predicted protein [Populus trichocarpa] gi|222864962|gb|EEF02093.1| predicted protein [Populus trichocarpa]

 Score =  306 bits (785), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 157/231 (67%), Positives = 178/231 (77%), Gaps = 36/231 (15%)

Query: 1   MAMSVSIVAVVTALHLIAFVFAVGAERRRSTVLFTHSILYIHKFFENYLSFSGSLIFWVF 60
           MA+SVSI+AV+T+LHLIAFV A+GAERRRST                             
Sbjct: 1   MAVSVSILAVITSLHLIAFVLAIGAERRRST----------------------------- 31

Query: 61  LCLKAKVVPDQYDEMTYCVYSTDASTVYGLSAFGLLLISQAVVNGVTRCLCFGKGLVTGT 120
               AKVVPDQYDE TYCVY TDASTVYGL+AFGL+LISQ ++NGVTRCLCFGKGLVTG+
Sbjct: 32  ----AKVVPDQYDERTYCVYDTDASTVYGLAAFGLILISQMILNGVTRCLCFGKGLVTGS 87

Query: 121 SSTTWAVFFFIVSWVSFLGAEACLLAGSARNAYHTKYRKIFGGGDLSCATLRKGVFAAGA 180
            STT A+ FFI SW+SFLGAEACLLAGSARNAYHTKYR +F  G+LSCATLRKGVFAAGA
Sbjct: 88  CSTTCAIIFFIFSWLSFLGAEACLLAGSARNAYHTKYRGLFNQGELSCATLRKGVFAAGA 147

Query: 181 ALTLLSLAGSILYYWAHTRADTGGWEKHRNEGLGM---AMQQQQPGNDFEK 228
           ALTLLSL GSILYY+AH+RADTGGWEKH+N G+GM   +  QQQ  ++FEK
Sbjct: 148 ALTLLSLIGSILYYFAHSRADTGGWEKHQNVGVGMTSASYPQQQQTSEFEK 198

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224099405|ref|XP_002311471.1| predicted protein [Populus trichocarpa] gi|222851291|gb|EEE88838.1| predicted protein [Populus trichocarpa]

 Score =  284 bits (727), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 145/202 (71%), Positives = 156/202 (77%), Gaps = 33/202 (16%)

Query: 14  LHLIAFVFAVGAERRRSTVLFTHSILYIHKFFENYLSFSGSLIFWVFLCLKAKVVPDQYD 73
           LHL+AFV A+GAE RRST                                 AKVVPDQYD
Sbjct: 11  LHLVAFVLAIGAESRRST---------------------------------AKVVPDQYD 37

Query: 74  EMTYCVYSTDASTVYGLSAFGLLLISQAVVNGVTRCLCFGKGLVTGTSSTTWAVFFFIVS 133
           E TYCVY TDASTVYGL+AFGLLLISQ +VNGVTRCLCFGKGLVTG+ STT A+ FFIVS
Sbjct: 38  ESTYCVYDTDASTVYGLAAFGLLLISQMIVNGVTRCLCFGKGLVTGSCSTTCAIIFFIVS 97

Query: 134 WVSFLGAEACLLAGSARNAYHTKYRKIFGGGDLSCATLRKGVFAAGAALTLLSLAGSILY 193
           W+SFLGAEACLLAGSARNAYHTKYR  F  GDLSCATLR+GVFAAGAALTLLSL GSILY
Sbjct: 98  WLSFLGAEACLLAGSARNAYHTKYRGFFRQGDLSCATLRRGVFAAGAALTLLSLIGSILY 157

Query: 194 YWAHTRADTGGWEKHRNEGLGM 215
           YWAH+RADTGGWEKH+NEG+GM
Sbjct: 158 YWAHSRADTGGWEKHQNEGVGM 179

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225424071|ref|XP_002282799.1| PREDICTED: uncharacterized protein LOC100249231 [Vitis vinifera] gi|147792362|emb|CAN76984.1| hypothetical protein VITISV_027945 [Vitis vinifera] gi|297737776|emb|CBI26977.3| unnamed protein product [Vitis vinifera]

 Score =  281 bits (718), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 158/228 (69%), Positives = 177/228 (77%), Gaps = 36/228 (15%)

Query: 1   MAMSVSIVAVVTALHLIAFVFAVGAERRRSTVLFTHSILYIHKFFENYLSFSGSLIFWVF 60
           MA+SVS++A++ +LHLIAFV AVG+ERRRST                             
Sbjct: 1   MAVSVSLMAIIISLHLIAFVLAVGSERRRST----------------------------- 31

Query: 61  LCLKAKVVPDQYDEMTYCVYSTDASTVYGLSAFGLLLISQAVVNGVTRCLCFGKGLVTGT 120
               AKVVPD+YDE TYCVYSTDASTVYGL+AFGLLLISQ V+NGVT+CLCFG+GL+ G 
Sbjct: 32  ----AKVVPDKYDERTYCVYSTDASTVYGLTAFGLLLISQTVLNGVTKCLCFGRGLIGG- 86

Query: 121 SSTTWAVFFFIVSWVSFLGAEACLLAGSARNAYHTKYRKIFGGGDLSCATLRKGVFAAGA 180
            STT AVFFFI SWVSFLGAEACLLAGSA+NAYHTKYR +FGG DLSCATLRKGVFAAGA
Sbjct: 87  GSTTCAVFFFIFSWVSFLGAEACLLAGSAKNAYHTKYRGVFGGQDLSCATLRKGVFAAGA 146

Query: 181 ALTLLSLAGSILYYWAHTRADTGGWEKHRNEGLGMAMQQQQPGNDFEK 228
           AL+LLSL GSILYYWAH+RADTGGWEKHR+EGLGM  QQQ   N+F K
Sbjct: 147 ALSLLSLLGSILYYWAHSRADTGGWEKHRSEGLGMTQQQQN--NEFGK 192

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297838579|ref|XP_002887171.1| hypothetical protein ARALYDRAFT_475940 [Arabidopsis lyrata subsp. lyrata] gi|297333012|gb|EFH63430.1| hypothetical protein ARALYDRAFT_475940 [Arabidopsis lyrata subsp. lyrata]

 Score =  274 bits (700), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 140/233 (60%), Positives = 165/233 (70%), Gaps = 38/233 (16%)

Query: 1   MAMSVSIVAVVTALHLIAFVFAVGAERRRSTVLFTHSILYIHKFFENYLSFSGSLIFWVF 60
           MA+SVSI+ VVTALHL+AFVFA GAERRRST                             
Sbjct: 1   MAVSVSILTVVTALHLLAFVFAFGAERRRST----------------------------- 31

Query: 61  LCLKAKVVPDQYDEMTYCVYSTDASTVYGLSAFGLLLISQAVVNGVTRCLCFGKGLVTGT 120
               A  VPDQYDE T+C Y T+ASTVYG+SAFGLLL+SQA+VNGVT+CLCFGKGLVTGT
Sbjct: 32  ----AVPVPDQYDEKTFCKYGTEASTVYGMSAFGLLLVSQALVNGVTKCLCFGKGLVTGT 87

Query: 121 SSTTWAVFFFIVSWVSFLGAEACLLAGSARNAYHTKYRKIFGGGDLSCATLRKGVFAAGA 180
           S T WA+ FF+VSW+SFLGAEACLLAGSARNAYHTK   I+ G ++SCA L  GVFAAGA
Sbjct: 88  SYTVWAIVFFVVSWISFLGAEACLLAGSARNAYHTKSEGIYKGKEISCAVLPVGVFAAGA 147

Query: 181 ALTLLSLAGSILYYWAHTRADTGGWEKHRNEGLGMAMQ-----QQQPGNDFEK 228
           A TL+SL  +ILYY AH++ADTGGWEKH+N+G+ + M       +Q   +F K
Sbjct: 148 AFTLMSLIATILYYLAHSKADTGGWEKHQNDGINIGMTTPSDAPKQQNTEFNK 200

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18408976|ref|NP_564925.1| uncharacterized protein [Arabidopsis thaliana] gi|12325326|gb|AAG52607.1|AC016447_16 unknown protein; 73543-72303 [Arabidopsis thaliana] gi|14596227|gb|AAK68841.1| Unknown protein [Arabidopsis thaliana] gi|18377450|gb|AAL66891.1| unknown protein [Arabidopsis thaliana] gi|21592439|gb|AAM64390.1| unknown [Arabidopsis thaliana] gi|332196645|gb|AEE34766.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  273 bits (699), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 142/233 (60%), Positives = 163/233 (69%), Gaps = 38/233 (16%)

Query: 1   MAMSVSIVAVVTALHLIAFVFAVGAERRRSTVLFTHSILYIHKFFENYLSFSGSLIFWVF 60
           MA+SVSI+ VVTALHL+AFVFA GAERRRST                             
Sbjct: 1   MAVSVSILTVVTALHLLAFVFAFGAERRRST----------------------------- 31

Query: 61  LCLKAKVVPDQYDEMTYCVYSTDASTVYGLSAFGLLLISQAVVNGVTRCLCFGKGLVTGT 120
               A  VPDQYDE T C Y T+ASTVYG+SAFGLLL+SQAVVNGVT+CLCFGKGLVTGT
Sbjct: 32  ----AVPVPDQYDEKTICKYGTEASTVYGMSAFGLLLVSQAVVNGVTKCLCFGKGLVTGT 87

Query: 121 SSTTWAVFFFIVSWVSFLGAEACLLAGSARNAYHTKYRKIFGGGDLSCATLRKGVFAAGA 180
           S T WA+ FF+VSWVSFLGAEACLL GSARNAYHTK   I+ G +LSCA L  GVFAAGA
Sbjct: 88  SYTVWAIVFFVVSWVSFLGAEACLLGGSARNAYHTKSEGIYKGKELSCAVLPVGVFAAGA 147

Query: 181 ALTLLSLAGSILYYWAHTRADTGGWEKHRNEGLGMAMQ-----QQQPGNDFEK 228
           A TL+SL  +ILYY AH++ADTGGWEKH+N+G+ + M       +Q   +F K
Sbjct: 148 AFTLMSLIATILYYLAHSKADTGGWEKHQNDGINIGMTTPSDAPKQQNTEFNK 200

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388501328|gb|AFK38730.1| unknown [Medicago truncatula]

 Score =  268 bits (685), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 136/225 (60%), Positives = 161/225 (71%), Gaps = 34/225 (15%)

Query: 1   MAMSVSIVAVVTALHLIAFVFAVGAERRRSTVLFTHSILYIHKFFENYLSFSGSLIFWVF 60
           M +SV+I+ ++ +LHL+AFVFA+GAERRRS                              
Sbjct: 1   MGVSVTIIVLIISLHLLAFVFAIGAERRRS------------------------------ 30

Query: 61  LCLKAKVVPDQYDEMTYCVYSTDASTVYGLSAFGLLLISQAVVNGVTRCLCFGKGLVTGT 120
              +AKVVPD+YDE T+CVY+TDASTVYG++AF LLL+SQ V+N VTRCLC GKGL++G 
Sbjct: 31  ---EAKVVPDEYDERTFCVYTTDASTVYGVAAFSLLLLSQTVLNAVTRCLCCGKGLISG- 86

Query: 121 SSTTWAVFFFIVSWVSFLGAEACLLAGSARNAYHTKYRKIFGGGDLSCATLRKGVFAAGA 180
            STT AV FFI+SW  FL AEACLLAGSARNAYHTKYR  F   DLSCATLRKGVFAAGA
Sbjct: 87  CSTTCAVIFFILSWTGFLAAEACLLAGSARNAYHTKYRGNFVAHDLSCATLRKGVFAAGA 146

Query: 181 ALTLLSLAGSILYYWAHTRADTGGWEKHRNEGLGMAMQQQQPGND 225
           ALTL S+  SILYYWAH +ADTG WEKH+NEG+G+A     P +D
Sbjct: 147 ALTLFSMLASILYYWAHAKADTGFWEKHQNEGIGLATHNHGPESD 191

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356575582|ref|XP_003555918.1| PREDICTED: uncharacterized protein LOC100781729 [Glycine max]

 Score =  260 bits (664), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 143/230 (62%), Positives = 168/230 (73%), Gaps = 35/230 (15%)

Query: 1   MAMSVSIVAVVTALHLIAFVFAVGAERRRSTVLFTHSILYIHKFFENYLSFSGSLIFWVF 60
           MA+SV+I+ ++ ALHLIAFVFA+GAERRRS                              
Sbjct: 1   MAVSVTILVLIIALHLIAFVFAIGAERRRS------------------------------ 30

Query: 61  LCLKAKVVPDQYDEMTYCVYSTDASTVYGLSAFGLLLISQAVVNGVTRCLCFGKGLVTGT 120
              +AKVVPD+YD+ T+CVY+TDAS+VYGL+A  LLL+S  V+NGVTRCLC GKGLV+G 
Sbjct: 31  ---EAKVVPDEYDDRTFCVYTTDASSVYGLAAVALLLLSHTVLNGVTRCLCCGKGLVSGC 87

Query: 121 SSTTWAVFFFIVSWVSFLGAEACLLAGSARNAYHTKYRKIFGGGDLSCATLRKGVFAAGA 180
           S+T  AVF FI+SW+SFL AEACLLAGSARNAYHTKYR  F   DLSCATLRKGVFAAGA
Sbjct: 88  SATC-AVFSFILSWISFLAAEACLLAGSARNAYHTKYRGYFVKHDLSCATLRKGVFAAGA 146

Query: 181 ALTLLSLAGSILYYWAHTRADTGGWEKHRNEGLGMAMQ-QQQPGNDFEKA 229
           ALTLLS+  +ILYYWAH++ADTG WEKHRNEGLG+A Q     G D +KA
Sbjct: 147 ALTLLSMLTAILYYWAHSKADTGFWEKHRNEGLGLATQHHHHQGPDSDKA 196

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356536286|ref|XP_003536670.1| PREDICTED: uncharacterized protein LOC100808582 [Glycine max]

 Score =  259 bits (663), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 143/229 (62%), Positives = 166/229 (72%), Gaps = 34/229 (14%)

Query: 1   MAMSVSIVAVVTALHLIAFVFAVGAERRRSTVLFTHSILYIHKFFENYLSFSGSLIFWVF 60
           MA+SV+I+ ++ ALHLIAFVFAVGAERRRS                              
Sbjct: 1   MAVSVTILVLIIALHLIAFVFAVGAERRRS------------------------------ 30

Query: 61  LCLKAKVVPDQYDEMTYCVYSTDASTVYGLSAFGLLLISQAVVNGVTRCLCFGKGLVTGT 120
              +AKVVPD+YD+ T+C Y+TDASTVYGLSA  LLL+S  V+NGVTRCLC GKGLV+G 
Sbjct: 31  ---EAKVVPDEYDDQTFCHYTTDASTVYGLSAVALLLLSHTVLNGVTRCLCCGKGLVSGC 87

Query: 121 SSTTWAVFFFIVSWVSFLGAEACLLAGSARNAYHTKYRKIFGGGDLSCATLRKGVFAAGA 180
           S+T+ AV  FI+SW+SFL AEACLLAGSARNAYHTKYR  F   DLSCATLRKGVFAAGA
Sbjct: 88  SATS-AVISFILSWISFLAAEACLLAGSARNAYHTKYRGYFVNHDLSCATLRKGVFAAGA 146

Query: 181 ALTLLSLAGSILYYWAHTRADTGGWEKHRNEGLGMAMQQQQPGNDFEKA 229
           ALTLLS+  +ILYYWAH++ADTG WEKH NEGLG+A Q    G D +KA
Sbjct: 147 ALTLLSMLTAILYYWAHSKADTGFWEKHHNEGLGLATQHHHQGPDSDKA 195

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449458763|ref|XP_004147116.1| PREDICTED: uncharacterized protein LOC101217379 [Cucumis sativus] gi|449520990|ref|XP_004167515.1| PREDICTED: uncharacterized LOC101217379 [Cucumis sativus]

 Score =  233 bits (595), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 131/232 (56%), Positives = 153/232 (65%), Gaps = 38/232 (16%)

Query: 1   MAMSVSIVAVVTALHLIAFVFAVGAERRRSTVLFTHSILYIHKFFENYLSFSGSLIFWVF 60
           MA S+ ++ ++ +LHLIAFVFA+GAE RRST                             
Sbjct: 1   MATSLFVIVIIASLHLIAFVFAIGAEMRRST----------------------------- 31

Query: 61  LCLKAKVVPDQYDEMTYCVYSTDASTVYGLSAFGLLLISQAVVNGVTRCLCFGKGLVTGT 120
               A VVPD+YDE TYCVY +DASTVYGL AFGLLLISQ V+  VTRCLC GKGL +G 
Sbjct: 32  ----AAVVPDKYDETTYCVYDSDASTVYGLVAFGLLLISQTVLMVVTRCLCCGKGLRSG- 86

Query: 121 SSTTWAVFFFIVSWVSFLGAEACLLAGSARNAYHTKYRKIFGGGDLSCATLRKGVFAAGA 180
            ST  AV FFI+SW  FLGAE+ LLAGS RNAYHTKYR +    +LSCA LR+GVFAA A
Sbjct: 87  GSTVCAVIFFIISWHLFLGAESLLLAGSVRNAYHTKYRSVLPLNNLSCAMLRRGVFAAAA 146

Query: 181 ALTLLSLAGSILYYWAHTRADTGGWEKHRNEGLGMA----MQQQQPGNDFEK 228
           ALT LSL  SILYY  H+RADTGGW+KH+NEG+GM      QQ+Q     E+
Sbjct: 147 ALTFLSLVFSILYYSMHSRADTGGWQKHQNEGIGMGPSNLPQQEQHERRAEE 198

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|371721838|gb|AEX55242.1| unknown [Allium sativum]

 Score =  217 bits (553), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 119/229 (51%), Positives = 153/229 (66%), Gaps = 38/229 (16%)

Query: 1   MAMSVSIVAVVTALHLIAFVFAVGAERRRSTVLFTHSILYIHKFFENYLSFSGSLIFWVF 60
           M +S+ +VAV+ +LH++AFV A+GAE+RRST                             
Sbjct: 1   MGVSLPLVAVICSLHIMAFVLAIGAEKRRST----------------------------- 31

Query: 61  LCLKAKVVPDQYDEMTYCVYSTDASTVYGLSAFGLLLISQAVVNGVTRCLCFGKGLVTGT 120
                KV PD+YD+ TYCVY TDASTVYGLSAF L+L+SQ  VNGVTRCLCFGK ++   
Sbjct: 32  ----GKVQPDEYDDRTYCVYDTDASTVYGLSAFMLVLVSQVAVNGVTRCLCFGKRVLASG 87

Query: 121 SSTTWAVFFFIVSWVSFLGAEACLLAGSARNAYHTKYRKIFGGGDL-SCATLRKGVFAAG 179
           +S   AV FFI+SW+SF+ AEACL+AGSARNAYHTKY   +   DL SCATLRKGVFAA 
Sbjct: 88  ASKKCAVLFFIISWLSFIVAEACLIAGSARNAYHTKYVGYYAKKDLSSCATLRKGVFAAS 147

Query: 180 AALTLLSLAGSILYYWAHTRADTGGWEKHRNEG-LGM---AMQQQQPGN 224
           AA+ L+SL   + YY ++ +ADTGGW KH+N+  +GM   A ++++ GN
Sbjct: 148 AAMILISLISLLSYYHSYAKADTGGWVKHQNDSEVGMAEHAPEKREYGN 196

Source: Allium sativum

Species: Allium sativum

Genus: Allium

Family: Amaryllidaceae

Order: Asparagales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	229
TAIR|locus:2199332	201	AT1G68220 "AT1G68220" [Arabido	0.655	0.746	0.673	1.1e-64
TAIR|locus:2009922	188	AT1G13380 "AT1G13380" [Arabido	0.572	0.696	0.407	3.8e-31
TAIR|locus:505006194	180	AT1G61065 "AT1G61065" [Arabido	0.611	0.777	0.426	4.8e-31
TAIR|locus:505006522	173	AT4G27435 "AT4G27435" [Arabido	0.589	0.780	0.448	8.6e-30
TAIR|locus:2011556	175	AT1G52910 "AT1G52910" [Arabido	0.620	0.811	0.423	2.3e-29
TAIR|locus:2090156	175	AT3G15480 "AT3G15480" [Arabido	0.585	0.765	0.441	3.7e-29
TAIR|locus:2167200	209	AT5G17210 "AT5G17210" [Arabido	0.676	0.741	0.259	2.7e-09

TAIR|locus:2199332 AT1G68220 "AT1G68220" [Arabidopsis thaliana (taxid:3702)]

 Score = 552 (199.4 bits), Expect = 1.1e-64, Sum P(2) = 1.1e-64
 Identities = 101/150 (67%), Positives = 115/150 (76%)

Query:    68 VPDQYDEMTYCVYSTDASTVYGLSAFGLLLISQAVVNGVTRCLCFGKGLVTGTSSTTWAV 127
             VPDQYDE T C Y T+ASTVYG+SAFGLLL+SQAVVNGVT+CLCFGKGLVTGTS T WA+
Sbjct:    35 VPDQYDEKTICKYGTEASTVYGMSAFGLLLVSQAVVNGVTKCLCFGKGLVTGTSYTVWAI 94

Query:   128 FFFIVSWVSFLGAEACLLAGSARNAYHTKYRKIFGGGDLSCATLRKGVFXXXXXXXXXXX 187
              FF+VSWVSFLGAEACLL GSARNAYHTK   I+ G +LSCA L  GVF           
Sbjct:    95 VFFVVSWVSFLGAEACLLGGSARNAYHTKSEGIYKGKELSCAVLPVGVFAAGAAFTLMSL 154

Query:   188 XXXXXYYWAHTRADTGGWEKHRNEGLGMAM 217
                  YY AH++ADTGGWEKH+N+G+ + M
Sbjct:   155 IATILYYLAHSKADTGGWEKHQNDGINIGM 184

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2009922 AT1G13380 "AT1G13380" [Arabidopsis thaliana (taxid:3702)]

 Score = 291 (107.5 bits), Expect = 3.8e-31, Sum P(2) = 3.8e-31
 Identities = 55/135 (40%), Positives = 80/135 (59%)

Query:    66 KVVPDQYDEMTYCVYSTDASTVYGLSAFGLLLISQAVVNGVTRCLCFGKGLVTGTSSTTW 125
             K + D     T+CVY +D +T YG+ AF  LL S++++  VT+C+CFG+ L  G S   W
Sbjct:    36 KSIQDPITNTTFCVYDSDVATGYGVGAFLFLLSSESLLMSVTKCMCFGRPLAPG-SDRAW 94

Query:   126 AVFFFIVSWVSFLGAEACLLAGSARNAYHTKYRKIFGGGDLSCATLRKGVFXXXXXXXXX 185
             ++ +FI SW++FL AEAC++AG+ +NAYHTKY         SCA+LRKG+F         
Sbjct:    95 SIIYFISSWMTFLVAEACVIAGATKNAYHTKY---LSSQTFSCASLRKGIFIAGAVFIVA 151

Query:   186 XXXXXXXYYWAHTRA 200
                    YY   T++
Sbjct:   152 TMVLNVYYYMYFTKS 166

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:505006194 AT1G61065 "AT1G61065" [Arabidopsis thaliana (taxid:3702)]

 Score = 298 (110.0 bits), Expect = 4.8e-31, Sum P(2) = 4.8e-31
 Identities = 61/143 (42%), Positives = 84/143 (58%)

Query:    74 EMTYCVYSTDASTVYGLSAFGLLLISQAVVNGVTRCLCFGKGLVTGTSSTTWAVFFFIVS 133
             +++YCVY  D +T  G+ +F +LL SQ ++   +RCLC G+ L T + S +WA+F FI +
Sbjct:    39 DLSYCVYDKDIATGLGVGSFLVLLASQLLIMVASRCLCCGRAL-TPSGSRSWAIFLFITT 97

Query:   134 WVSFLGAEACLLAGSARNAYHTKYRKIFGGGDLSCATLRKGVFXXXXXXXXXXXXXXXXY 193
             WV F  A+ CLLAGS RNAYHTKYR  FG    SC +LRKGVF                Y
Sbjct:    98 WVFFFIAQVCLLAGSVRNAYHTKYRVYFGNTSPSCRSLRKGVFGAGAAFIVLTGIVSELY 157

Query:   194 YWAHTRADTGGWEKHRNEGLGMA 216
             Y   +RA    ++  R+ G+ M+
Sbjct:   158 YVTLSRAKD--FQPSRDPGIRMS 178

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:505006522 AT4G27435 "AT4G27435" [Arabidopsis thaliana (taxid:3702)]

 Score = 280 (103.6 bits), Expect = 8.6e-30, Sum P(2) = 8.6e-30
 Identities = 61/136 (44%), Positives = 75/136 (55%)

Query:    65 AKVVPDQYDEMTYCVYSTDASTVYGLSAFGLLLISQAVVNGVTRCLCFGKGLVTGTSSTT 124
             A+VV D   +  YCVY +D +T YG+ AF   + SQ ++  V+RC C GK L  G  S  
Sbjct:    31 ARVVQDTEVQYNYCVYDSDRATGYGVGAFLFSVASQILIMLVSRCFCCGKPLKPG-GSRA 89

Query:   125 WAVFFFIVSWVSFLGAEACLLAGSARNAYHTKYRKIFGGGDLSCATLRKGVFXXXXXXXX 184
              A+  FIVSW+ FL AE CLLAGS  NAYHTKYR +F      C TLRKGVF        
Sbjct:    90 LALILFIVSWMFFLIAEICLLAGSVENAYHTKYRTMFMDNPPDCQTLRKGVFAAGASFVF 149

Query:   185 XXXXXXXXYYWAHTRA 200
                     YY+ +  A
Sbjct:   150 FNAIVSQFYYFFYFSA 165

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

TAIR|locus:2011556 AT1G52910 "AT1G52910" [Arabidopsis thaliana (taxid:3702)]

 Score = 290 (107.1 bits), Expect = 2.3e-29, Sum P(2) = 2.3e-29
 Identities = 61/144 (42%), Positives = 77/144 (53%)

Query:    66 KVVPDQYDEMTYCVYSTDASTVYGLSAFGLLLISQAVVNGVTRCLCFGKGLVTGTSSTTW 125
             KVVPD   E  +C Y +D +T YG  AF LL ISQ ++   +RC C GK L  G  S   
Sbjct:    32 KVVPDGEKEFEHCEYGSDIATSYGAGAFVLLFISQVIIMVASRCFCCGKALKPG-GSRAC 90

Query:   126 AVFFFIVSWVSFLGAEACLLAGSARNAYHTKYRKIFG-GGDLSCATLRKGVFXXXXXXXX 184
              +  F++ WV FL AE CLLAGS RNAYHT YR+++      SC  +RKGVF        
Sbjct:    91 GIMLFLICWVFFLIAEVCLLAGSIRNAYHTTYRRMWNIENPPSCEVIRKGVFAAGASFAL 150

Query:   185 XXXXXXXXYYWAHTRADTGGWEKH 208
                     YY +++RA  G    H
Sbjct:   151 FTAIVSQFYYISYSRARDGYQTPH 174

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2090156 AT3G15480 "AT3G15480" [Arabidopsis thaliana (taxid:3702)]

 Score = 287 (106.1 bits), Expect = 3.7e-29, Sum P(2) = 3.7e-29
 Identities = 60/136 (44%), Positives = 76/136 (55%)

Query:    66 KVVPDQYDEMTYCVYSTDASTVYGLSAFGLLLISQAVVNGVTRCLCFGKGLVTGTSSTTW 125
             KV  D+  +  YCVY TD +T YG  AF LL +SQ ++   +RC C GK L  G  S   
Sbjct:    32 KVETDRDKQYDYCVYGTDIATSYGAGAFVLLFVSQVLIMAASRCFCCGKSLNPG-GSRAC 90

Query:   126 AVFFFIVSWVSFLGAEACLLAGSARNAYHTKYRKIFGGGDL-SCATLRKGVFXXXXXXXX 184
             A+  F++ WV FL AE CLLA S RNAYHT+YRK++   D  SC  +RKGVF        
Sbjct:    91 AIILFLICWVFFLIAEMCLLAASIRNAYHTQYRKMWKVEDPPSCEVIRKGVFAAGAAFTL 150

Query:   185 XXXXXXXXYYWAHTRA 200
                     YY  ++RA
Sbjct:   151 FTAIVSQFYYVCYSRA 166

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2167200 AT5G17210 "AT5G17210" [Arabidopsis thaliana (taxid:3702)]

 Score = 144 (55.7 bits), Expect = 2.7e-09, P = 2.7e-09
 Identities = 41/158 (25%), Positives = 70/158 (44%)

Query:    64 KAKVVPDQYDEMTYCVYSTDASTVYGLSAFGLLLISQAVVNGVTRCLCFGKGLVTGTSST 123
             +++V     D +T C Y    +   G ++   L+++Q +V+  + C C  KG     S+ 
Sbjct:    33 RSQVTVTVSDSITKCTYPRSPAFNLGFTSALFLMMAQIIVSVSSGCFCCRKGPAPSRSNW 92

Query:   124 TWAVFFFIVSWVSFLGAEACLLAGSARNAYHTKYRKIFGGGDLSCATLRKGVFXXXXXXX 183
               ++  F+VSW +F+ A   LL+G+A N  HT+  +    G   C  ++ GVF       
Sbjct:    93 IISLICFVVSWFTFVIAFLVLLSGAALNDEHTE--ESMNAGTYFCYIVKPGVFSTGAVLS 150

Query:   184 XXXXXXXXXYYWAHTRADTGGWEKHRNEGLGMAMQQQQ 221
                      YY   T ++         +G G+AM Q Q
Sbjct:   151 LVTIALGIVYYLCLT-SNKQIVAATTTQGTGIAMGQPQ 187


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.327   0.137   0.436    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      229       213   0.00084  112 3  11 22  0.41    32
                                                     31  0.49    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  7
  No. of states in DFA:  599 (64 KB)
  Total size of DFA:  186 KB (2107 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  16.57u 0.10s 16.67t   Elapsed:  00:00:00
  Total cpu time:  16.57u 0.10s 16.67t   Elapsed:  00:00:00
  Start:  Mon May 20 20:34:56 2013   End:  Mon May 20 20:34:56 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	229
pfam06749	97	pfam06749, DUF1218, Protein of unknown function (D	3e-27

>gnl|CDD|219160 pfam06749, DUF1218, Protein of unknown function (DUF1218)

 Score =  100 bits (250), Expect = 3e-27
 Identities = 47/98 (47%), Positives = 59/98 (60%), Gaps = 4/98 (4%)

Query: 92  AFGLLLISQAVVNGVTRCLCFGKGLVTG-TSSTTWAVFFFIVSWVSFLGAEACLLAGSAR 150
           A   L ++Q V N V  C C GK L          AV  F++SW++F+ A A LLAG+AR
Sbjct: 2   AAVFLAVAQVVGNVVGGCCCCGKALPPKSGRKRALAVVCFVLSWIAFVIAFALLLAGAAR 61

Query: 151 NAYHTKYRKIFGGGDLSCATLRKGVFAAGAALTLLSLA 188
           NAYHT+Y   F     SC TL+KGVFAAGA L+LL+  
Sbjct: 62  NAYHTRYNVHF---RPSCYTLKKGVFAAGAVLSLLAAL 96

This family contains hypothetical plant proteins of unknown function. Family members contain a number of conserved cysteine residues. Length = 97

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	229
PF06749	97	DUF1218: Protein of unknown function (DUF1218); In	99.96
PF05478	806	Prominin: Prominin; InterPro: IPR008795 The promin	87.11
cd07912	418	Tweety_N N-terminal domain of the protein encoded	82.12
PF05360	53	YiaAB: yiaA/B two helix domain; InterPro: IPR00802	81.31

>PF06749 DUF1218: Protein of unknown function (DUF1218); InterPro: IPR009606 This family contains hypothetical plant proteins of unknown function

Probab=99.96  E-value=7.6e-30  Score=198.11  Aligned_cols=96  Identities=45%  Similarity=0.688  Sum_probs=90.3

Q ss_pred             HHHHHHHHHHHHHHHHhccccccCCCCC-CCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccCCCCcccc
Q 027066           91 SAFGLLLISQAVVNGVTRCLCFGKGLVT-GTSSTTWAVFFFIVSWVSFLGAEACLLAGSARNAYHTKYRKIFGGGDLSCA  169 (229)
Q Consensus        91 ~A~v~Ll~aqvv~~~~~~C~Ccg~~~~~-~~~~r~~ai~~~v~SWi~F~IAe~~Ll~Ga~~N~~htk~~~~~~~~~~~C~  169 (229)
                      +|++||+++|+++|+++||.||+++.+| +..+|++++++|++||++|+|||++|++|+++|++|+|++.+.   +++|+
T Consensus         1 ~A~~~L~~aqvi~~~~~gC~cc~~~~~~~~~~~r~~a~~~~v~SWi~f~ia~~~ll~ga~~n~~~~~~~~~~---~~~C~   77 (97)
T PF06749_consen    1 AAAVFLLAAQVIANVAGGCLCCGKRVSPKSSRNRTLAVVFFVLSWIVFIIAEALLLAGASMNARHTKGNGWF---NPSCY   77 (97)
T ss_pred             CHHHHHHHHHHHHHHHhcceEeCCCCCCcccccchhhhhhHHHHHHHHHHHHHHHHHHHhcccccccccccc---CCccc
Confidence            4899999999999999999999998877 5689999999999999999999999999999999999998775   77999


Q ss_pred             cccccchhhhhHHHHHHHHH
Q 027066          170 TLRKGVFAAGAALTLLSLAG  189 (229)
Q Consensus       170 ~~r~GvFaagAvl~l~t~~~  189 (229)
                      ++|+|+|++||+|+|+|++|
T Consensus        78 ~~k~GvF~~~a~l~l~t~~f   97 (97)
T PF06749_consen   78 TVKKGVFAGGAVLSLVTALF   97 (97)
T ss_pred             ccCCceeeHhHHHHHHHHhC
Confidence            99999999999999999875

Family members contain a number of conserved cysteine residues.

>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology

Probab=87.11  E-value=1.8  Score=44.85  Aligned_cols=73  Identities=21%  Similarity=0.207  Sum_probs=44.2

Q ss_pred             eeecCCChhh-hhHHHHHHHHHHHHHHHHHHhcccccc-CC-CCCC-------CCchH--HH-HHHHHHHHHHHHHHHHH
Q 027066           77 YCVYSTDAST-VYGLSAFGLLLISQAVVNGVTRCLCFG-KG-LVTG-------TSSTT--WA-VFFFIVSWVSFLGAEAC  143 (229)
Q Consensus        77 ~C~Ypsd~A~-~lGv~A~v~Ll~aqvv~~~~~~C~Ccg-~~-~~~~-------~~~r~--~a-i~~~v~SWi~F~IAe~~  143 (229)
                      +-+|.++.-. +++++..++|++  ++....--|.||| ++ ..|+       .+.+.  .+ ++.|+++|+..+++.+.
T Consensus       406 ~~~y~~yR~~~~lil~~~llLIv--~~~~lGLl~G~~G~~~~~~p~~r~c~~~tGg~~Lm~gv~~~Flf~~~l~l~~~~~  483 (806)
T PF05478_consen  406 YEKYDSYRWIVGLILCCVLLLIV--LCLLLGLLCGCCGYRRRADPTDRGCSSNTGGNFLMAGVGLSFLFSWFLMLLVLFY  483 (806)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhhccCCCCCCCcccCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455555444 445555555544  3333444578898 32 1221       22332  22 66789999999999999


Q ss_pred             HHHhhhhc
Q 027066          144 LLAGSARN  151 (229)
Q Consensus       144 Ll~Ga~~N  151 (229)
                      |+.|....
T Consensus       484 Fl~G~~~~  491 (806)
T PF05478_consen  484 FLVGGNTY  491 (806)
T ss_pred             HHHHhhhh
Confidence            99999763

Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane

>cd07912 Tweety_N N-terminal domain of the protein encoded by the Drosophila tweety gene and related proteins, a family of chloride ion channels

Probab=82.12  E-value=6.7  Score=38.25  Aligned_cols=30  Identities=13%  Similarity=0.071  Sum_probs=17.1

Q ss_pred             hhhh-HHHHHHHHHHHHHHHHHHhccccccC
Q 027066           85 STVY-GLSAFGLLLISQAVVNGVTRCLCFGK  114 (229)
Q Consensus        85 A~~l-Gv~A~v~Ll~aqvv~~~~~~C~Ccg~  114 (229)
                      |+++ |..|++.+++.-++..+...|.||.+
T Consensus        38 Sv~~~a~iaavwlil~ll~ll~~~~~~CCcr   68 (418)
T cd07912          38 SLLILASIPAACLILSLLFLLVYLITRCCDR   68 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence            5555 55555555555566665555666633

The protein product of the Drosophila tweety (tty) gene is thought to form a trans-membrane protein with five membrane-spanning regions and a cytoplasmic C-terminus. This N-terminal domain contains the putative transmembrane spanning regions. Tweety has been suggested as a candidate for a large conductance chloride channel, both in vertebrate and insect cells. Three human homologs have been identified and designated TTYH1-3. TTYH2 has been associated with the progression of cancer, and Drosophila melanogaster tweety has been assumed to play a role in development. TTYH2, and TTYH3 bind to and are ubiquinated by Nedd4-2, a HECT type E3 ubiquitin ligase, which most likely plays a role in controlling the cellular levels of tweety family proteins.

>PF05360 YiaAB: yiaA/B two helix domain; InterPro: IPR008024 This domain consists of two transmembrane helices and a conserved linking section

Probab=81.31  E-value=2.3  Score=29.86  Aligned_cols=44  Identities=32%  Similarity=0.307  Sum_probs=34.3

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhcccccccccccCCCCcccccccccchhhhhHHHHHHHH
Q 027066          130 FIVSWVSFLGAEACLLAGSARNAYHTKYRKIFGGGDLSCATLRKGVFAAGAALTLLSLA  188 (229)
Q Consensus       130 ~v~SWi~F~IAe~~Ll~Ga~~N~~htk~~~~~~~~~~~C~~~r~GvFaagAvl~l~t~~  188 (229)
                      ...+|+.|+++..+++.|.- |....-              --||.++.+-.+++.+++
T Consensus         2 ~~~~~~~f~i~~~~~~iGl~-~~~~~l--------------~~KGy~~~~~l~~l~s~~   45 (53)
T PF05360_consen    2 VGQSWISFGISIVLMLIGLW-NAPLDL--------------SEKGYYAMGLLFLLFSAF   45 (53)
T ss_pred             hhHHHHHHHHHHHHHHHHHH-hCCCCH--------------HHHHHHHHHHHHHHHHHH
Confidence            46799999999999999986 654332              268889888888877654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00