Citrus Sinensis ID: 027466

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220---
MRMMKEEIEEQTREEELLSFPQTQQQSKLVVVGYALTSKKTKSFLQPKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLTGKEWRQILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKLEPPLVLQEFVNHGMQMAFGYLADIHYIIFILL
ccccHHHHHHHHHHHHHcccccccccccEEEEEEEEcHHHHHccccHHHHHHHHHcccEEEEcccccccccccccEEEEEccccHHHHHHHHHHHHHccccEEEccHHHHHHHccHHHHHHHHHHcccccccccEEcccEEEEcccccccHHHHHHccccccEEEEEcccccccccEEEEEEEcccccccccccEEEEEEEEcccEEEEEEEEcccEEEEEEc
ccccccccccccccccccccccHcccccEEEEEEEccHHHHHHHcHHHHHHHHHHcccEEEEccccccHHHccccEEEEEEcccHHHHHHHHHHHHHcccEEEEccHHHHHHHHHHHHHHHHHHHHccccccccEccccEEEEcccHHHHHHHHHHccccccEEEEEEEEcccccccEEEEEEccccHHcccccEEEEEEEccccEEEEEEEEcccEEEEEEc
MRMMKEEIEEQTREEellsfpqtqqqSKLVVVGYALTSKKTKSFLQPKLEGLARNKGILFVAidqnrplsdqgpfdiVLHKLTGKEWRQILEEYRqthpevtvldppyaiqhlHNRQSMLQCVADMnlsnsygkvdvprqlvierdassipdvVLKAgltlplvakplvadgsakshELSLAYDQyslkklepplVLQEFVNHGMQMAFGYLADIHYIIFILL
mrmmkeeiEEQTreeellsfpqtqqqskLVVVGYALTSKKtksflqpkleglaRNKGILFVAIDqnrplsdqGPFDIVLHKLTGKEWRQILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKLEPPLVLQEFVNHGMQMAFGYLADIHYIIFILL
MRMMKeeieeqtreeeLLSFPQTQQQSKLVVVGYALTSKKTKSFLQPKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLTGKEWRQILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKLEPPLVLQEFVNHGMQMAFGYLADIHYIIFILL
***************************KLVVVGYALTSKKTKSFLQPKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLTGKEWRQILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKLEPPLVLQEFVNHGMQMAFGYLADIHYIIFIL*
*******************************VGYALTSKKTKSFLQPKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLTGKEWRQILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKLEPPLVLQEFVNHGMQMAFGYLADIHYIIFILL
*********************QTQQQSKLVVVGYALTSKKTKSFLQPKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLTGKEWRQILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKLEPPLVLQEFVNHGMQMAFGYLADIHYIIFILL
********************PQTQQQSKLVVVGYALTSKKTKSFLQPKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLTGKEWRQILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKLEPPLVLQEFVNHGMQMAFGYLADIHYIIFILL
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MRMMKEEIEEQTREEELLSFPQTQQQSKLVVVGYALTSKKTKSFLQPKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLTGKEWRQILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKLEPPLVLQEFVNHGMQMAFGYLADIHYIIFILL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query223 2.2.26 [Sep-21-2011]
Q9SUG3 353 Inositol-tetrakisphosphat yes no 0.793 0.501 0.830 7e-82
O81893 391 Inositol-tetrakisphosphat no no 0.798 0.455 0.674 1e-66
Q84Y01 342 Inositol-tetrakisphosphat N/A no 0.775 0.505 0.497 3e-44
Q9SBA5 319 Inositol-tetrakisphosphat no no 0.775 0.542 0.451 1e-34
Q7ZU91 396 Inositol-tetrakisphosphat yes no 0.766 0.431 0.318 1e-20
Q5F480 407 Inositol-tetrakisphosphat yes no 0.757 0.415 0.315 6e-20
Q7SY78 396 Inositol-tetrakisphosphat N/A no 0.766 0.431 0.304 9e-19
Q13572 414 Inositol-tetrakisphosphat no no 0.766 0.413 0.308 1e-18
Q8BYN3 419 Inositol-tetrakisphosphat yes no 0.753 0.400 0.313 3e-18
P0C0T1 419 Inositol-tetrakisphosphat yes no 0.753 0.400 0.308 4e-18
>sp|Q9SUG3|ITPK2_ARATH Inositol-tetrakisphosphate 1-kinase 2 OS=Arabidopsis thaliana GN=ITPK2 PE=2 SV=2 Back     alignment and function desciption
 Score =  303 bits (775), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 147/177 (83%), Positives = 161/177 (90%)

Query: 28  KLVVVGYALTSKKTKSFLQPKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLTGKEW 87
           K ++VGYALTSKK KSFLQPKLEGLARNKGILFVAIDQN+PLS+QGPFDIVLHK  GKEW
Sbjct: 39  KSIIVGYALTSKKIKSFLQPKLEGLARNKGILFVAIDQNKPLSEQGPFDIVLHKQIGKEW 98

Query: 88  RQILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDA 147
           R+ILEE+R  HP+VTVLDPP AI HL NRQSMLQCVADMNLS+S G+V VP+QLVI++DA
Sbjct: 99  RRILEEFRLAHPDVTVLDPPDAILHLRNRQSMLQCVADMNLSDSNGRVGVPKQLVIKKDA 158

Query: 148 SSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKLEPPLVLQEFVNHG 204
           SSIP+ V  AGL LPLVAKPLVADGSAKSHELSLAYDQ+SL KLEPPLVLQEFVNHG
Sbjct: 159 SSIPEAVNNAGLRLPLVAKPLVADGSAKSHELSLAYDQHSLLKLEPPLVLQEFVNHG 215
Kinase that can phosphorylate various inositol polyphosphate such as Ins(3,4,5,6)P4 or Ins(1,3,4)P3. Phosphorylates Ins(3,4,5,6)P4 at position 1 to form Ins(1,3,4,5,6)P5. This reaction is thought to have regulatory importance, since Ins(3,4,5,6)P4 is an inhibitor of plasma membrane Ca(2+)-activated Cl(-) channels, while Ins(1,3,4,5,6)P5 is not. Also phosphorylates Ins(1,3,4)P3 on O-5 and O-6 to form Ins(1,3,4,6)P4, an essential molecule in the hexakisphosphate (InsP6) pathway.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: .EC: 1EC: 5EC: 9
>sp|O81893|ITPK3_ARATH Inositol-tetrakisphosphate 1-kinase 3 OS=Arabidopsis thaliana GN=ITPK3 PE=2 SV=3 Back     alignment and function description
>sp|Q84Y01|ITPK1_MAIZE Inositol-tetrakisphosphate 1-kinase 1 OS=Zea mays GN=ITPK1 PE=2 SV=1 Back     alignment and function description
>sp|Q9SBA5|ITPK1_ARATH Inositol-tetrakisphosphate 1-kinase 1 OS=Arabidopsis thaliana GN=ITPK1 PE=2 SV=1 Back     alignment and function description
>sp|Q7ZU91|ITPK1_DANRE Inositol-tetrakisphosphate 1-kinase OS=Danio rerio GN=itpk1 PE=2 SV=2 Back     alignment and function description
>sp|Q5F480|ITPK1_CHICK Inositol-tetrakisphosphate 1-kinase OS=Gallus gallus GN=ITPK1 PE=2 SV=1 Back     alignment and function description
>sp|Q7SY78|ITPK1_XENLA Inositol-tetrakisphosphate 1-kinase OS=Xenopus laevis GN=itpk1 PE=2 SV=1 Back     alignment and function description
>sp|Q13572|ITPK1_HUMAN Inositol-tetrakisphosphate 1-kinase OS=Homo sapiens GN=ITPK1 PE=1 SV=2 Back     alignment and function description
>sp|Q8BYN3|ITPK1_MOUSE Inositol-tetrakisphosphate 1-kinase OS=Mus musculus GN=Itpk1 PE=2 SV=1 Back     alignment and function description
>sp|P0C0T1|ITPK1_BOVIN Inositol-tetrakisphosphate 1-kinase OS=Bos taurus GN=ITPK1 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query223
224081885319 predicted protein [Populus trichocarpa] 0.807 0.564 0.877 1e-87
225458958 347 PREDICTED: inositol-tetrakisphosphate 1- 0.811 0.521 0.878 3e-86
255537904 355 Inositol-tetrakisphosphate 1-kinase, put 0.874 0.549 0.812 4e-86
302142133315 unnamed protein product [Vitis vinifera] 0.793 0.561 0.892 6e-86
297813275 363 predicted protein [Arabidopsis lyrata su 0.860 0.528 0.759 9e-82
356507953 354 PREDICTED: inositol-tetrakisphosphate 1- 0.793 0.5 0.836 3e-81
351721983 354 inositol phosphate kinase [Glycine max] 0.793 0.5 0.841 4e-81
18413088 353 inositol-tetrakisphosphate 1-kinase 2 [A 0.793 0.501 0.830 4e-80
5262190 338 inositol 1, 3, 4-trisphosphate 5/6-kinas 0.793 0.523 0.830 6e-80
255562182 327 Inositol-tetrakisphosphate 1-kinase, put 0.878 0.599 0.709 3e-74
>gi|224081885|ref|XP_002306515.1| predicted protein [Populus trichocarpa] gi|222855964|gb|EEE93511.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  328 bits (841), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 158/180 (87%), Positives = 168/180 (93%)

Query: 28  KLVVVGYALTSKKTKSFLQPKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLTGKEW 87
           K  VVGYALTSKK KSFL+PKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLTGKEW
Sbjct: 1   KFAVVGYALTSKKIKSFLKPKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLTGKEW 60

Query: 88  RQILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDA 147
           RQILE+YR+THPEVTVLDPP AIQHLHNRQSMLQCVADMNLSNSYGKV +P+Q+VI++DA
Sbjct: 61  RQILEDYRRTHPEVTVLDPPDAIQHLHNRQSMLQCVADMNLSNSYGKVGIPKQIVIKKDA 120

Query: 148 SSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKLEPPLVLQEFVNHGMQM 207
           SSIP  V KAGL LP+VAKPLVADGSAKSHELSLAYDQ SL+KLEPPLVLQEFVNHG  M
Sbjct: 121 SSIPGAVAKAGLMLPIVAKPLVADGSAKSHELSLAYDQQSLQKLEPPLVLQEFVNHGGVM 180

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225458958|ref|XP_002285550.1| PREDICTED: inositol-tetrakisphosphate 1-kinase 2 [Vitis vinifera] Back     alignment and taxonomy information
>gi|255537904|ref|XP_002510017.1| Inositol-tetrakisphosphate 1-kinase, putative [Ricinus communis] gi|223550718|gb|EEF52204.1| Inositol-tetrakisphosphate 1-kinase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|302142133|emb|CBI19336.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|297813275|ref|XP_002874521.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297320358|gb|EFH50780.1| predicted protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|356507953|ref|XP_003522727.1| PREDICTED: inositol-tetrakisphosphate 1-kinase 2-like [Glycine max] Back     alignment and taxonomy information
>gi|351721983|ref|NP_001237484.1| inositol phosphate kinase [Glycine max] gi|156752165|gb|ABU93833.1| inositol phosphate kinase [Glycine max] Back     alignment and taxonomy information
>gi|18413088|ref|NP_567334.1| inositol-tetrakisphosphate 1-kinase 2 [Arabidopsis thaliana] gi|83288250|sp|Q9SUG3.2|ITPK2_ARATH RecName: Full=Inositol-tetrakisphosphate 1-kinase 2; AltName: Full=Inositol 1,3,4-trisphosphate 5/6-kinase 2; Short=AtItpk-2; Short=Inositol-triphosphate 5/6-kinase 2; Short=Ins(1,3,4)P(3) 5/6-kinase 2 gi|15215758|gb|AAK91424.1| AT4g08170/T12G13_10 [Arabidopsis thaliana] gi|16323320|gb|AAL15415.1| AT4g08170/T12G13_10 [Arabidopsis thaliana] gi|332657201|gb|AEE82601.1| inositol-tetrakisphosphate 1-kinase 2 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|5262190|emb|CAB45787.1| inositol 1, 3, 4-trisphosphate 5/6-kinase-like protein [Arabidopsis thaliana] gi|7267457|emb|CAB81153.1| inositol 1, 3, 4-trisphosphate 5/6-kinase-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|255562182|ref|XP_002522099.1| Inositol-tetrakisphosphate 1-kinase, putative [Ricinus communis] gi|223538698|gb|EEF40299.1| Inositol-tetrakisphosphate 1-kinase, putative [Ricinus communis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query223
TAIR|locus:2132487 353 AT4G08170 [Arabidopsis thalian 0.793 0.501 0.830 1.5e-74
TAIR|locus:2134253 391 AT4G33770 [Arabidopsis thalian 0.807 0.460 0.685 1.4e-62
TAIR|locus:2148990 319 ITPK1 "inositol (1,3,4) P3 5/6 0.775 0.542 0.451 4.6e-34
ZFIN|ZDB-GENE-040426-1953 396 itpk1 "inositol 1,3,4-triphosp 0.766 0.431 0.318 3.1e-21
UNIPROTKB|Q5F480 407 ITPK1 "Inositol-tetrakisphosph 0.766 0.420 0.308 1.9e-19
UNIPROTKB|Q13572 414 ITPK1 "Inositol-tetrakisphosph 0.766 0.413 0.324 9.6e-19
UNIPROTKB|J9NW00 419 ITPK1 "Uncharacterized protein 0.766 0.408 0.313 2.2e-18
UNIPROTKB|P0C0T1 419 ITPK1 "Inositol-tetrakisphosph 0.766 0.408 0.318 2.8e-18
MGI|MGI:2446159 419 Itpk1 "inositol 1,3,4-triphosp 0.766 0.408 0.318 2.8e-18
RGD|1595691 421 Itpk1 "inositol-tetrakisphosph 0.766 0.406 0.318 2.8e-18
TAIR|locus:2132487 AT4G08170 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 752 (269.8 bits), Expect = 1.5e-74, P = 1.5e-74
 Identities = 147/177 (83%), Positives = 161/177 (90%)

Query:    28 KLVVVGYALTSKKTKSFLQPKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLTGKEW 87
             K ++VGYALTSKK KSFLQPKLEGLARNKGILFVAIDQN+PLS+QGPFDIVLHK  GKEW
Sbjct:    39 KSIIVGYALTSKKIKSFLQPKLEGLARNKGILFVAIDQNKPLSEQGPFDIVLHKQIGKEW 98

Query:    88 RQILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDA 147
             R+ILEE+R  HP+VTVLDPP AI HL NRQSMLQCVADMNLS+S G+V VP+QLVI++DA
Sbjct:    99 RRILEEFRLAHPDVTVLDPPDAILHLRNRQSMLQCVADMNLSDSNGRVGVPKQLVIKKDA 158

Query:   148 SSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKLEPPLVLQEFVNHG 204
             SSIP+ V  AGL LPLVAKPLVADGSAKSHELSLAYDQ+SL KLEPPLVLQEFVNHG
Sbjct:   159 SSIPEAVNNAGLRLPLVAKPLVADGSAKSHELSLAYDQHSLLKLEPPLVLQEFVNHG 215
GO:0000287 "magnesium ion binding" evidence=IEA
GO:0003824 "catalytic activity" evidence=ISS
GO:0005524 "ATP binding" evidence=IEA
GO:0005622 "intracellular" evidence=IEA
GO:0005634 "nucleus" evidence=ISM;IDA
GO:0032957 "inositol trisphosphate metabolic process" evidence=IEA
GO:0046872 "metal ion binding" evidence=IEA
GO:0047325 "inositol tetrakisphosphate 1-kinase activity" evidence=IEA
GO:0052725 "inositol-1,3,4-trisphosphate 6-kinase activity" evidence=IEA
GO:0052726 "inositol-1,3,4-trisphosphate 5-kinase activity" evidence=IEA
GO:0005737 "cytoplasm" evidence=IDA
GO:0009611 "response to wounding" evidence=IEP;RCA
GO:0009620 "response to fungus" evidence=RCA
GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA
GO:0009753 "response to jasmonic acid stimulus" evidence=RCA
TAIR|locus:2134253 AT4G33770 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2148990 ITPK1 "inositol (1,3,4) P3 5/6-kinase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-1953 itpk1 "inositol 1,3,4-triphosphate 5/6 kinase" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q5F480 ITPK1 "Inositol-tetrakisphosphate 1-kinase" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q13572 ITPK1 "Inositol-tetrakisphosphate 1-kinase" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|J9NW00 ITPK1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|P0C0T1 ITPK1 "Inositol-tetrakisphosphate 1-kinase" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
MGI|MGI:2446159 Itpk1 "inositol 1,3,4-triphosphate 5/6 kinase" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1595691 Itpk1 "inositol-tetrakisphosphate 1-kinase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9SUG3ITPK2_ARATH2, ., 7, ., 1, ., 1, 5, 90.83050.79370.5014yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.7.1.1340.914
4th Layer2.7.1.1590.914
3rd Layer2.7.10.921

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.V.4486.1
hypothetical protein (319 aa)
(Populus trichocarpa)
Predicted Functional Partners:
estExt_Genewise1_v1.C_LG_IX2631
hypothetical protein (348 aa)
     •••0.900
gw1.XIX.770.1
hypothetical protein (311 aa)
     • •0.899
gw1.III.1387.1
hypothetical protein (309 aa)
     • •0.899
gw1.29.16.1
hypothetical protein (315 aa)
     • •0.899
estExt_fgenesh4_pg.C_LG_V0044
hypothetical protein (396 aa)
     •  0.899

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query223
PLN02941 328 PLN02941, PLN02941, inositol-tetrakisphosphate 1-k 1e-125
pfam05770 307 pfam05770, Ins134_P3_kin, Inositol 1, 3, 4-trispho 1e-102
>gnl|CDD|215508 PLN02941, PLN02941, inositol-tetrakisphosphate 1-kinase Back     alignment and domain information 
 Score =  356 bits (915), Expect = e-125
 Identities = 135/186 (72%), Positives = 150/186 (80%)

Query: 19  SFPQTQQQSKLVVVGYALTSKKTKSFLQPKLEGLARNKGILFVAIDQNRPLSDQGPFDIV 78
           +   +  Q K  VVGYALT KK KSFLQP LE LAR+KGI  VAID +RPLS+QGPFD++
Sbjct: 11  APLSSSSQQKRFVVGYALTPKKVKSFLQPSLEALARSKGIDLVAIDPSRPLSEQGPFDVI 70

Query: 79  LHKLTGKEWRQILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVP 138
           LHKL GKEWRQ LEEYR+ HP+VTVLDPP AIQ LHNRQSMLQ VAD+ LS+ YG V VP
Sbjct: 71  LHKLYGKEWRQQLEEYREKHPDVTVLDPPDAIQRLHNRQSMLQVVADLKLSDGYGSVGVP 130

Query: 139 RQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKLEPPLVLQ 198
           +QLV+  D SSIPD V  AGL  PLVAKPLVADGSAKSH++SLAYDQ  L KLEPPLVLQ
Sbjct: 131 KQLVVYDDESSIPDAVALAGLKFPLVAKPLVADGSAKSHKMSLAYDQEGLSKLEPPLVLQ 190

Query: 199 EFVNHG 204
           EFVNHG
Sbjct: 191 EFVNHG 196

Length = 328
>gnl|CDD|114493 pfam05770, Ins134_P3_kin, Inositol 1, 3, 4-trisphosphate 5/6-kinase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 223
PF05770 307 Ins134_P3_kin: Inositol 1, 3, 4-trisphosphate 5/6- 100.0
PLN02941 328 inositol-tetrakisphosphate 1-kinase 100.0
TIGR00768277 rimK_fam alpha-L-glutamate ligases, RimK family. T 99.15
TIGR02144280 LysX_arch Lysine biosynthesis enzyme LysX. The fam 99.14
PRK01372 304 ddl D-alanine--D-alanine ligase; Reviewed 98.65
PRK10446300 ribosomal protein S6 modification protein; Provisi 98.64
TIGR01205 315 D_ala_D_alaTIGR D-alanine--D-alanine ligase. but a 98.56
PF08443190 RimK: RimK-like ATP-grasp domain; InterPro: IPR013 98.29
COG0189318 RimK Glutathione synthase/Ribosomal protein S6 mod 98.13
PRK14571 299 D-alanyl-alanine synthetase A; Provisional 98.11
PRK12767 326 carbamoyl phosphate synthase-like protein; Provisi 98.11
PRK06019 372 phosphoribosylaminoimidazole carboxylase ATPase su 98.06
PRK07206 416 hypothetical protein; Provisional 98.05
TIGR01161 352 purK phosphoribosylaminoimidazole carboxylase, Pur 98.02
TIGR01142 380 purT phosphoribosylglycinamide formyltransferase 2 97.99
PRK09288 395 purT phosphoribosylglycinamide formyltransferase 2 97.97
PRK02471 752 bifunctional glutamate--cysteine ligase/glutathion 97.97
PF13535184 ATP-grasp_4: ATP-grasp domain; PDB: 3VMM_A 3LN6_A 97.94
PRK06849 389 hypothetical protein; Provisional 97.84
PRK14569 296 D-alanyl-alanine synthetase A; Provisional 97.84
PRK12458 338 glutathione synthetase; Provisional 97.84
PRK05294 1066 carB carbamoyl phosphate synthase large subunit; R 97.83
PRK01966 333 ddl D-alanyl-alanine synthetase A; Reviewed 97.81
TIGR03103 547 trio_acet_GNAT GNAT-family acetyltransferase TIGR0 97.79
PRK14572 347 D-alanyl-alanine synthetase A; Provisional 97.75
TIGR01369 1050 CPSaseII_lrg carbamoyl-phosphate synthase, large s 97.72
PRK05246316 glutathione synthetase; Provisional 97.69
TIGR01380312 glut_syn glutathione synthetase, prokaryotic. This 97.65
PRK00885 420 phosphoribosylamine--glycine ligase; Provisional 97.63
PRK08462 445 biotin carboxylase; Validated 97.6
PRK05586 447 biotin carboxylase; Validated 97.52
PRK12815 1068 carB carbamoyl phosphate synthase large subunit; R 97.48
PRK02186 887 argininosuccinate lyase; Provisional 97.46
PRK13790 379 phosphoribosylamine--glycine ligase; Provisional 97.44
PRK14016 727 cyanophycin synthetase; Provisional 97.4
PF07478 203 Dala_Dala_lig_C: D-ala D-ala ligase C-terminus; In 97.37
TIGR00877 423 purD phosphoribosylamine--glycine ligase. This enz 97.34
TIGR02068 864 cya_phycin_syn cyanophycin synthetase. Cyanophycin 97.29
PLN02735 1102 carbamoyl-phosphate synthase 97.26
PLN02948 577 phosphoribosylaminoimidazole carboxylase 97.26
PRK05294 1066 carB carbamoyl phosphate synthase large subunit; R 97.2
PRK14570 364 D-alanyl-alanine synthetase A; Provisional 97.1
PRK06524 493 biotin carboxylase-like protein; Validated 97.05
PRK14568 343 vanB D-alanine--D-lactate ligase; Provisional 97.04
PRK06111 450 acetyl-CoA carboxylase biotin carboxylase subunit; 97.03
PLN02735 1102 carbamoyl-phosphate synthase 96.89
TIGR01235 1143 pyruv_carbox pyruvate carboxylase. This enzyme pla 96.87
TIGR01369 1050 CPSaseII_lrg carbamoyl-phosphate synthase, large s 96.87
TIGR00514 449 accC acetyl-CoA carboxylase, biotin carboxylase su 96.72
PRK08591 451 acetyl-CoA carboxylase biotin carboxylase subunit; 96.71
PRK12833 467 acetyl-CoA carboxylase biotin carboxylase subunit; 96.69
PLN02257 434 phosphoribosylamine--glycine ligase 96.68
PRK12815 1068 carB carbamoyl phosphate synthase large subunit; R 96.64
PRK13789 426 phosphoribosylamine--glycine ligase; Provisional 96.52
PRK08654 499 pyruvate carboxylase subunit A; Validated 96.52
PRK08463 478 acetyl-CoA carboxylase subunit A; Validated 96.46
PRK14573 809 bifunctional D-alanyl-alanine synthetase A/UDP-N-a 96.33
TIGR01435 737 glu_cys_lig_rel glutamate--cysteine ligase/gamma-g 96.31
PRK06395 435 phosphoribosylamine--glycine ligase; Provisional 96.15
PRK12999 1146 pyruvate carboxylase; Reviewed 95.96
KOG1057 1018 consensus Arp2/3 complex-interacting protein VIP1/ 95.87
PRK07178 472 pyruvate carboxylase subunit A; Validated 95.57
TIGR02712 1201 urea_carbox urea carboxylase. Members of this fami 95.13
PRK13278 358 purP 5-formaminoimidazole-4-carboxamide-1-(beta)-D 94.98
COG0026 375 PurK Phosphoribosylaminoimidazole carboxylase (NCA 94.26
PRK05784 486 phosphoribosylamine--glycine ligase; Provisional 94.15
PF02655161 ATP-grasp_3: ATP-grasp domain; InterPro: IPR003806 92.85
PF15632 329 ATPgrasp_Ter: ATP-grasp in the biosynthetic pathwa 92.55
COG0439 449 AccC Biotin carboxylase [Lipid metabolism] 92.08
PRK13277 366 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribo 90.69
PF02786 211 CPSase_L_D2: Carbamoyl-phosphate synthase L chain, 89.14
COG0458 400 CarB Carbamoylphosphate synthase large subunit (sp 88.56
PF02222172 ATP-grasp: ATP-grasp domain; InterPro: IPR003135 T 87.91
COG2232 389 Predicted ATP-dependent carboligase related to bio 86.57
PF02955173 GSH-S_ATP: Prokaryotic glutathione synthetase, ATP 86.51
TIGR02291 317 rimK_rel_E_lig alpha-L-glutamate ligase-related pr 83.75
TIGR01016 386 sucCoAbeta succinyl-CoA synthetase, beta subunit. 80.87
>PF05770 Ins134_P3_kin: Inositol 1, 3, 4-trisphosphate 5/6-kinase; InterPro: IPR008656 This entry represents inositol-tetrakisphosphate 1-kinase which is also called inositol 1,3,4-trisphosphate 5/6-kinase Back     alignment and domain information 
Probab=100.00  E-value=2.5e-76  Score=535.63  Aligned_cols=197  Identities=50%  Similarity=0.845  Sum_probs=170.5

Q ss_pred             CCCCcEEEEEEeChhhhhccchhhHHhHHHhcCcEEEEeeCCCCCCCCCCeeEEEeccCChHHHHHHHHHHHhCCCeEEe
Q 027466           25 QQSKLVVVGYALTSKKTKSFLQPKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLTGKEWRQILEEYRQTHPEVTVL  104 (223)
Q Consensus        25 ~~~~~~~VGy~l~~kK~~~f~~~~~~~~~~~~gi~fv~iD~~~pl~~QgpfDvILHKltd~~~~~~lq~y~~~hP~v~VI  104 (223)
                      ..+++++|||||++||+++|+|++|..+|+++||+||+||+++||++|||||+||||+||..|+++||+|+++||+++||
T Consensus         3 ~~~~~~~VGy~l~~kK~~~~~~~~~~~~~~~~gi~~v~id~~~pl~~QgpfDvIlHKltd~~~~~~l~~y~~~hP~v~vi   82 (307)
T PF05770_consen    3 TQRKRFRVGYALSPKKQKSFIQPSFIDLARSRGIDFVPIDLSKPLEEQGPFDVILHKLTDEDWVQQLEEYIKKHPEVVVI   82 (307)
T ss_dssp             GGGTT-EEEEE--HHHHHHHCCCHHCCCCCCCTTEEEEEECCSSSGCC--SCEEEE--CHCHHHHHHHHHHHH-TTSEEE
T ss_pred             ccccceEEEEEECHHHHHHhhHHHHHHHHHhcCCEEEEcCCCCCcccCCCcEEEEEeCCCHHHHHHHHHHHHHCCCeEEE
Confidence            34679999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CChhhHHhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCCchHHHHhcCCccceEEeeecccCCCCCeeEEEEec
Q 027466          105 DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYD  184 (223)
Q Consensus       105 DP~~~i~~L~dR~~~~~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~KplvA~Gs~~SH~Maivf~  184 (223)
                      ||+++|++|+||.+|++.+++++...+.+.+++|+|++++++.+++.+.++++||+||+||||++||||++||+||||||
T Consensus        83 Dp~~~i~~l~dR~~~~~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agL~fPlI~KPlvA~Gsa~SH~Maivf~  162 (307)
T PF05770_consen   83 DPPDAIRPLLDRQSMLQVLSELELSEGDGRIRVPKFVVINSDAESLPELLKEAGLKFPLICKPLVACGSADSHKMAIVFN  162 (307)
T ss_dssp             T-HHHHHHHCCHHCCHHHHHHHHHHHTCTTEE-S-EEEESSSHCCHHHHHHCTTS-SSEEEEESB-SSTSCCCEEEEE-S
T ss_pred             cCHHHHHHHHCHHHHHHHHHHhhccccCCcccCCceEEEcCCHHHHHHHHHHCCCcccEEeeehhhcCCccceEEEEEEC
Confidence            99999999999999999999988777778999999999987778889999999999999999999999999999999999


Q ss_pred             cccccCCCCceeEEEeeecCcEEEEEEEecceEEEEE
Q 027466          185 QYSLKKLEPPLVLQEFVNHGMQMAFGYLADIHYIIFI  221 (223)
Q Consensus       185 ~~gL~~l~~P~VlQeFINH~gvlfKVYViG~~~~v~~  221 (223)
                      ++||++|++|||+||||||||+|||||||||+++++.
T Consensus       163 ~~gL~~L~~P~VlQeFVNHggvLfKVyVvGd~v~~v~  199 (307)
T PF05770_consen  163 EEGLKDLKPPCVLQEFVNHGGVLFKVYVVGDKVFVVK  199 (307)
T ss_dssp             GGGGTT--SSEEEEE----TTEEEEEEEETTEEEEEE
T ss_pred             HHHHhhcCCCEEEEEeecCCCEEEEEEEecCEEEEEE
Confidence            9999999999999999999999999999999999974

Inositol-tetrakisphosphate 1-kinase can phosphorylate various inositol polyphosphate such as Ins(3,4,5,6)P4 or Ins(1,3,4)P3. This enzyme phosphorylates Ins(3,4,5,6)P4 at position 1 to form Ins(1,3,4,5,6)P5. This reaction is thought to have regulatory importance, since Ins(3,4,5,6)P4 is an inhibitor of plasma membrane Ca(2+)-activated Cl(-) channels, while Ins(1,3,4,5,6)P5 is not. It also phosphorylates Ins(1,3,4)P3 on O-5 and O-6 to form Ins(1,3,4,6)P4, an essential molecule in the hexakisphosphate (InsP6) pathway [, , , , ].; GO: 0000287 magnesium ion binding, 0005524 ATP binding, 0047325 inositol tetrakisphosphate 1-kinase activity, 0052725 inositol-1,3,4-trisphosphate 6-kinase activity, 0052726 inositol-1,3,4-trisphosphate 5-kinase activity, 0032957 inositol trisphosphate metabolic process, 0005622 intracellular; PDB: 1Z2P_X 1Z2O_X 1Z2N_X 2Q7D_A 2QB5_B 2ODT_X.
>PLN02941 inositol-tetrakisphosphate 1-kinase Back     alignment and domain information
>TIGR00768 rimK_fam alpha-L-glutamate ligases, RimK family Back     alignment and domain information
>TIGR02144 LysX_arch Lysine biosynthesis enzyme LysX Back     alignment and domain information
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed Back     alignment and domain information
>PRK10446 ribosomal protein S6 modification protein; Provisional Back     alignment and domain information
>TIGR01205 D_ala_D_alaTIGR D-alanine--D-alanine ligase Back     alignment and domain information
>PF08443 RimK: RimK-like ATP-grasp domain; InterPro: IPR013651 This ATP-grasp domain is found in the ribosomal S6 modification enzyme RimK [] Back     alignment and domain information
>COG0189 RimK Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) [Coenzyme metabolism / Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK14571 D-alanyl-alanine synthetase A; Provisional Back     alignment and domain information
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional Back     alignment and domain information
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed Back     alignment and domain information
>PRK07206 hypothetical protein; Provisional Back     alignment and domain information
>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein Back     alignment and domain information
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2 Back     alignment and domain information
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated Back     alignment and domain information
>PRK02471 bifunctional glutamate--cysteine ligase/glutathione synthetase; Provisional Back     alignment and domain information
>PF13535 ATP-grasp_4: ATP-grasp domain; PDB: 3VMM_A 3LN6_A 3LN7_B 2PN1_A 4DIM_A Back     alignment and domain information
>PRK06849 hypothetical protein; Provisional Back     alignment and domain information
>PRK14569 D-alanyl-alanine synthetase A; Provisional Back     alignment and domain information
>PRK12458 glutathione synthetase; Provisional Back     alignment and domain information
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed Back     alignment and domain information
>PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed Back     alignment and domain information
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103 Back     alignment and domain information
>PRK14572 D-alanyl-alanine synthetase A; Provisional Back     alignment and domain information
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit Back     alignment and domain information
>PRK05246 glutathione synthetase; Provisional Back     alignment and domain information
>TIGR01380 glut_syn glutathione synthetase, prokaryotic Back     alignment and domain information
>PRK00885 phosphoribosylamine--glycine ligase; Provisional Back     alignment and domain information
>PRK08462 biotin carboxylase; Validated Back     alignment and domain information
>PRK05586 biotin carboxylase; Validated Back     alignment and domain information
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed Back     alignment and domain information
>PRK02186 argininosuccinate lyase; Provisional Back     alignment and domain information
>PRK13790 phosphoribosylamine--glycine ligase; Provisional Back     alignment and domain information
>PRK14016 cyanophycin synthetase; Provisional Back     alignment and domain information
>PF07478 Dala_Dala_lig_C: D-ala D-ala ligase C-terminus; InterPro: IPR011095 This entry represents the C-terminal, catalytic domain of the D-alanine--D-alanine ligase enzyme 6 Back     alignment and domain information
>TIGR00877 purD phosphoribosylamine--glycine ligase Back     alignment and domain information
>TIGR02068 cya_phycin_syn cyanophycin synthetase Back     alignment and domain information
>PLN02735 carbamoyl-phosphate synthase Back     alignment and domain information
>PLN02948 phosphoribosylaminoimidazole carboxylase Back     alignment and domain information
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed Back     alignment and domain information
>PRK14570 D-alanyl-alanine synthetase A; Provisional Back     alignment and domain information
>PRK06524 biotin carboxylase-like protein; Validated Back     alignment and domain information
>PRK14568 vanB D-alanine--D-lactate ligase; Provisional Back     alignment and domain information
>PRK06111 acetyl-CoA carboxylase biotin carboxylase subunit; Validated Back     alignment and domain information
>PLN02735 carbamoyl-phosphate synthase Back     alignment and domain information
>TIGR01235 pyruv_carbox pyruvate carboxylase Back     alignment and domain information
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit Back     alignment and domain information
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit Back     alignment and domain information
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated Back     alignment and domain information
>PRK12833 acetyl-CoA carboxylase biotin carboxylase subunit; Provisional Back     alignment and domain information
>PLN02257 phosphoribosylamine--glycine ligase Back     alignment and domain information
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed Back     alignment and domain information
>PRK13789 phosphoribosylamine--glycine ligase; Provisional Back     alignment and domain information
>PRK08654 pyruvate carboxylase subunit A; Validated Back     alignment and domain information
>PRK08463 acetyl-CoA carboxylase subunit A; Validated Back     alignment and domain information
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional Back     alignment and domain information
>TIGR01435 glu_cys_lig_rel glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type Back     alignment and domain information
>PRK06395 phosphoribosylamine--glycine ligase; Provisional Back     alignment and domain information
>PRK12999 pyruvate carboxylase; Reviewed Back     alignment and domain information
>KOG1057 consensus Arp2/3 complex-interacting protein VIP1/Asp1, involved in regulation of actin cytoskeleton [Cytoskeleton] Back     alignment and domain information
>PRK07178 pyruvate carboxylase subunit A; Validated Back     alignment and domain information
>TIGR02712 urea_carbox urea carboxylase Back     alignment and domain information
>PRK13278 purP 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase; Provisional Back     alignment and domain information
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism] Back     alignment and domain information
>PRK05784 phosphoribosylamine--glycine ligase; Provisional Back     alignment and domain information
>PF02655 ATP-grasp_3: ATP-grasp domain; InterPro: IPR003806 The ATP-grasp fold is one of several distinct ATP-binding folds, and is found in enzymes that catalyze the formation of amide bonds, catalyzing the ATP-dependent ligation of a carboxylate-containing molecule to an amino or thiol group-containing molecule [] Back     alignment and domain information
>PF15632 ATPgrasp_Ter: ATP-grasp in the biosynthetic pathway with Ter operon Back     alignment and domain information
>COG0439 AccC Biotin carboxylase [Lipid metabolism] Back     alignment and domain information
>PRK13277 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase-like protein; Provisional Back     alignment and domain information
>PF02786 CPSase_L_D2: Carbamoyl-phosphate synthase L chain, ATP binding domain; InterPro: IPR005479 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below) Back     alignment and domain information
>COG0458 CarB Carbamoylphosphate synthase large subunit (split gene in MJ) [Amino acid transport and metabolism / Nucleotide transport and metabolism] Back     alignment and domain information
>PF02222 ATP-grasp: ATP-grasp domain; InterPro: IPR003135 The ATP-grasp domain has an unusual nucleotide-binding fold, also referred to as palmate, and is found in a superfamily of enzymes including D-alanine-D-alanine ligase, glutathione synthetase, biotin carboxylase, and carbamoyl phosphate synthetase, the ribosomal protein S6 modification enzyme (RimK), urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis Back     alignment and domain information
>COG2232 Predicted ATP-dependent carboligase related to biotin carboxylase [General function prediction only] Back     alignment and domain information
>PF02955 GSH-S_ATP: Prokaryotic glutathione synthetase, ATP-grasp domain; InterPro: IPR004218 Prokaryotic glutathione synthetase 6 Back     alignment and domain information
>TIGR02291 rimK_rel_E_lig alpha-L-glutamate ligase-related protein Back     alignment and domain information
>TIGR01016 sucCoAbeta succinyl-CoA synthetase, beta subunit Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query223
2qb5_A 347 Crystal Structure Of Human Inositol 1,3,4-Trisphosp 5e-20
2q7d_A 346 Crystal Structure Of Human Inositol 1,3,4-Trisphosp 5e-20
2odt_X 328 Structure Of Human Inositol 1,3,4-Trisphosphate 56- 2e-19
>pdb|2QB5|A Chain A, Crystal Structure Of Human Inositol 1,3,4-Trisphosphate 56-Kinase (Itpk1) In Complex With Adp And Mn2+ Length = 347 Back     alignment and structure 
Iteration: 1

 Score = 94.4 bits (233), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 57/186 (30%), Positives = 91/186 (48%), Gaps = 14/186 (7%)
Query: 32  VGYALTSKKTKSFLQPKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLT-------- 83
           VGY L+ KK K         L R +G+  V ++ +RP+ +QGP D+++HKLT        
Sbjct: 22  VGYWLSEKKIKKLNFQAFAELCRKRGMEVVQLNLSRPIEEQGPLDVIIHKLTDVILEADQ 81
Query: 84  ----GKEWRQILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPR 139
                 E     +EY   HPE  VLDP  AI+ L +R    + +  +       ++  P 
Sbjct: 82  NDSQSLELVHRFQEYIDAHPETIVLDPLPAIRTLLDRSKSYELIRKIEAYMEDDRICSPP 141
Query: 140 QLVIER-DASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKLEPPLVLQ 198
            + +          ++ K GLT P + K  VA G+  SHE+++ ++Q  L  ++PP V+Q
Sbjct: 142 FMELTSLCGDDTMRLLEKNGLTFPFICKTRVAHGT-NSHEMAIVFNQEGLNAIQPPCVVQ 200
Query: 199 EFVNHG 204
            F+NH 
Sbjct: 201 NFINHN 206
>pdb|2Q7D|A Chain A, Crystal Structure Of Human Inositol 1,3,4-Trisphosphate 56-Kinase (Itpk1) In Complex With Amppnp And Mn2+ Length = 346 Back     alignment and structure
>pdb|2ODT|X Chain X, Structure Of Human Inositol 1,3,4-Trisphosphate 56-Kinase Length = 328 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query223
2q7d_A 346 Inositol-tetrakisphosphate 1-kinase; inositol kina 5e-59
1z2n_X 324 Inositol 1,3,4-trisphosphate 5/6-kinase; inositol 8e-59
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-05
>2q7d_A Inositol-tetrakisphosphate 1-kinase; inositol kinase, ITPK1, inositol 1,3,4-5/6 phosphate, inositol phosphate, inositolphosphate; HET: ANP; 1.60A {Homo sapiens} PDB: 2qb5_A* 2odt_X Length = 346 Back     alignment and structure
 Score =  188 bits (479), Expect = 5e-59
 Identities = 59/194 (30%), Positives = 93/194 (47%), Gaps = 14/194 (7%)

Query: 24  QQQSKLVVVGYALTSKKTKSFLQPKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLT 83
           Q   K   VGY L+ KK K         L R +G+  V ++ +RP+ +QGP D+++HKLT
Sbjct: 13  QTFLKGKRVGYWLSEKKIKKLNFQAFAELCRKRGMEVVQLNLSRPIEEQGPLDVIIHKLT 72

Query: 84  ------------GKEWRQILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNS 131
                         E     +EY   HPE  VLDP  AI+ L +R    + +  +     
Sbjct: 73  DVILEADQNDSQSLELVHRFQEYIDAHPETIVLDPLPAIRTLLDRSKSYELIRKIEAYME 132

Query: 132 YGKVDVPRQLVIER-DASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKK 190
             ++  P  + +          ++ K GLT P + K  VA G+  SHE+++ ++Q  L  
Sbjct: 133 DDRICSPPFMELTSLCGDDTMRLLEKNGLTFPFICKTRVAHGT-NSHEMAIVFNQEGLNA 191

Query: 191 LEPPLVLQEFVNHG 204
           ++PP V+Q F+NH 
Sbjct: 192 IQPPCVVQNFINHN 205
>1z2n_X Inositol 1,3,4-trisphosphate 5/6-kinase; inositol phosphate kinase, ATP-grAsp, transferase; HET: ADP; 1.20A {Entamoeba histolytica} PDB: 1z2o_X* 1z2p_X* Length = 324 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query223
2q7d_A 346 Inositol-tetrakisphosphate 1-kinase; inositol kina 100.0
1z2n_X 324 Inositol 1,3,4-trisphosphate 5/6-kinase; inositol 99.88
1uc8_A280 LYSX, lysine biosynthesis enzyme; alpha-aminoadipa 99.03
3t7a_A 330 Inositol pyrophosphate kinase; ATP-grAsp fold, tra 98.9
1iow_A 306 DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen pho 98.81
3r5x_A 307 D-alanine--D-alanine ligase; alpha-beta structure, 98.79
3se7_A 346 VANA; alpha-beta structure, D-alanine-D-lactate li 98.72
4eg0_A 317 D-alanine--D-alanine ligase; structural genomics, 98.67
3q2o_A 389 Phosphoribosylaminoimidazole carboxylase, ATPase; 98.4
1i7n_A309 Synapsin II; synapse, phosphorylation, neuropeptid 98.37
2p0a_A 344 Synapsin-3, synapsin III; neurotransmitter release 98.26
1gsa_A316 Glutathione synthetase; ligase; HET: ADP GSH; 2.00 98.24
2i87_A 364 D-alanine-D-alanine ligase; APO; 2.00A {Staphyloco 98.22
3orq_A 377 N5-carboxyaminoimidazole ribonucleotide synthetas; 98.16
1pk8_A422 RAT synapsin I; ATP binding, ATP grAsp, calcium (I 98.15
3k5i_A 403 Phosphoribosyl-aminoimidazole carboxylase; purine 98.15
1ehi_A 377 LMDDL2, D-alanine:D-lactate ligase; ATP-binding. g 98.09
1e4e_A 343 Vancomycin/teicoplanin A-type resistance protein; 98.03
3ln6_A 750 Glutathione biosynthesis bifunctional protein GSH; 98.0
3ax6_A 380 Phosphoribosylaminoimidazole carboxylase, ATPase; 97.99
3aw8_A 369 PURK, phosphoribosylaminoimidazole carboxylase, AT 97.98
3vot_A 425 L-amino acid ligase, BL00235; ATP-grAsp motif, ATP 97.95
4ffl_A 363 PYLC; amino acid, biosynthesis of pyrrolysine, iso 97.94
2z04_A 365 Phosphoribosylaminoimidazole carboxylase ATPase su 97.93
3e5n_A 386 D-alanine-D-alanine ligase A; bacterial blight; 2. 97.89
2pn1_A 331 Carbamoylphosphate synthase large subunit; ZP_0053 97.89
4e4t_A 419 Phosphoribosylaminoimidazole carboxylase, ATPase; 97.88
3lwb_A 373 D-alanine--D-alanine ligase; DDL, D-alanyl--D-alan 97.82
3i12_A 364 D-alanine-D-alanine ligase A; D-alanyl-alanine syn 97.8
1kjq_A 391 GART 2, phosphoribosylglycinamide formyltransferas 97.8
3k3p_A 383 D-alanine--D-alanine ligase; D-alanyl-alanine synt 97.77
3eth_A 355 Phosphoribosylaminoimidazole carboxylase ATPase su 97.76
4fu0_A 357 D-alanine--D-alanine ligase 7; vancomycin resistan 97.74
3mjf_A 431 Phosphoribosylamine--glycine ligase; structural ge 97.73
3lp8_A 442 Phosphoribosylamine-glycine ligase; ssgcid, NIH, n 97.69
2fb9_A 322 D-alanine:D-alanine ligase; 1.90A {Thermus caldoph 97.66
2dwc_A 433 PH0318, 433AA long hypothetical phosphoribosylglyc 97.66
3df7_A 305 Putative ATP-grAsp superfamily protein; putative p 97.63
4dim_A 403 Phosphoribosylglycinamide synthetase; structural g 97.62
2pvp_A 367 D-alanine-D-alanine ligase; 2.40A {Helicobacter py 97.6
2xcl_A 422 Phosphoribosylamine--glycine ligase; GAR-SYN, ATP- 97.54
2ip4_A 417 PURD, phosphoribosylamine--glycine ligase; GAR syn 97.53
2yw2_A 424 Phosphoribosylamine--glycine ligase; glycinamide r 97.5
2qk4_A 452 Trifunctional purine biosynthetic protein adenosi; 97.43
2yrx_A 451 Phosphoribosylglycinamide synthetase; glycinamide 97.42
3tqt_A 372 D-alanine--D-alanine ligase; cell envelope; 1.88A 97.42
3ouz_A 446 Biotin carboxylase; structural genomics, center fo 97.36
3vmm_A 474 Alanine-anticapsin ligase BACD; ATP-grAsp domain, 97.35
3ln7_A 757 Glutathione biosynthesis bifunctional protein GSH; 97.35
2r85_A 334 PURP protein PF1517; ATP-grAsp superfamily, unknow 97.3
1vkz_A 412 Phosphoribosylamine--glycine ligase; TM1250, struc 97.29
1a9x_A 1073 Carbamoyl phosphate synthetase (large chain); amid 97.27
1a9x_A 1073 Carbamoyl phosphate synthetase (large chain); amid 97.16
2dzd_A 461 Pyruvate carboxylase; biotin carboxylase, ligase; 97.09
2w70_A 449 Biotin carboxylase; ligase, ATP-binding, fatty aci 96.95
1ulz_A 451 Pyruvate carboxylase N-terminal domain; biotin car 96.65
2pbz_A 320 Hypothetical protein; NYSGXRC, PSI-II, IMP biosynt 96.61
1w96_A 554 ACC, acetyl-coenzyme A carboxylase; ligase, obesit 96.44
2vpq_A 451 Acetyl-COA carboxylase; bacteria, ATP-grAsp domain 96.44
3glk_A 540 Acetyl-COA carboxylase 2; ATP binding, alternative 96.42
3jrx_A 587 Acetyl-COA carboxylase 2; BC domain, soraphen A, a 96.35
3u9t_A 675 MCC alpha, methylcrotonyl-COA carboxylase, alpha-s 96.25
2cqy_A108 Propionyl-COA carboxylase alpha chain, mitochondri 96.18
3n6r_A 681 Propionyl-COA carboxylase, alpha subunit; protein 96.08
3hbl_A 1150 Pyruvate carboxylase; TIM barrel, ligase; HET: BTI 95.36
2qf7_A 1165 Pyruvate carboxylase protein; multi-domain, multi- 95.33
3va7_A 1236 KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A 94.43
1wr2_A 238 Hypothetical protein PH1789; structural genomics, 94.39
2r7k_A 361 5-formaminoimidazole-4-carboxamide-1-(beta)-D- rib 93.11
3ufx_B 397 Succinyl-COA synthetase beta subunit; ATP-grAsp fo 87.34
2nu8_B 388 SCS-beta, succinyl-COA synthetase beta chain; citr 83.39
>2q7d_A Inositol-tetrakisphosphate 1-kinase; inositol kinase, ITPK1, inositol 1,3,4-5/6 phosphate, inositol phosphate, inositolphosphate; HET: ANP; 1.60A {Homo sapiens} PDB: 2qb5_A* 2odt_X Back     alignment and structure
Probab=100.00  E-value=1.5e-42  Score=316.16  Aligned_cols=196  Identities=30%  Similarity=0.510  Sum_probs=177.0

Q ss_pred             CCCCcEEEEEEeChhhhhccchhhHHhHHHhcCcEEEEeeCCCCCCCCCCeeEEEeccCC------------hHHHHHHH
Q 027466           25 QQSKLVVVGYALTSKKTKSFLQPKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLTG------------KEWRQILE   92 (223)
Q Consensus        25 ~~~~~~~VGy~l~~kK~~~f~~~~~~~~~~~~gi~fv~iD~~~pl~~QgpfDvILHKltd------------~~~~~~lq   92 (223)
                      .++++++|||||++||+++|++++|.+.++++|+++++||++.++.+|++||+||||+++            ..|.+.|+
T Consensus        14 ~~~~~~~vG~~l~~kk~~~~~~~~l~~al~~~G~~~~~iD~~~~~~~~~~~Dvvi~~l~~~~~ea~~~d~~~~~~~~~l~   93 (346)
T 2q7d_A           14 TFLKGKRVGYWLSEKKIKKLNFQAFAELCRKRGMEVVQLNLSRPIEEQGPLDVIIHKLTDVILEADQNDSQSLELVHRFQ   93 (346)
T ss_dssp             GGGTTCEEEEECCHHHHHHHTHHHHHHHHHTTTCEEEECCTTSCSGGGCCCSEEEECCHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cccCceEEEEEECcccchhhhHHHHHHHHHhCCcEEEEcccccchhhcCCCCEEEeCCcccccccccCchhHHHHHHHHH
Confidence            456789999999999999999999999999999999999999999999999999999998            36899999


Q ss_pred             HHHHhCCCeEEeCChhhHHhhcCHHHHHHHHHhccccCCCCcccCCceEEEccC-CCCchHHHHhcCCccceEEeeeccc
Q 027466           93 EYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERD-ASSIPDVVLKAGLTLPLVAKPLVAD  171 (223)
Q Consensus        93 ~y~~~hP~v~VIDP~~~i~~L~dR~~~~~~l~~l~~~~~~~~i~~P~~v~i~~~-~~~~~~~l~~agl~fP~I~KplvA~  171 (223)
                      +|...||.++||||+.+++++.||..|++.|.+...+.....+.+|+++++.+. ..+..+.++..++.||+|+||+.++
T Consensus        94 ~~~~~~~gv~vinp~~ai~~~~dk~~~~~~L~k~~~~~~~~gIp~P~t~~~~~~~~~~~~~~~~~~~lg~P~VvKP~~g~  173 (346)
T 2q7d_A           94 EYIDAHPETIVLDPLPAIRTLLDRSKSYELIRKIEAYMEDDRICSPPFMELTSLCGDDTMRLLEKNGLTFPFICKTRVAH  173 (346)
T ss_dssp             HHHHHCTTSEEESCHHHHHHTTBHHHHHHHHHHHHHHHCBTTEECCCEEEECSCCCTTHHHHHHHTTCCSSEEEECSBCS
T ss_pred             HHHHHCCCeEEcCCHHHHHHhhhHHHHHHHHHhhcccccCCCCCCCCEEEEeCCCHHHHHHHHHhcCCCCCEEEEecCCC
Confidence            999999999999999999999999999999998644334457999999999753 3566667777899999999999999


Q ss_pred             CCCCCeeEEEEeccccccCCCCceeEEEeeecCcEEEEEEEecceEEEEE
Q 027466          172 GSAKSHELSLAYDQYSLKKLEPPLVLQEFVNHGMQMAFGYLADIHYIIFI  221 (223)
Q Consensus       172 Gs~~SH~Maivf~~~gL~~l~~P~VlQeFINH~gvlfKVYViG~~~~v~~  221 (223)
                      ||+ ||.|++|++.++|..+..|+++||||||+|+.|||||||+++..++
T Consensus       174 Gs~-s~~v~~v~~~~~l~~~~~~~lvQefI~~~G~dirv~VvG~~v~~~~  222 (346)
T 2q7d_A          174 GTN-SHEMAIVFNQEGLNAIQPPCVVQNFINHNAVLYKVFVVGESYTVVQ  222 (346)
T ss_dssp             STT-CCEEEEECSGGGTTC--CCEEEEECCCCTTEEEEEEEETTEEEEEE
T ss_pred             cce-eeeeEEecCHHHHHhcCCCEEEEEeeCCCCeEEEEEEECCEEEEEE
Confidence            998 9999999999999999999999999999999999999999987754
>1z2n_X Inositol 1,3,4-trisphosphate 5/6-kinase; inositol phosphate kinase, ATP-grAsp, transferase; HET: ADP; 1.20A {Entamoeba histolytica} PDB: 1z2o_X* 1z2p_X* Back     alignment and structure
>1uc8_A LYSX, lysine biosynthesis enzyme; alpha-aminoadipate pathway, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.00A {Thermus thermophilus} SCOP: c.30.1.6 d.142.1.7 PDB: 1uc9_A* Back     alignment and structure
>3t7a_A Inositol pyrophosphate kinase; ATP-grAsp fold, transferase; HET: ADP; 1.70A {Homo sapiens} PDB: 3t9a_A* 3t9b_A* 3t9c_A* 3t9d_A* 3t9e_A* 3t9f_A* 4gb4_A* 4hn2_A* 3t54_A* 3t99_A* Back     alignment and structure
>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A* Back     alignment and structure
>3r5x_A D-alanine--D-alanine ligase; alpha-beta structure, cytosol, structural genomics, for structural genomics of infectious diseases, csgid; HET: MSE ATP; 2.00A {Bacillus anthracis} PDB: 3r23_A* Back     alignment and structure
>3se7_A VANA; alpha-beta structure, D-alanine-D-lactate ligase, ligase; HET: ATP; 3.07A {} Back     alignment and structure
>4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A 4egj_A Back     alignment and structure
>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A* Back     alignment and structure
>1i7n_A Synapsin II; synapse, phosphorylation, neuropeptide; 1.90A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1i7l_A 1auv_A 1aux_A* Back     alignment and structure
>2p0a_A Synapsin-3, synapsin III; neurotransmitter release, schizophrenia, vesicle T structural genomics, structural genomics consortium, SGC, neuropeptide; HET: ANP; 1.90A {Homo sapiens} Back     alignment and structure
>1gsa_A Glutathione synthetase; ligase; HET: ADP GSH; 2.00A {Escherichia coli} SCOP: c.30.1.3 d.142.1.1 PDB: 1gsh_A 2glt_A 1glv_A Back     alignment and structure
>2i87_A D-alanine-D-alanine ligase; APO; 2.00A {Staphylococcus aureus subsp} PDB: 2i8c_A* 3n8d_A* 2i80_A* Back     alignment and structure
>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A Back     alignment and structure
>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A* Back     alignment and structure
>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A* Back     alignment and structure
>1ehi_A LMDDL2, D-alanine:D-lactate ligase; ATP-binding. grAsp motif for ATP.; HET: ADP PHY; 2.38A {Leuconostoc mesenteroides} SCOP: c.30.1.2 d.142.1.1 Back     alignment and structure
>1e4e_A Vancomycin/teicoplanin A-type resistance protein; ligase, cell WALL, antibiotic resistance, membrane, peptidog synthesis; HET: ADP PHY; 2.5A {Enterococcus faecium} SCOP: c.30.1.2 d.142.1.1 PDB: 1e4e_B* Back     alignment and structure
>3ln6_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamyl cysteine ligase domain, ATP-grAsp domain, HYB enzyme; 2.95A {Streptococcus agalactiae serogroup V} Back     alignment and structure
>3ax6_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp, ATP binding; HET: ADP; 2.20A {Thermotoga maritima} Back     alignment and structure
>3aw8_A PURK, phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp; HET: AMP; 2.60A {Thermus thermophilus} Back     alignment and structure
>3vot_A L-amino acid ligase, BL00235; ATP-grAsp motif, ATP-binding; HET: ADP PG4; 1.80A {Bacillus licheniformis} Back     alignment and structure
>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A* Back     alignment and structure
>3e5n_A D-alanine-D-alanine ligase A; bacterial blight; 2.00A {Xanthomonas oryzae PV} PDB: 3r5f_A* 3rfc_A* Back     alignment and structure
>2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp domain, carbamoylphosphate synthase subunit (split gene in MJ); 2.00A {Exiguobacterium sibiricum} Back     alignment and structure
>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A Back     alignment and structure
>3lwb_A D-alanine--D-alanine ligase; DDL, D-alanyl--D-alanine ligase RV2981C, structural genomics, TB structural GENO consortium, TBSGC; 2.10A {Mycobacterium tuberculosis} Back     alignment and structure
>3i12_A D-alanine-D-alanine ligase A; D-alanyl-alanine synthetase A, ADP binding protein, csgid, A binding, cell shape; HET: ADP; 2.20A {Salmonella typhimurium} PDB: 3q1k_A* Back     alignment and structure
>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A* Back     alignment and structure
>3k3p_A D-alanine--D-alanine ligase; D-alanyl-alanine synthetase, ATP-binding, cell shape, cell W biogenesis/degradation, magnesium, manganese; 2.23A {Streptococcus mutans} Back     alignment and structure
>3eth_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; ATP-grAsp, purine biosynthesis, antimicrobial, ATP-binding, decarboxylase, lyase; HET: ATP; 1.60A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1b6r_A* 3etj_A* 1b6s_A* Back     alignment and structure
>4fu0_A D-alanine--D-alanine ligase 7; vancomycin resistance, peptidoglycan synthesis, D-Ala:D-Ser ATP-grAsp domain; HET: ADP; 2.35A {Enterococcus faecalis} Back     alignment and structure
>3mjf_A Phosphoribosylamine--glycine ligase; structural genomics, CEN structural genomics of infectious diseases, csgid; HET: MSE PGE; 1.47A {Yersinia pestis} PDB: 1gso_A Back     alignment and structure
>3lp8_A Phosphoribosylamine-glycine ligase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.15A {Ehrlichia chaffeensis} Back     alignment and structure
>2fb9_A D-alanine:D-alanine ligase; 1.90A {Thermus caldophilus} PDB: 2zdh_A* 2yzg_A 2yzn_A* 2yzm_A* 2zdg_A* 2zdq_A* Back     alignment and structure
>2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide transferase; purine ribonucleotide biosynthesis; HET: ADP; 1.70A {Pyrococcus horikoshii} PDB: 2czg_A* Back     alignment and structure
>3df7_A Putative ATP-grAsp superfamily protein; putative protein, PSI-II, nysgrc., structural genomics, protein structure initiative; 1.87A {Archaeoglobus fulgidus} Back     alignment and structure
>4dim_A Phosphoribosylglycinamide synthetase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, ligase; 2.61A {Anaerococcus prevotii} Back     alignment and structure
>2pvp_A D-alanine-D-alanine ligase; 2.40A {Helicobacter pylori} Back     alignment and structure
>2xcl_A Phosphoribosylamine--glycine ligase; GAR-SYN, ATP-grAsp, metal binding; HET: ANP; 2.10A {Bacillus subtilis} PDB: 2xd4_A* Back     alignment and structure
>2ip4_A PURD, phosphoribosylamine--glycine ligase; GAR synthetase, purine nucleotid structural genomics, NPPSFA; 2.80A {Thermus thermophilus} Back     alignment and structure
>2yw2_A Phosphoribosylamine--glycine ligase; glycinamide ribonucleotide synthetase, GAR synthetase, ATP B purine nucleotide biosynthetic pathway; HET: ATP; 1.80A {Aquifex aeolicus} PDB: 2yya_A Back     alignment and structure
>2qk4_A Trifunctional purine biosynthetic protein adenosi; purine synthesis, enzyme, protein-ATP complex, structural GE structural genomics consortium, SGC; HET: ATP; 2.45A {Homo sapiens} Back     alignment and structure
>2yrx_A Phosphoribosylglycinamide synthetase; glycinamide ribonucleotide synthetase, GAR synthetase; HET: AMP; 1.90A {Geobacillus kaustophilus} PDB: 2yrw_A* 2ys6_A* 2ys7_A Back     alignment and structure
>3tqt_A D-alanine--D-alanine ligase; cell envelope; 1.88A {Coxiella burnetii} Back     alignment and structure
>3ouz_A Biotin carboxylase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, cytosol, LIG; HET: MSE ADP SRT TLA; 1.90A {Campylobacter jejuni subsp} PDB: 3ouu_A* Back     alignment and structure
>3vmm_A Alanine-anticapsin ligase BACD; ATP-grAsp domain, amino acid ligase, ATP binding; HET: ADP P0D; 2.50A {Bacillus subtilis} Back     alignment and structure
>3ln7_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamylcysteine ligase domain, ATP-grAsp domain, HYBR enzyme, ATP-binding; 3.20A {Pasteurella multocida} Back     alignment and structure
>2r85_A PURP protein PF1517; ATP-grAsp superfamily, unknown function; HET: AMP; 1.70A {Pyrococcus furiosus} SCOP: c.30.1.8 d.142.1.9 PDB: 2r84_A* 2r86_A* 2r87_A* Back     alignment and structure
>1vkz_A Phosphoribosylamine--glycine ligase; TM1250, structural GENO JCSG, protein structure initiative, PSI, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 Back     alignment and structure
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A* Back     alignment and structure
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A* Back     alignment and structure
>2dzd_A Pyruvate carboxylase; biotin carboxylase, ligase; 2.40A {Geobacillus thermodenitrificans} Back     alignment and structure
>2w70_A Biotin carboxylase; ligase, ATP-binding, fatty acid biosynthesis, nucleotide-BIN lipid synthesis, ATP-grAsp domain, fragment screening; HET: L22; 1.77A {Escherichia coli} PDB: 1bnc_A 2j9g_A* 2v58_A* 2v59_A* 2v5a_A* 2vr1_A* 2w6m_A* 1dv1_A* 2w6o_A* 2w6n_A* 2w6q_A* 2w6z_A* 2w6p_A* 2w71_A* 3jzf_A* 3jzi_A* 3rv3_A* 3rup_A* 1dv2_A* 3rv4_A* ... Back     alignment and structure
>1ulz_A Pyruvate carboxylase N-terminal domain; biotin carboxylase; 2.20A {Aquifex aeolicus} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 Back     alignment and structure
>2pbz_A Hypothetical protein; NYSGXRC, PSI-II, IMP biosynthesis, ATP binding protein, PURP structural genomics, protein structure initiative; HET: ATP; 2.50A {Thermococcus kodakarensis} SCOP: c.30.1.8 d.142.1.9 Back     alignment and structure
>1w96_A ACC, acetyl-coenzyme A carboxylase; ligase, obesity, diabetes, fatty acid metabolism, structure-based drug design; HET: S1A; 1.8A {Saccharomyces cerevisiae} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1w93_A Back     alignment and structure
>2vpq_A Acetyl-COA carboxylase; bacteria, ATP-grAsp domain, biotin carboxylase, ligase; HET: ANP; 2.1A {Staphylococcus aureus} Back     alignment and structure
>3glk_A Acetyl-COA carboxylase 2; ATP binding, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis, manganese; 2.10A {Homo sapiens} PDB: 3gid_A 2hjw_A 2yl2_A Back     alignment and structure
>3jrx_A Acetyl-COA carboxylase 2; BC domain, soraphen A, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis; HET: S1A; 2.50A {Homo sapiens} PDB: 3jrw_A* Back     alignment and structure
>2cqy_A Propionyl-COA carboxylase alpha chain, mitochondrial; PCCA, B domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi} Back     alignment and structure
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A* Back     alignment and structure
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A* Back     alignment and structure
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis} Back     alignment and structure
>1wr2_A Hypothetical protein PH1789; structural genomics, NPPSFA, national on protein structural and functional analyses; 2.00A {Pyrococcus horikoshii} Back     alignment and structure
>2r7k_A 5-formaminoimidazole-4-carboxamide-1-(beta)-D- ribofuranosyl 5'-monophosphate synthetase...; ATP-grAsp superfamily, ATP-binding; HET: ACP AMZ; 2.10A {Methanocaldococcus jannaschii} SCOP: c.30.1.8 d.142.1.9 PDB: 2r7l_A* 2r7m_A* 2r7n_A* Back     alignment and structure
>3ufx_B Succinyl-COA synthetase beta subunit; ATP-grAsp fold, ligase; HET: GDP; 2.35A {Thermus aquaticus} Back     alignment and structure
>2nu8_B SCS-beta, succinyl-COA synthetase beta chain; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.23.4.1 d.142.1.4 PDB: 1scu_B* 2nu6_B* 1jkj_B* 2nu7_B* 2nu9_B* 2nua_B* 2scu_B* 1jll_B* 1cqj_B* 1cqi_B* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query223
d1uc8a2192 Lysine biosynthesis enzyme LysX ATP-binding domain 98.02
d1i7na2206 Synapsin II {Rat (Rattus norvegicus) [TaxId: 10116 97.93
d1e4ea2 211 D-alanine:D-lactate ligase VanA, C-domain {Enteroc 97.47
d1iowa2 210 D-ala-D-ala ligase, C-domain {Escherichia coli, ge 97.39
d1kjqa3206 Glycinamide ribonucleotide transformylase PurT, do 96.88
d1ehia2 228 D-alanine:D-lactate ligase VanA, C-domain {Leucono 96.84
d2r7ka2 238 5-formaminoimidazole-4-carboxamide ribonucleotide 96.49
d1a9xa5 275 Carbamoyl phosphate synthetase (CPS), large subuni 96.28
d3etja3198 N5-carboxyaminoimidazole ribonucleotide synthetase 96.26
d2r85a2 235 5-formaminoimidazole-4-carboxamide ribonucleotide 96.18
d1vkza3 220 Glycinamide ribonucleotide synthetase (GAR-syn), d 96.13
d1w96a3 267 Acetyl-CoA carboxylase, BC-M subdomain {Baker's ye 95.32
d1gsaa2192 Prokaryotic glutathione synthetase, C-domain {Esch 94.43
d1a9xa6 259 Carbamoyl phosphate synthetase (CPS), large subuni 94.19
d1ulza3 214 Biotin carboxylase (BC), domain 2 {Aquifex aeolicu 90.92
d1gsoa3 224 Glycinamide ribonucleotide synthetase (GAR-syn), d 90.36
d1uc8a188 Lysine biosynthesis enzyme LysX, N-terminal domain 80.46
>d1uc8a2 d.142.1.7 (A:89-280) Lysine biosynthesis enzyme LysX ATP-binding domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: Lysine biosynthesis enzyme LysX ATP-binding domain
domain: Lysine biosynthesis enzyme LysX ATP-binding domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.02  E-value=4.4e-06  Score=64.63  Aligned_cols=93  Identities=13%  Similarity=0.145  Sum_probs=57.7

Q ss_pred             HHHHHHHHhccccCCCCcccCCceEEEccCCCCchHHHHhcCCccceEEeeecccCCCCCe------eEEEEecc-cccc
Q 027466          117 QSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSH------ELSLAYDQ-YSLK  189 (223)
Q Consensus       117 ~~~~~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~KplvA~Gs~~SH------~Maivf~~-~gL~  189 (223)
                      +.+.+.|++.       .+.+|+++.++ +.+++.+..+  .+.||+|+||....|+..-+      ........ +.+.
T Consensus         2 ~~~~~~l~~~-------GipvP~t~~~~-~~~~~~~~~~--~~g~P~ivKP~~g~~g~gv~~~~~~~~~~~~~~~~~~~~   71 (192)
T d1uc8a2           2 WATSVALAKA-------GLPQPKTALAT-DREEALRLME--AFGYPVVLKPVIGSWGRLLAXXXXXXXXXXXXXXKEVLG   71 (192)
T ss_dssp             HHHHHHHHHT-------TCCCCCEEEES-SHHHHHHHHH--HHCSSEEEECSBCCBCSHHHHHHHHHC------------
T ss_pred             HHHHHHHHHc-------CcCCCCEEEEC-CHHHHHHHHH--HhCCCEEEECCcCCcccceeeccccccchhhHHHHHHHh
Confidence            3456666653       57899999885 3333333343  35799999998877765421      22222221 2232


Q ss_pred             CC-CCceeEEEeeecCcEEEEEEEecceEEE
Q 027466          190 KL-EPPLVLQEFVNHGMQMAFGYLADIHYII  219 (223)
Q Consensus       190 ~l-~~P~VlQeFINH~gvlfKVYViG~~~~v  219 (223)
                      .. ..|+++||||.....-+.++++|+.+..
T Consensus        72 ~~~~~~~lvqefi~g~~~~~~v~~~~g~~~~  102 (192)
T d1uc8a2          72 GFQHQLFYIQEYVEKPGRDIRVFVVGERAIA  102 (192)
T ss_dssp             CTTTTCEEEEECCCCSSCCEEEEEETTEEEE
T ss_pred             ccCCCCEEEEEecCCCCeeEEEEEECCEEEe
Confidence            22 3589999999987778899999988654
>d1i7na2 d.142.1.3 (A:215-420) Synapsin II {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1e4ea2 d.142.1.1 (A:132-342) D-alanine:D-lactate ligase VanA, C-domain {Enterococcus faecium [TaxId: 1352]} Back     information, alignment and structure
>d1iowa2 d.142.1.1 (A:97-306) D-ala-D-ala ligase, C-domain {Escherichia coli, gene ddlB [TaxId: 562]} Back     information, alignment and structure
>d1kjqa3 d.142.1.2 (A:113-318) Glycinamide ribonucleotide transformylase PurT, domain 2 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ehia2 d.142.1.1 (A:135-362) D-alanine:D-lactate ligase VanA, C-domain {Leuconostoc mesenteroides, Ddl2 [TaxId: 1245]} Back     information, alignment and structure
>d2r7ka2 d.142.1.9 (A:124-361) 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP {Methanocaldococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1a9xa5 d.142.1.2 (A:128-402) Carbamoyl phosphate synthetase (CPS), large subunit ATP-binding domains {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d3etja3 d.142.1.2 (A:79-276) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), domain 2 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2r85a2 d.142.1.9 (A:100-334) 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1vkza3 d.142.1.2 (A:94-313) Glycinamide ribonucleotide synthetase (GAR-syn), domain 2 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1w96a3 d.142.1.2 (A:184-450) Acetyl-CoA carboxylase, BC-M subdomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1gsaa2 d.142.1.1 (A:123-314) Prokaryotic glutathione synthetase, C-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1a9xa6 d.142.1.2 (A:677-935) Carbamoyl phosphate synthetase (CPS), large subunit ATP-binding domains {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ulza3 d.142.1.2 (A:115-328) Biotin carboxylase (BC), domain 2 {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1gsoa3 d.142.1.2 (A:104-327) Glycinamide ribonucleotide synthetase (GAR-syn), domain 2 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1uc8a1 c.30.1.6 (A:1-88) Lysine biosynthesis enzyme LysX, N-terminal domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure