Citrus Sinensis ID: 027886

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------
Protein Sequence
MQAAENMALGKTQRGGPAAVMQSAAEANERAGFTSHSTATHIARDQGVTVSESTVADGNRIITEAIGDQVLAQYATPEVPTRASGAALGRDQSTIGEALEATALSAGDKAVDQRDAAAIYAAEARASATNEIKPGGIGSRAQSAATQNERTTFFSDKITISDVSGDATTKLSDDKPVTREDAEGIISPEIRNKPDMRTTPGGVASSMAAAARLNQSK
Secondary Structure (PSIPRED)
cHHHHHHHccccccccHHHHHHHHHHHHHHccccccccccccccccccEEEEccccccccEEEEEEccEEcEEEcccccccccccccccccccHHHHHHHHHHHHHccccccHHcHHHHHHHHHHHccccccccccHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHccccccccccccccccccHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHcccccccHHHHHHHHHHHHHHccccccccccHHHHHcccEEEEEccccccEEEEEEEcccEEEEEEcccccccccccccccccEEHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHcccccccccccHHHHHHcHHHcccccccccHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
MQAAENmalgktqrggpaAVMQSAAEAneragftshstATHIardqgvtvsestvadgnrIITEAIGDQvlaqyatpevptrasgaalgrdqsTIGEALEATalsagdkavDQRDAAAIYAAEARAsatneikpggigsraqsaatqnerttffsdkitisdvsgdattklsddkpvtredaegiispeirnkpdmrttpggvASSMAAAARLNQSK
Flexible Loop (DISEMBL)
mqaaenmalgktqrggpAAVMQSAAEANERAGFTSHSTAthiardqgvtvsestvadGNRIITEAIGDQVLAQYATPEVPTRASGAALGRDQSTIGEALEATalsagdkavDQRDAAAIYAAEARasatneikpggigsraqSAATQNErttffsdkitisdvsgdattklsddkpvtredaegiispeirnkpdmrttpGGVASSMAAAARLNQSK
Low Complexity Region (SEG)
MQAAENMALGKTQRGGPAAVMQSAAEANERAGFTSHSTATHIARDQGVTVSESTVADGNRIITEAIGDQVLAQYATPEVPTRASGAALGRDQSTIGEALEATALSAGDKAVDQRDaaaiyaaearasaTNEIKPGGIGSRAQSAATQNERTTFFSDKITISDVSGDATTKLSDDKPVTREDAEGIISPEIRNKPDMRTTPGGVASSMAAAARLNQSK
Disordered region (IsUnstruct)
*****************************************************TVADGNRIITEAIGDQVLAQYAT*********************************************************************************************************************************************
Disordered Region (DISOPRED)
****ENM****TQ*****AVMQSAAEANERAGFTSHSTATHIARDQGVTVSESTVADGNRIITEAIGDQVLAQYAT****************STIGEALEAT*********DQRDAAAIYA*************GGIGSRAQSAATQNERTTFFSDKITISDVSGDATTKLSDDKPVTREDAEGIISPEIRNKP**RTTPGGVASSMAA*ARL****
Disordered Region (DISEMBL)
*************************************TATHIARDQGVTVSESTVADGNRIITEAIGDQVLAQYATPEVPTRASGAALGRDQSTIGEALEATALSAGDKAVDQRDAAAIYAAEARASATNEIKPG*************ERTTFFSDKITISDVSGDATTKLSDDKPVTREDAEGIISPEIRNKPDMRTTPGGVASSMAAAARLNQSK
Disordered Region (DISPRO)
**************************************ATHIARDQGVTVSESTVADGNRIITEAIGDQVLAQYATPE***********RDQSTIGEALEATALSAGDKAVDQRDAAAIYAAEARASATNEIKPGGIGSRAQS************DKITISDVSGDATTKLSDDKPVTREDAEGIISPEIR******TTP*GVASSMAA********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MQAAENMALGKTQRGGPAAVMQSAAEANERAGFTSHSTATHIARDQGVTVSESTVADGNRIITEAIGDQVLAQYATPEVPTRASGAALGRDQSTIGEALEATALSAGDKAVDQRDAAAIYAAEARASATNEIKPGGIGSRAQSAATQNERTTFFSDKITISDVSGDATTKLSDDKPVTREDAEGIISPEIRNKPDMRTTPGGVASSMAAAARLNQSK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	217	2.2.26 [Sep-21-2011]
P09444	264	Late embryogenesis abunda	N/A	no	0.981	0.806	0.559	4e-46

>sp|P09444|LEA34_GOSHI Late embryogenesis abundant protein D-34 OS=Gossypium hirsutum PE=4 SV=1

 Score =  184 bits (467), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 122/218 (55%), Positives = 153/218 (70%), Gaps = 5/218 (2%)

Query: 1   MQAAENMALGKTQRGGPAAVMQSAAEANERAGFTSHSTATHIARDQGVTVSESTVADGNR 60
           MQ AE   LG+TQ+GG AAVMQ+AA  NE+ G   H+  T IA +QGVT++E+ VA G R
Sbjct: 47  MQTAETQVLGQTQKGGTAAVMQAAATRNEQVGVVGHNDITDIAGEQGVTLAETDVA-GRR 105

Query: 61  IITEAIGDQVLAQY--ATPEVPTRASGAALGRDQSTIGEALEATALSAGDKAVDQRDAAA 118
           IITEA+  QV+ QY  ATP V T   G  L ++  TIGEALEATA +AGDK VDQ DAAA
Sbjct: 106 IITEAVAGQVVGQYVQATP-VMTSQVGVVL-QNAITIGEALEATAKTAGDKPVDQSDAAA 163

Query: 119 IYAAEARASATNEIKPGGIGSRAQSAATQNERTTFFSDKITISDVSGDATTKLSDDKPVT 178
           + AAE RA+ +N I PGG+ + AQSAA  N       +KI ++ V   AT KL  DK VT
Sbjct: 164 VQAAEVRATGSNVIIPGGLAATAQSAAAHNATLDRDEEKIKLNQVLTGATAKLPADKAVT 223

Query: 179 REDAEGIISPEIRNKPDMRTTPGGVASSMAAAARLNQS 216
           R+DAEG++S E+RN P++ T PGGVA+SMAAAARLN++
Sbjct: 224 RQDAEGVVSAELRNNPNVATHPGGVAASMAAAARLNEN 261

LEA proteins are late embryonic proteins abundant in higher plant seed embryos. There are two subsets of LEA proteins (5a and 5b), the first ones are expressed when the cotyledon weight reach 80 mg and the second set are expressed above 100 mg. The function of those proteins is not known.
Gossypium hirsutum (taxid: 3635)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	217
147815423	259	hypothetical protein VITISV_029641 [Viti	0.990	0.830	0.603	2e-58
359479623	271	PREDICTED: late embryogenesis abundant p	0.990	0.793	0.603	2e-58
449458528	259	PREDICTED: late embryogenesis abundant p	0.995	0.833	0.585	4e-58
312599835	265	late embryogenesis abundant protein grou	0.995	0.815	0.591	1e-57
449524738	259	PREDICTED: late embryogenesis abundant p	0.995	0.833	0.585	1e-57
356536775	279	PREDICTED: late embryogenesis abundant p	0.990	0.770	0.599	2e-57
57506542	256	ECP31 protein [Daucus carota]	0.976	0.828	0.597	6e-56
357440699	292	Late embryogenesis abundant protein D-34	0.990	0.736	0.580	8e-55
357440701	264	Late embryogenesis abundant protein D-34	0.990	0.814	0.580	8e-55
18337	256	embryonic cell protein [Daucus carota]	0.967	0.820	0.591	9e-55

>gi|147815423|emb|CAN76722.1| hypothetical protein VITISV_029641 [Vitis vinifera]

 Score =  231 bits (589), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 131/217 (60%), Positives = 158/217 (72%), Gaps = 2/217 (0%)

Query: 1   MQAAENMALGKTQRGGPAAVMQSAAEANERAGFTSHSTATHIARDQGVTVSESTVADGNR 60
           MQ+AEN  LG TQ+GGPAAVM SAA  NERAG  SH   T +    GVT+S++ VA G+R
Sbjct: 42  MQSAENTVLGNTQKGGPAAVMNSAATKNERAGLVSHEQVTDVVATDGVTISQANVA-GSR 100

Query: 61  IITEAIGDQVLAQYA-TPEVPTRASGAALGRDQSTIGEALEATALSAGDKAVDQRDAAAI 119
           IITEA+GDQV+ +YA  P V   +  +AL RD  TIGEAL+ATALSAG+K VDQ DAAAI
Sbjct: 101 IITEAVGDQVVGEYARPPPVAMTSPASALDRDAITIGEALQATALSAGNKPVDQSDAAAI 160

Query: 120 YAAEARASATNEIKPGGIGSRAQSAATQNERTTFFSDKITISDVSGDATTKLSDDKPVTR 179
             AE RA+ ++E+ PGGI ++AQSAAT N R     +K  +SD+  DAT KL DDKP TR
Sbjct: 161 QVAEMRATGSSEVVPGGIAAQAQSAATTNARVILDENKTKLSDILTDATAKLPDDKPATR 220

Query: 180 EDAEGIISPEIRNKPDMRTTPGGVASSMAAAARLNQS 216
           EDAE +I  E+RN P+M T PGGVA S+AAAARLNQS
Sbjct: 221 EDAERVIGAELRNDPNMVTYPGGVAESVAAAARLNQS 257

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359479623|ref|XP_003632304.1| PREDICTED: late embryogenesis abundant protein D-34-like [Vitis vinifera] gi|296085212|emb|CBI28707.3| unnamed protein product [Vitis vinifera]

 Score =  231 bits (588), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 131/217 (60%), Positives = 158/217 (72%), Gaps = 2/217 (0%)

Query: 1   MQAAENMALGKTQRGGPAAVMQSAAEANERAGFTSHSTATHIARDQGVTVSESTVADGNR 60
           MQ+AEN  LG TQ+GGPAAVM SAA  NERAG  SH   T +    GVT+S++ VA G+R
Sbjct: 42  MQSAENTVLGNTQKGGPAAVMNSAATKNERAGLVSHEQVTDVVATDGVTISQANVA-GSR 100

Query: 61  IITEAIGDQVLAQYA-TPEVPTRASGAALGRDQSTIGEALEATALSAGDKAVDQRDAAAI 119
           IITEA+GDQV+ +YA  P V   +  +AL RD  TIGEAL+ATALSAG+K VDQ DAAAI
Sbjct: 101 IITEAVGDQVVGEYARPPPVAMTSPASALDRDAITIGEALQATALSAGNKPVDQSDAAAI 160

Query: 120 YAAEARASATNEIKPGGIGSRAQSAATQNERTTFFSDKITISDVSGDATTKLSDDKPVTR 179
             AE RA+ ++E+ PGGI ++AQSAAT N R     +K  +SD+  DAT KL DDKP TR
Sbjct: 161 QVAEMRATGSSEVVPGGIAAQAQSAATTNARLILDENKTKLSDILTDATAKLPDDKPATR 220

Query: 180 EDAEGIISPEIRNKPDMRTTPGGVASSMAAAARLNQS 216
           EDAE +I  E+RN P+M T PGGVA S+AAAARLNQS
Sbjct: 221 EDAERVIGAELRNDPNMVTYPGGVAESVAAAARLNQS 257

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449458528|ref|XP_004146999.1| PREDICTED: late embryogenesis abundant protein D-34-like [Cucumis sativus]

 Score =  229 bits (585), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 127/217 (58%), Positives = 157/217 (72%), Gaps = 1/217 (0%)

Query: 1   MQAAENMALGKTQRGGPAAVMQSAAEANERAGFTSHSTATHIARDQGVTVSESTVADGNR 60
           +QAAEN+ LG+T RGGPAAVMQSAA  NERAG   HS  T +A ++GV V+E TV DG R
Sbjct: 43  LQAAENIILGQTPRGGPAAVMQSAANLNERAGLVGHSDVTDVALNEGVNVTE-TVVDGQR 101

Query: 61  IITEAIGDQVLAQYATPEVPTRASGAALGRDQSTIGEALEATALSAGDKAVDQRDAAAIY 120
            + E++G Q++ ++  P VP R+ GA L  D  +IGEALEA+A+SAGDK ++Q DAAAI 
Sbjct: 102 FVVESVGGQIVGRFVQPNVPMRSPGATLDNDSISIGEALEASAVSAGDKPINQSDAAAIQ 161

Query: 121 AAEARASATNEIKPGGIGSRAQSAATQNERTTFFSDKITISDVSGDATTKLSDDKPVTRE 180
           AAE RA+  N I PGGIG+ AQSAAT N R     +K T+ D+  DAT KL  DK VT+E
Sbjct: 162 AAEVRATGENNIIPGGIGAEAQSAATLNTRVMLNENKTTLGDILTDATRKLPGDKTVTKE 221

Query: 181 DAEGIISPEIRNKPDMRTTPGGVASSMAAAARLNQSK 217
           DAE +IS EIRN   M TTPGGVA+S+AAAARLNQ +
Sbjct: 222 DAERVISAEIRNDLKMATTPGGVAASVAAAARLNQQQ 258

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|312599835|gb|ADQ91843.1| late embryogenesis abundant protein group 5 protein [Arachis hypogaea]

 Score =  228 bits (582), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 129/218 (59%), Positives = 159/218 (72%), Gaps = 2/218 (0%)

Query: 1   MQAAENMALGKTQRGGPAAVMQSAAEANERAGFTSHSTATHIARDQGVTVSESTVADGNR 60
           MQA EN ALG+TQ+GGPA+VMQSAA  N  AG       + +A+DQG+ V ES +   NR
Sbjct: 46  MQATENQALGQTQKGGPASVMQSAAVTNVSAGLVGRGDVSSVAKDQGICVLESKIG-VNR 104

Query: 61  IITEAIGDQVLAQYATPEVPTRASGAALGRDQSTIGEALEATALS-AGDKAVDQRDAAAI 119
           +ITE++G+QV+ ++  P VP +  G+AL +D  TIGEALEAT L+ A DK VDQ DAAAI
Sbjct: 105 VITESVGEQVVGEFVEPNVPMKTPGSALDKDAITIGEALEATTLAPASDKPVDQSDAAAI 164

Query: 120 YAAEARASATNEIKPGGIGSRAQSAATQNERTTFFSDKITISDVSGDATTKLSDDKPVTR 179
            AAE RA+  NEI+PGG+ + AQSAAT+N RT     K T+SDV  DA  KL  DK VTR
Sbjct: 165 QAAEMRATGKNEIQPGGLAAVAQSAATKNLRTMGDFQKTTLSDVLTDAKEKLPSDKAVTR 224

Query: 180 EDAEGIISPEIRNKPDMRTTPGGVASSMAAAARLNQSK 217
           EDAEG+I  EIRNK DM+TTPGGVA+S+AAAA LNQ+K
Sbjct: 225 EDAEGVIGAEIRNKADMKTTPGGVAASLAAAATLNQNK 262

Source: Arachis hypogaea

Species: Arachis hypogaea

Genus: Arachis

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449524738|ref|XP_004169378.1| PREDICTED: late embryogenesis abundant protein D-34-like [Cucumis sativus]

 Score =  228 bits (582), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 127/217 (58%), Positives = 156/217 (71%), Gaps = 1/217 (0%)

Query: 1   MQAAENMALGKTQRGGPAAVMQSAAEANERAGFTSHSTATHIARDQGVTVSESTVADGNR 60
           +QAAEN+ LG+T RGGPAAVMQSAA  NERAG   HS  T +A ++GV V+E TV DG R
Sbjct: 43  LQAAENIILGQTPRGGPAAVMQSAANLNERAGLVGHSDVTDVALNEGVNVTE-TVVDGQR 101

Query: 61  IITEAIGDQVLAQYATPEVPTRASGAALGRDQSTIGEALEATALSAGDKAVDQRDAAAIY 120
            + E++G Q++ ++  P VP R+ GA L  D  +IGEALEA+A+SAGDK + Q DAAAI 
Sbjct: 102 FVVESVGGQIVGRFVQPNVPMRSPGATLDNDSISIGEALEASAVSAGDKPITQSDAAAIQ 161

Query: 121 AAEARASATNEIKPGGIGSRAQSAATQNERTTFFSDKITISDVSGDATTKLSDDKPVTRE 180
           AAE RA+  N I PGGIG+ AQSAAT N R     +K T+ D+  DAT KL  DK VT+E
Sbjct: 162 AAEVRATGENNIIPGGIGAEAQSAATLNTRVMLNENKTTLGDILTDATRKLPGDKTVTKE 221

Query: 181 DAEGIISPEIRNKPDMRTTPGGVASSMAAAARLNQSK 217
           DAE +IS EIRN   M TTPGGVA+S+AAAARLNQ +
Sbjct: 222 DAERVISAEIRNDLKMATTPGGVAASVAAAARLNQQQ 258

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356536775|ref|XP_003536910.1| PREDICTED: late embryogenesis abundant protein D-34-like [Glycine max]

 Score =  227 bits (579), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 130/217 (59%), Positives = 160/217 (73%), Gaps = 2/217 (0%)

Query: 1   MQAAENMALGKTQRGGPAAVMQSAAEANERAGFTSHSTATHIARDQGVTVSESTVADGNR 60
           MQA EN ALG+TQ+GGPA+VMQSAA  N RAG       + +AR++GV+V+E+ V   +R
Sbjct: 41  MQATENQALGQTQKGGPASVMQSAATENLRAGVVGRQDISDVARNEGVSVTETKVG-CHR 99

Query: 61  IITEAIGDQVLAQYATPEVPTRASGAALGRDQSTIGEALEATALS-AGDKAVDQRDAAAI 119
           +ITE +G  V+ Q+  P+VP    G AL RD  TIGEALEA+A++ A DK VD+ DAAAI
Sbjct: 100 VITEFVGRHVVGQFVEPDVPMNTPGTALERDAITIGEALEASAIAGASDKPVDESDAAAI 159

Query: 120 YAAEARASATNEIKPGGIGSRAQSAATQNERTTFFSDKITISDVSGDATTKLSDDKPVTR 179
            AAE RA+  NE +PGG+G+RAQSAAT+N RT   S K T+SDV  DA  KL  DK VTR
Sbjct: 160 QAAEMRATGKNETEPGGLGARAQSAATRNTRTVSHSHKTTLSDVLTDAKEKLPADKAVTR 219

Query: 180 EDAEGIISPEIRNKPDMRTTPGGVASSMAAAARLNQS 216
           EDAEG+I  E+RNK DMRTTPGGVA+SMAAAA LNQ+
Sbjct: 220 EDAEGVIGAELRNKLDMRTTPGGVAASMAAAATLNQN 256

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|57506542|dbj|BAD86645.1| ECP31 protein [Daucus carota]

 Score =  223 bits (567), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 129/216 (59%), Positives = 153/216 (70%), Gaps = 4/216 (1%)

Query: 1   MQAAENMALGKTQRGGPAAVMQSAAEANERAGFTSHSTATHIARDQGVTVSESTVADGNR 60
           MQAAENM LGKTQ+GGPA+VMQSAA AN + G       T IA +QGVT+SE+ +A G R
Sbjct: 40  MQAAENMVLGKTQKGGPASVMQSAAAANLQRGVVGRHEGTPIASEQGVTISEAEIA-GTR 98

Query: 61  IITEAIGDQVLAQYATP-EVPTRASGAALGRDQSTIGEALEATALSAGDKAVDQRDAAAI 119
           IITEA+G QV+ QY  P +    +   ALG D  TIGEALE TAL+AGDK VDQ DAAAI
Sbjct: 99  IITEAVGGQVVGQYLEPGKFKMTSPAGALGSDSITIGEALETTALTAGDKPVDQSDAAAI 158

Query: 120 YAAEARASATNEIKPGGIGSRAQSAATQNERTTFFSDKITISDVSGDATTKLSDDKPVTR 179
            AAE RAS      PGG+ + AQSAA  N RT   + K  + DV  DA+ +L++DK VTR
Sbjct: 159 QAAEVRASGYAH--PGGVAAAAQSAADYNARTMNVASKTKLGDVLADASIRLAEDKAVTR 216

Query: 180 EDAEGIISPEIRNKPDMRTTPGGVASSMAAAARLNQ 215
           EDAEG++  E+RN P+M T PGGVASSMAAAARLNQ
Sbjct: 217 EDAEGVVGAEVRNNPEMMTYPGGVASSMAAAARLNQ 252

Source: Daucus carota

Species: Daucus carota

Genus: Daucus

Family: Apiaceae

Order: Apiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357440699|ref|XP_003590627.1| Late embryogenesis abundant protein D-34 [Medicago truncatula] gi|355479675|gb|AES60878.1| Late embryogenesis abundant protein D-34 [Medicago truncatula]

 Score =  219 bits (557), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 126/217 (58%), Positives = 156/217 (71%), Gaps = 2/217 (0%)

Query: 1   MQAAENMALGKTQRGGPAAVMQSAAEANERAGFTSHSTATHIARDQGVTVSESTVADGNR 60
           MQA EN ALG+TQ+G PA+VMQSAA  N  AG  SH   + IA++QG++VS++ V   NR
Sbjct: 45  MQATENQALGQTQKGSPASVMQSAAAVNTAAGLVSHGDISDIAKNQGMSVSKTKVG-ANR 103

Query: 61  IITEAIGDQVLAQYATPEVPTRASGAALGRDQSTIGEALEATALS-AGDKAVDQRDAAAI 119
           +ITE++G QV+ Q+  P+VP    G  L ++  TIGEALEA+ALS AGDK +DQ DAAAI
Sbjct: 104 VITESVGSQVVGQFVEPDVPMNDPGLVLDKNAITIGEALEASALSQAGDKPLDQSDAAAI 163

Query: 120 YAAEARASATNEIKPGGIGSRAQSAATQNERTTFFSDKITISDVSGDATTKLSDDKPVTR 179
            AAE RA+  N  +PGG+G+ AQSAAT+N RT     K T+ DV   A  KL  DK VTR
Sbjct: 164 QAAEMRATGKNHTEPGGLGAIAQSAATRNTRTMPDLQKTTLGDVVSGAREKLGSDKAVTR 223

Query: 180 EDAEGIISPEIRNKPDMRTTPGGVASSMAAAARLNQS 216
           EDAEG+I  E+RNK DMRT PGGVA+SMAAAA LNQ+
Sbjct: 224 EDAEGVIGAELRNKADMRTKPGGVAASMAAAATLNQN 260

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357440701|ref|XP_003590628.1| Late embryogenesis abundant protein D-34 [Medicago truncatula] gi|355479676|gb|AES60879.1| Late embryogenesis abundant protein D-34 [Medicago truncatula]

 Score =  219 bits (557), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 126/217 (58%), Positives = 156/217 (71%), Gaps = 2/217 (0%)

Query: 1   MQAAENMALGKTQRGGPAAVMQSAAEANERAGFTSHSTATHIARDQGVTVSESTVADGNR 60
           MQA EN ALG+TQ+G PA+VMQSAA  N  AG  SH   + IA++QG++VS++ V   NR
Sbjct: 45  MQATENQALGQTQKGSPASVMQSAAAVNTAAGLVSHGDISDIAKNQGMSVSKTKVG-ANR 103

Query: 61  IITEAIGDQVLAQYATPEVPTRASGAALGRDQSTIGEALEATALS-AGDKAVDQRDAAAI 119
           +ITE++G QV+ Q+  P+VP    G  L ++  TIGEALEA+ALS AGDK +DQ DAAAI
Sbjct: 104 VITESVGSQVVGQFVEPDVPMNDPGLVLDKNAITIGEALEASALSQAGDKPLDQSDAAAI 163

Query: 120 YAAEARASATNEIKPGGIGSRAQSAATQNERTTFFSDKITISDVSGDATTKLSDDKPVTR 179
            AAE RA+  N  +PGG+G+ AQSAAT+N RT     K T+ DV   A  KL  DK VTR
Sbjct: 164 QAAEMRATGKNHTEPGGLGAIAQSAATRNTRTMPDLQKTTLGDVVSGAREKLGSDKAVTR 223

Query: 180 EDAEGIISPEIRNKPDMRTTPGGVASSMAAAARLNQS 216
           EDAEG+I  E+RNK DMRT PGGVA+SMAAAA LNQ+
Sbjct: 224 EDAEGVIGAELRNKADMRTKPGGVAASMAAAATLNQN 260

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18337|emb|CAA43046.1| embryonic cell protein [Daucus carota]

 Score =  219 bits (557), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 129/218 (59%), Positives = 154/218 (70%), Gaps = 8/218 (3%)

Query: 1   MQAAENMALGKTQRGGPAAVMQSAAEANERAGFTSHSTATHIARDQGVTVSESTVADGNR 60
           MQAAENM LGKTQ+GGPA+VMQSAA AN + G       T IA +QGVT+SE+ +A G R
Sbjct: 40  MQAAENMVLGKTQKGGPASVMQSAAAANLQRGVVGPHEGTPIASEQGVTISEAEIA-GTR 98

Query: 61  IITEAIGDQVLAQYATP---EVPTRASGAALGRDQSTIGEALEATALSAGDKAVDQRDAA 117
           IITEA+G QV+ QY  P   ++P+ A    LG D  TIGEALE TAL+AGDK VDQ DAA
Sbjct: 99  IITEAVGGQVVGQYLEPGKFKMPSPA--GVLGSDSITIGEALETTALTAGDKPVDQSDAA 156

Query: 118 AIYAAEARASATNEIKPGGIGSRAQSAATQNERTTFFSDKITISDVSGDATTKLSDDKPV 177
           AI AAE RAS      PGG+ + AQSAA  N RT   + K  + DV  D + +L++DK V
Sbjct: 157 AIQAAEVRASGY--AYPGGVAAAAQSAADYNARTMNVASKTKLGDVLADRSIRLAEDKAV 214

Query: 178 TREDAEGIISPEIRNKPDMRTTPGGVASSMAAAARLNQ 215
           TREDAEG++  E+RN P+M T PGGVASSMAAAARLNQ
Sbjct: 215 TREDAEGVVGAEVRNNPEMMTYPGGVASSMAAAARLNQ 252

Source: Daucus carota

Species: Daucus carota

Genus: Daucus

Family: Apiaceae

Order: Apiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	217
TAIR|locus:2077081	262	AT3G22490 "AT3G22490" [Arabido	0.986	0.816	0.506	1e-45
TAIR|locus:2076996	256	ATECP31 "AT3G22500" [Arabidops	0.976	0.828	0.454	7.8e-39
TAIR|locus:2007529	182	RAB28 "responsive to abscisic	0.700	0.835	0.452	4.4e-29
TAIR|locus:2143789	192	AT5G27980 "AT5G27980" [Arabido	0.695	0.786	0.418	5.9e-25
TAIR|locus:2154252	159	AT5G53270 "AT5G53270" [Arabido	0.677	0.924	0.335	7.7e-16
TAIR|locus:2154242	176	AT5G53260 "AT5G53260" [Arabido	0.631	0.778	0.330	3.3e-15

TAIR|locus:2077081 AT3G22490 "AT3G22490" [Arabidopsis thaliana (taxid:3702)]

 Score = 480 (174.0 bits), Expect = 1.0e-45, P = 1.0e-45
 Identities = 112/221 (50%), Positives = 139/221 (62%)

Query:     1 MQAAENMALGKTQRGGPAAVMQSAAEANERAGFTSHSTATHIARDQGVTVSESTVADGNR 60
             MQAAE    G TQ+GG AAVMQSAA AN+R GF      T +A ++GVTV+++ V  G R
Sbjct:    39 MQAAETRVFGHTQKGGAAAVMQSAATANKRGGFVHPGDTTDLAAERGVTVAQTDVP-GAR 97

Query:    61 IITEAIGDQVLAQYATPE-VPTRASGAA--LGRD-QS--TIGEALEATALSAGDKAVDQR 114
             + TE +G QV+ QY  P  V T A+  A  +G   QS  TIGEALEAT  +AG+K VDQ 
Sbjct:    98 VTTEFVGGQVVGQYVEPRPVATAAAMEAEVVGLSLQSAITIGEALEATVQTAGNKPVDQS 157

Query:   115 DXXXXXXXXXXXXXTNEIKPGGIGSRAQSAATQNERTTFFSDKITISDVSGDATTKLSDD 174
             D             TN I PGGI + AQSAA  N       DKI + DV   AT KL+ D
Sbjct:   158 DAAAIQAAEVRACGTNVIAPGGIAASAQSAANHNATIDRDEDKIKLIDVLAGATGKLAAD 217

Query:   175 KPVTREDAEGIISPEIRNKPDMRTTPGGVASSMAAAARLNQ 215
             K VTR+DAEG++S E+RN P++ T PGGVA+S+ AAARLN+
Sbjct:   218 KAVTRQDAEGVVSAELRNNPNLSTHPGGVAASITAAARLNE 258

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0009793 "embryo development ending in seed dormancy" evidence=ISS

TAIR|locus:2076996 ATECP31 "AT3G22500" [Arabidopsis thaliana (taxid:3702)]

 Score = 415 (151.1 bits), Expect = 7.8e-39, P = 7.8e-39
 Identities = 99/218 (45%), Positives = 122/218 (55%)

Query:     1 MQAAENMALGKTQRGGPAAVMQSAAEANERAGFTSHSTATHIARDQGVTVSESTVADGNR 60
             MQ+AE    G TQ+GGPAAVMQSAA  N R GF      T +  ++G TV E TV     
Sbjct:    38 MQSAETHVFGHTQKGGPAAVMQSAATTNIRGGFVHPDDKTELVAERGATV-EQTVPAAT- 95

Query:    61 IITEAIGDQVLAQYATPE---VPTRASGAALGRDQSTIGEALEATALSAGDKAVDQRDXX 117
             + TE +G QV+ Q+  P       R    AL +   TIGEALEAT  +AG+K VDQ D  
Sbjct:    96 VTTEFVGGQVVGQHVEPRRVVAAARTDEEAL-QSTITIGEALEATVKTAGNKPVDQSDAA 154

Query:   118 XXXXXXXXXXXTNEIKPGGIGSRAQSAATQNERTTFFSDKITISDVSGDATTKLSDDKPV 177
                        TN I   G+ + AQSAA  N        KI + DV   A  KLS D+ V
Sbjct:   155 AIQAAEMRASGTNVIALAGVAASAQSAADHNATVDRDERKIKLRDVLTGAAGKLSADRAV 214

Query:   178 TREDAEGIISPEIRNKPDMRTTPGGVASSMAAAARLNQ 215
             TREDAEG++S E+RN P + T PGGVA+S+  AARLN+
Sbjct:   215 TREDAEGVVSAEMRNNPKLCTHPGGVAASLTVAARLNE 252

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0009793 "embryo development ending in seed dormancy" evidence=ISS

GO:0016114 "terpenoid biosynthetic process" evidence=RCA

TAIR|locus:2007529 RAB28 "responsive to abscisic acid 28" [Arabidopsis thaliana (taxid:3702)]

 Score = 323 (118.8 bits), Expect = 4.4e-29, P = 4.4e-29
 Identities = 72/159 (45%), Positives = 98/159 (61%)

Query:    61 IITEAIGDQVLAQ----YATPEVPTRASGAALGRDQSTIGEALEATALSAGDKAVDQRDX 116
             I+    GD V  +    ++ P+ PT A+  ++  D  TIGEALEATALS GDK VD+RD 
Sbjct:    25 IVFSVSGDDVARKQGDSFSQPD-PTVATMGSV--DTVTIGEALEATALSLGDKPVDRRDA 81

Query:   117 XXXXXXXXXXXXTNEIKPGGIGSRAQSAATQNERTTFFSDKITISDVSGDATTKLSDDKP 176
                          ++ +PGG+   AQ+AAT NE+T    DK+ I+D+  DA  +L  DK 
Sbjct:    82 AAIQAAETRATGESKGRPGGLAVAAQAAATTNEQTVSEEDKVNIADILTDAAERLPGDKV 141

Query:   177 VTREDAEGIISPEIRNKPDMRTTPGGVASSMAAAARLNQ 215
             VT EDAE ++  E+R+  +M+TTPGGVA SM+A ARLNQ
Sbjct:   142 VTSEDAEAVVGAELRSSSEMKTTPGGVADSMSAGARLNQ 180

GO:0005737 "cytoplasm" evidence=ISM

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0005634 "nucleus" evidence=ISS;IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0006873 "cellular ion homeostasis" evidence=IMP

GO:0009845 "seed germination" evidence=IMP

GO:0010226 "response to lithium ion" evidence=IMP

TAIR|locus:2143789 AT5G27980 "AT5G27980" [Arabidopsis thaliana (taxid:3702)]

 Score = 284 (105.0 bits), Expect = 5.9e-25, P = 5.9e-25
 Identities = 67/160 (41%), Positives = 90/160 (56%)

Query:    61 IITEAIGDQVLAQYATPEV---PTRASGAALGRDQSTIGEALEATALSAGDKAVDQRDXX 117
             ++ EA G+Q   +    +V   P ++ G        TIGEALEA  L+AG+K V+  D  
Sbjct:    39 VVAEASGEQAEGEVNQKKVVANPLKSEGTI------TIGEALEAAVLTAGNKPVEWSDAA 92

Query:   118 XXXXXXXXXXXTNEIKPGGIGSRAQSAATQNERTTFFSDKITISDVSGDATTKLSDDKPV 177
                           I PGG+ + AQSAAT N R      K T++DV   A++KL  DK  
Sbjct:    93 AIQAAEVRATGRTNIMPGGVAASAQSAATLNARIGSDDTKTTLADVLTGASSKLPSDKAA 152

Query:   178 TREDAEGIISPEIRNKPDMRTTPGGVASSMAAAARLNQSK 217
             TR+DAEG+   E+RN P + T P GVA+S+AAAAR+NQSK
Sbjct:   153 TRKDAEGVTGAEMRNDPHLTTYPTGVAASVAAAARINQSK 192

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0009860 "pollen tube growth" evidence=RCA

TAIR|locus:2154252 AT5G53270 "AT5G53270" [Arabidopsis thaliana (taxid:3702)]

 Score = 198 (74.8 bits), Expect = 7.7e-16, P = 7.7e-16
 Identities = 50/149 (33%), Positives = 78/149 (52%)

Query:    67 GDQVLAQYA-TPEVPTRASGAALGRDQSTIGEALEATALSAGDKAVDQRDXXXXXXXXXX 125
             G  +L QYA T E  + A+ A +GR  +T+ EAL+A A++ G K V+  D          
Sbjct:     4 GFGLLKQYAGTTEQISTAAEALVGRS-TTLTEALKAAAINVGRKPVETTDLAAIKEVEAR 62

Query:   126 XXXTNEIKPGGIGSRAQSAATQNERTTFFSDKITISDVSGDATTKLSDDKPVTREDAEGI 185
                 +    GG+ + A  A  +N++    ++K  + DV  +   K++ D+ VT EDAE +
Sbjct:    63 AIGGDIESDGGVTAVASKAVARNQKIGEDNEKTNLGDVIAEIDVKVTRDREVTSEDAEAV 122

Query:   186 ISPEIRNKPDMRTTPGGVASSMAAAARLN 214
             I  E+ + P     PGGVA S+ AA +LN
Sbjct:   123 IRAELNHSPFNNIIPGGVAESVTAAYKLN 151

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0007275 "multicellular organismal development" evidence=ISS

TAIR|locus:2154242 AT5G53260 "AT5G53260" [Arabidopsis thaliana (taxid:3702)]

 Score = 192 (72.6 bits), Expect = 3.3e-15, P = 3.3e-15
 Identities = 46/139 (33%), Positives = 73/139 (52%)

Query:    76 TPEVPTRASGAALGRDQSTIGEALEATALSAGDKAVDQRDXXXXXXXXXXXXXTNEIKPG 135
             T E+ T A  A +GR  +T+ EAL+A +++ G K V+  D              +    G
Sbjct:    34 TEEISTAAE-ALIGRS-TTLTEALKAASMNVGHKPVETTDVAAIKEVETRAIGGDIESEG 91

Query:   136 GIGSRAQSAATQNERTTFFSDKITISDVSGDATTKLSDDKPVTREDAEGIISPEIRNKPD 195
             G+ + A  A  +N++    ++K  + DV  +   K++ D+ VT EDAE +I  E+ + P 
Sbjct:    92 GVTAVASKAVARNQKIGKDNEKTNLGDVIAEIDVKVTRDREVTSEDAEAVIRAELNHSPF 151

Query:   196 MRTTPGGVASSMAAAARLN 214
                 PGGVA S+AAA +LN
Sbjct:   152 NNIIPGGVAESVAAAYKLN 170


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.306   0.121   0.319    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      217       204   0.00094  111 3  10 23  0.46    33
                                                     31  0.46    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  6
  No. of states in DFA:  544 (58 KB)
  Total size of DFA:  168 KB (2100 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  25.03u 0.11s 25.14t   Elapsed:  00:00:02
  Total cpu time:  25.03u 0.11s 25.14t   Elapsed:  00:00:02
  Start:  Tue May 21 01:41:25 2013   End:  Tue May 21 01:41:27 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0007275 "multicellular organismal development" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P09444	LEA34_GOSHI	No assigned EC number	0.5596	0.9815	0.8068	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00023739001 SubName- Full=Chromosome chr7 scaffold_31, whole genome shotgun sequence; (259 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	217
pfam04927	62	pfam04927, SMP, Seed maturation protein	1e-11
pfam04927	62	pfam04927, SMP, Seed maturation protein	5e-10

>gnl|CDD|203123 pfam04927, SMP, Seed maturation protein

 Score = 57.7 bits (140), Expect = 1e-11
 Identities = 33/57 (57%), Positives = 41/57 (71%)

Query: 94  TIGEALEATALSAGDKAVDQRDAAAIYAAEARASATNEIKPGGIGSRAQSAATQNER 150
           TIG+ LEATA   GDK V + DAAA+ +AEARA+  N  +PGG+ + AQSAA  NER
Sbjct: 3   TIGDVLEATAGLVGDKPVTREDAAAVQSAEARATGGNVTRPGGVAAAAQSAAALNER 59

Plant seed maturation protein. Length = 62

>gnl|CDD|203123 pfam04927, SMP, Seed maturation protein

 Score = 53.1 bits (128), Expect = 5e-10
 Identities = 31/59 (52%), Positives = 37/59 (62%), Gaps = 1/59 (1%)

Query: 157 KITISDVSGDATTKLSDDKPVTREDAEGIISPEIRNKPDMRTTPGGVASSMAAAARLNQ 215
           KITI DV  +AT  L  DKPVTREDA  + S E R      T PGGVA++  +AA LN+
Sbjct: 1   KITIGDVL-EATAGLVGDKPVTREDAAAVQSAEARATGGNVTRPGGVAAAAQSAAALNE 58

Plant seed maturation protein. Length = 62

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	217
PF04927	62	SMP: Seed maturation protein; InterPro: IPR007011	99.82
PF04927	62	SMP: Seed maturation protein; InterPro: IPR007011	99.79

>PF04927 SMP: Seed maturation protein; InterPro: IPR007011 Late embryogenesis abundant (LEA) proteins accumulate to high levels during the last stage of seed formation (when a natural desiccation of the seed tissues takes place) and during periods of water deficit in vegetative organs

Probab=99.82  E-value=1.5e-20  Score=136.34  Aligned_cols=62  Identities=52%  Similarity=0.659  Sum_probs=59.0

Q ss_pred             CchHhHHHHHhhhhhcCCCCChhHHHHHHHHHHhhccCCCCCCCcHHHHHhhHHHhcccccC
Q 027886           92 QSTIGEALEATALSAGDKAVDQRDAAAIYAAEARASATNEIKPGGIGSRAQSAATQNERTTF  153 (217)
Q Consensus        92 ~itiGealeaaa~~~g~kPV~~~DAAaiqaAE~ratG~~~~~~GG~AA~aQsAA~~N~r~~~  153 (217)
                      +|||||+|++++..+++|||+++||+.||+||+|.+|.+.++|||++++||||+++|++.++
T Consensus         1 ~vt~gdvl~A~a~~~~~kpVt~eDAa~iqsAE~r~~g~~~~~~GGvAa~~qsAA~~N~~~~~   62 (62)
T PF04927_consen    1 KVTIGDVLEAAAGLPGDKPVTPEDAAAIQSAEARATGGAQTQPGGVAAAAQSAADKNERAGR   62 (62)
T ss_pred             CccHHHHHHHHhcccccCCCCHHHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHhhhccC
Confidence            59999999988888999999999999999999999999889999999999999999998764

LEA proteins have been grouped into at least six families on the basis of sequence similarity. Although significant similarity has not been detected between the members of the different classes, a unifying and outstanding feature of these proteins is their high hydrophilicity and high percentage of glycines. Amino acid sequence analysis allows one to predict that these proteins exist primarily as random coils. This property has been confirmed in few cases with purified proteins and is supported by the fact that proteins of this type do not coagulate upon heating. LEA protein families have been identified in a wide range of different plant species to the extent that they can be considered ubiquitous in plants. Moreover, it has been shown that members of at least one of the LEA protein families, the so-called dehydrins, are present in a range of photosynthetic organisms, including lower plants, algae, and cyanobacteria. In addition similar proteins, the hydrophilins are induced in a variety of different taxons, of non-photosynthetic organsims, in response to osmotic stress. All of these proteins have a high hydrophilicity index, generally greater than 1.0 []. This conserved region identifies a set of plant seed maturation proteins described as LEA D34.

>PF04927 SMP: Seed maturation protein; InterPro: IPR007011 Late embryogenesis abundant (LEA) proteins accumulate to high levels during the last stage of seed formation (when a natural desiccation of the seed tissues takes place) and during periods of water deficit in vegetative organs

Probab=99.79  E-value=7.8e-20  Score=132.55  Aligned_cols=59  Identities=47%  Similarity=0.628  Sum_probs=57.3

Q ss_pred             cchhhhhhhhccccCCCCCCCCHhhHhhhhchhhhcCCCCCCCCCcHHHHHHHHHHhccC
Q 027886          157 KITISDVSGDATTKLSDDKPVTREDAEGIISPEIRNKPDMRTTPGGVASSMAAAARLNQS  216 (217)
Q Consensus       157 kitigdvL~~At~kl~~Dk~vt~eDAaaV~aAE~R~~g~~~~~pGGVAaa~qaAA~~N~~  216 (217)
                      |||||||| +|+.++++|||||+|||++||+||+|++|...+.||||+++||+||++|++
T Consensus         1 ~vt~gdvl-~A~a~~~~~kpVt~eDAa~iqsAE~r~~g~~~~~~GGvAa~~qsAA~~N~~   59 (62)
T PF04927_consen    1 KVTIGDVL-EAAAGLPGDKPVTPEDAAAIQSAEARATGGAQTQPGGVAAAAQSAADKNER   59 (62)
T ss_pred             CccHHHHH-HHHhcccccCCCCHHHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHhhh
Confidence            69999999 999999999999999999999999999999889999999999999999986

LEA proteins have been grouped into at least six families on the basis of sequence similarity. Although significant similarity has not been detected between the members of the different classes, a unifying and outstanding feature of these proteins is their high hydrophilicity and high percentage of glycines. Amino acid sequence analysis allows one to predict that these proteins exist primarily as random coils. This property has been confirmed in few cases with purified proteins and is supported by the fact that proteins of this type do not coagulate upon heating. LEA protein families have been identified in a wide range of different plant species to the extent that they can be considered ubiquitous in plants. Moreover, it has been shown that members of at least one of the LEA protein families, the so-called dehydrins, are present in a range of photosynthetic organisms, including lower plants, algae, and cyanobacteria. In addition similar proteins, the hydrophilins are induced in a variety of different taxons, of non-photosynthetic organsims, in response to osmotic stress. All of these proteins have a high hydrophilicity index, generally greater than 1.0 []. This conserved region identifies a set of plant seed maturation proteins described as LEA D34.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	217
3cgi_A	124	Propanediol utilization protein PDUU; circular per	81.42

>3cgi_A Propanediol utilization protein PDUU; circular permutation, beta barrel, bacterial microcompartmen propanediol, signaling protein; 1.80A {Salmonella typhimurium}

Probab=81.42  E-value=0.74  Score=36.51  Aligned_cols=23  Identities=22%  Similarity=0.200  Sum_probs=20.1

Q ss_pred             CeeEeeeecc-eeceeeccCCCCc
Q 027886           59 NRIITEAIGD-QVLAQYATPEVPT   81 (217)
Q Consensus        59 ~RivTE~VaG-QVvgq~~~p~~~~   81 (217)
                      -|||+|||+| |++..++-|.|..
T Consensus         8 ~r~i~e~V~gkqv~~~~VIan~~~   31 (124)
T 3cgi_A            8 DRMIQEYVPGKQVTLAHLIANPGK   31 (124)
T ss_dssp             CEEEEEECCCCEEEEEEEESSCCH
T ss_pred             eeEEEeeeCCEEEEEeeeeCCCCH
Confidence            4999999997 9999999988744

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00