Citrus Sinensis ID: 027786

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------22
Protein Sequence
MSTSASLSVTAGMPISTQHGSAGRGRAIVLSLPSNHTLPQGLGLVSAHSNLKGRRGSFKTAVASVDSNQISSSSVPPEKEANKYYFVVANAKFMLDEEEHFQELLFERLRNYGERSKEQDFWLVIEPKFLDKFPNITKRLRRPAVALVSTNGPWITFMKLRLDRVLSDSYEAGSLEEALASNPATLEFEKQEKWVAPYPKYEFGWWEAFLPTGSKGSKV
Secondary Structure (PSIPRED)
cccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccccccccccccccEEEEEEEccccccccccHHHHHHHHHHHHHHcccccccEEEEccHHHHcccHHHHHHcccccEEEEcccccHHHHHHHHccEEEEEEEccccHHHHHHccccccccccccccccccccccccccEEccccccccccc
Secondary Structure Prediction (SSPRO)
cccccEEEEEccccEcccccccccccEEEcccccccccccccccccccccccccccccccEEEEEcccccccccccccccccEEEEEEEcHHHcccccccHHHHHHHHHHHHHHccccccEEEEccHHHHHHHHHHHHHccccEEEEEEccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mstsaslsvtagmpistqhgsagrGRAIVLslpsnhtlpqglglvsahsnlkgrrgsfKTAVASvdsnqissssvppekeanKYYFVVANAKFMLDEEEHFQELLFERLRNYGERSKEQDFWLVIepkfldkfpnitkrlrrpavalvstngpwITFMKLRLDRVlsdsyeagsleealasnpatlefekqekwvapypkyefgwweaflptgskgskv
Flexible Loop (DISEMBL)
mstsaslsvtagmpistqhgsaGRGRAIVLSLPSNHTLPQGLGLVSAHSNLKGRRGSFKTavasvdsnqissssvppekeaNKYYFVVANAKFMLDEEEHFQELLFERLRNYGERSKEQDFWLVIEPKFLDkfpnitkrlrrpavalvstngpwitFMKLRLDRVLSDSYEAGSleealasnpatlefEKQEKWVAPYPKYEFGWWeaflptgskgskv
Low Complexity Region (SEG)
MSTSASLSVTAGMPISTQHGSAGRGRAIVLSLPSNHTLPQGLGLVSAHSNLKGRRGSFKTAvasvdsnqissssvPPEKEANKYYFVVANAKFMLDEEEHFQELLFERLRNYGERSKEQDFWLVIEPKFLDKFPNITKRLRRPAVALVSTNGPWITFMKLRLDRVLSDSYEAGSLEEALASNPATLEFEKQEKWVAPYPKYEFGWWEAFLPTGSKGSKV
Disordered region (IsUnstruct)
**********************************************************************************KYYFVVANAKFMLDEEEHFQELLFERLRNYGERSKEQDFWLVIEPKFLDKFPNITKRLRRPAVALVSTNGPWITFMKLRLDRVLSDSYEAGSL********ATLEFEKQEKWVAPYPKYEFGWWEAFLP********
Disordered Region (DISOPRED)
****AS**VTA***********************************************************************KYYFVVANAKFMLDEEEHFQELLFERLRNYGERSKEQDFWLVIEPKFLDKFPNITKRLRRPAVALVSTNGPWITFMKLRLDRVLSDSYEAGSLEEALASNPATLEFEKQEKWVAPYPKYEFGWWEAFL*********
Disordered Region (DISEMBL)
*********TAGMPISTQHGSAGRGRAIVLSLPSNHTLPQGLGLVSAHSNLKGRRGSFKTAVAS*************EKEANKYYFVVANAKFMLDEEEHFQELLFERLRNYGERSKEQDFWLVIEPKFLDKFPNITKRLRRPAVALVSTNGPWITFMKLRLDRVLSDSYEAGSLEEALASNPATLEFEKQEKWVAPYPKYEFGWWEAFLP********
Disordered Region (DISPRO)
******LSVTAGMPISTQ*GSAGRGRAIVLSLPSNHTLPQGLGLVSAHSNLKGRRGSFKTAVASVDS*****SS****KEANKYYFVVANAKFMLDEEEHFQELLFERLRNYGERSKEQDFWLVIEPKFLDKFPNITKRLRRPAVALVSTNGPWITFMKLRLDRVLSDSYEAGSLEEALASNPATLEFEKQEKWVAPYPKYEFGWWEAFLPT*******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSTSASLSVTAGMPISTQHGSAGRGRAIVLSLPSNHTLPQGLGLVSAHSNLKGRRGSFKTAVASVDSNQISSSSVPPEKEANKYYFVVANAKFMLDEEEHFQELLFERLRNYGERSKEQDFWLVIEPKFLDKFPNITKRLRRPAVALVSTNGPWITFMKLRLDRVLSDSYEAGSLEEALASNPATLEFEKQEKWVAPYPKYEFGWWEAFLPTGSKGSKV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	219	2.2.26 [Sep-21-2011]
P51204	108	Uncharacterized protein y	N/A	no	0.397	0.805	0.4	2e-09
P72777	133	Ycf54-like protein OS=Syn	N/A	no	0.410	0.676	0.462	2e-09
Q1XDT3	111	Uncharacterized protein y	N/A	no	0.397	0.783	0.366	3e-07
O19890	103	Uncharacterized protein y	N/A	no	0.424	0.902	0.306	8e-07

>sp|P51204|YCF54_PORPU Uncharacterized protein ycf54 OS=Porphyra purpurea GN=ycf54 PE=3 SV=1

 Score = 62.8 bits (151), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 36/90 (40%), Positives = 54/90 (60%), Gaps = 3/90 (3%)

Query: 84  YYFVVANAKFMLDEEEHFQELLFERLRNYGERSKEQDFWLVIEPKFLDKFPNITKRLRRP 143
           YYF +A+  F+L EE   +E+  ER+  Y   +KE DFWL+  PKFL+K   I  +   P
Sbjct: 4   YYFALASQNFLLSEEP-LEEVFRERINYYQSNNKEIDFWLIPNPKFLNKPAMIKFKNLVP 62

Query: 144 --AVALVSTNGPWITFMKLRLDRVLSDSYE 171
             A+A++STN  +I ++KLR+  V    +E
Sbjct: 63  NEAIAIISTNSIFINWLKLRIGYVCIGQFE 92

Porphyra purpurea (taxid: 2787)

>sp|P72777|YC54L_SYNY3 Ycf54-like protein OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=slr1780 PE=3 SV=1

 Score = 62.4 bits (150), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/93 (46%), Positives = 64/93 (68%), Gaps = 3/93 (3%)

Query: 84  YYFVVANAKFMLDEEEHFQELLFERLRNYGERSKEQDFWLVIEPKFLDKFPNITKRLRRP 143
           YY+ +A+ KF+L+EE   +E+L ER R+YGE++KE DFW VI+P FL+       + + P
Sbjct: 31  YYYALASQKFLLEEEPF-EEVLKERRRDYGEKNKEIDFWQVIQPAFLNAPELAEAKAKAP 89

Query: 144 A--VALVSTNGPWITFMKLRLDRVLSDSYEAGS 174
              VA+VSTN  +I ++KLRL+ VL+  +EA S
Sbjct: 90  EKNVAIVSTNKSFIVWVKLRLEYVLTGEFEAPS 122

Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)

>sp|Q1XDT3|YCF54_PORYE Uncharacterized protein ycf54 OS=Porphyra yezoensis GN=ycf54 PE=3 SV=1

 Score = 55.5 bits (132), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 53/90 (58%), Gaps = 3/90 (3%)

Query: 84  YYFVVANAKFMLDEEEHFQELLFERLRNYGERSKEQDFWLVIEPKFLDKFPNITKRLRRP 143
           YYF +A+  F+L  +E  +E+  ER+  Y   +K  DFWL+  P FL+K   I+ +   P
Sbjct: 4   YYFALASQNFLL-VQEPLEEVFRERVNYYQSNNKAIDFWLIPNPSFLEKPEMISFKNLVP 62

Query: 144 --AVALVSTNGPWITFMKLRLDRVLSDSYE 171
             AVA++STN  +I ++KLR+  +    +E
Sbjct: 63  KDAVAIISTNPIFINWLKLRIGYICIGQFE 92

Porphyra yezoensis (taxid: 2788)

>sp|O19890|YCF54_CYACA Uncharacterized protein ycf54 OS=Cyanidium caldarium GN=ycf54 PE=3 SV=1

 Score = 53.9 bits (128), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 54/98 (55%), Gaps = 5/98 (5%)

Query: 80  EANKYYFVVANAKFMLDEEEHFQELLFERLRNYGERSKEQDFWLVIEPKFLDKFPNITKR 139
           + N YY++ A+  F L +EE  +E+L E+  ++   +K  DFW+    K     PN  K 
Sbjct: 4   DYNTYYYIAASKHF-LTQEEPLEEILREKTEHFIANNKSIDFWIFDSTKLNAHSPNEIKT 62

Query: 140 LRR----PAVALVSTNGPWITFMKLRLDRVLSDSYEAG 173
           L++    P + ++S+N  +IT++KLRL  + +D  +  
Sbjct: 63  LQKTFFFPTILIISSNKKFITWLKLRLRYIFTDKIQLA 100

Cyanidium caldarium (taxid: 2771)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	219
255570865	217	conserved hypothetical protein [Ricinus	0.949	0.958	0.678	9e-75
147818338	226	hypothetical protein VITISV_031633 [Viti	0.885	0.858	0.741	7e-74
297745731	178	unnamed protein product [Vitis vinifera]	0.748	0.921	0.825	8e-72
356569974	234	PREDICTED: uncharacterized protein LOC10	0.812	0.760	0.727	1e-70
255646097	187	unknown [Glycine max]	0.703	0.823	0.824	3e-69
356539730	234	PREDICTED: uncharacterized protein LOC10	0.863	0.807	0.683	4e-69
255638297	234	unknown [Glycine max]	0.863	0.807	0.683	4e-69
217071170	216	unknown [Medicago truncatula]	0.817	0.828	0.708	6e-68
388498726	216	unknown [Medicago truncatula]	0.812	0.824	0.712	2e-67
388500648	236	unknown [Lotus japonicus]	0.821	0.762	0.697	5e-66

>gi|255570865|ref|XP_002526384.1| conserved hypothetical protein [Ricinus communis] gi|223534246|gb|EEF35960.1| conserved hypothetical protein [Ricinus communis]

 Score =  285 bits (729), Expect = 9e-75,   Method: Compositional matrix adjust.
 Identities = 150/221 (67%), Positives = 169/221 (76%), Gaps = 13/221 (5%)

Query: 6   SLSVTAGMPISTQHGSAGRGRAIVLSLPSNHTLPQGLGLVSA----HSNLKGRR-GSFKT 60
           SL+V + + ++         + +V  LPS H      GL  +    H +   R   SFKT
Sbjct: 3   SLAVGSSIAMAKVSTHCSYNKTLV-QLPSTH-----FGLKESQPPSHLSFPTRPIASFKT 56

Query: 61  AVASVDSNQISSSSV-PPEKE-ANKYYFVVANAKFMLDEEEHFQELLFERLRNYGERSKE 118
           AVA++DSN +SSSS  PP+KE  NKY+FVVANAKFMLDEEEHFQE LFERLR YGER+KE
Sbjct: 57  AVAAIDSNDLSSSSPNPPDKEQPNKYFFVVANAKFMLDEEEHFQEQLFERLRYYGERNKE 116

Query: 119 QDFWLVIEPKFLDKFPNITKRLRRPAVALVSTNGPWITFMKLRLDRVLSDSYEAGSLEEA 178
           QDFWLVIEPKFLDKFPNIT+RL+RPAVALVSTNGPWITFMKLRLDRVLSDSYEA ++EEA
Sbjct: 117 QDFWLVIEPKFLDKFPNITRRLKRPAVALVSTNGPWITFMKLRLDRVLSDSYEADTIEEA 176

Query: 179 LASNPATLEFEKQEKWVAPYPKYEFGWWEAFLPTGSKGSKV 219
           LASNP TL FEK   WVAPYPKYEFGWWE FLP  SK SKV
Sbjct: 177 LASNPVTLAFEKPANWVAPYPKYEFGWWEPFLPAASKESKV 217

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147818338|emb|CAN75840.1| hypothetical protein VITISV_031633 [Vitis vinifera]

 Score =  282 bits (721), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 146/197 (74%), Positives = 157/197 (79%), Gaps = 3/197 (1%)

Query: 26  RAIVLSLPSNHTLPQGLGLVSAHSNLKGRRG-SFKTAVASVDSNQISSSSVP--PEKEAN 82
           R +  S PS    P    L  + S     RG SFKTAVAS++S+Q+SSS      E+ + 
Sbjct: 30  RFLRPSFPSRFIGPNASPLAPSKSYTTPTRGASFKTAVASIESDQLSSSDPANMQEQGSG 89

Query: 83  KYYFVVANAKFMLDEEEHFQELLFERLRNYGERSKEQDFWLVIEPKFLDKFPNITKRLRR 142
           KYYFVVANAKFMLDEEEHF+ELLFERLR YGERSKEQDFWLVIEPKFLDKFPNITKRLRR
Sbjct: 90  KYYFVVANAKFMLDEEEHFKELLFERLRYYGERSKEQDFWLVIEPKFLDKFPNITKRLRR 149

Query: 143 PAVALVSTNGPWITFMKLRLDRVLSDSYEAGSLEEALASNPATLEFEKQEKWVAPYPKYE 202
           PAVALVSTNGPWITFMKLRLDRVLS+SYEA SLEEALASNP  +EFEK E WVAPYPKYE
Sbjct: 150 PAVALVSTNGPWITFMKLRLDRVLSESYEAVSLEEALASNPTDIEFEKPENWVAPYPKYE 209

Query: 203 FGWWEAFLPTGSKGSKV 219
           FGWWE FLP GS   KV
Sbjct: 210 FGWWEPFLPPGSVKPKV 226

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297745731|emb|CBI15787.3| unnamed protein product [Vitis vinifera]

 Score =  275 bits (704), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 137/166 (82%), Positives = 146/166 (87%), Gaps = 2/166 (1%)

Query: 56  GSFKTAVASVDSNQISSSSVP--PEKEANKYYFVVANAKFMLDEEEHFQELLFERLRNYG 113
            SFKTAVAS++S+Q+SSS      E+ + KYYFVVANAKFMLDEEEHF+ELLFERLR YG
Sbjct: 13  ASFKTAVASIESDQLSSSDPANMQEQGSGKYYFVVANAKFMLDEEEHFKELLFERLRYYG 72

Query: 114 ERSKEQDFWLVIEPKFLDKFPNITKRLRRPAVALVSTNGPWITFMKLRLDRVLSDSYEAG 173
           ERSKEQDFWLVIEPKFLDKFPNITKRLRRPAVALVSTNGPWITFMKLRLDRVLS+SYEA 
Sbjct: 73  ERSKEQDFWLVIEPKFLDKFPNITKRLRRPAVALVSTNGPWITFMKLRLDRVLSESYEAV 132

Query: 174 SLEEALASNPATLEFEKQEKWVAPYPKYEFGWWEAFLPTGSKGSKV 219
           SLEEALASNP  +EFEK E WVAPYPKYEFGWWE FLP GS   KV
Sbjct: 133 SLEEALASNPTDIEFEKPENWVAPYPKYEFGWWEPFLPPGSVKPKV 178

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356569974|ref|XP_003553168.1| PREDICTED: uncharacterized protein LOC100807863 [Glycine max]

 Score =  271 bits (694), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 136/187 (72%), Positives = 152/187 (81%), Gaps = 9/187 (4%)

Query: 34  SNHTLPQGLGLVSAHSNLKGRRGSFK---------TAVASVDSNQISSSSVPPEKEANKY 84
           SN T P  + LVS+         SFK         TAVASVDS++++SS  P + EA+KY
Sbjct: 40  SNRTHPLPMSLVSSTDQSFSFLSSFKEPTHARPFTTAVASVDSDKLNSSDPPTKNEASKY 99

Query: 85  YFVVANAKFMLDEEEHFQELLFERLRNYGERSKEQDFWLVIEPKFLDKFPNITKRLRRPA 144
           YF+VANAKFMLDEEEHFQE LFERLR +GER++EQDFWLVIEPKFLDKFPNITKRL+RPA
Sbjct: 100 YFLVANAKFMLDEEEHFQEQLFERLRLFGERNQEQDFWLVIEPKFLDKFPNITKRLKRPA 159

Query: 145 VALVSTNGPWITFMKLRLDRVLSDSYEAGSLEEALASNPATLEFEKQEKWVAPYPKYEFG 204
           VALVSTNGPWITFMKLRLDRVLSDS+EA SLEEALA NP  L+FEK EKWVAPYPKYEFG
Sbjct: 160 VALVSTNGPWITFMKLRLDRVLSDSFEAESLEEALAFNPTDLKFEKPEKWVAPYPKYEFG 219

Query: 205 WWEAFLP 211
           WW+ FLP
Sbjct: 220 WWKPFLP 226

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255646097|gb|ACU23535.1| unknown [Glycine max]

 Score =  267 bits (682), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 127/154 (82%), Positives = 141/154 (91%)

Query: 58  FKTAVASVDSNQISSSSVPPEKEANKYYFVVANAKFMLDEEEHFQELLFERLRNYGERSK 117
           F TAVASVDS++++SS  P + EA+KYYF+VANAKFMLDEEEHFQE LFERLR +GER++
Sbjct: 26  FTTAVASVDSDKLNSSDPPTKNEASKYYFLVANAKFMLDEEEHFQEQLFERLRLFGERNQ 85

Query: 118 EQDFWLVIEPKFLDKFPNITKRLRRPAVALVSTNGPWITFMKLRLDRVLSDSYEAGSLEE 177
           EQDFWLVIEPKFLDKFPNITKRL+RPAVALVSTNGPWITFMKLRLDRVLSDS+EA SLEE
Sbjct: 86  EQDFWLVIEPKFLDKFPNITKRLKRPAVALVSTNGPWITFMKLRLDRVLSDSFEAESLEE 145

Query: 178 ALASNPATLEFEKQEKWVAPYPKYEFGWWEAFLP 211
           ALA NP  L+FEK EKWVAPYPKYEFGWW+ FLP
Sbjct: 146 ALAFNPTDLKFEKPEKWVAPYPKYEFGWWKPFLP 179

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356539730|ref|XP_003538347.1| PREDICTED: uncharacterized protein LOC100778483 [Glycine max]

 Score =  266 bits (680), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 134/196 (68%), Positives = 153/196 (78%), Gaps = 7/196 (3%)

Query: 18  QHGSAGRGRAIVLSL--PSNHTLPQGLGLVSAHSNLKGRRGSFKTAVASVDSNQISSSSV 75
           +H  + R  ++ +SL  P+N    Q    +S+       R  F TAVASVDS+Q+ SS  
Sbjct: 36  RHSVSNRTHSLPMSLVSPTN----QSFTFLSSFKEPTHAR-PFTTAVASVDSDQLDSSDP 90

Query: 76  PPEKEANKYYFVVANAKFMLDEEEHFQELLFERLRNYGERSKEQDFWLVIEPKFLDKFPN 135
           P + EA KYYF+VANAKFMLDEEEHFQE LFERLR +GER++EQDFWLVIEPKFLDKF N
Sbjct: 91  PTKNEATKYYFLVANAKFMLDEEEHFQEQLFERLRLFGERNQEQDFWLVIEPKFLDKFSN 150

Query: 136 ITKRLRRPAVALVSTNGPWITFMKLRLDRVLSDSYEAGSLEEALASNPATLEFEKQEKWV 195
           ITKRL+RPAVALVSTNGPWITFMKLRLDRVLSD +EA SLEEALA NP  L+FEK EKWV
Sbjct: 151 ITKRLKRPAVALVSTNGPWITFMKLRLDRVLSDCFEAESLEEALAFNPTDLKFEKPEKWV 210

Query: 196 APYPKYEFGWWEAFLP 211
           APYPKYE GWW+ FLP
Sbjct: 211 APYPKYESGWWKPFLP 226

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255638297|gb|ACU19461.1| unknown [Glycine max]

 Score =  266 bits (680), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 134/196 (68%), Positives = 153/196 (78%), Gaps = 7/196 (3%)

Query: 18  QHGSAGRGRAIVLSL--PSNHTLPQGLGLVSAHSNLKGRRGSFKTAVASVDSNQISSSSV 75
           +H  + R  ++ +SL  P+N    Q    +S+       R  F TAVASVDS+Q+ SS  
Sbjct: 36  RHSVSNRTHSLPMSLVSPTN----QSFTFLSSFKEPTHAR-PFTTAVASVDSDQLDSSDP 90

Query: 76  PPEKEANKYYFVVANAKFMLDEEEHFQELLFERLRNYGERSKEQDFWLVIEPKFLDKFPN 135
           P + EA KYYF+VANAKFMLDEEEHFQE LFERLR +GER++EQDFWLVIEPKFLDKF N
Sbjct: 91  PTKSEATKYYFLVANAKFMLDEEEHFQEQLFERLRLFGERNQEQDFWLVIEPKFLDKFSN 150

Query: 136 ITKRLRRPAVALVSTNGPWITFMKLRLDRVLSDSYEAGSLEEALASNPATLEFEKQEKWV 195
           ITKRL+RPAVALVSTNGPWITFMKLRLDRVLSD +EA SLEEALA NP  L+FEK EKWV
Sbjct: 151 ITKRLKRPAVALVSTNGPWITFMKLRLDRVLSDCFEAESLEEALAFNPTDLKFEKPEKWV 210

Query: 196 APYPKYEFGWWEAFLP 211
           APYPKYE GWW+ FLP
Sbjct: 211 APYPKYESGWWKPFLP 226

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217071170|gb|ACJ83945.1| unknown [Medicago truncatula]

 Score =  262 bits (670), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 129/182 (70%), Positives = 145/182 (79%), Gaps = 3/182 (1%)

Query: 35  NHTLPQGLGLVSAHSNLKGRRGSFKTAVASVDSNQISSSSVPPEK-EANKYYFVVANAKF 93
            H+LP  + LVS  +    +   F TAV+SV S+ + SS  P  K E  KYYF+VANAKF
Sbjct: 33  THSLP--MSLVSPTNQNFKKHKPFITAVSSVQSDNVGSSDAPATKSEFTKYYFIVANAKF 90

Query: 94  MLDEEEHFQELLFERLRNYGERSKEQDFWLVIEPKFLDKFPNITKRLRRPAVALVSTNGP 153
           MLD+EEHFQE LFER R YGER+KEQD+WLVIEPKFLD FP+ TK+LRRPAVALVSTNGP
Sbjct: 91  MLDDEEHFQEQLFERQRYYGERNKEQDYWLVIEPKFLDSFPDFTKKLRRPAVALVSTNGP 150

Query: 154 WITFMKLRLDRVLSDSYEAGSLEEALASNPATLEFEKQEKWVAPYPKYEFGWWEAFLPTG 213
           WITFMKLRLDRVLS S+EA SLEEALAS+P  LEFEK  KWVAPYPKYEFGWWE FLP+G
Sbjct: 151 WITFMKLRLDRVLSGSFEADSLEEALASHPTKLEFEKPAKWVAPYPKYEFGWWETFLPSG 210

Query: 214 SK 215
            K
Sbjct: 211 QK 212

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388498726|gb|AFK37429.1| unknown [Medicago truncatula]

 Score =  261 bits (666), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 129/181 (71%), Positives = 144/181 (79%), Gaps = 3/181 (1%)

Query: 36  HTLPQGLGLVSAHSNLKGRRGSFKTAVASVDSNQISSSSVPPEK-EANKYYFVVANAKFM 94
           H+LP  + LVS  +    +   F TAV+SV S+ + SS  P  K E  KYYF+VANAKFM
Sbjct: 34  HSLP--MSLVSPTNQNFKKHKPFITAVSSVQSDNVGSSDAPATKSEFTKYYFIVANAKFM 91

Query: 95  LDEEEHFQELLFERLRNYGERSKEQDFWLVIEPKFLDKFPNITKRLRRPAVALVSTNGPW 154
           LD+EEHFQE LFER R YGER+KEQD+WLVIEPKFLD FP+ TK+LRRPAVALVSTNGPW
Sbjct: 92  LDDEEHFQEQLFERQRYYGERNKEQDYWLVIEPKFLDSFPDFTKKLRRPAVALVSTNGPW 151

Query: 155 ITFMKLRLDRVLSDSYEAGSLEEALASNPATLEFEKQEKWVAPYPKYEFGWWEAFLPTGS 214
           ITFMKLRLDRVLS S+EA SLEEALASNP  LEFEK  KWVAPYPKYE GWWE FLP+G 
Sbjct: 152 ITFMKLRLDRVLSGSFEADSLEEALASNPTKLEFEKPAKWVAPYPKYESGWWETFLPSGQ 211

Query: 215 K 215
           K
Sbjct: 212 K 212

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388500648|gb|AFK38390.1| unknown [Lotus japonicus]

 Score =  256 bits (653), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 127/182 (69%), Positives = 144/182 (79%), Gaps = 2/182 (1%)

Query: 31  SLPSNHTLP--QGLGLVSAHSNLKGRRGSFKTAVASVDSNQISSSSVPPEKEANKYYFVV 88
           SLP N   P  Q + L S+          F TAVA+VDS+ +SSS    +KEANKYYFV+
Sbjct: 48  SLPMNLVSPTNQNVTLFSSFKEPTPAAAPFTTAVAAVDSDNLSSSDPATKKEANKYYFVI 107

Query: 89  ANAKFMLDEEEHFQELLFERLRNYGERSKEQDFWLVIEPKFLDKFPNITKRLRRPAVALV 148
           ANAKFMLDEEEHF+E+LFERLR + ER  EQDFWLVIEPKFLD+FP ITKRL RPAVALV
Sbjct: 108 ANAKFMLDEEEHFREVLFERLRLFEERKVEQDFWLVIEPKFLDRFPGITKRLGRPAVALV 167

Query: 149 STNGPWITFMKLRLDRVLSDSYEAGSLEEALASNPATLEFEKQEKWVAPYPKYEFGWWEA 208
           STNGPWIT+MKLRLDRVLS+S+EA S+EEALASNP  L+F K +KWVAPYPKYE GWWE 
Sbjct: 168 STNGPWITYMKLRLDRVLSESFEAESIEEALASNPTNLDFGKPDKWVAPYPKYESGWWET 227

Query: 209 FL 210
           FL
Sbjct: 228 FL 229

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	219
TAIR|locus:2161218	211	EMB3143 "AT5G58250" [Arabidops	0.922	0.957	0.570	5.3e-56

TAIR|locus:2161218 EMB3143 "AT5G58250" [Arabidopsis thaliana (taxid:3702)]

 Score = 577 (208.2 bits), Expect = 5.3e-56, P = 5.3e-56
 Identities = 125/219 (57%), Positives = 147/219 (67%)

Query:     8 SVTAGMPISTQHGSAG-RGRAIVLS--LPSN----HTLPQGLGLVSAHSNLKGRRGSFKT 60
             SVT  + ++    +A  R +  ++S   P      H     L L S+H +      SFKT
Sbjct:     3 SVTGALTVAVPPTAAACRTKPFLISSSFPKQTKKLHLSSPSLSLPSSHFS-----SSFKT 57

Query:    61 AXXXXXXXXXXXXXXPPEKEANKYYFVVANAKFMLDEEEHFQELLFERLRNYGERSKEQD 120
             A                + E+ KY+F+VANAKFMLDEEEHFQE LFERLR +GER   QD
Sbjct:    58 AATSIEQQSSVN-----KGESTKYHFLVANAKFMLDEEEHFQEQLFERLRYFGERELVQD 112

Query:   121 FWLVIEPKFLDKFPNITKRLRRPAVALVSTNGPWITFMKLRLDRVLSDSYEAGSLEEALA 180
             FWLVIEPKFLD FP IT+RLRRPAVALVSTNG WITFMKLRLDRVL DS+EA SL+EALA
Sbjct:   113 FWLVIEPKFLDNFPKITQRLRRPAVALVSTNGTWITFMKLRLDRVLYDSFEATSLDEALA 172

Query:   181 SNPATLEFEKQEKWVAPYPKYEFGWWEAFLPTGSKGSKV 219
             SNP TLEF+K + WVAPYPKYE GWW+ FLP  ++ S V
Sbjct:   173 SNPTTLEFDKPKNWVAPYPKYEPGWWDTFLPKVTQESAV 211


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.316   0.132   0.395    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      219       205   0.00096  111 3  11 22  0.38    33
                                                     31  0.47    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  574 (61 KB)
  Total size of DFA:  170 KB (2101 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  17.09u 0.10s 17.19t   Elapsed:  00:00:01
  Total cpu time:  17.09u 0.10s 17.19t   Elapsed:  00:00:01
  Start:  Sat May 11 09:15:50 2013   End:  Sat May 11 09:15:51 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009579 "thylakoid" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	219
pfam10674	92	pfam10674, Ycf54, Protein of unknown function (DUF	5e-43

>gnl|CDD|204539 pfam10674, Ycf54, Protein of unknown function (DUF2488)

 Score =  139 bits (353), Expect = 5e-43
 Identities = 45/93 (48%), Positives = 63/93 (67%), Gaps = 3/93 (3%)

Query: 82  NKYYFVVANAKFMLDEEEHFQELLFERLRNYGERSKEQDFWLVIEPKFLDK--FPNITKR 139
             YYFV A+ KF+  EEE  +E+L ER R+Y E+ KE DFWLV +P FL+      +  +
Sbjct: 1   TTYYFVAASKKFLT-EEEPLEEVLRERRRHYKEKGKEIDFWLVPQPAFLEAPELAELKAK 59

Query: 140 LRRPAVALVSTNGPWITFMKLRLDRVLSDSYEA 172
           L +PA A+VST+  +IT++KLRL+ VL  S+EA
Sbjct: 60  LPQPAAAVVSTDKQFITWLKLRLEYVLKGSFEA 92

This protein is conserved in the green lineage and located in the chloroplast. Length = 92

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	219
PF10674	93	Ycf54: Protein of unknown function (DUF2488); Inte	100.0

>PF10674 Ycf54: Protein of unknown function (DUF2488); InterPro: IPR019616 This entry represents proteins annotated as Ycf54

Probab=100.00  E-value=1.3e-53  Score=329.96  Aligned_cols=91  Identities=56%  Similarity=0.967  Sum_probs=80.4

Q ss_pred             ceEEEEeecccccCcccchhHHHHHHHHHhhhccCccccEEEecCccccc--cChhhHhhcCCCcEEEEecCcchhhhhh
Q 027786           82 NKYYFVVANAKFMLDEEEHFQELLFERLRNYGERSKEQDFWLVIEPKFLD--KFPNITKRLRRPAVALVSTNGPWITFMK  159 (219)
Q Consensus        82 ttYYfvvAS~kFLl~eEEplEEVLrER~R~Y~E~~KeiDFWLV~~PaFLe--efp~ik~klpqPavAIVSTd~~fITwLK  159 (219)
                      |||||||||++||+ +|||||||||||+|||+|+||+||||||++|+|||  +|+++++||++|||||||||++||||||
T Consensus         1 ttYyf~~As~~Fl~-~eEpleEvLrER~r~y~e~~k~iDFWlv~~PaFLe~p~~~~~~~k~~~p~~AiVSTd~~fItwlK   79 (93)
T PF10674_consen    1 TTYYFVLASAKFLL-EEEPLEEVLRERTRHYKEKNKEIDFWLVKEPAFLEAPEFPEIKKKLPQPAAAIVSTDKQFITWLK   79 (93)
T ss_dssp             EEEEEEEEEHHHHH-CTS-HHHHHHHHHHHHHHCT----EEEEESBGGGGSGGGHHHHHHS-SSEEEEEES-HHHHHHHH
T ss_pred             CeEEEEEechhhhc-cCccHHHHHHHHHHHHHhcCCCccEEEecChhhcCccccHHHHHhCCCCcEEEEecChHHHHHHH
Confidence            69999999999998 66999999999999999999999999999999999  5999999999999999999999999999


Q ss_pred             hhcCeEEeeeeccC
Q 027786          160 LRLDRVLSDSYEAG  173 (219)
Q Consensus       160 LRLe~V~~G~FeA~  173 (219)
                      ||||||++|+|+|+
T Consensus        80 LRL~~V~~G~Feap   93 (93)
T PF10674_consen   80 LRLEYVLKGEFEAP   93 (93)
T ss_dssp             HHH-SSEEEEEECS
T ss_pred             HhhheEEEEEeeCC
Confidence            99999999999985

It is found encoded in the chloroplast genomes of algae, it is also found in plants and in the cyanobacteria. The function is unknown. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.; PDB: 3JSR_A 3HZE_D.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	219
3jsr_A	119	X-ray Structure Of All0216 Protein From Nostoc Sp.		7e-17
3hze_A	114	Crystal Structure Of Ycf54 Protein From Thermosynec		6e-16

>pdb|3JSR|A Chain A, X-ray Structure Of All0216 Protein From Nostoc Sp. Pcc 7120 At The Resolution 1.8a. Northeast Structural Genomics Consortium Target Nsr236 Length = 119

Iteration: 1
 Score = 83.6 bits (205), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 42/93 (45%), Positives = 67/93 (72%), Gaps = 3/93 (3%)
Query: 84  YYFVVANAKFMLDEEEHFQELLFERLRNYGERSKEQDFWLVIEPKFLD--KFPNITKRLR 141
           YY+V+A+ +F+L +EE  +E+L ER R+Y E+ KE DFWLV +P FL+  +F +I  +  
Sbjct: 6   YYYVLASRRFLL-QEEPIEEVLKERTRHYHEQEKEIDFWLVPQPAFLEAPEFADIKAKCP 64
Query: 142 RPAVALVSTNGPWITFMKLRLDRVLSDSYEAGS 174
           +PA A++STN  +IT++KLRL+ V++  + A S
Sbjct: 65  QPAAAIISTNSQFITWLKLRLEYVVTGEFSAPS 97

>pdb|3HZE|A Chain A, Crystal Structure Of Ycf54 Protein From Thermosynechococcus Elongatus, Northeast Structural Genomics Consortium Target Ter59 Length = 114

Iteration: 1
 Score = 80.5 bits (197), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 46/106 (43%), Positives = 67/106 (63%), Gaps = 3/106 (2%)
Query: 84  YYFVVANAKFMLDEEEHFQELLFERLRNYGERSKEQDFWLVIEPKFLD--KFPNITKRLR 141
           YY+++A+ KF L EEE  +E+  ER R+Y E+ KE DFWLV EP FL+  +F     R  
Sbjct: 4   YYYILASKKF-LTEEEPLEEVFRERQRHYREQGKEIDFWLVPEPAFLEQPQFAEQKARCP 62
Query: 142 RPAVALVSTNGPWITFMKLRLDRVLSDSYEAGSLEEALASNPATLE 187
           +PA A++STN  +I ++KLRL+ VL   + +  +   LAS  + LE
Sbjct: 63  QPAAAIISTNQQFIQWLKLRLEYVLXGQFTSEEVPNPLASLASVLE 108

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	219
3jsr_A	119	ALL0216 protein; structural genomics, PSI-2, prote	5e-41

>3jsr_A ALL0216 protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, NSR236, unknown funct; 1.80A {Nostoc SP} PDB: 3hze_A Length = 119

 Score =  134 bits (340), Expect = 5e-41
 Identities = 44/107 (41%), Positives = 71/107 (66%), Gaps = 5/107 (4%)

Query: 83  KYYFVVANAKFMLDEEEHFQELLFERLRNYGERSKEQDFWLVIEPKFLD--KFPNITKRL 140
            YY+V+A+ +F+L +EE  +E+L ER R+Y E+ KE DFWLV +P FL+  +F +I  + 
Sbjct: 5   TYYYVLASRRFLL-QEEPIEEVLKERTRHYHEQEKEIDFWLVPQPAFLEAPEFADIKAKC 63

Query: 141 RRPAVALVSTNGPWITFMKLRLDRVLSDSYEA--GSLEEALASNPAT 185
            +PA A++STN  +IT++KLRL+ V++  + A   ++   LAS    
Sbjct: 64  PQPAAAIISTNSQFITWLKLRLEYVVTGEFSAPSETIPNPLASLATA 110

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	219
3jsr_A	119	ALL0216 protein; structural genomics, PSI-2, prote	100.0

>3jsr_A ALL0216 protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, NSR236, unknown funct; 1.80A {Nostoc SP} PDB: 3hze_A

Probab=100.00  E-value=3.9e-58  Score=366.59  Aligned_cols=104  Identities=42%  Similarity=0.791  Sum_probs=100.2

Q ss_pred             ccceEEEEeecccccCcccchhHHHHHHHHHhhhccCccccEEEecCccccc--cChhhHhhcCCCcEEEEecCcchhhh
Q 027786           80 EANKYYFVVANAKFMLDEEEHFQELLFERLRNYGERSKEQDFWLVIEPKFLD--KFPNITKRLRRPAVALVSTNGPWITF  157 (219)
Q Consensus        80 ~~ttYYfvvAS~kFLl~eEEplEEVLrER~R~Y~E~~KeiDFWLV~~PaFLe--efp~ik~klpqPavAIVSTd~~fITw  157 (219)
                      .|+||||||||++||| +|||||||||||+|||+|+||+||||||+||+|||  +|++|++||++|||||||||++||||
T Consensus         2 km~tYyfv~AS~~Fll-eeEpleEvLrER~r~Y~e~~KeiDFWlV~~PaFLeap~~~~i~~kl~~P~~AIVSTd~~fItw   80 (119)
T 3jsr_A            2 KMQTYYYVLASRRFLL-QEEPIEEVLKERTRHYHEQEKEIDFWLVPQPAFLEAPEFADIKAKCPQPAAAIISTNSQFITW   80 (119)
T ss_dssp             CCEEEEEEEEEHHHHH-TTSCCHHHHHHHHHHHHHTTCCCCEEEEESBGGGGSGGGHHHHHHSCSSEEEEEESCHHHHHH
T ss_pred             CcceEEEEEechhhhc-cCccHHHHHHHHHHHHHhcCCCccEEEecChhhcCchhhHHHHHhCCCCcEEEEecChHHHHH
Confidence            5999999999999998 88999999999999999999999999999999999  69999999999999999999999999


Q ss_pred             hhhhcCeEEeeeeccC--ChHHHhhcCCC
Q 027786          158 MKLRLDRVLSDSYEAG--SLEEALASNPA  184 (219)
Q Consensus       158 LKLRLe~V~~G~FeA~--si~dpLaS~~~  184 (219)
                      ||||||||++|+|+|+  +|||||||+++
T Consensus        81 lKLRLe~V~~G~Feaps~~IpdpLas~~~  109 (119)
T 3jsr_A           81 LKLRLEYVVTGEFSAPSETIPNPLASLAT  109 (119)
T ss_dssp             HHHHHCSCEEEEEEESCSSCSCTTCBCC-
T ss_pred             HHHhhhheEEEEEecCcccccchhhhccc
Confidence            9999999999999995  59999999875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00