Citrus Sinensis ID: 027350

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220----
Protein Sequence
MAAEEEEEAKQLQQLLRLYIGMSFSLFLASLPKNSSQAKEELKARLRAAEEQLKQMKSRRKEDSKANARVVEIFASHRNAWQAEEKRLLQQIDAATEEMASLRSKIDELEREKLESDKRVQELEDMIGFMSRRGCEFEVEQQQQQHYHQHQEEEEEEFGVCESRECYGGANDGQIGNFGFSSEFLASASKFWTERASSIWQDVQYESQYESLESIYHMKHFVAR
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHccHHHHHHHHHHcccHHHHHHcccccHHHcccccHHHcccccccHHHHHHHcHHHHHHcccHHHHcccccccccHHHHHcccccccc
Coil and Loop (DISEMBL)
MAAEEEEEAKQLQQLLRLYIGMSFSLFLaslpknssQAKEELKARLRAAEEQLKQMKSRRKEDSKANARVVEIFASHRNAWQAEEKRLLQQIDAATEEMASLRSKIDELEREKLESDKRVQELEDMIGFmsrrgcefEVEQQQQQHYHQHqeeeeeefgvcesrecyggandgqignfgfSSEFLASASKFWTERASSIWQDVQYESQYESLESIYHMKHFVAR
Flexible Loop (DISEMBL)
MAAEEEEEAKQLQQLLRLYIGMSFSLFLASLPKNSSQAKEELKARLRAAEEQLKQmksrrkedskanARVVEIFASHRNAWQAEEKRLLQQIDAATEEMASLRSKidelereklesdkrvQELEDMIGFMSRRGCEFEVEQQQQQHYHQHQEEEEEEFGVCESRECYGGANDGQIGNFGFSSEFLASASKFWTERASSIWQDVQYESQYESLESIYHMKHFVAR
Low Complexity Region (SEG)
MaaeeeeeakqlqqllRLYIGMSFSLFLASLPKNSSQakeelkarlraaeeQLKQMKSRRKEDSKANARVVEIFASHRNAWQAEEKRLLQQIDAATEEMASLRSKIDELEREKLESDKRVQELEDMIGFMSRRGCEFEVeqqqqqhyhqhqeeeeeeFGVCESRECYGGANDGQIGNFGFSSEFLASASKFWTERASSIWQDVQYESQYESLESIYHMKHFVAR
Disordered region (IsUnstruct)
************QQLLRLYIGMSFSLFLAS***************************************VVEIFASHRNAW****************************************************************************FGVCESRECYGGANDGQIGNFGFSSEFLASASKFWTERASSIWQDVQYESQYESLESIYHMKHF***
Disordered Region (DISOPRED)
**************LLRLYIGMSFSLFLAS***************************************VVEIFASHRNA*Q***KRLLQQIDAATEEMASLR************************************************************************GNFGFSSEFLASAS*FWT*RASSIWQDVQYESQYESLESIYHMKHF***
Disordered Region (DISEMBL)
***********LQQLLRLYIGMSFSLFLASLP************RLRAAEEQ**************NARVVEIFASHRNAWQAEEKRLLQQIDAATEEMASLRSKIDELEREKLESDKRVQELEDMIGFMSRRGCE************************CESRECYGGANDGQIGNFGFSSEFLASASKFWTERASSIWQDVQYESQYESLESIYHMKHFVAR
Disordered Region (DISPRO)
*******EAKQLQQLLRLYIGMSFSLFLASLPKNSSQAKEELKARLRAAEEQLKQMKSRRKEDSKANARVVEIFASHRNAWQAEEKRLLQQIDAATEEMASLRSKIDELEREKLESDKRVQELEDMIGFMSRRGC*FEV**QQQQ***************CESRECYGGANDGQIGNFGFSSEFLASASKFWTERASSIWQDVQYESQYESLESIYHMKHFV**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MxxxxxxxxxxxxxxxxxxxxxSFSLFLASLPKNSSQAxxxxxxxxxxxxxxxxxxxxxxxxxxxxNARVVEIFASHxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxIGFMSRRGCEFEVEQQQQQHYHQHQEEEEEEFGVCESRECYGGANDGQIGNFGFSSEFLASASKFWTERASSIWQDVQYESQYESLESIYHMKHFVAR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	224
356508218	418	PREDICTED: uncharacterized protein LOC10	0.924	0.495	0.522	6e-45
224139126	399	predicted protein [Populus trichocarpa]	0.843	0.473	0.472	3e-39
357484601	390	hypothetical protein MTR_5g026680 [Medic	0.825	0.474	0.444	5e-38
297819116	397	hypothetical protein ARALYDRAFT_484970 [	0.808	0.455	0.438	7e-32
225427490	413	PREDICTED: uncharacterized protein LOC10	0.691	0.375	0.427	6e-31
7339491	388	putative protein [Arabidopsis thaliana]	0.821	0.474	0.430	2e-29
42565618	389	Ribonuclease P protein subunit P38-relat	0.821	0.473	0.430	2e-29
147835125	146	hypothetical protein VITISV_015804 [Viti	0.383	0.589	0.534	8e-14
147774668	86	hypothetical protein VITISV_022430 [Viti	0.316	0.825	0.577	5e-12
356531517	249	PREDICTED: uncharacterized protein LOC10	0.191	0.172	0.708	2e-09

>gi|356508218|ref|XP_003522856.1| PREDICTED: uncharacterized protein LOC100806481 [Glycine max]

 Score =  186 bits (472), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 129/247 (52%), Positives = 157/247 (63%), Gaps = 40/247 (16%)

Query: 6   EEEAKQLQ----QLLRLYIGMSFSLFLASLPKNSSQAKEELKAR---LRAAE--EQLKQM 56
           EEE  +LQ    +L   YIG SFS+FLA L  NS  A +  K R   LRAAE  E+L+QM
Sbjct: 3   EEEKHRLQEDTDKLFCSYIGASFSMFLAMLANNSVPALQG-KVRSLSLRAAEAAEELRQM 61

Query: 57  KSRRKEDSKANARVVEIFASHRNAWQAEEKRLLQQIDAATEEMASLRSKIDELEREKLES 116
           KSRR+EDSKANARVVEIFASHRNAWQAEEKRLLQQIDAA EE+A LR ++ ELE      
Sbjct: 62  KSRRQEDSKANARVVEIFASHRNAWQAEEKRLLQQIDAAAEEIACLRGRVAELEDAAAHG 121

Query: 117 DKRVQELEDMIGFMSRRGCEFEVEQQQQQHYHQHQE-----------------EEEEEFG 159
           ++ V E ++MIGFMSRR  E  +  ++++ Y +  E                 EEEEE  
Sbjct: 122 ERDVAERDEMIGFMSRRIEEEGLGGRERERYGKKSEEWFQKVEDMVGSTATSLEEEEEAD 181

Query: 160 VC--ESRECYGGANDGQIGNFGFSSEFLASASKFWTERASSIWQDVQYESQYESLESIYH 217
           V   E    + G N+      GF S+F+ASASKFW E+A S+ QDV    QYESLES+Y+
Sbjct: 182 VIYEEQHSQHFGNNN------GFDSKFMASASKFWAEKA-SLCQDV----QYESLESMYN 230

Query: 218 MKHFVAR 224
            KHFVAR
Sbjct: 231 TKHFVAR 237

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224139126|ref|XP_002326774.1| predicted protein [Populus trichocarpa] gi|222834096|gb|EEE72573.1| predicted protein [Populus trichocarpa]

 Score =  167 bits (423), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 113/239 (47%), Positives = 136/239 (56%), Gaps = 50/239 (20%)

Query: 4   EEEEEAKQLQQLLRLYIGMSFSLFLASLPKNSSQAKEELKARLRA-------AEEQLKQM 56
           +++EE  +  +LL  Y+G+SFSLFLA LP NS      L+ ++R        AEEQLKQM
Sbjct: 13  QDQEEKPREDKLLSSYLGLSFSLFLAILPPNSISLIPNLQTQIRNLSIRLLQAEEQLKQM 72

Query: 57  KSRRKEDSKANARVVEIFASHRNAWQAEEKRLLQQIDAATEEMASLRSKIDELEREKLES 116
           KSRRKEDSKANARVVEIFASHRNAWQAEEKRLLQQID A+EE++SLR+K ++ EREK E 
Sbjct: 73  KSRRKEDSKANARVVEIFASHRNAWQAEEKRLLQQIDFASEEVSSLRAKFEDFEREKEEW 132

Query: 117 DKRVQEL-------EDMIGFMSRR----GCEFEVEQQQQQHYHQHQEEEEEEFGVCESRE 165
             ++Q+L       E+MIGFMSR     G EF               EEE  F +     
Sbjct: 133 QGKIQDLEREVGEREEMIGFMSRNAVAGGSEF------------VGGEEESGFALL---- 176

Query: 166 CYGGANDGQIGNFGFSSEFLASASKFWTERASSIWQDVQYESQYESLESIYHMKHFVAR 224
                         FS   L     F          DVQY+S     ES+YHMKHFVAR
Sbjct: 177 ------------LIFSVPSLQIHLNFGDGSYIIFLGDVQYDSH----ESLYHMKHFVAR 219

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357484601|ref|XP_003612588.1| hypothetical protein MTR_5g026680 [Medicago truncatula] gi|355513923|gb|AES95546.1| hypothetical protein MTR_5g026680 [Medicago truncatula]

 Score =  163 bits (412), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 108/243 (44%), Positives = 146/243 (60%), Gaps = 58/243 (23%)

Query: 5   EEEEAKQLQQLLRLYIGMSFSLFLASLPKNSSQAKEELKARLRAAEEQLKQMKSRRKEDS 64
           E++E +++++L   YIG+SFS+FLA LP N    +E  +  +RA EE+L+Q+KSRR+ED 
Sbjct: 3   EQDEHEEMRKLFSSYIGLSFSVFLALLPTN---LREHSQRTIRA-EEELRQLKSRRQEDY 58

Query: 65  KANARVVEIFASHRNAWQAEEKRLLQQIDAATEEMASLR-------SKIDELEREKLESD 117
           KANARV EIFASHRN+W+ EEKRLL++IDAA+EE+  LR       +++++LERE +E D
Sbjct: 59  KANARVAEIFASHRNSWRDEEKRLLRRIDAASEEIVRLRAVVEDSKARVEDLEREVVERD 118

Query: 118 KRVQELEDMIGFMSRRGCEFEVEQQQQQHYHQHQEEEEEEFGVCESRECYGGANDGQIGN 177
                  +MIGF+SRR                   +EEE  G C SRE   G    ++  
Sbjct: 119 -------EMIGFISRRF------------------QEEEGLGGCGSREDMVGNTAEEVDV 153

Query: 178 F----------------GFSSEFLASASKFWTERASSIWQDVQYESQYESLESIYHMKHF 221
                            GF SEF +  SKFW E+A S+WQDV    QYESLES+Y+ K F
Sbjct: 154 IYQQQQQQQQHNQHLPNGFDSEF-SGGSKFWAEKA-SLWQDV----QYESLESMYNTKQF 207

Query: 222 VAR 224
           VAR
Sbjct: 208 VAR 210

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297819116|ref|XP_002877441.1| hypothetical protein ARALYDRAFT_484970 [Arabidopsis lyrata subsp. lyrata] gi|297323279|gb|EFH53700.1| hypothetical protein ARALYDRAFT_484970 [Arabidopsis lyrata subsp. lyrata]

 Score =  142 bits (359), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 97/221 (43%), Positives = 123/221 (55%), Gaps = 40/221 (18%)

Query: 11  QLQQLLRLYIGMSFSLFLASLPKNS-------SQAKEELKARLRAAEEQLKQMKSRRKED 63
           +L++L + ++G+SFS+ LA LP ++       +    ELK RL  AEEQ++QMKSRR ED
Sbjct: 30  ELKKLAKSFLGLSFSVMLAHLPNDAISIVPRLTSEVTELKRRLATAEEQVRQMKSRRVED 89

Query: 64  SKANARVVEIFASHRNAWQAEEKRLLQQIDAATEEMASLRSKIDELEREKLESDKRVQEL 123
           SKANARVVEIFASHRNAWQ EEKRLL +I    EE     ++I+ELERE       V E 
Sbjct: 90  SKANARVVEIFASHRNAWQEEEKRLLNRIHEMEEEREDFMNRINELERE-------VSER 142

Query: 124 EDMIGFMSRRGCEFEVEQQQQQHYHQHQEEEEEEFGVCESRECYGGANDGQIGNFGFSSE 183
           ++MIGFMSRR  E E E  +       +    +   V  S   YG            SS 
Sbjct: 143 DEMIGFMSRREIEEEDEDGEGDGDESSERYGVDHLTVSSSPNAYG---------INPSSN 193

Query: 184 FLASASKFWTERASSIWQDVQYESQYESLESIYHMKHFVAR 224
           F             + +QD+    QYESLES+Y MKHFV R
Sbjct: 194 F-------------TPFQDL----QYESLESVYRMKHFVPR 217

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225427490|ref|XP_002263265.1| PREDICTED: uncharacterized protein LOC100261374 [Vitis vinifera]

 Score =  140 bits (352), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 86/201 (42%), Positives = 112/201 (55%), Gaps = 46/201 (22%)

Query: 45  RLRAAEEQLKQMKSRRKEDSKANARVVEIFASHRNAWQAEEKRLLQQIDAATEEMASLRS 104
           +L  AE++L ++KSRRKEDSKANARVVEIFA HR  W+ EEKR++ QI AA EE+A LR+
Sbjct: 57  KLLQAEQELCRLKSRRKEDSKANARVVEIFAGHREGWRREEKRMVDQIHAAAEEIACLRA 116

Query: 105 KIDELEREKLESDKRVQEL-------EDMIGFMSRRGCEFEVEQQQQQHYHQHQEEEEEE 157
           ++ ELER + E   RV+EL       E+M+GF++R                    E EE 
Sbjct: 117 RVAELERSEAELKARVEELTREVGEREEMLGFVAR--------------------EREEM 156

Query: 158 FGVCESRECYGGANDGQ--------------IGNFGFSSEFLASASKFWTERASSIWQDV 203
            G       Y   +DG+              +G      EF+ASASK W+     +WQDV
Sbjct: 157 LGFVARESQYACLDDGKVRLPAAEAAEEEEEVGTVYGQPEFVASASKLWSA-GDGLWQDV 215

Query: 204 QYESQYESLESIYHMKHFVAR 224
               QYE +E +YHMKHFVAR
Sbjct: 216 ----QYEPVEPLYHMKHFVAR 232

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|7339491|emb|CAB82814.1| putative protein [Arabidopsis thaliana]

 Score =  135 bits (339), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 99/230 (43%), Positives = 128/230 (55%), Gaps = 46/230 (20%)

Query: 3   AEEEEEAKQLQQLLRLYIGMSFSLFLASLPKN--------SSQAKEELKARLRAAEEQLK 54
            EEE+E  +L++L + ++ +SFS+ LA LP +        +SQ  E LK RL  AEEQ++
Sbjct: 17  VEEEKEHDELKKLAKSFLVLSFSVMLAHLPNDAISLVPRLTSQVTE-LKRRLATAEEQVR 75

Query: 55  QMKSRRKEDSKANARVVEIFASHRNAWQAEEKRLLQQIDAATEEMASLRSKIDELEREKL 114
           QMKSRR EDSKANARVVEIFASHRNAWQ EEKRLL +I    EE     ++I ELERE  
Sbjct: 76  QMKSRRVEDSKANARVVEIFASHRNAWQEEEKRLLNRIHEIEEEREDFMNRISELERE-- 133

Query: 115 ESDKRVQELEDMIGFMSRRGCEFEVEQQQQQHYHQHQEEEEEEFGVCESRECYGGANDGQ 174
                V E ++MIGFMSRR      E +++       +E  E + V +        +   
Sbjct: 134 -----VSERDEMIGFMSRR------EIEEEDDDDGQGDESSERYAV-DHLTLSSSPSPNA 181

Query: 175 IGNFGFSSEFLASASKFWTERASSIWQDVQYESQYESLESIYHMKHFVAR 224
            GNF                   + +QD+    QYESLES+Y MKHFV R
Sbjct: 182 YGNF-------------------NPFQDL----QYESLESVYRMKHFVPR 208

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42565618|ref|NP_190176.2| Ribonuclease P protein subunit P38-related protein [Arabidopsis thaliana] gi|48310010|gb|AAT41736.1| At3g45900 [Arabidopsis thaliana] gi|332644567|gb|AEE78088.1| Ribonuclease P protein subunit P38-related protein [Arabidopsis thaliana]

 Score =  134 bits (338), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 99/230 (43%), Positives = 128/230 (55%), Gaps = 46/230 (20%)

Query: 3   AEEEEEAKQLQQLLRLYIGMSFSLFLASLPKN--------SSQAKEELKARLRAAEEQLK 54
            EEE+E  +L++L + ++ +SFS+ LA LP +        +SQ  E LK RL  AEEQ++
Sbjct: 17  VEEEKEHDELKKLAKSFLVLSFSVMLAHLPNDAISLVPRLTSQVTE-LKRRLATAEEQVR 75

Query: 55  QMKSRRKEDSKANARVVEIFASHRNAWQAEEKRLLQQIDAATEEMASLRSKIDELEREKL 114
           QMKSRR EDSKANARVVEIFASHRNAWQ EEKRLL +I    EE     ++I ELERE  
Sbjct: 76  QMKSRRVEDSKANARVVEIFASHRNAWQEEEKRLLNRIHEIEEEREDFMNRISELERE-- 133

Query: 115 ESDKRVQELEDMIGFMSRRGCEFEVEQQQQQHYHQHQEEEEEEFGVCESRECYGGANDGQ 174
                V E ++MIGFMSRR      E +++       +E  E + V +        +   
Sbjct: 134 -----VSERDEMIGFMSRR------EIEEEDDDDGQGDESSERYAV-DHLTLSSSPSPNA 181

Query: 175 IGNFGFSSEFLASASKFWTERASSIWQDVQYESQYESLESIYHMKHFVAR 224
            GNF                   + +QD+    QYESLES+Y MKHFV R
Sbjct: 182 YGNF-------------------NPFQDL----QYESLESVYRMKHFVPR 208

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147835125|emb|CAN70037.1| hypothetical protein VITISV_015804 [Vitis vinifera]

 Score = 83.2 bits (204), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 46/86 (53%), Positives = 62/86 (72%)

Query: 42  LKARLRAAEEQLKQMKSRRKEDSKANARVVEIFASHRNAWQAEEKRLLQQIDAATEEMAS 101
           L  +L  A+++L ++KSRRKEDSKANARVVE F  HR AW+ EEKR++ QI AATEE+  
Sbjct: 54  LHLKLLQAKQELCRLKSRRKEDSKANARVVESFTGHREAWRREEKRMVDQIHAATEEITC 113

Query: 102 LRSKIDELEREKLESDKRVQELEDMI 127
           LR+K+ EL+    E  + V E E+M+
Sbjct: 114 LRAKVAELKARVEELTREVGEREEML 139

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147774668|emb|CAN67704.1| hypothetical protein VITISV_022430 [Vitis vinifera]

 Score = 77.0 bits (188), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 41/71 (57%), Positives = 53/71 (74%)

Query: 58  SRRKEDSKANARVVEIFASHRNAWQAEEKRLLQQIDAATEEMASLRSKIDELEREKLESD 117
           S R EDSKANARVVEIFASH  AW+ EEKR++ QI +A +E+A LR+K+ ELER K++  
Sbjct: 9   SCRNEDSKANARVVEIFASHHEAWRREEKRMVDQIHSAAKEIAYLRAKLVELERSKVKLK 68

Query: 118 KRVQELEDMIG 128
             V+EL   +G
Sbjct: 69  AMVEELTKEVG 79

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356531517|ref|XP_003534324.1| PREDICTED: uncharacterized protein LOC100817102 [Glycine max]

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 34/48 (70%), Positives = 39/48 (81%), Gaps = 5/48 (10%)

Query: 177 NFGFSSEFLASASKFWTERASSIWQDVQYESQYESLESIYHMKHFVAR 224
           N GF SEF+ASASKFW E+A S+WQDV    QYESLES+Y+ KHFVAR
Sbjct: 28  NNGFDSEFMASASKFWAEKA-SLWQDV----QYESLESMYNTKHFVAR 70

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	224
TAIR|locus:2077207	389	AT3G45900 "AT3G45900" [Arabido	0.504	0.290	0.488	7.7e-28

TAIR|locus:2077207 AT3G45900 "AT3G45900" [Arabidopsis thaliana (taxid:3702)]

 Score = 253 (94.1 bits), Expect = 7.7e-28, Sum P(2) = 7.7e-28
 Identities = 62/127 (48%), Positives = 76/127 (59%)

Query:    19 YIGMSFSLFLASLPKNS-------SQXXXXXXXXXXXXXXQLKQMKSRRKEDSKANARVV 71
             ++ +SFS+ LA LP ++       +               Q++QMKSRR EDSKANARVV
Sbjct:    33 FLVLSFSVMLAHLPNDAISLVPRLTSQVTELKRRLATAEEQVRQMKSRRVEDSKANARVV 92

Query:    72 EIFASHRNAWQAEEKRLLQQIDAATEEMASLRSKIDELEREKLESDKRVQELEDMIGFMS 131
             EIFASHRNAWQ EEKRLL +I    EE     ++I ELERE       V E ++MIGFMS
Sbjct:    93 EIFASHRNAWQEEEKRLLNRIHEIEEEREDFMNRISELERE-------VSERDEMIGFMS 145

Query:   132 RRGCEFE 138
             RR  E E
Sbjct:   146 RREIEEE 152

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0015996 "chlorophyll catabolic process" evidence=RCA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	224
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.003
TIGR03752	472	TIGR03752, conj_TIGR03752, integrating conjugative	0.003
PRK00252	865	PRK00252, alaS, alanyl-tRNA synthetase; Reviewed	0.003
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.004

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 38.2 bits (89), Expect = 0.003
 Identities = 35/121 (28%), Positives = 64/121 (52%), Gaps = 7/121 (5%)

Query: 40  EELKARLRAAEEQLKQMKSRRKEDSKANARVVEIFASHRNAWQAEEKRLLQQIDAATEEM 99
           EELK  L A EE+L+Q++SR +E  +    + E         Q   + L +++++  E +
Sbjct: 719 EELKRELAALEEELEQLQSRLEELEEELEELEE----ELEELQERLEELEEELESLEEAL 774

Query: 100 ASLRSKIDELEREKLESDKRVQELEDMIGFMSRRGCEFEVE---QQQQQHYHQHQEEEEE 156
           A L+ +I+ELE ++    + ++ELE+ +    RR    E E    +Q++   + + EE E
Sbjct: 775 AKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELE 834

Query: 157 E 157
           E
Sbjct: 835 E 835

Length = 1163

>gnl|CDD|234342 TIGR03752, conj_TIGR03752, integrating conjugative element protein, PFL_4705 family

 Score = 37.7 bits (88), Expect = 0.003
 Identities = 21/85 (24%), Positives = 41/85 (48%), Gaps = 9/85 (10%)

Query: 28  LASLPKNSSQAKEELKARLRAAEEQLKQMKSR-RKEDSKANARVVEIFASHRNAWQAEEK 86
           L +L     + ++ L A+L +  E LK    R +K +   + ++       + A Q+E +
Sbjct: 61  LRTLVAEVKELRKRL-AKLISENEALKAENERLQKREQSIDQQI-------QQAVQSETQ 112

Query: 87  RLLQQIDAATEEMASLRSKIDELER 111
            L ++I+    E   L+  ID+L+R
Sbjct: 113 ELTKEIEQLKSERQQLQGLIDQLQR 137

Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition [Mobile and extrachromosomal element functions, Plasmid functions]. Length = 472

>gnl|CDD|234701 PRK00252, alaS, alanyl-tRNA synthetase; Reviewed

 Score = 37.8 bits (89), Expect = 0.003
 Identities = 30/119 (25%), Positives = 53/119 (44%), Gaps = 30/119 (25%)

Query: 3   AEEEEEAKQLQQLLRLYIGMSFSLFLASLPKNSSQAKEELKARLRAAEEQLKQMKSRRKE 62
            E+E   K+L  LL+            + P    +  E L   L+  E++L+Q+K++   
Sbjct: 697 NEQEALLKELAALLK------------AKPSELPERVEALLEELKELEKELEQLKAK--- 741

Query: 63  DSKANARVVEIFASHRNAWQAEE----KRLLQQIDAATEEMASLRSKIDELEREKLESD 117
              A A   ++ A      QA+E    K L  Q++    +  +LR+  D+L ++KL S 
Sbjct: 742 --LAAAAAGDLLA------QAKEVNGVKVLAAQVEGV--DAKALRTLADDL-KDKLGSG 789

Length = 865

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 37.8 bits (88), Expect = 0.004
 Identities = 24/91 (26%), Positives = 46/91 (50%), Gaps = 3/91 (3%)

Query: 37  QAKEELKARLRAAEEQLKQMKSRRKEDSKA---NARVVEIFASHRNAWQAEEKRLLQQID 93
           +A  +LK  +   EE+ + ++   +E  +      R ++       + +   +RL Q+I+
Sbjct: 772 EALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIE 831

Query: 94  AATEEMASLRSKIDELEREKLESDKRVQELE 124
              EE+  L  K+DELE E  E +K ++EL+
Sbjct: 832 ELEEEIEELEEKLDELEEELEELEKELEELK 862

Length = 1163

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	224
PF11932	251	DUF3450: Protein of unknown function (DUF3450); In	95.31
PF05529	192	Bap31: B-cell receptor-associated protein 31-like	95.21
PRK11637	428	AmiB activator; Provisional	94.81
PRK11637	428	AmiB activator; Provisional	92.7
PHA02562	562	46 endonuclease subunit; Provisional	92.53
COG4942	420	Membrane-bound metallopeptidase [Cell division and	91.51
PF08232	134	Striatin: Striatin family; InterPro: IPR013258 Thi	90.65
KOG4196	135	consensus bZIP transcription factor MafK [Transcri	90.58
PF11365	96	DUF3166: Protein of unknown function (DUF3166); In	89.77
PF04156	191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	89.5
PF09304	107	Cortex-I_coil: Cortexillin I, coiled coil; InterPr	89.44
COG4942	420	Membrane-bound metallopeptidase [Cell division and	88.62
TIGR01843	423	type_I_hlyD type I secretion membrane fusion prote	88.22
PF07926	132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	87.93
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	87.69
PF09744	158	Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; Inte	87.15
PF12329	74	TMF_DNA_bd: TATA element modulatory factor 1 DNA b	86.42
PF03962	188	Mnd1: Mnd1 family; InterPro: IPR005647 This family	86.06
PF10211	189	Ax_dynein_light: Axonemal dynein light chain; Inte	85.93
PRK10884	206	SH3 domain-containing protein; Provisional	85.53
TIGR01843	423	type_I_hlyD type I secretion membrane fusion prote	85.22
PF02403	108	Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal dom	84.87
PRK01156	895	chromosome segregation protein; Provisional	84.44
COG2433	652	Uncharacterized conserved protein [Function unknow	84.41
PRK09039	343	hypothetical protein; Validated	84.15
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	83.66
PF00769	246	ERM: Ezrin/radixin/moesin family; InterPro: IPR011	81.3
KOG4571	294	consensus Activating transcription factor 4 [Trans	81.24
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	80.81
PF12709	87	Kinetocho_Slk19: Central kinetochore-associated; I	80.7

>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=95.31  E-value=0.81  Score=39.21  Aligned_cols=42  Identities=21%  Similarity=0.467  Sum_probs=31.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHH
Q 027350           79 NAWQAEEKRLLQQIDAATEEMASLRSKIDELEREKLESDKRV  120 (224)
Q Consensus        79 qsW~~ErKrLr~qI~al~eEi~~LR~kl~E~e~~v~~lErEv  120 (224)
                      +.|..|+..|.++|..+..|+..|+...+.++..+...+++.
T Consensus        45 d~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el   86 (251)
T PF11932_consen   45 DQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQEL   86 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            578899999999999999998888887777775554443333

However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.

>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8

Probab=95.21  E-value=0.24  Score=40.70  Aligned_cols=87  Identities=25%  Similarity=0.441  Sum_probs=51.8

Q ss_pred             HHHHHHHHHHHhhCCCCchhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhhhchhhHHHHHHHHHHHHHHHHH
Q 027350           18 LYIGMSFSLFLASLPKNSSQAKEELKARLRAAEEQLKQMKSRRKEDSKANARVVEIFASHRNAWQAEEKRLLQQIDAATE   97 (224)
Q Consensus        18 sYlGlSFalfla~lp~~~~~S~r~L~~KL~~AE~Ei~eLKkrR~EDAKANeKVv~IFAsheqsW~~ErKrLr~qI~al~e   97 (224)
                      .|| .+|+|||+..-.-    .-.|..++...++.++.+++.=....+++.++          =..+.+++..+|..+.+
T Consensus       104 ~YI-sGf~LfL~l~I~r----~~~li~~l~~~~~~~~~~~kq~~~~~~~~~~~----------~~~~~~~~~~ei~~lk~  168 (192)
T PF05529_consen  104 MYI-SGFALFLSLVIRR----VHSLIKELIKLEEKLEALKKQAESASEAAEKL----------LKEENKKLSEEIEKLKK  168 (192)
T ss_pred             HHH-HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh----------hhhhhhhhHHHHHHHHH
Confidence            366 5677777643211    45677888888888888887666666665555          12344555566666666


Q ss_pred             HHHHHHHhHHHHHHHHHHhHHH
Q 027350           98 EMASLRSKIDELEREKLESDKR  119 (224)
Q Consensus        98 Ei~~LR~kl~E~e~~v~~lErE  119 (224)
                      |+......++.++..++.+++|
T Consensus       169 el~~~~~~~~~LkkQ~~~l~~e  190 (192)
T PF05529_consen  169 ELEKKEKEIEALKKQSEGLQKE  190 (192)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhh
Confidence            6555554455555445554443

Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane

>PRK11637 AmiB activator; Provisional

Probab=94.81  E-value=1.6  Score=40.09  Aligned_cols=23  Identities=17%  Similarity=0.378  Sum_probs=12.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhh
Q 027350           39 KEELKARLRAAEEQLKQMKSRRK   61 (224)
Q Consensus        39 ~r~L~~KL~~AE~Ei~eLKkrR~   61 (224)
                      +..|.+.+...+.+|.++++...
T Consensus        49 l~~l~~qi~~~~~~i~~~~~~~~   71 (428)
T PRK11637         49 LKSIQQDIAAKEKSVRQQQQQRA   71 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            55555555555555555544443

>PRK11637 AmiB activator; Provisional

Probab=92.70  E-value=2.2  Score=39.16  Aligned_cols=23  Identities=4%  Similarity=0.252  Sum_probs=16.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhh
Q 027350           39 KEELKARLRAAEEQLKQMKSRRK   61 (224)
Q Consensus        39 ~r~L~~KL~~AE~Ei~eLKkrR~   61 (224)
                      ...+..+|...+.+|.++++...
T Consensus        42 ~~~~~~~l~~l~~qi~~~~~~i~   64 (428)
T PRK11637         42 ASDNRDQLKSIQQDIAAKEKSVR   64 (428)
T ss_pred             chhhHHHHHHHHHHHHHHHHHHH
Confidence            35677788888888877776554

>PHA02562 46 endonuclease subunit; Provisional

Probab=92.53  E-value=7.5  Score=35.82  Aligned_cols=99  Identities=16%  Similarity=0.279  Sum_probs=62.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHh---hhchhhH---HHHHHHHHHHHHHH-------HHHHHHHHHh
Q 027350           39 KEELKARLRAAEEQLKQMKSRRKEDSKANARVVEIF---ASHRNAW---QAEEKRLLQQIDAA-------TEEMASLRSK  105 (224)
Q Consensus        39 ~r~L~~KL~~AE~Ei~eLKkrR~EDAKANeKVv~IF---AsheqsW---~~ErKrLr~qI~al-------~eEi~~LR~k  105 (224)
                      +..|..++...+..+.++.....+-.+...++.++-   ...+..+   ..++++|..+|..|       .+++..|..+
T Consensus       308 i~~l~~~l~~l~~~i~~~~~~~~~~~~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~  387 (562)
T PHA02562        308 LKELQHSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDE  387 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHH
Confidence            555556666666666655555555444445554442   2222222   23445566666655       4567777777


Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHhhhhcchh
Q 027350          106 IDELEREKLESDKRVQELEDMIGFMSRRGCEF  137 (224)
Q Consensus       106 l~E~e~~v~~lErEv~eReEm~~~lsr~~~~~  137 (224)
                      |.++......++++...|+.+.+.|++.|+..
T Consensus       388 l~~~~~~~~~~~ke~~~~~~i~~~~~~~g~~~  419 (562)
T PHA02562        388 LDKIVKTKSELVKEKYHRGIVTDLLKDSGIKA  419 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence            77777778889999999988888888877654

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=91.51  E-value=8.7  Score=37.27  Aligned_cols=79  Identities=15%  Similarity=0.263  Sum_probs=41.8

Q ss_pred             HHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHH
Q 027350           44 ARLRAAEEQLKQMKSRRKEDSKANARVVEIFASHRNAWQAEEKRLLQQIDAATEEMASLRSKIDELEREKLESDKRVQEL  123 (224)
Q Consensus        44 ~KL~~AE~Ei~eLKkrR~EDAKANeKVv~IFAsheqsW~~ErKrLr~qI~al~eEi~~LR~kl~E~e~~v~~lErEv~eR  123 (224)
                      ++|.....+|.++.+...++.+.=.++-.=.++++    .+=.++.++|-...+++..++++++++..++..|+.+..+|
T Consensus        38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e----~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~r~q  113 (420)
T COG4942          38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLE----TEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQEREQ  113 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence            56666666666666665555554444333222222    22334444444445555666666666666666666555444


Q ss_pred             HHH
Q 027350          124 EDM  126 (224)
Q Consensus       124 eEm  126 (224)
                      ...
T Consensus       114 r~~  116 (420)
T COG4942         114 RRR  116 (420)
T ss_pred             HHH
Confidence            433

>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin

Probab=90.65  E-value=1.3  Score=35.89  Aligned_cols=47  Identities=17%  Similarity=0.259  Sum_probs=41.2

Q ss_pred             hchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHH
Q 027350           76 SHRNAWQAEEKRLLQQIDAATEEMASLRSKIDELEREKLESDKRVQE  122 (224)
Q Consensus        76 sheqsW~~ErKrLr~qI~al~eEi~~LR~kl~E~e~~v~~lErEv~e  122 (224)
                      .-+..|-.||-.|..+|..|.-|.+.+..--.++..+|+-||.....
T Consensus        18 rdR~~WeiERaEmkarIa~LEGE~r~~e~l~~dL~rrIkMLE~aLkq   64 (134)
T PF08232_consen   18 RDRNQWEIERAEMKARIAFLEGERRGQENLKKDLKRRIKMLEYALKQ   64 (134)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34689999999999999999999999999999999999888876543

Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].

>KOG4196 consensus bZIP transcription factor MafK [Transcription]

Probab=90.58  E-value=3.1  Score=35.15  Aligned_cols=79  Identities=25%  Similarity=0.372  Sum_probs=55.1

Q ss_pred             chhhHHHHHHHHH-HHHHHHHHHHhhhhh----hhhhhhHHHHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 027350           35 SSQAKEELKARLR-AAEEQLKQMKSRRKE----DSKANARVVEIFASHRNAWQAEEKRLLQQIDAATEEMASLRSKIDEL  109 (224)
Q Consensus        35 ~~~S~r~L~~KL~-~AE~Ei~eLKkrR~E----DAKANeKVv~IFAsheqsW~~ErKrLr~qI~al~eEi~~LR~kl~E~  109 (224)
                      +..|+|+|-++|. .-.+||.+||.+|+-    -.-+|-|+-.|---  .---.++..|.+||+.|..|++.++..+.-.
T Consensus        30 vsmSVReLNr~LrG~~reEVvrlKQrRRTLKNRGYA~sCR~KRv~Qk--~eLE~~k~~L~qqv~~L~~e~s~~~~E~da~  107 (135)
T KOG4196|consen   30 VSMSVRELNRHLRGLSREEVVRLKQRRRTLKNRGYAQSCRVKRVQQK--HELEKEKAELQQQVEKLKEENSRLRRELDAY  107 (135)
T ss_pred             HHhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3377999998886 346789999998863    34567777776433  3345667778888888888877777766666


Q ss_pred             HHHHHH
Q 027350          110 EREKLE  115 (224)
Q Consensus       110 e~~v~~  115 (224)
                      +.+-++
T Consensus       108 k~k~e~  113 (135)
T KOG4196|consen  108 KSKYEA  113 (135)
T ss_pred             HHHHHH
Confidence            655433

>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function

Probab=89.77  E-value=0.98  Score=35.82  Aligned_cols=36  Identities=31%  Similarity=0.421  Sum_probs=31.6

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHH
Q 027350           87 RLLQQIDAATEEMASLRSKIDELEREKLESDKRVQE  122 (224)
Q Consensus        87 rLr~qI~al~eEi~~LR~kl~E~e~~v~~lErEv~e  122 (224)
                      -||+|.+.+++|+..||++|.+++..-+.++.|..+
T Consensus         5 eLR~qLqFvEEEa~LlRRkl~ele~eN~~l~~EL~k   40 (96)
T PF11365_consen    5 ELRRQLQFVEEEAELLRRKLSELEDENKQLTEELNK   40 (96)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            589999999999999999999999888888776543

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion

Probab=89.50  E-value=9.9  Score=30.74  Aligned_cols=67  Identities=25%  Similarity=0.366  Sum_probs=33.1

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 027350           40 EELKARLRAAEEQLKQMKSRRKEDSKANARVVEIFASHRNAWQAEEKRLLQQIDAATEEMASLRSKIDELE  110 (224)
Q Consensus        40 r~L~~KL~~AE~Ei~eLKkrR~EDAKANeKVv~IFAsheqsW~~ErKrLr~qI~al~eEi~~LR~kl~E~e  110 (224)
                      .++-+++.....++.++..+=.+-..--...-..+....    ...+....+++.+...+..++..+.++.
T Consensus        84 ~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~----~~~~~~~~~l~~l~~~~~~~~~e~~~l~  150 (191)
T PF04156_consen   84 SELQQQLQQLQEELDQLQERIQELESELEKLKEDLQELR----ELLKSVEERLDSLDESIKELEKEIRELQ  150 (191)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344566666667776666554444444444444444433    3334444444444444444444444444

The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].

>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold)

Probab=89.44  E-value=10  Score=30.89  Aligned_cols=77  Identities=19%  Similarity=0.267  Sum_probs=52.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH----H
Q 027350           39 KEELKARLRAAEEQLKQMKSRRKEDSKANARVVEIFASHRNAWQAEEKRLLQQIDAATEEMASLRSKIDELEREK----L  114 (224)
Q Consensus        39 ~r~L~~KL~~AE~Ei~eLKkrR~EDAKANeKVv~IFAsheqsW~~ErKrLr~qI~al~eEi~~LR~kl~E~e~~v----~  114 (224)
                      ..+|..+|...+..|...|-.+.+                  |..+|+.|+.....|..+-.++..+++|+++.|    .
T Consensus        11 ~~el~n~La~Le~slE~~K~S~~e------------------L~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~   72 (107)
T PF09304_consen   11 QNELQNRLASLERSLEDEKTSQGE------------------LAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARR   72 (107)
T ss_dssp             ---HHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHH------------------HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            678899999999999888877665                  456677777777777777777777777777665    3


Q ss_pred             HhHHHHHHHHHHHHHhhhh
Q 027350          115 ESDKRVQELEDMIGFMSRR  133 (224)
Q Consensus       115 ~lErEv~eReEm~~~lsr~  133 (224)
                      .+|.+..-+.+|...+++.
T Consensus        73 ~le~eK~ak~~l~~r~~k~   91 (107)
T PF09304_consen   73 NLEDEKQAKLELESRLLKA   91 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            4445555566666666554

The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=88.62  E-value=7.8  Score=37.60  Aligned_cols=69  Identities=23%  Similarity=0.329  Sum_probs=62.0

Q ss_pred             HHHHhhhhhhhhhhhHHHHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHh
Q 027350           54 KQMKSRRKEDSKANARVVEIFASHRNAWQAEEKRLLQQIDAATEEMASLRSKIDELEREKLESDKRVQELEDMIGFM  130 (224)
Q Consensus        54 ~eLKkrR~EDAKANeKVv~IFAsheqsW~~ErKrLr~qI~al~eEi~~LR~kl~E~e~~v~~lErEv~eReEm~~~l  130 (224)
                      ++|+..+.+.++-|.++..+        ..++.+|..+|..++.+|..|+.+|-+.......+++....-+.-+.+|
T Consensus        38 ~~l~q~q~ei~~~~~~i~~~--------~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l  106 (420)
T COG4942          38 KQLKQIQKEIAALEKKIREQ--------QDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNAL  106 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHH
Confidence            89999999999999998876        4678999999999999999999999999999888888888777777777

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family

Probab=88.22  E-value=17  Score=31.74  Aligned_cols=50  Identities=20%  Similarity=0.340  Sum_probs=25.3

Q ss_pred             hhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHH
Q 027350           74 FASHRNAWQAEEKRLLQQIDAATEEMASLRSKIDELEREKLESDKRVQEL  123 (224)
Q Consensus        74 FAsheqsW~~ErKrLr~qI~al~eEi~~LR~kl~E~e~~v~~lErEv~eR  123 (224)
                      +..+.+....+...|..+|..+..++..++.+++.++..+...++.....
T Consensus       135 ~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~~~l~~~~~~l~~~~~~~~~~  184 (423)
T TIGR01843       135 FESRKSTLRAQLELILAQIKQLEAELAGLQAQLQALRQQLEVISEELEAR  184 (423)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334444455555555555555555555555555554444444444433

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)

Probab=87.93  E-value=12  Score=29.65  Aligned_cols=61  Identities=11%  Similarity=0.292  Sum_probs=36.8

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 027350           43 KARLRAAEEQLKQMKSRRKEDSKANARVVEIFASHRNAWQAEEKRLLQQIDAATEEMASLR  103 (224)
Q Consensus        43 ~~KL~~AE~Ei~eLKkrR~EDAKANeKVv~IFAsheqsW~~ErKrLr~qI~al~eEi~~LR  103 (224)
                      +..|..+..++.+++....+=-..-..+..-....+.+|..+++.|..+|..+..=+..|.
T Consensus        58 ~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL~  118 (132)
T PF07926_consen   58 IKELQQLREELQELQQEINELKAEAESAKAELEESEASWEEQKEQLEKELSELEQRIEDLN  118 (132)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3555555555555554444333333445556688899999999888776666555444443

These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=87.69  E-value=4.1  Score=41.15  Aligned_cols=71  Identities=21%  Similarity=0.288  Sum_probs=38.9

Q ss_pred             HHHHHHHHHHHhhhhhhhhhhhHHHHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHH
Q 027350           47 RAAEEQLKQMKSRRKEDSKANARVVEIFASHRNAWQAEEKRLLQQIDAATEEMASLRSKIDELEREKLESDKRV  120 (224)
Q Consensus        47 ~~AE~Ei~eLKkrR~EDAKANeKVv~IFAsheqsW~~ErKrLr~qI~al~eEi~~LR~kl~E~e~~v~~lErEv  120 (224)
                      ..+|.||.+.|+.|.+-.-+-+|.+.--++.++   .-=--+++++..|+.|+..||..|-..+.++..+|.++
T Consensus       505 ~~lEkQL~eErk~r~~ee~~aar~~~~~~~~r~---e~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~  575 (697)
T PF09726_consen  505 ASLEKQLQEERKARKEEEEKAARALAQAQATRQ---ECAESCRQRRRQLESELKKLRRELKQKEEQIRELESEL  575 (697)
T ss_pred             HHHHHHHHHHHHHHhHHHHhhhhccccchhccc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            467888888887776543222333111112222   11113566666666777777766666666655555554

; GO: 0016021 integral to membrane

>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans

Probab=87.15  E-value=12  Score=31.63  Aligned_cols=41  Identities=24%  Similarity=0.444  Sum_probs=34.2

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHH
Q 027350           78 RNAWQAEEKRLLQQIDAATEEMASLRSKIDELEREKLESDK  118 (224)
Q Consensus        78 eqsW~~ErKrLr~qI~al~eEi~~LR~kl~E~e~~v~~lEr  118 (224)
                      +..|..|+|.|..+|..|..+.+.|..++..+-..+.+++.
T Consensus        84 Ed~~~~e~k~L~~~v~~Le~e~r~L~~~~~~~~~q~~rlee  124 (158)
T PF09744_consen   84 EDQWRQERKDLQSQVEQLEEENRQLELKLKNLSDQSSRLEE  124 (158)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccch
Confidence            79999999999999999999999999777766655555543

Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.

>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures

Probab=86.42  E-value=11  Score=27.84  Aligned_cols=68  Identities=25%  Similarity=0.417  Sum_probs=44.7

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHH
Q 027350           42 LKARLRAAEEQLKQMKSRRKEDSKANARVVEIFASHRNAWQAEEKRLLQQIDAATEEMASLRSKIDELEREKLESDKRV  120 (224)
Q Consensus        42 L~~KL~~AE~Ei~eLKkrR~EDAKANeKVv~IFAsheqsW~~ErKrLr~qI~al~eEi~~LR~kl~E~e~~v~~lErEv  120 (224)
                      |..+|..=..+|.+|..-=.-=++.+-+-           ..-=|+||.++..+...|..|+.++++.+..+..|+...
T Consensus         3 l~~~l~EKDe~Ia~L~eEGekLSk~el~~-----------~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l   70 (74)
T PF12329_consen    3 LEKKLAEKDEQIAQLMEEGEKLSKKELKL-----------NNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEERL   70 (74)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHhh-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            44556666677777764322222222222           222378999999999999999999998888887776654

The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.

>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast)

Probab=86.06  E-value=20  Score=30.43  Aligned_cols=87  Identities=9%  Similarity=0.291  Sum_probs=57.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH----HHHHH
Q 027350           40 EELKARLRAAEEQLKQMKSRRKEDSKANARVVEIFASHRNAWQAEEKRLLQQIDAATEEMASLRSKIDELE----REKLE  115 (224)
Q Consensus        40 r~L~~KL~~AE~Ei~eLKkrR~EDAKANeKVv~IFAsheqsW~~ErKrLr~qI~al~eEi~~LR~kl~E~e----~~v~~  115 (224)
                      ..+-.++..+..++.+++....+   ..+++...=.+.+.+  .||..|..++..|..++..|..+|+.+.    ..++.
T Consensus        65 ~~~~~~~~~l~~~~~~~~~~i~~---l~~~i~~~~~~r~~~--~eR~~~l~~l~~l~~~~~~l~~el~~~~~~Dp~~i~~  139 (188)
T PF03962_consen   65 QKRQNKLEKLQKEIEELEKKIEE---LEEKIEEAKKGREES--EEREELLEELEELKKELKELKKELEKYSENDPEKIEK  139 (188)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhccccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence            33445556666666666554432   333444444455555  8999999999999999999999999766    34677


Q ss_pred             hHHHHHHHHHHHHHhh
Q 027350          116 SDKRVQELEDMIGFMS  131 (224)
Q Consensus       116 lErEv~eReEm~~~ls  131 (224)
                      +.++...=.+.+....
T Consensus       140 ~~~~~~~~~~~anrwT  155 (188)
T PF03962_consen  140 LKEEIKIAKEAANRWT  155 (188)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            7666666655555553

The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].

>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility

Probab=85.93  E-value=20  Score=30.42  Aligned_cols=55  Identities=22%  Similarity=0.290  Sum_probs=45.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHhhhhcchhHH
Q 027350           85 EKRLLQQIDAATEEMASLRSKIDELEREKLESDKRVQELEDMIGFMSRRGCEFEV  139 (224)
Q Consensus        85 rKrLr~qI~al~eEi~~LR~kl~E~e~~v~~lErEv~eReEm~~~lsr~~~~~~~  139 (224)
                      ...|..+|..|..++..|..++.+++...+.+++...++.....+.....+.+..
T Consensus       122 ~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~~k~~~~ei~~lk  176 (189)
T PF10211_consen  122 KQELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQEEEKKHQEEIDFLK  176 (189)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4578889999999999999999999999999988888877777777666665533

Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].

>PRK10884 SH3 domain-containing protein; Provisional

Probab=85.53  E-value=18  Score=31.46  Aligned_cols=64  Identities=19%  Similarity=0.357  Sum_probs=36.8

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhhhchhhHHHHHHHHHHH-------HHHHHHHHHHHHHhHHHHHHHH
Q 027350           41 ELKARLRAAEEQLKQMKSRRKEDSKANARVVEIFASHRNAWQAEEKRLLQQ-------IDAATEEMASLRSKIDELEREK  113 (224)
Q Consensus        41 ~L~~KL~~AE~Ei~eLKkrR~EDAKANeKVv~IFAsheqsW~~ErKrLr~q-------I~al~eEi~~LR~kl~E~e~~v  113 (224)
                      .+..+|...+.|+.+|+..-.+              -.+.|......|.+.       |..|.+|-..|+.+|+.++..+
T Consensus        90 ~~~~rlp~le~el~~l~~~l~~--------------~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~  155 (206)
T PRK10884         90 SLRTRVPDLENQVKTLTDKLNN--------------IDNTWNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKV  155 (206)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHH--------------HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4558888999999988843222              124466555555554       4445555555555555555555


Q ss_pred             HHhHH
Q 027350          114 LESDK  118 (224)
Q Consensus       114 ~~lEr  118 (224)
                      +.++.
T Consensus       156 ~~l~~  160 (206)
T PRK10884        156 DAANL  160 (206)
T ss_pred             HHHHH
Confidence            44443

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family

Probab=85.22  E-value=23  Score=30.91  Aligned_cols=53  Identities=11%  Similarity=0.275  Sum_probs=38.4

Q ss_pred             HHHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHH
Q 027350           70 VVEIFASHRNAWQAEEKRLLQQIDAATEEMASLRSKIDELEREKLESDKRVQE  122 (224)
Q Consensus        70 Vv~IFAsheqsW~~ErKrLr~qI~al~eEi~~LR~kl~E~e~~v~~lErEv~e  122 (224)
                      +..+|.+..+........+..++..+..++..++.+++.++..+..++.+...
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~~~l~~~~~~l~~  176 (423)
T TIGR01843       124 VPELIKGQQSLFESRKSTLRAQLELILAQIKQLEAELAGLQAQLQALRQQLEV  176 (423)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45667777777777777778888888888888888887777766655555433

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.

>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6

Probab=84.87  E-value=9.6  Score=28.51  Aligned_cols=28  Identities=29%  Similarity=0.410  Sum_probs=20.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 027350           39 KEELKARLRAAEEQLKQMKSRRKEDSKA   66 (224)
Q Consensus        39 ~r~L~~KL~~AE~Ei~eLKkrR~EDAKA   66 (224)
                      +-.|-++...+..++.+|+..|+.=+|.
T Consensus        31 i~~ld~~~r~l~~~~e~lr~~rN~~sk~   58 (108)
T PF02403_consen   31 IIELDQERRELQQELEELRAERNELSKE   58 (108)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence            6666777777777778887777765554

1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....

>PRK01156 chromosome segregation protein; Provisional

Probab=84.44  E-value=21  Score=35.58  Aligned_cols=66  Identities=14%  Similarity=0.207  Sum_probs=28.7

Q ss_pred             HHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 027350           44 ARLRAAEEQLKQMKSRRKEDSKANARVVEIFASHRNAWQAEEKRLLQQIDAATEEMASLRSKIDELE  110 (224)
Q Consensus        44 ~KL~~AE~Ei~eLKkrR~EDAKANeKVv~IFAsheqsW~~ErKrLr~qI~al~eEi~~LR~kl~E~e  110 (224)
                      .++.....+|.+++..+.+-...++++..| ...-..+..+...|..+|..+..++..++.+++.++
T Consensus       650 ~~i~~l~~~i~~l~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~l~~~~~~l~~~i~~l~~~~~~l~  715 (895)
T PRK01156        650 GKIDNYKKQIAEIDSIIPDLKEITSRINDI-EDNLKKSRKALDDAKANRARLESTIEILRTRINELS  715 (895)
T ss_pred             HHHHHHHHHHHHHHhhhhhhhhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            334444444555555454444444444444 222223344444444444444444444444433333

>COG2433 Uncharacterized conserved protein [Function unknown]

Probab=84.41  E-value=17  Score=37.29  Aligned_cols=41  Identities=20%  Similarity=0.265  Sum_probs=17.5

Q ss_pred             hhhhhHHHHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 027350           64 SKANARVVEIFASHRNAWQAEEKRLLQQIDAATEEMASLRS  104 (224)
Q Consensus        64 AKANeKVv~IFAsheqsW~~ErKrLr~qI~al~eEi~~LR~  104 (224)
                      -+++++.|+=+-.+-..-+++=..|.+.|..|.+++..+++
T Consensus       424 i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r  464 (652)
T COG2433         424 IKKLEETVERLEEENSELKRELEELKREIEKLESELERFRR  464 (652)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444444444444444444444433333

>PRK09039 hypothetical protein; Validated

Probab=84.15  E-value=34  Score=31.43  Aligned_cols=43  Identities=28%  Similarity=0.371  Sum_probs=31.6

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHh
Q 027350           88 LLQQIDAATEEMASLRSKIDELEREKLESDKRVQELEDMIGFM  130 (224)
Q Consensus        88 Lr~qI~al~eEi~~LR~kl~E~e~~v~~lErEv~eReEm~~~l  130 (224)
                      ...+|..|..+|..||++|+.++..+.++|+.-.+-+.-|..|
T Consensus       135 ~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L  177 (343)
T PRK09039        135 ALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADL  177 (343)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4556778888888888888888888777777665555555555

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=83.66  E-value=9.1  Score=34.74  Aligned_cols=30  Identities=27%  Similarity=0.540  Sum_probs=17.0

Q ss_pred             CCCCCC-CCCchhhhhhhhhhhHHhhhhhhhh
Q 027350          172 DGQIGN-FGFSSEFLASASKFWTERASSIWQD  202 (224)
Q Consensus       172 ~g~~~~-~gf~~~f~~sask~W~e~~~~~wQD  202 (224)
                      ||++|. +||-=--+++..-.|.|=. ..|+-
T Consensus       147 dG~fGTINGlRLGrl~~~~V~W~EIN-AA~Gq  177 (314)
T PF04111_consen  147 DGPFGTINGLRLGRLPNVPVEWNEIN-AAWGQ  177 (314)
T ss_dssp             ETTEEEETTEEE--BTTB---HHHHH-HHHHH
T ss_pred             cCCeeeECCeeeccCCCCCCChHHHH-HHHHH
Confidence            355655 7776444566777999976 77864

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []

Probab=81.30  E-value=36  Score=29.95  Aligned_cols=78  Identities=27%  Similarity=0.423  Sum_probs=52.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHH
Q 027350           39 KEELKARLRAAEEQLKQMKSRRKEDSKANARVVEIFASHRNAWQAEEKRLLQQIDAATEEMASLRSKIDELEREKLESDK  118 (224)
Q Consensus        39 ~r~L~~KL~~AE~Ei~eLKkrR~EDAKANeKVv~IFAsheqsW~~ErKrLr~qI~al~eEi~~LR~kl~E~e~~v~~lEr  118 (224)
                      ...|..++..|+.+-..|.+.|.+=-.+|.++..-....    ..|+..|-++|..+..+|..|......-+..+..+..
T Consensus        35 a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~----~eEk~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~  110 (246)
T PF00769_consen   35 AEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQ----EEEKEQLEQELREAEAEIARLEEESERKEEEAEELQE  110 (246)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            677889999999999999999988888888877655544    5678889999999999888888777766655555554


Q ss_pred             HH
Q 027350          119 RV  120 (224)
Q Consensus       119 Ev  120 (224)
                      ++
T Consensus       111 el  112 (246)
T PF00769_consen  111 EL  112 (246)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.

>KOG4571 consensus Activating transcription factor 4 [Transcription]

Probab=81.24  E-value=9.8  Score=35.58  Aligned_cols=46  Identities=17%  Similarity=0.273  Sum_probs=38.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHH
Q 027350           83 AEEKRLLQQIDAATEEMASLRSKIDELEREKLESDKRVQELEDMIG  128 (224)
Q Consensus        83 ~ErKrLr~qI~al~eEi~~LR~kl~E~e~~v~~lErEv~eReEm~~  128 (224)
                      +=|+|=|.+-.+|+.|+-.|-++-++++.+|.++|||++.-+.+|.
T Consensus       241 RYRqKkRae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~  286 (294)
T KOG4571|consen  241 RYRQKKRAEKEALLGELEGLEKRNEELKDQASELEREIRYLKQLIL  286 (294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456666677889999999999999999999999999998766654

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=80.81  E-value=35  Score=29.27  Aligned_cols=51  Identities=25%  Similarity=0.373  Sum_probs=42.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHh
Q 027350           80 AWQAEEKRLLQQIDAATEEMASLRSKIDELEREKLESDKRVQELEDMIGFM  130 (224)
Q Consensus        80 sW~~ErKrLr~qI~al~eEi~~LR~kl~E~e~~v~~lErEv~eReEm~~~l  130 (224)
                      ++-.-..+.-...+.+.+-|..|..+|.+.+.|++..|+.|...+..|+.|
T Consensus       159 ~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~l  209 (237)
T PF00261_consen  159 SLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRL  209 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444566777788899999999999999999999999999888888877

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore

Probab=80.70  E-value=12  Score=29.50  Aligned_cols=64  Identities=19%  Similarity=0.308  Sum_probs=48.3

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 027350           42 LKARLRAAEEQLKQMKSRRKEDSKANARVVEIFASHRNAWQAEEKRLLQQIDAATEEMASLRSKIDELE  110 (224)
Q Consensus        42 L~~KL~~AE~Ei~eLKkrR~EDAKANeKVv~IFAsheqsW~~ErKrLr~qI~al~eEi~~LR~kl~E~e  110 (224)
                      ...++...-.++--+=+.-+|     .||.-+=.|.+..|...-++|..++..+.+|+..|+.+|+-..
T Consensus        13 v~~~ve~vA~eLh~~YssKHE-----~KV~~LKksYe~rwek~v~~L~~e~~~l~~E~e~L~~~l~~e~   76 (87)
T PF12709_consen   13 VEKAVEKVARELHALYSSKHE-----TKVKALKKSYEARWEKKVDELENENKALKRENEQLKKKLDTER   76 (87)
T ss_pred             HHHHHHHHHHHHHHHHhhHHH-----HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444444     7899999999999999999999999999999999998876443

Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	224
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-06
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	2e-05
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	7e-05
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	5e-04
2ycu_A	995	Non muscle myosin 2C, alpha-actinin; motor protein	4e-05
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	6e-05
1g8x_A	1010	Myosin II heavy chain fused to alpha-actinin 3; mo	6e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.6 bits (107), Expect = 6e-06
 Identities = 34/280 (12%), Positives = 75/280 (26%), Gaps = 84/280 (30%)

Query: 5   EEEEAKQLQQLLRLYIGMSF---------------SLFLASLPKNSSQAK-------EEL 42
             +E K L   L  Y+                   S+   S+    +          ++L
Sbjct: 299 TPDEVKSL---LLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKL 355

Query: 43  KARLRAAEEQLKQMKSRR--------KEDSKANARVVEIFASHRNAWQAEEKRLLQQIDA 94
              + ++   L+  + R+           +     ++ +       W    K  +  +  
Sbjct: 356 TTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLI------WFDVIKSDVMVV-- 407

Query: 95  ATEEMA--SL--------RSKIDELEREKLESDKRVQELEDMI--GFMSRRGCEFEVEQQ 142
              ++   SL           I  +  E     +    L   I   +   +  + +    
Sbjct: 408 -VNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIP 466

Query: 143 QQ------QH--YHQHQEEEEEEFGVCESRECYGGANDGQIGNFGFSSEFLASASKFWTE 194
                    H  +H    E  E       R  +         +F F  + +   S  W  
Sbjct: 467 PYLDQYFYSHIGHHLKNIEHPERMT--LFRMVF--------LDFRFLEQKIRHDSTAWNA 516

Query: 195 RAS--SIWQDVQ-YES-------QYESLESIYHMKHFVAR 224
             S  +  Q ++ Y+        +YE L  +  +  F+ +
Sbjct: 517 SGSILNTLQQLKFYKPYICDNDPKYERL--VNAILDFLPK 554

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 43.7 bits (103), Expect = 2e-05
 Identities = 33/162 (20%), Positives = 73/162 (45%), Gaps = 25/162 (15%)

Query: 1    MAAEEEEEAKQLQQLLRLYIGMSFSLFLASLPKNSSQAKEELKARLRAAEEQLKQMKSRR 60
               +  EE   LQ+ L+    +            + + +  L A+ +  EE L +M++R 
Sbjct: 886  KHTQLCEEKNLLQEKLQAETELY---------AEAEEMRVRLAAKKQELEEILHEMEARI 936

Query: 61   KEDSKANARVVEIFASHRNAWQAEEKRLLQQIDAATEEMASLRSKIDELEREKLESDKRV 120
            +E+ + + ++           QAE+K++ QQ+    E++    +   +L+ EK+ +D ++
Sbjct: 937  EEEEERSQQL-----------QAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKI 985

Query: 121  QELEDMIGFMSRRGCEFEVEQQQQQHYHQ-----HQEEEEEE 157
            +++ED I  M  +  +   E++  +           EEEE+ 
Sbjct: 986  KKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKA 1027

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 42.5 bits (100), Expect = 7e-05
 Identities = 25/158 (15%), Positives = 63/158 (39%), Gaps = 19/158 (12%)

Query: 1    MAAEEEEEAKQLQQLLRLYIGMSFSLF-LASLPKNSSQAKEELKARLRAAEEQLKQMKSR 59
            +    ++E K  Q+L ++   +      L            ELKA+L   EE+L+   +R
Sbjct: 1044 LEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALAR 1103

Query: 60   RKEDSKANARVVEIFASHRNAWQAEEKRLLQQIDAATEEMASLRSKIDELEREKLESDKR 119
             ++++           S +N    + + L   I    E++ S ++  ++ E++K +  + 
Sbjct: 1104 LEDET-----------SQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEE 1152

Query: 120  VQELEDMIGFMSRRGCEFEVEQQQQQHYHQHQEEEEEE 157
            ++ L+  +        +       QQ       +++++
Sbjct: 1153 LEALKTELE-------DTLDTTATQQELRGSDYKDDDD 1183

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 39.8 bits (93), Expect = 5e-04
 Identities = 20/155 (12%), Positives = 60/155 (38%), Gaps = 12/155 (7%)

Query: 6    EEEAKQLQQLLRLYIGMSFSLFLASLPKNSSQAKEELKARLRAAEEQLKQMKSRRKEDSK 65
            +++   L++ L             +  +     K     +++  E+ +  M+ +  + +K
Sbjct: 954  QQQMLDLEEQLEE---------EEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTK 1004

Query: 66   ANARVVEIFASHRNAWQAEEKR---LLQQIDAATEEMASLRSKIDELEREKLESDKRVQE 122
                + E  +        EE++   L +  +     ++ L  ++ + E+ + E +K  ++
Sbjct: 1005 ERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRK 1064

Query: 123  LEDMIGFMSRRGCEFEVEQQQQQHYHQHQEEEEEE 157
            LE     +  +  E + +  + +     +EEE + 
Sbjct: 1065 LEGESSDLHEQIAELQAQIAELKAQLAKKEEELQA 1099

>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995

 Score = 43.1 bits (102), Expect = 4e-05
 Identities = 21/131 (16%), Positives = 53/131 (40%), Gaps = 9/131 (6%)

Query: 1   MAAEEEEEAKQLQQLLRLYIGMSFSLFLASLPKNSSQAKEELKARLRAAEEQLKQMKSRR 60
               +++ A  LQ+  R+   +       +  K+      E    + A + +LK +++  
Sbjct: 869 ELKRQKKIAVLLQKYNRILKKLE----NWATTKSVYLGSNETGDSITAVQAKLKNLEAFD 924

Query: 61  KED----SKANARVVEIFASHRNAWQAEEKRLLQQIDAA-TEEMASLRSKIDELEREKLE 115
            E      ++N+ ++ I A            L ++ D    ++   ++S  +  +   L 
Sbjct: 925 GECQSLEGQSNSDLLSILAQLTELNYNGVPELTERKDTFFAQQWTGVKSSAETYKNTLLA 984

Query: 116 SDKRVQELEDM 126
             +R+Q++ED+
Sbjct: 985 ELERLQKIEDL 995

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 42.4 bits (100), Expect = 6e-05
 Identities = 25/155 (16%), Positives = 51/155 (32%), Gaps = 3/155 (1%)

Query: 3    AEEEEEAKQLQQLLRLYIGMSFSLFLASLPKNSSQAKEELKARLRAAEEQLKQMKSRRKE 62
               E +  QLQ+ +        SL       N          +LR+  E+L+  +   K 
Sbjct: 924  IGLENKIMQLQRKIDEQNKEYKSLLEKM--NNLEITYSTETEKLRSDVERLRMSEEEAKN 981

Query: 63   DSKANARVVEIFASHRNAWQAEEKRLLQQIDAATEEMASLRSKIDELEREKLESDKRVQE 122
             +     + E  A  R      +       + A +        + EL+ +        +E
Sbjct: 982  ATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEE 1041

Query: 123  LEDMIGFMSRRGCEFEVEQQQQQHYHQHQEEEEEE 157
            L   I   ++   E  +E++  +   Q + +  +E
Sbjct: 1042 LNRRIHDQAKEITE-TMEKKLVEETKQLELDLNDE 1075

>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010

 Score = 39.6 bits (93), Expect = 6e-04
 Identities = 20/148 (13%), Positives = 51/148 (34%), Gaps = 16/148 (10%)

Query: 1    MAAEEEEEAKQLQQLLRLYIGMSFSLFLASLPKNSSQAKEELKARLRAAEEQLKQMKSRR 60
                +++ A  LQ+  R+   +       S+    S    +    ++A  + L+      
Sbjct: 877  ELKRQKKIAVLLQKYNRILKKLENWATTKSV-YLGSNETGDSITAVQAKLKNLEAFDGEC 935

Query: 61   KED-SKANARVVEIFASHRNAWQAEEKRLLQQIDAA-TEEMASLRSKIDELEREKLESDK 118
            +    ++N+ ++ I A            L ++ D    ++   ++S  +  +   L   +
Sbjct: 936  QSLEGQSNSDLLSILAQLTELNYNGVPELTERKDTFFAQQWTGVKSSAETYKNTLLAELE 995

Query: 119  RVQELEDMIGFMSRRGCEFEVEQQQQQH 146
            R+Q++ED+                   H
Sbjct: 996  RLQKIEDL-------------HHHHHHH 1010

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	224
2v4h_A	110	NF-kappa-B essential modulator; transcription, met	89.49
3mq9_A	471	Bone marrow stromal antigen 2 fused to maltose-BI	88.81
2w6b_A	56	RHO guanine nucleotide exchange factor 7; X-RAY cr	87.58
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	85.89
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	83.03
2l5g_B	42	Putative uncharacterized protein NCOR2, G protein	81.34
3ol1_A	119	Vimentin; structural genomics, PSI-2, protein stru	80.69
2efr_A	155	General control protein GCN4 and tropomyosin 1 Al;	80.5

>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}

Probab=89.49  E-value=1.7  Score=34.44  Aligned_cols=69  Identities=20%  Similarity=0.383  Sum_probs=44.4

Q ss_pred             HHHHHHHHHHHHHHHHH----HHhhhhhhhhhhh---HH------HHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027350           39 KEELKARLRAAEEQLKQ----MKSRRKEDSKANA---RV------VEIFASHRNAWQAEEKRLLQQIDAATEEMASLRSK  105 (224)
Q Consensus        39 ~r~L~~KL~~AE~Ei~e----LKkrR~EDAKANe---KV------v~IFAsheqsW~~ErKrLr~qI~al~eEi~~LR~k  105 (224)
                      +..|..+|..||+.|..    ....+.++++-++   +|      |.||-+.-.+=+.-|-||..++..|...++.|..+
T Consensus        26 i~~L~~~L~~AEeaL~~Kq~~idelk~ei~q~~~~lE~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~Lq~q  105 (110)
T 2v4h_A           26 LEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQRE  105 (110)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHHHHH
Confidence            88999999999987754    3334456666544   22      45666666666666666666666666666666555


Q ss_pred             HH
Q 027350          106 ID  107 (224)
Q Consensus       106 l~  107 (224)
                      +.
T Consensus       106 ~~  107 (110)
T 2v4h_A          106 FN  107 (110)
T ss_dssp             HT
T ss_pred             HH
Confidence            54

>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}

Probab=88.81  E-value=3.5  Score=35.84  Aligned_cols=54  Identities=17%  Similarity=0.236  Sum_probs=41.4

Q ss_pred             hhhhhhhhhhHHHHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 027350           59 RRKEDSKANARVVEIFASHRNAWQAEEKRLLQQIDAATEEMASLRSKIDELEREKLES  116 (224)
Q Consensus        59 rR~EDAKANeKVv~IFAsheqsW~~ErKrLr~qI~al~eEi~~LR~kl~E~e~~v~~l  116 (224)
                      .|..-+-+|--||-.-+|-+.-    .-.-..+|..++.||..|+.+|.++++.|+++
T Consensus       416 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  469 (471)
T 3mq9_A          416 VEAQAATANHTVMALMASLDAE----KAQGQKKVEELEGEITTLNHKLQDASAEVERL  469 (471)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhhcchhHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4566778899999998876532    11222478999999999999999999988775

>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}

Probab=87.58  E-value=1.9  Score=30.82  Aligned_cols=45  Identities=18%  Similarity=0.281  Sum_probs=35.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHh
Q 027350           83 AEEKRLLQQIDAATEEMASLRSKIDELEREKLESDKRVQELEDMIGFM  130 (224)
Q Consensus        83 ~ErKrLr~qI~al~eEi~~LR~kl~E~e~~v~~lErEv~eReEm~~~l  130 (224)
                      .++|.|..-+=+|.+++.+|+.   |.+.....+|+|..-|.+|+.-+
T Consensus         3 veEKSlVDtVYaLkDqV~eL~q---e~k~m~k~lEeEqkARk~LE~~v   47 (56)
T 2w6b_A            3 LGSKSLVDTVYALKDEVQELRQ---DNKKMKKSLEEEQRARKDLEKLV   47 (56)
T ss_dssp             --CHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence            4678999999999999999987   55566688888988888887665

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=85.89  E-value=12  Score=37.76  Aligned_cols=32  Identities=22%  Similarity=0.282  Sum_probs=18.0

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHH
Q 027350           87 RLLQQIDAATEEMASLRSKIDELEREKLESDK  118 (224)
Q Consensus        87 rLr~qI~al~eEi~~LR~kl~E~e~~v~~lEr  118 (224)
                      .|...|..|.+|...||.+++|++..+...++
T Consensus      1020 ~L~~kv~~L~~e~~~L~qq~~~l~~~~~~~~~ 1051 (1080)
T 2dfs_A         1020 ETEQLVSELKEQNTLLKTEKEELNRRIHDQAK 1051 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45555556666666666666666655444433

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=83.03  E-value=19  Score=29.85  Aligned_cols=21  Identities=19%  Similarity=0.343  Sum_probs=9.2

Q ss_pred             HHHHHHHHHHHHHHHHhhhhh
Q 027350           42 LKARLRAAEEQLKQMKSRRKE   62 (224)
Q Consensus        42 L~~KL~~AE~Ei~eLKkrR~E   62 (224)
                      +...+...+.+|.+++.+...
T Consensus        58 ~~~~~~~~e~~i~~~~~ri~~   78 (256)
T 3na7_A           58 LKLQVSKNEQTLQDTNAKIAS   78 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            333444444444444444433

>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}

Probab=81.34  E-value=3.7  Score=27.85  Aligned_cols=35  Identities=17%  Similarity=0.433  Sum_probs=30.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHH
Q 027350           87 RLLQQIDAATEEMASLRSKIDELEREKLESDKRVQ  121 (224)
Q Consensus        87 rLr~qI~al~eEi~~LR~kl~E~e~~v~~lErEv~  121 (224)
                      .|.++|+-+-.||+--+.|+++++.+...||+.+.
T Consensus         6 ~l~qkI~kVdrEI~Kte~kI~~lqkKlkeLee~a~   40 (42)
T 2l5g_B            6 ELIQNMDRVDREITMVEQQISKLKKKQQQLEEEAA   40 (42)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            58899999999999999999999999988887653

>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A

Probab=80.50  E-value=22  Score=28.95  Aligned_cols=43  Identities=28%  Similarity=0.310  Sum_probs=36.9

Q ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 027350           89 LQQIDAATEEMASLRSKIDELEREKLESDKRVQELEDMIGFMS  131 (224)
Q Consensus        89 r~qI~al~eEi~~LR~kl~E~e~~v~~lErEv~eReEm~~~ls  131 (224)
                      .++-+...+.|..|..+|.+.+.|++..||.|...+.-|+.|-
T Consensus        69 sqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lE  111 (155)
T 2efr_A           69 SQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLE  111 (155)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455778899999999999999999999999999888887773

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00