Citrus Sinensis ID: 027268

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-----
Protein Sequence
MALSITASSASVLSFSQSLSSPTQLFLANRPTYVSFNNNHDHPKSTVIRMGGGPRTYPGGVSKWQWKRMQAKKGKQLLKARLCRERHIYEMRKRAELKAAVSELERPWEAVEKAPNLFSVSADEQVKVLADRFQRPGGFDLWTESDGPQMFETPDGLPSARFFPKGVVHSVKPYGLIASKRNDLQSKEDNENGNGNLQEVSSTNGFNGKPPKRWRKRGNRKQNKD
Secondary Structure (PSIPRED)
cccEEEccccccEEcccccccccccccccccccEEccccccccccEEEEEccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHcccccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccEEEcccccHHHcccccccccccccccccccccccccccccccccHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
ccccEccccHHHHccccccccccccccccccccccccccccccccEEEEcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHcccccccccccHHHHHHHHHHHHcccccccccccccccEEEccccccccccccccccEEEEcEcEEEEcccccccccEccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
MALSITASSASVlsfsqslssptqlflanrptyvsfnnnhdhpkstvirmgggprtypggvsKWQWKRMQAKKGKQLLKARLCRERHIYEMRKRAELKAAVSELERpweavekapnlfsvsADEQVKVLADrfqrpggfdlwtesdgpqmfetpdglpsarffpkgvvhsvkpygliaskrndlqskednengngnlqevsstngfngkppkrwrkrgnrkqnkd
Flexible Loop (DISEMBL)
MALSITASSASVLSFSQSLSSPTQLFLANRPTYVsfnnnhdhpkstvirmgggprTYPGGVSKWQWKRMQAkkgkqllkarlCRERHIYEMRKRAELKAAVSELERPWEAVEKAPNLFSVSADEQVKVLADRFQRPGGFDLWTESDGPQMFETPDGLPSARFFPKGVVHSVKPYGLIASKRNDLQSKEDNENgngnlqevsstngfngkppkrwrkrgnrkqnkd
Low Complexity Region (SEG)
MAlsitassasvlsfsqslssptqlflANRPTYVSFNNNHDHPKSTVIRMGGGPRTYPGGVSKWQWKRMQAKKGKQLLKARLCRERHIYEMRKRAELKAAVSELERPWEAVEKAPNLFSVSADEQVKVLADRFQRPGGFDLWTESDGPQMFETPDGLPSARFFPKGVVHSVKPYGLIASKRNDLQSKEDNENGNGNLQEVSSTNGFNGKPPKRWRKRGNRKQNKD
Disordered region (IsUnstruct)
************************LFLANRPTYVSFN*********VIRMGGGPRTYPGGVSKWQWKRMQAKKGKQLLKARLCRERHIYEMRKRAELKAAVSELERPWEAVEKAPNLFSVSADEQVKVLADRFQRPGGFDLWT****************ARFFPKGVVHSVKPYGLI************************************************
Disordered Region (DISOPRED)
************LSFSQSLSSPTQLFLANRPTYVSFNNNHDHPKSTVIRMGGGPRTYPGGVSKWQWK******************RHIYEMRKR********************************KVLADRFQRPGGFDLWTESDGPQMFETPDGLPSARFFPKGVVHSVKPYGL*************************************************
Disordered Region (DISEMBL)
*********************PTQLFLANRPTYVSFNNNHDHPKSTVIRMGGGPRTYPGGVSKWQWK**********LKARLCRERHIYEMRKRAELKAAVSELERPWEAVEKAPNLFSVSADEQVKVLADRFQRPGGFDLWTESDGPQMFETPDGLPSARFFPKGVVHSVKPYGLIASKRNDLQSKEDNENGNGNLQEVSSTNGF*******************
Disordered Region (DISPRO)
*******SSASVLSFSQSLSSPTQLFLANRPTYVSFNNNHDHPKSTVIRMGGGPRTYPGGVSKWQWKRMQAKKGKQLLKARLCRERHIYEMRKRAELKAAVS**************LFSVSADEQVKVLADRFQRPGGFDLWTESDGPQMFETPDGLPSARFFPKGVVHSVKPYGLIASK*********************************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MALSITASSASVLSFSQSLSSPTQLFLANRPTYVSFNNNHDHPKSTVIRMGGGPRTYPGGVSKWQWKRMQAKKGKQLLKARLCRERHIYEMRKRAELKAAVSELERPWEAVEKAPNLFSVSADEQVKVLADRFQRPGGFDLWTESDGPQMFETPDGLPSARFFPKGVVHSVKPYGLIASKRNDLQSKEDNENGNGNLQEVSSTNGFNGKPPKRWRKRGNRKQNKD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	225	2.2.26 [Sep-21-2011]
O80792	845	Putative DEAD-box ATP-dep	no	no	0.413	0.110	0.433	4e-17
Q9C8S9	798	Probable DEAD-box ATP-dep	no	no	0.44	0.124	0.44	7e-17
Q6K7R9	811	DEAD-box ATP-dependent RN	no	no	0.417	0.115	0.425	9e-14

>sp|O80792|RH33_ARATH Putative DEAD-box ATP-dependent RNA helicase 33 OS=Arabidopsis thaliana GN=RH33 PE=3 SV=1

 Score = 88.6 bits (218), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 46/106 (43%), Positives = 64/106 (60%), Gaps = 13/106 (12%)

Query: 50  MGGGPRTYPGGVSKWQWKRMQAKKGKQLLKARLCRERHIYEMRKRAELKAAVSELERPW- 108
           MGGGPRT+PGG++KWQWKRM  KK ++     L +E+ +YE R R E++A +      W 
Sbjct: 76  MGGGPRTFPGGLNKWQWKRMHEKKAREKENKLLDQEKQLYEARIRTEIRAKM------WG 129

Query: 109 --EAVEKAPNLFS----VSADEQVKVLADRFQRPGGFDLWTESDGP 148
             ++ EK   L      +S  E +K LADRF + G  DLW ++DGP
Sbjct: 130 HPDSGEKTAKLKQSHGPMSPKEHIKTLADRFMKAGADDLWNDNDGP 175

Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 6EC: .EC: 4EC: .EC: 1EC: 3

>sp|Q9C8S9|RH48_ARATH Probable DEAD-box ATP-dependent RNA helicase 48 OS=Arabidopsis thaliana GN=RH48 PE=3 SV=1

 Score = 87.4 bits (215), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 44/100 (44%), Positives = 60/100 (60%), Gaps = 1/100 (1%)

Query: 50  MGGGPRTYPGGVSKWQWKRMQAKKGKQLLKARLCRERHIYEMRKRAELKAAVSELERPWE 109
           MGGGPRT+PGG++KWQWKRM  KK ++     L +E+ +YE R R E++A +       E
Sbjct: 26  MGGGPRTFPGGLNKWQWKRMHEKKAREKENKLLDQEKQLYEARIRTEIRAKMWGNPDSGE 85

Query: 110 AVEKAPNLFS-VSADEQVKVLADRFQRPGGFDLWTESDGP 148
              K+      +S  E +K LADRF + G  D W E+DGP
Sbjct: 86  KTAKSKQSHGPMSPKEHIKTLADRFMKAGAEDFWNENDGP 125

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 3

>sp|Q6K7R9|RH48_ORYSJ DEAD-box ATP-dependent RNA helicase 48 OS=Oryza sativa subsp. japonica GN=Os02g0826100 PE=2 SV=1

 Score = 77.0 bits (188), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 43/101 (42%), Positives = 57/101 (56%), Gaps = 7/101 (6%)

Query: 50  MGGGPRTYPGGVSKWQWKRMQAKKGKQLLKARLCRERHIYEMRKRAELKAAVSELERPWE 109
           MGGGPRT+PGG+SKWQ KRM  K  +   +  L  E+ +Y  R R+E++A+     R   
Sbjct: 1   MGGGPRTFPGGLSKWQHKRMHEKLARHKERGLLRHEKQLYLARLRSEIRAS-----RLPA 55

Query: 110 AVEKAPNLFS--VSADEQVKVLADRFQRPGGFDLWTESDGP 148
           A    P+      S+   ++ LADRF  PG  DLW E DGP
Sbjct: 56  AGASPPDDGDGPTSSRAHIRALADRFLLPGAEDLWNEDDGP 96

Oryza sativa subsp. japonica (taxid: 39947)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 3

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	225
255587290	436	ATP binding protein, putative [Ricinus c	0.857	0.442	0.674	5e-73
449516870	336	PREDICTED: uncharacterized LOC101220703	0.751	0.502	0.75	2e-68
225440518	274	PREDICTED: uncharacterized protein LOC10	0.871	0.715	0.651	3e-68
449460403	363	PREDICTED: uncharacterized protein LOC10	0.711	0.440	0.769	5e-67
358347741	534	hypothetical protein MTR_109s0001 [Medic	0.666	0.280	0.787	1e-66
297718792	326	plastid RNA-binding protein 1 [Nicotiana	0.826	0.570	0.666	6e-66
224090813	254	predicted protein [Populus trichocarpa]	0.755	0.669	0.711	8e-66
18404589	251	copper ion transmembrane transporter [Ar	0.604	0.541	0.860	8e-65
356503161	591	PREDICTED: uncharacterized protein LOC10	0.675	0.257	0.742	8e-65
297827339	395	hypothetical protein ARALYDRAFT_321495 [	0.622	0.354	0.842	1e-64

>gi|255587290|ref|XP_002534216.1| ATP binding protein, putative [Ricinus communis] gi|223525692|gb|EEF28167.1| ATP binding protein, putative [Ricinus communis]

 Score =  279 bits (714), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 137/203 (67%), Positives = 164/203 (80%), Gaps = 10/203 (4%)

Query: 1   MALSITASSASV-LSFSQSLSSPTQLFLANRPTYVSFNNNHDHPKSTVIRMGGGPRTYPG 59
           M+LS++ S  +   SFS++L+S     L+ +   +         K+TVIRMGGGPRTYPG
Sbjct: 1   MSLSMSISIPTTQFSFSKTLTSQNPFLLSLKTPPIP-------RKTTVIRMGGGPRTYPG 53

Query: 60  GVSKWQWKRMQAKKGKQLLKARLCRERHIYEMRKRAELKAAVSELERPWEAVEKAPNLFS 119
           GVSKWQWKRMQAKK KQLLKARLCRER IYEMRKRAELKAAVSELERPWE VE+APNLFS
Sbjct: 54  GVSKWQWKRMQAKKAKQLLKARLCRERQIYEMRKRAELKAAVSELERPWEVVERAPNLFS 113

Query: 120 VSADEQVKVLADRFQRPGGFDLWTESDGPQMFETPDGLPSARFFPKGVVHSVKPYGLIAS 179
           V ADEQVKVLADRFQ+PGGFDLW+E+DGPQ+F++PDGLPSARFFPKGVVHSVKPYGLI+ 
Sbjct: 114 VKADEQVKVLADRFQKPGGFDLWSENDGPQLFQSPDGLPSARFFPKGVVHSVKPYGLISG 173

Query: 180 KRNDL--QSKEDNENGNGNLQEV 200
              ++   ++ DN+N +G L++ 
Sbjct: 174 DIGEVGFDNESDNDNKDGYLRDT 196

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449516870|ref|XP_004165469.1| PREDICTED: uncharacterized LOC101220703 [Cucumis sativus]

 Score =  264 bits (675), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 135/180 (75%), Positives = 147/180 (81%), Gaps = 11/180 (6%)

Query: 1   MALSITASSASVLSFSQSLSSPTQL-FLANRPTYVSFNNNHDHPKST-VIRMGGGPRTYP 58
           +A+SI  S   + SFSQSL+    L +L NR   ++        K+T +IRMGGGPRTYP
Sbjct: 8   LAISI-PSRPPLFSFSQSLTGANHLSYLPNRMPILT--------KTTPLIRMGGGPRTYP 58

Query: 59  GGVSKWQWKRMQAKKGKQLLKARLCRERHIYEMRKRAELKAAVSELERPWEAVEKAPNLF 118
           GGVSKWQWKRMQAKKGKQLLKARLCRER IYEMRKRAELKAAVS+LERPWE VEKAPNLF
Sbjct: 59  GGVSKWQWKRMQAKKGKQLLKARLCRERQIYEMRKRAELKAAVSQLERPWEVVEKAPNLF 118

Query: 119 SVSADEQVKVLADRFQRPGGFDLWTESDGPQMFETPDGLPSARFFPKGVVHSVKPYGLIA 178
           SV ADEQVKVLADRFQRPGGFDLWTE DGPQ+FET D LPSARFFPKGVVHSV+PY  I 
Sbjct: 119 SVGADEQVKVLADRFQRPGGFDLWTERDGPQLFETVDELPSARFFPKGVVHSVRPYRSIT 178

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225440518|ref|XP_002274977.1| PREDICTED: uncharacterized protein LOC100240813 [Vitis vinifera] gi|147770641|emb|CAN73407.1| hypothetical protein VITISV_024372 [Vitis vinifera]

 Score =  263 bits (673), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 129/198 (65%), Positives = 150/198 (75%), Gaps = 2/198 (1%)

Query: 13  LSFSQSLSSPTQLFLANRPTYVSFNNNHDHPKSTVIRMGGGPRTYPGGVSKWQWKRMQAK 72
           LSFS+ L+ P   FL  + + +S        K+T+IRMGGGPRTYPGGVSKWQWKRMQAK
Sbjct: 15  LSFSRVLTGPDNAFLETKLSQLSLGTAQFPAKTTLIRMGGGPRTYPGGVSKWQWKRMQAK 74

Query: 73  KGKQLLKARLCRERHIYEMRKRAELKAAVSELERPWEAVEKAPNLFSVSADEQVKVLADR 132
           K KQLLKARLCRER +YEMRKRAELKAAVSELERPWE VE+AP L SVSADEQ+KVLADR
Sbjct: 75  KAKQLLKARLCRERQMYEMRKRAELKAAVSELERPWEVVERAPTLLSVSADEQLKVLADR 134

Query: 133 FQRPGGFDLWTESDGPQMFETPDGLPSARFFPKGVVHSVKPYGL--IASKRNDLQSKEDN 190
           FQRP GFDLW+E DGPQ+F+  DG+PSARFFPKGVVHS+KPY    +A +R+  + + D 
Sbjct: 135 FQRPDGFDLWSEKDGPQLFDKADGVPSARFFPKGVVHSIKPYEAREMAKERDGFRKQVDL 194

Query: 191 ENGNGNLQEVSSTNGFNG 208
           +N         S  G NG
Sbjct: 195 KNSMDEEGNSYSGKGGNG 212

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449460403|ref|XP_004147935.1| PREDICTED: uncharacterized protein LOC101220703 [Cucumis sativus]

 Score =  259 bits (663), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 127/165 (76%), Positives = 139/165 (84%), Gaps = 5/165 (3%)

Query: 14  SFSQSLSSPTQLFLANRPTYVSFNNNHDHPKSTVIRMGGGPRTYPGGVSKWQWKRMQAKK 73
           SF+  ++ P  L +A   T +S  + +   + T+IRMGGGPRTYPGGVSKWQWKRMQAKK
Sbjct: 46  SFATFITLPLGLSIA---TLISSPSKYQ--RRTLIRMGGGPRTYPGGVSKWQWKRMQAKK 100

Query: 74  GKQLLKARLCRERHIYEMRKRAELKAAVSELERPWEAVEKAPNLFSVSADEQVKVLADRF 133
           GKQLLKARLCRER IYEMRKRAELKAAVS+LERPWE VEKAPNLFSV ADEQVKVLADRF
Sbjct: 101 GKQLLKARLCRERQIYEMRKRAELKAAVSQLERPWEVVEKAPNLFSVGADEQVKVLADRF 160

Query: 134 QRPGGFDLWTESDGPQMFETPDGLPSARFFPKGVVHSVKPYGLIA 178
           QRPGGFDLWTE DGPQ+FET D LPSARFFPKGVVHSV+PY  I 
Sbjct: 161 QRPGGFDLWTERDGPQLFETVDELPSARFFPKGVVHSVRPYRSIT 205

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358347741|ref|XP_003637912.1| hypothetical protein MTR_109s0001 [Medicago truncatula] gi|355503847|gb|AES85050.1| hypothetical protein MTR_109s0001 [Medicago truncatula]

 Score =  258 bits (658), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 122/155 (78%), Positives = 134/155 (86%), Gaps = 5/155 (3%)

Query: 44  KSTVIRMGGGPRTYPGGVSKWQWKRMQAKKGKQLLKARLCRERHIYEMRKRAELKAAVSE 103
           +STVIRMGGGPRTYPGGVSKWQWKRMQAKK KQLLKARLCRER IYEMRKRAELKAAVS+
Sbjct: 45  RSTVIRMGGGPRTYPGGVSKWQWKRMQAKKAKQLLKARLCRERQIYEMRKRAELKAAVSD 104

Query: 104 LERPWEAVEKAPNLFSVSADEQVKVLADRFQRPGGFDLWTESDGPQMFETPDGLPSARFF 163
           LERPWE VEK P LFS+ ADEQ+KVLADRFQ+PGGFDLWTE+DGPQ+F+TPD LPSARFF
Sbjct: 105 LERPWEVVEKPPKLFSIKADEQLKVLADRFQKPGGFDLWTENDGPQLFQTPDELPSARFF 164

Query: 164 PKGVVHSVKPYGLIASKRNDLQSKED---NENGNG 195
           PKGVVHS+KPY  + S  +DL    D   N+ G G
Sbjct: 165 PKGVVHSIKPYMKVTS--DDLLEGSDVLENDGGEG 197

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297718792|gb|ADI50287.1| plastid RNA-binding protein 1 [Nicotiana benthamiana]

 Score =  256 bits (653), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 128/192 (66%), Positives = 151/192 (78%), Gaps = 6/192 (3%)

Query: 13  LSFSQSLSSPTQLFLANRPTYVSFNNNH--DHP-KSTVIRMGGGPRTYPGGVSKWQWKRM 69
           LS S+++S  +QLFL+ +   ++ +     + P KS+ IRMGGGPRTYPGGVSKWQWKRM
Sbjct: 16  LSSSKTISGASQLFLSTKFCTLNLSTTTITNIPYKSSTIRMGGGPRTYPGGVSKWQWKRM 75

Query: 70  QAKKGKQLLKARLCRERHIYEMRKRAELKAAVSELERPWEAVEKAPNLFSVSADEQVKVL 129
           QAKK KQLLKARL RER IYEMRKRAELKAAVSELERPWE VEKAP LFSVSADEQ+ VL
Sbjct: 76  QAKKAKQLLKARLARERQIYEMRKRAELKAAVSELERPWEVVEKAPTLFSVSADEQLSVL 135

Query: 130 ADRFQRPGGFDLWTESDGPQMFETPDGLPSARFFPKGVVHSVKPYGLIASKRNDLQSKED 189
           ADRFQ+PGGFD+W++ DGP++F+  DGLPSARFFPKGVVHS+KPYG I    N +   ED
Sbjct: 136 ADRFQKPGGFDMWSDKDGPELFKPEDGLPSARFFPKGVVHSIKPYGKI---ENAVGGFED 192

Query: 190 NENGNGNLQEVS 201
           + N   + Q  S
Sbjct: 193 SSNFGSDSQSES 204

Source: Nicotiana benthamiana

Species: Nicotiana benthamiana

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224090813|ref|XP_002309092.1| predicted protein [Populus trichocarpa] gi|222855068|gb|EEE92615.1| predicted protein [Populus trichocarpa]

 Score =  255 bits (652), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 128/180 (71%), Positives = 146/180 (81%), Gaps = 10/180 (5%)

Query: 1   MALSITASSASVLSFSQSLSSPTQLFLANRPTYVSFNNNHDHPKSTVI-RMGGGPRTYPG 59
           M+LSI       LSFS++LSS   LF   +P  ++       PK+T+I RMGGGPRT+PG
Sbjct: 1   MSLSIPTLH---LSFSKTLSSQNPLFFP-KPFSLTL-----PPKTTIIIRMGGGPRTFPG 51

Query: 60  GVSKWQWKRMQAKKGKQLLKARLCRERHIYEMRKRAELKAAVSELERPWEAVEKAPNLFS 119
           GVSKWQWKRMQ  K KQLLKARLCRER IYEMRKRAELKAAVSELERPWE V+KAP LFS
Sbjct: 52  GVSKWQWKRMQKNKAKQLLKARLCRERQIYEMRKRAELKAAVSELERPWEVVDKAPKLFS 111

Query: 120 VSADEQVKVLADRFQRPGGFDLWTESDGPQMFETPDGLPSARFFPKGVVHSVKPYGLIAS 179
           V ADEQVKVLADRFQ+PGGFDLW+E DGPQ+FETPDG+PSARFFP GVV +VKPYG +++
Sbjct: 112 VGADEQVKVLADRFQKPGGFDLWSERDGPQLFETPDGVPSARFFPTGVVQTVKPYGKVSA 171

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18404589|ref|NP_565874.1| copper ion transmembrane transporter [Arabidopsis thaliana] gi|21618236|gb|AAM67286.1| unknown [Arabidopsis thaliana] gi|330254371|gb|AEC09465.1| copper ion transmembrane transporter [Arabidopsis thaliana]

 Score =  252 bits (643), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 117/136 (86%), Positives = 126/136 (92%)

Query: 44  KSTVIRMGGGPRTYPGGVSKWQWKRMQAKKGKQLLKARLCRERHIYEMRKRAELKAAVSE 103
           KSTVIRMGGGPRT+PGGVSKWQWKRMQAKK KQLLKARLCRER IYEMRKRAELKAAV+E
Sbjct: 44  KSTVIRMGGGPRTFPGGVSKWQWKRMQAKKQKQLLKARLCRERQIYEMRKRAELKAAVAE 103

Query: 104 LERPWEAVEKAPNLFSVSADEQVKVLADRFQRPGGFDLWTESDGPQMFETPDGLPSARFF 163
           LERPWE + K PNLFSV ADEQVKVLADRFQ+PGGFDLWT+ DGPQ+FE+ D LPSARFF
Sbjct: 104 LERPWEPIHKPPNLFSVCADEQVKVLADRFQKPGGFDLWTDRDGPQLFESVDDLPSARFF 163

Query: 164 PKGVVHSVKPYGLIAS 179
           PKGVVHSVKPYG ++S
Sbjct: 164 PKGVVHSVKPYGRLSS 179

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356503161|ref|XP_003520380.1| PREDICTED: uncharacterized protein LOC100787185 [Glycine max]

 Score =  252 bits (643), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 127/171 (74%), Positives = 136/171 (79%), Gaps = 19/171 (11%)

Query: 13  LSFSQS--LSSPTQ--LFLANRPTYVSFNNNHDHPKSTVIRMGGGPRTYPGGVSKWQWKR 68
           LSFSQS  L +P +   FL N P   S          T+IRMGGGPRTYPGGVSKW WKR
Sbjct: 14  LSFSQSPFLHNPIKPLHFLPNPPARAS----------TIIRMGGGPRTYPGGVSKWVWKR 63

Query: 69  MQAKKGKQLLKARLCRERHIYEMRKRAELKAAVSELERPWEAVEK-----APNLFSVSAD 123
           MQAKK KQL+KARLCRER IYEMRKRAELKAAVSELERPWE VE+     APNLFS+ AD
Sbjct: 64  MQAKKAKQLMKARLCRERQIYEMRKRAELKAAVSELERPWEVVEREASASAPNLFSIGAD 123

Query: 124 EQVKVLADRFQRPGGFDLWTESDGPQMFETPDGLPSARFFPKGVVHSVKPY 174
           EQVKVLADRFQRPGGFDLW+E DGP +FE+PD LPSARFFPKGVVHSVKPY
Sbjct: 124 EQVKVLADRFQRPGGFDLWSERDGPVLFESPDELPSARFFPKGVVHSVKPY 174

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297827339|ref|XP_002881552.1| hypothetical protein ARALYDRAFT_321495 [Arabidopsis lyrata subsp. lyrata] gi|297327391|gb|EFH57811.1| hypothetical protein ARALYDRAFT_321495 [Arabidopsis lyrata subsp. lyrata]

 Score =  251 bits (642), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 118/140 (84%), Positives = 128/140 (91%)

Query: 44  KSTVIRMGGGPRTYPGGVSKWQWKRMQAKKGKQLLKARLCRERHIYEMRKRAELKAAVSE 103
           KSTVIRMGGGPRT+PGGVSKWQWKRMQAKK KQLLKARLCRER IYEMRKRAELKAAV+E
Sbjct: 179 KSTVIRMGGGPRTFPGGVSKWQWKRMQAKKQKQLLKARLCRERQIYEMRKRAELKAAVAE 238

Query: 104 LERPWEAVEKAPNLFSVSADEQVKVLADRFQRPGGFDLWTESDGPQMFETPDGLPSARFF 163
           LERPWE ++K PNLFSV ADEQVKVLADRFQ+PGGFDLWT+ DGPQ+FE+ D LPSARFF
Sbjct: 239 LERPWEPIQKPPNLFSVCADEQVKVLADRFQKPGGFDLWTDRDGPQLFESVDDLPSARFF 298

Query: 164 PKGVVHSVKPYGLIASKRND 183
           PKGVVHSVKPYG ++S   D
Sbjct: 299 PKGVVHSVKPYGRLSSTSVD 318

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	225
TAIR|locus:2065664	251	emb1513 "AT2G37920" [Arabidops	0.773	0.693	0.707	1.8e-62
TAIR|locus:2038431	798	AT1G63250 [Arabidopsis thalian	0.44	0.124	0.44	1.2e-19
TAIR|locus:2054688	845	AT2G07750 [Arabidopsis thalian	0.44	0.117	0.44	1.4e-19

TAIR|locus:2065664 emb1513 "AT2G37920" [Arabidopsis thaliana (taxid:3702)]

 Score = 638 (229.6 bits), Expect = 1.8e-62, P = 1.8e-62
 Identities = 128/181 (70%), Positives = 140/181 (77%)

Query:    44 KSTVIRMGGGPRTYPGGVSKWQWKRMQAKKGKQLLKARLCRERHIYEMRKRAELKAAVSE 103
             KSTVIRMGGGPRT+PGGVSKWQWKRMQAKK KQLLKARLCRER IYEMRKRAELKAAV+E
Sbjct:    44 KSTVIRMGGGPRTFPGGVSKWQWKRMQAKKQKQLLKARLCRERQIYEMRKRAELKAAVAE 103

Query:   104 LERPWEAVEKAPNLFSVSADEQVKVLADRFQRPGGFDLWTESDGPQMFETPDGLPSARFF 163
             LERPWE + K PNLFSV ADEQVKVLADRFQ+PGGFDLWT+ DGPQ+FE+ D LPSARFF
Sbjct:   104 LERPWEPIHKPPNLFSVCADEQVKVLADRFQKPGGFDLWTDRDGPQLFESVDDLPSARFF 163

Query:   164 PKGVVHSVKPYGLIASKR----NDLQSKEDNENGNG-NLQEVSSTNGFNGKPPKRWRKRG 218
             PKGVVHSVKPYG ++S       D    +D E G     + V       GK  +R   RG
Sbjct:   164 PKGVVHSVKPYGRLSSSSVVDDGDESEVKDEEIGKKLRGRRVRKRGDDGGK--RRTENRG 221

Query:   219 N 219
             N
Sbjct:   222 N 222

GO:0005375 "copper ion transmembrane transporter activity" evidence=ISS

GO:0009793 "embryo development ending in seed dormancy" evidence=NAS

TAIR|locus:2038431 AT1G63250 [Arabidopsis thaliana (taxid:3702)]

 Score = 227 (85.0 bits), Expect = 1.2e-19, Sum P(2) = 1.2e-19
 Identities = 44/100 (44%), Positives = 60/100 (60%)

Query:    50 MGGGPRTYPGGVSKWQWKRMQAKKGKQLLKARLCRERHIYEMRKRAELKAAVSELERPWE 109
             MGGGPRT+PGG++KWQWKRM  KK ++     L +E+ +YE R R E++A +       E
Sbjct:    26 MGGGPRTFPGGLNKWQWKRMHEKKAREKENKLLDQEKQLYEARIRTEIRAKMWGNPDSGE 85

Query:   110 AVEKAPNLFS-VSADEQVKVLADRFQRPGGFDLWTESDGP 148
                K+      +S  E +K LADRF + G  D W E+DGP
Sbjct:    86 KTAKSKQSHGPMSPKEHIKTLADRFMKAGAEDFWNENDGP 125

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0004386 "helicase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS

TAIR|locus:2054688 AT2G07750 [Arabidopsis thaliana (taxid:3702)]

 Score = 226 (84.6 bits), Expect = 1.4e-19, Sum P(2) = 1.4e-19
 Identities = 44/100 (44%), Positives = 60/100 (60%)

Query:    50 MGGGPRTYPGGVSKWQWKRMQAKKGKQLLKARLCRERHIYEMRKRAELKAAVSELERPWE 109
             MGGGPRT+PGG++KWQWKRM  KK ++     L +E+ +YE R R E++A +       E
Sbjct:    76 MGGGPRTFPGGLNKWQWKRMHEKKAREKENKLLDQEKQLYEARIRTEIRAKMWGHPDSGE 135

Query:   110 AVEKAPNLFS-VSADEQVKVLADRFQRPGGFDLWTESDGP 148
                K       +S  E +K LADRF + G  DLW ++DGP
Sbjct:   136 KTAKLKQSHGPMSPKEHIKTLADRFMKAGADDLWNDNDGP 175

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0004386 "helicase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	emb1513	emb1513 (embryo defective 1513); copper ion transmembrane transporter; embryo defective 1513 (emb1513); FUNCTIONS IN- copper ion transmembrane transporter activity; INVOLVED IN- embryonic development ending in seed dormancy; EXPRESSED IN- 22 plant structures; EXPRESSED DURING- 13 growth stages; BEST Arabidopsis thaliana protein match is- DEAD box RNA helicase, putative (TAIR-AT2G07750.1); Has 26 Blast hits to 26 proteins in 5 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source- NCBI BLink). (251 aa)
		(Arabidopsis thaliana)
Predicted Functional Partners:
	emb2731	emb2731 (embryo defective 2731); embryo defective 2731 (emb2731); FUNCTIONS IN- molecular_funct [...] (208 aa)							•		0.821
	emb2735	emb2735 (embryo defective 2735); embryo defective 2735 (emb2735); FUNCTIONS IN- molecular_funct [...] (162 aa)							•		0.821
	emb2170	emb2170 (embryo defective 2170); embryo defective 2170 (emb2170); FUNCTIONS IN- molecular_funct [...] (248 aa)							•		0.821
	EMB2743	EMB2743 (EMBRYO DEFECTIVE 2743); EMBRYO DEFECTIVE 2743 (EMB2743); FUNCTIONS IN- molecular_funct [...] (103 aa)							•		0.788
	MIRO1	MIRO1 (Miro-related GTP-ase 1); GTP binding; Encodes a protein with similarity to GTPases that [...] (648 aa)							•		0.659
	emb2184	emb2184 (embryo defective 2184); structural constituent of ribosome; embryo defective 2184 (emb [...] (144 aa)				•			•		0.548
	AT5G02160	unknown protein; unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biolog [...] (129 aa)				•					0.504
	AT5G53490	thylakoid lumenal 17.4 kDa protein, chloroplast; thylakoid lumenal 17.4 kDa protein, chloroplas [...] (236 aa)				•					0.469
	emb2394	emb2394 (embryo defective 2394); structural constituent of ribosome; embryo defective 2394 (emb [...] (223 aa)				•			•		0.462
	AT1G73655	FK506 binding / peptidyl-prolyl cis-trans isomerase; FK506 binding / peptidyl-prolyl cis-trans [...] (234 aa)				•					0.446

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	225
KOG0342	543	consensus ATP-dependent RNA helicase pitchoune [RN	98.27

>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]

Probab=98.27  E-value=8.3e-08  Score=92.20  Aligned_cols=136  Identities=17%  Similarity=-0.008  Sum_probs=124.1

Q ss_pred             CCCCc-eEEeeCCCcccCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCchhhccCCCCCC
Q 027268           41 DHPKS-TVIRMGGGPRTYPGGVSKWQWKRMQAKKGKQLLKARLCRERHIYEMRKRAELKAAVSELERPWEAVEKAPNLFS  119 (225)
Q Consensus        41 ~~~~~-~~irMGGGPRTFPGGvsKWQWKRMqeKKAkqk~k~~L~rErQLYe~R~Raeiraa~~~lerPwe~~~~ap~l~~  119 (225)
                      ++-.+ ++..+.|+++||+..+..|||..+...+.+..-.++++...+-+.|++.+|.++.+.+.+.+|....-..+.++
T Consensus       117 l~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~vlIi~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~  196 (543)
T KOG0342|consen  117 LEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGVLIICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFS  196 (543)
T ss_pred             CCCccceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeEEEecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccch
Confidence            33334 44569999999999999999999999999999999999999999999999999999999999998888899999


Q ss_pred             CChhHHHHHhhhhhcCCCcccCCCCCCCC-------ccccCCCCCCCccccCCcceeeccccch
Q 027268          120 VSADEQVKVLADRFQRPGGFDLWTESDGP-------QMFETPDGLPSARFFPKGVVHSVKPYGL  176 (225)
Q Consensus       120 ~sade~iKaLADRF~kpGa~DLWn~~DGP-------~~f~~~~~~psarffpk~~vhsvkpy~~  176 (225)
                      +.++...|.....+.+||....|-+|+.+       +++-..+++..+..|+..+.|.|+++.+
T Consensus       197 ~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~lvlDEADrlLd~GF~~di~~Ii~~lpk  260 (543)
T KOG0342|consen  197 VEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCLVLDEADRLLDIGFEEDVEQIIKILPK  260 (543)
T ss_pred             HHHHHhhccccEEEeCCchHHhHhhcCCcchhhccceeEeecchhhhhcccHHHHHHHHHhccc
Confidence            99999999999999999999999999999       4445567899999999999999999975

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	225
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.5 bits (99), Expect = 7e-05
 Identities = 28/188 (14%), Positives = 51/188 (27%), Gaps = 64/188 (34%)

Query: 60  GVSKWQ-WKRMQAKKGKQLLKARL-----CRERHIYEM----RKRAELKAAVSELERPWE 109
           G++ W  WK +   K   ++++ L        R +++        A +   +  L   W 
Sbjct: 340 GLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTIL--LSLIWF 397

Query: 110 A------------------VEKAPNLFSVS-----------ADEQV---KVLADRFQRPG 137
                              VEK P   ++S            + +    + + D +  P 
Sbjct: 398 DVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPK 457

Query: 138 GFDLWTES----DG------------PQMFETPDGLPSA----RFFPKGVVHSVKPYGLI 177
            FD         D              +  E            RF  + + H    +   
Sbjct: 458 TFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNAS 517

Query: 178 ASKRNDLQ 185
            S  N LQ
Sbjct: 518 GSILNTLQ 525

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00