Citrus Sinensis ID: 027582

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-
Protein Sequence
MVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPLPNMFD
Secondary Structure (PSIPRED)
cEEEEccccHHHHHHHHccccccccccEEcHHHHcccccccccccccccccccccccccccccHHHHHHHHHHccccccccccccccccccccccccccccccccccEEEEcccHHHHHHHHHHcccccccccHHHHHHccccccccccccccccccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEEEEEcEEEEEEcccccccccEEEccHHHHccccccccHHHcccccccccEEEccccccccHHHHHHHHHHccccccHHHHHHHcHHcccccccccccccccEEEEcccHHHHHHHHHHHHcccccHHHHHHHHccccccccHHHHHHHHHHHcHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHccccccccccc
Coil and Loop (DISEMBL)
MVKVAKCVTYNKVVGifgftgedhigkvsfppvqavpsfpssfphlfsgkdhlrclipcaidqdpyfrmtrdvaprigyhkpaliessffpalqgetgkmsasdpnsaiyvTDSAKAIKNKINKYAFSGGQESVELHRKLGanlevdipVKYLSFFLEDDAELEHIKKeygaggmltGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMavrplpnmfd
Flexible Loop (DISEMBL)
MVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGEtgkmsasdpnsAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEygaggmltgEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPLPNMFD
Low Complexity Region (SEG)
MVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVpsfpssfphlfsGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSakaiknkinkYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPLPNMFD
Disordered region (IsUnstruct)
***VAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPAL***************IYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAV********
Disordered Region (DISOPRED)
MVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSF*****************SAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPLPN***
Disordered Region (DISEMBL)
MVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQG*********PNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPLPNMFD
Disordered Region (DISPRO)
MVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQG*********PNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPLPNMFD
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPLPNMFD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	221	2.2.26 [Sep-21-2011]
P23612	475	Tryptophan--tRNA ligase,	yes	no	0.977	0.454	0.629	6e-79
P23381	471	Tryptophan--tRNA ligase,	yes	no	0.977	0.458	0.615	7e-78
Q5R4J1	472	Tryptophan--tRNA ligase,	yes	no	0.977	0.457	0.615	8e-78
Q6P7B0	481	Tryptophan--tRNA ligase,	yes	no	0.995	0.457	0.622	8e-78
P17248	476	Tryptophan--tRNA ligase,	no	no	0.995	0.462	0.609	1e-77
P32921	481	Tryptophan--tRNA ligase,	yes	no	0.995	0.457	0.618	2e-77
Q55DZ8	400	Tryptophan--tRNA ligase,	yes	no	0.977	0.54	0.554	9e-70
Q09692	395	Tryptophan--tRNA ligase,	yes	no	0.954	0.534	0.530	2e-63
Q12109	432	Tryptophan--tRNA ligase,	yes	no	0.954	0.488	0.511	7e-58
O96771	385	Tryptophan--tRNA ligase O	yes	no	0.950	0.545	0.427	1e-47

>sp|P23612|SYWC_RABIT Tryptophan--tRNA ligase, cytoplasmic OS=Oryctolagus cuniculus GN=WARS PE=2 SV=3

 Score =  293 bits (750), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 136/216 (62%), Positives = 169/216 (78%)

Query: 1   MVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCA 60
           +VK+ K VT+N+V GIFGFT  D IGK+SFP +QA PSF +SFP +F G+  ++CLIPCA
Sbjct: 255 VVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFHGQADIQCLIPCA 314

Query: 61  IDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKN 120
           IDQDPYFRMTRDVAPRIGY KPAL+ S+FFPALQG   KMSASDPNS+I++TD+AK IK 
Sbjct: 315 IDQDPYFRMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNSSIFLTDTAKQIKT 374

Query: 121 KINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEV 180
           K+NK+AFSGG++++E HR+ G N +VD+   YL+FFLEDD +LE I+K+Y +G MLTGE+
Sbjct: 375 KVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQIRKDYSSGAMLTGEL 434

Query: 181 KQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 216
           K+ L  VL  LV  HQ  R  VTDEMV  FM  R L
Sbjct: 435 KKELIDVLQPLVAEHQARRKEVTDEMVKEFMTPRQL 470

T1-TrpRS has aminoacylation activity while T2-TrpRS lacks it. T1-TrpRS and T2-TrpRS possess angiostatic activity. T2-TrpRS inhibits fluid shear stress-activated responses of endothelial cells. Regulates ERK, Akt, and eNOS activation pathways that are associated with angiogenesis, cytoskeletal reorganization and shear stress-responsive gene expression.
Oryctolagus cuniculus (taxid: 9986)
EC: 6EC: .EC: 1EC: .EC: 1EC: .EC: 2

>sp|P23381|SYWC_HUMAN Tryptophan--tRNA ligase, cytoplasmic OS=Homo sapiens GN=WARS PE=1 SV=2

 Score =  290 bits (741), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 133/216 (61%), Positives = 169/216 (78%)

Query: 1   MVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCA 60
           +VK+ K VT+N+V GIFGFT  D IGK+SFP +QA PSF +SFP +F  +  ++CLIPCA
Sbjct: 251 VVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCA 310

Query: 61  IDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKN 120
           IDQDPYFRMTRDVAPRIGY KPAL+ S+FFPALQG   KMSASDPNS+I++TD+AK IK 
Sbjct: 311 IDQDPYFRMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNSSIFLTDTAKQIKT 370

Query: 121 KINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEV 180
           K+NK+AFSGG++++E HR+ G N +VD+   YL+FFLEDD +LE I+K+Y +G MLTGE+
Sbjct: 371 KVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQIRKDYTSGAMLTGEL 430

Query: 181 KQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 216
           K+ L +VL  L+  HQ  R  VTDE+V  FM  R L
Sbjct: 431 KKALIEVLQPLIAEHQARRKEVTDEIVKEFMTPRKL 466

Isoform 1, isoform 2 and T1-TrpRS have aminoacylation activity while T2-TrpRS lacks it. Isoform 2, T1-TrpRS and T2-TrpRS possess angiostatic activity whereas isoform 1 lacks it. T2-TrpRS inhibits fluid shear stress-activated responses of endothelial cells. Regulates ERK, Akt, and eNOS activation pathways that are associated with angiogenesis, cytoskeletal reorganization and shear stress-responsive gene expression.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

>sp|Q5R4J1|SYWC_PONAB Tryptophan--tRNA ligase, cytoplasmic OS=Pongo abelii GN=WARS PE=2 SV=2

 Score =  290 bits (741), Expect = 8e-78,   Method: Compositional matrix adjust.
 Identities = 133/216 (61%), Positives = 169/216 (78%)

Query: 1   MVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCA 60
           +VK+ K VT+N+V GIFGFT  D IGK+SFP +QA PSF +SFP +F  +  ++CLIPCA
Sbjct: 252 VVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCA 311

Query: 61  IDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKN 120
           IDQDPYFRMTRDVAPRIGY KPAL+ S+FFPALQG   KMSASDPNS+I++TD+AK IK 
Sbjct: 312 IDQDPYFRMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNSSIFLTDTAKQIKT 371

Query: 121 KINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEV 180
           K+NK+AFSGG++++E HR+ G N +VD+   YL+FFLEDD +LE I+K+Y +G MLTGE+
Sbjct: 372 KVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQIRKDYTSGAMLTGEL 431

Query: 181 KQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 216
           K+ L +VL  L+  HQ  R  VTDE+V  FM  R L
Sbjct: 432 KKALIEVLQPLIAEHQARRKEVTDEIVKEFMTPRKL 467

T1-TrpRS has aminoacylation activity while T2-TrpRS lacks it. T1-TrpRS and T2-TrpRS possess angiostatic activity. T2-TrpRS inhibits fluid shear stress-activated responses of endothelial cells. Regulates ERK, Akt, and eNOS activation pathways that are associated with angiogenesis, cytoskeletal reorganization and shear stress-responsive gene expression.

Pongo abelii (taxid: 9601)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

>sp|Q6P7B0|SYWC_RAT Tryptophan--tRNA ligase, cytoplasmic OS=Rattus norvegicus GN=Wars PE=1 SV=2

 Score =  289 bits (740), Expect = 8e-78,   Method: Compositional matrix adjust.
 Identities = 137/220 (62%), Positives = 170/220 (77%)

Query: 1   MVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCA 60
           +VK+ K VT+N+V GIFGFT  D IGK+SFP VQA PSF +SFP +F  +  ++CLIPCA
Sbjct: 255 VVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAVQAAPSFSNSFPKIFRDRTDIQCLIPCA 314

Query: 61  IDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKN 120
           IDQDPYFRMTRDVAPRIG+ KPAL+ S+FFPALQG   KMSASDPNS+I++TD+AK IK+
Sbjct: 315 IDQDPYFRMTRDVAPRIGHPKPALLHSTFFPALQGAQTKMSASDPNSSIFLTDTAKQIKS 374

Query: 121 KINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEV 180
           K+NK+AFSGG+++VE HR+ G N EVD+   YL+FFLEDD  LE I+K+Y +G MLTGE+
Sbjct: 375 KVNKHAFSGGRDTVEEHRQFGGNCEVDVSFMYLTFFLEDDDSLEQIRKDYTSGAMLTGEL 434

Query: 181 KQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPLPNMF 220
           K+ L  VL  L+  HQ  R AVT+E V  FMA R L   F
Sbjct: 435 KKTLIDVLQPLIAEHQARRKAVTEETVKEFMAPRQLSFHF 474

T1-TrpRS has aminoacylation activity while T2-TrpRS lacks it. T1-TrpRS and T2-TrpRS possess angiostatic activity. T2-TrpRS inhibits fluid shear stress-activated responses of endothelial cells. Regulates ERK, Akt, and eNOS activation pathways that are associated with angiogenesis, cytoskeletal reorganization and shear stress-responsive gene expression.

Rattus norvegicus (taxid: 10116)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

>sp|P17248|SYWC_BOVIN Tryptophan--tRNA ligase, cytoplasmic OS=Bos taurus GN=WARS PE=1 SV=3

 Score =  289 bits (739), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 134/220 (60%), Positives = 170/220 (77%)

Query: 1   MVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCA 60
           +VK+ K VT+N+V GIFGFT  D IGK+SFP +QA PSF +SFP +F  +  ++CLIPCA
Sbjct: 256 VVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDVQCLIPCA 315

Query: 61  IDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKN 120
           IDQDPYFRMTRDVAPRIGY KPAL+ S+FFPALQG   KMSASDPNS+I++TD+AK IK 
Sbjct: 316 IDQDPYFRMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNSSIFLTDTAKQIKT 375

Query: 121 KINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEV 180
           K+NK+AFSGG+++VE HR+ G N +VD+   YL+FFLEDD +LE I+++Y +G MLTGE+
Sbjct: 376 KVNKHAFSGGRDTVEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQIRRDYTSGAMLTGEL 435

Query: 181 KQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPLPNMF 220
           K+ L +VL  L+  HQ  R  VTDE+V  FM  R L   F
Sbjct: 436 KKELIEVLQPLIAEHQARRKEVTDEIVKEFMTPRKLSYDF 475

T1-TrpRS has aminoacylation activity while T2-TrpRS lacks it. T1-TrpRS and T2-TrpRS possess angiostatic activity. T2-TrpRS inhibits fluid shear stress-activated responses of endothelial cells. Regulates ERK, Akt, and eNOS activation pathways that are associated with angiogenesis, cytoskeletal reorganization and shear stress-responsive gene expression.

Bos taurus (taxid: 9913)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

>sp|P32921|SYWC_MOUSE Tryptophan--tRNA ligase, cytoplasmic OS=Mus musculus GN=Wars PE=1 SV=2

 Score =  288 bits (737), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 136/220 (61%), Positives = 169/220 (76%)

Query: 1   MVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCA 60
           +VK+ K VT+N+V GIFGFT  D IGK+SFP VQA PSF +SFP +F  +  ++CLIPCA
Sbjct: 255 VVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAVQAAPSFSNSFPKIFRDRTDIQCLIPCA 314

Query: 61  IDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKN 120
           IDQDPYFRMTRDVAPRIG+ KPAL+ S+FFPALQG   KMSASDPNS+I++TD+AK IK+
Sbjct: 315 IDQDPYFRMTRDVAPRIGHPKPALLHSTFFPALQGAQTKMSASDPNSSIFLTDTAKQIKS 374

Query: 121 KINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEV 180
           K+NK+AFSGG+++VE HR+ G N EVD+   YL+FFLEDD  LE I+K+Y +G MLTGE+
Sbjct: 375 KVNKHAFSGGRDTVEEHRQFGGNCEVDVSFMYLTFFLEDDDRLEQIRKDYTSGAMLTGEL 434

Query: 181 KQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPLPNMF 220
           K+ L  VL  L+  HQ  R AVT+E V  FM  R L   F
Sbjct: 435 KKTLIDVLQPLIAEHQARRKAVTEETVKEFMTPRQLSFHF 474

T1-TrpRS has aminoacylation activity while T2-TrpRS lacks it. T1-TrpRS and T2-TrpRS possess angiostatic activity. T2-TrpRS inhibits fluid shear stress-activated responses of endothelial cells. Regulates ERK, Akt, and eNOS activation pathways that are associated with angiogenesis, cytoskeletal reorganization and shear stress-responsive gene expression.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

>sp|Q55DZ8|SYWC_DICDI Tryptophan--tRNA ligase, cytoplasmic OS=Dictyostelium discoideum GN=trpS PE=3 SV=1

 Score =  263 bits (671), Expect = 9e-70,   Method: Compositional matrix adjust.
 Identities = 122/220 (55%), Positives = 160/220 (72%), Gaps = 4/220 (1%)

Query: 1   MVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKD----HLRCL 56
           ++K+A+CV  N++  IFGF   D IGK +FPPVQA P FP SFPH+F   D    ++RCL
Sbjct: 179 VLKIARCVNLNQIQNIFGFKESDAIGKFTFPPVQAAPCFPDSFPHIFPLNDPEIKNIRCL 238

Query: 57  IPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAK 116
           IPCAIDQDPYFRMTRD+A RIG+ KPALI S FFPALQG   KMSASD NSA+Y++D+  
Sbjct: 239 IPCAIDQDPYFRMTRDIAHRIGHQKPALIHSKFFPALQGHNTKMSASDTNSAVYLSDTPD 298

Query: 117 AIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGML 176
            +K+KI K+AFSGG  + E   K GA+L VDI  +YL+F LEDD +L+ I   Y  G M+
Sbjct: 299 QVKDKIKKHAFSGGGATKEEQEKNGADLSVDITYEYLTFMLEDDEQLKDIAHRYSTGKMM 358

Query: 177 TGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 216
           TGE+KQ L  ++ +++ RH+ ARA +TDE++  FM++R L
Sbjct: 359 TGEIKQILIDLMNKIIIRHKEARAKITDEVLSTFMSIRKL 398

Dictyostelium discoideum (taxid: 44689)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

>sp|Q09692|SYWC_SCHPO Tryptophan--tRNA ligase, cytoplasmic OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=wrs1 PE=1 SV=1

 Score =  242 bits (617), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 112/211 (53%), Positives = 151/211 (71%)

Query: 1   MVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCA 60
           +V++AKC+T N+    FGFT  D IGK+ F  +QA PSF SSFPH+F+G   + CLIPCA
Sbjct: 177 VVRIAKCITANQSKACFGFTDSDSIGKIHFASIQAAPSFSSSFPHIFNGAKDIPCLIPCA 236

Query: 61  IDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKN 120
           IDQDPYFR+TRDV+ R+ + KPAL+ S FFPALQG   KMSAS  +SAI++TD+   IKN
Sbjct: 237 IDQDPYFRLTRDVSGRLKFKKPALLHSRFFPALQGPQSKMSASKDSSAIFMTDTPNKIKN 296

Query: 121 KINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEV 180
           KIN++AFSGG  ++E+HR+ G N +VD+  +YLSFFL+DD +L+ +   Y AG + TGE+
Sbjct: 297 KINRHAFSGGGATIEIHREKGGNPDVDVAYQYLSFFLDDDEKLKQLYNTYKAGTLSTGEM 356

Query: 181 KQRLAKVLTELVERHQVARAAVTDEMVDAFM 211
           K    K+L + V   Q AR+ V +  +D FM
Sbjct: 357 KGECIKLLQQFVSDFQAARSKVDEATLDMFM 387

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

>sp|Q12109|SYWC_YEAST Tryptophan--tRNA ligase, cytoplasmic OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=WRS1 PE=1 SV=1

 Score =  223 bits (568), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 108/211 (51%), Positives = 145/211 (68%)

Query: 1   MVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCA 60
           +V+V++ +T +    +FGF   D IGK  F  +Q   +FPSSFP++    D   CLIPCA
Sbjct: 197 VVRVSRQITGSTAKAVFGFNDSDCIGKFHFASIQIATAFPSSFPNVLGLPDKTPCLIPCA 256

Query: 61  IDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKN 120
           IDQDPYFR+ RDVA ++ Y KPAL+ S FFPALQG T KMSASD  +AI++TD+ K I+ 
Sbjct: 257 IDQDPYFRVCRDVADKLKYSKPALLHSRFFPALQGSTTKMSASDDTTAIFMTDTPKQIQK 316

Query: 121 KINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEV 180
           KINKYAFSGGQ S +LHR+LG N +VD+  +YLSFF +DD  L+    +Y +G +L+GE+
Sbjct: 317 KINKYAFSGGQVSADLHRELGGNPDVDVAYQYLSFFKDDDVFLKECYDKYKSGELLSGEM 376

Query: 181 KQRLAKVLTELVERHQVARAAVTDEMVDAFM 211
           K+   + L E V+  Q  RA V +E +D FM
Sbjct: 377 KKLCIETLQEFVKAFQERRAQVDEETLDKFM 407

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

>sp|O96771|SYW_ENCCU Tryptophan--tRNA ligase OS=Encephalitozoon cuniculi (strain GB-M1) GN=ECU11_0530 PE=1 SV=2

 Score =  189 bits (480), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 91/213 (42%), Positives = 140/213 (65%), Gaps = 3/213 (1%)

Query: 1   MVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCA 60
           ++K++K +  N+ + +FGF    +IG+V FP  +  P F SSF   F GK  + CL+P A
Sbjct: 173 ILKISKTINLNEAIKVFGFDMSSNIGQVGFPAKEIAPCFSSSFR--FIGKGAM-CLVPAA 229

Query: 61  IDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKN 120
           +DQDP+FR+ RD A  +G  KP+ I  S  P L+G   KMSASDPNS+IY+ D+   I+ 
Sbjct: 230 VDQDPFFRLARDKAKALGEKKPSSIYVSLLPDLKGVNRKMSASDPNSSIYLDDAQDTIRK 289

Query: 121 KINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEV 180
           KI  YA+SGG++++E HR+ G +++VD+P +YL +FL+DD ELE  +  Y  G + + E+
Sbjct: 290 KIIAYAYSGGRKTLEEHREKGGDIDVDVPFEYLKYFLDDDQELEKYRSGYIKGEITSKEM 349

Query: 181 KQRLAKVLTELVERHQVARAAVTDEMVDAFMAV 213
           K++   V+ E V R+Q +R  VTD+ + AF+ +
Sbjct: 350 KEKCVVVIQEFVSRYQESRKRVTDDDLRAFIDI 382

Encephalitozoon cuniculi (strain GB-M1) (taxid: 284813)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	221
449449024	405	PREDICTED: tryptophan--tRNA ligase, cyto	1.0	0.545	0.918	1e-117
225446410	399	PREDICTED: tryptophanyl-tRNA synthetase,	1.0	0.553	0.900	1e-114
255578670	405	tryptophanyl-tRNA synthetase, putative [	1.0	0.545	0.891	1e-113
147832996	399	hypothetical protein VITISV_027725 [Viti	1.0	0.553	0.895	1e-113
297828964	402	tRNA synthetase class I family protein [	1.0	0.549	0.873	1e-112
224102881	404	predicted protein [Populus trichocarpa]	1.0	0.547	0.877	1e-112
358344209	401	Tryptophanyl-tRNA synthetase [Medicago t	1.0	0.551	0.864	1e-111
15229319	402	tryptophanyl-tRNA synthetase [Arabidopsi	1.0	0.549	0.859	1e-110
356504549	404	PREDICTED: tryptophanyl-tRNA synthetase,	1.0	0.547	0.855	1e-109
42572249	402	tryptophanyl-tRNA synthetase [Arabidopsi	1.0	0.549	0.850	1e-109

>gi|449449024|ref|XP_004142265.1| PREDICTED: tryptophan--tRNA ligase, cytoplasmic-like [Cucumis sativus]

 Score =  424 bits (1091), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 203/221 (91%), Positives = 211/221 (95%)

Query: 1   MVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCA 60
           MVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKD LRCLIPCA
Sbjct: 185 MVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDDLRCLIPCA 244

Query: 61  IDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKN 120
           IDQDPYFRMTRDVAPR+GYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAK IKN
Sbjct: 245 IDQDPYFRMTRDVAPRLGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKDIKN 304

Query: 121 KINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEV 180
           KINKYAFSGGQ+S+E HR  GANLEVDIP KYL+FFL+DDAELEHI KEYGAG MLTGEV
Sbjct: 305 KINKYAFSGGQDSIEKHRLYGANLEVDIPTKYLNFFLDDDAELEHITKEYGAGRMLTGEV 364

Query: 181 KQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPLPNMFD 221
           KQRL +VLTE+VERH+ ARAAVTDEMVDAFMAVRPLPNMFD
Sbjct: 365 KQRLIQVLTEMVERHRRARAAVTDEMVDAFMAVRPLPNMFD 405

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225446410|ref|XP_002275626.1| PREDICTED: tryptophanyl-tRNA synthetase, cytoplasmic [Vitis vinifera] gi|302143316|emb|CBI21877.3| unnamed protein product [Vitis vinifera]

 Score =  416 bits (1069), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 199/221 (90%), Positives = 209/221 (94%)

Query: 1   MVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCA 60
           MVKV KCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKD LRCLIPCA
Sbjct: 179 MVKVGKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDDLRCLIPCA 238

Query: 61  IDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKN 120
           IDQDPYFRMTRDVAPRIGYHKPALIES FFPALQGETGKMSASDPNSAIYVTDS K IKN
Sbjct: 239 IDQDPYFRMTRDVAPRIGYHKPALIESLFFPALQGETGKMSASDPNSAIYVTDSGKDIKN 298

Query: 121 KINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEV 180
           KINKYAFSGGQ+S+E HRK GANLEVDIP+KYL FFLEDDAELE+I+ EYGAG MLTG+V
Sbjct: 299 KINKYAFSGGQDSIENHRKYGANLEVDIPIKYLGFFLEDDAELEYIRTEYGAGRMLTGDV 358

Query: 181 KQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPLPNMFD 221
           K+RL +VLTELVERH+ ARAAVTDEMVDAFMAVRPLPNMF+
Sbjct: 359 KKRLIEVLTELVERHRRARAAVTDEMVDAFMAVRPLPNMFN 399

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255578670|ref|XP_002530195.1| tryptophanyl-tRNA synthetase, putative [Ricinus communis] gi|223530288|gb|EEF32185.1| tryptophanyl-tRNA synthetase, putative [Ricinus communis]

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 197/221 (89%), Positives = 210/221 (95%)

Query: 1   MVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCA 60
           MVKV KCVTYNKVVGIFGFTGEDHIGKVSFP VQAVPSFPSSFPHLFSGKD +RCLIPCA
Sbjct: 185 MVKVEKCVTYNKVVGIFGFTGEDHIGKVSFPAVQAVPSFPSSFPHLFSGKDDIRCLIPCA 244

Query: 61  IDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKN 120
           IDQDPYFRMTRDVAPR+G+HKP+LIES FFPALQGETGKMSASDPNSAIY+TDSAK IKN
Sbjct: 245 IDQDPYFRMTRDVAPRLGFHKPSLIESLFFPALQGETGKMSASDPNSAIYLTDSAKEIKN 304

Query: 121 KINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEV 180
           KINKYAFSGGQ+S+E HRK GANLEVDIPVKYL+FFLEDD ELEHIK EY AG MLTGEV
Sbjct: 305 KINKYAFSGGQDSLEKHRKYGANLEVDIPVKYLNFFLEDDDELEHIKTEYAAGRMLTGEV 364

Query: 181 KQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPLPNMFD 221
           K+RLA+VLTE+VERH+VAR+AVTDEMVDAFMAVRPLPNMFD
Sbjct: 365 KKRLAEVLTEIVERHRVARSAVTDEMVDAFMAVRPLPNMFD 405

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147832996|emb|CAN66126.1| hypothetical protein VITISV_027725 [Vitis vinifera]

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 198/221 (89%), Positives = 208/221 (94%)

Query: 1   MVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCA 60
           MVKV KCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKD LRCLIPCA
Sbjct: 179 MVKVGKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDDLRCLIPCA 238

Query: 61  IDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKN 120
           IDQDPYFRMTRDVAPRIGYHKPALIE  FFPALQGETGKMSASDPNSAIYVTDS K IKN
Sbjct: 239 IDQDPYFRMTRDVAPRIGYHKPALIEXLFFPALQGETGKMSASDPNSAIYVTDSGKDIKN 298

Query: 121 KINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEV 180
           KINKYAFSGGQ+S+E HRK GANLEVDIP+KYL FFLEDDAELE+I+ EYGAG MLTG+V
Sbjct: 299 KINKYAFSGGQDSIENHRKYGANLEVDIPIKYLGFFLEDDAELEYIRTEYGAGRMLTGDV 358

Query: 181 KQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPLPNMFD 221
           K+RL +VLTELVERH+ ARAAVTDEMVDAFMAVRPLPNMF+
Sbjct: 359 KKRLIEVLTELVERHRRARAAVTDEMVDAFMAVRPLPNMFN 399

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297828964|ref|XP_002882364.1| tRNA synthetase class I family protein [Arabidopsis lyrata subsp. lyrata] gi|297328204|gb|EFH58623.1| tRNA synthetase class I family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  409 bits (1051), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 193/221 (87%), Positives = 210/221 (95%)

Query: 1   MVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCA 60
           MV+VAKCVT NK +GIFGF+GEDHIGK+SFPPVQAVPSFPSSFPHLF GKD+LRCLIPCA
Sbjct: 182 MVRVAKCVTLNKAMGIFGFSGEDHIGKLSFPPVQAVPSFPSSFPHLFPGKDNLRCLIPCA 241

Query: 61  IDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKN 120
           IDQDPYFRMTRDVAPR+GY KPALIESSFFPALQGE GKMSASDPNSAIYVTD+AK IKN
Sbjct: 242 IDQDPYFRMTRDVAPRLGYSKPALIESSFFPALQGENGKMSASDPNSAIYVTDTAKDIKN 301

Query: 121 KINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEV 180
           KIN+YAFSGGQ+SVE HR+LGANLEVDIPVKYLSFFLEDD+ELEHIKKEYG G MLTGEV
Sbjct: 302 KINRYAFSGGQDSVEKHRELGANLEVDIPVKYLSFFLEDDSELEHIKKEYGEGRMLTGEV 361

Query: 181 KQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPLPNMFD 221
           K+RL +VLTE+VERH+ ARAAVTDEMVDAFMAVRPLP+MF+
Sbjct: 362 KKRLTEVLTEMVERHRRARAAVTDEMVDAFMAVRPLPSMFE 402

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224102881|ref|XP_002312840.1| predicted protein [Populus trichocarpa] gi|118482985|gb|ABK93404.1| unknown [Populus trichocarpa] gi|222849248|gb|EEE86795.1| predicted protein [Populus trichocarpa]

 Score =  408 bits (1049), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 194/221 (87%), Positives = 207/221 (93%)

Query: 1   MVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCA 60
           MVKVAKCVT NKV GIFGF+GEDHIGK+SFPPVQAVPSFPSSFPHLFSGKD LRCLIPCA
Sbjct: 184 MVKVAKCVTLNKVQGIFGFSGEDHIGKISFPPVQAVPSFPSSFPHLFSGKDDLRCLIPCA 243

Query: 61  IDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKN 120
           IDQDPYFRMTRD APRIGYHKP+LIES+FFPALQGETGKMSASDPNSAIYVTDSAK IK+
Sbjct: 244 IDQDPYFRMTRDAAPRIGYHKPSLIESTFFPALQGETGKMSASDPNSAIYVTDSAKVIKS 303

Query: 121 KINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEV 180
           KINKYAFSGGQ+SVE HR+LGANLEVDI VKYL+FFLEDDAELEHIKKEY AG MLTGEV
Sbjct: 304 KINKYAFSGGQDSVEKHRQLGANLEVDISVKYLNFFLEDDAELEHIKKEYAAGRMLTGEV 363

Query: 181 KQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPLPNMFD 221
           K RL  VL+E+VERH+ ARA+VTDE+VDAFMA RPLPNMFD
Sbjct: 364 KGRLGSVLSEIVERHRAARASVTDEVVDAFMAARPLPNMFD 404

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358344209|ref|XP_003636184.1| Tryptophanyl-tRNA synthetase [Medicago truncatula] gi|355502119|gb|AES83322.1| Tryptophanyl-tRNA synthetase [Medicago truncatula]

 Score =  407 bits (1045), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 191/221 (86%), Positives = 209/221 (94%)

Query: 1   MVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCA 60
           MV++ K VTYN+VVGIFGF GEDHIGKVSFPPVQA PSFPSSFPHLF GK +LRCLIPCA
Sbjct: 181 MVQIGKRVTYNQVVGIFGFIGEDHIGKVSFPPVQAAPSFPSSFPHLFEGKGNLRCLIPCA 240

Query: 61  IDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKN 120
           IDQDPYFRMTRDVAP+IGY+KPALIESSFFPALQGETGKMSASDPNSAIYVTDSAK IKN
Sbjct: 241 IDQDPYFRMTRDVAPKIGYNKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKDIKN 300

Query: 121 KINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEV 180
           K+N+YAFSGGQ+S+E HR+LGANLEVDIP+KYLSFFLEDDAELEHIKKEYGAG MLTGEV
Sbjct: 301 KVNRYAFSGGQDSIEKHRQLGANLEVDIPIKYLSFFLEDDAELEHIKKEYGAGRMLTGEV 360

Query: 181 KQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPLPNMFD 221
           KQRL +VLTE+VERH+ ARA VT++MVDAFMAVRPLP+MFD
Sbjct: 361 KQRLIQVLTEIVERHRTARANVTEKMVDAFMAVRPLPHMFD 401

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15229319|ref|NP_187110.1| tryptophanyl-tRNA synthetase [Arabidopsis thaliana] gi|145331754|ref|NP_001078104.1| tryptophanyl-tRNA synthetase [Arabidopsis thaliana] gi|6175164|gb|AAF04890.1|AC011437_5 putative tryptophanyl-tRNA synthetase [Arabidopsis thaliana] gi|19310593|gb|AAL85027.1| putative tryptophanyl-tRNA synthetase [Arabidopsis thaliana] gi|21436361|gb|AAM51350.1| putative tryptophanyl-tRNA synthetase [Arabidopsis thaliana] gi|110740619|dbj|BAE98413.1| putative tryptophanyl-tRNA synthetase [Arabidopsis thaliana] gi|332640582|gb|AEE74103.1| tryptophanyl-tRNA synthetase [Arabidopsis thaliana] gi|332640584|gb|AEE74105.1| tryptophanyl-tRNA synthetase [Arabidopsis thaliana]

 Score =  402 bits (1032), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 190/221 (85%), Positives = 207/221 (93%)

Query: 1   MVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCA 60
           MVKV KCVT NK +GIFGF+GED I K+SFPPVQAVPSFPSSFPHLF GKD+LRCLIPCA
Sbjct: 182 MVKVGKCVTLNKAMGIFGFSGEDPIAKLSFPPVQAVPSFPSSFPHLFPGKDNLRCLIPCA 241

Query: 61  IDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKN 120
           IDQDPYFRMTRDVAPR+GY KPALIES+FFPALQGE GKMSASDPNSAIYVTDSAK IKN
Sbjct: 242 IDQDPYFRMTRDVAPRLGYSKPALIESTFFPALQGENGKMSASDPNSAIYVTDSAKDIKN 301

Query: 121 KINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEV 180
           KIN+YAFSGGQ+S+E HR+LGANLEVDIPVKYLSFFLEDD+ELEHIKKEYG G MLTGEV
Sbjct: 302 KINRYAFSGGQDSIEKHRELGANLEVDIPVKYLSFFLEDDSELEHIKKEYGEGRMLTGEV 361

Query: 181 KQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPLPNMFD 221
           K+RL +VLTE+VERH+ ARAAVTDEMVDAFMAVRPLP+MF+
Sbjct: 362 KKRLTEVLTEIVERHRRARAAVTDEMVDAFMAVRPLPSMFE 402

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356504549|ref|XP_003521058.1| PREDICTED: tryptophanyl-tRNA synthetase, cytoplasmic-like [Glycine max]

 Score =  400 bits (1027), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 189/221 (85%), Positives = 208/221 (94%)

Query: 1   MVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCA 60
           M +V K VTYN+ VGIFGF GEDHIGKVSFPPVQAVPSFPSSFPHLFSGK++LRCLIPCA
Sbjct: 184 MCEVGKRVTYNQAVGIFGFVGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKENLRCLIPCA 243

Query: 61  IDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKN 120
           IDQDPYFRMTRDVAP++G+HKPALIES FFPALQGETGKMSASDPNSAIYVTDSAK IKN
Sbjct: 244 IDQDPYFRMTRDVAPKMGFHKPALIESLFFPALQGETGKMSASDPNSAIYVTDSAKDIKN 303

Query: 121 KINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEV 180
           K+NK+AFSGGQ+S+E HR+LGANLEVDIPVKYL+FFLEDD ELEHIKKEYG G MLTGEV
Sbjct: 304 KVNKHAFSGGQDSIEKHRQLGANLEVDIPVKYLTFFLEDDDELEHIKKEYGEGRMLTGEV 363

Query: 181 KQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPLPNMFD 221
           KQRL +VLTELVERH+ ARA+VT+EMVDAFMA+RPLP+MFD
Sbjct: 364 KQRLIQVLTELVERHRRARASVTEEMVDAFMAIRPLPHMFD 404

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42572249|ref|NP_974219.1| tryptophanyl-tRNA synthetase [Arabidopsis thaliana] gi|332640583|gb|AEE74104.1| tryptophanyl-tRNA synthetase [Arabidopsis thaliana]

 Score =  398 bits (1022), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 188/221 (85%), Positives = 206/221 (93%)

Query: 1   MVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCA 60
           MVKV KCVT NK +GIFGF+GED I K+SFPPVQAVPSFPSSFPHLF GKD+LRCLIPCA
Sbjct: 182 MVKVGKCVTLNKAMGIFGFSGEDPIAKLSFPPVQAVPSFPSSFPHLFPGKDNLRCLIPCA 241

Query: 61  IDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKN 120
           IDQDPYFRMTRDVAPR+GY KPALIES+FFPALQ + GKMSASDPNSAIYVTDSAK IKN
Sbjct: 242 IDQDPYFRMTRDVAPRLGYSKPALIESTFFPALQAKNGKMSASDPNSAIYVTDSAKDIKN 301

Query: 121 KINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEV 180
           KIN+YAFSGGQ+S+E HR+LGANLEVDIPVKYLSFFLEDD+ELEHIKKEYG G MLTGEV
Sbjct: 302 KINRYAFSGGQDSIEKHRELGANLEVDIPVKYLSFFLEDDSELEHIKKEYGEGRMLTGEV 361

Query: 181 KQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPLPNMFD 221
           K+RL +VLTE+VERH+ ARAAVTDEMVDAFMAVRPLP+MF+
Sbjct: 362 KKRLTEVLTEIVERHRRARAAVTDEMVDAFMAVRPLPSMFE 402

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	221
TAIR|locus:2084993	402	AT3G04600 [Arabidopsis thalian	1.0	0.549	0.773	6.7e-88
UNIPROTKB|F1SAP4	482	WARS "Uncharacterized protein"	1.0	0.458	0.542	1.2e-60
UNIPROTKB|E2RGG9	476	WARS "Uncharacterized protein"	0.977	0.453	0.550	1.5e-60
UNIPROTKB|P23381	471	WARS "Tryptophan--tRNA ligase,	0.977	0.458	0.550	1.9e-60
RGD|1308278	481	Wars "tryptophanyl-tRNA synthe	0.977	0.449	0.564	1.9e-60
UNIPROTKB|Q6P7B0	481	Wars "Tryptophan--tRNA ligase,	0.977	0.449	0.564	1.9e-60
UNIPROTKB|P17248	476	WARS "Tryptophan--tRNA ligase,	0.977	0.453	0.550	3.1e-60
MGI|MGI:104630	481	Wars "tryptophanyl-tRNA synthe	0.977	0.449	0.560	5e-60
UNIPROTKB|E1C2Z5	473	WARS "Uncharacterized protein"	0.977	0.456	0.532	4e-58
FB|FBgn0010803	430	Aats-trp "Tryptophanyl-tRNA sy	0.972	0.5	0.541	6.6e-58

TAIR|locus:2084993 AT3G04600 [Arabidopsis thaliana (taxid:3702)]

 Score = 878 (314.1 bits), Expect = 6.7e-88, P = 6.7e-88
 Identities = 171/221 (77%), Positives = 187/221 (84%)

Query:     1 MVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVXXXXXXXXXXXXGKDHLRCLIPCA 60
             MVKV KCVT NK +GIFGF+GED I K+SFPPVQAV            GKD+LRCLIPCA
Sbjct:   182 MVKVGKCVTLNKAMGIFGFSGEDPIAKLSFPPVQAVPSFPSSFPHLFPGKDNLRCLIPCA 241

Query:    61 IDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSXXXXXX 120
             IDQDPYFRMTRDVAPR+GY KPALIES+FFPALQGE GKMSASDPNSAIYVTDS      
Sbjct:   242 IDQDPYFRMTRDVAPRLGYSKPALIESTFFPALQGENGKMSASDPNSAIYVTDSAKDIKN 301

Query:   121 XXXXYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEV 180
                 YAFSGGQ+S+E HR+LGANLEVDIPVKYLSFFLEDD+ELEHIKKEYG G MLTGEV
Sbjct:   302 KINRYAFSGGQDSIEKHRELGANLEVDIPVKYLSFFLEDDSELEHIKKEYGEGRMLTGEV 361

Query:   181 KQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPLPNMFD 221
             K+RL +VLTE+VERH+ ARAAVTDEMVDAFMAVRPLP+MF+
Sbjct:   362 KKRLTEVLTEIVERHRRARAAVTDEMVDAFMAVRPLPSMFE 402

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004812 "aminoacyl-tRNA ligase activity" evidence=IEA;ISS

GO:0004830 "tryptophan-tRNA ligase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0006418 "tRNA aminoacylation for protein translation" evidence=IEA;ISS

GO:0006436 "tryptophanyl-tRNA aminoacylation" evidence=IEA;ISS

GO:0005829 "cytosol" evidence=ISS;IDA

GO:0009165 "nucleotide biosynthetic process" evidence=RCA

UNIPROTKB|F1SAP4 WARS "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 621 (223.7 bits), Expect = 1.2e-60, P = 1.2e-60
 Identities = 120/221 (54%), Positives = 153/221 (69%)

Query:     1 MVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVXXXXXXXXXXXXGKDHLRCLIPCA 60
             +VK+ K VT+N+V GIFGFT  D IGK+SFP +QA              +  ++CLIPCA
Sbjct:   256 VVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSSSFPQIFRDRTDIQCLIPCA 315

Query:    61 IDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSXXXXXX 120
             IDQDPYFRMTRDVAPRIGY KPAL+ S+FFPALQG   KMSASDPNS+I++TD+      
Sbjct:   316 IDQDPYFRMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNSSIFLTDTAKQIKT 375

Query:   121 XXXXYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEV 180
                 +AFSGG++++E HR+ G N +VD+   YL+FFLEDD  LE I+K+Y +G MLTGE+
Sbjct:   376 KVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDRLEQIRKDYSSGAMLTGEL 435

Query:   181 KQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPLPNMFD 221
             K+ L +VL  L+  HQ  R  VTDE+V  FM  R L   F+
Sbjct:   436 KKVLIEVLQPLIAEHQARRKEVTDEVVKEFMTPRKLSYDFE 476

GO:0045765 "regulation of angiogenesis" evidence=IEA

GO:0006436 "tryptophanyl-tRNA aminoacylation" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0004830 "tryptophan-tRNA ligase activity" evidence=IEA

UNIPROTKB|E2RGG9 WARS "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 620 (223.3 bits), Expect = 1.5e-60, P = 1.5e-60
 Identities = 119/216 (55%), Positives = 152/216 (70%)

Query:     1 MVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVXXXXXXXXXXXXGKDHLRCLIPCA 60
             +VK+ K VT+N+V GIFGFT  D IGK+SFP +QA              +  ++CLIPCA
Sbjct:   256 VVKIQKHVTFNQVKGIFGFTDSDSIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCA 315

Query:    61 IDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSXXXXXX 120
             IDQDPYFRMTRDVAPRIGY KPAL+ S+FFPALQG   KMSASDPNS+I++TD+      
Sbjct:   316 IDQDPYFRMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNSSIFLTDTAKQIKT 375

Query:   121 XXXXYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEV 180
                 +AFSGG++++E HR+ G N +VD+   YL+FFLEDD +LE I+K+Y +G MLTGE+
Sbjct:   376 KVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQIRKDYTSGDMLTGEL 435

Query:   181 KQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 216
             K+ L +VL  L+  HQ  R  VTDE+V  FM  R L
Sbjct:   436 KKTLIEVLQPLIAEHQARRKEVTDEIVKEFMTPRKL 471

GO:0045765 "regulation of angiogenesis" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006436 "tryptophanyl-tRNA aminoacylation" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0004830 "tryptophan-tRNA ligase activity" evidence=IEA

UNIPROTKB|P23381 WARS "Tryptophan--tRNA ligase, cytoplasmic" [Homo sapiens (taxid:9606)]

 Score = 619 (223.0 bits), Expect = 1.9e-60, P = 1.9e-60
 Identities = 119/216 (55%), Positives = 152/216 (70%)

Query:     1 MVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVXXXXXXXXXXXXGKDHLRCLIPCA 60
             +VK+ K VT+N+V GIFGFT  D IGK+SFP +QA              +  ++CLIPCA
Sbjct:   251 VVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCA 310

Query:    61 IDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSXXXXXX 120
             IDQDPYFRMTRDVAPRIGY KPAL+ S+FFPALQG   KMSASDPNS+I++TD+      
Sbjct:   311 IDQDPYFRMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNSSIFLTDTAKQIKT 370

Query:   121 XXXXYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEV 180
                 +AFSGG++++E HR+ G N +VD+   YL+FFLEDD +LE I+K+Y +G MLTGE+
Sbjct:   371 KVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQIRKDYTSGAMLTGEL 430

Query:   181 KQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 216
             K+ L +VL  L+  HQ  R  VTDE+V  FM  R L
Sbjct:   431 KKALIEVLQPLIAEHQARRKEVTDEIVKEFMTPRKL 466

GO:0001525 "angiogenesis" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0004830 "tryptophan-tRNA ligase activity" evidence=NAS;TAS

GO:0006436 "tryptophanyl-tRNA aminoacylation" evidence=NAS

GO:0005737 "cytoplasm" evidence=TAS

GO:0045765 "regulation of angiogenesis" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0006412 "translation" evidence=TAS

GO:0008285 "negative regulation of cell proliferation" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006418 "tRNA aminoacylation for protein translation" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

RGD|1308278 Wars "tryptophanyl-tRNA synthetase" [Rattus norvegicus (taxid:10116)]

 Score = 619 (223.0 bits), Expect = 1.9e-60, P = 1.9e-60
 Identities = 122/216 (56%), Positives = 151/216 (69%)

Query:     1 MVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVXXXXXXXXXXXXGKDHLRCLIPCA 60
             +VK+ K VT+N+V GIFGFT  D IGK+SFP VQA              +  ++CLIPCA
Sbjct:   255 VVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAVQAAPSFSNSFPKIFRDRTDIQCLIPCA 314

Query:    61 IDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSXXXXXX 120
             IDQDPYFRMTRDVAPRIG+ KPAL+ S+FFPALQG   KMSASDPNS+I++TD+      
Sbjct:   315 IDQDPYFRMTRDVAPRIGHPKPALLHSTFFPALQGAQTKMSASDPNSSIFLTDTAKQIKS 374

Query:   121 XXXXYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEV 180
                 +AFSGG+++VE HR+ G N EVD+   YL+FFLEDD  LE I+K+Y +G MLTGE+
Sbjct:   375 KVNKHAFSGGRDTVEEHRQFGGNCEVDVSFMYLTFFLEDDDSLEQIRKDYTSGAMLTGEL 434

Query:   181 KQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 216
             K+ L  VL  L+  HQ  R AVT+E V  FMA R L
Sbjct:   435 KKTLIDVLQPLIAEHQARRKAVTEETVKEFMAPRQL 470

GO:0001525 "angiogenesis" evidence=IEA

GO:0004830 "tryptophan-tRNA ligase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006436 "tryptophanyl-tRNA aminoacylation" evidence=IEA

GO:0045765 "regulation of angiogenesis" evidence=IEA;ISO

UNIPROTKB|Q6P7B0 Wars "Tryptophan--tRNA ligase, cytoplasmic" [Rattus norvegicus (taxid:10116)]

 Score = 619 (223.0 bits), Expect = 1.9e-60, P = 1.9e-60
 Identities = 122/216 (56%), Positives = 151/216 (69%)

Query:     1 MVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVXXXXXXXXXXXXGKDHLRCLIPCA 60
             +VK+ K VT+N+V GIFGFT  D IGK+SFP VQA              +  ++CLIPCA
Sbjct:   255 VVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAVQAAPSFSNSFPKIFRDRTDIQCLIPCA 314

Query:    61 IDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSXXXXXX 120
             IDQDPYFRMTRDVAPRIG+ KPAL+ S+FFPALQG   KMSASDPNS+I++TD+      
Sbjct:   315 IDQDPYFRMTRDVAPRIGHPKPALLHSTFFPALQGAQTKMSASDPNSSIFLTDTAKQIKS 374

Query:   121 XXXXYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEV 180
                 +AFSGG+++VE HR+ G N EVD+   YL+FFLEDD  LE I+K+Y +G MLTGE+
Sbjct:   375 KVNKHAFSGGRDTVEEHRQFGGNCEVDVSFMYLTFFLEDDDSLEQIRKDYTSGAMLTGEL 434

Query:   181 KQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 216
             K+ L  VL  L+  HQ  R AVT+E V  FMA R L
Sbjct:   435 KKTLIDVLQPLIAEHQARRKAVTEETVKEFMAPRQL 470

GO:0005524 "ATP binding" evidence=IEA

GO:0006436 "tryptophanyl-tRNA aminoacylation" evidence=IEA

GO:0045765 "regulation of angiogenesis" evidence=IEA

UNIPROTKB|P17248 WARS "Tryptophan--tRNA ligase, cytoplasmic" [Bos taurus (taxid:9913)]

 Score = 617 (222.3 bits), Expect = 3.1e-60, P = 3.1e-60
 Identities = 119/216 (55%), Positives = 152/216 (70%)

Query:     1 MVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVXXXXXXXXXXXXGKDHLRCLIPCA 60
             +VK+ K VT+N+V GIFGFT  D IGK+SFP +QA              +  ++CLIPCA
Sbjct:   256 VVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDVQCLIPCA 315

Query:    61 IDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSXXXXXX 120
             IDQDPYFRMTRDVAPRIGY KPAL+ S+FFPALQG   KMSASDPNS+I++TD+      
Sbjct:   316 IDQDPYFRMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNSSIFLTDTAKQIKT 375

Query:   121 XXXXYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEV 180
                 +AFSGG+++VE HR+ G N +VD+   YL+FFLEDD +LE I+++Y +G MLTGE+
Sbjct:   376 KVNKHAFSGGRDTVEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQIRRDYTSGAMLTGEL 435

Query:   181 KQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 216
             K+ L +VL  L+  HQ  R  VTDE+V  FM  R L
Sbjct:   436 KKELIEVLQPLIAEHQARRKEVTDEIVKEFMTPRKL 471

GO:0005737 "cytoplasm" evidence=IEA

GO:0045765 "regulation of angiogenesis" evidence=IEA

GO:0004830 "tryptophan-tRNA ligase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006436 "tryptophanyl-tRNA aminoacylation" evidence=IEA

MGI|MGI:104630 Wars "tryptophanyl-tRNA synthetase" [Mus musculus (taxid:10090)]

 Score = 615 (221.5 bits), Expect = 5.0e-60, P = 5.0e-60
 Identities = 121/216 (56%), Positives = 150/216 (69%)

Query:     1 MVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVXXXXXXXXXXXXGKDHLRCLIPCA 60
             +VK+ K VT+N+V GIFGFT  D IGK+SFP VQA              +  ++CLIPCA
Sbjct:   255 VVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAVQAAPSFSNSFPKIFRDRTDIQCLIPCA 314

Query:    61 IDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSXXXXXX 120
             IDQDPYFRMTRDVAPRIG+ KPAL+ S+FFPALQG   KMSASDPNS+I++TD+      
Sbjct:   315 IDQDPYFRMTRDVAPRIGHPKPALLHSTFFPALQGAQTKMSASDPNSSIFLTDTAKQIKS 374

Query:   121 XXXXYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEV 180
                 +AFSGG+++VE HR+ G N EVD+   YL+FFLEDD  LE I+K+Y +G MLTGE+
Sbjct:   375 KVNKHAFSGGRDTVEEHRQFGGNCEVDVSFMYLTFFLEDDDRLEQIRKDYTSGAMLTGEL 434

Query:   181 KQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 216
             K+ L  VL  L+  HQ  R AVT+E V  FM  R L
Sbjct:   435 KKTLIDVLQPLIAEHQARRKAVTEETVKEFMTPRQL 470

GO:0000166 "nucleotide binding" evidence=IEA

GO:0001525 "angiogenesis" evidence=IEA

GO:0004812 "aminoacyl-tRNA ligase activity" evidence=IEA

GO:0004830 "tryptophan-tRNA ligase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0006418 "tRNA aminoacylation for protein translation" evidence=IEA

GO:0006436 "tryptophanyl-tRNA aminoacylation" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0045765 "regulation of angiogenesis" evidence=ISO

UNIPROTKB|E1C2Z5 WARS "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 597 (215.2 bits), Expect = 4.0e-58, P = 4.0e-58
 Identities = 115/216 (53%), Positives = 150/216 (69%)

Query:     1 MVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVXXXXXXXXXXXXGKDHLRCLIPCA 60
             ++KV K VT+N+V GIFGFT  D IGK+SFP +QA             GK++++CLIPCA
Sbjct:   254 IIKVQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSSSFPQIFNGKENIQCLIPCA 313

Query:    61 IDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSXXXXXX 120
             IDQDPYFRMTRDVAPRIGY KPAL+ S FFPALQG   KMSASD NS++++ D+      
Sbjct:   314 IDQDPYFRMTRDVAPRIGYPKPALLHSVFFPALQGAQTKMSASDVNSSVFLNDTPKQIKT 373

Query:   121 XXXXYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEV 180
                 +AFSGG++++E HRK G N +VD+   YL+FFLEDD +LE +K+ Y +G +LTGE+
Sbjct:   374 KINKHAFSGGRDTIEEHRKYGGNCDVDVSFMYLTFFLEDDDKLEQLKQAYTSGELLTGEL 433

Query:   181 KQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 216
             K+ L + L  L+  HQ  R  +TDE+V  FM  R L
Sbjct:   434 KKVLIETLQPLIAAHQERRKQITDEVVKQFMTPRKL 469

GO:0004830 "tryptophan-tRNA ligase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006436 "tryptophanyl-tRNA aminoacylation" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0045765 "regulation of angiogenesis" evidence=IEA

FB|FBgn0010803 Aats-trp "Tryptophanyl-tRNA synthetase" [Drosophila melanogaster (taxid:7227)]

 Score = 595 (214.5 bits), Expect = 6.6e-58, P = 6.6e-58
 Identities = 117/216 (54%), Positives = 147/216 (68%)

Query:     1 MVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVXXXXXXXXXXXXGKDHLRCLIPCA 60
             ++++ KCVT+N+V GIFGF   D IGK+ FP  QA             G   + CLIPCA
Sbjct:   212 IIRIQKCVTFNQVKGIFGFGDSDIIGKIGFPAAQAAPAISSTFPFIF-GNRKVHCLIPCA 270

Query:    61 IDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSXXXXXX 120
             IDQDPYFRMTRDVAPR+G+ K ALI S+FFPALQG   KMSASD NSA+Y+TD+      
Sbjct:   271 IDQDPYFRMTRDVAPRLGFPKCALIHSTFFPALQGAKTKMSASDQNSAVYLTDTPKQIKN 330

Query:   121 XXXXYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEV 180
                 YAFSGG+ SVE HRKLG   EVD+  + L FFLEDDA+LE ++  Y  G MLTGE+
Sbjct:   331 KINKYAFSGGRVSVEEHRKLGGVPEVDVSYQLLKFFLEDDAKLEEVRVAYSKGEMLTGEI 390

Query:   181 KQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 216
             K+   + LT +VE+HQ AR  +TDE++D +  +RPL
Sbjct:   391 KKLAVETLTPIVEQHQAARKLITDEVLDKYFELRPL 426

GO:0006436 "tryptophanyl-tRNA aminoacylation" evidence=ISS;IDA

GO:0004830 "tryptophan-tRNA ligase activity" evidence=ISS;IDA

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0022008 "neurogenesis" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	6.1.1.2	0.824
3rd Layer	6.1.1	0.766

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	221
PLN02486	383	PLN02486, PLN02486, aminoacyl-tRNA ligase	1e-159
TIGR00233	327	TIGR00233, trpS, tryptophanyl-tRNA synthetase	3e-66
PRK12285	368	PRK12285, PRK12285, tryptophanyl-tRNA synthetase;	2e-63
cd00806	280	cd00806, TrpRS_core, catalytic core domain of tryp	2e-60
COG0180	314	COG0180, TrpS, Tryptophanyl-tRNA synthetase [Trans	2e-46
PRK08560	329	PRK08560, PRK08560, tyrosyl-tRNA synthetase; Valid	3e-15
pfam00579	291	pfam00579, tRNA-synt_1b, tRNA synthetases class I	7e-15
PRK00927	333	PRK00927, PRK00927, tryptophanyl-tRNA synthetase;	9e-13
PRK12282	333	PRK12282, PRK12282, tryptophanyl-tRNA synthetase I	6e-11
cd00805	269	cd00805, TyrRS_core, catalytic core domain of tyro	4e-07
PTZ00126	383	PTZ00126, PTZ00126, tyrosyl-tRNA synthetase; Provi	2e-06
COG0162	401	COG0162, TyrS, Tyrosyl-tRNA synthetase [Translatio	0.004

>gnl|CDD|178104 PLN02486, PLN02486, aminoacyl-tRNA ligase

 Score =  443 bits (1142), Expect = e-159
 Identities = 185/217 (85%), Positives = 202/217 (93%)

Query: 1   MVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCA 60
           MVK+AKCVT N+V GIFGF+GED+IGK+SFP VQA PSFPSSFPHLF GKD LRCLIPCA
Sbjct: 167 MVKIAKCVTLNQVRGIFGFSGEDNIGKISFPAVQAAPSFPSSFPHLFGGKDKLRCLIPCA 226

Query: 61  IDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKN 120
           IDQDPYFRMTRDVAPR+GY+KPALIES FFPALQGE+GKMSASDPNSAIYVTD+ K IKN
Sbjct: 227 IDQDPYFRMTRDVAPRLGYYKPALIESRFFPALQGESGKMSASDPNSAIYVTDTPKEIKN 286

Query: 121 KINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEV 180
           KINKYAFSGGQ++VE HR+LGANLEVDIP KYL+FFLEDDAELE IKKEYG+G MLTGEV
Sbjct: 287 KINKYAFSGGQDTVEEHRELGANLEVDIPWKYLNFFLEDDAELERIKKEYGSGRMLTGEV 346

Query: 181 KQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPLP 217
           K+RL +VLTE+VERHQ ARAAVTDEMVDAFMAVRPLP
Sbjct: 347 KKRLIEVLTEIVERHQRARAAVTDEMVDAFMAVRPLP 383

Length = 383

>gnl|CDD|232888 TIGR00233, trpS, tryptophanyl-tRNA synthetase

 Score =  206 bits (527), Expect = 3e-66
 Identities = 76/222 (34%), Positives = 117/222 (52%), Gaps = 23/222 (10%)

Query: 2   VKVAKCVTYNKVVGIFGFTGEDH-----IGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCL 56
             ++  VT+ ++  +  F  +       IG +S+P +QA                    L
Sbjct: 93  WLLSCQVTFGELKRMTQFKDKSQAENVPIGLLSYPVLQAADILLYQAD-----------L 141

Query: 57  IPCAIDQDPYFRMTRDVAPRIG------YHKPALIESSFFPALQGETG-KMSASDPNSAI 109
           +P  IDQD +  +TRD+A R        + KP  + S FFP L G +G KMS SDPNSAI
Sbjct: 142 VPVGIDQDQHLELTRDLAERFNKKFKNFFPKPESLISKFFPRLMGLSGKKMSKSDPNSAI 201

Query: 110 YVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKE 169
           ++TD+ K IK KI K A  GG+ ++  HR+      + +  +YLSFFL DD +L+ I + 
Sbjct: 202 FLTDTPKQIKKKIRKAATDGGRVTLFEHREKPGVPNLLVIYQYLSFFLIDDDKLKEIYEA 261

Query: 170 YGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFM 211
           Y +G +  GE K+ L +VL E ++  Q  RA + +E++D  +
Sbjct: 262 YKSGKLGYGECKKALIEVLQEFLKEIQERRAEIAEEILDKIL 303

This model represents tryptophanyl-tRNA synthetase. Some members of the family have a pfam00458 domain amino-terminal to the region described by this model [Protein synthesis, tRNA aminoacylation]. Length = 327

>gnl|CDD|237037 PRK12285, PRK12285, tryptophanyl-tRNA synthetase; Reviewed

 Score =  200 bits (512), Expect = 2e-63
 Identities = 81/214 (37%), Positives = 123/214 (57%), Gaps = 14/214 (6%)

Query: 2   VKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAI 61
            ++AK V ++++  I+GFTGE +IG + +P  QA        P L  G      L+P  I
Sbjct: 157 FELAKKVNFSELKAIYGFTGETNIGHIFYPATQAADIL---HPQLEEGP--KPTLVPVGI 211

Query: 62  DQDPYFRMTRDVAPRI----GYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKA 117
           DQDP+ R+TRD+A R+    G+ KP+     F P L G  GKMS+S P SAIY+TD  + 
Sbjct: 212 DQDPHIRLTRDIAERLHGGYGFIKPSSTYHKFMPGLTG--GKMSSSKPESAIYLTDDPET 269

Query: 118 IKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFL-EDDAELEHIKKEYGAGGML 176
           +K KI K A +GG+ ++E  RKLG   +  +  + L + L EDD EL+ I +E  +G +L
Sbjct: 270 VKKKIMK-ALTGGRATLEEQRKLGGEPDECVVYELLLYHLEEDDKELKEIYEECRSGELL 328

Query: 177 TGEVKQRLAKVLTELVERHQVARAAVTDEMVDAF 210
            GE K+  A+ + E ++ HQ  R     E+++ +
Sbjct: 329 CGECKKEAAEKIAEFLKEHQEKREEA-REILEKY 361

Length = 368

>gnl|CDD|173903 cd00806, TrpRS_core, catalytic core domain of tryptophanyl-tRNA synthetase

 Score =  190 bits (485), Expect = 2e-60
 Identities = 72/205 (35%), Positives = 101/205 (49%), Gaps = 28/205 (13%)

Query: 1   MVKVAKCVTYNKVVGIFGFT------GEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLR 54
              ++  VT+ ++  + GF          +IG +++P +QA                   
Sbjct: 90  AWLLSCVVTFGELERMTGFKDKSAQGESVNIGLLTYPVLQAADILLYKA----------- 138

Query: 55  CLIPCAIDQDPYFRMTRDVAPRIGYH------KPALIES--SFFPALQGETGKMSASDPN 106
           CL+P  IDQDP+  +TRD+A R          KPA + S  +F P LQG + KMS SDPN
Sbjct: 139 CLVPVGIDQDPHLELTRDIARRFNKLYGEIFPKPAALLSKGAFLPGLQGPSKKMSKSDPN 198

Query: 107 SAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHI 166
           +AI++TDS K IK KI K A  GG+     HR+ G    V   V+  S F  DD E    
Sbjct: 199 NAIFLTDSPKEIKKKIMKAATDGGR---TEHRRDGGGPGVSNLVEIYSAFFNDDDEELEE 255

Query: 167 KKEYGAGGMLTGEVKQRLAKVLTEL 191
             EY +GG+  GE K+ LA+ + E 
Sbjct: 256 IDEYRSGGLGYGECKKLLAEAIQEF 280

Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding. Length = 280

>gnl|CDD|223258 COG0180, TrpS, Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]

 Score =  155 bits (394), Expect = 2e-46
 Identities = 64/227 (28%), Positives = 103/227 (45%), Gaps = 32/227 (14%)

Query: 2   VKVAKCVTYNKVVGIFGFTGED-------HIGKVSFPPVQAVPSFPSSFPHLFSGKDHLR 54
             ++    + ++  +  F  +         IG +++P +QA          L+       
Sbjct: 98  WLLSCVTNFGELERMTQFKDKSAKKGESIPIGLLTYPVLQAADIL------LYQA----- 146

Query: 55  CLIPCAIDQDPYFRMTRDVAPRIGYH------KPALI--ESSFFPALQGETGKMSASDPN 106
            L+P   DQD +  +TRD+A R  +        P  +  + +  P L G  GKMS SDPN
Sbjct: 147 TLVPVGEDQDQHLELTRDIARRFNHLYGEVFPLPEALISKVARLPGLDGP-GKMSKSDPN 205

Query: 107 SAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHI 166
           SAI++ D  K I+ KI K A  G   ++  +RK G   EV    +  S F EDD+ LE I
Sbjct: 206 SAIFLLDDPKTIRKKIKKAATDG--PTLIEYRK-GGKPEVCNLFEIYSAFFEDDSILE-I 261

Query: 167 KKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAV 213
           + EY  G +  GE K+ LA+ + E ++  Q  R  + ++       +
Sbjct: 262 EAEYRGGELGCGECKKELAEAIQEFLKPIQERREELREDP-AYLDDI 307

Length = 314

>gnl|CDD|236286 PRK08560, PRK08560, tyrosyl-tRNA synthetase; Validated

 Score = 72.6 bits (179), Expect = 3e-15
 Identities = 28/67 (41%), Positives = 38/67 (56%), Gaps = 1/67 (1%)

Query: 61  IDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKN 120
           +DQ     + R+V P++GY KP  I +     L G   KMS S P SAI+V DS + I+ 
Sbjct: 176 MDQRKIHMLAREVLPKLGYKKPVCIHTPLLTGLDGGGIKMSKSKPGSAIFVHDSPEEIRR 235

Query: 121 KINKYAF 127
           KI K A+
Sbjct: 236 KIKK-AY 241

Length = 329

>gnl|CDD|216003 pfam00579, tRNA-synt_1b, tRNA synthetases class I (W and Y)

 Score = 71.2 bits (175), Expect = 7e-15
 Identities = 38/143 (26%), Positives = 61/143 (42%), Gaps = 8/143 (5%)

Query: 56  LIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETG--KMSASDPNSAIYVTD 113
           L P   DQ  +  + RD+A R              P L G  G  KMS S  NSAI++ D
Sbjct: 152 LQPGGSDQWGHIELGRDLARRFNKKVFKKPVGLTNPLLTGLDGGKKMSKSAGNSAIFLDD 211

Query: 114 SAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPV-KYLSFFLEDDA--ELEHIKKEY 170
             +++  KI + A++      E+ + L    E+     + L  FL      E E +    
Sbjct: 212 EKESVYKKI-QKAYTDPDR--EVRKDLKLFTELSNEEIEILEAFLGKGPKREAEELLARE 268

Query: 171 GAGGMLTGEVKQRLAKVLTELVE 193
             G +  G++K+  A+ +  L+E
Sbjct: 269 VTGLVHGGDLKKAAAEAVNALLE 291

Length = 291

>gnl|CDD|234866 PRK00927, PRK00927, tryptophanyl-tRNA synthetase; Reviewed

 Score = 65.5 bits (161), Expect = 9e-13
 Identities = 46/149 (30%), Positives = 66/149 (44%), Gaps = 14/149 (9%)

Query: 56  LIPCAIDQDPYFRMTRDVAPRIGYH------KP-ALI--ESSFFPALQGETGKMSASDPN 106
           L+P   DQ  +  +TRD+A R           P  LI    +    L G T KMS SDPN
Sbjct: 141 LVPVGEDQKQHLELTRDIARRFNNLYGEVFPVPEPLIPKVGARVMGLDGPTKKMSKSDPN 200

Query: 107 --SAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELE 164
             + I + D  K I  KI K A +  +   E+   L    EV   +   S    +   +E
Sbjct: 201 DNNTINLLDDPKTIAKKIKK-AVTDSERLREIRYDLPNKPEVSNLLTIYSALSGE--SIE 257

Query: 165 HIKKEYGAGGMLTGEVKQRLAKVLTELVE 193
            ++ EY AGG   G+ K+ LA+ + E + 
Sbjct: 258 ELEAEYEAGGKGYGDFKKDLAEAVVEFLA 286

Length = 333

>gnl|CDD|183400 PRK12282, PRK12282, tryptophanyl-tRNA synthetase II; Reviewed

 Score = 60.6 bits (148), Expect = 6e-11
 Identities = 44/147 (29%), Positives = 68/147 (46%), Gaps = 15/147 (10%)

Query: 56  LIPCAIDQDPYFRMTRDVAPRIG--YHKPALIE-------SSFFPALQGETGKMSASDPN 106
           L+P   DQ P    TR++  R    Y    L+E       +   P L G+  KMS S  N
Sbjct: 145 LVPVGDDQLPMIEQTREIVRRFNSLYGTDVLVEPEALLPEAGRLPGLDGK-AKMSKSLGN 203

Query: 107 SAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHI 166
            AIY++D A  IK K+    ++   +   +  +    +E ++   YL  F  D AE+  +
Sbjct: 204 -AIYLSDDADTIKKKVMS-MYT---DPNHIRVEDPGKVEGNVVFTYLDAFDPDKAEVAEL 258

Query: 167 KKEYGAGGMLTGEVKQRLAKVLTELVE 193
           K  Y  GG+   + K+ L +VL EL+ 
Sbjct: 259 KAHYQRGGLGDVKCKRYLEEVLQELLA 285

Length = 333

>gnl|CDD|173902 cd00805, TyrRS_core, catalytic core domain of tyrosinyl-tRNA synthetase

 Score = 48.8 bits (117), Expect = 4e-07
 Identities = 34/122 (27%), Positives = 53/122 (43%), Gaps = 22/122 (18%)

Query: 71  RDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSA-IYVTDSAKAIKNKINKYAFSG 129
           RD+  ++GY K   + +     L G  GKMS S+ N+    V DS   +  KI   AF  
Sbjct: 169 RDLIRKLGYKKVVGLTTPLLTGLDG--GKMSKSEGNAIWDPVLDSPYDVYQKIRN-AFDP 225

Query: 130 GQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLT 189
                               +K  +F   D  E+E +++E+  G  L  + K+ LA+ LT
Sbjct: 226 DVLEF---------------LKLFTFL--DYEEIEELEEEHAEGP-LPRDAKKALAEELT 267

Query: 190 EL 191
           +L
Sbjct: 268 KL 269

Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding. Length = 269

>gnl|CDD|240282 PTZ00126, PTZ00126, tyrosyl-tRNA synthetase; Provisional

 Score = 47.4 bits (113), Expect = 2e-06
 Identities = 19/45 (42%), Positives = 25/45 (55%)

Query: 80  HKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINK 124
            KP ++     P L     KMS SDPNSAI++ DS + +  KI K
Sbjct: 238 KKPIILSHHMLPGLLEGQEKMSKSDPNSAIFMEDSEEDVNRKIKK 282

Length = 383

>gnl|CDD|223240 COG0162, TyrS, Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]

 Score = 37.2 bits (87), Expect = 0.004
 Identities = 30/150 (20%), Positives = 47/150 (31%), Gaps = 36/150 (24%)

Query: 69  MTRDVAPRIGYHKPALIESSFFPALQGE-------TGKMSASDPNSAIYVTDSAKAIKNK 121
             RD+  R+G  K   + +     L G+             S+  S          I++ 
Sbjct: 196 AGRDLIRRLGQKKVVGLTTPLLTGLDGKKMGKSEGGAVWLDSEKTSPYDFYQYWMNIEDA 255

Query: 122 INKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLE-DDAELEHIKKEYGAGGMLTGEV 180
             K                          ++L         E+E I+K    G     E 
Sbjct: 256 DVK--------------------------RFLKLLTFLSLEEIEEIEKYVLKGPEPR-EA 288

Query: 181 KQRLAKVLTELVERHQVARAAVTDEMVDAF 210
           K+ LAK +T+LV   + A AA  +E    F
Sbjct: 289 KKLLAKEVTKLVHGEEAAEAAE-EEFEKLF 317

Length = 401

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	221
PLN02486	383	aminoacyl-tRNA ligase	100.0
COG0180	314	TrpS Tryptophanyl-tRNA synthetase [Translation, ri	100.0
KOG2145	397	consensus Cytoplasmic tryptophanyl-tRNA synthetase	100.0
PRK12285	368	tryptophanyl-tRNA synthetase; Reviewed	100.0
PRK00927	333	tryptophanyl-tRNA synthetase; Reviewed	100.0
PRK12282	333	tryptophanyl-tRNA synthetase II; Reviewed	100.0
PLN02886	389	aminoacyl-tRNA ligase	100.0
PRK12556	332	tryptophanyl-tRNA synthetase; Provisional	100.0
PRK12284	431	tryptophanyl-tRNA synthetase; Reviewed	100.0
TIGR00233	328	trpS tryptophanyl-tRNA synthetase. This model repr	100.0
PRK12283	398	tryptophanyl-tRNA synthetase; Reviewed	100.0
KOG2713	347	consensus Mitochondrial tryptophanyl-tRNA syntheta	100.0
PRK08560	329	tyrosyl-tRNA synthetase; Validated	100.0
cd00806	280	TrpRS_core catalytic core domain of tryptophanyl-t	100.0
PTZ00126	383	tyrosyl-tRNA synthetase; Provisional	100.0
PTZ00348	682	tyrosyl-tRNA synthetase; Provisional	100.0
PF00579	292	tRNA-synt_1b: tRNA synthetases class I (W and Y);	100.0
cd00805	269	TyrRS_core catalytic core domain of tyrosinyl-tRNA	100.0
KOG2144	360	consensus Tyrosyl-tRNA synthetase, cytoplasmic [Tr	100.0
cd00395	273	Tyr_Trp_RS_core catalytic core domain of tyrosinyl	100.0
PTZ00348	682	tyrosyl-tRNA synthetase; Provisional	100.0
PRK05912	408	tyrosyl-tRNA synthetase; Validated	100.0
PRK13354	410	tyrosyl-tRNA synthetase; Provisional	99.97
TIGR00234	377	tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA sy	99.9
COG0162	401	TyrS Tyrosyl-tRNA synthetase [Translation, ribosom	99.83
cd00802	143	class_I_aaRS_core catalytic core domain of class I	98.96
KOG2623	467	consensus Tyrosyl-tRNA synthetase [Translation, ri	98.84
cd00808	239	GluRS_core catalytic core domain of discriminating	98.37
PRK00750	510	lysK lysyl-tRNA synthetase; Reviewed	97.83
cd00418	230	GlxRS_core catalytic core domain of glutamyl-tRNA	97.15
cd00674	353	LysRS_core_class_I catalytic core domain of class	97.01
COG0162	401	TyrS Tyrosyl-tRNA synthetase [Translation, ribosom	96.54
PRK01406	476	gltX glutamyl-tRNA synthetase; Reviewed	95.52
cd00668	312	Ile_Leu_Val_MetRS_core catalytic core domain of is	94.9
TIGR00464	470	gltX_bact glutamyl-tRNA synthetase, bacterial fami	94.87
PRK01611	507	argS arginyl-tRNA synthetase; Reviewed	94.82
PRK05743	912	ileS isoleucyl-tRNA synthetase; Reviewed	94.54
PRK14895	513	gltX glutamyl-tRNA synthetase; Provisional	94.28
cd00817	382	ValRS_core catalytic core domain of valyl-tRNA syn	94.09
cd00818	338	IleRS_core catalytic core domain of isoleucyl-tRNA	93.79
cd00671	212	ArgRS_core catalytic core domain of arginyl-tRNA s	93.5
cd00812	314	LeuRS_core catalytic core domain of leucyl-tRNA sy	93.41
TIGR00456	566	argS arginyl-tRNA synthetase. This model recognize	92.97
TIGR00392	861	ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA	92.59
PRK14900	1052	valS valyl-tRNA synthetase; Provisional	92.58
PRK04156	567	gltX glutamyl-tRNA synthetase; Provisional	92.43
PRK13804	961	ileS isoleucyl-tRNA synthetase; Provisional	92.27
PLN02286	576	arginine-tRNA ligase	92.17
TIGR00467	515	lysS_arch lysyl-tRNA synthetase, archaeal and spir	92.15
PRK05729	874	valS valyl-tRNA synthetase; Reviewed	91.99
PRK11893	511	methionyl-tRNA synthetase; Reviewed	91.85
PTZ00419	995	valyl-tRNA synthetase-like protein; Provisional	91.55
PRK13208	800	valS valyl-tRNA synthetase; Reviewed	91.52
PRK00260	463	cysS cysteinyl-tRNA synthetase; Validated	91.43
PLN02381	1066	valyl-tRNA synthetase	91.37
PLN02843	974	isoleucyl-tRNA synthetase	91.34
PF00133	601	tRNA-synt_1: tRNA synthetases class I (I, L, M and	91.28
PRK00133	673	metG methionyl-tRNA synthetase; Reviewed	90.88
TIGR00435	465	cysS cysteinyl-tRNA synthetase. This model finds t	90.71
PLN02943	958	aminoacyl-tRNA ligase	90.48
TIGR03838	272	queuosine_YadB glutamyl-queuosine tRNA(Asp) synthe	90.2
PRK12300	897	leuS leucyl-tRNA synthetase; Reviewed	90.08
PLN02959	1084	aminoacyl-tRNA ligase	90.02
TIGR00422	861	valS valyl-tRNA synthetase. The valyl-tRNA synthet	89.89
PRK05710	299	glutamyl-Q tRNA(Asp) synthetase; Reviewed	89.79
PRK06039	975	ileS isoleucyl-tRNA synthetase; Reviewed	89.78
PRK12418	384	cysteinyl-tRNA synthetase; Provisional	89.72
TIGR00395	938	leuS_arch leucyl-tRNA synthetase, archaeal and cyt	89.71
PRK12267	648	methionyl-tRNA synthetase; Reviewed	89.71
cd00814	319	MetRS_core catalytic core domain of methioninyl-tR	88.98
cd00672	213	CysRS_core catalytic core domain of cysteinyl tRNA	88.8
TIGR00396	842	leuS_bact leucyl-tRNA synthetase, eubacterial and	88.52
COG0008	472	GlnS Glutamyl- and glutaminyl-tRNA synthetases [Tr	88.37
PF01921	360	tRNA-synt_1f: tRNA synthetases class I (K); InterP	88.22
TIGR03447	411	mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-	87.93
PRK12268	556	methionyl-tRNA synthetase; Reviewed	87.48
PLN02563	963	aminoacyl-tRNA ligase	86.84
PLN02882	1159	aminoacyl-tRNA ligase	86.64
KOG0432	995	consensus Valyl-tRNA synthetase [Translation, ribo	86.53
COG0018	577	ArgS Arginyl-tRNA synthetase [Translation, ribosom	86.36
COG1384	521	LysS Lysyl-tRNA synthetase (class I) [Translation,	85.71
PLN02224	616	methionine-tRNA ligase	85.16
PTZ00402	601	glutamyl-tRNA synthetase; Provisional	84.75
TIGR00398	530	metG methionyl-tRNA synthetase. The methionyl-tRNA	84.21
PRK00390	805	leuS leucyl-tRNA synthetase; Validated	84.16
PRK12451	562	arginyl-tRNA synthetase; Reviewed	83.52
PTZ00427	1205	isoleucine-tRNA ligase, putative; Provisional	83.37
COG0060	933	IleS Isoleucyl-tRNA synthetase [Translation, ribos	81.15
PLN03233	523	putative glutamate-tRNA ligase; Provisional	80.93
COG0495	814	LeuS Leucyl-tRNA synthetase [Translation, ribosoma	80.62

>PLN02486 aminoacyl-tRNA ligase

Probab=100.00  E-value=7.8e-58  Score=415.67  Aligned_cols=216  Identities=85%  Similarity=1.326  Sum_probs=204.9

Q ss_pred             ccccccccHHHHHHhhCCCCCCcccccchhhhhccCCCCCCCCcccccCCCCcccccCCCCchHHHHHHHHHHHHhCCCC
Q 027582            2 VKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHK   81 (221)
Q Consensus         2 ~~l~r~~t~k~~~~~~g~~~~~~~g~l~YP~lqaa~~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~~laR~ia~~~n~~~   81 (221)
                      ++|+|++|++++++++||.++.++|+++||+|||||+|+.+||-++....+++|+||||+||+||++|||++|+|||+.+
T Consensus       168 ~~l~r~~t~~~~~~~~gf~~~~~ig~~~YP~lQaadi~~~~~~~l~~~~~~~~~lVPvG~DQd~~~~ltRdia~r~~~~k  247 (383)
T PLN02486        168 VKIAKCVTLNQVRGIFGFSGEDNIGKISFPAVQAAPSFPSSFPHLFGGKDKLRCLIPCAIDQDPYFRMTRDVAPRLGYYK  247 (383)
T ss_pred             HHHHhhCcHHHHHHhhCcCCCCCchhhhhHHHHHhhhhhhccHHHhCCCcCCcceeecccchHHHHHHHHHHHHHhCCCC
Confidence            57899999999999999988899999999999999999999988876666688999999999999999999999999999


Q ss_pred             ccccccCcccCCCCCCCCcCCCCCCCceecCCCHHHHHHHHhhccccCCcchhhhhhhcCCCccchhHHHHHhhhcCChH
Q 027582           82 PALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDA  161 (221)
Q Consensus        82 p~~l~~~~lp~L~g~~~KMSkS~~~s~I~L~D~p~~I~~KI~k~A~td~~~~~~~~~~~~~~p~v~~~~~~l~~~~~~~~  161 (221)
                      |.+++++++|||+|+++|||||++||+|+|+|+|++|++||++|||||++.+++++++.|++|+++++|+||.+|.++++
T Consensus       248 p~~~~~~~lp~L~g~~~KMSkS~~nsaI~L~D~p~~i~~KI~k~A~t~~~~t~~~~~~~gg~p~v~~~~~~l~~f~~dd~  327 (383)
T PLN02486        248 PALIESRFFPALQGESGKMSASDPNSAIYVTDTPKEIKNKINKYAFSGGQDTVEEHRELGANLEVDIPWKYLNFFLEDDA  327 (383)
T ss_pred             cceeccccccCCCCCCCcCcCcCCCCeeeccCCHHHHHHHHhcCCCCCCCCcccccccCCCCCccchHHHHHHHHcCCch
Confidence            99999999999999888999999999999999999999999999999999999999999999999999999999986678


Q ss_pred             hHHHHHHHHhcCCCChHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhcCCCC
Q 027582          162 ELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPLP  217 (221)
Q Consensus       162 ~~eel~~~y~~g~~~~~~lK~~lae~l~~~l~pire~~~~~~~~~l~~il~~~~~~  217 (221)
                      ++++++++|++|+++|++||+.|++.|+++|+|+|||+++++++.|++++..++++
T Consensus       328 ~~eei~~~y~~G~l~~ge~K~~lae~i~~~l~~~qerr~~~~~~~~~~~~~~~~~~  383 (383)
T PLN02486        328 ELERIKKEYGSGRMLTGEVKKRLIEVLTEIVERHQRARAAVTDEMVDAFMAVRPLP  383 (383)
T ss_pred             HHHHHHHHhccCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCC
Confidence            89999999999999999999999999999999999999999999999999998763

>COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=1.5e-56  Score=395.60  Aligned_cols=196  Identities=32%  Similarity=0.492  Sum_probs=178.0

Q ss_pred             ccccccccHHHHHHhhCCCCCCcccccchhhhhccCCCCCCCCcccccCCCCcccccCCCCchHHHHHHHHHHHHhC---
Q 027582            2 VKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIG---   78 (221)
Q Consensus         2 ~~l~r~~t~k~~~~~~g~~~~~~~g~l~YP~lqaa~~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~~laR~ia~~~n---   78 (221)
                      ++|+|+++||++....+  +++++|++.||+||||        |||+|++   |+||||.||+||+|||||||+|||   
T Consensus       107 gel~r~~~fKdk~~~~~--~~~~~Gl~~YPvlqAA--------DILl~~a---~~VPVG~DQ~qHleLtRDiA~rfn~~y  173 (314)
T COG0180         107 GELERMTQFKDKSAKKG--ESIPIGLLTYPVLQAA--------DILLYQA---TLVPVGEDQDQHLELTRDIARRFNHLY  173 (314)
T ss_pred             HHHHhhcCcchhhhccc--ccccccchhccHHHHH--------HhhhccC---CeeccCCCchHHHHHHHHHHHHHHhhc
Confidence            57888888888887664  4789999999999999        9999999   789999999999999999999999   


Q ss_pred             ---CCCccccccC--cccCCCCCCCCcCCCCCCCceecCCCHHHHHHHHhhccccCCcchhhhhhhcCCCccchhHHHHH
Q 027582           79 ---YHKPALIESS--FFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYL  153 (221)
Q Consensus        79 ---~~~p~~l~~~--~lp~L~g~~~KMSkS~~~s~I~L~D~p~~I~~KI~k~A~td~~~~~~~~~~~~~~p~v~~~~~~l  153 (221)
                         +++|..+.+.  ++|||+|+ +|||||++||+|+|+|+|++|++||++ |+||+ .+..++.+ +|+|++||+|+||
T Consensus       174 ~~~f~~P~~~~~~~~~i~gL~g~-~KMSkS~~ns~I~L~D~~~~i~kKI~~-~~td~-~~~~~~~~-~g~Pe~~~l~~~~  249 (314)
T COG0180         174 GEVFPLPEALISKVARLPGLDGP-GKMSKSDPNSAIFLLDDPKTIRKKIKK-AATDG-PTLIEYRK-GGKPEVCNLFEIY  249 (314)
T ss_pred             CCccCCccccccCCCcccCCCCC-CcccccCCCCeeeccCCHHHHHHHHHH-hccCC-CCccccCC-CCCCCcchHHHHH
Confidence               6899888876  99999998 899999999999999999999999999 99999 34444444 9999999999999


Q ss_pred             hhhcCChHhHHHHHHHHhcCCCChHHHHHHHHHHHHHHhHHHHHHHHHHhHH--HHHHHHhcCC
Q 027582          154 SFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDE--MVDAFMAVRP  215 (221)
Q Consensus       154 ~~~~~~~~~~eel~~~y~~g~~~~~~lK~~lae~l~~~l~pire~~~~~~~~--~l~~il~~~~  215 (221)
                      .+|.. +++.+++++.|++|+++|++||+.|++.|+++|+||||||++++++  +++++|..+.
T Consensus       250 ~~~~~-~~~~~ei~~~~~~G~~~~ge~K~~lae~i~~fL~~iqer~~~~~~~~~~l~~il~~g~  312 (314)
T COG0180         250 SAFFE-DDSILEIEAEYRGGELGCGECKKELAEAIQEFLKPIQERREELREDPAYLDDILRKGA  312 (314)
T ss_pred             HHhcC-CCcHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHhccC
Confidence            99974 6677799999999999999999999999999999999999999887  7999998764

>KOG2145 consensus Cytoplasmic tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=1.1e-54  Score=375.04  Aligned_cols=218  Identities=66%  Similarity=1.103  Sum_probs=212.8

Q ss_pred             CccccccccHHHHHHhhCCCCCCcccccchhhhhccCCCCCCCCcccccCCCCcccccCCCCchHHHHHHHHHHHHhCCC
Q 027582            1 MVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYH   80 (221)
Q Consensus         1 ~~~l~r~~t~k~~~~~~g~~~~~~~g~l~YP~lqaa~~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~~laR~ia~~~n~~   80 (221)
                      ++++++.+|++++++.+||+++.++|.+.+|..||||||++|||.|+....|++|++|+.+||+|++++|||+|+|++++
T Consensus       180 ivki~k~vt~nqa~~iFGF~~sd~igk~~Fpa~qaap~fssSFp~if~~~~~~~CLiPcAiDQDPyFRmtRDvA~rlg~~  259 (397)
T KOG2145|consen  180 IVKISKCVTLNQAKAIFGFTDSDCIGKIGFPAIQAAPSFSSSFPFIFGGRDDIPCLIPCAIDQDPYFRMTRDVAPRLGYP  259 (397)
T ss_pred             HHHHhheechhhheeeeccCCccccccccCchhhhcccccccchhhcCCCcCCceeceeeccCChHHHhhhhhhhhhCCC
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccccccCcccCCCCCCCCcCCCCCCCceecCCCHHHHHHHHhhccccCCcchhhhhhhcCCCccchhHHHHHhhhcCCh
Q 027582           81 KPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDD  160 (221)
Q Consensus        81 ~p~~l~~~~lp~L~g~~~KMSkS~~~s~I~L~D~p~~I~~KI~k~A~td~~~~~~~~~~~~~~p~v~~~~~~l~~~~~~~  160 (221)
                      +|+.+++.++|.|+|.+.|||.|+|||+|||+|++++|++||.+|||+++++++++|++.||||+|++.|+||++|.+++
T Consensus       260 Kpali~stffpaLqG~~~KMSASdpns~Ifltdt~~qIk~KI~~~afSGGr~tiEeHRe~GGn~dVDV~~~YLsFFldDD  339 (397)
T KOG2145|consen  260 KPALIHSTFFPALQGAQTKMSASDPNSAIFLTDTAKQIKNKINKYAFSGGRDTIEEHRELGGNPDVDVSFQYLSFFLDDD  339 (397)
T ss_pred             CcceeehhhchhhhCcccccccCCCCceEEecCcHHHHHHHHHHhhccCCcchHHHHHHhCCCCcceehHHHHHHHhccH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999889


Q ss_pred             HhHHHHHHHHhcCCCChHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhcCCCCCCC
Q 027582          161 AELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPLPNMF  220 (221)
Q Consensus       161 ~~~eel~~~y~~g~~~~~~lK~~lae~l~~~l~pire~~~~~~~~~l~~il~~~~~~~~~  220 (221)
                      ..+|++..+|.+|.|..|++|+.+.+.|.++++.+|+++++++++.|++++..+++  .|
T Consensus       340 ~kLeq~r~~Y~~G~mltgEmKk~~ievLq~~V~~hQa~Rk~Vtde~ld~Fm~~r~l--~~  397 (397)
T KOG2145|consen  340 DKLEQIRKDYTSGEMLTGEMKKLCIEVLQEFVSRHQAARKEVTDETLDAFMDPRKL--SF  397 (397)
T ss_pred             HHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhCcccC--CC
Confidence            99999999999999999999999999999999999999999999999999999855  55

>PRK12285 tryptophanyl-tRNA synthetase; Reviewed

Probab=100.00  E-value=4.2e-53  Score=383.55  Aligned_cols=199  Identities=39%  Similarity=0.699  Sum_probs=186.4

Q ss_pred             ccccccccHHHHHHhhCCCCCCcccccchhhhhccCCCCCCCCcccc------cCCCCcccccCCCCchHHHHHHHHHHH
Q 027582            2 VKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFS------GKDHLRCLIPCAIDQDPYFRMTRDVAP   75 (221)
Q Consensus         2 ~~l~r~~t~k~~~~~~g~~~~~~~g~l~YP~lqaa~~~~~~~~Dil~------~~ad~~~~vpvG~DQ~~h~~laR~ia~   75 (221)
                      ..|++.+|++++++.+||+++.|+|+++||+||||        |||.      +++   |+||||+||+||+||||++|+
T Consensus       157 ~~l~~~~t~~~l~r~~~f~~~~~~g~~~YP~lQaA--------Dil~~~~~~~~~~---~lvPvG~DQ~~h~~ltRdiA~  225 (368)
T PRK12285        157 FELAKKVNFSELKAIYGFTGETNIGHIFYPATQAA--------DILHPQLEEGPKP---TLVPVGIDQDPHIRLTRDIAE  225 (368)
T ss_pred             HHHHhhCcHHHHHHhhCCCCCCchhhhhhhHHHHH--------HHHhhcccccCCc---eEEEeccchHHHHHHHHHHHH
Confidence            35789999999999999988899999999999999        8877      666   789999999999999999999


Q ss_pred             Hh----CCCCccccccCcccCCCCCCCCcCCCCCCCceecCCCHHHHHHHHhhccccCCcchhhhhhhcCCCccchhHHH
Q 027582           76 RI----GYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVK  151 (221)
Q Consensus        76 ~~----n~~~p~~l~~~~lp~L~g~~~KMSkS~~~s~I~L~D~p~~I~~KI~k~A~td~~~~~~~~~~~~~~p~v~~~~~  151 (221)
                      ||    |+++|.+++++++|||+|  +|||||+++|+|+|+|+|++|++||++ ||||++.+.+++++.++||+++++++
T Consensus       226 r~n~~~gf~~P~~l~~~~lpgL~G--~KMSkS~~~s~I~L~D~p~~I~kKI~k-A~Td~~~t~~~~~~~~g~p~~~~v~~  302 (368)
T PRK12285        226 RLHGGYGFIKPSSTYHKFMPGLTG--GKMSSSKPESAIYLTDDPETVKKKIMK-ALTGGRATLEEQRKLGGEPDECVVYE  302 (368)
T ss_pred             HHhhhcCCCCchhHhhhcccCCCC--CcCCCCCCCCeeeccCCHHHHHHHHHh-CcCCCCcccccccccCCCCCcchHHH
Confidence            99    789999999999999999  699999999999999999999999999 99999998888899999999999999


Q ss_pred             HHhhhc-CChHhHHHHHHHHhcCCCChHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhcCC
Q 027582          152 YLSFFL-EDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRP  215 (221)
Q Consensus       152 ~l~~~~-~~~~~~eel~~~y~~g~~~~~~lK~~lae~l~~~l~pire~~~~~~~~~l~~il~~~~  215 (221)
                      |+++|. .+++++++++++|++|+++|++||+.|++.|+++|+|+|+|++++++ .|++++...+
T Consensus       303 ~l~~~~~~~d~~~eei~~~y~~g~~~~g~~K~~lae~i~~~l~~~~er~~~~~~-~~~~~~~~~~  366 (368)
T PRK12285        303 LLLYHLEEDDKELKEIYEECRSGELLCGECKKEAAEKIAEFLKEHQEKREEARE-ILEKYLYDGK  366 (368)
T ss_pred             HHHHHhcCCCccHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhcccc
Confidence            999987 46789999999999999999999999999999999999999999998 8888877653

>PRK00927 tryptophanyl-tRNA synthetase; Reviewed

Probab=100.00  E-value=2.3e-53  Score=381.60  Aligned_cols=198  Identities=25%  Similarity=0.352  Sum_probs=180.9

Q ss_pred             ccccccccHHHHHHhhCCCCCCcccccchhhhhccCCCCCCCCcccccCCCCcccccCCCCchHHHHHHHHHHHHhCC--
Q 027582            2 VKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGY--   79 (221)
Q Consensus         2 ~~l~r~~t~k~~~~~~g~~~~~~~g~l~YP~lqaa~~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~~laR~ia~~~n~--   79 (221)
                      .+|+|+++|+++.+..  .++.++|+|+||+||||        |||++++   |+||||+||+||+||||+||+|||+  
T Consensus       100 ~~l~r~~~~k~~~~~~--~~~~~~g~~~YP~lQaa--------Dil~~~~---divpvG~DQ~~h~elaRdia~~~n~~~  166 (333)
T PRK00927        100 GELERMTQFKDKSAKQ--KENVSAGLFTYPVLMAA--------DILLYKA---DLVPVGEDQKQHLELTRDIARRFNNLY  166 (333)
T ss_pred             HHHHhhhhHHHHHhcc--CCCCCcHhhhcHHHHHH--------HHHhcCC---CEEeeccchHHHHHHHHHHHHHhhhhc
Confidence            5788999999886542  46789999999999999        9999999   5799999999999999999999994  


Q ss_pred             ----CCccccc---cCcccCCCCCCCCcCCCCCC--CceecCCCHHHHHHHHhhccccCCcchhhhhhhcCCCccchhHH
Q 027582           80 ----HKPALIE---SSFFPALQGETGKMSASDPN--SAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPV  150 (221)
Q Consensus        80 ----~~p~~l~---~~~lp~L~g~~~KMSkS~~~--s~I~L~D~p~~I~~KI~k~A~td~~~~~~~~~~~~~~p~v~~~~  150 (221)
                          ++|..++   +++||||+|+++|||||+++  |+|+|+|+|++|++||++ |+||+..+.+++++.+++|+++|++
T Consensus       167 ~~~f~~P~~i~~~~~~~l~gL~g~~~KMSKS~~~~~~~I~l~D~~~~I~~KI~~-a~td~~~~~~~~~~~~~~p~~~~l~  245 (333)
T PRK00927        167 GEVFPVPEPLIPKVGARVMGLDGPTKKMSKSDPNDNNTINLLDDPKTIAKKIKK-AVTDSERLREIRYDLPNKPEVSNLL  245 (333)
T ss_pred             cccCCCChhhhccccccccCCCCCCCCCCCCCCCCCCeEEeeCCHHHHHHHHHh-CCCCCCcccccccCCCCCCccccHH
Confidence                5777665   38999999987799999986  899999999999999999 9999988777889999999999999


Q ss_pred             HHHhhhcCChHhHHHHHHHHhcCCCChHHHHHHHHHHHHHHhHHHHHHHHHHhHH--HHHHHHhcCC
Q 027582          151 KYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDE--MVDAFMAVRP  215 (221)
Q Consensus       151 ~~l~~~~~~~~~~eel~~~y~~g~~~~~~lK~~lae~l~~~l~pire~~~~~~~~--~l~~il~~~~  215 (221)
                      +|+++|+  +.++++++++|.+|+++|++||+.||+.|+++|+|+|+||+++++|  +|+++|..+.
T Consensus       246 ~~~~~~~--~~~~eel~~~~~~g~~~~~~lK~~la~~i~~~l~pire~~~~~~~~~~~~~~il~~G~  310 (333)
T PRK00927        246 TIYSALS--GESIEELEAEYEAGGKGYGDFKKDLAEAVVEFLAPIRERYEELLADPAYLDEILAEGA  310 (333)
T ss_pred             HHHHHhC--CCCHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHH
Confidence            9999995  6789999999999999999999999999999999999999999976  8999998764

>PRK12282 tryptophanyl-tRNA synthetase II; Reviewed

Probab=100.00  E-value=4e-52  Score=373.27  Aligned_cols=197  Identities=27%  Similarity=0.404  Sum_probs=176.8

Q ss_pred             ccccccccHHHHHHhhCCCCCCcccccchhhhhccCCCCCCCCcccccCCCCcccccCCCCchHHHHHHHHHHHHhCC--
Q 027582            2 VKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGY--   79 (221)
Q Consensus         2 ~~l~r~~t~k~~~~~~g~~~~~~~g~l~YP~lqaa~~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~~laR~ia~~~n~--   79 (221)
                      ++++|++|+|++....|+.++.++|+++||+||||        |||+|++   |+||||+||+||+||||++|+|||+  
T Consensus       102 ~~l~r~~~~k~~~~~~~~~~~~~~g~l~YP~lqaa--------DIl~~~~---d~vpvG~DQ~~h~~laRdiA~~~n~~~  170 (333)
T PRK12282        102 ARLERNPTVKTEIAQKGFGRSIPAGFLTYPVSQAA--------DITAFKA---TLVPVGDDQLPMIEQTREIVRRFNSLY  170 (333)
T ss_pred             HHHhhchHHHHHHhccCCCCCCcchhhcchHHHHH--------HHHhhCC---CEEEeccccHHHHHHHHHHHHHHhhhc
Confidence            57889999999877766667889999999999999        9999999   5799999999999999999999993  


Q ss_pred             CCcccc-------ccCcccCCCCCCCCcCCCCCCCceecCCCHHHHHHHHhhccccCCcchhhhhhhcCCCccchhHHHH
Q 027582           80 HKPALI-------ESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKY  152 (221)
Q Consensus        80 ~~p~~l-------~~~~lp~L~g~~~KMSkS~~~s~I~L~D~p~~I~~KI~k~A~td~~~~~~~~~~~~~~p~v~~~~~~  152 (221)
                      .+|.++       ++++||||+|+ +|||||+++ +|+|+|+|++|++||++ |+||+..   .+++++++|+++|+++|
T Consensus       171 ~~~~~~~p~~~~~~~~~i~~L~g~-~KMSKS~~~-~I~L~D~pe~I~kKI~~-A~td~~~---~~~~~~~~~~~~~l~~~  244 (333)
T PRK12282        171 GTDVLVEPEALLPEAGRLPGLDGK-AKMSKSLGN-AIYLSDDADTIKKKVMS-MYTDPNH---IRVEDPGKVEGNVVFTY  244 (333)
T ss_pred             CCccccCchhcccCCCcccCCCCC-CcCCCCCCC-eeeeeCCHHHHHHHHHh-CcCCCCC---ccCCCCCCCCcChHHHH
Confidence            333322       46899999985 799999964 99999999999999999 9999852   45788999999999999


Q ss_pred             HhhhcCChHhHHHHHHHHhcCCCChHHHHHHHHHHHHHHhHHHHHHHHHHhHH--HHHHHHhcCC
Q 027582          153 LSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDE--MVDAFMAVRP  215 (221)
Q Consensus       153 l~~~~~~~~~~eel~~~y~~g~~~~~~lK~~lae~l~~~l~pire~~~~~~~~--~l~~il~~~~  215 (221)
                      +++|.++++++++++++|.+|++++++||+.|++.|+++|+|+|+||++++++  +|+++|..+.
T Consensus       245 ~~~f~~~~~~~e~l~~~y~~g~~~~~dlK~~lae~i~~~l~pirer~~~~~~~~~~~~~vl~~G~  309 (333)
T PRK12282        245 LDAFDPDKAEVAELKAHYQRGGLGDVKCKRYLEEVLQELLAPIRERRAEFAKDPGYVLEILKAGS  309 (333)
T ss_pred             HHHhCCCCchHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHH
Confidence            99997567899999999999999999999999999999999999999999876  8999998764

>PLN02886 aminoacyl-tRNA ligase

Probab=100.00  E-value=1e-51  Score=375.02  Aligned_cols=196  Identities=22%  Similarity=0.299  Sum_probs=174.6

Q ss_pred             CccccccccHHHHHHhhCCCCCCcccccchhhhhccCCCCCCCCcccccCCCCcccccCCCCchHHHHHHHHHHHHhCC-
Q 027582            1 MVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGY-   79 (221)
Q Consensus         1 ~~~l~r~~t~k~~~~~~g~~~~~~~g~l~YP~lqaa~~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~~laR~ia~~~n~-   79 (221)
                      +++|+|++|||++.+..| .++.++|+|+||+||||        |||+|++|   +||||+||+||+||||+||+|||+ 
T Consensus       144 ~g~L~R~~q~K~k~~~~~-~~~~~~gll~YPvLqAA--------DILl~~a~---~VPVG~DQ~qH~eLtRdiA~rfN~~  211 (389)
T PLN02886        144 IGWLNKMIQFKEKSRKAG-DENVGVGLLTYPVLMAS--------DILLYQAD---LVPVGEDQKQHLELTRDIAERVNNL  211 (389)
T ss_pred             HHHHHhcchHHHHHHhcC-CCCCChHhhhChHHHHh--------hhhhcCCC---eEEEccchHHHHHHHHHHHHHHhhh
Confidence            368999999999988765 35689999999999999        99999995   799999999999999999999985 


Q ss_pred             -----------------CCccccc---cCcccCCCCCCCCcCCCCCC--CceecCCCHHHHHHHHhhccccCCcchhhhh
Q 027582           80 -----------------HKPALIE---SSFFPALQGETGKMSASDPN--SAIYVTDSAKAIKNKINKYAFSGGQESVELH  137 (221)
Q Consensus        80 -----------------~~p~~l~---~~~lp~L~g~~~KMSkS~~~--s~I~L~D~p~~I~~KI~k~A~td~~~~~~~~  137 (221)
                                       +.|..++   +++||||+|+++|||||+++  |+|+|+|+|++|++||++ |+||+...++  
T Consensus       212 y~~~~~~~~~~~~~~~f~~P~~l~~~~~~ri~~L~~g~~KMSKS~p~~~s~I~L~Ds~e~I~kKI~~-a~TD~~~~i~--  288 (389)
T PLN02886        212 YGGRKWKKLGGRGGSVFKVPEALIPPAGARVMSLTDGTSKMSKSAPSDQSRINLLDPPDVIANKIKR-CKTDSFPGLE--  288 (389)
T ss_pred             ccccccccccccCCceecCCeeccCcccceeeeCCCCCCcCCCCCCCCCCeEEecCCHHHHHHHHhc-CCCCCCCCcc--
Confidence                             3555554   35899999887899999974  899999999999999999 9999986443  


Q ss_pred             hhcCCCccchhHHHHHhhhcCChHhHHHHHHHHhcCCCChHHHHHHHHHHHHHHhHHHHHHHHHHhHH--HHHHHHhcCC
Q 027582          138 RKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDE--MVDAFMAVRP  215 (221)
Q Consensus       138 ~~~~~~p~v~~~~~~l~~~~~~~~~~eel~~~y~~g~~~~~~lK~~lae~l~~~l~pire~~~~~~~~--~l~~il~~~~  215 (221)
                      ++++++|+++|++.+|..|+  +.++++++++|. + +++++||+.|++.|+++|+||||||+++++|  +|+++|.++.
T Consensus       289 ~~~p~~p~v~nl~~i~~~~~--~~~~eei~~~~~-~-~~~g~~K~~Lae~I~~~L~Pirer~~~l~~d~~~l~~iL~~Ga  364 (389)
T PLN02886        289 FDNPERPECNNLLSIYQLVT--GKTKEEVLAECG-D-MRWGDFKPLLTDALIEHLSPIQVRYEEIMSDPSYLDSVLKEGA  364 (389)
T ss_pred             CCCCCCcccccHHHHHHHcc--CCCHHHHHHHhc-C-CCCchHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHH
Confidence            67889999999999999994  678999999996 4 7999999999999999999999999999986  8999998763

>PRK12556 tryptophanyl-tRNA synthetase; Provisional

Probab=100.00  E-value=2.3e-51  Score=368.02  Aligned_cols=193  Identities=19%  Similarity=0.283  Sum_probs=171.8

Q ss_pred             CccccccccHHHHHHhh-----CCCCCCcccccchhhhhccCCCCCCCCcccccCCCCcccccCCCCchHHHHHHHHHHH
Q 027582            1 MVKVAKCVTYNKVVGIF-----GFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAP   75 (221)
Q Consensus         1 ~~~l~r~~t~k~~~~~~-----g~~~~~~~g~l~YP~lqaa~~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~~laR~ia~   75 (221)
                      +++|+||+|||++....     |+.++.++|+|+||+||||        |||+|++   |+||||+||+||+||||++|+
T Consensus       103 ~g~L~R~~~~K~k~~~~~~~~~~~~~~~~~gll~YPvLqAA--------DIl~~~~---d~VpvG~DQ~qhleLtRdiA~  171 (332)
T PRK12556        103 KGLMNRAHAYKAKVDQNKEAGLDLDAGVNMGLYTYPILMAA--------DILLFQA---THVPVGKDQIQHIEIARDIAT  171 (332)
T ss_pred             HHHHHhccHHHHHHhhhhhhccccCCCCcchhhhchHHHhh--------hhhhccC---CEEEeccccHHHHHHHHHHHH
Confidence            36899999999987532     3445689999999999999        9999999   579999999999999999999


Q ss_pred             HhC------CCCcccc---ccCcccCCCCCCCCcCCCCCCCceecCCCHHHHHHHHhhccccCCcchhhhhhhcCCCccc
Q 027582           76 RIG------YHKPALI---ESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEV  146 (221)
Q Consensus        76 ~~n------~~~p~~l---~~~~lp~L~g~~~KMSkS~~~s~I~L~D~p~~I~~KI~k~A~td~~~~~~~~~~~~~~p~v  146 (221)
                      |||      ++.|..+   +++++|||+|  +|||||++| +|+|+|+|++|++||++ |+||+..     .+.+++|++
T Consensus       172 rfn~~yg~~f~~P~~~~~~~~~~l~gLdg--~KMSKS~~n-~I~L~D~p~~I~kKI~k-a~Td~~~-----~~~~~~p~~  242 (332)
T PRK12556        172 YFNHTFGDTFTLPEYVIQEEGAILPGLDG--RKMSKSYGN-VIPLFAEQEKLRKLIFK-IKTDSSL-----PNEPKDPET  242 (332)
T ss_pred             HHHHhccccCCCceeccccccccccCCCC--CCCCCCCCC-cccccCCHHHHHHHHHH-hccCCCc-----ccCCCCcch
Confidence            999      5778766   5799999999  599999974 89999999999999999 9999864     235789999


Q ss_pred             hhHHHHHhhhcCChHhHHHHHHHHhcCCCChHHHHHHHHHHHHHHhHHHHHHHHHHhHH--HHHHHHhcCC
Q 027582          147 DIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDE--MVDAFMAVRP  215 (221)
Q Consensus       147 ~~~~~~l~~~~~~~~~~eel~~~y~~g~~~~~~lK~~lae~l~~~l~pire~~~~~~~~--~l~~il~~~~  215 (221)
                      +|+++|+++|.+ .+++++++++|.+ +++|++||+.||+.|+++|+|+|+||++++++  +|+++|..+.
T Consensus       243 ~~l~~i~~~~~~-~~~~eei~~~y~~-~~~~~~~K~~lae~i~~~l~pire~~~~~~~~~~~~~~il~~G~  311 (332)
T PRK12556        243 SALFTIYKEFAT-EEEVQSMREKYET-GIGWGDVKKELFRVVDRELAGPREKYAMYMNEPSLLDEALEKGA  311 (332)
T ss_pred             hHHHHHHHHHCC-chhHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHH
Confidence            999999999963 4679999999986 59999999999999999999999999999976  8999998763

>PRK12284 tryptophanyl-tRNA synthetase; Reviewed

Probab=100.00  E-value=9.1e-51  Score=371.51  Aligned_cols=193  Identities=19%  Similarity=0.233  Sum_probs=168.2

Q ss_pred             CccccccccHHHHHHhh---CCC--CCCcccccchhhhhccCCCCCCCCcccccCCCCcccccCCCCchHHHHHHHHHHH
Q 027582            1 MVKVAKCVTYNKVVGIF---GFT--GEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAP   75 (221)
Q Consensus         1 ~~~l~r~~t~k~~~~~~---g~~--~~~~~g~l~YP~lqaa~~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~~laR~ia~   75 (221)
                      +++|+|++|||++....   |++  +++++|+|+||+||||        |||+|++|   +||||.||+||+||||+||+
T Consensus       102 ~g~L~Rm~q~K~k~~~~~~~g~~~~~~i~~Gll~YPvLqAA--------DILly~ad---~VPVG~DQ~qHlELaRdIA~  170 (431)
T PRK12284        102 KGLLNRAHAYKAAVDKNVAAGEDPDAGVTAGLFMYPVLMAA--------DILMFNAH---KVPVGRDQIQHIEMARDIAQ  170 (431)
T ss_pred             HHHHHhhhHHHHHHHhhhccccCcccCcchHHhhchHHHHh--------hhhhcCCC---EEEEcchhHHHHHHHHHHHH
Confidence            36899999999886433   332  4579999999999999        99999995   79999999999999999999


Q ss_pred             HhCC-------CCcccc---ccCcccCCCCCCCCcCCCCCCCceecCCCHHHHHHHHhhccccCCcchhhhhhhcCCCcc
Q 027582           76 RIGY-------HKPALI---ESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLE  145 (221)
Q Consensus        76 ~~n~-------~~p~~l---~~~~lp~L~g~~~KMSkS~~~s~I~L~D~p~~I~~KI~k~A~td~~~~~~~~~~~~~~p~  145 (221)
                      |||+       +.|..+   ++++||||+|  +|||||++ |+|+|+|+|++|++||++ |+||+..+     .++++|+
T Consensus       171 rFN~~yg~~~F~~Pe~~i~~~~~~I~gLdg--~KMSKS~~-n~I~L~Ds~~~I~kKI~~-A~TDs~~~-----~~~~~pe  241 (431)
T PRK12284        171 RFNHLYGGEFFVLPEAVIEESVATLPGLDG--RKMSKSYD-NTIPLFAPREELKKAIFS-IVTDSRAP-----GEPKDTE  241 (431)
T ss_pred             HHhhhcCCcccCCCccccccccccccCCCC--ccccCCCC-CEeeecCCHHHHHHHHhc-CCCCCCCC-----CCCCCCC
Confidence            9994       345333   3589999998  69999996 599999999999999999 99998753     2468899


Q ss_pred             chhHHHHHhhhcCChHhHHHHHHHHhcCCCChHHHHHHHHHHHHHHhHHHHHHHHHHhHH--HHHHHHhcCC
Q 027582          146 VDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDE--MVDAFMAVRP  215 (221)
Q Consensus       146 v~~~~~~l~~~~~~~~~~eel~~~y~~g~~~~~~lK~~lae~l~~~l~pire~~~~~~~~--~l~~il~~~~  215 (221)
                      +||+++|+++|+ +.+++++++++|.+| ++|++||+.|++.|+++|+||||||+++++|  +|++||.++.
T Consensus       242 ~snLl~i~~~~~-~~~~~eel~~~~~~g-~~~g~~K~~Lae~i~~~L~PiRer~~~l~~d~~~l~~iL~~Ga  311 (431)
T PRK12284        242 GSALFQLYQAFA-TPEETAAFRQALADG-IGWGDAKQRLFERIDRELAPMRERYEALIARPADIEDILLAGA  311 (431)
T ss_pred             cchHHHHHHHhC-CcchHHHHHHHHhcC-CChHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHH
Confidence            999999999996 346799999999845 9999999999999999999999999999986  8999998763

>TIGR00233 trpS tryptophanyl-tRNA synthetase

Probab=100.00  E-value=6.4e-50  Score=358.52  Aligned_cols=197  Identities=37%  Similarity=0.573  Sum_probs=168.9

Q ss_pred             ccccccHHHHHHhhCCC-----CCCcccccchhhhhccCCCCCCCCcccccCCCCcccccCCCCchHHHHHHHHHHHHhC
Q 027582            4 VAKCVTYNKVVGIFGFT-----GEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIG   78 (221)
Q Consensus         4 l~r~~t~k~~~~~~g~~-----~~~~~g~l~YP~lqaa~~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~~laR~ia~~~n   78 (221)
                      |++.+|+.++.+..++.     ++.++|+|+||+||||        |||+|++|   +||||+||+||+||||++|+|||
T Consensus        96 l~~~~t~~~l~r~~~~k~k~~~~~~~~g~l~YP~lqaa--------Dil~~~~d---~vpvG~DQ~~h~elaRdia~r~n  164 (328)
T TIGR00233        96 LSCQVTFGELKRMTQFKDKSQAENVPIGLFSYPVLQAA--------DILLYQAD---LVPVGIDQDQHLELTRDLAERFN  164 (328)
T ss_pred             HHccCCHHHHHhccCcchhccCCCCCchhhcchHHHHh--------hhhhcCCC---eeecccccHHHHHHHHHHHHHhh
Confidence            55666666666655443     3459999999999999        99999996   79999999999999999999999


Q ss_pred             ------CCCcccccc---CcccCCCCCCCCcCCCCCCCceecCCCHHHHHHHHhhccccCCcc-hhhhhhhcCCCccchh
Q 027582           79 ------YHKPALIES---SFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQE-SVELHRKLGANLEVDI  148 (221)
Q Consensus        79 ------~~~p~~l~~---~~lp~L~g~~~KMSkS~~~s~I~L~D~p~~I~~KI~k~A~td~~~-~~~~~~~~~~~p~v~~  148 (221)
                            +++|..+++   +.||||+|  +|||||++||+|+|+|+|++|++||++ |+||++. +..++...+++|++++
T Consensus       165 ~~~~~~f~~P~~l~~~~~~~l~gl~~--~KMSKS~~~s~I~L~D~~e~I~~KI~~-a~td~~~~~~~~~~~~~g~~~l~~  241 (328)
T TIGR00233       165 KKFKNFFPKPESLISKFFPRLMGLSG--KKMSKSDPNSAIFLTDTPKQIKKKIRK-AATDGGRVTLFEHREKGGVPNLLV  241 (328)
T ss_pred             hhcCcccCCChhhhccccCCCCCCCC--CcCCCCCCCCeEeecCCHHHHHHHHHh-cCCCCCCCcccCcCCCCCCchHHH
Confidence                  688988875   55777776  699999999999999999999999999 9999874 3333445566777777


Q ss_pred             HHHHHhhhcCChHhHHHHHHHHhcCCCChHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhcC
Q 027582          149 PVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVR  214 (221)
Q Consensus       149 ~~~~l~~~~~~~~~~eel~~~y~~g~~~~~~lK~~lae~l~~~l~pire~~~~~~~~~l~~il~~~  214 (221)
                      ++.++.++..+++++++++++|.+|+++|++||+.|+++|+++|+|+|+||+++++++|+++|..+
T Consensus       242 i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~lK~~lae~i~~~l~pirer~~~~~~~~~~~~l~~g  307 (328)
T TIGR00233       242 IYQYLSFFLIDDDKLKEIYEKYKSGKLLYGELKKALIEVLQEFLKEIQERRAEIAEEILDKILEPG  307 (328)
T ss_pred             HHHHhhccCCCcchHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            777777776556789999999999999999999999999999999999999999999999999875

This model represents tryptophanyl-tRNA synthetase. Some members of the family have a pfam00458 domain amino-terminal to the region described by this model.

>PRK12283 tryptophanyl-tRNA synthetase; Reviewed

Probab=100.00  E-value=2.2e-49  Score=359.62  Aligned_cols=196  Identities=21%  Similarity=0.251  Sum_probs=171.0

Q ss_pred             CccccccccHHHHHHhhCCCCCCcccccchhhhhccCCCCCCCCcccccCCCCcccccCCCCchHHHHHHHHHHHHhCCC
Q 027582            1 MVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYH   80 (221)
Q Consensus         1 ~~~l~r~~t~k~~~~~~g~~~~~~~g~l~YP~lqaa~~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~~laR~ia~~~n~~   80 (221)
                      +++|.|++|||++....+..++.++|+++||+||||        |||+|++   ++||||+||+||+||||+||+|||..
T Consensus       101 ~~~L~R~~~~Kdk~~~~~~~~~~~~Gll~YPvLqAA--------DILl~~a---~iVPVG~DQ~qHleLaRdIA~rfN~~  169 (398)
T PRK12283        101 LGWLERVPTYKDQQEKLKEKDLSTYGFLGYPLLQSA--------DILIYRA---GLVPVGEDQVPHVEMTREIARRFNHL  169 (398)
T ss_pred             HHHHHhhhHHHHHHhhhccccCCcchhhcCcHHHHH--------HHHhcCC---CEeeeccccHHHHHHHHHHHHHHHHh
Confidence            357899999999987543345689999999999999        9999999   47999999999999999999998852


Q ss_pred             ----------------------------------------------------------------------------Cccc
Q 027582           81 ----------------------------------------------------------------------------KPAL   84 (221)
Q Consensus        81 ----------------------------------------------------------------------------~p~~   84 (221)
                                                                                                  .|..
T Consensus       170 yg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~  249 (398)
T PRK12283        170 YGREPGFEEKAEAAIKKLGKKRAKLYHELRNAYQEEGDDEALEQARALLQEQQNLSMGDRERLFGYLEGAGKIILPEPQA  249 (398)
T ss_pred             cCccccchhHHHHHhhccchhhHHHHHHHHHHHHhhcchhhhhhhhhhhhhhhhhhhhhhccccccccccCCcccCCCcc
Confidence                                                                                        2332


Q ss_pred             --cccCcccCCCCCCCCcCCCCCCCceecCCCHHHHHHHHhhccccCCcchhhhhhhcCCCccchhHHHHHhhhcCChHh
Q 027582           85 --IESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAE  162 (221)
Q Consensus        85 --l~~~~lp~L~g~~~KMSkS~~~s~I~L~D~p~~I~~KI~k~A~td~~~~~~~~~~~~~~p~v~~~~~~l~~~~~~~~~  162 (221)
                        ..+++||||+|  +|||||++ |+|+|+|+|++|++||++ |+||+..   +++..+++|++||+++|+++|+ +.++
T Consensus       250 ~~~~~~~I~gLdg--~KMSKS~~-n~I~L~Ds~~~I~kKI~~-a~TDs~~---~~~~~~g~Pe~~nl~~i~~~~~-~~~~  321 (398)
T PRK12283        250 LLTEASKMPGLDG--QKMSKSYG-NTIGLREDPESVTKKIRT-MPTDPAR---VRRTDPGDPEKCPVWQLHQVYS-DEET  321 (398)
T ss_pred             cccCCCcccCCCC--CcCCCCCC-CeeeCcCCHHHHHHHHHh-CCCCCcc---cccCCCCCCCcCHHHHHHHHhC-CChH
Confidence              22589999988  69999976 599999999999999999 9998753   3466679999999999999995 3457


Q ss_pred             HHHHHHHHhcCCCChHHHHHHHHHHHHHHhHHHHHHHHHHhHH--HHHHHHhcCC
Q 027582          163 LEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDE--MVDAFMAVRP  215 (221)
Q Consensus       163 ~eel~~~y~~g~~~~~~lK~~lae~l~~~l~pire~~~~~~~~--~l~~il~~~~  215 (221)
                      ++++.++|++|+++|++||+.|++.|+++|+|||||+.+++++  +|++||+.+.
T Consensus       322 ~~~i~~~~~~g~~~~g~~K~~lae~v~e~L~~irer~~~~~~~~~~~~~il~~G~  376 (398)
T PRK12283        322 KEWVQKGCRSAGIGCLECKQPVIDAILREQQPMRERAQKYEDDPSLVRAIVADGC  376 (398)
T ss_pred             HHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHH
Confidence            8999999999999999999999999999999999999999876  8999998763

>KOG2713 consensus Mitochondrial tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=1.2e-49  Score=342.60  Aligned_cols=196  Identities=22%  Similarity=0.294  Sum_probs=177.6

Q ss_pred             CccccccccHHHHHHhhCCCCCCcccccchhhhhccCCCCCCCCcccccCCCCcccccCCCCchHHHHHHHHHHHHhCC-
Q 027582            1 MVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGY-   79 (221)
Q Consensus         1 ~~~l~r~~t~k~~~~~~g~~~~~~~g~l~YP~lqaa~~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~~laR~ia~~~n~-   79 (221)
                      +++|+||+|||+++++.+ ....++|+|+||+||||        |||+|++   ++||||.||.||+||+|.+|++||. 
T Consensus       115 mg~L~rm~Q~KeKs~~~~-~~~~~vGLftYPvLqAA--------DILLYks---ThVPVGeDQsQHleL~r~lA~~fN~~  182 (347)
T KOG2713|consen  115 MGRLARMPQWKEKSERFK-VGDVPVGLFTYPVLQAA--------DILLYKS---THVPVGEDQSQHLELARHLAQAFNKT  182 (347)
T ss_pred             hHHHHhhHHHHhhhhhhc-cCccceeeecchhHhhh--------hHhhhcc---ccccCCccHHHHHHHHHHHHHHHhhh
Confidence            578999999999998664 35689999999999999        9999999   7899999999999999999999995 


Q ss_pred             ------CCccccc---cCcccCCCCCCCCcCCCCC--CCceecCCCHHHHHHHHhhccccCCcchhhhhhhcCCCccchh
Q 027582           80 ------HKPALIE---SSFFPALQGETGKMSASDP--NSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDI  148 (221)
Q Consensus        80 ------~~p~~l~---~~~lp~L~g~~~KMSkS~~--~s~I~L~D~p~~I~~KI~k~A~td~~~~~~~~~~~~~~p~v~~  148 (221)
                            |.|..+.   +.+|++|..|.+|||||++  .|+|+|+|+|+.|.+||+| |.||...  ...|+++++|+|+|
T Consensus       183 Y~~~~fpvP~~il~~~~~rV~SL~dpekKMSKSd~n~~s~I~l~DS~~~I~~Ki~k-a~TD~~~--~vtYd~~~RpgvsN  259 (347)
T KOG2713|consen  183 YGTEIFPVPEQILRQSHARVMSLRDPEKKMSKSDPNPKSRINLTDSPDLIVKKIKK-AQTDNTS--GVTYDPANRPGVSN  259 (347)
T ss_pred             ccCeeecCcHHHHhhhhhhhhhccChhhhcccCCCCCcceEEecCCHHHHHHHHHH-Hhccccc--ceeeCCccccchhH
Confidence                  6665543   6899999999999999997  4799999999999999999 9999654  55699999999999


Q ss_pred             HHHHHhhhcCChHhHHHHHHHHhcCCCChHHHHHHHHHHHHHHhHHHHHHHHHHhHH--HHHHHHhcCC
Q 027582          149 PVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDE--MVDAFMAVRP  215 (221)
Q Consensus       149 ~~~~l~~~~~~~~~~eel~~~y~~g~~~~~~lK~~lae~l~~~l~pire~~~~~~~~--~l~~il~~~~  215 (221)
                      ++++++..  ++.+++|+.+.++ + ++++++|..||++|++.|+|||++|+++.++  +|+++|+.+-
T Consensus       260 Llni~aaV--t~~s~eeV~~~~a-~-~~~~~fK~~vaeAvie~L~PIr~~fee~~~~~~~l~kvl~~Ga  324 (347)
T KOG2713|consen  260 LLNIYAAV--TGKSIEEVVEESA-N-MSTADFKDNVAEAVIEHLAPIRTEFEELINEPEYLDKVLEEGA  324 (347)
T ss_pred             HHHHHHHH--cCCCHHHHHHHhc-c-CCHHHHHHHHHHHHHHHhccHHHHHHHHhcCHHHHHHHHHHhH
Confidence            99999999  5778999999876 4 8999999999999999999999999999986  9999998763

>PRK08560 tyrosyl-tRNA synthetase; Validated

Probab=100.00  E-value=1e-46  Score=338.09  Aligned_cols=177  Identities=27%  Similarity=0.420  Sum_probs=158.6

Q ss_pred             cccccccHHHHHHh---hCCC-CCCcccccchhhhhccCCCCCCCCcccccCCCCcccccCCCCchHHHHHHHHHHHHhC
Q 027582            3 KVAKCVTYNKVVGI---FGFT-GEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIG   78 (221)
Q Consensus         3 ~l~r~~t~k~~~~~---~g~~-~~~~~g~l~YP~lqaa~~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~~laR~ia~~~n   78 (221)
                      +|++.+|+.++.+.   +++. ++.++|+|+||+||||        |||.|++|   +||||.||+||++|||++|+|||
T Consensus       125 ~l~~~~~~~~l~r~~~~~~~~~~~~~~g~l~YP~lqaa--------Dil~~~ad---~vpvG~DQ~~h~~l~Rdia~~~n  193 (329)
T PRK08560        125 KLAKNTTLARARRSMTIMGRRMEEPDVSKLVYPLMQVA--------DIFYLDVD---IAVGGMDQRKIHMLAREVLPKLG  193 (329)
T ss_pred             HHHhhccHHHHHHhhhhhcccCCCCCHHHHHHHHHHHH--------HHHHhCCC---EEEechhHHHHHHHHHHhhHhcC
Confidence            47889999998873   4443 3469999999999999        99999995   79999999999999999999999


Q ss_pred             CCCccccccCcccCCCCCCCCcCCCCCCCceecCCCHHHHHHHHhhccccCCcchhhhhhhcCCCccchhHHHHHhhhcC
Q 027582           79 YHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLE  158 (221)
Q Consensus        79 ~~~p~~l~~~~lp~L~g~~~KMSkS~~~s~I~L~D~p~~I~~KI~k~A~td~~~~~~~~~~~~~~p~v~~~~~~l~~~~~  158 (221)
                      +.+|.++++++||||+|+++|||||+|+|+|+|+|+|++|++||++ ||||++           +++.+++++|+++|..
T Consensus       194 ~~~p~~l~~~~l~~L~g~~~KMSKS~p~~~I~L~D~~~~I~~KI~k-A~t~~~-----------~~~~n~v~~~~~~~~~  261 (329)
T PRK08560        194 YKKPVCIHTPLLTGLDGGGIKMSKSKPGSAIFVHDSPEEIRRKIKK-AYCPPG-----------EVEGNPVLEIAKYHIF  261 (329)
T ss_pred             CCCceEEEcCccCCCCCCCCCCcCCCCCCeecccCCHHHHHHHHHh-ccCCCC-----------CcCCCcHHHHHHHHhh
Confidence            9999999999999999987799999988899999999999999999 999763           4666778889888753


Q ss_pred             C------------------hHhHHHHHHHHhcCCCChHHHHHHHHHHHHHHhHHHHHHHHHH
Q 027582          159 D------------------DAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAV  202 (221)
Q Consensus       159 ~------------------~~~~eel~~~y~~g~~~~~~lK~~lae~l~~~l~pire~~~~~  202 (221)
                      +                  .+++++++++|++|+++|++||+.||++|+++|+|||++|++-
T Consensus       262 ~~~~~~~~~r~~~~g~~~~~~~~eel~~~y~~g~l~~~~lK~~la~~i~~~l~pir~~~~~~  323 (329)
T PRK08560        262 PRYDPFVIERPEKYGGDLEYESYEELERDYAEGKLHPMDLKNAVAEYLIEILEPVREYLEEG  323 (329)
T ss_pred             ccccceEEechhhcCCCCCcCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            2                  1579999999999999999999999999999999999999864

>cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase

Probab=100.00  E-value=1.8e-45  Score=323.58  Aligned_cols=172  Identities=44%  Similarity=0.697  Sum_probs=150.3

Q ss_pred             ccccccHHHHHHhhCCC------CCCcccccchhhhhccCCCCCCCCcccccCCCCcccccCCCCchHHHHHHHHHHHHh
Q 027582            4 VAKCVTYNKVVGIFGFT------GEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRI   77 (221)
Q Consensus         4 l~r~~t~k~~~~~~g~~------~~~~~g~l~YP~lqaa~~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~~laR~ia~~~   77 (221)
                      |++.+|++++.+..+++      ++.++|+|+||+||||        |||++++   |+||||.||+||+|+||++|+||
T Consensus        93 l~~~~~~~~l~r~~~fk~~~~~~~~~~~g~~~YP~lqaa--------Dil~~~~---~~vpvG~DQ~~h~~l~Rdia~r~  161 (280)
T cd00806          93 LSCVVTFGELERMTGFKDKSAQGESVNIGLLTYPVLQAA--------DILLYKA---CLVPVGIDQDPHLELTRDIARRF  161 (280)
T ss_pred             HhCcCCHHHHHhccchhhhhccCCCCcchhhcchHHHHh--------hhhhccC---CEEeeccccHHHHHHHHHHHHHh
Confidence            44555555555544443      3789999999999999        9999999   68999999999999999999999


Q ss_pred             C------CCCcccccc--CcccCCCCCCCCcCCCCCCCceecCCCHHHHHHHHhhccccCCcchhhhhhhcCCCccchhH
Q 027582           78 G------YHKPALIES--SFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIP  149 (221)
Q Consensus        78 n------~~~p~~l~~--~~lp~L~g~~~KMSkS~~~s~I~L~D~p~~I~~KI~k~A~td~~~~~~~~~~~~~~p~v~~~  149 (221)
                      |      +++|..+++  ++||||+|+++|||||+++|+|+|+|+|++|++||++ |+||+..+  ++++.+++|+++|+
T Consensus       162 n~~~~~~~~~P~~l~~~~~~i~~l~g~~~KMSKS~~~~~I~L~d~~~~i~~KI~~-a~td~~~~--~~~~~~~~~~~~~l  238 (280)
T cd00806         162 NKLYGEIFPKPAALLSKGAFLPGLQGPSKKMSKSDPNNAIFLTDSPKEIKKKIMK-AATDGGRT--EHRRDGGGPGVSNL  238 (280)
T ss_pred             ccccccccCCCeeeccCCCccccCCCCCCcccCCCCCCeEEeeCCHHHHHHHHHh-ccCCCCCc--eecCCCCCCCcChH
Confidence            9      789999887  9999999987899999998899999999999999999 99999864  56899999999999


Q ss_pred             HHHHhhhc-CChHhHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 027582          150 VKYLSFFL-EDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTE  190 (221)
Q Consensus       150 ~~~l~~~~-~~~~~~eel~~~y~~g~~~~~~lK~~lae~l~~  190 (221)
                      ++||++|. .+.++++++ ++|+.|++++++||+.||+.|++
T Consensus       239 ~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~K~~lae~i~~  279 (280)
T cd00806         239 VEIYSAFFNDDDEELEEI-DEYRSGGLGYGECKKLLAEAIQE  279 (280)
T ss_pred             HHHHHHHhCCCHHHHHHH-HHhhcCCCCHHHHHHHHHHHHHh
Confidence            99999875 344555555 89999999999999999999986

Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding

>PTZ00126 tyrosyl-tRNA synthetase; Provisional

Probab=100.00  E-value=3.4e-44  Score=326.75  Aligned_cols=177  Identities=24%  Similarity=0.386  Sum_probs=150.6

Q ss_pred             cccccccHHHHHH---hhCCC--CCCcccccchhhhhccCCCCCCCCcccccCCCCcccccCCCCchHHHHHHHHHHHHh
Q 027582            3 KVAKCVTYNKVVG---IFGFT--GEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRI   77 (221)
Q Consensus         3 ~l~r~~t~k~~~~---~~g~~--~~~~~g~l~YP~lqaa~~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~~laR~ia~~~   77 (221)
                      .+++.+|++++++   .+++.  ++.++|+|+||+||||        ||+.+++|   +||||.||+||++|||++|++|
T Consensus       166 ~la~~~tl~r~~r~~~~~~r~~~~~~~~g~l~YP~LQaa--------Dil~l~ad---ivpvG~DQ~~~~~LaRdia~~~  234 (383)
T PTZ00126        166 DIARSFNITRIKRCSQIMGRSEGDEQPCAQILYPCMQCA--------DIFYLKAD---ICQLGMDQRKVNMLAREYCDKK  234 (383)
T ss_pred             HHhccCCHHHHHhhhhhhccccCCCCCchhhhhhHHHhh--------hhhccCCC---EEEeCccHHHHHHHHHHHHHHh
Confidence            4678889998875   33443  3468999999999999        99999996   6999999999999999999999


Q ss_pred             CC-CCccccccCcccCCCCCCCCcCCCCCCCceecCCCHHHHHHHHhhccccCCcchhhhhhhcCCCccchhHHHHHhhh
Q 027582           78 GY-HKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFF  156 (221)
Q Consensus        78 n~-~~p~~l~~~~lp~L~g~~~KMSkS~~~s~I~L~D~p~~I~~KI~k~A~td~~~~~~~~~~~~~~p~v~~~~~~l~~~  156 (221)
                      |+ ++|.++++++||||+++++|||||++||+|+|+|+|++|++||++ ||||++..       ++||    ++.|++++
T Consensus       235 ~~~~~~~~~~~~~lpgL~dg~~KMSKS~~ns~I~L~Dspe~I~kKI~k-A~t~p~~~-------~~np----v~~~~~~~  302 (383)
T PTZ00126        235 KIKKKPIILSHHMLPGLLEGQEKMSKSDPNSAIFMEDSEEDVNRKIKK-AYCPPGVI-------EGNP----ILAYFKSI  302 (383)
T ss_pred             CCCCCceeecccccccCCCCCCCCCcCCCCCeecCCCCHHHHHHHHHh-CcCCCCCC-------CCCc----chhhhhhc
Confidence            95 688888899999997556899999999999999999999999999 99987532       3455    44555542


Q ss_pred             cC------------------ChHhHHHHHHHHhcCCCChHHHHHHHHHHHHHHhHHHHHHHHHH
Q 027582          157 LE------------------DDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAV  202 (221)
Q Consensus       157 ~~------------------~~~~~eel~~~y~~g~~~~~~lK~~lae~l~~~l~pire~~~~~  202 (221)
                      ..                  +..++++++++|.+|.++|++||++||++|+++|+|||++|+.-
T Consensus       303 ~~~~~~~~~I~r~~k~gg~~~~~~~eel~~~y~~g~l~p~dlK~~lae~i~~~L~PIRe~~~~~  366 (383)
T PTZ00126        303 VFPAFNSFTVLRKEKNGGDVTYTTYEELEKDYLSGALHPGDLKPALAKYLNLMLQPVRDHFQNN  366 (383)
T ss_pred             ccccccceeEeccccccCccCcCCHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            10                  12589999999999999999999999999999999999999854

>PTZ00348 tyrosyl-tRNA synthetase; Provisional

Probab=100.00  E-value=8.1e-44  Score=342.00  Aligned_cols=188  Identities=20%  Similarity=0.291  Sum_probs=158.7

Q ss_pred             ccccccHHHHHH---hhCCCC-CCcccccchhhhhccCCCCCCCCcccccCCCCcccccCCCCchHHHHHHHHHHHHhCC
Q 027582            4 VAKCVTYNKVVG---IFGFTG-EDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGY   79 (221)
Q Consensus         4 l~r~~t~k~~~~---~~g~~~-~~~~g~l~YP~lqaa~~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~~laR~ia~~~n~   79 (221)
                      +++.+|+.++++   .+|+.+ +.++|+++||+||||        |||.+++|   +||||.||+||+||||++|++||.
T Consensus       133 v~~l~t~~q~K~~~~~~g~~~~~i~~gll~YPvLQAA--------DIl~l~ad---ivpvG~DQ~qh~eLaRdia~~~g~  201 (682)
T PTZ00348        133 IGRQNTIARIKKCCTIMGKTEGTLTAAQVLYPLMQCA--------DIFFLKAD---ICQLGLDQRKVNMLAREYCDLIGR  201 (682)
T ss_pred             HHHHhhHHHHHHHHHhhcccCCCCchHHHhhhHHHhh--------cccccCCC---EEEeCccHHHHHHHHHHHHHHhCC
Confidence            445555555544   355544 479999999999999        99999996   699999999999999999999995


Q ss_pred             -CCccccccCcccCCCCCCCCcCCCCCCCceecCCCHHHHHHHHhhccccCCcchhhhhhhcCCCc----cchhHHHHHh
Q 027582           80 -HKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANL----EVDIPVKYLS  154 (221)
Q Consensus        80 -~~p~~l~~~~lp~L~g~~~KMSkS~~~s~I~L~D~p~~I~~KI~k~A~td~~~~~~~~~~~~~~p----~v~~~~~~l~  154 (221)
                       ++|.++++++||||+|+++|||||+++|+|+|+|+|++|++||++ ||||+..........+++|    +.+++++|++
T Consensus       202 ~~kpvil~~~~LpGL~gg~~KMSKS~p~naI~L~Dspe~I~kKI~k-A~td~~~~~~~~~~d~g~p~~~~e~npvl~i~~  280 (682)
T PTZ00348        202 KLKPVILSHHMLAGLKQGQAKMSKSDPDSAIFMEDTEEDVARKIRQ-AYCPRVKQSASEITDDGAPVATDDRNPVLDYFQ  280 (682)
T ss_pred             CCCceecccccCcCCCCCCCcCCCCCCCCeecccCCHHHHHHHHHh-CCCCCCcCcccccCCCCCccccCCCCcHHHHHH
Confidence             588888899999999767899999998899999999999999999 9999863212224557777    7789999988


Q ss_pred             hhcC--C----------hHhHHHHHHHHhcCCCChHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 027582          155 FFLE--D----------DAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVT  203 (221)
Q Consensus       155 ~~~~--~----------~~~~eel~~~y~~g~~~~~~lK~~lae~l~~~l~pire~~~~~~  203 (221)
                      ++..  .          ++++++++++|++|+++|++||++|+++|+++|+|||++|+.-.
T Consensus       281 ~~if~~~g~~~~i~~~~~~~~eele~~y~~g~l~~~dlK~~lae~l~~~L~PIRe~~~~~~  341 (682)
T PTZ00348        281 CVVYARPGAVATIDGTTYATYEDLEQAFVSDEVSEEALKSCLIDEVNALLEPVRQHFASNP  341 (682)
T ss_pred             HHhccccchhcccCCcccCcHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHcCh
Confidence            8731  1          26799999999999999999999999999999999999998653

>PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6

Probab=100.00  E-value=5.2e-40  Score=289.84  Aligned_cols=177  Identities=33%  Similarity=0.522  Sum_probs=156.3

Q ss_pred             ccccccccHHHHHHhhCCCCCCcccccchhhhhccCCCCCCCCcccccCCCCcccccCCCCchHHHHHHHHHHHHhCCC-
Q 027582            2 VKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYH-   80 (221)
Q Consensus         2 ~~l~r~~t~k~~~~~~g~~~~~~~g~l~YP~lqaa~~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~~laR~ia~~~n~~-   80 (221)
                      .+|+|++++++++++++.+++.++|+|+||+||||        ||+.+++|   +||||.||++|++++|++|+|+|+. 
T Consensus       109 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~Yp~lQaa--------D~~~l~~~---~~~~G~DQ~~~~~l~rd~a~k~~~~~  177 (292)
T PF00579_consen  109 FSLNRMLRFKDVKKRLKNGEGISLGEFSYPLLQAA--------DILLLKAD---LVPGGIDQRGHIELARDLARKFNYKE  177 (292)
T ss_dssp             HHHHHHHHHHHHHHHHSSTTTSBHHHHHHHHHHHH--------HHHHTTHS---EEEEEGGGHHHHHHHHHHHHHHTHHS
T ss_pred             cchhhhhhhcccccccccccCcceeeEEccccccc--------ceeeeccc---cccccchHHHHHHHHHHHHhhhcccc
Confidence            35778888888777776556799999999999999        99999996   7999999999999999999999987 


Q ss_pred             ---CccccccCcccCCCCCCCCcCCCCCCCceecCCCHHHHHHHHhhccccCCcchhhhhhhcCCCccchh-HHHHHhhh
Q 027582           81 ---KPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDI-PVKYLSFF  156 (221)
Q Consensus        81 ---~p~~l~~~~lp~L~g~~~KMSkS~~~s~I~L~D~p~~I~~KI~k~A~td~~~~~~~~~~~~~~p~v~~-~~~~l~~~  156 (221)
                         +|..++++++|+|+|. +|||||++|++|+|+|++++|++||++ |+|++..  +.++....++.+++ ++.++..+
T Consensus       178 ~~~~p~~l~~~~l~~l~G~-~KMSKS~~ns~I~L~d~~~~i~~Ki~~-a~~~~~~--~~~~~~~~~~~~~~~~i~~~~~~  253 (292)
T PF00579_consen  178 IFPKPAGLTSPLLPGLDGQ-KKMSKSDPNSAIFLDDSPEEIRKKIKK-AFCDPDR--ENPRLLKGRPFISPFLIERLEAF  253 (292)
T ss_dssp             TSSS-EEEEETCBBSTTSS-SBTTTTTTGGS-BTTTTHHHHHHHHHH-SHTSTTS--HHHHHHHHHHTHHHHHHHHHHHH
T ss_pred             cccCchheeeccccccCCc-cccCccCCccEEEEeccchhHHHHHHH-HhhCCCc--ccccccccCCCCCHHHHHHHHHh
Confidence               9999999999999995 499999999999999999999999999 9999987  44567778899998 88888887


Q ss_pred             cCCh--HhHHHHHHHHhcCCCChHHHHHHHHHHHHHHhH
Q 027582          157 LEDD--AELEHIKKEYGAGGMLTGEVKQRLAKVLTELVE  193 (221)
Q Consensus       157 ~~~~--~~~eel~~~y~~g~~~~~~lK~~lae~l~~~l~  193 (221)
                      ..+.  .+++++.++|.+|.+|++++|++++++++++|+
T Consensus       254 ~~~~~~~~~~~~~~~~~~g~l~~~~~K~~~~e~~~~~le  292 (292)
T PF00579_consen  254 HGNDDYRSLEELLADYVSGELHPGDLKKALAEALNEFLE  292 (292)
T ss_dssp             HHHHHESHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHH
T ss_pred             cCCcchHHHHHHHHHHccCCcChHHHHHHHHHHHHHhhC
Confidence            5322  368999999999999999999999999999885

1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2JAN_A 3P0J_B 3P0I_B 3P0H_B 1YID_C 2A4M_C 1YIA_C 1YI8_C 2EL7_A 3PRH_A ....

>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase

Probab=100.00  E-value=5.1e-38  Score=274.83  Aligned_cols=156  Identities=27%  Similarity=0.354  Sum_probs=136.5

Q ss_pred             cccccccHHHHHHhhCC------CCCCcccccchhhhhccCCCCCCCCcccccCCCCcccccCCCCchHHHHHHHHHHHH
Q 027582            3 KVAKCVTYNKVVGIFGF------TGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPR   76 (221)
Q Consensus         3 ~l~r~~t~k~~~~~~g~------~~~~~~g~l~YP~lqaa~~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~~laR~ia~~   76 (221)
                      ++++.+++.++.+..++      .++.++|+|+||+||||        ||+.+++   |+||||.||++|++++|++|+|
T Consensus       106 ~l~~~~~~~~l~~~~~~k~r~~~~~~~~~~~~~YP~lQaa--------Di~~l~~---~l~~~G~DQ~~~i~~~rd~a~r  174 (269)
T cd00805         106 RLGKHFTVNRMLRRDAVKVRLEEEEGISFSEFIYPLLQAY--------DFVYLDV---DLQLGGSDQRGNITLGRDLIRK  174 (269)
T ss_pred             HHHhhCcHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHh--------hHHHHhC---CeeEecHHHHHHHHHHHHHHHH
Confidence            46777777777764432      35689999999999999        9999999   5799999999999999999999


Q ss_pred             hCCCCccccccCcccCCCCCCCCcCCCCCCCc-eecCCCHHHHHHHHhhccccCCcchhhhhhhcCCCccchhHHHHHhh
Q 027582           77 IGYHKPALIESSFFPALQGETGKMSASDPNSA-IYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSF  155 (221)
Q Consensus        77 ~n~~~p~~l~~~~lp~L~g~~~KMSkS~~~s~-I~L~D~p~~I~~KI~k~A~td~~~~~~~~~~~~~~p~v~~~~~~l~~  155 (221)
                      ||+.+|..+++++||||+|  +|||||++|+. |++.|+|++|++||++ |+||               ++.+++.++.+
T Consensus       175 ~~~~~~~~l~~~ll~~l~G--~KMSKS~~~~~~i~l~dsp~~i~~Ki~~-a~~~---------------~v~~~l~~~~~  236 (269)
T cd00805         175 LGYKKVVGLTTPLLTGLDG--GKMSKSEGNAIWDPVLDSPYDVYQKIRN-AFDP---------------DVLEFLKLFTF  236 (269)
T ss_pred             hCCCCcEEEeeccccCCCC--CcccCCCCCcccccCCCCHHHHHHHHHc-CCcH---------------HHHHHHHHHHc
Confidence            9999999999999999999  59999999866 7999999999999999 9996               24566666666


Q ss_pred             hcCChHhHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 027582          156 FLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTE  190 (221)
Q Consensus       156 ~~~~~~~~eel~~~y~~g~~~~~~lK~~lae~l~~  190 (221)
                      +  +.++++|++++|.+|.+ ++++|+.||++|++
T Consensus       237 ~--~~~~~eel~~~~~~~~~-~~~~K~~la~~i~~  268 (269)
T cd00805         237 L--DYEEIEELEEEHAEGPL-PRDAKKALAEELTK  268 (269)
T ss_pred             C--CHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHh
Confidence            5  67899999999998876 99999999999986

Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.

>KOG2144 consensus Tyrosyl-tRNA synthetase, cytoplasmic [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=5.7e-37  Score=264.83  Aligned_cols=182  Identities=24%  Similarity=0.301  Sum_probs=155.8

Q ss_pred             cccccccHHHHHHh--hC--CCCCCcccccchhhhhccCCCCCCCCcccccCCCCcccccCCCCchHHHHHHHHHHHHhC
Q 027582            3 KVAKCVTYNKVVGI--FG--FTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIG   78 (221)
Q Consensus         3 ~l~r~~t~k~~~~~--~g--~~~~~~~g~l~YP~lqaa~~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~~laR~ia~~~n   78 (221)
                      ++++.+|-++.++.  .+  ..++..++.++||+|||+        |++.+++|+   +.+|+|||..+.+||++++.+|
T Consensus       134 rl~~~~~~hdak~agaevvkqve~plls~llYP~MQal--------De~~L~vD~---qfgGvDQRKIf~~A~eylp~l~  202 (360)
T KOG2144|consen  134 RLSSNVTQHDAKKAGAEVVKQVENPLLSGLLYPGMQAL--------DEFYLEVDA---QFGGVDQRKIFVLAEEYLPDLG  202 (360)
T ss_pred             HHHhhccHhHHHHhhhhHHHhhcchhhhhhhhhhHHHh--------hHHHHhhhH---HhcCccHHHHHHHHHHhhhhhC
Confidence            45666666666653  22  246688999999999999        999999984   7999999999999999999999


Q ss_pred             CCCccccccCcccCCCCCCCCcCCCCCCCceecCCCHHHHHHHHhhccccCCcchhhhhhhcCCCccchh----HHHHHh
Q 027582           79 YHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDI----PVKYLS  154 (221)
Q Consensus        79 ~~~p~~l~~~~lp~L~g~~~KMSkS~~~s~I~L~D~p~~I~~KI~k~A~td~~~~~~~~~~~~~~p~v~~----~~~~l~  154 (221)
                      +.+|.++++||||||++ ++|||||+++|.|+|.|+|++|.+||++ |||.++..       ++|++.+.    +|.++.
T Consensus       203 ykKrihLmnpMvPGL~q-~~KMSsSd~~SkIdllD~~~~V~kKI~k-AfCePg~v-------e~Ng~L~fvkyvvfP~~~  273 (360)
T KOG2144|consen  203 YKKRIHLMNPMVPGLAQ-GEKMSSSDPLSKIDLLDEPADVNKKIKK-AFCEPGNV-------EGNGCLSFVKYVVFPIFE  273 (360)
T ss_pred             cccceeecCCCCccccc-cCccccCCcccccccccCHHHHHHHHHH-hcCCCCCc-------CCCcHHHHHHHHHhhhHH
Confidence            99999999999999996 4899999999999999999999999999 99998753       57887753    445554


Q ss_pred             hhcC-------------ChHhHHHHHHHHhcCCCChHHHHHHHHHHHHHHhHHHHHHHHHHhH
Q 027582          155 FFLE-------------DDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTD  204 (221)
Q Consensus       155 ~~~~-------------~~~~~eel~~~y~~g~~~~~~lK~~lae~l~~~l~pire~~~~~~~  204 (221)
                      .+..             +..++||++++|.+|.+||+|||+.|+.+|+++|+|||+.++..-+
T Consensus       274 e~~~~~i~r~ek~GG~~tf~syed~e~~y~~~~lhPgDLK~~l~~alN~lL~~ir~~~~~~~~  336 (360)
T KOG2144|consen  274 EFGVEVIDRPEKFGGNKTFKSYEDIEKDYEEGELHPGDLKKGLEKALNELLQPIREEFSNWPE  336 (360)
T ss_pred             hcCceeecchhhcCCcchhHHHHHHHHHHHhCCcChHHHHHHHHHHHHHHHHHHHHHHhcChh
Confidence            4321             2478999999999999999999999999999999999999988544

>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase

Probab=100.00  E-value=5.9e-35  Score=256.01  Aligned_cols=157  Identities=18%  Similarity=0.203  Sum_probs=130.1

Q ss_pred             ccccccHHHHHHhhCCC----CCCcccccchhhhhccCCCCCCCCcccccCCCCcc-cccCCCCchHHHHHHHHHHHHhC
Q 027582            4 VAKCVTYNKVVGIFGFT----GEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRC-LIPCAIDQDPYFRMTRDVAPRIG   78 (221)
Q Consensus         4 l~r~~t~k~~~~~~g~~----~~~~~g~l~YP~lqaa~~~~~~~~Dil~~~ad~~~-~vpvG~DQ~~h~~laR~ia~~~n   78 (221)
                      +++.+++.++.+..++.    ++.++|+|+||+||||        |||.++++..| +||||.||+||+++||++|+|||
T Consensus       107 l~~~~~~~~l~~~~~~k~r~~~~~~~~~~~Yp~lQaa--------D~l~l~~~~~~~~vp~G~DQ~~~i~l~rdla~r~n  178 (273)
T cd00395         107 LGKHVYVNYMERKTSFQSRSEEGISATEFTYPPLQAA--------DFLLLNTTEGCDIQPGGSDQWGNITLGRELARRFN  178 (273)
T ss_pred             HHccCcHHHHHhChHHHHHhcCCCCchhhhhHHHHHH--------HHHHHhcccCCcEEEecHHHHHHHHHHHHHHHHhC
Confidence            56677777776654432    3689999999999999        99999885555 89999999999999999999998


Q ss_pred             -CCCccccccCcccCCCCCCCCcCCCCCCCc--eecCCCHHHHHHHHhhccccCCcchhhhhhhcCCCccchhHHHHHhh
Q 027582           79 -YHKPALIESSFFPALQGETGKMSASDPNSA--IYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSF  155 (221)
Q Consensus        79 -~~~p~~l~~~~lp~L~g~~~KMSkS~~~s~--I~L~D~p~~I~~KI~k~A~td~~~~~~~~~~~~~~p~v~~~~~~l~~  155 (221)
                       +++|..+++|+||||+|  .|||||++|+.  |+++|+|++|++||++ |+                  .++++.|+++
T Consensus       179 ~~~~p~~l~~p~l~~l~G--~KMSKS~~~~i~l~~~~dsp~~i~~ki~~-a~------------------d~~v~~~~~~  237 (273)
T cd00395         179 GFTIAEGLTIPLVTKLDG--PKFGKSESGPKWLDTEKTSPYEFYQFWIN-AV------------------DSDVINILKY  237 (273)
T ss_pred             CCCCCeEEeeccccCCCC--CcCCCCCCCCccccccCCCHHHHHHHHHc-cc------------------HhHHHHHHHH
Confidence             57898888999999999  49999998743  4479999999999999 85                  2556788888


Q ss_pred             hcC-ChHhHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 027582          156 FLE-DDAELEHIKKEYGAGGMLTGEVKQRLAKVLTE  190 (221)
Q Consensus       156 ~~~-~~~~~eel~~~y~~g~~~~~~lK~~lae~l~~  190 (221)
                      |+. +.+++++|.+++.+| .+++++|+.||+.|++
T Consensus       238 ~t~~~~~ei~~i~~~~~~~-~~~~~~K~~La~~i~~  272 (273)
T cd00395         238 FTFLSKEEIERLEQEQYEA-PGYRVAQKTLAEEVTK  272 (273)
T ss_pred             HcCCCHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHh
Confidence            763 566777777777656 4789999999999986

Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.

>PTZ00348 tyrosyl-tRNA synthetase; Provisional

Probab=100.00  E-value=7.5e-33  Score=266.34  Aligned_cols=177  Identities=15%  Similarity=0.182  Sum_probs=152.5

Q ss_pred             CccccccccHHHHHHhhCCCCCCcccccchhhhhccCCCCCCCCcccccCCCCcccccCCCCchHHHHHHHHHHHHhCCC
Q 027582            1 MVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYH   80 (221)
Q Consensus         1 ~~~l~r~~t~k~~~~~~g~~~~~~~g~l~YP~lqaa~~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~~laR~ia~~~n~~   80 (221)
                      |++++|.+|++++++.+| .+..++|+++||+|||+        ||+.+++|+   +.+|+|||..++|||+++++.+  
T Consensus       472 v~~ia~~~tl~r~~r~~g-~~~~~~s~~iYP~MQ~~--------Di~~L~~di---~~gG~DQRki~mlAre~~~~~~--  537 (682)
T PTZ00348        472 VIGIARKNLLSHVEELYG-GELRNAGQVIAALMRVA--------TALMLSASH---VISTSLDGGINEFAREYTKGRI--  537 (682)
T ss_pred             HHHHHHhccHHHHHHHhc-CCcccHHHHHHHHHHHH--------HHHhcCCCe---eecChhHHHHHHHHHHhccccc--
Confidence            467899999999999986 45569999999999999        999999974   7999999999999999999755  


Q ss_pred             CccccccCcccCCCCCCCCcCCCCCCCceecCCCHHHHHHHHhhccccCCcchhhhhhhcCCCccchhHHHHHhhhc---
Q 027582           81 KPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFL---  157 (221)
Q Consensus        81 ~p~~l~~~~lp~L~g~~~KMSkS~~~s~I~L~D~p~~I~~KI~k~A~td~~~~~~~~~~~~~~p~v~~~~~~l~~~~---  157 (221)
                      +|..++++++|+|.++..+|++|+++|+|+|.|++++|++||++ |||+++.        .+||.++.+-.++..+.   
T Consensus       538 ~~~~~~~~~~p~l~~~~~~~~~~s~~s~i~~~D~~~~i~~Ki~k-A~Cpp~~--------~~Npvl~~~~y~~~~~~~~~  608 (682)
T PTZ00348        538 ECIQALEGRVPALHRPGAAPAVLGADDVLYLDDNDMDIRRKIKK-AYSAPNE--------EANPVISVAQHLLAQQGALS  608 (682)
T ss_pred             cchhhcCCCCccccccccccCCCCCCCeeeecCCHHHHHHHHHh-CCCCCCC--------CCCcHHHHHHHHhcCCCeEE
Confidence            45556788999999777899999889999999999999999999 9998853        36998765433322221   


Q ss_pred             -C---------ChHhHHHHHHHHhcCCCChHHHHHHHHHHHHHHhHHHHHHHH
Q 027582          158 -E---------DDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARA  200 (221)
Q Consensus       158 -~---------~~~~~eel~~~y~~g~~~~~~lK~~lae~l~~~l~pire~~~  200 (221)
                       +         ...+++||+++|.+|++||+|||.+++++|+++|+|+|++++
T Consensus       609 i~R~e~~Gg~~~y~s~eeL~~dy~~g~lhP~DLK~av~~~l~~~l~pvr~~~~  661 (682)
T PTZ00348        609 IERGEANGGNVAYNTPEALVADCGSGALHPADLKAAVSQLLLDRSAAARALLS  661 (682)
T ss_pred             EecccccCCCeeeCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence             0         136899999999999999999999999999999999999997

>PRK05912 tyrosyl-tRNA synthetase; Validated

Probab=100.00  E-value=6e-33  Score=255.29  Aligned_cols=166  Identities=23%  Similarity=0.254  Sum_probs=139.3

Q ss_pred             ccccccHHHHHH------hhCCCCCCcccccchhhhhccCCCCCCCCccccc----CCCCcccccCCCCchHHHHHHHHH
Q 027582            4 VAKCVTYNKVVG------IFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSG----KDHLRCLIPCAIDQDPYFRMTRDV   73 (221)
Q Consensus         4 l~r~~t~k~~~~------~~g~~~~~~~g~l~YP~lqaa~~~~~~~~Dil~~----~ad~~~~vpvG~DQ~~h~~laR~i   73 (221)
                      +.+.+|++++.+      +++..++.++|+|+||+||||        |++.+    +++   ++|||.||++|++++||+
T Consensus       140 v~~~~~v~~m~~~~~~k~r~~~~~~is~~ef~Yp~LQa~--------D~l~l~~~~~~~---i~~gG~DQ~~ni~~grdl  208 (408)
T PRK05912        140 LGKHFTVNRMLERDDFKKRLREGQGISFTEFLYPLLQGY--------DFVALNKRYGCD---LQLGGSDQWGNILSGRDL  208 (408)
T ss_pred             HhhhccHHHHhhcchHHHHhccCCCCchhhhhhHHHHHh--------hHHHHhccCCCC---EEeccHHHHHHHHHHHHH
Confidence            567777777754      333235689999999999999        99998    774   799999999999999999


Q ss_pred             HHHhCCCCccccccCcccCCCCCCCCcCCCCCCCceecCC---CHHHHHHHHhhccccCCcchhhhhhhcCCCccchhHH
Q 027582           74 APRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTD---SAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPV  150 (221)
Q Consensus        74 a~~~n~~~p~~l~~~~lp~L~g~~~KMSkS~~~s~I~L~D---~p~~I~~KI~k~A~td~~~~~~~~~~~~~~p~v~~~~  150 (221)
                      |+|+|..++..++.|+|||++|  +|||||+ +|+|+|+|   +|+++++||++ + +              ++++++++
T Consensus       209 a~r~~~~~~~~l~~plL~~~~G--~KMsKS~-~naI~L~d~~tsp~~i~qki~~-~-~--------------D~~v~~~l  269 (408)
T PRK05912        209 QRRYGGKPQFGLTMPLLTGLDG--KKMGKSE-GNAVWLDEEKTSPYEMYQKWMN-I-S--------------DADVWRYL  269 (408)
T ss_pred             HHHhCCCCeEEEecCCcCCCCC--CcccCCC-CCceeCCCCCCCHHHHHHHHhc-C-C--------------hHHHHHHH
Confidence            9999987777788999999998  7999998 56999999   99999999999 5 2              23455555


Q ss_pred             HHHhhhcCChHhHHHHHHHHhcCCCChHHHHHHHHHHHHHHhHHHHHHHHHH
Q 027582          151 KYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAV  202 (221)
Q Consensus       151 ~~l~~~~~~~~~~eel~~~y~~g~~~~~~lK~~lae~l~~~l~pire~~~~~  202 (221)
                      .++.++  +.+++++++++|++|. +++++|+.||+.|+++++...+..+..
T Consensus       270 ~~~t~~--~~~ei~~l~~~~~~g~-~~~~~Kk~LA~~v~~~lhg~~~~~~a~  318 (408)
T PRK05912        270 KLLTFL--SLEEIEELEEELAEGP-NPREAKKVLAEEITALVHGEEAAEAAE  318 (408)
T ss_pred             HHHhcC--CHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHCCHHHHHHHH
Confidence            555554  6788999999998786 999999999999999999987765543

>PRK13354 tyrosyl-tRNA synthetase; Provisional

Probab=99.97  E-value=6.1e-32  Score=248.63  Aligned_cols=166  Identities=19%  Similarity=0.197  Sum_probs=139.5

Q ss_pred             ccccccHHHHHH------hhCCCCCCcccccchhhhhccCCCCCCCCccccc----CCCCcccccCCCCchHHHHHHHHH
Q 027582            4 VAKCVTYNKVVG------IFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSG----KDHLRCLIPCAIDQDPYFRMTRDV   73 (221)
Q Consensus         4 l~r~~t~k~~~~------~~g~~~~~~~g~l~YP~lqaa~~~~~~~~Dil~~----~ad~~~~vpvG~DQ~~h~~laR~i   73 (221)
                      +.+++|++++.+      +++..+++++|+|+||+||||        |++.+    +++   ++|||.||++|++++||+
T Consensus       138 v~~~~tv~~m~~~~~~~~R~~~~~~is~~ef~YpllQa~--------D~~~l~~~~~~~---iq~gG~DQ~~ni~~grdl  206 (410)
T PRK13354        138 YGKHFTVNRMLERDDVKSRLEREQGISFTEFFYPLLQAY--------DFVHLNRKEDVD---LQIGGTDQWGNILMGRDL  206 (410)
T ss_pred             HHhhccHHHHHhchHHHhhhccCCCCchhhhccHHHHhh--------hHHHHhccCCCC---EEEecHHHHHHHHHHHHH
Confidence            455556665543      443235678999999999999        99998    774   689999999999999999


Q ss_pred             HHHhCCCCccccccCcccCCCCCCCCcCCCCCCCceecCCC---HHHHHHHHhhccccCCcchhhhhhhcCCCccchhHH
Q 027582           74 APRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDS---AKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPV  150 (221)
Q Consensus        74 a~~~n~~~p~~l~~~~lp~L~g~~~KMSkS~~~s~I~L~D~---p~~I~~KI~k~A~td~~~~~~~~~~~~~~p~v~~~~  150 (221)
                      |+|+|..+|..++.|+|+|++|  .|||||.+ ++|+|+|+   |+++++||++ + +|                 +.++
T Consensus       207 ~~r~~~~~~~~lt~PlL~g~dG--~KMsKS~~-naI~L~d~~tsp~~i~qki~~-~-~D-----------------~~v~  264 (410)
T PRK13354        207 QRKLEGEEQFGLTMPLLEGADG--TKMGKSAG-GAIWLDPEKTSPYEFYQFWMN-I-DD-----------------RDVV  264 (410)
T ss_pred             HHHhCCCCceEeccCCccCCCC--CccCCCCC-CceeccCCCCCHHHHHHHHHc-C-Ch-----------------HHHH
Confidence            9999998898889999999999  49999986 49999999   9999999999 5 11                 2346


Q ss_pred             HHHhhhcC-ChHhHHHHHHHHhcCCCChHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 027582          151 KYLSFFLE-DDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVT  203 (221)
Q Consensus       151 ~~l~~~~~-~~~~~eel~~~y~~g~~~~~~lK~~lae~l~~~l~pire~~~~~~  203 (221)
                      .|+.+|+. +.+++++++++|.+|. +++++|+.||+.|++++++.++..+...
T Consensus       265 ~~l~~~t~l~~~ei~~l~~~~~~~~-~~~~~Kk~LA~~v~~~vhg~~~~~~a~~  317 (410)
T PRK13354        265 KYLKLFTDLSPDEIDELEAQLETEP-NPRDAKKVLAEEITKFVHGEEAAEEAEK  317 (410)
T ss_pred             HHHHHHhCCCHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHCCHHHHHHHHH
Confidence            78888864 6789999999999874 5999999999999999999888766543

>TIGR00234 tyrS tyrosyl-tRNA synthetase

Probab=99.90  E-value=5.2e-24  Score=194.39  Aligned_cols=148  Identities=22%  Similarity=0.158  Sum_probs=120.8

Q ss_pred             cccccccHHHHHHhhCC----CCCCcccccchhhhhccCCCCCCCCcccccCCCCcccccCCCCchHHHHHHHHHHHHhC
Q 027582            3 KVAKCVTYNKVVGIFGF----TGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIG   78 (221)
Q Consensus         3 ~l~r~~t~k~~~~~~g~----~~~~~~g~l~YP~lqaa~~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~~laR~ia~~~n   78 (221)
                      ++++.+|++++.++.++    .++.++++|+||+|||+        |++.+++|   ++|+|.||++|++.+|++|+++|
T Consensus       134 ~~~~~~tv~~m~~~~~~~~R~~~~is~~ef~YpllQa~--------D~~~l~~d---i~~gG~DQ~~ni~~g~dLar~~~  202 (377)
T TIGR00234       134 DLGKIFSVNRMLRRDAFSSRLERGISLSEFIYPLLQAY--------DFVYLNVD---LQIGGSDQWGNIRKGRDLIRRNL  202 (377)
T ss_pred             HHhCceEHHHHHcccHHHHHHhcCCCchhhhhHHHHHH--------HHHHHcCC---eeEecchhHHHHHHHHHHHHHhc
Confidence            36788888888876543    24689999999999999        99999996   69999999999999999999999


Q ss_pred             CCCccccccCcccCCCCCCCCcCCCCC----------CCceecCCCHHHHHHHHhhccccCCcchhhhhhhcCCCccchh
Q 027582           79 YHKPALIESSFFPALQGETGKMSASDP----------NSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDI  148 (221)
Q Consensus        79 ~~~p~~l~~~~lp~L~g~~~KMSkS~~----------~s~I~L~D~p~~I~~KI~k~A~td~~~~~~~~~~~~~~p~v~~  148 (221)
                      ...+..+..+++++++|  .|||||.+          +++|++.|+|+++.+||++ |||+..                 
T Consensus       203 ~~~~~~~t~pLl~~~dg--~KmgKS~~~~i~l~~~~~~~~i~~~d~~D~~~~Ki~k-~~t~~~-----------------  262 (377)
T TIGR00234       203 PSLGFGLTVPLLTPADG--EKMGKSGGGAVSLDEGKYDFYQFWINTPDEDVKKILK-LFTFLG-----------------  262 (377)
T ss_pred             CCCceeeceeeecCCCC--CCccCCCCCcccCCccHhhhhhhhcCCcHHHHHHHHH-HcCCCc-----------------
Confidence            76666677899999997  69999953          3678888889999999999 999754                 


Q ss_pred             HHHHHhhhcCChHhHHHHHHHHhcCCCChHHHHHHHHHHHHHHhHHH
Q 027582          149 PVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERH  195 (221)
Q Consensus       149 ~~~~l~~~~~~~~~~eel~~~y~~g~~~~~~lK~~lae~l~~~l~pi  195 (221)
                                 .+++++|.+  ..+ -++...|..+|..+++.++.-
T Consensus       263 -----------~~ei~~l~~--~~~-~~~~~~q~~la~ei~~~vhg~  295 (377)
T TIGR00234       263 -----------LEEIEALVE--LKG-PSPREVKENLAKEITKYVHGE  295 (377)
T ss_pred             -----------HHHHHHHHH--hcc-cCHHHHHHHHHHHHHHHhcCH
Confidence                       235566644  223 578889999998888887653

This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples.

>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]

Probab=99.83  E-value=4.7e-20  Score=168.67  Aligned_cols=166  Identities=22%  Similarity=0.218  Sum_probs=127.1

Q ss_pred             cccccccHHHHHHhhC------CCCCCcccccchhhhhccCCCCCCCCcccccCCCCcccccCCCCchHHHHHHHHHHHH
Q 027582            3 KVAKCVTYNKVVGIFG------FTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPR   76 (221)
Q Consensus         3 ~l~r~~t~k~~~~~~g------~~~~~~~g~l~YP~lqaa~~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~~laR~ia~~   76 (221)
                      ++.+++|++++.++..      ...++++.+|+||+|||+        |++.+++|   +..+|.||+.++.++|++++|
T Consensus       135 ~~g~~~sv~rml~~d~~~~R~~~~~~is~~Ef~YpLmQay--------D~~~L~~d---lq~GG~DQ~~ni~~grdl~rr  203 (401)
T COG0162         135 DVGKHFSVNRMLRRDDVKKRLEREQGISFTEFNYPLLQAY--------DFVYLNKD---LQLGGSDQWGNILAGRDLIRR  203 (401)
T ss_pred             HHHhHccHHHHHHhhhHHHHhccCCCCchhhhhhHHHHHH--------HHHHHccc---hhcCChHHHHHHHHHHHHHHH
Confidence            4568889998887532      223589999999999999        99999997   589999999999999999999


Q ss_pred             hCCCCccccccCcccCCCCCCCCcCCCCCCCceec-CCC--HHHHHHHHhhccccCCcchhhhhhhcCCCccchhHHHHH
Q 027582           77 IGYHKPALIESSFFPALQGETGKMSASDPNSAIYV-TDS--AKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYL  153 (221)
Q Consensus        77 ~n~~~p~~l~~~~lp~L~g~~~KMSkS~~~s~I~L-~D~--p~~I~~KI~k~A~td~~~~~~~~~~~~~~p~v~~~~~~l  153 (221)
                      +|..++.++++|+|+|++|  +|||||..| ++++ .+.  |-++.+++++ .  +    .            ..+..|+
T Consensus       204 ~g~~~~~~lt~PLL~~ldG--~KmgKs~~~-a~~~~s~~~Sp~~~yq~~~~-i--~----D------------~~~~~~~  261 (401)
T COG0162         204 LGQKKVVGLTTPLLTGLDG--KKMGKSEGG-AVWLDSEKTSPYDFYQYWMN-I--E----D------------ADVKRFL  261 (401)
T ss_pred             hCCCCeEEEEeccccCCCC--CcccccCCC-ceEccCCCCCcHhhhhcHhc-C--c----H------------HHHHHHH
Confidence            9999999999999999999  499999865 3333 333  5666666666 2  0    0            1223444


Q ss_pred             hhhcC-ChHhHHHHHHHHhcCCCChHHHHHHHHHHHHHHhHHHHHHHHHH
Q 027582          154 SFFLE-DDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAV  202 (221)
Q Consensus       154 ~~~~~-~~~~~eel~~~y~~g~~~~~~lK~~lae~l~~~l~pire~~~~~  202 (221)
                      ..++. ..+++++|.+....+. ++.+.|+.||..++...+.-...++.+
T Consensus       262 ~~~t~l~~~eI~~i~~~~~~~~-~~r~~k~~LA~e~~~~~hG~~~a~~a~  310 (401)
T COG0162         262 KLLTFLSLEEIEEIEKYVLKGP-EPREAKKLLAKEVTKLVHGEEAAEAAE  310 (401)
T ss_pred             HHhCcCChHHHHHHHHHhhcCC-ChHHHHHHHHHHhhHhhcCHHHHHHHH
Confidence            44432 2368888888777665 888999999999999888866555543

>cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase

Probab=98.96  E-value=3.2e-10  Score=89.87  Aligned_cols=65  Identities=17%  Similarity=0.072  Sum_probs=57.0

Q ss_pred             hhhhhccCCCCCCCCcccccCCCCcccccCCCCchHHHHHHHHHHHHhCCC-CccccccCcccCCCCCCCCcCCCC
Q 027582           30 FPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYH-KPALIESSFFPALQGETGKMSASD  104 (221)
Q Consensus        30 YP~lqaa~~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~~laR~ia~~~n~~-~p~~l~~~~lp~L~g~~~KMSkS~  104 (221)
                      ||+.|+|        |++.+.....+++++|.||.+|++..+++++++|.. +|..++.++|.+.+|  +|||||.
T Consensus        78 y~~~~~a--------~~~~~~~~~~~i~~~G~Dq~~h~~~~~~i~~~~~~~~~p~~~~~~~l~~~~g--~KmSks~  143 (143)
T cd00802          78 YMFLQAA--------DFLLLYETECDIHLGGSDQLGHIELGLELLKKAGGPARPFGLTFGRVMGADG--TKMSKSK  143 (143)
T ss_pred             HHHHHHH--------HHHHHhhCCcEEEEechhHHHHHHHHHHHHHHhCCCCCceEEEeCCeECCCC--CcCCCCC
Confidence            9999999        998877744457999999999999999999999854 688888999999876  6999994

Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.

>KOG2623 consensus Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]

Probab=98.84  E-value=7.1e-09  Score=93.97  Aligned_cols=161  Identities=15%  Similarity=0.099  Sum_probs=111.0

Q ss_pred             ccccccHHHHHHhhCCCCCCcccccchhhhhccCCCCCCCCcccc-cCCCCcccccCCCCchHHHHHHHHHHHHhCCC--
Q 027582            4 VAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFS-GKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYH--   80 (221)
Q Consensus         4 l~r~~t~k~~~~~~g~~~~~~~g~l~YP~lqaa~~~~~~~~Dil~-~~ad~~~~vpvG~DQ~~h~~laR~ia~~~n~~--   80 (221)
                      +..|..-..++.+..-.++.++.+|+|-+|||.        |.+. |+..=.|++.+|.||+.|++.+-|+.+|+-..  
T Consensus       185 vgsMLar~SV~~RLes~~GlSftEFtYQ~lQAY--------Dfy~L~~~~g~~~QlGGsDQwGNitaG~dlI~ki~~~~~  256 (467)
T KOG2623|consen  185 VGSMLARDSVKSRLESPNGLSFTEFTYQLLQAY--------DFYHLYENYGCRFQLGGSDQWGNITAGTDLIRKIMPIQA  256 (467)
T ss_pred             HHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHH--------hHHHHHHhcCeeEEecccccccccchHHHHHHHhccccc
Confidence            334444444555554355689999999999999        9884 33322258899999999999999999998642  


Q ss_pred             CccccccCcccCCCCCCCCcCCCCCCCceecCCC---HHHHHHHHhhccccCCcchhhhhhhcCCCccchhHHHHHhhhc
Q 027582           81 KPALIESSFFPALQGETGKMSASDPNSAIYVTDS---AKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFL  157 (221)
Q Consensus        81 ~p~~l~~~~lp~L~g~~~KMSkS~~~s~I~L~D~---p~~I~~KI~k~A~td~~~~~~~~~~~~~~p~v~~~~~~l~~~~  157 (221)
                      .+.-+..|+|.+-+|  .|..||.+| +|||+-+   |-.+++-.-+ +-               +-+++-++.++.++ 
T Consensus       257 ~vfGlT~PLlTsstG--~KlGKSaGn-AvWLdp~~tspy~lYQfF~~-~p---------------Dd~v~k~LklfTfl-  316 (467)
T KOG2623|consen  257 FVFGLTFPLLTSSTG--AKLGKSAGN-AVWLDPSKTSPYHLYQFFAS-LP---------------DDDVEKFLKLFTFL-  316 (467)
T ss_pred             ceeeeeeeeEecCcc--hhhccCCCc-eEEecCccCCcHHHHHHHHh-Cc---------------hhHHHHHHHHHhcC-
Confidence            344466788888888  699999987 9999864   8888887777 31               11233333444444 


Q ss_pred             CChHhHHHHHHHHhcCCCChHHHHHHHHHHHHHHhHH
Q 027582          158 EDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVER  194 (221)
Q Consensus       158 ~~~~~~eel~~~y~~g~~~~~~lK~~lae~l~~~l~p  194 (221)
                       +-+++++|.+.-.+. -...-.-+.||+.+..+++.
T Consensus       317 -~l~eI~~I~~~H~k~-P~~r~aQ~~LA~eVTr~VHG  351 (467)
T KOG2623|consen  317 -PLEEIKQILEEHRKE-PSQRIAQKLLAAEVTRMVHG  351 (467)
T ss_pred             -CHHHHHHHHHHHhcC-hhhhhHHHHHHHHHHHHHcc
Confidence             455677666655432 23444567788888888776

>cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase

Probab=98.37  E-value=3.3e-07  Score=79.21  Aligned_cols=104  Identities=12%  Similarity=0.015  Sum_probs=81.5

Q ss_pred             cccccHHHHHHhhCCCCCCcccccchhhhhccCCCCCCCCcccccCCCCcccccCCCCchHHHHHHHHHHHHhCCCCccc
Q 027582            5 AKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPAL   84 (221)
Q Consensus         5 ~r~~t~k~~~~~~g~~~~~~~g~l~YP~lqaa~~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~~laR~ia~~~n~~~p~~   84 (221)
                      .|...++++.+..-. .+  -|..+|++.+++        |...++.   ++|+.|.|+..|...-+.+++.||.+.|..
T Consensus        84 ~r~~~y~~~~~~L~~-~g--dg~ptY~~a~~v--------DD~~~~i---thViRG~D~~~~t~~q~~l~~aLg~~~p~~  149 (239)
T cd00808          84 ERLEIYRKYAEKLLE-KG--DGFPTYHLANVV--------DDHLMGI---THVIRGEEHLSSTPKQILLYEALGWEPPKF  149 (239)
T ss_pred             CCHHHHHHHHHHHHH-cC--CCCcccccHHHH--------hHHhcCC---CEEEEChhhhhChHHHHHHHHHcCCCCCce
Confidence            355566666554311 11  389999999999        8888988   789999999999999999999999999998


Q ss_pred             cccCcccCCCCCCCCcCCCCCCCceecC----CCHHHHHHHHhh
Q 027582           85 IESSFFPALQGETGKMSASDPNSAIYVT----DSAKAIKNKINK  124 (221)
Q Consensus        85 l~~~~lp~L~g~~~KMSkS~~~s~I~L~----D~p~~I~~KI~k  124 (221)
                      .+.+++++.+|  .||||+..+.+|.-.    -+|+.|..-+..
T Consensus       150 ~h~pll~~~~g--~KLSKR~~~~~l~~lr~~G~~p~ai~~~l~~  191 (239)
T cd00808         150 AHLPLILNPDG--KKLSKRKGDTSISDYREEGYLPEALLNYLAL  191 (239)
T ss_pred             EeeccccCCCC--CcccCCCCCccHHHHHHCCCCHHHHHHHHHH
Confidence            88899999988  699999876444322    347777666655

Discriminating Glutamyl-tRNA synthetase (GluRS) catalytic core domain . The discriminating form of GluRS is only found in bacteria and cellular organelles. GluRS is a monomer that attaches Glu to the appropriate tRNA. Like other class I tRNA synthetases, GluRS aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.

>PRK00750 lysK lysyl-tRNA synthetase; Reviewed

Probab=97.83  E-value=3.2e-05  Score=73.69  Aligned_cols=56  Identities=23%  Similarity=0.348  Sum_probs=48.0

Q ss_pred             ccccCCCCchH-HHHHHHHHHH-HhCCCCccccccCcccCCCCCCCCcCCCCCCCceecCC
Q 027582           55 CLIPCAIDQDP-YFRMTRDVAP-RIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTD  113 (221)
Q Consensus        55 ~~vpvG~DQ~~-h~~laR~ia~-~~n~~~p~~l~~~~lp~L~g~~~KMSkS~~~s~I~L~D  113 (221)
                      ++.|.|.||.. +..+++.+++ .+|.+.|..+.+.++..-+|  +|||||.+| .|.+.|
T Consensus       236 d~e~~GkDh~~~s~~~~~~i~~~ilg~~~P~~~~y~~v~~~~G--~KMSKSkGN-~i~~~d  293 (510)
T PRK00750        236 DFEPFGKDHASASYDTSKKIAREILGGEPPEPFVYELFLDKKG--EKISKSKGN-VITIED  293 (510)
T ss_pred             CEEeeCcccCcchHHHHHHHHHHHcCCCCCeeeeeeeEEeCCC--CcccccCCC-ccCHHH
Confidence            46899999999 9999999999 99998898887777776555  799999875 887765

>cd00418 GlxRS_core catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase

Probab=97.15  E-value=0.00049  Score=59.26  Aligned_cols=86  Identities=13%  Similarity=0.102  Sum_probs=63.8

Q ss_pred             chhhhhccCCCCCCCCcccccCCCCcccccCCCCchHHHHHHHHHHHHhCCCCccccccCcccCCCCCCCCcCCCCCCCc
Q 027582           29 SFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSA  108 (221)
Q Consensus        29 ~YP~lqaa~~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~~laR~ia~~~n~~~p~~l~~~~lp~L~g~~~KMSkS~~~s~  108 (221)
                      .||..+=|.+.    .|.+ .+.   |+|..|.|+..+...-+.+++.+|.++|...|.++|.+.+|  +||||++.+.+
T Consensus        93 g~p~Y~la~vv----DD~~-~gI---ThViRG~D~l~st~~q~~l~~~Lg~~~P~~~H~pll~~~~g--~KLSKr~~~~~  162 (230)
T cd00418          93 GYPLYNFVHPV----DDAL-MGI---THVLRGEDHLDNTPIQDWLYEALGWEPPRFYHFPRLLLEDG--TKLSKRKLNTT  162 (230)
T ss_pred             CCccccccccc----cccc-cCC---CEEEECHhhhhchHHHHHHHHHcCCCCCeEEEeeeeeCCCC--CCccCcCCCcC
Confidence            45555555322    2554 444   68999999999999999999999999999999999999887  69999987544


Q ss_pred             eecC----CCHHHHHHHHhh
Q 027582          109 IYVT----DSAKAIKNKINK  124 (221)
Q Consensus       109 I~L~----D~p~~I~~KI~k  124 (221)
                      |.=.    -.|+.|..-+..
T Consensus       163 i~~~r~~G~~p~ai~~~l~~  182 (230)
T cd00418         163 LRALRRRGYLPEALRNYLAL  182 (230)
T ss_pred             HHHHHHCCCcHHHHHHHHHH
Confidence            4222    346666655554

Glutamyl-tRNA synthetase(GluRS)/Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Glu or Gln, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea, cellular organelles, and some bacteria lack GlnRS. In these cases, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. The discriminating form of GluRS differs from GlnRS and the non-discriminating form of GluRS in their C-terminal anti-codon bind

>cd00674 LysRS_core_class_I catalytic core domain of class I lysyl tRNA synthetase

Probab=97.01  E-value=0.00037  Score=63.60  Aligned_cols=59  Identities=27%  Similarity=0.373  Sum_probs=46.9

Q ss_pred             cCCCCcccccCCCCchHH---HHHHHHHHH-HhCCCCccccccCcccCCCCCCCCcCCCCCCCceecCC
Q 027582           49 GKDHLRCLIPCAIDQDPY---FRMTRDVAP-RIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTD  113 (221)
Q Consensus        49 ~~ad~~~~vpvG~DQ~~h---~~laR~ia~-~~n~~~p~~l~~~~lp~L~g~~~KMSkS~~~s~I~L~D  113 (221)
                      ++.|   +-|+|.||..|   +...+.+|+ .||.+.|..+...++- +.|. +|||||.+| .|.+.|
T Consensus       226 l~Vd---~E~~GkDh~~~ggs~~~~~~i~~~ilg~~~P~~~~ye~V~-l~gg-~KMSKSkGn-vI~~~d  288 (353)
T cd00674         226 LGVD---FEPFGKDHASAGGSYDTGKEIAREIFGGEPPVPVMYEFIG-LKGG-GKMSSSKGN-VITPSD  288 (353)
T ss_pred             cCCC---EEeeCccccccccHHHHHHHHHHHHhCCCCCeEEEeeeEE-eCCC-CccCCCCCC-cCCHHH
Confidence            5554   68999999999   999999999 9999888776666653 5553 699999875 777654

Class I lysyl tRNA synthetase (LysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The class I LysRS is found only in archaea and some bacteria and has evolved separately from class II LysRS, as the two do not share structural or sequence similarity.

>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]

Probab=96.54  E-value=0.004  Score=57.77  Aligned_cols=128  Identities=16%  Similarity=0.094  Sum_probs=82.1

Q ss_pred             HHHhCCCCccccc--cCc-ccCCCCCCCCcCCCCCCCceecCCCHHHHHHHHhhccccCCcc-----hhhh-hhhcCCCc
Q 027582           74 APRIGYHKPALIE--SSF-FPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQE-----SVEL-HRKLGANL  144 (221)
Q Consensus        74 a~~~n~~~p~~l~--~~~-lp~L~g~~~KMSkS~~~s~I~L~D~p~~I~~KI~k~A~td~~~-----~~~~-~~~~~~~p  144 (221)
                      .+.++..-|.+..  ..+ =-+..|  .+||+|+++|.|.+.+.+..|..|++. +||....     .+.+ .......+
T Consensus       207 ~~~~~lt~PLL~~ldG~KmgKs~~~--a~~~~s~~~Sp~~~yq~~~~i~D~~~~-~~~~~~t~l~~~eI~~i~~~~~~~~  283 (401)
T COG0162         207 KKVVGLTTPLLTGLDGKKMGKSEGG--AVWLDSEKTSPYDFYQYWMNIEDADVK-RFLKLLTFLSLEEIEEIEKYVLKGP  283 (401)
T ss_pred             CCeEEEEeccccCCCCCcccccCCC--ceEccCCCCCcHhhhhcHhcCcHHHHH-HHHHHhCcCChHHHHHHHHHhhcCC
Confidence            3445555565543  222 223333  699999999999999999999999999 9997651     1111 11111111


Q ss_pred             cchhHHHHHhh------hcC--ChHhHHHHHHHHhcC---CCChHHHHH-----HHHHHHHHHhHHHHHHHHHHhH
Q 027582          145 EVDIPVKYLSF------FLE--DDAELEHIKKEYGAG---GMLTGEVKQ-----RLAKVLTELVERHQVARAAVTD  204 (221)
Q Consensus       145 ~v~~~~~~l~~------~~~--~~~~~eel~~~y~~g---~~~~~~lK~-----~lae~l~~~l~pire~~~~~~~  204 (221)
                      +...+-.++..      +..  ..+..++.+..|.+|   .+++.++|.     .++..+...|.|.|........
T Consensus       284 ~~r~~k~~LA~e~~~~~hG~~~a~~a~~~~~~~F~~g~~~~l~~~dlk~~~~~~~~~~lv~~~L~psr~earr~i~  359 (401)
T COG0162         284 EPREAKKLLAKEVTKLVHGEEAAEAAEEEFEKLFSEGLPENLPPADLKQKLEDGLVDLLVDAGLAPSRSEARRLIQ  359 (401)
T ss_pred             ChHHHHHHHHHHhhHhhcCHHHHHHHHHHHHHHHhcCCcccCCHHHHhhhhHHHHHHHHHHhCCcccHHHHHhhcc
Confidence            11111111111      111  135688899999988   899999999     8888888889999988776443

>PRK01406 gltX glutamyl-tRNA synthetase; Reviewed

Probab=95.52  E-value=0.037  Score=52.50  Aligned_cols=66  Identities=15%  Similarity=0.115  Sum_probs=53.0

Q ss_pred             ccccCCCCchHHHHHHHHHHHHhCCCCccccccCcccCCCCCCCCcCCCCCCCceecCC------CHHHHHHHHhh
Q 027582           55 CLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTD------SAKAIKNKINK  124 (221)
Q Consensus        55 ~~vpvG~DQ~~h~~laR~ia~~~n~~~p~~l~~~~lp~L~g~~~KMSkS~~~s~I~L~D------~p~~I~~KI~k  124 (221)
                      ++|..|.||..|.-.-..+.+.+|.+.|...|.+++.+++|  +||||.++  .+.+.+      .|+.+..-+.+
T Consensus       209 thvIrG~d~~~~t~~q~~l~~alG~~~p~~~H~pli~~~~g--~klSKR~g--~~~l~~l~~~G~~p~Ai~n~l~~  280 (476)
T PRK01406        209 THVIRGEDHLSNTPKQILLYEALGWEVPVFAHLPLILGPDG--KKLSKRHG--ATSVEQYRDMGYLPEALLNYLAL  280 (476)
T ss_pred             CEEEECchhhcCHHHHHHHHHHhCCCCCeEEEeeeeeCCCC--CcccCcCC--ccCHHHHHHCCCCHHHHHHHHHH
Confidence            57889999999999999999999998898888888888888  69999976  444432      46666655544

>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases

Probab=94.90  E-value=0.02  Score=51.00  Aligned_cols=54  Identities=20%  Similarity=0.079  Sum_probs=35.8

Q ss_pred             cccCCCCch-HHHHHHHHHHHHhCCC-Cc-cccccCcccCCCCCCCCcCCCCCCCceecC
Q 027582           56 LIPCAIDQD-PYFRMTRDVAPRIGYH-KP-ALIESSFFPALQGETGKMSASDPNSAIYVT  112 (221)
Q Consensus        56 ~vpvG~DQ~-~h~~laR~ia~~~n~~-~p-~~l~~~~lp~L~g~~~KMSkS~~~s~I~L~  112 (221)
                      +..+|.||. +|++...-.+..++.. .| .++.+.++-.-.|  +|||||.+| .|.+.
T Consensus       229 i~~~G~D~~~~h~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g--~KmSKS~gn-~v~~~  285 (312)
T cd00668         229 WHLIGKDILRGWANFWITMLVALFGEIPPKNLLVHGFVLDEGG--QKMSKSKGN-VIDPS  285 (312)
T ss_pred             EEEEecchhhhHHHHHHHHHHHhcCCCCcceeEECcEEEcCCC--ccccccCCC-cCCHH
Confidence            568999999 8877666666656543 23 3334566653333  699999986 77664

Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.

>TIGR00464 gltX_bact glutamyl-tRNA synthetase, bacterial family

Probab=94.87  E-value=0.27  Score=46.65  Aligned_cols=66  Identities=15%  Similarity=0.132  Sum_probs=53.5

Q ss_pred             ccccCCCCchHHHHHHHHHHHHhCCCCccccccCcccCCCCCCCCcCCCCCCCceecCC------CHHHHHHHHhh
Q 027582           55 CLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTD------SAKAIKNKINK  124 (221)
Q Consensus        55 ~~vpvG~DQ~~h~~laR~ia~~~n~~~p~~l~~~~lp~L~g~~~KMSkS~~~s~I~L~D------~p~~I~~KI~k  124 (221)
                      ++|..|.||..|...-..+.+.+|.+.|...|.+++.+++|  +||||..+  .+.|.+      .|+.+..-+..
T Consensus       199 thvIrG~d~~~~t~~~~~l~~aLg~~~p~~~H~p~l~~~~g--~kLSKR~g--~~~l~~l~~~g~~p~a~~~~~~~  270 (470)
T TIGR00464       199 THVIRGEDHISNTPKQILIYQALGWKIPVFAHLPMILDEDG--KKLSKRDG--ATSIMQFKEQGYLPEALINYLAL  270 (470)
T ss_pred             CEEEECchhhcCHHHHHHHHHHcCCCCCeEEEEeeeecCCC--ccccccCC--CccHHHHHHCCCCHHHHHHHHHH
Confidence            57889999999999999999999998898888888888888  69999976  444432      46666666655

The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the bacterial and mitochondrial forms of the enzyme. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu). This model is highly specific. Proteins with positive scores below the trusted cutoff may be fragments rather than full-length sequences.

>PRK01611 argS arginyl-tRNA synthetase; Reviewed

Probab=94.82  E-value=0.021  Score=54.51  Aligned_cols=59  Identities=20%  Similarity=0.306  Sum_probs=42.5

Q ss_pred             cccCCCCchHHHHHHHHHHHHhCCCCcc---ccc--cCcccCCCCCCCCcCCCCCCCceecCCCHHH
Q 027582           56 LIPCAIDQDPYFRMTRDVAPRIGYHKPA---LIE--SSFFPALQGETGKMSASDPNSAIYVTDSAKA  117 (221)
Q Consensus        56 ~vpvG~DQ~~h~~laR~ia~~~n~~~p~---~l~--~~~lp~L~g~~~KMSkS~~~s~I~L~D~p~~  117 (221)
                      +-.+|.||..|+.-...+++.+|...+.   ++|  ..++-+=+|  +|||||.+| .|.+.|=-++
T Consensus       276 i~V~g~~q~~hf~~~~~~~~~lg~~~~~~~~~~h~~~glv~~~~g--~KMSkR~Gn-~i~l~dll~~  339 (507)
T PRK01611        276 IYVVGADHHGHFKRLKAALKALGYDPDALEVLLHQMVGLVRGGEG--VKMSTRAGN-VVTLDDLLDE  339 (507)
T ss_pred             EEEECCChHHHHHHHHHHHHHcCCCcccceEEEEEEEEeeECCCC--CcccCCCCc-eeEHHHHHHH
Confidence            4489999999999999999999986442   233  234434344  699999986 8877654444

>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed

Probab=94.54  E-value=0.027  Score=57.44  Aligned_cols=56  Identities=25%  Similarity=0.109  Sum_probs=39.4

Q ss_pred             ccCCCCcccccCCCCch---HHHHHHHHHHHHhCCCCcc-ccccCcccCCCCCCCCcCCCCCCCcee
Q 027582           48 SGKDHLRCLIPCAIDQD---PYFRMTRDVAPRIGYHKPA-LIESSFFPALQGETGKMSASDPNSAIY  110 (221)
Q Consensus        48 ~~~ad~~~~vpvG~DQ~---~h~~laR~ia~~~n~~~p~-~l~~~~lp~L~g~~~KMSkS~~~s~I~  110 (221)
                      .+.+|   +...|.||.   .|-.+-..++- +|.+.+. ++.+.++...+|  +|||||.+| .|.
T Consensus       543 ~~P~D---l~~~G~Di~r~Wf~~~l~~~~~~-~g~~P~k~vl~HG~vld~~G--~KMSKSlGN-vId  602 (912)
T PRK05743        543 GYPAD---LYLEGSDQHRGWFQSSLLTSVAT-RGKAPYKQVLTHGFTVDGKG--RKMSKSLGN-VID  602 (912)
T ss_pred             CCCce---EEEecccccchHHHHHHHHHHHh-cCCCccceeEEeeeEECCCC--CCCCCCCCC-cCC
Confidence            35565   578999997   55666666665 6654453 445788888787  799999987 554

>PRK14895 gltX glutamyl-tRNA synthetase; Provisional

Probab=94.28  E-value=0.097  Score=50.14  Aligned_cols=121  Identities=15%  Similarity=0.177  Sum_probs=81.0

Q ss_pred             ccccCCCCchHHHHHHHHHHHHhCCCCccccccCcccCCCCCCCCcCCCCCCCcee-c---CCCHHHHHHHHhhccccCC
Q 027582           55 CLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIY-V---TDSAKAIKNKINKYAFSGG  130 (221)
Q Consensus        55 ~~vpvG~DQ~~h~~laR~ia~~~n~~~p~~l~~~~lp~L~g~~~KMSkS~~~s~I~-L---~D~p~~I~~KI~k~A~td~  130 (221)
                      ++|..|.||..|.-.-..+.+.+|...|...|.++|.+++|  +||||..+...|. +   -=.|+.|..-+.....+.+
T Consensus       198 thVIRG~d~~~~t~~q~~l~~aLG~~~p~~~H~plv~~~~g--~KLSKR~g~~~i~~~r~~G~~Peai~n~la~LG~s~~  275 (513)
T PRK14895        198 THIIRGDDHLTNAARQLAIYQAFGYAVPSMTHIPLIHGADG--AKLSKRHGALGIEAYKDMGYLPESLCNYLLRLGWSHG  275 (513)
T ss_pred             CEEEECchHhhhHHHHHHHHHHcCCCCCeEEEEEeEEcCCC--CccccccCchhHHHHHHCCCCHHHHHHHHHHhCCCCC
Confidence            57889999999999999999999999999999999999988  7999998743332 1   1237777777664222211


Q ss_pred             cchhhhhhhcCCCccchhHHHHHhhhc----------CChHhHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 027582          131 QESVELHRKLGANLEVDIPVKYLSFFL----------EDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTE  190 (221)
Q Consensus       131 ~~~~~~~~~~~~~p~v~~~~~~l~~~~----------~~~~~~eel~~~y~~g~~~~~~lK~~lae~l~~  190 (221)
                                  +.++..+-.++..|.          .+.+.+..+...|-. .+...++...+...+.+
T Consensus       276 ------------~~e~~~~~el~~~F~~~~v~~s~~~FD~~KL~wlN~~yi~-~l~~~el~~~~~~~l~~  332 (513)
T PRK14895        276 ------------DDEIISMTQAIDWFNLDSLGKSPSKLDFAKMNSLNAHYLR-MLDNDSLTSKTVEILEQ  332 (513)
T ss_pred             ------------CcCCCCHHHHHhhCCHHhCcCCcCcCCHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHH
Confidence                        111212222233221          045678888888864 47788877766665543

>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases

Probab=94.09  E-value=0.036  Score=50.96  Aligned_cols=55  Identities=20%  Similarity=0.104  Sum_probs=33.4

Q ss_pred             cccCCCCchHHHHHH-HHHHHHhCCCCc--cccccCcccCCCCCCCCcCCCCCCCceecCC
Q 027582           56 LIPCAIDQDPYFRMT-RDVAPRIGYHKP--ALIESSFFPALQGETGKMSASDPNSAIYVTD  113 (221)
Q Consensus        56 ~vpvG~DQ~~h~~la-R~ia~~~n~~~p--~~l~~~~lp~L~g~~~KMSkS~~~s~I~L~D  113 (221)
                      +...|.||...+-.. --.+..+....|  .++.+.++.+++|  +|||||.+| .|.+.|
T Consensus       299 ~~~~G~D~~~~h~~~~l~~~~~~~g~~p~~~v~~hg~v~~~~g--~KMSKS~Gn-~v~~~d  356 (382)
T cd00817         299 LLVTGHDIIFFWVARMIMRGLKLTGKLPFKEVYLHGLVRDEDG--RKMSKSLGN-VIDPLD  356 (382)
T ss_pred             eeeeecCcCchHHHHHHHHHHHhhCCCchHHeEeeeeEECCCC--CCccccCCC-CCCHHH
Confidence            468899997543322 222222222234  4455778877777  799999986 776643

Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.

>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases

Probab=93.79  E-value=0.047  Score=49.42  Aligned_cols=53  Identities=26%  Similarity=0.158  Sum_probs=34.0

Q ss_pred             cccCCCCch---HHHHHHHHHHHHhCCCCc-cccccCcccCCCCCCCCcCCCCCCCceecC
Q 027582           56 LIPCAIDQD---PYFRMTRDVAPRIGYHKP-ALIESSFFPALQGETGKMSASDPNSAIYVT  112 (221)
Q Consensus        56 ~vpvG~DQ~---~h~~laR~ia~~~n~~~p-~~l~~~~lp~L~g~~~KMSkS~~~s~I~L~  112 (221)
                      +...|.||.   -|..+..-++ -.+...| .++.+.++...+|  +|||||.+| .|.+.
T Consensus       255 ~~~~GkDii~~wf~~~~~~~~~-~~~~~p~~~~~~hg~~~~~~g--~KmSKS~gn-~i~~~  311 (338)
T cd00818         255 FILEGSDQTRGWFYSLLLLSTA-LFGKAPYKNVIVHGFVLDEDG--RKMSKSLGN-YVDPQ  311 (338)
T ss_pred             EEeecchHHhHHHHHHHHHHHH-hcCCCccceEEEEeeEECCCC--CCCCCCCCC-cCCHH
Confidence            467899997   4545544444 3343332 3445677766677  699999987 77764

Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.

>cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases

Probab=93.50  E-value=0.078  Score=44.69  Aligned_cols=45  Identities=20%  Similarity=0.245  Sum_probs=35.2

Q ss_pred             cCCCCchHHHHHHHHHHHHhCCC-Cccc--cccCcccCCCCCCCCcCCCC
Q 027582           58 PCAIDQDPYFRMTRDVAPRIGYH-KPAL--IESSFFPALQGETGKMSASD  104 (221)
Q Consensus        58 pvG~DQ~~h~~laR~ia~~~n~~-~p~~--l~~~~lp~L~g~~~KMSkS~  104 (221)
                      .+|.||..|+.-.+.+++.+|.+ .|..  +..++|..-+|  +||||..
T Consensus       164 v~g~~~~~~~~~~~~~~~~lg~~~~~~~~h~~~~~v~~~~~--~kmS~R~  211 (212)
T cd00671         164 VVGADHHGHFKRLFAALELLGYDEAKKLEHLLYGMVNLPKE--GKMSTRA  211 (212)
T ss_pred             EECCCHHHHHHHHHHHHHHcCCCCCCCeEEEEEEeEEcCCC--CCCCCCC
Confidence            89999999999999999999975 3333  33467765445  6999975

Arginyl tRNA synthetase (ArgRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. There are at least three subgroups of ArgRS. One type contains both characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The second subtype lacks the KMSKS motif; however, it has a lysine N-terminal to the HIGH motif, which serves as the functional counterpart to the second lysine of the KMSKS motif. A third group, which is found primarily in archaea and a few bacteria, lacks both the KMSKS motif and the HIGH loop lysine.

>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases

Probab=93.41  E-value=0.042  Score=49.13  Aligned_cols=54  Identities=24%  Similarity=0.330  Sum_probs=33.0

Q ss_pred             cccCCCCchHHH----HHHHHHHHHhCC---CCcc-ccccCcccCCCCCCCCcCCCCCCCceecCC
Q 027582           56 LIPCAIDQDPYF----RMTRDVAPRIGY---HKPA-LIESSFFPALQGETGKMSASDPNSAIYVTD  113 (221)
Q Consensus        56 ~vpvG~DQ~~h~----~laR~ia~~~n~---~~p~-~l~~~~lp~L~g~~~KMSkS~~~s~I~L~D  113 (221)
                      +-.+|.||.+++    ..-..++...++   +.|. ++.+.+|- ++|  +|||||.+| .|.+.|
T Consensus       227 i~v~G~D~i~~h~~~~~~~~~~l~~~g~~~~~~~~~~~~~g~v~-~~g--~KmSkS~Gn-~v~~~d  288 (314)
T cd00812         227 IYIGGKEHAPNHLLYSRFNHKALFDEGLVTDEPPKGLIVQGMVL-LEG--EKMSKSKGN-VVTPDE  288 (314)
T ss_pred             eeecchhHHHHHHHHHHHHHHHHcCcccccccCcHHheecceEe-cCc--cccCCcCCC-CCCHHH
Confidence            457899997644    344444444553   3343 33345554 566  799999986 777653

Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.

>TIGR00456 argS arginyl-tRNA synthetase

Probab=92.97  E-value=0.08  Score=51.21  Aligned_cols=63  Identities=16%  Similarity=0.233  Sum_probs=46.6

Q ss_pred             cccCCCCchHHHHHHHHHHHHhCCCCcc-cccc--CcccCCCCCCCCcCCCCCCCceecCCCHHHHHHHHhh
Q 027582           56 LIPCAIDQDPYFRMTRDVAPRIGYHKPA-LIES--SFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINK  124 (221)
Q Consensus        56 ~vpvG~DQ~~h~~laR~ia~~~n~~~p~-~l~~--~~lp~L~g~~~KMSkS~~~s~I~L~D~p~~I~~KI~k  124 (221)
                      +-.+|.||..|+.-...++..+|++.|. +.++  -++.   +  .|||||.+| .|.+.|=.++..++...
T Consensus       331 I~V~g~~q~~h~~~v~~~l~~lG~~~~~~l~h~~~~~V~---~--~kmSkr~Gn-~V~~~dll~~~~~ra~~  396 (566)
T TIGR00456       331 IYVWGSDHHLHIAQFFAILEKLGFYKKKELIHLNFGMVP---L--GSMKTRRGN-VISLDNLLDEASKRAGN  396 (566)
T ss_pred             EEEecCcHHHHHHHHHHHHHHcCCCCCCceEEEEEEEEE---C--CCCCccCCc-eeeHHHHHHHHHHHHHH
Confidence            4579999999999999999999987664 3333  2332   2  499999975 99998766665554444

This model recognizes arginyl-tRNA synthetase in every completed genome to date. An interesting feature of the alignment of all arginyl-tRNA synthetases is a fairly deep split between two families. One family includes archaeal, eukaryotic and organellar, spirochete, E. coli, and Synechocystis sp. The second, sharing a deletion of about 25 residues in the central region relative to the first, includes Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and Mycobacteria, and the Gram-negative bacterium Helicobacter pylori.

>TIGR00392 ileS isoleucyl-tRNA synthetase

Probab=92.59  E-value=0.083  Score=53.54  Aligned_cols=53  Identities=26%  Similarity=0.206  Sum_probs=33.6

Q ss_pred             cccCCCCchH---HHHHHHHHHHHhCCCCc-cccccCcccCCCCCCCCcCCCCCCCceecC
Q 027582           56 LIPCAIDQDP---YFRMTRDVAPRIGYHKP-ALIESSFFPALQGETGKMSASDPNSAIYVT  112 (221)
Q Consensus        56 ~vpvG~DQ~~---h~~laR~ia~~~n~~~p-~~l~~~~lp~L~g~~~KMSkS~~~s~I~L~  112 (221)
                      +...|.||..   |..+-.-++- ++.+.| .++.+.++...+|  +|||||.+| .|...
T Consensus       567 ~~i~G~Di~r~Wf~~~~~~~~~~-~~~~P~k~v~~hG~vl~~~G--~KMSKSkGN-vI~p~  623 (861)
T TIGR00392       567 FILEGSDQTRGWFYSSLAIGTAL-FGQAPYKNVITHGFTLDEKG--RKMSKSLGN-VVDPL  623 (861)
T ss_pred             EEEEecchhccHHHHHHHHHHHH-cCCCChHhhEecceEECCCC--CCcCCCCCC-CCCHH
Confidence            5789999975   4344433332 454443 3344677776666  799999986 66553

The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms.

>PRK14900 valS valyl-tRNA synthetase; Provisional

Probab=92.58  E-value=0.087  Score=54.62  Aligned_cols=65  Identities=18%  Similarity=0.249  Sum_probs=44.0

Q ss_pred             cccCCCCchHHHHHHHHHHHHhCC--CCc--cccccCcccCCCCCCCCcCCCCCCCceecCC-----CHHHHHHHHhh
Q 027582           56 LIPCAIDQDPYFRMTRDVAPRIGY--HKP--ALIESSFFPALQGETGKMSASDPNSAIYVTD-----SAKAIKNKINK  124 (221)
Q Consensus        56 ~vpvG~DQ~~h~~laR~ia~~~n~--~~p--~~l~~~~lp~L~g~~~KMSkS~~~s~I~L~D-----~p~~I~~KI~k  124 (221)
                      +...|.||. ++=++|-++..+.+  ..|  .++.+.+|..-+|  +|||||.+| .|+..|     .+|.++--+..
T Consensus       494 ~~~~G~Dii-~~W~a~~l~~~~~~~~~~Pfk~V~~hG~v~d~~G--~KMSKSkGN-vIdP~dvIe~yGaDalR~~L~~  567 (1052)
T PRK14900        494 VMETGHDII-FFWVARMMMMGLHFMGEVPFRTVYLHPMVRDEKG--QKMSKTKGN-VIDPLVITEQYGADALRFTLAA  567 (1052)
T ss_pred             hhcccccHH-hHHHHHHHHHHHHhcCCCccceeEecccEECCCC--CCccCCCCC-CCCHHHHHHHhCcHHHHHHHHh
Confidence            457899998 45777888765532  345  4556788877777  799999986 776654     35555554444

>PRK04156 gltX glutamyl-tRNA synthetase; Provisional

Probab=92.43  E-value=0.09  Score=50.93  Aligned_cols=68  Identities=13%  Similarity=0.048  Sum_probs=54.0

Q ss_pred             ccchhhhhccCCCCCCCCcccccCCCCcccccCCCCchHHHHHHHHHHHHhCCCCccccccCcccCCCCCCCCcCCCCC
Q 027582           27 KVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDP  105 (221)
Q Consensus        27 ~l~YP~lqaa~~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~~laR~ia~~~n~~~p~~l~~~~lp~L~g~~~KMSkS~~  105 (221)
                      -..||.++=|.++-    |. +.+.   |+|..|.|...+-..=.-+.+.||.+.|...|.++|. ++|  .|||||..
T Consensus       277 ~~i~PtY~fA~~VD----D~-l~GI---THViRg~d~~~~t~~Q~~l~~~Lg~~~P~~~H~~~L~-~~g--~kLSKR~~  344 (567)
T PRK04156        277 YRVWPTYNFAVAVD----DH-LLGV---THVLRGKDHIDNTEKQRYIYDYFGWEYPETIHYGRLK-IEG--FVLSTSKI  344 (567)
T ss_pred             eEEEEEeccCceee----ec-CCCC---CeEEcccccccChHHHHHHHHHcCCCCceEEEcceec-CCC--ceeecccc
Confidence            34588888775552    43 3444   7899999999998888899999999999999999886 566  69999973

>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional

Probab=92.27  E-value=0.09  Score=54.01  Aligned_cols=57  Identities=21%  Similarity=0.113  Sum_probs=35.3

Q ss_pred             ccCCCCcccccCCCCchH---HHHHHHHHHHHhCCCCc-cccccCcccCCCCCCCCcCCCCCCCceec
Q 027582           48 SGKDHLRCLIPCAIDQDP---YFRMTRDVAPRIGYHKP-ALIESSFFPALQGETGKMSASDPNSAIYV  111 (221)
Q Consensus        48 ~~~ad~~~~vpvG~DQ~~---h~~laR~ia~~~n~~~p-~~l~~~~lp~L~g~~~KMSkS~~~s~I~L  111 (221)
                      .+.+|   +...|.||..   |-.+..-++ -.|.+.+ .++.|.++...+|  +|||||.+| .|..
T Consensus       581 ~~PaD---~~~eG~Di~rgWF~s~ll~s~~-~~~~~P~k~V~~HG~vld~~G--~KMSKSlGN-vIdP  641 (961)
T PRK13804        581 KWPAD---LYLEGSDQHRGWFNSSLLESCG-TRGRAPYKAVLTHGFTLDEKG--EKMSKSLGN-TVSP  641 (961)
T ss_pred             CCCce---EEEEEcccccHHHHHHHHHHHH-hcCCCChhhEEEeccEECCCC--CCccCCCCC-cCCH
Confidence            45665   5689999974   333322222 1122222 5556788888788  799999987 6654

>PLN02286 arginine-tRNA ligase

Probab=92.17  E-value=0.42  Score=46.50  Aligned_cols=67  Identities=13%  Similarity=0.203  Sum_probs=49.2

Q ss_pred             ccccCCCCchHHHHHHHHHHHHhCCCCc------cccccCcccCCCCCCCCcCCCCCCCceecCCCHHHHHHHHhh
Q 027582           55 CLIPCAIDQDPYFRMTRDVAPRIGYHKP------ALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINK  124 (221)
Q Consensus        55 ~~vpvG~DQ~~h~~laR~ia~~~n~~~p------~~l~~~~lp~L~g~~~KMSkS~~~s~I~L~D~p~~I~~KI~k  124 (221)
                      .+-.+|.||..|+.-...+++.+|+..+      .++...+|-+++|  +||||-.++ .|.|.|=-++..++.+.
T Consensus       330 ~IyVvg~~q~~hf~~v~~~l~~lG~~~~~~~~~l~h~~~g~V~~~~g--~kmStR~G~-~v~L~dlldea~~~a~~  402 (576)
T PLN02286        330 IIYVTDVGQQQHFDMVFKAAKRAGWLPEDTYPRLEHVGFGLVLGEDG--KRFRTRSGE-VVRLVDLLDEAKSRSKA  402 (576)
T ss_pred             EEEEEeCcHHHHHHHHHHHHHHcCCCccccCCceEEEeeccEECCCC--CcccCCCCC-eeEHHHHHHHHHHHHHH
Confidence            3557899999999999999999997522      2344567866776  699988775 89887766655444444

>TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete

Probab=92.15  E-value=0.075  Score=50.98  Aligned_cols=55  Identities=25%  Similarity=0.396  Sum_probs=33.4

Q ss_pred             ccccCCCCchHHH---HHHHHHHH-HhCCCCccccccCcccCCCCCCCCcCCCCCCCceec
Q 027582           55 CLIPCAIDQDPYF---RMTRDVAP-RIGYHKPALIESSFFPALQGETGKMSASDPNSAIYV  111 (221)
Q Consensus        55 ~~vpvG~DQ~~h~---~laR~ia~-~~n~~~p~~l~~~~lp~L~g~~~KMSkS~~~s~I~L  111 (221)
                      ++-|.|.|+...-   ....++|+ -||...|..+..-++ .|+|.++|||||.+| .|.+
T Consensus       227 ~~Ep~GkDH~~~ggsy~~~~~ia~~~l~~~~P~~~~ye~v-~L~~~g~KMSKS~Gn-~itl  285 (515)
T TIGR00467       227 TFEPAGKDHAAAGGSYDTGVNIAKEIFQYSPPVTVQYEWI-SLKGKGGKMSSSKGD-VISV  285 (515)
T ss_pred             ccccCCCCccCccCCchhHHHHHHHHhCCCCCcCcEEEEE-EEcCCCccccCCCCC-CccH
Confidence            3579999975422   44566665 676656654332222 155555799999886 5554

This model represents the lysyl-tRNA synthetases that are class I amino-acyl tRNA synthetases. It includes archaeal and spirochete examples of the enzyme. All other known examples are class IIc amino-acyl tRNA synthetases and seem to form a separate orthologous set.

>PRK05729 valS valyl-tRNA synthetase; Reviewed

Probab=91.99  E-value=0.1  Score=53.07  Aligned_cols=54  Identities=22%  Similarity=0.254  Sum_probs=37.7

Q ss_pred             cccCCCCchHHHHHHHHHHHHhCC--CCc--cccccCcccCCCCCCCCcCCCCCCCceecCC
Q 027582           56 LIPCAIDQDPYFRMTRDVAPRIGY--HKP--ALIESSFFPALQGETGKMSASDPNSAIYVTD  113 (221)
Q Consensus        56 ~vpvG~DQ~~h~~laR~ia~~~n~--~~p--~~l~~~~lp~L~g~~~KMSkS~~~s~I~L~D  113 (221)
                      +...|.||..+ =++|-++.....  ..|  .++.+.++-..+|  +|||||.+| .|...|
T Consensus       476 ~~~~G~Dii~~-W~a~~~~~~~~~~~~~Pfk~v~~hG~v~d~~G--~KMSKSlGN-vIdP~d  533 (874)
T PRK05729        476 VLVTGFDIIFF-WVARMIMMGLHFTGQVPFKDVYIHGLVRDEQG--RKMSKSKGN-VIDPLD  533 (874)
T ss_pred             cccccccccch-HHHHHHHHHHHhcCCCchhheEEeeeEECCCC--CCcccCCCC-CCCHHH
Confidence            46889999874 566666655432  345  4556788888888  799999986 676543

>PRK11893 methionyl-tRNA synthetase; Reviewed

Probab=91.85  E-value=0.073  Score=50.35  Aligned_cols=63  Identities=24%  Similarity=0.224  Sum_probs=38.5

Q ss_pred             cccCCCCchHHH---HHHHHHHHHhCCCCc-cccccCcccCCCCCCCCcCCCCCCCceecCC-----CHHHHHHHHhh
Q 027582           56 LIPCAIDQDPYF---RMTRDVAPRIGYHKP-ALIESSFFPALQGETGKMSASDPNSAIYVTD-----SAKAIKNKINK  124 (221)
Q Consensus        56 ~vpvG~DQ~~h~---~laR~ia~~~n~~~p-~~l~~~~lp~L~g~~~KMSkS~~~s~I~L~D-----~p~~I~~KI~k  124 (221)
                      +...|.||..++   ..+.-.|  .+.+.| .++.+.++- ++|  +|||||.+| .|.+.|     +++.++=-+.+
T Consensus       257 ~~~~G~D~~~~h~~~~~a~~~a--~~~~~p~~~~~~g~v~-~~G--~KMSKS~GN-~i~~~dll~~~g~DalR~~ll~  328 (511)
T PRK11893        257 VHLIGKDILRFHAVYWPAFLMA--AGLPLPKRVFAHGFLT-LDG--EKMSKSLGN-VIDPFDLVDEYGVDAVRYFLLR  328 (511)
T ss_pred             ceEecccccccchhHHHHHHHh--CCCCCCCEEEeeccEE-ECC--eeecccCCc-EEcHHHHHHHcCcHHHHHHHHh
Confidence            367899998852   2233333  255556 344566665 566  799999986 887744     34555444433

>PTZ00419 valyl-tRNA synthetase-like protein; Provisional

Probab=91.55  E-value=0.13  Score=52.95  Aligned_cols=55  Identities=25%  Similarity=0.210  Sum_probs=38.8

Q ss_pred             cCCCCcccccCCCCchHHHHHHHHHHHHhCC--CCc--cccccCcccCCCCCCCCcCCCCCCCcee
Q 027582           49 GKDHLRCLIPCAIDQDPYFRMTRDVAPRIGY--HKP--ALIESSFFPALQGETGKMSASDPNSAIY  110 (221)
Q Consensus        49 ~~ad~~~~vpvG~DQ~~h~~laR~ia~~~n~--~~p--~~l~~~~lp~L~g~~~KMSkS~~~s~I~  110 (221)
                      |.+|   +...|.||.. +=++|-++....+  ..|  .++.|.++-+-+|  +|||||.+| .|.
T Consensus       537 ~P~d---~~~~G~Dii~-~W~arm~~~~~~~~~~~Pfk~v~~HG~v~d~~G--~KMSKSlGN-vId  595 (995)
T PTZ00419        537 FPTS---LLETGSDILF-FWVARMVMMSLHLTDKLPFKTVFLHAMVRDSQG--EKMSKSKGN-VID  595 (995)
T ss_pred             CCCc---EEEechhHHh-HHHHHHHHHHHHhcCCCChHHHhccceEECCCC--CCcccCCCC-cCC
Confidence            4564   5688999876 5666666665533  456  4566888888787  799999987 553

>PRK13208 valS valyl-tRNA synthetase; Reviewed

Probab=91.52  E-value=0.13  Score=51.73  Aligned_cols=52  Identities=23%  Similarity=0.194  Sum_probs=32.2

Q ss_pred             cccCCCCchHHHHHHHHHHHH---hCCCCc--cccccCcccCCCCCCCCcCCCCCCCceecC
Q 027582           56 LIPCAIDQDPYFRMTRDVAPR---IGYHKP--ALIESSFFPALQGETGKMSASDPNSAIYVT  112 (221)
Q Consensus        56 ~vpvG~DQ~~h~~laR~ia~~---~n~~~p--~~l~~~~lp~L~g~~~KMSkS~~~s~I~L~  112 (221)
                      +...|.||... -+.+-++..   ++. .|  .++.+.++...+|  +|||||.+| .|...
T Consensus       489 ~~~~G~Di~~~-w~~~~l~~~~~~~~~-~Pf~~v~~hg~v~~~~G--~KMSKS~GN-~i~p~  545 (800)
T PRK13208        489 LRPQGHDIIRT-WLFYTILRAYLLTGK-LPWKNIMISGMVLDPDG--KKMSKSKGN-VVTPE  545 (800)
T ss_pred             EEEeecchhhh-HHHHHHHHHHHhcCC-CCcceEEEeeEEECCCC--CCCCCCCCC-CCCHH
Confidence            45789999862 223333222   232 34  3445777777777  799999986 66653

>PRK00260 cysS cysteinyl-tRNA synthetase; Validated

Probab=91.43  E-value=0.095  Score=49.50  Aligned_cols=52  Identities=23%  Similarity=0.275  Sum_probs=31.0

Q ss_pred             cccCCCCch-HHHHHHHHHHH---HhCCCCccc-cccCcccCCCCCCCCcCCCCCCCceecCC
Q 027582           56 LIPCAIDQD-PYFRMTRDVAP---RIGYHKPAL-IESSFFPALQGETGKMSASDPNSAIYVTD  113 (221)
Q Consensus        56 ~vpvG~DQ~-~h~~laR~ia~---~~n~~~p~~-l~~~~lp~L~g~~~KMSkS~~~s~I~L~D  113 (221)
                      +-++|.|.. +|+  .++||.   -+|.|-+.+ +|+.+| .++|  +|||||.+| .|.+.|
T Consensus       223 ih~gG~DlifpHh--~neiaqs~a~~g~p~~~~w~H~g~v-~~~G--~KMSKS~GN-~i~~~d  279 (463)
T PRK00260        223 IHGGGADLIFPHH--ENEIAQSEAATGKPFANYWMHNGFV-TVNG--EKMSKSLGN-FFTIRD  279 (463)
T ss_pred             eecCccccCCCch--HhHHHHHHHhcCCCcceEEEEccEE-ccCC--CcccCcCCC-CCCHHH
Confidence            458999953 454  455665   245222223 344444 4777  699999986 666543

>PLN02381 valyl-tRNA synthetase

Probab=91.37  E-value=0.12  Score=53.76  Aligned_cols=55  Identities=22%  Similarity=0.205  Sum_probs=39.6

Q ss_pred             cCCCCcccccCCCCchHHHHHHHHHHHHhCC--CCc--cccccCcccCCCCCCCCcCCCCCCCcee
Q 027582           49 GKDHLRCLIPCAIDQDPYFRMTRDVAPRIGY--HKP--ALIESSFFPALQGETGKMSASDPNSAIY  110 (221)
Q Consensus        49 ~~ad~~~~vpvG~DQ~~h~~laR~ia~~~n~--~~p--~~l~~~~lp~L~g~~~KMSkS~~~s~I~  110 (221)
                      |.+|   +..-|.||. ++=++|-+...+..  ..|  .++.+.+|-+-+|  +|||||.+| .|.
T Consensus       607 ~P~d---~~~~G~Dii-~~W~~rmi~~~~~~~~~~PFk~v~~hG~V~D~~G--~KMSKS~GN-vId  665 (1066)
T PLN02381        607 YPTS---VLETGHDIL-FFWVARMVMMGMQLGGDVPFRKVYLHPMIRDAHG--RKMSKSLGN-VID  665 (1066)
T ss_pred             CCCe---eeeecchhh-hhHHHHHHHHHHHhCCCCchHHheecceEECCCC--CCCCCCCCC-CCC
Confidence            5565   467899998 56677777665433  455  4566888888888  799999987 554

>PLN02843 isoleucyl-tRNA synthetase

Probab=91.34  E-value=0.14  Score=52.73  Aligned_cols=56  Identities=25%  Similarity=0.135  Sum_probs=35.5

Q ss_pred             ccCCCCcccccCCCCchH---HHHHHHHHHHHhCCCCc-cccccCcccCCCCCCCCcCCCCCCCcee
Q 027582           48 SGKDHLRCLIPCAIDQDP---YFRMTRDVAPRIGYHKP-ALIESSFFPALQGETGKMSASDPNSAIY  110 (221)
Q Consensus        48 ~~~ad~~~~vpvG~DQ~~---h~~laR~ia~~~n~~~p-~~l~~~~lp~L~g~~~KMSkS~~~s~I~  110 (221)
                      .+.+|   +...|.||..   |-++..-++ -.|.+.+ .++.|.++..-+|  +|||||.+| .|.
T Consensus       562 ~~PaD---l~~eG~Di~rgWf~s~l~~~~~-~~g~~Pfk~v~~HG~vld~~G--~KMSKSlGN-vI~  621 (974)
T PLN02843        562 SYPAD---LYLEGSDQHRGWFQSSLLTSVA-TKGKAPYKSVLTHGFVLDEKG--FKMSKSLGN-VVD  621 (974)
T ss_pred             CCCce---eeeeeccccchHHHHHHHHHHH-hcCCCccceEEEeccEECCCC--CCcCCCCCC-cCC
Confidence            45565   5689999987   334443332 2444222 4455777777777  799999986 554

>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6

Probab=91.28  E-value=0.086  Score=51.34  Aligned_cols=57  Identities=25%  Similarity=0.122  Sum_probs=32.1

Q ss_pred             cCCCCcccccCCCCchHH-HHHHHHHHHHhCCCCc--cccccCcccCCCCCCCCcCCCCCCCceec
Q 027582           49 GKDHLRCLIPCAIDQDPY-FRMTRDVAPRIGYHKP--ALIESSFFPALQGETGKMSASDPNSAIYV  111 (221)
Q Consensus        49 ~~ad~~~~vpvG~DQ~~h-~~laR~ia~~~n~~~p--~~l~~~~lp~L~g~~~KMSkS~~~s~I~L  111 (221)
                      |.+|   +...|.||... +....-+...+.-..|  .++.+.++...+|  +|||||.+| .|..
T Consensus       513 ~P~D---~~~~G~D~~~~W~~~~l~~~~~l~~~~pfk~v~~hG~vld~~G--~KMSKS~GN-vi~p  572 (601)
T PF00133_consen  513 YPVD---LYIEGKDQIRGWFQSSLFLSVALFGKEPFKKVITHGFVLDEDG--RKMSKSKGN-VIDP  572 (601)
T ss_dssp             SSBS---EEEEEGGGTTTHHHHHHHHHHHHSSSTSBSEEEEE--EEETTS--SB-BTTTTB---BH
T ss_pred             CCcc---cccCCccchhhHHHHhHhhccccccCCchheeeecccccccce--eecccCCCc-ccCH
Confidence            4554   56789999753 3333333333333333  5566788888888  799999987 6643

1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1OBC_A 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 1QU3_A 1QU2_A ....

>PRK00133 metG methionyl-tRNA synthetase; Reviewed

Probab=90.88  E-value=1.2  Score=44.15  Aligned_cols=52  Identities=21%  Similarity=0.275  Sum_probs=33.8

Q ss_pred             cccCCCCchHHHHH---HHHHHHHhCCCCcccc-ccCcccCCCCCCCCcCCCCCCCceecCC
Q 027582           56 LIPCAIDQDPYFRM---TRDVAPRIGYHKPALI-ESSFFPALQGETGKMSASDPNSAIYVTD  113 (221)
Q Consensus        56 ~vpvG~DQ~~h~~l---aR~ia~~~n~~~p~~l-~~~~lp~L~g~~~KMSkS~~~s~I~L~D  113 (221)
                      +..+|.|-..++.+   |.-+|  .|++.|..+ .+.++.. +|  +|||||.+| .|+..|
T Consensus       287 v~~iGkDi~~fH~i~wpa~l~a--~g~~lP~~v~~hg~v~~-~G--~KMSKS~GN-vV~p~d  342 (673)
T PRK00133        287 YHFIGKDIIYFHTLFWPAMLEG--AGYRLPTNVFAHGFLTV-EG--AKMSKSRGT-FIWART  342 (673)
T ss_pred             EEEEeecchhHHHHHHHHHHHh--CCCCCCCEEeeeccEEe-cC--CcccccCCc-ccCHHH
Confidence            45689999886533   44444  466666443 3566655 66  799999986 676543

>TIGR00435 cysS cysteinyl-tRNA synthetase

Probab=90.71  E-value=0.13  Score=48.69  Aligned_cols=61  Identities=16%  Similarity=0.164  Sum_probs=36.5

Q ss_pred             cccccCCCCcccccCCCCc-hHHHHHHHHHHHH-hCCCCccc-cccCcccCCCCCCCCcCCCCCCCceecC
Q 027582           45 HLFSGKDHLRCLIPCAIDQ-DPYFRMTRDVAPR-IGYHKPAL-IESSFFPALQGETGKMSASDPNSAIYVT  112 (221)
Q Consensus        45 Dil~~~ad~~~~vpvG~DQ-~~h~~laR~ia~~-~n~~~p~~-l~~~~lp~L~g~~~KMSkS~~~s~I~L~  112 (221)
                      .+|...-|   +-.+|.|. -+|++--+-.+.- +|.+-+.. +++.+| .++|  +|||||.+| .|.+.
T Consensus       214 ~~lg~~~D---ih~gG~Dl~fpHhene~aqs~a~~g~~~~~~~~h~g~v-~~~g--~KMSKS~GN-~i~~~  277 (465)
T TIGR00435       214 KYLGDQID---IHGGGVDLIFPHHENEIAQSEAAFGKQLAKYWMHNGFL-MIDN--EKMSKSLGN-FFTVR  277 (465)
T ss_pred             HhcCCCce---eeccccccccchHHHHHHHHHHhcCCCCCcEEEEeeEE-EecC--ccccccCCC-cCCHH
Confidence            45544444   45899998 4676655555443 45333333 344443 4777  699999986 66553

This model finds the cysteinyl-tRNA synthetase from most but not from all species. The enzyme from one archaeal species, Archaeoglobus fulgidus, is found but the equivalent enzymes from some other Archaea, including Methanococcus jannaschii, are not found, although biochemical evidence suggests that tRNA(Cys) in these species are charged directly with Cys rather than through a misacylation and correction pathway as for tRNA(Gln).

>PLN02943 aminoacyl-tRNA ligase

Probab=90.48  E-value=0.16  Score=52.25  Aligned_cols=69  Identities=22%  Similarity=0.226  Sum_probs=44.8

Q ss_pred             cCCCCcccccCCCCchHHHHHHHHHHHHhCC--CCc--cccccCcccCCCCCCCCcCCCCCCCceecCC-----CHHHHH
Q 027582           49 GKDHLRCLIPCAIDQDPYFRMTRDVAPRIGY--HKP--ALIESSFFPALQGETGKMSASDPNSAIYVTD-----SAKAIK  119 (221)
Q Consensus        49 ~~ad~~~~vpvG~DQ~~h~~laR~ia~~~n~--~~p--~~l~~~~lp~L~g~~~KMSkS~~~s~I~L~D-----~p~~I~  119 (221)
                      |.+|   +...|.||. .+=++|-++.....  ..|  .++.|.++...+|  +|||||.+| .|...|     .++.++
T Consensus       535 yP~d---l~~~G~Dii-~fW~a~m~~~~~~~~~~~Pf~~v~~hg~v~~~~G--~KMSKS~GN-~i~p~~~i~~ygaDalR  607 (958)
T PLN02943        535 YPTT---VLETGHDIL-FFWVARMVMMGIEFTGTVPFSYVYLHGLIRDSQG--RKMSKTLGN-VIDPLDTIKEFGTDALR  607 (958)
T ss_pred             CCCe---EEEEeehHH-HHHHHHHHHhhhhhcCCCChheEEEeccEECCCC--CcccCcCCC-CCCHHHHHHhcCChHHH
Confidence            4454   457799998 46777766643332  335  3455778877888  799999986 776543     355565


Q ss_pred             HHHhh
Q 027582          120 NKINK  124 (221)
Q Consensus       120 ~KI~k  124 (221)
                      --+..
T Consensus       608 ~~l~~  612 (958)
T PLN02943        608 FTLAL  612 (958)
T ss_pred             HHHHh
Confidence            54444

>TIGR03838 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthetase

Probab=90.20  E-value=0.44  Score=42.11  Aligned_cols=68  Identities=12%  Similarity=0.094  Sum_probs=52.5

Q ss_pred             ccccCCCCchHHHHHHHHHHHHhCCCCccccccCcccCCCCCCCCcCCCCCCCceecCCCHHHHHHHHhh
Q 027582           55 CLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINK  124 (221)
Q Consensus        55 ~~vpvG~DQ~~h~~laR~ia~~~n~~~p~~l~~~~lp~L~g~~~KMSkS~~~s~I~L~D~p~~I~~KI~k  124 (221)
                      |+|.-|.|....--.=.-|.+.||.+.|...|.|+|.+.+|  +|+||++....|.=.+.++.+..-+..
T Consensus       187 ThViRG~D~l~~t~~q~~l~~aLg~~~P~y~H~pll~~~~g--~kLSKR~~~~~i~~~~~~~~~~~~l~~  254 (272)
T TIGR03838       187 THVVRGADLLDSTPRQIYLQRLLGLPPPRYLHLPLVVNADG--EKLSKQNGAPALDLSHPLPALLAALRF  254 (272)
T ss_pred             CEEEeCHhhhhccHHHHHHHHHhCCCCCeEEechhhhCCCC--CeeeccCCccchhcCCcHHHHHHHHHH
Confidence            68999999988877778888999999999999999999998  699999865444333444444444443

This protein resembles a shortened glutamyl-tRNA ligase, but its purpose is to modify tRNA(Asp) at a queuosine position in the anticodon rather than to charge a tRNA with its cognate amino acid.

>PRK12300 leuS leucyl-tRNA synthetase; Reviewed

Probab=90.08  E-value=0.18  Score=51.41  Aligned_cols=53  Identities=21%  Similarity=0.145  Sum_probs=31.5

Q ss_pred             cccCCCCchH-HHHHHHHHHHH-hCC-CCc-cccccCcccCCCCCCCCcCCCCCCCceecC
Q 027582           56 LIPCAIDQDP-YFRMTRDVAPR-IGY-HKP-ALIESSFFPALQGETGKMSASDPNSAIYVT  112 (221)
Q Consensus        56 ~vpvG~DQ~~-h~~laR~ia~~-~n~-~~p-~~l~~~~lp~L~g~~~KMSkS~~~s~I~L~  112 (221)
                      +...|.||.. |+-...-...- |+. +-| .++.+.++.. +|  +|||||.+| .|...
T Consensus       533 ~~~~GkDii~~Hl~~~~~~~~a~~~~~~~Pk~v~~hG~vl~-~G--~KMSKS~GN-vVdp~  589 (897)
T PRK12300        533 WRHSGKDLIPNHLTFFIFNHVAIFPEEKWPRGIVVNGFVLL-EG--KKMSKSKGN-VIPLR  589 (897)
T ss_pred             EEEeeeccCccHHHHHHHHHHHhcCCCccCcEEEEcceEEE-CC--ccccCcCCC-CCCHH
Confidence            4688999966 54444322211 221 334 4445666665 66  799999987 66543

>PLN02959 aminoacyl-tRNA ligase

Probab=90.02  E-value=0.24  Score=51.53  Aligned_cols=57  Identities=19%  Similarity=0.070  Sum_probs=32.9

Q ss_pred             cCCCCcccccCCCCchHHHHHHHHHHHH---hCC-CCcc-ccccCcccCCCCCCCCcCCCCCCCceecCC
Q 027582           49 GKDHLRCLIPCAIDQDPYFRMTRDVAPR---IGY-HKPA-LIESSFFPALQGETGKMSASDPNSAIYVTD  113 (221)
Q Consensus        49 ~~ad~~~~vpvG~DQ~~h~~laR~ia~~---~n~-~~p~-~l~~~~lp~L~g~~~KMSkS~~~s~I~L~D  113 (221)
                      |.+|   +...|.||.... ++.-+...   ++. |-|. ++.+.+|. ++|  +|||||.+| .|.+.|
T Consensus       670 yP~D---l~~sG~Dii~~w-l~~~l~~~~al~~~~P~p~~v~v~G~V~-~~G--~KMSKSkGN-vI~p~d  731 (1084)
T PLN02959        670 YPFD---LRVSGKDLIQNH-LTFAIYNHTAIWAEEHWPRGFRCNGHLM-LNS--EKMSKSTGN-FLTLRQ  731 (1084)
T ss_pred             CCCe---EEEecccHHHHH-HHHHHHHHHHhcCCCCCCceEEEccEEe-cCC--cCccccCCC-cCCHHH
Confidence            4554   457899996653 23333332   221 2222 33455555 666  799999986 666543

>TIGR00422 valS valyl-tRNA synthetase

Probab=89.89  E-value=0.21  Score=50.75  Aligned_cols=69  Identities=22%  Similarity=0.182  Sum_probs=42.8

Q ss_pred             cCCCCcccccCCCCchHHHHHHHHHHHHhC--CCCc--cccccCcccCCCCCCCCcCCCCCCCceecCC-----CHHHHH
Q 027582           49 GKDHLRCLIPCAIDQDPYFRMTRDVAPRIG--YHKP--ALIESSFFPALQGETGKMSASDPNSAIYVTD-----SAKAIK  119 (221)
Q Consensus        49 ~~ad~~~~vpvG~DQ~~h~~laR~ia~~~n--~~~p--~~l~~~~lp~L~g~~~KMSkS~~~s~I~L~D-----~p~~I~  119 (221)
                      +.+|   +...|.||... -++|-++-...  -..|  .++.+.++...+|  +|||||.+| .|.+.|     ..+.++
T Consensus       477 ~P~d---~~~~G~Dii~f-w~~~~~~~~~~~~~~~Pfk~v~~hG~v~d~~G--~KMSKS~GN-~i~p~~~i~~ygaDalR  549 (861)
T TIGR00422       477 YPTD---LLVTGYDIIFF-WVARMIFRSLALTGQVPFKEVYIHGLVRDEQG--RKMSKSLGN-VIDPLDVIEKYGADALR  549 (861)
T ss_pred             CCcc---eeecchhhhhH-HHHHHHHHHHHhcCCCchheEEEeeEEECCCC--CCCCcCCCC-CCCHHHHHHHhChHHHH
Confidence            4454   56899999765 34455554322  1345  4556788888787  799999986 676543     244444


Q ss_pred             HHHhh
Q 027582          120 NKINK  124 (221)
Q Consensus       120 ~KI~k  124 (221)
                      --+..
T Consensus       550 ~~l~~  554 (861)
T TIGR00422       550 FTLAS  554 (861)
T ss_pred             HHHHh
Confidence            44443

The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase.

>PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed

Probab=89.79  E-value=0.29  Score=43.86  Aligned_cols=50  Identities=12%  Similarity=0.083  Sum_probs=44.5

Q ss_pred             ccccCCCCchHHHHHHHHHHHHhCCCCccccccCcccCCCCCCCCcCCCCCC
Q 027582           55 CLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPN  106 (221)
Q Consensus        55 ~~vpvG~DQ~~h~~laR~ia~~~n~~~p~~l~~~~lp~L~g~~~KMSkS~~~  106 (221)
                      |+|.=|.|....-..=.-+.+.||.+.|...|.|+|.+.+|  +|+||++..
T Consensus       194 ThVvRG~D~l~~t~~Q~~l~~aLg~~~P~y~H~pll~~~~g--~kLSKr~~~  243 (299)
T PRK05710        194 THVVRGADLLDSTPRQIYLQQLLGLPTPRYLHLPLVLNADG--QKLSKQNGA  243 (299)
T ss_pred             CEEEeChhhhhcCHHHHHHHHHcCCCCCeEEEeecccCCCC--CcccccCCc
Confidence            68999999988877778899999999999999999999998  699999753

>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed

Probab=89.78  E-value=0.22  Score=51.28  Aligned_cols=56  Identities=20%  Similarity=0.004  Sum_probs=33.4

Q ss_pred             cCCCCcccccCCCCchHHHHHHHHHHH---HhCCCCc-cccccCcccCCCCCCCCcCCCCCCCceec
Q 027582           49 GKDHLRCLIPCAIDQDPYFRMTRDVAP---RIGYHKP-ALIESSFFPALQGETGKMSASDPNSAIYV  111 (221)
Q Consensus        49 ~~ad~~~~vpvG~DQ~~h~~laR~ia~---~~n~~~p-~~l~~~~lp~L~g~~~KMSkS~~~s~I~L  111 (221)
                      +.+|   +...|.||... =+.+-++.   -+|.+.+ .++.+.++...+|  +|||||.+| .|..
T Consensus       544 ~Pad---~~~~G~Di~r~-Wf~~l~~~~~~~~~~~pfk~v~~hG~Vld~~G--~KMSKSlGN-vIdP  603 (975)
T PRK06039        544 FPAD---FIVEGIDQTRG-WFYTLLALSTALFDRPPYKNVLVHGHVLDEDG--QKMSKSLGN-YVDP  603 (975)
T ss_pred             CCce---EEEechhhHhh-HHHHHHHHHHHhcCCCcccEEEEeeeEECCCC--CCcCCCCCC-cCCH
Confidence            4454   56789999753 12222222   2343222 3445677776677  799999986 6654

>PRK12418 cysteinyl-tRNA synthetase; Provisional

Probab=89.72  E-value=0.26  Score=45.62  Aligned_cols=62  Identities=19%  Similarity=0.142  Sum_probs=35.2

Q ss_pred             cccccCCCCcccccCCCCch-HHHHHHHHHHHH-hCC-CCccccccCcccCCCCCCCCcCCCCCCCceecC
Q 027582           45 HLFSGKDHLRCLIPCAIDQD-PYFRMTRDVAPR-IGY-HKPALIESSFFPALQGETGKMSASDPNSAIYVT  112 (221)
Q Consensus        45 Dil~~~ad~~~~vpvG~DQ~-~h~~laR~ia~~-~n~-~~p~~l~~~~lp~L~g~~~KMSkS~~~s~I~L~  112 (221)
                      .+|.-.-||   --+|.|-. +|+|--+-.... +|. +-+.+..+.-+...+|  +|||||.+| .|.+.
T Consensus       209 ~~lg~~~DI---H~GG~DL~FPHHeneiaq~~a~~g~~~~~~~w~H~g~l~~~G--~KMSKSlGN-~i~~~  273 (384)
T PRK12418        209 NRLGSGFDI---QGGGSDLIFPHHEFSAAHAEAATGERRFARHYVHAGMIGLDG--EKMSKSRGN-LVFVS  273 (384)
T ss_pred             HHcCCCccc---ccCccccccchhHhHHHHHHHhcCCCCcceEEEECCEECCCC--CcccCcCCC-cCCHH
Confidence            454443443   35777754 566554444433 343 2233444444556677  799999986 77664

>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family

Probab=89.71  E-value=0.19  Score=51.54  Aligned_cols=64  Identities=17%  Similarity=0.142  Sum_probs=37.3

Q ss_pred             cccCCCCchH-HHHHHHHHHHHhCCC---Cc-cccccCcccCCCCCCCCcCCCCCCCceecCC-----CHHHHHHHHhh
Q 027582           56 LIPCAIDQDP-YFRMTRDVAPRIGYH---KP-ALIESSFFPALQGETGKMSASDPNSAIYVTD-----SAKAIKNKINK  124 (221)
Q Consensus        56 ~vpvG~DQ~~-h~~laR~ia~~~n~~---~p-~~l~~~~lp~L~g~~~KMSkS~~~s~I~L~D-----~p~~I~~KI~k  124 (221)
                      +...|.||.+ |+....-.. ...++   -| .++++.++.. +|  +|||||.+| .|.+.|     +++.++=-+..
T Consensus       576 ~~~~GkDii~~H~~~~i~~~-~a~~~~~~~Pk~i~~~G~vl~-~G--~KMSKSlGN-vI~p~d~i~~yGaDalRl~Ll~  649 (938)
T TIGR00395       576 WRISGKDLIPNHLTFYIFHH-VAIFPEKFWPRGIVVNGYVML-EG--KKMSKSKGN-VLTLEQAVEKFGADVARLYIAD  649 (938)
T ss_pred             EEEEeeccccchHHHHHHHH-HHcCCccccCcEEEEeceEEe-CC--ccccCcCCC-CCCHHHHHHHcChHHHHHHHHh
Confidence            4688999976 555442221 12222   23 4445666654 66  799999986 776543     35555555554

The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS.

>PRK12267 methionyl-tRNA synthetase; Reviewed

Probab=89.71  E-value=1.3  Score=43.46  Aligned_cols=63  Identities=16%  Similarity=0.219  Sum_probs=36.4

Q ss_pred             cccCCCCchHHHH-H--HHHHHHHhCCCCccccc-cCcccCCCCCCCCcCCCCCCCceecCC-----CHHHHHHHHhh
Q 027582           56 LIPCAIDQDPYFR-M--TRDVAPRIGYHKPALIE-SSFFPALQGETGKMSASDPNSAIYVTD-----SAKAIKNKINK  124 (221)
Q Consensus        56 ~vpvG~DQ~~h~~-l--aR~ia~~~n~~~p~~l~-~~~lp~L~g~~~KMSkS~~~s~I~L~D-----~p~~I~~KI~k  124 (221)
                      +...|.||..++- +  +.-+  -.|++.|..+. +.++. +.|  +|||||.+| .|+..|     +++.++=-+.+
T Consensus       257 ~~~~GkDii~fH~i~wpa~l~--~~~~~~p~~v~~hg~l~-~eg--~KMSKS~GN-~i~p~d~l~~ygaD~lR~~L~~  328 (648)
T PRK12267        257 VHLVGKDILRFHAIYWPIMLM--ALGLPLPKKVFAHGWWL-MKD--GKMSKSKGN-VVDPEELVDRYGLDALRYYLLR  328 (648)
T ss_pred             eEEEeeeecchhHHHHHHHHH--hCCCCCCcEEEecceEE-ECC--ceecccCCc-ccCHHHHHHHcCCcHHHHHHHh
Confidence            4578999987433 2  2222  24566665443 44443 345  799999986 776644     34555544443

>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases

Probab=88.98  E-value=0.2  Score=44.79  Aligned_cols=53  Identities=19%  Similarity=0.197  Sum_probs=31.6

Q ss_pred             cccCCCCchHHHHHHH-HHHHHhCCCCccccc-cCcccCCCCCCCCcCCCCCCCceecC
Q 027582           56 LIPCAIDQDPYFRMTR-DVAPRIGYHKPALIE-SSFFPALQGETGKMSASDPNSAIYVT  112 (221)
Q Consensus        56 ~vpvG~DQ~~h~~laR-~ia~~~n~~~p~~l~-~~~lp~L~g~~~KMSkS~~~s~I~L~  112 (221)
                      +..+|.|+..++.+.- -+..-.+.+.|..+. +.++ .++|  +|||||.+| .|.+.
T Consensus       238 v~~~G~D~~~fh~~~~pa~l~~~~~~~~~~~~~~~~~-~~~g--~kmSkS~gn-~i~~~  292 (319)
T cd00814         238 VHFIGKDIIRFHAIYWPAMLLGAGLPLPTRIVAHGYL-TVEG--KKMSKSRGN-VVDPD  292 (319)
T ss_pred             EEEEeechhhhhHHHHHHHHHhCCCCCCcEeeeeeeE-EECC--eeecccCCc-ccCHH
Confidence            5689999988642211 122234555454443 4443 4456  699999986 77764

Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.

>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase

Probab=88.80  E-value=0.22  Score=42.31  Aligned_cols=63  Identities=19%  Similarity=0.072  Sum_probs=36.9

Q ss_pred             cccccCCCCcccccCCCCch-HHHHHHHHHHHH-hCCCCccccccCcccCCCCCCCCcCCCCCCCceecCC
Q 027582           45 HLFSGKDHLRCLIPCAIDQD-PYFRMTRDVAPR-IGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTD  113 (221)
Q Consensus        45 Dil~~~ad~~~~vpvG~DQ~-~h~~laR~ia~~-~n~~~p~~l~~~~lp~L~g~~~KMSkS~~~s~I~L~D  113 (221)
                      ..|...-|   +--+|.|.. +|++--.-.... +|.+.+....+.-+-.++|  +|||||.+| .|.+.|
T Consensus       123 ~~lg~~~d---ih~~G~Dl~fpH~~~~~a~~~a~~g~~~~~~~~h~~~v~~~g--~KMSKs~Gn-~v~~~d  187 (213)
T cd00672         123 KYLGETFD---IHGGGVDLIFPHHENEIAQSEAATGKPFARYWLHTGHLTIDG--EKMSKSLGN-FITVRD  187 (213)
T ss_pred             HHcCCCcc---EEeecCCCCcChHHHHHHHHHHHhCCCCCcEEEEEEEEeccC--cchhhcCCC-ccCHHH
Confidence            44443344   346788865 566655544443 4543343444434456777  699999986 676654

Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.

>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family

Probab=88.52  E-value=0.23  Score=50.34  Aligned_cols=60  Identities=22%  Similarity=0.135  Sum_probs=36.9

Q ss_pred             cCCCCcccccCCCCc-hHHHHHHHHHHHHh---C---CCCc--cccccCcccC----CCCC-----------------C-
Q 027582           49 GKDHLRCLIPCAIDQ-DPYFRMTRDVAPRI---G---YHKP--ALIESSFFPA----LQGE-----------------T-   97 (221)
Q Consensus        49 ~~ad~~~~vpvG~DQ-~~h~~laR~ia~~~---n---~~~p--~~l~~~~lp~----L~g~-----------------~-   97 (221)
                      +.+|   +...|.|| .-|+-.+|-....+   +   ..+|  .++.+.++-+    -+|.                 + 
T Consensus       519 ~PvD---~yi~G~dhailHLlyaRf~~~~l~~~~~~~~~~Pfk~l~~~G~Vl~~~~~~~G~~~~~~~~~~~~~~~~~~~~  595 (842)
T TIGR00396       519 LPVD---LYIGGAEHAILHLLYARFWHKFLYDIGYVSTKEPFKKLINQGMVLGFYYPPNGKSPPDELTERDEKAKDKSGG  595 (842)
T ss_pred             CCCc---EeeccHHHHHHHHHHHHHHHHHHHhccccCCCccHHHHhccceEEeeeecCCCCccChhhhccccccccccCC
Confidence            4565   57999999 67777777654322   2   1345  3445667766    4441                 0 


Q ss_pred             -------CCcCCCCCCCceecC
Q 027582           98 -------GKMSASDPNSAIYVT  112 (221)
Q Consensus        98 -------~KMSkS~~~s~I~L~  112 (221)
                             .|||||.+| .|.+.
T Consensus       596 ~~~~~~~~KMSKS~GN-~v~p~  616 (842)
T TIGR00396       596 ELVVVGYEKMSKSKGN-GIDPQ  616 (842)
T ss_pred             cccccchhhhhhcCCC-cCCHH
Confidence                   199999986 66553

The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches.

>COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]

Probab=88.37  E-value=0.28  Score=46.60  Aligned_cols=49  Identities=12%  Similarity=0.062  Sum_probs=44.1

Q ss_pred             ccccCCCCchHHHHHHHHHHHHhCCCCccccccCcccCCCCCCCCcCCCCC
Q 027582           55 CLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDP  105 (221)
Q Consensus        55 ~~vpvG~DQ~~h~~laR~ia~~~n~~~p~~l~~~~lp~L~g~~~KMSkS~~  105 (221)
                      |+|..|.|+..+-..=+-+.+.||.+.|...|.++|.+-+|  +||||++.
T Consensus       208 THviRG~d~~~nt~~q~~l~~~lg~~~P~~~H~~li~~~~g--~kLSKr~~  256 (472)
T COG0008         208 THVLRGEDHLDNTPRQIWLYEALGWPPPVYAHLPLLLNEDG--KKLSKRKG  256 (472)
T ss_pred             ceEEechhhccCCHHHHHHHHHcCCCCCcEEEeeeeecCCC--CeecCccC
Confidence            68999999999988889999999999999999999998444  69999986

>PF01921 tRNA-synt_1f: tRNA synthetases class I (K); InterPro: IPR002904 The aminoacyl-tRNA synthetases (6

Probab=88.22  E-value=0.064  Score=49.13  Aligned_cols=67  Identities=24%  Similarity=0.444  Sum_probs=32.3

Q ss_pred             ccccCCCCchH---HHHHHHHHH-HHhCCCCccccccCcccCCCCCCCCcCCCCCCCceecCC-----CHHHHHHHHhh
Q 027582           55 CLIPCAIDQDP---YFRMTRDVA-PRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTD-----SAKAIKNKINK  124 (221)
Q Consensus        55 ~~vpvG~DQ~~---h~~laR~ia-~~~n~~~p~~l~~~~lp~L~g~~~KMSkS~~~s~I~L~D-----~p~~I~~KI~k  124 (221)
                      ++-|.|.|+..   -...+.+|| +=||.+.|..+..-++ ++.|. +|||||.+| .|.+.|     +|+.++--+-+
T Consensus       236 dfEp~GKDH~~~GGS~d~~~~I~~~i~g~~pP~~~~YE~~-~~~g~-~kmSsSkG~-~~t~~e~L~~~~PE~lr~l~~~  311 (360)
T PF01921_consen  236 DFEPFGKDHASPGGSYDTSKRIAREILGYEPPVPFPYEFF-LDKGG-GKMSSSKGN-GITPEEWLEYAPPESLRYLMAR  311 (360)
T ss_dssp             SEEEEEHHHHCTTSHHHHHHHHHHHCC-----EEEEE--E-EES----------------HHHHHTTS-HHHHHHHHHC
T ss_pred             eeccCCCccCCCCCChhhHHHHHHHHhCCCCCCCCCeeEE-EeCCC-cccccCCCC-ccCHHHHHHhcCHHHHHHHHcc
Confidence            46899999888   899999999 6789888877664432 34553 599999986 555543     56666654444

1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Lysyl-tRNA synthetase (6.1.1.6 from EC) is an alpha 2 homodimer that belong to both class I and class II. In eubacteria and eukaryota lysyl-tRNA synthetases belong to class II in the same family as aspartyl tRNA synthetase. The class Ic lysyl-tRNA synthetase family is present in archaea and in a number of bacterial groups that include the alphaproteobacteria and spirochaetes[]. A refined crystal structures shows that the active site of LysU is shaped to position the substrates for the nucleophilic attack of the lysine carboxylate on the ATP alpha-phosphate. No residues are directly involved in catalysis, but a number of highly conserved amino acids and three metal ions coordinate the substrates and stabilise the pentavalent transition state. A loop close to the catalytic pocket, disordered in the lysine-bound structure, becomes ordered upon adenine binding [].; GO: 0000166 nucleotide binding, 0004824 lysine-tRNA ligase activity, 0005524 ATP binding, 0006430 lysyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IRX_A.

>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase

Probab=87.93  E-value=0.34  Score=45.25  Aligned_cols=52  Identities=23%  Similarity=0.162  Sum_probs=30.0

Q ss_pred             ccCCCCch-HHHHHHHHHHHH-hCC-CCccccccCcccCCCCCCCCcCCCCCCCceec
Q 027582           57 IPCAIDQD-PYFRMTRDVAPR-IGY-HKPALIESSFFPALQGETGKMSASDPNSAIYV  111 (221)
Q Consensus        57 vpvG~DQ~-~h~~laR~ia~~-~n~-~~p~~l~~~~lp~L~g~~~KMSkS~~~s~I~L  111 (221)
                      --+|.|-. +|+|--+-...- +|. +-+....+......+|  +|||||.+| .|.+
T Consensus       245 h~GG~DLifpHheneiaq~~A~~g~~~~~~~w~H~g~l~~~G--~KMSKSlGN-~i~~  299 (411)
T TIGR03447       245 QGGGSDLIFPHHEFSAAHAEAATGVRRMARHYVHAGMIGLDG--EKMSKSLGN-LVFV  299 (411)
T ss_pred             ccCcccccccchHhHHHHHHHhcCCCCcceEEEECCEECcCC--CCccCcCCC-CCCH
Confidence            35677743 566544444333 343 2233444444556677  799999986 7766

Members of this protein family are MshC, l-cysteine:1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an enzyme that uses ATP to ligate a Cys residue to a mycothiol precursor molecule, in the second to last step in mycothiol biosynthesis. This enzyme shows considerable homology to Cys--tRNA ligases, and many instances are misannotated as such. Mycothiol is found in Mycobacterium tuberculosis, Corynebacterium glutamicum, Streptomyces coelicolor, and various other members of the Actinobacteria. Mycothiol is an analog to glutathione.

>PRK12268 methionyl-tRNA synthetase; Reviewed

Probab=87.48  E-value=0.4  Score=46.09  Aligned_cols=55  Identities=25%  Similarity=0.409  Sum_probs=33.0

Q ss_pred             ccccCCCCchHHHH-HHHHHHHHhC--CCCc-cccccCcccCCCCCCCCcCCCCCCCceecCC
Q 027582           55 CLIPCAIDQDPYFR-MTRDVAPRIG--YHKP-ALIESSFFPALQGETGKMSASDPNSAIYVTD  113 (221)
Q Consensus        55 ~~vpvG~DQ~~h~~-laR~ia~~~n--~~~p-~~l~~~~lp~L~g~~~KMSkS~~~s~I~L~D  113 (221)
                      .+...|.|+.+++. +--.+..-.+  .+.| .++.+.++. ++|  +|||||.+| .|...|
T Consensus       289 ~~~~~G~D~~~Fh~~~~p~~l~~~~~~~~~P~~v~~~G~v~-~~G--~KMSKS~GN-~I~p~d  347 (556)
T PRK12268        289 SYYFIGKDNIPFHSIIWPAMLLGSGEPLKLPDEIVSSEYLT-LEG--GKFSKSRGW-GIWVDD  347 (556)
T ss_pred             EEEEEeeccCcchHHHHHHHHHhcCCCCCCCCEeeccCCEE-ECC--eeeccCCCc-ccCHHH
Confidence            35678999986443 3333333333  4445 344456664 566  799999986 666543

>PLN02563 aminoacyl-tRNA ligase

Probab=86.84  E-value=0.29  Score=50.37  Aligned_cols=41  Identities=10%  Similarity=-0.023  Sum_probs=26.3

Q ss_pred             cCCCCcccccCCCCc-hHHHHHHHHHHHHhC------CCCcc--ccccCcccC
Q 027582           49 GKDHLRCLIPCAIDQ-DPYFRMTRDVAPRIG------YHKPA--LIESSFFPA   92 (221)
Q Consensus        49 ~~ad~~~~vpvG~DQ-~~h~~laR~ia~~~n------~~~p~--~l~~~~lp~   92 (221)
                      +.+|   +..+|.|| .-|+-.+|-....+-      ..+|.  ++.+.+|-+
T Consensus       615 ~PvD---~yigG~dhailHLlY~Rfw~~~l~~~g~~~~~ePfk~ll~qGmVl~  664 (963)
T PLN02563        615 MPVD---LYVGGAEHAVLHLLYARFWHKVLYDIGVVSTKEPFQCLVNQGMILG  664 (963)
T ss_pred             CCCc---EeeccHHHHhhHhHHHHHHHHHHHHhhccCCcccHHHHhccceeec
Confidence            5565   57999999 578777887765432      14553  344566654

>PLN02882 aminoacyl-tRNA ligase

Probab=86.64  E-value=0.51  Score=49.53  Aligned_cols=51  Identities=22%  Similarity=0.100  Sum_probs=33.5

Q ss_pred             cccCCCCchHHHHHHHHHHHH---hCCCCcc-ccccCcccCCCCCCCCcCCCCCCCcee
Q 027582           56 LIPCAIDQDPYFRMTRDVAPR---IGYHKPA-LIESSFFPALQGETGKMSASDPNSAIY  110 (221)
Q Consensus        56 ~vpvG~DQ~~h~~laR~ia~~---~n~~~p~-~l~~~~lp~L~g~~~KMSkS~~~s~I~  110 (221)
                      ++.-|.||.... +.+-++-.   ||.+.|. ++.+.++-.=+|  +|||||.+| .|.
T Consensus       570 ~i~eG~Dq~RgW-f~~ll~~s~~l~~~~pfk~VivhG~vlde~G--~KMSKSlGN-vId  624 (1159)
T PLN02882        570 FVAEGLDQTRGW-FYTLMVLSTALFDKPAFKNLICNGLVLAEDG--KKMSKSLKN-YPD  624 (1159)
T ss_pred             EEEEecchhhhH-HHHHHHHHHHhcCCCCcceeEEccEEECCCC--CCcccCCCC-CCC
Confidence            678999998854 44444443   4555443 344677665566  799999986 553

>KOG0432 consensus Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]

Probab=86.53  E-value=0.53  Score=47.57  Aligned_cols=24  Identities=29%  Similarity=0.311  Sum_probs=19.9

Q ss_pred             cccccCcccCCCCCCCCcCCCCCCCce
Q 027582           83 ALIESSFFPALQGETGKMSASDPNSAI  109 (221)
Q Consensus        83 ~~l~~~~lp~L~g~~~KMSkS~~~s~I  109 (221)
                      .++.|++|-.-+|  .|||||.+| .|
T Consensus       579 ~V~LH~mVRDa~G--RKMSKSLGN-VI  602 (995)
T KOG0432|consen  579 EVLLHGLVRDAHG--RKMSKSLGN-VI  602 (995)
T ss_pred             heeechhhccccc--cccchhhcc-cc
Confidence            4567899999998  699999987 44

>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]

Probab=86.36  E-value=0.8  Score=44.61  Aligned_cols=72  Identities=18%  Similarity=0.162  Sum_probs=50.4

Q ss_pred             cCCCCcccccCCCCchHHHHHHHHHHHHhCCCCcc-ccccCcccCC-CCCCCCcCCCCCCCceecCCCHHHHHHHH
Q 027582           49 GKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPA-LIESSFFPAL-QGETGKMSASDPNSAIYVTDSAKAIKNKI  122 (221)
Q Consensus        49 ~~ad~~~~vpvG~DQ~~h~~laR~ia~~~n~~~p~-~l~~~~lp~L-~g~~~KMSkS~~~s~I~L~D~p~~I~~KI  122 (221)
                      +++|. .+--+|.||..|+.-.+.++...|+..+. .+.+-.+... .|...||||-.++ .|.|.|=-+++.+|-
T Consensus       332 ~~~d~-~IyV~gadq~~~~~ql~~~l~~~g~~~~~~~~~h~~~~l~~~~~g~kmStR~G~-~vtl~dllde~~era  405 (577)
T COG0018         332 RGFDK-LIYVLGADQHGHFKQLKAVLELLGYGPDKEVLLHQGVGLVRGGEGVKMSTRAGN-VVTLDDLLDEAGERA  405 (577)
T ss_pred             cCCCE-EEEEeCCcchhHHHHHHHHHHHhcCCCccceEEEEEEeeeECCCCccccccCCc-eEEHHHHHHHHHHHh
Confidence            34543 45679999999999999999999996663 3332222222 2233689999886 999988877777444

>COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis]

Probab=85.71  E-value=0.52  Score=45.01  Aligned_cols=60  Identities=27%  Similarity=0.369  Sum_probs=39.9

Q ss_pred             cCCCCcccccCCCCchH---HHHHHHHHHH-HhCCCCccccccCcccCCCCCCCCcCCCCCCCceecCCC
Q 027582           49 GKDHLRCLIPCAIDQDP---YFRMTRDVAP-RIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDS  114 (221)
Q Consensus        49 ~~ad~~~~vpvG~DQ~~---h~~laR~ia~-~~n~~~p~~l~~~~lp~L~g~~~KMSkS~~~s~I~L~D~  114 (221)
                      ++.|   +-|-|.|+.-   -..-+++|++ =||++.|..+..-. -+|+| ++|||||.++ .|.+.|=
T Consensus       228 lgVd---~EPfGKDH~a~ggSydtg~~I~~ei~g~~pP~~~~YE~-i~lkg-~~~mSsSkG~-~i~~~dw  291 (521)
T COG1384         228 LGVD---FEPFGKDHAAAGGSYDTGKRIAREIFGYEPPVPFVYEW-ILLKG-GGKMSSSKGN-VISLSDW  291 (521)
T ss_pred             cCcc---cccCCcccccccCchHHHHHHHHHhcCCCCCCCCceEE-EEecC-CcccccCCCc-EEcHHHH
Confidence            4553   5788988653   3456677777 57877776655432 34556 4799999875 7776653

>PLN02224 methionine-tRNA ligase

Probab=85.16  E-value=5.3  Score=39.29  Aligned_cols=65  Identities=17%  Similarity=0.164  Sum_probs=36.8

Q ss_pred             cccCCCCchHHHHH-HHHHHHHhCCCCccccc-cCcccCCCCCCCCcCCCCCCCceecCC-----CHHHHHHHHhh
Q 027582           56 LIPCAIDQDPYFRM-TRDVAPRIGYHKPALIE-SSFFPALQGETGKMSASDPNSAIYVTD-----SAKAIKNKINK  124 (221)
Q Consensus        56 ~vpvG~DQ~~h~~l-aR~ia~~~n~~~p~~l~-~~~lp~L~g~~~KMSkS~~~s~I~L~D-----~p~~I~~KI~k  124 (221)
                      +-.+|.|-.+++-+ --...-..|.+-|..+. +.++ .++|  +|||||.+| .|+..|     +++.++=-+.+
T Consensus       324 v~~iGKDii~fH~i~wpa~l~~~g~~~P~~i~~~g~l-~~eG--~KMSKS~GN-~i~p~e~l~~ygaD~~R~yLl~  395 (616)
T PLN02224        324 LHLIGKDILRFHAVYWPAMLMSAGLELPKMVFGHGFL-TKDG--MKMGKSLGN-TLEPFELVQKFGPDAVRYFFLR  395 (616)
T ss_pred             eEEEeecccccHHHHHHHHHHHCCCCCCcEEEecccE-ecCC--ccccccCCc-cCCHHHHHHHcCcHHHHHHHHh
Confidence            45678898875222 11112224566664443 5554 5677  799999986 776554     34444444443

>PTZ00402 glutamyl-tRNA synthetase; Provisional

Probab=84.75  E-value=0.64  Score=45.41  Aligned_cols=66  Identities=11%  Similarity=-0.029  Sum_probs=53.1

Q ss_pred             chhhhhccCCCCCCCCcccccCCCCcccccCCCCchHHHHHHHHHHHHhCCCCccccccCcccCCCCCCCCcCCCCC
Q 027582           29 SFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDP  105 (221)
Q Consensus        29 ~YP~lqaa~~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~~laR~ia~~~n~~~p~~l~~~~lp~L~g~~~KMSkS~~  105 (221)
                      .||..+=|.+.-    |.+ .+.   |+|..|.|...+-..=.-+.+.||.+.|...+.++ .+++|  .||||+..
T Consensus       229 gyPtYdfA~vVD----D~l-~gI---THvlRg~E~l~~tp~q~~L~~aLg~~~P~~~h~~r-Ln~~g--~kLSKRkl  294 (601)
T PTZ00402        229 AYPTYDFCCPII----DSV-EGV---THALRTNEYHDRNDQYYWFCDALGIRKPIVEDFSR-LNMEY--SVMSKRKL  294 (601)
T ss_pred             eeeccCcceeeE----ccc-cCC---ceEeechhhhhCcHHHHHHHHHhCCCCceEEEEee-EcCCC--CcccccCC
Confidence            788888775554    543 222   78999999999988888999999999999988886 47887  69999974

>TIGR00398 metG methionyl-tRNA synthetase

Probab=84.21  E-value=0.63  Score=44.46  Aligned_cols=54  Identities=20%  Similarity=0.291  Sum_probs=33.3

Q ss_pred             cccCCCCchHHHHHH-HHHHHHhCCCCccc-cccCcccCCCCCCCCcCCCCCCCceecCC
Q 027582           56 LIPCAIDQDPYFRMT-RDVAPRIGYHKPAL-IESSFFPALQGETGKMSASDPNSAIYVTD  113 (221)
Q Consensus        56 ~vpvG~DQ~~h~~la-R~ia~~~n~~~p~~-l~~~~lp~L~g~~~KMSkS~~~s~I~L~D  113 (221)
                      +...|.|..+++-+- --+..-.+++.|.. +.+.++. +.|  +|||||.+| .|.+.|
T Consensus       285 v~~~G~Di~~~h~~~~~a~l~~~~~~~~~~~~~~g~v~-~~g--~KmSKS~Gn-~i~~~d  340 (530)
T TIGR00398       285 IHFIGKDIVRFHTIYWPAMLMGLGLPLPTQVFSHGYLT-VEG--GKMSKSLGN-VVDPSD  340 (530)
T ss_pred             EEEEecccchhHHHHHHHHHHhCCCCCCCEEEeeccEE-ECC--ceecccCCc-eecHHH
Confidence            568999999864332 12233345555533 3455554 345  799999986 786654

The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to this model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (sma

>PRK00390 leuS leucyl-tRNA synthetase; Validated

Probab=84.16  E-value=0.46  Score=48.02  Aligned_cols=52  Identities=17%  Similarity=0.102  Sum_probs=33.0

Q ss_pred             cCCCCcccccCCCCc-hHHHHHHHHHHHHhC------CCCc--cccccCcccCCCCCCCCcCCCCCCCceecC
Q 027582           49 GKDHLRCLIPCAIDQ-DPYFRMTRDVAPRIG------YHKP--ALIESSFFPALQGETGKMSASDPNSAIYVT  112 (221)
Q Consensus        49 ~~ad~~~~vpvG~DQ-~~h~~laR~ia~~~n------~~~p--~~l~~~~lp~L~g~~~KMSkS~~~s~I~L~  112 (221)
                      |.+|   +...|.|| .-|+-.+|-....+-      ...|  .++++.+|        |||||.+| .|...
T Consensus       522 ~P~D---ly~~G~D~~i~hL~y~Rf~~~~l~~~~~~~~~~Pfk~v~~~G~v--------KMSKS~GN-~i~p~  582 (805)
T PRK00390        522 LPVD---QYIGGIEHAVLHLLYARFFTKVLRDLGLVSSDEPFKKLLTQGMV--------KMSKSKGN-VVDPD  582 (805)
T ss_pred             CCCc---EEeccHHHHHHHHHHHHHHHHHHHHhhcccCCcchhhheecCcE--------EeCCCCCC-CCCHH
Confidence            4565   57899999 577777775543221      1344  34455665        99999987 66543

>PRK12451 arginyl-tRNA synthetase; Reviewed

Probab=83.52  E-value=1.3  Score=42.98  Aligned_cols=63  Identities=16%  Similarity=0.184  Sum_probs=44.5

Q ss_pred             CCCCcccccCCCCchHHHHHHHHHHHHhCCCCcc-c--cccCcccCCCCCCCCcCCCCCCCceecCCCHHH
Q 027582           50 KDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPA-L--IESSFFPALQGETGKMSASDPNSAIYVTDSAKA  117 (221)
Q Consensus        50 ~ad~~~~vpvG~DQ~~h~~laR~ia~~~n~~~p~-~--l~~~~lp~L~g~~~KMSkS~~~s~I~L~D~p~~  117 (221)
                      +.|. .+-.+|.||..|+.-...+++.+|+..+. +  +...+|- +.|  +||||-.++ .|.|.|=-++
T Consensus       323 ~~d~-~IyV~g~dq~~h~~~l~~~~~~lg~~~~~~l~h~~~g~V~-~~g--~kmStR~G~-~v~l~dLlde  388 (562)
T PRK12451        323 GFDK-ALYVVGPEQSLHFNQFFTVLKKLGYTWVDGMEHVPFGLIL-KDG--KKMSTRKGR-VVLLEEVLEE  388 (562)
T ss_pred             CCCE-EEEEeCCcHHHHHHHHHHHHHHcCCCcccCeEEEeeeeEe-cCC--CCCcCCCCC-eeEHHHHHHH
Confidence            4442 35589999999999999999999975332 2  2334453 455  699999885 8887655444

>PTZ00427 isoleucine-tRNA ligase, putative; Provisional

Probab=83.37  E-value=0.87  Score=48.02  Aligned_cols=53  Identities=23%  Similarity=0.156  Sum_probs=34.0

Q ss_pred             cCCCCcccccCCCCchHHH---HHHHHHHHHhCCCCc--cccccCcccCCCCCCCCcCCCCCCCce
Q 027582           49 GKDHLRCLIPCAIDQDPYF---RMTRDVAPRIGYHKP--ALIESSFFPALQGETGKMSASDPNSAI  109 (221)
Q Consensus        49 ~~ad~~~~vpvG~DQ~~h~---~laR~ia~~~n~~~p--~~l~~~~lp~L~g~~~KMSkS~~~s~I  109 (221)
                      |.+|   +++-|.||....   ++..-++ -||. .|  .++.+.++..-+|  +|||||.+| .|
T Consensus       672 fPaD---~i~eG~Dq~rgWf~s~l~~s~~-l~~~-~PfK~VlvHG~Vld~dG--~KMSKSlGN-vI  729 (1205)
T PTZ00427        672 FPAD---FIAEGLDQTRGWFYTLLVISTL-LFDK-APFKNLICNGLVLASDG--KKMSKRLKN-YP  729 (1205)
T ss_pred             CCce---EEEEecchhccHHHHHHHHHHH-hcCC-CCcceeEEccEEEcCCC--CCcccCCCC-CC
Confidence            4565   578999998632   2333332 3443 34  4455777777777  799999986 55

>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]

Probab=81.15  E-value=2.4  Score=43.54  Aligned_cols=57  Identities=25%  Similarity=0.326  Sum_probs=36.2

Q ss_pred             cccCCCCchH---HHHHHHHHHHHhCCCCc--cccccCcccCCCCCCCCcCCCCCCCceecCCCHHHHHHH
Q 027582           56 LIPCAIDQDP---YFRMTRDVAPRIGYHKP--ALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNK  121 (221)
Q Consensus        56 ~vpvG~DQ~~---h~~laR~ia~~~n~~~p--~~l~~~~lp~L~g~~~KMSkS~~~s~I~L~D~p~~I~~K  121 (221)
                      ++.=|.||..   |--|.--.| -||. .|  .++.+.++..=+|  +|||||.+| +|    +|.+|.+|
T Consensus       558 ~~lEGsDQ~RGWF~Ssl~~s~a-~~~~-aPYk~vltHGfvlDe~G--rKMSKSlGN-~v----~P~~V~~~  619 (933)
T COG0060         558 FYLEGSDQTRGWFYSSLLTSTA-LFGR-APYKNVLTHGFVLDEKG--RKMSKSLGN-VV----DPQDVIDK  619 (933)
T ss_pred             EEEEeccccchhHHHHHHHHHH-HcCC-chHHHHhhcccEECCCC--CCccccCCC-cC----CHHHHHHh
Confidence            5788999964   333333332 3442 34  5677888877777  799999987 44    45555554

>PLN03233 putative glutamate-tRNA ligase; Provisional

Probab=80.93  E-value=1  Score=43.30  Aligned_cols=65  Identities=8%  Similarity=0.011  Sum_probs=51.0

Q ss_pred             chhhhhccCCCCCCCCcccccCCCCcccccCCCCchHHHHHHHHHHHHhCCCCccccccCcccCCCCCCCCcCCCC
Q 027582           29 SFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASD  104 (221)
Q Consensus        29 ~YP~lqaa~~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~~laR~ia~~~n~~~p~~l~~~~lp~L~g~~~KMSkS~  104 (221)
                      .||..+=|.+.-    |.+. +.   |+|..|.|...+-..=.-+.+.+|.+.|.. +++...++.|  .||||+.
T Consensus       187 ~~PtY~fA~~VD----D~l~-gI---THviRg~E~~~~t~~q~~l~~aLg~~~P~~-~~f~rln~~~--~kLSKR~  251 (523)
T PLN03233        187 AYPTYDLACPIV----DSIE-GV---THALRTTEYDDRDAQFFWIQKALGLRRPRI-HAFARMNFMN--TVLSKRK  251 (523)
T ss_pred             ceeccCCceeee----cccc-CC---CeEEechhhhcCCHHHHHHHHHhCCCCCee-eeeEEECCCC--CcccccC
Confidence            488888886665    5432 22   789999999999888888999999988886 4466677777  6999996

>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]

Probab=80.62  E-value=15  Score=37.43  Aligned_cols=54  Identities=20%  Similarity=0.172  Sum_probs=33.2

Q ss_pred             ccCCCCchH-HHHHHHHHHHHhC---C---CCcc--ccccCcccCCCCCCCCcCCCCCCCceecCC
Q 027582           57 IPCAIDQDP-YFRMTRDVAPRIG---Y---HKPA--LIESSFFPALQGETGKMSASDPNSAIYVTD  113 (221)
Q Consensus        57 vpvG~DQ~~-h~~laR~ia~~~n---~---~~p~--~l~~~~lp~L~g~~~KMSkS~~~s~I~L~D  113 (221)
                      -.+|+|+.. |+..+|-.-+-+.   +   .+|.  ++...+|.+-.|  +|||||.+| .|.+.+
T Consensus       530 yigG~ehavlHLly~rF~Hkal~d~g~~p~~epf~~L~~qGmVl~~~g--~KMSKSKgN-~v~p~~  592 (814)
T COG0495         530 YIGGIEHAVLHLLYFRFFHKALFDEGLVPKDEPFKKLITQGMVLGEEG--EKMSKSKGN-VVDPEE  592 (814)
T ss_pred             eecchhHHHHHHHHHHHHHHHhcccCcCCCccchhhhhccceEEecCC--CccccccCC-CCCHHH
Confidence            368888876 5566665544332   1   3343  334567766655  699999986 666544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	221
2quh_A	477	Crystal Structures Of Human Tryptophanyl-Trna Synth		2e-67
1ulh_A	390	A Short Peptide Insertion Crucial For Angiostatic A		2e-67
1o5t_A	378	Crystal Structure Of The Aminoacylation Catalytic F		2e-67
2ake_A	384	Structure Of Human Tryptophanyl-Trna Synthetase In		2e-67
2quj_B	384	Crystal Structures Of Human Tryptophanyl-Trna Synth		2e-67
2azx_A	477	Charged And Uncharged Trnas Adopt Distinct Conforma		1e-64
1r6t_A	477	Crystal Structure Of Human Tryptophanyl-Trna Synthe		2e-64
1r6u_A	437	Crystal Structure Of An Active Fragment Of Human Tr		2e-64
3hv0_A	393	Tryptophanyl-Trna Synthetase From Cryptosporidium P		2e-51
3i05_A	395	Tryptophanyl-Trna Synthetase From Trypanosoma Bruce		1e-49
3kt0_A	438	Crystal Structure Of S. Cerevisiae Tryptophanyl-Trn		9e-49
2ip1_A	432	Crystal Structure Analysis Of S. Cerevisiae Tryptop		9e-49
3tze_A	406	Crystal Structure Of A Tryptophanyl-Trna Synthetase		5e-42
3foc_A	451	Tryptophanyl-Trna Synthetase From Giardia Lamblia L		5e-41
3jxe_A	392	Crystal Structure Of Pyrococcus Horikoshii Tryptoph		7e-31
3hzr_A	386	Tryptophanyl-Trna Synthetase Homolog From Entamoeba		3e-18
3a04_A	372	Crystal Structure Of Tryptophanyl-Trna Synthetase F		1e-13

>pdb|2QUH|A Chain A, Crystal Structures Of Human Tryptophanyl-Trna Synthetase In Complex With Trp Length = 477

Iteration: 1
 Score =  251 bits (642), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 119/216 (55%), Positives = 152/216 (70%)
Query: 1   MVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVXXXXXXXXXXXXGKDHLRCLIPCA 60
           +VK+ K VT+N+V GIFGFT  D IGK+SFP +QA              +  ++CLIPCA
Sbjct: 251 VVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCA 310
Query: 61  IDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSXXXXXX 120
           IDQDPYFRMTRDVAPRIGY KPAL+ S+FFPALQG   KMSASDPNS+I++TD+      
Sbjct: 311 IDQDPYFRMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNSSIFLTDTAKQIKT 370
Query: 121 XXXXYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEV 180
               +AFSGG++++E HR+ G N +VD+   YL+FFLEDD +LE I+K+Y +G MLTGE+
Sbjct: 371 KVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQIRKDYTSGAMLTGEL 430
Query: 181 KQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 216
           K+ L +VL  L+  HQ  R  VTDE+V  FM  R L
Sbjct: 431 KKALIEVLQPLIAEHQARRKEVTDEIVKEFMTPRKL 466

>pdb|1ULH|A Chain A, A Short Peptide Insertion Crucial For Angiostatic Activity Of Human Tryptophanyl-Trna Synthetase Length = 390

Iteration: 1
 Score =  251 bits (642), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 119/216 (55%), Positives = 152/216 (70%)
Query: 1   MVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVXXXXXXXXXXXXGKDHLRCLIPCA 60
           +VK+ K VT+N+V GIFGFT  D IGK+SFP +QA              +  ++CLIPCA
Sbjct: 170 VVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCA 229
Query: 61  IDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSXXXXXX 120
           IDQDPYFRMTRDVAPRIGY KPAL+ S+FFPALQG   KMSASDPNS+I++TD+      
Sbjct: 230 IDQDPYFRMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNSSIFLTDTAKQIKT 289
Query: 121 XXXXYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEV 180
               +AFSGG++++E HR+ G N +VD+   YL+FFLEDD +LE I+K+Y +G MLTGE+
Sbjct: 290 KVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQIRKDYTSGAMLTGEL 349
Query: 181 KQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 216
           K+ L +VL  L+  HQ  R  VTDE+V  FM  R L
Sbjct: 350 KKALIEVLQPLIAEHQARRKEVTDEIVKEFMTPRKL 385

>pdb|1O5T|A Chain A, Crystal Structure Of The Aminoacylation Catalytic Fragment Of Human Tryptophanyl-Trna Synthetase Length = 378

Iteration: 1
 Score =  251 bits (641), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 119/216 (55%), Positives = 152/216 (70%)
Query: 1   MVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVXXXXXXXXXXXXGKDHLRCLIPCA 60
           +VK+ K VT+N+V GIFGFT  D IGK+SFP +QA              +  ++CLIPCA
Sbjct: 158 VVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCA 217
Query: 61  IDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSXXXXXX 120
           IDQDPYFRMTRDVAPRIGY KPAL+ S+FFPALQG   KMSASDPNS+I++TD+      
Sbjct: 218 IDQDPYFRMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNSSIFLTDTAKQIKT 277
Query: 121 XXXXYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEV 180
               +AFSGG++++E HR+ G N +VD+   YL+FFLEDD +LE I+K+Y +G MLTGE+
Sbjct: 278 KVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQIRKDYTSGAMLTGEL 337
Query: 181 KQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 216
           K+ L +VL  L+  HQ  R  VTDE+V  FM  R L
Sbjct: 338 KKALIEVLQPLIAEHQARRKEVTDEIVKEFMTPRKL 373

>pdb|2AKE|A Chain A, Structure Of Human Tryptophanyl-Trna Synthetase In Complex With Trna(Trp) Length = 384

Iteration: 1
 Score =  251 bits (641), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 119/216 (55%), Positives = 152/216 (70%)
Query: 1   MVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVXXXXXXXXXXXXGKDHLRCLIPCA 60
           +VK+ K VT+N+V GIFGFT  D IGK+SFP +QA              +  ++CLIPCA
Sbjct: 158 VVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCA 217
Query: 61  IDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSXXXXXX 120
           IDQDPYFRMTRDVAPRIGY KPAL+ S+FFPALQG   KMSASDPNS+I++TD+      
Sbjct: 218 IDQDPYFRMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNSSIFLTDTAKQIKT 277
Query: 121 XXXXYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEV 180
               +AFSGG++++E HR+ G N +VD+   YL+FFLEDD +LE I+K+Y +G MLTGE+
Sbjct: 278 KVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQIRKDYTSGAMLTGEL 337
Query: 181 KQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 216
           K+ L +VL  L+  HQ  R  VTDE+V  FM  R L
Sbjct: 338 KKALIEVLQPLIAEHQARRKEVTDEIVKEFMTPRKL 373

>pdb|2AZX|A Chain A, Charged And Uncharged Trnas Adopt Distinct Conformations When Complexed With Human Tryptophanyl-Trna Synthetase Length = 477

Iteration: 1
 Score =  242 bits (617), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 115/216 (53%), Positives = 148/216 (68%)
Query: 1   MVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVXXXXXXXXXXXXGKDHLRCLIPCA 60
           +VK+ K VT+N+V GIFGFT  D IGK+SFP +QA              +  ++CLIPCA
Sbjct: 251 VVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCA 310
Query: 61  IDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSXXXXXX 120
           IDQDPYFR TRDVAPRIGY KPAL+ S+FFPALQG   K SASDPNS+I++TD+      
Sbjct: 311 IDQDPYFRXTRDVAPRIGYPKPALLHSTFFPALQGAQTKXSASDPNSSIFLTDTAKQIKT 370
Query: 121 XXXXYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEV 180
               +AFSGG++++E HR+ G N +VD+   YL+FFLEDD +LE I+K+Y +G  LTGE+
Sbjct: 371 KVNKHAFSGGRDTIEEHRQFGGNCDVDVSFXYLTFFLEDDDKLEQIRKDYTSGAXLTGEL 430
Query: 181 KQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 216
           K+ L +VL  L+  HQ  R  VTDE+V  F   R L
Sbjct: 431 KKALIEVLQPLIAEHQARRKEVTDEIVKEFXTPRKL 466

>pdb|1R6T|A Chain A, Crystal Structure Of Human Tryptophanyl-Trna Synthetase Length = 477

Iteration: 1
 Score =  241 bits (616), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 115/216 (53%), Positives = 148/216 (68%)
Query: 1   MVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVXXXXXXXXXXXXGKDHLRCLIPCA 60
           +VK+ K VT+N+V GIFGFT  D IGK+SFP +QA              +  ++CLIPCA
Sbjct: 251 VVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCA 310
Query: 61  IDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSXXXXXX 120
           IDQDPYFR TRDVAPRIGY KPAL+ S+FFPALQG   K SASDPNS+I++TD+      
Sbjct: 311 IDQDPYFRXTRDVAPRIGYPKPALLHSTFFPALQGAQTKXSASDPNSSIFLTDTAKQIKT 370
Query: 121 XXXXYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEV 180
               +AFSGG++++E HR+ G N +VD+   YL+FFLEDD +LE I+K+Y +G  LTGE+
Sbjct: 371 KVNKHAFSGGRDTIEEHRQFGGNCDVDVSFXYLTFFLEDDDKLEQIRKDYTSGAXLTGEL 430
Query: 181 KQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 216
           K+ L +VL  L+  HQ  R  VTDE+V  F   R L
Sbjct: 431 KKALIEVLQPLIAEHQARRKEVTDEIVKEFXTPRKL 466

>pdb|1R6U|A Chain A, Crystal Structure Of An Active Fragment Of Human Tryptophanyl-Trna Synthetase With Cytokine Activity Length = 437

Iteration: 1
 Score =  241 bits (615), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 115/216 (53%), Positives = 148/216 (68%)
Query: 1   MVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVXXXXXXXXXXXXGKDHLRCLIPCA 60
           +VK+ K VT+N+V GIFGFT  D IGK+SFP +QA              +  ++CLIPCA
Sbjct: 204 VVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCA 263
Query: 61  IDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSXXXXXX 120
           IDQDPYFR TRDVAPRIGY KPAL+ S+FFPALQG   K SASDPNS+I++TD+      
Sbjct: 264 IDQDPYFRXTRDVAPRIGYPKPALLHSTFFPALQGAQTKXSASDPNSSIFLTDTAKQIKT 323
Query: 121 XXXXYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEV 180
               +AFSGG++++E HR+ G N +VD+   YL+FFLEDD +LE I+K+Y +G  LTGE+
Sbjct: 324 KVNKHAFSGGRDTIEEHRQFGGNCDVDVSFXYLTFFLEDDDKLEQIRKDYTSGAXLTGEL 383
Query: 181 KQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 216
           K+ L +VL  L+  HQ  R  VTDE+V  F   R L
Sbjct: 384 KKALIEVLQPLIAEHQARRKEVTDEIVKEFXTPRKL 419

>pdb|3HV0|A Chain A, Tryptophanyl-Trna Synthetase From Cryptosporidium Parvum Length = 393

Iteration: 1
 Score =  198 bits (504), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 95/210 (45%), Positives = 134/210 (63%)
Query: 1   MVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVXXXXXXXXXXXXGKDHLRCLIPCA 60
           ++++ K ++ +++  IFGF    ++GK +FP VQA             G+  + CL+P A
Sbjct: 168 ILRIEKKISCSQIKSIFGFKDSCNVGKFAFPAVQAAPAFSSSFPHIFGGRTDIHCLVPHA 227
Query: 61  IDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSXXXXXX 120
           IDQDPYFRM RDVAPR+GY KP+ I S F P+LQG   KMSAS  NS+I+V D+      
Sbjct: 228 IDQDPYFRMVRDVAPRLGYLKPSSIHSIFLPSLQGSQTKMSASVQNSSIFVNDNEESIRN 287
Query: 121 XXXXYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEV 180
               YAFSGGQ + E  R+LGANL+VD+  +YL F +EDD +LE I K+Y +G ML+GE+
Sbjct: 288 KIMKYAFSGGQATEEEQRRLGANLDVDVSWQYLRFLMEDDEKLEEIGKKYSSGEMLSGEI 347
Query: 181 KQRLAKVLTELVERHQVARAAVTDEMVDAF 210
           K  L + L +L + HQ  R A+ D+++  F
Sbjct: 348 KSILVQELVKLTKNHQKNREAINDDVIAKF 377

>pdb|3I05|A Chain A, Tryptophanyl-Trna Synthetase From Trypanosoma Brucei Length = 395

Iteration: 1
 Score =  192 bits (488), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 99/215 (46%), Positives = 134/215 (62%), Gaps = 2/215 (0%)
Query: 1   MVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVXXXXXXXXXXXX-GKDHLRCLIPC 59
           + K+ +  T ++V G FGF  ED+ G+  FP +QA                 ++ CLIP 
Sbjct: 171 VAKIERAFTASQVRGCFGFAMEDNCGRWMFPAIQAAPSFSAAFPHIFPPSMGNVFCLIPQ 230
Query: 60  AIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSXXXXX 119
           AIDQDPYFR+TRD+APR+GY KPA+I S FFP L G  GKMS+S   +A+ +TD+     
Sbjct: 231 AIDQDPYFRLTRDIAPRLGYLKPAVIHSKFFPGLSGPKGKMSSSS-GTAVLLTDTEKMVK 289
Query: 120 XXXXXYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGE 179
                +AFSGG  + + H  LGAN+EVD+P+++LSFFLEDD EL  +KKEY  G ++TGE
Sbjct: 290 DKINKHAFSGGGATKQEHFLLGANVEVDVPIQWLSFFLEDDEELARVKKEYMLGRIMTGE 349
Query: 180 VKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVR 214
           VK+ L   +T + + HQ  R  VTDE V  F + R
Sbjct: 350 VKKLLINTITAITKTHQEKRKLVTDEDVQLFTSTR 384

>pdb|3KT0|A Chain A, Crystal Structure Of S. Cerevisiae Tryptophanyl-Trna Synthet Length = 438

Iteration: 1
 Score =  189 bits (480), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 97/216 (44%), Positives = 130/216 (60%)
Query: 1   MVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVXXXXXXXXXXXXGKDHLRCLIPCA 60
           +V+V++ +T +    +FGF   D IGK  F  +Q                D   CLIPCA
Sbjct: 197 VVRVSRQITGSTAKAVFGFNDSDCIGKFHFASIQIATAFPSSFPNVLGLPDKTPCLIPCA 256
Query: 61  IDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSXXXXXX 120
           IDQDPYFR+ RDVA ++ Y KPAL+ S FFPALQG T KMSASD  +AI++TD+      
Sbjct: 257 IDQDPYFRVCRDVADKLKYSKPALLHSRFFPALQGSTTKMSASDDTTAIFMTDTPKQIQK 316
Query: 121 XXXXYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEV 180
               YAFSGGQ S +LHR+LG N +VD+  +YLSFF +DD  L+    +Y +G +L+GE+
Sbjct: 317 KINKYAFSGGQVSADLHRELGGNPDVDVAYQYLSFFKDDDVFLKECYDKYKSGELLSGEM 376
Query: 181 KQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 216
           K+   + L E V+  Q  RA V +E +D FM    L
Sbjct: 377 KKLCIETLQEFVKAFQERRAQVDEETLDKFMVPHKL 412

>pdb|2IP1|A Chain A, Crystal Structure Analysis Of S. Cerevisiae Tryptophanyl Trna Synthetase Length = 432

Iteration: 1
 Score =  189 bits (480), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 97/216 (44%), Positives = 130/216 (60%)
Query: 1   MVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVXXXXXXXXXXXXGKDHLRCLIPCA 60
           +V+V++ +T +    +FGF   D IGK  F  +Q                D   CLIPCA
Sbjct: 197 VVRVSRQITGSTAKAVFGFNDSDCIGKFHFASIQIATAFPSSFPNVLGLPDKTPCLIPCA 256
Query: 61  IDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSXXXXXX 120
           IDQDPYFR+ RDVA ++ Y KPAL+ S FFPALQG T KMSASD  +AI++TD+      
Sbjct: 257 IDQDPYFRVCRDVADKLKYSKPALLHSRFFPALQGSTTKMSASDDTTAIFMTDTPKQIQK 316
Query: 121 XXXXYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEV 180
               YAFSGGQ S +LHR+LG N +VD+  +YLSFF +DD  L+    +Y +G +L+GE+
Sbjct: 317 KINKYAFSGGQVSADLHRELGGNPDVDVAYQYLSFFKDDDVFLKECYDKYKSGELLSGEM 376
Query: 181 KQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 216
           K+   + L E V+  Q  RA V +E +D FM    L
Sbjct: 377 KKLCIETLQEFVKAFQERRAQVDEETLDKFMVPHKL 412

>pdb|3TZE|A Chain A, Crystal Structure Of A Tryptophanyl-Trna Synthetase From Encephalitozoon Cuniculi Bound To Tryptophan Length = 406

Iteration: 1
 Score =  167 bits (423), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 81/213 (38%), Positives = 128/213 (60%), Gaps = 3/213 (1%)
Query: 1   MVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVXXXXXXXXXXXXGKDHLRCLIPCA 60
           ++K++K +  N+ + +FGF    +IG+V FP  +              G     CL+P A
Sbjct: 194 ILKISKTINLNEAIKVFGFDMSSNIGQVGFPAKEIAPCFSSSFRFIGKGA---MCLVPAA 250
Query: 61  IDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSXXXXXX 120
           +DQDP+FR+ RD A  +G  KP+ I  S  P L+G   KMSASDPNS+IY+ D+      
Sbjct: 251 VDQDPFFRLARDKAKALGEKKPSSIYVSLLPDLKGVNRKMSASDPNSSIYLDDAQDTIRK 310
Query: 121 XXXXYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEV 180
               YA+SGG++++E HR+ G +++VD+P +YL +FL+DD ELE  +  Y  G + + E+
Sbjct: 311 KIIAYAYSGGRKTLEEHREKGGDIDVDVPFEYLKYFLDDDQELEKYRSGYIKGEITSKEM 370
Query: 181 KQRLAKVLTELVERHQVARAAVTDEMVDAFMAV 213
           K++   V+ E V R+Q +R  VTD+ + AF+ +
Sbjct: 371 KEKCVVVIQEFVSRYQESRKRVTDDDLRAFIDI 403

>pdb|3FOC|A Chain A, Tryptophanyl-Trna Synthetase From Giardia Lamblia Length = 451

Iteration: 1
 Score =  164 bits (414), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 79/162 (48%), Positives = 105/162 (64%)
Query: 55  CLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDS 114
           CLI   I+QDPYFR+ RD+APR+G+ K A +   F P LQG   KMSASDPNSAIY+TD+
Sbjct: 289 CLIASGIEQDPYFRLARDLAPRMGHPKNAYLLGKFLPGLQGSGTKMSASDPNSAIYLTDT 348
Query: 115 XXXXXXXXXXYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGG 174
                     YAFSGG+++ E HR  GA+L VD+ V+YL  F++DDAELE +K +Y  G 
Sbjct: 349 PAQIKNKINRYAFSGGRDTEEEHRAFGADLSVDVSVRYLEVFMKDDAELEKLKADYKTGK 408
Query: 175 MLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 216
           +LTGEVK  L  +L  L++ H   R  V   M+++F   + L
Sbjct: 409 LLTGEVKATLIGILQGLIKEHAERRDKVDTTMIESFTVKKEL 450

>pdb|3JXE|A Chain A, Crystal Structure Of Pyrococcus Horikoshii Tryptophanyl-Trna Synthetase In Complex With Trpamp Length = 392

Iteration: 1
 Score =  130 bits (326), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 72/210 (34%), Positives = 111/210 (52%), Gaps = 12/210 (5%)
Query: 2   VKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVXXXXXXXXXXXXGKDHLRCLIPCAI 61
           + +AK + ++    +FGFT +  IG + FP +Q                +  RCLIP AI
Sbjct: 166 IPIAKKINFSMAKAVFGFTEQSKIGMIFFPAIQIAPTFF----------ERKRCLIPAAI 215
Query: 62  DQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSXXXXXXX 121
           DQDPY+R+ RD A  +GY+K A + S F P+L   +GKMSAS P +AIY+TDS       
Sbjct: 216 DQDPYWRLQRDFAESLGYYKTAALHSKFVPSLTSLSGKMSASKPETAIYLTDSPEDVEKK 275
Query: 122 XXXYAFSGGQESVELHRKLGANLEVDIPVKYLS-FFLEDDAELEHIKKEYGAGGMLTGEV 180
              +  +GG+ +++  R+ G   E  +  K+L  FF EDD +L+        G +  GE 
Sbjct: 276 VWKFTLTGGRPTLKEQREKGGEPEKCVVFKWLEIFFEEDDKKLKERYYACKNGELTCGEC 335
Query: 181 KQRLAKVLTELVERHQVARAAVTDEMVDAF 210
           K+ L   + E ++ HQ  R    +++V+ F
Sbjct: 336 KRYLISKIQEFLKEHQRRRKKA-EKLVEKF 364

>pdb|3HZR|A Chain A, Tryptophanyl-Trna Synthetase Homolog From Entamoeba Histolytica Length = 386

Iteration: 1
 Score = 88.6 bits (218), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 51/209 (24%), Positives = 100/209 (47%), Gaps = 3/209 (1%)
Query: 4   VAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVXXXXXXXXXXXXGKDHLRCLIPCAIDQ 63
           V K   YN V   F F   D+IGK++ P +                    RCL+  +I  
Sbjct: 177 VEKATAYNVVQPFFNFEYSDNIGKLASPSIMTASMFSQSYSHFFSSP--ARCLVLDSIKN 234
Query: 64  DPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSXXXXXXXXX 123
             +  +   +A  + + +P ++     P L G T     SD NS I ++D+         
Sbjct: 235 VQFHSIIDQIATTLNFIQPTVLFHKMVPLLSGVTKFDIPSDHNS-ILLSDNAKQVERKIN 293
Query: 124 XYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQR 183
             AFSGG+ + E H+KLG   ++D+  + L+ F  D+A+++ ++++Y  G +L+GE+K+ 
Sbjct: 294 KLAFSGGRNTTEEHKKLGGQCDIDVSFQLLNIFSSDNAQVKDVEEKYSKGELLSGELKKI 353
Query: 184 LAKVLTELVERHQVARAAVTDEMVDAFMA 212
           ++  + + +  +   +  +T   + A+++
Sbjct: 354 VSASMKDFIVAYDAKKKPITTAYLKAYIS 382

>pdb|3A04|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase From Hyperthermophilic Archaeon, Aeropyrum Pernix K1 Length = 372

Iteration: 1
 Score = 73.2 bits (178), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 49/147 (33%), Positives = 73/147 (49%), Gaps = 10/147 (6%)
Query: 56  LIPCAIDQDPYFRMTRDVAPRIG----YHKPALIESSFFPALQGETGKMSASDPNSAIYV 111
           ++P   DQDP+ R+TRD+A R+       +PA       P L G   KMS+S P+S I++
Sbjct: 211 VVPVGADQDPHLRLTRDLADRMAGVVELERPASTYHKLQPGLDGR--KMSSSRPDSTIFL 268
Query: 112 TDSXXXXXXXXXXYAFSGGQESVELHRKLGANLEVDIPVKYLSFF--LEDDAELEHIKKE 169
           TD            A +GG+ + E  R+LG   EV   V ++  +  + DD E++HI   
Sbjct: 269 TDPPEVARNKLFR-ALTGGRATAEEQRRLGGVPEV-CSVYHMDLYHLMPDDGEVKHIYTS 326
Query: 170 YGAGGMLTGEVKQRLAKVLTELVERHQ 196
              G +L GE KQ   + L   +  HQ
Sbjct: 327 CRLGKILCGECKQIAWEKLERFLAEHQ 353

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	221
1r6u_A	437	Tryptophanyl-tRNA synthetase; class IC tRNA synthe	4e-92
1r6t_A	477	Tryptophanyl-tRNA synthetase; class IC tRNA synthe	9e-92
2ip1_A	432	Tryptophanyl-tRNA synthetase; rossmann fold, struc	6e-90
3hv0_A	393	Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-bin	2e-89
3jxe_A	392	Tryptophanyl-tRNA synthetase; adenosine triphospha	1e-88
3tze_A	406	Tryptophanyl-tRNA synthetase; structural genomics,	7e-85
3hzr_A	386	Tryptophanyl-tRNA synthetase; APO tRNA-ligase, str	1e-82
3i05_A	395	Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP	7e-82
3foc_A	451	Tryptophanyl-tRNA synthetase; structural genomics,	9e-72
2j5b_A	348	Tyrosyl-tRNA synthetase; ligase, protein biosynthe	4e-52
2dlc_X	394	Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligas	4e-22
3vgj_A	373	Tyrosyl-tRNA synthetase, putative; tyrrs, ligase;	3e-20
3p0j_A	690	Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase	2e-19
3p0j_A	690	Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase	9e-17
2cyc_A	375	Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacy	1e-18
2cya_A	364	Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, st	1e-16
1yi8_B	351	Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.	3e-15
2g36_A	340	Tryptophanyl-tRNA synthetase; TM0492, structural g	6e-14
1n3l_A	372	Tyrosyl-tRNA synthetase; rossmann fold AS catalyti	4e-13
2el7_A	337	Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synth	2e-11
2cyb_A	323	Tyrosyl-tRNA synthetase; rossmann-fold, structural	3e-11
2zp1_A	314	Tyrosyl-tRNA synthetase; tRNA synthetases class I,	8e-10
3tzl_A	322	Tryptophanyl-tRNA synthetase; structural genomics,	4e-08
3n9i_A	346	Tryptophanyl-tRNA synthetase; tryptophan-tRNA liga	8e-07
3sz3_A	341	Tryptophanyl-tRNA synthetase; structural genomics,	1e-06
3prh_A	388	Tryptophanyl-tRNA synthetase; TRPRS, protein biosy	1e-06
1i6k_A	328	TRPRS, tryptophanyl-tRNA synthetase; class I tRNA	1e-06
2yy5_A	348	Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synt	3e-06

>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, AN recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A Length = 437

 Score =  276 bits (706), Expect = 4e-92
 Identities = 134/220 (60%), Positives = 170/220 (77%)

Query: 1   MVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCA 60
           +VK+ K VT+N+V GIFGFT  D IGK+SFP +QA PSF +SFP +F  +  ++CLIPCA
Sbjct: 204 VVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCA 263

Query: 61  IDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKN 120
           IDQDPYFRMTRDVAPRIGY KPAL+ S+FFPALQG   KMSASDPNS+I++TD+AK IK 
Sbjct: 264 IDQDPYFRMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNSSIFLTDTAKQIKT 323

Query: 121 KINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEV 180
           K+NK+AFSGG++++E HR+ G N +VD+   YL+FFLEDD +LE I+K+Y +G MLTGE+
Sbjct: 324 KVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQIRKDYTSGAMLTGEL 383

Query: 181 KQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPLPNMF 220
           K+ L +VL  L+  HQ  R  VTDE+V  FM  R L   F
Sbjct: 384 KKALIEVLQPLIAEHQARRKEVTDEIVKEFMTPRKLSFDF 423

>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A Length = 477

 Score =  276 bits (707), Expect = 9e-92
 Identities = 133/220 (60%), Positives = 169/220 (76%)

Query: 1   MVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCA 60
           +VK+ K VT+N+V GIFGFT  D IGK+SFP +QA PSF +SFP +F  +  ++CLIPCA
Sbjct: 251 VVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCA 310

Query: 61  IDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKN 120
           IDQDPYFRMTRDVAPRIGY KPAL+ S+FFPALQG   KMSASDPNS+I++TD+AK IK 
Sbjct: 311 IDQDPYFRMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNSSIFLTDTAKQIKT 370

Query: 121 KINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEV 180
           K+NK+AFSGG++++E HR+ G N +VD+   YL+FFLEDD +LE I+K+Y +G MLTGE+
Sbjct: 371 KVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQIRKDYTSGAMLTGEL 430

Query: 181 KQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPLPNMF 220
           K+ L +VL  L+  HQ  R  VTDE+V  FM  R L    
Sbjct: 431 KKALIEVLQPLIAEHQARRKEVTDEIVKEFMTPRKLAAAL 470

>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A* Length = 432

 Score =  270 bits (691), Expect = 6e-90
 Identities = 109/216 (50%), Positives = 146/216 (67%)

Query: 1   MVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCA 60
           +V+V++ +T +    +FGF   D IGK  F  +Q   +FPSSFP++    D   CLIPCA
Sbjct: 197 VVRVSRQITGSTAKAVFGFNDSDCIGKFHFASIQIATAFPSSFPNVLGLPDKTPCLIPCA 256

Query: 61  IDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKN 120
           IDQDPYFR+ RDVA ++ Y KPAL+ S FFPALQG T KMSASD  +AI++TD+ K I+ 
Sbjct: 257 IDQDPYFRVCRDVADKLKYSKPALLHSRFFPALQGSTTKMSASDDTTAIFMTDTPKQIQK 316

Query: 121 KINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEV 180
           KINKYAFSGGQ S +LHR+LG N +VD+  +YLSFF +DD  L+    +Y +G +L+GE+
Sbjct: 317 KINKYAFSGGQVSADLHRELGGNPDVDVAYQYLSFFKDDDVFLKECYDKYKSGELLSGEM 376

Query: 181 KQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 216
           K+   + L E V+  Q  RA V +E +D FM    L
Sbjct: 377 KKLCIETLQEFVKAFQERRAQVDEETLDKFMVPHKL 412

>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} Length = 393

 Score =  267 bits (684), Expect = 2e-89
 Identities = 108/214 (50%), Positives = 152/214 (71%)

Query: 1   MVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCA 60
           ++++ K ++ +++  IFGF    ++GK +FP VQA P+F SSFPH+F G+  + CL+P A
Sbjct: 168 ILRIEKKISCSQIKSIFGFKDSCNVGKFAFPAVQAAPAFSSSFPHIFGGRTDIHCLVPHA 227

Query: 61  IDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKN 120
           IDQDPYFRM RDVAPR+GY KP+ I S F P+LQG   KMSAS  NS+I+V D+ ++I+N
Sbjct: 228 IDQDPYFRMVRDVAPRLGYLKPSSIHSIFLPSLQGSQTKMSASVQNSSIFVNDNEESIRN 287

Query: 121 KINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEV 180
           KI KYAFSGGQ + E  R+LGANL+VD+  +YL F +EDD +LE I K+Y +G ML+GE+
Sbjct: 288 KIMKYAFSGGQATEEEQRRLGANLDVDVSWQYLRFLMEDDEKLEEIGKKYSSGEMLSGEI 347

Query: 181 KQRLAKVLTELVERHQVARAAVTDEMVDAFMAVR 214
           K  L + L +L + HQ  R A+ D+++  F    
Sbjct: 348 KSILVQELVKLTKNHQKNREAINDDVIAKFTNKS 381

>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii} Length = 392

 Score =  265 bits (679), Expect = 1e-88
 Identities = 76/217 (35%), Positives = 119/217 (54%), Gaps = 12/217 (5%)

Query: 1   MVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCA 60
            + +AK + ++    +FGFT +  IG + FP +Q  P+F               CLIP A
Sbjct: 165 AIPIAKKINFSMAKAVFGFTEQSKIGMIFFPAIQIAPTFFERKR----------CLIPAA 214

Query: 61  IDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKN 120
           IDQDPY+R+ RD A  +GY+K A + S F P+L   +GKMSAS P +AIY+TDS + ++ 
Sbjct: 215 IDQDPYWRLQRDFAESLGYYKTAALHSKFVPSLTSLSGKMSASKPETAIYLTDSPEDVEK 274

Query: 121 KINKYAFSGGQESVELHRKLGANLEVDIPVKYLS-FFLEDDAELEHIKKEYGAGGMLTGE 179
           K+ K+  +GG+ +++  R+ G   E  +  K+L  FF EDD +L+        G +  GE
Sbjct: 275 KVWKFTLTGGRPTLKEQREKGGEPEKCVVFKWLEIFFEEDDKKLKERYYACKNGELTCGE 334

Query: 180 VKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 216
            K+ L   + E ++ HQ  R    +++V+ F     L
Sbjct: 335 CKRYLISKIQEFLKEHQ-RRRKKAEKLVEKFKYTGKL 370

>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, amino acylation; HET: TRP; 2.60A {Encephalitozoon cuniculi} Length = 406

 Score =  256 bits (655), Expect = 7e-85
 Identities = 89/216 (41%), Positives = 138/216 (63%), Gaps = 3/216 (1%)

Query: 1   MVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCA 60
           ++K++K +  N+ + +FGF    +IG+V FP  +  P F SSF  +  G     CL+P A
Sbjct: 194 ILKISKTINLNEAIKVFGFDMSSNIGQVGFPAKEIAPCFSSSFRFIGKGA---MCLVPAA 250

Query: 61  IDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKN 120
           +DQDP+FR+ RD A  +G  KP+ I  S  P L+G   KMSASDPNS+IY+ D+   I+ 
Sbjct: 251 VDQDPFFRLARDKAKALGEKKPSSIYVSLLPDLKGVNRKMSASDPNSSIYLDDAQDTIRK 310

Query: 121 KINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEV 180
           KI  YA+SGG++++E HR+ G +++VD+P +YL +FL+DD ELE  +  Y  G + + E+
Sbjct: 311 KIIAYAYSGGRKTLEEHREKGGDIDVDVPFEYLKYFLDDDQELEKYRSGYIKGEITSKEM 370

Query: 181 KQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 216
           K++   V+ E V R+Q +R  VTD+ + AF+ +   
Sbjct: 371 KEKCVVVIQEFVSRYQESRKRVTDDDLRAFIDINKF 406

>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica} Length = 386

 Score =  250 bits (639), Expect = 1e-82
 Identities = 58/216 (26%), Positives = 114/216 (52%), Gaps = 3/216 (1%)

Query: 1   MVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCA 60
           +  V K   YN V   F F   D+IGK++ P +     F  S+ H FS     RCL+  +
Sbjct: 174 ISLVEKATAYNVVQPFFNFEYSDNIGKLASPSIMTASMFSQSYSHFFSSP--ARCLVLDS 231

Query: 61  IDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKN 120
           I    +  +   +A  + + +P ++     P L G   K      +++I ++D+AK ++ 
Sbjct: 232 IKNVQFHSIIDQIATTLNFIQPTVLFHKMVPLLSGV-TKFDIPSDHNSILLSDNAKQVER 290

Query: 121 KINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEV 180
           KINK AFSGG+ + E H+KLG   ++D+  + L+ F  D+A+++ ++++Y  G +L+GE+
Sbjct: 291 KINKLAFSGGRNTTEEHKKLGGQCDIDVSFQLLNIFSSDNAQVKDVEEKYSKGELLSGEL 350

Query: 181 KQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 216
           K+ ++  + + +  +   +  +T   + A+++    
Sbjct: 351 KKIVSASMKDFIVAYDAKKKPITTAYLKAYISKTKF 386

>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, LIG nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} Length = 395

 Score =  248 bits (634), Expect = 7e-82
 Identities = 112/217 (51%), Positives = 152/217 (70%), Gaps = 2/217 (0%)

Query: 1   MVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFS-GKDHLRCLIPC 59
           + K+ +  T ++V G FGF  ED+ G+  FP +QA PSF ++FPH+F     ++ CLIP 
Sbjct: 171 VAKIERAFTASQVRGCFGFAMEDNCGRWMFPAIQAAPSFSAAFPHIFPPSMGNVFCLIPQ 230

Query: 60  AIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIK 119
           AIDQDPYFR+TRD+APR+GY KPA+I S FFP L G  GKMS+S    A+ +TD+ K +K
Sbjct: 231 AIDQDPYFRLTRDIAPRLGYLKPAVIHSKFFPGLSGPKGKMSSSSGT-AVLLTDTEKMVK 289

Query: 120 NKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGE 179
           +KINK+AFSGG  + + H  LGAN+EVD+P+++LSFFLEDD EL  +KKEY  G ++TGE
Sbjct: 290 DKINKHAFSGGGATKQEHFLLGANVEVDVPIQWLSFFLEDDEELARVKKEYMLGRIMTGE 349

Query: 180 VKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 216
           VK+ L   +T + + HQ  R  VTDE V  F + R +
Sbjct: 350 VKKLLINTITAITKTHQEKRKLVTDEDVQLFTSTRIM 386

>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803} Length = 451

 Score =  224 bits (571), Expect = 9e-72
 Identities = 97/264 (36%), Positives = 138/264 (52%), Gaps = 48/264 (18%)

Query: 1   MVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDH-------- 52
              V + +  +++   FGF+ + ++G  +FPP Q +P + + F  L   +          
Sbjct: 187 SCLVDRMLPISQLRASFGFSNDANVGYAAFPPKQMLPVYSTYFDGLPFTRVPLPVGTGNE 246

Query: 53  ----------------------------------------LRCLIPCAIDQDPYFRMTRD 72
                                                     CLI   I+QDPYFR+ RD
Sbjct: 247 DAADAVSTKKASKKTPKKDAVLSPVHVVEELFPDSKRYQKAMCLIASGIEQDPYFRLARD 306

Query: 73  VAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQE 132
           +APR+G+ K A +   F P LQG   KMSASDPNSAIY+TD+   IKNKIN+YAFSGG++
Sbjct: 307 LAPRMGHPKNAYLLGKFLPGLQGSGTKMSASDPNSAIYLTDTPAQIKNKINRYAFSGGRD 366

Query: 133 SVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELV 192
           + E HR  GA+L VD+ V+YL  F++DDAELE +K +Y  G +LTGEVK  L  +L  L+
Sbjct: 367 TEEEHRAFGADLSVDVSVRYLEVFMKDDAELEKLKADYKTGKLLTGEVKATLIGILQGLI 426

Query: 193 ERHQVARAAVTDEMVDAFMAVRPL 216
           + H   R  V   M+++F   + L
Sbjct: 427 KEHAERRDKVDTTMIESFTVKKEL 450

>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus} Length = 348

 Score =  170 bits (433), Expect = 4e-52
 Identities = 39/220 (17%), Positives = 81/220 (36%), Gaps = 21/220 (9%)

Query: 1   MVKVAKCVTYNKV---VGIFGFTGEDHI--GKVSFPPVQAVPSFPSSFPHLFSGKDHLRC 55
           M+ +A+  T ++V     I G    D +   ++ +P +QA   F                
Sbjct: 137 MLDIAEFSTISRVKRCCQIMGRNESDCLKASQIFYPCMQAADVFELVPEG--------ID 188

Query: 56  LIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSA 115
           +    IDQ     +  + A   G   P  +      +L G   KMS SDP  AI++ D+ 
Sbjct: 189 ICQLGIDQRKVNMLAIEYANDRGLKIPISLSHHMLMSLSGPKKKMSKSDPQGAIFMDDTE 248

Query: 116 KAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGM 175
           + +  KI++   +      +          +      L+   +   ++E I++++    M
Sbjct: 249 QEVSEKISRAYCTDETF--DNPIFEYIKYLLLRWFGTLNLCGKIYTDIESIQEDF--SSM 304

Query: 176 LTGEVKQRLAKVLTELV----ERHQVARAAVTDEMVDAFM 211
              E+K  +A  +  ++    E  +    +     V ++ 
Sbjct: 305 NKRELKTDVANYINTIIDLVREHFKKPELSELLSNVKSYQ 344

>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae} Length = 394

 Score = 92.2 bits (229), Expect = 4e-22
 Identities = 49/239 (20%), Positives = 85/239 (35%), Gaps = 37/239 (15%)

Query: 1   MVKVAKCVTYNKVVGIF----GFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCL 56
           + +++  V+ N                 +  + +P +QA+                L   
Sbjct: 137 IFRLSNIVSQNDAKRAGADVVKQVANPLLSGLIYPLMQALDEQ------------FLDVD 184

Query: 57  IPCA-IDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSA 115
                +DQ   F +  +  P +GY K A + +   P L    GKMSASDPNS I + +  
Sbjct: 185 CQFGGVDQRKIFVLAEENLPSLGYKKRAHLMNPMVPGLAQG-GKMSASDPNSKIDLLEEP 243

Query: 116 KAIKNKINKYAFSGGQ-------ESVELHRKLGANLEVDIPVKYLSFFLEDD-------- 160
           K +K KIN    S G          V+    +    E+     +  FF++          
Sbjct: 244 KQVKKKINSAFCSPGNVEENGLLSFVQYV--IAPIQELKFGTNHFEFFIDRPEKFGGPIT 301

Query: 161 -AELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPLPN 218
               E +K  +    +   ++K  +A  + EL+E  +   A    E  +A     P+  
Sbjct: 302 YKSFEEMKLAFKEEKLSPPDLKIGVADAINELLEPIRQEFAN-NKEFQEASEKGYPVAT 359

>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A {Plasmodium falciparum} Length = 373

 Score = 86.4 bits (214), Expect = 3e-20
 Identities = 38/180 (21%), Positives = 69/180 (38%), Gaps = 20/180 (11%)

Query: 22  EDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRC-LIPCAIDQDPYFRMTRDVAPRIGYH 80
           E++  ++ +P +Q    F             L   +    IDQ     + R+        
Sbjct: 180 ENYCSQILYPCMQCADIF------------FLNVDICQLGIDQRKVNMLAREYCDIKKIK 227

Query: 81  KPALIES-SFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINK-YAFSGGQE-----S 133
           K  +I S    P L     KMS SD NSAI++ DS   +  KI K Y      E     +
Sbjct: 228 KKPVILSHGMLPGLLEGQEKMSKSDENSAIFMDDSESDVNRKIKKAYCPPNVIENNPIYA 287

Query: 134 VELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVE 193
                   +  E ++  K  +   +    L+ ++ +Y  G +   ++K  +A  + +L++
Sbjct: 288 YAKSIIFPSYNEFNLVRKEKNGGDKTYYTLQELEHDYVNGFIHPLDLKDNVAMYINKLLQ 347

>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A* Length = 690

 Score = 84.9 bits (210), Expect = 2e-19
 Identities = 28/150 (18%), Positives = 55/150 (36%), Gaps = 18/150 (12%)

Query: 61  IDQDPYFRMTRDVAPRIGY-HKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIK 119
           +DQ     + R+    IG   KP ++       L+    KMS SDP+SAI++ D+ + + 
Sbjct: 191 LDQRKVNMLAREYCDLIGRKLKPVILSHHMLAGLKQGQAKMSKSDPDSAIFMEDTEEDVA 250

Query: 120 NKINKYAF-------SGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAEL--------- 163
            KI + A+       +                 V    + + +     A           
Sbjct: 251 RKIRQ-AYCPRVKQSASAITDDGAPVATDDRNPVLDYFQCVVYARPGAAATIDGTTYATY 309

Query: 164 EHIKKEYGAGGMLTGEVKQRLAKVLTELVE 193
           E +++ + +  +    +K  L   +  L+E
Sbjct: 310 EDLEQAFVSDEVSEDALKSCLIDEVNALLE 339

>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A* Length = 690

 Score = 77.6 bits (191), Expect = 9e-17
 Identities = 20/145 (13%), Positives = 44/145 (30%), Gaps = 12/145 (8%)

Query: 56  LIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSA 115
            +             R+                  PAL       +    +  +Y+ D+ 
Sbjct: 523 HVISTSLDGHINAFAREYTKERI--DCVQTLEGRIPALHRPGAAPAVLGADDVLYLDDND 580

Query: 116 KAIKNKINKYAFSGGQES----VELHRKL---GANLEVDIPVKYLSFFLEDDAELEHIKK 168
             I+ KI K A+S   E     + + + L      L ++                E +  
Sbjct: 581 MDIRRKIKK-AYSAPNEEANPVISVAQHLLAQHGALSIERGEANGGNV--SYNTPEALVA 637

Query: 169 EYGAGGMLTGEVKQRLAKVLTELVE 193
           + G+G +   ++K  + ++L +   
Sbjct: 638 DCGSGALHPADLKAAVLQLLLDRSA 662

>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics; HET: TYR; 2.20A {Pyrococcus horikoshii} Length = 375

 Score = 82.2 bits (203), Expect = 1e-18
 Identities = 38/173 (21%), Positives = 66/173 (38%), Gaps = 38/173 (21%)

Query: 56  LIPCAIDQDPYFRMTRDVAPRIGYH---------KPALIESSFFPALQGE---------- 96
           +    +DQ     +  +VA ++ YH         KP  +       LQ            
Sbjct: 183 IAHAGMDQRKAHVIAIEVAQKLRYHPIVHEGEKLKPVAVHHHLLLGLQEPPKWPIESEEE 242

Query: 97  ------TGKMSASDPNSAIYVTDSAKAIKNKINKYAF--------SGGQESVE--LHRKL 140
                   KMS S P SA+++ DS + I+ K+ K AF        +   + VE  + R+ 
Sbjct: 243 FKEIKAQMKMSKSKPYSAVFIHDSPEEIRQKLRK-AFCPAREVRYNPVLDWVEYIIFREE 301

Query: 141 GANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVE 193
                V  P K+           E +K+++  G +   ++K  +A+ L  L+E
Sbjct: 302 PTEFTVHRPAKFGG--DVTYTTFEELKRDFAEGKLHPLDLKNAVAEYLINLLE 352

>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national on protein structural and functional analyses; 2.20A {Aeropyrum pernix} Length = 364

 Score = 76.3 bits (188), Expect = 1e-16
 Identities = 43/157 (27%), Positives = 65/157 (41%), Gaps = 26/157 (16%)

Query: 61  IDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQG---------------ETGKMSASDP 105
           +DQ     + RDVA ++G  KP  I +    +LQG                  KMS S P
Sbjct: 185 MDQRKAHMLARDVAEKLGRKKPVAIHTPIISSLQGPGRMEASQGEIDDVLAEVKMSKSKP 244

Query: 106 NSAIYVTDSAKAIKNKINKYAFSGGQ-------ESVELH--RKLGANLEVDIPVKYLSFF 156
            +A++V DS   I+ KI K      Q       E        + G  L VD P KY    
Sbjct: 245 ETAVFVVDSDDDIRRKIRKAYCPAKQVQGNPVLEIARYILFARDGFTLRVDRPAKYGGP- 303

Query: 157 LEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVE 193
             +    E ++++Y  G +   ++K  +A+ L E+V 
Sbjct: 304 -VEYTSYEELERDYTDGRLHPLDLKNAVAESLIEVVR 339

>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A* Length = 351

 Score = 72.2 bits (178), Expect = 3e-15
 Identities = 39/141 (27%), Positives = 58/141 (41%), Gaps = 16/141 (11%)

Query: 62  DQDPYFRMTRDVAPRIGYH--------KPALIESSFFPALQGETGKMSASDPNSAIYVTD 113
           DQ P    TR++  R            +  L      P L G   KMS S  N AI + D
Sbjct: 171 DQLPMLEQTREIVRRFNALYAPVLAEPQAQLSRVPRLPGLDG-QAKMSKSLGN-AIALGD 228

Query: 114 SAKAIKNKINK-YAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGA 172
           SA  +  K+   Y   G   + +  R  G  +       +L  F  D A ++ +K +Y A
Sbjct: 229 SADEVARKVMGMYTDPGHLRASDPGRVEGNPV-----FTFLDAFDPDPARVQALKDQYRA 283

Query: 173 GGMLTGEVKQRLAKVLTELVE 193
           GG+   +VK+ L  VL  ++ 
Sbjct: 284 GGLGDVKVKKHLIDVLNGVLA 304

>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga maritima} Length = 340

 Score = 68.7 bits (169), Expect = 6e-14
 Identities = 29/140 (20%), Positives = 50/140 (35%), Gaps = 15/140 (10%)

Query: 62  DQDPYFRMTRDVAPRIGYH--------KPALIESSFFPALQGETGKMSASDPNSAIYVTD 113
           DQ  +  +TR++A R  Y         +  L      P   G   KMS S  N  I +  
Sbjct: 162 DQVYHIELTREIARRFNYLYDEVFPEPEAILSRVPKLPGTDGR--KMSKSYGN-IINLEI 218

Query: 114 SAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAG 173
           S K ++  I +   +   +   + R    N E     KY   F   + E + + +     
Sbjct: 219 SEKELEQTILR-MMT---DPARVRRSDPGNPENCPVWKYHQAFDISEEESKWVWEGCTTA 274

Query: 174 GMLTGEVKQRLAKVLTELVE 193
            +   + K+ L K +   + 
Sbjct: 275 SIGCVDCKKLLLKNMKRKLA 294

>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognit domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A* Length = 372

 Score = 66.3 bits (162), Expect = 4e-13
 Identities = 30/142 (21%), Positives = 55/142 (38%), Gaps = 12/142 (8%)

Query: 61  IDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKN 120
           IDQ   F       P +GY K   + +   P L G   KMS+S+  S I + D  + +K 
Sbjct: 186 IDQRKIFTFAEKYLPALGYSKRVHLMNPMVPGLTG--SKMSSSEEESKIDLLDRKEDVKK 243

Query: 121 KINKYAFSGGQES-------VELH-RKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGA 172
           K+ K     G          ++     L +   +    K+             ++K++ A
Sbjct: 244 KLKKAFCEPGNVENNGVLSFIKHVLFPLKSEFVILRDEKWGGNKTYTA--YVDLEKDFAA 301

Query: 173 GGMLTGEVKQRLAKVLTELVER 194
             +  G++K  +   L +L++ 
Sbjct: 302 EVVHPGDLKNSVEVALNKLLDP 323

>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus} Length = 337

 Score = 61.0 bits (149), Expect = 2e-11
 Identities = 37/141 (26%), Positives = 59/141 (41%), Gaps = 16/141 (11%)

Query: 62  DQDPYFRMTRDVAPRIGYH------KP-ALIESSF--FPALQGETGKMSASDPNSAIYVT 112
           DQ  +  +TR++A R  +       +P AL+       P + G   KMS S  N  I + 
Sbjct: 150 DQVQHIELTREIARRFNHLFGETFPEPQALLNPEAPRVPGIDG-KAKMSKSLGN-TIGLL 207

Query: 113 DSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGA 172
           +  ++I  KI         +   +      + E  I   YLS+F      +E +K+EY  
Sbjct: 208 EPEESIWQKIQH-LPD---DPQRIRLSDPGDPERTILFTYLSYF-APKDLVEALKEEYRK 262

Query: 173 GGMLTGEVKQRLAKVLTELVE 193
            G+ T  VK+ L   L E + 
Sbjct: 263 AGVGTYVVKRILFDHLMEALR 283

>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus} Length = 323

 Score = 60.8 bits (148), Expect = 3e-11
 Identities = 35/143 (24%), Positives = 60/143 (41%), Gaps = 17/143 (11%)

Query: 61  IDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKN 120
           IDQ     + R+  PR+GY  P  + +     L G   KMS+S   + I V D  + ++ 
Sbjct: 178 IDQRKIHMLARENLPRLGYSSPVCLHTPILVGLDG--QKMSSS-KGNYISVRDPPEEVER 234

Query: 121 KINKYAFSGGQ----------ESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEY 170
           KI K     G           +   L R     + V+   K+      + A  E + +++
Sbjct: 235 KIRKAYCPAGVVEENPILDIAKYHILPRF--GKIVVERDAKFGGDV--EYASFEELAEDF 290

Query: 171 GAGGMLTGEVKQRLAKVLTELVE 193
            +G +   ++K  +AK L  L+E
Sbjct: 291 KSGQLHPLDLKIAVAKYLNMLLE 313

>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A 3n2y_A* 2hgz_A* Length = 314

 Score = 56.5 bits (137), Expect = 8e-10
 Identities = 35/138 (25%), Positives = 59/138 (42%), Gaps = 13/138 (9%)

Query: 61  IDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKN 120
           ++Q     + R++ P+    K   I +     L GE GKMS+S  N  I V DS + I+ 
Sbjct: 171 MEQRKIHMLARELLPK----KVVCIHNPVLTGLDGE-GKMSSSKGN-FIAVDDSPEEIRA 224

Query: 121 KINK-YAFSGGQES--VELHRK--LGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGM 175
           KI K Y  +G  E   +    K  L   L +  P K+           E ++  +    +
Sbjct: 225 KIKKAYCPAGVVEGNPIMEIAKYFLEYPLTIKRPEKFGGD--LTVNSYEELESLFKNKEL 282

Query: 176 LTGEVKQRLAKVLTELVE 193
               +K  +A+ L +++E
Sbjct: 283 HPMYLKNAVAEELIKILE 300

>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} PDB: 3m5w_A* Length = 322

 Score = 51.4 bits (124), Expect = 4e-08
 Identities = 30/141 (21%), Positives = 53/141 (37%), Gaps = 19/141 (13%)

Query: 62  DQDPYFRMTRDVAPRIGYH------KP-ALI--ESSFFPALQGETGKMSASDPNSAIYVT 112
           DQ  +  + RD+A ++          P A +  E +      G   KMS S  N  I + 
Sbjct: 148 DQIQHVEIARDIALKVNNEWGEIFTLPEARVNEEVAVVVGTDGA--KMSKSYQN-TIDIF 204

Query: 113 DSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGA 172
            S K +K +I+    +      +       N+      K    FL D++  + ++  Y  
Sbjct: 205 SSEKTLKKQISS-IVTDSTALEDPKDHENCNI-----FKIAKLFL-DESGQKELQIRYEK 257

Query: 173 GGMLTGEVKQRLAKVLTELVE 193
           GG   G  K  L +++    +
Sbjct: 258 GGEGYGHFKIYLNELVNAYFK 278

>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid, structural genomics, niaid, center for structural genomics infectious diseases; 1.95A {Yersinia pestis} Length = 346

 Score = 47.6 bits (114), Expect = 8e-07
 Identities = 25/107 (23%), Positives = 48/107 (44%), Gaps = 15/107 (14%)

Query: 93  LQGETGKMSASDPN--SAIYVTDSAKAIKNKINKY---AFSGGQESVELHRKLGA-NLEV 146
           LQ  T KMS SD N  + I + +  K++  KI +    +        ++ +K G  NL +
Sbjct: 201 LQDPTKKMSKSDDNRNNVIELLEDPKSVVKKIKRAMTDSDEPALIRYDVEKKAGVSNL-L 259

Query: 147 DIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVE 193
           DI    LS        +  ++ ++   G + G +K  +A  ++ ++ 
Sbjct: 260 DI----LSGV--TGQSIPELEAQF--TGQMYGHLKGAVADAVSGMLS 298

>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, rossmann fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor} Length = 341

 Score = 47.6 bits (114), Expect = 1e-06
 Identities = 38/158 (24%), Positives = 65/158 (41%), Gaps = 30/158 (18%)

Query: 56  LIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFP--------------ALQGETGKMS 101
            +P   DQ  +  + RD+A R  ++     E   F               +LQ  T KMS
Sbjct: 146 QVPVGSDQKQHLELARDIATR--FNNIYSPEQPIFTIPEPYIPTVNARVMSLQDATKKMS 203

Query: 102 ASDPN--SAIYVTDSAKAIKNKINKY---AFSGGQESVELHRKLGA-NLEVDIPVKYLSF 155
            SD N  + I + +  K+I  KINK    A +  + + ++  K G  NL + +     S 
Sbjct: 204 KSDDNRKNVITLLEDPKSIIKKINKAQTDAETPPRIAYDVENKAGIANL-MGL----YSA 258

Query: 156 FLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVE 193
                     I+ +Y AG  + G  K+ + + +  ++E
Sbjct: 259 A--TGKTFAEIEAQY-AGVEMYGPFKKDVGEAVVAMLE 293

>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis, translation, class I tRNA synth rossman fold, high motif, KMSKS motif; 2.80A {Bacillus subtilis} Length = 388

 Score = 47.3 bits (113), Expect = 1e-06
 Identities = 31/106 (29%), Positives = 46/106 (43%), Gaps = 15/106 (14%)

Query: 93  LQGETGKMSASDPN--SAIYVTDSAKAIKNKINKYAF--SGGQESVELHRKLGA-NLEVD 147
           L     KMS SDPN  + I + D  K ++ KI   A   S G    +   K G  NL + 
Sbjct: 220 LNDPLKKMSKSDPNQKAYITLLDEPKQLEKKIKS-AVTDSEGIVKFDKENKPGVSNL-LT 277

Query: 148 IPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVE 193
           I     S     +  +E ++ +Y   G   GE K  LA+V+   ++
Sbjct: 278 I----YSIL--GNTTIEELEAKY--EGKGYGEFKGDLAEVVVNALK 315

>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A Length = 328

 Score = 47.1 bits (113), Expect = 1e-06
 Identities = 34/106 (32%), Positives = 48/106 (45%), Gaps = 15/106 (14%)

Query: 93  LQGETGKMSASDPN--SAIYVTDSAKAIKNKINKYAF--SGGQESVELHRKLGA-NLEVD 147
           L   T KMS SDPN  + I + D AK I+ KI   A   S G    +   K G  NL ++
Sbjct: 186 LVDPTKKMSKSDPNPKAYITLLDDAKTIEKKIKS-AVTDSEGTIRYDKEAKPGISNL-LN 243

Query: 148 IPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVE 193
           I     S        +E ++++Y   G   G  K  LA+V+ E + 
Sbjct: 244 I----YSTL--SGQSIEELERQY--EGKGYGVFKADLAQVVIETLR 281

>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae} Length = 348

 Score = 46.1 bits (110), Expect = 3e-06
 Identities = 21/113 (18%), Positives = 37/113 (32%), Gaps = 20/113 (17%)

Query: 93  LQGETGKMSASDPN--SAIYVTDSAKAIKNKINKYAF--SGGQESVELHRKLGA-NLEVD 147
           L   T KMS S  N    IY+ D  + +  KI + A   S  +       + G  N+ + 
Sbjct: 196 LFDPTKKMSKSSKNQNGVIYLDDPKEVVVKKIRQ-ATTDSFNKIRFASKTQPGVTNM-LT 253

Query: 148 IPVKYLSFF-------LEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVE 193
           I    L             +     ++  +        ++K  L +    L+ 
Sbjct: 254 I----LKALLKEPVNQSLTNQLGNDLEAYF--STKSYLDLKNALTEATVNLLV 300

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	221
3tze_A	406	Tryptophanyl-tRNA synthetase; structural genomics,	100.0
3hzr_A	386	Tryptophanyl-tRNA synthetase; APO tRNA-ligase, str	100.0
3hv0_A	393	Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-bin	100.0
3i05_A	395	Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP	100.0
3foc_A	451	Tryptophanyl-tRNA synthetase; structural genomics,	100.0
3jxe_A	392	Tryptophanyl-tRNA synthetase; adenosine triphospha	100.0
1r6u_A	437	Tryptophanyl-tRNA synthetase; class IC tRNA synthe	100.0
3sz3_A	341	Tryptophanyl-tRNA synthetase; structural genomics,	100.0
1r6t_A	477	Tryptophanyl-tRNA synthetase; class IC tRNA synthe	100.0
2ip1_A	432	Tryptophanyl-tRNA synthetase; rossmann fold, struc	100.0
3n9i_A	346	Tryptophanyl-tRNA synthetase; tryptophan-tRNA liga	100.0
3prh_A	388	Tryptophanyl-tRNA synthetase; TRPRS, protein biosy	100.0
3tzl_A	322	Tryptophanyl-tRNA synthetase; structural genomics,	100.0
1i6k_A	328	TRPRS, tryptophanyl-tRNA synthetase; class I tRNA	100.0
2yy5_A	348	Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synt	100.0
2g36_A	340	Tryptophanyl-tRNA synthetase; TM0492, structural g	100.0
1yi8_B	351	Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.	100.0
3a04_A	372	Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tR	100.0
2el7_A	337	Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synth	100.0
3vgj_A	373	Tyrosyl-tRNA synthetase, putative; tyrrs, ligase;	100.0
3p0j_A	690	Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase	100.0
2cyc_A	375	Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacy	100.0
2cya_A	364	Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, st	100.0
2j5b_A	348	Tyrosyl-tRNA synthetase; ligase, protein biosynthe	100.0
2cyb_A	323	Tyrosyl-tRNA synthetase; rossmann-fold, structural	100.0
1n3l_A	372	Tyrosyl-tRNA synthetase; rossmann fold AS catalyti	100.0
2zp1_A	314	Tyrosyl-tRNA synthetase; tRNA synthetases class I,	100.0
2dlc_X	394	Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligas	100.0
1h3f_A	432	Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA sy	100.0
3p0j_A	690	Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase	100.0
2yxn_A	322	Tyrosyl-tRNA synthetase; tRNA synthetases class I,	100.0
2pid_A	356	Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase	100.0
2jan_A	432	Tyrosyl-tRNA synthetase; protein biosynthesis, ami	100.0
1y42_X	392	Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tR	100.0
1jil_A	420	Tyrrs, tyrosyl-tRNA synthetase; truncation, based	100.0
2ts1_A	419	Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30	100.0
2cfo_A	492	Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA s	96.98
1nzj_A	298	Hypothetical protein YADB; Zn cluster, glutamyl T-	96.79
1j09_A	468	Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, r	96.52
3al0_C	592	Glutamyl-tRNA(Gln) amidotransferase subunit C, GL	96.46
3afh_A	488	Glutamyl-tRNA synthetase 2; protein-substrate comp	96.19
2ja2_A	498	Glutamyl-tRNA synthetase; non-discriminating gluta	96.03
2csx_A	497	Methionyl-tRNA synthetase; ligase, riken structura	95.55
2d5b_A	500	Methionyl-tRNA synthetase; rossmann fold, class 1A	95.34
2o5r_A	481	Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, g	95.03
3fnr_A	464	Arginyl-tRNA synthetase; transferase, PSI-2, NYSGX	94.26
2x1l_A	524	Methionyl-tRNA synthetase; nucleotide-binding, pro	93.11
3u1f_A	542	Methionyl-tRNA synthetase; aminoacyl-tRNA syntheta	92.92
1ffy_A	917	Isoleucyl-tRNA synthetase; protein-RNA complex, me	92.88
3kfl_A	564	Methionyl-tRNA synthetase; parasite, aminoacyl-tRN	92.43
1irx_A	523	Lysyl-tRNA synthetase; beta sandwitch, zinc-bindin	92.06
1li5_A	461	Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys	91.77
4dlp_A	536	Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA	91.7
3c8z_A	414	Cysteinyl-tRNA synthetase; cysteine ligase, rossma	91.59
1gax_A	862	Valrs, valyl-tRNA synthetase; protein-RNA complex,	91.47
4g6z_A	490	Glutamate-tRNA ligase; aminoacyl-tRNA synthetase,	91.13
3h99_A	560	Methionyl-tRNA synthetase; rossmann fold, aminoacy	90.81
1ile_A	821	Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA s	90.08
3aii_A	553	Glutamyl-tRNA synthetase; amino-acyl tRNA syntheta	90.0
1wz2_A	967	Leucyl-tRNA synthetase; ligase, riken structural g	89.98
1wkb_A	810	Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, e	89.35
4gri_A	512	Glutamate--tRNA ligase; structural genomics, seatt	87.8
1iq0_A	592	Arginyl-tRNA synthetase; riken structural genomics	85.04
3tqo_A	462	Cysteinyl-tRNA synthetase; protein synthesis, liga	84.1
4arc_A	880	Leucine--tRNA ligase; ligase-RNA complex, nucleoti	83.66
2zue_A	629	Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase	82.21
1f7u_A	607	Arginyl-tRNA synthetase; RNA-protein complex, amin	80.23

>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, amino acylation; HET: TRP; 2.60A {Encephalitozoon cuniculi}

Probab=100.00  E-value=1.1e-58  Score=423.45  Aligned_cols=212  Identities=42%  Similarity=0.779  Sum_probs=195.9

Q ss_pred             CccccccccHHHHHHhhCCCCCCcccccchhhhhccCCCCCCCCcccccCCCCcccccCCCCchHHHHHHHHHHHHhCCC
Q 027582            1 MVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYH   80 (221)
Q Consensus         1 ~~~l~r~~t~k~~~~~~g~~~~~~~g~l~YP~lqaa~~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~~laR~ia~~~n~~   80 (221)
                      +++|+|++|++++++++|+.++.++|+|+||+|||||+|+++||.|+.+++   |+||||+||+||+++||++|+|||++
T Consensus       194 ~~~L~r~~t~~~~~~~~g~~~~~s~g~f~YPlLQaaD~~~~~~p~il~~~a---~lvpvG~DQ~~~i~l~Rdla~r~~~~  270 (406)
T 3tze_A          194 ILKISKTINLNEAIKVFGFDMSSNIGQVGFPAKEIAPCFSSSFRFIGKGAM---CLVPAAVDQDPFFRLARDKAKALGEK  270 (406)
T ss_dssp             HHHHHHTCBHHHHHHHHCCCTTSBHHHHHHHHHHHGGGSGGGSTTSCTTCE---EEEEEEGGGHHHHHHHHHHHHHHTCC
T ss_pred             HHHHHhhCCHHHHHHhhCCCCCCcchhhhhHHHhhhhhhccchHHhccCCC---eEEeeccchHHHHHHHHHHHHHcCCC
Confidence            358999999999999999888899999999999999999999999998877   78999999999999999999999999


Q ss_pred             CccccccCcccCCCCCCCCcCCCCCCCceecCCCHHHHHHHHhhccccCCcchhhhhhhcCCCccchhHHHHHhhhcCCh
Q 027582           81 KPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDD  160 (221)
Q Consensus        81 ~p~~l~~~~lp~L~g~~~KMSkS~~~s~I~L~D~p~~I~~KI~k~A~td~~~~~~~~~~~~~~p~v~~~~~~l~~~~~~~  160 (221)
                      +|.++++++||||+|+++|||||+++|+|+|+|+|++|++||++||+||++.+++.+++.++||+++|++.||++|++++
T Consensus       271 ~p~~l~~~~l~gLdG~~~KMSKS~~~~~I~L~D~p~~I~kKI~k~A~td~~~~~e~~~~~~g~p~v~~l~~~~~~~~~~~  350 (406)
T 3tze_A          271 KPSSIYVSLLPDLKGVNRKMSASDPNSSIYLDDAQDTIRKKIIAYAYSGGRKTLEEHREKGGDIDVDVPFEYLKYFLDDD  350 (406)
T ss_dssp             CCEEEEECCCCCTTSCCCCSSCSCGGGSCBTTCCHHHHHHHHHHHCCCCCCCC-------CCCGGGCHHHHHHHHHCCCH
T ss_pred             CceeeccCcccCCCCCCcCCCCCCCCCcccCCCCHHHHHHHHHhhccCCCcccccccccCCCCCcccHHHHHHHHHcCCc
Confidence            99999999999999976799999988899999999999999999999999988888888999999999999999998668


Q ss_pred             HhHHHHHHHHhcCCCChHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhcCC
Q 027582          161 AELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRP  215 (221)
Q Consensus       161 ~~~eel~~~y~~g~~~~~~lK~~lae~l~~~l~pire~~~~~~~~~l~~il~~~~  215 (221)
                      +++++|+++|++|+++|++||+.||++|+++|+|||+||+++++|.|++++..|+
T Consensus       351 ~~~eei~~~y~~G~l~~g~lK~~Lae~i~~~l~pirer~~~~~~d~~~~~~~~~~  405 (406)
T 3tze_A          351 QELEKYRSGYIKGEITSKEMKEKCVVVIQEFVSRYQESRKRVTDDDLRAFIDINK  405 (406)
T ss_dssp             HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCGGG
T ss_pred             chHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhcCcCC
Confidence            8999999999999999999999999999999999999999999999999999875

>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica}

Probab=100.00  E-value=2.7e-58  Score=418.61  Aligned_cols=211  Identities=27%  Similarity=0.568  Sum_probs=200.3

Q ss_pred             CccccccccHHHHHHhhCCCCCCcccccchhhhhccCCCCCCCCcccccC-CCCcccccCCCCchHHHHHHHHHHHHhCC
Q 027582            1 MVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGK-DHLRCLIPCAIDQDPYFRMTRDVAPRIGY   79 (221)
Q Consensus         1 ~~~l~r~~t~k~~~~~~g~~~~~~~g~l~YP~lqaa~~~~~~~~Dil~~~-ad~~~~vpvG~DQ~~h~~laR~ia~~~n~   79 (221)
                      +++|+|++|++++++++|+.+++++|+|+||+|||||+|..+|||||.++ +   |+||||+||+||+++||++|+|||+
T Consensus       174 ~~~l~r~~t~~~~~~~~~~~~~~~~g~f~YP~LQaaD~~~~~~pdil~~~~a---~~VpvG~DQ~~hl~l~Rdla~r~n~  250 (386)
T 3hzr_A          174 ISLVEKATAYNVVQPFFNFEYSDNIGKLASPSIMTASMFSQSYSHFFSSPAR---CLVLDSIKNVQFHSIIDQIATTLNF  250 (386)
T ss_dssp             HHHHHHHCBHHHHTTTSCCCSSSBHHHHHHHHHHHHTTSGGGCTTTCSSCCE---EEEEEEGGGHHHHHHHHHHHHHHTC
T ss_pred             HHHHHhhccHHHHHHHhCCCCCCchhhHhhHHHHHHHHhhhcchHhhCCCCc---cccccccchHHHHHHHHHHHHHcCC
Confidence            36899999999999999988889999999999999999999999999886 5   8999999999999999999999999


Q ss_pred             CCccccccCcccCCCCCCCCcCCCCCCCceecCCCHHHHHHHHhhccccCCcchhhhhhhcCCCccchhHHHHHhhhcCC
Q 027582           80 HKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLED  159 (221)
Q Consensus        80 ~~p~~l~~~~lp~L~g~~~KMSkS~~~s~I~L~D~p~~I~~KI~k~A~td~~~~~~~~~~~~~~p~v~~~~~~l~~~~~~  159 (221)
                      ++|.++++++||||+|+ +|||||+++|+|+|+|+|++|++||+++||||++.|.+++...+++|+++++++|+.+|+.+
T Consensus       251 ~~p~~l~~~~l~gLdG~-~KMSKSd~~~~I~L~D~p~~i~kKI~k~A~t~g~~Td~~~~~~~g~p~~~~v~~~~~~~~~~  329 (386)
T 3hzr_A          251 IQPTVLFHKMVPLLSGV-TKFDIPSDHNSILLSDNAKQVERKINKLAFSGGRNTTEEHKKLGGQCDIDVSFQLLNIFSSD  329 (386)
T ss_dssp             CCCEEEEECCCCCTTCT-TCCCCCCTTTSCBTTCCHHHHHHHHHHTSCCCCCSSHHHHHTTCCCGGGCHHHHHHHHHCSC
T ss_pred             CCceEeecCeeeCCCCC-CccCcCCCCCeeecCCCHHHHHHHHHHhccCCCCCCcccccccCCCCccchHHHHHHHHcCC
Confidence            99998989999999997 49999998899999999999999999989999999998888999999999999999999866


Q ss_pred             hHhHHHHHHHHhcCCCChHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhcCC
Q 027582          160 DAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRP  215 (221)
Q Consensus       160 ~~~~eel~~~y~~g~~~~~~lK~~lae~l~~~l~pire~~~~~~~~~l~~il~~~~  215 (221)
                      ++++++|+++|++|+++|++||+.||++|+++|+|||+||+++++|.|++++..++
T Consensus       330 ~~~~eei~~~~~~G~l~~g~~K~~lae~i~~~l~pirer~~~~~~~~~~~~~~~~~  385 (386)
T 3hzr_A          330 NAQVKDVEEKYSKGELLSGELKKIVSASMKDFIVAYDAKKKPITTAYLKAYISKTK  385 (386)
T ss_dssp             HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHC
T ss_pred             hhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCC
Confidence            78999999999999999999999999999999999999999999999999998873

>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} SCOP: c.26.1.0

Probab=100.00  E-value=2e-58  Score=420.55  Aligned_cols=218  Identities=50%  Similarity=0.875  Sum_probs=191.8

Q ss_pred             ccccccccHHHHHHhhCCCCCCcccccchhhhhccCCCCCCCCcccccCCCCcccccCCCCchHHHHHHHHHHHHhCCCC
Q 027582            2 VKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHK   81 (221)
Q Consensus         2 ~~l~r~~t~k~~~~~~g~~~~~~~g~l~YP~lqaa~~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~~laR~ia~~~n~~~   81 (221)
                      ++|+|++|++++++++|+.+++++|+|+||+|||||+|..+||.++..++|+.|+||||.||++|+++|||+|+|||+++
T Consensus       169 ~~l~r~~t~~~~~~~~~~~~~~s~g~f~YPlLQaaDil~~~~p~l~~~~~di~~lvp~G~DQ~~~i~l~Rdla~r~~~~~  248 (393)
T 3hv0_A          169 LRIEKKISCSQIKSIFGFKDSCNVGKFAFPAVQAAPAFSSSFPHIFGGRTDIHCLVPHAIDQDPYFRMVRDVAPRLGYLK  248 (393)
T ss_dssp             HHHHHHSBHHHHHHHHCCCTTSBHHHHHHHHHHHGGGSGGGCHHHHTTCSCCCEEEEEEGGGHHHHHHHHHHTGGGTCCC
T ss_pred             HHHHccCCHHHHHHhhCCCCCCchhhHhHHHHHHHHHHhhhhHHHhcccCCCceecccccchHHHHHHHHHHHHHcCCCC
Confidence            58999999999999999988899999999999999888888888888888888999999999999999999999999999


Q ss_pred             ccccccCcccCCCCCCCCcCCCCCCCceecCCCHHHHHHHHhhccccCCcchhhhhhhcCCCccchhHHHHHhhhcCChH
Q 027582           82 PALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDA  161 (221)
Q Consensus        82 p~~l~~~~lp~L~g~~~KMSkS~~~s~I~L~D~p~~I~~KI~k~A~td~~~~~~~~~~~~~~p~v~~~~~~l~~~~~~~~  161 (221)
                      |.++++++||||+|+++|||||++||+|+|+|+|++|++||+++|+||++.+.+++.+.++||+++++++|+++|+.+++
T Consensus       249 p~~l~~~~l~gLdG~~~KMSKS~~nsaI~L~D~p~~i~kKI~k~A~td~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~  328 (393)
T 3hv0_A          249 PSSIHSIFLPSLQGSQTKMSASVQNSSIFVNDNEESIRNKIMKYAFSGGQATEEEQRRLGANLDVDVSWQYLRFLMEDDE  328 (393)
T ss_dssp             CEEEEECCCCC-------------CCCCBTTCCHHHHHHHHHHHSCCCSCSSSCCC---CCCTTTCHHHHHHHHHCCCHH
T ss_pred             ceeeccCcccCCCCCCcCCCCCCCCCeEeccCCHHHHHHHHHhhccCCCCccccccccCCCCcchhHHHHHHHHHcCChh
Confidence            99999999999999877999999989999999999999999998999999888877788999999999999999987788


Q ss_pred             hHHHHHHHHhcCCCChHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhcCCCCCCCC
Q 027582          162 ELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPLPNMFD  221 (221)
Q Consensus       162 ~~eel~~~y~~g~~~~~~lK~~lae~l~~~l~pire~~~~~~~~~l~~il~~~~~~~~~~  221 (221)
                      ++++++++|++|+++|++||+.|+++|+++|+|+|+||+++++|.|++||..++.  +|.
T Consensus       329 ~~eei~~~y~~G~l~~g~~K~~lae~i~~~l~pirer~~~~~~d~~~~~~~~~~~--~~~  386 (393)
T 3hv0_A          329 KLEEIGKKYSSGEMLSGEIKSILVQELVKLTKNHQKNREAINDDVIAKFTNKSRE--QLL  386 (393)
T ss_dssp             HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHCCCCC--CCC
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCcCHH--HHH
Confidence            9999999999999999999999999999999999999999999999999999976  663

>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, LIG nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} SCOP: c.26.1.0

Probab=100.00  E-value=1.3e-58  Score=422.11  Aligned_cols=214  Identities=52%  Similarity=0.886  Sum_probs=163.7

Q ss_pred             ccccccccHHHHHHhhCCCCCCcccccchhhhhccCCCCCCCCcccccC-CCCcccccCCCCchHHHHHHHHHHHHhCCC
Q 027582            2 VKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGK-DHLRCLIPCAIDQDPYFRMTRDVAPRIGYH   80 (221)
Q Consensus         2 ~~l~r~~t~k~~~~~~g~~~~~~~g~l~YP~lqaa~~~~~~~~Dil~~~-ad~~~~vpvG~DQ~~h~~laR~ia~~~n~~   80 (221)
                      ++|+|++|++++++++||.+++++|+|+||+|||||+|.++||||++++ .+..|+||||.||+||+++||++|+|||++
T Consensus       172 ~~l~r~~t~~~~~~~~~~~~~~s~g~f~YPlLQaaD~~~~~~~DIll~~~~~~~~lvp~G~DQ~~~i~l~Rdla~r~~~~  251 (395)
T 3i05_A          172 AKIERAFTASQVRGCFGFAMEDNCGRWMFPAIQAAPSFSAAFPHIFPPSMGNVFCLIPQAIDQDPYFRLTRDIAPRLGYL  251 (395)
T ss_dssp             HHHHHHSBHHHHHHHHCCCTTSBHHHHHHHHHHHGGGSGGGCTTTSCGGGCCCEEEEEEEGGGHHHHHHHHHTHHHHTCC
T ss_pred             HHHHhhCCHHHHHHhhCCCCCCchHHHHHHHHHHHhhhcccchhhhcccccCCceEEEeccchHHHHHHHHHHHHHcCCC
Confidence            5789999999999999998889999999999999999999999999998 223389999999999999999999999999


Q ss_pred             CccccccCcccCCCCCCCCcCCCCCCCceecCCCHHHHHHHHhhccccCCcchhhhhhhcCCCccchhHHHHHhhhcCCh
Q 027582           81 KPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDD  160 (221)
Q Consensus        81 ~p~~l~~~~lp~L~g~~~KMSkS~~~s~I~L~D~p~~I~~KI~k~A~td~~~~~~~~~~~~~~p~v~~~~~~l~~~~~~~  160 (221)
                      +|.++++++||||+|+++||||| ++|+|+|+|+|++|++||+++||||+..++++++++++||++||+++|+++|+.++
T Consensus       252 ~p~~l~~~~l~gLdG~~~KMSKS-~~~~I~L~D~p~~i~kKI~k~A~td~~~~~e~~~~~~g~p~v~~~~~~~~~~~~~~  330 (395)
T 3i05_A          252 KPAVIHSKFFPGLSGPKGKMSSS-SGTAVLLTDTEKMVKDKINKHAFSGGGATKQEHFLLGANVEVDVPIQWLSFFLEDD  330 (395)
T ss_dssp             CCEEEEECCCCCC--------------CCBTTCCHHHHHHHHC----------------------CCHHHHHHHHHCCCS
T ss_pred             CceeeccccccCCCCCcccCCCC-CCCcccCCCCHHHHHHHHHhhccCCCccchhhcccCCCCcchhHHHHHHHHHcCCh
Confidence            99999999999999987899999 77899999999999999999899999988888889999999999999999998678


Q ss_pred             HhHHHHHHHHhcCCCChHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhcCCC
Q 027582          161 AELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL  216 (221)
Q Consensus       161 ~~~eel~~~y~~g~~~~~~lK~~lae~l~~~l~pire~~~~~~~~~l~~il~~~~~  216 (221)
                      +++++++++|++|+++|++||+.|++.|+++|+|||+||+++++|.|++++..+.+
T Consensus       331 ~~~eei~~~y~~G~l~~g~lK~~lae~i~~~l~pirer~~~~~~d~~~~~~~~~~~  386 (395)
T 3i05_A          331 EELARVKKEYMLGRIMTGEVKKLLINTITAITKTHQEKRKLVTDEDVQLFTSTRIM  386 (395)
T ss_dssp             HHHHHHCC-------CHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHSCCCC
T ss_pred             hhHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhChhcc
Confidence            89999999999999999999999999999999999999999999999999998865

>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803}

Probab=100.00  E-value=4.4e-56  Score=409.90  Aligned_cols=215  Identities=45%  Similarity=0.802  Sum_probs=200.2

Q ss_pred             ccccccccHHHHHHhhCCCCCCcccccchhhhhccCCCCCCC----------------------------------Cccc
Q 027582            2 VKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSF----------------------------------PHLF   47 (221)
Q Consensus         2 ~~l~r~~t~k~~~~~~g~~~~~~~g~l~YP~lqaa~~~~~~~----------------------------------~Dil   47 (221)
                      .+|+|++|+++++++.|+.+++++|+|+||+|||||+|..+|                                  .|||
T Consensus       188 ~~L~r~~Tv~~m~~~~~f~~~is~gef~YPlLQAaDil~~~~d~~~~~~vp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  267 (451)
T 3foc_A          188 CLVDRMLPISQLRASFGFSNDANVGYAAFPPKQMLPVYSTYFDGLPFTRVPLPVGTGNEDAADAVSTKKASKKTPKKDAV  267 (451)
T ss_dssp             HHHHHTCCHHHHHHHHCCCSSSCHHHHTCHHHHHGGGSGGGGTTSGGGCCBCC-------------------------CC
T ss_pred             HHHHhhCCHHHHHhhcccCCCCchHHHhhHHHHHHHHHHhhcCCCCccccccccccccchhhhhhhhhhccccccchhhh
Confidence            478999999999999999888999999999999998887666                                  2677


Q ss_pred             ccCCC--------------CcccccCCCCchHHHHHHHHHHHHhCCCCccccccCcccCCCCCCCCcCCCCCCCceecCC
Q 027582           48 SGKDH--------------LRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTD  113 (221)
Q Consensus        48 ~~~ad--------------~~~~vpvG~DQ~~h~~laR~ia~~~n~~~p~~l~~~~lp~L~g~~~KMSkS~~~s~I~L~D  113 (221)
                      +|++|              ++|+||||+||+||+|+||++|+|||+++|.++++++||||+|+++|||||++||+|+|+|
T Consensus       268 l~~a~~~~~~~~~~~~~~~~~~~VPvG~DQ~~hlel~Rdia~rfn~~~p~~~~~~~l~gLdG~~~KMSKS~~ns~I~l~D  347 (451)
T 3foc_A          268 LSPVHVVEELFPDSKRYQKAMCLIASGIEQDPYFRLARDLAPRMGHPKNAYLLGKFLPGLQGSGTKMSASDPNSAIYLTD  347 (451)
T ss_dssp             CCHHHHHHHHCGGGGGBCCCEEEEEECTTTHHHHHHHHHHTTTTTSCCCEEEEECCCCBTTBTTCCCCTTCGGGSCBTTC
T ss_pred             hhhcccchhhcccccccccccceeeeecchHHHHHHHHHHHHHhCCCCCeeecCCcccCCCCCCCccCCCCCCCeeeecC
Confidence            77776              7789999999999999999999999999999999999999999878999999988999999


Q ss_pred             CHHHHHHHHhhccccCCcchhhhhhhcCCCccchhHHHHHhhhcCChHhHHHHHHHHhcCCCChHHHHHHHHHHHHHHhH
Q 027582          114 SAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVE  193 (221)
Q Consensus       114 ~p~~I~~KI~k~A~td~~~~~~~~~~~~~~p~v~~~~~~l~~~~~~~~~~eel~~~y~~g~~~~~~lK~~lae~l~~~l~  193 (221)
                      +|++|++||+++|+||+..+.+++.++++||++|++|+||.+|+.+++++++|+++|++|+++|++||+.|++.|+++|+
T Consensus       348 ~p~~I~kKI~k~A~Td~~~~~~~~~~~~g~p~~~~v~~~l~~f~~~~~~~eel~~~y~~G~l~~g~lK~~Lae~i~~~l~  427 (451)
T 3foc_A          348 TPAQIKNKINRYAFSGGRDTEEEHRAFGADLSVDVSVRYLEVFMKDDAELEKLKADYKTGKLLTGEVKATLIGILQGLIK  427 (451)
T ss_dssp             CHHHHHHHHHHHSCCCSCSSHHHHHTTCCCTTTCHHHHHHHHHCCCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHhhhccCCCCccchhcccCCCCcchhhHHHHHHHHcCCHhHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence            99999999999779999888888889999999999999999997678899999999999999999999999999999999


Q ss_pred             HHHHHHHHHhHHHHHHHHhcCCC
Q 027582          194 RHQVARAAVTDEMVDAFMAVRPL  216 (221)
Q Consensus       194 pire~~~~~~~~~l~~il~~~~~  216 (221)
                      |||+||++++++.|++++..+++
T Consensus       428 pirer~~~l~~d~v~~f~~~~~~  450 (451)
T 3foc_A          428 EHAERRDKVDTTMIESFTVKKEL  450 (451)
T ss_dssp             HHHHHHHTCCHHHHHHHHCCTTC
T ss_pred             HHHHHHHHHHHHHHHHhhCcccC
Confidence            99999999999999999998854

>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii}

Probab=100.00  E-value=3.7e-55  Score=398.76  Aligned_cols=203  Identities=37%  Similarity=0.659  Sum_probs=173.5

Q ss_pred             ccccccccHHHHHHhhCCCCCCcccccchhhhhccCCCCCCCCccccc-CCCCcccccCCCCchHHHHHHHHHHHHhCCC
Q 027582            2 VKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSG-KDHLRCLIPCAIDQDPYFRMTRDVAPRIGYH   80 (221)
Q Consensus         2 ~~l~r~~t~k~~~~~~g~~~~~~~g~l~YP~lqaa~~~~~~~~Dil~~-~ad~~~~vpvG~DQ~~h~~laR~ia~~~n~~   80 (221)
                      ..|++++|++++++.+|++++.++|+|+||+||||        |||.+ ++   |+||||.||+||+++||++|+|||++
T Consensus       166 ~~l~~~~t~~~~~~~~~~~~~~~~g~f~YP~LQaa--------Dil~~~~a---~~vpvG~DQ~~hl~l~Rdla~r~n~~  234 (392)
T 3jxe_A          166 IPIAKKINFSMAKAVFGFTEQSKIGMIFFPAIQIA--------PTFFERKR---CLIPAAIDQDPYWRLQRDFAESLGYY  234 (392)
T ss_dssp             HHHHHHSBHHHHHHHHCCCTTSBHHHHHHHHHHHG--------GGGSSSSC---EEEEEEGGGHHHHHHHHHHTGGGTSC
T ss_pred             HHHHhhCCHHHHhhhhccCCCCchHHHHHHHHHHh--------hHHhhcCC---ceeecccchHHHHHHHHHHHHHcCCC
Confidence            46889999999999999988899999999999999        99999 46   78999999999999999999999999


Q ss_pred             CccccccCcccCCCCCCCCcCCCCCCCceecCCCHHHHHHHHhhccccCCcchhhhhhhcCCCccchhHHHHHhhhc-CC
Q 027582           81 KPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFL-ED  159 (221)
Q Consensus        81 ~p~~l~~~~lp~L~g~~~KMSkS~~~s~I~L~D~p~~I~~KI~k~A~td~~~~~~~~~~~~~~p~v~~~~~~l~~~~-~~  159 (221)
                      +|.++++++||||+|+++|||||++||+|+|+|+|++|++||++||+||+..+.+.+.+.++||++|++++|+.+|+ .+
T Consensus       235 ~p~~l~~~~l~gLdG~~~KMSKS~~ns~I~L~D~p~~I~kKI~k~A~td~~~~~~~~~~~~~~P~~~~~~~~l~~~~~~~  314 (392)
T 3jxe_A          235 KTAALHSKFVPSLTSLSGKMSASKPETAIYLTDSPEDVEKKVWKFTLTGGRPTLKEQREKGGEPEKCVVFKWLEIFFEED  314 (392)
T ss_dssp             CCEEEEECCCCCSSCSSSCCCTTSGGGCCBTTCCHHHHHHHHHTCC--------------------CHHHHHHHHTTCCC
T ss_pred             CCeeeecccccCCCCCccccccCCCCCeeeCCCCHHHHHHHHHhhccCCCCcccccccccCCCCchhHHHHHHHHHHcCC
Confidence            99999999999999987799999998999999999999999999999999888777778899999999999999997 46


Q ss_pred             hHhHHHHHHHHhcCCCChHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhcCCC
Q 027582          160 DAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL  216 (221)
Q Consensus       160 ~~~~eel~~~y~~g~~~~~~lK~~lae~l~~~l~pire~~~~~~~~~l~~il~~~~~  216 (221)
                      ++++++++++|++|+++|++||+.||++|+++|+|||+||++++ ++|++||..+.+
T Consensus       315 ~~~~eel~~~~~~G~l~~gdlK~~lae~i~~~l~pirer~~~~~-~~v~~~l~~g~~  370 (392)
T 3jxe_A          315 DKKLKERYYACKNGELTCGECKRYLISKIQEFLKEHQRRRKKAE-KLVEKFKYTGKL  370 (392)
T ss_dssp             HHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHT-TSHHHHHTTSHH
T ss_pred             cchHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHcCcc
Confidence            88999999999999999999999999999999999999999999 799999998854

>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, AN recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A

Probab=100.00  E-value=1.6e-52  Score=385.83  Aligned_cols=210  Identities=62%  Similarity=1.041  Sum_probs=194.1

Q ss_pred             ccccccccHHHHHHhhCCCCCCcccccchhhhhccCCCCCCCCccccc--------CCCCcccccCCCCchHHHHHHHHH
Q 027582            2 VKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSG--------KDHLRCLIPCAIDQDPYFRMTRDV   73 (221)
Q Consensus         2 ~~l~r~~t~k~~~~~~g~~~~~~~g~l~YP~lqaa~~~~~~~~Dil~~--------~ad~~~~vpvG~DQ~~h~~laR~i   73 (221)
                      ++|+||+|++++++++++.++.++|+|+||+||||        |||.+        +...+|+||||.||++|++++|++
T Consensus       205 ~~v~rm~~~~~~k~r~~~~~~~s~gef~YPlLQAa--------Dil~l~~d~~~g~~~~~~~lVpvG~DQ~~~i~l~Rdl  276 (437)
T 1r6u_A          205 VKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAA--------PSFSNSFPQIFRDRTDIQCLIPCAIDQDPYFRMTRDV  276 (437)
T ss_dssp             HHHHHTCBHHHHHHHHCCCTTSBHHHHHHHHHHHG--------GGSGGGCHHHHTTCCCCEEEEEEEGGGHHHHHHHHHH
T ss_pred             HHHHhhccHHHHHHHhCCCCCCchHhHHHHHHHHH--------HHHHhhcchhcccccCCceEEEeehhhHHHHHHHHHH
Confidence            46899999999999998878899999999999999        78773        223448999999999999999999


Q ss_pred             HHHhCCCCccccccCcccCCCCCCCCcCCCCCCCceecCCCHHHHHHHHhhccccCCcchhhhhhhcCCCccchhHHHHH
Q 027582           74 APRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYL  153 (221)
Q Consensus        74 a~~~n~~~p~~l~~~~lp~L~g~~~KMSkS~~~s~I~L~D~p~~I~~KI~k~A~td~~~~~~~~~~~~~~p~v~~~~~~l  153 (221)
                      |+|||+++|.++++++||||+|+++|||||++||+|+|+|+|++|++||++|||||+..+.+++...++||+++++++||
T Consensus       277 a~r~~~~~P~~l~~pll~gLdG~~~KMSKS~~nsaI~L~D~p~~I~kKI~~ya~td~~~~~~~~~~~g~~pd~~~v~~~l  356 (437)
T 1r6u_A          277 APRIGYPKPALLHSTFFPALQGAQTKMSASDPNSSIFLTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYL  356 (437)
T ss_dssp             GGGGTCCCCEEEEECCCEETTEEEEECCTTSSSSCCBTTCCHHHHHHHHHHTSCCCBCSSHHHHHHHCBCTTTCHHHHHH
T ss_pred             HHHhCCCCceEeecccccCCCCCccccCCCCCCCeeeccCCHHHHHHHhhccccCCCccchhhccccCCCccHHHHHHHH
Confidence            99999999999999999999997679999999889999999999999999999999988877778889999999999999


Q ss_pred             hhhcCChHhHHHHHHHHhcCCCChHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhcCCCCCCCC
Q 027582          154 SFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPLPNMFD  221 (221)
Q Consensus       154 ~~~~~~~~~~eel~~~y~~g~~~~~~lK~~lae~l~~~l~pire~~~~~~~~~l~~il~~~~~~~~~~  221 (221)
                      ++|+.+++++++|+++|.+|+++++++|+.||+.|+++++|+|+||++++++.|++++..+++  .|+
T Consensus       357 ~~ft~~~~eieel~~~~~~G~~~~~~~K~~LAe~i~~~l~~~rer~~~~~~~~~~~~~~~~~~--~~~  422 (437)
T 1r6u_A          357 TFFLEDDDKLEQIRKDYTSGAMLTGELKKALIEVLQPLIAEHQARRKEVTDEIVKEFMTPRKL--SFD  422 (437)
T ss_dssp             HHHCCCHHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHTSCCCC--SCC
T ss_pred             HHHcCCHhHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccC--Ccc
Confidence            999877889999999999998999999999999999999999999999999889999999955  674

>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, rossmann fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor}

Probab=100.00  E-value=4.4e-53  Score=379.24  Aligned_cols=196  Identities=18%  Similarity=0.288  Sum_probs=176.1

Q ss_pred             ccccccccHHHHHHhhCCCCCCcccccchhhhhccCCCCCCCCcccccCCCCcccccCCCCchHHHHHHHHHHHHhCC--
Q 027582            2 VKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGY--   79 (221)
Q Consensus         2 ~~l~r~~t~k~~~~~~g~~~~~~~g~l~YP~lqaa~~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~~laR~ia~~~n~--   79 (221)
                      ++|+|+++++++.++++  ++.++|+|+||+||||        |||.|++   |+||||.||+||+||||++|+|||+  
T Consensus       105 ~~l~R~~~~k~~~~~~~--~~~~~g~~~YP~lQaa--------Dil~~~a---d~vpvG~DQ~~hlel~Rdia~rfn~~y  171 (341)
T 3sz3_A          105 GELSRMTQFKDKSARYA--NDVNAGLFGYPVLMAA--------DILLYGA---HQVPVGSDQKQHLELARDIATRFNNIY  171 (341)
T ss_dssp             HHHHTCHHHHHHHHHHG--GGCCHHHHHHHHHHHH--------HHHTTTC---SEECCCGGGHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhcc--CCCChhhHHhHHHHHH--------HHHHcCC---CEEEeccchHHHHHHHHHHHHHhchhc
Confidence            57899999999988763  5789999999999999        9999999   5799999999999999999999982  


Q ss_pred             -------CCcccc-c--cCcccCCCCCCCCcCCCCC--CCceecCCCHHHHHHHHhhccccCCcchhhhhhhcCCCccch
Q 027582           80 -------HKPALI-E--SSFFPALQGETGKMSASDP--NSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVD  147 (221)
Q Consensus        80 -------~~p~~l-~--~~~lp~L~g~~~KMSkS~~--~s~I~L~D~p~~I~~KI~k~A~td~~~~~~~~~~~~~~p~v~  147 (221)
                             +.|..+ .  +++||||+++++|||||++  +|+|+|+|+|++|++||++ |+||+..+.+++++++++|+++
T Consensus       172 g~~~~~f~~p~~li~~~~~~l~gL~dg~~KMSKS~~~~~~~I~L~D~p~~i~kKI~~-a~Td~~~~~~~~~~~~~~p~v~  250 (341)
T 3sz3_A          172 SPEQPIFTIPEPYIPTVNARVMSLQDATKKMSKSDDNRKNVITLLEDPKSIIKKINK-AQTDAETPPRIAYDVENKAGIA  250 (341)
T ss_dssp             CSSSCSSCCCEECCCSCCCCCEETTEEEEECCTTCSCGGGCCBTTCCHHHHHHHHHT-CCCCCCSSCCCCCCTTTCHHHH
T ss_pred             cCCCcccccChhhhccCcccccCCCCCCCccCCCCCCCCCeeecCCCHHHHHHHhhh-ccCCCCCCcccccCCCCCcchh
Confidence                   244433 2  5899999765679999998  6899999999999999999 9999987666778889999999


Q ss_pred             hHHHHHhhhcCChHhHHHHHHHHhcCCCChHHHHHHHHHHHHHHhHHHHHHHHHHhHH--HHHHHHhcC
Q 027582          148 IPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDE--MVDAFMAVR  214 (221)
Q Consensus       148 ~~~~~l~~~~~~~~~~eel~~~y~~g~~~~~~lK~~lae~l~~~l~pire~~~~~~~~--~l~~il~~~  214 (221)
                      |++.||++|  +++++++++++|+ |+++|++||+.|+++|+++|+|||+||++++++  +|++||+.+
T Consensus       251 ~l~~~~~~~--~~~~~e~i~~~~~-g~~~~g~~K~~lae~i~~~l~pirer~~~~~~~~~~l~~il~~G  316 (341)
T 3sz3_A          251 NLMGLYSAA--TGKTFAEIEAQYA-GVEMYGPFKKDVGEAVVAMLEPVQAEYQRIRNDREYLNSVMRDG  316 (341)
T ss_dssp             HHHHHHHHH--HCCCHHHHHHHTT-TCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHc--CCccHHHHHHHHc-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            999999999  4578999999998 668999999999999999999999999999876  899999875

>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A

Probab=100.00  E-value=4.6e-52  Score=386.84  Aligned_cols=209  Identities=61%  Similarity=1.025  Sum_probs=192.9

Q ss_pred             ccccccccHHHHHHhhCCCCCCcccccchhhhhccCCCCCCCCccccc--------CCCCcccccCCCCchHHHHHHHHH
Q 027582            2 VKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSG--------KDHLRCLIPCAIDQDPYFRMTRDV   73 (221)
Q Consensus         2 ~~l~r~~t~k~~~~~~g~~~~~~~g~l~YP~lqaa~~~~~~~~Dil~~--------~ad~~~~vpvG~DQ~~h~~laR~i   73 (221)
                      .+|+|++|++++++++++.++.++|+|+||+||||        |||.+        +...+|+||||.||++|++++|++
T Consensus       252 ~~l~r~~t~~~~k~r~~~~~~~s~gef~YPlLQAa--------Dil~l~~d~~~g~~~~~~~~VpvG~DQ~~~i~l~Rdl  323 (477)
T 1r6t_A          252 VKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAA--------PSFSNSFPQIFRDRTDIQCLIPCAIDQDPYFRMTRDV  323 (477)
T ss_dssp             HHHHHTCBHHHHHHHHCCCTTSBHHHHHHHHHHHG--------GGSGGGCHHHHTTCCCCEEEEEEEGGGHHHHHHHHHH
T ss_pred             HHHHhhccHHHHHHHhCCCCCCChhhhhhHHHHHH--------HHHHhccchhhccccCCceeEeccccHHHHHHHHHHH
Confidence            47899999999999998878899999999999999        77762        333448999999999999999999


Q ss_pred             HHHhCCCCccccccCcccCCCCCCCCcCCCCCCCceecCCCHHHHHHHHhhccccCCcchhhhhhhcCCCccchhHHHHH
Q 027582           74 APRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYL  153 (221)
Q Consensus        74 a~~~n~~~p~~l~~~~lp~L~g~~~KMSkS~~~s~I~L~D~p~~I~~KI~k~A~td~~~~~~~~~~~~~~p~v~~~~~~l  153 (221)
                      |+|||+++|.++++++||||+|+++|||||++||+|+|+|+|++|++||++||||++..+.+++...++||++++++.||
T Consensus       324 a~r~~~~~p~~l~~pll~gLdG~~~KMSKS~~nsaI~L~d~p~~i~kKi~~yA~t~~~~~~~~~~~~g~~pd~~~v~~~l  403 (477)
T 1r6t_A          324 APRIGYPKPALLHSTFFPALQGAQTKMSASDPNSSIFLTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYL  403 (477)
T ss_dssp             GGGGTCCCCEEEEECCCEETTEEEEECCTTSTTCCCBTTCCHHHHHHHHHHHSCCCSCSSHHHHHHHCCCTTTCHHHHHH
T ss_pred             HHHhCCCCceeeecccccCCCCCccccCCCCCCCceeecCCHHHHHHHhccccccCCccchhhccccCCCchHHHHHHHH
Confidence            99999999999999999999997679999999889999999999999999999999988877778889999999999999


Q ss_pred             hhhcCChHhHHHHHHHHhcCCCChHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhcCCCCCCC
Q 027582          154 SFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPLPNMF  220 (221)
Q Consensus       154 ~~~~~~~~~~eel~~~y~~g~~~~~~lK~~lae~l~~~l~pire~~~~~~~~~l~~il~~~~~~~~~  220 (221)
                      ++|+.+++++++|+++|.+|+++++++|+.||+.|+++|+|||+||++++++.|++++..+++  +|
T Consensus       404 ~~ft~~~~eieel~~~~~~G~~~~~~~K~~Lae~i~~~l~pirer~~~~~~~~v~~~~~~~~~--~~  468 (477)
T 1r6t_A          404 TFFLEDDDKLEQIRKDYTSGAMLTGELKKALIEVLQPLIAEHQARRKEVTDEIVKEFMTPRKL--AA  468 (477)
T ss_dssp             HHHCCCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHTSCCCC--C-
T ss_pred             HHHcCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc--hh
Confidence            999877889999999999998999999999999999999999999999999889999999955  66

>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A*

Probab=100.00  E-value=3.1e-51  Score=377.27  Aligned_cols=211  Identities=51%  Similarity=0.861  Sum_probs=183.4

Q ss_pred             cccccccHHHHHHhhCCCCCCcccccchhhhhccCCCCCCCCcccc---cCCCCcccccCCCCchHHHHHHHHHHHHhCC
Q 027582            3 KVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFS---GKDHLRCLIPCAIDQDPYFRMTRDVAPRIGY   79 (221)
Q Consensus         3 ~l~r~~t~k~~~~~~g~~~~~~~g~l~YP~lqaa~~~~~~~~Dil~---~~ad~~~~vpvG~DQ~~h~~laR~ia~~~n~   79 (221)
                      +|+||+|++++++++|+.++.++|+|+||+|||||+|.-++|.++.   |++   |+||||.||++|++++|++|+|||+
T Consensus       199 ~v~rm~~~~~~k~r~~~~~~~s~g~f~YPlLQAaDil~l~~d~~~~~~~~~~---~lvp~G~DQ~~~i~l~Rdla~r~~~  275 (432)
T 2ip1_A          199 RVSRQITGSTAKAVFGFNDSDCIGKFHFASIQIATAFPSSFPNVLGLPDKTP---CLIPCAIDQDPYFRVCRDVADKLKY  275 (432)
T ss_dssp             HHHTSCCHHHHHHTTCCCTTSCHHHHHTHHHHHHTTSGGGCTTTTCCCTTCC---EEEEEEGGGHHHHHHHHHHHHHHTS
T ss_pred             HHHhhhcHHHHHHHhCCCCCCchhhhhHHHHHHHHHHHhccchhhcccCCCc---eEEEeccCcHHHHHHHHHHHHHhCC
Confidence            5899999999999998878899999999999999333333332222   344   7999999999999999999999999


Q ss_pred             CCccccccCcccCCCCCCCCcCCCCCCCceecCCCHHHHHHHHhhccccCCcchhhhhhhcCCCccchhHHHHHhhhcCC
Q 027582           80 HKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLED  159 (221)
Q Consensus        80 ~~p~~l~~~~lp~L~g~~~KMSkS~~~s~I~L~D~p~~I~~KI~k~A~td~~~~~~~~~~~~~~p~v~~~~~~l~~~~~~  159 (221)
                      ++|.++++++||||+|+++|||||++||+|+|+|+|++|++||++||||++..+.+++...++||+++++++||++|..+
T Consensus       276 ~~p~~l~~~ll~gLdG~~~KMSKS~~nsaI~L~d~p~~i~~KI~~yA~t~~~~~~~~~~~~g~~pd~~~v~~~l~~f~~~  355 (432)
T 2ip1_A          276 SKPALLHSRFFPALQGSTTKMSASDDTTAIFMTDTPKQIQKKINKYAFSGGQVSADLHRELGGNPDVDVAYQYLSFFKDD  355 (432)
T ss_dssp             CCCEEEEECCCCCTTC--------CGGGCCBTTCCHHHHHHHHHHHSCCCSCSSHHHHHHHCCCTTTCHHHHHHHHHCCC
T ss_pred             CCceeeccccccCCCCCccccCCCCCCCeEeccCCHHHHHHHhhhhcccCCccchhhccccCCCchHHHHHHHHHHHCCC
Confidence            99999999999999998789999999889999999999999999999999988777778889999999999999999767


Q ss_pred             hHhHHHHHHHHhcCCCChHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhcCCC
Q 027582          160 DAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL  216 (221)
Q Consensus       160 ~~~~eel~~~y~~g~~~~~~lK~~lae~l~~~l~pire~~~~~~~~~l~~il~~~~~  216 (221)
                      ++++++|+++|.+|+++++++|+.||+.|+++++|+|+||++++++.+++++..+++
T Consensus       356 ~~eieel~~~~~~G~~~~~~~K~~La~~i~~~l~~~rer~~~~~~~~~~~~~~~~~~  412 (432)
T 2ip1_A          356 DVFLKECYDKYKSGELLSGEMKKLCIETLQEFVKAFQERRAQVDEETLDKFMVPHKL  412 (432)
T ss_dssp             HHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHSCCCC
T ss_pred             HhHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccHHHH
Confidence            899999999999998999999999999999999999999999999889999888865

>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid, structural genomics, niaid, center for structural genomics infectious diseases; 1.95A {Yersinia pestis} SCOP: c.26.1.1

Probab=100.00  E-value=4e-52  Score=373.39  Aligned_cols=195  Identities=17%  Similarity=0.287  Sum_probs=173.9

Q ss_pred             ccccccccHHHHHHhhCCCCCCcccccchhhhhccCCCCCCCCcccccCCCCcccccCCCCchHHHHHHHHHHHHhCC--
Q 027582            2 VKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGY--   79 (221)
Q Consensus         2 ~~l~r~~t~k~~~~~~g~~~~~~~g~l~YP~lqaa~~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~~laR~ia~~~n~--   79 (221)
                      ++|+|+++++++..+.  .++.++|+|+||+||||        |||.|++   |+||||+||+||+|||||+|+|||+  
T Consensus       114 ~~l~R~~~~k~~~~~~--~~~~~~g~~~YP~lQAa--------Dil~~~a---d~vpvG~DQ~~hleltRdia~rfn~~y  180 (346)
T 3n9i_A          114 GELSRMTQFKDKSARY--AENINAGLFDYPVLMAA--------DILLYQT---NQVPVGEDQKQHLELSRDIASRFNNLY  180 (346)
T ss_dssp             HHHHTCHHHHHHHHHS--GGGCBHHHHHHHHHHHH--------HHHTTTC---SEECCCGGGHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcc--CCCCCchhHHhHHHHHH--------HHHHhCc---eEEEeccchHHHHHHHHHHHHHhcccc
Confidence            5789999999988765  35689999999999999        9999999   5799999999999999999999993  


Q ss_pred             ----CCccccc---cCcccCCCCCCCCcCCCCCC--CceecCCCHHHHHHHHhhccccCCcchhhhhhhcCCCccchhHH
Q 027582           80 ----HKPALIE---SSFFPALQGETGKMSASDPN--SAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPV  150 (221)
Q Consensus        80 ----~~p~~l~---~~~lp~L~g~~~KMSkS~~~--s~I~L~D~p~~I~~KI~k~A~td~~~~~~~~~~~~~~p~v~~~~  150 (221)
                          +.|..+.   +++||||+++++|||||++|  |+|+|+|+|++|++||++ ||||+..+.+++++++++|+++|++
T Consensus       181 g~~f~~p~~li~~~~~~l~gL~dg~~KMSKS~~~~~~~I~L~D~p~~i~kKI~k-A~Td~~~~~~~~~~~~~~p~v~~l~  259 (346)
T 3n9i_A          181 GDIFKIPEPFIPKAGARVMSLQDPTKKMSKSDDNRNNVIELLEDPKSVVKKIKR-AMTDSDEPALIRYDVEKKAGVSNLL  259 (346)
T ss_dssp             SSCSCCCEECCCCCCCCCBCSSCTTSBCCTTCSCGGGCCBTTSCHHHHHHHHHT-CCCCCCSSCCCCCCTTTCHHHHHHH
T ss_pred             CCcccccchhccCCcccCccCCCCccccCCCCCCCCceecCCCCHHHHHHHHHh-CcCCCCCCccccCCCCCCCChhHHH
Confidence                4555443   37999997666899999986  899999999999999999 9999987555667889999999999


Q ss_pred             HHHhhhcCChHhHHHHHHHHhcCCCChHHHHHHHHHHHHHHhHHHHHHHHHHhHH--HHHHHHhcC
Q 027582          151 KYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDE--MVDAFMAVR  214 (221)
Q Consensus       151 ~~l~~~~~~~~~~eel~~~y~~g~~~~~~lK~~lae~l~~~l~pire~~~~~~~~--~l~~il~~~  214 (221)
                      .|++.|  +++++++++++|.+|  ++++||+.|+++|+++|+|||+||+++++|  +|++||+.+
T Consensus       260 ~~~~~~--~~~~~eel~~~y~~~--~~g~lK~~lae~l~~~L~pirer~~~~~~~~~~l~~il~~G  321 (346)
T 3n9i_A          260 DILSGV--TGQSIPELEAQFTGQ--MYGHLKGAVADAVSGMLSELQERYRTYREDEALLQDVMREG  321 (346)
T ss_dssp             HHHHHH--HCCCHHHHHHHTTTC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHhc--CCccHHHHHHHHhCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence            999999  457899999999855  699999999999999999999999999976  999999875

>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis, translation, class I tRNA synth rossman fold, high motif, KMSKS motif; 2.80A {Bacillus subtilis}

Probab=100.00  E-value=2.9e-51  Score=372.33  Aligned_cols=192  Identities=21%  Similarity=0.272  Sum_probs=162.3

Q ss_pred             ccccccccHHHHHHhhCCCCCCcccccchhhhhccCCCCCCCCcccccCCCCcccccCCCCchHHHHHHHHHHHHhCC--
Q 027582            2 VKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGY--   79 (221)
Q Consensus         2 ~~l~r~~t~k~~~~~~g~~~~~~~g~l~YP~lqaa~~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~~laR~ia~~~n~--   79 (221)
                      ++|+|+++||++.+..   +++++|+|+||+||||        |||.|++   |+||||+||+||+|+|||||+|||+  
T Consensus       134 ~~L~R~~~fk~k~~~~---~~~~~g~~~YPvLQAA--------DIl~~~a---d~vPvG~DQ~~hleltRdia~rfn~~y  199 (388)
T 3prh_A          134 GELERMTQFKDKSKGN---EAVVSGLLTYPPLMAA--------DILLYGT---DLVPPGEDQKQHLELTRNLAERFNKKY  199 (388)
T ss_dssp             HHHHTTC-------------CCBHHHHSCHHHHHH--------HHHTTTC---CEECCCSSCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHhhhhHhHHhhcc---CCCcchhHhhHHHHHH--------HHHHhCC---CEEEechhHHHHHHHHHHHHHHhCccc
Confidence            5788999998876643   5789999999999999        9999999   5799999999999999999999994  


Q ss_pred             ----CCccccc---cCcccCCCCCCCCcCCCCC--CCceecCCCHHHHHHHHhhccccCCcchhhhhhhcCCCccchhHH
Q 027582           80 ----HKPALIE---SSFFPALQGETGKMSASDP--NSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPV  150 (221)
Q Consensus        80 ----~~p~~l~---~~~lp~L~g~~~KMSkS~~--~s~I~L~D~p~~I~~KI~k~A~td~~~~~~~~~~~~~~p~v~~~~  150 (221)
                          +.|..+.   +++||||+|+++|||||++  +|+|+|+|+|++|++||++ |+||+...++  ++++++|+++|++
T Consensus       200 ~~~f~~p~~li~~~~~~l~gL~dg~~KMSKS~~~~~n~I~L~D~p~~I~kKI~k-a~TD~~~~~~--~~~~~~p~v~~l~  276 (388)
T 3prh_A          200 NDIFTIPEVKIPKVGARIMSLNDPLKKMSKSDPNQKAYITLLDEPKQLEKKIKS-AVTDSEGIVK--FDKENKPGVSNLL  276 (388)
T ss_dssp             CSCCCCCEECCCSCCCCCBCSSCTTSBCCTTCSSTTSCCBTTCCHHHHHHHHHT-CCCCSSCCCC--CCTTTCHHHHHHH
T ss_pred             CCCcccchhhhcccccccccCCCCCCccCCCCCCCCCeeecCCCHHHHHHHHhh-ccCCCCCccc--CCCCCCCCcchHH
Confidence                2233222   4789999887789999997  7899999999999999999 9999875433  5678999999999


Q ss_pred             HHHhhhcCChHhHHHHHHHHhcCCCChHHHHHHHHHHHHHHhHHHHHHHHHHhHH-HHHHHHhcC
Q 027582          151 KYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDE-MVDAFMAVR  214 (221)
Q Consensus       151 ~~l~~~~~~~~~~eel~~~y~~g~~~~~~lK~~lae~l~~~l~pire~~~~~~~~-~l~~il~~~  214 (221)
                      .|+++|  +++++++++++|+ |. +|++||+.|+++|+++|+|||+||+++++| +|++||+.+
T Consensus       277 ~i~~~~--~~~~~eel~~~y~-g~-~~g~lK~~lae~l~~~l~pirer~~~~~~~~~l~~il~~G  337 (388)
T 3prh_A          277 TIYSIL--GNTTIEELEAKYE-GK-GYGEFKGDLAEVVVNALKPIQDRYYELIESEELDRILDEG  337 (388)
T ss_dssp             HHHHHH--HTCCHHHHHHHTT-TC-CHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHH
T ss_pred             HHHHhc--CCCcHHHHHHHHc-CC-CHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHH
Confidence            999999  4568999999999 75 999999999999999999999999999876 899999875

>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3m5w_A*

Probab=100.00  E-value=4.9e-50  Score=357.31  Aligned_cols=189  Identities=19%  Similarity=0.252  Sum_probs=169.1

Q ss_pred             ccccccccHHHHHHhhCCCCCCcccccchhhhhccCCCCCCCCcccccCCCCcccccCCCCchHHHHHHHHHHHHhCC--
Q 027582            2 VKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGY--   79 (221)
Q Consensus         2 ~~l~r~~t~k~~~~~~g~~~~~~~g~l~YP~lqaa~~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~~laR~ia~~~n~--   79 (221)
                      .+|+|++|||+..+.   .++.++|+|+||+||||        |||.|++   |+||||.||+||+++|||+|+|||+  
T Consensus       102 ~~l~r~~~~K~~~~~---~~~~~~g~f~YP~LQAa--------Dil~~~~---~~vpvG~DQ~~hi~l~Rdia~r~n~~~  167 (322)
T 3tzl_A          102 GLLERAHSYKDKVAK---GLSASHGLFSYPVLMAA--------DILLFDT---RIVPVGKDQIQHVEIARDIALKVNNEW  167 (322)
T ss_dssp             HHHHSCHHHHHHHHT---TCCCBHHHHHHHHHHHH--------HHHHTTC---SEEECCGGGHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhhHHHHHHcc---CCCCchHHHHHHHHHHH--------HHHHhCC---cEEEeccchHHHHHHHHHHHHHhcccc
Confidence            467788888876554   35799999999999999        9999999   5899999999999999999999986  


Q ss_pred             ----CCcccc---ccCcccCCCCCCCCcCCCCCCCceecCCCHHHHHHHHhhccccCCcchhhhhhhcCCCccchhHHHH
Q 027582           80 ----HKPALI---ESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKY  152 (221)
Q Consensus        80 ----~~p~~l---~~~~lp~L~g~~~KMSkS~~~s~I~L~D~p~~I~~KI~k~A~td~~~~~~~~~~~~~~p~v~~~~~~  152 (221)
                          ++|..+   .+++||||+|  +|||||++| +|+|+|+|++|++||++ |+||+...    + ..+||+++++++|
T Consensus       168 g~~f~~P~~~~~~~~~~l~~l~G--~KMSKS~~n-~I~L~d~p~~i~~KI~~-a~td~~~~----~-~~~~~~~~~v~~~  238 (322)
T 3tzl_A          168 GEIFTLPEARVNEEVAVVVGTDG--AKMSKSYQN-TIDIFSSEKTLKKQISS-IVTDSTAL----E-DPKDHENCNIFKI  238 (322)
T ss_dssp             CSCSCCCEEECCCSSCCCBCTTS--SBCCGGGTC-CCBSSCCHHHHHHHHHT-CCCCCCCT----T-SCCCGGGCHHHHH
T ss_pred             cCCCCCchhhhccccccccCCCC--CcCCCCCCC-ceecCCCHHHHHHHHHh-ccCCCccc----c-CCCCCcchhHHHH
Confidence                555443   3799999999  799999986 89999999999999999 99999864    2 2578999999999


Q ss_pred             HhhhcCChHhHHHHHHHHhcCCCChHHHHHHHHHHHHHHhHHHHHHHHHHhHH--HHHHHHhcC
Q 027582          153 LSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDE--MVDAFMAVR  214 (221)
Q Consensus       153 l~~~~~~~~~~eel~~~y~~g~~~~~~lK~~lae~l~~~l~pire~~~~~~~~--~l~~il~~~  214 (221)
                      +++|+ +.+++++++++|++|+++++++|+.||+.|+++|+|||+||+++++|  +|++||+.+
T Consensus       239 ~~~~~-~~~~i~~l~~~~~~g~~~~~~~K~~lae~l~~~l~pir~~~~~~~~~~~~l~~il~~G  301 (322)
T 3tzl_A          239 AKLFL-DESGQKELQIRYEKGGEGYGHFKIYLNELVNAYFKEAREKYNELLEKPSHLKEILDFG  301 (322)
T ss_dssp             HGGGC-CHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHHTHHHHHHHHHHHHSHHHHHHHHHHH
T ss_pred             HHHhC-ChhHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHcCHHHHHHHHHHH
Confidence            99996 57899999999999889999999999999999999999999999986  999999875

>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A

Probab=100.00  E-value=5.2e-50  Score=358.00  Aligned_cols=192  Identities=22%  Similarity=0.314  Sum_probs=172.0

Q ss_pred             ccccccccHHHHHHhhCCCCCCcccccchhhhhccCCCCCCCCcccccCCCCcccccCCCCchHHHHHHHHHHHHhC---
Q 027582            2 VKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIG---   78 (221)
Q Consensus         2 ~~l~r~~t~k~~~~~~g~~~~~~~g~l~YP~lqaa~~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~~laR~ia~~~n---   78 (221)
                      .+|+|+++|+++.++ +  ++.++|+|+||+||||        |||.|++   ++||||.||+||++++|++|+|||   
T Consensus       100 ~~l~r~~~~k~~~~~-~--~~~~~g~f~YPvLQaa--------Dil~~~~---~~vpvG~DQ~~~iel~Rdia~r~n~~y  165 (328)
T 1i6k_A          100 GELERMTQFKEKSAG-K--EAVSAGLLTYPPLMAA--------DILLYNT---DIVPVGEDQKQHIELTRDLAERFNKRY  165 (328)
T ss_dssp             HHHHTCHHHHHHHTT-C--SSCCHHHHTHHHHHHH--------HHHTTTC---SEEECCGGGHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhc-c--CCCCchhhccHHHHHH--------HHHHhCC---CEEecccchHHHHHHHHHHHHHhCccc
Confidence            578999999988765 2  6789999999999999        9999999   579999999999999999999999   


Q ss_pred             ---CCCccccc---cCcccCCCCCCCCcCCCCCCCc--eecCCCHHHHHHHHhhccccCCcchhhhhhhcCCCccchhHH
Q 027582           79 ---YHKPALIE---SSFFPALQGETGKMSASDPNSA--IYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPV  150 (221)
Q Consensus        79 ---~~~p~~l~---~~~lp~L~g~~~KMSkS~~~s~--I~L~D~p~~I~~KI~k~A~td~~~~~~~~~~~~~~p~v~~~~  150 (221)
                         +++|..+.   +++||||+|+++|||||++|++  |+|+|+|++|++||++ |+||+..++.  ++++++|++++++
T Consensus       166 g~~f~~P~~li~~~~~~l~gl~G~~~KMSKS~~n~~~~I~L~d~~~~i~~KI~~-a~td~~~~~~--~~~~~~p~v~~~~  242 (328)
T 1i6k_A          166 GELFTIPEARIPKVGARIMSLVDPTKKMSKSDPNPKAYITLLDDAKTIEKKIKS-AVTDSEGTIR--YDKEAKPGISNLL  242 (328)
T ss_dssp             CSCCCCCEEECCSSSSSCBCSSCTTSBCCTTCSCGGGCCBTTCCHHHHHHHHHH-CCCCSSCCCC--CBTTTBHHHHHHH
T ss_pred             ccccCCCeeeeccccccccCCCCCccCCCCCCCCcCceeeecCCHHHHHHHHHh-cCCCCccccc--cCCCCCcchhhHH
Confidence               45676553   6999999998889999999866  9999999999999999 9999975432  5667789999999


Q ss_pred             HHHhhhcCChHhHHHHHHHHhcCCCChHHHHHHHHHHHHHHhHHHHHHHHHHhHH-HHHHHHhcC
Q 027582          151 KYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDE-MVDAFMAVR  214 (221)
Q Consensus       151 ~~l~~~~~~~~~~eel~~~y~~g~~~~~~lK~~lae~l~~~l~pire~~~~~~~~-~l~~il~~~  214 (221)
                      .|+.+|  +++++++|+++|. | ++++++|+.||+.|+++|+|||+||++++++ .|++||..+
T Consensus       243 ~~~~~~--~~~~~~el~~~~~-g-~~~~~~K~~La~~i~~~l~pire~~~~~~~~~~~~~il~~g  303 (328)
T 1i6k_A          243 NIYSTL--SGQSIEELERQYE-G-KGYGVFKADLAQVVIETLRPIQERYHHWMESEELDRVLDEG  303 (328)
T ss_dssp             HHHHHH--HCCCHHHHHHHTT-T-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTHHHHHHHHH
T ss_pred             HHHHHC--CchhHHHHHHHHc-C-CCHHHHHHHHHHHHHHHhHHHHHHHHHHhCChhHHHHHHHH
Confidence            999999  5678999999999 8 8999999999999999999999999999876 699998865

>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae}

Probab=100.00  E-value=2.2e-50  Score=362.89  Aligned_cols=194  Identities=18%  Similarity=0.217  Sum_probs=169.4

Q ss_pred             ccccccccHHHHHHhhCC----CCCCcccccchhhhhccCCCCCCCCcccccCCCCcccccCCCCchHHHHHHHHHHHHh
Q 027582            2 VKVAKCVTYNKVVGIFGF----TGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRI   77 (221)
Q Consensus         2 ~~l~r~~t~k~~~~~~g~----~~~~~~g~l~YP~lqaa~~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~~laR~ia~~~   77 (221)
                      .+|+|+++||+..++.+|    .++.++|+|+||+||||        |||.|++   ++||||.||+||+|++|++|+||
T Consensus       103 ~~l~R~~~~k~~~~~~~~~~~~~~~~~~g~~~YPvLQaa--------Dil~~~a---~~vpvG~DQ~~~lel~Rdia~r~  171 (348)
T 2yy5_A          103 GELQRMTQFKAKKAEQTRNPNGTLNIPTGLLTYPALMAG--------DILLYQP---DIVPVGNDQKQHLELTRDLAQRI  171 (348)
T ss_dssp             HHHHHCHHHHTTC-----------CCBTHHHHHHHHHHH--------HHHTTCC---SEEECCGGGHHHHHHHHHHHHHH
T ss_pred             HHHhchHHHHHHHHhhccccccCCCCChhhhhhHHHHHH--------HHHHhCc---cEEEecccHHHHHHHHHHHHHHh
Confidence            578899999887665432    45789999999999999        9999999   57999999999999999999999


Q ss_pred             C------CCCccccc---cCcccCCCCCCCCcCCCCCCC--ceecCCCHHHHHHHHhhccccCCcchhhhhhhcCCCccc
Q 027582           78 G------YHKPALIE---SSFFPALQGETGKMSASDPNS--AIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEV  146 (221)
Q Consensus        78 n------~~~p~~l~---~~~lp~L~g~~~KMSkS~~~s--~I~L~D~p~~I~~KI~k~A~td~~~~~~~~~~~~~~p~v  146 (221)
                      |      +++|..++   +++||||+|+++|||||++|+  +|+|+|+|++|++||++ |+||+..+..  ++++++|++
T Consensus       172 n~~yg~~f~~P~~l~~~~~~~l~gL~g~~~KMSKS~~n~~~~I~L~D~~~~i~~KI~~-a~td~~~~~~--~~~~~~p~v  248 (348)
T 2yy5_A          172 QKKFKLKLRLPQFVQNKDTNRIMDLFDPTKKMSKSSKNQNGVIYLDDPKEVVVKKIRQ-ATTDSFNKIR--FASKTQPGV  248 (348)
T ss_dssp             HHHHCCCCCCCEEECCTTTTTCBCSSCTTSBCCSSCSCGGGCCBTTCCHHHHHHHHHT-CCCCSSCCCS--CCTTTCHHH
T ss_pred             hhhcccccCCCeeecccccccccCCCCcchhcCCCCCCCCceEeecCCHHHHHHHHHh-CCCCCccccc--cCCCCCCch
Confidence            8      56787766   599999999888999999975  89999999999999999 9999975433  567789999


Q ss_pred             hhHHHHHhhhcCChHhHH---------HHHHHHhcCCCChHHHHHHHHHHHHHHhHHHHHHHHHHhHH-HHHHHHhcC
Q 027582          147 DIPVKYLSFFLEDDAELE---------HIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDE-MVDAFMAVR  214 (221)
Q Consensus       147 ~~~~~~l~~~~~~~~~~e---------el~~~y~~g~~~~~~lK~~lae~l~~~l~pire~~~~~~~~-~l~~il~~~  214 (221)
                      ++++.|+.+|  ++++++         +|+++|. | ++++++|+.||++|+++|+|||+||+++ +| .|+++|..+
T Consensus       249 ~~~~~~~~~~--~~~~~~~~~~~~~~~el~~~~~-g-~~~~~~K~~La~~i~~~l~pire~~~~~-~d~~~~~~l~~G  321 (348)
T 2yy5_A          249 TNMLTILKAL--LKEPVNQSLTNQLGNDLEAYFS-T-KSYLDLKNALTEATVNLLVNIQRKREQI-SREQVFNCLQAG  321 (348)
T ss_dssp             HHHHHHHHHH--TTSGGGHHHHHHHCSCHHHHGG-G-CCHHHHHHHHHHHHHHHHHHHHHHHHSS-CHHHHHHHHHHH
T ss_pred             hhHHHHHHhC--ChHhhhhhcccchHHHHHHHHc-C-CCHHHHHHHHHHHHHHHHHHHHHHHHHh-cCchHHHHHHHH
Confidence            9999999999  567899         9999999 7 8999999999999999999999999999 55 599999875

>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga maritima}

Probab=100.00  E-value=3.1e-49  Score=354.49  Aligned_cols=195  Identities=20%  Similarity=0.232  Sum_probs=167.9

Q ss_pred             ccccccccHHHHHHhhCCCCCCcccccchhhhhccCCCCCCCCcccccCCCCcccccCCCCchHHHHHHHHHHHHhCC--
Q 027582            2 VKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGY--   79 (221)
Q Consensus         2 ~~l~r~~t~k~~~~~~g~~~~~~~g~l~YP~lqaa~~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~~laR~ia~~~n~--   79 (221)
                      .+|.|++|||+.+.+++..++.++|+|+||+||||        |||.|++   ++||||.||+||++++|++|+|||+  
T Consensus       113 ~~l~r~~~~k~~~~r~~~~~~~~~g~f~YPvLQAa--------Dil~~~~---~~vpvG~DQ~~hi~l~rdia~r~n~~y  181 (340)
T 2g36_A          113 SRLERVPTYKEIKSELNYKDLSTAGFLIYPVLQAA--------DILIYKA---EGVPVGEDQVYHIELTREIARRFNYLY  181 (340)
T ss_dssp             HHHHTCHHHHTC-------CCCSHHHHTHHHHHHH--------HHHTTTC---SEEEECGGGHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHhHHHHhHHHHhccCCCCChHHhhhHHHHHh--------hHHHhCC---CEEEcccchHHHHHHHHHHHHHhhhhc
Confidence            46777888877322333345689999999999999        9999999   5899999999999999999999973  


Q ss_pred             ----CCccc--cccCcccCCCCCCCCcCCCCCCCceecCCCHHHHHHHHhhccccCCcchhhhhhhcCCCccchhHHHHH
Q 027582           80 ----HKPAL--IESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYL  153 (221)
Q Consensus        80 ----~~p~~--l~~~~lp~L~g~~~KMSkS~~~s~I~L~D~p~~I~~KI~k~A~td~~~~~~~~~~~~~~p~v~~~~~~l  153 (221)
                          ++|..  .++++||||+|  .|||||++| +|+|+|+|++|++||++ |+||+..   .++..+++|++++++.|+
T Consensus       182 g~~f~~P~~~~~~~~~l~gldG--~KMSKS~~n-~I~L~dsp~~i~~Ki~~-a~td~~~---~~~~~~~~p~~~~v~~~~  254 (340)
T 2g36_A          182 DEVFPEPEAILSRVPKLPGTDG--RKMSKSYGN-IINLEISEKELEQTILR-MMTDPAR---VRRSDPGNPENCPVWKYH  254 (340)
T ss_dssp             CCCCCCCEEEECCSCCCCCTTS--SCCCGGGTC-CCBTTCCHHHHHHHHHT-CCCCTTC---SSTTSCCCGGGCHHHHHH
T ss_pred             ccccCCchhhhccccccCCCCc--cccCCCCCC-eEeeeCCHHHHHHHHHh-CCCCccc---ccccCCCCCchhHHHHHH
Confidence                56764  34799999998  499999986 89999999999999999 9999865   234456999999999999


Q ss_pred             hhhcCChHhHHHHHHHHhcCCCChHHHHHHHHHHHHHHhHHHHHHHHHHhHH--HHHHHHhcC
Q 027582          154 SFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDE--MVDAFMAVR  214 (221)
Q Consensus       154 ~~~~~~~~~~eel~~~y~~g~~~~~~lK~~lae~l~~~l~pire~~~~~~~~--~l~~il~~~  214 (221)
                      ++|+++.+++++|+++|.+|+++++++|+.||+.|+++|+|||+||++++++  +|++||..+
T Consensus       255 ~~f~~~~~~ieel~~~~~~g~~~~~~~K~~La~~i~~~l~pire~~~~~~~~~~~~~~il~~g  317 (340)
T 2g36_A          255 QAFDISEEESKWVWEGCTTASIGCVDCKKLLLKNMKRKLAPIWENFRKIDEDPHYVDDVIMEG  317 (340)
T ss_dssp             HHTTCCHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTHHHHHHHHH
T ss_pred             HHHCCCHhHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence            9997557778999999999889999999999999999999999999999987  899999865

>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A*

Probab=100.00  E-value=7e-49  Score=353.52  Aligned_cols=196  Identities=25%  Similarity=0.331  Sum_probs=176.8

Q ss_pred             ccccccccHHHHHHhhCCCCCCcccccchhhhhccCCCCCCCCcccccCCCCcccccCCCCchHHHHHHHHHHHHhC---
Q 027582            2 VKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIG---   78 (221)
Q Consensus         2 ~~l~r~~t~k~~~~~~g~~~~~~~g~l~YP~lqaa~~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~~laR~ia~~~n---   78 (221)
                      .+|+|++|+|++.+..||.++.++|+|+||+||||        |||.|++   ++||||.||+||++++|++|+|||   
T Consensus       122 ~~l~r~~~~k~~~~~~~f~~~~~~g~f~YPvLQAa--------Dil~~~~---~~vpvG~DQ~~hi~l~rdia~r~n~~y  190 (351)
T 1yi8_B          122 SHLRQNPTVKAEIAQKGYGERVPAGFFVYPVSQAA--------DIAAFGA---TLVPVGDDQLPMLEQTREIVRRFNALY  190 (351)
T ss_dssp             HHHHTCHHHHHHHHHHTCTTCCBHHHHHHHHHHHH--------HHHHHTC---SEEEECGGGHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHhhhHHHHHHhhcCCCCCCchHhhhhHHHHHh--------hHHhcCC---CEEEecCCcHHHHHHHHHHHHHHHhhc
Confidence            57889999999998877777899999999999999        9999999   579999999999999999999997   


Q ss_pred             ---CCCcccc--ccCcccCCCCCCCCcCCCCCCCceecCCCHHHHHHHHhhccccCCcchhhhhhhcCCCccchhHHHHH
Q 027582           79 ---YHKPALI--ESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYL  153 (221)
Q Consensus        79 ---~~~p~~l--~~~~lp~L~g~~~KMSkS~~~s~I~L~D~p~~I~~KI~k~A~td~~~~~~~~~~~~~~p~v~~~~~~l  153 (221)
                         +++|..+  ++++||||+| ++|||||++| +|+|+|+|++|++||++ |+||+..   .+...++|++.++++.|+
T Consensus       191 g~~f~~P~~~~~~~~~l~~ldG-~~KMSKS~~n-~I~L~d~p~~i~~Ki~~-a~td~~~---~~~~~~~~~~~~~~~~~l  264 (351)
T 1yi8_B          191 APVLAEPQAQLSRVPRLPGLDG-QAKMSKSLGN-AIALGDSADEVARKVMG-MYTDPGH---LRASDPGRVEGNPVFTFL  264 (351)
T ss_dssp             CSCSCCCEEEECSSCSCCCTTS-SSCCCTTTTC-CCBTTCCHHHHHHHHHT-CCCCTTC---CSTTSCCCCTTCTTHHHH
T ss_pred             ccccCCCeeeeecCccccCCCC-ccccCCCCCC-eecCCCCHHHHHHHHHh-cCCCccc---ccccCCCCCccchHHHHH
Confidence               3677654  3699999998 3699999997 99999999999999999 9999863   335567889999999999


Q ss_pred             hhhcCChHhHHHHHHHHhcCCCChHHHHHHHHHHHHHHhHHHHHHHHHHhHH--HHHHHHhcC
Q 027582          154 SFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDE--MVDAFMAVR  214 (221)
Q Consensus       154 ~~~~~~~~~~eel~~~y~~g~~~~~~lK~~lae~l~~~l~pire~~~~~~~~--~l~~il~~~  214 (221)
                      .+|+.+.+++++|+++|.+|+++|+++|+.||+.|+++|+|+|+||+++++|  +|+++|..+
T Consensus       265 ~~~~~~~~~ieel~~~~~~g~~~~~~~K~~La~~i~~~l~pire~~~~~~~~~~~l~~il~~G  327 (351)
T 1yi8_B          265 DAFDPDPARVQALKDQYRAGGLGDVKVKKHLIDVLNGVLAPIRTRRAEYERDPDAVLRFVTEG  327 (351)
T ss_dssp             HHHCSCHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHcCChhHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHHHHHH
Confidence            9997667788999999999889999999999999999999999999999986  899999865

>3a04_A Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding, protein biosynthesis; 1.97A {Aeropyrum pernix} PDB: 3a05_A*

Probab=100.00  E-value=2.3e-48  Score=352.42  Aligned_cols=196  Identities=30%  Similarity=0.425  Sum_probs=173.8

Q ss_pred             cccccccHHHHHHhhCCCCCCcccccchhhhhccCCCCCCCCcccccCCCC-----cccccCCCCchHHHHHHHHHHHHh
Q 027582            3 KVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHL-----RCLIPCAIDQDPYFRMTRDVAPRI   77 (221)
Q Consensus         3 ~l~r~~t~k~~~~~~g~~~~~~~g~l~YP~lqaa~~~~~~~~Dil~~~ad~-----~~~vpvG~DQ~~h~~laR~ia~~~   77 (221)
                      .+++.+|+.++.+.+|   ..+.|+++||+||||        |||++++|.     +|+||||+||+||+||||+||+||
T Consensus       164 ~~~~~~~~~~~~~~~~---~~~~~~~~yP~lqAa--------Dil~~~~d~~~gy~a~~VPVG~DQ~~hleltRdiA~rf  232 (372)
T 3a04_A          164 LFSGKVTAAEMEAIYG---ELTPAKMMASLTQAA--------DILHVQLDEYGGYRHVVVPVGADQDPHLRLTRDLADRM  232 (372)
T ss_dssp             HHTTSSCHHHHHHHHS---SCCHHHHHHHHHHHH--------HHHGGGSGGGTCCCCEEEEEEGGGHHHHHHHHHHHHHT
T ss_pred             HHHhhhhHHHHhhhhh---ccCcccccCCcchhH--------HHhhhcCccccCccceecccchhhHHHHHHHHHHHHHh
Confidence            4678889999998875   368899999999999        777643331     279999999999999999999999


Q ss_pred             C----CCCccccccCcccCCCCCCCCcCCCCCCCceecCCCHHHHHHHHhhccccCCcchhhhhhhcCCCccchhHHHHH
Q 027582           78 G----YHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYL  153 (221)
Q Consensus        78 n----~~~p~~l~~~~lp~L~g~~~KMSkS~~~s~I~L~D~p~~I~~KI~k~A~td~~~~~~~~~~~~~~p~v~~~~~~l  153 (221)
                      |    .++|..++++++|||+|  .|||||++||+|+|+|+|++|++||++ |+||+..+.+.+...+|+|++++++.++
T Consensus       233 n~~~~~~~P~~~~~~~~pgldG--~KmS~S~~ns~I~l~D~p~~i~kKI~k-a~td~~~~~~~~~~~~G~p~~~~i~~~~  309 (372)
T 3a04_A          233 AGVVELERPASTYHKLQPGLDG--RKMSSSRPDSTIFLTDPPEVARNKLFR-ALTGGRATAEEQRRLGGVPEVCSVYHMD  309 (372)
T ss_dssp             TTTSCCCCCEEEEECCCBCTTS--SBCCTTSGGGSCBTTCCHHHHHHHHHT-CCCSCCSSHHHHHHHCCCGGGCHHHHHH
T ss_pred             cCcccccChhhhhhcccCCCCC--CccCCCCCCcccccCCCHHHHHHHHhc-CccCCCCCcccccccCCCCchhhHHHHH
Confidence            9    58899999999999999  699999999999999999999999999 9999999989889999999999999874


Q ss_pred             -hhhcCChHhHHHHHHHHhcCCCChHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhc
Q 027582          154 -SFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAV  213 (221)
Q Consensus       154 -~~~~~~~~~~eel~~~y~~g~~~~~~lK~~lae~l~~~l~pire~~~~~~~~~l~~il~~  213 (221)
                       .++..+++++++++++|++|+++|++||+.|++.|+++|+|+|+||++..+ +++++|+.
T Consensus       310 l~~~~~d~~e~~ei~~~y~~G~l~~ge~K~~l~e~l~~~l~p~rer~e~~~~-~~~kile~  369 (372)
T 3a04_A          310 LYHLMPDDGEVKHIYTSCRLGKILCGECKQIAWEKLERFLAEHQSRLEKAKT-IAWKLVEP  369 (372)
T ss_dssp             HHTTCCSHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHTSCCC
T ss_pred             HHccCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhHH-HHHHHhcc
Confidence             334457889999999999999999999999999999999999999998655 77777654

>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus}

Probab=100.00  E-value=2.9e-48  Score=347.87  Aligned_cols=192  Identities=23%  Similarity=0.268  Sum_probs=162.0

Q ss_pred             ccccccccHHHHHHhhCCCCCCcccccchhhhhccCCCCCCCCcccccCCCCcccccCCCCchHHHHHHHHHHHHhC---
Q 027582            2 VKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIG---   78 (221)
Q Consensus         2 ~~l~r~~t~k~~~~~~g~~~~~~~g~l~YP~lqaa~~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~~laR~ia~~~n---   78 (221)
                      .+|+|++|||+..+   ..+++++|+|+||+||||        |||.|++   ++||||.||+||++++|++|+|||   
T Consensus       104 ~~l~r~~~~k~r~~---~~~~~~~g~f~YPvLQaa--------Dil~~~~---~lvp~G~DQ~~~i~l~rdla~r~n~~~  169 (337)
T 2el7_A          104 GDLTRMTQFKDKAS---KQETVWSGLLMYPVLQAA--------DILIYKA---DTVPVGEDQVQHIELTREIARRFNHLF  169 (337)
T ss_dssp             HHHHTSHHHHHHTT---SSSCCBHHHHHHHHHHHH--------HHHHTTC---CEEECCGGGCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhHHHHHHhc---cCCCCChHHHHhHHHHHh--------hHHhhCC---cEEEcccchHHHHHHHHHHHHHHHhhc
Confidence            46778888877553   246789999999999999        9999999   589999999999999999999986   


Q ss_pred             ---CCCcccccc---CcccCCCCCCCCcCCCCCCCceecCCCHHHHHHHHhhccccCCcchhhhhhhcCCCccchhHHHH
Q 027582           79 ---YHKPALIES---SFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKY  152 (221)
Q Consensus        79 ---~~~p~~l~~---~~lp~L~g~~~KMSkS~~~s~I~L~D~p~~I~~KI~k~A~td~~~~~~~~~~~~~~p~v~~~~~~  152 (221)
                         +++|..+++   ++||||+| ++|||||++| +|+|+|+|++|++||++ |+||+..+.+  + .+++|++++++.|
T Consensus       170 g~~f~~P~~~~~~~~p~l~gldG-~~KMSKS~~n-~I~L~d~p~~i~~Ki~~-a~td~~~~~~--~-~~~~p~~~~v~~~  243 (337)
T 2el7_A          170 GETFPEPQALLNPEAPRVPGIDG-KAKMSKSLGN-TIGLLEPEESIWQKIQH-LPDDPQRIRL--S-DPGDPERTILFTY  243 (337)
T ss_dssp             SSCCCCCEEECCTTSCCCBCTTS-SSBCCTTTTC-CCBSSSCHHHHHHHHHT-CCCCC----------------CHHHHH
T ss_pred             CcccCCCeeecccccccccCCCC-ccccCCCCCC-eeeCcCCHHHHHHHHHh-CCCCCccccc--c-CCCCCchhhHHHH
Confidence               477877664   89999999 6899999997 99999999999999999 9999976543  3 4667999999999


Q ss_pred             HhhhcCChHhHHHHHHHHhcCCCChHHHHHHHHHHHHHHhHHHHHHHHHHhHH--HHHHHHhcC
Q 027582          153 LSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDE--MVDAFMAVR  214 (221)
Q Consensus       153 l~~~~~~~~~~eel~~~y~~g~~~~~~lK~~lae~l~~~l~pire~~~~~~~~--~l~~il~~~  214 (221)
                      +++|+ ..+++++|+++|.+|+++++++|+.||+.|+++|+|+|++|+++++|  +|+++|..+
T Consensus       244 ~~~~t-~~~~i~~l~~~~~~g~~~~~~~K~~La~~i~~~l~p~re~~~~~~~~~~~l~~il~~G  306 (337)
T 2el7_A          244 LSYFA-PKDLVEALKEEYRKAGVGTYVVKRILFDHLMEALRPIRERAEALKKDPDYVMDALLEG  306 (337)
T ss_dssp             HHHHS-CHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred             HHHcC-ChHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHcCHHHHHHHHHHH
Confidence            99995 33599999999999889999999999999999999999999999987  899999765

>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A {Plasmodium falciparum}

Probab=100.00  E-value=1.2e-45  Score=334.63  Aligned_cols=191  Identities=19%  Similarity=0.278  Sum_probs=162.3

Q ss_pred             cccccccHHHHHHh---hCCC--CCCcccccchhhhhccCCCCCCCCcccccCCCCcccccCCCCchHHHHHHHHHHHHh
Q 027582            3 KVAKCVTYNKVVGI---FGFT--GEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRI   77 (221)
Q Consensus         3 ~l~r~~t~k~~~~~---~g~~--~~~~~g~l~YP~lqaa~~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~~laR~ia~~~   77 (221)
                      ++++++|++++.+.   .++.  +++++|+|+||+||||        ||+.|++|   +||||.||++|+++||++|+||
T Consensus       156 ~i~~~~tv~rm~~~~~~~~r~~~~~~~~g~f~YPlLQaa--------Dil~l~ad---~vpgG~DQ~~~l~l~Rdla~r~  224 (373)
T 3vgj_A          156 DISRSFNINRMKRCLKIMGRSEGEENYCSQILYPCMQCA--------DIFFLNVD---ICQLGIDQRKVNMLAREYCDIK  224 (373)
T ss_dssp             HHHTTSBHHHHHTTGGGGTCCTTSCCBTHHHHHHHHHHH--------HHHHTTCS---EECCBGGGHHHHHHHHHHHHHH
T ss_pred             HHHccCcHHHHHhhhHHHhhhccCCCChHHHHHHHHHHh--------cccccCCc---EEEcchhhHHHHHHHHHHHHHh
Confidence            46788899999874   3443  4689999999999999        99999996   6999999999999999999999


Q ss_pred             CCC-CccccccCcccCCCCCCCCcCCCCCCCceecCCCHHHHHHHHhhccccCCcchhhhhhhcCCCccchh----HHHH
Q 027582           78 GYH-KPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDI----PVKY  152 (221)
Q Consensus        78 n~~-~p~~l~~~~lp~L~g~~~KMSkS~~~s~I~L~D~p~~I~~KI~k~A~td~~~~~~~~~~~~~~p~v~~----~~~~  152 (221)
                      |+. +|.++++++||||+++++|||||+++|+|+|+|+|++|++||++ ||||++.       .++||.+++    +|.+
T Consensus       225 ~~~~~~~~l~~p~l~gL~dG~~KMSKS~~~~~I~L~D~p~~i~~KI~k-A~td~~~-------~~~n~~~~~~~~~~f~~  296 (373)
T 3vgj_A          225 KIKKKPVILSHGMLPGLLEGQEKMSKSDENSAIFMDDSESDVNRKIKK-AYCPPNV-------IENNPIYAYAKSIIFPS  296 (373)
T ss_dssp             TCSCCCEEEEBCCCCCSSTTCCSCCSSSTTCCCBTTCCHHHHHHHHHH-SCCCTTC-------CTTCHHHHHHHHTHHHH
T ss_pred             CCCCCceEEeCCeeecCCCCCCCCcCCCCCCeeecCCCHHHHHHHHHh-CcCCCCC-------CCCCcchhhhhhhhhhh
Confidence            985 78888999999994435799999988899999999999999999 9999864       367887753    5666


Q ss_pred             Hhhhc-C---------ChHhHHHHHHHHhcCCCChHHHHHHHHHHHHHHhHHHHHHHHHHhHH--HHHHHHh
Q 027582          153 LSFFL-E---------DDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDE--MVDAFMA  212 (221)
Q Consensus       153 l~~~~-~---------~~~~~eel~~~y~~g~~~~~~lK~~lae~l~~~l~pire~~~~~~~~--~l~~il~  212 (221)
                      +..|. +         +++++++++++|++|+++|++||++||++|+++|+|||++|++..+.  +|+++-.
T Consensus       297 ~~~f~~~~~~~~g~~~~~~~~eel~~~~~~g~l~~~dlK~~lae~i~~~l~Pire~~~~~~~~~~~l~~v~~  368 (373)
T 3vgj_A          297 YNEFNLVRKEKNGGDKTYYTLQELEHDYVNGFIHPLDLKDNVAMYINKLLQPVRDHFQNNIEAKNLLNEIKK  368 (373)
T ss_dssp             HSSEEECCCGGGTCCEEECCHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred             hhhhcccccccccCCcCcccHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhChhHHHHHHHHHh
Confidence            66553 1         13589999999999999999999999999999999999999987654  5666543

>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*

Probab=100.00  E-value=3.9e-44  Score=345.77  Aligned_cols=200  Identities=21%  Similarity=0.315  Sum_probs=169.0

Q ss_pred             cccccccHHHHHHh---hCCCC-CCcccccchhhhhccCCCCCCCCcccccCCCCcccccCCCCchHHHHHHHHHHHHhC
Q 027582            3 KVAKCVTYNKVVGI---FGFTG-EDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIG   78 (221)
Q Consensus         3 ~l~r~~t~k~~~~~---~g~~~-~~~~g~l~YP~lqaa~~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~~laR~ia~~~n   78 (221)
                      ++++.+|++++.++   +|+.+ ++++|+|+||+||||        |||.|++|   +||||.||+||+++||++|+|||
T Consensus       140 ~i~~~~tv~~m~~~~~~~~r~~~~i~~g~f~YPlLQAa--------Dil~~~ad---~vpvG~DQ~~~l~l~Rdla~r~n  208 (690)
T 3p0j_A          140 DIGRQNTIARIKKCCTIMGKTEGTLTAAQVLYPLMQCC--------DIFFLKAD---ICQLGLDQRKVNMLAREYCDLIG  208 (690)
T ss_dssp             HHHHTSCHHHHHTTC-------CCCCCSCSSHHHHHHH--------HHHHTTCS---EECCBGGGHHHHHHHHHHHHHTT
T ss_pred             HHHhhCCHHHHHhhhhhhhhccCCCchhhHhhHHHHHH--------HHHhhCCC---EEeccccHHHHHHHHHHHHHHhC
Confidence            46788999999874   34332 379999999999999        99999995   79999999999999999999999


Q ss_pred             CC-CccccccCcccCCCCCCCCcCCCCCCCceecCCCHHHHHHHHhhccccCCcc-hhhhhhhcCCC---ccchhHHHHH
Q 027582           79 YH-KPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQE-SVELHRKLGAN---LEVDIPVKYL  153 (221)
Q Consensus        79 ~~-~p~~l~~~~lp~L~g~~~KMSkS~~~s~I~L~D~p~~I~~KI~k~A~td~~~-~~~~~~~~~~~---p~v~~~~~~l  153 (221)
                      +. +|.++++++||||+++++|||||++||+|+|+|+|++|++||++ ||||++. +..++.++|++   ++.++++.|+
T Consensus       209 ~~~~p~~l~~~~l~gL~dG~~KMSKS~~~~~I~L~D~p~~i~kKI~~-A~td~~~~~~~~~~d~g~~~~~~~~~~v~~y~  287 (690)
T 3p0j_A          209 RKLKPVILSHHMLAGLKQGQAKMSKSDPDSAIFMEDTEEDVARKIRQ-AYCPRVKQSASAITDDGAPVATDDRNPVLDYF  287 (690)
T ss_dssp             CCCCCEEEEBCCCCCSSTTCSSCBTTBGGGSCBTTCCHHHHHHHHHT-SCCCSSCCCCCCCCTTCCCCCCSSCCHHHHHH
T ss_pred             CCCCceEeecCeeecCCCCCcCCCCCCCCCeeeccCCHHHHHHHHHh-CcCCCcccccccccCCCCcccCCCCchHHHHH
Confidence            85 78888899999994445799999998899999999999999999 9999874 22233455554   6889999999


Q ss_pred             hhhcC------------ChHhHHHHHHHHhcCCCChHHHHHHHHHHHHHHhHHHHHHHHHHhHH--HHHHHHhcC
Q 027582          154 SFFLE------------DDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDE--MVDAFMAVR  214 (221)
Q Consensus       154 ~~~~~------------~~~~~eel~~~y~~g~~~~~~lK~~lae~l~~~l~pire~~~~~~~~--~l~~il~~~  214 (221)
                      .+|..            +++++++++++|++|+++|++||+.|+++|+++|+|||+||+++.++  ++++++.-+
T Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~eel~~~y~~G~l~~~dlK~~lae~i~~~L~Pirer~~~~~~~~~~l~~v~~~~  362 (690)
T 3p0j_A          288 QCVVYARPGAAATIDGTTYATYEDLEQAFVSDEVSEDALKSCLIDEVNALLEPVRQHFASNEEAHELLEAVKSYR  362 (690)
T ss_dssp             HHTTTTSTTCCEEETTEEESSHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHTC
T ss_pred             HHhhcccccccccccCCCcchHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHh
Confidence            98632            24689999999999999999999999999999999999999998765  788887654

>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics; HET: TYR; 2.20A {Pyrococcus horikoshii}

Probab=100.00  E-value=1.4e-43  Score=321.56  Aligned_cols=178  Identities=23%  Similarity=0.402  Sum_probs=155.3

Q ss_pred             ccccccccHHHHHHhh---CCC--CCCcccccchhhhhccCCCCCCCCcccccCCCCcccccCCCCchHHHHHHHHHHHH
Q 027582            2 VKVAKCVTYNKVVGIF---GFT--GEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPR   76 (221)
Q Consensus         2 ~~l~r~~t~k~~~~~~---g~~--~~~~~g~l~YP~lqaa~~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~~laR~ia~~   76 (221)
                      ..+++.+|++++.+..   ++.  ++.++|+|+||+||||        |||.|++|   +||||.||+||+++||++|+|
T Consensus       135 ~~~~~~~~~~~m~~~~~~k~r~~~~~i~~g~f~YP~LQaa--------Dil~~~~~---~vp~G~DQ~~~i~l~rdla~r  203 (375)
T 2cyc_A          135 IDISKNVTLSRVMRSITIMGRQMGEAIDFAKLIYPMMQVA--------DIFYQGVT---IAHAGMDQRKAHVIAIEVAQK  203 (375)
T ss_dssp             HHHHTTSBHHHHHHTGGGGTCCCCTTCBTHHHHHHHHHHH--------HHHHTTCS---EEEEEGGGHHHHHHHHHHGGG
T ss_pred             HHHhceeEHHHHhccchhhhhccCCCCChHHHHHHHHHHH--------HHHHhCCC---eecccchHHHHHHHHHHHHHH
Confidence            3568899999999754   432  3478999999999999        99999995   799999999999999999999


Q ss_pred             hCC--------C-CccccccCcccCCCCC----------------CCCcCCCCCCCceecCCCHHHHHHHHhhccccCCc
Q 027582           77 IGY--------H-KPALIESSFFPALQGE----------------TGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQ  131 (221)
Q Consensus        77 ~n~--------~-~p~~l~~~~lp~L~g~----------------~~KMSkS~~~s~I~L~D~p~~I~~KI~k~A~td~~  131 (221)
                      ||+        . +|.++++++||||+|+                ++|||||+++|+|+|+|+|++|++||++ |+||+.
T Consensus       204 ~n~~~~~~~g~~~~~~~~~~~~l~gL~g~~~~~~~~~~~~~~~~~~~KMSKS~~~~~I~L~d~p~~i~~KI~~-A~t~~~  282 (375)
T 2cyc_A          204 LRYHPIVHEGEKLKPVAVHHHLLLGLQEPPKWPIESEEEFKEIKAQMKMSKSKPYSAVFIHDSPEEIRQKLRK-AFCPAR  282 (375)
T ss_dssp             CSSSCEEETTEEECCEEEEECCCBCSSCCSSSSCCSHHHHHHHHHHHBGGGSCGGGSCBTTCCHHHHHHHHHH-SCCCTT
T ss_pred             hCCcccccccccCccEEeccccccCCCCcccccccchhhhhhhhhhhcccCCCCCCeeccCCCHHHHHHHHHH-hcCCCC
Confidence            998        4 7888889999999996                4799999987899999999999999999 999875


Q ss_pred             chhhhhhhcCCCccchhHHHHHhhhcC-C------------------hHhHHHHHHHHhcCCCChHHHHHHHHHHHHHHh
Q 027582          132 ESVELHRKLGANLEVDIPVKYLSFFLE-D------------------DAELEHIKKEYGAGGMLTGEVKQRLAKVLTELV  192 (221)
Q Consensus       132 ~~~~~~~~~~~~p~v~~~~~~l~~~~~-~------------------~~~~eel~~~y~~g~~~~~~lK~~lae~l~~~l  192 (221)
                      .           ++.+.++.|+++|+. +                  .+++++|+++|.+|+++++++|+.||+.|+++|
T Consensus       283 ~-----------~~~~~v~~~~~~~~f~~~~~~~~i~~~~~~gg~~~~~~~~el~~~~~~g~~~~~~~K~~La~~l~~~l  351 (375)
T 2cyc_A          283 E-----------VRYNPVLDWVEYIIFREEPTEFTVHRPAKFGGDVTYTTFEELKRDFAEGKLHPLDLKNAVAEYLINLL  351 (375)
T ss_dssp             C-----------CSSCHHHHHHHHTTTSSSSCCEEECCCGGGTCCEEESSHHHHHHHHHTTSSCHHHHHHHHHHHHHHHT
T ss_pred             C-----------CCCChHHHHHHHHhcCCCCcceeeecchhccCcCChhHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence            3           334556678877641 1                  457999999999988999999999999999999


Q ss_pred             HHHHHHHHHH
Q 027582          193 ERHQVARAAV  202 (221)
Q Consensus       193 ~pire~~~~~  202 (221)
                      +|+|++|++.
T Consensus       352 ~pir~~~~~~  361 (375)
T 2cyc_A          352 EPIRRYFEKH  361 (375)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHhC
Confidence            9999999965

>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national on protein structural and functional analyses; 2.20A {Aeropyrum pernix}

Probab=100.00  E-value=2.3e-43  Score=319.03  Aligned_cols=176  Identities=27%  Similarity=0.408  Sum_probs=151.1

Q ss_pred             cccccccHHHHHHhh---CCC---CCCcccccchhhhhccCCCCCCCCcccccCCCCcccccCCCCchHHHHHHHHHHHH
Q 027582            3 KVAKCVTYNKVVGIF---GFT---GEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPR   76 (221)
Q Consensus         3 ~l~r~~t~k~~~~~~---g~~---~~~~~g~l~YP~lqaa~~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~~laR~ia~~   76 (221)
                      +|++.+|++++.+..   ++.   +++++|+|+||+||||        ||+.|++|   +||||.||++|+++||++|+|
T Consensus       132 ~l~~~~t~~~l~r~~~~k~r~~~~~~i~~g~~~YP~LQaa--------Dil~~~~~---~v~~G~DQ~~~~~l~rdla~r  200 (364)
T 2cya_A          132 RVAKRASLARVRRALTIMGRRAEEAEVDASKLIYPLMQVS--------DIFYMDLD---IALGGMDQRKAHMLARDVAEK  200 (364)
T ss_dssp             HHHHTSCHHHHHTTC------CCGGGSCTHHHHHHHHHHH--------HHHHTTCS---EEEEEGGGHHHHHHHHHHHTT
T ss_pred             HHHCcCcHHHHHcCchhhhhhcCCCCccchhhhhHHHHHh--------hHHhcCCC---EEeccchHHHHHHHHHHHHHH
Confidence            477788888887642   322   2367999999999999        99999995   799999999999999999999


Q ss_pred             hCCCCccccccCcccCCCC---------------CCCCcCCCCCCCceecCCCHHHHHHHHhhccccCCcchhhhhhhcC
Q 027582           77 IGYHKPALIESSFFPALQG---------------ETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLG  141 (221)
Q Consensus        77 ~n~~~p~~l~~~~lp~L~g---------------~~~KMSkS~~~s~I~L~D~p~~I~~KI~k~A~td~~~~~~~~~~~~  141 (221)
                      ||+++|.++++++||||+|               +++|||||+++|+|+|+|+|++|++||++ ||||+..+        
T Consensus       201 ~~~~~p~~l~~~ll~~l~g~~~~~~~~~~~~~~~~g~KMSKS~~~~~I~L~d~p~~i~~Ki~~-a~td~~~~--------  271 (364)
T 2cya_A          201 LGRKKPVAIHTPIISSLQGPGRMEASQGEIDDVLAEVKMSKSKPETAVFVVDSDDDIRRKIRK-AYCPAKQV--------  271 (364)
T ss_dssp             TTCCCCEEEEECCCBCSSCC----------------CBCCSSSGGGSCBTTCCHHHHHHHHHT-SCCCTTCC--------
T ss_pred             cCCCCceeeccceeeCCCcccccccccccccccccccccCCCCCCCEeeccCCHHHHHHHHHh-CcCCCCCC--------
Confidence            9999999999999999997               45899999888899999999999999999 99998643        


Q ss_pred             CCccchhHHHHHhhhcC-------------------ChHhHHHHHHHHhcCCCChHHHHHHHHHHHHHHhHHHHHHHHH
Q 027582          142 ANLEVDIPVKYLSFFLE-------------------DDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAA  201 (221)
Q Consensus       142 ~~p~v~~~~~~l~~~~~-------------------~~~~~eel~~~y~~g~~~~~~lK~~lae~l~~~l~pire~~~~  201 (221)
                         +.+.++.|+++|+.                   +.+++++|+++|.+|+++++++|+.||++|+++|+|+|++|++
T Consensus       272 ---~~~~v~~~~~~~~f~~~~~~~~i~r~~~~G~~~~~~~~~el~~~~~~g~~~~~~lK~~la~~l~~~l~pir~~~~~  347 (364)
T 2cya_A          272 ---QGNPVLEIARYILFARDGFTLRVDRPAKYGGPVEYTSYEELERDYTDGRLHPLDLKNAVAESLIEVVRPIRGAVLG  347 (364)
T ss_dssp             ---TTCHHHHHHHHTTTTSTTCCEECC--------CEESSHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             ---CCCcHHHHHHHHhcccccCceeeeccccccCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence               23446778877651                   2348999999999998999999999999999999999999995

>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus}

Probab=100.00  E-value=4.6e-43  Score=315.36  Aligned_cols=179  Identities=20%  Similarity=0.324  Sum_probs=139.4

Q ss_pred             cccccccHHHHHH---hhCCC--CCCcccccchhhhhccCCCCCCCCccccc---CCCCcccccCCCCchHHHHHHHHHH
Q 027582            3 KVAKCVTYNKVVG---IFGFT--GEDHIGKVSFPPVQAVPSFPSSFPHLFSG---KDHLRCLIPCAIDQDPYFRMTRDVA   74 (221)
Q Consensus         3 ~l~r~~t~k~~~~---~~g~~--~~~~~g~l~YP~lqaa~~~~~~~~Dil~~---~ad~~~~vpvG~DQ~~h~~laR~ia   74 (221)
                      .+++.++++++.+   ..++.  ++.++|+|+||+||||        ||+.+   ++|   +||||.||++|++++|++|
T Consensus       139 ~v~~~~~~~~m~~~~~~~~r~~~~~i~~g~f~YP~lQaa--------Dil~~~~~~~~---~~~~G~DQ~~~i~l~Rdia  207 (348)
T 2j5b_A          139 DIAEFSTISRVKRCCQIMGRNESDCLKASQIFYPCMQAA--------DVFELVPEGID---ICQLGIDQRKVNMLAIEYA  207 (348)
T ss_dssp             HHHHHHHHHHHTC-----------------CCHHHHHHH--------HHHHSSTTCCS---EECCBGGGHHHHHHHHHHH
T ss_pred             HHHhheeHHHHHhhhhhhhhhccCCcChHHHhhHHHHHH--------HHHHHhcCCCc---EEEeccChHHHHHHHHHHH
Confidence            4566777777765   23332  3579999999999999        99999   884   7999999999999999999


Q ss_pred             HHhCCCCccccccCcccCCCCCCCCcCCCCCCCceecCCCHHHHHHHHhhccccCCcchhhhhhhcCCCccchh----HH
Q 027582           75 PRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDI----PV  150 (221)
Q Consensus        75 ~~~n~~~p~~l~~~~lp~L~g~~~KMSkS~~~s~I~L~D~p~~I~~KI~k~A~td~~~~~~~~~~~~~~p~v~~----~~  150 (221)
                      +|||+..|.++++++||||+|+++|||||+++|+|+|+|+|++|++||++ |+||+..       .+ ||.+..    ++
T Consensus       208 ~r~~~~~p~~~~~~~l~gL~dg~~KMSKS~~~~~I~L~d~p~~i~kKI~k-a~td~~~-------~~-~~~~~~~~~~~~  278 (348)
T 2j5b_A          208 NDRGLKIPISLSHHMLMSLSGPKKKMSKSDPQGAIFMDDTEQEVSEKISR-AYCTDET-------FD-NPIFEYIKYLLL  278 (348)
T ss_dssp             HHTTCCCCEEEEBCCCCCTTCSSCCCSTTCGGGSCBTTCCHHHHHHHHHH-SCCCSSS-------TT-CHHHHHHHHTHH
T ss_pred             HHhCCCCceeecCccccCCCCcccccccCCCCCeEeecCCHHHHHHHHhc-ccCCCCC-------CC-CchHhHHHHhhh
Confidence            99999999998899999997666899999987899999999999999999 9999863       13 443321    12


Q ss_pred             HHHhhhc---CChHhHHHHHHHHhcCCCChHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 027582          151 KYLSFFL---EDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVT  203 (221)
Q Consensus       151 ~~l~~~~---~~~~~~eel~~~y~~g~~~~~~lK~~lae~l~~~l~pire~~~~~~  203 (221)
                      .+++.|+   .+.+++++|+++|+ | ++++++|+.||++|+++|+|||++|++..
T Consensus       279 ~~~~~~~i~~~~~~~~~el~~~~~-~-~~~~~~K~~la~~l~~~l~pir~~~~~~~  332 (348)
T 2j5b_A          279 RWFGTLNLCGKIYTDIESIQEDFS-S-MNKRELKTDVANYINTIIDLVREHFKKPE  332 (348)
T ss_dssp             HHHSCEEETTEEESSHHHHHHHHT-T-SCHHHHHHHHHHHHHHHHHHHHHHTTSGG
T ss_pred             hhhcccccccCCcchHHHHHHHHc-c-cCHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            2222110   13467999999999 5 89999999999999999999999998763

>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus}

Probab=100.00  E-value=6.8e-41  Score=298.39  Aligned_cols=173  Identities=23%  Similarity=0.364  Sum_probs=152.3

Q ss_pred             cccccccHHHHHHhh---CCC-CCCcccccchhhhhccCCCCCCCCcccccCCCCcccccCCCCchHHHHHHHHHHHHhC
Q 027582            3 KVAKCVTYNKVVGIF---GFT-GEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIG   78 (221)
Q Consensus         3 ~l~r~~t~k~~~~~~---g~~-~~~~~g~l~YP~lqaa~~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~~laR~ia~~~n   78 (221)
                      .+++.+|++++.+..   ++. ++.++|+|+||+||||        ||+.++++   +||||.||++|++++|++|++||
T Consensus       127 ~l~~~~t~~~l~~~~~~~~~~~~~~~~g~~~YP~lqaa--------D~l~~~~~---~v~~G~DQ~~~~~l~rdla~~~~  195 (323)
T 2cyb_A          127 KMARITTLNRARRSMDEVSRRKEDPMVSQMIYPLMQAL--------DIAHLGVD---LAVGGIDQRKIHMLARENLPRLG  195 (323)
T ss_dssp             HHHHHSBHHHHHHHTTTTCSCSSSCBTHHHHHHHHHHH--------HHHHTTCS---EEEEEGGGHHHHHHHHHHGGGGT
T ss_pred             HHhCccCHHHHhccchhhccccCCCCchhhhhHHHHHH--------HHHhcCCC---EEEechhhHHHHHHHHHHHHhcC
Confidence            467889999998864   432 3469999999999999        99999994   79999999999999999999999


Q ss_pred             CCCccccccCcccCCCCCCCCcCCCCCCCceecCCCHHHHHHHHhhccccCCcchhhhhhhcCCCccchhHHHHHhhhc-
Q 027582           79 YHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFL-  157 (221)
Q Consensus        79 ~~~p~~l~~~~lp~L~g~~~KMSkS~~~s~I~L~D~p~~I~~KI~k~A~td~~~~~~~~~~~~~~p~v~~~~~~l~~~~-  157 (221)
                      +++|..+++++||+|+|  +||||| ++|+|+|+|+|++|++||++ |+||++.           ++.++++.|+++|. 
T Consensus       196 ~~~p~~l~~pll~~l~G--~KMSKS-~~n~I~l~d~p~~i~~Ki~~-a~td~~~-----------~~~~~~~~~~~~~~~  260 (323)
T 2cyb_A          196 YSSPVCLHTPILVGLDG--QKMSSS-KGNYISVRDPPEEVERKIRK-AYCPAGV-----------VEENPILDIAKYHIL  260 (323)
T ss_dssp             CCCCEEEEECCCBCTTS--SBCCTT-TTCSCBTTCCHHHHHHHHHT-SCCCTTC-----------CTTCHHHHHHHHTHH
T ss_pred             CCCceEEecCcccCCCC--CcccCC-cCceeCCCCCHHHHHHHHHh-cCCCCCC-----------CCcChHHHHHHHHhc
Confidence            99999999999999998  799999 56799999999999999999 9998753           33467788888874 


Q ss_pred             ---------------C--ChHhHHHHHHHHhcCCCChHHHHHHHHHHHHHHhHHHHHHHHH
Q 027582          158 ---------------E--DDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAA  201 (221)
Q Consensus       158 ---------------~--~~~~~eel~~~y~~g~~~~~~lK~~lae~l~~~l~pire~~~~  201 (221)
                                     .  +.+++++++++|++|+++|++||+.||++|+++|+|||+||++
T Consensus       261 p~~~~~~i~~~~~~G~~~~~~~~~~l~~~~~~g~~~~~~~K~~la~~i~~~l~pir~~~~~  321 (323)
T 2cyb_A          261 PRFGKIVVERDAKFGGDVEYASFEELAEDFKSGQLHPLDLKIAVAKYLNMLLEDARKRLGV  321 (323)
T ss_dssp             HHHSCEEECCCGGGTCCEEESSHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             cccCceeEechhhcCCCCCcccHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence                           1  2458999999999999999999999999999999999999975

>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognit domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A*

Probab=100.00  E-value=4.9e-41  Score=304.54  Aligned_cols=177  Identities=21%  Similarity=0.272  Sum_probs=144.3

Q ss_pred             cccccccHHHHHHh----hCCCCCCcccccchhhhhccCCCCCCCCcccccCCCCcccccCCCCchHHHHHHHHHHHHhC
Q 027582            3 KVAKCVTYNKVVGI----FGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIG   78 (221)
Q Consensus         3 ~l~r~~t~k~~~~~----~g~~~~~~~g~l~YP~lqaa~~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~~laR~ia~~~n   78 (221)
                      ++++.+|+.++++.    .++.++.++|+|+||+||||        ||+.|++   ++||||.||++|++++|+++++||
T Consensus       135 ~l~~~~t~~~~~~~~~~v~~~~~~~~~g~~~YP~lQaa--------Dil~~~a---~~v~~G~DQ~~~~~l~rdl~~r~~  203 (372)
T 1n3l_A          135 RLSSVVTQHDSKKAGAEVVKQVEHPLLSGLLYPGLQAL--------DEEYLKV---DAQFGGIDQRKIFTFAEKYLPALG  203 (372)
T ss_dssp             HHHTTSCHHHHHHHTTTTSCCCSSCCHHHHHHHHHHHH--------HHHHTTC---SEEEEEGGGHHHHHHHHHHGGGGT
T ss_pred             HHHhhCcHHHHHhchhhhhcccCCCcceeeecchHhhc--------cHHHhcC---CEEEcChhHHHHHHHHHHHHHHcC
Confidence            46777888888874    34456789999999999999        9999999   479999999999999999999999


Q ss_pred             CCCccccccCcccCCCCCCCCcCCCCCCCceecCCCHHHHHHHHhhccccCCcchhhhhhhcCCCccc----hhHHHHHh
Q 027582           79 YHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEV----DIPVKYLS  154 (221)
Q Consensus        79 ~~~p~~l~~~~lp~L~g~~~KMSkS~~~s~I~L~D~p~~I~~KI~k~A~td~~~~~~~~~~~~~~p~v----~~~~~~l~  154 (221)
                      +++|..+++++||||+|  +|||||++|++|+|+|+|++|++||++ ||||+..+       +.++..    .++|.+++
T Consensus       204 ~~~p~~l~~pll~gldG--~KMSKS~~ns~I~L~d~p~~i~kKi~~-A~td~~~~-------~d~~v~~~lk~~l~~~~~  273 (372)
T 1n3l_A          204 YSKRVHLMNPMVPGLTG--SKMSSSEEESKIDLLDRKEDVKKKLKK-AFCEPGNV-------ENNGVLSFIKHVLFPLKS  273 (372)
T ss_dssp             CCCCEEEEECCCCCSSC--C-------CCSCBTTCCHHHHHHHHHT-CCCCTTCC-------SSCHHHHHHHHTTGGGTT
T ss_pred             CCCCEEEecCccCCCCc--ccccCCCCCCeEeccCCHHHHHHHHHH-ccCCCCCC-------CcccHHHHHHHhhhhhhc
Confidence            99999999999999998  699999998899999999999999999 99998642       223221    12333333


Q ss_pred             hhcC----------ChHhHHHHHHHHhcCCCChHHHHHHHHHHHHHHhHHHHHHHH
Q 027582          155 FFLE----------DDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARA  200 (221)
Q Consensus       155 ~~~~----------~~~~~eel~~~y~~g~~~~~~lK~~lae~l~~~l~pire~~~  200 (221)
                      .|+.          +.+++++|+++|.+|+++++++|+.||+.|+++|+|+|++++
T Consensus       274 ~f~~er~~~~g~~~~~~~i~el~~~~~~g~~~~~~~K~~La~~i~~~l~p~r~~~~  329 (372)
T 1n3l_A          274 EFVILRDEKWGGNKTYTAYVDLEKDFAAEVVHPGDLKNSVEVALNKLLDPIREKFN  329 (372)
T ss_dssp             CEEECCCGGGTCCEEESSHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             ceeecccccccCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhHHHHHhc
Confidence            4541          346899999999998899999999999999999999999998

>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A 3n2y_A* 2hgz_A*

Probab=100.00  E-value=1.3e-40  Score=295.66  Aligned_cols=170  Identities=20%  Similarity=0.246  Sum_probs=149.1

Q ss_pred             cccccccHHHHHHhh---CCC-CCCcccccchhhhhccCCCCCCCCcccccCCCCcccccCCCCchHHHHHHHHHHHHhC
Q 027582            3 KVAKCVTYNKVVGIF---GFT-GEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIG   78 (221)
Q Consensus         3 ~l~r~~t~k~~~~~~---g~~-~~~~~g~l~YP~lqaa~~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~~laR~ia~~~n   78 (221)
                      .+++.+|++++.+..   ++. +..++|+|+||+||||        ||+.+++   ++||||.||++|++++|++++   
T Consensus       120 ~l~~~~t~~~l~~~~~~~~~~~~~~~~g~~~YP~LQaa--------Dil~~~~---~~v~~G~DQ~~~~~l~R~i~~---  185 (314)
T 2zp1_A          120 RLALKTTLKRARRSMELIAREDENPKVAEVIYPIMQVN--------TSHYLGV---DVAVGGMEQRKIHMLARELLP---  185 (314)
T ss_dssp             HHHHHSCHHHHHHHTTTTSCCCSSCCTHHHHHHHHHHH--------HHHHHTC---SEEEEEGGGHHHHHHHHHHSS---
T ss_pred             HHHCcCcHHHHhccchhhhhccCCCCchhhhhHHHHHH--------hHHhhCC---CEEEcChhHHHHHHHHHHhcC---
Confidence            478899999998853   332 2249999999999999        9999999   479999999999999999997   


Q ss_pred             CCCccccccCcccCCCCCCCCcCCCCCCCceecCCCHHHHHHHHhhccccCCcchhhhhhhcCCCccchhHHHHHhhhc-
Q 027582           79 YHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFL-  157 (221)
Q Consensus        79 ~~~p~~l~~~~lp~L~g~~~KMSkS~~~s~I~L~D~p~~I~~KI~k~A~td~~~~~~~~~~~~~~p~v~~~~~~l~~~~-  157 (221)
                       ++|.++++++||||+| ++||||| ++|+|+|+|+|++|++||++ |+||++.+           +.++++.|+++|. 
T Consensus       186 -~~~~~~~~~~l~~l~G-~~KMSKS-~~~~I~L~d~~~~i~~KI~~-a~td~~~~-----------~~~~~~~~~~~~~~  250 (314)
T 2zp1_A          186 -KKVVCIHNPVLTGLDG-EGKMSSS-KGNFIAVDDSPEEIRAKIKK-AYCPAGVV-----------EGNPIMEIAKYFLE  250 (314)
T ss_dssp             -SCCEEEEECCCBCTTS-SSBCCTT-TTCSCBTTCCHHHHHHHHHH-SCCCTTCC-----------TTCHHHHHHHHHCC
T ss_pred             -CCcEEeeccccccCCc-ccccCCC-CcceecCCCCHHHHHHHHHh-CCCCCCCC-----------CCCcHHHHHHHHhc
Confidence             6888889999999996 4799999 66799999999999999999 99997642           3577889999885 


Q ss_pred             ------------C--ChHhHHHHHHHHhcCCCChHHHHHHHHHHHHHHhHHHHHHHHH
Q 027582          158 ------------E--DDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAA  201 (221)
Q Consensus       158 ------------~--~~~~~eel~~~y~~g~~~~~~lK~~lae~l~~~l~pire~~~~  201 (221)
                                  .  +..++++|+++|++|+++|+++|+.||+.|+++|+|+|++|+.
T Consensus       251 ~~~~i~r~~k~g~~~~~~~~eei~~~~~~g~~~~~~~K~~la~~i~~~l~p~r~~~~~  308 (314)
T 2zp1_A          251 YPLTIKRPEKFGGDLTVNSYEELESLFKNKELHPMYLKNAVAEELIKILEPIRKRLLE  308 (314)
T ss_dssp             SSEEECCCGGGTCCEEESSHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             CCcceeehhhccCCCCcCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence                        1  3458999999999999999999999999999999999999974

>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.5e-39  Score=296.68  Aligned_cols=191  Identities=24%  Similarity=0.253  Sum_probs=145.3

Q ss_pred             cccccccHHHHHHhh----CCCCCCcccccchhhhhccCCCCCCCCcccccCCCCcccccCCCCchHHHHHHHHHHHHhC
Q 027582            3 KVAKCVTYNKVVGIF----GFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIG   78 (221)
Q Consensus         3 ~l~r~~t~k~~~~~~----g~~~~~~~g~l~YP~lqaa~~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~~laR~ia~~~n   78 (221)
                      .+++.+|++++.+.-    ++.++.++|+|+||+||||        ||+.|+++   +||+|.||++|++++|+++++||
T Consensus       139 ~l~~~~t~~~l~r~~~~~~r~~~~~~~g~~~YP~lQaa--------D~l~~~~~---~v~~G~DQ~~~~~l~rdl~~r~~  207 (394)
T 2dlc_X          139 RLSNIVSQNDAKRAGADVVKQVANPLLSGLIYPLMQAL--------DEQFLDVD---CQFGGVDQRKIFVLAEENLPSLG  207 (394)
T ss_dssp             HHHTTSCHHHHHHHTTTTSCCCSSCCTHHHHHHHHHHH--------HHHHTTCS---EEEEEGGGHHHHHHHHHHGGGGT
T ss_pred             HHhCcCcHHHHhcccHhhhcccCCccceeeechhHhhc--------cHhhhCCC---EEecCccHHHHHHHHHHHHHHcC
Confidence            467788998888752    3345689999999999999        99999995   79999999999999999999999


Q ss_pred             CCCccccccCcccCCC-CCCCCcCCCCCCCceecCCCHHHHHHHHhhccccCCcchhh---hhh---------hcCCCcc
Q 027582           79 YHKPALIESSFFPALQ-GETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVE---LHR---------KLGANLE  145 (221)
Q Consensus        79 ~~~p~~l~~~~lp~L~-g~~~KMSkS~~~s~I~L~D~p~~I~~KI~k~A~td~~~~~~---~~~---------~~~~~p~  145 (221)
                      +++|..+++++||||+ |  +|||||++|++|+|+|+|++|++||++ |+||+..+..   ..+         ++...++
T Consensus       208 ~~~p~~l~~pll~gl~~G--~KMSKS~~ns~I~L~D~p~~i~kKI~k-a~Td~~~~~d~~v~~y~k~~~~p~~~~~~~~g  284 (394)
T 2dlc_X          208 YKKRAHLMNPMVPGLAQG--GKMSASDPNSKIDLLEEPKQVKKKINS-AFCSPGNVEENGLLSFVQYVIAPIQELKFGTN  284 (394)
T ss_dssp             CCCCEEEEECCCCCCC------------CCSCBTTCCHHHHHHHHHH-SCCCTTCCSSCHHHHHHHHTHHHHHHTSSSTT
T ss_pred             CCCCEEEecccccCCCCC--CcCCCCCCCCEEeccCCHHHHHHHHHH-hcCCCCCCCcchHHHHHHhhhcchhhhcccCC
Confidence            9999999999999999 5  799999998889999999999999999 9999864310   000         1111111


Q ss_pred             chhHHHH------HhhhcCChHhHHHHHHHHhcCCCChHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHh
Q 027582          146 VDIPVKY------LSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMA  212 (221)
Q Consensus       146 v~~~~~~------l~~~~~~~~~~eel~~~y~~g~~~~~~lK~~lae~l~~~l~pire~~~~~~~~~l~~il~  212 (221)
                      +.+ |.+      +.++  +.+++++|+++|.+|+++++++|+.||++|+++|+|+|++++.-.  .+++++.
T Consensus       285 ~~~-~~i~~~~~~~~~~--~~~~i~el~~~~~~g~~~~~~~K~~La~~i~~~l~p~r~~~~~~~--~~~~~~~  352 (394)
T 2dlc_X          285 HFE-FFIDRPEKFGGPI--TYKSFEEMKLAFKEEKLSPPDLKIGVADAINELLEPIRQEFANNK--EFQEASE  352 (394)
T ss_dssp             CCC-EEECCCGGGSCCE--EESSHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHCH--HHHHHHH
T ss_pred             Cce-EEEeccccccCcC--CHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhHHHHHHHCCH--HHHHHHh
Confidence            111 122      3333  456899999999988899999999999999999999999988432  3555554

>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A*

Probab=100.00  E-value=3.4e-38  Score=290.45  Aligned_cols=174  Identities=18%  Similarity=0.139  Sum_probs=147.6

Q ss_pred             cccccccHHHHHHhhC------CCCCCcccccchhhhhccCCCCCCCCcccccCCCCcccccCCCCchHHHHHHHHHHHH
Q 027582            3 KVAKCVTYNKVVGIFG------FTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPR   76 (221)
Q Consensus         3 ~l~r~~t~k~~~~~~g------~~~~~~~g~l~YP~lqaa~~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~~laR~ia~~   76 (221)
                      ++.+++|++++.++.+      ..+++++|+|+||+||||        ||+.++++   +||||.||++|++++|++|+|
T Consensus       142 ~l~~~~tv~~ml~~~~~k~r~~~~~~is~~ef~YPlLQaa--------Dil~l~~~---l~~gG~DQ~~ni~l~rdlarr  210 (432)
T 1h3f_A          142 RLTSLMTVAQMLEREDFKKRYEAGIPISLHELLYPFAQAY--------DSVAIRAD---VEMGGTDQRFNLLVGREVQRA  210 (432)
T ss_dssp             HHHTTSBHHHHTTSHHHHHHHHTTCCCBGGGGTHHHHHHH--------HHHHHTCS---EEEEEGGGHHHHHHHHHHHHH
T ss_pred             HHhCcCcHHHHHhhhhHHHHhhcCCCCCccccchhhHHhh--------hhhhcCcc---EEEechHHHHHHHHHHHHHHH
Confidence            4566777777654322      135689999999999999        99999984   799999999999999999999


Q ss_pred             hCCCCccccccCcccCCCCCCCCcCCCCCCCceecCCCHHHHHHHHhhccccCCcchhhhhhhcCCCccchhHHHHHhhh
Q 027582           77 IGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFF  156 (221)
Q Consensus        77 ~n~~~p~~l~~~~lp~L~g~~~KMSkS~~~s~I~L~D~p~~I~~KI~k~A~td~~~~~~~~~~~~~~p~v~~~~~~l~~~  156 (221)
                      ||..++.++++|+||||+| ++|||||++| +|+|+|+|++|++||++ +.+                  ++++.|+++|
T Consensus       211 ~~~~~~~~lt~pll~gldG-~~KMSKS~~n-~I~L~dsp~~i~~Ki~~-~~d------------------~~v~~~l~~f  269 (432)
T 1h3f_A          211 YGQSPQVCFLMPLLVGLDG-REKMSKSLDN-YIGLTEPPEAMFKKLMR-VPD------------------PLLPSYFRLL  269 (432)
T ss_dssp             TTCCCCEEEEECCCBCTTS-SSBCCGGGTC-CCBTTSCHHHHHHHHHT-SCG------------------GGHHHHHHHH
T ss_pred             hCCCCceEeecccccCCCC-ccccCcCCCC-eeCCCCCHHHHHHHHhC-CCc------------------cHHHHHHHHc
Confidence            9988888888999999998 3699999986 99999999999999999 732                  3557899998


Q ss_pred             cCChHhHHHHHHHHhcCCCChHHHHHHHHHHHHHHhH----HHHHHHHHHhHH-HHHHHHhc
Q 027582          157 LEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVE----RHQVARAAVTDE-MVDAFMAV  213 (221)
Q Consensus       157 ~~~~~~~eel~~~y~~g~~~~~~lK~~lae~l~~~l~----pire~~~~~~~~-~l~~il~~  213 (221)
                      +  +.+.+|+++.+..   +++++|+.||+.|+++++    |||+||+++++. +|+++|+.
T Consensus       270 t--~~~~eei~~~~~~---~~~~~K~~LA~~i~~~l~~~~~pirerr~~~~~~~~v~~il~~  326 (432)
T 1h3f_A          270 T--DLEEEEIEALLKA---GPVPAHRVLARLLTAAYALPQIPPRIDRAFYESLGYAWEAFGR  326 (432)
T ss_dssp             C--CCCHHHHHHHHHH---CHHHHHHHHHHHHHHHHHSSSCCSCCSHHHHHHTTCCGGGTTC
T ss_pred             C--CCCHHHHHHHHhh---ChHHHHHHHHHHHHHHHhcccchHHHHHHHhhchHHHHHHHhh
Confidence            5  3456666666654   899999999999999999    999999999865 88888876

>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*

Probab=100.00  E-value=3.5e-37  Score=297.36  Aligned_cols=176  Identities=15%  Similarity=0.178  Sum_probs=147.5

Q ss_pred             ccccccccHHHHHHhhCCCCCCcccccchhhhhccCCCCCCCCcccccCCCCcccccCCCCchHHHHHHHHHHHHhCCCC
Q 027582            2 VKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHK   81 (221)
Q Consensus         2 ~~l~r~~t~k~~~~~~g~~~~~~~g~l~YP~lqaa~~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~~laR~ia~~~n~~~   81 (221)
                      .+|++.+|++++++++| .++.++|+|+||+||||        ||+.+++|   ++|||+||++|++|||++|++++  +
T Consensus       481 i~la~~~tl~r~~~~~~-~~~~~i~~~~YPlmQaa--------Di~~l~aD---i~~gG~DQ~~~~~LaRd~~~~~~--~  546 (690)
T 3p0j_A          481 IGIARKNLLSHVEELYG-GEVRNAGQVIAALMRVA--------TALMLSVS---HVISTSLDGHINAFAREYTKERI--D  546 (690)
T ss_dssp             HHHHTTSCHHHHHHHTT-SCCSSHHHHHHHHHHHH--------HHHHTTCS---EEEECSTTTTTTHHHHHHTTTCS--E
T ss_pred             HHHHHhhhHHHHHHHhC-CCCcchHHHHHHHHHHh--------hhhccCCC---EEecccccHHHHHHHHHHHHhcc--C
Confidence            57899999999999986 57789999999999999        99999997   58999999999999999999976  6


Q ss_pred             ccccccCcccCCCCCCCCcCCCCCCCceecCCCHHHHHHHHhhccccCCcchhhhhhhcCCCccchhHHHHHhh----hc
Q 027582           82 PALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSF----FL  157 (221)
Q Consensus        82 p~~l~~~~lp~L~g~~~KMSkS~~~s~I~L~D~p~~I~~KI~k~A~td~~~~~~~~~~~~~~p~v~~~~~~l~~----~~  157 (221)
                      |..++++++|+|+|++.+||||+++|+|+|+|+|++|++||++ |||+++  +      ++||.+..+ .|+.+    |+
T Consensus       547 ~~~~~~~~~P~L~gp~~~~~~~s~~~~I~l~D~~~~i~~KI~k-A~c~p~--v------e~np~l~~~-~~~~~~~~~~~  616 (690)
T 3p0j_A          547 CVQTLEGRIPALHRPGAAPAVLGADDVLYLDDNDMDIRRKIKK-AYSAPN--E------EANPVISVA-QHLLAQHGALS  616 (690)
T ss_dssp             EEECCCCSSCCSSCCCC-------CCSCBTTCCHHHHHHHHHH-SCCCTT--C------SCSHHHHHH-HHHHHHHSCEE
T ss_pred             cccccccccccCCCcccccCCCCCCCeeeccCCHHHHHHHHHH-hcCCCC--C------CCChHHHHH-HHHhccCCceE
Confidence            7778889999999997777788888999999999999999999 999985  2      578866542 33211    11


Q ss_pred             -C---------ChHhHHHHHHHHhcCCCChHHHHHHHHHHHHHHhHHHHHHHHH
Q 027582          158 -E---------DDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAA  201 (221)
Q Consensus       158 -~---------~~~~~eel~~~y~~g~~~~~~lK~~lae~l~~~l~pire~~~~  201 (221)
                       +         +.+++++|+++|.+|++||+|+|++|+++|+++|+|+|++++.
T Consensus       617 i~r~~~~Gg~~~~~~~eel~~~y~~G~lhp~dlK~~la~~l~~~l~p~Re~~~~  670 (690)
T 3p0j_A          617 IERGEANGGNVSYNTPEALVADCGSGALHPADLKAAVLQLLLDRSAQARALLNG  670 (690)
T ss_dssp             ECCCTTTTCCEEESSHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             EechhhhCCCCCccCHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence             0         1368999999999999999999999999999999999999983

>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A*

Probab=100.00  E-value=2.8e-37  Score=275.12  Aligned_cols=164  Identities=16%  Similarity=0.121  Sum_probs=138.1

Q ss_pred             ccccccHHHHHHhhCC-CCCCcccccchhhhhccCCCCCCCCccccc----CCCCcccccCCCCchHHHHHHHHHHHHhC
Q 027582            4 VAKCVTYNKVVGIFGF-TGEDHIGKVSFPPVQAVPSFPSSFPHLFSG----KDHLRCLIPCAIDQDPYFRMTRDVAPRIG   78 (221)
Q Consensus         4 l~r~~t~k~~~~~~g~-~~~~~~g~l~YP~lqaa~~~~~~~~Dil~~----~ad~~~~vpvG~DQ~~h~~laR~ia~~~n   78 (221)
                      ++|+.+...++.++++ .+++++|+|+||+||||        ||+.|    +++   +++||.||+||+++|||+|+|||
T Consensus       148 v~~m~~~~~~k~r~~~~~~~is~g~f~YP~LQaa--------Dil~l~~~~~~~---v~~gG~DQ~~~i~l~rdla~r~n  216 (322)
T 2yxn_A          148 VNQMINKEAVKQRLNREDQGISFTEFSYNLLQGY--------DFACLNKQYGVV---LCIGGSDQWGNITSGIDLTRRLH  216 (322)
T ss_dssp             HHHHTTCHHHHHHHHCTTCCCCHHHHTHHHHHHH--------HHHHHHHHHCEE---EEEECTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHhhhHHHHHHhccCCCCccchhhhHHHHHHH--------HHHHHhccCCce---EEecCchhHHHHHHHHHHHHHhC
Confidence            3444444444444443 34679999999999999        99999    874   57779999999999999999999


Q ss_pred             CCCccccccCcccCCCCCCCCcCCCCCCCceecCC---CHHHHHHHHhhccccCCcchhhhhhhcCCCccchhHHHHHhh
Q 027582           79 YHKPALIESSFFPALQGETGKMSASDPNSAIYVTD---SAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSF  155 (221)
Q Consensus        79 ~~~p~~l~~~~lp~L~g~~~KMSkS~~~s~I~L~D---~p~~I~~KI~k~A~td~~~~~~~~~~~~~~p~v~~~~~~l~~  155 (221)
                      ..++..+..|+|||++|  +|||||++| +|+|+|   +|+++++||++ + +                 .+.+++|+.+
T Consensus       217 ~~~~~~l~~pll~gldG--~KMSKS~~n-~I~L~d~~tsp~~~~~ki~~-~-~-----------------d~~v~~~l~~  274 (322)
T 2yxn_A          217 QNQVFGLTVPLITKADG--TKFGKTEGG-AVWLDPKKTSPYKFYQFWIN-T-A-----------------DADVYRFLKF  274 (322)
T ss_dssp             CCCCEEEECCCCBCTTS--CBTTEETTE-ECBSSTTTSCHHHHHHHHHT-C-C-----------------HHHHHHHHHH
T ss_pred             CCCceeeccCccCCCCc--ccccCCCCC-eeeccCCCCCHHHHHHHHhC-C-C-----------------cccHHHHHHH
Confidence            98888888999999998  699999997 999999   99999999999 5 1                 1334566666


Q ss_pred             hcC-ChHhHHHHHHHHhcCCCChHHHHHHHHHHHHHHhHHHHHHHHH
Q 027582          156 FLE-DDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAA  201 (221)
Q Consensus       156 ~~~-~~~~~eel~~~y~~g~~~~~~lK~~lae~l~~~l~pire~~~~  201 (221)
                      |+. +++++++++++|++|. +++++|+.||+.|+++++|.+++++.
T Consensus       275 ~~~~~~~~i~~l~~~~~~g~-~~~~~K~~La~~i~~~l~~~~~~~~a  320 (322)
T 2yxn_A          275 FTFMSIEEINALEEEDKNSG-KAPRAQYVLAEQVTRLVHGEEGLQAA  320 (322)
T ss_dssp             HCCCCHHHHHHHHHHHHHHS-SCCSHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHcCCHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHhCCHHHHHHh
Confidence            653 7889999999999886 99999999999999999999998764

>2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP-BI ligase, mitochondrion, nucleotide-binding, protein biosynth; HET: YSA; 2.20A {Homo sapiens} PDB: 3zxi_A*

Probab=100.00  E-value=4.1e-37  Score=277.29  Aligned_cols=167  Identities=14%  Similarity=0.113  Sum_probs=127.4

Q ss_pred             ccccccHHHHHHh------hCCCCCCcccccchhhhhccCCCCCCCCccccc----CCCCcccccCCCCchHHHHHHHHH
Q 027582            4 VAKCVTYNKVVGI------FGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSG----KDHLRCLIPCAIDQDPYFRMTRDV   73 (221)
Q Consensus         4 l~r~~t~k~~~~~------~g~~~~~~~g~l~YP~lqaa~~~~~~~~Dil~~----~ad~~~~vpvG~DQ~~h~~laR~i   73 (221)
                      +++.++++++.+.      ....+++++|+|+||+||||        ||+.|    +++   +||||.||+||+++|||+
T Consensus       162 ~~~~~~v~~m~~~~~~k~r~~~~~~is~g~f~YPvLQAa--------Dil~l~~~~~~~---i~p~G~DQ~~~i~l~rdl  230 (356)
T 2pid_A          162 VGGHFRMGTLLSRQSVQLRLKSPEGMSLAEFFYQVLQAY--------DFYYLFQRYGCR---VQLGGSDQLGNIMSGYEF  230 (356)
T ss_dssp             HGGGSBHHHHHHCHHHHHHHTSTTCCBHHHHHHHHHHHH--------HHHHHHHHHCCC---EEEEEGGGHHHHHHHHHH
T ss_pred             HhcceeHHHHhcchHHHHhhccCCCCchHHHHHHHHHHH--------HHHHHhccCCCc---EEeccHHHHHHHHHHHHH
Confidence            3445566655553      22234689999999999999        99999    995   799999999999999999


Q ss_pred             HHHhCCCCccccccCcccCCCCCCCCcCCCCCCCceecCC---CHHHHHHHHhhccccCCcchhhhhhhcCCCccchhHH
Q 027582           74 APRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTD---SAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPV  150 (221)
Q Consensus        74 a~~~n~~~p~~l~~~~lp~L~g~~~KMSkS~~~s~I~L~D---~p~~I~~KI~k~A~td~~~~~~~~~~~~~~p~v~~~~  150 (221)
                      |+|||..+|..++.++||||+|  +|||||.+ |+|+|+|   +|++|++||++ + +              +++|.+++
T Consensus       231 a~r~n~~~~~~l~~pll~~ldG--~KMSKS~~-naI~L~d~~tsp~~i~~ki~~-~-~--------------D~~v~~~l  291 (356)
T 2pid_A          231 INKLTGEDVFGITVPLITSTTG--AKLGKSAG-NAVWLNRDKTSPFELYQFFVR-Q-P--------------DDSVERYL  291 (356)
T ss_dssp             HHHHSSCCCEEEEECCCC----------------CCBSSTTTSCHHHHHHHHHT-C-C--------------HHHHHHHH
T ss_pred             HHHhCCCCccccccccccCCCc--ccccCCCC-CeeeccCCCCCHHHHHHHHHc-C-C--------------chhHHHHH
Confidence            9999998888899999999998  69999975 5999999   99999999999 5 2              12244444


Q ss_pred             HHHhhhcCChHhHHHHHHHHhcCCCChHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 027582          151 KYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVT  203 (221)
Q Consensus       151 ~~l~~~~~~~~~~eel~~~y~~g~~~~~~lK~~lae~l~~~l~pire~~~~~~  203 (221)
                      .++.++  +.+++++|+++|++| .+++++|+.||+.|+++++..++..+...
T Consensus       292 ~~~t~~--~~~~i~~l~~~~~~g-~~~~~~K~~La~~v~~~l~g~~~~~~a~~  341 (356)
T 2pid_A          292 KLFTFL--PLPEIDHIMQLHVKE-PERRGPQKRLAAEVTKLVHGREGLDSAKR  341 (356)
T ss_dssp             HHHCCC--CHHHHHHHHHHHHHC-GGGCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHcC--CchHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence            444433  678999999999988 59999999999999999999998876543

>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis}

Probab=100.00  E-value=1.9e-35  Score=271.78  Aligned_cols=166  Identities=17%  Similarity=0.128  Sum_probs=141.9

Q ss_pred             ccccccHHHHHHhhCC-----CCCCcccccchhhhhccCCCCCCCCccccc----CCCCcccccCCCCchHHHHHHHHHH
Q 027582            4 VAKCVTYNKVVGIFGF-----TGEDHIGKVSFPPVQAVPSFPSSFPHLFSG----KDHLRCLIPCAIDQDPYFRMTRDVA   74 (221)
Q Consensus         4 l~r~~t~k~~~~~~g~-----~~~~~~g~l~YP~lqaa~~~~~~~~Dil~~----~ad~~~~vpvG~DQ~~h~~laR~ia   74 (221)
                      +++.+|++++.+...+     .+++++|+|+||+||||        ||+.|    +++   +||||.||++|++++||+|
T Consensus       140 l~~~~tv~~m~~~~~~k~r~~~~~is~~ef~YPlLQaa--------Dil~l~~~~~~~---i~~gG~DQ~~ni~lgrdla  208 (432)
T 2jan_A          140 IGKHFSVNVMLARDTIRRRLAGEGISYTEFSYLLLQAN--------DYVELHRRHGCT---LQIGGADQWGNIIAGVRLV  208 (432)
T ss_dssp             TGGGCBHHHHHHSHHHHHHTSTTCCBHHHHHHHHHHHH--------HHHHHHHHHCCC---EEEECSTTHHHHHHHHHHH
T ss_pred             HhccCcHHHHhcchHHhhhhcCCCcchHHHHHHHHHHH--------HHHHHhccCCCc---EEeccHHHHHHHHHHHHHH
Confidence            5677777777763221     35689999999999999        99999    985   7999999999999999999


Q ss_pred             HHhCCCCccccccCcccCCCCCCCCcCCCCCCCceecCC---CHHHHHHHHhhccccCCcchhhhhhhcCCCccchhHHH
Q 027582           75 PRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTD---SAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVK  151 (221)
Q Consensus        75 ~~~n~~~p~~l~~~~lp~L~g~~~KMSkS~~~s~I~L~D---~p~~I~~KI~k~A~td~~~~~~~~~~~~~~p~v~~~~~  151 (221)
                      +|||..+|..++.|+|||++|  +|||||++|++|+|+|   +|+++++||++ + +              +++|   ++
T Consensus       209 rr~~~~~~~~l~~plL~~ldG--~KMSKS~~nsaI~L~d~~tsp~~i~qki~~-~-~--------------D~~v---~~  267 (432)
T 2jan_A          209 RQKLGATVHALTVPLVTAADG--TKFGKSTGGGSLWLDPQMTSPYAWYQYFVN-T-A--------------DADV---IR  267 (432)
T ss_dssp             HHHHCCCCEEEECCCCBCTTS--CBTTBCSSSCBCBSSTTTSCHHHHHHHHHT-C-C--------------HHHH---HH
T ss_pred             HHhCCCCccccccccccCCCc--CcCCCCCCCCeEEccCCCCCHHHHHHHHhc-C-C--------------chhH---HH
Confidence            999998888899999999999  6999999988999999   99999999999 5 1              1224   45


Q ss_pred             HHhhhcC-ChHhHHHHHHHHhcCCCChHHHHHHHHHHHHHHhHHHHHHHHHH
Q 027582          152 YLSFFLE-DDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAV  202 (221)
Q Consensus       152 ~l~~~~~-~~~~~eel~~~y~~g~~~~~~lK~~lae~l~~~l~pire~~~~~  202 (221)
                      |+.+|+. +.+++++|+++|.+|. +++++|+.||+.|++++++.++..+..
T Consensus       268 ~l~l~t~~~~~ei~~l~~~~~~g~-~~~~~K~~LA~~v~~~~hg~~~~~~a~  318 (432)
T 2jan_A          268 YLRWFTFLSADELAELEQATAQRP-QQRAAQRRLASELTVLVHGEAATAAVE  318 (432)
T ss_dssp             HHHHHSCCCHHHHHHHHHHHHHCG-GGCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCChHHHHHHHHHHhhcc-CHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence            5555542 6789999999999885 999999999999999999998876654

>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A

Probab=100.00  E-value=1.4e-35  Score=270.19  Aligned_cols=168  Identities=17%  Similarity=0.137  Sum_probs=137.5

Q ss_pred             cccccccHHHHHHhhCCCCCCcccccchhhhhccCCCCCCCCccccc----CCCCcccccCCCCchHHHHHHHHHHHHhC
Q 027582            3 KVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSG----KDHLRCLIPCAIDQDPYFRMTRDVAPRIG   78 (221)
Q Consensus         3 ~l~r~~t~k~~~~~~g~~~~~~~g~l~YP~lqaa~~~~~~~~Dil~~----~ad~~~~vpvG~DQ~~h~~laR~ia~~~n   78 (221)
                      .++||++...++.+++..+++++|+|+||+||||        ||+.+    ++   ++||||.||++|++++||+|+|||
T Consensus       189 ~v~rml~~~~~k~r~~~~~~is~gef~YPlLQAa--------Dil~l~~~~~~---~i~~gG~DQ~~ni~~grdlarrfn  257 (392)
T 1y42_X          189 RIGPMLSRDTVKNKMTQGDGVSFAEFTYPIMQGW--------DWFELFYQQGV---QMQIGGSDQYGNIISGLEVVKAAR  257 (392)
T ss_dssp             CHHHHHSSHHHHHTTSSSSCCCHHHHHHHHHHHH--------HHHHHHHHHCE---EEEEECTTCHHHHHHHHHHHHHHH
T ss_pred             cHHHHhhhhHHHHHhcCCCCcccHHHHHHHHHHH--------HHHHHhccCCc---cEEecCcchHhHHHHHHHHHHHHh
Confidence            3444554444555554456789999999999999        99976    57   479999999999999999999997


Q ss_pred             C-----------------CCccccccCcccCCCCCCCCcCCCCCCCceecCC---CHHHHHHHHhhccccCCcchhhhhh
Q 027582           79 Y-----------------HKPALIESSFFPALQGETGKMSASDPNSAIYVTD---SAKAIKNKINKYAFSGGQESVELHR  138 (221)
Q Consensus        79 ~-----------------~~p~~l~~~~lp~L~g~~~KMSkS~~~s~I~L~D---~p~~I~~KI~k~A~td~~~~~~~~~  138 (221)
                      .                 .+|..+++|+||||+|  +|||||.+| +|+|+|   +|+++++||++ + +          
T Consensus       258 ~~~~~~~~~~~~~p~l~~~~~~~l~~pll~~ldG--~KMSKS~~n-aI~L~d~~tsp~~i~qki~~-~-~----------  322 (392)
T 1y42_X          258 ESEPDPQERKYVTPKTALDECVGFTVPLLTDSSG--AKFGKSAGN-AIWLDPYQTSVFDFYGYFVR-R-S----------  322 (392)
T ss_dssp             HHCCCHHHHHHHSCCSGGGSCEEEECCCCBCTTC--CBTTBCSSS-BCBSSTTTSCHHHHHHHHHT-C-C----------
T ss_pred             hhccccccccccccccccCCccccccccCcCCch--hhccCCCCC-eeeccCCCCCHHHHHHHHHc-C-C----------
Confidence            4                 4567788999999999  699999865 999999   99999999999 5 2          


Q ss_pred             hcCCCccchhHHHHHhhhcCChHhHHHHHHHHhcCCCChHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 027582          139 KLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVT  203 (221)
Q Consensus       139 ~~~~~p~v~~~~~~l~~~~~~~~~~eel~~~y~~g~~~~~~lK~~lae~l~~~l~pire~~~~~~  203 (221)
                          +++|.+++.++.++  +.+++++|+++|.+|. +++++|+.||+.|++++++.++.++...
T Consensus       323 ----D~~v~~~l~~ft~l--~~~ei~~l~~~~~~g~-~~~~~K~~LA~~v~~~lhg~~~~~~a~~  380 (392)
T 1y42_X          323 ----DQEVENLLKLFTFM--PISEITKTMEEHIKDP-SKRVAQHTLAREVVTLVHGKQEASAAED  380 (392)
T ss_dssp             ----TTTHHHHHHHHCCC--CHHHHHHHHHHHHHCG-GGCHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred             ----chhHHHHHHHHHhC--ChhHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence                23454444444433  6889999999999885 9999999999999999999999877643

>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*

Probab=100.00  E-value=1.3e-34  Score=265.92  Aligned_cols=165  Identities=16%  Similarity=0.195  Sum_probs=141.6

Q ss_pred             ccccccHHHHHHhhCC----CCCCcccccchhhhhccCCCCCCCCccccc----CCCCcccccCCCCchHHHHHHHHHHH
Q 027582            4 VAKCVTYNKVVGIFGF----TGEDHIGKVSFPPVQAVPSFPSSFPHLFSG----KDHLRCLIPCAIDQDPYFRMTRDVAP   75 (221)
Q Consensus         4 l~r~~t~k~~~~~~g~----~~~~~~g~l~YP~lqaa~~~~~~~~Dil~~----~ad~~~~vpvG~DQ~~h~~laR~ia~   75 (221)
                      +++++|++++.+...+    .+++++|+|+||+||||        ||+.+    +++   +||||.||++|++++||+|+
T Consensus       140 ~~~~~tv~~m~~~~~~k~r~~~~is~~ef~YplLQaa--------D~l~l~~~~~~~---i~~gG~DQ~~ni~~grdla~  208 (420)
T 1jil_A          140 YGKHVGVNYMLGKDSIQSRLEHGISYTEFTYTILQAI--------DFGHLNRELNCK---IQVGGSDQWGNITSGIELMR  208 (420)
T ss_dssp             TGGGCCHHHHHTCGGGHHHHTTTCCHHHHHHHHHHHH--------HHHHHHHHHCEE---EEEEEGGGHHHHHHHHHHHH
T ss_pred             HhccccHHHHhcchhhhhhccCCcchHHHHHHHHHHH--------HHHHHhccCCCc---EEeccHHHHHHHHHHHHHHH
Confidence            5678888888775433    45689999999999999        99999    884   79999999999999999999


Q ss_pred             Hh-CCCCccccccCcccCCCCCCCCcCCCCCCCceecCC---CHHHHHHHHhhccccCCcchhhhhhhcCCCccchhHHH
Q 027582           76 RI-GYHKPALIESSFFPALQGETGKMSASDPNSAIYVTD---SAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVK  151 (221)
Q Consensus        76 ~~-n~~~p~~l~~~~lp~L~g~~~KMSkS~~~s~I~L~D---~p~~I~~KI~k~A~td~~~~~~~~~~~~~~p~v~~~~~  151 (221)
                      || |..+|..+++|+|||++|  +|||||++| +|+|+|   +|+++++||++ + +              ++++   ++
T Consensus       209 r~~~~~~~~~l~~pll~~ldG--~KMSKS~~n-aI~L~d~~tsp~~i~~ki~~-~-~--------------D~~v---~~  266 (420)
T 1jil_A          209 RMYGQTDAYGLTIPLVTKSDG--KKFGKSESG-AVWLDAEKTSPYEFYQFWIN-Q-S--------------DEDV---IK  266 (420)
T ss_dssp             HHHCCCCCEEEEECCCBCTTS--CBTTBCSSS-BCBSSTTTSCHHHHHHHHHT-C-C--------------HHHH---HH
T ss_pred             HhcCCCCeeEeecccccCCcc--ccccCCCCC-eEecCCCCCCHHHHHHHHhc-C-C--------------chhH---HH
Confidence            99 988888899999999999  699999975 999999   99999999999 5 1              1223   45


Q ss_pred             HHhhhcC-ChHhHHHHHHHHhcCCCChHHHHHHHHHHHHHHhHHHHHHHHHH
Q 027582          152 YLSFFLE-DDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAV  202 (221)
Q Consensus       152 ~l~~~~~-~~~~~eel~~~y~~g~~~~~~lK~~lae~l~~~l~pire~~~~~  202 (221)
                      |+.+|+. +.+++++++++|.+|. +++++|+.||+.|++++++.++..+..
T Consensus       267 ~l~~~t~~~~~ei~~l~~~~~~g~-~~~~~K~~La~~v~~~~hg~~~~~~a~  317 (420)
T 1jil_A          267 FLKYFTFLGKEEIDRLEQSKNEAP-HLREAQKTLAEEVTKFIHGEDALNDAI  317 (420)
T ss_dssp             HHHHHCCCCHHHHHHHHHHHHHCG-GGCHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence            5555542 6789999999999885 999999999999999999988876643

>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A

Probab=100.00  E-value=1.1e-34  Score=265.99  Aligned_cols=165  Identities=17%  Similarity=0.207  Sum_probs=136.8

Q ss_pred             ccccccHHHHHHhhCC----CCCCcccccchhhhhccCCCCCCCCccccc----CCCCcccccCCCCchHHHHHHHHHHH
Q 027582            4 VAKCVTYNKVVGIFGF----TGEDHIGKVSFPPVQAVPSFPSSFPHLFSG----KDHLRCLIPCAIDQDPYFRMTRDVAP   75 (221)
Q Consensus         4 l~r~~t~k~~~~~~g~----~~~~~~g~l~YP~lqaa~~~~~~~~Dil~~----~ad~~~~vpvG~DQ~~h~~laR~ia~   75 (221)
                      +.+++|++++.+..++    .+++++|+|+||+||||        ||+.+    +++   +||||.||++|++++||+|+
T Consensus       139 ~~~~~tv~rm~~~~~~k~r~~~~is~~ef~YPlLQaa--------Dil~l~~~~~~~---i~~gG~DQ~~ni~lgrdlar  207 (419)
T 2ts1_A          139 VGKHFSVNYMMAKESVQSRIETGISFTEFSYMMLQAY--------DFLRLYETEGCR---LQIGGSDQWGNITAGLELIR  207 (419)
T ss_dssp             TGGGCCHHHHHTSHHHHTTTTTCCCHHHHHHHHHHHH--------HHHHHHHHHCEE---EEEEEGGGHHHHHHHHHHHH
T ss_pred             HhcccCHHHHhccchhhhccCCCcchHHHHHHHHHHH--------HHHHHhccCCCc---EEeccHHHHHHHHHHHHHHH
Confidence            4566666666553211    45689999999999999        99999    884   79999999999999999999


Q ss_pred             Hh-CCCCccccccCcccCCCCCCCCcCCCCCCCceecCC---CHHHHHHHHhhccccCCcchhhhhhhcCCCccchhHHH
Q 027582           76 RI-GYHKPALIESSFFPALQGETGKMSASDPNSAIYVTD---SAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVK  151 (221)
Q Consensus        76 ~~-n~~~p~~l~~~~lp~L~g~~~KMSkS~~~s~I~L~D---~p~~I~~KI~k~A~td~~~~~~~~~~~~~~p~v~~~~~  151 (221)
                      || |..+|..+++|+|||++|  +|||||.+| +|+|+|   +|+++++||++ + +              ++++   ++
T Consensus       208 r~~~~~~~~~lt~pll~~ldG--~KMSKS~~n-aI~L~d~~tsp~~i~qki~~-~-~--------------D~~v---~~  265 (419)
T 2ts1_A          208 KTKGEARAFGLTIPLVTKADG--TKFGKTESG-TIWLDKEKTSPYEFYQFWIN-T-D--------------DRDV---IR  265 (419)
T ss_dssp             HHHC--CCEEEEECCCCCTTS--CCTTCCSSC-CCBSSTTTSCHHHHHHHHHT-C-C--------------HHHH---HH
T ss_pred             HhcCCCCeeecccccccCCCc--ccccCCCCC-eEecCCCCCCHHHHHHHHhc-C-C--------------chhH---HH
Confidence            99 988888899999999999  699999875 999999   99999999999 5 1              1224   45


Q ss_pred             HHhhhcC-ChHhHHHHHHHHhcCCCChHHHHHHHHHHHHHHhHHHHHHHHHH
Q 027582          152 YLSFFLE-DDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAV  202 (221)
Q Consensus       152 ~l~~~~~-~~~~~eel~~~y~~g~~~~~~lK~~lae~l~~~l~pire~~~~~  202 (221)
                      |+.+|+. +.+++++++++|.+|. +++++|+.||+.|++++++.++..+..
T Consensus       266 ~l~l~t~~~~~ei~~l~~~~~~g~-~~~~~K~~LA~~v~~~~hg~~~~~~a~  316 (419)
T 2ts1_A          266 YLKYFTFLSKEEIEALEQELREAP-EKRAAQKTLAEEVTKLVHGEEALRQAI  316 (419)
T ss_dssp             HHHHHCCCCHHHHHHHHHHHHHCT-TSCHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence            5555542 6789999999999885 999999999999999999988876654

>2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide-B; HET: GLU; 2.45A {Synechococcus elongatus}

Probab=96.98  E-value=0.00039  Score=64.78  Aligned_cols=68  Identities=16%  Similarity=0.096  Sum_probs=55.6

Q ss_pred             ccccCCCCchHHHHHHHHHHHHhCCCCccccccCcccCCCCCCCCcCCCCCCCcee-cCC---CHHHHHHHHhh
Q 027582           55 CLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIY-VTD---SAKAIKNKINK  124 (221)
Q Consensus        55 ~~vpvG~DQ~~h~~laR~ia~~~n~~~p~~l~~~~lp~L~g~~~KMSkS~~~s~I~-L~D---~p~~I~~KI~k  124 (221)
                      ++|..|.|+..+-..-..+.+.||.+.|...|.++|.+.+|  +|||||+++..|. +.+   .|+.|..-+..
T Consensus       205 thviRG~D~~~~t~~q~~l~~alg~~~P~~~H~plil~~~g--~KLSKr~g~~~l~~~r~~G~~peal~~~l~~  276 (492)
T 2cfo_A          205 TDVIRGEDHIGNTPKQILLYEALGATPPNFAHTPLILNSTG--QKLSKRDGVTSISDFRAMGYLAPALANYMTL  276 (492)
T ss_dssp             SEEEEEGGGTTHHHHHHHHHHHTTCCCCEEEEECCEECSSS--SBCCTTSSCCBHHHHHHTTCCHHHHHHHHHH
T ss_pred             CeEEEchhhhhCHHHHHHHHHHcCCCCceEEEeeeEECCCC--CEecccCCcccHHHHHHCCCCHHHHHHHHHH
Confidence            57889999999998888888999999998888999999998  7999999865432 222   47777777766

>1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A*

Probab=96.79  E-value=0.0014  Score=57.23  Aligned_cols=66  Identities=17%  Similarity=0.117  Sum_probs=39.6

Q ss_pred             ccCCCCchHHHHHHHHHHHHhCCCCccccccCcccCCCCCCCCcCCCCCCCceecCCCHHHHHHHHhh
Q 027582           57 IPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINK  124 (221)
Q Consensus        57 vpvG~DQ~~h~~laR~ia~~~n~~~p~~l~~~~lp~L~g~~~KMSkS~~~s~I~L~D~p~~I~~KI~k  124 (221)
                      |.-|.|+..+...-..+.+.+|.+.|...|.++|.+.+|  +||||+.++..|.-.++..-+..-+..
T Consensus       188 vIrG~D~l~~t~~q~~l~~alG~~~p~~~H~pll~~~~g--~KLSKR~g~~~v~~~~~~~~~~~~l~~  253 (298)
T 1nzj_A          188 IVRGADLIEPTVRQISLYQLFGWKVPDYIHLPLALNPQG--AKLSKQNHAPALPKGDPRPVLIAALQF  253 (298)
T ss_dssp             EEEEGGGHHHHHHHHHHHHHHTCCCCEEEEECBCCC---------------CCCSSCCHHHHHHHHHH
T ss_pred             EEeCccccccHHHHHHHHHHcCCCCCeEEEeeeeECCCC--CcccccCCccChhcCCccHHHHHHHHH
Confidence            344999998887777777999999999989999999988  699999987666655655544444433

>1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A* 1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A* 1g59_A 1gln_A

Probab=96.52  E-value=0.0017  Score=60.06  Aligned_cols=89  Identities=11%  Similarity=0.063  Sum_probs=67.8

Q ss_pred             cccchhhhhccCCCCCCCCcccccCCCCc----------------ccccCCCCchHHHHHHHHHHHHhCCCCccccccCc
Q 027582           26 GKVSFPPVQAVPSFPSSFPHLFSGKDHLR----------------CLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSF   89 (221)
Q Consensus        26 g~l~YP~lqaa~~~~~~~~Dil~~~ad~~----------------~~vpvG~DQ~~h~~laR~ia~~~n~~~p~~l~~~~   89 (221)
                      |.+.+|..+.-        |..++++|..                |+|..|.|+..|...-..+.+.+|.+.|...+.++
T Consensus       164 G~~~~~~~~~~--------D~Vl~R~dg~PtY~~a~vvDD~~~githvirG~D~~~~t~~q~~l~~alg~~~p~~~h~~l  235 (468)
T 1j09_A          164 GVVVYDNQEIP--------DVVLLKSDGYPTYHLANVVDDHLMGVTDVIRAEEWLVSTPIHVLLYRAFGWEAPRFYHMPL  235 (468)
T ss_dssp             EEEEEEGGGSC--------CCEEECTTSCBCHHHHHHHHHHHTTCCEEEEEGGGGGGHHHHHHHHHHHTCCCCEEEEECC
T ss_pred             eeEeecccCCC--------CeEEEecCCCeeehhHHHHHHHHCCCCeEEEChhhhhhHHHHHHHHHHcCCCCCeEEEeee
Confidence            55777776666        8888888631                23333999999999999999999999898888899


Q ss_pred             ccCCCCCCCCcCCCCCCCcee-cCC---CHHHHHHHHhh
Q 027582           90 FPALQGETGKMSASDPNSAIY-VTD---SAKAIKNKINK  124 (221)
Q Consensus        90 lp~L~g~~~KMSkS~~~s~I~-L~D---~p~~I~~KI~k  124 (221)
                      +.+.+|  +||||++++..|. +.+   .|+.|..-+..
T Consensus       236 i~~~~g--~klSKR~g~~~l~~~~~~G~~peal~~~l~~  272 (468)
T 1j09_A          236 LRNPDK--TKISKRKSHTSLDWYKAEGFLPEALRNYLCL  272 (468)
T ss_dssp             CBCTTS--CBCCTTTSCCBHHHHHHTTCCHHHHHHHHHH
T ss_pred             eeCCCC--CccccccchhhHHHHHHCCCCHHHHHHHHHH
Confidence            999988  6999999765432 222   47777777766

>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima}

Probab=96.46  E-value=0.0015  Score=62.21  Aligned_cols=68  Identities=9%  Similarity=0.087  Sum_probs=55.4

Q ss_pred             ccccCCCCchHHHHHHHHHHHHhCCCCccccccCcccCCCCCCCCcCCCCCCCcee-cCC---CHHHHHHHHhh
Q 027582           55 CLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIY-VTD---SAKAIKNKINK  124 (221)
Q Consensus        55 ~~vpvG~DQ~~h~~laR~ia~~~n~~~p~~l~~~~lp~L~g~~~KMSkS~~~s~I~-L~D---~p~~I~~KI~k  124 (221)
                      ++|..|.|+..+...-+.+.+.||.+.|...|.++|.+.+|  +||||++++..|. +.+   .|+.|..-+..
T Consensus       317 thvirG~D~~~~t~~q~~l~~alg~~~P~~~hlpli~~~~g--~KLSKR~g~~~l~~~~~~G~~peal~~~l~~  388 (592)
T 3al0_C          317 SHVFRGEDHLSNTPKQLMIYEAFGWEAPVFMHIPLILGSDR--TPLSKRHGATSVEHFRREGILSRALMNYLAL  388 (592)
T ss_dssp             SBCCEEGGGGGGHHHHHHHHTTTTCCCCBCCEECCCBCTTS--SBCCTTTCSSBHHHHHHTTCCHHHHHHHHTT
T ss_pred             CeEEEchhhHhCHHHHHHHHHHhCCCCCeEEEeeeeeCCCC--CcccccCCcccHHHHHHCCCCHHHHHHHHHH
Confidence            46667999999999999999999999998888899999998  6999998753332 222   57888777766

>3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: GSU; 2.00A {Thermotoga maritima} PDB: 3akz_B*

Probab=96.19  E-value=0.003  Score=58.67  Aligned_cols=68  Identities=9%  Similarity=0.087  Sum_probs=54.7

Q ss_pred             ccccCCCCchHHHHHHHHHHHHhCCCCccccccCcccCCCCCCCCcCCCCCCCcee-cCC---CHHHHHHHHhh
Q 027582           55 CLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIY-VTD---SAKAIKNKINK  124 (221)
Q Consensus        55 ~~vpvG~DQ~~h~~laR~ia~~~n~~~p~~l~~~~lp~L~g~~~KMSkS~~~s~I~-L~D---~p~~I~~KI~k  124 (221)
                      |+|.-|.|+..+...-..+.+.||.+.|...|.++|.+.+|  +||||++++..|. +.+   .|+.|..-+..
T Consensus       213 ThViRG~D~l~~tp~q~~l~~aLG~~~P~f~H~pli~~~~g--~KLSKR~g~~~l~~~r~~G~~peal~n~l~~  284 (488)
T 3afh_A          213 SHVFRGEDHLSNTPKQLMIYEAFGWEAPVFMHIPLILGSDR--TPLSKRHGATSVEHFRREGILSRALMNYLAL  284 (488)
T ss_dssp             SEEEEEGGGGGGHHHHHHHHHHHTCCCCEEEEECCEECTTS--SBCCTTTSCCBHHHHHHHTCCHHHHHHHHHH
T ss_pred             CEEEEchhhhhCHHHHHHHHHHcCCCCCeEEEEeeeeCCCC--CcccCcCCcccHHHHHHCCCCHHHHHHHHHH
Confidence            45556999999999999999999999999889999999988  6999998753332 222   57777777766

>2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA aminoacylation, protein biosynthesis, aminoacyl-tRNA synthetase, ligase; 1.65A {Mycobacterium tuberculosis} PDB: 3pny_A 3pnv_A

Probab=96.03  E-value=0.003  Score=58.87  Aligned_cols=89  Identities=15%  Similarity=0.122  Sum_probs=65.0

Q ss_pred             cccchhhhhccCCCCCCCCcccccCCCCc----------------ccccCCCCchHHHHHHHHHHHHh-----CCCCccc
Q 027582           26 GKVSFPPVQAVPSFPSSFPHLFSGKDHLR----------------CLIPCAIDQDPYFRMTRDVAPRI-----GYHKPAL   84 (221)
Q Consensus        26 g~l~YP~lqaa~~~~~~~~Dil~~~ad~~----------------~~vpvG~DQ~~h~~laR~ia~~~-----n~~~p~~   84 (221)
                      |.+.|+.-+.-        |..++++|..                ++|.-|.|+..+...-+.+.+.|     |.+.|..
T Consensus       173 G~i~~~~~~~~--------D~Vi~R~Dg~ptY~lA~vVDD~~mgithviRG~D~~~~t~~q~~l~~aL~~~g~g~~~P~~  244 (498)
T 2ja2_A          173 GPVTFAAGSVP--------DFALTRASGDPLYTLVNPCDDALMKITHVLRGEDLLPSTPRQLALHQALIRIGVAERIPKF  244 (498)
T ss_dssp             EEEEECTTCSC--------CCBSBCTTSCBCHHHHHHHHHHHTTCCEEEEEGGGGGGHHHHHHHHHHHHHTTSCCCCCEE
T ss_pred             ceEeecccccC--------cceeEccCCCcchhhHHHHHhhhcCCCEEEEChhhhhccHHHHHHHHHHHhhcCCCCCCeE
Confidence            45666655544        8888777630                23334999999999999999999     9999998


Q ss_pred             cccCcccCCCCCCCCcCCCCCCCcee-cCC---CHHHHHHHHhh
Q 027582           85 IESSFFPALQGETGKMSASDPNSAIY-VTD---SAKAIKNKINK  124 (221)
Q Consensus        85 l~~~~lp~L~g~~~KMSkS~~~s~I~-L~D---~p~~I~~KI~k  124 (221)
                      .+.+++.+.+|  +||||++++.+|. +.+   .|+.|..-+..
T Consensus       245 ~h~plil~~~g--~KLSKR~g~~~l~~~r~~G~~peAl~~~l~~  286 (498)
T 2ja2_A          245 AHLPTVLGEGT--KKLSKRDPQSNLFAHRDRGFIPEGLLNYLAL  286 (498)
T ss_dssp             EEECCEECSSS--SBCCTTSGGGBHHHHHHHTCCHHHHHHHHHT
T ss_pred             EEeeeeECCCC--CcccccCCcccHHHHHhCCCCHHHHHHHHHH
Confidence            88999999988  6999998753332 222   47777766665

>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A*

Probab=95.55  E-value=0.0043  Score=57.20  Aligned_cols=65  Identities=15%  Similarity=0.170  Sum_probs=40.2

Q ss_pred             cccCCCCchH-HHHHHHHHHHHhCCCCcc-ccccCcccCCCCCCCCcCCCCCCCceecCC-----CHHHHHHHHhh
Q 027582           56 LIPCAIDQDP-YFRMTRDVAPRIGYHKPA-LIESSFFPALQGETGKMSASDPNSAIYVTD-----SAKAIKNKINK  124 (221)
Q Consensus        56 ~vpvG~DQ~~-h~~laR~ia~~~n~~~p~-~l~~~~lp~L~g~~~KMSkS~~~s~I~L~D-----~p~~I~~KI~k  124 (221)
                      +..+|.||.. |.++--..+..+|.+.|. ++++.+|.. +|  +|||||.+| .|.+.|     .++.++--+..
T Consensus       253 i~~~G~D~~~~H~~~~~a~l~~~g~~~~~~~~~~G~v~~-~G--~KMSKS~GN-~i~~~dli~~~g~DalR~~ll~  324 (497)
T 2csx_A          253 LHLVGKDILRFHTVYWPAFLMSLGYELPKKVFAHGWWTV-EG--KKMSKTLGN-VVDPYEVVQEYGLDEVRYFLLR  324 (497)
T ss_dssp             CEEEEGGGHHHHHTHHHHHHHHHTCCCCSCEEEECCEES-SS--SBCCTTTTC-CCCHHHHHHHHCHHHHHHHHHH
T ss_pred             EEEeecchhHhHHHHHHHHHHHcCCCCCcEEEECcEEEe-CC--ceeCCcCCC-CCCHHHHHHHCCcHHHHHHHHh
Confidence            5689999987 554433333456775565 445666654 66  799999986 776543     34444444443

>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A

Probab=95.34  E-value=0.0056  Score=56.36  Aligned_cols=66  Identities=15%  Similarity=0.017  Sum_probs=40.0

Q ss_pred             cccCCCCchH-HHHHHHHHHHHhCCCCcc-ccccCcccCCCCCCCCcCCCCCCCceecCC-----CHHHHHHHHhh
Q 027582           56 LIPCAIDQDP-YFRMTRDVAPRIGYHKPA-LIESSFFPALQGETGKMSASDPNSAIYVTD-----SAKAIKNKINK  124 (221)
Q Consensus        56 ~vpvG~DQ~~-h~~laR~ia~~~n~~~p~-~l~~~~lp~L~g~~~KMSkS~~~s~I~L~D-----~p~~I~~KI~k  124 (221)
                      +..+|.||.. |..+--..+..+|.+.|. ++++.+|..-+|  +|||||.+| .|.+.|     .++.++--+..
T Consensus       254 i~~~G~D~~~fh~~~~~a~~~~~g~~~~~~v~~~G~v~~~~G--~KMSKS~GN-~i~p~d~i~~~g~DalR~~ll~  326 (500)
T 2d5b_A          254 WHLIGKDILKPHAVFWPTMLKAAGIPMYRHLNVGGFLLGPDG--RKMSKTLGN-VVDPFALLEKYGRDALRYYLLR  326 (500)
T ss_dssp             EEEEEGGGHHHHHTHHHHHHHHHTCCCCSEEEEECCEECTTS--SCCCTTTTC-CCCHHHHHHHHCHHHHHHHHHH
T ss_pred             EEEEeechhhhHHHHHHHHHHHcCCCCCcEEEECceEEeCCC--CcccccCCC-CCCHHHHHHhcCcHHHHHHHHh
Confidence            5689999987 433322223345776565 455677764366  799999986 776543     34445444443

>2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate-T ligase 1, glurs 1, structural genomics, joint center for ST genomics, JCSG; 2.34A {Thermotoga maritima}

Probab=95.03  E-value=0.0094  Score=55.25  Aligned_cols=68  Identities=13%  Similarity=0.053  Sum_probs=53.9

Q ss_pred             ccccCCCCchHHHHHHHHHHHHhCCCCccccccCcccCCCCCCCCcCCCCCCCcee-cCC---CHHHHHHHHhh
Q 027582           55 CLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIY-VTD---SAKAIKNKINK  124 (221)
Q Consensus        55 ~~vpvG~DQ~~h~~laR~ia~~~n~~~p~~l~~~~lp~L~g~~~KMSkS~~~s~I~-L~D---~p~~I~~KI~k  124 (221)
                      ++|..|.||..|...-..+.+.+|.+.|...|.+++.+.+|  +||||++++..|. +.+   .|+.|..-+..
T Consensus       220 thvirG~D~~~~t~~q~~l~~aLG~~~p~~~H~plil~~~G--~KLSKR~g~~~l~~~~~~G~~peal~~~l~~  291 (481)
T 2o5r_A          220 THVIRGDDHLSNTLRQLALYEAFEKAPPVFAHVSTILGPDG--KKLSKRHGATSVEAFRDMGYLPEALVNYLAL  291 (481)
T ss_dssp             SEEEEEGGGHHHHHHHHHHHHHTTCCCCEEEEECCEECTTS--SBCCGGGSCCBHHHHHHHTCCHHHHHHHHHT
T ss_pred             CeEEEChhHHHhHHHHHHHHHHcCCCCCeEEEEeeEECCCC--CcccCcCCcccHHHHHHCCCCHHHHHHHHHH
Confidence            57889999999999999999999999998888888888888  6999998764332 222   46666666655

>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni}

Probab=94.26  E-value=0.0062  Score=56.22  Aligned_cols=57  Identities=23%  Similarity=0.301  Sum_probs=38.1

Q ss_pred             cccCCCCchHHHHHHHHHHHHhCCCCccc--cccCccc-CCCCCCCCcCCCCCCCceecCC
Q 027582           56 LIPCAIDQDPYFRMTRDVAPRIGYHKPAL--IESSFFP-ALQGETGKMSASDPNSAIYVTD  113 (221)
Q Consensus        56 ~vpvG~DQ~~h~~laR~ia~~~n~~~p~~--l~~~~lp-~L~g~~~KMSkS~~~s~I~L~D  113 (221)
                      +-.+|.||..|+.--..+++.+|++.+.+  +.+.++. +-+|...|||||.+| .|.+.|
T Consensus       239 Iyv~G~dq~~~f~~l~~~l~~lG~~~~~~~h~~~g~V~l~~dG~~~KMSKr~Gn-~v~l~d  298 (464)
T 3fnr_A          239 INIWGADHHGYIPRMKAAMEFLGFDSNNLEIILAQMVSLLKDGEPYKMSKRAGN-FILMSD  298 (464)
T ss_dssp             EEEEEGGGGGGHHHHHHHHHTTTCCGGGEEEEEECCEEEEETTEECCC---CCS-SCBHHH
T ss_pred             EEEecCcHHHHHHHHHHHHHHcCCCccceEEEEeeeEEecCCCcccCCcCcCCC-CCCHHH
Confidence            33689999999999999999999865532  3345552 225533599999986 777654

>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*

Probab=93.11  E-value=0.017  Score=53.54  Aligned_cols=53  Identities=19%  Similarity=0.126  Sum_probs=32.1

Q ss_pred             cccCCCCchHH-HHHHHHHHHHhCCCCcc-ccccCcccCCCCCCCCcCCCCCCCceecC
Q 027582           56 LIPCAIDQDPY-FRMTRDVAPRIGYHKPA-LIESSFFPALQGETGKMSASDPNSAIYVT  112 (221)
Q Consensus        56 ~vpvG~DQ~~h-~~laR~ia~~~n~~~p~-~l~~~~lp~L~g~~~KMSkS~~~s~I~L~  112 (221)
                      +..+|.||... ..+-...+...|.+.|. ++.+.+|.. +|  +|||||.+| .|.+.
T Consensus       268 i~~~G~D~~~fh~~~~~a~l~~~g~~~~~~v~~hG~v~~-~G--~KMSKS~GN-~v~p~  322 (524)
T 2x1l_A          268 LHMIGKDIIRFHTVYWPAFLMSAGLPLPKRIFAHGWLLN-RG--EKMSKSIGN-VVDPV  322 (524)
T ss_dssp             EEEEEGGGHHHHHTHHHHHHHHHTCCCCSCEEEECCEEE-CS--CSEETTTEE-SSCHH
T ss_pred             EEEEeechhHhHHHHHHHHHHHCCCCCCcEEEECcEEEe-CC--cccCCcCCC-CCCHH
Confidence            46899999853 22222233345765553 344556554 55  799999986 66653

>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A*

Probab=92.92  E-value=0.029  Score=52.06  Aligned_cols=50  Identities=16%  Similarity=0.070  Sum_probs=30.9

Q ss_pred             cccCCCCchHHH---HHHHHHHHHhCCCCccccc-cCcccCCCCCCCCcCCCCCCCceec
Q 027582           56 LIPCAIDQDPYF---RMTRDVAPRIGYHKPALIE-SSFFPALQGETGKMSASDPNSAIYV  111 (221)
Q Consensus        56 ~vpvG~DQ~~h~---~laR~ia~~~n~~~p~~l~-~~~lp~L~g~~~KMSkS~~~s~I~L  111 (221)
                      +...|.||..++   ..++-++.  |.+.|..+. +.+|- .+|  +|||||.+| .|..
T Consensus       281 ~~~~G~D~~~fh~~~~~a~l~~~--g~~~~~~v~~hg~l~-~~G--~KMSKSlGN-vi~p  334 (542)
T 3u1f_A          281 VHVIGKDILKFHAIYWPAFLLSA--GLPLPKKIVAHGWWT-KDR--KKISKSLGN-VFDP  334 (542)
T ss_dssp             EEEEEGGGHHHHHTHHHHHHHHH--TCCCCSCEEEECCCE-ETT--BCCBTTTTB-CCCH
T ss_pred             EEEecccccccccchhHHHHHhh--cccccceecccccee-cCC--ceeccccCC-CCCh
Confidence            457899997753   33444443  555554443 44543 355  899999986 6653

>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*

Probab=92.88  E-value=0.044  Score=54.53  Aligned_cols=56  Identities=27%  Similarity=0.117  Sum_probs=37.0

Q ss_pred             cCCCCcccccCCCCch---HHHHHHHHHHHHhCCCCc-cccccCcccCCCCCCCCcCCCCCCCceec
Q 027582           49 GKDHLRCLIPCAIDQD---PYFRMTRDVAPRIGYHKP-ALIESSFFPALQGETGKMSASDPNSAIYV  111 (221)
Q Consensus        49 ~~ad~~~~vpvG~DQ~---~h~~laR~ia~~~n~~~p-~~l~~~~lp~L~g~~~KMSkS~~~s~I~L  111 (221)
                      +.+|   +...|.||.   .|-.+....+ -+|...+ .++.+.++...+|  +|||||.+| .|..
T Consensus       547 ~P~D---l~~~G~D~~r~wf~~~l~~s~~-~~g~~Pfk~v~~hG~V~d~~G--~KMSKSlGN-vV~P  606 (917)
T 1ffy_A          547 FPAD---MYLEGSDQYRGWFNSSITTSVA-TRGVSPYKFLLSHGFVMDGEG--KKMSKSLGN-VIVP  606 (917)
T ss_dssp             SSBS---EEEEEGGGGTTHHHHHHHHHHH-HHSSCSBSEEEEECCEECTTS--CCCCSSSSC-CCCH
T ss_pred             CCce---EEEEEecccccHHHHHHHHHHH-hhCCCcccceeEeeeEEcCCC--cCcccccCC-cCCh
Confidence            5565   468999997   4556666665 3454222 3445677776666  799999987 6654

>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major}

Probab=92.43  E-value=0.03  Score=52.63  Aligned_cols=52  Identities=13%  Similarity=0.079  Sum_probs=33.5

Q ss_pred             cccCCCCchHHHH-H--HHHHHHHhCCCCcccc-ccCcccCCCCCCCCcCCCCCCCceecCC
Q 027582           56 LIPCAIDQDPYFR-M--TRDVAPRIGYHKPALI-ESSFFPALQGETGKMSASDPNSAIYVTD  113 (221)
Q Consensus        56 ~vpvG~DQ~~h~~-l--aR~ia~~~n~~~p~~l-~~~~lp~L~g~~~KMSkS~~~s~I~L~D  113 (221)
                      +..+|.||..++. +  ++-.+  .|.+.|..+ .+.++ ..+|  +|||||.+| .|.+.|
T Consensus       297 v~~~GkDii~FH~~~wpa~L~a--~g~~~~~~v~~hg~v-~~~G--~KMSKS~GN-vV~p~d  352 (564)
T 3kfl_A          297 VHVVGKDILKFHAIYWPAFLMS--AELPLPERLVSHGWW-TKDH--KKISKSLGN-AFDPVE  352 (564)
T ss_dssp             EEEEEGGGHHHHHTHHHHHHHH--TTCCCCSCEEEECCE-EETT--EECCTTTTC-CCCHHH
T ss_pred             eEEEeecccchHHHHHHHHHHh--CCCCCCcEEEEcccE-eeCC--ccccccCCC-CCCHHH
Confidence            4688999988422 2  34333  466555443 45677 5566  799999986 776533

>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1

Probab=92.06  E-value=0.026  Score=52.54  Aligned_cols=65  Identities=20%  Similarity=0.335  Sum_probs=33.7

Q ss_pred             cCCCCchH-H--HHHHHHHH-HHhCCCCccccccCcccCCCCCCCCcCCCCCCCceecC---C--CHHHHHHHHhh
Q 027582           58 PCAIDQDP-Y--FRMTRDVA-PRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVT---D--SAKAIKNKINK  124 (221)
Q Consensus        58 pvG~DQ~~-h--~~laR~ia-~~~n~~~p~~l~~~~lp~L~g~~~KMSkS~~~s~I~L~---D--~p~~I~~KI~k  124 (221)
                      +.|.|+.. |  ......++ .-+|.+.|..+++++|.. .|.++|||||.+| .|.+.   +  .|+.++--+.+
T Consensus       235 ~~G~Dh~~~h~s~~~~~~i~~~alG~~~p~~~h~~~i~~-~g~g~KmSKs~Gn-~i~~~~~~~~~~pdalR~~l~~  308 (523)
T 1irx_A          235 PAGKDHLVAGSSYDTGKEIIKEVYGKEAPLSLMYEFVGI-KGQKGKMSGSKGN-VILLSDLYEVLEPGLVRFIYAR  308 (523)
T ss_dssp             CEEHHHHSTTSHHHHHHHHHHHHHCCCCCBCCEECCEEE-SCC---------C-CCCHHHHHTTSCHHHHHHHHHS
T ss_pred             CCCcCccCCCcchhhHHHHHHHHhCCCCCeEEEEEEEEe-CCCCCCCCCcCCC-CCCHHHHHHHcCHHHHHHHHHh
Confidence            56778766 1  12335555 578887787777787765 3223799999986 44332   2  57777766665

>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B

Probab=91.77  E-value=0.044  Score=50.35  Aligned_cols=64  Identities=17%  Similarity=0.123  Sum_probs=37.4

Q ss_pred             cccCCCCch-HHHH--HHHHHHHHhCCCCccc-cccCcccCCCCCCCCcCCCCCCCceecCC-----CHHHHHHHHhh
Q 027582           56 LIPCAIDQD-PYFR--MTRDVAPRIGYHKPAL-IESSFFPALQGETGKMSASDPNSAIYVTD-----SAKAIKNKINK  124 (221)
Q Consensus        56 ~vpvG~DQ~-~h~~--laR~ia~~~n~~~p~~-l~~~~lp~L~g~~~KMSkS~~~s~I~L~D-----~p~~I~~KI~k  124 (221)
                      +..+|.|+. +|++  .+.-.|- +|.+.|.. +++.+|.- +|  +|||||.+| .|.+.|     +++.++--+.+
T Consensus       223 ih~gG~Dl~fpH~~~~~aq~~a~-~g~~~~~~~~h~g~v~~-~G--~KMSKS~GN-~v~~~dll~~~g~dalR~~ll~  295 (461)
T 1li5_A          223 IHGGGSDLMFPHHENEIAQSTCA-HDGQYVNYWMHSGMVMV-DR--EKMSKSLGN-FFTVRDVLKYYDAETVRYFLMS  295 (461)
T ss_dssp             EEECBGGGTTTHHHHHHHHHHHH-SSSCCEEEECCBCCEEE-TT--BCCCGGGTC-CCBHHHHHTTSCHHHHHHHHHS
T ss_pred             EEeccCccCchHHHHHHHHHHHh-cCCCCCcEEEEeeEEEE-CC--eEccccCCC-ccChhHHhhhCCHHHHHHHHHc
Confidence            457899976 4543  3333322 57655543 45566543 55  799999986 665432     45666554444

>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID}

Probab=91.70  E-value=0.037  Score=51.52  Aligned_cols=52  Identities=19%  Similarity=0.080  Sum_probs=23.0

Q ss_pred             cccCCCCchHH-H--HHHHHHHHHhCCCCcccc-ccCcccCCCCCCCCcCCCCCCCceecCC
Q 027582           56 LIPCAIDQDPY-F--RMTRDVAPRIGYHKPALI-ESSFFPALQGETGKMSASDPNSAIYVTD  113 (221)
Q Consensus        56 ~vpvG~DQ~~h-~--~laR~ia~~~n~~~p~~l-~~~~lp~L~g~~~KMSkS~~~s~I~L~D  113 (221)
                      +...|.||... .  -.++-.+  .|.+.|..+ .+.++. ++|  +|||||.+| .|.+.|
T Consensus       279 v~~~G~D~~~fh~~~~~a~l~a--~g~~~~~~v~~hg~v~-~~G--~KMSKS~GN-vi~p~d  334 (536)
T 4dlp_A          279 AHIIGKDISRFHAVYWPAFLMS--AQLPLPKRVFAHGFLF-NRG--EKMSKSVGN-VIDPFE  334 (536)
T ss_dssp             EEEEEGGGHHHHHTHHHHHHHH--TTCCCCSCEEEECCEE-C---------------CCHHH
T ss_pred             eEEeechHHHHHHHHHHHHHHH--CCCCCCcEEEeeeeEe-eCC--ceecccCCC-CCCHHH
Confidence            46889999884 2  2245444  466555443 356664 466  699999986 776543

>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis}

Probab=91.59  E-value=0.036  Score=50.07  Aligned_cols=52  Identities=19%  Similarity=0.133  Sum_probs=22.6

Q ss_pred             cccCCCCchH-HHHHHHHHHHHh-CCCCc-ccc-ccCcccCCCCCCCCcCCCCCCCceec
Q 027582           56 LIPCAIDQDP-YFRMTRDVAPRI-GYHKP-ALI-ESSFFPALQGETGKMSASDPNSAIYV  111 (221)
Q Consensus        56 ~vpvG~DQ~~-h~~laR~ia~~~-n~~~p-~~l-~~~~lp~L~g~~~KMSkS~~~s~I~L  111 (221)
                      +..+|.|+.. |++...-...-+ |.+.+ .++ ++.+|. ++|  +|||||.+| .|.+
T Consensus       247 i~~~G~D~~~~H~~~~~a~~~a~~g~~~~~~~~~h~g~v~-~~G--~KMSKS~GN-~v~~  302 (414)
T 3c8z_A          247 IQGGGSDLIFPHHEYSAAHAESVTGERRFARHYVHTGMIG-WDG--HKMSKSRGN-LVLV  302 (414)
T ss_dssp             EEEEEGGGTTTHHHHHHHHHHHHHCCSCSEEEEEEECCBC-----------------CBH
T ss_pred             EEEeccccccHHHHHHHHHHHHhcCCCCcCeEEEEcCEEe-cCC--eEcccccCC-cCCH
Confidence            4678999876 777655555544 65333 233 334554 466  699999986 6665

>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A

Probab=91.47  E-value=0.029  Score=55.49  Aligned_cols=56  Identities=20%  Similarity=0.169  Sum_probs=36.5

Q ss_pred             cCCCCcccccCCCCchHHHHHHHHHHHHh---CCCCc--cccccCcccCCCCCCCCcCCCCCCCceecC
Q 027582           49 GKDHLRCLIPCAIDQDPYFRMTRDVAPRI---GYHKP--ALIESSFFPALQGETGKMSASDPNSAIYVT  112 (221)
Q Consensus        49 ~~ad~~~~vpvG~DQ~~h~~laR~ia~~~---n~~~p--~~l~~~~lp~L~g~~~KMSkS~~~s~I~L~  112 (221)
                      |.+|   +...|.||.. +=.+|.++...   |. .|  .++.+.++...+|  +|||||.+| .|...
T Consensus       480 ~P~d---~~v~G~Dii~-~W~a~~~~~~~~~~g~-~Pfk~v~~hG~vld~~G--~KMSKSlGN-vIdP~  540 (862)
T 1gax_A          480 YPGD---VLVTGYDILF-LWVSRMEVSGYHFMGE-RPFKTVLLHGLVLDEKG--QKMSKSKGN-VIDPL  540 (862)
T ss_dssp             CSBS---CEEEEGGGTT-TTHHHHHHHHHHHSSS-CSBSEEEEECCEECTTS--CBCCTTTTC-CCCHH
T ss_pred             CCce---EEecCccccc-cHHHHHHHHHHHhcCC-CcccEEEEeeeEEcCCC--CCccccCCC-CCCHH
Confidence            4554   4688999875 34566665533   33 34  3455678777777  799999986 66543

>4g6z_A Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, AARS, class 1B AARS, ATP-dependen charging, protein synthesis, structural genomics; HET: GLU; 2.05A {Burkholderia thailandensis}

Probab=91.13  E-value=0.53  Score=43.63  Aligned_cols=68  Identities=15%  Similarity=0.077  Sum_probs=54.2

Q ss_pred             ccccCCCCchHHHHHHHHHHHHhCCCCccccccCcccCCCCCCCCcCCCCCCCcee-cC---CCHHHHHHHHhh
Q 027582           55 CLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIY-VT---DSAKAIKNKINK  124 (221)
Q Consensus        55 ~~vpvG~DQ~~h~~laR~ia~~~n~~~p~~l~~~~lp~L~g~~~KMSkS~~~s~I~-L~---D~p~~I~~KI~k  124 (221)
                      |+|.-|.|....---=..+.+.||.+.|...|.|+|.+-+|  +||||.++..+|. +-   -.|+.|..-+..
T Consensus       222 ThViRG~D~l~~tprq~~l~~aLG~~~P~f~HlpLi~~~~g--~KLSKR~g~~sl~~~r~~G~~peal~n~l~~  293 (490)
T 4g6z_A          222 THVIRGDDHVNNTPRQINILRALGGEVPVYAHLPTVLNEQG--EKMSKRHGAMSVMGYRDAGYLPEAVLNYLAR  293 (490)
T ss_dssp             CEEEEEGGGGGGHHHHHHHHHHTTCCCCEEEEECCEECTTS--SBCCTTTTCCBHHHHHHTTCCHHHHHHHHHT
T ss_pred             CEEEeccccccChHHHHHHHHHcCCCCCeEEEecceeCCCC--CcccCCCCCcCHHHHHHCCCCHHHHHHHHHH
Confidence            68899999988777777788899999999989999999887  7999998754442 21   358888887776

>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A

Probab=90.81  E-value=0.057  Score=50.52  Aligned_cols=64  Identities=16%  Similarity=0.152  Sum_probs=36.3

Q ss_pred             ccCCCCchHH-HHHHHHHHHHhCCCCcccc-ccCcccCCCCCCCCcCCCCCCCceecCC-----CHHHHHHHHhh
Q 027582           57 IPCAIDQDPY-FRMTRDVAPRIGYHKPALI-ESSFFPALQGETGKMSASDPNSAIYVTD-----SAKAIKNKINK  124 (221)
Q Consensus        57 vpvG~DQ~~h-~~laR~ia~~~n~~~p~~l-~~~~lp~L~g~~~KMSkS~~~s~I~L~D-----~p~~I~~KI~k  124 (221)
                      -.+|.||..+ ..+--.+...+|++.|..+ .+.++.. +|  +|||||.+| .|.+.|     .++.++--+.+
T Consensus       304 ~~~G~D~~~fh~~~~~a~l~~~g~~~p~~v~~hg~v~~-~G--~KMSKS~GN-vv~p~d~i~~~GaDalR~~ll~  374 (560)
T 3h99_A          304 HFIGKDIVYFLSLFWPAMLEGSNFRKPSNLFVHGYVTV-NG--AKMSKSRGT-FIKASTWLNHFDADSLRYYYTA  374 (560)
T ss_dssp             EEEEGGGHHHHHTHHHHHHHHTTBCCCSEEEEECCEEE-TT--EECCTTTTC-CCBHHHHHHHSCHHHHHHHHHH
T ss_pred             EEeccccchhHHHHHHHHHHhCCCCCCcEEEEEeEEEe-CC--eeccccCCC-cCCHHHHHHHcCcHHHHHHHHH
Confidence            3579999983 2222123333666666433 3455543 66  799999986 676533     24445444444

>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*

Probab=90.08  E-value=0.12  Score=50.55  Aligned_cols=70  Identities=24%  Similarity=0.215  Sum_probs=38.9

Q ss_pred             cCCCCcccccCCCCchH-HHHHHHHHHHH-hCCCCc-cccccCcccCCCCCCCCcCCCCCCCceecCC-----CHHHHHH
Q 027582           49 GKDHLRCLIPCAIDQDP-YFRMTRDVAPR-IGYHKP-ALIESSFFPALQGETGKMSASDPNSAIYVTD-----SAKAIKN  120 (221)
Q Consensus        49 ~~ad~~~~vpvG~DQ~~-h~~laR~ia~~-~n~~~p-~~l~~~~lp~L~g~~~KMSkS~~~s~I~L~D-----~p~~I~~  120 (221)
                      +.+|   +...|.||.. |+......+.- ++.+.+ .++.+.++...+|  +|||||.+| .|.+.|     .++.++-
T Consensus       543 ~P~d---l~~~G~D~~r~w~~~~~~~~~~~~~~~pf~~v~~hg~vl~~~G--~KMSKS~GN-vV~p~dli~~yGaDalR~  616 (821)
T 1ile_A          543 FPAD---FIAEGIDQTRGWFNSLHQLGVMLFGSIAFKNVICHGLILDEKG--QKMSKSKGN-VVDPWDIIRKFGADALRW  616 (821)
T ss_dssp             SSBS---BEEEEGGGGGTHHHHHHHHHHHHHSSCSBSEEEEECCEECTTS--SCCCTTTTC-CCCHHHHHTTTCHHHHHH
T ss_pred             CCcc---cccchhhhhccHHHHHHHHHHHhcCCCCcceEEEEeeEECCCC--CCCCccCCC-CCCHHHHHHHhCHHHHHH
Confidence            4454   3568999973 33222222222 344333 3445677777777  799999986 665432     3555554


Q ss_pred             HHhh
Q 027582          121 KINK  124 (221)
Q Consensus       121 KI~k  124 (221)
                      -+..
T Consensus       617 ~ll~  620 (821)
T 1ile_A          617 YIYV  620 (821)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            4444

>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A {Methanothermobacter thermautotrophicusorganism_taxid}

Probab=90.00  E-value=0.054  Score=50.98  Aligned_cols=67  Identities=10%  Similarity=0.074  Sum_probs=39.6

Q ss_pred             chhhhhccCCCCCCCCcccccCCCCcccccCCCCchHHHHHHHHHHHHhCCCCccccccCcccCCCCCCCCcCCCCCC
Q 027582           29 SFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPN  106 (221)
Q Consensus        29 ~YP~lqaa~~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~~laR~ia~~~n~~~p~~l~~~~lp~L~g~~~KMSkS~~~  106 (221)
                      .||..+-|.++     |....+.   |+|..|.|...+-..=.-+...+|.+.|...|.++| .++|  .|||||..+
T Consensus       270 g~PtYhfa~~v-----DD~~~GI---ThviRG~D~~~nt~~Q~~l~~alG~~~P~y~H~~~L-~~~g--~KLSKR~~~  336 (553)
T 3aii_A          270 VYPMMNFSVAV-----DDHLLGV---THVLRGKDHLANREKQEYLYRHLGWEPPEFIHYGRL-KMDD--VALSTSGAR  336 (553)
T ss_dssp             EEECHHHHHHH-----HHHHTTC---CEEEC-----CHHHHHHHHHHHHTCCCCEEECCCCB-C---------CHHHH
T ss_pred             eeeeeeeeeee-----eeccCCC---ceEeccHhhhhCHHHHHHHHHHcCCCCCeEEEeeEE-ecCC--ceechhhhh
Confidence            46776666444     4444554   689999999888766666678899988988888988 5666  699999653

>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii}

Probab=89.98  E-value=0.11  Score=51.98  Aligned_cols=68  Identities=21%  Similarity=0.104  Sum_probs=39.6

Q ss_pred             cCCCCcccccCCCCchH-HHHHHHHHHHH-hCC-CCc-cccccCcccCCCCCCCCcCCCCCCCceecCC-----CHHHHH
Q 027582           49 GKDHLRCLIPCAIDQDP-YFRMTRDVAPR-IGY-HKP-ALIESSFFPALQGETGKMSASDPNSAIYVTD-----SAKAIK  119 (221)
Q Consensus        49 ~~ad~~~~vpvG~DQ~~-h~~laR~ia~~-~n~-~~p-~~l~~~~lp~L~g~~~KMSkS~~~s~I~L~D-----~p~~I~  119 (221)
                      +.+|   +...|.||.. |+...+-...- ++. +-| .++++.++.. +|  +|||||.+| .|...|     .++.++
T Consensus       602 ~P~D---i~~~G~D~i~~H~~~~~~~~~a~~~~~~~pk~v~~~G~v~~-~G--~KMSKS~GN-vv~p~d~i~~yGaDalR  674 (967)
T 1wz2_A          602 YPLD---WRCSGKDLIPNHLTFFIFNHVAIFREEHWPKGIAVNGFGTL-EG--QKMSKSKGN-VLNFIDAIEENGADVVR  674 (967)
T ss_dssp             CSCS---EEEEEGGGTTTHHHHHHHHHHHHSCSTTSCCCEEEECCEEE-SS--SCCCTTTCC-CCBHHHHHHTTCHHHHH
T ss_pred             CCCe---EEeeeeCcchhHHHHHHHHHHHHcCcccccceEEEeeEEee-CC--EEccccccC-CCCHHHHHHHhChHHHH
Confidence            4565   3579999964 65555433333 332 223 3445666654 56  799999986 666532     455565


Q ss_pred             HHHh
Q 027582          120 NKIN  123 (221)
Q Consensus       120 ~KI~  123 (221)
                      --+.
T Consensus       675 ~~ll  678 (967)
T 1wz2_A          675 LYIM  678 (967)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5553

>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii}

Probab=89.35  E-value=0.11  Score=50.84  Aligned_cols=67  Identities=21%  Similarity=0.117  Sum_probs=38.2

Q ss_pred             cCCCCcccccCCCCchH-HHHHHHHHHHH-hCC-CCc-cccccCcccCCCCCCCCcCCCCCCCceecCC-----CHHHHH
Q 027582           49 GKDHLRCLIPCAIDQDP-YFRMTRDVAPR-IGY-HKP-ALIESSFFPALQGETGKMSASDPNSAIYVTD-----SAKAIK  119 (221)
Q Consensus        49 ~~ad~~~~vpvG~DQ~~-h~~laR~ia~~-~n~-~~p-~~l~~~~lp~L~g~~~KMSkS~~~s~I~L~D-----~p~~I~  119 (221)
                      +.+|   +..+|.||.. |+...+-...- ++. +-| .++++.+|.. +|  +|||||.+| .|.+.|     .++.++
T Consensus       602 ~p~D---i~~~G~D~~~~H~~~~~~~~~~~~~~~~~pk~v~~~G~v~~-~G--~KMSKS~GN-vv~p~dli~~yGaDalR  674 (810)
T 1wkb_A          602 YPLD---WRCSGKDLIPNHLTFFIFNHVAIFREEHWPKGIAVNGFGTL-EG--QKMSKSKGN-VLNFIDAIEENGADVVR  674 (810)
T ss_dssp             CSCS---EEEEEGGGTTTHHHHHHHHHHHHSCGGGSCCEEEEECCEEE-TT--BCCCTTTTC-CCBHHHHHHHHCHHHHH
T ss_pred             CCce---EEeecccccccHHHHHHHHHHHHcCccccccEEEEEeEEEe-CC--eehhhcCCC-cCCHHHHHHHcChHHHH
Confidence            3455   3579999965 65555443332 232 223 3445556553 55  799999986 776543     344444


Q ss_pred             HHH
Q 027582          120 NKI  122 (221)
Q Consensus       120 ~KI  122 (221)
                      --+
T Consensus       675 ~~l  677 (810)
T 1wkb_A          675 LYI  677 (810)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            444

>4gri_A Glutamate--tRNA ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, aminoacyl-tRNA synthetase; HET: GLU; 2.60A {Borrelia burgdorferi}

Probab=87.80  E-value=0.27  Score=45.67  Aligned_cols=50  Identities=10%  Similarity=0.003  Sum_probs=45.6

Q ss_pred             ccccCCCCchHHHHHHHHHHHHhCCCCccccccCcccCCCCCCCCcCCCCCC
Q 027582           55 CLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPN  106 (221)
Q Consensus        55 ~~vpvG~DQ~~h~~laR~ia~~~n~~~p~~l~~~~lp~L~g~~~KMSkS~~~  106 (221)
                      |+|.-|.|...+--.=.-+.+.||.+.|...|.++|.+-+|  +|+||.++.
T Consensus       231 THViRG~D~l~sTp~q~~l~~alg~~~P~y~H~pli~~~~g--~kLSKR~~~  280 (512)
T 4gri_A          231 THVLRAQEWVSSGPLHVLLYKAFKWKPPIYCHLPMVMGNDG--QKLSKRHGS  280 (512)
T ss_dssp             SEEEEEGGGGGGHHHHHHHHHHHTCCCCEEEEECCCBCTTS--SBCCTTTSC
T ss_pred             ceeccccccccccHHHHHHHHHcCCCCCeEEecchhccccc--cccCccccc
Confidence            68999999999988888899999999999999999999988  799999864

>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1

Probab=85.04  E-value=0.11  Score=49.15  Aligned_cols=53  Identities=19%  Similarity=0.178  Sum_probs=34.8

Q ss_pred             ccCCCCchHHHHHHHHHHHHhCCCCc--cc--cccCcccCCCCCCCCcCCCCCCCceecCC
Q 027582           57 IPCAIDQDPYFRMTRDVAPRIGYHKP--AL--IESSFFPALQGETGKMSASDPNSAIYVTD  113 (221)
Q Consensus        57 vpvG~DQ~~h~~laR~ia~~~n~~~p--~~--l~~~~lp~L~g~~~KMSkS~~~s~I~L~D  113 (221)
                      -.+|.||..|+.-...+++.+|++.+  ..  +.+.+|. +.|  +|||||.+| .|.+.|
T Consensus       351 yV~g~~h~~~~~~~~~~~~alG~~~~~~~~~H~~~g~v~-~~g--~KMSKr~Gn-~v~l~d  407 (592)
T 1iq0_A          351 NVVDVRQSHPQALVRAALALAGYPALAEKAHHLAYETVL-LEG--RQMSGRKGL-AVSVDE  407 (592)
T ss_dssp             EEEESSSCCCHHHHHHHHHHTTCHHHHTTEEEEEECCEE-ETT--BCSCC-----CCBHHH
T ss_pred             EEEeccHHHHHHHHHHHHHHcCCCCCCCcEEEEEeeEEE-cCC--CcccCCCCC-ccCHHH
Confidence            36789999999999999999998542  22  2234554 355  799999986 776543

>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii}

Probab=84.10  E-value=0.19  Score=46.24  Aligned_cols=64  Identities=14%  Similarity=0.057  Sum_probs=34.9

Q ss_pred             cccCCCCchH-HHHHHHHHHHH---hCCCCccccccCcccCCCCCCCCcCCCCCCCceecCC-----CHHHHHHHHhh
Q 027582           56 LIPCAIDQDP-YFRMTRDVAPR---IGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTD-----SAKAIKNKINK  124 (221)
Q Consensus        56 ~vpvG~DQ~~-h~~laR~ia~~---~n~~~p~~l~~~~lp~L~g~~~KMSkS~~~s~I~L~D-----~p~~I~~KI~k  124 (221)
                      +.-+|.|... |++  +++|..   +|.|-+....+..+...+|  +|||||.+| .|.+.|     +++.++--+..
T Consensus       226 ih~gG~Dl~FpHhe--neiaqs~a~~g~p~~~~w~H~g~v~~~G--~KMSKSlGN-~i~~~dll~~~g~dalR~~lls  298 (462)
T 3tqo_A          226 IHGGGLDLKFPHHE--NEIAQSEAGEEKPFVKLWMHAGLLEINK--EKMSKSLGN-IISIREALKESDVEVLRYFLLS  298 (462)
T ss_dssp             EEEEEGGGTTTHHH--HHHHHHHHHHSSCCEEEEEEECCEEETT--EECCTTTTC-CCBHHHHHHHSCHHHHHHHHHH
T ss_pred             EEccccccccHHHH--hHHHHHHHHcCCCcceEEEEccEEecCC--cCccccCCC-cccHHHHHhhcChHHhhhhhcc
Confidence            4577888654 655  444443   3443233333333334577  799999986 665533     35555443333

>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*

Probab=83.66  E-value=0.47  Score=47.03  Aligned_cols=40  Identities=15%  Similarity=0.061  Sum_probs=24.6

Q ss_pred             cCCCCcccccCCCCc-hHHHHHHHHHHH---HhCC---CCcc--ccccCccc
Q 027582           49 GKDHLRCLIPCAIDQ-DPYFRMTRDVAP---RIGY---HKPA--LIESSFFP   91 (221)
Q Consensus        49 ~~ad~~~~vpvG~DQ-~~h~~laR~ia~---~~n~---~~p~--~l~~~~lp   91 (221)
                      +.+|   +..+|.|| .-|+-.+|-+.+   ..|+   .+|.  ++.+.+|-
T Consensus       542 ~PvD---~yigG~EHailHllyaRf~~~~L~~~g~~~~~ePFk~ll~qGmVl  590 (880)
T 4arc_A          542 LPVD---IYIGGIEHAIMHLLYFRFFHKLMRDAGMVNSDEPAKQLLCQGMVL  590 (880)
T ss_dssp             CSEE---EEECCGGGTTTHHHHHHHHHHHHHHTTSCCCSCSEEEEECCCCEE
T ss_pred             CCce---EeecchhhHHHHHHHHHHHHHHHHHhhcccCCCChHHeEEeceEe
Confidence            4554   56899999 568888885533   3343   5663  34456663

>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A

Probab=82.21  E-value=0.41  Score=45.60  Aligned_cols=55  Identities=13%  Similarity=0.109  Sum_probs=39.6

Q ss_pred             cccCCCCchHHHHHHHHHHHHhCCCC-cc---ccccCcccCCCCCCCCcCCCCC--CCceecCCC
Q 027582           56 LIPCAIDQDPYFRMTRDVAPRIGYHK-PA---LIESSFFPALQGETGKMSASDP--NSAIYVTDS  114 (221)
Q Consensus        56 ~vpvG~DQ~~h~~laR~ia~~~n~~~-p~---~l~~~~lp~L~g~~~KMSkS~~--~s~I~L~D~  114 (221)
                      +-.+|.||..|+.-...++..+|++. +.   ++.+.+|- +.|  +|||||.+  | .|.+.|=
T Consensus       380 IyV~g~~q~~~~~~l~~~l~~lG~~~~~~~~~h~~~g~V~-~~~--~KMSkr~G~~n-~v~l~dL  440 (629)
T 2zue_A          380 INVIGAEQKHPQLAIKYALQLLGFEDAAANLYHLAYEHVE-RPE--GKFSGRKGTWV-GFTVDEV  440 (629)
T ss_dssp             EEEEEGGGHHHHHHHHHHHHHTTCHHHHHTEEEEEECCEE-BTT--BCCCTTTTTTT-TCBHHHH
T ss_pred             EEEEeCcHhhHHHHHHHHHHHcCCCCCCCeEEEEEeeeEE-cCC--CcccCCCCCCC-eeeHHHH
Confidence            44679999999999999999999854 32   22234554 344  69999988  7 7776543

>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A*

Probab=80.23  E-value=0.55  Score=44.59  Aligned_cols=57  Identities=12%  Similarity=0.166  Sum_probs=40.1

Q ss_pred             cccCCCCchHHHHHHHHHHHHhCCCCccc-cccCcccCCCCCCCCcCCCCCCCceecCCCHHHH
Q 027582           56 LIPCAIDQDPYFRMTRDVAPRIGYHKPAL-IESSFFPALQGETGKMSASDPNSAIYVTDSAKAI  118 (221)
Q Consensus        56 ~vpvG~DQ~~h~~laR~ia~~~n~~~p~~-l~~~~lp~L~g~~~KMSkS~~~s~I~L~D~p~~I  118 (221)
                      +-.+|.||..|+.-...+++.+|++.+.. .|..+  |+-   .||||+.++ .|.|.|=-+++
T Consensus       368 IyV~g~~q~~~f~q~~~~~~~lG~~~~~~~~Hv~f--g~v---~kMSkR~G~-~v~L~dLlde~  425 (607)
T 1f7u_A          368 IYVIASQQDLHAAQFFEILKQMGFEWAKDLQHVNF--GMV---QGMSTRKGT-VVFLDNILEET  425 (607)
T ss_dssp             EEECCGGGHHHHHHHHHHHHHTTCGGGGGEEEECC--CCE---ESCCGGGTC-CCBHHHHHHHH
T ss_pred             EEEEcChHhhHHHHHHHHHHHcCCCcCcEEEEecc--ccc---ccccCCCCC-cccHHHHHHHH
Confidence            33599999999999999999999865533 34444  222   379999886 77765433333

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	221
d1r6ta2	386	c.26.1.1 (A:82-467) Tryptophanyl-tRNA synthetase (	1e-54
d1n3la_	339	c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Hum	2e-18
d2ts1a_	319	c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Bac	3e-14
d1j1ua_	306	c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Arc	1e-12
d1jila_	323	c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Sta	1e-11

>d1r6ta2 c.26.1.1 (A:82-467) Tryptophanyl-tRNA synthetase (TrpRS) {Human (Homo sapiens) [TaxId: 9606]} Length = 386

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Tryptophanyl-tRNA synthetase (TrpRS)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  177 bits (449), Expect = 1e-54
 Identities = 133/216 (61%), Positives = 169/216 (78%)

Query: 1   MVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCA 60
           +VK+ K VT+N+V GIFGFT  D IGK+SFP +QA PSF +SFP +F  +  ++CLIPCA
Sbjct: 170 VVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCA 229

Query: 61  IDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKN 120
           IDQDPYFRMTRDVAPRIGY KPAL+ S+FFPALQG   KMSASDPNS+I++TD+AK IK 
Sbjct: 230 IDQDPYFRMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNSSIFLTDTAKQIKT 289

Query: 121 KINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEV 180
           K+NK+AFSGG++++E HR+ G N +VD+   YL+FFLEDD +LE I+K+Y +G MLTGE+
Sbjct: 290 KVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQIRKDYTSGAMLTGEL 349

Query: 181 KQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 216
           K+ L +VL  L+  HQ  R  VTDE+V  FM  R L
Sbjct: 350 KKALIEVLQPLIAEHQARRKEVTDEIVKEFMTPRKL 385

>d1n3la_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Human (Homo sapiens) [TaxId: 9606]} Length = 339

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Tyrosyl-tRNA synthetase (TyrRS)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.0 bits (196), Expect = 2e-18
 Identities = 32/202 (15%), Positives = 67/202 (33%), Gaps = 19/202 (9%)

Query: 1   MVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCA 60
              V +  +      +        +  + +P +QA+                        
Sbjct: 134 SSVVTQHDSKKAGAEVVKQVEHPLLSGLLYPGLQALDEEYLKV-----------DAQFGG 182

Query: 61  IDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKN 120
           IDQ   F       P +GY K   + +   P L     KMS+S+  S I + D  + +K 
Sbjct: 183 IDQRKIFTFAEKYLPALGYSKRVHLMNPMVPGLT--GSKMSSSEEESKIDLLDRKEDVKK 240

Query: 121 KINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLE------DDAELEHIKKEYGAGG 174
           K+ K     G            ++   +  +++    E             ++K++ A  
Sbjct: 241 KLKKAFCEPGNVENNGVLSFIKHVLFPLKSEFVILRDEKWGGNKTYTAYVDLEKDFAAEV 300

Query: 175 MLTGEVKQRLAKVLTELVERHQ 196
           +  G++K  +   L +L++  +
Sbjct: 301 VHPGDLKNSVEVALNKLLDPIR 322

>d2ts1a_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Bacillus stearothermophilus, nca 1503 [TaxId: 1422]} Length = 319

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Tyrosyl-tRNA synthetase (TyrRS)
species: Bacillus stearothermophilus, nca 1503 [TaxId: 1422]

 Score = 67.8 bits (165), Expect = 3e-14
 Identities = 24/204 (11%), Positives = 56/204 (27%), Gaps = 19/204 (9%)

Query: 1   MVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPV-QAVPSFPSSFPHLFSGKDHLRCLIPC 59
           +  +       K   +     ++ +       +     S+     + F            
Sbjct: 130 LDVITFLRDVGKHFSVNYMMAKESVQSRIETGISFTEFSYMMLQAYDFLRLYETEGCRLQ 189

Query: 60  AIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIK 119
               D +  +T  +         A       P +    G       +  I++        
Sbjct: 190 IGGSDQWGNITAGLELIRKTKGEARAFGLTIPLVTKADGTKFGKTESGTIWLDKEKT--- 246

Query: 120 NKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFF-LEDDAELEHIKKEYGAGGMLTG 178
                        S     +   N +    ++YL +F      E+E +++E         
Sbjct: 247 -------------SPYEFYQFWINTDDRDVIRYLKYFTFLSKEEIEALEQELREAPEKR- 292

Query: 179 EVKQRLAKVLTELVERHQVARAAV 202
             ++ LA+ +T+LV   +  R A+
Sbjct: 293 AAQKTLAEEVTKLVHGEEALRQAI 316

>d1j1ua_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 306

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Tyrosyl-tRNA synthetase (TyrRS)
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 63.5 bits (153), Expect = 1e-12
 Identities = 27/159 (16%), Positives = 54/159 (33%), Gaps = 14/159 (8%)

Query: 44  PHLFSGKDHLRCL-IPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSA 102
               +   +L        ++Q     + R+    +   K   I +     L GE     +
Sbjct: 153 IMQVNDIHYLGVDVAVGGMEQRKIHMLARE----LLPKKVVCIHNPVLTGLDGE--GKMS 206

Query: 103 SDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRK-----LGANLEVDIPVKYLSFFL 157
           S   + I V DS + I+ KI K     G        +     L   L +  P K+     
Sbjct: 207 SSKGNFIAVDDSPEEIRAKIKKAYCPAGVVEGNPIMEIAKYFLEYPLTIKRPEKFGGDL- 265

Query: 158 EDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQ 196
                 E ++  +    +   ++K  +A+ L +++E  +
Sbjct: 266 -TVNSYEELESLFKNKELHPMDLKNAVAEELIKILEPIR 303

>d1jila_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Staphylococcus aureus [TaxId: 1280]} Length = 323

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Tyrosyl-tRNA synthetase (TyrRS)
species: Staphylococcus aureus [TaxId: 1280]

 Score = 60.5 bits (146), Expect = 1e-11
 Identities = 24/203 (11%), Positives = 60/203 (29%), Gaps = 19/203 (9%)

Query: 1   MVKVAKCVTYNKVVGIFGFTG-EDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPC 59
           +  ++    Y K VG+    G +    ++         ++       F   +        
Sbjct: 130 ISLISFLRDYGKHVGVNYMLGKDSIQSRLEHGISYTEFTYTILQAIDFGHLNRELNCKIQ 189

Query: 60  AIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIK 119
               D +  +T  +      +          P +    GK      + A+++        
Sbjct: 190 VGGSDQWGNITSGIELMRRMYGQTDAYGLTIPLVTKSDGKKFGKSESGAVWLDAE----- 244

Query: 120 NKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFF-LEDDAELEHIKKEYGAGGMLTG 178
                      + S     +   N   +  +K+L +F      E++ +++       L  
Sbjct: 245 -----------KTSPYEFYQFWINQSDEDVIKFLKYFTFLGKEEIDRLEQSKNEAPHLR- 292

Query: 179 EVKQRLAKVLTELVERHQVARAA 201
           E ++ LA+ +T+ +        A
Sbjct: 293 EAQKTLAEEVTKFIHGEDALNDA 315

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	221
d1r6ta2	386	Tryptophanyl-tRNA synthetase (TrpRS) {Human (Homo	100.0
d1i6la_	326	Tryptophanyl-tRNA synthetase (TrpRS) {Bacillus ste	100.0
d1n3la_	339	Tyrosyl-tRNA synthetase (TyrRS) {Human (Homo sapie	100.0
d1j1ua_	306	Tyrosyl-tRNA synthetase (TyrRS) {Archaeon Methanoc	100.0
d1h3fa1	343	Tyrosyl-tRNA synthetase (TyrRS) {Thermus thermophi	100.0
d1jila_	323	Tyrosyl-tRNA synthetase (TyrRS) {Staphylococcus au	99.86
d2ts1a_	319	Tyrosyl-tRNA synthetase (TyrRS) {Bacillus stearoth	99.78
d1ffya3	450	Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus	95.39
d1nzja_	286	Glutamyl-Q tRNA-Asp synthetase YadB {Escherichia c	94.77
d1ilea3	452	Isoleucyl-tRNA synthetase (IleRS) {Thermus thermop	94.57
d1irxa2	317	Class I lysyl-tRNA synthetase {Archaeon Pyrococcus	94.41
d1ivsa4	425	Valyl-tRNA synthetase (ValRS) {Thermus thermophilu	93.85
d1j09a2	305	Glutamyl-tRNA synthetase (GluRS) {Thermus thermoph	92.97
d2d5ba2	348	Methionyl-tRNA synthetase (MetRS) {Thermus thermop	92.94
d1iq0a2	370	Arginyl-tRNA synthetase (ArgRS) {Thermus thermophi	89.82
d1pfva2	350	Methionyl-tRNA synthetase (MetRS) {Escherichia col	86.66
d1f7ua2	348	Arginyl-tRNA synthetase (ArgRS) {Baker's yeast (Sa	85.16
d1li5a2	315	Cysteinyl-tRNA synthetase (CysRS) {Escherichia col	83.27
d1rqga2	361	Methionyl-tRNA synthetase (MetRS) {Pyrococcus abys	81.9

>d1r6ta2 c.26.1.1 (A:82-467) Tryptophanyl-tRNA synthetase (TrpRS) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Tryptophanyl-tRNA synthetase (TrpRS)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.7e-55  Score=394.26  Aligned_cols=214  Identities=60%  Similarity=1.029  Sum_probs=201.7

Q ss_pred             ccccccccHHHHHHhhCCCCCCcccccchhhhhccCCCCCCCCcccccCCCCcccccCCCCchHHHHHHHHHHHHhCCCC
Q 027582            2 VKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHK   81 (221)
Q Consensus         2 ~~l~r~~t~k~~~~~~g~~~~~~~g~l~YP~lqaa~~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~~laR~ia~~~n~~~   81 (221)
                      .+++|++|++++++++|+.++.|+|+++||+|||||+|..++|.++.++.+++|+||||.||+||+++|||+|+|||+++
T Consensus       171 ~~l~r~~t~~~~k~~~~~~~~~~~g~~~YP~lQaaDil~~~~d~~~~~~~~~~~lvpvG~DQ~~h~~ltRDia~r~~~~~  250 (386)
T d1r6ta2         171 VKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQDPYFRMTRDVAPRIGYPK  250 (386)
T ss_dssp             HHHHHTCBHHHHHHHHCCCTTSBHHHHHHHHHHHGGGSGGGCHHHHTTCCCCEEEEEEEGGGHHHHHHHHHHGGGGTCCC
T ss_pred             HHHHHhcchhHHHHhhccccCCcCcccccHHHHHHHHHHhcChhhhccccccccccccchhHHHHHHHHHHHHHHhCCCC
Confidence            57899999999999999999999999999999999888888888888888888999999999999999999999999999


Q ss_pred             ccccccCcccCCCCCCCCcCCCCCCCceecCCCHHHHHHHHhhccccCCc-chhhhhhhcCCCccchhHHHHHhhhcCCh
Q 027582           82 PALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQ-ESVELHRKLGANLEVDIPVKYLSFFLEDD  160 (221)
Q Consensus        82 p~~l~~~~lp~L~g~~~KMSkS~~~s~I~L~D~p~~I~~KI~k~A~td~~-~~~~~~~~~~~~p~v~~~~~~l~~~~~~~  160 (221)
                      |.+++++++|||+|+++|||||+++|+|+|+|+|++|++||++ |+|+++ .+.+++...++||++++++.|+.+|..++
T Consensus       251 p~~l~~~~lpgL~G~~~KMSsS~~~s~I~l~D~~~~i~~KI~~-~~~~~~~~~~~e~~~~~g~~~~~v~~~~l~~f~~d~  329 (386)
T d1r6ta2         251 PALLHSTFFPALQGAQTKMSASDPNSSIFLTDTAKQIKTKVNK-HAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDD  329 (386)
T ss_dssp             CEEEEECCCEETTEEEEECCTTSTTCCCBTTCCHHHHHHHHHH-HSCCCSCSSHHHHHHHCCCTTTCHHHHHHHHHCCCH
T ss_pred             ceeeccccccCCCCcccccccCCCCceeeecCCHHHHHHHhhh-eeeecCCcccccccccCCCcchhHHHHHHHHHcCCH
Confidence            9999999999999987899999999999999999999999999 777554 57778888999999999999999998888


Q ss_pred             HhHHHHHHHHhcCCCChHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhcCCC
Q 027582          161 AELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL  216 (221)
Q Consensus       161 ~~~eel~~~y~~g~~~~~~lK~~lae~l~~~l~pire~~~~~~~~~l~~il~~~~~  216 (221)
                      +++++++++|.+|+++|++||+.||+.|+++|+|+|||+++++++.+++||..+++
T Consensus       330 ~~~eel~~~y~~G~l~~gd~K~~lae~l~~~l~~~rekr~~~~~~~v~~~l~~~kl  385 (386)
T d1r6ta2         330 DKLEQIRKDYTSGAMLTGELKKALIEVLQPLIAEHQARRKEVTDEIVKEFMTPRKL  385 (386)
T ss_dssp             HHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHTSCCCC
T ss_pred             hHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence            99999999999999999999999999999999999999999999999999998865

>d1i6la_ c.26.1.1 (A:) Tryptophanyl-tRNA synthetase (TrpRS) {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Tryptophanyl-tRNA synthetase (TrpRS)
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=100.00  E-value=3.6e-46  Score=330.22  Aligned_cols=192  Identities=22%  Similarity=0.311  Sum_probs=161.8

Q ss_pred             ccccccccHHHHHHhhCCCCCCcccccchhhhhccCCCCCCCCcccccCCCCcccccCCCCchHHHHHHHHHHHHhCCC-
Q 027582            2 VKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYH-   80 (221)
Q Consensus         2 ~~l~r~~t~k~~~~~~g~~~~~~~g~l~YP~lqaa~~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~~laR~ia~~~n~~-   80 (221)
                      .++.|++|++++.+   +.++.|+|+|+||+||||        |||.|++|   +||||+||+||+|||||||+|||+. 
T Consensus       100 ~~l~r~~~~k~~~~---~~~~~~~g~l~YP~lQaA--------DIl~~~~d---~vpvG~DQ~~h~eltRdia~r~n~~~  165 (326)
T d1i6la_         100 GELERMTQFKEKSA---GKEAVSAGLLTYPPLMAA--------DILLYNTD---IVPVGEDQKQHIELTRDLAERFNKRY  165 (326)
T ss_dssp             HHHHTCHHHHHHHT---TCSSCCHHHHTHHHHHHH--------HHHTTTCS---EEECCGGGHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhcccchhhcc---ccccCCccccccccccch--------hHHhcCcc---ccccccchHHHHHHHHHHHHHhhhcc
Confidence            46778888887654   457789999999999999        99999995   7999999999999999999999962 


Q ss_pred             -----Cc--ccc-ccCcccCCCCCCCCcCCCCCC--CceecCCCHHHHHHHHhhccccCCcchhhhhhhcCCCccchhHH
Q 027582           81 -----KP--ALI-ESSFFPALQGETGKMSASDPN--SAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPV  150 (221)
Q Consensus        81 -----~p--~~l-~~~~lp~L~g~~~KMSkS~~~--s~I~L~D~p~~I~~KI~k~A~td~~~~~~~~~~~~~~p~v~~~~  150 (221)
                           .|  .+. .+++++++.++.+|||||++|  ++|+|+|+|++|++||++ |+||+...++  ++.+++|++++++
T Consensus       166 ~~~~~~~~~~i~~~~~~~~~~~d~~~kmskS~~~~~~~I~l~D~~~~i~kKI~~-a~td~~~~~~--~~~~~~p~~~~l~  242 (326)
T d1i6la_         166 GELFTIPEARIPKVGARIMSLVDPTKKMSKSDPNPKAYITLLDDAKTIEKKIKS-AVTDSEGTIR--YDKEAKPGISNLL  242 (326)
T ss_dssp             CSCCCCCEEECCSSSSSCBCSSCTTSBCCTTCSCGGGCCBTTCCHHHHHHHHHH-CCCCSSCCCC--CCTTTCHHHHHHH
T ss_pred             CCcccccccccccccceeeecCCccccccccCCCccceeeccCCHHHHHHHHHh-hhccccCCcc--ccccCCCCccHHH
Confidence                 12  121 235556655556899999864  689999999999999999 9999976543  5667999999999


Q ss_pred             HHHhhhcCChHhHHHHHHHHhcCCCChHHHHHHHHHHHHHHhHHHHHHHHHHhHH-HHHHHHhcC
Q 027582          151 KYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDE-MVDAFMAVR  214 (221)
Q Consensus       151 ~~l~~~~~~~~~~eel~~~y~~g~~~~~~lK~~lae~l~~~l~pire~~~~~~~~-~l~~il~~~  214 (221)
                      .++..++  +.+.+++..+|. | .++++||+.|++.|+++|+||||||+++.++ +|+++|.++
T Consensus       243 ~i~~~~~--~~~~~e~~~~~~-~-~~~gdlK~~lae~i~~~L~PiRer~~~l~~~~~l~~iL~~G  303 (326)
T d1i6la_         243 NIYSTLS--GQSIEELERQYE-G-KGYGVFKADLAQVVIETLRPIQERYHHWMESEELDRVLDEG  303 (326)
T ss_dssp             HHHHHHH--CCCHHHHHHHTT-T-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTHHHHHHHHH
T ss_pred             HHHHHcC--CCcHHHHHHHhc-C-CCHHHHHHHHHHHHHHHhHHHHHHHHHHhCCHHHHHHHHHH
Confidence            9999984  457888988886 4 6899999999999999999999999999876 999999875

>d1n3la_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Tyrosyl-tRNA synthetase (TyrRS)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.7e-41  Score=300.12  Aligned_cols=188  Identities=20%  Similarity=0.254  Sum_probs=148.3

Q ss_pred             cccccccHHHHHHhh----CCCCCCcccccchhhhhccCCCCCCCCcccccCCCCcccccCCCCchHHHHHHHHHHHHhC
Q 027582            3 KVAKCVTYNKVVGIF----GFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIG   78 (221)
Q Consensus         3 ~l~r~~t~k~~~~~~----g~~~~~~~g~l~YP~lqaa~~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~~laR~ia~~~n   78 (221)
                      ++++.++..+..+.+    +..++.++|+|+||+||||        |||.+++|   +||||.||+||+++||++|+|||
T Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~f~YP~lQaa--------Dil~~~ad---~v~~G~DQ~~~i~l~rd~a~r~~  200 (339)
T d1n3la_         132 RLSSVVTQHDSKKAGAEVVKQVEHPLLSGLLYPGLQAL--------DEEYLKVD---AQFGGIDQRKIFTFAEKYLPALG  200 (339)
T ss_dssp             HHHTTSCHHHHHHHTTTTSCCCSSCCHHHHHHHHHHHH--------HHHHTTCS---EEEEEGGGHHHHHHHHHHGGGGT
T ss_pred             hHHHHHHHHHHHHHHHHHhccCCCCccccccccHHHHH--------HHHhccCC---ccccchhHHHHHHHHHHHHhhhc
Confidence            456677777666543    3456789999999999999        99999994   79999999999999999999999


Q ss_pred             CCCccccccCcccCCCCCCCCcCCCCCCCceecCCCHHHHHHHHhhccccCCcchhhhhhhcCCCccchh----HHHHHh
Q 027582           79 YHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDI----PVKYLS  154 (221)
Q Consensus        79 ~~~p~~l~~~~lp~L~g~~~KMSkS~~~s~I~L~D~p~~I~~KI~k~A~td~~~~~~~~~~~~~~p~v~~----~~~~l~  154 (221)
                      .++|..++++++|||+|  .|||||+++|+|+|+|+|++|++||++ |+||++..       .+||..++    +|.++.
T Consensus       201 ~~~~~~l~~pll~~l~g--~kmsks~~~~~I~l~D~~~~I~kKI~~-a~td~~~~-------~~~~~~~~~~~~~~~~~~  270 (339)
T d1n3la_         201 YSKRVHLMNPMVPGLTG--SKMSSSEEESKIDLLDRKEDVKKKLKK-AFCEPGNV-------ENNGVLSFIKHVLFPLKS  270 (339)
T ss_dssp             CCCCEEEEECCCCCSSC--C-------CCSCBTTCCHHHHHHHHHT-CCCCTTCC-------SSCHHHHHHHHTTGGGTT
T ss_pred             cCcceeeeecccccccc--ccccccchhhcccccCCHHHHHHHHhh-ccCCCCCc-------ccCccccchhhhccchhh
Confidence            99999999999999999  599999999999999999999999999 99998743       35554432    122221


Q ss_pred             hhc-C---------ChHhHHHHHHHHhcCCCChHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhcC
Q 027582          155 FFL-E---------DDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVR  214 (221)
Q Consensus       155 ~~~-~---------~~~~~eel~~~y~~g~~~~~~lK~~lae~l~~~l~pire~~~~~~~~~l~~il~~~  214 (221)
                      .+. .         ...++++++++|.+|+++++++|++||++|+++|+||||+|+   +.++++++.++
T Consensus       271 ~~~~~~~~~~~~~~~~~~~~el~~~y~~g~l~~~dlK~~la~~i~~~l~pire~~~---~~e~~~l~~~~  337 (339)
T d1n3la_         271 EFVILRDEKWGGNKTYTAYVDLEKDFAAEVVHPGDLKNSVEVALNKLLDPIREKFN---TPALKKLASAA  337 (339)
T ss_dssp             CEEECCCGGGTCCEEESSHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHTT---SHHHHHHHHHH
T ss_pred             ccccccHHHhcCCCCcCCHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHhC---CHHHHHHHhcc
Confidence            111 0         135689999999999999999999999999999999999985   23677777654

>d1j1ua_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Tyrosyl-tRNA synthetase (TyrRS)
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=100.00  E-value=8.7e-40  Score=286.96  Aligned_cols=171  Identities=21%  Similarity=0.288  Sum_probs=136.2

Q ss_pred             cccccccHHHHHHhhCC----CCCCcccccchhhhhccCCCCCCCCcccccCCCCcccccCCCCchHHHHHHHHHHHHhC
Q 027582            3 KVAKCVTYNKVVGIFGF----TGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIG   78 (221)
Q Consensus         3 ~l~r~~t~k~~~~~~g~----~~~~~~g~l~YP~lqaa~~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~~laR~ia~~~n   78 (221)
                      ++++.++++++.+...+    .++.++|+|+||+||||        ||+.+++   ++||||.||++|++++|+++++  
T Consensus       120 ~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~YP~lQaa--------Dil~~~~---~~~~~G~DQ~~~~~l~rdl~~~--  186 (306)
T d1j1ua_         120 RLALKTTLKRARRSMELIAREDENPKVAEVIYPIMQVN--------DIHYLGV---DVAVGGMEQRKIHMLARELLPK--  186 (306)
T ss_dssp             HHHHHSCHHHHHHHTTTTSCCCSSCCTHHHHHHHHHHH--------HHHHHTC---SEEEEEGGGHHHHHHHHHHSSS--
T ss_pred             hhhhhhhhhhhhhhhhhhhhhhhccccccccccchhhc--------chhhcCc---ceeccchhhHHHHHHhhhcccc--
Confidence            46778888888775432    46789999999999999        9999999   4799999999999999999984  


Q ss_pred             CCCccccccCcccCCCCCCCCcCCCCCCCceecCCCHHHHHHHHhhccccCCcchhhhhhhcCCCccchhHHHHHh----
Q 027582           79 YHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLS----  154 (221)
Q Consensus        79 ~~~p~~l~~~~lp~L~g~~~KMSkS~~~s~I~L~D~p~~I~~KI~k~A~td~~~~~~~~~~~~~~p~v~~~~~~l~----  154 (221)
                        +|.++++++||||+|. +|||||.+ |+|+|+|+|++|++||++ |+||++..       +++|.......++.    
T Consensus       187 --~~~~~~~~~l~gldG~-~KMSKS~~-n~I~L~D~~e~I~~KI~~-a~td~~~~-------~~~p~~~~~~~~~~~~~~  254 (306)
T d1j1ua_         187 --KVVCIHNPVLTGLDGE-GKMSSSKG-NFIAVDDSPEEIRAKIKK-AYCPAGVV-------EGNPIMEIAKYFLEYPLT  254 (306)
T ss_dssp             --CCEEEEECCCCCTTCC-C--------CSCBTTCCHHHHHHHHHH-SCCCTTCC-------TTCHHHHHHHHTCCSSEE
T ss_pred             --cceecccccccCcccc-cccccccc-cccccCCCHHHHHHHHhh-eeccCCcc-------cCCCchHHHHHhhcccHh
Confidence              6788889999999995 79999965 599999999999999999 99998753       35664443222211    


Q ss_pred             ------hhcC-ChHhHHHHHHHHhcCCCChHHHHHHHHHHHHHHhHHHHHH
Q 027582          155 ------FFLE-DDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVA  198 (221)
Q Consensus       155 ------~~~~-~~~~~eel~~~y~~g~~~~~~lK~~lae~l~~~l~pire~  198 (221)
                            +... +..+++++++.|++|+++|+++|+.||+.|+++|+|||||
T Consensus       255 ~~~~~~~~~~~~~~~~~el~~~~~~g~l~~~~~K~~lae~i~~~l~pirer  305 (306)
T d1j1ua_         255 IKRPEKFGGDLTVNSYEELESLFKNKELHPMDLKNAVAEELIKILEPIRKR  305 (306)
T ss_dssp             ECCCGGGTCCEEESSHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             hccHHHHhccCChhhHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhc
Confidence                  1110 3468999999999999999999999999999999999997

>d1h3fa1 c.26.1.1 (A:5-347) Tyrosyl-tRNA synthetase (TyrRS) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Tyrosyl-tRNA synthetase (TyrRS)
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=1.8e-33  Score=250.03  Aligned_cols=139  Identities=19%  Similarity=0.155  Sum_probs=117.8

Q ss_pred             CCCCCcccccchhhhhccCCCCCCCCcccccCCCCcccccCCCCchHHHHHHHHHHHHhCCCCccccccCcccCCCCCCC
Q 027582           19 FTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETG   98 (221)
Q Consensus        19 ~~~~~~~g~l~YP~lqaa~~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~~laR~ia~~~n~~~p~~l~~~~lp~L~g~~~   98 (221)
                      ...+.++|+|+||+||||        ||+.+++   ++||||.||+||+++||++|+|||+.+|..+++++||||+|. +
T Consensus       160 ~~~~~~~~~f~YP~lQaa--------Di~~l~~---~~vp~G~DQ~~~i~l~Rdla~r~~~~~~~~~~~p~L~gldG~-~  227 (343)
T d1h3fa1         160 AGIPISLHELLYPFAQAY--------DSVAIRA---DVEMGGTDQRFNLLVGREVQRAYGQSPQVCFLMPLLVGLDGR-E  227 (343)
T ss_dssp             TTCCCBGGGGTHHHHHHH--------HHHHHTC---SEEEEEGGGHHHHHHHHHHHHHTTCCCCEEEEECCCBCTTSS-S
T ss_pred             ccccccchhhhhHHHHhh--------hhhhhcc---cccccccchHHHHHHHHHHHhhcCccccceeecccccccccc-c
Confidence            345689999999999999        9999998   579999999999999999999999999999999999999994 6


Q ss_pred             CcCCCCCCCceecCCCHHHHHHHHhhccccCCcchhhhhhhcCCCccchhHHHHHhhhcCChHhHHHHHHHHhcCCCChH
Q 027582           99 KMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTG  178 (221)
Q Consensus        99 KMSkS~~~s~I~L~D~p~~I~~KI~k~A~td~~~~~~~~~~~~~~p~v~~~~~~l~~~~~~~~~~eel~~~y~~g~~~~~  178 (221)
                      |||||.+ |+|+|+|+|++|++||++ + +|+                 .+.+|+.+|+.  .+.+||++.++.   ++.
T Consensus       228 KMSKS~~-naI~L~dsp~~i~~Ki~~-~-~D~-----------------~v~~~~~~~t~--~~~~ei~~~~~~---~~~  282 (343)
T d1h3fa1         228 KMSKSLD-NYIGLTEPPEAMFKKLMR-V-PDP-----------------LLPSYFRLLTD--LEEEEIEALLKA---GPV  282 (343)
T ss_dssp             BCCGGGT-CCCBTTSCHHHHHHHHHT-S-CGG-----------------GHHHHHHHHCC--CCHHHHHHHHHH---CHH
T ss_pred             hhhcccc-cceeeechhHHHHHHHhc-C-Ccc-----------------chhhHHHHccC--CCHHHHHHHHHh---CCH
Confidence            9999976 599999999999999999 5 321                 23567777753  245666666654   588


Q ss_pred             HHHHHHHHHHHHHhHH
Q 027582          179 EVKQRLAKVLTELVER  194 (221)
Q Consensus       179 ~lK~~lae~l~~~l~p  194 (221)
                      ++|+.||+.|+..++.
T Consensus       283 ~~k~~La~~i~~~~~~  298 (343)
T d1h3fa1         283 PAHRVLARLLTAAYAL  298 (343)
T ss_dssp             HHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHcC
Confidence            9999999999887764

>d1jila_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Tyrosyl-tRNA synthetase (TyrRS)
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.86  E-value=3.5e-22  Score=175.62  Aligned_cols=162  Identities=15%  Similarity=0.164  Sum_probs=132.4

Q ss_pred             cccccccHHHHHHhhCC----CCCCcccccchhhhhccCCCCCCCCcccc----cCCCCcccccCCCCchHHHHHHHHHH
Q 027582            3 KVAKCVTYNKVVGIFGF----TGEDHIGKVSFPPVQAVPSFPSSFPHLFS----GKDHLRCLIPCAIDQDPYFRMTRDVA   74 (221)
Q Consensus         3 ~l~r~~t~k~~~~~~g~----~~~~~~g~l~YP~lqaa~~~~~~~~Dil~----~~ad~~~~vpvG~DQ~~h~~laR~ia   74 (221)
                      .+.+++|++++.++..+    ..+.++.+|+||+|||.        |++.    +++|   +..+|.||+.++.++|+++
T Consensus       138 ~~~~~~~v~~ml~~d~~~~R~~~~is~~Ef~YpllQ~~--------Df~~l~~~~~~~---iqiGGsDQ~~Ni~~Grdl~  206 (323)
T d1jila_         138 DYGKHVGVNYMLGKDSIQSRLEHGISYTEFTYTILQAI--------DFGHLNRELNCK---IQVGGSDQWGNITSGIELM  206 (323)
T ss_dssp             HTGGGCCHHHHHTCGGGHHHHTTTCCHHHHHHHHHHHH--------HHHHHHHHHCEE---EEEEEGGGHHHHHHHHHHH
T ss_pred             HHhhhhhhhHHHHhHHHHHHhcccccHhhHHHHHHHHH--------HHHHHHHHhhch---hhhhccccHHHhhhhhhhh
Confidence            35778888888764211    34689999999999999        9975    5664   5689999999999999999


Q ss_pred             HHh-CCCCccccccCcccCCCCCCCCcCCCCCCCceecCC---CHHHHHHHHhhccccCCcchhhhhhhcCCCccchhHH
Q 027582           75 PRI-GYHKPALIESSFFPALQGETGKMSASDPNSAIYVTD---SAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPV  150 (221)
Q Consensus        75 ~~~-n~~~p~~l~~~~lp~L~g~~~KMSkS~~~s~I~L~D---~p~~I~~KI~k~A~td~~~~~~~~~~~~~~p~v~~~~  150 (221)
                      +|+ |.+++.+++.|++.+.+|  +|||||.+| +|+|.+   +|.++++|+++ .      ++            +.+.
T Consensus       207 ~~~~~~~~~~~it~pLl~~~~G--~Km~KS~~n-~i~l~~~~tsP~~~y~k~~n-~------~D------------~~i~  264 (323)
T d1jila_         207 RRMYGQTDAYGLTIPLVTKSDG--KKFGKSESG-AVWLDAEKTSPYEFYQFWIN-Q------SD------------EDVI  264 (323)
T ss_dssp             HHHHCCCCCEEEEECCCBCTTS--CBTTBCSSS-BCBSSTTTSCHHHHHHHHHT-C------CH------------HHHH
T ss_pred             hhhcccccceEEecccccchhh--hhhhhcCCC-CeeeecccCChHHHHHHhhc-C------CH------------HHHH
Confidence            997 555666677899999988  799999875 999987   69999999999 3      11            3456


Q ss_pred             HHHhhhcC-ChHhHHHHHHHHhcCCCChHHHHHHHHHHHHHHhHHHHHH
Q 027582          151 KYLSFFLE-DDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVA  198 (221)
Q Consensus       151 ~~l~~~~~-~~~~~eel~~~y~~g~~~~~~lK~~lae~l~~~l~pire~  198 (221)
                      .|+.+|+. +.+++++|++.+..| .++.++|+.||+.|+.+++.-.+.
T Consensus       265 ~yl~~~T~l~~~ei~~l~~~~~~~-~~pr~~Kk~LA~ei~~~~HG~~~a  312 (323)
T d1jila_         265 KFLKYFTFLGKEEIDRLEQSKNEA-PHLREAQKTLAEEVTKFIHGEDAL  312 (323)
T ss_dssp             HHHHHHCCCCHHHHHHHHHHHHHC-GGGCHHHHHHHHHHHHHHHCHHHH
T ss_pred             HHHHHHhcCCHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHCCHHHH
Confidence            78888864 678899999999877 599999999999999999874433

>d2ts1a_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Bacillus stearothermophilus, nca 1503 [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Tyrosyl-tRNA synthetase (TyrRS)
species: Bacillus stearothermophilus, nca 1503 [TaxId: 1422]

Probab=99.78  E-value=3.5e-19  Score=155.98  Aligned_cols=164  Identities=15%  Similarity=0.149  Sum_probs=133.9

Q ss_pred             cccccccHHHHHHhh----CCCCCCcccccchhhhhccCCCCCCCCccccc----CCCCcccccCCCCchHHHHHHHHHH
Q 027582            3 KVAKCVTYNKVVGIF----GFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSG----KDHLRCLIPCAIDQDPYFRMTRDVA   74 (221)
Q Consensus         3 ~l~r~~t~k~~~~~~----g~~~~~~~g~l~YP~lqaa~~~~~~~~Dil~~----~ad~~~~vpvG~DQ~~h~~laR~ia   74 (221)
                      .+.+.+|++++.++.    ....+.++.+|+||+|||.        |.+.+    +++   +..+|.||+.++..+|++.
T Consensus       138 ~~g~~~tv~~ml~rd~v~~R~~~~is~~Ef~Y~llQay--------Df~~l~~~~~~~---~qiGGsDQ~gNi~~G~dli  206 (319)
T d2ts1a_         138 DVGKHFSVNYMMAKESVQSRIETGISFTEFSYMMLQAY--------DFLRLYETEGCR---LQIGGSDQWGNITAGLELI  206 (319)
T ss_dssp             HTGGGCCHHHHHTSHHHHTTTTTCCCHHHHHHHHHHHH--------HHHHHHHHHCEE---EEEEEGGGHHHHHHHHHHH
T ss_pred             HHccccchhhhhhhHHHHHhcccCcchhhhHHHHHHHH--------HHHHHhhccCCc---hhhccchhhhHHHHHHHHH
Confidence            367788888887642    1235689999999999999        99876    663   6799999999999999999


Q ss_pred             HHhCCC-CccccccCcccCCCCCCCCcCCCCCCCceecCC---CHHHHHHHHhhccccCCcchhhhhhhcCCCccchhHH
Q 027582           75 PRIGYH-KPALIESSFFPALQGETGKMSASDPNSAIYVTD---SAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPV  150 (221)
Q Consensus        75 ~~~n~~-~p~~l~~~~lp~L~g~~~KMSkS~~~s~I~L~D---~p~~I~~KI~k~A~td~~~~~~~~~~~~~~p~v~~~~  150 (221)
                      ++++-+ ....++.|.|++.+|  +|||||.+| +|+|++   +|.++++|+++ .      ++            +.+.
T Consensus       207 ~~~~~~~~~~~lT~PLL~~~~G--~K~~ks~~n-~i~l~~~~tsp~~~yq~~~n-~------~D------------~~v~  264 (319)
T d2ts1a_         207 RKTKGEARAFGLTIPLVTKADG--TKFGKTESG-TIWLDKEKTSPYEFYQFWIN-T------DD------------RDVI  264 (319)
T ss_dssp             HHHHC--CCEEEEECCCCCTTS--CCTTCCSSC-CCBSSTTTSCHHHHHHHHHT-C------CH------------HHHH
T ss_pred             HHhcccccceEeeccccccccc--ceeeecCCC-CcccccccCCHHHHHHHhcC-C------CH------------HHHH
Confidence            998544 445578899999998  699999865 899976   69999999999 2      11            3456


Q ss_pred             HHHhhhcC-ChHhHHHHHHHHhcCCCChHHHHHHHHHHHHHHhHHHHHHHH
Q 027582          151 KYLSFFLE-DDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARA  200 (221)
Q Consensus       151 ~~l~~~~~-~~~~~eel~~~y~~g~~~~~~lK~~lae~l~~~l~pire~~~  200 (221)
                      .|+.+|+. +.+++++|.+.+.+| -++.+.|+.||+.|+.+++.-.+..+
T Consensus       265 ~yl~~~T~~~~eeI~~i~~~~~~~-~~~r~~K~~LA~eit~l~HG~~~a~~  314 (319)
T d2ts1a_         265 RYLKYFTFLSKEEIEALEQELREA-PEKRAAQKTLAEEVTKLVHGEEALRQ  314 (319)
T ss_dssp             HHHHHHCCCCHHHHHHHHHHHHHC-TTSCHHHHHHHHHHHHHHHCHHHHHH
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHhCCHHHHHH
Confidence            78888874 678999999999888 59999999999999999988665443

>d1ffya3 c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Isoleucyl-tRNA synthetase (IleRS)
species: Staphylococcus aureus [TaxId: 1280]

Probab=95.39  E-value=0.0034  Score=54.99  Aligned_cols=59  Identities=27%  Similarity=0.151  Sum_probs=36.9

Q ss_pred             cccCCCCcccccCCCCchH---HHHHHHHHHHHhCCCCc-cccccCcccCCCCCCCCcCCCCCCCceecC
Q 027582           47 FSGKDHLRCLIPCAIDQDP---YFRMTRDVAPRIGYHKP-ALIESSFFPALQGETGKMSASDPNSAIYVT  112 (221)
Q Consensus        47 l~~~ad~~~~vpvG~DQ~~---h~~laR~ia~~~n~~~p-~~l~~~~lp~L~g~~~KMSkS~~~s~I~L~  112 (221)
                      +.+.+|   +...|.||..   |.++..-++ -+|.+.+ .++.+.++...+|  +|||||.+| .|...
T Consensus       351 ~~~P~d---~~~~G~Di~r~w~~~~~~~~~~-~~~~~Pfk~v~~hG~vld~~G--~KMSKS~GN-~I~p~  413 (450)
T d1ffya3         351 LSFPAD---MYLEGSDQYRGWFNSSITTSVA-TRGVSPYKFLLSHGFVMDGEG--KKMSKSLGN-VIVPD  413 (450)
T ss_dssp             CCSSBS---EEEEEGGGGTTHHHHHHHHHHH-HHSSCSBSEEEEECCEECTTS--CCCCSSSSC-CCCHH
T ss_pred             ccCCCc---ccccCcchhhHHHHHHHHHHHH-hcCCCCcceEEEcceEECCCC--CCCCCCCCC-CcCHH
Confidence            345555   4678999963   334444333 3444333 3445678877787  799999987 67543

>d1nzja_ c.26.1.1 (A:) Glutamyl-Q tRNA-Asp synthetase YadB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Glutamyl-Q tRNA-Asp synthetase YadB
species: Escherichia coli [TaxId: 562]

Probab=94.77  E-value=0.015  Score=47.83  Aligned_cols=68  Identities=16%  Similarity=0.097  Sum_probs=45.1

Q ss_pred             ccccCCCCchHHHHHHHHHHHHhCCCCccccccCcccCCCCCCCCcCCCCCCCceecCCCHHHHHHHHhh
Q 027582           55 CLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINK  124 (221)
Q Consensus        55 ~~vpvG~DQ~~h~~laR~ia~~~n~~~p~~l~~~~lp~L~g~~~KMSkS~~~s~I~L~D~p~~I~~KI~k  124 (221)
                      |+|.-|.|....-..=+.|.+.+|.+.|...|.+++.+.+|  +||||++....|.-.+.+.-+-+-++.
T Consensus       183 ThViRG~D~l~st~~Q~~L~~~lg~~~P~y~H~pli~~~~g--~KLSKr~~~~~i~~~~~~~~~~~~L~~  250 (286)
T d1nzja_         183 TEIVRGADLIEPTVRQISLYQLFGWKVPDYIHLPLALNPQG--AKLSKQNHAPALPKGDPRPVLIAALQF  250 (286)
T ss_dssp             CEEEEEGGGHHHHHHHHHHHHHHTCCCCEEEEECBCCC---------------CCCSSCCHHHHHHHHHH
T ss_pred             ceecccccccchHHHHHHHHHhhCCCccceeecceEEccCC--cccccccCccchhcCCccHHHHHHHHH
Confidence            78999999998888888889999999999999999988888  699999875566555666666655555

>d1ilea3 c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthetase (IleRS) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Isoleucyl-tRNA synthetase (IleRS)
species: Thermus thermophilus [TaxId: 274]

Probab=94.57  E-value=0.0068  Score=52.18  Aligned_cols=52  Identities=25%  Similarity=0.140  Sum_probs=33.4

Q ss_pred             cccCCCCch---HHHHHHHHHHHHhCCCCc-cccccCcccCCCCCCCCcCCCCCCCceec
Q 027582           56 LIPCAIDQD---PYFRMTRDVAPRIGYHKP-ALIESSFFPALQGETGKMSASDPNSAIYV  111 (221)
Q Consensus        56 ~vpvG~DQ~---~h~~laR~ia~~~n~~~p-~~l~~~~lp~L~g~~~KMSkS~~~s~I~L  111 (221)
                      ++..|+||.   .|..+.--++- +|...| .++.+.++..++|  +|||||.+| .|.+
T Consensus       358 ~~~~g~d~~~~~fh~l~~~~~l~-~~~~~~~~v~~hg~iL~~~G--~KMSKS~gn-~I~~  413 (452)
T d1ilea3         358 FIAEGIDQTRGWFNSLHQLGVML-FGSIAFKNVICHGLILDEKG--QKMSKSKGN-VVDP  413 (452)
T ss_dssp             BEEEEGGGGGTHHHHHHHHHHHH-HSSCSBSEEEEECCEECTTS--SCCCTTTTC-CCCH
T ss_pred             hheecCceechhhHHHHHhHHHH-cCCCCCCeEEEeeEEECCCC--cccCCCCCC-CcCH
Confidence            467788986   45555444443 443233 3445678777888  799999986 7754

>d1irxa2 c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Class I lysyl-tRNA synthetase
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=94.41  E-value=0.0064  Score=48.45  Aligned_cols=43  Identities=28%  Similarity=0.425  Sum_probs=20.8

Q ss_pred             HHHHHHHHhCCCCccccccCcccCCCCCCCCcCCCCCCCceecCC
Q 027582           69 MTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTD  113 (221)
Q Consensus        69 laR~ia~~~n~~~p~~l~~~~lp~L~g~~~KMSkS~~~s~I~L~D  113 (221)
                      ....+..-++...|.++++.+| .|+|..+|||||.+| .|.+.|
T Consensus       248 ~~~~~~~~~g~~~~~~~~~~~l-~l~ge~~KMSkrkGn-~I~~~d  290 (317)
T d1irxa2         248 GKEIIKEVYGKEAPLSLMYEFV-GIKGQKGKMSGSKGN-VILLSD  290 (317)
T ss_dssp             HHHHHHHHHCCCCCBCCEECCE-EESCC---------C-CCCHHH
T ss_pred             hhhhhhhhcCCCCcEEEEEEEE-EECCccccccCCCCc-cccHHH
Confidence            3444455577778887776543 356655799999986 776543

>d1ivsa4 c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase (ValRS) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Valyl-tRNA synthetase (ValRS)
species: Thermus thermophilus [TaxId: 274]

Probab=93.85  E-value=0.0071  Score=51.70  Aligned_cols=53  Identities=17%  Similarity=0.132  Sum_probs=30.8

Q ss_pred             cccCCCCchHHH---HHHHHHHHHhCCCCc--cccccCcccCCCCCCCCcCCCCCCCceecCC
Q 027582           56 LIPCAIDQDPYF---RMTRDVAPRIGYHKP--ALIESSFFPALQGETGKMSASDPNSAIYVTD  113 (221)
Q Consensus        56 ~vpvG~DQ~~h~---~laR~ia~~~n~~~p--~~l~~~~lp~L~g~~~KMSkS~~~s~I~L~D  113 (221)
                      +...|.|+..++   .++.-.+  +....|  .++.+.++...+|  +|||||.+| .|.+.|
T Consensus       331 i~~~G~Di~~~h~~~~~a~~~~--~~~~~p~~~v~~hg~~L~~~G--~KMSKS~Gn-~I~~~e  388 (425)
T d1ivsa4         331 VLVTGYDILFLWVSRMEVSGYH--FMGERPFKTVLLHGLVLDEKG--QKMSKSKGN-VIDPLE  388 (425)
T ss_dssp             CEEEEGGGTTTTHHHHHHHHHH--HSSSCSBSEEEEECCEECTTS--SBCBTTTTB-CCCHHH
T ss_pred             EEEEEehhhhHHHHHHHHHHHH--hcCCCccceEEEcceEECCCC--CCcCCCCCC-CcCHHH
Confidence            356799975543   2222222  222233  3344567666777  799999986 776543

>d1j09a2 c.26.1.1 (A:1-305) Glutamyl-tRNA synthetase (GluRS) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Glutamyl-tRNA synthetase (GluRS)
species: Thermus thermophilus [TaxId: 274]

Probab=92.97  E-value=0.021  Score=47.33  Aligned_cols=53  Identities=9%  Similarity=0.068  Sum_probs=45.3

Q ss_pred             ccccCCCCchHHHHHHHHHHHHhCCCCccccccCcccCCCCCCCCcCCCCCCCce
Q 027582           55 CLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAI  109 (221)
Q Consensus        55 ~~vpvG~DQ~~h~~laR~ia~~~n~~~p~~l~~~~lp~L~g~~~KMSkS~~~s~I  109 (221)
                      ++|.-|.|-..+-..=+-+.+.+|.+.|...+++.+...+|  +||||++...+|
T Consensus       201 thviRG~Dl~~~t~~q~~l~~~Lg~~~p~~~h~~l~~~~~g--~KLSKr~~~~tl  253 (305)
T d1j09a2         201 TDVIRAEEWLVSTPIHVLLYRAFGWEAPRFYHMPLLRNPDK--TKISKRKSHTSL  253 (305)
T ss_dssp             CEEEEEGGGGGGHHHHHHHHHHHTCCCCEEEEECCCBCTTS--CBCCTTTSCCBH
T ss_pred             ccccccccceeccHHHHHHHHhhcCCCCceeeecccccCcc--ccccccCCccCH
Confidence            68999999888877778888999999999999998889888  799999865433

>d2d5ba2 c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetRS) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Methionyl-tRNA synthetase (MetRS)
species: Thermus thermophilus [TaxId: 274]

Probab=92.94  E-value=0.024  Score=46.52  Aligned_cols=54  Identities=17%  Similarity=0.006  Sum_probs=32.8

Q ss_pred             ccCCCCchHHHHHHHHHHHH-hCC-CCccccccCcccCCCCCCCCcCCCCCCCceecCC
Q 027582           57 IPCAIDQDPYFRMTRDVAPR-IGY-HKPALIESSFFPALQGETGKMSASDPNSAIYVTD  113 (221)
Q Consensus        57 vpvG~DQ~~h~~laR~ia~~-~n~-~~p~~l~~~~lp~L~g~~~KMSkS~~~s~I~L~D  113 (221)
                      -..|.|+.......-..... .+. +.+.++.+.++-.++|  +|||||.+| .|.+.|
T Consensus       255 ~~~g~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~~~G--~KMSKS~Gn-~i~~~e  310 (348)
T d2d5ba2         255 HLIGKDILKPHAVFWPTMLKAAGIPMYRHLNVGGFLLGPDG--RKMSKTLGN-VVDPFA  310 (348)
T ss_dssp             EEEEGGGHHHHHTHHHHHHHHHTCCCCSEEEEECCEECTTS--SCCCTTTTC-CCCHHH
T ss_pred             eeehhhccchhhhhhhhhccccccCCCCEEEeCceEEcccC--CCCcCCCCc-ccCHHH
Confidence            45677776655443332221 222 3344555667778888  699999986 787654

>d1iq0a2 c.26.1.1 (A:97-466) Arginyl-tRNA synthetase (ArgRS) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Arginyl-tRNA synthetase (ArgRS)
species: Thermus thermophilus [TaxId: 274]

Probab=89.82  E-value=0.039  Score=46.86  Aligned_cols=65  Identities=15%  Similarity=0.156  Sum_probs=43.7

Q ss_pred             cccCCCCchHHHHHHHHHHHHhCCCCc----cccccCcccCCCCCCCCcCCCCCCCceecCCCHHHHHHHHhh
Q 027582           56 LIPCAIDQDPYFRMTRDVAPRIGYHKP----ALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINK  124 (221)
Q Consensus        56 ~vpvG~DQ~~h~~laR~ia~~~n~~~p----~~l~~~~lp~L~g~~~KMSkS~~~s~I~L~D~p~~I~~KI~k  124 (221)
                      +--+|.+|..|+.....+++.+|++..    .++...+|- ++|  +|||+..++ .|.|.|=-++..++.+.
T Consensus       254 iyVvd~~Q~~h~~~v~~~~~~~g~~~~~~~~~hv~~g~v~-~~g--~kMStR~G~-~v~l~dll~ea~~~a~~  322 (370)
T d1iq0a2         254 INVVDVRQSHPQALVRAALALAGYPALAEKAHHLAYETVL-LEG--RQMSGRKGL-AVSVDEVLEEATRRARA  322 (370)
T ss_dssp             EEEEESSSCCCHHHHHHHHHHTTCHHHHTTEEEEEECCEE-ETT--BCSCC-----CCBHHHHHHHHHHHHHH
T ss_pred             HHHHhccchHHHHHHHHHHHHhCCCchhhceeeEEEEEEe-cCC--ccccccCCC-eeEHHHHHHHHHHHHHH
Confidence            457899999999999999999998432    333344554 455  799999986 88887765555444444

>d1pfva2 c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthetase (MetRS) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Methionyl-tRNA synthetase (MetRS)
species: Escherichia coli [TaxId: 562]

Probab=86.66  E-value=0.096  Score=43.04  Aligned_cols=51  Identities=20%  Similarity=0.225  Sum_probs=28.2

Q ss_pred             ccCCCCchHHHHH-HHHHHHHhCCCCcc-ccccCcccCCCCCCCCcCCCCCCCceec
Q 027582           57 IPCAIDQDPYFRM-TRDVAPRIGYHKPA-LIESSFFPALQGETGKMSASDPNSAIYV  111 (221)
Q Consensus        57 vpvG~DQ~~h~~l-aR~ia~~~n~~~p~-~l~~~~lp~L~g~~~KMSkS~~~s~I~L  111 (221)
                      -.+|.|+..++.. ..-.+...+...+. ++.+.+|- ++|  +|||||.+| .|.+
T Consensus       253 h~~G~D~~~~h~~~~~~~~~a~~~~~~~~~~~~g~l~-~~G--~KMSKS~GN-~i~~  305 (350)
T d1pfva2         253 HFIGKDIVYFHSLFWPAMLEGSNFRKPSNLFVHGYVT-VNG--AKMSKSRGT-FIKA  305 (350)
T ss_dssp             EEEEGGGHHHHHTHHHHHHHHTTBCCCSEEEEECCEE-ETT--BSCCTTTTC-CCBH
T ss_pred             eccchhhHHHHHhhHHHHhhhcCCCccceEEecccEE-ECC--eEccCcCCC-CCCH
Confidence            3568887765532 12222223333332 33345554 677  799999986 7755

>d1f7ua2 c.26.1.1 (A:136-483) Arginyl-tRNA synthetase (ArgRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Arginyl-tRNA synthetase (ArgRS)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.16  E-value=0.17  Score=42.32  Aligned_cols=68  Identities=15%  Similarity=0.215  Sum_probs=48.8

Q ss_pred             CCCCcccccCCCCchHHHHHHHHHHHHhCCCCcccccc-CcccCCCCCCCCcCCCCCCCceecCCCHHHHHHHHhh
Q 027582           50 KDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIES-SFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINK  124 (221)
Q Consensus        50 ~ad~~~~vpvG~DQ~~h~~laR~ia~~~n~~~p~~l~~-~~lp~L~g~~~KMSkS~~~s~I~L~D~p~~I~~KI~k  124 (221)
                      +.|. .+-.+|.||..|+.-...+++.+|+..+..+.+ .+     |--.||||..++ .|.|.|=-+++.++++.
T Consensus       228 ~~D~-~I~V~g~dq~~~~~~l~~~l~~lg~~~~~~~~h~~~-----g~v~kMStR~G~-~i~l~dll~e~~~~a~~  296 (348)
T d1f7ua2         228 HFDK-MIYVIASQQDLHAAQFFEILKQMGFEWAKDLQHVNF-----GMVQGMSTRKGT-VVFLDNILEETKEKMHE  296 (348)
T ss_dssp             CCSE-EEEECCGGGHHHHHHHHHHHHHTTCGGGGGEEEECC-----CCEESCCGGGTC-CCBHHHHHHHHHHHHHH
T ss_pred             CCCE-EEEecccccchhhhhHHHHHHHhCCCcccceeeecC-----CccccccccCCC-ceEHHHHHHHHHHHHHH
Confidence            4553 345799999999999999999999855443322 22     222599999886 88888777776666655

>d1li5a2 c.26.1.1 (A:1-315) Cysteinyl-tRNA synthetase (CysRS) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Cysteinyl-tRNA synthetase (CysRS)
species: Escherichia coli [TaxId: 562]

Probab=83.27  E-value=0.28  Score=39.84  Aligned_cols=36  Identities=25%  Similarity=0.248  Sum_probs=23.7

Q ss_pred             cccCcccCCCCCCCCcCCCCCCCceecCC-----CHHHHHHHHhh
Q 027582           85 IESSFFPALQGETGKMSASDPNSAIYVTD-----SAKAIKNKINK  124 (221)
Q Consensus        85 l~~~~lp~L~g~~~KMSkS~~~s~I~L~D-----~p~~I~~KI~k  124 (221)
                      +++.+|. ++|  +|||||.+| .|.+.|     .|+.++=-+.+
T Consensus       255 ~~~~~l~-~~G--~KMSKs~Gn-~V~~~dlle~~g~D~lRy~lls  295 (315)
T d1li5a2         255 MHSGMVM-VDR--EKMSKSLGN-FFTVRDVLKYYDAETVRYFLMS  295 (315)
T ss_dssp             CCBCCEE-ETT--BCCCGGGTC-CCBHHHHHTTSCHHHHHHHHHS
T ss_pred             EEEEEEe-cCC--cEecCcCCC-cccHHHHHHhCCHHHHHHHHHc
Confidence            4444443 466  699999986 887766     66666655544

>d1rqga2 c.26.1.1 (A:1-138,A:174-396) Methionyl-tRNA synthetase (MetRS) {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Methionyl-tRNA synthetase (MetRS)
species: Pyrococcus abyssi [TaxId: 29292]

Probab=81.90  E-value=0.092  Score=43.00  Aligned_cols=17  Identities=47%  Similarity=0.585  Sum_probs=12.7

Q ss_pred             CCCCCCCcCCCCCCCceecC
Q 027582           93 LQGETGKMSASDPNSAIYVT  112 (221)
Q Consensus        93 L~g~~~KMSkS~~~s~I~L~  112 (221)
                      ++|  +|||||.+| .|.+.
T Consensus       305 ~~G--~KMSKSlGN-~I~~~  321 (361)
T d1rqga2         305 LEG--KKFSTSRNW-AIWVH  321 (361)
T ss_dssp             ETT--EECBTTTTB-SCBHH
T ss_pred             eCC--EecCCCCCC-CCCHH
Confidence            455  799999986 77653