Citrus Sinensis ID: 027132

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------
Protein Sequence
MAAATSLLELNAFKWTQLRPNPRLFPHRPAKFSANLNNFRTLQRTTTARNFNGVKCFCRPQNIESSSTSSASPDRFFDPLEILTNALSKSIQALKKPAVIAVVLGFLLTWDPNLAFAASGGRMGGRSFSSHSSSSSSRTYMVEPRVGFSASAPYYAPSPFGGAGGGIYVGPAVGVGVGAGSSLFLILMGFAAFVLVSGFLSDRSDGSVLTATDKTSVIKLQVLDLRL
Secondary Structure (PSIPRED)
ccccccHHHcccccccccccccccccccccccccccccccccccccccccccEEEEEEccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccHHHHHHHHHHHHHHHHHccccccccccEEEEccEEEEEEEEEEEccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccEEEEEEccccccccccccccccccccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccEEEcccEEEccccHHHHHHHHHHHHHHHHHHccccccccccEEEEccccEEEEEEEEEccc
Coil and Loop (DISEMBL)
MAAATSLLELNafkwtqlrpnprlfphrpakfsanlNNFRTLQRtttarnfngvkcfcrpqniessstssaspdrffdpLEILTNALSKSIQALKKPAVIAVVLGFLltwdpnlafaasggrmggrsfsshssssssrtymveprvgfsasapyyapspfggagggiyvgpavgvgvGAGSSLFLILMGFAAFVLVSGflsdrsdgsvltatdktsvIKLQVLDLRL
Flexible Loop (DISEMBL)
MAAATsllelnafkwtqlrpnPRLFPHRPAKFSANLNNFRTLQRTTTARNFNGVKCFCRPQNIessstssaspdRFFDPLEILTNALSKSIQALKKPAVIAVVLGFLLTWDPNLAFAASGGRMGGRSFSshssssssrTYMVEPRVGFSASAPYYAPSPFGGAGGGIYVGPAVGVGVGAGSSLFLILMGFAAFVLVSGFLSDRSdgsvltatdktsviklqvldlrl
Low Complexity Region (SEG)
MAAATSLLELNAFKWTQLRPNPRLFPHRPAKFSANLNNFRTLQRTTTARNFNGVKCFCRPQNIESSSTSSASPDRFFDPLEILTNALSKSIQALKKPAVIAVVLGFLLTWDPNLAFAAsggrmggrsfsshssssssrTYMVEPRVGFSASAPYYAPSPFggagggiyvgpavgvgvgagSSLFLILMGFAAFVLVSGFLSDRSDGSVLTATDKTSVIKLQVLDLRL
Disordered region (IsUnstruct)
******LLELNAFKWTQLRPNPRLFPHRPAKFSANLNNFRTLQRTTTARNFNGVKCFCR****************FFDPLEILTNALSKSIQALKKPAVIAVVLGFLLTWDPNLAFAA***************************VGFSASAPYYAPSPFGGAGGGIYVGPAVGVGVGAGSSLFLILMGFAAFVLVSGFLSDRSDGSVLTATDKTSVIKLQVL****
Disordered Region (DISOPRED)
***ATSL*ELNAFKWTQLRPNPRLFPHRPAKFSANLN***************GV**************************EILTNALSKSIQALKKPAVIAVVLGFLLTWDPNLAFA*********************************SAPYYAPSPFGGAGGGIYVGPAVGVGVGAGSSLFLILMGFAAFVLVSGFLSDRSDGSVLTATDKTSVIKLQVLDLRL
Disordered Region (DISEMBL)
MAAATSLLELNAFKWTQLRPNPRLFPHRPAKFSANLNNFRTLQRTTTARNFNGVKCFCRPQN**********PDRFFDPLEILTNALSKSIQALKKPAVIAVVLGFLLTWDPNLAFAASG********************MVEPRVGFSASAPYYAPSPFGGAGGGIYVGPAVGVGVGAGSSLFLILMGFAAFVLVSGFLSDRSDGSVLTATDKTSVIKLQVLDLRL
Disordered Region (DISPRO)
****TSLLELNAFKWTQLRPNPRLFPHRPAKFSANLNNFRTLQRTTTARNFNGVKCFCRPQ*************RFFDPLEILTNALSKSIQALKKPAVIAVVLGFLLTWDPNLAFA******************************FSASAPYYAPSPFGGAGGGIYVGPAVGVGVGAGSSLFLILMGFAAFVLVSGFLSDRSDGSVLTATDKTSVIKLQVLDLRL
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAAATSLLELNAFKWTQLRPNPRLFPHRPAKFSANLNNFRTLQRTTTARNFNGVKCFCRPQNIESSSTSSASPDRFFDPLEILTNALSKSIQALKKPAVIAVVLGFLLTWDPNLAFAASGGRMGGRSFSSHSSSSSSRTYMVEPRVGFSASAPYYAPSPFGGAGGGIYVGPAVGVGVGAGSSLFLILMGFAAFVLVSGFLSDRSDGSVLTATDKTSVIKLQVLDLRL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	227
449449537	406	PREDICTED: uncharacterized protein LOC10	0.647	0.362	0.644	2e-39
449518362	231	PREDICTED: uncharacterized protein LOC10	0.647	0.636	0.644	1e-38
356573091	378	PREDICTED: uncharacterized protein LOC10	0.850	0.510	0.533	9e-33
357512223	390	hypothetical protein MTR_7g114660 [Medic	0.845	0.492	0.507	1e-32
18404967	391	uncharacterized protein [Arabidopsis tha	0.903	0.524	0.489	1e-32
11993861	391	unknown protein [Arabidopsis thaliana] g	0.903	0.524	0.484	5e-32
255542366	360	conserved hypothetical protein [Ricinus	0.629	0.397	0.707	2e-31
297848040	389	hypothetical protein ARALYDRAFT_474728 [	0.907	0.529	0.478	1e-30
118489113	407	unknown [Populus trichocarpa x Populus d	0.929	0.518	0.483	1e-30
148905805	460	unknown [Picea sitchensis]	0.572	0.282	0.559	3e-25

>gi|449449537|ref|XP_004142521.1| PREDICTED: uncharacterized protein LOC101210275 [Cucumis sativus]

 Score =  167 bits (424), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 96/149 (64%), Positives = 116/149 (77%), Gaps = 2/149 (1%)

Query: 74  DRFFDPLEILTNALSKSIQALKKPAVIAVVLGFLLTWDPNLAFAASGGRMGGRSFSSHSS 133
           D+   P+E++ N++  +++AL+KPA+ AV+LG LL +DPN A AASGGR+GG +FSS SS
Sbjct: 85  DKPKSPMEVIGNSIINALKALQKPAIAAVLLGLLLMYDPNSALAASGGRVGGNAFSSRSS 144

Query: 134 SSSSRTYMVEPRVGFSASAPYYAPSPFGGAGGGIYVGPAVGVGVGAGSSLFLILMGFAAF 193
           SSS          GFS SAPY +PS FGG  GGIYVGPAVGVG+GAGSS   IL GFAAF
Sbjct: 145 SSSRSYSTPRMSSGFSYSAPYTSPSMFGG--GGIYVGPAVGVGLGAGSSFVFILAGFAAF 202

Query: 194 VLVSGFLSDRSDGSVLTATDKTSVIKLQV 222
           +LVSGFLSDRSD SVLTA+DKTSV+KLQV
Sbjct: 203 LLVSGFLSDRSDTSVLTASDKTSVLKLQV 231

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449518362|ref|XP_004166211.1| PREDICTED: uncharacterized protein LOC101226468 [Cucumis sativus]

 Score =  165 bits (417), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 96/149 (64%), Positives = 116/149 (77%), Gaps = 2/149 (1%)

Query: 74  DRFFDPLEILTNALSKSIQALKKPAVIAVVLGFLLTWDPNLAFAASGGRMGGRSFSSHSS 133
           D+   P+E++ N++  +++AL+KPA+ AV+LG LL +DPN A AASGGR+GG +FSS SS
Sbjct: 85  DKPKSPMEVIGNSIINALKALQKPAIAAVLLGLLLMYDPNSALAASGGRVGGNAFSSRSS 144

Query: 134 SSSSRTYMVEPRVGFSASAPYYAPSPFGGAGGGIYVGPAVGVGVGAGSSLFLILMGFAAF 193
           SSS          GFS SAPY +PS FGG  GGIYVGPAVGVG+GAGSS   IL GFAAF
Sbjct: 145 SSSRSYSTPRMSSGFSYSAPYTSPSMFGG--GGIYVGPAVGVGLGAGSSFVFILAGFAAF 202

Query: 194 VLVSGFLSDRSDGSVLTATDKTSVIKLQV 222
           +LVSGFLSDRSD SVLTA+DKTSV+KLQV
Sbjct: 203 LLVSGFLSDRSDTSVLTASDKTSVLKLQV 231

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356573091|ref|XP_003554698.1| PREDICTED: uncharacterized protein LOC100800250 [Glycine max]

 Score =  145 bits (367), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 119/223 (53%), Positives = 141/223 (63%), Gaps = 30/223 (13%)

Query: 5   TSLLELN--AFKWTQLRPNPRLFPHRPAKFSANLNNFRTLQRTTTARNFNGVKCFCRPQN 62
           T LL+ N    KW QL   PR    RP +F+   +         + R  + VKC      
Sbjct: 6   TLLLQANPSHLKWNQLPSLPRR--TRPDRFTPIPD---------SKRRVSSVKCI----- 49

Query: 63  IESSSTSSASPDRFFD---PLEILTNALSKSIQALKKPAVIAVVLGFLLTWDPNLAFAAS 119
                +SS  PD  F    P E+L + +S +++ALKKPA+ AV++G LL +DP  AFAAS
Sbjct: 50  -----SSSRKPDNTFSLQSPWEVLASTVSNTLKALKKPAIAAVLVGLLLMYDPTCAFAAS 104

Query: 120 GGRMGGRSFSSHSSSSSSRTYMVEPRVGFSASAPYYAPSPFGGAGGGIYVGPAVGVGVGA 179
           GGRMGGRSFSS SSSS S +       GFS SAPYY PSPFGG   G     AVGVGVGA
Sbjct: 105 GGRMGGRSFSSSSSSSRSYSVPRTSSSGFSFSAPYYGPSPFGGVYVGP----AVGVGVGA 160

Query: 180 GSSLFLILMGFAAFVLVSGFLSDRSDGSVLTATDKTSVIKLQV 222
           GSS FLIL+GF AFVLVSGFLSDRS+GSVLTA DKT+V+KLQV
Sbjct: 161 GSSFFLILVGFLAFVLVSGFLSDRSEGSVLTAADKTTVLKLQV 203

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357512223|ref|XP_003626400.1| hypothetical protein MTR_7g114660 [Medicago truncatula] gi|355501415|gb|AES82618.1| hypothetical protein MTR_7g114660 [Medicago truncatula]

 Score =  145 bits (367), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 106/209 (50%), Positives = 127/209 (60%), Gaps = 17/209 (8%)

Query: 28  RPAKFSANLNNFRTLQRTTT----------ARNFNGVKCFCRPQNIESSSTSSASPDRFF 77
            P  F    NN  +  RT T            + N +K  C       + TS  S     
Sbjct: 10  EPCPFHLKWNNQFSFPRTHTFITSISIPNIKSHNNTIKFKCHLSQNHKTPTSITSNSNSN 69

Query: 78  DPLEILTNALSKSI-QALKKPAVIAVVLGFLLTWDPNLAFAASGGRMGGRSFSSHSSSSS 136
              + L  +L+ +I   L+KPA  A+++G LL ++PN + AASGGR+GGRSFSS SSSSS
Sbjct: 70  SNSKSLLESLATTIWNTLRKPAFAAILIGILLMYNPNTSLAASGGRIGGRSFSSSSSSSS 129

Query: 137 SRTYMVEPRV--GFSASAPYYAPSPFGGAGGGIYVGPAVGVGVGAGSSLFLILMGFAAFV 194
           S      P    GFS SAPYY PSPF G   G+Y GPAVGVGVGAGSSLFLIL GFAAF+
Sbjct: 130 SSRSYSVPSPSPGFSYSAPYYGPSPFSG---GVYFGPAVGVGVGAGSSLFLILAGFAAFI 186

Query: 195 LVSGFLSDRSDGSVLT-ATDKTSVIKLQV 222
           LVSGFLSDR +GSVLT A  KT+V+KLQV
Sbjct: 187 LVSGFLSDRDEGSVLTAAAGKTTVLKLQV 215

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18404967|ref|NP_564660.1| uncharacterized protein [Arabidopsis thaliana] gi|20260342|gb|AAM13069.1| unknown protein [Arabidopsis thaliana] gi|21537407|gb|AAM61748.1| unknown [Arabidopsis thaliana] gi|332194993|gb|AEE33114.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  145 bits (366), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 114/233 (48%), Positives = 143/233 (61%), Gaps = 28/233 (12%)

Query: 1   MAAATSLLELNAFKWTQLRPNPRLFPHRPAKFSANLNNFRTLQRTTTARNFNGVKCFCRP 60
           MA++++ LEL  F+W Q  P    +  RP   +  L + +  +R+ + R    VK     
Sbjct: 1   MASSSTFLELTPFQWNQPLP----YTQRPHHRTVLLYS-KPQRRSNSIRLQISVKY---- 51

Query: 61  QNIESSSTSSASPD--RFFDPLEILTNALSKSIQALKKPAVIAVVLGFLLTWDPNLAFAA 118
                 STSS+ PD    F+P E +   + K++ +LKKPA+ AV+LG LL +DPN A AA
Sbjct: 52  ----KQSTSSSDPDLRSNFNPFEQIAIQVKKALDSLKKPAIAAVLLGLLLFYDPNSALAA 107

Query: 119 SGGRMGGRSFSSHSSSSSSRTYMV-------EPRVGFSA-SAPYYAPSPFGGAGGGIYVG 170
           SGGR+GG SFSS S SSSS +           P   +SA +APYY PSPFGG     +VG
Sbjct: 108 SGGRIGGNSFSSRSRSSSSSSSQSYSVPRTSNPSFSYSARTAPYYGPSPFGGG----FVG 163

Query: 171 PAVGVGVGAGSSLFLILMGFAAFVLVSGFLSDRS-DGSVLTATDKTSVIKLQV 222
           PAVG G G  SS  LIL+GFAAFVLVSGFLSDRS D S+LT T KTSVIKLQV
Sbjct: 164 PAVGFGFGGFSSFSLILVGFAAFVLVSGFLSDRSQDDSILTDTQKTSVIKLQV 216

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|11993861|gb|AAG42914.1|AF327533_1 unknown protein [Arabidopsis thaliana] gi|13926263|gb|AAK49603.1|AF372887_1 At1g54520/F20D21_34 [Arabidopsis thaliana] gi|28416543|gb|AAO42802.1| At1g54520/F20D21_34 [Arabidopsis thaliana]

 Score =  143 bits (360), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 113/233 (48%), Positives = 142/233 (60%), Gaps = 28/233 (12%)

Query: 1   MAAATSLLELNAFKWTQLRPNPRLFPHRPAKFSANLNNFRTLQRTTTARNFNGVKCFCRP 60
           MA++++ LEL  F+W Q  P    +  RP   +  L + +  +R+ + R    VK     
Sbjct: 1   MASSSTFLELTPFQWNQPLP----YTQRPHHRTVLLYS-KPQRRSNSIRLQISVKY---- 51

Query: 61  QNIESSSTSSASPD--RFFDPLEILTNALSKSIQALKKPAVIAVVLGFLLTWDPNLAFAA 118
                 STSS+ PD    F+P E +   + K++ +LKKPA+ AV+LG LL +DPN A AA
Sbjct: 52  ----KQSTSSSDPDLRSNFNPFEQIAIQVKKALDSLKKPAIAAVLLGLLLFYDPNSALAA 107

Query: 119 SGGRMGGRSFSSHSSSSSSRTYMV-------EPRVGFSA-SAPYYAPSPFGGAGGGIYVG 170
           SGGR+GG SFSS S SSSS +           P   +SA +APYY PSPFGG     +VG
Sbjct: 108 SGGRIGGNSFSSRSRSSSSSSSQSYSVPRTSNPSFSYSARTAPYYGPSPFGGG----FVG 163

Query: 171 PAVGVGVGAGSSLFLILMGFAAFVLVSGFLSDRS-DGSVLTATDKTSVIKLQV 222
           PAVG G G  SS  LIL+GFAAFVLVSGFLSDRS D S+L  T KTSVIKLQV
Sbjct: 164 PAVGFGFGGFSSFSLILVGFAAFVLVSGFLSDRSQDDSILIDTQKTSVIKLQV 216

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255542366|ref|XP_002512246.1| conserved hypothetical protein [Ricinus communis] gi|223548207|gb|EEF49698.1| conserved hypothetical protein [Ricinus communis]

 Score =  141 bits (356), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 104/147 (70%), Positives = 120/147 (81%), Gaps = 4/147 (2%)

Query: 78  DPLEILTNALSKSIQALKKPAVIAVVLGFLLTWDPNLAFAASGGRMGGRSFSSHSSSSSS 137
           +P +I+ N   +++  LKKPA+ A+++G LL +DPN AFAASGGRMGGRSFS  SSSSSS
Sbjct: 41  NPFDIIYNTFIRTLNFLKKPAIAAILVGALLMYDPNSAFAASGGRMGGRSFSRSSSSSSS 100

Query: 138 RTYMVEPRV--GFSASAPYYAPSPFGGAGGGIYVGPAVGVGVGAGSSLFLILMGFAAFVL 195
           R+Y V      GFS S PYYAPSPFGG  GG+YVGPAVGVGVGAGSSLF IL GFAAF+L
Sbjct: 101 RSYSVPRSSSPGFSYSVPYYAPSPFGG--GGLYVGPAVGVGVGAGSSLFFILAGFAAFML 158

Query: 196 VSGFLSDRSDGSVLTATDKTSVIKLQV 222
           VSGFLSDRS+G VLTATDKTSV+KLQV
Sbjct: 159 VSGFLSDRSEGGVLTATDKTSVLKLQV 185

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297848040|ref|XP_002891901.1| hypothetical protein ARALYDRAFT_474728 [Arabidopsis lyrata subsp. lyrata] gi|297337743|gb|EFH68160.1| hypothetical protein ARALYDRAFT_474728 [Arabidopsis lyrata subsp. lyrata]

 Score =  139 bits (349), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 110/230 (47%), Positives = 140/230 (60%), Gaps = 24/230 (10%)

Query: 1   MAAATSLLELNAFKWTQLRPNPRLFPHRPAKFSANLNNFRTLQRTTTARNFNGVKCFCRP 60
           MA++++ LEL  F+W Q  P  +   HR     A     +  QR+ + R    VK + + 
Sbjct: 1   MASSSTFLELTPFQWNQPLPYMKRPHHRSVLLYA-----KPQQRSNSIRLQISVK-YKQS 54

Query: 61  QNIESSSTSSASPDRFFDPLEILTNALSKSIQALKKPAVIAVVLGFLLTWDPNLAFAASG 120
            N +S   S++      +P E +   + K++ +LKKPA+ AV+LG LL +DPN A AASG
Sbjct: 55  TNSDSDLRSNS------NPFEQIAIQVKKALDSLKKPAIAAVLLGLLLFYDPNSALAASG 108

Query: 121 GRMGGRSFSSHSSSSSSRTYMV------EPRVGFSA-SAPYYAPSPFGGAGGGIYVGPAV 173
           GR+GG SFSS S SSSS +          P   +SA +APYY PSPFGG      +GPAV
Sbjct: 109 GRIGGNSFSSRSRSSSSSSQSYSVPRTSSPSFSYSARTAPYYGPSPFGGG----LMGPAV 164

Query: 174 GVGVGAGSSLFLILMGFAAFVLVSGFLSDRS-DGSVLTATDKTSVIKLQV 222
           G G G  SS  LIL+GFAAFVLVSGFLSDRS D S+LT T KTSVIKLQV
Sbjct: 165 GFGFGGFSSFSLILVGFAAFVLVSGFLSDRSQDDSILTDTQKTSVIKLQV 214

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118489113|gb|ABK96363.1| unknown [Populus trichocarpa x Populus deltoides]

 Score =  138 bits (348), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 116/240 (48%), Positives = 143/240 (59%), Gaps = 29/240 (12%)

Query: 3   AATSLLELNAFKWTQ----------LRPN--PRLFPHRPAKFSAN-LNNFRTLQRTTTAR 49
           A  SL+E +  KW +          L PN  P L P +P KF++  ++    L   +   
Sbjct: 2   ATASLIESSPLKWKKAFPFQPQPPLLTPNHYPYLIPLKPPKFTSKCISQLPILNPNSKNN 61

Query: 50  N--FNGVKCFCRP--QNIESSSTSSASPDRFFDPLEILTNALSKSIQALKKPAVIAVVLG 105
           N  F       +P  QN+    TS        +PLEI+   + K++  LKKPA+ A+++G
Sbjct: 62  NGPFPISPSITKPISQNLSKPPTSK-------NPLEIIYETMLKALDILKKPAIAAILIG 114

Query: 106 FLLTWDPNLAFAASGGRMGGRSFSSHSSSSSSRTYMVEPR---VGFSASAPYYAPSPFGG 162
            LL  DPN AFAASGGR+GG SFS  SSS  S      PR    GFS S PYYAPSPFGG
Sbjct: 115 VLLLHDPNSAFAASGGRIGGNSFSRRSSSEYSSRSYSVPRGGSSGFSYSVPYYAPSPFGG 174

Query: 163 AGGGIYVGPAVGVGVGAGSSLFLILMGFAAFVLVSGFLSDRSDGSVLTATDKTSVIKLQV 222
            G  +    AVGVGVGAGSSLF IL GFAAF+LVSGFLSDR++G VLTA +KTSV+KLQV
Sbjct: 175 GGVYVGP--AVGVGVGAGSSLFFILAGFAAFMLVSGFLSDRNEGGVLTAAEKTSVLKLQV 232

Source: Populus trichocarpa x Populus deltoides

Species: Populus trichocarpa x Populus deltoides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|148905805|gb|ABR16066.1| unknown [Picea sitchensis]

 Score =  121 bits (303), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 75/134 (55%), Positives = 96/134 (71%), Gaps = 4/134 (2%)

Query: 91  IQALKKPAVIAVVLGFLLTWDPNLAFAASGGRMGGRSFSSHSSSSSS--RTYMVEPRVGF 148
           ++AL +PA+IA+++G L+  DP  A AASGGRMGG+SFSS   S S   RT+   P   F
Sbjct: 101 LKALHRPAMIAILVGLLVVHDPEAAMAASGGRMGGKSFSSGRGSGSYSSRTFSA-PSPSF 159

Query: 149 SASAPYYAPSPFGGAGGGIYVGPAVGVGVGAGSSLFLILMGFAAFVLVSGFLSDRSDGSV 208
           S S PY APSPFG  GGG++V PA G+G GA S +FL++MGF A V VSGFLSDR+D  +
Sbjct: 160 SYSVPYAAPSPFG-FGGGLFVRPAYGIGFGASSGIFLLIMGFLAVVFVSGFLSDRADTGL 218

Query: 209 LTATDKTSVIKLQV 222
             ++ KTSV+KLQV
Sbjct: 219 FVSSQKTSVLKLQV 232

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	227
TAIR|locus:2020158	391	AT1G54520 "AT1G54520" [Arabido	0.903	0.524	0.399	1.9e-26

TAIR|locus:2020158 AT1G54520 "AT1G54520" [Arabidopsis thaliana (taxid:3702)]

 Score = 298 (110.0 bits), Expect = 1.9e-26, P = 1.9e-26
 Identities = 93/233 (39%), Positives = 120/233 (51%)

Query:     1 MAAATSLLELNAFKWTQLRPNPRLFPHRPAKFSANLNNFRTLQRTTTARNFNGVKCFCRP 60
             MA++++ LEL  F+W Q  P P  +  RP   +  L + +  +R+ + R    VK     
Sbjct:     1 MASSSTFLELTPFQWNQ--PLP--YTQRPHHRTVLLYS-KPQRRSNSIRLQISVKY---- 51

Query:    61 QNIESSSTSSASPD-RF-FDPLEILTNALSKSIQALKKPAVIAVVLGFLLTWDPNLAFAA 118
                   STSS+ PD R  F+P E +   + K++ +LKKPA+ AV+LG LL +DPN A AA
Sbjct:    52 ----KQSTSSSDPDLRSNFNPFEQIAIQVKKALDSLKKPAIAAVLLGLLLFYDPNSALAA 107

Query:   119 XXXXX---XXXXXXXXXXXXXXXTYMV----EPRVGFSA-SAPYYAPSPFXXXXXXXXXX 170
                                    +Y V     P   +SA +APYY PSPF          
Sbjct:   108 SGGRIGGNSFSSRSRSSSSSSSQSYSVPRTSNPSFSYSARTAPYYGPSPFGGGFVGPAVG 167

Query:   171 XXXXXXXXXXSSLFLILMGFAAFVLVSGFLSDRS-DGSVLTATDKTSVIKLQV 222
                       SS  LIL+GFAAFVLVSGFLSDRS D S+LT T KTSVIKLQV
Sbjct:   168 FGFGGF----SSFSLILVGFAAFVLVSGFLSDRSQDDSILTDTQKTSVIKLQV 216


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.323   0.134   0.393    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      227       187   0.00085  110 3  11 22  0.38    32
                                                     31  0.41    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  570 (61 KB)
  Total size of DFA:  140 KB (2087 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  13.96u 0.09s 14.05t   Elapsed:  00:00:02
  Total cpu time:  13.96u 0.09s 14.05t   Elapsed:  00:00:02
  Start:  Fri May 10 01:09:52 2013   End:  Fri May 10 01:09:54 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	227
pfam07466	280	pfam07466, DUF1517, Protein of unknown function (D	5e-20
COG4371	334	COG4371, COG4371, Predicted membrane protein [Func	7e-07

>gnl|CDD|219420 pfam07466, DUF1517, Protein of unknown function (DUF1517)

 Score = 85.5 bits (212), Expect = 5e-20
 Identities = 44/110 (40%), Positives = 52/110 (47%), Gaps = 13/110 (11%)

Query: 117 AASGGRMGGRSFSSHSSSSSSRTYMVEPRVGFSASAPYYAPSPFGGAGGGIYVGPAVGVG 176
           AASGGR+GG SF + S SSSS      PR        YY     GG  G  ++ P  G G
Sbjct: 2   AASGGRIGGGSFRAPSRSSSS------PRSSSPGGGGYY--GSPGGGFGFPFLIPFFGFG 53

Query: 177 VGAGSSLFLILMGFAAFVLVSGFLSDRS----DGSVLTATDKTSVIKLQV 222
            G G    LILM   A VLV+ F S         S   +  K SV++LQV
Sbjct: 54  GGGGLFGLLILMA-IAGVLVNAFRSAGGGGGGLSSAGRSNGKVSVVQLQV 102

This family consists of several hypothetical glycine rich plant and bacterial proteins of around 300 residues in length. The function of this family is unknown. Length = 280

>gnl|CDD|226808 COG4371, COG4371, Predicted membrane protein [Function unknown]

 Score = 48.8 bits (116), Expect = 7e-07
 Identities = 41/146 (28%), Positives = 60/146 (41%), Gaps = 15/146 (10%)

Query: 85  NALSKSIQALKKPAVIAVVLGFLLTWDPNLAFAA--SGGRMGGRSFSSHSSSSSSRTYMV 142
            A S+++ A    A+   VL   L   P    AA  SGGR+GG SF +   S  SR Y  
Sbjct: 13  RARSRALAACGTLALGGFVLAAALFVPPLSVAAAARSGGRIGGGSFRA--PSGYSRGYS- 69

Query: 143 EPRVGFSASAPYYAPSPFGGAG-GGIYVGPAVGVGVGAGSSLFLILMGFAAFVLVSGFLS 201
               G   S   Y+   + G G G  ++ P  G G G G    +++ G  A  +V     
Sbjct: 70  ----GGGPSGGGYSGGGYSGGGFGFPFIIPGGGGGGGFGGIFGILVFGAIANGVVGMMRR 125

Query: 202 DRSDGSV-----LTATDKTSVIKLQV 222
           + S G       L ++     + +QV
Sbjct: 126 NLSSGEARGLSSLGSSPTVQAVSVQV 151

Length = 334

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	227
COG4371	334	Predicted membrane protein [Function unknown]	99.88
PF07466	289	DUF1517: Protein of unknown function (DUF1517); In	99.85
COG4371	334	Predicted membrane protein [Function unknown]	82.24
PF07466	289	DUF1517: Protein of unknown function (DUF1517); In	80.47

>COG4371 Predicted membrane protein [Function unknown]

Probab=99.88  E-value=5e-22  Score=179.85  Aligned_cols=101  Identities=35%  Similarity=0.427  Sum_probs=75.3

Q ss_pred             hhhhh-cCCcccCCCCCCCCCCCCCCccc--cCCCCCCCCCCCCCCCCCCCCCCCce---eecccccccccC-chhHHHH
Q 027132          114 LAFAA-SGGRMGGRSFSSHSSSSSSRTYM--VEPRVGFSASAPYYAPSPFGGAGGGI---YVGPAVGVGVGA-GSSLFLI  186 (227)
Q Consensus       114 ~A~AA-SGGRiGGgSFrS~SssSspRSYs--~p~~~~ygYg~~gY~~SPfgy~GGGf---Fl~P~fGfGgGg-G~~~fli  186 (227)
                      .|+|| |||||||+|||+||..  +|+|+  .|+.++|+  +++|     +  ||||   |+||.+|+|+|+ |+|.+|+
T Consensus        43 ~a~aarSGGriGGgSfraps~~--sr~YS~~gpsGGgY~--gg~Y-----~--GGGfgfPfiip~~G~GGGfgGiFgilv  111 (334)
T COG4371          43 VAAAARSGGRIGGGSFRAPSGY--SRGYSGGGPSGGGYS--GGGY-----S--GGGFGFPFIIPGGGGGGGFGGIFGILV  111 (334)
T ss_pred             HHHHHhhCCCccCCCCCCCCCC--CCCcCCCCCCCCCCC--CCCC-----C--CCCcCcCeEeccCCcCCccccHHHHHH
Confidence            35555 9999999999999742  48998  35554433  2234     3  6776   999999998874 8899999


Q ss_pred             HHHHHHHHhhhhhcccCC-----CCCcccCCCceEEEEEeeeccc
Q 027132          187 LMGFAAFVLVSGFLSDRS-----DGSVLTATDKTSVIKLQVLDLR  226 (227)
Q Consensus       187 Li~iag~v~V~~F~~~~~-----~g~~~~~~~~VSV~kLQVGLLa  226 (227)
                      |++|+. ++|..||..-+     +.....++|+|.+.++||||||
T Consensus       112 f~aian-~vv~~~Rr~~ssGe~~g~~~~~S~ptv~~~~vQvgLLA  155 (334)
T COG4371         112 FGAIAN-GVVGMMRRNLSSGEARGLSSLGSSPTVQAVSVQVGLLA  155 (334)
T ss_pred             HHHHHH-HHHHHHHhcCCCCCcCCccccCCCCceeEEeeeehhhh
Confidence            999988 58899986311     1133346899999999999997

>PF07466 DUF1517: Protein of unknown function (DUF1517); InterPro: IPR010903 This family consists of several hypothetical glycine rich plant and bacterial proteins of around 300 residues in length

Probab=99.85  E-value=2.7e-21  Score=172.99  Aligned_cols=107  Identities=43%  Similarity=0.479  Sum_probs=70.8

Q ss_pred             hhhcCCcccCCCCCCCC-CCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCce---eeccccccccc-CchhHHHHHHHH
Q 027132          116 FAASGGRMGGRSFSSHS-SSSSSRTYMVEPRVGFSASAPYYAPSPFGGAGGGI---YVGPAVGVGVG-AGSSLFLILMGF  190 (227)
Q Consensus       116 ~AASGGRiGGgSFrS~S-ssSspRSYs~p~~~~ygYg~~gY~~SPfgy~GGGf---Fl~P~fGfGgG-gG~~~fliLi~i  190 (227)
                      +|+|||||||+||++|+ ++|+||+|+..+.+.+.+.. .|   +.+|.|||+   |++|+||+|+| +|++.+|||++|
T Consensus         1 aA~SGGR~GG~SFssps~ssSspssss~s~~~~~~~s~-~~---~~~y~Ggg~g~p~l~p~~G~Ggg~~gl~~iLIl~~I   76 (289)
T PF07466_consen    1 AARSGGRMGGGSFSSPSRSSSSPSSSSPSSSGSSSPSS-GY---GGGYSGGGFGFPFLGPFFGFGGGFGGLFDILILFGI   76 (289)
T ss_pred             CCccCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CC---CCCCCCCCcCcCccccccccCcccchHHHHHHHHHH
Confidence            36799999999999885 34666766543222111110 11   112224554   88999999986 366777777777


Q ss_pred             HHHHhhhhhcccC----CCCCcccCCCceEEEEEeeecccC
Q 027132          191 AAFVLVSGFLSDR----SDGSVLTATDKTSVIKLQVLDLRL  227 (227)
Q Consensus       191 ag~v~V~~F~~~~----~~g~~~~~~~~VSV~kLQVGLLa~  227 (227)
                      +. ++|+.|+..+    ........+++|||+|||||||+.
T Consensus        77 a~-~vv~~~r~~~~~~~~~~~~~~~~~~vsV~klQv~Ll~~  116 (289)
T PF07466_consen   77 AF-FVVRFFRRRRSGSQGSYGRGASNPKVSVVKLQVGLLAS  116 (289)
T ss_pred             HH-HHHHHHHhhcccccccccccccCCceEEEEeeehhccc
Confidence            76 5888887543    233455678999999999999974

The function of this family is unknown.

>COG4371 Predicted membrane protein [Function unknown]

Probab=82.24  E-value=1.9  Score=40.64  Aligned_cols=29  Identities=21%  Similarity=0.177  Sum_probs=13.8

Q ss_pred             chhHHHHHHHHHHHHhhhhhcc--cCCCCCc
Q 027132          180 GSSLFLILMGFAAFVLVSGFLS--DRSDGSV  208 (227)
Q Consensus       180 G~~~fliLi~iag~v~V~~F~~--~~~~g~~  208 (227)
                      ++.+|.=+.+|.-|++|..+..  .|+..+.
T Consensus        99 ~GGGfgGiFgilvf~aian~vv~~~Rr~~ss  129 (334)
T COG4371          99 GGGGFGGIFGILVFGAIANGVVGMMRRNLSS  129 (334)
T ss_pred             cCCccccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            3444444455555445555543  2555433

>PF07466 DUF1517: Protein of unknown function (DUF1517); InterPro: IPR010903 This family consists of several hypothetical glycine rich plant and bacterial proteins of around 300 residues in length

Probab=80.47  E-value=5.7  Score=36.51  Aligned_cols=10  Identities=20%  Similarity=0.142  Sum_probs=7.1

Q ss_pred             hcCCcccCCC
Q 027132          118 ASGGRMGGRS  127 (227)
Q Consensus       118 ASGGRiGGgS  127 (227)
                      +.||+-...+
T Consensus         7 R~GG~SFssp   16 (289)
T PF07466_consen    7 RMGGGSFSSP   16 (289)
T ss_pred             CcCCCCCCCC
Confidence            3688887765

The function of this family is unknown.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00