Citrus Sinensis ID: 027843

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------22
Protein Sequence
MASVSSPMASQLKSSFTSPVSRSLLTPRGISGSPFRVVPSKRSPRFLVKAIQSEKPTYQVIQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIAGPAGSLAAGGLVVILSICLTIYGIASFSEGEPSTAPGLTLTGRKKEPDQLQTADGWAKFTGGFFFGGISGVIWAYFLLYVLNLPYFVK
Secondary Structure (PSIPRED)
cccccccHHHHHHHcccccccccccccccccccccccccccccccHHHHHHcccccccEEEEcccccccccccccccccHHHHHHHHHccccccccccccHHHHHHHHHHccEEEccEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHHccccHHcccHHHHHHHHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHHHHHccccccccccccccccccccccccccccccEEEEEcccccccccccEEHHHcccEEcEEcHHHHcHHHHHHHHccccccccccHHHHHHHHHHHHHHHHcHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHcHHHcccccccccccccHHHHcccEEEcHHHHHHHHHHHHHcccccEEcc
Coil and Loop (DISEMBL)
masvsspmasqlkssftspvsrslltprgisgspfrvvpskrspRFLVKAIqsekptyqviqpingdpfigsletpitssplIAWYLsnlpayrtavSPLLRGVEVGLAHGfllvgpfvkagplrnteiagpagslaAGGLVVILSICLTIYgiasfsegepstapgltltgrkkepdqlqtadgwakftggfffggISGVIWAYFLLYVLNLPYFVK
Flexible Loop (DISEMBL)
masvsspmasqlkssftspvsrslltprgisgspfrvvpskrspRFLVKAiqsekptyqviQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIAGPAGSLAAGGLVVILSICLTIYGIasfsegepstapgltltgrKKEPDQLQTADGWAKFTGGFFFGGISGVIWAYFLLYVLNLPYFVK
Low Complexity Region (SEG)
MASVSSPMASQLKSSFTSPVSRSLLTPRGISGSPFRVVPSKRSPRFLVKAIQSEKPTYQVIQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIagpagslaagglVVILSICLTIYGIASFSEGEPSTAPGLTLTGRKKEPDQLQTADGWAKftggfffggISGVIWAYFLLYVLNLPYFVK
Disordered region (IsUnstruct)
*********************************************FLVKAIQSEKPTYQVIQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIAGPAGSLAAGGLVVILSICLTIYGIASF************************TADGWAKFTGGFFFGGISGVIWAYFLLYVLNLPYFV*
Disordered Region (DISOPRED)
************************L**************************QSEKPTYQVIQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIAGPAGSLAAGGLVVILSICLTIYGIASFS***************K***DQLQTADGWAKFTGGFFFGGISGVIWAYFLLYVLNLPYFVK
Disordered Region (DISEMBL)
*********************RSLLTPRGISGSPFRVVPSKRSPRFLVKAIQSEKPTYQVIQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIAGPAGSLAAGGLVVILSICLTIYGIASFSEGEPSTAPGLTLTGRKKEPDQLQTADGWAKFTGGFFFGGISGVIWAYFLLYVLNLPYFVK
Disordered Region (DISPRO)
************************L****ISGSPFRVVPSKRSPRFLVKAIQSEKPTYQVIQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIAGPAGSLAAGGLVVILSICLTIYGIASFSEGEPSTAPGLTLT*R*KEPDQLQTADGWAKFTGGFFFGGISGVIWAYFLLYVLNLPYFVK
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHi
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHi
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASVSSPMASQLKSSFTSPVSRSLLTPRGISGSPFRVVPSKRSPRFLVKAIQSEKPTYQVIQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIAGPAGSLAAGGLVVILSICLTIYGIASFSEGEPSTAPGLTLTGRKKEPDQLQTADGWAKFTGGFFFGGISGVIWAYFLLYVLNLPYFVK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	218	2.2.26 [Sep-21-2011]
Q41385	216	Photosystem I reaction ce	N/A	no	0.986	0.995	0.780	5e-81
Q9SUI4	219	Photosystem I reaction ce	yes	no	1.0	0.995	0.794	3e-80
Q39654	217	Photosystem I reaction ce	N/A	no	0.995	1.0	0.788	2e-78
P23993	209	Photosystem I reaction ce	N/A	no	0.926	0.966	0.716	3e-77
O78469	152	Photosystem I reaction ce	yes	no	0.623	0.894	0.48	6e-35
Q6B8P4	150	Photosystem I reaction ce	N/A	no	0.623	0.906	0.473	9e-35
P51222	153	Photosystem I reaction ce	N/A	no	0.623	0.888	0.473	4e-34
Q8DGB4	155	Photosystem I reaction ce	yes	no	0.628	0.883	0.433	4e-33
Q1XDR5	153	Photosystem I reaction ce	N/A	no	0.623	0.888	0.46	6e-33
A0T0M6	151	Photosystem I reaction ce	yes	no	0.642	0.927	0.486	1e-32

>sp|Q41385|PSAL_SPIOL Photosystem I reaction center subunit XI, chloroplastic OS=Spinacia oleracea GN=PSAL PE=1 SV=1

 Score =  300 bits (768), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 171/219 (78%), Positives = 193/219 (88%), Gaps = 4/219 (1%)

Query: 1   MASVSSPMASQLKSSFTSPVSRSLLTPRGISGSPFRVVPS-KRSPRFLVKAIQSEKPTYQ 59
           MA+ +SPMASQLKS FT+   ++L+ P+GISG   R  PS +R   F V+AI++EKPTYQ
Sbjct: 1   MAATTSPMASQLKSGFTT---KALVVPKGISGPALRGFPSPRRHTSFTVRAIKTEKPTYQ 57

Query: 60  VIQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFV 119
           VIQP+NGDPFIG LETP+TSSPLIAWYLSNLPAYRTAV+PLLRGVEVGLAHGFLLVGPFV
Sbjct: 58  VIQPLNGDPFIGGLETPVTSSPLIAWYLSNLPAYRTAVNPLLRGVEVGLAHGFLLVGPFV 117

Query: 120 KAGPLRNTEIAGPAGSLAAGGLVVILSICLTIYGIASFSEGEPSTAPGLTLTGRKKEPDQ 179
           KAGPLRNTE AG AGSLAA GLVVILS+CLT+YGIASF EGEPS AP LTLTGRKK+PDQ
Sbjct: 118 KAGPLRNTEYAGAAGSLAAAGLVVILSMCLTMYGIASFKEGEPSIAPALTLTGRKKQPDQ 177

Query: 180 LQTADGWAKFTGGFFFGGISGVIWAYFLLYVLNLPYFVK 218
           LQ+ADGWAKFTGGFFFGG+SGV WA FL+YVL+LPY+ K
Sbjct: 178 LQSADGWAKFTGGFFFGGVSGVTWACFLMYVLDLPYYFK 216

Spinacia oleracea (taxid: 3562)

>sp|Q9SUI4|PSAL_ARATH Photosystem I reaction center subunit XI, chloroplastic OS=Arabidopsis thaliana GN=PSAL PE=1 SV=2

 Score =  298 bits (762), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 174/219 (79%), Positives = 194/219 (88%), Gaps = 1/219 (0%)

Query: 1   MASVSSPMASQLKSSFTSPVS-RSLLTPRGISGSPFRVVPSKRSPRFLVKAIQSEKPTYQ 59
           MA+ +SPMASQL+SSF+S    + L  P+GISG+PF V P+KR   F V+A++S+K T+Q
Sbjct: 1   MAASASPMASQLRSSFSSASLSQRLAVPKGISGAPFGVSPTKRVSSFTVRAVKSDKTTFQ 60

Query: 60  VIQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFV 119
           V+QPINGDPFIGSLETP+TSSPLIAWYLSNLP YRTAV+PLLRGVEVGLAHGF LVGPFV
Sbjct: 61  VVQPINGDPFIGSLETPVTSSPLIAWYLSNLPGYRTAVNPLLRGVEVGLAHGFFLVGPFV 120

Query: 120 KAGPLRNTEIAGPAGSLAAGGLVVILSICLTIYGIASFSEGEPSTAPGLTLTGRKKEPDQ 179
           KAGPLRNT  AG AGSLAA GLVVILS+CLTIYGI+SF EGEPS AP LTLTGRKK+PDQ
Sbjct: 121 KAGPLRNTAYAGSAGSLAAAGLVVILSMCLTIYGISSFKEGEPSIAPSLTLTGRKKQPDQ 180

Query: 180 LQTADGWAKFTGGFFFGGISGVIWAYFLLYVLNLPYFVK 218
           LQTADGWAKFTGGFFFGGISGV WAYFLLYVL+LPYFVK
Sbjct: 181 LQTADGWAKFTGGFFFGGISGVTWAYFLLYVLDLPYFVK 219

Arabidopsis thaliana (taxid: 3702)

>sp|Q39654|PSAL_CUCSA Photosystem I reaction center subunit XI, chloroplastic OS=Cucumis sativus GN=PSAL PE=2 SV=1

 Score =  291 bits (746), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 172/218 (78%), Positives = 198/218 (90%), Gaps = 1/218 (0%)

Query: 1   MASVSSPMASQLKSSFTSPVSRSLLTPRGISGSPFRVVPSKRSPRFLVKAIQSEKPTYQV 60
           MA+ +SP ASQL SSF S  +R+L++P+G+S SP R +P+ R+  F ++AIQ++KPT+QV
Sbjct: 1   MATATSPTASQLSSSFASSNTRALISPKGLSASPLRRIPT-RTHSFTIRAIQADKPTFQV 59

Query: 61  IQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVK 120
           IQPINGDPFIGSLETP+TSSPLIAWYLSNLPAYRTAVSPLLRG+EVGLAHGF LVGPFVK
Sbjct: 60  IQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVK 119

Query: 121 AGPLRNTEIAGPAGSLAAGGLVVILSICLTIYGIASFSEGEPSTAPGLTLTGRKKEPDQL 180
           AGPLRNT  AG AGSLAAGGL+VILS+CLT+YG+ASF+EGEPSTAP LTLTGRKK PD L
Sbjct: 120 AGPLRNTAYAGGAGSLAAGGLIVILSVCLTMYGVASFNEGEPSTAPSLTLTGRKKTPDPL 179

Query: 181 QTADGWAKFTGGFFFGGISGVIWAYFLLYVLNLPYFVK 218
           QTADGWAKF+GGFFFGGISGVIWAYFLLYVL+LPY+VK
Sbjct: 180 QTADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYYVK 217

Cucumis sativus (taxid: 3659)

>sp|P23993|PSAL_HORVU Photosystem I reaction center subunit XI, chloroplastic OS=Hordeum vulgare GN=PSAL PE=1 SV=1

 Score =  287 bits (735), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 152/212 (71%), Positives = 178/212 (83%), Gaps = 10/212 (4%)

Query: 7   PMASQLKSSFTSPVSRSLLTPRGISGSPFRVVPSKRSPRFLVKAIQSEKPTYQVIQPING 66
           PMASQ+  S       +   PRG+SG+        R PRF+VKA++S+KPTYQV+QPING
Sbjct: 8   PMASQVMKS-----GLACSKPRGMSGASL-----TRRPRFVVKAVKSDKPTYQVVQPING 57

Query: 67  DPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRN 126
           DPFIGSLETP+TSSPL+AWYLSNLPAYRTAVSPLLRG+EVGLAHG+LLVGPF   GPLRN
Sbjct: 58  DPFIGSLETPVTSSPLVAWYLSNLPAYRTAVSPLLRGIEVGLAHGYLLVGPFALTGPLRN 117

Query: 127 TEIAGPAGSLAAGGLVVILSICLTIYGIASFSEGEPSTAPGLTLTGRKKEPDQLQTADGW 186
           T + G AG+L A GLV ILS+CLT+YG+ASF+EGEPSTAP LTLTGRKKE D+LQTA+GW
Sbjct: 118 TPVHGQAGTLGAIGLVSILSVCLTMYGVASFNEGEPSTAPVLTLTGRKKEADKLQTAEGW 177

Query: 187 AKFTGGFFFGGISGVIWAYFLLYVLNLPYFVK 218
           ++FTGGFFFGG+SG +WAYFLLYVL+LPYF K
Sbjct: 178 SQFTGGFFFGGVSGAVWAYFLLYVLDLPYFFK 209

Hordeum vulgare (taxid: 4513)

>sp|O78469|PSAL_GUITH Photosystem I reaction center subunit XI OS=Guillardia theta GN=psaL PE=3 SV=1

 Score =  147 bits (371), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 72/150 (48%), Positives = 98/150 (65%), Gaps = 14/150 (9%)

Query: 59  QVIQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPF 118
           Q ++P N DPF+G+L TPIT+S      LSNLPAYR  +SPLLRG+E+G+ HG+ LVGPF
Sbjct: 3   QFVKPYNDDPFVGNLATPITTSSFTRTLLSNLPAYRAGLSPLLRGLEIGMTHGYFLVGPF 62

Query: 119 VKAGPLRNTEIAGPAGSLAAGGLVVILSICLTIYGIASFSEGEPSTAPGLTLTGRKKEPD 178
            K GPLRN+E+A  AG  +A GL++I++ CL IYG+ SF+  +                +
Sbjct: 63  YKLGPLRNSEVALLAGVFSALGLIIIMAACLAIYGVVSFNTNDGG--------------E 108

Query: 179 QLQTADGWAKFTGGFFFGGISGVIWAYFLL 208
           QLQ+A GW +FT G+  G I G  +AY L+
Sbjct: 109 QLQSAKGWRQFTSGWLVGSIGGASFAYILI 138

Guillardia theta (taxid: 55529)

>sp|Q6B8P4|PSAL_GRATL Photosystem I reaction center subunit XI OS=Gracilaria tenuistipitata var. liui GN=psaL PE=3 SV=1

 Score =  146 bits (369), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 71/150 (47%), Positives = 97/150 (64%), Gaps = 14/150 (9%)

Query: 59  QVIQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPF 118
             IQ  N DPF+G+L TP+++S      L+NLPAYR  +SPLLRG+E+G+AHG+ LVGPF
Sbjct: 3   DFIQSYNNDPFLGNLSTPVSTSTFTKGLLNNLPAYRRGLSPLLRGLEIGMAHGYFLVGPF 62

Query: 119 VKAGPLRNTEIAGPAGSLAAGGLVVILSICLTIYGIASFSEGEPSTAPGLTLTGRKKEPD 178
            K GPLRNT++A  +G L+A GL++IL++CL++YG  SF               +    D
Sbjct: 63  DKLGPLRNTDVALLSGFLSAVGLIIILTVCLSMYGNVSFD--------------KDDAKD 108

Query: 179 QLQTADGWAKFTGGFFFGGISGVIWAYFLL 208
            LQT +GW +FT GF  G + G  +AY LL
Sbjct: 109 LLQTTEGWGQFTAGFLVGAVGGSGFAYLLL 138

Gracilaria tenuistipitata var. liui (taxid: 285951)

>sp|P51222|PSAL_PORPU Photosystem I reaction center subunit XI OS=Porphyra purpurea GN=psaL PE=3 SV=1

 Score =  144 bits (364), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 71/150 (47%), Positives = 98/150 (65%), Gaps = 14/150 (9%)

Query: 59  QVIQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPF 118
           + I+P N DPF+G+L TP+++S      L NLPAYR  +SPLLRG+E+G+AHG+ L+GPF
Sbjct: 3   EFIKPYNDDPFVGNLSTPVSTSSFSKGLLGNLPAYRRGLSPLLRGLEIGMAHGYFLIGPF 62

Query: 119 VKAGPLRNTEIAGPAGSLAAGGLVVILSICLTIYGIASFSEGEPSTAPGLTLTGRKKEPD 178
            K GPLR T++A  AG L++ GL++IL+ CL++YG  SF+              R    D
Sbjct: 63  DKLGPLRGTDVALLAGFLSSVGLIIILTTCLSMYGNVSFT--------------RSDSKD 108

Query: 179 QLQTADGWAKFTGGFFFGGISGVIWAYFLL 208
            LQTA+GW +FT GF  G + G  +AY LL
Sbjct: 109 PLQTAEGWGQFTAGFLVGAVGGSGFAYLLL 138

Porphyra purpurea (taxid: 2787)

>sp|Q8DGB4|PSAL_THEEB Photosystem I reaction center subunit XI OS=Thermosynechococcus elongatus (strain BP-1) GN=psaL PE=1 SV=1

 Score =  141 bits (355), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 65/150 (43%), Positives = 101/150 (67%), Gaps = 13/150 (8%)

Query: 59  QVIQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPF 118
           ++++P NGDPF+G L TPI+ S L+  ++ NLPAYR  +SP+LRG+EVG+AHG+ L+GP+
Sbjct: 4   ELVKPYNGDPFVGHLSTPISDSGLVKTFIGNLPAYRQGLSPILRGLEVGMAHGYFLIGPW 63

Query: 119 VKAGPLRNTEIAGPAGSLAAGGLVVILSICLTIYGIASFSEGEPSTAPGLTLTGRKKEPD 178
           VK GPLR++++A   G ++   L+++ + CL  YG+ SF +G  S+ P            
Sbjct: 64  VKLGPLRDSDVANLGGLISGIALILVATACLAAYGLVSFQKGGSSSDP------------ 111

Query: 179 QLQTADGWAKFTGGFFFGGISGVIWAYFLL 208
            L+T++GW++FT GFF G +     A+FLL
Sbjct: 112 -LKTSEGWSQFTAGFFVGAMGSAFVAFFLL 140

Thermosynechococcus elongatus (strain BP-1) (taxid: 197221)

>sp|Q1XDR5|PSAL_PORYE Photosystem I reaction center subunit XI OS=Porphyra yezoensis GN=psaL PE=3 SV=1

 Score =  140 bits (354), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 69/150 (46%), Positives = 97/150 (64%), Gaps = 14/150 (9%)

Query: 59  QVIQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPF 118
           + I+P N DPF+G+L TP+++S        NLPAYR  +SPLLRG+E+G+AHG+ L+GPF
Sbjct: 3   EFIKPYNDDPFVGNLSTPVSTSSFSKGTSRNLPAYRRGLSPLLRGLEIGMAHGYFLIGPF 62

Query: 119 VKAGPLRNTEIAGPAGSLAAGGLVVILSICLTIYGIASFSEGEPSTAPGLTLTGRKKEPD 178
            K GPLR T++A  AG L++ GL++IL+ CL++YG  SF+              R    D
Sbjct: 63  DKLGPLRGTDVALLAGFLSSVGLIIILTTCLSMYGNVSFT--------------RADSKD 108

Query: 179 QLQTADGWAKFTGGFFFGGISGVIWAYFLL 208
            LQT++GW +FT GF  G + G  +AY LL
Sbjct: 109 PLQTSEGWGQFTAGFLVGAVGGSGFAYLLL 138

Porphyra yezoensis (taxid: 2788)

>sp|A0T0M6|PSAL_PHATC Photosystem I reaction center subunit XI OS=Phaeodactylum tricornutum (strain CCAP 1055/1) GN=psaL PE=3 SV=1

 Score =  139 bits (350), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 73/150 (48%), Positives = 96/150 (64%), Gaps = 10/150 (6%)

Query: 59  QVIQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPF 118
             I+P N DPF+G L TPITSS +    L NLPAYR  ++PLLRG+E+GLAHG+ L+GPF
Sbjct: 3   NFIKPYNDDPFVGHLATPITSSAVTRAILQNLPAYRFGLTPLLRGLEIGLAHGYFLMGPF 62

Query: 119 VKAGPLRNTEIAGPAGSLAAGGLVVILSICLTIYGIASFSEGEPSTAPGLTLTGRKKEPD 178
           VK GPLR++EI   AG L+  GL+VIL++ LTIYG+A+F  G+  T        +    +
Sbjct: 63  VKLGPLRDSEIGLLAGFLSTVGLIVILTLGLTIYGVAAF--GQEKT--------QSSNEN 112

Query: 179 QLQTADGWAKFTGGFFFGGISGVIWAYFLL 208
            LQT   W +F GGFF G      +A+  L
Sbjct: 113 DLQTKKAWDQFKGGFFVGACGSAGFAFICL 142

Phaeodactylum tricornutum (strain CCAP 1055/1) (taxid: 556484)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	218
351726365	214	uncharacterized protein LOC100527240 [Gl	0.972	0.990	0.838	4e-92
255572702	218	Photosystem I reaction center subunit XI	1.0	1.0	0.880	4e-92
351724071	214	uncharacterized protein LOC100500317 [Gl	0.972	0.990	0.829	9e-92
225430989	221	PREDICTED: photosystem I reaction center	0.990	0.977	0.840	7e-91
224069709	216	predicted protein [Populus trichocarpa]	0.990	1.0	0.866	9e-89
224129342	216	hypothetical protein POPTRDRAFT_732598 [	0.990	1.0	0.834	2e-86
29468504	220	photosystem I subunit XI [Nicotiana atte	1.0	0.990	0.809	5e-85
195605028	219	photosystem I reaction center subunit XI	1.0	0.995	0.789	9e-85
357507747	214	Photosystem I reaction center subunit XI	0.972	0.990	0.801	9e-81
242056253	211	hypothetical protein SORBIDRAFT_03g00456	0.967	1.0	0.720	1e-79

>gi|351726365|ref|NP_001236868.1| uncharacterized protein LOC100527240 [Glycine max] gi|255631856|gb|ACU16295.1| unknown [Glycine max]

 Score =  342 bits (878), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 182/217 (83%), Positives = 200/217 (92%), Gaps = 5/217 (2%)

Query: 3   SVSSPMASQLKSSFTSPVSRSLLTPRGISGS-PFRVVPSKRSPRFLVKAIQSEKPTYQVI 61
           + +SPMASQLKS+FT    R+L+ P+G+S S P  +VPS+R   F VKAIQSEKPTYQVI
Sbjct: 2   AAASPMASQLKSTFT----RTLVAPKGLSASSPLHLVPSRRQFSFTVKAIQSEKPTYQVI 57

Query: 62  QPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKA 121
           QPINGDPFIGSLETP+TSSPLIAWYLSNLPAYRTAVSPLLRG+EVGLAHG+LLVGPFVKA
Sbjct: 58  QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGYLLVGPFVKA 117

Query: 122 GPLRNTEIAGPAGSLAAGGLVVILSICLTIYGIASFSEGEPSTAPGLTLTGRKKEPDQLQ 181
           GPLRNTEIAG AGSLAAGGLVVILS+CLTIYGI+SF+EG PSTAP LTLTGRKKEPDQLQ
Sbjct: 118 GPLRNTEIAGQAGSLAAGGLVVILSLCLTIYGISSFNEGAPSTAPSLTLTGRKKEPDQLQ 177

Query: 182 TADGWAKFTGGFFFGGISGVIWAYFLLYVLNLPYFVK 218
           TADGWAKFTGGFFFGGISGVIWAYFLLYVL+LPY++K
Sbjct: 178 TADGWAKFTGGFFFGGISGVIWAYFLLYVLDLPYYIK 214

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255572702|ref|XP_002527284.1| Photosystem I reaction center subunit XI, chloroplast precursor, putative [Ricinus communis] gi|223533377|gb|EEF35128.1| Photosystem I reaction center subunit XI, chloroplast precursor, putative [Ricinus communis]

 Score =  342 bits (878), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 192/218 (88%), Positives = 204/218 (93%)

Query: 1   MASVSSPMASQLKSSFTSPVSRSLLTPRGISGSPFRVVPSKRSPRFLVKAIQSEKPTYQV 60
           MA+ +SPMASQLKSSF S V+R L  PRGISG+PFRV P+KR+  F VKAIQSEKPT+QV
Sbjct: 1   MATTASPMASQLKSSFASSVTRGLGVPRGISGNPFRVSPAKRATSFTVKAIQSEKPTFQV 60

Query: 61  IQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVK 120
           IQPINGDPFIGSLETP+TSSPLIAWYLSNLPAYRTAVSPLLRG+EVGLAHGFLLVGPFVK
Sbjct: 61  IQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFLLVGPFVK 120

Query: 121 AGPLRNTEIAGPAGSLAAGGLVVILSICLTIYGIASFSEGEPSTAPGLTLTGRKKEPDQL 180
           AGPLRNTE AG AGSLAAGGLV ILSICLT+YG+ASF+EGEPSTAP LTLTGRKKEPDQL
Sbjct: 121 AGPLRNTEFAGAAGSLAAGGLVAILSICLTMYGVASFNEGEPSTAPSLTLTGRKKEPDQL 180

Query: 181 QTADGWAKFTGGFFFGGISGVIWAYFLLYVLNLPYFVK 218
           QTADGWAKFTGGFFFGGISGVIWAYFLLYVLNLPYFVK
Sbjct: 181 QTADGWAKFTGGFFFGGISGVIWAYFLLYVLNLPYFVK 218

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351724071|ref|NP_001236277.1| uncharacterized protein LOC100500317 [Glycine max] gi|255630008|gb|ACU15356.1| unknown [Glycine max]

 Score =  342 bits (876), Expect = 9e-92,   Method: Compositional matrix adjust.
 Identities = 180/217 (82%), Positives = 201/217 (92%), Gaps = 5/217 (2%)

Query: 3   SVSSPMASQLKSSFTSPVSRSLLTPRGISGS-PFRVVPSKRSPRFLVKAIQSEKPTYQVI 61
           + +SPMASQLKS+FT    ++L+ P+G+S S P  ++PSKR   F V+AIQSEKPTYQVI
Sbjct: 2   AAASPMASQLKSTFT----KTLVAPKGLSASSPLHLLPSKRQFSFTVRAIQSEKPTYQVI 57

Query: 62  QPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKA 121
           QPINGDPFIGSLETP+TSSPLIAWYLSNLPAYRTAVSPLLRG+EVGLAHG+LLVGPFVKA
Sbjct: 58  QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGYLLVGPFVKA 117

Query: 122 GPLRNTEIAGPAGSLAAGGLVVILSICLTIYGIASFSEGEPSTAPGLTLTGRKKEPDQLQ 181
           GPLRNTEIAG AGSLAAGGLVVILS+CLTIYGI+SF+EG+PSTAP LTLTGRKKEPDQLQ
Sbjct: 118 GPLRNTEIAGQAGSLAAGGLVVILSLCLTIYGISSFNEGDPSTAPSLTLTGRKKEPDQLQ 177

Query: 182 TADGWAKFTGGFFFGGISGVIWAYFLLYVLNLPYFVK 218
           TADGWAKFTGGFFFGGISGVIWAYFLLYVL+LPY++K
Sbjct: 178 TADGWAKFTGGFFFGGISGVIWAYFLLYVLDLPYYIK 214

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225430989|ref|XP_002278780.1| PREDICTED: photosystem I reaction center subunit XI, chloroplastic [Vitis vinifera] gi|147864470|emb|CAN82638.1| hypothetical protein VITISV_028819 [Vitis vinifera] gi|297735280|emb|CBI17642.3| unnamed protein product [Vitis vinifera]

 Score =  338 bits (868), Expect = 7e-91,   Method: Compositional matrix adjust.
 Identities = 185/220 (84%), Positives = 199/220 (90%), Gaps = 4/220 (1%)

Query: 3   SVSSPMASQLKSSFTSPV-SRSL--LTPRGISGSPFRVVPSKRSPR-FLVKAIQSEKPTY 58
           + +SPMASQLKSSFTSP  SR+L   +P+G+S SP R   S+R+P  F +KAIQSEKPTY
Sbjct: 2   ATASPMASQLKSSFTSPTTSRALPVASPKGLSASPLRPFSSRRAPSSFSIKAIQSEKPTY 61

Query: 59  QVIQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPF 118
           QVIQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSP+LRG+EVGLAHGFLLVGPF
Sbjct: 62  QVIQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPVLRGIEVGLAHGFLLVGPF 121

Query: 119 VKAGPLRNTEIAGPAGSLAAGGLVVILSICLTIYGIASFSEGEPSTAPGLTLTGRKKEPD 178
           VK GPLR+T IAGPAGSLAAGGLVVILSICLT+YGIASF EGEPS AP LTLTGR KEPD
Sbjct: 122 VKTGPLRDTPIAGPAGSLAAGGLVVILSICLTMYGIASFKEGEPSIAPSLTLTGRTKEPD 181

Query: 179 QLQTADGWAKFTGGFFFGGISGVIWAYFLLYVLNLPYFVK 218
           QLQ+ADGWAKFTGGFFFGGISGV WAYFLLYVLNLPYFVK
Sbjct: 182 QLQSADGWAKFTGGFFFGGISGVTWAYFLLYVLNLPYFVK 221

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224069709|ref|XP_002303024.1| predicted protein [Populus trichocarpa] gi|222844750|gb|EEE82297.1| predicted protein [Populus trichocarpa]

 Score =  332 bits (850), Expect = 9e-89,   Method: Compositional matrix adjust.
 Identities = 189/218 (86%), Positives = 204/218 (93%), Gaps = 2/218 (0%)

Query: 1   MASVSSPMASQLKSSFTSPVSRSLLTPRGISGSPFRVVPSKRSPRFLVKAIQSEKPTYQV 60
           MA+ +SPMASQLKSSF S ++R L+ P  ISG+PFRV PSKRS  F VKAIQSEKPTYQV
Sbjct: 1   MATAASPMASQLKSSFASSLARRLVIPTAISGAPFRVSPSKRS--FTVKAIQSEKPTYQV 58

Query: 61  IQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVK 120
           +QPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRG+EVGLAHGFLLVGPFVK
Sbjct: 59  VQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFLLVGPFVK 118

Query: 121 AGPLRNTEIAGPAGSLAAGGLVVILSICLTIYGIASFSEGEPSTAPGLTLTGRKKEPDQL 180
           AGPLRNTE AG AGSLAAGGLV ILSICLT+YG+ASF+EGEPSTAPGLTLTGRKKEPDQL
Sbjct: 119 AGPLRNTEYAGAAGSLAAGGLVAILSICLTMYGVASFTEGEPSTAPGLTLTGRKKEPDQL 178

Query: 181 QTADGWAKFTGGFFFGGISGVIWAYFLLYVLNLPYFVK 218
           QT+DGWAKF+GGFFFGGISGVIWAYFLLYV+NLPY+VK
Sbjct: 179 QTSDGWAKFSGGFFFGGISGVIWAYFLLYVINLPYYVK 216

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224129342|ref|XP_002320562.1| hypothetical protein POPTRDRAFT_732598 [Populus trichocarpa] gi|118487151|gb|ABK95404.1| unknown [Populus trichocarpa] gi|118488447|gb|ABK96038.1| unknown [Populus trichocarpa] gi|222861335|gb|EEE98877.1| hypothetical protein POPTRDRAFT_732598 [Populus trichocarpa]

 Score =  324 bits (830), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 182/218 (83%), Positives = 200/218 (91%), Gaps = 2/218 (0%)

Query: 1   MASVSSPMASQLKSSFTSPVSRSLLTPRGISGSPFRVVPSKRSPRFLVKAIQSEKPTYQV 60
           MA+ +SPMASQLKSS  S + R L+ PRGISG+PFRV P+KRS  F VKA+Q++KPTYQV
Sbjct: 1   MATTASPMASQLKSSLASSLGRRLVIPRGISGAPFRVSPNKRS--FTVKAVQADKPTYQV 58

Query: 61  IQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVK 120
           +QPINGDPFIGSLETP+TSSPLIAWYLSNLPAYRTAVSPLLRG+EVGLAHGFLLVGPFVK
Sbjct: 59  VQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFLLVGPFVK 118

Query: 121 AGPLRNTEIAGPAGSLAAGGLVVILSICLTIYGIASFSEGEPSTAPGLTLTGRKKEPDQL 180
           AGPLRNTE AG AGSLAAGGL+VILSICLT+YG ASF+EGEPS AP LTLTGRKK PDQL
Sbjct: 119 AGPLRNTEYAGAAGSLAAGGLIVILSICLTMYGAASFTEGEPSIAPSLTLTGRKKVPDQL 178

Query: 181 QTADGWAKFTGGFFFGGISGVIWAYFLLYVLNLPYFVK 218
           QTADGWAKFTGGFFFGGISGV WA+FLLYV+NLPY+VK
Sbjct: 179 QTADGWAKFTGGFFFGGISGVTWAFFLLYVINLPYYVK 216

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|29468504|gb|AAO85557.1| photosystem I subunit XI [Nicotiana attenuata]

 Score =  319 bits (817), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 178/220 (80%), Positives = 199/220 (90%), Gaps = 2/220 (0%)

Query: 1   MASVSSPMASQLKSSFTSPVSRS--LLTPRGISGSPFRVVPSKRSPRFLVKAIQSEKPTY 58
           MA+ +SPMASQLKS F S ++R   L+TP+GISGSPF++ PS R   F +KA+Q++KPTY
Sbjct: 1   MATAASPMASQLKSKFASSLTRGSGLVTPKGISGSPFKIFPSTRKSCFTIKAVQTDKPTY 60

Query: 59  QVIQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPF 118
           QVIQP+NGDPFIGSLETP+TSSPLIAWYLSNLPAYRTAV+PLLRGVEVGLAHGFLLVGPF
Sbjct: 61  QVIQPLNGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVNPLLRGVEVGLAHGFLLVGPF 120

Query: 119 VKAGPLRNTEIAGPAGSLAAGGLVVILSICLTIYGIASFSEGEPSTAPGLTLTGRKKEPD 178
           VKAGPLRNTE AG AGSLAA GLVVILS+CLTIYGI+SF EGE STAP LTLTGRKK PD
Sbjct: 121 VKAGPLRNTEYAGGAGSLAAAGLVVILSMCLTIYGISSFKEGEASTAPALTLTGRKKVPD 180

Query: 179 QLQTADGWAKFTGGFFFGGISGVIWAYFLLYVLNLPYFVK 218
           QLQTA+GW+KFTGGFFFGGISGV WAYFLLYVL+LPY+VK
Sbjct: 181 QLQTAEGWSKFTGGFFFGGISGVTWAYFLLYVLDLPYYVK 220

Source: Nicotiana attenuata

Species: Nicotiana attenuata

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|195605028|gb|ACG24344.1| photosystem I reaction center subunit XI [Zea mays]

 Score =  318 bits (815), Expect = 9e-85,   Method: Compositional matrix adjust.
 Identities = 173/219 (78%), Positives = 193/219 (88%), Gaps = 1/219 (0%)

Query: 1   MASVSSPMASQLKSSFTSPVS-RSLLTPRGISGSPFRVVPSKRSPRFLVKAIQSEKPTYQ 59
           MA+ +SPMASQL+SSF+S    + L  P+GISG+PF V P+KR   F V+A++S+K T+Q
Sbjct: 1   MAASASPMASQLRSSFSSASLSQRLAVPKGISGAPFGVSPTKRVSSFTVRAVKSDKTTFQ 60

Query: 60  VIQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFV 119
           V+QPINGDPFIGSLETP+TSSPLIAWYLSNLP YRTAV+PLLRGVEVGLAHGF LVGPFV
Sbjct: 61  VVQPINGDPFIGSLETPVTSSPLIAWYLSNLPGYRTAVNPLLRGVEVGLAHGFFLVGPFV 120

Query: 120 KAGPLRNTEIAGPAGSLAAGGLVVILSICLTIYGIASFSEGEPSTAPGLTLTGRKKEPDQ 179
           KAGPLRNT  AG AGSLAA GLVVILS+CLTIYGI+SF EGEPS AP LTLTGRKK+PDQ
Sbjct: 121 KAGPLRNTAYAGSAGSLAAAGLVVILSMCLTIYGISSFKEGEPSIAPSLTLTGRKKQPDQ 180

Query: 180 LQTADGWAKFTGGFFFGGISGVIWAYFLLYVLNLPYFVK 218
           LQTADGWAKFT GFFFGGISGV WAYFLLYVL+LPYFVK
Sbjct: 181 LQTADGWAKFTRGFFFGGISGVTWAYFLLYVLDLPYFVK 219

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357507747|ref|XP_003624162.1| Photosystem I reaction center subunit XI [Medicago truncatula] gi|87162581|gb|ABD28376.1| Photosystem I reaction centre, subunit XI PsaL [Medicago truncatula] gi|355499177|gb|AES80380.1| Photosystem I reaction center subunit XI [Medicago truncatula] gi|388516835|gb|AFK46479.1| unknown [Medicago truncatula]

 Score =  305 bits (781), Expect = 9e-81,   Method: Compositional matrix adjust.
 Identities = 174/217 (80%), Positives = 192/217 (88%), Gaps = 5/217 (2%)

Query: 3   SVSSPMASQLKSSFTSPVSRSLLTPRGISGS-PFRVVPSKRSPRFLVKAIQSEKPTYQVI 61
           + +SPMASQLKSSFT P    L+TPRG+ GS P   +PS+R   F VKAIQSEKP YQVI
Sbjct: 2   AAASPMASQLKSSFTRP----LVTPRGLCGSSPLHQLPSRRQFNFTVKAIQSEKPNYQVI 57

Query: 62  QPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKA 121
           QPINGDPFIGSLETP+TSSPL+AWYLSNLP YRTAV+PLLRG+EVGLAHGF LVGPFVKA
Sbjct: 58  QPINGDPFIGSLETPVTSSPLVAWYLSNLPGYRTAVNPLLRGIEVGLAHGFFLVGPFVKA 117

Query: 122 GPLRNTEIAGPAGSLAAGGLVVILSICLTIYGIASFSEGEPSTAPGLTLTGRKKEPDQLQ 181
           GPLRNTE AG AGSLAA GL+VILSICLTIYG++SF+EG+PS AP LTLTGRKK+PD LQ
Sbjct: 118 GPLRNTEYAGSAGSLAAAGLIVILSICLTIYGVSSFNEGDPSIAPSLTLTGRKKQPDPLQ 177

Query: 182 TADGWAKFTGGFFFGGISGVIWAYFLLYVLNLPYFVK 218
           TADGW+KFTGGFFFGGISGV WAYFLLYVL+LPYFVK
Sbjct: 178 TADGWSKFTGGFFFGGISGVTWAYFLLYVLDLPYFVK 214

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242056253|ref|XP_002457272.1| hypothetical protein SORBIDRAFT_03g004560 [Sorghum bicolor] gi|241929247|gb|EES02392.1| hypothetical protein SORBIDRAFT_03g004560 [Sorghum bicolor]

 Score =  301 bits (771), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 157/218 (72%), Positives = 181/218 (83%), Gaps = 7/218 (3%)

Query: 1   MASVSSPMASQLKSSFTSPVSRSLLTPRGISGSPFRVVPSKRSPRFLVKAIQSEKPTYQV 60
           MA+  +PMASQ+  S     S+    PRG+SG+    + + R PRF VKAIQ EK TYQV
Sbjct: 1   MATAYAPMASQVMKSSLQLHSK----PRGLSGA---ALTTTRRPRFTVKAIQPEKATYQV 53

Query: 61  IQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVK 120
           +QPINGDPFIGSLETP+TSSPL+AWYLSNLPAYRTAVSPLLRG+EVGLAHG+LLVGPF  
Sbjct: 54  VQPINGDPFIGSLETPVTSSPLVAWYLSNLPAYRTAVSPLLRGIEVGLAHGYLLVGPFAL 113

Query: 121 AGPLRNTEIAGPAGSLAAGGLVVILSICLTIYGIASFSEGEPSTAPGLTLTGRKKEPDQL 180
            GPLRNT + G AG+L A GLV ILS+CLT+YG+ASF+EGEPSTAP LTLTGRK E D+L
Sbjct: 114 TGPLRNTPVHGQAGALGAAGLVAILSVCLTMYGVASFNEGEPSTAPTLTLTGRKNEADKL 173

Query: 181 QTADGWAKFTGGFFFGGISGVIWAYFLLYVLNLPYFVK 218
           QTADGW+KFTGG FFGGISGV+WAYFLLYVL+LPY+ K
Sbjct: 174 QTADGWSKFTGGVFFGGISGVLWAYFLLYVLDLPYYFK 211

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	218
TAIR|locus:2135808	219	PSAL "AT4G12800" [Arabidopsis	1.0	0.995	0.712	6e-80
UNIPROTKB|P37277	157	psaL "Photosystem I reaction c	0.651	0.904	0.387	1.4e-25

TAIR|locus:2135808 PSAL "AT4G12800" [Arabidopsis thaliana (taxid:3702)]

 Score = 803 (287.7 bits), Expect = 6.0e-80, P = 6.0e-80
 Identities = 156/219 (71%), Positives = 177/219 (80%)

Query:     1 MASVSSPMASQLKSSFTSP-VSRSLLTPRGISGSPFRVVPSKRSPRFLVKAIQSEKPTYQ 59
             MA+ +SPMASQL+SSF+S  +S+ L  P+GISG+PF V P+KR   F V+A++S+K T+Q
Sbjct:     1 MAASASPMASQLRSSFSSASLSQRLAVPKGISGAPFGVSPTKRVSSFTVRAVKSDKTTFQ 60

Query:    60 VIQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFV 119
             V+QPINGDPFIGSLETP+TSSPLIAWYLSNLP YRTAV+PLLRGVEVGLAHGF LVGPFV
Sbjct:    61 VVQPINGDPFIGSLETPVTSSPLIAWYLSNLPGYRTAVNPLLRGVEVGLAHGFFLVGPFV 120

Query:   120 KAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFSEGEPSTAPGLTLTGRKKEPDQ 179
             KAGPLRNT              VVILS+CLTIYGI+SF EGEPS AP LTLTGRKK+PDQ
Sbjct:   121 KAGPLRNTAYAGSAGSLAAAGLVVILSMCLTIYGISSFKEGEPSIAPSLTLTGRKKQPDQ 180

Query:   180 LQTADGWAKXXXXXXXXXISGVIWAYFLLYVLNLPYFVK 218
             LQTADGWAK         ISGV WAYFLLYVL+LPYFVK
Sbjct:   181 LQTADGWAKFTGGFFFGGISGVTWAYFLLYVLDLPYFVK 219

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009522 "photosystem I" evidence=IEA

GO:0009538 "photosystem I reaction center" evidence=IEA;ISS

GO:0015979 "photosynthesis" evidence=IEA;RCA

GO:0019684 "photosynthesis, light reaction" evidence=ISS;RCA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0010287 "plastoglobule" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0006364 "rRNA processing" evidence=RCA

GO:0009657 "plastid organization" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0030003 "cellular cation homeostasis" evidence=RCA

GO:0070838 "divalent metal ion transport" evidence=RCA

UNIPROTKB|P37277 psaL "Photosystem I reaction center subunit XI" [Synechocystis sp. PCC 6803 substr. Kazusa (taxid:1111708)]

 Score = 290 (107.1 bits), Expect = 1.4e-25, P = 1.4e-25
 Identities = 60/155 (38%), Positives = 88/155 (56%)

Query:    59 QVIQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPF 118
             QV+Q  NGDPF+G L TPI+ S     ++ NLPAYR  +SP+LRG+EVG+AHG+ L+GP+
Sbjct:     6 QVVQAYNGDPFVGHLSTPISDSAFTRTFIGNLPAYRKGLSPILRGLEVGMAHGYFLIGPW 65

Query:   119 VKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFSEGEPSTAPGLTLTGRKKEPD 178
                GPLR++E             +++ +  L+ YG+ +F +GE  +             D
Sbjct:    66 TLLGPLRDSEYQYIGGLIGALALILVATAALSSYGLVTF-QGEQGSG------------D 112

Query:   179 QLQTADGWAKXXXXXXXXXISGVIWAYFLLYVLNL 213
              LQTADGW++         + G   AYFLL  L++
Sbjct:   113 TLQTADGWSQFAAGFFVGGMGGAFVAYFLLENLSV 147


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.136   0.405    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      218       197   0.00082  111 3  11 22  0.48    32
                                                     31  0.44    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  590 (63 KB)
  Total size of DFA:  148 KB (2089 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  18.04u 0.09s 18.13t   Elapsed:  00:00:01
  Total cpu time:  18.05u 0.09s 18.14t   Elapsed:  00:00:01
  Start:  Sat May 11 11:59:35 2013   End:  Sat May 11 11:59:36 2013

GO:0030094 "plasma membrane-derived photosystem I" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q39654	PSAL_CUCSA	No assigned EC number	0.7889	0.9954	1.0	N/A	no
Q41385	PSAL_SPIOL	No assigned EC number	0.7808	0.9862	0.9953	N/A	no
Q9SUI4	PSAL_ARATH	No assigned EC number	0.7945	1.0	0.9954	yes	no
P23993	PSAL_HORVU	No assigned EC number	0.7169	0.9266	0.9665	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	218
PLN00038	165	PLN00038, PLN00038, photosystem I reaction center	1e-105
pfam02605	154	pfam02605, PsaL, Photosystem I reaction centre sub	4e-71
CHL00120	143	CHL00120, psaL, photosystem I subunit XI; Validate	4e-56
PRK00704	160	PRK00704, PRK00704, photosystem I reaction center	1e-52

>gnl|CDD|215037 PLN00038, PLN00038, photosystem I reaction center subunit XI (PsaL); Provisional

 Score =  300 bits (769), Expect = e-105
 Identities = 144/165 (87%), Positives = 153/165 (92%)

Query: 51  IQSEKPTYQVIQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAH 110
           +Q+ KP  QVIQPINGDPFIGSLETP+TSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAH
Sbjct: 1   VQAAKPKAQVIQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAH 60

Query: 111 GFLLVGPFVKAGPLRNTEIAGPAGSLAAGGLVVILSICLTIYGIASFSEGEPSTAPGLTL 170
           GFLLVGPFVK GPLRNT++AG AGSL+A GLV+IL++CLTIYG ASF EGEPS AP LTL
Sbjct: 61  GFLLVGPFVKLGPLRNTDVAGLAGSLSAAGLVLILTLCLTIYGAASFQEGEPSIAPSLTL 120

Query: 171 TGRKKEPDQLQTADGWAKFTGGFFFGGISGVIWAYFLLYVLNLPY 215
           TGRKKEPD LQTADGWAKFTGGFFFGGISGV WAYFLLYVLNLPY
Sbjct: 121 TGRKKEPDPLQTADGWAKFTGGFFFGGISGVAWAYFLLYVLNLPY 165

Length = 165

>gnl|CDD|145644 pfam02605, PsaL, Photosystem I reaction centre subunit XI

 Score =  213 bits (544), Expect = 4e-71
 Identities = 85/158 (53%), Positives = 112/158 (70%), Gaps = 4/158 (2%)

Query: 58  YQVIQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGP 117
             V++P NGDPF+G+L TP+ SSP    +++NLPAYR  +SPLLRG+E+G+AHG+ L+GP
Sbjct: 1   RDVVKPYNGDPFVGNLATPVNSSPFTKAFINNLPAYRQGLSPLLRGLEIGMAHGYFLIGP 60

Query: 118 FVKAGPLRNTEIAGPAGSLAAGGLVVILSICLTIYGIASFSEGEPSTAPGLTLTGRKKEP 177
           F K GPLRNT++A  AG L+A GLV+IL+ CL++YG  SF  GE  TA   T       P
Sbjct: 61  FAKLGPLRNTDVALLAGLLSAIGLVLILTACLSLYGSVSFGNGEAPTATPTT----PNPP 116

Query: 178 DQLQTADGWAKFTGGFFFGGISGVIWAYFLLYVLNLPY 215
           D LQT++GW++FT GFF GG+ G  +AYFLL  L L  
Sbjct: 117 DALQTSEGWSQFTSGFFVGGVGGAFFAYFLLSNLPLID 154

This family consists of the photosystem I reaction centre subunit XI, PsaL, from plants and bacteria. PsaL is one of the smaller subunits in photosystem I with only two transmembrane alpha helices and interacts closely with PsaI. Length = 154

>gnl|CDD|177043 CHL00120, psaL, photosystem I subunit XI; Validated

 Score =  174 bits (444), Expect = 4e-56
 Identities = 76/151 (50%), Positives = 98/151 (64%), Gaps = 13/151 (8%)

Query: 58  YQVIQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGP 117
              I+P N DPF+G L TPIT+S      L NLPAYR  +SPLLRG+E+G+AHG+ L+GP
Sbjct: 2   ANFIKPYNDDPFVGHLSTPITTSSFTRALLGNLPAYRRGLSPLLRGLEIGMAHGYFLIGP 61

Query: 118 FVKAGPLRNTEIAGPAGSLAAGGLVVILSICLTIYGIASFSEGEPSTAPGLTLTGRKKEP 177
           F K GPLRN+++A  AG L+A GL++IL++CLTIYG+ SF E + S              
Sbjct: 62  FYKLGPLRNSDVALLAGFLSAIGLIIILTLCLTIYGVVSFQEEDSSG------------- 108

Query: 178 DQLQTADGWAKFTGGFFFGGISGVIWAYFLL 208
           D LQT  GW +FT GF  G + G  +AY LL
Sbjct: 109 DDLQTKKGWRQFTSGFLVGAVGGAGFAYLLL 139

Length = 143

>gnl|CDD|234817 PRK00704, PRK00704, photosystem I reaction center protein subunit XI; Provisional

 Score =  166 bits (422), Expect = 1e-52
 Identities = 67/149 (44%), Positives = 89/149 (59%), Gaps = 5/149 (3%)

Query: 60  VIQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFV 119
            + P  GDP +G+L TP+ SS     +++NLP YR  +SP  RG+E G+AHG+LL GPF 
Sbjct: 1   WVVPPVGDPCVGNLATPVNSSYFTKAFINNLPIYRPGLSPNFRGLETGMAHGYLLYGPFA 60

Query: 120 KAGPLRNTEIAGPAGSLAAGGLVVILSICLTIYGIASFSEGEPSTAPGLTLTGRKKEPDQ 179
           K GPLR+TE A  AG LAA GLV+IL+  L++YG              +        P  
Sbjct: 61  KLGPLRDTEFANLAGLLAAIGLVLILTALLSLYGAVGKQPNVAPPDVTV-----PNPPAD 115

Query: 180 LQTADGWAKFTGGFFFGGISGVIWAYFLL 208
           L T +GW+ FT GF+ GG  G ++AYFLL
Sbjct: 116 LFTREGWSDFTSGFWLGGCGGAVFAYFLL 144

Length = 160

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	218
PLN00038	165	photosystem I reaction center subunit XI (PsaL); P	100.0
PRK00704	160	photosystem I reaction center protein subunit XI;	100.0
CHL00120	143	psaL photosystem I subunit XI; Validated	100.0
PF02605	153	PsaL: Photosystem I reaction centre subunit XI; In	100.0

>PLN00038 photosystem I reaction center subunit XI (PsaL); Provisional

Probab=100.00  E-value=2.1e-88  Score=565.45  Aligned_cols=165  Identities=87%  Similarity=1.440  Sum_probs=162.9

Q ss_pred             hhcCCCcccccccCCCCCCccccccccCChHHHHHHHhcccccccCCCccchhhhhhhcccceeecceeeeccCCCCCcc
Q 027843           51 IQSEKPTYQVIQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIA  130 (218)
Q Consensus        51 ~~~~~~~~~~IkP~~~DPfvGnLaTPVnSS~~tk~fL~NLPaYR~GLSP~~RGLEIGMAHGYfLvGPF~klGPLRnte~A  130 (218)
                      ||+|++++|+|||||+|||||||+||||||+++||||+|||+||+||||++|||||||||||||+|||+|+|||||||+|
T Consensus         1 ~~~~~~~~~~i~p~~~DP~vG~L~TPvnsS~~t~~fi~NLPaYR~GlSp~~RGLEiGmAHGYfL~GPF~klGPLRnte~a   80 (165)
T PLN00038          1 VQAAKPKAQVIQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKLGPLRNTDVA   80 (165)
T ss_pred             CCCCCccceeeecCCCCCccccccCccCCcHHHHHHHhcCccccccCCHhhhhhhhhhhceeeeechHHhhCCCcCchHH
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCccccCCCCCCCCCCChhhhhccccceecccchHHHHHHHHHhh
Q 027843          131 GPAGSLAAGGLVVILSICLTIYGIASFSEGEPSTAPGLTLTGRKKEPDQLQTADGWAKFTGGFFFGGISGVIWAYFLLYV  210 (218)
Q Consensus       131 ~laGlLsaigLV~IlTi~LsiYG~~sfq~~~p~~~~~~tlt~~~~~~~~L~T~eGWs~Ft~GF~iGG~GGA~fAy~Ll~~  210 (218)
                      ++||+|+|||||+|||+||+|||.++||+++|+++++.|+|+|++.+|+|||+|||+||++||||||||||+||||||++
T Consensus        81 ~laGlLsaiglv~IlT~~Ls~Yg~~~f~~~~p~~~~~~t~~~~~~~~d~L~T~~GWs~Ft~GF~vGg~GGa~fAy~Ll~~  160 (165)
T PLN00038         81 GLAGSLSAAGLVLILTLCLTIYGAASFQEGEPSIAPSLTLTGRKKEPDPLQTADGWAKFTGGFFFGGISGVAWAYFLLYV  160 (165)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcccccCCCCccccccccccccCCCcccccCcccHHHhccceeeecccHHHHHHHHHhc
Confidence            99999999999999999999999999999888999999999999999999999999999999999999999999999999


Q ss_pred             CCCCc
Q 027843          211 LNLPY  215 (218)
Q Consensus       211 ~~lp~  215 (218)
                      +||||
T Consensus       161 l~~p~  165 (165)
T PLN00038        161 LNLPY  165 (165)
T ss_pred             ccCCC
Confidence            99998

>PRK00704 photosystem I reaction center protein subunit XI; Provisional

Probab=100.00  E-value=3e-81  Score=520.97  Aligned_cols=148  Identities=47%  Similarity=0.850  Sum_probs=139.5

Q ss_pred             ccccCCCCCCccccccccCChHHHHHHHhcccccccCCCccchhhhhhhcccceeecceeeeccCCCCCcchhhhHHHHH
Q 027843           60 VIQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIAGPAGSLAAG  139 (218)
Q Consensus        60 ~IkP~~~DPfvGnLaTPVnSS~~tk~fL~NLPaYR~GLSP~~RGLEIGMAHGYfLvGPF~klGPLRnte~A~laGlLsai  139 (218)
                      +||||++|||||||+||||||++|||||+||||||+||||++|||||||||||||+|||+|+|||||||+|++||+|+||
T Consensus         1 ~i~p~~~DP~vG~L~TPvnsS~~t~~fi~NLPaYR~GLSp~~RGLEiGmAHGYfL~GPF~~lGPLRnte~a~laGllsai   80 (160)
T PRK00704          1 WVVPPVGDPCVGNLATPVNSSYFTKAFINNLPIYRPGLSPNFRGLETGMAHGYLLYGPFAKLGPLRDTEFANLAGLLAAI   80 (160)
T ss_pred             CccCCCCCCccccccCCcCCcHHHHHHHhcCccccccCCHHhhhhHhhhhceeeeechHHHhCCCcCchHHHHHHHHHHH
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhccccCCCCCCCCCCccccCCCCCCCCCCChhhhhccccceecccchHHHHHHHHHhhCC
Q 027843          140 GLVVILSICLTIYGIASFSEGEPSTAPGLTLTGRKKEPDQLQTADGWAKFTGGFFFGGISGVIWAYFLLYVLN  212 (218)
Q Consensus       140 gLV~IlTi~LsiYG~~sfq~~~p~~~~~~tlt~~~~~~~~L~T~eGWs~Ft~GF~iGG~GGA~fAy~Ll~~~~  212 (218)
                      |||+|||+||++||.++||++++...    .| ++++||+|||+|||+||++||||||||||+|||+||+|++
T Consensus        81 glv~IlT~~LslYg~~~~~~~~~~~~----~t-~~~~p~~l~T~~gWs~Ft~GF~vGg~GGa~fAy~Ll~~~~  148 (160)
T PRK00704         81 GLVLILTALLSLYGAVGKQPNVAPPD----VT-VPNPPADLFTREGWSDFTSGFWLGGCGGAVFAYFLLETLD  148 (160)
T ss_pred             HHHHHHHHHHHHhccccCCCCCCCcc----cc-ccCChhhccCcccHHHhhcceeeccccHHHHHHHHHhhhH
Confidence            99999999999999999999654221    22 4789999999999999999999999999999999999854

>CHL00120 psaL photosystem I subunit XI; Validated

Probab=100.00  E-value=4.8e-81  Score=512.23  Aligned_cols=141  Identities=53%  Similarity=0.991  Sum_probs=135.7

Q ss_pred             ccccccCCCCCCccccccccCChHHHHHHHhcccccccCCCccchhhhhhhcccceeecceeeeccCCCCCcchhhhHHH
Q 027843           58 YQVIQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIAGPAGSLA  137 (218)
Q Consensus        58 ~~~IkP~~~DPfvGnLaTPVnSS~~tk~fL~NLPaYR~GLSP~~RGLEIGMAHGYfLvGPF~klGPLRnte~A~laGlLs  137 (218)
                      .|+|||||+|||||||+||||||++|||||+|||+||+||||++|||||||||||||+|||+|+|||||||+|++||+|+
T Consensus         2 ~~~i~p~~~DP~vG~L~TPvnsS~~t~~fi~NLPaYR~GlSp~~RGLEiGmAHGYfL~GPf~~lGPLRnt~~a~laGlls   81 (143)
T CHL00120          2 ANFIKPYNDDPFVGHLSTPITTSSFTRALLGNLPAYRRGLSPLLRGLEIGMAHGYFLIGPFYKLGPLRNSDVALLAGFLS   81 (143)
T ss_pred             CcccccCCCCCccccccCCcCCcHHHHHHHhcCccccccCCHHhhhhHhhhhceeeeechHHhhCCCcCchHHHHHHHHH
Confidence            37999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhccccCCCCCCCCCCccccCCCCCCCCCCChhhhhccccceecccchHHHHHHHHHhhC
Q 027843          138 AGGLVVILSICLTIYGIASFSEGEPSTAPGLTLTGRKKEPDQLQTADGWAKFTGGFFFGGISGVIWAYFLLYVL  211 (218)
Q Consensus       138 aigLV~IlTi~LsiYG~~sfq~~~p~~~~~~tlt~~~~~~~~L~T~eGWs~Ft~GF~iGG~GGA~fAy~Ll~~~  211 (218)
                      |||||+|||+||++||.++||+++             +.||+|||+|||+||++||||||||||+|||+||+|+
T Consensus        82 aiglv~Ilt~~L~~Yg~~~~~~~~-------------~~~~~l~t~~gW~~Ft~GF~~Gg~GGa~fAy~Ll~ni  142 (143)
T CHL00120         82 AIGLIIILTLCLTIYGVVSFQEED-------------SSGDDLQTKKGWRQFTSGFLVGAVGGAGFAYLLLSNI  142 (143)
T ss_pred             HHHHHHHHHHHHHHhcccccCCCC-------------CCcccccCcccHHHhccceeeecccHHHHHHHHHHcC
Confidence            999999999999999999999842             2468999999999999999999999999999999973

>PF02605 PsaL: Photosystem I reaction centre subunit XI; InterPro: IPR003757 The trimeric photosystem I of the cyanobacterium Synechococcus elongatus recomprises 11 protein subunits

Probab=100.00  E-value=3.9e-82  Score=523.47  Aligned_cols=151  Identities=61%  Similarity=1.071  Sum_probs=137.3

Q ss_pred             ccccccCCCCCCccccccccCChHHHHHHHhcccccccCCCccchhhhhhhcccceeecceeeeccCCCCCcchhhhHHH
Q 027843           58 YQVIQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIAGPAGSLA  137 (218)
Q Consensus        58 ~~~IkP~~~DPfvGnLaTPVnSS~~tk~fL~NLPaYR~GLSP~~RGLEIGMAHGYfLvGPF~klGPLRnte~A~laGlLs  137 (218)
                      +|+||||| |||||||+||||||++|||||+||||||+||||++|||||||||||||+|||+|||||||||+|++||+|+
T Consensus         1 ~~~v~p~~-DP~vG~L~TPinsS~~t~~fl~NLPaYR~GLSp~~RGLEiGmAHGYfL~GPF~~lGPLRnt~~a~laGlls   79 (153)
T PF02605_consen    1 QQVVKPYN-DPFVGNLATPINSSPFTKAFLNNLPAYRKGLSPLLRGLEIGMAHGYFLVGPFVKLGPLRNTEVANLAGLLS   79 (153)
T ss_dssp             -SSSCCCC-STTCBSEESCCCC-CCCCCCCCTSTTTSTTS-HHHHHHHHHHHCCCCCTHHHHHCSTTTTSTTCCHCCCCC
T ss_pred             CCccccCC-CCccccccCcccccHHHHHHHhcCccccccCChhhhhhhhhhhceeeEechhhhcccCcCcchHHHHHHHH
Confidence            37999999 99999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhccccCCCCCCCCCCccccCCCCCCCCCCChhhhhccccceecccchHHHHHHHHHhhCCC
Q 027843          138 AGGLVVILSICLTIYGIASFSEGEPSTAPGLTLTGRKKEPDQLQTADGWAKFTGGFFFGGISGVIWAYFLLYVLNL  213 (218)
Q Consensus       138 aigLV~IlTi~LsiYG~~sfq~~~p~~~~~~tlt~~~~~~~~L~T~eGWs~Ft~GF~iGG~GGA~fAy~Ll~~~~l  213 (218)
                      |+|||+|+|+||+|||+++||+++.   +..++|.+ ++||+|||+|||+||++||||||||||+|||+||+|+++
T Consensus        80 aiglv~IlT~~LsiYg~~~f~~~~~---~~~~~t~~-~~p~~l~T~~gWs~F~~GF~iGg~GGa~fAy~Ll~n~~~  151 (153)
T PF02605_consen   80 AIGLVLILTICLSIYGSVSFQEPPK---PTATLTVP-NPPDDLQTSEGWSQFTSGFFIGGCGGAFFAYFLLENLPL  151 (153)
T ss_dssp             CCCHHHHHCCCCCCCCCCCTSS------SSSS-SST-T-SSGGGSHHHHHHHHHHHHHHHCCCCHHHHHCHHTHHC
T ss_pred             HHHHHHHHHHHHHHhcccccCCCCC---CcccccCC-CChhhccChhhHHHhcccceeccccHHHHHHHHHhcccc
Confidence            9999999999999999999999542   34477774 778999999999999999999999999999999998753

Subunit XI, PsaL, from plants and bacteria is one of the smaller subunits with only two transmembrane alpha helices. PsaL interacts closely with PsaI [].; GO: 0015979 photosynthesis, 0009522 photosystem I, 0009538 photosystem I reaction center; PDB: 2WSC_L 2WSF_L 2WSE_L 2O01_L 1JB0_L 3PCQ_L.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	218
2wsc_L	216	Improved Model Of Plant Photosystem I Length = 216		1e-82
3lw5_L	161	Improved Model Of Plant Photosystem I Length = 161		2e-71
2o01_L	164	The Structure Of A Plant Photosystem I Supercomplex		4e-68
1jb0_L	154	Crystal Structure Of Photosystem I: A Photosyntheti		3e-28

>pdb|2WSC|L Chain L, Improved Model Of Plant Photosystem I Length = 216

Iteration: 1
 Score =  301 bits (772), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 152/219 (69%), Positives = 174/219 (79%), Gaps = 4/219 (1%)
Query: 1   MASVSSPMASQLKSSFTSPVSRSLLTPRGISGSPFRVVPS-KRSPRFLVKAIQSEKPTYQ 59
           MA+ +SPMASQLKS FT+   ++L+ P+GISG   R  PS +R   F V+AI++EKPTYQ
Sbjct: 1   MAATTSPMASQLKSGFTT---KALVVPKGISGPALRGFPSPRRHTSFTVRAIKTEKPTYQ 57
Query: 60  VIQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFV 119
           VIQP+NGDPFIG LETP+TSSPLIAWYLSNLPAYRTAV+PLLRGVEVGLAHGFLLVGPFV
Sbjct: 58  VIQPLNGDPFIGGLETPVTSSPLIAWYLSNLPAYRTAVNPLLRGVEVGLAHGFLLVGPFV 117
Query: 120 KAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFSEGEPSTAPGLTLTGRKKEPDQ 179
           KAGPLRNTE             VVILS+CLT+YGIASF EGEPS AP LTLTGRKK+PDQ
Sbjct: 118 KAGPLRNTEYAGAAGSLAAAGLVVILSMCLTMYGIASFKEGEPSIAPALTLTGRKKQPDQ 177
Query: 180 LQTADGWAKXXXXXXXXXISGVIWAYFLLYVLNLPYFVK 218
           LQ+ADGWAK         +SGV WA FL+YVL+LPY+ K
Sbjct: 178 LQSADGWAKFTGGFFFGGVSGVTWACFLMYVLDLPYYFK 216

>pdb|3LW5|L Chain L, Improved Model Of Plant Photosystem I Length = 161

Iteration: 1
 Score =  264 bits (675), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 131/161 (81%), Positives = 138/161 (85%)
Query: 55  KPTYQVIQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLL 114
           KPTYQVIQPINGDPFIGSLETP+TSSPLIAWYLSNLPAYRTAVSPLLRG+EVGLAHG+LL
Sbjct: 1   KPTYQVIQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGYLL 60
Query: 115 VGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFSEGEPSTAPGLTLTGRK 174
           VGPFVKAGPLRNTEI            VVILS+CLTIYGI+SF+EG PSTAP LTLTGRK
Sbjct: 61  VGPFVKAGPLRNTEIAGQAGSLAAGGLVVILSLCLTIYGISSFNEGAPSTAPSLTLTGRK 120
Query: 175 KEPDQLQTADGWAKXXXXXXXXXISGVIWAYFLLYVLNLPY 215
           KEPDQLQTADGWAK         ISGVIWAYFLLYVL+LPY
Sbjct: 121 KEPDQLQTADGWAKFTGGFFFGGISGVIWAYFLLYVLDLPY 161

>pdb|2O01|L Chain L, The Structure Of A Plant Photosystem I Supercomplex At 3.4 Angstrom Resolution Length = 164

Iteration: 1
 Score =  254 bits (648), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 124/164 (75%), Positives = 135/164 (82%)
Query: 55  KPTYQVIQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLL 114
           KPTYQVIQP+NGDPFIG LETP+TSSPLIAWYLSNLPAYRTAV+PLLRGVEVGLAHGFLL
Sbjct: 1   KPTYQVIQPLNGDPFIGGLETPVTSSPLIAWYLSNLPAYRTAVNPLLRGVEVGLAHGFLL 60
Query: 115 VGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFSEGEPSTAPGLTLTGRK 174
           VGPFVKAGPLRNTE             VVILS+CLT+YGIASF EGEPS AP LTLTGRK
Sbjct: 61  VGPFVKAGPLRNTEYAGAAGSLAAAGLVVILSMCLTMYGIASFKEGEPSIAPALTLTGRK 120
Query: 175 KEPDQLQTADGWAKXXXXXXXXXISGVIWAYFLLYVLNLPYFVK 218
           K+PDQLQ+ADGWAK         +SGV WA FL+YVL+LPY+ K
Sbjct: 121 KQPDQLQSADGWAKFTGGFFFGGVSGVTWACFLMYVLDLPYYFK 164

>pdb|1JB0|L Chain L, Crystal Structure Of Photosystem I: A Photosynthetic Reaction Center And Core Antenna System From Cyanobacteria Length = 154

Iteration: 1
 Score =  121 bits (303), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 56/150 (37%), Positives = 90/150 (60%), Gaps = 13/150 (8%)
Query: 59  QVIQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPF 118
           ++++P NGDPF+G L TPI+ S L+  ++ NLPAYR  +SP+LRG+EVG+AHG+ L+GP+
Sbjct: 3   ELVKPYNGDPFVGHLSTPISDSGLVKTFIGNLPAYRQGLSPILRGLEVGMAHGYFLIGPW 62
Query: 119 VKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFSEGEPSTAPGLTLTGRKKEPD 178
           VK GPLR++++            +++ + CL  YG+ SF +G  S+ P            
Sbjct: 63  VKLGPLRDSDVANLGGLISGIALILVATACLAAYGLVSFQKGGSSSDP------------ 110
Query: 179 QLQTADGWAKXXXXXXXXXISGVIWAYFLL 208
            L+T++GW++         +     A+FLL
Sbjct: 111 -LKTSEGWSQFTAGFFVGAMGSAFVAFFLL 139

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	218
2wsc_L	216	Photosystem I reaction center subunit XI, chloropl	9e-82
1jb0_L	154	Photosystem 1 reaction centre subunit XI; membrane	9e-59

>2wsc_L Photosystem I reaction center subunit XI, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Spinacia oleracea} PDB: 2wse_L* 2wsf_L* 2o01_L* 3lw5_L* Length = 216

 Score =  242 bits (617), Expect = 9e-82
 Identities = 171/219 (78%), Positives = 190/219 (86%), Gaps = 4/219 (1%)

Query: 1   MASVSSPMASQLKSSFTSPVSRSLLTPRGISGSPFRVVPSKRSPR-FLVKAIQSEKPTYQ 59
           MA+ +SPMASQLKS FT+     L+ P+GISG   R  PS R    F V+AI++EKPTYQ
Sbjct: 1   MAATTSPMASQLKSGFTTKA---LVVPKGISGPALRGFPSPRRHTSFTVRAIKTEKPTYQ 57

Query: 60  VIQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFV 119
           VIQP+NGDPFIG LETP+TSSPLIAWYLSNLPAYRTAV+PLLRGVEVGLAHGFLLVGPFV
Sbjct: 58  VIQPLNGDPFIGGLETPVTSSPLIAWYLSNLPAYRTAVNPLLRGVEVGLAHGFLLVGPFV 117

Query: 120 KAGPLRNTEIAGPAGSLAAGGLVVILSICLTIYGIASFSEGEPSTAPGLTLTGRKKEPDQ 179
           KAGPLRNTE AG AGSLAA GLVVILS+CLT+YGIASF EGEPS AP LTLTGRKK+PDQ
Sbjct: 118 KAGPLRNTEYAGAAGSLAAAGLVVILSMCLTMYGIASFKEGEPSIAPALTLTGRKKQPDQ 177

Query: 180 LQTADGWAKFTGGFFFGGISGVIWAYFLLYVLNLPYFVK 218
           LQ+ADGWAKFTGGFFFGG+SGV WA FL+YVL+LPY+ K
Sbjct: 178 LQSADGWAKFTGGFFFGGVSGVTWACFLMYVLDLPYYFK 216

>1jb0_L Photosystem 1 reaction centre subunit XI; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.31.1.1 PDB: 3pcq_L* Length = 154

 Score =  181 bits (460), Expect = 9e-59
 Identities = 65/150 (43%), Positives = 100/150 (66%), Gaps = 13/150 (8%)

Query: 59  QVIQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPF 118
           ++++P NGDPF+G L TPI+ S L+  ++ NLPAYR  +SP+LRG+EVG+AHG+ L+GP+
Sbjct: 3   ELVKPYNGDPFVGHLSTPISDSGLVKTFIGNLPAYRQGLSPILRGLEVGMAHGYFLIGPW 62

Query: 119 VKAGPLRNTEIAGPAGSLAAGGLVVILSICLTIYGIASFSEGEPSTAPGLTLTGRKKEPD 178
           VK GPLR++++A   G ++   L+++ + CL  YG+ SF +G  S              D
Sbjct: 63  VKLGPLRDSDVANLGGLISGIALILVATACLAAYGLVSFQKGGSS-------------SD 109

Query: 179 QLQTADGWAKFTGGFFFGGISGVIWAYFLL 208
            L+T++GW++FT GFF G +     A+FLL
Sbjct: 110 PLKTSEGWSQFTAGFFVGAMGSAFVAFFLL 139

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	218
d1jb0l_	151	f.31.1.1 (L:) Photosystem I reaction center subuni	7e-66

>d1jb0l_ f.31.1.1 (L:) Photosystem I reaction center subunit XI, PsaL {Synechococcus elongatus [TaxId: 32046]} Length = 151

class: Membrane and cell surface proteins and peptides
fold: Photosystem I reaction center subunit XI, PsaL
superfamily: Photosystem I reaction center subunit XI, PsaL
family: Photosystem I reaction center subunit XI, PsaL
domain: Photosystem I reaction center subunit XI, PsaL
species: Synechococcus elongatus [TaxId: 32046]

 Score =  198 bits (504), Expect = 7e-66
 Identities = 65/149 (43%), Positives = 99/149 (66%), Gaps = 13/149 (8%)

Query: 60  VIQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFV 119
           +++P NGDPF+G L TPI+ S L+  ++ NLPAYR  +SP+LRG+EVG+AHG+ L+GP+V
Sbjct: 1   LVKPYNGDPFVGHLSTPISDSGLVKTFIGNLPAYRQGLSPILRGLEVGMAHGYFLIGPWV 60

Query: 120 KAGPLRNTEIAGPAGSLAAGGLVVILSICLTIYGIASFSEGEPSTAPGLTLTGRKKEPDQ 179
           K GPLR++++A   G ++   L+++ + CL  YG+ SF +G  S              D 
Sbjct: 61  KLGPLRDSDVANLGGLISGIALILVATACLAAYGLVSFQKGGSS-------------SDP 107

Query: 180 LQTADGWAKFTGGFFFGGISGVIWAYFLL 208
           L+T++GW++FT GFF G +     A+FLL
Sbjct: 108 LKTSEGWSQFTAGFFVGAMGSAFVAFFLL 136

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	218
d1jb0l_	151	Photosystem I reaction center subunit XI, PsaL {Sy	100.0

>d1jb0l_ f.31.1.1 (L:) Photosystem I reaction center subunit XI, PsaL {Synechococcus elongatus [TaxId: 32046]}

class: Membrane and cell surface proteins and peptides
fold: Photosystem I reaction center subunit XI, PsaL
superfamily: Photosystem I reaction center subunit XI, PsaL
family: Photosystem I reaction center subunit XI, PsaL
domain: Photosystem I reaction center subunit XI, PsaL
species: Synechococcus elongatus [TaxId: 32046]

Probab=100.00  E-value=0  Score=474.95  Aligned_cols=140  Identities=46%  Similarity=0.979  Sum_probs=134.6

Q ss_pred             CCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCEEECCEEEECCCCCCCCCHHHHHHHHH
Q ss_conf             00248899986313565677299999973264434677942012332100010433111100147897741025678899
Q 027843           60 VIQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIAGPAGSLAAG  139 (218)
Q Consensus        60 ~IkP~~~DPfvGnLaTPVnSS~~tk~fL~NLPaYR~GLSP~~RGLEIGMAHGYfLvGPF~klGPLRnte~A~laGlLsai  139 (218)
                      +|||||+|||||||+||||||+++||||+||||||+||||++|||||||||||||+|||+|+|||||||+|+++|+|+|+
T Consensus         1 ~i~p~~~DP~vG~L~TPVnsS~~~k~fi~NLP~YR~GlSp~~RGLEiGmAHGYfL~GPF~~lGPLRnt~~a~~aGllsai   80 (151)
T d1jb0l_           1 LVKPYNGDPFVGHLSTPISDSGLVKTFIGNLPAYRQGLSPILRGLEVGMAHGYFLIGPWVKLGPLRDSDVANLGGLISGI   80 (151)
T ss_dssp             CCEEGGGCTTBBCEECHHHHCHHHHHHHHTSTTTCTTCCHHHHHHHHHHHHHHHHTHHHHHHSTTTTSTTHHHHHHHHHH
T ss_pred             CCCCCCCCCCEEECCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCEEEEECHHHHHCCCCCCHHHHHHHHHHHH
T ss_conf             96367899934420676466199999985081002559855535577232001265626650577683588888999999


Q ss_pred             HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCEECCCCHHHHHHHHHHHHCC
Q ss_conf             9999999999875125458899999998643589999997877234620124220134017999999985179
Q 027843          140 GLVVILSICLTIYGIASFSEGEPSTAPGLTLTGRKKEPDQLQTADGWAKFTGGFFFGGISGVIWAYFLLYVLN  212 (218)
Q Consensus       140 gLV~IlTi~LsiYG~~sfq~~~p~~~~~~tlt~~~~~~~~L~T~eGWs~Ft~GF~iGG~GGA~fAy~Ll~~~~  212 (218)
                      |||+|+|+||++||.++||++.+             .+|+|||+|||+||++|||+||||||+|||+||+|+.
T Consensus        81 glv~Ilt~~L~lYg~~sf~~~~~-------------~~d~l~t~~gWs~F~~GF~~Gg~GGa~fAy~Ll~n~~  140 (151)
T d1jb0l_          81 ALILVATACLAAYGLVSFQKGGS-------------SSDPLKTSEGWSQFTAGFFVGAMGSAFVAFFLLENFL  140 (151)
T ss_dssp             HHHHHHHHHHHHHHHHHTSSCCC-------------SSCGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred             HHHHHHHHHHHHHCCCCCCCCCC-------------CCCCCCCCCCHHHHHCHHHHCCCCHHHHHHHHHCCHH
T ss_conf             99999999999962666788999-------------8310337114888612102102538999999990249