Citrus Sinensis ID: 027086

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------23
Protein Sequence
MASQNDDALKRLRCQRIGCNATFTEDDNPEGSCTFHDSGPIFHDGMKEWSCCKRRSHDFSLFLEIPGCKTGKHTTEKPVLTKPVATSKTPAPAPAPSTTLGSSTPSKELCSRCRQGFFCSDHGSQAKEQTNYAPAVPAGSNVAAEVPPVPVKKKIGINEPQICKNKGCGKTFKEKDNHETACSYHPGPAVFHDRMRGWKCCDIHVKEFDEFMGIPPCTKGWHDANLSS
Secondary Structure (PSIPRED)
cccccHHcccccEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccEEcccccccccccccccccccccccHHHHccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccEEEEccccccEEccccccccccccccccccEHcccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccEEcccccccccccccccccEEccccccccccccccccHHHHHcccccccccccccccc
Coil and Loop (DISEMBL)
MASQNDDALKRLRCqrigcnatfteddnpegsctfhdsgpifhdgmkewscckrrshdfslfleipgcktgkhttekpvltkpvatsktpapapapsttlgsstpskelcsrcrqgffcsdhgsqakeqtnyapavpagsnvaaevppvpvkkkiginepqicknkgcgktfkekdnhetacsyhpgpavfhdrmrgwkcCDIHVKefdefmgippctkgwhdanlss
Flexible Loop (DISEMBL)
MASQNDDALKRLRCQRIGCNatfteddnpegsCTFHDSGPIFHDGMKEWSCCKRRSHDFSLFLEipgcktgkhttekpvltkpvatsktpapapapsttlgsstpsKELCSRCRQGFFCSDHGSQAKEQTNYAPAVPAGSNVAAEVPPVPvkkkiginepqicknkgCGKTFKEKDNHETACSYHPGPAVFHDRMRGWKCCDIHVKEFDefmgippctkgwhdanlss
Low Complexity Region (SEG)
MASQNDDALKRLRCQRIGCNATFTEDDNPEGSCTFHDSGPIFHDGMKEWSCCKRRSHDFSLFLEIPGCKTGKHTTEKPVLtkpvatsktpapapapsttlgsstpskELCSRCRQGFFCSDHGSQAKEQTNYAPAVPAGSNVAAEvppvpvkkkIGINEPQICKNKGCGKTFKEKDNHETACSYHPGPAVFHDRMRGWKCCDIHVKEFDEFMGIPPCTKGWHDANLSS
Disordered region (IsUnstruct)
***********LRCQRIGCNATFTE*****GSCTFHDSGPIFHDGMKEWSCCKRRSHDFSLFLEIPGCKT******************************************CRQGFFC********************************KKKIGINEPQICKNKGCGKTFKEKDNHETACSYHPGPAVFHDRMRGWKCCDIHVKEFDEFMGIPPCTKGWH******
Disordered Region (DISOPRED)
**********RLRCQRIGCNATFTEDDNPEGSCTFHDSGPIFHDGMKEWSCCKRRSHDFSLFLEIPGCKTGK****************************************************************************************QICKNKGCGKTFKEKDNHETACSYHPGPAVFHDRMRGWKCCDIHVKEFDEFMGIPPCTK*********
Disordered Region (DISEMBL)
MASQNDDALKRLRCQRIGCNATFTEDDNPEGSCTFHDSGPIFHDGMKEWSCCKRRSHDFSLFLEIPGCKTGKHTTEKPVLTKP*************************LCSRCRQGFFCSDHGSQAKEQTNYAPAVPAGSNVAAEVPPVPVKKKIGINEPQICKNKGCGKTFKEKDNHETACSYHPGPAVFHDRMRGWKCCDIHVKEFDEFMGIPPCTKGWHDANLSS
Disordered Region (DISPRO)
*********KRLRCQRIGCNATFTEDDNPEGSCTFHDSGPIFHDGMKEWSCCKRRSHDFSLFLEIPGCKT*************************************************************************************GINEPQICKNKGCGKTFKEKDNHETACSYHPGPAVFHDRMRGWKCCDIHVKEFDEFMGIPPCT**********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASQNDDALKRLRCQRIGCNATFTEDDNPEGSCTFHDSGPIFHDGMKEWSCCKRRSHDFSLFLEIPGCKTGKHTTEKPVLTKPVATSKTPAPAPAPSTTLGSSTPSKELCSRCRQGFFCSDHGSQAKEQTNYAPAVPAGSNVAAEVPPVPVKKKIGINEPQICKNKGCGKTFKEKDNHETACSYHPGPAVFHDRMRGWKCCDIHVKEFDEFMGIPPCTKGWHDANLSS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	228	2.2.26 [Sep-21-2011]
Q9SE33	226	Cysteine and histidine-ri	yes	no	0.934	0.942	0.687	4e-86
Q6EPW7	233	Cysteine and histidine-ri	yes	no	0.877	0.858	0.642	8e-77
Q9UHD1	332	Cysteine and histidine-ri	yes	no	0.846	0.581	0.336	2e-26
Q6NUA0	334	Cysteine and histidine-ri	N/A	no	0.877	0.598	0.330	3e-26
Q4R7U2	332	Cysteine and histidine-ri	N/A	no	0.811	0.557	0.325	2e-25
D4A4T9	331	Cysteine and histidine-ri	yes	no	0.846	0.583	0.331	2e-25
Q9D1P4	331	Cysteine and histidine-ri	yes	no	0.846	0.583	0.331	2e-25
Q5RD91	332	Cysteine and histidine-ri	yes	no	0.811	0.557	0.325	4e-25
Q29RL2	332	Cysteine and histidine-ri	yes	no	0.846	0.581	0.331	5e-25
Q5ZML4	331	Cysteine and histidine-ri	yes	no	0.842	0.580	0.343	6e-25

>sp|Q9SE33|RAR1_ARATH Cysteine and histidine-rich domain-containing protein RAR1 OS=Arabidopsis thaliana GN=RAR1 PE=1 SV=1

 Score =  317 bits (812), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 152/221 (68%), Positives = 175/221 (79%), Gaps = 8/221 (3%)

Query: 8   ALKRLRCQRIGCNATFTEDDNPEGSCTFHDSGPIFHDGMKEWSCCKRRSHDFSLFLEIPG 67
           A K+L+CQRIGCNA FT+DDNP+GSC FH SGP FHDGMKEWSCCK+RSHDFSLFLEIPG
Sbjct: 6   ATKKLQCQRIGCNAMFTDDDNPQGSCQFHASGPFFHDGMKEWSCCKQRSHDFSLFLEIPG 65

Query: 68  CKTGKHTTEKPVLTKPVATSKTPAPAPAPSTTLGSSTPSKELCSRCRQGFFCSDHGSQAK 127
           CKTGKHTTEKPVL K V       P  AP+++  ++  +K+ CSRCRQGFFCSDHGSQ K
Sbjct: 66  CKTGKHTTEKPVLAKSVPKH----PVAAPTSSPDANAATKDSCSRCRQGFFCSDHGSQPK 121

Query: 128 EQTNYAPAVPAGSN---VAAEVPPVPVKKKIGINEPQICKNKGCGKTFKEKDNHETACSY 184
           EQ       P  +    +    PPV  K  I IN+PQ+CKNKGCG+TFKE+DNHETACS+
Sbjct: 122 EQIKQTLNTPGQAEEEKIEPLAPPV-QKAVIDINQPQVCKNKGCGQTFKERDNHETACSH 180

Query: 185 HPGPAVFHDRMRGWKCCDIHVKEFDEFMGIPPCTKGWHDAN 225
           HPGPAVFHDR+RGWKCCD+HVKEFDEFM IPPCTKGWH ++
Sbjct: 181 HPGPAVFHDRLRGWKCCDVHVKEFDEFMEIPPCTKGWHSSS 221

Required specifically for plant innate immunity. Is essential for resistance conferred by multiple R genes recognizing different bacterial and oomycete pathogen isolates like avirulent P.syringae or H.parasitica (downy mildew). Contributes additively with SGT1B to RPP5-dependent resistance. Functions as positive regulator of RPS5 accumulation by assisting its stabilization. May function as co-chaperone of HSP90-2 to positively regulate the steady-state accumulation of RPM1 and protect it from SGT1-mediated degradation. Acts as negative regulator of pathogen-associated molecular pattern (PAMP)-triggered immunity.
Arabidopsis thaliana (taxid: 3702)

>sp|Q6EPW7|RAR1_ORYSJ Cysteine and histidine-rich domain-containing protein RAR1 OS=Oryza sativa subsp. japonica GN=RAR1 PE=1 SV=2

 Score =  286 bits (732), Expect = 8e-77,   Method: Compositional matrix adjust.
 Identities = 144/224 (64%), Positives = 171/224 (76%), Gaps = 24/224 (10%)

Query: 13  RCQRIGCNATFTEDDNPEGSCTFHDSGPIFHDGMKEWSCCKRRSHDFSLFLEIPGCKTGK 72
           RCQRIGC+ATFT+D+NP+GSC +H SGP+FHDGMK+WSCCK++SHDFSLFL IPGCKTGK
Sbjct: 25  RCQRIGCDATFTDDNNPDGSCQYHPSGPMFHDGMKQWSCCKQKSHDFSLFLAIPGCKTGK 84

Query: 73  HTTEKPVLTKPVATSKTPA-PAPAPSTTLGSSTPSKELCSRCRQGFFCSDHGSQAKEQTN 131
           HTTEKP+ TK V T  + A P      ++G+ T     CSRCRQGFFCSDHGSQ K Q  
Sbjct: 85  HTTEKPI-TKAVPTKPSKAVPVQTSKQSVGADT-----CSRCRQGFFCSDHGSQPKAQI- 137

Query: 132 YAPAVPAGSNVAAEVPPVPVKKK--------IGINEPQICKNKGCGKTFKEKDNHETACS 183
             P   + +N+      VPV+K         I +NEP++CKNKGCGKT+KEKDNH+ AC 
Sbjct: 138 --PTATSDTNM------VPVEKPAVPPPKKKIDLNEPRVCKNKGCGKTYKEKDNHDEACD 189

Query: 184 YHPGPAVFHDRMRGWKCCDIHVKEFDEFMGIPPCTKGWHDANLS 227
           YHPGPAVF DR+RGWKCCDIHVKEFDEFM IPPCTKGWH+A+ +
Sbjct: 190 YHPGPAVFRDRIRGWKCCDIHVKEFDEFMEIPPCTKGWHNADAA 233

Involved in basal disease resistance to virulent strain of bacterial blight (X.oryzae) and compatible race of rice blast fungus (M.grisea). May act as positive regulator of basal defense. Associates with HSP90 and is essential for the pathogen-associated molecular pattern (PAMP)-triggered immune responses specifically enhanced by RAC1.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9UHD1|CHRD1_HUMAN Cysteine and histidine-rich domain-containing protein 1 OS=Homo sapiens GN=CHORDC1 PE=1 SV=2

 Score =  119 bits (297), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 78/232 (33%), Positives = 107/232 (46%), Gaps = 39/232 (16%)

Query: 12  LRCQRIGCNATFTEDDNPEGSCTFHDSGPIFHDGMKEWSCCKRRSHDFSLFLEIPGCKTG 71
           L C   GC   F  + N + +CT+H   P+FHD +K WSCCKRR+ DFS FL I GC  G
Sbjct: 3   LLCYNRGCGQRFDPETNSDDACTYHPGVPVFHDALKGWSCCKRRTTDFSDFLSIVGCTKG 62

Query: 72  KHTTEKPVLTKPVATSKTPAPAPAPSTTLGSSTPSKELCSRCRQGFFCSDHGSQA----- 126
           +H +EKP               P P      +T  KELC   +  F   +H  QA     
Sbjct: 63  RHNSEKP---------------PEPVKPEVKTTEKKELC-ELKPKF--QEHIIQAPKPVE 104

Query: 127 --------KEQTNYAPAVPAGSNVAAEVPPVPV-----KKKIGINEPQI---CKNKGCGK 170
                   +  TN    + A    A +   +       KK+   +E +I   CKN GC K
Sbjct: 105 AIKRPSPDEPMTNLELKISASLKQALDKLKLSSGNEENKKEEDNDEIKIGTSCKNGGCSK 164

Query: 171 TFKEKDNHETACSYHPGPAVFHDRMRGWKCCDIHVKEFDEFMGIPPCTKGWH 222
           T++  ++ E  C YH G  +FH+ M+ W CC     +F+ F+    CTKG H
Sbjct: 165 TYQGLESLEEVCVYHSGVPIFHEGMKYWSCCRRKTSDFNTFLAQEGCTKGKH 216

Regulates centrosome duplication, probably by inhibiting the kinase activity of ROCK2. Proposed to act as co-chaperone for HSP90. May play a role in the regulation of NOD1 via a HSP90 chaperone complex. In vitro, has intrinsic chaperone activity. This function may be achieved by inhibiting association of ROCK2 with NPM1. Involved in stress response. Prevents tumorigenesis.

Homo sapiens (taxid: 9606)

>sp|Q6NUA0|CHRD1_XENLA Cysteine and histidine-rich domain-containing protein 1 OS=Xenopus laevis GN=chordc1 PE=2 SV=1

 Score =  118 bits (296), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 74/224 (33%), Positives = 103/224 (45%), Gaps = 24/224 (10%)

Query: 12  LRCQRIGCNATFTEDDNPEGSCTFHDSGPIFHDGMKEWSCCKRRSHDFSLFLEIPGCKTG 71
           L C   GC   +  + N + SCT+H   P+FHD +K WSCCKRR+ DFS FL I GC  G
Sbjct: 3   LLCYNRGCGQRYDPEGNSDDSCTYHPGVPVFHDALKGWSCCKRRTTDFSDFLSIVGCTKG 62

Query: 72  KHTTEKPVLTKPVATSKTPAPAPAPSTTLGSSTPS-KELCSRCRQGFFCSDHGSQAKEQT 130
           +H  EKP   +PV   K      +    L    P   EL  +  +   C +  S  +   
Sbjct: 63  QHNNEKP--PEPV---KPEVKITSDKKELADFKPKFNELIIQAPKPIECINRPSSDE--- 114

Query: 131 NYAPAVPAGSNVAAEVPPVPVKKKIGINEPQI------------CKNKGCGKTFKEKDNH 178
              P       ++A +     K K+  N+  +            CKN GC KTF    ++
Sbjct: 115 ---PMAKLQLKISASLKQALDKLKLSENDKTVTDESGEIKIGTSCKNGGCLKTFAGPQSN 171

Query: 179 ETACSYHPGPAVFHDRMRGWKCCDIHVKEFDEFMGIPPCTKGWH 222
           E  C YH G  +FH+ M+ W CC     +F+ F+ +  CTKG H
Sbjct: 172 EEVCHYHSGVPIFHEGMKYWSCCRRKTSDFNTFLSLEGCTKGTH 215

Regulates centrosome duplication.

Xenopus laevis (taxid: 8355)

>sp|Q4R7U2|CHRD1_MACFA Cysteine and histidine-rich domain-containing protein 1 OS=Macaca fascicularis GN=CHORDC1 PE=2 SV=1

 Score =  115 bits (289), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 78/240 (32%), Positives = 106/240 (44%), Gaps = 55/240 (22%)

Query: 12  LRCQRIGCNATFTEDDNPEGSCTFHDSGPIFHDGMKEWSCCKRRSHDFSLFLEIPGCKTG 71
           L C    C   F  + N + +CT+H   P+FHD +K WSCCKRR+ DFS FL I GC  G
Sbjct: 3   LLCYNRACGQRFDPETNSDDACTYHPGVPVFHDALKGWSCCKRRTTDFSDFLSIVGCTKG 62

Query: 72  KHTTEKP-------VLT---------------------KPVATSKTPAP-APAPSTTLGS 102
           +H +EKP       V T                     KPV   K P+P  P  +  L  
Sbjct: 63  RHNSEKPPEPVKPEVKTTEKKELSELKPKFQEHIIQAPKPVEAIKRPSPDEPMTNLELKI 122

Query: 103 STPSKELCSRCRQGFFCSDHGSQAKEQTNYAPAVPAGSNVAAEVPPVPVKKKIGINEPQI 162
           S   K+   + +     S +    KE+ N             E+       KIG +    
Sbjct: 123 SASLKQALDKLK---LSSGNEEDKKEEDN------------DEI-------KIGTS---- 156

Query: 163 CKNKGCGKTFKEKDNHETACSYHPGPAVFHDRMRGWKCCDIHVKEFDEFMGIPPCTKGWH 222
           CKN GC KT++  ++ E  C YH G  +FH+ M+ W CC     +F+ F+    CTKG H
Sbjct: 157 CKNGGCSKTYRGLESLEEVCVYHSGVPIFHEGMKYWSCCRRKTSDFNTFLAQEGCTKGRH 216

Regulates centrosome duplication, probably by inhibiting the kinase activity of ROCK2. Proposed to act as co-chaperone for HSP90. May play a role in the regulation of NOD1 via a HSP90 chaperone complex. In vitro, has intrinsic chaperone activity. This function may be achieved by inhibiting association of ROCK2 with NPM1. Involved in stress response. Prevents tumorigenesis.

Macaca fascicularis (taxid: 9541)

>sp|D4A4T9|CHRD1_RAT Cysteine and histidine-rich domain-containing protein 1 OS=Rattus norvegicus GN=Chordc1 PE=3 SV=1

 Score =  115 bits (289), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 77/232 (33%), Positives = 106/232 (45%), Gaps = 39/232 (16%)

Query: 12  LRCQRIGCNATFTEDDNPEGSCTFHDSGPIFHDGMKEWSCCKRRSHDFSLFLEIPGCKTG 71
           L C   GC   F  + N + +CT+H   P+FHD +K WSCCKRR+ DFS FL I GC  G
Sbjct: 3   LLCYNRGCGQRFDPEANADDACTYHPGVPVFHDALKGWSCCKRRTTDFSDFLSIVGCTKG 62

Query: 72  KHTTEKPVLTKPVATSKTPAPAPAPSTTLGSSTPSKELCSRCRQGFFCSDHGSQA----- 126
           +H +EKP               P P      +T  KEL S  +  F   +H  QA     
Sbjct: 63  RHNSEKP---------------PEPVKPEVKTTEKKEL-SELKPKF--QEHIIQAPKPVE 104

Query: 127 --------KEQTNYAPAVPAGSNVAAEVPPVPV-----KKKIGINEPQI---CKNKGCGK 170
                   +  TN    + A    A +   +       KK+   +E +I   CKN GC K
Sbjct: 105 AIKRPSPDEPMTNLELKISASLKQALDKLKLSSGNEEDKKEEDSDEIKIGTSCKNGGCSK 164

Query: 171 TFKEKDNHETACSYHPGPAVFHDRMRGWKCCDIHVKEFDEFMGIPPCTKGWH 222
           T++   + E  C YH G  +FH+ M+ W CC     +F+ F+    CT+G H
Sbjct: 165 TYQGLQSLEEVCVYHSGVPIFHEGMKYWSCCRRKTSDFNTFLAQEGCTRGKH 216

Regulates centrosome duplication, probably by inhibiting the kinase activity of ROCK2. Proposed to act as co-chaperone for HSP90. May play a role in the regulation of NOD1 via a HSP90 chaperone complex. In vitro, has intrinsic chaperone activity. This function may be achieved by inhibiting association of ROCK2 with NPM1. Involved in stress response. Prevents tumorigenesis.

Rattus norvegicus (taxid: 10116)

>sp|Q9D1P4|CHRD1_MOUSE Cysteine and histidine-rich domain-containing protein 1 OS=Mus musculus GN=Chordc1 PE=1 SV=1

 Score =  115 bits (289), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 77/232 (33%), Positives = 106/232 (45%), Gaps = 39/232 (16%)

Query: 12  LRCQRIGCNATFTEDDNPEGSCTFHDSGPIFHDGMKEWSCCKRRSHDFSLFLEIPGCKTG 71
           L C   GC   F  + N + +CT+H   P+FHD +K WSCCKRR+ DFS FL I GC  G
Sbjct: 3   LLCYNRGCGQRFDPEANSDDACTYHPGVPVFHDALKGWSCCKRRTTDFSDFLSIVGCTKG 62

Query: 72  KHTTEKPVLTKPVATSKTPAPAPAPSTTLGSSTPSKELCSRCRQGFFCSDHGSQA----- 126
           +H +EKP               P P      +T  KEL S  +  F   +H  QA     
Sbjct: 63  RHNSEKP---------------PEPVKPEVKTTEKKEL-SELKPKF--QEHIIQAPKPVE 104

Query: 127 --------KEQTNYAPAVPAGSNVAAEVPPVPV-----KKKIGINEPQI---CKNKGCGK 170
                   +  TN    + A    A +   +       KK+   +E +I   CKN GC K
Sbjct: 105 AIKRPSPDEPMTNLELKISASLKQALDKLKLSSGSEEDKKEEDSDEIKIGTSCKNGGCSK 164

Query: 171 TFKEKDNHETACSYHPGPAVFHDRMRGWKCCDIHVKEFDEFMGIPPCTKGWH 222
           T++   + E  C YH G  +FH+ M+ W CC     +F+ F+    CT+G H
Sbjct: 165 TYQGLQSLEEVCVYHSGVPIFHEGMKYWSCCRRKTSDFNTFLAQEGCTRGKH 216

Regulates centrosome duplication, probably by inhibiting the kinase activity of ROCK2. Proposed to act as co-chaperone for HSP90. May play a role in the regulation of NOD1 via a HSP90 chaperone complex. In vitro, has intrinsic chaperone activity. This function may be achieved by inhibiting association of ROCK2 with NPM1. Involved in stress response. Prevents tumorigenesis.

Mus musculus (taxid: 10090)

>sp|Q5RD91|CHRD1_PONAB Cysteine and histidine-rich domain-containing protein 1 OS=Pongo abelii GN=CHORDC1 PE=2 SV=1

 Score =  114 bits (286), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 78/240 (32%), Positives = 106/240 (44%), Gaps = 55/240 (22%)

Query: 12  LRCQRIGCNATFTEDDNPEGSCTFHDSGPIFHDGMKEWSCCKRRSHDFSLFLEIPGCKTG 71
           L C   GC   F  + N + +CT+H   P+FHD +K WSCCKRR+ DFS FL I GC  G
Sbjct: 3   LLCYNRGCGQRFDPETNSDDACTYHPGVPVFHDALKGWSCCKRRTTDFSDFLSIVGCTKG 62

Query: 72  KHTTEKP-------VLT---------------------KPVATSKTPAP-APAPSTTLGS 102
           +H +EKP       V T                     KPV   K P+P  P  +  L  
Sbjct: 63  RHNSEKPPESVKPEVKTTEKKELSELKPKFQEHIIQAPKPVEAIKRPSPDEPMTNLELKI 122

Query: 103 STPSKELCSRCRQGFFCSDHGSQAKEQTNYAPAVPAGSNVAAEVPPVPVKKKIGINEPQI 162
           S   K+   + +     S +    KE+ N             E+       KIG +    
Sbjct: 123 SASLKQALDKLK---LSSGNEENKKEEDN------------DEI-------KIGTS---- 156

Query: 163 CKNKGCGKTFKEKDNHETACSYHPGPAVFHDRMRGWKCCDIHVKEFDEFMGIPPCTKGWH 222
           CKN GC KT++  ++ E  C YH G  + H+ M+ W CC     +F+ F+    CTKG H
Sbjct: 157 CKNGGCSKTYRGLESLEEVCVYHSGVPISHEGMKYWSCCRRKTSDFNTFLAQEGCTKGKH 216

Regulates centrosome duplication, probably by inhibiting the kinase activity of ROCK2. Proposed to act as co-chaperone for HSP90. May play a role in the regulation of NOD1 via a HSP90 chaperone complex. In vitro, has intrinsic chaperone activity. This function may be achieved by inhibiting association of ROCK2 with NPM1. Involved in stress response. Prevents tumorigenesis.

Pongo abelii (taxid: 9601)

>sp|Q29RL2|CHRD1_BOVIN Cysteine and histidine-rich domain-containing protein 1 OS=Bos taurus GN=CHORDC1 PE=2 SV=1

 Score =  114 bits (285), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 77/232 (33%), Positives = 105/232 (45%), Gaps = 39/232 (16%)

Query: 12  LRCQRIGCNATFTEDDNPEGSCTFHDSGPIFHDGMKEWSCCKRRSHDFSLFLEIPGCKTG 71
           L C   GC   F  + N + +CT+H   P+FHD +K WSCCKRR+ DFS FL I GC  G
Sbjct: 3   LLCYNRGCGQRFDPETNSDDACTYHPGVPVFHDALKGWSCCKRRTTDFSDFLSIVGCTKG 62

Query: 72  KHTTEKPVLTKPVATSKTPAPAPAPSTTLGSSTPSKELCSRCRQGFFCSDHGSQA----- 126
           +H +EKP               P P      +T  KEL S  +  F   +H  QA     
Sbjct: 63  RHNSEKP---------------PEPVKPEVKTTEKKEL-SELKPKF--QEHIIQAPKPVE 104

Query: 127 --------KEQTNYAPAVPAGSNVAAEVPPVPV-----KKKIGINEPQI---CKNKGCGK 170
                   +  TN    + A    A +   +       KK+   +E +I   CKN GC K
Sbjct: 105 AIKRPSPDEPMTNLELKISASLKQALDKLKLSSGNEENKKEEDSDEIKIGTSCKNGGCSK 164

Query: 171 TFKEKDNHETACSYHPGPAVFHDRMRGWKCCDIHVKEFDEFMGIPPCTKGWH 222
           T++   + E  C YH G  +FH+ M+ W CC     +F+ F+    CT G H
Sbjct: 165 TYQGPQSLEEVCVYHSGVPIFHEGMKYWSCCRRKTSDFNTFLAQEGCTTGKH 216

Regulates centrosome duplication, probably by inhibiting the kinase activity of ROCK2. Proposed to act as co-chaperone for HSP90. May play a role in the regulation of NOD1 via a HSP90 chaperone complex. In vitro, has intrinsic chaperone activity. This function may be achieved by inhibiting association of ROCK2 with NPM1. Involved in stress response. Prevents tumorigenesis.

Bos taurus (taxid: 9913)

>sp|Q5ZML4|CHRD1_CHICK Cysteine and histidine-rich domain-containing protein 1 OS=Gallus gallus GN=CHORDC1 PE=2 SV=1

 Score =  114 bits (285), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 80/233 (34%), Positives = 103/233 (44%), Gaps = 41/233 (17%)

Query: 12  LRCQRIGCNATFTEDDNPEGSCTFHDSGPIFHDGMKEWSCCKRRSHDFSLFLEIPGCKTG 71
           L C   GC   F  + N E SCT+H   P+FHD +K WSCCKRR+ DFS FL I GC  G
Sbjct: 3   LLCYNRGCGQRFDPETNTEDSCTYHPGVPVFHDALKGWSCCKRRTTDFSDFLSIVGCTKG 62

Query: 72  KHTTEKPVLTKPVATSKTPAPAPAPSTTLGSSTPSKELCSRCRQGFFCSDHGSQA----- 126
            H +EKP           P P       + S+T  KEL +  +  F   +H  QA     
Sbjct: 63  LHNSEKP-----------PEPVKP---DVKSTTERKEL-AELKPKF--QEHIIQAPKPLE 105

Query: 127 --KEQTNYAPAVPAGSNVAAEVPPVPVKKK---------------IGINEPQICKNKGCG 169
             K  +   P       V+A +     K K               I I  P  CKN GC 
Sbjct: 106 TIKRPSPDEPMTNLQLKVSASLKQALDKLKLSSENEEKKEEDSDEIKIGTP--CKNAGCS 163

Query: 170 KTFKEKDNHETACSYHPGPAVFHDRMRGWKCCDIHVKEFDEFMGIPPCTKGWH 222
           KT++   + E  C YH G  +FH+ M+ W CC     +F+ F+    CT G H
Sbjct: 164 KTYQGPHSTEEVCQYHSGVPIFHEGMKYWSCCKRKTSDFNTFLAQEGCTTGTH 216

Regulates centrosome duplication.

Gallus gallus (taxid: 9031)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	228
21552979	221	Rar1 [Nicotiana tabacum]	0.947	0.977	0.697	4e-88
449442307	219	PREDICTED: cysteine and histidine-rich d	0.916	0.954	0.707	8e-87
118484300	215	unknown [Populus trichocarpa]	0.921	0.976	0.7	3e-86
449495939	219	PREDICTED: LOW QUALITY PROTEIN: cysteine	0.916	0.954	0.703	3e-86
255539663	215	rar1, putative [Ricinus communis] gi|223	0.925	0.981	0.690	3e-85
240256433	226	disease resistance protein [Arabidopsis	0.934	0.942	0.687	2e-84
10177869	226	RAR1 [Arabidopsis thaliana]	0.934	0.942	0.683	1e-83
388505250	224	unknown [Lotus japonicus]	0.947	0.964	0.668	5e-83
297795977	225	hypothetical protein ARALYDRAFT_331546 [	0.929	0.942	0.669	2e-81
359807618	224	uncharacterized protein LOC100819671 [Gl	0.925	0.941	0.671	2e-81

>gi|21552979|gb|AAM62409.1|AF480487_1 Rar1 [Nicotiana tabacum]

 Score =  329 bits (844), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 157/225 (69%), Positives = 179/225 (79%), Gaps = 9/225 (4%)

Query: 9   LKRLRCQRIGCNATFTEDDNPEGSCTFHDSGPIFHDGMKEWSCCKRRSHDFSLFLEIPGC 68
           ++RLRCQRIGCNATFTEDDNPE SCT+H+SGP+FHDGMK+WSCCK+ SHDFSLFLEIPGC
Sbjct: 1   MERLRCQRIGCNATFTEDDNPENSCTYHESGPLFHDGMKKWSCCKKSSHDFSLFLEIPGC 60

Query: 69  KTGKHTTEKPVLTKPVATSKTPAPAPAPSTTLGSSTPSKELCSRCRQGFFCSDHGSQAKE 128
           K GKHTTEKPV+  P A      PAP  +T +      KE C RCRQGFFCSDHGSQ +E
Sbjct: 61  KIGKHTTEKPVIANPAANRNRAIPAPTSTTNVSP----KEACPRCRQGFFCSDHGSQPRE 116

Query: 129 ----QTNYAPAVPAGSNV-AAEVPPVPVKKKIGINEPQICKNKGCGKTFKEKDNHETACS 183
                +N   +VP+ SN    +  P PVKKK+ INEPQICKNKGCGKTF EK+NH+TACS
Sbjct: 117 VIPKASNTVTSVPSESNTDIQQCHPAPVKKKVDINEPQICKNKGCGKTFTEKENHDTACS 176

Query: 184 YHPGPAVFHDRMRGWKCCDIHVKEFDEFMGIPPCTKGWHDANLSS 228
           YHPGPA+FHDRMRGWKCCDIHVKEFDEFM I PCT GWH+A+ +S
Sbjct: 177 YHPGPAIFHDRMRGWKCCDIHVKEFDEFMSISPCTTGWHNASPAS 221

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449442307|ref|XP_004138923.1| PREDICTED: cysteine and histidine-rich domain-containing protein RAR1-like [Cucumis sativus]

 Score =  325 bits (834), Expect = 8e-87,   Method: Compositional matrix adjust.
 Identities = 155/219 (70%), Positives = 176/219 (80%), Gaps = 10/219 (4%)

Query: 9   LKRLRCQRIGCNATFTEDDNPEGSCTFHDSGPIFHDGMKEWSCCKRRSHDFSLFLEIPGC 68
           + R+ CQRIGCNA FTEDDNPEGSC +HDSGPIFHDGMKEWSCCK+RSHDFSLFLEIPGC
Sbjct: 5   IVRVPCQRIGCNALFTEDDNPEGSCQYHDSGPIFHDGMKEWSCCKKRSHDFSLFLEIPGC 64

Query: 69  KTGKHTTEKPVLTKPVATSKTPAPAPAPSTTLGSSTPSKELCSRCRQGFFCSDHGSQAK- 127
           KTGKHTTEKPVLTKP    K P+P  + + TLG     KELC+RC+QGFFCSDHG+Q K 
Sbjct: 65  KTGKHTTEKPVLTKPTTGVKKPSPPSSMTNTLG-----KELCARCQQGFFCSDHGTQIKG 119

Query: 128 --EQTNYAPAVPAGSNVAAEVPPVPVKKKIGINEPQICKNKGCGKTFKEKDNHETACSYH 185
             +  N    +P  SN   + P    KKKIG+NEPQICKNKGCGKTF E +NH+TACSYH
Sbjct: 120 NNKSINETSTIPGASNTDTQAP--QKKKKIGMNEPQICKNKGCGKTFTEMENHDTACSYH 177

Query: 186 PGPAVFHDRMRGWKCCDIHVKEFDEFMGIPPCTKGWHDA 224
           PGP VFHDRMRGW+CC+IHVKEFDEFM I PC++GWH+A
Sbjct: 178 PGPPVFHDRMRGWQCCNIHVKEFDEFMDIAPCSRGWHNA 216

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118484300|gb|ABK94029.1| unknown [Populus trichocarpa]

 Score =  323 bits (829), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 154/220 (70%), Positives = 178/220 (80%), Gaps = 10/220 (4%)

Query: 9   LKRLRCQRIGCNATFTEDDNPEGSCTFHDSGPIFHDGMKEWSCCKRRSHDFSLFLEIPGC 68
           + +LRCQRIGC+ATFTED+NP+GSCT+HDSGP FHDGMKEWSCCK+RSHDFSLFLEIPGC
Sbjct: 6   VPKLRCQRIGCDATFTEDNNPDGSCTYHDSGPFFHDGMKEWSCCKKRSHDFSLFLEIPGC 65

Query: 69  KTGKHTTEKPVLTKPVATSKTPAPAPAPSTTLGSSTPSKELCSRCRQGFFCSDHGSQAKE 128
           KTGKHTTEKPVL K   T     P   P+    +++ SKE C RC+QGFFCSDHGSQA+ 
Sbjct: 66  KTGKHTTEKPVLAKATPTPTPKNPFSPPTAAPATNSSSKESCPRCKQGFFCSDHGSQAQP 125

Query: 129 QTNYAPAVPAGSNVAAEVPPVPVKKKIGINEPQICKNKGCGKTFKEKDNHETACSYHPGP 188
           +     A PA S  +A     P KK + IN+PQ CKN+GCG+TFKEKDNHETAC+YHPGP
Sbjct: 126 K-----AAPAKSYASA-----PAKKVVDINQPQTCKNQGCGQTFKEKDNHETACNYHPGP 175

Query: 189 AVFHDRMRGWKCCDIHVKEFDEFMGIPPCTKGWHDANLSS 228
           AVFHDRMRGWKCCDIHVKEFDEFM +PPC+KGWHDA+ +S
Sbjct: 176 AVFHDRMRGWKCCDIHVKEFDEFMSVPPCSKGWHDADPAS 215

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449495939|ref|XP_004159991.1| PREDICTED: LOW QUALITY PROTEIN: cysteine and histidine-rich domain-containing protein RAR1-like [Cucumis sativus]

 Score =  323 bits (828), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 154/219 (70%), Positives = 175/219 (79%), Gaps = 10/219 (4%)

Query: 9   LKRLRCQRIGCNATFTEDDNPEGSCTFHDSGPIFHDGMKEWSCCKRRSHDFSLFLEIPGC 68
           + R+ CQRIGCNA FTEDDNPEGSC +HDSGPIFHDGMKEWSCCK+RSHDFSLFLEIPGC
Sbjct: 5   IVRVPCQRIGCNALFTEDDNPEGSCQYHDSGPIFHDGMKEWSCCKKRSHDFSLFLEIPGC 64

Query: 69  KTGKHTTEKPVLTKPVATSKTPAPAPAPSTTLGSSTPSKELCSRCRQGFFCSDHGSQAK- 127
           KTGKHTTEKPVLTKP    K P+P  + + TLG     KELC+RC+QGFFCSDHG+Q K 
Sbjct: 65  KTGKHTTEKPVLTKPTTGVKKPSPPSSMTNTLG-----KELCARCQQGFFCSDHGTQIKG 119

Query: 128 --EQTNYAPAVPAGSNVAAEVPPVPVKKKIGINEPQICKNKGCGKTFKEKDNHETACSYH 185
             +  N    +P  SN   + P    KK IG+NEPQICKNKGCGKTF E +NH+TACSYH
Sbjct: 120 NNKSINETSTIPGASNTDTQAP--QKKKXIGMNEPQICKNKGCGKTFTEMENHDTACSYH 177

Query: 186 PGPAVFHDRMRGWKCCDIHVKEFDEFMGIPPCTKGWHDA 224
           PGP VFHDRMRGW+CC+IHVKEFDEFM I PC++GWH+A
Sbjct: 178 PGPPVFHDRMRGWQCCNIHVKEFDEFMDIAPCSRGWHNA 216

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255539663|ref|XP_002510896.1| rar1, putative [Ricinus communis] gi|223550011|gb|EEF51498.1| rar1, putative [Ricinus communis]

 Score =  320 bits (820), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 152/220 (69%), Positives = 178/220 (80%), Gaps = 9/220 (4%)

Query: 6   DDALKRLRCQRIGCNATFTEDDNPEGSCTFHDSGPIFHDGMKEWSCCKRRSHDFSLFLEI 65
           +  + RLRCQRIGCNATFT+DDNPEGSC +HD+GPIFHDG+KEWSCCK+RSHDF+LFLEI
Sbjct: 2   EQEVVRLRCQRIGCNATFTDDDNPEGSCQYHDAGPIFHDGIKEWSCCKKRSHDFTLFLEI 61

Query: 66  PGCKTGKHTTEKPVLTKPVATSKTPAPAPAPSTTLGSSTPSKELCSRCRQGFFCSDHGSQ 125
           PGCKTGKHTTEKPVL+K   + K P  APA    + ++  SKE C RC+QGFFCSDHGSQ
Sbjct: 62  PGCKTGKHTTEKPVLSKTTPSPKKPISAPA--AAMATNLSSKESCPRCKQGFFCSDHGSQ 119

Query: 126 AKEQTNYAPAVPAGSNVAAEVPPVPVKKKIGINEPQICKNKGCGKTFKEKDNHETACSYH 185
            K+    APA  + S  ++     P  K + IN+PQ C+N+GCGKTFKEKDNHE ACSYH
Sbjct: 120 VKQP---APARSSASQGSSG----PRTKIVDINQPQTCRNQGCGKTFKEKDNHEIACSYH 172

Query: 186 PGPAVFHDRMRGWKCCDIHVKEFDEFMGIPPCTKGWHDAN 225
           PGPAVFHDR+RGWKCCD+HVKEFDEFM IPPCTKGWH+A+
Sbjct: 173 PGPAVFHDRLRGWKCCDVHVKEFDEFMTIPPCTKGWHNAD 212

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|240256433|ref|NP_568762.6| disease resistance protein [Arabidopsis thaliana] gi|75203770|sp|Q9SE33.1|RAR1_ARATH RecName: Full=Cysteine and histidine-rich domain-containing protein RAR1; AltName: Full=AtRAR1; AltName: Full=CHORD domain-containing protein RAR1; AltName: Full=Protein PPHB SUSCEPTIBLE 2; AltName: Full=Protein REQUIRED FOR MLA12 RESISTANCE 1 gi|6581048|gb|AAF18433.1|AF192262_1 RAR1 [Arabidopsis thaliana] gi|21618175|gb|AAM67225.1| RAR1 [Arabidopsis thaliana] gi|332008733|gb|AED96116.1| disease resistance protein [Arabidopsis thaliana]

 Score =  317 bits (812), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 152/221 (68%), Positives = 175/221 (79%), Gaps = 8/221 (3%)

Query: 8   ALKRLRCQRIGCNATFTEDDNPEGSCTFHDSGPIFHDGMKEWSCCKRRSHDFSLFLEIPG 67
           A K+L+CQRIGCNA FT+DDNP+GSC FH SGP FHDGMKEWSCCK+RSHDFSLFLEIPG
Sbjct: 6   ATKKLQCQRIGCNAMFTDDDNPQGSCQFHASGPFFHDGMKEWSCCKQRSHDFSLFLEIPG 65

Query: 68  CKTGKHTTEKPVLTKPVATSKTPAPAPAPSTTLGSSTPSKELCSRCRQGFFCSDHGSQAK 127
           CKTGKHTTEKPVL K V       P  AP+++  ++  +K+ CSRCRQGFFCSDHGSQ K
Sbjct: 66  CKTGKHTTEKPVLAKSVPKH----PVAAPTSSPDANAATKDSCSRCRQGFFCSDHGSQPK 121

Query: 128 EQTNYAPAVPAGSN---VAAEVPPVPVKKKIGINEPQICKNKGCGKTFKEKDNHETACSY 184
           EQ       P  +    +    PPV  K  I IN+PQ+CKNKGCG+TFKE+DNHETACS+
Sbjct: 122 EQIKQTLNTPGQAEEEKIEPLAPPV-QKAVIDINQPQVCKNKGCGQTFKERDNHETACSH 180

Query: 185 HPGPAVFHDRMRGWKCCDIHVKEFDEFMGIPPCTKGWHDAN 225
           HPGPAVFHDR+RGWKCCD+HVKEFDEFM IPPCTKGWH ++
Sbjct: 181 HPGPAVFHDRLRGWKCCDVHVKEFDEFMEIPPCTKGWHSSS 221

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|10177869|dbj|BAB11239.1| RAR1 [Arabidopsis thaliana]

 Score =  315 bits (806), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 151/221 (68%), Positives = 174/221 (78%), Gaps = 8/221 (3%)

Query: 8   ALKRLRCQRIGCNATFTEDDNPEGSCTFHDSGPIFHDGMKEWSCCKRRSHDFSLFLEIPG 67
           A K+L+CQRIGCNA FT+DDNP+GSC FH S P FHDGMKEWSCCK+RSHDFSLFLEIPG
Sbjct: 6   ATKKLQCQRIGCNAMFTDDDNPQGSCQFHASQPFFHDGMKEWSCCKQRSHDFSLFLEIPG 65

Query: 68  CKTGKHTTEKPVLTKPVATSKTPAPAPAPSTTLGSSTPSKELCSRCRQGFFCSDHGSQAK 127
           CKTGKHTTEKPVL K V       P  AP+++  ++  +K+ CSRCRQGFFCSDHGSQ K
Sbjct: 66  CKTGKHTTEKPVLAKSVPKH----PVAAPTSSPDANAATKDSCSRCRQGFFCSDHGSQPK 121

Query: 128 EQTNYAPAVPAGSN---VAAEVPPVPVKKKIGINEPQICKNKGCGKTFKEKDNHETACSY 184
           EQ       P  +    +    PPV  K  I IN+PQ+CKNKGCG+TFKE+DNHETACS+
Sbjct: 122 EQIKQTLNTPGQAEEEKIEPLAPPV-QKAVIDINQPQVCKNKGCGQTFKERDNHETACSH 180

Query: 185 HPGPAVFHDRMRGWKCCDIHVKEFDEFMGIPPCTKGWHDAN 225
           HPGPAVFHDR+RGWKCCD+HVKEFDEFM IPPCTKGWH ++
Sbjct: 181 HPGPAVFHDRLRGWKCCDVHVKEFDEFMEIPPCTKGWHSSS 221

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388505250|gb|AFK40691.1| unknown [Lotus japonicus]

 Score =  312 bits (800), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 153/229 (66%), Positives = 176/229 (76%), Gaps = 13/229 (5%)

Query: 7   DALKRLRCQRIGCNATFTEDDNPEGSCTFHDSGPIFHDGMKEWSCCKRRSHDFSLFLEIP 66
           D   ++RCQRIGC+A F EDDNPEGSC +HD GP+FHDGMKEWSCCK+RSHDFSLFL+IP
Sbjct: 2   DNQVKVRCQRIGCDAVFHEDDNPEGSCQYHDLGPLFHDGMKEWSCCKKRSHDFSLFLQIP 61

Query: 67  GCKTGKHTTEKPVLTKPVATSKTPAPAPAPSTTLGSSTPSKELCSRCRQGFFCSDHGSQA 126
           GCKTGKHTTEK V+  PV  +  P P  APST   +    K+ CSRCRQGFFCSD GSQ+
Sbjct: 62  GCKTGKHTTEKQVIA-PVKKNPVPTPTAAPSTNASA----KDSCSRCRQGFFCSDRGSQS 116

Query: 127 K-------EQTNYAPAVPAGSNVAAEVPPVPVKKKIGINEPQICKNKGCGKTFKEKDNHE 179
           K       +  N A   PA ++   + P  P KK + INEPQ CKNKGCG+TFKEKDNH+
Sbjct: 117 KAVNIVGDKSVNRAGDAPAVNSSIVQAPKPP-KKIVDINEPQTCKNKGCGQTFKEKDNHD 175

Query: 180 TACSYHPGPAVFHDRMRGWKCCDIHVKEFDEFMGIPPCTKGWHDANLSS 228
           TACSYHPGPAVFHDRMRGWKCCD+HVKEFDEF+ IPPCTKGWH+A+  S
Sbjct: 176 TACSYHPGPAVFHDRMRGWKCCDVHVKEFDEFISIPPCTKGWHNADPDS 224

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297795977|ref|XP_002865873.1| hypothetical protein ARALYDRAFT_331546 [Arabidopsis lyrata subsp. lyrata] gi|297311708|gb|EFH42132.1| hypothetical protein ARALYDRAFT_331546 [Arabidopsis lyrata subsp. lyrata]

 Score =  307 bits (787), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 148/221 (66%), Positives = 172/221 (77%), Gaps = 9/221 (4%)

Query: 8   ALKRLRCQRIGCNATFTEDDNPEGSCTFHDSGPIFHDGMKEWSCCKRRSHDFSLFLEIPG 67
           A K+L+CQRIGCNA F++DDNP+GSC FH S P FHDGMKEWSCCK+RSHDFSLFLEIPG
Sbjct: 6   ATKKLQCQRIGCNAMFSDDDNPQGSCQFHAS-PFFHDGMKEWSCCKQRSHDFSLFLEIPG 64

Query: 68  CKTGKHTTEKPVLTKPVATSKTPAPAPAPSTTLGSSTPSKELCSRCRQGFFCSDHGSQAK 127
           CKTGKHTTEKPVL KP        P  AP+++  ++  +K  CSRCRQGFFCSDHGSQ K
Sbjct: 65  CKTGKHTTEKPVLAKPAPKH----PVAAPTSSPDANAATKGSCSRCRQGFFCSDHGSQPK 120

Query: 128 EQTNYAPAVPAGSN---VAAEVPPVPVKKKIGINEPQICKNKGCGKTFKEKDNHETACSY 184
           EQT      P  +    + +  PP+  K  I IN+PQ+C NKGCGKTFKE+DNHETACSY
Sbjct: 121 EQTRQTLNTPVQAEEEKIESLAPPIK-KVVIDINQPQVCNNKGCGKTFKERDNHETACSY 179

Query: 185 HPGPAVFHDRMRGWKCCDIHVKEFDEFMGIPPCTKGWHDAN 225
           HPGP VFHDR++GWKCCD+HV EFDEFM IPPCTKGWH ++
Sbjct: 180 HPGPPVFHDRLKGWKCCDVHVNEFDEFMEIPPCTKGWHSSS 220

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359807618|ref|NP_001241419.1| uncharacterized protein LOC100819671 [Glycine max] gi|255640086|gb|ACU20334.1| unknown [Glycine max] gi|288310306|gb|ADC45392.1| RAR1-2 [Glycine max]

 Score =  307 bits (786), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 151/225 (67%), Positives = 174/225 (77%), Gaps = 14/225 (6%)

Query: 11  RLRCQRIGCNATFTEDDNPEGSCTFHDSGPIFHDGMKEWSCCKRRSHDFSLFLEIPGCKT 70
           ++RCQRIGC+A F+E DNP+GSC +HDSGPIFHDG KEWSCCK+RSHDFSLFLEIPGCKT
Sbjct: 7   KVRCQRIGCDAMFSEADNPDGSCRYHDSGPIFHDGTKEWSCCKKRSHDFSLFLEIPGCKT 66

Query: 71  GKHTTEKPVLTKPVATSKTPAPAPAPSTTLGSSTPSKELCSRCRQGFFCSDHGSQAK--- 127
           GKHTT K V+T PV  +  P+P    ST    +  SKE C RCRQGFFCS+HGSQ+K   
Sbjct: 67  GKHTTVKQVIT-PVKKNTMPSPTAVSST----NASSKESCPRCRQGFFCSNHGSQSKPVN 121

Query: 128 ----EQTNYAPAVPAGSNVAAEVPPVPVKKKIGINEPQICKNKGCGKTFKEKDNHETACS 183
               +  N A  V A +N + E P    KK + INE Q+CKNKGCG+TFKEKDNH+TAC+
Sbjct: 122 VVGDKAANLAGDVSADNNSSVEAPKP--KKIVDINEAQVCKNKGCGQTFKEKDNHDTACN 179

Query: 184 YHPGPAVFHDRMRGWKCCDIHVKEFDEFMGIPPCTKGWHDANLSS 228
           YHPGPAVFHDRMRGWKCCDIHVKEFDEFM IPPC KGWH+A+  S
Sbjct: 180 YHPGPAVFHDRMRGWKCCDIHVKEFDEFMSIPPCAKGWHNADPES 224

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	228
TAIR|locus:2165316	226	PBS2 "PPHB SUSCEPTIBLE 2" [Ara	0.938	0.946	0.65	2.9e-80
UNIPROTKB|Q6EPW7	233	RAR1 "Cysteine and histidine-r	0.899	0.879	0.623	5.7e-75
UNIPROTKB|Q6NUA0	334	chordc1 "Cysteine and histidin	0.293	0.200	0.507	1.6e-31
UNIPROTKB|F1NXZ2	331	CHORDC1 "Cysteine and histidin	0.293	0.202	0.537	2.2e-31
UNIPROTKB|Q5ZML4	331	CHORDC1 "Cysteine and histidin	0.293	0.202	0.537	3.1e-31
UNIPROTKB|Q9UHD1	332	CHORDC1 "Cysteine and histidin	0.293	0.201	0.507	4.4e-31
UNIPROTKB|F1STP1	266	CHORDC1 "Cysteine and histidin	0.293	0.251	0.507	7.7e-31
UNIPROTKB|A9YUB1	332	CHORDC1 "Cysteine and histidin	0.293	0.201	0.507	1.8e-30
MGI|MGI:1914167	331	Chordc1 "cysteine and histidin	0.293	0.202	0.507	1.9e-30
RGD|1304679	331	Chordc1 "cysteine and histidin	0.293	0.202	0.507	1.9e-30

TAIR|locus:2165316 PBS2 "PPHB SUSCEPTIBLE 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 806 (288.8 bits), Expect = 2.9e-80, P = 2.9e-80
 Identities = 143/220 (65%), Positives = 158/220 (71%)

Query:     8 ALKRLRCQRIGCNATFTEDDNPEGSCTFHDSGPIFHDGMKEWSCCKRRSHDFSLFLEIPG 67
             A K+L+CQRIGCNA FT+DDNP+GSC FH SGP FHDGMKEWSCCK+RSHDFSLFLEIPG
Sbjct:     6 ATKKLQCQRIGCNAMFTDDDNPQGSCQFHASGPFFHDGMKEWSCCKQRSHDFSLFLEIPG 65

Query:    68 CKTGKHTTEKPVLXXXXXXXXXXXXXXXXXXXXXXXXXXXELCSRCRQGFFCSDHGSQAK 127
             CKTGKHTTEKPVL                           + CSRCRQGFFCSDHGSQ K
Sbjct:    66 CKTGKHTTEKPVLAKSVPKHPVAAPTSSPDANAATK----DSCSRCRQGFFCSDHGSQPK 121

Query:   128 EQTNYAPAVP--AGSNVAAEXXXXXXXXXIGINEPQICKNKGCGKTFKEKDNHETACSYH 185
             EQ       P  A                I IN+PQ+CKNKGCG+TFKE+DNHETACS+H
Sbjct:   122 EQIKQTLNTPGQAEEEKIEPLAPPVQKAVIDINQPQVCKNKGCGQTFKERDNHETACSHH 181

Query:   186 PGPAVFHDRMRGWKCCDIHVKEFDEFMGIPPCTKGWHDAN 225
             PGPAVFHDR+RGWKCCD+HVKEFDEFM IPPCTKGWH ++
Sbjct:   182 PGPAVFHDRLRGWKCCDVHVKEFDEFMEIPPCTKGWHSSS 221

GO:0005634 "nucleus" evidence=ISM

GO:0009817 "defense response to fungus, incompatible interaction" evidence=IMP

GO:0042742 "defense response to bacterium" evidence=IMP

GO:0006952 "defense response" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0002679 "respiratory burst involved in defense response" evidence=IMP

GO:0009626 "plant-type hypersensitive response" evidence=IMP

GO:0009816 "defense response to bacterium, incompatible interaction" evidence=IMP

GO:0051879 "Hsp90 protein binding" evidence=IPI

GO:0050821 "protein stabilization" evidence=IMP

GO:0008270 "zinc ion binding" evidence=IDA

UNIPROTKB|Q6EPW7 RAR1 "Cysteine and histidine-rich domain-containing protein RAR1" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 756 (271.2 bits), Expect = 5.7e-75, P = 5.7e-75
 Identities = 134/215 (62%), Positives = 155/215 (72%)

Query:    13 RCQRIGCNATFTEDDNPEGSCTFHDSGPIFHDGMKEWSCCKRRSHDFSLFLEIPGCKTGK 72
             RCQRIGC+ATFT+D+NP+GSC +H SGP+FHDGMK+WSCCK++SHDFSLFL IPGCKTGK
Sbjct:    25 RCQRIGCDATFTDDNNPDGSCQYHPSGPMFHDGMKQWSCCKQKSHDFSLFLAIPGCKTGK 84

Query:    73 HTTEKPVLXXXXXXXXXXXXXXXXXXXXXXXXXXXELCSRCRQGFFCSDHGSQAKEQTNY 132
             HTTEKP+                            + CSRCRQGFFCSDHGSQ K Q   
Sbjct:    85 HTTEKPI-----TKAVPTKPSKAVPVQTSKQSVGADTCSRCRQGFFCSDHGSQPKAQI-- 137

Query:   133 APAVPAGSN-VAAEXXXXXX-XXXIGINEPQICKNKGCGKTFKEKDNHETACSYHPGPAV 190
              P   + +N V  E          I +NEP++CKNKGCGKT+KEKDNH+ AC YHPGPAV
Sbjct:   138 -PTATSDTNMVPVEKPAVPPPKKKIDLNEPRVCKNKGCGKTYKEKDNHDEACDYHPGPAV 196

Query:   191 FHDRMRGWKCCDIHVKEFDEFMGIPPCTKGWHDAN 225
             F DR+RGWKCCDIHVKEFDEFM IPPCTKGWH+A+
Sbjct:   197 FRDRIRGWKCCDIHVKEFDEFMEIPPCTKGWHNAD 231

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0017048 "Rho GTPase binding" evidence=IPI

GO:0042742 "defense response to bacterium" evidence=IMP

GO:0050832 "defense response to fungus" evidence=IMP

GO:0051879 "Hsp90 protein binding" evidence=IDA

UNIPROTKB|Q6NUA0 chordc1 "Cysteine and histidine-rich domain-containing protein 1" [Xenopus laevis (taxid:8355)]

 Score = 204 (76.9 bits), Expect = 1.6e-31, Sum P(2) = 1.6e-31
 Identities = 34/67 (50%), Positives = 42/67 (62%)

Query:    12 LRCQRIGCNATFTEDDNPEGSCTFHDSGPIFHDGMKEWSCCKRRSHDFSLFLEIPGCKTG 71
             L C   GC   +  + N + SCT+H   P+FHD +K WSCCKRR+ DFS FL I GC  G
Sbjct:     3 LLCYNRGCGQRYDPEGNSDDSCTYHPGVPVFHDALKGWSCCKRRTTDFSDFLSIVGCTKG 62

Query:    72 KHTTEKP 78
             +H  EKP
Sbjct:    63 QHNNEKP 69

GO:0010824 "regulation of centrosome duplication" evidence=ISS

UNIPROTKB|F1NXZ2 CHORDC1 "Cysteine and histidine-rich domain-containing protein 1" [Gallus gallus (taxid:9031)]

 Score = 209 (78.6 bits), Expect = 2.2e-31, Sum P(2) = 2.2e-31
 Identities = 36/67 (53%), Positives = 42/67 (62%)

Query:    12 LRCQRIGCNATFTEDDNPEGSCTFHDSGPIFHDGMKEWSCCKRRSHDFSLFLEIPGCKTG 71
             L C   GC   F  + N E SCT+H   P+FHD +K WSCCKRR+ DFS FL I GC  G
Sbjct:     3 LLCYNRGCGQRFDPETNTEDSCTYHPGVPVFHDALKGWSCCKRRTTDFSDFLSIAGCTKG 62

Query:    72 KHTTEKP 78
              H +EKP
Sbjct:    63 LHNSEKP 69

GO:0008270 "zinc ion binding" evidence=IEA

GO:0010824 "regulation of centrosome duplication" evidence=IEA

GO:0051879 "Hsp90 protein binding" evidence=IEA

GO:0061077 "chaperone-mediated protein folding" evidence=IEA

GO:0080134 "regulation of response to stress" evidence=IEA

GO:2000299 "negative regulation of Rho-dependent protein serine/threonine kinase activity" evidence=IEA

UNIPROTKB|Q5ZML4 CHORDC1 "Cysteine and histidine-rich domain-containing protein 1" [Gallus gallus (taxid:9031)]

 Score = 208 (78.3 bits), Expect = 3.1e-31, Sum P(2) = 3.1e-31
 Identities = 36/67 (53%), Positives = 42/67 (62%)

Query:    12 LRCQRIGCNATFTEDDNPEGSCTFHDSGPIFHDGMKEWSCCKRRSHDFSLFLEIPGCKTG 71
             L C   GC   F  + N E SCT+H   P+FHD +K WSCCKRR+ DFS FL I GC  G
Sbjct:     3 LLCYNRGCGQRFDPETNTEDSCTYHPGVPVFHDALKGWSCCKRRTTDFSDFLSIVGCTKG 62

Query:    72 KHTTEKP 78
              H +EKP
Sbjct:    63 LHNSEKP 69

GO:0046872 "metal ion binding" evidence=IEA

GO:0010824 "regulation of centrosome duplication" evidence=ISS

UNIPROTKB|Q9UHD1 CHORDC1 "Cysteine and histidine-rich domain-containing protein 1" [Homo sapiens (taxid:9606)]

 Score = 206 (77.6 bits), Expect = 4.4e-31, Sum P(2) = 4.4e-31
 Identities = 34/67 (50%), Positives = 43/67 (64%)

Query:    12 LRCQRIGCNATFTEDDNPEGSCTFHDSGPIFHDGMKEWSCCKRRSHDFSLFLEIPGCKTG 71
             L C   GC   F  + N + +CT+H   P+FHD +K WSCCKRR+ DFS FL I GC  G
Sbjct:     3 LLCYNRGCGQRFDPETNSDDACTYHPGVPVFHDALKGWSCCKRRTTDFSDFLSIVGCTKG 62

Query:    72 KHTTEKP 78
             +H +EKP
Sbjct:    63 RHNSEKP 69

GO:0006950 "response to stress" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0010824 "regulation of centrosome duplication" evidence=IEA

GO:2000299 "negative regulation of Rho-dependent protein serine/threonine kinase activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0051879 "Hsp90 protein binding" evidence=IPI

GO:0061077 "chaperone-mediated protein folding" evidence=ISS

GO:0080134 "regulation of response to stress" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|F1STP1 CHORDC1 "Cysteine and histidine-rich domain-containing protein 1" [Sus scrofa (taxid:9823)]

 Score = 207 (77.9 bits), Expect = 7.7e-31, Sum P(2) = 7.7e-31
 Identities = 34/67 (50%), Positives = 43/67 (64%)

Query:    12 LRCQRIGCNATFTEDDNPEGSCTFHDSGPIFHDGMKEWSCCKRRSHDFSLFLEIPGCKTG 71
             L C   GC   F  + N + +CT+H   P+FHD +K WSCCKRR+ DFS FL I GC  G
Sbjct:     3 LLCYNRGCGQRFDPETNSDDACTYHPGVPVFHDALKGWSCCKRRTTDFSDFLSIAGCTKG 62

Query:    72 KHTTEKP 78
             +H +EKP
Sbjct:    63 RHNSEKP 69

GO:2000299 "negative regulation of Rho-dependent protein serine/threonine kinase activity" evidence=IEA

GO:0080134 "regulation of response to stress" evidence=IEA

GO:0061077 "chaperone-mediated protein folding" evidence=IEA

GO:0051879 "Hsp90 protein binding" evidence=IEA

GO:0010824 "regulation of centrosome duplication" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|A9YUB1 CHORDC1 "Cysteine and histidine-rich domain-containing protein 1" [Sus scrofa (taxid:9823)]

 Score = 207 (77.9 bits), Expect = 1.8e-30, Sum P(2) = 1.8e-30
 Identities = 34/67 (50%), Positives = 43/67 (64%)

Query:    12 LRCQRIGCNATFTEDDNPEGSCTFHDSGPIFHDGMKEWSCCKRRSHDFSLFLEIPGCKTG 71
             L C   GC   F  + N + +CT+H   P+FHD +K WSCCKRR+ DFS FL I GC  G
Sbjct:     3 LLCYNRGCGQRFDPETNSDDACTYHPGVPVFHDALKGWSCCKRRTTDFSDFLSIAGCTKG 62

Query:    72 KHTTEKP 78
             +H +EKP
Sbjct:    63 RHNSEKP 69

GO:0046872 "metal ion binding" evidence=IEA

GO:0006950 "response to stress" evidence=IEA

MGI|MGI:1914167 Chordc1 "cysteine and histidine-rich domain (CHORD)-containing, zinc-binding protein 1" [Mus musculus (taxid:10090)]

 Score = 205 (77.2 bits), Expect = 1.9e-30, Sum P(2) = 1.9e-30
 Identities = 34/67 (50%), Positives = 43/67 (64%)

Query:    12 LRCQRIGCNATFTEDDNPEGSCTFHDSGPIFHDGMKEWSCCKRRSHDFSLFLEIPGCKTG 71
             L C   GC   F  + N + +CT+H   P+FHD +K WSCCKRR+ DFS FL I GC  G
Sbjct:     3 LLCYNRGCGQRFDPEANSDDACTYHPGVPVFHDALKGWSCCKRRTTDFSDFLSIVGCTKG 62

Query:    72 KHTTEKP 78
             +H +EKP
Sbjct:    63 RHNSEKP 69

GO:0005509 "calcium ion binding" evidence=IDA

GO:0006950 "response to stress" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IDA

GO:0010824 "regulation of centrosome duplication" evidence=IMP

GO:0046872 "metal ion binding" evidence=IEA

GO:0051879 "Hsp90 protein binding" evidence=ISO

GO:0061077 "chaperone-mediated protein folding" evidence=IDA

GO:0080134 "regulation of response to stress" evidence=IDA

GO:2000299 "negative regulation of Rho-dependent protein serine/threonine kinase activity" evidence=IDA

RGD|1304679 Chordc1 "cysteine and histidine-rich domain (CHORD)-containing 1" [Rattus norvegicus (taxid:10116)]

 Score = 205 (77.2 bits), Expect = 1.9e-30, Sum P(2) = 1.9e-30
 Identities = 34/67 (50%), Positives = 43/67 (64%)

Query:    12 LRCQRIGCNATFTEDDNPEGSCTFHDSGPIFHDGMKEWSCCKRRSHDFSLFLEIPGCKTG 71
             L C   GC   F  + N + +CT+H   P+FHD +K WSCCKRR+ DFS FL I GC  G
Sbjct:     3 LLCYNRGCGQRFDPEANADDACTYHPGVPVFHDALKGWSCCKRRTTDFSDFLSIVGCTKG 62

Query:    72 KHTTEKP 78
             +H +EKP
Sbjct:    63 RHNSEKP 69

GO:0006950 "response to stress" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA;ISO

GO:0010824 "regulation of centrosome duplication" evidence=ISO;ISS

GO:0051879 "Hsp90 protein binding" evidence=IEA;ISO

GO:0061077 "chaperone-mediated protein folding" evidence=ISO;ISS

GO:0080134 "regulation of response to stress" evidence=ISO;ISS

GO:2000299 "negative regulation of Rho-dependent protein serine/threonine kinase activity" evidence=IEA;ISO

GO:0005509 "calcium ion binding" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q6EPW7	RAR1_ORYSJ	No assigned EC number	0.6428	0.8771	0.8583	yes	no
Q9SE33	RAR1_ARATH	No assigned EC number	0.6877	0.9342	0.9424	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	228
pfam04968	65	pfam04968, CHORD, CHORD	3e-32
pfam04968	65	pfam04968, CHORD, CHORD	2e-29

>gnl|CDD|203134 pfam04968, CHORD, CHORD

 Score =  111 bits (280), Expect = 3e-32
 Identities = 37/65 (56%), Positives = 43/65 (66%)

Query: 159 EPQICKNKGCGKTFKEKDNHETACSYHPGPAVFHDRMRGWKCCDIHVKEFDEFMGIPPCT 218
               CKNKGCGKT+K  +N E AC YHPG  VFH+ M+GW CC   V +FDEF+ IP CT
Sbjct: 1   MGTKCKNKGCGKTYKGPENDEEACVYHPGVPVFHEGMKGWSCCKKRVLDFDEFLKIPGCT 60

Query: 219 KGWHD 223
            G H 
Sbjct: 61  TGKHS 65

CHORD represents a Zn binding domain. Silencing of the C. elegans CHORD-containing gene results in semisterility and embryo lethality, suggesting an essential function of the wild-type gene in nematode development. Length = 65

>gnl|CDD|203134 pfam04968, CHORD, CHORD

 Score =  104 bits (261), Expect = 2e-29
 Identities = 32/63 (50%), Positives = 43/63 (68%)

Query: 12 LRCQRIGCNATFTEDDNPEGSCTFHDSGPIFHDGMKEWSCCKRRSHDFSLFLEIPGCKTG 71
           +C+  GC  T+   +N E +C +H   P+FH+GMK WSCCK+R  DF  FL+IPGC TG
Sbjct: 3  TKCKNKGCGKTYKGPENDEEACVYHPGVPVFHEGMKGWSCCKKRVLDFDEFLKIPGCTTG 62

Query: 72 KHT 74
          KH+
Sbjct: 63 KHS 65

CHORD represents a Zn binding domain. Silencing of the C. elegans CHORD-containing gene results in semisterility and embryo lethality, suggesting an essential function of the wild-type gene in nematode development. Length = 65

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	228
KOG1667	320	consensus Zn2+-binding protein Melusin/RAR1, conta	100.0
PF04968	64	CHORD: CHORD ; InterPro: IPR007051 Cysteine- and h	100.0
PF04968	64	CHORD: CHORD ; InterPro: IPR007051 Cysteine- and h	100.0
KOG1667	320	consensus Zn2+-binding protein Melusin/RAR1, conta	99.93
smart00107	36	BTK Bruton's tyrosine kinase Cys-rich motif. Zinc-	95.98
smart00107	36	BTK Bruton's tyrosine kinase Cys-rich motif. Zinc-	93.54
PF00779	32	BTK: BTK motif; InterPro: IPR001562 The Btk-type z	92.48
PF00779	32	BTK: BTK motif; InterPro: IPR001562 The Btk-type z	90.99
PF11822	317	DUF3342: Domain of unknown function (DUF3342); Int	89.06
PF11822	317	DUF3342: Domain of unknown function (DUF3342); Int	82.13

>KOG1667 consensus Zn2+-binding protein Melusin/RAR1, contains CHORD domain [General function prediction only]

Probab=100.00  E-value=2.4e-70  Score=488.84  Aligned_cols=199  Identities=32%  Similarity=0.669  Sum_probs=149.9

Q ss_pred             ccccccCCCCceeCCCCCCCCCccccCCCCcccCCCcccccCCCcccChhhhcCCCCCCcccCCCCCCCCC-CCCCCCC-
Q 027086           11 RLRCQRIGCNATFTEDDNPEGSCTFHDSGPIFHDGMKEWSCCKRRSHDFSLFLEIPGCKTGKHTTEKPVLT-KPVATSK-   88 (228)
Q Consensus        11 ~~~C~n~GCg~~f~~~~N~~~~C~~HpG~PvFHd~~K~WsCC~k~~~df~eFl~i~gCt~G~H~~~~P~~~-~p~~~~~-   88 (228)
                      +++|||+||||.|||..|.+++|+||||.|+|||++||||||+||++||+|||+|+|||.|+|+++||+++ +|+.++. 
T Consensus         1 ~l~CynkGCGq~FDP~tN~deaC~~HPG~P~FHDA~KgWsCC~kkstDFseflnikGCT~gkHsneKppe~~kp~~~et~   80 (320)
T KOG1667|consen    1 KLQCYNKGCGQLFDPKTNDDEACTYHPGVPYFHDAYKGWSCCDKKSTDFSEFLNIKGCTRGKHSNEKPPEPKKPEVKETR   80 (320)
T ss_pred             CceeeccCcccccCCCCCCccccccCCCCcchhhhhccccccccccccHHHhhccccccccccccCCCCCCCCCcccccc
Confidence            47899999999999999999999999999999999999999999999999999999999999999999987 3333221 


Q ss_pred             -CCCCCCCCC----CcCCCCCCchhhhhhccCCccccCCCCccccccccCCCCCCCCCCCCC-CCCCCCccccCCCCCCc
Q 027086           89 -TPAPAPAPS----TTLGSSTPSKELCSRCRQGFFCSDHGSQAKEQTNYAPAVPAGSNVAAE-VPPVPVKKKIGINEPQI  162 (228)
Q Consensus        89 -~~~~~~~~~----~~~~~~p~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~i~~g~~  162 (228)
                       .+...+...    +.+..+|.+..             ...+.. -..+.+.++++++.++. +.++  ....+|.+|++
T Consensus        81 ~ekkel~~v~~~~~e~~~~~pkd~~-------------~ik~~~-~~~~tp~isaale~~l~~kkea--~q~~~I~iGts  144 (320)
T KOG1667|consen   81 PEKKELVEVWKGLNESGKLDPKDAT-------------PIKQNL-NVEVTPGISAALEKALKEKKEA--AQSADIQIGTS  144 (320)
T ss_pred             cccccceeechhhHhhCcCCCCccc-------------cccccc-CcccCcchhHHHHHHHHhcchh--hcCcCceeCCc
Confidence             111111000    00101111000             000000 00122233444444433 1111  12345999999


Q ss_pred             cccCCCCceeecCCCCCCCceecCCCccccCCCCeeecCCccccchhhhcCCCCCccccCCCC
Q 027086          163 CKNKGCGKTFKEKDNHETACSYHPGPAVFHDRMRGWKCCDIHVKEFDEFMGIPPCTKGWHDAN  225 (228)
Q Consensus       163 C~n~GC~~~~~~~~~~~~~C~yHpG~PvFHeg~K~WsCC~~k~~dFd~Fl~i~gC~~G~H~~~  225 (228)
                      |+|+||..+|++.+|..+.|.||||+|||||||||||||.+||+||.+||+|+|||.|+|.|.
T Consensus       145 CkN~GCs~~fqG~esd~~~CtyHpGapiFHEGMKyWSCC~kkTsdF~aFlaQ~GCt~GeH~w~  207 (320)
T KOG1667|consen  145 CKNNGCSTEFQGSESDKENCTYHPGAPIFHEGMKYWSCCNKKTSDFGAFLAQVGCTSGEHKWR  207 (320)
T ss_pred             ccCCCcceeeeccccccccceeCCCChhhhccchhhhhcccccccHHHHhhhcCccccchhhh
Confidence            999999999999999999999999999999999999999999999999999999999999993

>PF04968 CHORD: CHORD ; InterPro: IPR007051 Cysteine- and histidine-rich domains (CHORDs) are 60-amino acid modules that bind two zinc ions

Probab=100.00  E-value=1.2e-36  Score=222.24  Aligned_cols=64  Identities=56%  Similarity=1.280  Sum_probs=48.5

Q ss_pred             CCccccCCCCceeecCCCCCCCceecCCCccccCCCCeeecCCccccchhhhcCCCCCccccCC
Q 027086          160 PQICKNKGCGKTFKEKDNHETACSYHPGPAVFHDRMRGWKCCDIHVKEFDEFMGIPPCTKGWHD  223 (228)
Q Consensus       160 g~~C~n~GC~~~~~~~~~~~~~C~yHpG~PvFHeg~K~WsCC~~k~~dFd~Fl~i~gC~~G~H~  223 (228)
                      +++|+|+||+++|.+++|.+++|+||||.|||||||||||||++||+|||+||+||||++|+|.
T Consensus         1 ~~~C~n~GC~~~y~~~~n~~~~C~yHpG~PvFHeg~K~WsCC~~k~~dF~~Fl~i~GC~~G~H~   64 (64)
T PF04968_consen    1 GTKCKNKGCGKEYDEEENDDGACHYHPGPPVFHEGMKGWSCCKKKVSDFDEFLKIPGCTTGKHS   64 (64)
T ss_dssp             -EE--SCTT--EE-TTT--TTTEEEBSS-EEEETTEEEETTTTEEESSHHHHTT---SCEE---
T ss_pred             CCceECCCCCCEECCCCCCCCceEecCCCceecCCceEEecCCCEeeCHHHHhcCCCCcccCCC
Confidence            5789999999999999999999999999999999999999999999999999999999999995

They are usually arranged in tandem and are found in all tested eukaryotes, with the exception of yeast, where they are involved in processes ranging from pressure sensing in the heart to maintenance of diploidy in fungi, and exhibit distinct protein-protein interaction specificity. Six cysteine and two histidine residues are invariant within the CHORD domain. Three other residues are also invariant and some positions are confined to positive, negative, or aromatic amino acids [, ]. Silencing of the Caenorhabditis elegansCHORD-containing gene results in semisterility and embryo lethality, suggesting an essential function of the wild-type gene in nematode development. The CHORD domain is sometimes found N-terminal to the CS domain, IPR007052 from INTERPRO, in metazoan proteins, but occurs separately from the CS domain in plants. This association is thought to be indicative of an functional interaction between CS and CHORD domains []. ; PDB: 2XCM_E 2YRT_A.

>PF04968 CHORD: CHORD ; InterPro: IPR007051 Cysteine- and histidine-rich domains (CHORDs) are 60-amino acid modules that bind two zinc ions

Probab=100.00  E-value=4.4e-36  Score=219.31  Aligned_cols=64  Identities=48%  Similarity=1.224  Sum_probs=48.4

Q ss_pred             ccccccCCCCceeCCCCCCCCCccccCCCCcccCCCcccccCCCcccChhhhcCCCCCCcccCC
Q 027086           11 RLRCQRIGCNATFTEDDNPEGSCTFHDSGPIFHDGMKEWSCCKRRSHDFSLFLEIPGCKTGKHT   74 (228)
Q Consensus        11 ~~~C~n~GCg~~f~~~~N~~~~C~~HpG~PvFHd~~K~WsCC~k~~~df~eFl~i~gCt~G~H~   74 (228)
                      +++|+|.||+++|++++|.+++|+||||.||||||||+||||+++++||++||+|+||++|+|+
T Consensus         1 ~~~C~n~GC~~~y~~~~n~~~~C~yHpG~PvFHeg~K~WsCC~~k~~dF~~Fl~i~GC~~G~H~   64 (64)
T PF04968_consen    1 GTKCKNKGCGKEYDEEENDDGACHYHPGPPVFHEGMKGWSCCKKKVSDFDEFLKIPGCTTGKHS   64 (64)
T ss_dssp             -EE--SCTT--EE-TTT--TTTEEEBSS-EEEETTEEEETTTTEEESSHHHHTT---SCEE---
T ss_pred             CCceECCCCCCEECCCCCCCCceEecCCCceecCCceEEecCCCEeeCHHHHhcCCCCcccCCC
Confidence            4689999999999999999999999999999999999999999999999999999999999996

They are usually arranged in tandem and are found in all tested eukaryotes, with the exception of yeast, where they are involved in processes ranging from pressure sensing in the heart to maintenance of diploidy in fungi, and exhibit distinct protein-protein interaction specificity. Six cysteine and two histidine residues are invariant within the CHORD domain. Three other residues are also invariant and some positions are confined to positive, negative, or aromatic amino acids [, ]. Silencing of the Caenorhabditis elegansCHORD-containing gene results in semisterility and embryo lethality, suggesting an essential function of the wild-type gene in nematode development. The CHORD domain is sometimes found N-terminal to the CS domain, IPR007052 from INTERPRO, in metazoan proteins, but occurs separately from the CS domain in plants. This association is thought to be indicative of an functional interaction between CS and CHORD domains []. ; PDB: 2XCM_E 2YRT_A.

>KOG1667 consensus Zn2+-binding protein Melusin/RAR1, contains CHORD domain [General function prediction only]

Probab=99.93  E-value=2e-27  Score=213.30  Aligned_cols=78  Identities=38%  Similarity=0.877  Sum_probs=74.5

Q ss_pred             CCCCcccccccccccCCCCceeCCCCCCCCCccccCCCCcccCCCcccccCCCcccChhhhcCCCCCCcccCCCCCCC
Q 027086            2 ASQNDDALKRLRCQRIGCNATFTEDDNPEGSCTFHDSGPIFHDGMKEWSCCKRRSHDFSLFLEIPGCKTGKHTTEKPV   79 (228)
Q Consensus         2 ~~~~~~~~~~~~C~n~GCg~~f~~~~N~~~~C~~HpG~PvFHd~~K~WsCC~k~~~df~eFl~i~gCt~G~H~~~~P~   79 (228)
                      |.|.++|.++..|+|.||..+|+..++..+.|.||||+||||||||+||||+++++||..||+++|||.|+|-|.+-.
T Consensus       133 a~q~~~I~iGtsCkN~GCs~~fqG~esd~~~CtyHpGapiFHEGMKyWSCC~kkTsdF~aFlaQ~GCt~GeH~w~k~~  210 (320)
T KOG1667|consen  133 AAQSADIQIGTSCKNNGCSTEFQGSESDKENCTYHPGAPIFHEGMKYWSCCNKKTSDFGAFLAQVGCTSGEHKWRKNE  210 (320)
T ss_pred             hhcCcCceeCCcccCCCcceeeeccccccccceeCCCChhhhccchhhhhcccccccHHHHhhhcCccccchhhhccC
Confidence            457788999999999999999999999999999999999999999999999999999999999999999999999843

>smart00107 BTK Bruton's tyrosine kinase Cys-rich motif

Probab=95.98  E-value=0.0045  Score=40.89  Aligned_cols=27  Identities=37%  Similarity=0.864  Sum_probs=22.0

Q ss_pred             eecCCCccccCCCCeeecCCccccchhhhcCCCCCcc
Q 027086          183 SYHPGPAVFHDRMRGWKCCDIHVKEFDEFMGIPPCTK  219 (228)
Q Consensus       183 ~yHpG~PvFHeg~K~WsCC~~k~~dFd~Fl~i~gC~~  219 (228)
                      .||||.  |-+|+  |+||+.      .....+||+.
T Consensus         7 ~yHP~~--~~~G~--W~CC~q------~~k~a~GC~~   33 (36)
T smart00107        7 KYHPSF--WVDGK--WLCCQQ------SEKNAPGCTP   33 (36)
T ss_pred             ccCCCc--eeCCe--EccCCC------cCcCCCCCcc
Confidence            599998  76765  999987      6778899975

Zinc-binding motif containing conserved cysteines and a histidine. Always found C-terminal to PH domains (but not all PH domains are followed by BTK motifs). The crystal structure shows this motif packs against the PH domain. The PH+Btk module pair has been called the Tec homology (TH) region.

>smart00107 BTK Bruton's tyrosine kinase Cys-rich motif

Probab=93.54  E-value=0.067  Score=35.31  Aligned_cols=27  Identities=37%  Similarity=0.999  Sum_probs=20.3

Q ss_pred             cccCCCCcccCCCcccccCCCcccChhhhcCCCCCCc
Q 027086           34 TFHDSGPIFHDGMKEWSCCKRRSHDFSLFLEIPGCKT   70 (228)
Q Consensus        34 ~~HpG~PvFHd~~K~WsCC~k~~~df~eFl~i~gCt~   70 (228)
                      .||||.  |-+|.  |+||+...      ...+||+.
T Consensus         7 ~yHP~~--~~~G~--W~CC~q~~------k~a~GC~~   33 (36)
T smart00107        7 KYHPSF--WVDGK--WLCCQQSE------KNAPGCTP   33 (36)
T ss_pred             ccCCCc--eeCCe--EccCCCcC------cCCCCCcc
Confidence            599997  66665  99999632      46788874

Zinc-binding motif containing conserved cysteines and a histidine. Always found C-terminal to PH domains (but not all PH domains are followed by BTK motifs). The crystal structure shows this motif packs against the PH domain. The PH+Btk module pair has been called the Tec homology (TH) region.

>PF00779 BTK: BTK motif; InterPro: IPR001562 The Btk-type zinc finger or Btk motif (BM) is a conserved zinc-binding motif containing conserved cysteines and a histidine that is present in certain eukaryotic signalling proteins

Probab=92.48  E-value=0.054  Score=34.94  Aligned_cols=27  Identities=30%  Similarity=0.949  Sum_probs=15.5

Q ss_pred             cccCCCCcccCCCcccccCCCcccChhhhcCCCCCCc
Q 027086           34 TFHDSGPIFHDGMKEWSCCKRRSHDFSLFLEIPGCKT   70 (228)
Q Consensus        34 ~~HpG~PvFHd~~K~WsCC~k~~~df~eFl~i~gCt~   70 (228)
                      .||||.  |-  ...|+||+...      ...+||+.
T Consensus         2 ~yHPg~--~~--~g~W~CC~q~~------k~a~GC~~   28 (32)
T PF00779_consen    2 KYHPGA--WR--GGKWLCCKQTD------KSAPGCQP   28 (32)
T ss_dssp             EE-SS---EE--TTCESSSS-SS------TTS--SEE
T ss_pred             CcCCCc--cc--CCcCcCCCCcC------cCCCCCcc
Confidence            599997  44  45799999653      45788874

The motif is named after Bruton's tyrosine kinase (Btk), an enzyme which is essential for B cell maturation in humans and mice [, ]. Btk is a member of the Tec family of protein tyrosine kinases (PTK). These kinases contain a conserved Tec homology (TH) domain between the N-terminal pleckstrin homology (PH) domain (IPR001849 from INTERPRO) and the Src homology 3 (SH3) domain (IPR001452 from INTERPRO). The N-terminal of the TH domain is highly conserved and known as the Btf motif, while the C-terminal region of the TH domain contains a proline-rich region (PRR). The Btk motif contains a conserved His and three Cys residues that form a zinc finger (although these differ from known zinc finger topologies), while PRRs are commonly involved in protein-protein interactions, including interactions with G proteins [, ]. The TH domain may be of functional importance in various signalling pathways in different species []. A complete TH domain, containing both the Btk and PRR regions, has not been found outside the Tec family; however, the Btk motif on its own does occur in other proteins, usually C-terminal to a PH domain (note that although a Btk motif always occurs C-terminal to a PH domain, not all PH domains are followed by a Btk motif). The crystal structures of Btk show that the Btk-type zinc finger has a globular core, formed by a long loop which is held together by a zinc ion, and that the Btk motif is packed against the PH domain []. The zinc-binding residues are a histidine and three cysteines, which are fully conserved in the Btk motif []. Proteins known to contain a Btk-type zinc finger include: Mammalian Bruton's tyrosine kinase (Btk), a protein tyrosine kinase involved in modulation of diverse cellular processes. Mutations affecting Btk are the cause of X-linked agammaglobulinemia (XLA) in humans and X-linked immunodeficiency in mice. Mammalian Tec, Bmx, and Itk proteins, which are tyrosine protein kinases of the Tec subfamily. Drosophila tyrosine-protein kinase Btk29A, which is required for the development of proper ring canals and of male genitalia and required for adult survival. Mammalian Ras GTPase-activating proteins (RasGAP), which regulate the activation of inactive GDP-bound Ras by converting GDP to GTP. ; GO: 0035556 intracellular signal transduction; PDB: 2E6I_A 2YS2_A 2Z0P_A 1B55_A 1BTK_B 1BWN_A.

>PF00779 BTK: BTK motif; InterPro: IPR001562 The Btk-type zinc finger or Btk motif (BM) is a conserved zinc-binding motif containing conserved cysteines and a histidine that is present in certain eukaryotic signalling proteins

Probab=90.99  E-value=0.14  Score=33.05  Aligned_cols=27  Identities=33%  Similarity=0.923  Sum_probs=16.6

Q ss_pred             eecCCCccccCCCCeeecCCccccchhhhcCCCCCcc
Q 027086          183 SYHPGPAVFHDRMRGWKCCDIHVKEFDEFMGIPPCTK  219 (228)
Q Consensus       183 ~yHpG~PvFHeg~K~WsCC~~k~~dFd~Fl~i~gC~~  219 (228)
                      .||||.  |-+|  .|+||..      .-...+||+.
T Consensus         2 ~yHPg~--~~~g--~W~CC~q------~~k~a~GC~~   28 (32)
T PF00779_consen    2 KYHPGA--WRGG--KWLCCKQ------TDKSAPGCQP   28 (32)
T ss_dssp             EE-SS---EETT--CESSSS-------SSTTS--SEE
T ss_pred             CcCCCc--ccCC--cCcCCCC------cCcCCCCCcc
Confidence            599997  6544  6999986      4677889875

The motif is named after Bruton's tyrosine kinase (Btk), an enzyme which is essential for B cell maturation in humans and mice [, ]. Btk is a member of the Tec family of protein tyrosine kinases (PTK). These kinases contain a conserved Tec homology (TH) domain between the N-terminal pleckstrin homology (PH) domain (IPR001849 from INTERPRO) and the Src homology 3 (SH3) domain (IPR001452 from INTERPRO). The N-terminal of the TH domain is highly conserved and known as the Btf motif, while the C-terminal region of the TH domain contains a proline-rich region (PRR). The Btk motif contains a conserved His and three Cys residues that form a zinc finger (although these differ from known zinc finger topologies), while PRRs are commonly involved in protein-protein interactions, including interactions with G proteins [, ]. The TH domain may be of functional importance in various signalling pathways in different species []. A complete TH domain, containing both the Btk and PRR regions, has not been found outside the Tec family; however, the Btk motif on its own does occur in other proteins, usually C-terminal to a PH domain (note that although a Btk motif always occurs C-terminal to a PH domain, not all PH domains are followed by a Btk motif). The crystal structures of Btk show that the Btk-type zinc finger has a globular core, formed by a long loop which is held together by a zinc ion, and that the Btk motif is packed against the PH domain []. The zinc-binding residues are a histidine and three cysteines, which are fully conserved in the Btk motif []. Proteins known to contain a Btk-type zinc finger include: Mammalian Bruton's tyrosine kinase (Btk), a protein tyrosine kinase involved in modulation of diverse cellular processes. Mutations affecting Btk are the cause of X-linked agammaglobulinemia (XLA) in humans and X-linked immunodeficiency in mice. Mammalian Tec, Bmx, and Itk proteins, which are tyrosine protein kinases of the Tec subfamily. Drosophila tyrosine-protein kinase Btk29A, which is required for the development of proper ring canals and of male genitalia and required for adult survival. Mammalian Ras GTPase-activating proteins (RasGAP), which regulate the activation of inactive GDP-bound Ras by converting GDP to GTP. ; GO: 0035556 intracellular signal transduction; PDB: 2E6I_A 2YS2_A 2Z0P_A 1B55_A 1BTK_B 1BWN_A.

>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised

Probab=89.06  E-value=0.24  Score=46.64  Aligned_cols=47  Identities=30%  Similarity=0.734  Sum_probs=39.3

Q ss_pred             CccccCCCCceeecCCCCCCCceecCCCccccCCCC---------eeecCCccccchh
Q 027086          161 QICKNKGCGKTFKEKDNHETACSYHPGPAVFHDRMR---------GWKCCDIHVKEFD  209 (228)
Q Consensus       161 ~~C~n~GC~~~~~~~~~~~~~C~yHpG~PvFHeg~K---------~WsCC~~k~~dFd  209 (228)
                      ..|++  |++.|.-.+-....|.|||-.++|=++..         .+.||+.++|-||
T Consensus       262 l~Csr--C~q~F~~~el~~~~C~yHp~~~~~~~~~~~~~~~~~~G~YpCC~q~~~rfe  317 (317)
T PF11822_consen  262 LYCSR--CNQVFPCSELSTHHCRYHPESPVFPDNASSEDSPGLLGWYPCCGQKVYRFE  317 (317)
T ss_pred             EECcc--CCcEeeHHHcccccccCCCCCcccCCcccccCcccceeeecccCCccccCC
Confidence            37887  99999988877678999999999987432         4679999999986

This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.

>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised

Probab=82.13  E-value=0.83  Score=43.10  Aligned_cols=47  Identities=28%  Similarity=0.718  Sum_probs=38.2

Q ss_pred             cccccCCCCceeCCCCCCCCCccccCCCCcccCCC---------cccccCCCcccChh
Q 027086           12 LRCQRIGCNATFTEDDNPEGSCTFHDSGPIFHDGM---------KEWSCCKRRSHDFS   60 (228)
Q Consensus        12 ~~C~n~GCg~~f~~~~N~~~~C~~HpG~PvFHd~~---------K~WsCC~k~~~df~   60 (228)
                      +.|  .-|++.|.-.+-....|.|||-.++|-++.         -.+.||+.+++-||
T Consensus       262 l~C--srC~q~F~~~el~~~~C~yHp~~~~~~~~~~~~~~~~~~G~YpCC~q~~~rfe  317 (317)
T PF11822_consen  262 LYC--SRCNQVFPCSELSTHHCRYHPESPVFPDNASSEDSPGLLGWYPCCGQKVYRFE  317 (317)
T ss_pred             EEC--ccCCcEeeHHHcccccccCCCCCcccCCcccccCcccceeeecccCCccccCC
Confidence            457  579999988876666899999999999843         23679999999886

This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	228
2xcm_E	74	Complex Of Hsp90 N-Terminal, Sgt1 Cs And Rar1 Chord		2e-33
2yrt_A	75	Solution Structure Of The Chord Domain Of Human Cho		4e-14
2yrt_A	75	Solution Structure Of The Chord Domain Of Human Cho		8e-14

>pdb|2XCM|E Chain E, Complex Of Hsp90 N-Terminal, Sgt1 Cs And Rar1 Chord2 Domain Length = 74

Iteration: 1
 Score =  138 bits (348), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 59/71 (83%), Positives = 68/71 (95%)
Query: 155 IGINEPQICKNKGCGKTFKEKDNHETACSYHPGPAVFHDRMRGWKCCDIHVKEFDEFMGI 214
           I IN+PQ+CKNKGCG+TFKE+DNHETACS+HPGPAVFHDR+RGWKCCD+HVKEFDEFM I
Sbjct: 4   IDINQPQVCKNKGCGQTFKERDNHETACSHHPGPAVFHDRLRGWKCCDVHVKEFDEFMEI 63
Query: 215 PPCTKGWHDAN 225
           PPCTKGWH ++
Sbjct: 64  PPCTKGWHSSS 74

>pdb|2YRT|A Chain A, Solution Structure Of The Chord Domain Of Human Chord- Containing Protein 1 Length = 75

Iteration: 1
 Score = 74.7 bits (182), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 33/66 (50%), Positives = 42/66 (63%)
Query: 12 LRCQRIGCNATFTEDDNPEGSCTFHDSGPIFHDGMKEWSCCKRRSHDFSLFLEIPGCKTG 71
          L C   GC   F  + N + +CT+H   P+FHD +K WSCCKRR+ DFS FL I GC  G
Sbjct: 10 LLCYNRGCGQRFDPETNSDDACTYHPGVPVFHDALKGWSCCKRRTTDFSDFLSIVGCTKG 69
Query: 72 KHTTEK 77
          +H +EK
Sbjct: 70 RHNSEK 75

>pdb|2YRT|A Chain A, Solution Structure Of The Chord Domain Of Human Chord- Containing Protein 1 Length = 75

Iteration: 1
 Score = 73.6 bits (179), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 29/63 (46%), Positives = 42/63 (66%)
Query: 162 ICKNKGCGKTFKEKDNHETACSYHPGPAVFHDRMRGWKCCDIHVKEFDEFMGIPPCTKGW 221
           +C N+GCG+ F  + N + AC+YHPG  VFHD ++GW CC     +F +F+ I  CTKG 
Sbjct: 11  LCYNRGCGQRFDPETNSDDACTYHPGVPVFHDALKGWSCCKRRTTDFSDFLSIVGCTKGR 70
Query: 222 HDA 224
           H++
Sbjct: 71  HNS 73

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	228
2xcm_E	74	RAR1, cytosolic heat shock protein 90; chaperone-p	2e-29
2xcm_E	74	RAR1, cytosolic heat shock protein 90; chaperone-p	5e-23
2yrt_A	75	Chord containing protein-1; CHP1, structural genom	8e-28
2yrt_A	75	Chord containing protein-1; CHP1, structural genom	3e-26

>2xcm_E RAR1, cytosolic heat shock protein 90; chaperone-protein binding complex, stress response; HET: ADP; 2.20A {Arabidopsis thaliana} Length = 74

 Score =  103 bits (259), Expect = 2e-29
 Identities = 59/73 (80%), Positives = 68/73 (93%)

Query: 153 KKIGINEPQICKNKGCGKTFKEKDNHETACSYHPGPAVFHDRMRGWKCCDIHVKEFDEFM 212
             I IN+PQ+CKNKGCG+TFKE+DNHETACS+HPGPAVFHDR+RGWKCCD+HVKEFDEFM
Sbjct: 2   AVIDINQPQVCKNKGCGQTFKERDNHETACSHHPGPAVFHDRLRGWKCCDVHVKEFDEFM 61

Query: 213 GIPPCTKGWHDAN 225
            IPPCTKGWH ++
Sbjct: 62  EIPPCTKGWHSSS 74

>2xcm_E RAR1, cytosolic heat shock protein 90; chaperone-protein binding complex, stress response; HET: ADP; 2.20A {Arabidopsis thaliana} Length = 74

 Score = 87.7 bits (217), Expect = 5e-23
 Identities = 25/63 (39%), Positives = 35/63 (55%)

Query: 13 RCQRIGCNATFTEDDNPEGSCTFHDSGPIFHDGMKEWSCCKRRSHDFSLFLEIPGCKTGK 72
           C+  GC  TF E DN E +C+ H    +FHD ++ W CC     +F  F+EIP C  G 
Sbjct: 11 VCKNKGCGQTFKERDNHETACSHHPGPAVFHDRLRGWKCCDVHVKEFDEFMEIPPCTKGW 70

Query: 73 HTT 75
          H++
Sbjct: 71 HSS 73

>2yrt_A Chord containing protein-1; CHP1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 75

 Score =  100 bits (249), Expect = 8e-28
 Identities = 29/68 (42%), Positives = 42/68 (61%)

Query: 157 INEPQICKNKGCGKTFKEKDNHETACSYHPGPAVFHDRMRGWKCCDIHVKEFDEFMGIPP 216
                +C N+GCG+ F  + N + AC+YHPG  VFHD ++GW CC     +F +F+ I  
Sbjct: 6   SGMALLCYNRGCGQRFDPETNSDDACTYHPGVPVFHDALKGWSCCKRRTTDFSDFLSIVG 65

Query: 217 CTKGWHDA 224
           CTKG H++
Sbjct: 66  CTKGRHNS 73

>2yrt_A Chord containing protein-1; CHP1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 75

 Score = 95.8 bits (238), Expect = 3e-26
 Identities = 33/66 (50%), Positives = 42/66 (63%)

Query: 12 LRCQRIGCNATFTEDDNPEGSCTFHDSGPIFHDGMKEWSCCKRRSHDFSLFLEIPGCKTG 71
          L C   GC   F  + N + +CT+H   P+FHD +K WSCCKRR+ DFS FL I GC  G
Sbjct: 10 LLCYNRGCGQRFDPETNSDDACTYHPGVPVFHDALKGWSCCKRRTTDFSDFLSIVGCTKG 69

Query: 72 KHTTEK 77
          +H +EK
Sbjct: 70 RHNSEK 75

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	228
2xcm_E	74	RAR1, cytosolic heat shock protein 90; chaperone-p	100.0
2xcm_E	74	RAR1, cytosolic heat shock protein 90; chaperone-p	100.0
2yrt_A	75	Chord containing protein-1; CHP1, structural genom	100.0
2yrt_A	75	Chord containing protein-1; CHP1, structural genom	100.0
2ys2_A	50	Cytoplasmic tyrosine-protein kinase BMX; bone marr	93.56
2ys2_A	50	Cytoplasmic tyrosine-protein kinase BMX; bone marr	93.26
2e6i_A	64	Tyrosine-protein kinase ITK/TSK; BTK, structural g	92.2
2e6i_A	64	Tyrosine-protein kinase ITK/TSK; BTK, structural g	91.7
2lul_A	164	Tyrosine-protein kinase TEC; structural genomics,	90.34
2lul_A	164	Tyrosine-protein kinase TEC; structural genomics,	89.94
1btk_A	169	Bruton'S tyrosine kinase; transferase, PH domain,	84.96

>2xcm_E RAR1, cytosolic heat shock protein 90; chaperone-protein binding complex, stress response; HET: ADP; 2.20A {Arabidopsis thaliana}

Probab=100.00  E-value=1.8e-37  Score=231.21  Aligned_cols=72  Identities=82%  Similarity=1.630  Sum_probs=69.1

Q ss_pred             ccCCCCCCccccCCCCceeecCCCCCCCceecCCCccccCCCCeeecCCccccchhhhcCCCCCccccCCCC
Q 027086          154 KIGINEPQICKNKGCGKTFKEKDNHETACSYHPGPAVFHDRMRGWKCCDIHVKEFDEFMGIPPCTKGWHDAN  225 (228)
Q Consensus       154 ~~~i~~g~~C~n~GC~~~~~~~~~~~~~C~yHpG~PvFHeg~K~WsCC~~k~~dFd~Fl~i~gC~~G~H~~~  225 (228)
                      .++|+++++|+|+||+++|.+++|.+++|+||||+|||||||||||||++||+|||+||+|+||++|+|+.+
T Consensus         3 ~~~i~~~~~C~n~GC~~~f~~~~n~~~~C~yHpG~PvFHdg~K~WsCC~k~~~dF~~Fl~i~GCt~G~H~~~   74 (74)
T 2xcm_E            3 VIDINQPQVCKNKGCGQTFKERDNHETACSHHPGPAVFHDRLRGWKCCDVHVKEFDEFMEIPPCTKGWHSSS   74 (74)
T ss_dssp             CCCTTSCEECCSBTTCCEECSTTCCTTCEEEBCCCEEEETTEEEETTTTEECSSHHHHTTCCCCEEECCCCC
T ss_pred             eEccCCCCcEECCCcCCEecCCCCCCCceEecCCCceeCCCCeeeCCCCCcccChhHhccCCCcccccccCC
Confidence            467999999999999999999999999999999999999999999999999999999999999999999863

>2xcm_E RAR1, cytosolic heat shock protein 90; chaperone-protein binding complex, stress response; HET: ADP; 2.20A {Arabidopsis thaliana}

Probab=100.00  E-value=9.4e-37  Score=227.34  Aligned_cols=70  Identities=37%  Similarity=0.856  Sum_probs=67.7

Q ss_pred             cccccccccccCCCCceeCCCCCCCCCccccCCCCcccCCCcccccCCCcccChhhhcCCCCCCcccCCC
Q 027086            6 DDALKRLRCQRIGCNATFTEDDNPEGSCTFHDSGPIFHDGMKEWSCCKRRSHDFSLFLEIPGCKTGKHTT   75 (228)
Q Consensus         6 ~~~~~~~~C~n~GCg~~f~~~~N~~~~C~~HpG~PvFHd~~K~WsCC~k~~~df~eFl~i~gCt~G~H~~   75 (228)
                      -++.++++|+|+||+|.|++++|.+++|+||||+||||||||+||||+++++||++||+|+||++|+|++
T Consensus         4 ~~i~~~~~C~n~GC~~~f~~~~n~~~~C~yHpG~PvFHdg~K~WsCC~k~~~dF~~Fl~i~GCt~G~H~~   73 (74)
T 2xcm_E            4 IDINQPQVCKNKGCGQTFKERDNHETACSHHPGPAVFHDRLRGWKCCDVHVKEFDEFMEIPPCTKGWHSS   73 (74)
T ss_dssp             CCTTSCEECCSBTTCCEECSTTCCTTCEEEBCCCEEEETTEEEETTTTEECSSHHHHTTCCCCEEECCCC
T ss_pred             EccCCCCcEECCCcCCEecCCCCCCCceEecCCCceeCCCCeeeCCCCCcccChhHhccCCCcccccccC
Confidence            4678899999999999999999999999999999999999999999999999999999999999999985

>2yrt_A Chord containing protein-1; CHP1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=100.00  E-value=1.7e-36  Score=226.49  Aligned_cols=69  Identities=48%  Similarity=1.035  Sum_probs=65.8

Q ss_pred             ccc-cccccCCCCceeCCCCCCCCCccccCCCCcccCCCcccccCCCcccChhhhcCCCCCCcccCCCCC
Q 027086            9 LKR-LRCQRIGCNATFTEDDNPEGSCTFHDSGPIFHDGMKEWSCCKRRSHDFSLFLEIPGCKTGKHTTEK   77 (228)
Q Consensus         9 ~~~-~~C~n~GCg~~f~~~~N~~~~C~~HpG~PvFHd~~K~WsCC~k~~~df~eFl~i~gCt~G~H~~~~   77 (228)
                      .+| ++|+|+||+|.|++++|.+++|+||||+||||||||+||||+++++||++||+||||++|+|++++
T Consensus         6 ~~m~~~C~n~GC~~~f~~~~n~~~~C~yHpG~PvFHdg~K~WsCC~kk~~dF~~Fl~i~GCt~G~H~~~k   75 (75)
T 2yrt_A            6 SGMALLCYNRGCGQRFDPETNSDDACTYHPGVPVFHDALKGWSCCKRRTTDFSDFLSIVGCTKGRHNSEK   75 (75)
T ss_dssp             CSCCEECCSTTTCCEECTTTCCTTTBCCCSSCEEEETTEEEESSSSCEESSHHHHTTCCCSSCBCCCSCC
T ss_pred             CcCccccCCCCCCCEecCCCCCCCCeECCCCCcccCCCCeeeCCCCCcccCHHHhccCCCcccccccCCC
Confidence            345 599999999999999999999999999999999999999999999999999999999999999875

>2yrt_A Chord containing protein-1; CHP1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=100.00  E-value=2e-35  Score=220.63  Aligned_cols=65  Identities=45%  Similarity=1.149  Sum_probs=63.4

Q ss_pred             CccccCCCCceeecCCCCCCCceecCCCccccCCCCeeecCCccccchhhhcCCCCCccccCCCC
Q 027086          161 QICKNKGCGKTFKEKDNHETACSYHPGPAVFHDRMRGWKCCDIHVKEFDEFMGIPPCTKGWHDAN  225 (228)
Q Consensus       161 ~~C~n~GC~~~~~~~~~~~~~C~yHpG~PvFHeg~K~WsCC~~k~~dFd~Fl~i~gC~~G~H~~~  225 (228)
                      ++|+|+||+++|.+++|.+++|+||||+||||||||+||||++||+|||+||+|+||++|+|+..
T Consensus        10 ~~C~n~GC~~~f~~~~n~~~~C~yHpG~PvFHdg~K~WsCC~kk~~dF~~Fl~i~GCt~G~H~~~   74 (75)
T 2yrt_A           10 LLCYNRGCGQRFDPETNSDDACTYHPGVPVFHDALKGWSCCKRRTTDFSDFLSIVGCTKGRHNSE   74 (75)
T ss_dssp             EECCSTTTCCEECTTTCCTTTBCCCSSCEEEETTEEEESSSSCEESSHHHHTTCCCSSCBCCCSC
T ss_pred             cccCCCCCCCEecCCCCCCCCeECCCCCcccCCCCeeeCCCCCcccCHHHhccCCCcccccccCC
Confidence            58999999999999999999999999999999999999999999999999999999999999875

>2ys2_A Cytoplasmic tyrosine-protein kinase BMX; bone marrow tyrosine kinase gene in chromosome X protein, epithelial and endothelial tyrosine kinase, ETK; NMR {Homo sapiens}

Probab=93.56  E-value=0.043  Score=37.69  Aligned_cols=33  Identities=33%  Similarity=0.809  Sum_probs=23.5

Q ss_pred             CCCCCCccccCCCCcccCCCcccccCCCcccChhhhcCCCCCC
Q 027086           27 DNPEGSCTFHDSGPIFHDGMKEWSCCKRRSHDFSLFLEIPGCK   69 (228)
Q Consensus        27 ~N~~~~C~~HpG~PvFHd~~K~WsCC~k~~~df~eFl~i~gCt   69 (228)
                      .|..-.=.||||.  |-+|  .|+||+...      ...+||+
T Consensus         7 ~N~~~l~~YHPg~--~~~g--~W~CC~q~~------k~a~GC~   39 (50)
T 2ys2_A            7 GNPHLLVKYHSGF--FVDG--KFLCCQQSC------KAAPGCT   39 (50)
T ss_dssp             SCSCCSCCCCSSC--EETT--EESSSCCSS------SSCCCCC
T ss_pred             cCcchhhhcCCCc--ccCC--eECCCCCCC------ccCCCCc
Confidence            3445567899997  4444  499999643      4678998

>2ys2_A Cytoplasmic tyrosine-protein kinase BMX; bone marrow tyrosine kinase gene in chromosome X protein, epithelial and endothelial tyrosine kinase, ETK; NMR {Homo sapiens}

Probab=93.26  E-value=0.044  Score=37.68  Aligned_cols=33  Identities=33%  Similarity=0.648  Sum_probs=24.2

Q ss_pred             CCCCCceecCCCccccCCCCeeecCCccccchhhhcCCCCCcc
Q 027086          177 NHETACSYHPGPAVFHDRMRGWKCCDIHVKEFDEFMGIPPCTK  219 (228)
Q Consensus       177 ~~~~~C~yHpG~PvFHeg~K~WsCC~~k~~dFd~Fl~i~gC~~  219 (228)
                      |..-.=.||||.  |-+|+  |+||..      .-..-+||+.
T Consensus         8 N~~~l~~YHPg~--~~~g~--W~CC~q------~~k~a~GC~~   40 (50)
T 2ys2_A            8 NPHLLVKYHSGF--FVDGK--FLCCQQ------SCKAAPGCTL   40 (50)
T ss_dssp             CSCCSCCCCSSC--EETTE--ESSSCC------SSSSCCCCCC
T ss_pred             CcchhhhcCCCc--ccCCe--ECCCCC------CCccCCCCcc
Confidence            444456799998  65554  999976      5677899983

>2e6i_A Tyrosine-protein kinase ITK/TSK; BTK, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=92.20  E-value=0.1  Score=37.53  Aligned_cols=32  Identities=28%  Similarity=0.619  Sum_probs=24.5

Q ss_pred             CCCCCceecCCCccccCCCCeeecCCccccchhhhcCCCCCc
Q 027086          177 NHETACSYHPGPAVFHDRMRGWKCCDIHVKEFDEFMGIPPCT  218 (228)
Q Consensus       177 ~~~~~C~yHpG~PvFHeg~K~WsCC~~k~~dFd~Fl~i~gC~  218 (228)
                      |..-.=.||||.  |-+|+  |+||..      ....-+||+
T Consensus         8 N~~ll~~yHPg~--~~~Gk--W~CC~q------~~k~a~GC~   39 (64)
T 2e6i_A            8 NNSLVPKYHPNF--WMDGK--WRCCSQ------LEKLATGCA   39 (64)
T ss_dssp             CCSSCCEECSSC--BCSSS--BSSSCC------SCTTCCCCE
T ss_pred             ChhhhhhcCCCc--eeCCe--ECCCCC------CCccCCCCc
Confidence            455567899998  76665  999976      466778887

>2e6i_A Tyrosine-protein kinase ITK/TSK; BTK, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=91.70  E-value=0.12  Score=37.08  Aligned_cols=33  Identities=27%  Similarity=0.625  Sum_probs=24.1

Q ss_pred             CCCCCCccccCCCCcccCCCcccccCCCcccChhhhcCCCCCC
Q 027086           27 DNPEGSCTFHDSGPIFHDGMKEWSCCKRRSHDFSLFLEIPGCK   69 (228)
Q Consensus        27 ~N~~~~C~~HpG~PvFHd~~K~WsCC~k~~~df~eFl~i~gCt   69 (228)
                      .|..-.=.||||.  |-+|.  |+||....      ..-+||+
T Consensus         7 ~N~~ll~~yHPg~--~~~Gk--W~CC~q~~------k~a~GC~   39 (64)
T 2e6i_A            7 GNNSLVPKYHPNF--WMDGK--WRCCSQLE------KLATGCA   39 (64)
T ss_dssp             CCCSSCCEECSSC--BCSSS--BSSSCCSC------TTCCCCE
T ss_pred             cChhhhhhcCCCc--eeCCe--ECCCCCCC------ccCCCCc
Confidence            3455567899997  55655  99999654      3578998

>2lul_A Tyrosine-protein kinase TEC; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, transferase; NMR {Homo sapiens}

Probab=90.34  E-value=0.17  Score=40.46  Aligned_cols=33  Identities=27%  Similarity=0.705  Sum_probs=23.4

Q ss_pred             CCCCCccccCCCCcccCCCcccccCCCcccChhhhcCCCCCCc
Q 027086           28 NPEGSCTFHDSGPIFHDGMKEWSCCKRRSHDFSLFLEIPGCKT   70 (228)
Q Consensus        28 N~~~~C~~HpG~PvFHd~~K~WsCC~k~~~df~eFl~i~gCt~   70 (228)
                      |..-.=.||||.  |-++  .||||+...      ...+||..
T Consensus       123 n~~~~~~yHpg~--~~~~--~w~CC~~~~------~~a~GC~~  155 (164)
T 2lul_A          123 NNNIMIKYHPKF--WTDG--SYQCCRQTE------KLAPGCEK  155 (164)
T ss_dssp             CSCCCSEECCSC--CCTT--CCCSSSCTT------SCCCCSEE
T ss_pred             ChhhhhhcCCCc--ccCC--eEeeCCCCC------CCCCCCcc
Confidence            444456799998  5554  499999654      46789975

>2lul_A Tyrosine-protein kinase TEC; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, transferase; NMR {Homo sapiens}

Probab=89.94  E-value=0.21  Score=39.92  Aligned_cols=31  Identities=29%  Similarity=0.634  Sum_probs=23.3

Q ss_pred             CCCceecCCCccccCCCCeeecCCccccchhhhcCCCCCcc
Q 027086          179 ETACSYHPGPAVFHDRMRGWKCCDIHVKEFDEFMGIPPCTK  219 (228)
Q Consensus       179 ~~~C~yHpG~PvFHeg~K~WsCC~~k~~dFd~Fl~i~gC~~  219 (228)
                      .-.=.||||.  |-+|  .||||..      .-...+||..
T Consensus       125 ~~~~~yHpg~--~~~~--~w~CC~~------~~~~a~GC~~  155 (164)
T 2lul_A          125 NIMIKYHPKF--WTDG--SYQCCRQ------TEKLAPGCEK  155 (164)
T ss_dssp             CCCSEECCSC--CCTT--CCCSSSC------TTSCCCCSEE
T ss_pred             hhhhhcCCCc--ccCC--eEeeCCC------CCCCCCCCcc
Confidence            3345799998  6555  4999976      5678899986

>1btk_A Bruton'S tyrosine kinase; transferase, PH domain, BTK motif, zinc binding, X-linked agammaglobulinemia, tyrosine-protein kinase; 1.60A {Homo sapiens} SCOP: b.55.1.1 PDB: 1b55_A* 2z0p_A* 1bwn_A*

Probab=84.96  E-value=0.39  Score=38.81  Aligned_cols=31  Identities=23%  Similarity=0.471  Sum_probs=23.3

Q ss_pred             CCCceecCCCccccCCCCeeecCCccccchhhhcCCCCCcc
Q 027086          179 ETACSYHPGPAVFHDRMRGWKCCDIHVKEFDEFMGIPPCTK  219 (228)
Q Consensus       179 ~~~C~yHpG~PvFHeg~K~WsCC~~k~~dFd~Fl~i~gC~~  219 (228)
                      .-.=.||||.  |-+|  .|+||..      ....-+||..
T Consensus       136 ~~~~~~h~~~--~~~~--~w~cc~~------~~~~~~gc~~  166 (169)
T 1btk_A          136 DLVQKYHPCF--WIDG--QYLCCSQ------TAKNAMGCQI  166 (169)
T ss_dssp             CCCSEECSSC--EETT--EETTTCC------CCTTSCCSEE
T ss_pred             chhhccCCCc--eeCC--EeccCCC------CCCCCCCCcc
Confidence            3356799998  6555  6999986      5778889973

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00