Citrus Sinensis ID: 027992

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-----
Protein Sequence
MLVMCHSFLFCGLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAPEDVEKIESFMRERNLS
Secondary Structure (PSIPRED)
cEEEEEccccccEEEEcccHHHHHHHHHccccEEEcccccccccHHHHHHHHHccccccEEEEEccccccccHHHHHHHHHHHHHcccccEEEccccccccccccccccEEEEcccccEEEEccccccccccccccccccccccEEEEEccHHHHHHcccccccccHHHHHHHHHHHHHccccEEEEEEcccccccccHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHcccEEEEEcccHHHHHHHHHcccEEEEEccccccHHHHHHHHHHHHcccccEEEEEccccccccHHHHHHHHHHHHHccccHEEEEcccccHHHHcccccEEEEEccccEEEEEEcccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccEEEEEEEEccccccccHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
MLVMCHSFLFCGLVVATDDEKIAECCQQFGadvimtsescrngTERCNEALQKLEKKYDIVVNiqgdepliepeIIDGVVKALQAAPDAVFSTAVtslkpedafdpnrvkcvvdnhgyaiyfsrglipynksgkvnpqfpyllhlgiqsydsnflkiypglhptplqlEEDLEQLKVLENGYKMKVIKvdheahgvdapedvEKIESFMRERNLS
Flexible Loop (DISEMBL)
MLVMCHSFLFCGLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTslkpedafdpnrvKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVdheahgvdapedvekIESFMRERNLS
Low Complexity Region (SEG)
MLVMCHSFLFCGLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAPEDVEKIESFMRERNLS
Disordered region (IsUnstruct)
*LVMCHSFLFCGLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHE***********************
Disordered Region (DISOPRED)
MLV***SFLFCGLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAPEDVEKIESFMRER***
Disordered Region (DISEMBL)
MLVMCHSFLFCGLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAPEDVEKIES********
Disordered Region (DISPRO)
MLVMCHSFLFCGLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAPEDVEKIESFMRER***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MLVMCHSFLFCGLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAPEDVEKIESFMRERNLS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	215	2.2.26 [Sep-21-2011]
Q9C920	290	3-deoxy-manno-octulosonat	yes	no	0.944	0.7	0.881	1e-104
Q6MD00	259	3-deoxy-manno-octulosonat	yes	no	0.934	0.776	0.475	2e-42
Q8RFA8	245	3-deoxy-manno-octulosonat	yes	no	0.925	0.812	0.426	4e-40
A6L9D4	251	3-deoxy-manno-octulosonat	yes	no	0.916	0.784	0.417	3e-38
C5CKW0	257	3-deoxy-manno-octulosonat	yes	no	0.902	0.754	0.412	8e-38
Q9PKL1	254	3-deoxy-manno-octulosonat	yes	no	0.893	0.755	0.44	2e-37
B0BBG2	254	3-deoxy-manno-octulosonat	yes	no	0.893	0.755	0.44	2e-37
B0B9T2	254	3-deoxy-manno-octulosonat	yes	no	0.893	0.755	0.44	2e-37
P0CD75	254	3-deoxy-manno-octulosonat	yes	no	0.893	0.755	0.44	2e-37
Q3KMI0	254	3-deoxy-manno-octulosonat	yes	no	0.893	0.755	0.44	2e-37

>sp|Q9C920|KDSB_ARATH 3-deoxy-manno-octulosonate cytidylyltransferase, mitochondrial OS=Arabidopsis thaliana GN=KDSB PE=1 SV=1

 Score =  379 bits (972), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 179/203 (88%), Positives = 189/203 (93%)

Query: 13  LVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIE 72
           +VVATDDE+IAECC+ FGADVIMTSESCRNGTERCNEAL+KLEKKYD+VVNIQGDEPLIE
Sbjct: 88  IVVATDDERIAECCRGFGADVIMTSESCRNGTERCNEALEKLEKKYDVVVNIQGDEPLIE 147

Query: 73  PEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKS 132
           PEIIDGVVKALQ  PDAVFSTAVTSLKPED  DPNRVKCVVDN GYAIYFSRGLIPYNKS
Sbjct: 148 PEIIDGVVKALQVTPDAVFSTAVTSLKPEDGLDPNRVKCVVDNRGYAIYFSRGLIPYNKS 207

Query: 133 GKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHE 192
           GKVNP FPY+LHLGIQS+DS FLK+Y  L PTPLQ EEDLEQLKVLENGYKMKVIKVDHE
Sbjct: 208 GKVNPDFPYMLHLGIQSFDSKFLKVYSELQPTPLQQEEDLEQLKVLENGYKMKVIKVDHE 267

Query: 193 AHGVDAPEDVEKIESFMRERNLS 215
           AHGVD P+DVEKIES MRERN+S
Sbjct: 268 AHGVDTPDDVEKIESLMRERNMS 290

Catalyzes the production of the sugar nucleotide CMP-3-deoxy-D-manno-octulosonate (CMP-KDO). CTP is the preferred nucleotide donor, but it can partially be replaced with UTP. Activates KDO during the biosynthesis of rhamnogalacturonan II (RG-II), a structurally complex pectic polysaccharide of the primary cell wall. RG-II is essential for the cell wall integrity of rapidly growing tissues and pollen tube growth and elongation.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 7EC: .EC: 3EC: 8

>sp|Q6MD00|KDSB_PARUW 3-deoxy-manno-octulosonate cytidylyltransferase OS=Protochlamydia amoebophila (strain UWE25) GN=kdsB PE=3 SV=1

 Score =  172 bits (436), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 97/204 (47%), Positives = 125/204 (61%), Gaps = 3/204 (1%)

Query: 13  LVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKY--DIVVNIQGDEPL 70
           L+VATDDE+I E  + F   V+MTSE C  GT+R  E L    +      +VNIQGDEP 
Sbjct: 53  LIVATDDERIFEHVRSFNGKVVMTSEQCPTGTDRLAEVLSLYPEWMHATAIVNIQGDEPC 112

Query: 71  IEPEIIDGVVKALQAAPDAVFSTAVTSL-KPEDAFDPNRVKCVVDNHGYAIYFSRGLIPY 129
           + P  I+  V+AL   P    ST VT L   E+A + + VKCV+D  G A+YFSR LIP 
Sbjct: 113 LNPLTINLAVQALVNDPQGQVSTIVTPLLDEEEAKNSSIVKCVMDQQGNALYFSRALIPS 172

Query: 130 NKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKV 189
           NK+        Y  HLG+  Y  +F+  Y  L  TPLQLEEDLEQLKVLE+GY++KV  V
Sbjct: 173 NKTNSFKNGAIYFRHLGLYVYRPSFIINYQKLPSTPLQLEEDLEQLKVLEHGYRIKVAIV 232

Query: 190 DHEAHGVDAPEDVEKIESFMRERN 213
           D    GVD PED+ K+E ++ ++N
Sbjct: 233 DQANIGVDTPEDIHKVEEWLCKQN 256

Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria.

Protochlamydia amoebophila (strain UWE25) (taxid: 264201)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 3

EC: 8

>sp|Q8RFA8|KDSB_FUSNN 3-deoxy-manno-octulosonate cytidylyltransferase OS=Fusobacterium nucleatum subsp. nucleatum (strain ATCC 25586 / CIP 101130 / JCM 8532 / LMG 13131) GN=kdsB PE=3 SV=1

 Score =  164 bits (415), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 87/204 (42%), Positives = 126/204 (61%), Gaps = 5/204 (2%)

Query: 12  GLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLI 71
            L+VATDDE+I      FG   IMTS++  NGT R  E  +K+  +YD ++NIQGDEPLI
Sbjct: 44  SLIVATDDERIYNEVINFGGQAIMTSKNHTNGTSRIAEVCEKM-TEYDTIINIQGDEPLI 102

Query: 72  EPEIIDGVVKALQAAPDAVFSTAVTSL-KPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYN 130
           E E+I+ +++  +   D   +T    L   E+  +PN VK V D + YAIYFSR +IPY 
Sbjct: 103 EYEMINSLIETFKENKDLKMATLKHKLLNKEEIKNPNNVKVVCDKNDYAIYFSRSVIPYP 162

Query: 131 KSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVD 190
           +    N    Y  H+GI  Y  +F+  Y  +  TPL+  E LEQL+VLENGYK+KV++  
Sbjct: 163 RK---NGNISYFKHIGIYGYKRDFVIEYSKMLATPLEEIESLEQLRVLENGYKIKVLETT 219

Query: 191 HEAHGVDAPEDVEKIESFMRERNL 214
           H   GVD  E++E++ ++++E N+
Sbjct: 220 HSLIGVDTQENLEQVINYIKENNI 243

Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria.

Fusobacterium nucleatum subsp. nucleatum (strain ATCC 25586 / CIP 101130 / JCM 8532 / LMG 13131) (taxid: 190304)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 3

EC: 8

>sp|A6L9D4|KDSB_PARD8 3-deoxy-manno-octulosonate cytidylyltransferase OS=Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152) GN=kdsB PE=3 SV=1

 Score =  158 bits (399), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 86/206 (41%), Positives = 122/206 (59%), Gaps = 9/206 (4%)

Query: 15  VATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPE 74
           VATDD +I    + FG  V+MTS+  R+GT+RC EA QK+ + YD++VNIQGDEP I PE
Sbjct: 47  VATDDIRIENAVKAFGGQVVMTSDQHRSGTDRCYEAYQKIGEGYDVIVNIQGDEPFIHPE 106

Query: 75  IIDGVVKALQAAPDAVFSTAVTSLKPED-----AFDPNRVKCVVDNHGYAIYFSRGLIPY 129
            I   +K   A  +   +T V   + +D      F+PN  K V++ +  A+YFSR +IPY
Sbjct: 107 QIQ-TIKTCFADANTQIATLVKPFRSDDDFESSLFNPNSPKVVLNKNNEAMYFSRSIIPY 165

Query: 130 NKSGKVNPQFP---YLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKV 186
            +  K     P   +  H+G+ +Y +  LK    L  + L+L E LEQL+ LENGYK+KV
Sbjct: 166 IRGKKYTEWLPSHTFYKHIGLYAYRAQVLKEITQLPQSALELAESLEQLRWLENGYKIKV 225

Query: 187 IKVDHEAHGVDAPEDVEKIESFMRER 212
              + E  G+D PED+EK  +F+  R
Sbjct: 226 GITEQETIGIDTPEDMEKALAFLANR 251

Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria.

Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152) (taxid: 435591)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 3

EC: 8

>sp|C5CKW0|KDSB_VARPS 3-deoxy-manno-octulosonate cytidylyltransferase OS=Variovorax paradoxus (strain S110) GN=kdsB PE=3 SV=1

 Score =  156 bits (395), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 85/206 (41%), Positives = 123/206 (59%), Gaps = 12/206 (5%)

Query: 13  LVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLE-KKYDIVVNIQGDEPLI 71
           +VVA DD  I E C + G + I+T +   +G++R  EA ++L     DI+VN+QGDEPLI
Sbjct: 45  VVVAGDDAAIVEACARHGVEAILTRQDHPSGSDRLAEACEQLGLDGSDIIVNVQGDEPLI 104

Query: 72  EPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAF-DPNRVKCVVDNHGYAIYFSRGLIPYN 130
           +P +ID V  AL A P+A  STA   +   D F +PN VK V+D  G A+YFSR  IP+ 
Sbjct: 105 DPALIDAVASALAAHPEAAMSTAAHEIDSLDDFLNPNVVKAVLDAQGNALYFSRAPIPWW 164

Query: 131 KSGKVNPQFPYLL-------HLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYK 183
           + G  N   P +L       H+GI  Y + F++ +P L P P++  E LEQL+ L +G++
Sbjct: 165 RDGSANGAPPSVLPAPAPLRHIGIYGYRAGFVRSFPSLAPAPVEATEALEQLRALWHGHR 224

Query: 184 MKVIKVDHEA--HGVDAPEDVEKIES 207
           + V  V H A   GVD P D+E++ +
Sbjct: 225 IAV-HVSHVAPGPGVDTPADLERVRA 249

Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria.

Variovorax paradoxus (strain S110) (taxid: 543728)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 3

EC: 8

>sp|Q9PKL1|KDSB_CHLMU 3-deoxy-manno-octulosonate cytidylyltransferase OS=Chlamydia muridarum (strain MoPn / Nigg) GN=kdsB PE=3 SV=2

 Score =  155 bits (392), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 88/200 (44%), Positives = 123/200 (61%), Gaps = 8/200 (4%)

Query: 13  LVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIE 72
           +VVATDD++I +   +FG   +MT ESC NGTER  EA+ +   + +IVVNIQGDEP + 
Sbjct: 52  VVVATDDQRIFDHVVEFGGLCVMTCESCANGTERVEEAVSQHFPQAEIVVNIQGDEPCLS 111

Query: 73  PEIIDGVVKALQAAPDAVFSTAVT-SLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNK 131
           P IIDG+V+ L+  P    +T VT ++ P+     ++VKCV D  G A+YFSR +IP N 
Sbjct: 112 PSIIDGLVEMLEGNPAIDIATPVTETVDPDAILTNHKVKCVFDKTGRALYFSRSVIPNNF 171

Query: 132 SGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDH 191
                   P  LH+G+ ++   FL  Y  + P+ L L EDLEQL+VLE+G  + V  V  
Sbjct: 172 KRST----PIYLHIGVYAFRRAFLSEYVKIPPSSLSLAEDLEQLRVLESGRSIYV-HVVQ 226

Query: 192 EAHG--VDAPEDVEKIESFM 209
            A G  VD PED+ K+E ++
Sbjct: 227 NATGPSVDYPEDISKVEQYL 246

Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria.

Chlamydia muridarum (strain MoPn / Nigg) (taxid: 243161)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 3

EC: 8

>sp|B0BBG2|KDSB_CHLTB 3-deoxy-manno-octulosonate cytidylyltransferase OS=Chlamydia trachomatis serovar L2b (strain UCH-1/proctitis) GN=kdsB PE=3 SV=1

 Score =  155 bits (391), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 88/200 (44%), Positives = 120/200 (60%), Gaps = 8/200 (4%)

Query: 13  LVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIE 72
           +VVATDD++I +   +FG   +MTS SC NGTER  E + +   + +IVVNIQGDEP + 
Sbjct: 52  VVVATDDQRIFDHVVEFGGLCVMTSTSCANGTERVEEVVSRHFPQAEIVVNIQGDEPCLS 111

Query: 73  PEIIDGVVKALQAAPDAVFSTAVT-SLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNK 131
           P +IDG+V  L+  P A   T VT +  PE     ++VKCV D +G A+YFSR  IP+N 
Sbjct: 112 PTVIDGLVSTLENNPAADMVTPVTETTDPEAILTDHKVKCVFDKNGKALYFSRSAIPHNF 171

Query: 132 SGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDH 191
                   P  LH+G+ ++   FL  Y  + P+ L L EDLEQL+VLE G  + V  V  
Sbjct: 172 KHPT----PIYLHIGVYAFRKAFLSEYVKIPPSSLSLAEDLEQLRVLETGRSIYV-HVVQ 226

Query: 192 EAHG--VDAPEDVEKIESFM 209
            A G  VD PED+ K+E ++
Sbjct: 227 NATGPSVDYPEDITKVEQYL 246

Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria.

Chlamydia trachomatis serovar L2b (strain UCH-1/proctitis) (taxid: 471473)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 3

EC: 8

>sp|B0B9T2|KDSB_CHLT2 3-deoxy-manno-octulosonate cytidylyltransferase OS=Chlamydia trachomatis serovar L2 (strain 434/Bu / ATCC VR-902B) GN=kdsB PE=3 SV=1

 Score =  155 bits (391), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 88/200 (44%), Positives = 120/200 (60%), Gaps = 8/200 (4%)

Query: 13  LVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIE 72
           +VVATDD++I +   +FG   +MTS SC NGTER  E + +   + +IVVNIQGDEP + 
Sbjct: 52  VVVATDDQRIFDHVVEFGGLCVMTSTSCANGTERVEEVVSRHFPQAEIVVNIQGDEPCLS 111

Query: 73  PEIIDGVVKALQAAPDAVFSTAVT-SLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNK 131
           P +IDG+V  L+  P A   T VT +  PE     ++VKCV D +G A+YFSR  IP+N 
Sbjct: 112 PTVIDGLVSTLENNPAADMVTPVTETTDPEAILTDHKVKCVFDKNGKALYFSRSAIPHNF 171

Query: 132 SGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDH 191
                   P  LH+G+ ++   FL  Y  + P+ L L EDLEQL+VLE G  + V  V  
Sbjct: 172 KHPT----PIYLHIGVYAFRKAFLSEYVKIPPSSLSLAEDLEQLRVLETGRSIYV-HVVQ 226

Query: 192 EAHG--VDAPEDVEKIESFM 209
            A G  VD PED+ K+E ++
Sbjct: 227 NATGPSVDYPEDITKVEQYL 246

Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria.

Chlamydia trachomatis serovar L2 (strain 434/Bu / ATCC VR-902B) (taxid: 471472)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 3

EC: 8

>sp|P0CD75|KDSB_CHLTR 3-deoxy-manno-octulosonate cytidylyltransferase OS=Chlamydia trachomatis (strain D/UW-3/Cx) GN=kdsB PE=3 SV=1

 Score =  155 bits (391), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 88/200 (44%), Positives = 121/200 (60%), Gaps = 8/200 (4%)

Query: 13  LVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIE 72
           +VVATDD++I +   +FG   +MTS SC NGTER  E + +   + +IVVNIQGDEP + 
Sbjct: 52  VVVATDDQRIFDHVVEFGGLCVMTSTSCANGTERVEEVVSRHFPQAEIVVNIQGDEPCLS 111

Query: 73  PEIIDGVVKALQAAPDAVFSTAVT-SLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNK 131
           P +IDG+V  L+  P A   T+VT +  PE     ++VKCV D +G A+YFSR  IP+N 
Sbjct: 112 PTVIDGLVSTLENNPAADMVTSVTETTDPEAILTDHKVKCVFDKNGKALYFSRSAIPHNF 171

Query: 132 SGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDH 191
                   P  LH+G+ ++   FL  Y  + P+ L L EDLEQL+VLE G  + V  V  
Sbjct: 172 KHPT----PIYLHIGVYAFRKAFLSEYVKIPPSSLSLAEDLEQLRVLEIGRSIYV-HVVQ 226

Query: 192 EAHG--VDAPEDVEKIESFM 209
            A G  VD PED+ K+E ++
Sbjct: 227 NATGPSVDYPEDITKVEQYL 246

Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria.

Chlamydia trachomatis (strain D/UW-3/Cx) (taxid: 272561)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 3

EC: 8

>sp|Q3KMI0|KDSB_CHLTA 3-deoxy-manno-octulosonate cytidylyltransferase OS=Chlamydia trachomatis serovar A (strain HAR-13 / ATCC VR-571B) GN=kdsB PE=3 SV=1

 Score =  155 bits (391), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 88/200 (44%), Positives = 121/200 (60%), Gaps = 8/200 (4%)

Query: 13  LVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIE 72
           +VVATDD++I +   +FG   +MTS SC NGTER  E + +   + +IVVNIQGDEP + 
Sbjct: 52  VVVATDDQRIFDHVVEFGGLCVMTSTSCANGTERVEEVVSRHFPQAEIVVNIQGDEPCLS 111

Query: 73  PEIIDGVVKALQAAPDAVFSTAVT-SLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNK 131
           P +IDG+V  L+  P A   T+VT +  PE     ++VKCV D +G A+YFSR  IP+N 
Sbjct: 112 PTVIDGLVSTLENNPAADMVTSVTETTDPEAILTDHKVKCVFDKNGKALYFSRSAIPHNF 171

Query: 132 SGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDH 191
                   P  LH+G+ ++   FL  Y  + P+ L L EDLEQL+VLE G  + V  V  
Sbjct: 172 KHPT----PIYLHIGVYAFRKAFLSEYVKIPPSSLSLAEDLEQLRVLEIGRSIYV-HVVQ 226

Query: 192 EAHG--VDAPEDVEKIESFM 209
            A G  VD PED+ K+E ++
Sbjct: 227 NATGPSVDYPEDITKVEQYL 246

Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria.

Chlamydia trachomatis serovar A (strain HAR-13 / ATCC VR-571B) (taxid: 315277)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 3

EC: 8

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	215
224114948	293	predicted protein [Populus trichocarpa]	0.944	0.692	0.916	1e-107
255552475	294	cmp-2-keto-3-deoctulosonate (cmp-kdo) cy	0.939	0.687	0.905	1e-105
225461429	297	PREDICTED: 3-deoxy-manno-octulosonate cy	0.944	0.683	0.906	1e-105
356543296	306	PREDICTED: 3-deoxy-manno-octulosonate cy	0.944	0.663	0.916	1e-105
356514754	305	PREDICTED: 3-deoxy-manno-octulosonate cy	0.944	0.665	0.916	1e-104
147789206	297	hypothetical protein VITISV_036570 [Viti	0.944	0.683	0.901	1e-104
225468421	293	PREDICTED: 3-deoxy-manno-octulosonate cy	0.944	0.692	0.891	1e-103
224128153	288	predicted protein [Populus trichocarpa]	0.944	0.704	0.886	1e-103
30695393	290	3-deoxy-manno-octulosonate cytidylyltran	0.944	0.7	0.881	1e-103
255587342	290	cmp-2-keto-3-deoctulosonate (cmp-kdo) cy	0.939	0.696	0.886	1e-103

>gi|224114948|ref|XP_002316900.1| predicted protein [Populus trichocarpa] gi|222859965|gb|EEE97512.1| predicted protein [Populus trichocarpa]

 Score =  392 bits (1006), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 186/203 (91%), Positives = 196/203 (96%)

Query: 13  LVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIE 72
           +VVATDDEKIAECC+ FGADV+MTSESCRNGTERCNEALQKL+KKYD+VVNIQGDEPLIE
Sbjct: 91  IVVATDDEKIAECCRGFGADVVMTSESCRNGTERCNEALQKLDKKYDVVVNIQGDEPLIE 150

Query: 73  PEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKS 132
           PEIIDG+VK+LQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDN GYAIYFSRGLIPYNKS
Sbjct: 151 PEIIDGIVKSLQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNQGYAIYFSRGLIPYNKS 210

Query: 133 GKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHE 192
           GKVNPQFPYLLHLGIQSYD+ FLKIYP L PTPLQLEEDLEQLKVLENGYKMKVIKVDHE
Sbjct: 211 GKVNPQFPYLLHLGIQSYDAKFLKIYPELQPTPLQLEEDLEQLKVLENGYKMKVIKVDHE 270

Query: 193 AHGVDAPEDVEKIESFMRERNLS 215
           AHGVD PEDVEKIE+ MRE+NLS
Sbjct: 271 AHGVDIPEDVEKIETLMREQNLS 293

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255552475|ref|XP_002517281.1| cmp-2-keto-3-deoctulosonate (cmp-kdo) cytidyltransferase, putative [Ricinus communis] gi|223543544|gb|EEF45074.1| cmp-2-keto-3-deoctulosonate (cmp-kdo) cytidyltransferase, putative [Ricinus communis]

 Score =  387 bits (993), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 183/202 (90%), Positives = 192/202 (95%)

Query: 13  LVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIE 72
           ++VATDDEKIAECC+ FGADVIMTSESCRNGTERCNEA+ KLEKKYD+VVNIQGDEPLIE
Sbjct: 92  IIVATDDEKIAECCRGFGADVIMTSESCRNGTERCNEAIGKLEKKYDVVVNIQGDEPLIE 151

Query: 73  PEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKS 132
           PEIIDG+VKALQ APDAVFSTAVTSLKPEDAFDPNRVKCVVDN GYAIYFSRGLIPYNKS
Sbjct: 152 PEIIDGIVKALQEAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNQGYAIYFSRGLIPYNKS 211

Query: 133 GKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHE 192
           GK+NPQFPYLLHLGIQSYD+ FLKIYP L PTPLQLEEDLEQLKVLENGYKMKVIKVDHE
Sbjct: 212 GKINPQFPYLLHLGIQSYDAKFLKIYPELQPTPLQLEEDLEQLKVLENGYKMKVIKVDHE 271

Query: 193 AHGVDAPEDVEKIESFMRERNL 214
           AHGVDAPEDVEKIE  MRE N+
Sbjct: 272 AHGVDAPEDVEKIERLMREHNV 293

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225461429|ref|XP_002284913.1| PREDICTED: 3-deoxy-manno-octulosonate cytidylyltransferase [Vitis vinifera] gi|302143017|emb|CBI20312.3| unnamed protein product [Vitis vinifera]

 Score =  386 bits (991), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 184/203 (90%), Positives = 195/203 (96%)

Query: 13  LVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIE 72
           +VVATDD+KIA+CC+ FGADVIMTSESCRNGTERCNEALQKLEK+YDIVVNIQGDEPLIE
Sbjct: 95  VVVATDDDKIADCCRGFGADVIMTSESCRNGTERCNEALQKLEKQYDIVVNIQGDEPLIE 154

Query: 73  PEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKS 132
           PEIIDGVVKALQAAPDAVFSTAVTSLKPED FDPNRVKC+VDN GYAIYFSRGLIP+NKS
Sbjct: 155 PEIIDGVVKALQAAPDAVFSTAVTSLKPEDGFDPNRVKCIVDNRGYAIYFSRGLIPFNKS 214

Query: 133 GKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHE 192
           G+VN QFPYLLHLGIQSYD+ FL+IYP L PTPLQLEEDLEQLKVLENGYKMKVIKVDHE
Sbjct: 215 GEVNQQFPYLLHLGIQSYDTKFLRIYPDLPPTPLQLEEDLEQLKVLENGYKMKVIKVDHE 274

Query: 193 AHGVDAPEDVEKIESFMRERNLS 215
           AHGVD PEDV+KIESFMRERNLS
Sbjct: 275 AHGVDTPEDVDKIESFMRERNLS 297

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356543296|ref|XP_003540098.1| PREDICTED: 3-deoxy-manno-octulosonate cytidylyltransferase-like [Glycine max]

 Score =  385 bits (988), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 186/203 (91%), Positives = 191/203 (94%)

Query: 13  LVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIE 72
           +VVATDDEKIA+CC+QFGADVIMTSESCRNGTERCNEALQKL KKYDIVVNIQGDEPLIE
Sbjct: 104 IVVATDDEKIADCCRQFGADVIMTSESCRNGTERCNEALQKLGKKYDIVVNIQGDEPLIE 163

Query: 73  PEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKS 132
           PEIIDGVVKALQAAPDAVFSTAVTSLKPEDA DPNRVKCVVDN GYAIYFSRGLIP+NKS
Sbjct: 164 PEIIDGVVKALQAAPDAVFSTAVTSLKPEDAHDPNRVKCVVDNRGYAIYFSRGLIPFNKS 223

Query: 133 GKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHE 192
           G VN QFPYLLHLGIQSYD+ FL IYP L PTPLQLEEDLEQLKVLENGYKMKVIKVDHE
Sbjct: 224 GMVNQQFPYLLHLGIQSYDAKFLNIYPDLQPTPLQLEEDLEQLKVLENGYKMKVIKVDHE 283

Query: 193 AHGVDAPEDVEKIESFMRERNLS 215
           AHGVD PEDV KIES MRERNLS
Sbjct: 284 AHGVDTPEDVGKIESLMRERNLS 306

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356514754|ref|XP_003526068.1| PREDICTED: 3-deoxy-manno-octulosonate cytidylyltransferase-like [Glycine max]

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 186/203 (91%), Positives = 191/203 (94%)

Query: 13  LVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIE 72
           +VVATDDEKIA+CC+QFGADVIMTSESCRNGTERCNEALQKL KKYDIVVNIQGDEPLIE
Sbjct: 103 VVVATDDEKIADCCRQFGADVIMTSESCRNGTERCNEALQKLGKKYDIVVNIQGDEPLIE 162

Query: 73  PEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKS 132
           PEIIDGVVKALQAAPDAVFSTAVTSLKPEDA DPNRVKCVVDN GYAIYFSRGLIP+NKS
Sbjct: 163 PEIIDGVVKALQAAPDAVFSTAVTSLKPEDAHDPNRVKCVVDNRGYAIYFSRGLIPFNKS 222

Query: 133 GKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHE 192
           GKVN QFPYLLHLGIQSYD+ FL IYP L PTPLQLEEDLEQLKVLENGYKMKVIKV HE
Sbjct: 223 GKVNQQFPYLLHLGIQSYDAKFLNIYPNLRPTPLQLEEDLEQLKVLENGYKMKVIKVHHE 282

Query: 193 AHGVDAPEDVEKIESFMRERNLS 215
           AHGVD PEDV KIES MRERNLS
Sbjct: 283 AHGVDTPEDVGKIESLMRERNLS 305

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147789206|emb|CAN62581.1| hypothetical protein VITISV_036570 [Vitis vinifera]

 Score =  382 bits (980), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 183/203 (90%), Positives = 194/203 (95%)

Query: 13  LVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIE 72
           +VVATDD+KIA+CC+ FGADVIMTSESCRNGTERCNEALQKLEK+YDIVVNIQGDEPLIE
Sbjct: 95  VVVATDDDKIADCCRGFGADVIMTSESCRNGTERCNEALQKLEKQYDIVVNIQGDEPLIE 154

Query: 73  PEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKS 132
           PEIIDGVVKALQAAPDAVFSTAVTSLKPED FDPNRVKC+VDN GYAIYFSRGLIP+NKS
Sbjct: 155 PEIIDGVVKALQAAPDAVFSTAVTSLKPEDGFDPNRVKCIVDNRGYAIYFSRGLIPFNKS 214

Query: 133 GKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHE 192
           G+VN  FPYLLHLGIQSYD+ FL+IYP L PTPLQLEEDLEQLKVLENGYKMKVIKVDHE
Sbjct: 215 GEVNQXFPYLLHLGIQSYDTKFLRIYPDLPPTPLQLEEDLEQLKVLENGYKMKVIKVDHE 274

Query: 193 AHGVDAPEDVEKIESFMRERNLS 215
           AHGVD PEDV+KIESFMRERNLS
Sbjct: 275 AHGVDTPEDVDKIESFMRERNLS 297

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225468421|ref|XP_002263680.1| PREDICTED: 3-deoxy-manno-octulosonate cytidylyltransferase [Vitis vinifera] gi|297735989|emb|CBI23963.3| unnamed protein product [Vitis vinifera]

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 181/203 (89%), Positives = 190/203 (93%)

Query: 13  LVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIE 72
           LVVATDDEKIAECC+ FGADVIMTSESCRNGTERCNEAL+KL K +DIVVNIQGDEPLIE
Sbjct: 91  LVVATDDEKIAECCRGFGADVIMTSESCRNGTERCNEALKKLRKNFDIVVNIQGDEPLIE 150

Query: 73  PEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKS 132
           PEIIDGVVKALQAAPDAVFSTAVTSLKPEDA DPNRVKC+VDN GYAIYFSRGLIPYNKS
Sbjct: 151 PEIIDGVVKALQAAPDAVFSTAVTSLKPEDASDPNRVKCIVDNRGYAIYFSRGLIPYNKS 210

Query: 133 GKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHE 192
           GKVNP FPY LHLGIQSYD+ FL+IYP L PTPLQLEEDLEQLKVLENGYKMKVIKVDH+
Sbjct: 211 GKVNPHFPYFLHLGIQSYDAQFLRIYPELSPTPLQLEEDLEQLKVLENGYKMKVIKVDHD 270

Query: 193 AHGVDAPEDVEKIESFMRERNLS 215
           AHGVD PEDVEKIE+ MR +NLS
Sbjct: 271 AHGVDTPEDVEKIEALMRAQNLS 293

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224128153|ref|XP_002329094.1| predicted protein [Populus trichocarpa] gi|222869763|gb|EEF06894.1| predicted protein [Populus trichocarpa]

 Score =  380 bits (976), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 180/203 (88%), Positives = 193/203 (95%)

Query: 13  LVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIE 72
           +VVATDDEKIAECC+ FGADVIMTSESCRNGTERCNEALQKL+KKYD+VVNIQGDEPLIE
Sbjct: 86  IVVATDDEKIAECCRGFGADVIMTSESCRNGTERCNEALQKLDKKYDVVVNIQGDEPLIE 145

Query: 73  PEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKS 132
           PEIID +VKALQAAPDAVFSTAVT+LKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNK+
Sbjct: 146 PEIIDRIVKALQAAPDAVFSTAVTALKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKT 205

Query: 133 GKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHE 192
           GKVN QFPY+LHLGIQSYD+ FLKIYP L  TPLQLEEDLEQLKVLENGYKMKVIKVDHE
Sbjct: 206 GKVNTQFPYMLHLGIQSYDTKFLKIYPELRSTPLQLEEDLEQLKVLENGYKMKVIKVDHE 265

Query: 193 AHGVDAPEDVEKIESFMRERNLS 215
           AHGVD PEDVEK+E+ MRE++ S
Sbjct: 266 AHGVDIPEDVEKLETLMREQSFS 288

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30695393|ref|NP_175708.2| 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [Arabidopsis thaliana] gi|12324630|gb|AAG52266.1|AC019018_3 putative deoxyoctulonosic acid synthetase; 116195-114393 [Arabidopsis thaliana] gi|22213935|emb|CAD43603.1| putative CMP-KDO synthetase [Arabidopsis thaliana] gi|222424524|dbj|BAH20217.1| AT1G53000 [Arabidopsis thaliana] gi|332194754|gb|AEE32875.1| 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [Arabidopsis thaliana]

 Score =  379 bits (972), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 179/203 (88%), Positives = 189/203 (93%)

Query: 13  LVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIE 72
           +VVATDDE+IAECC+ FGADVIMTSESCRNGTERCNEAL+KLEKKYD+VVNIQGDEPLIE
Sbjct: 88  IVVATDDERIAECCRGFGADVIMTSESCRNGTERCNEALEKLEKKYDVVVNIQGDEPLIE 147

Query: 73  PEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKS 132
           PEIIDGVVKALQ  PDAVFSTAVTSLKPED  DPNRVKCVVDN GYAIYFSRGLIPYNKS
Sbjct: 148 PEIIDGVVKALQVTPDAVFSTAVTSLKPEDGLDPNRVKCVVDNRGYAIYFSRGLIPYNKS 207

Query: 133 GKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHE 192
           GKVNP FPY+LHLGIQS+DS FLK+Y  L PTPLQ EEDLEQLKVLENGYKMKVIKVDHE
Sbjct: 208 GKVNPDFPYMLHLGIQSFDSKFLKVYSELQPTPLQQEEDLEQLKVLENGYKMKVIKVDHE 267

Query: 193 AHGVDAPEDVEKIESFMRERNLS 215
           AHGVD P+DVEKIES MRERN+S
Sbjct: 268 AHGVDTPDDVEKIESLMRERNMS 290

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255587342|ref|XP_002534236.1| cmp-2-keto-3-deoctulosonate (cmp-kdo) cytidyltransferase, putative [Ricinus communis] gi|223525656|gb|EEF28143.1| cmp-2-keto-3-deoctulosonate (cmp-kdo) cytidyltransferase, putative [Ricinus communis]

 Score =  378 bits (971), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 179/202 (88%), Positives = 190/202 (94%)

Query: 13  LVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIE 72
           ++VATD+EKIAECC+ FGADVIMTSESCRNGTERCNEAL KLEKKYD+VVNIQGDEPLIE
Sbjct: 88  IIVATDNEKIAECCRGFGADVIMTSESCRNGTERCNEALGKLEKKYDVVVNIQGDEPLIE 147

Query: 73  PEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKS 132
           P IIDG+VKALQAAP+AVFSTAVTSLKPEDAFDPNRVKCVVDN GYAIYFSRGL+PYNKS
Sbjct: 148 PVIIDGIVKALQAAPNAVFSTAVTSLKPEDAFDPNRVKCVVDNQGYAIYFSRGLVPYNKS 207

Query: 133 GKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHE 192
           GKVN QFPYLLHLGIQSYD+ FLKIY  L PTPLQLEEDLEQLKVLENGYKMKVIKVDHE
Sbjct: 208 GKVNAQFPYLLHLGIQSYDAKFLKIYSELQPTPLQLEEDLEQLKVLENGYKMKVIKVDHE 267

Query: 193 AHGVDAPEDVEKIESFMRERNL 214
           AHGVD PED+EKIE  MRERN+
Sbjct: 268 AHGVDTPEDIEKIERLMRERNV 289

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	215
TAIR|locus:2037015	290	CKS "CMP-KDO synthetase" [Arab	0.944	0.7	0.881	9.7e-96
UNIPROTKB|Q9KQX2	252	kdsB "3-deoxy-manno-octulosona	0.925	0.789	0.410	1.2e-33
TIGR_CMR|VC_1875	252	VC_1875 "3-deoxy-manno-octulos	0.925	0.789	0.410	1.2e-33
TIGR_CMR|GSU_1896	250	GSU_1896 "3-deoxy-D-manno-octu	0.888	0.764	0.405	2.3e-32
UNIPROTKB|P04951	248	kdsB "3-deoxy-D-manno-octuloso	0.920	0.798	0.392	8.8e-31
TIGR_CMR|SO_2478	245	SO_2478 "3-deoxy-D-manno-octul	0.883	0.775	0.388	8.8e-31
TIGR_CMR|CJE_0904	239	CJE_0904 "3-deoxy-D-manno-octu	0.869	0.782	0.367	1.3e-29
TIGR_CMR|CPS_2128	280	CPS_2128 "3-deoxy-D-manno-octu	0.911	0.7	0.372	1.9e-28
TIGR_CMR|SPO_0038	266	SPO_0038 "3-deoxy-D-manno-octu	0.930	0.751	0.373	3.2e-26
TIGR_CMR|CBU_0479	249	CBU_0479 "3-deoxy-D-manno-octu	0.911	0.787	0.343	3.6e-25

TAIR|locus:2037015 CKS "CMP-KDO synthetase" [Arabidopsis thaliana (taxid:3702)]

 Score = 952 (340.2 bits), Expect = 9.7e-96, P = 9.7e-96
 Identities = 179/203 (88%), Positives = 189/203 (93%)

Query:    13 LVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIE 72
             +VVATDDE+IAECC+ FGADVIMTSESCRNGTERCNEAL+KLEKKYD+VVNIQGDEPLIE
Sbjct:    88 IVVATDDERIAECCRGFGADVIMTSESCRNGTERCNEALEKLEKKYDVVVNIQGDEPLIE 147

Query:    73 PEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKS 132
             PEIIDGVVKALQ  PDAVFSTAVTSLKPED  DPNRVKCVVDN GYAIYFSRGLIPYNKS
Sbjct:   148 PEIIDGVVKALQVTPDAVFSTAVTSLKPEDGLDPNRVKCVVDNRGYAIYFSRGLIPYNKS 207

Query:   133 GKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHE 192
             GKVNP FPY+LHLGIQS+DS FLK+Y  L PTPLQ EEDLEQLKVLENGYKMKVIKVDHE
Sbjct:   208 GKVNPDFPYMLHLGIQSFDSKFLKVYSELQPTPLQQEEDLEQLKVLENGYKMKVIKVDHE 267

Query:   193 AHGVDAPEDVEKIESFMRERNLS 215
             AHGVD P+DVEKIES MRERN+S
Sbjct:   268 AHGVDTPDDVEKIESLMRERNMS 290

GO:0008690 "3-deoxy-manno-octulosonate cytidylyltransferase activity" evidence=IEA;IDA

GO:0009103 "lipopolysaccharide biosynthetic process" evidence=IEA;ISS

GO:0016779 "nucleotidyltransferase activity" evidence=ISS

GO:0005739 "mitochondrion" evidence=IDA

GO:0009555 "pollen development" evidence=IMP

GO:0009860 "pollen tube growth" evidence=IMP

GO:0033468 "CMP-keto-3-deoxy-D-manno-octulosonic acid biosynthetic process" evidence=IDA

GO:0031307 "integral to mitochondrial outer membrane" evidence=IDA

GO:0019243 "methylglyoxal catabolic process to D-lactate" evidence=RCA

UNIPROTKB|Q9KQX2 kdsB "3-deoxy-manno-octulosonate cytidylyltransferase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]

 Score = 366 (133.9 bits), Expect = 1.2e-33, P = 1.2e-33
 Identities = 85/207 (41%), Positives = 123/207 (59%)

Query:    13 LVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLI 71
             +++ATDDE++ +  Q FG  V MTS + ++GTER  E + K+    D IVVN+QGDEPLI
Sbjct:    45 VIIATDDERVEQAVQAFGGVVCMTSPNHQSGTERLAEVVAKMAIPADHIVVNVQGDEPLI 104

Query:    72 EPEIIDGVVKALQAAPDAVFSTAVTSLKPE-DAFDPNRVKCVVDNHGYAIYFSRGLIPYN 130
              P II  V   L AA  A  +T    ++ E + F+PN VK + D  GYA+YFSR  IP++
Sbjct:   105 PPAIIRQVADNL-AACSAPMATLAVEIEDEAEVFNPNAVKVITDKSGYALYFSRATIPWD 163

Query:   131 KSG--KVNPQF--PYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKV 186
             +    K +     P L H+GI +Y + F+  Y    P+ L+  E LEQL+VL +G K+ V
Sbjct:   164 RDNFAKADKAIVQPLLRHIGIYAYRAGFINTYLDWQPSQLEKIECLEQLRVLWHGEKIHV 223

Query:   187 -IKVDHEAHGVDAPEDVEKIESFMRER 212
              + ++    GVD PED+E +   + ER
Sbjct:   224 AVALEAPPAGVDTPEDLEVVRRIVAER 250

GO:0008690 "3-deoxy-manno-octulosonate cytidylyltransferase activity" evidence=ISS

GO:0009244 "lipopolysaccharide core region biosynthetic process" evidence=ISS

TIGR_CMR|VC_1875 VC_1875 "3-deoxy-manno-octulosonate cytidylyltransferase" [Vibrio cholerae O1 biovar El Tor (taxid:686)]

 Score = 366 (133.9 bits), Expect = 1.2e-33, P = 1.2e-33
 Identities = 85/207 (41%), Positives = 123/207 (59%)

Query:    13 LVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLI 71
             +++ATDDE++ +  Q FG  V MTS + ++GTER  E + K+    D IVVN+QGDEPLI
Sbjct:    45 VIIATDDERVEQAVQAFGGVVCMTSPNHQSGTERLAEVVAKMAIPADHIVVNVQGDEPLI 104

Query:    72 EPEIIDGVVKALQAAPDAVFSTAVTSLKPE-DAFDPNRVKCVVDNHGYAIYFSRGLIPYN 130
              P II  V   L AA  A  +T    ++ E + F+PN VK + D  GYA+YFSR  IP++
Sbjct:   105 PPAIIRQVADNL-AACSAPMATLAVEIEDEAEVFNPNAVKVITDKSGYALYFSRATIPWD 163

Query:   131 KSG--KVNPQF--PYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKV 186
             +    K +     P L H+GI +Y + F+  Y    P+ L+  E LEQL+VL +G K+ V
Sbjct:   164 RDNFAKADKAIVQPLLRHIGIYAYRAGFINTYLDWQPSQLEKIECLEQLRVLWHGEKIHV 223

Query:   187 -IKVDHEAHGVDAPEDVEKIESFMRER 212
              + ++    GVD PED+E +   + ER
Sbjct:   224 AVALEAPPAGVDTPEDLEVVRRIVAER 250

GO:0008690 "3-deoxy-manno-octulosonate cytidylyltransferase activity" evidence=ISS

GO:0009244 "lipopolysaccharide core region biosynthetic process" evidence=ISS

TIGR_CMR|GSU_1896 GSU_1896 "3-deoxy-D-manno-octulosonate cytidylyltransferase" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 354 (129.7 bits), Expect = 2.3e-32, P = 2.3e-32
 Identities = 82/202 (40%), Positives = 119/202 (58%)

Query:    13 LVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIE 72
             +VVATDD++IA+  + FG  V MTS     GT+R  E   ++    +I+VN+QGDEPLIE
Sbjct:    46 VVVATDDDRIAQAVRGFGGRVEMTSRDHETGTDRLAEVASRIGA--EIIVNVQGDEPLIE 103

Query:    73 PEIIDGVVKALQAAPDAVFSTAVTSLKP-EDAFDPNRVKCVVDNHGYAIYFSRGLIPY-- 129
             P +ID  +  L   P     T  + ++   D   PN VK V D  GYA+YFSR  +P+  
Sbjct:   104 PAMIDEAIAPLAENPAVRMGTLKSRIRTLHDFLSPNVVKVVTDLEGYALYFSRSPLPFFR 163

Query:   130 NKSGKVNPQ-FPY--LL---HLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYK 183
             +K   +  + F    LL   H+G+  Y  +FL  +  + PT L+L E LEQL+ LENG +
Sbjct:   164 DKWNDLKDESFASGRLLCYKHVGLYVYRRDFLMEFAKMPPTALELAEKLEQLRALENGCR 223

Query:   184 MKVIKVDHEAHGVDAPEDVEKI 205
             ++V++  HE+ GVD P D+EK+
Sbjct:   224 IRVVETAHESIGVDTPNDLEKV 245

GO:0008690 "3-deoxy-manno-octulosonate cytidylyltransferase activity" evidence=ISS

GO:0009244 "lipopolysaccharide core region biosynthetic process" evidence=ISS

UNIPROTKB|P04951 kdsB "3-deoxy-D-manno-octulosonate cytidylyltransferase" [Escherichia coli K-12 (taxid:83333)]

 Score = 339 (124.4 bits), Expect = 8.8e-31, P = 8.8e-31
 Identities = 80/204 (39%), Positives = 116/204 (56%)

Query:    13 LVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLI 71
             ++VATD E +A   +  G +V MT    ++GTER  E ++K     D ++VN+QGDEP+I
Sbjct:    45 IIVATDHEDVARAVEAAGGEVCMTRADHQSGTERLAEVVEKCAFSDDTVIVNVQGDEPMI 104

Query:    72 EPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNK 131
                II  V   L      + + AV     E+AF+PN VK V+D  GYA+YFSR  IP+++
Sbjct:   105 PATIIRQVADNLAQRQVGMATLAVPIHNAEEAFNPNAVKVVLDAEGYALYFSRATIPWDR 164

Query:   132 S----GKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKV- 186
                  G       +L HLGI  Y + F++ Y    P+PL+  E LEQL+VL  G K+ V 
Sbjct:   165 DRFAEGLETVGDNFLRHLGIYGYRAGFIRRYVNWQPSPLEHIEMLEQLRVLWYGEKIHVA 224

Query:   187 IKVDHEAHGVDAPEDVEKIESFMR 210
             +  +    GVD PED+E++ + MR
Sbjct:   225 VAQEVPGTGVDTPEDLERVRAEMR 248

GO:0033468 "CMP-keto-3-deoxy-D-manno-octulosonic acid biosynthetic process" evidence=IEA

GO:0019294 "keto-3-deoxy-D-manno-octulosonic acid biosynthetic process" evidence=IDA

GO:0000287 "magnesium ion binding" evidence=IDA

GO:0008690 "3-deoxy-manno-octulosonate cytidylyltransferase activity" evidence=IEA;IDA

GO:0005737 "cytoplasm" evidence=IEA

TIGR_CMR|SO_2478 SO_2478 "3-deoxy-D-manno-octulosonate cytidylyltransferase" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 339 (124.4 bits), Expect = 8.8e-31, P = 8.8e-31
 Identities = 77/198 (38%), Positives = 112/198 (56%)

Query:    13 LVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLE-KKYDIVVNIQGDEPLI 71
             + VATDDE+I    + FG  V+MTS    +GT+R N+A+ +L  K  D+V+N+QGD+PLI
Sbjct:    46 IYVATDDERIKSAVEGFGGKVVMTSPDAASGTDRINDAINQLGLKDDDLVINLQGDQPLI 105

Query:    72 EPEIIDGVVKALQAAPDAVFSTAVTS---LKPEDAFDPNRVKCVVDNHGYAIYFSRGLIP 128
             +P  I+ V+   +  P   F  A      +   +  DP  VK V DN  YA+YFSR  IP
Sbjct:   106 DPTSIEQVISLFERHPGE-FEMATLGYEIVNKAELDDPMHVKMVFDNDYYALYFSRARIP 164

Query:   129 YNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIK 188
             + +  K    +P   HLG+ +Y   F++ +  L    L+  E LEQL+ LE G+K+KV  
Sbjct:   165 FGRDTK---DYPVYKHLGVYAYTRRFVQAFAALPLGRLEDLEKLEQLRALEYGHKIKVAI 221

Query:   189 VDHEAHGVDAPEDVEKIE 206
                ++  VD PED+ K E
Sbjct:   222 SAFDSIEVDTPEDIRKCE 239

GO:0008690 "3-deoxy-manno-octulosonate cytidylyltransferase activity" evidence=ISS

GO:0009244 "lipopolysaccharide core region biosynthetic process" evidence=ISS

TIGR_CMR|CJE_0904 CJE_0904 "3-deoxy-D-manno-octulosonate cytidylyltransferase" [Campylobacter jejuni RM1221 (taxid:195099)]

 Score = 328 (120.5 bits), Expect = 1.3e-29, P = 1.3e-29
 Identities = 71/193 (36%), Positives = 113/193 (58%)

Query:    15 VATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLIEP 73
             +A DDEK+    +++G + ++TS++  +GT+R NEA +KL  K D I++N+Q DEP IE 
Sbjct:    42 IALDDEKVLSIAKEYGLNAVLTSKNHESGTDRINEACKKLSLKDDEIIINVQADEPFIEC 101

Query:    74 EIIDGVVKALQAAPD--AVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNK 131
             E +    +   +  D  A  ++    +  E+A D N VK + D  GYA+YFSR  IPY +
Sbjct:   102 ENLLKFKEFASSCLDKKAFMASCYKKITQEEAMDSNLVKVLCDKEGYALYFSRAKIPYER 161

Query:   132 SGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDH 191
                 N +  +  HLGI +Y    L+ +  L  + L+  E LEQL+ +ENG K+K++++  
Sbjct:   162 E---NYEESFKGHLGIYAYSVKALREFCSLLSSALERAEKLEQLRAIENGKKIKMLEIST 218

Query:   192 EAHGVDAPEDVEK 204
              + G+D  ED EK
Sbjct:   219 TSMGIDTKEDYEK 231

GO:0008690 "3-deoxy-manno-octulosonate cytidylyltransferase activity" evidence=ISS

GO:0009244 "lipopolysaccharide core region biosynthetic process" evidence=ISS

TIGR_CMR|CPS_2128 CPS_2128 "3-deoxy-D-manno-octulosonate cytidylyltransferase" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 317 (116.6 bits), Expect = 1.9e-28, P = 1.9e-28
 Identities = 80/215 (37%), Positives = 119/215 (55%)

Query:    13 LVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLI 71
             ++VATD++++A     FGA+V  T    ++GTER  E ++K +   D I+VN+QGDEP I
Sbjct:    61 VIVATDNDEVAAVVNSFGAEVCKTRADHQSGTERLAEVMEKYQFSDDEIIVNVQGDEPFI 120

Query:    72 EPEIIDGVVKAL----QAAPDAVFSTAVTSLKPED-AFDPNRVKCVVDNHGYAIYFSRGL 126
              P+ I  V   L    Q++  A  ST   ++   D AF+PN VK ++D  GYA+YFSR  
Sbjct:   121 PPDNIAQVANNLANQQQSSHVARMSTLAINIDSVDEAFNPNAVKVILDKDGYALYFSRAT 180

Query:   127 IPYNKSGKVNPQFP-----------YLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQL 175
             IPY++   +N               YL H+GI +Y + F+K Y     + L+  E LEQL
Sbjct:   181 IPYDRERFLNSDATTEENIRAIGDFYLRHVGIYAYRAGFIKDYVNWPTSELEQVEALEQL 240

Query:   176 KVLENGYKMKV-IKVDH-EAHGVDAPEDVEKIESF 208
             +VL  G ++ V +   H    GVD PED+ K  ++
Sbjct:   241 RVLYQGERIHVAVANSHVPVEGVDTPEDLAKARAY 275

GO:0008690 "3-deoxy-manno-octulosonate cytidylyltransferase activity" evidence=ISS

GO:0009244 "lipopolysaccharide core region biosynthetic process" evidence=ISS

TIGR_CMR|SPO_0038 SPO_0038 "3-deoxy-D-manno-octulosonate cytidylyltransferase" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 296 (109.3 bits), Expect = 3.2e-26, P = 3.2e-26
 Identities = 81/217 (37%), Positives = 114/217 (52%)

Query:    13 LVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIE 72
             +VVATDD++I    + FGA+V+MTS  C NGTERC EA   L   +DIVVN+QGD PL  
Sbjct:    51 VVVATDDDRIRAVAEGFGAEVVMTSSDCVNGTERCAEAHAVLGGGFDIVVNLQGDAPLTP 110

Query:    73 PEIIDGVVKALQAAPDAVFSTAVTSLKPE--DAFDPNR-------VKCVVDNHGYAIYFS 123
                ++ ++  L+AAP+A  +T V        + F  +R          V      A+YFS
Sbjct:   111 HWFVEDLIAGLRAAPEADIATPVLRCDGMALNGFLNDRKHGRVGGTTAVFAADRSALYFS 170

Query:   124 RGLIPYNKSGKVNPQ-FPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGY 182
             + +IP+      +    P   H+G+ +Y    L  YP     PL+  E LEQL+ +ENG 
Sbjct:   171 KEVIPFTSQIYADDAPTPVFHHVGVYAYRPGALADYPTWPMGPLETLEGLEQLRFMENG- 229

Query:   183 KMKVIKVDHEAHG-----VDAPEDVEKIESFMRERNL 214
               KV+ V+ EA G     ++ PEDV +IE  M    L
Sbjct:   230 -RKVLCVEVEARGRQFWELNNPEDVARIEEMMAAMGL 265

GO:0008690 "3-deoxy-manno-octulosonate cytidylyltransferase activity" evidence=ISS

GO:0009244 "lipopolysaccharide core region biosynthetic process" evidence=ISS

TIGR_CMR|CBU_0479 CBU_0479 "3-deoxy-D-manno-octulosonate cytidylyltransferase" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 286 (105.7 bits), Expect = 3.6e-25, P = 3.6e-25
 Identities = 70/204 (34%), Positives = 116/204 (56%)

Query:    13 LVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLI 71
             +V+ATDD++I +  + FGA V MTS   ++GTER  EA   L  + D I+V +QGDEPLI
Sbjct:    45 VVIATDDKRIRQVAEDFGAVVCMTSSDHQSGTERIAEAAVALGFEDDEIIVCLQGDEPLI 104

Query:    72 EPEIIDGVVKALQAAPDAVFSTAVTSL-KPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYN 130
              P+ I  + + L    +   ++  T + + ++ F+P+  K V++   YA+YFS   IP+ 
Sbjct:   105 PPDAIRKLAEDLDEHDNVKVASLCTPITEVDELFNPHSTKVVLNRRNYALYFSHAPIPWG 164

Query:   131 K---SGKVNPQF--PYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMK 185
             +   S K N Q    +  H+GI +Y   FL+ Y      P +  E LEQL++L +G ++ 
Sbjct:   165 RDTFSDKENLQLNGSHYRHVGIYAYRVGFLEEYLSWDACPAEKMEALEQLRILWHGGRIH 224

Query:   186 VIKVDHEAH-GVDAPEDVEKIESF 208
             ++    +   GVD  ED+E++ ++
Sbjct:   225 MVVAKSKCPPGVDTEEDLERVRAY 248

GO:0008690 "3-deoxy-manno-octulosonate cytidylyltransferase activity" evidence=ISS

GO:0019294 "keto-3-deoxy-D-manno-octulosonic acid biosynthetic process" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8F0C3	KDSB_LEPIN	2, ., 7, ., 7, ., 3, 8	0.4225	0.9581	0.8340	yes	no
B8FKL0	KDSB_DESAA	2, ., 7, ., 7, ., 3, 8	0.3921	0.9302	0.8163	yes	no
Q8RFA8	KDSB_FUSNN	2, ., 7, ., 7, ., 3, 8	0.4264	0.9255	0.8122	yes	no
Q72UN2	KDSB_LEPIC	2, ., 7, ., 7, ., 3, 8	0.4225	0.9581	0.8306	yes	no
Q04VK9	KDSB_LEPBJ	2, ., 7, ., 7, ., 3, 8	0.4131	0.9581	0.8373	yes	no
Q9C920	KDSB_ARATH	2, ., 7, ., 7, ., 3, 8	0.8817	0.9441	0.7	yes	no
C6E0M8	KDSB_GEOSM	2, ., 7, ., 7, ., 3, 8	0.3870	0.9581	0.8174	yes	no
Q04XW6	KDSB_LEPBL	2, ., 7, ., 7, ., 3, 8	0.4131	0.9581	0.8373	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.7.7	0.766
3rd Layer	2.7.7.38	0.824

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	215
PLN02917	293	PLN02917, PLN02917, CMP-KDO synthetase	1e-163
cd02517	239	cd02517, CMP-KDO-Synthetase, CMP-KDO synthetase ca	1e-103
PRK05450	245	PRK05450, PRK05450, 3-deoxy-manno-octulosonate cyt	2e-88
COG1212	247	COG1212, KdsB, CMP-2-keto-3-deoxyoctulosonic acid	3e-78
PRK13368	238	PRK13368, PRK13368, 3-deoxy-manno-octulosonate cyt	1e-68
TIGR00466	238	TIGR00466, kdsB, 3-deoxy-D-manno-octulosonate cyti	2e-51
pfam02348	197	pfam02348, CTP_transf_3, Cytidylyltransferase	2e-39
cd02513	223	cd02513, CMP-NeuAc_Synthase, CMP-NeuAc_Synthase ac	1e-08
cd02518	233	cd02518, GT2_SpsF, SpsF is a glycosyltrnasferase i	2e-06
TIGR03584	222	TIGR03584, PseF, pseudaminic acid CMP-transferase	4e-05
COG1861	241	COG1861, SpsF, Spore coat polysaccharide biosynthe	5e-04

>gnl|CDD|215495 PLN02917, PLN02917, CMP-KDO synthetase

 Score =  452 bits (1164), Expect = e-163
 Identities = 188/203 (92%), Positives = 195/203 (96%)

Query: 13  LVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIE 72
           +VVATDDE+IAECC+ FGADVIMTSESCRNGTERCNEAL+KLEKKYDIVVNIQGDEPLIE
Sbjct: 91  IVVATDDERIAECCRGFGADVIMTSESCRNGTERCNEALKKLEKKYDIVVNIQGDEPLIE 150

Query: 73  PEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKS 132
           PEIIDGVVKALQAAPDAVFSTAVTSLKPEDA DPNRVKCVVDN GYAIYFSRGLIPYNKS
Sbjct: 151 PEIIDGVVKALQAAPDAVFSTAVTSLKPEDASDPNRVKCVVDNQGYAIYFSRGLIPYNKS 210

Query: 133 GKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHE 192
           GKVNPQFPYLLHLGIQSYD+ FLKIYP L PTPLQLEEDLEQLKVLENGYKMKVIKVDHE
Sbjct: 211 GKVNPQFPYLLHLGIQSYDAKFLKIYPELPPTPLQLEEDLEQLKVLENGYKMKVIKVDHE 270

Query: 193 AHGVDAPEDVEKIESFMRERNLS 215
           AHGVD PEDVEKIE+ MRERN+S
Sbjct: 271 AHGVDTPEDVEKIEALMRERNIS 293

Length = 293

>gnl|CDD|133010 cd02517, CMP-KDO-Synthetase, CMP-KDO synthetase catalyzes the activation of KDO which is an essential component of the lipopolysaccharide

 Score =  297 bits (764), Expect = e-103
 Identities = 99/203 (48%), Positives = 135/203 (66%), Gaps = 3/203 (1%)

Query: 7   SFLFCGLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQG 66
           +     +VVATDDE+IA+  + FG  V+MTS    +GT+R  E  +KL+   DIVVN+QG
Sbjct: 39  AKGLDEVVVATDDERIADAVESFGGKVVMTSPDHPSGTDRIAEVAEKLDADDDIVVNVQG 98

Query: 67  DEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLK-PEDAFDPNRVKCVVDNHGYAIYFSRG 125
           DEPLI PE+ID VV AL+  P    +T  T +   E+ F+PN VK V+D  GYA+YFSR 
Sbjct: 99  DEPLIPPEMIDQVVAALKDDPGVDMATLATPISDEEELFNPNVVKVVLDKDGYALYFSRS 158

Query: 126 LIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMK 185
            IPY +    +  FPY  H+GI +Y  +FL  +  L P+PL+  E LEQL+ LENGYK+K
Sbjct: 159 PIPYPR--DSSEDFPYYKHIGIYAYRRDFLLRFAALPPSPLEQIESLEQLRALENGYKIK 216

Query: 186 VIKVDHEAHGVDAPEDVEKIESF 208
           V++ DHE+ GVD PED+E++E+ 
Sbjct: 217 VVETDHESIGVDTPEDLERVEAL 239

CMP-KDO Synthetase: 3-Deoxy-D-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) catalyzes the conversion of CTP and 3-deoxy-D-manno-octulosonate into CMP-3-deoxy-D-manno-octulosonate (CMP-KDO) and pyrophosphate. KDO is an essential component of the lipopolysaccharide found in the outer surface of gram-negative eubacteria. It is also a constituent of the capsular polysaccharides of some gram-negative eubacteria. Its presence in the cell wall polysaccharides of green algae and plant were also discovered. However, they have not been found in yeast and animals. The absence of the enzyme in mammalian cells makes it an attractive target molecule for drug design. Length = 239

>gnl|CDD|235473 PRK05450, PRK05450, 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional

 Score =  260 bits (666), Expect = 2e-88
 Identities = 93/201 (46%), Positives = 128/201 (63%), Gaps = 5/201 (2%)

Query: 14  VVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLE-KKYDIVVNIQGDEPLIE 72
           VVATDDE+IA+  + FG +V+MTS    +GT+R  EA  KL     DIVVN+QGDEPLI 
Sbjct: 46  VVATDDERIADAVEAFGGEVVMTSPDHPSGTDRIAEAAAKLGLADDDIVVNVQGDEPLIP 105

Query: 73  PEIIDGVVKALQAAPDAVFSTAVTSLK-PEDAFDPNRVKCVVDNHGYAIYFSRGLIPYN- 130
           PEIID V + L A P+A  +T    +   E+AF+PN VK V+D  G A+YFSR  IPY  
Sbjct: 106 PEIIDQVAEPL-ANPEADMATLAVPIHDAEEAFNPNVVKVVLDADGRALYFSRAPIPYGR 164

Query: 131 KSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVD 190
            +   +   P   H+GI +Y   FL+ +  L P+PL+  E LEQL+ LENGY++ V+ V+
Sbjct: 165 DAFADSAPTPVYRHIGIYAYRRGFLRRFVSLPPSPLEKIESLEQLRALENGYRIHVVVVE 224

Query: 191 HE-AHGVDAPEDVEKIESFMR 210
              + GVD PED+E++ + + 
Sbjct: 225 EAPSIGVDTPEDLERVRALLA 245

Length = 245

>gnl|CDD|224133 COG1212, KdsB, CMP-2-keto-3-deoxyoctulosonic acid synthetase [Cell envelope biogenesis, outer membrane]

 Score =  234 bits (599), Expect = 3e-78
 Identities = 91/204 (44%), Positives = 130/204 (63%), Gaps = 4/204 (1%)

Query: 13  LVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKL-EKKYDIVVNIQGDEPLI 71
           +VVATDDE+IAE  Q FG + +MTS+  ++GT+R  E ++KL     +I+VN+QGDEP I
Sbjct: 46  VVVATDDERIAEAVQAFGGEAVMTSKDHQSGTDRLAEVVEKLGLPDDEIIVNVQGDEPFI 105

Query: 72  EPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNK 131
           EPE+I  V + L+ +   + + AV     E+AF+PN VK V+D  GYA+YFSR  IPY +
Sbjct: 106 EPEVIRAVAENLENSNADMATLAVKITDEEEAFNPNVVKVVLDKEGYALYFSRAPIPYGR 165

Query: 132 SGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDH 191
                   P+L H+GI +Y + FL+ +  L P+PL+  E LEQL+VLENG K+ V  V  
Sbjct: 166 --DNFGGTPFLRHIGIYAYRAGFLERFVALKPSPLEKIESLEQLRVLENGEKIHVEIVKE 223

Query: 192 -EAHGVDAPEDVEKIESFMRERNL 214
             + GVD PED+E++   +    L
Sbjct: 224 VPSIGVDTPEDLERVRKILSNNLL 247

Length = 247

>gnl|CDD|184007 PRK13368, PRK13368, 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional

 Score =  209 bits (535), Expect = 1e-68
 Identities = 78/197 (39%), Positives = 121/197 (61%), Gaps = 6/197 (3%)

Query: 14  VVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEP 73
            VATDD++I +  + FG  V+MTS+   +GT+R  E + K+E   DI +N+QGDEP+I P
Sbjct: 47  YVATDDQRIEDAVEAFGGKVVMTSDDHLSGTDRLAEVMLKIE--ADIYINVQGDEPMIRP 104

Query: 74  EIIDGVVKALQAAPDAVFSTAVTSLKPEDAF-DPNRVKCVVDNHGYAIYFSRGLIPYNKS 132
             ID +++ +   P    +T    +  E+ F  PN VK VVD +G A+YFSR  IP  + 
Sbjct: 105 RDIDTLIQPMLDDPSINVATLCAPISTEEEFESPNVVKVVVDKNGDALYFSRSPIPSRRD 164

Query: 133 GKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHE 192
           G+      YL H+GI ++  + L+ +  L  TPL+  E LEQL+ LE+G K+++++V   
Sbjct: 165 GESAR---YLKHVGIYAFRRDVLQQFSQLPETPLEQIESLEQLRALEHGEKIRMVEVAAT 221

Query: 193 AHGVDAPEDVEKIESFM 209
           + GVD PED+E++ + M
Sbjct: 222 SIGVDTPEDLERVRAIM 238

Length = 238

>gnl|CDD|129558 TIGR00466, kdsB, 3-deoxy-D-manno-octulosonate cytidylyltransferase

 Score =  166 bits (421), Expect = 2e-51
 Identities = 85/197 (43%), Positives = 115/197 (58%), Gaps = 6/197 (3%)

Query: 13  LVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLI 71
            +VATDDE +A+ CQ+FG +V MTS+   +GTER  E ++KL  K D  +VN+QGDEP I
Sbjct: 42  CIVATDDESVAQTCQKFGIEVCMTSKHHNSGTERLAEVVEKLALKDDERIVNLQGDEPFI 101

Query: 72  EPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNK 131
             EII  V   L      + + AV     E+AF+PN VK V+D+ GYA+YFSR LIP+++
Sbjct: 102 PKEIIRQVADNLATKNVPMAALAVKIHDAEEAFNPNAVKVVLDSQGYALYFSRSLIPFDR 161

Query: 132 SGKVNPQFP----YLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVI 187
                 Q P     L H+GI  Y + F++ Y    P  L+  E LEQL+VL  G K+ V 
Sbjct: 162 DFFAKRQTPVGDNLLRHIGIYGYRAGFIEEYVAWKPCVLEEIEKLEQLRVLYYGEKIHVK 221

Query: 188 KVDHE-AHGVDAPEDVE 203
                 + GVD  ED+E
Sbjct: 222 IAQEVPSVGVDTQEDLE 238

[Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 238

>gnl|CDD|216984 pfam02348, CTP_transf_3, Cytidylyltransferase

 Score =  133 bits (338), Expect = 2e-39
 Identities = 61/155 (39%), Positives = 91/155 (58%), Gaps = 2/155 (1%)

Query: 13  LVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIE 72
           +VVATD E+IA+  ++FGA V+M   S  +GT+R  EA++      +I+VN+QGDEPL++
Sbjct: 43  VVVATDSEEIADIAEKFGAGVVMRRGSLASGTDRFIEAVKAFLADEEIIVNLQGDEPLLQ 102

Query: 73  PEIIDGVVKALQAAPDAVFSTAVTSL-KPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNK 131
           P  I   ++ L+ A +   ST V  +   E+  +PN +K V+D+ GYA+YFSR  IPY +
Sbjct: 103 PTSILRAIEHLREAGEDYVSTLVKPVVSSEEILNPNPLKVVLDDAGYALYFSRSPIPYIR 162

Query: 132 SGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPL 166
                P   YL H GI ++    L  Y    P+ L
Sbjct: 163 D-HPAPLQLYLRHKGIYAFRKEHLIRYVIDTPSDL 196

This family consists of two main Cytidylyltransferase activities: 1) 3-deoxy-manno-octulosonate cytidylyltransferase,, EC:2.7.7.38 catalyzing the reaction:- CTP + 3-deoxy-D-manno-octulosonate <=> diphosphate + CMP-3-deoxy-D-manno-octulosonate, 2) acylneuraminate cytidylyltransferase EC:2.7.7.43, catalyzing the reaction:- CTP + N-acylneuraminate <=> diphosphate + CMP-N-acylneuraminate. NeuAc cytydilyltransferase of Mannheimia haemolytica has been characterized describing kinetics and regulation by substrate charge, energetic charge and amino-sugar demand. Length = 197

>gnl|CDD|133006 cd02513, CMP-NeuAc_Synthase, CMP-NeuAc_Synthase activates N-acetylneuraminic acid by adding CMP moiety

 Score = 52.5 bits (127), Expect = 1e-08
 Identities = 31/93 (33%), Positives = 49/93 (52%), Gaps = 9/93 (9%)

Query: 9   LFCGLVVATDDEKIAECCQQFGADVI-MTSESCRNGTERCNEALQ-------KLEKKYDI 60
           LF  +VV+TDDE+IAE  +++GA+V  +        T    + +        +L + +DI
Sbjct: 41  LFDRVVVSTDDEEIAEVARKYGAEVPFLRPAELATDTASSIDVILHALDQLEELGRDFDI 100

Query: 61  VVNIQGDEPLIEPEIIDGVVKALQAAP-DAVFS 92
           VV +Q   PL   E ID  ++ L +   D+VFS
Sbjct: 101 VVLLQPTSPLRSAEDIDEAIELLLSEGADSVFS 133

CMP-N-acetylneuraminic acid synthetase (CMP-NeuAc synthetase) or acylneuraminate cytidylyltransferase catalyzes the transfer the CMP moiety of CTP to the anomeric hydroxyl group of NeuAc in the presence of Mg++. It is the second to last step in the sialylation of the oligosaccharide component of glycoconjugates by providing the activated sugar-nucleotide cytidine 5'-monophosphate N-acetylneuraminic acid (CMP-Neu5Ac), the substrate for sialyltransferases. Eukaryotic CMP-NeuAc synthetases are predominantly located in the nucleus. The activated CMP-Neu5Ac diffuses from the nucleus into the cytoplasm. Length = 223

>gnl|CDD|133011 cd02518, GT2_SpsF, SpsF is a glycosyltrnasferase implicated in the synthesis of the spore coat

 Score = 46.8 bits (112), Expect = 2e-06
 Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 8/78 (10%)

Query: 13  LVVAT----DDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDE 68
           +V+AT    +D+ +    ++ G  V   SE   +   R  +A +  E   D+VV I GD 
Sbjct: 43  IVIATSTNEEDDPLEALAKKLGVKVFRGSEE--DVLGRYYQAAE--EYNADVVVRITGDC 98

Query: 69  PLIEPEIIDGVVKALQAA 86
           PLI+PEIID V++    +
Sbjct: 99  PLIDPEIIDAVIRLFLKS 116

Spore coat polysaccharide biosynthesis protein F (spsF) is a glycosyltransferase implicated in the synthesis of the spore coat in a variety of bacteria challenged by stress as starvation. The spsF gene is expressed in the late stage of coat development responsible for a terminal step in coat formation that involves the glycosylation of the coat. SpsF gene mutation resulted in spores that appeared normal. But, the spores tended to aggregate and had abnormal adsorption properties, indicating a surface alteration. Length = 233

>gnl|CDD|163336 TIGR03584, PseF, pseudaminic acid CMP-transferase

 Score = 42.7 bits (101), Expect = 4e-05
 Identities = 38/123 (30%), Positives = 61/123 (49%), Gaps = 12/123 (9%)

Query: 7   SFLFCGLVVATDDEKIAECCQQFGADV-IMTSESC---RNGT-ERCNEALQKLE--KKYD 59
           S LF  +VV+TDDE+IAE  + +GA V  +  +       GT      A+++L+  K+YD
Sbjct: 37  SGLFDKVVVSTDDEEIAEVAKSYGASVPFLRPKELADDFTGTAPVVKHAIEELKLQKQYD 96

Query: 60  IVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYA 119
               I    P ++ +I+    + L   P+A F  +VTS     AF   R   + +N G  
Sbjct: 97  HACCIYATAPFLQAKILKEAFELL-KQPNAHFVFSVTSF----AFPIQRAFKLKENGGVE 151

Query: 120 IYF 122
           ++F
Sbjct: 152 MFF 154

The sequences in this family include the pfam02348 (cytidyltransferase) domain and are homologous to the NeuA protein responsible for the transfer of CMP to neuraminic acid. According to , this gene is responsible for the transfer of CMP to the structurally related sugar, pseudaminic acid which is observed as a component of sugar modifications of flagellin in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci. Length = 222

>gnl|CDD|224774 COG1861, SpsF, Spore coat polysaccharide biosynthesis protein F, CMP-KDO synthetase homolog [Cell envelope biogenesis, outer membrane]

 Score = 39.7 bits (93), Expect = 5e-04
 Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 8/75 (10%)

Query: 13  LVVATDDEK----IAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDE 68
           +VVAT D++    + E C+  G  V   SE   +  +R   A++      D+VV + GD 
Sbjct: 47  IVVATSDKEEDDALEEVCRSHGFYVFRGSEE--DVLQRFIIAIKA--YSADVVVRVTGDN 102

Query: 69  PLIEPEIIDGVVKAL 83
           P ++PE++D  V   
Sbjct: 103 PFLDPELVDAAVDRH 117

Length = 241

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	215
COG1212	247	KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase	100.0
TIGR00466	238	kdsB 3-deoxy-D-manno-octulosonate cytidylyltransfe	99.97
PLN02917	293	CMP-KDO synthetase	99.97
COG1083	228	NeuA CMP-N-acetylneuraminic acid synthetase [Cell	99.96
TIGR03584	222	PseF pseudaminic acid CMP-transferase. The sequenc	99.95
PRK13368	238	3-deoxy-manno-octulosonate cytidylyltransferase; P	99.85
cd02513	223	CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N-	99.83
PF01128	221	IspD: 2-C-methyl-D-erythritol 4-phosphate cytidyly	99.79
PRK05450	245	3-deoxy-manno-octulosonate cytidylyltransferase; P	99.77
PRK13385	230	2-C-methyl-D-erythritol 4-phosphate cytidylyltrans	99.77
PF02348	217	CTP_transf_3: Cytidylyltransferase; InterPro: IPR0	99.74
PLN02728	252	2-C-methyl-D-erythritol 4-phosphate cytidylyltrans	99.74
COG1211	230	IspD 4-diphosphocytidyl-2-methyl-D-erithritol synt	99.73
cd02517	239	CMP-KDO-Synthetase CMP-KDO synthetase catalyzes th	99.72
PRK00155	227	ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyl	99.63
TIGR00453	217	ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyl	99.63
cd02516	218	CDP-ME_synthetase CDP-ME synthetase is involved in	99.44
PRK09382	378	ispDF bifunctional 2-C-methyl-D-erythritol 4-phosp	99.42
COG1207	460	GlmU N-acetylglucosamine-1-phosphate uridyltransfe	99.28
COG2068	199	Uncharacterized MobA-related protein [General func	99.24
TIGR03552	195	F420_cofC 2-phospho-L-lactate guanylyltransferase	99.19
cd02518	233	GT2_SpsF SpsF is a glycosyltrnasferase implicated	99.13
COG1861	241	SpsF Spore coat polysaccharide biosynthesis protei	99.11
PRK14356	456	glmU bifunctional N-acetylglucosamine-1-phosphate	99.05
cd02540	229	GT2_GlmU_N_bac N-terminal domain of bacterial GlmU	99.02
PRK14353	446	glmU bifunctional N-acetylglucosamine-1-phosphate	99.0
TIGR01173	451	glmU UDP-N-acetylglucosamine diphosphorylase/gluco	98.99
cd06915	223	NTP_transferase_WcbM_like WcbM_like is a subfamily	98.96
PRK14359	430	glmU bifunctional N-acetylglucosamine-1-phosphate	98.92
PRK14354	458	glmU bifunctional N-acetylglucosamine-1-phosphate	98.91
PRK14360	450	glmU bifunctional N-acetylglucosamine-1-phosphate	98.82
PRK14355	459	glmU bifunctional N-acetylglucosamine-1-phosphate	98.81
PRK00317	193	mobA molybdopterin-guanine dinucleotide biosynthes	98.73
PRK02726	200	molybdopterin-guanine dinucleotide biosynthesis pr	98.68
COG2266	177	GTP:adenosylcobinamide-phosphate guanylyltransfera	98.64
PF01983	217	CofC: Guanylyl transferase CofC like; InterPro: IP	98.57
PRK14358	481	glmU bifunctional N-acetylglucosamine-1-phosphate	98.57
PRK14352	482	glmU bifunctional N-acetylglucosamine-1-phosphate	98.53
cd04189	236	G1P_TT_long G1P_TT_long represents the long form o	98.51
PF12804	160	NTP_transf_3: MobA-like NTP transferase domain; PD	98.46
COG1920	210	Predicted nucleotidyltransferase, CobY/MobA/RfbA f	98.45
TIGR03310	188	matur_ygfJ molybdenum hydroxylase accessory protei	98.44
TIGR01208	353	rmlA_long glucose-1-phosphate thymidylylransferase	98.4
cd04182	186	GT_2_like_f GT_2_like_f is a subfamily of the glyc	98.39
PRK14357	448	glmU bifunctional N-acetylglucosamine-1-phosphate	98.38
cd02503	181	MobA MobA catalyzes the formation of molybdopterin	98.36
cd02538	240	G1P_TT_short G1P_TT_short is the short form of glu	98.33
TIGR02665	186	molyb_mobA molybdopterin-guanine dinucleotide bios	98.32
PRK14490	369	putative bifunctional molybdopterin-guanine dinucl	98.2
cd06425	233	M1P_guanylylT_B_like_N N-terminal domain of the M1	98.12
TIGR03202	190	pucB xanthine dehydrogenase accessory protein pucB	98.11
PRK00560	196	molybdopterin-guanine dinucleotide biosynthesis pr	98.11
PRK15480	292	glucose-1-phosphate thymidylyltransferase RfbA; Pr	97.99
cd06422	221	NTP_transferase_like_1 NTP_transferase_like_1 is a	97.98
TIGR01207	286	rmlA glucose-1-phosphate thymidylyltransferase, sh	97.93
PRK09451	456	glmU bifunctional N-acetylglucosamine-1-phosphate	97.91
TIGR01099	260	galU UTP-glucose-1-phosphate uridylyltransferase.	97.89
TIGR00454	183	conserved hypothetical protein TIGR00454. At this	97.88
TIGR01105	297	galF UTP-glucose-1-phosphate uridylyltransferase,	97.85
cd02541	267	UGPase_prokaryotic Prokaryotic UGPase catalyses th	97.83
COG1208	358	GCD1 Nucleoside-diphosphate-sugar pyrophosphorylas	97.76
PRK14500	346	putative bifunctional molybdopterin-guanine dinucl	97.75
cd06426	220	NTP_transferase_like_2 NTP_trnasferase_like_2 is a	97.61
TIGR02092	369	glgD glucose-1-phosphate adenylyltransferase, GlgD	97.56
PRK00576	178	molybdopterin-guanine dinucleotide biosynthesis pr	97.53
PF00483	248	NTP_transferase: Nucleotidyl transferase This Pros	97.45
cd06428	257	M1P_guanylylT_A_like_N N-terminal domain of M1P_gu	97.45
KOG1322	371	consensus GDP-mannose pyrophosphorylase/mannose-1-	97.44
PRK10122	297	GalU regulator GalF; Provisional	97.43
cd02524	253	G1P_cytidylyltransferase G1P_cytidylyltransferase	97.42
COG1209	286	RfbA dTDP-glucose pyrophosphorylase [Cell envelope	97.39
cd02523	229	PC_cytidylyltransferase Phosphocholine cytidylyltr	97.32
PRK13389	302	UTP--glucose-1-phosphate uridylyltransferase subun	97.31
TIGR02091	361	glgC glucose-1-phosphate adenylyltransferase. This	97.3
TIGR02623	254	G1P_cyt_trans glucose-1-phosphate cytidylyltransfe	97.27
PRK05293	380	glgC glucose-1-phosphate adenylyltransferase; Prov	97.19
COG0746	192	MobA Molybdopterin-guanine dinucleotide biosynthes	97.18
PRK14489	366	putative bifunctional molybdopterin-guanine dinucl	97.16
PRK02862	429	glgC glucose-1-phosphate adenylyltransferase; Prov	97.02
cd04183	231	GT2_BcE_like GT2_BcbE_like is likely involved in t	96.89
cd04181	217	NTP_transferase NTP_transferases catalyze the tran	96.71
PRK00725	425	glgC glucose-1-phosphate adenylyltransferase; Prov	96.42
PLN02241	436	glucose-1-phosphate adenylyltransferase	96.37
COG1213	239	Predicted sugar nucleotidyltransferases [Cell enve	96.31
PRK00844	407	glgC glucose-1-phosphate adenylyltransferase; Prov	96.17
cd02509	274	GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransf	95.61
cd06438	183	EpsO_like EpsO protein participates in the methano	95.12
PF09837	122	DUF2064: Uncharacterized protein conserved in bact	95.1
cd04197	217	eIF-2B_epsilon_N The N-terminal domain of epsilon	94.47
TIGR03030	713	CelA cellulose synthase catalytic subunit (UDP-for	94.38
PRK11498	852	bcsA cellulose synthase catalytic subunit; Provisi	93.97
cd06435	236	CESA_NdvC_like NdvC_like proteins in this family a	93.96
cd02508	200	ADP_Glucose_PP ADP-glucose pyrophosphorylase is in	93.5
cd06421	234	CESA_CelA_like CESA_CelA_like are involved in the	93.48
cd02511	229	Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4	93.47
cd04198	214	eIF-2B_gamma_N The N-terminal domain of gamma subu	93.31
cd04195	201	GT2_AmsE_like GT2_AmsE_like is involved in exopoly	92.93
PF04028	74	DUF374: Domain of unknown function (DUF374); Inter	92.56
PRK13915	306	putative glucosyl-3-phosphoglycerate synthase; Pro	91.65
cd04187	181	DPM1_like_bac Bacterial DPM1_like enzymes are rela	91.4
PRK10714	325	undecaprenyl phosphate 4-deoxy-4-formamido-L-arabi	90.95
PRK11204	420	N-glycosyltransferase; Provisional	90.76
TIGR01479	468	GMP_PMI mannose-1-phosphate guanylyltransferase/ma	90.61
COG0448	393	GlgC ADP-glucose pyrophosphorylase [Carbohydrate t	90.16
PF00535	169	Glycos_transf_2: Glycosyl transferase family 2; In	89.53
cd06439	251	CESA_like_1 CESA_like_1 is a member of the cellulo	89.52
cd02525	249	Succinoglycan_BP_ExoA ExoA is involved in the bios	88.52
cd06423	180	CESA_like CESA_like is the cellulose synthase supe	88.27
cd04192	229	GT_2_like_e Subfamily of Glycosyltransferase Famil	85.64
PLN02726	243	dolichyl-phosphate beta-D-mannosyltransferase	85.43
COG2121	214	Uncharacterized protein conserved in bacteria [Fun	84.8
COG1210	291	GalU UDP-glucose pyrophosphorylase [Cell envelope	84.29
cd04188	211	DPG_synthase DPG_synthase is involved in protein N	84.23
cd02520	196	Glucosylceramide_synthase Glucosylceramide synthas	83.77
cd00761	156	Glyco_tranf_GTA_type Glycosyltransferase family A	83.22
PRK14583	444	hmsR N-glycosyltransferase; Provisional	83.16
cd04184	202	GT2_RfbC_Mx_like Myxococcus xanthus RfbC like prot	83.09
cd02510	299	pp-GalNAc-T pp-GalNAc-T initiates the formation of	82.99
cd04186	166	GT_2_like_c Subfamily of Glycosyltransferase Famil	82.37
cd06442	224	DPM1_like DPM1_like represents putative enzymes si	81.92
cd06427	241	CESA_like_2 CESA_like_2 is a member of the cellulo	80.81
cd04191	254	Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elon	80.81
PRK05454	691	glucosyltransferase MdoH; Provisional	80.78
cd04196	214	GT_2_like_d Subfamily of Glycosyltransferase Famil	80.67
cd04179	185	DPM_DPG-synthase_like DPM_DPG-synthase_like is a m	80.31

>COG1212 KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase [Cell envelope biogenesis, outer membrane]

Probab=100.00  E-value=1.1e-38  Score=245.11  Aligned_cols=205  Identities=44%  Similarity=0.736  Sum_probs=184.0

Q ss_pred             ccccCCCCcEEEEcCcHHHHHHHHHcCCeEEeCCCCCCCchHHHHHHHHHhc-CCCCEEEEecCCCCCCCHHHHHHHHHH
Q 027992            4 MCHSFLFCGLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKA   82 (215)
Q Consensus         4 a~~~~~~d~ivV~td~~~i~~~~~~~g~~v~~~~~~~~~~~~~i~~~l~~~~-~~~d~v~~~~~d~Pli~~~~i~~~i~~   82 (215)
                      |.++ ..++|||+||+++|.+.++++|.+++++..++.+|++|+.+++..+. .+.++|+.+|||.||+.++.|+++++.
T Consensus        38 a~~s-~~~rvvVATDde~I~~av~~~G~~avmT~~~h~SGTdR~~Ev~~~l~~~~~~iIVNvQGDeP~i~p~~I~~~~~~  116 (247)
T COG1212          38 ALKS-GADRVVVATDDERIAEAVQAFGGEAVMTSKDHQSGTDRLAEVVEKLGLPDDEIIVNVQGDEPFIEPEVIRAVAEN  116 (247)
T ss_pred             HHHc-CCCeEEEEcCCHHHHHHHHHhCCEEEecCCCCCCccHHHHHHHHhcCCCcceEEEEccCCCCCCCHHHHHHHHHH
Confidence            4454 78999999999999999999999999999999999999999999984 466899999999999999999999999


Q ss_pred             HHcCCCceEEeecccCC-CCccCCCCceEEEEcCCCceecccCCCCCCCCCCCCCCCCCeeEEeeeeeechHHHhhCcCC
Q 027992           83 LQAAPDAVFSTAVTSLK-PEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGL  161 (215)
Q Consensus        83 ~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~ip~~~~~~~~q~~p~~~~~~~~~~~~~~l~~~~~~  161 (215)
                      ++++ +..+++.+.+.. .++.++|+-+|++.+.+|+++||+|++|||.|+.  ....|+++|+|+|+|+.++|.+|..+
T Consensus       117 L~~~-~~~~aTl~~~i~~~ee~~nPN~VKvV~d~~g~ALYFSRs~iP~~rd~--~~~~p~l~HIGIYayr~~~L~~f~~~  193 (247)
T COG1212         117 LENS-NADMATLAVKITDEEEAFNPNVVKVVLDKEGYALYFSRAPIPYGRDN--FGGTPFLRHIGIYAYRAGFLERFVAL  193 (247)
T ss_pred             HHhC-CcceeeeeeecCCHHHhcCCCcEEEEEcCCCcEEEEEcCCCCCcccc--cCCcchhheeehHHhHHHHHHHHHhc
Confidence            9865 677777777765 4556899999999999999999999999998864  23378999999999999999999999


Q ss_pred             CCCCCCCccchhhhhhhhcCCeeEEEEec-CCCCCCCCHHHHHHHHHHHHhh
Q 027992          162 HPTPLQLEEDLEQLKVLENGYKMKVIKVD-HEAHGVDAPEDVEKIESFMRER  212 (215)
Q Consensus       162 ~~~~~~~~e~l~~~~~~~~g~~v~~~~~~-~~~idIdt~~Dl~~ae~il~~~  212 (215)
                      .++++|+.|.|||+|++|.|++|++-..+ ..+++|||++||+.|+++++..
T Consensus       194 ~ps~LE~~E~LEQLR~Le~G~kI~v~i~~~~p~~gVDT~EDLe~v~~~~~~~  245 (247)
T COG1212         194 KPSPLEKIESLEQLRVLENGEKIHVEIVKEVPSIGVDTPEDLERVRKILSNN  245 (247)
T ss_pred             CCchhHHHHHHHHHHHHHcCCeeEEEEeccCCCCCCCCHHHHHHHHHHHHhh
Confidence            99999999999999999999999998876 6789999999999999999764

>TIGR00466 kdsB 3-deoxy-D-manno-octulosonate cytidylyltransferase

Probab=99.97  E-value=2.7e-30  Score=207.77  Aligned_cols=194  Identities=42%  Similarity=0.664  Sum_probs=159.1

Q ss_pred             CCCcEEEEcCcHHHHHHHHHcCCeEEeCCCCCCCchHHHHHHHHHhc-CCCCEEEEecCCCCCCCHHHHHHHHHHHHcCC
Q 027992            9 LFCGLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAP   87 (215)
Q Consensus         9 ~~d~ivV~td~~~i~~~~~~~g~~v~~~~~~~~~~~~~i~~~l~~~~-~~~d~v~~~~~d~Pli~~~~i~~~i~~~~~~~   87 (215)
                      .+++|+|+|+++++.+.++++|++++++.....+|++++..+++.+. .+.|+|++++||+||++++.|+++++.+.+. 
T Consensus        38 ~~d~VvVvt~~~~i~~~~~~~g~~~v~~~~~~~~Gt~r~~~~~~~l~~~~~d~Vli~~gD~Pli~~~~I~~li~~~~~~-  116 (238)
T TIGR00466        38 GADRCIVATDDESVAQTCQKFGIEVCMTSKHHNSGTERLAEVVEKLALKDDERIVNLQGDEPFIPKEIIRQVADNLATK-  116 (238)
T ss_pred             CCCeEEEEeCHHHHHHHHHHcCCEEEEeCCCCCChhHHHHHHHHHhCCCCCCEEEEEcCCcCcCCHHHHHHHHHHHhcC-
Confidence            49999999999999999999999887765566788988877776652 2568999999999999999999999998542 


Q ss_pred             CceEEeecccCC-CCccCCCCceEEEEcCCCceecccCCCCCCCCCCCCCCCCC----eeEEeeeeeechHHHhhCcCCC
Q 027992           88 DAVFSTAVTSLK-PEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFP----YLLHLGIQSYDSNFLKIYPGLH  162 (215)
Q Consensus        88 ~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~ip~~~~~~~~q~~p----~~~~~~~~~~~~~~l~~~~~~~  162 (215)
                      +..+++.+.+.. ....++|+++|++.+.+|++.||++..+|+.|+..+..++|    ++.|.|.|+|+.++|.+|..++
T Consensus       117 ~~~~a~~~~~~~d~~~~~~p~~vk~v~~~~g~alyfsr~~ip~~R~~~~~~~tpq~~~~~~h~Giy~~~~~~L~~~~~~~  196 (238)
T TIGR00466       117 NVPMAALAVKIHDAEEAFNPNAVKVVLDSQGYALYFSRSLIPFDRDFFAKRQTPVGDNLLRHIGIYGYRAGFIEEYVAWK  196 (238)
T ss_pred             CCCEEEEeeecCCHHHccCCCceEEEeCCCCeEEEecCCCCCCCCCcccccccccccceeEEEEEEeCCHHHHHHHHhCC
Confidence            233444455654 34456789999887788999999999888888754322333    5679999999999999999999


Q ss_pred             CCCCCCccchhhhhhhhcCCeeEEEEecCC-CCCCCCHHHHH
Q 027992          163 PTPLQLEEDLEQLKVLENGYKMKVIKVDHE-AHGVDAPEDVE  203 (215)
Q Consensus       163 ~~~~~~~e~l~~~~~~~~g~~v~~~~~~~~-~idIdt~~Dl~  203 (215)
                      ++++|+.|.|||+|++++|++|+++..+.. ++.||||+|++
T Consensus       197 ~~~le~~e~leqlr~le~g~~i~~~~~~~~~~~~vdt~~d~~  238 (238)
T TIGR00466       197 PCVLEEIEKLEQLRVLYYGEKIHVKIAQEVPSVGVDTQEDLE  238 (238)
T ss_pred             CCcccccchhHHHhhhhcCCceEEEEeCCCCCCCCCChHHcC
Confidence            999999999999999999999999988755 78999999973

>PLN02917 CMP-KDO synthetase

Probab=99.97  E-value=1.2e-29  Score=209.24  Aligned_cols=212  Identities=89%  Similarity=1.328  Sum_probs=176.3

Q ss_pred             ccccCCCCcEEEEcCcHHHHHHHHHcCCeEEeCCCCCCCchHHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHHH
Q 027992            4 MCHSFLFCGLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKAL   83 (215)
Q Consensus         4 a~~~~~~d~ivV~td~~~i~~~~~~~g~~v~~~~~~~~~~~~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~~   83 (215)
                      +++++.++.|||+++++++.+.+.++|+.++.++....+|++++..|+..+..+.|++++++||+||+++++|+++++.+
T Consensus        82 a~~~~~~~~VVV~~~~e~I~~~~~~~~v~vi~~~~~~~~GT~~~~~a~~~l~~~~d~Vlil~gD~PlI~~~tI~~li~~~  161 (293)
T PLN02917         82 AKLATTLDHIVVATDDERIAECCRGFGADVIMTSESCRNGTERCNEALKKLEKKYDIVVNIQGDEPLIEPEIIDGVVKAL  161 (293)
T ss_pred             HHcCCCCCEEEEECChHHHHHHHHHcCCEEEeCCcccCCchHHHHHHHHhccCCCCEEEEecCCcCCCCHHHHHHHHHHH
Confidence            44566778899999999999999888988877776667888888888888854579999999999999999999999998


Q ss_pred             HcCCCceEEeecccCCCCccCCCCceEEEEcCCCceecccCCCCCCCCCCCCCCCCCeeEEeeeeeechHHHhhCcCCCC
Q 027992           84 QAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHP  163 (215)
Q Consensus        84 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ip~~~~~~~~q~~p~~~~~~~~~~~~~~l~~~~~~~~  163 (215)
                      .++.+.++++.+.+.+.+....+.+++++.+++|.++||++..||+.++....|..+...|.|.|+|+.+.|..+..+..
T Consensus       162 ~~~~~~iv~t~~~~~~~~~~~~ygrv~vv~~~~g~alyfsr~~Ipe~kd~~~~~~~i~~~n~Giy~f~~~~L~~l~~l~~  241 (293)
T PLN02917        162 QAAPDAVFSTAVTSLKPEDASDPNRVKCVVDNQGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDAKFLKIYPELPP  241 (293)
T ss_pred             HhcCCceEEEEeeecCHHHhcCCCceEEEECCCCeEEEeecCcCCcCCCcccccccceEEEEEEEEeCHHHHHHHHcCCC
Confidence            76566666655454443334566788877777898889999888887764445556678899999999998888888888


Q ss_pred             CCCCCccchhhhhhhhcCCeeEEEEecCCCCCCCCHHHHHHHHHHHHhhcCC
Q 027992          164 TPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAPEDVEKIESFMRERNLS  215 (215)
Q Consensus       164 ~~~~~~e~l~~~~~~~~g~~v~~~~~~~~~idIdt~~Dl~~ae~il~~~~~~  215 (215)
                      +..+++++|+++++++.|.+|..+..+.+.+.|||++||..||++++.+|+|
T Consensus       242 ~n~e~e~yLtdl~~le~G~~i~~~~~~~~~~GVnt~~dL~~ae~~~~~~~~~  293 (293)
T PLN02917        242 TPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDTPEDVEKIEALMRERNIS  293 (293)
T ss_pred             CcccchhccHHHHHHhCCCceEEEEeCCCCCCCCCHHHHHHHHHHHHHcCCC
Confidence            8888888999999988999999888777899999999999999999999886

>COG1083 NeuA CMP-N-acetylneuraminic acid synthetase [Cell envelope biogenesis, outer membrane]

Probab=99.96  E-value=1e-28  Score=188.79  Aligned_cols=181  Identities=18%  Similarity=0.188  Sum_probs=137.0

Q ss_pred             ccccccCCCCcEEEEcCcHHHHHHHHHcCCeE-EeCCCCCCCchHH----HHHHHHHhcCCCCEEEEecCCCCCCCHHHH
Q 027992            2 LVMCHSFLFCGLVVATDDEKIAECCQQFGADV-IMTSESCRNGTER----CNEALQKLEKKYDIVVNIQGDEPLIEPEII   76 (215)
Q Consensus         2 ~~a~~~~~~d~ivV~td~~~i~~~~~~~g~~v-~~~~~~~~~~~~~----i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i   76 (215)
                      .+|+.|+.||+|||+||+++|.+.|+++|+++ +.||+++++|+++    +.+++..+....|.+++++||+||++..+|
T Consensus        36 ~aA~ns~~fd~VviSsDs~~Il~~A~~ygak~~~~Rp~~LA~D~ast~~~~lh~le~~~~~~~~~~lLq~TsPLl~~~~i  115 (228)
T COG1083          36 EAALNSKLFDKVVISSDSEEILEEAKKYGAKVFLKRPKELASDRASTIDAALHALESFNIDEDTLILLQPTSPLLTSLHI  115 (228)
T ss_pred             HHHhcCCccceEEEcCCcHHHHHHHHHhCccccccCChhhccCchhHHHHHHHHHHHhccccCeeEEeccCccccchhHH
Confidence            47899999999999999999999999999999 8999999998774    456666665677899999999999999999


Q ss_pred             HHHHHHHH-cCCCceEEeecccCCCCccCCCCceEEEEcCCCceecccCCCCCCCCCCCCCCCCCeeEEeeeeeech--H
Q 027992           77 DGVVKALQ-AAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDS--N  153 (215)
Q Consensus        77 ~~~i~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ip~~~~~~~~q~~p~~~~~~~~~~~~--~  153 (215)
                      +++++.|. ...+++++++  +..    ++|...  ....+|....+....  ..  ..|||++|..|+.||.+|..  +
T Consensus       116 k~A~e~f~~~~~~sl~sa~--e~e----~~p~k~--f~~~~~~~~~~~~~~--~~--~~rrQ~Lpk~Y~~NgaiYi~~~~  183 (228)
T COG1083         116 KEAFEKFLNNQYDSLFSAV--ECE----HHPYKA--FSLNNGEVKPVNEDP--DF--ETRRQDLPKAYRENGAIYINKKD  183 (228)
T ss_pred             HHHHHHHhcCCCcceEEEe--ecc----cchHHH--HHhcCCceeecccCC--cc--ccccccchhhhhhcCcEEEehHH
Confidence            99999996 3568888864  543    233332  223446655443321  11  25799999999999877743  4


Q ss_pred             HHhhCcCCCCCCCCCccchhhhhhhhcCCeeEEEEec-CCCCCCCCHHHHHHHHHHHHhh
Q 027992          154 FLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVD-HEAHGVDAPEDVEKIESFMRER  212 (215)
Q Consensus       154 ~l~~~~~~~~~~~~~~e~l~~~~~~~~g~~v~~~~~~-~~~idIdt~~Dl~~ae~il~~~  212 (215)
                      .+.+..                .+  .+.+..+++++ .+++||||+.||++||.++..+
T Consensus       184 ~l~e~~----------------~~--f~~~~~~y~m~~~~~~DID~~~Dl~iae~l~~~~  225 (228)
T COG1083         184 ALLEND----------------CF--FIPNTILYEMPEDESIDIDTELDLEIAENLIFLK  225 (228)
T ss_pred             HHhhcC----------------ce--ecCCceEEEcCcccccccccHHhHHHHHHHhhhh
Confidence            333211                11  34456667764 7999999999999999998754

>TIGR03584 PseF pseudaminic acid CMP-transferase

Probab=99.95  E-value=5.6e-27  Score=186.56  Aligned_cols=178  Identities=24%  Similarity=0.302  Sum_probs=132.0

Q ss_pred             cccccCCCCcEEEEcCcHHHHHHHHHcCCeE-EeCCCCCCCch----HHHHHHHHHhc--CCCCEEEEecCCCCCCCHHH
Q 027992            3 VMCHSFLFCGLVVATDDEKIAECCQQFGADV-IMTSESCRNGT----ERCNEALQKLE--KKYDIVVNIQGDEPLIEPEI   75 (215)
Q Consensus         3 ~a~~~~~~d~ivV~td~~~i~~~~~~~g~~v-~~~~~~~~~~~----~~i~~~l~~~~--~~~d~v~~~~~d~Pli~~~~   75 (215)
                      +|++++.++.|+|+||+++|+++++++|+.+ +.|+++++++.    .++.+|+..+.  .+.|+|++++||+||+++++
T Consensus        33 ~a~~s~~~d~IvVstd~~~i~~~a~~~g~~v~~~r~~~l~~d~~~~~~si~~~l~~l~~~~~~d~v~~l~~tsPl~~~~~  112 (222)
T TIGR03584        33 AALNSGLFDKVVVSTDDEEIAEVAKSYGASVPFLRPKELADDFTGTAPVVKHAIEELKLQKQYDHACCIYATAPFLQAKI  112 (222)
T ss_pred             HHHhCCCCCEEEEeCCCHHHHHHHHHcCCEeEEeChHHHcCCCCCchHHHHHHHHHHhhcCCCCEEEEecCCCCcCCHHH
Confidence            5677889999999999999999999999987 56888776543    46899998773  34799999999999999999


Q ss_pred             HHHHHHHHHc-CCCceEEeecccCCCCccCCCCceEEEEcCCCceecccCCCCCCCCCCCCCCCCCeeEEeeeeee--ch
Q 027992           76 IDGVVKALQA-APDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSY--DS  152 (215)
Q Consensus        76 i~~~i~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ip~~~~~~~~q~~p~~~~~~~~~~--~~  152 (215)
                      |+++++.+.+ +.|+++++.  +..    ++|.+.+ ..+++|.+..+...    . ...|||++|+.|..||.+|  +.
T Consensus       113 I~~~i~~~~~~~~ds~~sv~--~~~----~~~~~~~-~~~~~g~~~~~~~~----~-~~~~rQd~~~~y~~nga~y~~~~  180 (222)
T TIGR03584       113 LKEAFELLKQPNAHFVFSVT--SFA----FPIQRAF-KLKENGGVEMFFPE----H-FNTRSQDLEEAYHDAGQFYWGKS  180 (222)
T ss_pred             HHHHHHHHHhCCCCEEEEee--ccC----CChHHhe-EECCCCcEEecCCC----c-ccCCCCCCchheeeCCeEEEEEH
Confidence            9999999974 478888865  432    2333322 22466765443321    1 1247899998888888766  55


Q ss_pred             HHHhhCcCCCCCCCCCccchhhhhhhhcCCeeEEEEec-CCCCCCCCHHHHHHHHHHHH
Q 027992          153 NFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVD-HEAHGVDAPEDVEKIESFMR  210 (215)
Q Consensus       153 ~~l~~~~~~~~~~~~~~e~l~~~~~~~~g~~v~~~~~~-~~~idIdt~~Dl~~ae~il~  210 (215)
                      +.+.+...                +  .|.++..++++ .+++||||++||++||.+++
T Consensus       181 ~~~~~~~~----------------~--~~~~~~~~~m~~~~~iDID~~~D~~~ae~l~~  221 (222)
T TIGR03584       181 QAWLESGP----------------I--FSPHSIPIVLPRHLVQDIDTLEDWERAELLYK  221 (222)
T ss_pred             HHHHhcCC----------------c--cCCCcEEEEeCccceeCCCCHHHHHHHHHHHh
Confidence            54433221                1  35667777764 79999999999999999974

The sequences in this family include the pfam02348 (cytidyltransferase) domain and are homologous to the NeuA protein responsible for the transfer of CMP to neuraminic acid. According to, this gene is responsible for the transfer of CMP to the structurally related sugar, pseudaminic acid which is observed as a component of sugar modifications of flagellin in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci.

>PRK13368 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional

Probab=99.85  E-value=1.1e-19  Score=146.03  Aligned_cols=198  Identities=38%  Similarity=0.638  Sum_probs=132.5

Q ss_pred             cccCCCCcEEEEcCcHHHHHHHHHcCCeEEeCCCCCCCchHHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHHHH
Q 027992            5 CHSFLFCGLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQ   84 (215)
Q Consensus         5 ~~~~~~d~ivV~td~~~i~~~~~~~g~~v~~~~~~~~~~~~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~~~   84 (215)
                      .++..+++|+|+|+++++++.++.+|++++.++....+|+.++.+++..+  +.|.+++++||+||+++++|+++++.+.
T Consensus        38 ~~~~~~~~ivv~t~~~~i~~~~~~~~~~v~~~~~~~~~g~~~~~~a~~~~--~~d~~lv~~~D~P~i~~~~i~~l~~~~~  115 (238)
T PRK13368         38 AQAAGVEEVYVATDDQRIEDAVEAFGGKVVMTSDDHLSGTDRLAEVMLKI--EADIYINVQGDEPMIRPRDIDTLIQPML  115 (238)
T ss_pred             HhcCCCCeEEEECChHHHHHHHHHcCCeEEecCccCCCccHHHHHHHHhC--CCCEEEEEcCCcCcCCHHHHHHHHHHHH
Confidence            34457999999999999999998899988767666667888888888876  4689999999999999999999999986


Q ss_pred             cCCCceEEeecccCCC-CccCCCCceEEEEcCCCceecccCCCCCCCCCCCCCCCCC--eeEEeeeeeechHHHhhCcCC
Q 027992           85 AAPDAVFSTAVTSLKP-EDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFP--YLLHLGIQSYDSNFLKIYPGL  161 (215)
Q Consensus        85 ~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~ip~~~~~~~~q~~p--~~~~~~~~~~~~~~l~~~~~~  161 (215)
                      ++..+.+++...+... ...+||...++..+++|.+..|.+.+.+     .++|+.+  +..+.+.|+|+.+.+..+...
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~v~~~~~~~~~-----~~~~~~~~~~~~n~giy~~~~~~l~~~~~~  190 (238)
T PRK13368        116 DDPSINVATLCAPISTEEEFESPNVVKVVVDKNGDALYFSRSPIP-----SRRDGESARYLKHVGIYAFRRDVLQQFSQL  190 (238)
T ss_pred             HCCCccceeEEEEcCCHHHhcCcCCCEEEECCCCCEEEeeCCCCC-----CCCCCCCCceeEEEEEEEeCHHHHHHHHcC
Confidence            4333222221222210 0112344433333556776555432112     2466654  355777899998887765432


Q ss_pred             CCCCCCCccchhhhhhhhcCCeeEEEEecCCCCCCCCHHHHHHHHHHH
Q 027992          162 HPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAPEDVEKIESFM  209 (215)
Q Consensus       162 ~~~~~~~~e~l~~~~~~~~g~~v~~~~~~~~~idIdt~~Dl~~ae~il  209 (215)
                      ....++..+..+..+++..|.++..+..+..++|||||+||..||.++
T Consensus       191 ~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~DI~t~~Dl~~a~~~~  238 (238)
T PRK13368        191 PETPLEQIESLEQLRALEHGEKIRMVEVAATSIGVDTPEDLERVRAIM  238 (238)
T ss_pred             CCChhhhhhhHHHHHHHHCCCceEEEEeCCCCCCCCCHHHHHHHHHhC
Confidence            211111122223334555688898888778899999999999999874

>cd02513 CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N-acetylneuraminic acid by adding CMP moiety

Probab=99.83  E-value=2.4e-19  Score=142.52  Aligned_cols=175  Identities=27%  Similarity=0.356  Sum_probs=118.4

Q ss_pred             ccccCCCCcEEEEcCcHHHHHHHHHcCCe-EEeCCCCCCCc----hHHHHHHHHHhcC---CCCEEEEecCCCCCCCHHH
Q 027992            4 MCHSFLFCGLVVATDDEKIAECCQQFGAD-VIMTSESCRNG----TERCNEALQKLEK---KYDIVVNIQGDEPLIEPEI   75 (215)
Q Consensus         4 a~~~~~~d~ivV~td~~~i~~~~~~~g~~-v~~~~~~~~~~----~~~i~~~l~~~~~---~~d~v~~~~~d~Pli~~~~   75 (215)
                      +++++.+++|+|+|+++++.+.+.++|+. ++.+++++++|    ..++.++++.+..   ..|.+++++||+||+++++
T Consensus        36 l~~~~~~~~IvV~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~d~vlv~~~D~P~i~~~~  115 (223)
T cd02513          36 ALESKLFDRVVVSTDDEEIAEVARKYGAEVPFLRPAELATDTASSIDVILHALDQLEELGRDFDIVVLLQPTSPLRSAED  115 (223)
T ss_pred             HHhCCCCCEEEEECCcHHHHHHHHHhCCCceeeCChHHCCCCCCcHHHHHHHHHHHHHhCCCCCEEEEeCCCCCcCCHHH
Confidence            44566789999999999999888888873 45676665543    3467888877642   3689999999999999999


Q ss_pred             HHHHHHHHHc-CCCceEEeecccCCCCccCCCCceEEEEcCCCc-eecccCCCCCCCCCCCCCCCCCeeEEeee--eeec
Q 027992           76 IDGVVKALQA-APDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGY-AIYFSRGLIPYNKSGKVNPQFPYLLHLGI--QSYD  151 (215)
Q Consensus        76 i~~~i~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~ip~~~~~~~~q~~p~~~~~~~--~~~~  151 (215)
                      |+++++.+.. +.++++++.  +.+.    +|.... ..+++|. ...+      ..+...++|++|..+..++  |+++
T Consensus       116 i~~~i~~~~~~~~~~~~~~~--~~~~----~~~~~~-~~~~~~~~~~~~------~~~~~~~~q~~~~~~~~n~~~y~~~  182 (223)
T cd02513         116 IDEAIELLLSEGADSVFSVT--EFHR----FPWRAL-GLDDNGLEPVNY------PEDKRTRRQDLPPAYHENGAIYIAK  182 (223)
T ss_pred             HHHHHHHHHhCCCCEEEEEE--ecCc----CcHHhe-eeccCCceeccC------cccccCCcCCChhHeeECCEEEEEE
Confidence            9999999964 457777753  3321    112111 1223331 2211      1223357899997776666  5556


Q ss_pred             hHHHhhCcCCCCCCCCCccchhhhhhhhcCCeeEEEEe-cCCCCCCCCHHHHHHHHHHH
Q 027992          152 SNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKV-DHEAHGVDAPEDVEKIESFM  209 (215)
Q Consensus       152 ~~~l~~~~~~~~~~~~~~e~l~~~~~~~~g~~v~~~~~-~~~~idIdt~~Dl~~ae~il  209 (215)
                      .+.+.+...+                  .|.++..+++ +.+++||||++||++||.++
T Consensus       183 ~~~~~~~~~~------------------~g~~~~~~~~~~~~~~dI~~~~D~~~ae~~~  223 (223)
T cd02513         183 REALLESNSF------------------FGGKTGPYEMPRERSIDIDTEEDFELAEALL  223 (223)
T ss_pred             HHHHHhcCCc------------------cCCCeEEEEeCccceeCCCCHHHHHHHHHhC
Confidence            6655432211                  4677766665 57999999999999999874

CMP-N-acetylneuraminic acid synthetase (CMP-NeuAc synthetase) or acylneuraminate cytidylyltransferase catalyzes the transfer the CMP moiety of CTP to the anomeric hydroxyl group of NeuAc in the presence of Mg++. It is the second to last step in the sialylation of the oligosaccharide component of glycoconjugates by providing the activated sugar-nucleotide cytidine 5'-monophosphate N-acetylneuraminic acid (CMP-Neu5Ac), the substrate for sialyltransferases. Eukaryotic CMP-NeuAc synthetases are predominantly located in the nucleus. The activated CMP-Neu5Ac diffuses from the nucleus into the cytoplasm.

>PF01128 IspD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; InterPro: IPR001228 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, a bacterial ispD protein, catalyzes the third step of the deoxyxylulose-5-phosphate pathway (DXP) of isoprenoid biosynthesis; the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate []

Probab=99.79  E-value=2.7e-18  Score=135.89  Aligned_cols=178  Identities=20%  Similarity=0.311  Sum_probs=115.2

Q ss_pred             cccCCCCcEEEEcCcHH---HHHHHHHcCCeEEeCCCCCCCchHHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHH
Q 027992            5 CHSFLFCGLVVATDDEK---IAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVK   81 (215)
Q Consensus         5 ~~~~~~d~ivV~td~~~---i~~~~~~~g~~v~~~~~~~~~~~~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~   81 (215)
                      .+++.+++|+|++..++   +++++.+..+.++. ...  +-..++++||..+....|+|++|+|.+||++++.|+++++
T Consensus        39 ~~~~~i~~Ivvv~~~~~~~~~~~~~~~~~v~iv~-GG~--tR~~SV~ngL~~l~~~~d~VlIHDaaRPfv~~~~i~~~i~  115 (221)
T PF01128_consen   39 LASPEIDEIVVVVPPEDIDYVEELLSKKKVKIVE-GGA--TRQESVYNGLKALAEDCDIVLIHDAARPFVSPELIDRVIE  115 (221)
T ss_dssp             HTTTTESEEEEEESGGGHHHHHHHHHHTTEEEEE---S--SHHHHHHHHHHCHHCTSSEEEEEETTSTT--HHHHHHHHH
T ss_pred             hcCCCCCeEEEEecchhHHHHHHhhcCCCEEEec-CCh--hHHHHHHHHHHHHHcCCCEEEEEccccCCCCHHHHHHHHH
Confidence            35688999999996654   44555553333332 111  2345789999998766699999999999999999999999


Q ss_pred             HHHcCCCceEEeecccCCCCccCCCCceEEEEcCCCceecccCCCCCCCCCCCCCCCCCeeEEeeeeeechHHHhh-CcC
Q 027992           82 ALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKI-YPG  160 (215)
Q Consensus        82 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ip~~~~~~~~q~~p~~~~~~~~~~~~~~l~~-~~~  160 (215)
                      .++++.+++++.  .|..       +|++.+ +.+|.+.   +.   .+|+.       .+..+++|+|+.+.|.+ |..
T Consensus       116 ~~~~~~~aai~~--~p~~-------DTik~v-~~~~~v~---~t---ldR~~-------l~~~QTPQ~F~~~~l~~a~~~  172 (221)
T PF01128_consen  116 AAREGHGAAIPA--LPVT-------DTIKRV-DDDGFVT---ET---LDRSK-------LWAVQTPQAFRFELLLEAYEK  172 (221)
T ss_dssp             HHHHTCSEEEEE--EE-S-------SEEEEE-STTSBEE---EE---ETGGG-------EEEEEEEEEEEHHHHHHHHHT
T ss_pred             HHHhhcCcEEEE--Eecc-------ccEEEE-ecCCccc---cc---CCHHH-------eeeecCCCeecHHHHHHHHHH
Confidence            998745777774  4554       898876 4566543   11   13332       56678899999877654 332


Q ss_pred             CCCCCCCCccchhhhhhhh-cCCeeEEEEecCCCCCCCCHHHHHHHHHHHHh
Q 027992          161 LHPTPLQLEEDLEQLKVLE-NGYKMKVIKVDHEAHGVDAPEDVEKIESFMRE  211 (215)
Q Consensus       161 ~~~~~~~~~e~l~~~~~~~-~g~~v~~~~~~~~~idIdt~~Dl~~ae~il~~  211 (215)
                      ...   +.....+...+++ .|.++.+++++..|++||||+||.+||++|++
T Consensus       173 a~~---~~~~~tDdasl~~~~g~~v~~V~G~~~N~KIT~peDl~~ae~ll~~  221 (221)
T PF01128_consen  173 ADE---EGFEFTDDASLVEAAGKKVAIVEGSPRNIKITTPEDLELAEALLKQ  221 (221)
T ss_dssp             HHH---HTHHHSSHHHHHHHTTS-EEEEE--TTG----SHHHHHHHHHHHHH
T ss_pred             HHh---cCCCccCHHHHHHHcCCCEEEEeCCCCceeECCHHHHHHHHHHhcC
Confidence            100   0011234444444 79999999999999999999999999999974

The isoprenoid pathway is a well known target for anti-infective drug development [, ].; GO: 0003824 catalytic activity, 0008299 isoprenoid biosynthetic process; PDB: 1VGW_F 1VGZ_A 1W77_A 2YC3_A 2YCM_A 2YC5_A 1VGU_A 3N9W_B 1I52_A 1H3M_B ....

>PRK05450 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional

Probab=99.77  E-value=1.8e-16  Score=127.87  Aligned_cols=199  Identities=45%  Similarity=0.746  Sum_probs=133.5

Q ss_pred             CCCcEEEEcCcHHHHHHHHHcCCeEEeCCCCCCCchHHHHHHHHHhc-CCCCEEEEecCCCCCCCHHHHHHHHHHHHcC-
Q 027992            9 LFCGLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQAA-   86 (215)
Q Consensus         9 ~~d~ivV~td~~~i~~~~~~~g~~v~~~~~~~~~~~~~i~~~l~~~~-~~~d~v~~~~~d~Pli~~~~i~~~i~~~~~~-   86 (215)
                      .+++|+|+|+.+++.+.+.++|+.++..+....+|++++..++..+. .+.|.++++.||+||+++++++++++.++.+ 
T Consensus        41 ~i~~ivvv~~~~~i~~~~~~~~~~v~~~~~~~~~gt~~~~~~~~~~~~~~~~~vlv~~~D~Pli~~~~l~~li~~~~~~~  120 (245)
T PRK05450         41 GADRVVVATDDERIADAVEAFGGEVVMTSPDHPSGTDRIAEAAAKLGLADDDIVVNVQGDEPLIPPEIIDQVAEPLANPE  120 (245)
T ss_pred             CCCeEEEECCcHHHHHHHHHcCCEEEECCCcCCCchHHHHHHHHhcCCCCCCEEEEecCCCCCCCHHHHHHHHHHHhcCC
Confidence            78999999999999888888898876554455567777766666552 2468899999999999999999999988653 


Q ss_pred             CCceEEeecccC-CCCccCCCCceEEEEcCCCceecccCCCCCCCCCCCCCC-CCCeeEEeeeeeechHHHhhCcCCCCC
Q 027992           87 PDAVFSTAVTSL-KPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNP-QFPYLLHLGIQSYDSNFLKIYPGLHPT  164 (215)
Q Consensus        87 ~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~ip~~~~~~~~q-~~p~~~~~~~~~~~~~~l~~~~~~~~~  164 (215)
                      .+..+.  +.+. ......+|...+++.+++|.+..|.+.++|...+....| ......+.|.|+|....+..+.....+
T Consensus       121 ~~~~~~--~~~~~~~~~~~~~~~~~v~~d~~g~v~~~~e~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~~~~~~~  198 (245)
T PRK05450        121 ADMATL--AVPIHDAEEAFNPNVVKVVLDADGRALYFSRAPIPYGRDAFADSAPTPVYRHIGIYAYRRGFLRRFVSLPPS  198 (245)
T ss_pred             CCeEee--eeecCCHHHhcCcCCCEEEeCCCCcEEEecCCCCCCCCCccccccCccccEEEEEEecCHHHHHHHHhCCCC
Confidence            233322  2222 111123556667767788888878776655332211112 123567888999988776655433222


Q ss_pred             CCCCccchhhhhhhhcCCeeEEEEec-CCCCCCCCHHHHHHHHHHH
Q 027992          165 PLQLEEDLEQLKVLENGYKMKVIKVD-HEAHGVDAPEDVEKIESFM  209 (215)
Q Consensus       165 ~~~~~e~l~~~~~~~~g~~v~~~~~~-~~~idIdt~~Dl~~ae~il  209 (215)
                      ..+..+.+...++++.|.+++.+..+ ...+|||||+|+..|+..+
T Consensus       199 ~~~~~~~~~~~~~~~~g~~v~~~~~~~~~w~~i~~~~dl~~a~~~~  244 (245)
T PRK05450        199 PLEKIESLEQLRALENGYRIHVVVVEEAPSIGVDTPEDLERVRALL  244 (245)
T ss_pred             ccccchhHHHHHHHHCCCceEEEEeCCCCCCCcCCHHHHHHHHHHh
Confidence            22112222222455578899998876 5889999999999998775

>PRK13385 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Provisional

Probab=99.77  E-value=9.9e-18  Score=134.21  Aligned_cols=179  Identities=16%  Similarity=0.252  Sum_probs=117.3

Q ss_pred             ccccCCCCcEEEEcCcHHHH---HHHHHcCCe---E-EeCCCCCCCchHHHHHHHHHhcCCCCEEEEecCCCCCCCHHHH
Q 027992            4 MCHSFLFCGLVVATDDEKIA---ECCQQFGAD---V-IMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEII   76 (215)
Q Consensus         4 a~~~~~~d~ivV~td~~~i~---~~~~~~g~~---v-~~~~~~~~~~~~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i   76 (215)
                      ++++..++.|+|+++++++.   +.+.++|..   + +.....  +...++++|+..+. +.|.+++|+||+||+++++|
T Consensus        40 ~~~~~~~~~ivVv~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~--~r~~sv~~gl~~~~-~~d~vli~~~d~P~i~~~~i  116 (230)
T PRK13385         40 FLADNRCSKIIIVTQAQERKHVQDLMKQLNVADQRVEVVKGGT--ERQESVAAGLDRIG-NEDVILVHDGARPFLTQDII  116 (230)
T ss_pred             HHcCCCCCEEEEEeChhhHHHHHHHHHhcCcCCCceEEcCCCc--hHHHHHHHHHHhcc-CCCeEEEccCCCCCCCHHHH
Confidence            34566799999999876644   455666642   1 111111  23457899998874 45899999999999999999


Q ss_pred             HHHHHHHHcCCCceEEeecccCCCCccCCCCceEEEEcCCCceecccCCCCCCCCCCCCCCCCCeeEEeeeeeechHHHh
Q 027992           77 DGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLK  156 (215)
Q Consensus        77 ~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ip~~~~~~~~q~~p~~~~~~~~~~~~~~l~  156 (215)
                      +++++.+.++ ++.+++  .++.       ++++.+ + +|...    ..+  +|+.       .+..+++|+|+...|.
T Consensus       117 ~~li~~~~~~-~~~~~~--~~~~-------dti~~~-~-~~~~~----~~i--~r~~-------~~~~qtpq~f~~~~l~  171 (230)
T PRK13385        117 DRLLEGVAKY-GAAICA--VEVK-------DTVKRV-K-DKQVI----ETV--DRNE-------LWQGQTPQAFELKILQ  171 (230)
T ss_pred             HHHHHHHhhC-CcEEEE--Eecc-------ceEEEE-c-CCeeE----ecc--CHHH-------HhhhcCCceeeHHHHH
Confidence            9999998754 555553  3443       677765 2 34321    122  2332       3344556888887776


Q ss_pred             hCcCCCCCCCCCccchhhhhhhhcCCeeEEEEecCCCCCCCCHHHHHHHHHHHHh
Q 027992          157 IYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAPEDVEKIESFMRE  211 (215)
Q Consensus       157 ~~~~~~~~~~~~~e~l~~~~~~~~g~~v~~~~~~~~~idIdt~~Dl~~ae~il~~  211 (215)
                      ++........+.... +...+.+.|.++.+++++..+++|||++||++||.+++.
T Consensus       172 ~~~~~~~~~~~~~td-~~~~~~~~g~~v~~v~~~~~n~kItt~eDl~~a~~~l~~  225 (230)
T PRK13385        172 KAHRLASEQQFLGTD-EASLVERSPHPVKLVQGSYYNIKLTTPEDMPLAKAILQG  225 (230)
T ss_pred             HHHHHHHhcCCCcCc-HHHHHHHcCCCEEEEECCcccCcCCCHHHHHHHHHHHhh
Confidence            543221111111111 334455589999999999999999999999999999865

>PF02348 CTP_transf_3: Cytidylyltransferase; InterPro: IPR003329 Synonym(s): CMP-N-acetylneuraminic acid synthetase Acylneuraminate cytidylyltransferase (2

Probab=99.74  E-value=6.6e-18  Score=133.83  Aligned_cols=128  Identities=35%  Similarity=0.564  Sum_probs=92.1

Q ss_pred             ccccccCCCCcEEEEcCcHHHHHHHHHcCCeEEeCCCCCCCchHHHHHHHHHhcC-CCCEEEEecCCCCCCCHHHHHHHH
Q 027992            2 LVMCHSFLFCGLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEK-KYDIVVNIQGDEPLIEPEIIDGVV   80 (215)
Q Consensus         2 ~~a~~~~~~d~ivV~td~~~i~~~~~~~g~~v~~~~~~~~~~~~~i~~~l~~~~~-~~d~v~~~~~d~Pli~~~~i~~~i   80 (215)
                      .+|++++.+|+|||+||+++|.++++++|+.++.|++++++++++...++..... ..++++.++||+||++++.|++++
T Consensus        32 ~~a~~s~~~d~IvVaTd~~~i~~~~~~~g~~v~~~~~~~~~~~~r~~~~~~~~~~~~~~~vv~~~~d~Pll~~~~i~~~i  111 (217)
T PF02348_consen   32 ERAKQSKLIDEIVVATDDEEIDDIAEEYGAKVIFRRGSLADDTDRFIEAIKHFLADDEDIVVRLQGDSPLLDPTSIDRAI  111 (217)
T ss_dssp             HHHHHTTTTSEEEEEESSHHHHHHHHHTTSEEEE--TTSSSHHHHHHHHHHHHTCSTTSEEEEESTTETT--HHHHHHHH
T ss_pred             HHHHhCCCCCeEEEeCCCHHHHHHHHHcCCeeEEcChhhcCCcccHHHHHHHhhhhHHhhccccCCeeeECCHHHHHHHH
Confidence            3578999999999999999999999999999988888999999998888887632 345999999999999999999999


Q ss_pred             HHHHcC-CCceEEeecccCC-CCccCCCCceEEEEcCCCceecccCCCCCCC
Q 027992           81 KALQAA-PDAVFSTAVTSLK-PEDAFDPNRVKCVVDNHGYAIYFSRGLIPYN  130 (215)
Q Consensus        81 ~~~~~~-~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~ip~~  130 (215)
                      +.+.+. .+..... ..+.. ....++++.++.+.+.++...++.+..+|+.
T Consensus       112 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (217)
T PF02348_consen  112 EDIREANEDYISNL-VDPVGSSVEIFNFNPLKVLFDDDGLELYFSEHVIPYI  162 (217)
T ss_dssp             HHHHHSTTSSEEEE-EEEECSHHHHTSTTSTEEEECTTSBEEEEESSESSEC
T ss_pred             HHHhcCchhhhccc-cccccchhhcccccceEEEeccccchhhcccCCCccc
Confidence            999753 3322222 12221 1122344566666666666666666655543

7.7.43 from EC) (CMP-NeuAc synthetase) catalyzes the reaction of CTP and NeuAc to form CMP-NeuAc, which is the nucleotide sugar donor used by sialyltransferases []. The outer membrane lipooligosaccharides of some microorganisms contain terminal sialic acid attached to N-acetyllactosamine and so this modification may be important in pathogenesis.; GO: 0009103 lipopolysaccharide biosynthetic process; PDB: 3K8D_C 1VH1_B 3K8E_C 1QWJ_A 3EWI_A 1VIC_B 3DUV_A 1VH3_C 3TQD_A 2Y6P_C ....

>PLN02728 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase

Probab=99.74  E-value=7e-17  Score=130.64  Aligned_cols=180  Identities=14%  Similarity=0.187  Sum_probs=120.6

Q ss_pred             ccCCCCcEEEEcCcHH---HHHHHHHcCCeEEeCCCCCCCchHHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHH
Q 027992            6 HSFLFCGLVVATDDEK---IAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKA   82 (215)
Q Consensus         6 ~~~~~d~ivV~td~~~---i~~~~~~~g~~v~~~~~~~~~~~~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~   82 (215)
                      +...+++|+|++..+.   +....+.++..+.... .-.+-..+++.|+..+..+.++|++|++++||++++.|+++++.
T Consensus        64 ~~~~i~~IvVV~~~~~~~~~~~~~~~~~~~i~~v~-gg~~r~~SV~~gl~~l~~~~~~VlihDaarP~vs~~~i~~li~~  142 (252)
T PLN02728         64 RMPEVKEIVVVCDPSYRDVFEEAVENIDVPLKFAL-PGKERQDSVFNGLQEVDANSELVCIHDSARPLVTSADIEKVLKD  142 (252)
T ss_pred             hCCCCCeEEEEeCHHHHHHHHHHHHhcCCceEEcC-CCCchHHHHHHHHHhccCCCCEEEEecCcCCCCCHHHHHHHHHH
Confidence            3457899999997543   2344455665442221 11123457899999886567899999999999999999999998


Q ss_pred             HHcCCCceEEeecccCCCCccCCCCceEEEEcCCCceecccCCCCCCCCCCCCCCCCCeeEEeeeeeechHHHhh-CcCC
Q 027992           83 LQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKI-YPGL  161 (215)
Q Consensus        83 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ip~~~~~~~~q~~p~~~~~~~~~~~~~~l~~-~~~~  161 (215)
                      ...+ ++++..  .+..       +++|.+ +.+|.+.   ..  + +|+.       .+..+++|+|+...|.+ +...
T Consensus       143 ~~~~-ga~i~~--~~~~-------dtik~v-~~~~~v~---~t--~-~R~~-------l~~~QTPQ~F~~~~l~~a~~~~  198 (252)
T PLN02728        143 AAVH-GAAVLG--VPVK-------ATIKEA-NSDSFVV---KT--L-DRKR-------LWEMQTPQVIKPELLRRGFELV  198 (252)
T ss_pred             HhhC-CeEEEe--ecch-------hhEEEe-cCCCcee---ec--c-ChHH-------eEEEeCCccchHHHHHHHHHHH
Confidence            8764 566553  4554       788876 4455432   11  1 3433       34566779998877654 3222


Q ss_pred             CCCCCCCccchhhhhhhh-cCCeeEEEEecCCCCCCCCHHHHHHHHHHHHhhc
Q 027992          162 HPTPLQLEEDLEQLKVLE-NGYKMKVIKVDHEAHGVDAPEDVEKIESFMRERN  213 (215)
Q Consensus       162 ~~~~~~~~e~l~~~~~~~-~g~~v~~~~~~~~~idIdt~~Dl~~ae~il~~~~  213 (215)
                      ....   ....+...+++ .|.+|.+++++..|++||||+||.+||.+++.++
T Consensus       199 ~~~~---~~~TDd~~~~~~~g~~V~~v~g~~~N~KITtpeDl~~a~~~l~~~~  248 (252)
T PLN02728        199 EREG---LEVTDDVSIVEALKHPVFITEGSYTNIKVTTPDDMLVAERILNERS  248 (252)
T ss_pred             HhcC---CCcCcHHHHHHHcCCceEEEecCcccccCCCHHHHHHHHHHHhhcc
Confidence            1111   01124444444 7999999999999999999999999999998754

>COG1211 IspD 4-diphosphocytidyl-2-methyl-D-erithritol synthase [Lipid metabolism]

Probab=99.73  E-value=3.9e-17  Score=129.01  Aligned_cols=177  Identities=20%  Similarity=0.248  Sum_probs=118.5

Q ss_pred             cccCCCCcEEEEcCcHHHH---HHHH-HcCCeEEeCCCCCCCchH---HHHHHHHHhcC-CCCEEEEecCCCCCCCHHHH
Q 027992            5 CHSFLFCGLVVATDDEKIA---ECCQ-QFGADVIMTSESCRNGTE---RCNEALQKLEK-KYDIVVNIQGDEPLIEPEII   76 (215)
Q Consensus         5 ~~~~~~d~ivV~td~~~i~---~~~~-~~g~~v~~~~~~~~~~~~---~i~~~l~~~~~-~~d~v~~~~~d~Pli~~~~i   76 (215)
                      +.++.|++|||++..++..   +..+ ..+-.+ .   -..||.+   ++++||..++. +.++|++|++.+||++++.|
T Consensus        43 ~~~~~i~~Ivvv~~~~~~~~~~~~~~~~~~~~v-~---~v~GG~~R~~SV~~gL~~~~~~~~~~VlvHDaaRPf~~~~~i  118 (230)
T COG1211          43 LESPAIDEIVVVVSPEDDPYFEKLPKLSADKRV-E---VVKGGATRQESVYNGLQALSKYDSDWVLVHDAARPFLTPKLI  118 (230)
T ss_pred             HhCcCCCeEEEEEChhhhHHHHHhhhhccCCeE-E---EecCCccHHHHHHHHHHHhhccCCCEEEEeccccCCCCHHHH
Confidence            4567799999999764443   3332 111122 1   1125544   68999999853 68999999999999999999


Q ss_pred             HHHHHHHHcCCCceEEeecccCCCCccCCCCceEEEEcCCCceecccCCCCCCCCCCCCCCCCCeeEEeeeeeechHHHh
Q 027992           77 DGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLK  156 (215)
Q Consensus        77 ~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ip~~~~~~~~q~~p~~~~~~~~~~~~~~l~  156 (215)
                      +++++.. ..+++.+.+  .|+.       +|+|.. +++|.+..     . .+|+..+..++       +|+|+.+.|.
T Consensus       119 ~~li~~~-~~~~aai~a--lpv~-------DTik~~-~~~~~i~~-----t-~~R~~l~~~QT-------PQ~F~~~~L~  174 (230)
T COG1211         119 KRLIELA-DKYGAAILA--LPVT-------DTLKRV-DADGNIVE-----T-VDRSGLWAAQT-------PQAFRLELLK  174 (230)
T ss_pred             HHHHHhh-ccCCcEEEE--eecc-------CcEEEe-cCCCCeee-----c-cChhhhhhhhC-------CccccHHHHH
Confidence            9999444 345666664  4665       898876 44555431     1 24544444444       4888877665


Q ss_pred             hCcCCCCCCCCCccchhhhhhhh-cCCeeEEEEecCCCCCCCCHHHHHHHHHHHHh
Q 027992          157 IYPGLHPTPLQLEEDLEQLKVLE-NGYKMKVIKVDHEAHGVDAPEDVEKIESFMRE  211 (215)
Q Consensus       157 ~~~~~~~~~~~~~e~l~~~~~~~-~g~~v~~~~~~~~~idIdt~~Dl~~ae~il~~  211 (215)
                      +....-  ..+..+.++....++ .|.++.+++++..|++|+||+||++|+.+|+.
T Consensus       175 ~a~~~a--~~~~~~~tDdas~~e~~G~~v~lV~G~~~n~KiTtpeDL~~a~~il~~  228 (230)
T COG1211         175 QALARA--FAEGREITDDASAIEKAGGPVSLVEGSADNFKITTPEDLEIAEAILRR  228 (230)
T ss_pred             HHHHHH--HhcCCCcCCHHHHHHHcCCCeEEEecCcceeEecCHHHHHHHHHHhcC
Confidence            532110  001123345556555 79999999999999999999999999999875

>cd02517 CMP-KDO-Synthetase CMP-KDO synthetase catalyzes the activation of KDO which is an essential component of the lipopolysaccharide

Probab=99.72  E-value=1.9e-15  Score=121.43  Aligned_cols=201  Identities=49%  Similarity=0.836  Sum_probs=126.5

Q ss_pred             ccCCCCcEEEEcCcHHHHHHHHHcCCeEEeCCCCCCCchHHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHHHHc
Q 027992            6 HSFLFCGLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA   85 (215)
Q Consensus         6 ~~~~~d~ivV~td~~~i~~~~~~~g~~v~~~~~~~~~~~~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~~~~   85 (215)
                      ++..+++|+|+|+++.+.+.+..+++.++..+....+|+.++..++..+....|.++++.||+||+++++|+++++.+..
T Consensus        38 ~~~~i~~ivvv~~~~~i~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~~~~~~~d~vlv~~gD~Pli~~~~l~~l~~~~~~  117 (239)
T cd02517          38 KAKGLDEVVVATDDERIADAVESFGGKVVMTSPDHPSGTDRIAEVAEKLDADDDIVVNVQGDEPLIPPEMIDQVVAALKD  117 (239)
T ss_pred             hCCCCCEEEEECCcHHHHHHHHHcCCEEEEcCcccCchhHHHHHHHHhcCCCCCEEEEecCCCCCCCHHHHHHHHHHHHh
Confidence            34479999999999999888888888876555444467777777777664335889999999999999999999998864


Q ss_pred             CCCceEEeecccCCCCc-cCCCCceEEEEcCCCceecccCCCCCCCCCCCCCCCCCeeEEeeeeeechHHHhhCcCCCCC
Q 027992           86 APDAVFSTAVTSLKPED-AFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPT  164 (215)
Q Consensus        86 ~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~ip~~~~~~~~q~~p~~~~~~~~~~~~~~l~~~~~~~~~  164 (215)
                      +.++..++...+..... ...+..++++.+++|.+..|.+.++|..++.  ++......+.+.|+|..+.+..+......
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~--~~~~~~~~~~Giy~~~~~~~~~~~~~~~~  195 (239)
T cd02517         118 DPGVDMATLATPISDEEELFNPNVVKVVLDKDGYALYFSRSPIPYPRDS--SEDFPYYKHIGIYAYRRDFLLRFAALPPS  195 (239)
T ss_pred             CCCCCEEEEEEEcCCHHHccCCCCCEEEECCCCCEEEecCCCCCCCCCC--CCCCceeEEEEEEEECHHHHHHHHhCCCc
Confidence            32333332223331000 0022344555566777666654333322210  12223456788899988776654332111


Q ss_pred             CCCCccchhhhhhhhcCCeeEEEEecCCCCCCCCHHHHHHHHHH
Q 027992          165 PLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAPEDVEKIESF  208 (215)
Q Consensus       165 ~~~~~e~l~~~~~~~~g~~v~~~~~~~~~idIdt~~Dl~~ae~i  208 (215)
                      .++..+.++...++..|.++..+..+...+||+|++|+..||++
T Consensus       196 ~~~~~~~~~~~~~~~~g~~v~~~~~~~~w~~i~t~~dl~~a~~~  239 (239)
T cd02517         196 PLEQIESLEQLRALENGYKIKVVETDHESIGVDTPEDLERVEAL  239 (239)
T ss_pred             hhhhhhhHHHHHHHHCCCceEEEEeCCCCCCCCCHHHHHHHHhC
Confidence            11111111212334468888888765569999999999999864

CMP-KDO Synthetase: 3-Deoxy-D-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) catalyzes the conversion of CTP and 3-deoxy-D-manno-octulosonate into CMP-3-deoxy-D-manno-octulosonate (CMP-KDO) and pyrophosphate. KDO is an essential component of the lipopolysaccharide found in the outer surface of gram-negative eubacteria. It is also a constituent of the capsular polysaccharides of some gram-negative eubacteria. Its presence in the cell wall polysaccharides of green algae and plant were also discovered. However, they have not been found in yeast and animals. The absence of the enzyme in mammalian cells makes it an attractive target molecule for drug design.

>PRK00155 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Reviewed

Probab=99.63  E-value=7.2e-15  Score=117.35  Aligned_cols=178  Identities=16%  Similarity=0.254  Sum_probs=112.7

Q ss_pred             cccCCCCcEEEEcCcHHHHHHHHHcCC---eE-EeCCCCCCCchHHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHH
Q 027992            5 CHSFLFCGLVVATDDEKIAECCQQFGA---DV-IMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVV   80 (215)
Q Consensus         5 ~~~~~~d~ivV~td~~~i~~~~~~~g~---~v-~~~~~~~~~~~~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i   80 (215)
                      ++++.+++|+|+|+++.+..+++.+..   .+ +.....  +-..+++.|+..+. +.|.+++++||+||+++++|++++
T Consensus        42 ~~~~~~~~ivvv~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~sv~~~l~~~~-~~d~vlv~~~D~P~i~~~~i~~li  118 (227)
T PRK00155         42 LAHPRIDEIIVVVPPDDRPDFAELLLAKDPKVTVVAGGA--ERQDSVLNGLQALP-DDDWVLVHDAARPFLTPDDIDRLI  118 (227)
T ss_pred             HcCCCCCEEEEEeChHHHHHHHHHhhccCCceEEeCCcc--hHHHHHHHHHHhCC-CCCEEEEccCccCCCCHHHHHHHH
Confidence            345668999999988776555443321   12 111111  22346888888773 468999999999999999999999


Q ss_pred             HHHHcCCCceEEeecccCCCCccCCCCceEEEEcCCCceecccCCCCCCCCCCCCCCCCCeeEEeeeeeechHHHhhCcC
Q 027992           81 KALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPG  160 (215)
Q Consensus        81 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ip~~~~~~~~q~~p~~~~~~~~~~~~~~l~~~~~  160 (215)
                      +.+..+ ++++.+  .+..       ++++.+ +++|...   +.  + .|+     +  .....++|+|+...+.++..
T Consensus       119 ~~~~~~-~~~~~~--~~~~-------~~~~~v-~~~g~~~---~~--~-~r~-----~--~~~~~~p~~f~~~~l~~~~~  174 (227)
T PRK00155        119 EAAEET-GAAILA--VPVK-------DTIKRS-DDGGGIV---DT--P-DRS-----G--LWAAQTPQGFRIELLREALA  174 (227)
T ss_pred             HHHhhC-CCEEEE--Eecc-------ccEEEE-cCCCcee---ec--C-ChH-----H--heeeeCCccchHHHHHHHHH
Confidence            998764 554443  3432       344444 4455422   21  2 221     1  34556688998877765432


Q ss_pred             CCCCCCCCccc-hhhhhhhh-cCCeeEEEEecCCCCCCCCHHHHHHHHHHHHhh
Q 027992          161 LHPTPLQLEED-LEQLKVLE-NGYKMKVIKVDHEAHGVDAPEDVEKIESFMRER  212 (215)
Q Consensus       161 ~~~~~~~~~e~-l~~~~~~~-~g~~v~~~~~~~~~idIdt~~Dl~~ae~il~~~  212 (215)
                      ....   ...+ ++...+++ .|.++.+++++.+++||||++||++||.+++.+
T Consensus       175 ~~~~---~~~~~~d~~~~~~~~~~~i~~~~~~~~~~~Idt~~Dl~~ae~~~~~~  225 (227)
T PRK00155        175 RALA---EGKTITDDASAVERLGKPVRLVEGRYDNIKITTPEDLALAEAILKRR  225 (227)
T ss_pred             HHHh---cCCCcCcHHHHHHHcCCCeEEEecCcccccCCCHHHHHHHHHHHHhc
Confidence            1100   0111 22233333 688898888888899999999999999999754

>TIGR00453 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase

Probab=99.63  E-value=1.4e-14  Score=114.88  Aligned_cols=174  Identities=17%  Similarity=0.252  Sum_probs=109.3

Q ss_pred             ccCCCCcEEEEcCcHHHHHHHHHcCC--eE-EeCCCCCCCchHHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHH
Q 027992            6 HSFLFCGLVVATDDEKIAECCQQFGA--DV-IMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKA   82 (215)
Q Consensus         6 ~~~~~d~ivV~td~~~i~~~~~~~g~--~v-~~~~~~~~~~~~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~   82 (215)
                      +++.+++|+|+++++....+...++.  .+ +.....  +-..+++.|+..+ .+.|.+++++||+||+++++|+++++.
T Consensus        39 ~~~~~~~ivVv~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~sl~~~l~~~-~~~d~vlv~~~D~P~i~~~~i~~li~~  115 (217)
T TIGR00453        39 AHPAIDEVVVVVSPEDQEFFQKYLVARAVPKIVAGGD--TRQDSVRNGLKAL-KDAEWVLVHDAARPFVPKELLDRLLEA  115 (217)
T ss_pred             cCCCCCEEEEEEChHHHHHHHHHhhcCCcEEEeCCCc--hHHHHHHHHHHhC-CCCCEEEEccCccCCCCHHHHHHHHHH
Confidence            34478999999987755444333321  11 222111  2235688888876 256899999999999999999999999


Q ss_pred             HHcCCCceEEeecccCCCCccCCCCceEEEEcCCCceecccCCCCCCCCCCCCCCCCCeeEEeeeeeechHHHhhCcCC-
Q 027992           83 LQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGL-  161 (215)
Q Consensus        83 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ip~~~~~~~~q~~p~~~~~~~~~~~~~~l~~~~~~-  161 (215)
                      +..+ ++++.+  .+..       ++++.+ +++|....     +. .|+       ....+.++|+|+...+.++... 
T Consensus       116 ~~~~-~~~~~~--~~~~-------~~v~~~-~~~g~~~~-----~~-~r~-------~~~~~~~p~~f~~~~l~~~~~~~  171 (217)
T TIGR00453       116 LRKA-GAAILA--LPVA-------DTLKRV-EADGFIVE-----TV-DRE-------GLWAAQTPQAFRTELLKKALARA  171 (217)
T ss_pred             HhhC-CcEEEe--Eecc-------ceEEEE-cCCCceee-----cC-ChH-------HeEEEeCCCcccHHHHHHHHHHH
Confidence            8653 443332  3432       555544 34553321     11 111       1455677899998877664321 


Q ss_pred             CCCCCCCccchhhhhhhh-cCCeeEEEEecCCCCCCCCHHHHHHHHHHH
Q 027992          162 HPTPLQLEEDLEQLKVLE-NGYKMKVIKVDHEAHGVDAPEDVEKIESFM  209 (215)
Q Consensus       162 ~~~~~~~~e~l~~~~~~~-~g~~v~~~~~~~~~idIdt~~Dl~~ae~il  209 (215)
                      ....++..   +...++. .|.++.+++++..+++|||++|+..||+++
T Consensus       172 ~~~~~~~~---d~~~~~~~~g~~i~~~~~~~~~~~I~~~~Dl~~ae~~~  217 (217)
T TIGR00453       172 KEEGFEIT---DDASAVEKLGGKVALVEGDALNFKITTPEDLALAEALL  217 (217)
T ss_pred             HhcCCCCC---cHHHHHHHcCCCeEEEecCccccccCCHHHHHHHHHhC
Confidence            11111112   2222222 688999999888999999999999999874

Members of this protein family are 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, the IspD protein of the deoxyxylulose pathway of IPP biosynthesis. In about twenty percent of bacterial genomes, this protein occurs as IspDF, a bifunctional fusion protein.

>cd02516 CDP-ME_synthetase CDP-ME synthetase is involved in mevalonate-independent isoprenoid production

Probab=99.44  E-value=2.4e-12  Score=101.95  Aligned_cols=171  Identities=19%  Similarity=0.310  Sum_probs=103.3

Q ss_pred             ccCCCCcEEEEcCcHHHHHHHH--HcC--CeE-EeCCCCCCCchHHHHHHHHHhc-CCCCEEEEecCCCCCCCHHHHHHH
Q 027992            6 HSFLFCGLVVATDDEKIAECCQ--QFG--ADV-IMTSESCRNGTERCNEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGV   79 (215)
Q Consensus         6 ~~~~~d~ivV~td~~~i~~~~~--~~g--~~v-~~~~~~~~~~~~~i~~~l~~~~-~~~d~v~~~~~d~Pli~~~~i~~~   79 (215)
                      +++.+++|+|+|.++.......  .++  ..+ +.....  +...+++.|+..+. .+.|.+++++||+||+++++|+++
T Consensus        40 ~~~~~~~ivVv~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~si~~al~~~~~~~~~~vlv~~~D~P~i~~~~i~~l  117 (218)
T cd02516          40 AHPAIDEIVVVVPPDDIDLAKELAKYGLSKVVKIVEGGA--TRQDSVLNGLKALPDADPDIVLIHDAARPFVSPELIDRL  117 (218)
T ss_pred             cCCCCCEEEEEeChhHHHHHHHHHhcccCCCeEEECCch--HHHHHHHHHHHhcccCCCCEEEEccCcCCCCCHHHHHHH
Confidence            3455899999997765443322  222  122 223222  33457899998874 357899999999999999999999


Q ss_pred             HHHHHcCCCceEEeecccCCCCccCCCCceEEEEcCCCceecccCCCCCCCCCCCCCCCCCeeEEeeeeeechHHHhhCc
Q 027992           80 VKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYP  159 (215)
Q Consensus        80 i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ip~~~~~~~~q~~p~~~~~~~~~~~~~~l~~~~  159 (215)
                      ++.+..+ ++.+.+  .+..       ++++.. +++|....    .+  .|+.       .....++++|+...+.+..
T Consensus       118 i~~~~~~-~~~~~~--~~~~-------~~~~~~-~~~g~~~~----~~--~r~~-------~~~~~~P~~f~~~~~~~~~  173 (218)
T cd02516         118 IDALKEY-GAAIPA--VPVT-------DTIKRV-DDDGVVVE----TL--DREK-------LWAAQTPQAFRLDLLLKAH  173 (218)
T ss_pred             HHHHhhC-CcEEEE--Eecc-------ccEEEe-cCCCceee----cC--ChHH-------hhhhcCCCcccHHHHHHHH
Confidence            9998653 554553  2332       343333 45565431    11  2211       2234555888776665432


Q ss_pred             CCCCCCCCCccch-hhhhhhh-cCCeeEEEEecCCCCCCCCHHHHHHH
Q 027992          160 GLHPTPLQLEEDL-EQLKVLE-NGYKMKVIKVDHEAHGVDAPEDVEKI  205 (215)
Q Consensus       160 ~~~~~~~~~~e~l-~~~~~~~-~g~~v~~~~~~~~~idIdt~~Dl~~a  205 (215)
                      .+...   ..-++ +...++. .|.++.+++++.+++||||++|++.|
T Consensus       174 ~~~~~---~~~~~td~~~~~~~~~~~v~~v~~~~~~~~i~t~~dl~~~  218 (218)
T cd02516         174 RQASE---EGEEFTDDASLVEAAGGKVALVEGSEDNIKITTPEDLALA  218 (218)
T ss_pred             HHHHh---cCCCcCcHHHHHHHcCCCeEEEecCcccccCCCHHHHhhC
Confidence            11100   01112 2233433 67889998888899999999999764

4-diphosphocytidyl-2-methyl-D-erythritol synthase (CDP-ME), also called 2C-methyl-d-erythritol 4-phosphate cytidylyltransferase catalyzes the third step in the alternative (non-mevalonate) pathway of Isopentenyl diphosphate (IPP) biosynthesis: the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate. This mevalonate independent pathway that utilizes pyruvate and glyceraldehydes 3-phosphate as starting materials for production of IPP occurs in a variety of bacteria, archaea and plant cells, but is absent in mammals. Thus, CDP-ME synthetase is an attractive targets for the structure-based design of selective antibacterial, herbicidal and antimalarial drugs.

>PRK09382 ispDF bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein; Provisional

Probab=99.42  E-value=1e-11  Score=105.91  Aligned_cols=166  Identities=20%  Similarity=0.268  Sum_probs=105.0

Q ss_pred             ccCCCCcEEEEcCcHHHHHHHHHc-CCe-E-EeCCCCCCCchHHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHH
Q 027992            6 HSFLFCGLVVATDDEKIAECCQQF-GAD-V-IMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKA   82 (215)
Q Consensus         6 ~~~~~d~ivV~td~~~i~~~~~~~-g~~-v-~~~~~~~~~~~~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~   82 (215)
                      ++..+++|+|++.++......... +.. + +.....  +-..++++|++.+.  .|+|+++++|+||++++.|+++++.
T Consensus        45 ~~~~i~~IvVVv~~~~~~~~~~~~~~~~~v~~v~gG~--~r~~SV~~gL~~l~--~d~VLVhdadrPfv~~e~I~~li~~  120 (378)
T PRK09382         45 SAPAFKEIVVVIHPDDIAYMKKALPEIKFVTLVTGGA--TRQESVRNALEALD--SEYVLIHDAARPFVPKELIDRLIEA  120 (378)
T ss_pred             cCCCCCeEEEEeChHHHHHHHHhcccCCeEEEeCCCc--hHHHHHHHHHHhcC--CCeEEEeeccccCCCHHHHHHHHHH
Confidence            445689999999765543221111 111 1 111111  22346899999883  4899999999999999999999998


Q ss_pred             HHcCCCceEEeecccCCCCccCCCCceEEEEcCCCceecccCCCCCCCCCCCCCCCCCeeEEeeeeeechHHHhhCcCCC
Q 027992           83 LQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLH  162 (215)
Q Consensus        83 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ip~~~~~~~~q~~p~~~~~~~~~~~~~~l~~~~~~~  162 (215)
                      ++.. ++++.+  .+..       ++++...    .       .  .+|+.       .+..+++|.|+...+.+...  
T Consensus       121 ~~~~-~a~i~~--~pv~-------Dtik~~~----~-------t--ldR~~-------l~~~QTPQ~f~~~~l~~a~~--  168 (378)
T PRK09382        121 LDKA-DCVLPA--LPVA-------DTLKRAN----E-------T--VDREG-------LKLIQTPQLSRTKTLKAAAD--  168 (378)
T ss_pred             hhcC-CeEEEE--EEec-------cCcEEee----e-------E--cCccc-------EEEEECCCCCCHHHHHHHHh--
Confidence            8653 666664  3443       5655421    0       0  12221       23346678887765543110  


Q ss_pred             CCCCCCccchhhhhhhh-cCCeeEEEEecCCCCCCCCHHHHHHHHHHHHh
Q 027992          163 PTPLQLEEDLEQLKVLE-NGYKMKVIKVDHEAHGVDAPEDVEKIESFMRE  211 (215)
Q Consensus       163 ~~~~~~~e~l~~~~~~~-~g~~v~~~~~~~~~idIdt~~Dl~~ae~il~~  211 (215)
                       ..   .+..+....++ .|.+|.+++++..++||+||+||.+|+++++.
T Consensus       169 -~~---~~~TDd~sl~~~~G~~V~~v~g~~~n~KITtpeDL~~A~~~l~~  214 (378)
T PRK09382        169 -GR---GDFTDDSSAAEAAGGKVALVEGSEDLHKLTYKEDLKMADLLLSP  214 (378)
T ss_pred             -CC---CCcccHHHHHHHcCCcEEEEECCCcccCCCCHHHHHHHHHHhcc
Confidence             00   11123344443 79999999999999999999999999999865

>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]

Probab=99.28  E-value=3.4e-10  Score=95.54  Aligned_cols=192  Identities=25%  Similarity=0.328  Sum_probs=128.4

Q ss_pred             cCCCCcEEEEc--CcHHHHHHHHHcC-CeEEeCCCCCCCchH-HHHHHHHHhcCCCC-EEEEecCCCCCCCHHHHHHHHH
Q 027992            7 SFLFCGLVVAT--DDEKIAECCQQFG-ADVIMTSESCRNGTE-RCNEALQKLEKKYD-IVVNIQGDEPLIEPEIIDGVVK   81 (215)
Q Consensus         7 ~~~~d~ivV~t--d~~~i~~~~~~~g-~~v~~~~~~~~~~~~-~i~~~l~~~~~~~d-~v~~~~~d~Pli~~~~i~~~i~   81 (215)
                      +-..++|+|+.  ..+.+++.+.+.. +.++...+.  -|+. .+..|+..+..+.+ .++++.||.||+++++|+++++
T Consensus        42 ~l~~~~i~vVvGh~ae~V~~~~~~~~~v~~v~Q~eq--lGTgHAV~~a~~~l~~~~~g~vLVl~GD~PLit~~TL~~L~~  119 (460)
T COG1207          42 ALGPDDIVVVVGHGAEQVREALAERDDVEFVLQEEQ--LGTGHAVLQALPALADDYDGDVLVLYGDVPLITAETLEELLA  119 (460)
T ss_pred             hcCcceEEEEEcCCHHHHHHHhccccCceEEEeccc--CChHHHHHhhhhhhhcCCCCcEEEEeCCcccCCHHHHHHHHH
Confidence            34567777666  4577777766543 666666655  4555 46777777744444 7999999999999999998888


Q ss_pred             HHHcCCCceEEeecccCCCCccCCCCce-EEEEcCCCceecccCCCCCCCCCCCCCCCCCeeEEeeeeeechHHHhhC-c
Q 027992           82 ALQAAPDAVFSTAVTSLKPEDAFDPNRV-KCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIY-P  159 (215)
Q Consensus        82 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~ip~~~~~~~~q~~p~~~~~~~~~~~~~~l~~~-~  159 (215)
                      ..... .+.++++...+     .+|... +++++++|.+.-     |.+.++....|..-...+.+.|+|..+.|.++ .
T Consensus       120 ~~~~~-~~~~tvLt~~~-----~dP~GYGRIvr~~~g~V~~-----IVE~KDA~~eek~I~eiNtGiy~f~~~~L~~~L~  188 (460)
T COG1207         120 AHPAH-GAAATVLTAEL-----DDPTGYGRIVRDGNGEVTA-----IVEEKDASEEEKQIKEINTGIYAFDGAALLRALP  188 (460)
T ss_pred             hhhhc-CCceEEEEEEc-----CCCCCcceEEEcCCCcEEE-----EEEcCCCCHHHhcCcEEeeeEEEEcHHHHHHHHH
Confidence            87532 33344443444     355554 667777776542     22344432233333577888999988766654 3


Q ss_pred             CCCCCCCCCccc-hh-hhhhhh-cCCeeEEEEec--CCCCCCCCHHHHHHHHHHHHhh
Q 027992          160 GLHPTPLQLEED-LE-QLKVLE-NGYKMKVIKVD--HEAHGVDAPEDVEKIESFMRER  212 (215)
Q Consensus       160 ~~~~~~~~~~e~-l~-~~~~~~-~g~~v~~~~~~--~~~idIdt~~Dl~~ae~il~~~  212 (215)
                      .+. +..++.|| |. -..++. .|.++..+..+  .+...|++.-.|..||+++++|
T Consensus       189 ~l~-nnNaqgEYYLTDvI~i~~~~g~~V~a~~~~d~~E~~GVN~R~qLa~~e~~~q~r  245 (460)
T COG1207         189 KLS-NNNAQGEYYLTDVIAIARNEGEKVRAVHVDDEEEVLGVNDRVQLAEAERIMQRR  245 (460)
T ss_pred             Hhc-cccccCcEeHHHHHHHHHhCCCeEEEEecCchHHhcCcCcHHHHHHHHHHHHHH
Confidence            443 33466776 64 444443 68899988864  6999999999999999999875

>COG2068 Uncharacterized MobA-related protein [General function prediction only]

Probab=99.24  E-value=9.2e-11  Score=90.22  Aligned_cols=79  Identities=22%  Similarity=0.308  Sum_probs=60.5

Q ss_pred             cCCCCcEEEEcCcHHHH---HHHHHcCCeEEeCCCCCCCchH-HHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHH
Q 027992            7 SFLFCGLVVATDDEKIA---ECCQQFGADVIMTSESCRNGTE-RCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKA   82 (215)
Q Consensus         7 ~~~~d~ivV~td~~~i~---~~~~~~g~~v~~~~~~~~~~~~-~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~   82 (215)
                      +..+++|||+|-.+...   ......++.++.++ +++.|++ |++.|+.+...+.|+++++.||+|++++++++++++.
T Consensus        43 ~a~~~~vivV~g~~~~~~~~a~~~~~~~~~v~np-d~~~Gls~Sl~ag~~a~~~~~~~v~~~lgDmP~V~~~t~~rl~~~  121 (199)
T COG2068          43 SAGLDRVIVVTGHRVAEAVEALLAQLGVTVVVNP-DYAQGLSTSLKAGLRAADAEGDGVVLMLGDMPQVTPATVRRLIAA  121 (199)
T ss_pred             hcCCCeEEEEeCcchhhHHHhhhccCCeEEEeCc-chhhhHhHHHHHHHHhcccCCCeEEEEeCCCCCCCHHHHHHHHHh
Confidence            36689999999764222   33333566666555 7777876 7899999885444799999999999999999999999


Q ss_pred             HHcC
Q 027992           83 LQAA   86 (215)
Q Consensus        83 ~~~~   86 (215)
                      +...
T Consensus       122 ~~~~  125 (199)
T COG2068         122 FRAR  125 (199)
T ss_pred             cccc
Confidence            9764

>TIGR03552 F420_cofC 2-phospho-L-lactate guanylyltransferase CofC

Probab=99.19  E-value=5.7e-10  Score=86.99  Aligned_cols=79  Identities=22%  Similarity=0.310  Sum_probs=61.9

Q ss_pred             CCcEEEEcCcHHHHHHHHHcCCeEEeCCCCCCCchHHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHHHHcCCCc
Q 027992           10 FCGLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDA   89 (215)
Q Consensus        10 ~d~ivV~td~~~i~~~~~~~g~~v~~~~~~~~~~~~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~~~~~~~~   89 (215)
                      +++|+|+++++++.+.+..+|+.++.++..  |-.+++.+|++++..+.+.++++.+|+||+++++|+++++.+.. .+.
T Consensus        45 ~~~vvvv~~~~~~~~~~~~~~v~~i~~~~~--G~~~si~~al~~~~~~~~~vlv~~~D~P~l~~~~i~~l~~~~~~-~~~  121 (195)
T TIGR03552        45 AGAVLVVSPDPALLEAARNLGAPVLRDPGP--GLNNALNAALAEAREPGGAVLILMADLPLLTPRELKRLLAAATE-GDV  121 (195)
T ss_pred             CCCEEEECCCHHHHHHHHhcCCEEEecCCC--CHHHHHHHHHHHhhccCCeEEEEeCCCCCCCHHHHHHHHHhccc-CCE
Confidence            578999999888888888889888765432  33457899988775456799999999999999999999998753 344


Q ss_pred             eE
Q 027992           90 VF   91 (215)
Q Consensus        90 ~i   91 (215)
                      ++
T Consensus       122 vi  123 (195)
T TIGR03552       122 VI  123 (195)
T ss_pred             EE
Confidence            33

Members of this protein family are the CofC enzyme of coenzyme F420 biosynthesis.

>cd02518 GT2_SpsF SpsF is a glycosyltrnasferase implicated in the synthesis of the spore coat

Probab=99.13  E-value=3.6e-09  Score=84.77  Aligned_cols=77  Identities=34%  Similarity=0.503  Sum_probs=57.4

Q ss_pred             cccCCCCcEEEEcCc----HHHHHHHHHcCCeEEeCCCCCCCchHHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHH
Q 027992            5 CHSFLFCGLVVATDD----EKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVV   80 (215)
Q Consensus         5 ~~~~~~d~ivV~td~----~~i~~~~~~~g~~v~~~~~~~~~~~~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i   80 (215)
                      +++..+++|+|+|+.    +.+.+.+...|+.++.++..  ++..+...++..  .+.|.+++++||+||+++++|++++
T Consensus        35 ~~~~~~~~ivVv~~~~~~~~~i~~~~~~~~v~~v~~~~~--~~l~~~~~~~~~--~~~d~vli~~~D~P~i~~~~i~~li  110 (233)
T cd02518          35 KRSKLIDEIVIATSTNEEDDPLEALAKKLGVKVFRGSEE--DVLGRYYQAAEE--YNADVVVRITGDCPLIDPEIIDAVI  110 (233)
T ss_pred             HhCCCCCeEEEECCCCcccHHHHHHHHHcCCeEEECCch--hHHHHHHHHHHH--cCCCEEEEeCCCCCCCCHHHHHHHH
Confidence            344558999999964    46777777788888766643  344444444433  2578999999999999999999999


Q ss_pred             HHHHc
Q 027992           81 KALQA   85 (215)
Q Consensus        81 ~~~~~   85 (215)
                      +.+..
T Consensus       111 ~~~~~  115 (233)
T cd02518         111 RLFLK  115 (233)
T ss_pred             HHHHh
Confidence            98865

Spore coat polysaccharide biosynthesis protein F (spsF) is a glycosyltransferase implicated in the synthesis of the spore coat in a variety of bacteria challenged by stress as starvation. The spsF gene is expressed in the late stage of coat development responsible for a terminal step in coat formation that involves the glycosylation of the coat. SpsF gene mutation resulted in spores that appeared normal. But, the spores tended to aggregate and had abnormal adsorption properties, indicating a surface alteration.

>COG1861 SpsF Spore coat polysaccharide biosynthesis protein F, CMP-KDO synthetase homolog [Cell envelope biogenesis, outer membrane]

Probab=99.11  E-value=5.6e-10  Score=86.60  Aligned_cols=84  Identities=30%  Similarity=0.461  Sum_probs=67.5

Q ss_pred             ccccCCCCcEEEEcC----cHHHHHHHHHcCCeEEeCCCCCCCchHHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHH
Q 027992            4 MCHSFLFCGLVVATD----DEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGV   79 (215)
Q Consensus         4 a~~~~~~d~ivV~td----~~~i~~~~~~~g~~v~~~~~~~~~~~~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~   79 (215)
                      .++++.+|+|||+|.    +..+.+.+.++|+.|+..+++  .-..|+..++++.  +.|.|+.+.||+||++|+.++.+
T Consensus        38 vrks~~~d~ivvATS~~~~d~~l~~~~~~~G~~vfrGs~~--dVL~Rf~~a~~a~--~~~~VVRvTGD~P~~dp~l~d~~  113 (241)
T COG1861          38 VRKSKDLDKIVVATSDKEEDDALEEVCRSHGFYVFRGSEE--DVLQRFIIAIKAY--SADVVVRVTGDNPFLDPELVDAA  113 (241)
T ss_pred             HhccccccceEEEecCCcchhHHHHHHHHcCeeEecCCHH--HHHHHHHHHHHhc--CCCeEEEeeCCCCCCCHHHHHHH
Confidence            457888999999994    355778899999999876544  4556888888887  56799999999999999999999


Q ss_pred             HHHHHcCCCceEE
Q 027992           80 VKALQAAPDAVFS   92 (215)
Q Consensus        80 i~~~~~~~~~~i~   92 (215)
                      +..+.+. ++.++
T Consensus       114 v~~~l~~-gaDY~  125 (241)
T COG1861         114 VDRHLEK-GADYV  125 (241)
T ss_pred             HHHHHhc-CCccc
Confidence            9998642 34444

>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.05  E-value=1.5e-08  Score=88.86  Aligned_cols=195  Identities=18%  Similarity=0.244  Sum_probs=111.1

Q ss_pred             cccCCCCcEEEEcC--cHHHHHHHHHcCCeEEeCCCCCCCch-HHHHHHHHHhcC-CCCEEEEecCCCCCCCHHHHHHHH
Q 027992            5 CHSFLFCGLVVATD--DEKIAECCQQFGADVIMTSESCRNGT-ERCNEALQKLEK-KYDIVVNIQGDEPLIEPEIIDGVV   80 (215)
Q Consensus         5 ~~~~~~d~ivV~td--~~~i~~~~~~~g~~v~~~~~~~~~~~-~~i~~~l~~~~~-~~d~v~~~~~d~Pli~~~~i~~~i   80 (215)
                      ++...+++|+|++.  .+.+.+.....++.++..+..  .|+ .+++.++..+.. ..|.++++.||+||+++++++.++
T Consensus        43 l~~~~~~~iivv~~~~~~~i~~~~~~~~~~~v~~~~~--~Gt~~al~~a~~~l~~~~~d~vlv~~gD~P~i~~~~i~~li  120 (456)
T PRK14356         43 LRPLFGDNVWTVVGHRADMVRAAFPDEDARFVLQEQQ--LGTGHALQCAWPSLTAAGLDRVLVVNGDTPLVTTDTIDDFL  120 (456)
T ss_pred             HHhcCCCcEEEEECCCHHHHHHhccccCceEEEcCCC--CCcHHHHHHHHHHHhhcCCCcEEEEeCCcccCCHHHHHHHH
Confidence            34445788888874  366666555556666554432  343 367777777642 358899999999999999999999


Q ss_pred             HHHHcCCCceEEeecccCCCCccCCCCceEEEEcCCCceecccCCCCCCCCCCCCCCCCCeeEEeeeeeechHHHhhC-c
Q 027992           81 KALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIY-P  159 (215)
Q Consensus        81 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ip~~~~~~~~q~~p~~~~~~~~~~~~~~l~~~-~  159 (215)
                      +.++ +.+..+..  .+..     +|....++..++|.+.-+.+..   ..+.............+.|.|+.+.+..+ .
T Consensus       121 ~~~~-~~~~~l~~--~~~~-----~~~~~g~v~~~~g~V~~~~ek~---~~~~~~~~~~~~~~~~GiY~f~~~~l~~ll~  189 (456)
T PRK14356        121 KEAA-GADLAFMT--LTLP-----DPGAYGRVVRRNGHVAAIVEAK---DYDEALHGPETGEVNAGIYYLRLDAVESLLP  189 (456)
T ss_pred             HHHh-cCCEEEEE--EEcC-----CCCCceEEEEcCCeEEEEEECC---CCChHHhhhhcCeEEEEEEEEEHHHHHHHHH
Confidence            8865 33433332  2321     2233322323566654332111   00000001112355678899988765432 2


Q ss_pred             CCCCCCCCCccchh-hhh-hhhcCCeeEEEEec--CCCCCCCCHHHHHHHHHHHHhh
Q 027992          160 GLHPTPLQLEEDLE-QLK-VLENGYKMKVIKVD--HEAHGVDAPEDVEKIESFMRER  212 (215)
Q Consensus       160 ~~~~~~~~~~e~l~-~~~-~~~~g~~v~~~~~~--~~~idIdt~~Dl~~ae~il~~~  212 (215)
                      .+.........++. ... ++..|.++..+...  ...++|+|++||..|+.++..+
T Consensus       190 ~l~~~~~~~e~~ltd~i~~~~~~g~~v~~~~~~~~~~~~~I~tp~dl~~a~~~l~~~  246 (456)
T PRK14356        190 RLTNANKSGEYYITDLVGLAVAEGMNVLGVNCGEDPNLLGVNTPAELVRSEELLRAR  246 (456)
T ss_pred             hccCcccCCcEEHHHHHHHHHHCCCeEEEEEcCCcCeEecCcCHHHHHHHHHHHHHH
Confidence            22111101111222 222 23367888888753  4679999999999999998653

>cd02540 GT2_GlmU_N_bac N-terminal domain of bacterial GlmU

Probab=99.02  E-value=2.7e-08  Score=79.14  Aligned_cols=181  Identities=21%  Similarity=0.315  Sum_probs=106.2

Q ss_pred             CCCCcEEEEc--CcHHHHHHHHHcCCeEEeCCCCCCCchHHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHHHHc
Q 027992            8 FLFCGLVVAT--DDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA   85 (215)
Q Consensus         8 ~~~d~ivV~t--d~~~i~~~~~~~g~~v~~~~~~~~~~~~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~~~~   85 (215)
                      ..+++|+|++  +.+.+.+.+..+++.++.++.. .|-..++++|+..+....|.+++++||+||+++..+.++++.+.+
T Consensus        39 ~~i~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~-~g~~~ai~~a~~~~~~~~~~vli~~~D~p~~~~~~i~~l~~~~~~  117 (229)
T cd02540          39 LGPDRIVVVVGHGAEQVKKALANPNVEFVLQEEQ-LGTGHAVKQALPALKDFEGDVLVLYGDVPLITPETLQRLLEAHRE  117 (229)
T ss_pred             CCCCeEEEEECCCHHHHHHHhCCCCcEEEECCCC-CCCHHHHHHHHHhhccCCCeEEEEeCCccccCHHHHHHHHHHHHh
Confidence            3477877776  4577888887778887665433 233447888988874336889999999999999999999998865


Q ss_pred             C-CCceEEeecccCCCCccCCCCce-EEEEcCCCceecccCCCCCCCCCCCCCCCCCeeEEeeeeeechHHHhh-CcCCC
Q 027992           86 A-PDAVFSTAVTSLKPEDAFDPNRV-KCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKI-YPGLH  162 (215)
Q Consensus        86 ~-~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~ip~~~~~~~~q~~p~~~~~~~~~~~~~~l~~-~~~~~  162 (215)
                      + .++.+.  ..+..     +|... .+..+++|.+..+.+..     ...++|..-.....+.|+|+.+.+.+ +....
T Consensus       118 ~~~~~~~~--~~~~~-----~p~~~~~~~~~~~~~v~~~~ek~-----~~~~~~~~~~~~~~giy~~~~~~~~~~l~~~~  185 (229)
T cd02540         118 AGADVTVL--TAELE-----DPTGYGRIIRDGNGKVLRIVEEK-----DATEEEKAIREVNAGIYAFDAEFLFEALPKLT  185 (229)
T ss_pred             cCCcEEEE--EEEcC-----CCCCccEEEEcCCCCEEEEEECC-----CCChHHHhhceEEeEEEEEEHHHHHHHHHHcc
Confidence            3 344333  23332     22211 22335556543322111     00112211134466789998765433 22221


Q ss_pred             CCCCCCcc-ch-hhhh-hhhcCCeeEEEEec--CCCCCCCCHHHH
Q 027992          163 PTPLQLEE-DL-EQLK-VLENGYKMKVIKVD--HEAHGVDAPEDV  202 (215)
Q Consensus       163 ~~~~~~~e-~l-~~~~-~~~~g~~v~~~~~~--~~~idIdt~~Dl  202 (215)
                      ... ...+ ++ +... .+..|.++..++.+  .+-+.|+|+.|+
T Consensus       186 ~~~-~~~~~~~~d~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~  229 (229)
T cd02540         186 NNN-AQGEYYLTDIIALAVADGLKVAAVLADDEEEVLGVNDRVQL  229 (229)
T ss_pred             ccc-CCCcEEHHHHHHHHHHCCCEEEEEEcCCcceEecCCChHhC
Confidence            110 0111 12 2233 33368889888864  799999999985

The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively.

>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.00  E-value=4.2e-08  Score=85.89  Aligned_cols=191  Identities=17%  Similarity=0.225  Sum_probs=106.4

Q ss_pred             ccCCCCcEEEEcC--cHHHHHHHHHcCCe--EEeCCCCCCCchHHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHH
Q 027992            6 HSFLFCGLVVATD--DEKIAECCQQFGAD--VIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVK   81 (215)
Q Consensus         6 ~~~~~d~ivV~td--~~~i~~~~~~~g~~--v~~~~~~~~~~~~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~   81 (215)
                      ....+++|+|++.  .+++.+.+..++..  ++..... .+...+++.++..+....|.++++.||+||++++.++++++
T Consensus        44 ~~~gi~~ivvv~~~~~~~i~~~~~~~~~~~~~~~~~~~-~G~~~sl~~a~~~l~~~~~~~lv~~~D~P~i~~~~l~~l~~  122 (446)
T PRK14353         44 ASLGPSRVAVVVGPGAEAVAAAAAKIAPDAEIFVQKER-LGTAHAVLAAREALAGGYGDVLVLYGDTPLITAETLARLRE  122 (446)
T ss_pred             HhCCCCcEEEEECCCHHHHHHHhhccCCCceEEEcCCC-CCcHHHHHHHHHHHhccCCCEEEEeCCcccCCHHHHHHHHH
Confidence            3345889888884  46677776665433  3333222 23345677787776433467889999999999999999998


Q ss_pred             HHHcCCCceEEeecccCCCCccCCCCce-EEEEcCCCceecccCCCCCCCCCCCCCCCCCeeEEeeeeeechHHHhh-Cc
Q 027992           82 ALQAAPDAVFSTAVTSLKPEDAFDPNRV-KCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKI-YP  159 (215)
Q Consensus        82 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~ip~~~~~~~~q~~p~~~~~~~~~~~~~~l~~-~~  159 (215)
                      .+.+..+..+.+  .+..     ++..+ .+.. ++|.+..+.+.+-+     ...+..-.....+.|.|+...+.. +.
T Consensus       123 ~~~~~~~~~i~~--~~~~-----~~~~~g~~~~-~~g~v~~~~ek~~~-----~~~~~~~~~~~~Giy~~~~~~l~~~l~  189 (446)
T PRK14353        123 RLADGADVVVLG--FRAA-----DPTGYGRLIV-KGGRLVAIVEEKDA-----SDEERAITLCNSGVMAADGADALALLD  189 (446)
T ss_pred             hHhcCCcEEEEE--EEeC-----CCCcceEEEE-CCCeEEEEEECCCC-----ChHHhhceEEEEEEEEEEHHHHHHHHH
Confidence            665444544432  2322     11111 2223 45554433221100     000000124456778887654432 22


Q ss_pred             CCCCCCCCCcc-ch-hhhh-hhhcCCeeEEEEecC-CCCCCCCHHHHHHHHHHHHh
Q 027992          160 GLHPTPLQLEE-DL-EQLK-VLENGYKMKVIKVDH-EAHGVDAPEDVEKIESFMRE  211 (215)
Q Consensus       160 ~~~~~~~~~~e-~l-~~~~-~~~~g~~v~~~~~~~-~~idIdt~~Dl~~ae~il~~  211 (215)
                      ...... ...+ ++ +... .++.|.++..+..+. .-.||||++|+..|+.+++.
T Consensus       190 ~~~~~~-~~~~~~~~d~~~~l~~~g~~v~~~~~~~~~~~~I~t~~dl~~a~~~~~~  244 (446)
T PRK14353        190 RVGNDN-AKGEYYLTDIVAIARAEGLRVAVVEAPEDEVRGINSRAELAEAEAVWQA  244 (446)
T ss_pred             hhcccC-CCCcEeHHHHHHHHHHCCCeEEEEecChhhcccCCCHHHHHHHHHHHHH
Confidence            211110 0111 22 2223 334788898888754 45699999999999988764

>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase

Probab=98.99  E-value=5.2e-08  Score=85.32  Aligned_cols=189  Identities=18%  Similarity=0.267  Sum_probs=110.6

Q ss_pred             cCCCCcEEEEc--CcHHHHHHHHHcCCeEEeCCCCCCCchHHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHHHH
Q 027992            7 SFLFCGLVVAT--DDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQ   84 (215)
Q Consensus         7 ~~~~d~ivV~t--d~~~i~~~~~~~g~~v~~~~~~~~~~~~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~~~   84 (215)
                      ...+++|+|++  +.+.+.+.+.++++.++..+..+ +...++++++..+. +.|.++++.||+||+++..++++++.+.
T Consensus        40 ~~g~~~iiiv~~~~~~~i~~~~~~~~i~~~~~~~~~-G~~~ai~~a~~~l~-~~~~~lv~~~D~p~i~~~~~~~l~~~~~  117 (451)
T TIGR01173        40 ALGPQKIHVVYGHGAEQVRKALANRDVNWVLQAEQL-GTGHAVLQALPFLP-DDGDVLVLYGDVPLISAETLERLLEAHR  117 (451)
T ss_pred             hCCCCeEEEEECCCHHHHHHHhcCCCcEEEEcCCCC-chHHHHHHHHHhcC-CCCcEEEEECCcCCcCHHHHHHHHHHHh
Confidence            34567877776  45778888877787776554442 33347888888874 2368999999999999999999999886


Q ss_pred             cCCCceEEeecccCCCCccCCCC-ceEEEEcCCCceecccCCCCCCCCCCCCCCCCCeeEEeeeeeechHHHhh-CcCCC
Q 027992           85 AAPDAVFSTAVTSLKPEDAFDPN-RVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKI-YPGLH  162 (215)
Q Consensus        85 ~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~ip~~~~~~~~q~~p~~~~~~~~~~~~~~l~~-~~~~~  162 (215)
                      +...++++   .+..     +|. ...+..+++|.+..+.+.+     ....+|+.......+.|+|+.+.+.+ +....
T Consensus       118 ~~~~~~~~---~~~~-----~~~~~g~v~~d~~g~v~~~~ek~-----~~~~~~~~~~~~~~G~y~~~~~~l~~~l~~~~  184 (451)
T TIGR01173       118 QNGITLLT---AKLP-----DPTGYGRIIRENDGKVTAIVEDK-----DANAEQKAIKEINTGVYVFDGAALKRWLPKLS  184 (451)
T ss_pred             hCCEEEEE---EecC-----CCCCCCEEEEcCCCCEEEEEEcC-----CCChHHhcCcEEEEEEEEEeHHHHHHHHHhcc
Confidence            53222222   2321     111 1122335556554332211     00112221234556779998876543 22211


Q ss_pred             CCCCCCccc-hh-hhh-hhhcCCeeEEEEec--CCCCCCCCHHHHHHHHHHHHh
Q 027992          163 PTPLQLEED-LE-QLK-VLENGYKMKVIKVD--HEAHGVDAPEDVEKIESFMRE  211 (215)
Q Consensus       163 ~~~~~~~e~-l~-~~~-~~~~g~~v~~~~~~--~~~idIdt~~Dl~~ae~il~~  211 (215)
                      ... ...|. +. ... ++..|.++..++.+  ...++|+|++|+..++.++..
T Consensus       185 ~~~-~~~e~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~i~t~~dl~~~~~~l~~  237 (451)
T TIGR01173       185 NNN-AQGEYYLTDVIALAVADGETVRAVQVDDSDEVLGVNDRLQLAQLERILQR  237 (451)
T ss_pred             ccc-ccCcEeHHHHHHHHHHCCCeEEEEEcCChhheecCCCHHHHHHHHHHHHH
Confidence            111 11111 22 222 33467788888754  469999999999999887754

This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.

>cd06915 NTP_transferase_WcbM_like WcbM_like is a subfamily of nucleotidyl transferases

Probab=98.96  E-value=5.5e-08  Score=76.84  Aligned_cols=173  Identities=21%  Similarity=0.240  Sum_probs=103.7

Q ss_pred             CCCCcEEEEcC--cHHHHHHHHH---cCCeE-EeCCCCCCCch-HHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHH
Q 027992            8 FLFCGLVVATD--DEKIAECCQQ---FGADV-IMTSESCRNGT-ERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVV   80 (215)
Q Consensus         8 ~~~d~ivV~td--~~~i~~~~~~---~g~~v-~~~~~~~~~~~-~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i   80 (215)
                      ..+++|+|+|+  ++.+.+.+..   +|+.+ +.++.+. .|+ .++..+++.+  ..+.++++.||+|+  +.++.+++
T Consensus        42 ~g~~~v~vv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~G~~~~l~~a~~~~--~~~~~lv~~~D~~~--~~~~~~~l  116 (223)
T cd06915          42 QGISRIVLSVGYLAEQIEEYFGDGYRGGIRIYYVIEPEP-LGTGGAIKNALPKL--PEDQFLVLNGDTYF--DVDLLALL  116 (223)
T ss_pred             CCCCEEEEEcccCHHHHHHHHcCccccCceEEEEECCCC-CcchHHHHHHHhhc--CCCCEEEEECCccc--CCCHHHHH
Confidence            35899999996  5667766653   35554 3343333 344 4678888877  34679999999987  45788999


Q ss_pred             HHHHc-CCCceEEeecccCCCCccCCCCceEEEEcCCCceecccCCCCCCCCCCCCCCCCCeeEEeeeeeechHHHhhCc
Q 027992           81 KALQA-APDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYP  159 (215)
Q Consensus        81 ~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ip~~~~~~~~q~~p~~~~~~~~~~~~~~l~~~~  159 (215)
                      +.+++ +.++.+.+  .+...    .+...++..+++|.+..+.+.+         ++.-......+.|+|+.+++....
T Consensus       117 ~~~~~~~~~~~~~~--~~~~~----~~~~~~v~~d~~~~v~~~~ek~---------~~~~~~~~~~Giy~~~~~~l~~~~  181 (223)
T cd06915         117 AALRASGADATMAL--RRVPD----ASRYGNVTVDGDGRVIAFVEKG---------PGAAPGLINGGVYLLRKEILAEIP  181 (223)
T ss_pred             HHHHhCCCcEEEEE--EECCC----CCcceeEEECCCCeEEEEEeCC---------CCCCCCcEEEEEEEECHHHHhhCC
Confidence            98864 34444443  23211    1122233345666665443211         111124557788999988876543


Q ss_pred             CCCCCCCCCccchhhhh-hhhcCCeeEEEEecCCCCCCCCHHHHHHHH
Q 027992          160 GLHPTPLQLEEDLEQLK-VLENGYKMKVIKVDHEAHGVDAPEDVEKIE  206 (215)
Q Consensus       160 ~~~~~~~~~~e~l~~~~-~~~~g~~v~~~~~~~~~idIdt~~Dl~~ae  206 (215)
                      ... ..   .+ .+-.+ ++..| ++..++.+...+||||++||..|+
T Consensus       182 ~~~-~~---~~-~~~~~~l~~~~-~v~~~~~~~~~~dI~t~~dl~~a~  223 (223)
T cd06915         182 ADA-FS---LE-ADVLPALVKRG-RLYGFEVDGYFIDIGIPEDYARAQ  223 (223)
T ss_pred             ccC-CC---hH-HHHHHHHHhcC-cEEEEecCCeEEecCCHHHHHhhC
Confidence            221 10   00 01222 23345 788888777789999999998873

WcbM protein of Burkholderia mallei is involved in the biosynthesis, export or translocation of capsule. It is a subfamily of nucleotidyl transferases that transfer nucleotides onto phosphosugars.

>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=98.92  E-value=1.2e-07  Score=82.53  Aligned_cols=180  Identities=23%  Similarity=0.329  Sum_probs=101.3

Q ss_pred             CCcEEEEc--CcHHHHHHHHHc--CCeEEeCCCCCCCchH-HHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHHHH
Q 027992           10 FCGLVVAT--DDEKIAECCQQF--GADVIMTSESCRNGTE-RCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQ   84 (215)
Q Consensus        10 ~d~ivV~t--d~~~i~~~~~~~--g~~v~~~~~~~~~~~~-~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~~~   84 (215)
                      +++|+|++  +++.+.+.+.++  +++++..+.....|+. .++.    +....|.+++++||+||++++.++++++   
T Consensus        44 ~~~i~Ivv~~~~~~i~~~~~~~~~~v~~~~~~~~~~~gt~~al~~----~~~~~d~vlv~~gD~p~~~~~~l~~l~~---  116 (430)
T PRK14359         44 SDDVHVVLHHQKERIKEAVLEYFPGVIFHTQDLENYPGTGGALMG----IEPKHERVLILNGDMPLVEKDELEKLLE---  116 (430)
T ss_pred             CCcEEEEECCCHHHHHHHHHhcCCceEEEEecCccCCCcHHHHhh----cccCCCeEEEEECCccCCCHHHHHHHHh---
Confidence            46666666  567788877765  4455433322223333 2332    2224588999999999999999887653   


Q ss_pred             cCCCceEEeecccCCCCccCCCCce-EEEEcCCCceecccCCCCCCCCCCCCCCCCC-eeEEeeeeeechHHHhhCc-CC
Q 027992           85 AAPDAVFSTAVTSLKPEDAFDPNRV-KCVVDNHGYAIYFSRGLIPYNKSGKVNPQFP-YLLHLGIQSYDSNFLKIYP-GL  161 (215)
Q Consensus        85 ~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~ip~~~~~~~~q~~p-~~~~~~~~~~~~~~l~~~~-~~  161 (215)
                      .+.+..+++  .+..     +|... ++.. ++|.+..+.+..      ..++++.+ ...+.+.|+|+.+++..+. .+
T Consensus       117 ~~~~~~v~~--~~~~-----~~~~~g~v~~-d~g~v~~i~e~~------~~~~~~~~~~~~~~Giyif~~~~l~~~~~~~  182 (430)
T PRK14359        117 NDADIVMSV--FHLA-----DPKGYGRVVI-ENGQVKKIVEQK------DANEEELKIKSVNAGVYLFDRKLLEEYLPLL  182 (430)
T ss_pred             CCCCEEEEE--EEcC-----CCccCcEEEE-cCCeEEEEEECC------CCCcccccceEEEeEEEEEEHHHHHHHHHhc
Confidence            234544443  2332     12222 2222 356554332211      11233333 3446778999988776542 21


Q ss_pred             CCCCCCCcc-ch-hhh-hhhhcCCeeEEEEec-CCCCCCCCHHHHHHHHHHHHh
Q 027992          162 HPTPLQLEE-DL-EQL-KVLENGYKMKVIKVD-HEAHGVDAPEDVEKIESFMRE  211 (215)
Q Consensus       162 ~~~~~~~~e-~l-~~~-~~~~~g~~v~~~~~~-~~~idIdt~~Dl~~ae~il~~  211 (215)
                      .... +..| ++ +.. .+++.|.++..++.+ ....||||++||..|+.+|..
T Consensus       183 ~~~~-~~~e~~l~d~i~~l~~~g~~v~~~~~~~~~w~dI~t~~dl~~a~~~l~~  235 (430)
T PRK14359        183 KNQN-AQKEYYLTDIIALAIEKGETIKAVFVDEENFMGVNSKFELAKAEEIMQE  235 (430)
T ss_pred             Cccc-ccCceehhhHHHHHHHcCCeEEEEEcCCCEEeCCCCHHHHHHHHHHHHH
Confidence            1110 1112 22 222 244468889988875 467899999999999998865

>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=98.91  E-value=1.6e-07  Score=82.50  Aligned_cols=190  Identities=16%  Similarity=0.191  Sum_probs=105.2

Q ss_pred             cCCCCcEEEEc--CcHHHHHHHHHcCCeEEeCCCCCCCchHHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHHHH
Q 027992            7 SFLFCGLVVAT--DDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQ   84 (215)
Q Consensus         7 ~~~~d~ivV~t--d~~~i~~~~~~~g~~v~~~~~~~~~~~~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~~~   84 (215)
                      ...+++++|++  +++++.+.... +..++..+.. .+...++++++..+....|.++++++|+||+++++++++++.++
T Consensus        42 ~~gi~~iivvv~~~~~~i~~~~~~-~~~~~~~~~~-~g~~~al~~a~~~l~~~~d~vlv~~~D~p~i~~~~l~~li~~~~  119 (458)
T PRK14354         42 KAGIDKIVTVVGHGAEEVKEVLGD-RSEFALQEEQ-LGTGHAVMQAEEFLADKEGTTLVICGDTPLITAETLKNLIDFHE  119 (458)
T ss_pred             hCCCCeEEEEeCCCHHHHHHHhcC-CcEEEEcCCC-CCHHHHHHHHHHHhcccCCeEEEEECCccccCHHHHHHHHHHHH
Confidence            34578887766  34556555432 3444433322 23334678888877432478999999999999999999999886


Q ss_pred             cCCCceEEeecccCCCCccCCCCce-EEEEcCCCceecccCCCCCCCCCCCCCCCC--CeeEEeeeeeechHHHhh-CcC
Q 027992           85 AAPDAVFSTAVTSLKPEDAFDPNRV-KCVVDNHGYAIYFSRGLIPYNKSGKVNPQF--PYLLHLGIQSYDSNFLKI-YPG  160 (215)
Q Consensus        85 ~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~ip~~~~~~~~q~~--p~~~~~~~~~~~~~~l~~-~~~  160 (215)
                      +. ++..++...+..     +|... .+..+++|.+.-+-+.+ +      .+++.  ......+.|+|+.+.+.. +..
T Consensus       120 ~~-~~~~t~~~~~~~-----~~~~~g~v~~d~~~~V~~~~ek~-~------~~~~~~~~~~~~~Giy~f~~~~l~~~l~~  186 (458)
T PRK14354        120 EH-KAAATILTAIAE-----NPTGYGRIIRNENGEVEKIVEQK-D------ATEEEKQIKEINTGTYCFDNKALFEALKK  186 (458)
T ss_pred             hc-CCceEEEEEEcC-----CCCCceEEEEcCCCCEEEEEECC-C------CChHHhcCcEEEEEEEEEEHHHHHHHHHH
Confidence            42 222222222221     12211 22235555543221110 0      11111  134566779998765433 222


Q ss_pred             CCCCCCCCccch-hhhh-hhhcCCeeEEEEec--CCCCCCCCHHHHHHHHHHHHh
Q 027992          161 LHPTPLQLEEDL-EQLK-VLENGYKMKVIKVD--HEAHGVDAPEDVEKIESFMRE  211 (215)
Q Consensus       161 ~~~~~~~~~e~l-~~~~-~~~~g~~v~~~~~~--~~~idIdt~~Dl~~ae~il~~  211 (215)
                      ..........++ +... ++..|.++..++.+  ...++|||++||..|+.++..
T Consensus       187 ~~~~~~~~~~~~~d~~~~l~~~g~~v~~~~~~g~~~~i~i~~~~Dl~~a~~ll~~  241 (458)
T PRK14354        187 ISNDNAQGEYYLTDVIEILKNEGEKVGAYQTEDFEESLGVNDRVALAEAEKVMRR  241 (458)
T ss_pred             hCccccCCcEeHHHHHHHHHHCCCeEEEEecCCcceEEccCCHHHHHHHHHHHHH
Confidence            211100001112 2222 33467888888764  689999999999999988753

>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=98.82  E-value=3.4e-07  Score=80.22  Aligned_cols=188  Identities=15%  Similarity=0.226  Sum_probs=104.3

Q ss_pred             CCCCcEEEEcC--cHHHHHHHHHc-CCeEEeCCCCCCCch-HHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHHH
Q 027992            8 FLFCGLVVATD--DEKIAECCQQF-GADVIMTSESCRNGT-ERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKAL   83 (215)
Q Consensus         8 ~~~d~ivV~td--~~~i~~~~~~~-g~~v~~~~~~~~~~~-~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~~   83 (215)
                      ..+++++|++.  .+.+.+.+.++ ++.++..+ .. .|+ .+++.++..+....+.++++.+|+||+++++++++++.+
T Consensus        42 ~g~~~iivvv~~~~~~i~~~~~~~~~i~~v~~~-~~-~G~~~sv~~~~~~l~~~~~~vlV~~~D~P~i~~~~l~~ll~~~  119 (450)
T PRK14360         42 LKPDRRLVIVGHQAEEVEQSLAHLPGLEFVEQQ-PQ-LGTGHAVQQLLPVLKGFEGDLLVLNGDVPLLRPETLEALLNTH  119 (450)
T ss_pred             CCCCeEEEEECCCHHHHHHHhcccCCeEEEEeC-Cc-CCcHHHHHHHHHHhhccCCcEEEEeCCccccCHHHHHHHHHHH
Confidence            45667766663  45666666654 35555433 22 343 467777777643235688899999999999999999988


Q ss_pred             HcCCCceEEeecccCCCCccCCCCc-eEEEEcCCCceecccCCCCCCCCCCCCCCCCCeeEEeeeeeechHHHhhC-cCC
Q 027992           84 QAAPDAVFSTAVTSLKPEDAFDPNR-VKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIY-PGL  161 (215)
Q Consensus        84 ~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~ip~~~~~~~~q~~p~~~~~~~~~~~~~~l~~~-~~~  161 (215)
                      ++. ++.+++...+..     +|.. .++..+++|.+..+.+.+-+.     ..|........+.|+|+.+.+.++ ..+
T Consensus       120 ~~~-~~~~~~~~~~~~-----~~~~~g~~~~d~~g~v~~~~ek~~~~-----~~~~~~~~~~~Giy~f~~~~l~~~~~~~  188 (450)
T PRK14360        120 RSS-NADVTLLTARLP-----NPKGYGRVFCDGNNLVEQIVEDRDCT-----PAQRQNNRINAGIYCFNWPALAEVLPKL  188 (450)
T ss_pred             Hhc-CCcEEEEEEecC-----CCCCccEEEECCCCCEEEEEECCCCC-----hhHhcCcEEEEEEEEEEHHHHHHHHhhc
Confidence            753 333443223322     2221 123345667665442221000     011111355677899987666543 222


Q ss_pred             CCCCCCCccchh-hhhhhhcCCeeEEEE--ecCCCCCCCCHHHHHHHHHHHHh
Q 027992          162 HPTPLQLEEDLE-QLKVLENGYKMKVIK--VDHEAHGVDAPEDVEKIESFMRE  211 (215)
Q Consensus       162 ~~~~~~~~e~l~-~~~~~~~g~~v~~~~--~~~~~idIdt~~Dl~~ae~il~~  211 (215)
                      .........++. ..+.+.   .+..+.  ....+++|||++|++.++.++..
T Consensus       189 ~~~~~~~e~~~td~i~~~~---~~~~~~v~~~~~~~~i~~~~dl~~~~~~l~~  238 (450)
T PRK14360        189 SSNNDQKEYYLTDTVSLLD---PVMAVEVEDYQEINGINDRKQLAQCEEILQN  238 (450)
T ss_pred             cccccCCceeHHHHHHHHh---hceEEecCCHHHhhcCCCHHHHHHHHHHHHH
Confidence            211111122232 233332   222222  34688999999999999999864

>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=98.81  E-value=6.7e-07  Score=78.67  Aligned_cols=192  Identities=20%  Similarity=0.208  Sum_probs=111.2

Q ss_pred             cCCCCcEEEEcCc--HHHHHHHHHc-CCeEEeCCCCCCCch-HHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHH
Q 027992            7 SFLFCGLVVATDD--EKIAECCQQF-GADVIMTSESCRNGT-ERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKA   82 (215)
Q Consensus         7 ~~~~d~ivV~td~--~~i~~~~~~~-g~~v~~~~~~~~~~~-~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~   82 (215)
                      ...+++|+|++..  +++.+.+.+. ++.++..+..  .|+ .++..++..+....|.++++.||+||+++.+++++++.
T Consensus        43 ~~gi~~iiiv~~~~~~~i~~~~~~~~~i~~~~~~~~--~Gt~~al~~a~~~l~~~~~~vlv~~gD~p~~~~~~i~~l~~~  120 (459)
T PRK14355         43 EAGAGRIVLVVGHQAEKVREHFAGDGDVSFALQEEQ--LGTGHAVACAAPALDGFSGTVLILCGDVPLLRAETLQGMLAA  120 (459)
T ss_pred             hcCCCeEEEEECCCHHHHHHHhccCCceEEEecCCC--CCHHHHHHHHHHHhhccCCcEEEEECCccCcCHHHHHHHHHH
Confidence            3467888888743  5676666543 3344334333  344 46778887774335789999999999999999999998


Q ss_pred             HHcCCCceEEeecccCCCCccCCCCc-eEEEEcCCCceecccCCCCCCCCCCCCCCCCCeeEEeeeeeechHHHhh-CcC
Q 027992           83 LQAAPDAVFSTAVTSLKPEDAFDPNR-VKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKI-YPG  160 (215)
Q Consensus        83 ~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~ip~~~~~~~~q~~p~~~~~~~~~~~~~~l~~-~~~  160 (215)
                      +... ++.+++...+..     +|.. ..+..+++|.+..+.+.+ +.    ..+|..-.....+.|+|..+++.+ ...
T Consensus       121 ~~~~-~~~~~v~~~~~~-----~~~~~g~v~~d~~g~v~~~~ek~-~~----~~~~~~~~~~~~Giy~~~~~~l~~~l~~  189 (459)
T PRK14355        121 HRAT-GAAVTVLTARLE-----NPFGYGRIVRDADGRVLRIVEEK-DA----TPEERSIREVNSGIYCVEAAFLFDAIGR  189 (459)
T ss_pred             HHhc-CCcEEEEEEEcC-----CCCcCCEEEEcCCCCEEEEEEcC-CC----ChhHhhccEEEEEEEEEeHHHHHHHHHH
Confidence            8653 455554433332     2221 122345566554332211 10    112221234567789998775433 222


Q ss_pred             CCCCCCCCccch-hhhh-hhhcCCeeEEEEecC--CCCCCCCHHHHHHHHHHHHh
Q 027992          161 LHPTPLQLEEDL-EQLK-VLENGYKMKVIKVDH--EAHGVDAPEDVEKIESFMRE  211 (215)
Q Consensus       161 ~~~~~~~~~e~l-~~~~-~~~~g~~v~~~~~~~--~~idIdt~~Dl~~ae~il~~  211 (215)
                      +.........++ +... ++..|.++..++.+.  .-++|+|++|+..|..++..
T Consensus       190 ~~~~~~~~e~~~~d~i~~l~~~g~~v~~~~~~~~~~~~~i~~~~~~~~a~~~l~~  244 (459)
T PRK14355        190 LGNDNAQGEYYLTDIVAMAAAEGLRCLAFPVADPDEIMGVNDRAQLAEAARVLRR  244 (459)
T ss_pred             cCccccCCceeHHHHHHHHHHCCCeEEEEEcCCHHHhcCCCCHHHHHHHHHHHHH
Confidence            211100011112 2223 334678888887643  48899999999999887754

>PRK00317 mobA molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed

Probab=98.73  E-value=5.3e-07  Score=70.11  Aligned_cols=74  Identities=19%  Similarity=0.253  Sum_probs=53.5

Q ss_pred             CCCCcEEEEcCcHHHHHHHHHcCCeEEeCCCC-CCCchHHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHHHHc
Q 027992            8 FLFCGLVVATDDEKIAECCQQFGADVIMTSES-CRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA   85 (215)
Q Consensus         8 ~~~d~ivV~td~~~i~~~~~~~g~~v~~~~~~-~~~~~~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~~~~   85 (215)
                      ..+++|+|++.... . ....+++.++..+.. ..+...+++.|+...  +.|.++++.||+||++++.|+++++.+.+
T Consensus        42 ~~~~~i~vv~~~~~-~-~~~~~~~~~v~~~~~~~~g~~~~i~~~l~~~--~~~~vlv~~~D~P~i~~~~i~~l~~~~~~  116 (193)
T PRK00317         42 PQVDEIVINANRNL-A-RYAAFGLPVIPDSLADFPGPLAGILAGLKQA--RTEWVLVVPCDTPFIPPDLVARLAQAAGK  116 (193)
T ss_pred             hhCCEEEEECCCCh-H-HHHhcCCcEEeCCCCCCCCCHHHHHHHHHhc--CCCeEEEEcCCcCCCCHHHHHHHHHhhhc
Confidence            56889999986432 1 234567776544322 123456788888865  56899999999999999999999998754

>PRK02726 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional

Probab=98.68  E-value=5.2e-07  Score=70.71  Aligned_cols=75  Identities=11%  Similarity=0.102  Sum_probs=53.8

Q ss_pred             CCCcEEEEcCcHHHHHHHHHcCCeEEeCCCCCCCchHHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHHHHc
Q 027992            9 LFCGLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA   85 (215)
Q Consensus         9 ~~d~ivV~td~~~i~~~~~~~g~~v~~~~~~~~~~~~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~~~~   85 (215)
                      .+++|+|++...+........++.++..+....|...++..|+..+  +.|.++++.||+||++++.|+.+++.+..
T Consensus        46 ~~~~ivvv~~~~~~~~~~~~~~~~~i~~~~~~~G~~~si~~~l~~~--~~~~vlv~~~D~P~i~~~~i~~l~~~~~~  120 (200)
T PRK02726         46 CADEVYIITPWPERYQSLLPPGCHWLREPPPSQGPLVAFAQGLPQI--KTEWVLLLACDLPRLTVDVLQEWLQQLEN  120 (200)
T ss_pred             hCCEEEEECCCHHHHHhhccCCCeEecCCCCCCChHHHHHHHHHhC--CCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Confidence            4689999997544332222235665544433234456889999887  35899999999999999999999998754

>COG2266 GTP:adenosylcobinamide-phosphate guanylyltransferase [Coenzyme metabolism]

Probab=98.64  E-value=1.7e-06  Score=65.20  Aligned_cols=71  Identities=28%  Similarity=0.399  Sum_probs=61.0

Q ss_pred             CCCcEEEEcC--cHHHHHHHHHcCCeEEeCCCCCCCchHHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHHHH
Q 027992            9 LFCGLVVATD--DEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQ   84 (215)
Q Consensus         9 ~~d~ivV~td--~~~i~~~~~~~g~~v~~~~~~~~~~~~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~~~   84 (215)
                      .+++|+|+++  .+.+++++...|++++..|.+  |-..-++++++.+..   =++++.+|.||+.+.+|+.+++.+.
T Consensus        40 ~~d~i~v~isp~tp~t~~~~~~~gv~vi~tpG~--GYv~Dl~~al~~l~~---P~lvvsaDLp~l~~~~i~~vi~~~~  112 (177)
T COG2266          40 IVDEIIVAISPHTPKTKEYLESVGVKVIETPGE--GYVEDLRFALESLGT---PILVVSADLPFLNPSIIDSVIDAAA  112 (177)
T ss_pred             hcCcEEEEeCCCCHhHHHHHHhcCceEEEcCCC--ChHHHHHHHHHhcCC---ceEEEecccccCCHHHHHHHHHHHh
Confidence            6899999994  588999999999999987755  455678899998843   4899999999999999999999986

>PF01983 CofC: Guanylyl transferase CofC like; InterPro: IPR002835 Coenzyme F 420 is a hydride carrier cofactor functioning in methanogenesis

Probab=98.57  E-value=4.6e-08  Score=77.13  Aligned_cols=69  Identities=29%  Similarity=0.430  Sum_probs=38.6

Q ss_pred             CCcEEEEcCcHHHHHHHH-HcCCeEEeCCCCCCCchH-HHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHHHH
Q 027992           10 FCGLVVATDDEKIAECCQ-QFGADVIMTSESCRNGTE-RCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQ   84 (215)
Q Consensus        10 ~d~ivV~td~~~i~~~~~-~~g~~v~~~~~~~~~~~~-~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~~~   84 (215)
                      ++ |+|+|.++++.+.+. .+|+.++.-+   ..|.+ .+..|+...  ..+-++++++|-|++++++|+.+++...
T Consensus        44 v~-v~vVs~d~~v~~~a~~~~g~~vl~d~---~~gLN~Al~~a~~~~--~~~~vlvl~aDLPll~~~dl~~~l~~~~  114 (217)
T PF01983_consen   44 VD-VVVVSRDPEVAALARARLGAEVLPDP---GRGLNAALNAALAAA--GDDPVLVLPADLPLLTPEDLDALLAAAG  114 (217)
T ss_dssp             -S-EEEEES--S-TTTTT---SSEEEE------S-HHHHHHHHHH-H----S-EEEE-S--TT--HHHHHHHCT-SS
T ss_pred             cC-eEEeccchhhhhhhhhccCCeEecCC---CCCHHHHHHHHHhcc--CCCceEEeecCCccCCHHHHHHHHhccC
Confidence            67 999999999888776 7899987544   24554 456663333  5678999999999999999999988753

One step in the biosynthesis of coenzyme F 420 involves the coupling of 2-phospho- l-lactate (LP) to 7,8-didemethyl-8-hydroxy-5-deazaflavin, the F 420 chromophore. This condensation requires an initial activation of 2-phospho- l-lactate through a pyrophosphate linkage to GMP. MJ0887 from Methanocaldococcus jannaschii has domain similarity with other known nucleotidyl transferases and was demonstrated to catalyse the formation of lactyl-2-diphospho-5'-guanosine from LP and GTP, which is the third step in the biosynthesis of coenzyme F 420 []. ; GO: 0016779 nucleotidyltransferase activity; PDB: 2I5E_B.

>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=98.57  E-value=8.5e-06  Score=72.21  Aligned_cols=190  Identities=16%  Similarity=0.204  Sum_probs=108.9

Q ss_pred             ccCCCCcEEEEcCc--HHHHHHHHHcCCeEEeCCCCCCCch-HHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHH
Q 027992            6 HSFLFCGLVVATDD--EKIAECCQQFGADVIMTSESCRNGT-ERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKA   82 (215)
Q Consensus         6 ~~~~~d~ivV~td~--~~i~~~~~~~g~~v~~~~~~~~~~~-~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~   82 (215)
                      ....+++|+|++..  +.+.+.+...++.++..+ . ..|+ .+++.++..+....+.++++.||+||+++.+++++++.
T Consensus        46 ~~~gi~~ivvv~~~~~~~i~~~~~~~~i~~v~~~-~-~~Gt~~al~~~~~~l~~~~~~~lV~~gD~P~i~~~~l~~ll~~  123 (481)
T PRK14358         46 RDLGARKIVVVTGHGAEQVEAALQGSGVAFARQE-Q-QLGTGDAFLSGASALTEGDADILVLYGDTPLLRPDTLRALVAD  123 (481)
T ss_pred             HhCCCCeEEEEeCCCHHHHHHHhccCCcEEecCC-C-cCCcHHHHHHHHHHhhCCCCcEEEEeCCeeccCHHHHHHHHHH
Confidence            33468999999854  667666665666665433 2 2344 46778887774222337889999999999999999998


Q ss_pred             HHcCCCceEEeecccCCCCccCCCCceEEEEcCCCceecccCCCCCCCCCCCCCCCCCeeEEeeeeeechH---HHhhCc
Q 027992           83 LQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSN---FLKIYP  159 (215)
Q Consensus        83 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ip~~~~~~~~q~~p~~~~~~~~~~~~~---~l~~~~  159 (215)
                      ++++ ++.+++...+..   ...... .+..+++|.+.-|.+.+-+     ...+..-...+.+.|+|..+   ++....
T Consensus       124 ~~~~-~~~~ti~~~~~~---~~~~yG-~v~~d~~g~v~~~~Ek~~~-----~~~~~~~~~~n~Giyi~~~~~~~~~~~i~  193 (481)
T PRK14358        124 HRAQ-GSAMTILTGELP---DATGYG-RIVRGADGAVERIVEQKDA-----TDAEKAIGEFNSGVYVFDARAPELARRIG  193 (481)
T ss_pred             HHhc-CCeEEEEEEEcC---CCCCce-EEEECCCCCEEEEEECCCC-----ChhHhhCCeEEEEEEEEchHHHHHHHhcC
Confidence            8653 344443333321   111122 2334566665544332100     00010012457788999843   343322


Q ss_pred             CCCCCCCCCccc-h-hhhh-hhhcCCeeEEEEec--CCCCCCCCHHHHHHHHHHHHh
Q 027992          160 GLHPTPLQLEED-L-EQLK-VLENGYKMKVIKVD--HEAHGVDAPEDVEKIESFMRE  211 (215)
Q Consensus       160 ~~~~~~~~~~e~-l-~~~~-~~~~g~~v~~~~~~--~~~idIdt~~Dl~~ae~il~~  211 (215)
                      .   .. ...|+ + +... ++..|.++..++..  .+.+.+.+..++..++.+++.
T Consensus       194 ~---~~-~~ge~~l~d~i~~~~~~g~~i~~~~~~~~~~~i~~~~~~~l~~~~~~l~~  246 (481)
T PRK14358        194 N---DN-KAGEYYLTDLLGLYRAGGAQVRAFKLSDPDEVLGANDRAGLAQLEATLRR  246 (481)
T ss_pred             C---Cc-cCCeEEHHHHHHHHHHCCCeEEEEecCCHHHhcCCCCHHHHHHHHHHHHH
Confidence            1   10 11121 3 2223 33467788887753  689999999988888877754

>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=98.53  E-value=8.6e-06  Score=72.18  Aligned_cols=189  Identities=21%  Similarity=0.256  Sum_probs=101.8

Q ss_pred             CCCCcEEEEcC--cHHHHHHHHHcCCeE-EeCCCCCCCch-HHHHHHHHHhcC-CCCEEEEecCCCCCCCHHHHHHHHHH
Q 027992            8 FLFCGLVVATD--DEKIAECCQQFGADV-IMTSESCRNGT-ERCNEALQKLEK-KYDIVVNIQGDEPLIEPEIIDGVVKA   82 (215)
Q Consensus         8 ~~~d~ivV~td--~~~i~~~~~~~g~~v-~~~~~~~~~~~-~~i~~~l~~~~~-~~d~v~~~~~d~Pli~~~~i~~~i~~   82 (215)
                      ..+++++|++.  .+.+.+.....+..+ +..+.. ..|+ .+++.|+..+.. ..+.++++.||+||+++.+++++++.
T Consensus        45 ~g~~~iivvv~~~~~~i~~~~~~~~~~~~~~~~~~-~~Gt~~si~~al~~l~~~~~~~vlV~~gD~P~~~~~~l~~li~~  123 (482)
T PRK14352         45 LAPQHLVVVVGHDRERVAPAVAELAPEVDIAVQDE-QPGTGHAVQCALEALPADFDGTVVVTAGDVPLLDGETLADLVAT  123 (482)
T ss_pred             cCCCcEEEEECCCHHHHHHHhhccCCccEEEeCCC-CCCcHHHHHHHHHHhccCCCCeEEEEeCCeeccCHHHHHHHHHH
Confidence            45778887773  456666655443222 222222 2344 468888887742 24679999999999999999999998


Q ss_pred             HHcCCCceEEeecccCCCCccCCCCce-EEEEcCCCceecccCCCCCCCCCCCCCCCC-CeeEEeeeeeechHHHhhC-c
Q 027992           83 LQAAPDAVFSTAVTSLKPEDAFDPNRV-KCVVDNHGYAIYFSRGLIPYNKSGKVNPQF-PYLLHLGIQSYDSNFLKIY-P  159 (215)
Q Consensus        83 ~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~ip~~~~~~~~q~~-p~~~~~~~~~~~~~~l~~~-~  159 (215)
                      +++. ++.+++...+..     +|... .+..+++|.+..+.+.+-      ...+++ -...+.+.|+|..+.|... .
T Consensus       124 ~~~~-~~~~~v~~~~~~-----~p~~yg~~~~~~~g~V~~~~EKp~------~~~~~~~~~~~~~Giy~f~~~~l~~~~~  191 (482)
T PRK14352        124 HTAE-GNAVTVLTTTLD-----DPTGYGRILRDQDGEVTAIVEQKD------ATPSQRAIREVNSGVYAFDAAVLRSALA  191 (482)
T ss_pred             HHhc-CCeEEEEEeecC-----CCCCCCEEEECCCCCEEEEEECCC------CCHHHhhcceEEEEEEEEEHHHHHHHHH
Confidence            8653 344444333332     22221 233355666543322110      011111 1235677899998776542 2


Q ss_pred             CCCCCCCCCcc-ch-hhhh-hhhcCCeeEEEEecCCCCCCCCH--HHHHHHHHHHH
Q 027992          160 GLHPTPLQLEE-DL-EQLK-VLENGYKMKVIKVDHEAHGVDAP--EDVEKIESFMR  210 (215)
Q Consensus       160 ~~~~~~~~~~e-~l-~~~~-~~~~g~~v~~~~~~~~~idIdt~--~Dl~~ae~il~  210 (215)
                      .+.... ...| ++ +... ++..|.++..++.+....|+.++  .|+.+|+.++.
T Consensus       192 ~~~~~~-~~~e~~l~d~i~~l~~~g~~V~~~~~~g~w~~~g~~~~~~~~~a~~~~~  246 (482)
T PRK14352        192 RLSSDN-AQGELYLTDVLAIAREAGHRVGAHHADDSAEVAGVNDRVQLAALGAELN  246 (482)
T ss_pred             hhCccc-cCCcEeHHHHHHHHHHCCCeEEEEecCCcceEEcCCCHHHHHHHHHHHH
Confidence            222111 0111 22 3333 33467889888765444455444  45565556553

>cd04189 G1P_TT_long G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase

Probab=98.51  E-value=1.4e-05  Score=63.89  Aligned_cols=180  Identities=19%  Similarity=0.293  Sum_probs=99.5

Q ss_pred             CCCCcEEEEcC--cHHHHHHHHH---cCCeE-EeCCCCCCCch-HHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHH
Q 027992            8 FLFCGLVVATD--DEKIAECCQQ---FGADV-IMTSESCRNGT-ERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVV   80 (215)
Q Consensus         8 ~~~d~ivV~td--~~~i~~~~~~---~g~~v-~~~~~~~~~~~-~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i   80 (215)
                      ..+++|+|++.  .+.+.+...+   ++..+ +..... ..|+ .+++.|+..+.  .+.++++.||..+ + ..+.+++
T Consensus        44 ~~~~~i~vv~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~g~~~sl~~a~~~i~--~~~~li~~~D~~~-~-~~~~~~~  118 (236)
T cd04189          44 AGIEDIGIVVGPTGEEIKEALGDGSRFGVRITYILQEE-PLGLAHAVLAARDFLG--DEPFVVYLGDNLI-Q-EGISPLV  118 (236)
T ss_pred             CCCCEEEEEcCCCHHHHHHHhcchhhcCCeEEEEECCC-CCChHHHHHHHHHhcC--CCCEEEEECCeec-C-cCHHHHH
Confidence            46889998884  4666666543   45555 222222 2344 46788887763  3457778999986 3 4577888


Q ss_pred             HHHHc-CCCceEEeecccCCCCccCCCCceEEE-EcCCCceecccCCCCCCCCCCCCCCCCCeeEEeeeeeechHHHhhC
Q 027992           81 KALQA-APDAVFSTAVTSLKPEDAFDPNRVKCV-VDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIY  158 (215)
Q Consensus        81 ~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~ip~~~~~~~~q~~p~~~~~~~~~~~~~~l~~~  158 (215)
                      +.+.. +.+..+.  +.+..     +|....++ .+ +|.+.-+.+.  |       ..........+.|.|....+..+
T Consensus       119 ~~~~~~~~~~~~~--~~~~~-----~~~~~g~~~~d-~~~v~~~~ek--~-------~~~~~~~~~~Giy~~~~~~~~~l  181 (236)
T cd04189         119 RDFLEEDADASIL--LAEVE-----DPRRFGVAVVD-DGRIVRLVEK--P-------KEPPSNLALVGVYAFTPAIFDAI  181 (236)
T ss_pred             HHHHhcCCceEEE--EEECC-----CcccceEEEEc-CCeEEEEEEC--C-------CCCCCCEEEEEEEEeCHHHHHHH
Confidence            87754 3343333  23332     12222122 23 3444322111  1       01112345677888887665443


Q ss_pred             cCCCCCCCCCcc-ch-hhhh-hhhcCCeeEEEEecCCCCCCCCHHHHHHHHHHHHh
Q 027992          159 PGLHPTPLQLEE-DL-EQLK-VLENGYKMKVIKVDHEAHGVDAPEDVEKIESFMRE  211 (215)
Q Consensus       159 ~~~~~~~~~~~e-~l-~~~~-~~~~g~~v~~~~~~~~~idIdt~~Dl~~ae~il~~  211 (215)
                      .......  ..+ ++ +... ++..|.++..++.+...++|+|++|+..|+..+-.
T Consensus       182 ~~~~~~~--~~~~~~~d~~~~~i~~g~~v~~~~~~~~~~~i~t~~dl~~a~~~~l~  235 (236)
T cd04189         182 SRLKPSW--RGELEITDAIQWLIDRGRRVGYSIVTGWWKDTGTPEDLLEANRLLLD  235 (236)
T ss_pred             HhcCCCC--CCeEEHHHHHHHHHHcCCcEEEEEcCceEEeCCCHHHHHHHHHHHHh
Confidence            2211110  111 12 2222 33467888888876668999999999999987643

This family is the long form of Glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.The long from enzymes also have a left-handed parallel helix domain at the c-terminus, whereas, th eshort form enzymes do not have this domain. The homotetrameric, feedback inhibited short form is found in

>PF12804 NTP_transf_3: MobA-like NTP transferase domain; PDB: 3FWW_A 2XME_D 2XMH_C 2DPW_A 2WAW_A 2OI5_B 1HV9_B 1FWY_A 2OI6_A 2OI7_B

Probab=98.46  E-value=2.2e-06  Score=64.32  Aligned_cols=76  Identities=25%  Similarity=0.421  Sum_probs=61.5

Q ss_pred             CCCcEEEEcCcHHHHHHHHHcCCeEEeCCCCCCCchHHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHHHHc
Q 027992            9 LFCGLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA   85 (215)
Q Consensus         9 ~~d~ivV~td~~~i~~~~~~~g~~v~~~~~~~~~~~~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~~~~   85 (215)
                      .+++|+|++..+++.+.+..++++++..+..-.|...++..|+..+. ..+.++++.+|+||+++++++++++.+.+
T Consensus        38 ~~~~Ivvv~~~~~~~~~~~~~~~~~v~~~~~~~G~~~sl~~a~~~~~-~~~~vlv~~~D~p~~~~~~l~~l~~~~~~  113 (160)
T PF12804_consen   38 GVDDIVVVTGEEEIYEYLERYGIKVVVDPEPGQGPLASLLAALSQLP-SSEPVLVLPCDQPFLSPELLRRLLEALEK  113 (160)
T ss_dssp             TESEEEEEESTHHHHHHHTTTTSEEEE-STSSCSHHHHHHHHHHTST-TSSEEEEEETTETTS-HHHHHHHHHHHHH
T ss_pred             CCceEEEecChHHHHHHHhccCceEEEeccccCChHHHHHHHHHhcc-cCCCcEEEeCCccccCHHHHHHHHHHHhc
Confidence            47999999999888888888899987665332344557889988874 67899999999999999999999999975

...

>COG1920 Predicted nucleotidyltransferase, CobY/MobA/RfbA family [General function prediction only]

Probab=98.45  E-value=3.4e-06  Score=64.26  Aligned_cols=74  Identities=24%  Similarity=0.383  Sum_probs=54.5

Q ss_pred             CCcEEEEcCcHHHHHHHHHcCCeEEeCCCCCCCch-HHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHHHHcCCC
Q 027992           10 FCGLVVATDDEKIAECCQQFGADVIMTSESCRNGT-ERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPD   88 (215)
Q Consensus        10 ~d~ivV~td~~~i~~~~~~~g~~v~~~~~~~~~~~-~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~~~~~~~   88 (215)
                      +.+|.|+|.++++...+.+.  ++..-     ++. .++..++..++.+ +-++++++|-|++++++|.++++..+. .|
T Consensus        45 ~~~i~Vvtpde~~~~~a~~~--~vl~d-----~dLN~Ai~aa~~~~~~p-~~v~vvmaDLPLl~~~~i~~~~~~~~d-~d  115 (210)
T COG1920          45 LGEITVVTPDEEVLVPATKL--EVLAD-----PDLNTAINAALDEIPLP-SEVIVVMADLPLLSPEHIERALSAAKD-AD  115 (210)
T ss_pred             cCCceEEcCChHhhhhcccc--eeeec-----cchHHHHHHHHhhCCCC-cceEEEecccccCCHHHHHHHHHhcCC-Cc
Confidence            78999999999887766654  55321     233 3566666666434 789999999999999999999988654 56


Q ss_pred             ceEE
Q 027992           89 AVFS   92 (215)
Q Consensus        89 ~~i~   92 (215)
                      .+++
T Consensus       116 vvia  119 (210)
T COG1920         116 VVIA  119 (210)
T ss_pred             EEEe
Confidence            5555

>TIGR03310 matur_ygfJ molybdenum hydroxylase accessory protein, YgfJ family

Probab=98.44  E-value=1e-06  Score=67.88  Aligned_cols=77  Identities=17%  Similarity=0.313  Sum_probs=55.5

Q ss_pred             CCCcEEEEcCcHH---HHHHHHHcCCeEEeCCCCCCCchHHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHHHHc
Q 027992            9 LFCGLVVATDDEK---IAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA   85 (215)
Q Consensus         9 ~~d~ivV~td~~~---i~~~~~~~g~~v~~~~~~~~~~~~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~~~~   85 (215)
                      .+++|+|++.++.   +..++.++++.++..+....|...++..|+. +..+.|.++++.||+||++++.|+++++.+..
T Consensus        39 ~~~~iivv~~~~~~~~~~~~~~~~~v~~v~~~~~~~g~~~si~~~l~-~~~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~  117 (188)
T TIGR03310        39 FFDEVILVLGHEADELVALLANHSNITLVHNPQYAEGQSSSIKLGLE-LPVQSDGYLFLLGDQPFVTPDIIQLLLEAFAL  117 (188)
T ss_pred             CCCcEEEEeCCcHHHHHHHhccCCCeEEEECcChhcCHHHHHHHHhc-CCCCCCEEEEEeCCcCCCCHHHHHHHHHHHHh
Confidence            5889999886544   3444445677776655332344457788876 22356899999999999999999999998865


Q ss_pred             C
Q 027992           86 A   86 (215)
Q Consensus        86 ~   86 (215)
                      +
T Consensus       118 ~  118 (188)
T TIGR03310       118 K  118 (188)
T ss_pred             C
Confidence            4

Members of this protein family are probable accessory proteins for the biosynthesis of enzymes related to xanthine dehydrogenase. Comparative genomics suggests a role in the maturation of selenium-dependent molybdenum hydroxylases, although a tenuous alternative hypothesis is a role for this protein (with a requirement for SelD, the selenium donor protein in the selenocysteine and selenouridine biosynthesis pathways) metabolizing a selenium-containing substrate such as selenate.

>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form

Probab=98.40  E-value=2.6e-05  Score=66.34  Aligned_cols=183  Identities=19%  Similarity=0.266  Sum_probs=103.2

Q ss_pred             cCCCCcEEEEcCc---HHHHHHHHH---cCCeE-EeCCCCCCCchH-HHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHH
Q 027992            7 SFLFCGLVVATDD---EKIAECCQQ---FGADV-IMTSESCRNGTE-RCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDG   78 (215)
Q Consensus         7 ~~~~d~ivV~td~---~~i~~~~~~---~g~~v-~~~~~~~~~~~~-~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~   78 (215)
                      ...+++|+|++..   +.+.+.+..   ++..+ +..+.. ..|+. +++.++..+.  .+-++++.||.|+  ..++.+
T Consensus        42 ~~gi~~i~vv~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~G~~~al~~a~~~l~--~~~~li~~gD~~~--~~~l~~  116 (353)
T TIGR01208        42 EAGITDIGIVVGPVTGEEIKEIVGEGERFGAKITYIVQGE-PLGLAHAVYTARDFLG--DDDFVVYLGDNLI--QDGISR  116 (353)
T ss_pred             HCCCCEEEEEeCCCCHHHHHHHHhcccccCceEEEEECCC-CCCHHHHHHHHHHhcC--CCCEEEEECCeec--CccHHH
Confidence            3468999988854   556666643   45444 222222 24554 6788887773  2447788899987  367889


Q ss_pred             HHHHHHc-CCCceEEeecccCCCCccCCCCceEEEEcCCCceecccCCCCCCCCCCCCCCCCCeeEEeeeeeechHHHhh
Q 027992           79 VVKALQA-APDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKI  157 (215)
Q Consensus        79 ~i~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ip~~~~~~~~q~~p~~~~~~~~~~~~~~l~~  157 (215)
                      +++.+.+ +.+..+.+  .+...  . ....+.. .++++.+..+.+.  |  .     +........+.|+|+..++..
T Consensus       117 l~~~~~~~~~d~ti~~--~~~~~--~-~~~g~~~-~~~~~~v~~~~ek--p--~-----~~~~~~~~~Giy~~~~~l~~~  181 (353)
T TIGR01208       117 FVKSFEEKDYDALILL--TKVRD--P-TAFGVAV-LEDGKRILKLVEK--P--K-----EPPSNLAVVGLYMFRPLIFEA  181 (353)
T ss_pred             HHHHHHhcCCCcEEEE--EECCC--h-hhCeEEE-EcCCCcEEEEEEC--C--C-----CCCccceEEEEEEECHHHHHH
Confidence            9998864 33433332  33321  0 0122222 3444544332211  1  0     111134567889998755443


Q ss_pred             CcCCCCCCCCCcc-ch-hhhh-hhhcCCeeEEEEecCCCCCCCCHHHHHHHHHHHHh
Q 027992          158 YPGLHPTPLQLEE-DL-EQLK-VLENGYKMKVIKVDHEAHGVDAPEDVEKIESFMRE  211 (215)
Q Consensus       158 ~~~~~~~~~~~~e-~l-~~~~-~~~~g~~v~~~~~~~~~idIdt~~Dl~~ae~il~~  211 (215)
                      .......  ...| ++ +... ++..|.++..+..+....||+|++|+..|+..+..
T Consensus       182 l~~~~~~--~~~e~~l~d~l~~l~~~g~~v~~~~~~g~w~digt~~dl~~a~~~ll~  236 (353)
T TIGR01208       182 IKNIKPS--WRGELEITDAIQWLIEKGYKVGGSKVTGWWKDTGKPEDLLDANRLILD  236 (353)
T ss_pred             HHhcCCC--CCCcEEHHHHHHHHHHcCCeEEEEEeCcEEEeCCCHHHHHHHHHHHHh
Confidence            3322211  0112 12 2223 33467889888877667899999999999988865

Alternate name: dTDP-D-glucose synthase

>cd04182 GT_2_like_f GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function

Probab=98.39  E-value=2.4e-06  Score=65.49  Aligned_cols=76  Identities=17%  Similarity=0.323  Sum_probs=55.7

Q ss_pred             CCCcEEEEcCcH--HHHHHHHHcCCeEEeCCCCCCCch-HHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHHHHc
Q 027992            9 LFCGLVVATDDE--KIAECCQQFGADVIMTSESCRNGT-ERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA   85 (215)
Q Consensus         9 ~~d~ivV~td~~--~i~~~~~~~g~~v~~~~~~~~~~~-~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~~~~   85 (215)
                      .+++|+|+|.+.  .+.+.+..+++.++..+ ....|. .++..|+..+....|.++++.||+||++++.|+++++.+..
T Consensus        40 ~~~~i~vv~~~~~~~~~~~~~~~~~~~~~~~-~~~~G~~~~i~~al~~~~~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~  118 (186)
T cd04182          40 GLSRVIVVLGAEADAVRAALAGLPVVVVINP-DWEEGMSSSLAAGLEALPADADAVLILLADQPLVTAETLRALIDAFRE  118 (186)
T ss_pred             CCCcEEEECCCcHHHHHHHhcCCCeEEEeCC-ChhhCHHHHHHHHHHhccccCCEEEEEeCCCCCCCHHHHHHHHHHHHh
Confidence            478999999653  34444555566655444 323444 56888998874347899999999999999999999998864

GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.

>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=98.38  E-value=5e-05  Score=66.58  Aligned_cols=180  Identities=19%  Similarity=0.227  Sum_probs=100.0

Q ss_pred             CCcEEEEcCc--HHHHHHHHHcCCeEEeCCCCCCCchHHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHHHHcCC
Q 027992           10 FCGLVVATDD--EKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAP   87 (215)
Q Consensus        10 ~d~ivV~td~--~~i~~~~~~~g~~v~~~~~~~~~~~~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~~~~~~   87 (215)
                      +++|+|++..  +.+.+... .++.++.++..+ +...++++++..+. +.|.++++.||+||++..+++++++.+++. 
T Consensus        42 ~~~i~vv~~~~~~~i~~~~~-~~~~~~~~~~~~-g~~~ai~~a~~~l~-~~~~vlv~~gD~p~i~~~~i~~l~~~~~~~-  117 (448)
T PRK14357         42 AQKVGVVLGHEAELVKKLLP-EWVKIFLQEEQL-GTAHAVMCARDFIE-PGDDLLILYGDVPLISENTLKRLIEEHNRK-  117 (448)
T ss_pred             CCcEEEEeCCCHHHHHHhcc-cccEEEecCCCC-ChHHHHHHHHHhcC-cCCeEEEEeCCcccCCHHHHHHHHHHHHhc-
Confidence            4788888753  44444432 245555454332 33446888888774 357899999999999999999999988642 


Q ss_pred             CceEEeecccCCCCccCCCCce-EEEEcCCCceecccCCCCCCCCCCCCCCCCC--eeEEeeeeeechHHHhh-CcCCCC
Q 027992           88 DAVFSTAVTSLKPEDAFDPNRV-KCVVDNHGYAIYFSRGLIPYNKSGKVNPQFP--YLLHLGIQSYDSNFLKI-YPGLHP  163 (215)
Q Consensus        88 ~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~ip~~~~~~~~q~~p--~~~~~~~~~~~~~~l~~-~~~~~~  163 (215)
                      ++.+++...+..     +|... .+..+ +|......+   | .    ..++..  .....+.|+|+.+.+.+ +..+..
T Consensus       118 ~~d~ti~~~~~~-----~~~~~g~v~~d-~g~v~~~e~---~-~----~~~~~~~~~~~~~GiYv~~~~~l~~~~~~~~~  183 (448)
T PRK14357        118 GADVTILVADLE-----DPTGYGRIIRD-GGKYRIVED---K-D----APEEEKKIKEINTGIYVFSGDFLLEVLPKIKN  183 (448)
T ss_pred             CCeEEEEEEEcC-----CCCCcEEEEEc-CCeEEEEEC---C-C----CChHHhcCcEEEeEEEEEEHHHHHHHHHhhCc
Confidence            333343333432     22222 22233 454321111   1 0    111111  24566779998876544 222211


Q ss_pred             CCCCCccc-h-hhhhhhhcCCeeEEEEe-c-CCCCCCCCHHHHHHHHHHHHh
Q 027992          164 TPLQLEED-L-EQLKVLENGYKMKVIKV-D-HEAHGVDAPEDVEKIESFMRE  211 (215)
Q Consensus       164 ~~~~~~e~-l-~~~~~~~~g~~v~~~~~-~-~~~idIdt~~Dl~~ae~il~~  211 (215)
                      .. ...++ + +....+   .++..+.. + ...++|+|++|+..++.+++.
T Consensus       184 ~~-~~~~~~~~d~i~~~---~~v~~~~~~~~~~~~~i~~~~~l~~~~~~~~~  231 (448)
T PRK14357        184 EN-AKGEYYLTDAVNFA---EKVRVVKTEDLLEITGVNTRIQLAWLEKQLRM  231 (448)
T ss_pred             CC-CCCeEEHHHHHHhh---hheeEEecCCHHHEEccCCHHHHHHHHHHHHH
Confidence            10 01111 2 222221   34555554 2 468899999999999988754

>cd02503 MobA MobA catalyzes the formation of molybdopterin guanine dinucleotide

Probab=98.36  E-value=4.7e-06  Score=63.92  Aligned_cols=70  Identities=19%  Similarity=0.289  Sum_probs=54.0

Q ss_pred             CCcEEEEcCcHHHHHHHHHcCCeEEeCCCCCCCchHHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHHH
Q 027992           10 FCGLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKAL   83 (215)
Q Consensus        10 ~d~ivV~td~~~i~~~~~~~g~~v~~~~~~~~~~~~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~~   83 (215)
                      +++|+|+|..+...  ...+++.++..+....|...+++.|+..+  +.|.++++.||+||++++.++.+++.+
T Consensus        40 ~~~iivv~~~~~~~--~~~~~~~~v~~~~~~~G~~~si~~~l~~~--~~~~vlv~~~D~P~i~~~~i~~l~~~~  109 (181)
T cd02503          40 VDEVVISANRDQER--YALLGVPVIPDEPPGKGPLAGILAALRAA--PADWVLVLACDMPFLPPELLERLLAAA  109 (181)
T ss_pred             cCEEEEECCCChHH--HhhcCCcEeeCCCCCCCCHHHHHHHHHhc--CCCeEEEEeCCcCCCCHHHHHHHHHhh
Confidence            78999999765543  44567777654432223456889999887  478999999999999999999999987

The prokaryotic enzyme molybdopterin-guanine dinucleotide biosynthesis protein A (MobA). All mononuclear molybdoenzymes bind molybdenum in complex with an organic cofactor termed molybdopterin (MPT). In many bacteria, including Escherichia coli, molybdopterin can be further modified by attachment of a GMP group to the terminal phosphate of molybdopterin to form molybdopterin guanine dinucleotide (MGD). This GMP attachment step is catalyzed by MobA, by linking a guanosine 5'-phosphate to MPT forming molybdopterin guanine dinucleotide. This reaction requires GTP, MgCl2, and the MPT form of the cofactor. It is a reaction unique to prokaryotes, and therefore may represent a potential drug target.

>cd02538 G1P_TT_short G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase

Probab=98.33  E-value=8e-05  Score=59.77  Aligned_cols=183  Identities=16%  Similarity=0.189  Sum_probs=98.6

Q ss_pred             cCCCCcEEEEcCc---HHHHHHHH---HcCCeEEeCCCCCCCchH-HHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHH
Q 027992            7 SFLFCGLVVATDD---EKIAECCQ---QFGADVIMTSESCRNGTE-RCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGV   79 (215)
Q Consensus         7 ~~~~d~ivV~td~---~~i~~~~~---~~g~~v~~~~~~~~~~~~-~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~   79 (215)
                      ...+++|+|++..   +.+.+...   .+++.+.........|+. ++..+...+.  .|.++++.||.|+... ++.++
T Consensus        43 ~~gi~~i~vv~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~G~~~al~~a~~~~~--~~~~lv~~gD~~~~~~-~~~~~  119 (240)
T cd02538          43 LAGIREILIISTPEDLPLFKELLGDGSDLGIRITYAVQPKPGGLAQAFIIGEEFIG--DDPVCLILGDNIFYGQ-GLSPI  119 (240)
T ss_pred             HCCCCEEEEEeCcchHHHHHHHHhcccccCceEEEeeCCCCCCHHHHHHHHHHhcC--CCCEEEEECCEEEccH-HHHHH
Confidence            3568899887742   44555553   355555221112224554 5777777763  3567888999998654 78888


Q ss_pred             HHHHHc-CCCceEEeecccCCCCccCCCCc-eEEEEcCCCceecccCCCCCCCCCCCCCCCCCeeEEeeeeeechHHHhh
Q 027992           80 VKALQA-APDAVFSTAVTSLKPEDAFDPNR-VKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKI  157 (215)
Q Consensus        80 i~~~~~-~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~ip~~~~~~~~q~~p~~~~~~~~~~~~~~l~~  157 (215)
                      ++.+.+ +.+..+.+  .+..     +|.. ..+..+++|.+.-+.+.  |       .+........+.|+|...++..
T Consensus       120 ~~~~~~~~~~~~~~~--~~~~-----~~~~~g~v~~d~~g~v~~~~ek--p-------~~~~~~~~~~Giyi~~~~~l~~  183 (240)
T cd02538         120 LQRAAAQKEGATVFG--YEVN-----DPERYGVVEFDENGRVLSIEEK--P-------KKPKSNYAVTGLYFYDNDVFEI  183 (240)
T ss_pred             HHHHHhcCCCcEEEE--EECC-----chhcCceEEecCCCcEEEEEEC--C-------CCCCCCeEEEEEEEECHHHHHH
Confidence            887753 33443332  2332     1111 12223556665444322  1       1111134567789998876643


Q ss_pred             CcCCCCCCCCCccc-h-hhhh-hhhcCCeeEEEEec--CCCCCCCCHHHHHHHHHHHHh
Q 027992          158 YPGLHPTPLQLEED-L-EQLK-VLENGYKMKVIKVD--HEAHGVDAPEDVEKIESFMRE  211 (215)
Q Consensus       158 ~~~~~~~~~~~~e~-l-~~~~-~~~~g~~v~~~~~~--~~~idIdt~~Dl~~ae~il~~  211 (215)
                      .......  +..+. + +... .+..| ++..+..+  ...+||+|++|+..|+++++.
T Consensus       184 l~~~~~~--~~~~~~l~d~~~~l~~~g-~~~~~~~~~~g~w~digt~~~~~~a~~~~~~  239 (240)
T cd02538         184 AKQLKPS--ARGELEITDVNNEYLEKG-KLSVELLGRGFAWLDTGTHESLLEASNFVQT  239 (240)
T ss_pred             HHhcCCC--CCCeEEhHHHHHHHHHhC-CeEEEEeCCCcEEEeCCCHHHHHHHHHHHhh
Confidence            3222111  11111 1 2223 22244 34444433  568999999999999998763

This family is the short form of glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.

>TIGR02665 molyb_mobA molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial

Probab=98.32  E-value=6.8e-06  Score=63.30  Aligned_cols=75  Identities=16%  Similarity=0.232  Sum_probs=54.1

Q ss_pred             CCCcEEEEcCcHHHHHHHHHcCCeEEeCC-CCCCCchHHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHHHHc
Q 027992            9 LFCGLVVATDDEKIAECCQQFGADVIMTS-ESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA   85 (215)
Q Consensus         9 ~~d~ivV~td~~~i~~~~~~~g~~v~~~~-~~~~~~~~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~~~~   85 (215)
                      .+++|+|+|+.+........+|+.++... ....|..++++.|+..+  +.|.++++.||+||++++.|+++++.+..
T Consensus        40 ~~~~ivv~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~~si~~al~~~--~~~~vlv~~~D~P~i~~~~i~~l~~~~~~  115 (186)
T TIGR02665        40 QVSDLAISANRNPERYAQAGFGLPVVPDALADFPGPLAGILAGLRWA--GTDWVLTVPCDTPFLPEDLVARLAAALEA  115 (186)
T ss_pred             hCCEEEEEcCCCHHHHhhccCCCcEEecCCCCCCCCHHHHHHHHHhc--CCCeEEEEecCCCcCCHHHHHHHHHHhhc
Confidence            58899999975543322233566665432 12223456788999887  46899999999999999999999998864

In many molybdopterin-containing enzymes, including nitrate reductase and dimethylsulfoxide reductase, the cofactor is molybdopterin-guanine dinucleotide. The family described here contains MobA, molybdopterin-guanine dinucleotide biosynthesis protein A, from the Proteobacteria only. MobA can reconstitute molybdopterin-guanine dinucleotide biosynthesis without the product of the neighboring gene MobB. The probable MobA proteins of other lineages differ sufficiently that they are not included in scope of this family.

>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional

Probab=98.20  E-value=5.5e-05  Score=64.82  Aligned_cols=72  Identities=13%  Similarity=0.116  Sum_probs=51.1

Q ss_pred             CCCcEEEEcCcHHHHHHHHHcCCeEEeCCCCCCCchHHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHHH
Q 027992            9 LFCGLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKAL   83 (215)
Q Consensus         9 ~~d~ivV~td~~~i~~~~~~~g~~v~~~~~~~~~~~~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~~   83 (215)
                      .+++|+|++..+....+ ..+|+.++..+....|..+.+..|+...  ..+.++++.||+||++++.|+.+++..
T Consensus       213 ~~~~vvV~~~~~~~~~~-~~~~v~~i~d~~~~~Gpl~gi~~al~~~--~~~~~lv~~~DmP~i~~~~i~~L~~~~  284 (369)
T PRK14490        213 HCQEVFISCRAEQAEQY-RSFGIPLITDSYLDIGPLGGLLSAQRHH--PDAAWLVVACDLPFLDEATLQQLVEGR  284 (369)
T ss_pred             hCCEEEEEeCCchhhHH-hhcCCcEEeCCCCCCCcHHHHHHHHHhC--CCCcEEEEeCCcCCCCHHHHHHHHHhc
Confidence            46889998876544333 3468877654322223356677787765  457889999999999999999998864

>cd06425 M1P_guanylylT_B_like_N N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins

Probab=98.12  E-value=0.00034  Score=55.89  Aligned_cols=181  Identities=14%  Similarity=0.099  Sum_probs=99.7

Q ss_pred             cCCCCcEEEEcC--cHHHHHHHHH----cCCeEEeCCCCCCCch-HHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHH
Q 027992            7 SFLFCGLVVATD--DEKIAECCQQ----FGADVIMTSESCRNGT-ERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGV   79 (215)
Q Consensus         7 ~~~~d~ivV~td--~~~i~~~~~~----~g~~v~~~~~~~~~~~-~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~   79 (215)
                      ...+++|+|+|.  .+.+.+...+    .|+.++........|+ .++..+...+....+.++++.||..+  ...+.++
T Consensus        43 ~~g~~~v~iv~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~G~~~al~~a~~~~~~~~~~~lv~~~D~~~--~~~~~~~  120 (233)
T cd06425          43 KAGVKEIILAVNYRPEDMVPFLKEYEKKLGIKITFSIETEPLGTAGPLALARDLLGDDDEPFFVLNSDVIC--DFPLAEL  120 (233)
T ss_pred             HCCCcEEEEEeeeCHHHHHHHHhcccccCCeEEEeccCCCCCccHHHHHHHHHHhccCCCCEEEEeCCEee--CCCHHHH
Confidence            346889999985  4556665543    4666543222223454 46788888774323447888999754  3447888


Q ss_pred             HHHHHc-CCCceEEeecccCCCCccCCCCceEEEEcC-CCceecccCCCCCCCCCCCCCCCCCeeEEeeeeeechHHHhh
Q 027992           80 VKALQA-APDAVFSTAVTSLKPEDAFDPNRVKCVVDN-HGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKI  157 (215)
Q Consensus        80 i~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~ip~~~~~~~~q~~p~~~~~~~~~~~~~~l~~  157 (215)
                      ++.+++ +.++.+.+  .+...  ... .. .+..++ +|.+..+.+.  |.       +........+.|+|+.+.+..
T Consensus       121 ~~~~~~~~~~~~~~~--~~~~~--~~~-~g-~v~~d~~~~~v~~~~ek--p~-------~~~~~~~~~Giyi~~~~~l~~  185 (233)
T cd06425         121 LDFHKKHGAEGTILV--TKVED--PSK-YG-VVVHDENTGRIERFVEK--PK-------VFVGNKINAGIYILNPSVLDR  185 (233)
T ss_pred             HHHHHHcCCCEEEEE--EEcCC--ccc-cC-eEEEcCCCCEEEEEEEC--CC-------CCCCCEEEEEEEEECHHHHHh
Confidence            888764 33443332  33321  001 11 222344 5665433222  10       001134567789999887754


Q ss_pred             CcCCCCCCCCCccchhhhhhhhcCCeeEEEEecCCCCCCCCHHHHHHHHHHH
Q 027992          158 YPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAPEDVEKIESFM  209 (215)
Q Consensus       158 ~~~~~~~~~~~~e~l~~~~~~~~g~~v~~~~~~~~~idIdt~~Dl~~ae~il  209 (215)
                      ..... ..   .+ .+....+....++..++.+....||.|++|+..|.+++
T Consensus       186 l~~~~-~~---~~-~~~~~~l~~~~~v~~~~~~g~w~digt~~~~~~a~~~~  232 (233)
T cd06425         186 IPLRP-TS---IE-KEIFPKMASEGQLYAYELPGFWMDIGQPKDFLKGMSLY  232 (233)
T ss_pred             cccCc-cc---ch-hhhHHHHHhcCCEEEEeeCCEEEcCCCHHHHHHHHHHh
Confidence            43211 11   11 12222222234788888777799999999999998764

GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain and a C-terminal Lefthanded-beta-Helix fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes, such as cell lysis, defective cell wall, and failure of polarized growth and cell separation.

>TIGR03202 pucB xanthine dehydrogenase accessory protein pucB

Probab=98.11  E-value=1.8e-05  Score=61.34  Aligned_cols=79  Identities=14%  Similarity=0.270  Sum_probs=53.6

Q ss_pred             CCCCcEEEEcCcHH--HH---HH-HHHcCCeEEeCCCCCCCchHHHHHHHHHhc-CCCCEEEEecCCCCCCCHHHHHHHH
Q 027992            8 FLFCGLVVATDDEK--IA---EC-CQQFGADVIMTSESCRNGTERCNEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVV   80 (215)
Q Consensus         8 ~~~d~ivV~td~~~--i~---~~-~~~~g~~v~~~~~~~~~~~~~i~~~l~~~~-~~~d~v~~~~~d~Pli~~~~i~~~i   80 (215)
                      ..+++|+|++..+.  +.   +. ....++.++..+....|-.+++..|++++. .+.|+++++.||+||++++.|++++
T Consensus        39 ~~~~~i~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~si~~gl~~~~~~~~d~vlv~~~D~P~v~~~~i~~L~  118 (190)
T TIGR03202        39 SRLSKVIVVIGEKYAHLSWLDPYLLADERIMLVCCRDACEGQAHSLKCGLRKAEAMGADAVVILLADQPFLTADVINALL  118 (190)
T ss_pred             CCCCcEEEEeCCccchhhhhhHhhhcCCCeEEEECCChhhhHHHHHHHHHHHhccCCCCeEEEEeCCCCCCCHHHHHHHH
Confidence            46889999985432  21   11 122355554444322233457889998763 3578999999999999999999999


Q ss_pred             HHHHcC
Q 027992           81 KALQAA   86 (215)
Q Consensus        81 ~~~~~~   86 (215)
                      +.+...
T Consensus       119 ~~~~~~  124 (190)
T TIGR03202       119 ALAKRR  124 (190)
T ss_pred             HHHhhC
Confidence            987643

In Bacillus subtilis the expression of this protein, located in an operon with the structural subunits of xanthine dehydrogenase, has been found to be essential for XDH activity. Some members of this family appear to have a distant relationship to the MobA protein involved in molybdopterin biosynthesis, although this may be coincidental.

>PRK00560 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional

Probab=98.11  E-value=0.00012  Score=57.25  Aligned_cols=64  Identities=20%  Similarity=0.255  Sum_probs=41.5

Q ss_pred             CCcEEEEcCcHHHHHHHHHcCCeEEeC-CCCCCCchHHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHH
Q 027992           10 FCGLVVATDDEKIAECCQQFGADVIMT-SESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVV   80 (215)
Q Consensus        10 ~d~ivV~td~~~i~~~~~~~g~~v~~~-~~~~~~~~~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i   80 (215)
                      ++.|+|++.++..     ..+..++.. .....+....+..++...  +.|.++++.||+||++++++++++
T Consensus        49 ~~~vvvv~~~~~~-----~~~~~~v~d~~~~~~gpl~gi~~~l~~~--~~~~vlv~~~D~P~i~~~~i~~l~  113 (196)
T PRK00560         49 FKKVYISTKDKKF-----EFNAPFLLEKESDLFSPLFGIINAFLTL--QTPEIFFISVDTPFVSFESIKKLC  113 (196)
T ss_pred             CCEEEEEECchhc-----ccCCcEEecCCCCCCCcHHHHHHHHHhc--CCCeEEEEecCcCcCCHHHHHHHH
Confidence            6889999875322     234555443 111122233344555544  568999999999999999999884

>PRK15480 glucose-1-phosphate thymidylyltransferase RfbA; Provisional

Probab=97.99  E-value=0.001  Score=55.28  Aligned_cols=182  Identities=14%  Similarity=0.178  Sum_probs=98.4

Q ss_pred             cCCCCcEEEEc-C--cHHHHHHHH---HcCCeE-EeCCCCCCCchH-HHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHH
Q 027992            7 SFLFCGLVVAT-D--DEKIAECCQ---QFGADV-IMTSESCRNGTE-RCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDG   78 (215)
Q Consensus         7 ~~~~d~ivV~t-d--~~~i~~~~~---~~g~~v-~~~~~~~~~~~~-~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~   78 (215)
                      ...+++|+|++ .  .+.+.+...   ++|..+ +...++. .|++ .+..|...+. +.+ ++++.||.+|.. .++.+
T Consensus        46 ~aGi~~I~ii~~~~~~~~~~~~l~~g~~~g~~i~y~~q~~~-~Gta~Al~~a~~~i~-~~~-~~lv~gD~i~~~-~~l~~  121 (292)
T PRK15480         46 LAGIRDILIISTPQDTPRFQQLLGDGSQWGLNLQYKVQPSP-DGLAQAFIIGEEFIG-GDD-CALVLGDNIFYG-HDLPK  121 (292)
T ss_pred             HCCCCEEEEEecCCchHHHHHHHcCccccCceeEEEECCCC-CCHHHHHHHHHHHhC-CCC-EEEEECCeeeec-cCHHH
Confidence            34689998655 3  345666543   356654 2222222 4554 5677777763 334 666779999864 57888


Q ss_pred             HHHHHHc-CCCceEEeecccCCCCccCCCCce-EEEEcCCCceecccCCCCCCCCCCCCCCCCCeeEEeeeeeechHHHh
Q 027992           79 VVKALQA-APDAVFSTAVTSLKPEDAFDPNRV-KCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLK  156 (215)
Q Consensus        79 ~i~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~ip~~~~~~~~q~~p~~~~~~~~~~~~~~l~  156 (215)
                      +++.+.+ +.++.+.+  .+..     +|... .+..+++|.+.-+.+.  |.       +........+.|+|....+.
T Consensus       122 ll~~~~~~~~~~tv~~--~~v~-----~p~~yGvv~~d~~g~v~~i~EK--P~-------~p~s~~a~~GiY~~~~~v~~  185 (292)
T PRK15480        122 LMEAAVNKESGATVFA--YHVN-----DPERYGVVEFDQNGTAISLEEK--PL-------QPKSNYAVTGLYFYDNDVVE  185 (292)
T ss_pred             HHHHHHhCCCCeEEEE--EEcC-----CcccCcEEEECCCCcEEEEEEC--CC-------CCCCCEEEEEEEEEChHHHH
Confidence            8887753 33433332  2332     22222 1223556665433322  10       11113557788999887655


Q ss_pred             hCcCCCCCCCCCccc-h-hhhh-hhhcCCeeEEEEecC-CCCCCCCHHHHHHHHHHHH
Q 027992          157 IYPGLHPTPLQLEED-L-EQLK-VLENGYKMKVIKVDH-EAHGVDAPEDVEKIESFMR  210 (215)
Q Consensus       157 ~~~~~~~~~~~~~e~-l-~~~~-~~~~g~~v~~~~~~~-~~idIdt~~Dl~~ae~il~  210 (215)
                      ....+.++.  ..|. + +..+ .++.|.....+..+. ..+||.|++|+..|+..++
T Consensus       186 ~~~~~~~~~--~ge~~itd~~~~~l~~g~~~~~~~~~g~~W~DiGt~~~l~~a~~~~~  241 (292)
T PRK15480        186 MAKNLKPSA--RGELEITDINRIYMEQGRLSVAMMGRGYAWLDTGTHQSLIEASNFIA  241 (292)
T ss_pred             HHhhcCCCC--CCeeEhHHHHHHHHhcCCeEEEEecCCcEEECCCCHHHHHHHHHHHH
Confidence            443332221  1111 2 2233 344565433334443 5899999999999998886

>cd06422 NTP_transferase_like_1 NTP_transferase_like_1 is a member of the nucleotidyl transferase family

Probab=97.98  E-value=0.00077  Score=53.27  Aligned_cols=172  Identities=14%  Similarity=0.094  Sum_probs=95.9

Q ss_pred             ccCCCCcEEEEcC--cHHHHHHHHH--cCCeEEe-CCC-CCCCchHHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHH
Q 027992            6 HSFLFCGLVVATD--DEKIAECCQQ--FGADVIM-TSE-SCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGV   79 (215)
Q Consensus         6 ~~~~~d~ivV~td--~~~i~~~~~~--~g~~v~~-~~~-~~~~~~~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~   79 (215)
                      ....+++|+|++.  .+.+.+....  +|+.+.. ... +..|...++..++..+.  .+.++++.||.++-  .++.++
T Consensus        41 ~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~g~~~~l~~~~~~~~--~~~~lv~~~D~i~~--~~~~~~  116 (221)
T cd06422          41 AAAGIRRIVVNTHHLADQIEAHLGDSRFGLRITISDEPDELLETGGGIKKALPLLG--DEPFLVVNGDILWD--GDLAPL  116 (221)
T ss_pred             HHCCCCEEEEEccCCHHHHHHHHhcccCCceEEEecCCCcccccHHHHHHHHHhcC--CCCEEEEeCCeeeC--CCHHHH
Confidence            4456899999995  4666666654  6766532 221 22223346888888773  26799999999874  367788


Q ss_pred             HHHHHc-CCCceEEeecccCCCCccCCCCceEEEEcCCCceecccCCCCCCCCCCCCCCCCCeeEEeeeeeechHHHhhC
Q 027992           80 VKALQA-APDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIY  158 (215)
Q Consensus        80 i~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ip~~~~~~~~q~~p~~~~~~~~~~~~~~l~~~  158 (215)
                      ++.+.+ ..++.+++...+...   ..... .+..+++|.+..+.+.  |         . ......+.|+|..+.+...
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~---~~~~g-~v~~d~~~~v~~~~~~--~---------~-~~~~~~Giyi~~~~~l~~l  180 (221)
T cd06422         117 LLLHAWRMDALLLLLPLVRNPG---HNGVG-DFSLDADGRLRRGGGG--A---------V-APFTFTGIQILSPELFAGI  180 (221)
T ss_pred             HHHHHhccCCCceEEEEEEcCC---CCCcc-eEEECCCCcEeecccC--C---------C-CceEEEEEEEEcHHHHhhC
Confidence            887752 234444443323210   01112 2334556655433211  0         0 1355778899988776543


Q ss_pred             cCCCCCCCCCccch-hhhh-hhhcCCeeEEEEecCCCCCCCCHHHHHHH
Q 027992          159 PGLHPTPLQLEEDL-EQLK-VLENGYKMKVIKVDHEAHGVDAPEDVEKI  205 (215)
Q Consensus       159 ~~~~~~~~~~~e~l-~~~~-~~~~g~~v~~~~~~~~~idIdt~~Dl~~a  205 (215)
                      ..-   ..    .+ +... .+..| ++..++.+....||+|++|+..|
T Consensus       181 ~~~---~~----~~~d~~~~l~~~~-~~~~~~~~g~w~di~t~~~~~~a  221 (221)
T cd06422         181 PPG---KF----SLNPLWDRAIAAG-RLFGLVYDGLWFDVGTPERLLAA  221 (221)
T ss_pred             CcC---cc----cHHHHHHHHHHcC-CeEEEecCCEEEcCCCHHHHhhC
Confidence            211   00    11 1222 22234 45555555678999999999754

This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.

>TIGR01207 rmlA glucose-1-phosphate thymidylyltransferase, short form

Probab=97.93  E-value=0.00098  Score=55.16  Aligned_cols=182  Identities=17%  Similarity=0.229  Sum_probs=96.4

Q ss_pred             ccCCCCcEEEEcC--c-HHHHHHHH---HcCCeE-EeCCCCCCCchH-HHHHHHHHhcCCCCEEEEecCCCCCCCHHHHH
Q 027992            6 HSFLFCGLVVATD--D-EKIAECCQ---QFGADV-IMTSESCRNGTE-RCNEALQKLEKKYDIVVNIQGDEPLIEPEIID   77 (215)
Q Consensus         6 ~~~~~d~ivV~td--~-~~i~~~~~---~~g~~v-~~~~~~~~~~~~-~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~   77 (215)
                      ....+++|+|++.  . +.+.+...   ++|+++ +..+++ ..|++ ++..+...+. + +-++++.||.+|. ..++.
T Consensus        41 ~~aGi~~I~iv~~~~~~~~~~~~lg~g~~~g~~i~~~~q~~-~~Gta~al~~a~~~l~-~-~~~~li~gD~i~~-~~~l~  116 (286)
T TIGR01207        41 MLAGIRDILIISTPQDTPRFQQLLGDGSQWGVNLSYAVQPS-PDGLAQAFIIGEDFIG-G-DPSALVLGDNIFY-GHDLS  116 (286)
T ss_pred             HHCCCCEEEEEecCCcHHHHHHHhccccccCceEEEEEccC-CCCHHHHHHHHHHHhC-C-CCEEEEECCEecc-ccCHH
Confidence            3456889986663  2 44555543   356655 222222 23554 6777777773 2 4456667999985 46788


Q ss_pred             HHHHHHHc-CCCceEEeecccCCCCccCCCCce-EEEEcCCCceecccCCCCCCCCCCCCCCCCCeeEEeeeeeechHHH
Q 027992           78 GVVKALQA-APDAVFSTAVTSLKPEDAFDPNRV-KCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFL  155 (215)
Q Consensus        78 ~~i~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~ip~~~~~~~~q~~p~~~~~~~~~~~~~~l  155 (215)
                      ++++.+.+ +.++.+.  ..+..     +|... .+..+++|.+.-+.+.  |.       +........+.|+|....+
T Consensus       117 ~ll~~~~~~~~~~ti~--~~~v~-----~p~~yGvv~~d~~g~V~~i~EK--p~-------~~~s~~~~~GiYi~~~~i~  180 (286)
T TIGR01207       117 DLLKRAAARESGATVF--AYQVS-----DPERYGVVEFDSNGRAISIEEK--PA-------QPKSNYAVTGLYFYDNRVV  180 (286)
T ss_pred             HHHHHHHhcCCCcEEE--EEEcc-----CHHHCceEEECCCCeEEEEEEC--CC-------CCCCCEEEEEEEEEchHHH
Confidence            88887753 3333332  22332     22222 2223556665444322  11       0001345678899987765


Q ss_pred             hhCcCCCCCCCCCcc-ch-hhhh-hhhcCCeeEEEEe-cC-CCCCCCCHHHHHHHHHHHH
Q 027992          156 KIYPGLHPTPLQLEE-DL-EQLK-VLENGYKMKVIKV-DH-EAHGVDAPEDVEKIESFMR  210 (215)
Q Consensus       156 ~~~~~~~~~~~~~~e-~l-~~~~-~~~~g~~v~~~~~-~~-~~idIdt~~Dl~~ae~il~  210 (215)
                      .....+.++.  ..| .+ +... .+..|. ..+... .. .-+||.|++||..|...++
T Consensus       181 ~~l~~~~~~~--~ge~eitdv~~~~l~~g~-l~v~~~~~g~~W~DiGt~~~l~~A~~~~~  237 (286)
T TIGR01207       181 EIARQLKPSA--RGELEITDLNRVYLEEGR-LSVELLGRGYAWLDTGTHDSLLEASNFIQ  237 (286)
T ss_pred             HHHhhcCCCC--CCcEeHHHHHHHHHHcCC-cEEEEecCCCEEEeCCCHHHHHHHHHHHH
Confidence            4333322211  111 12 3223 333453 333333 22 3799999999999988876

This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.

>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=97.91  E-value=0.001  Score=58.57  Aligned_cols=167  Identities=11%  Similarity=0.111  Sum_probs=88.3

Q ss_pred             cCCCCcEEEEcC--cHHHHHHHHHcCCeEEeCCCCCCCchHHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHHHH
Q 027992            7 SFLFCGLVVATD--DEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQ   84 (215)
Q Consensus         7 ~~~~d~ivV~td--~~~i~~~~~~~g~~v~~~~~~~~~~~~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~~~   84 (215)
                      ...+++|+|++.  .+.+.+.+...++.++..+.. .+...+++.++..+. +.+.++++.||+||+++.+++++++...
T Consensus        45 ~~gi~~i~vv~~~~~~~i~~~~~~~~~~~i~~~~~-~Gt~~al~~a~~~l~-~~~~vlV~~gD~P~i~~~~i~~l~~~~~  122 (456)
T PRK09451         45 ELGAQHVHLVYGHGGDLLKQTLADEPLNWVLQAEQ-LGTGHAMQQAAPFFA-DDEDILMLYGDVPLISVETLQRLRDAKP  122 (456)
T ss_pred             hcCCCcEEEEECCCHHHHHHhhccCCcEEEECCCC-CCcHHHHHHHHHhhc-cCCcEEEEeCCcccCCHHHHHHHHHHhh
Confidence            346889998885  355666554444555544432 222346777777763 3478999999999999999999988764


Q ss_pred             cCCCceEEeecccCCCCccCCCCceEEEEcCCCceecccCCCCCCCCCCCCCCCCCeeEEeeeeeechHHHhhC-cCCCC
Q 027992           85 AAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIY-PGLHP  163 (215)
Q Consensus        85 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ip~~~~~~~~q~~p~~~~~~~~~~~~~~l~~~-~~~~~  163 (215)
                      +. +..+.  ..+..     +|...-++.+++|.+..|.+.+  ...   ..+..-.....+.|+|+.+.+.++ ..+..
T Consensus       123 ~~-~~~i~--~~~~~-----~~~~yG~v~~~~g~V~~~~EKp--~~~---~~~~~~~~~~~GiYi~~~~~l~~~l~~~~~  189 (456)
T PRK09451        123 QG-GIGLL--TVKLD-----NPTGYGRITRENGKVVGIVEQK--DAT---DEQRQIQEINTGILVANGADLKRWLAKLTN  189 (456)
T ss_pred             cC-CEEEE--EEEcC-----CCCCceEEEecCCeEEEEEECC--CCC---hHHhhccEEEEEEEEEEHHHHHHHHHhcCC
Confidence            43 32222  22332     1111111223456655443321  000   011101245677899987666432 22211


Q ss_pred             CCCCCcc-ch-hhhh-hhhcCCeeEEEEe
Q 027992          164 TPLQLEE-DL-EQLK-VLENGYKMKVIKV  189 (215)
Q Consensus       164 ~~~~~~e-~l-~~~~-~~~~g~~v~~~~~  189 (215)
                      .. ...| ++ +... ++..|.++..+..
T Consensus       190 ~~-~~~e~~l~d~i~~~i~~g~~v~~~~~  217 (456)
T PRK09451        190 NN-AQGEYYITDIIALAHQEGREIVAVHP  217 (456)
T ss_pred             cc-ccCceeHHHHHHHHHHCCCeEEEEec
Confidence            11 0111 22 2222 3446788888753

>TIGR01099 galU UTP-glucose-1-phosphate uridylyltransferase

Probab=97.89  E-value=0.001  Score=54.00  Aligned_cols=148  Identities=10%  Similarity=0.027  Sum_probs=79.4

Q ss_pred             CchH-HHHHHHHHhcCCCCEEEEecCCCCCCCH-HHHHHHHHHHHcCCCceEEeecccCCCCccCCCCce-EEEEc----
Q 027992           42 NGTE-RCNEALQKLEKKYDIVVNIQGDEPLIEP-EIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRV-KCVVD----  114 (215)
Q Consensus        42 ~~~~-~i~~~l~~~~~~~d~v~~~~~d~Pli~~-~~i~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~----  114 (215)
                      .|+. ++..++..+  ..+.++++.||.|+... .++.++++.+++....++++...+..     ++... .+..+    
T Consensus       104 ~G~~~al~~~~~~~--~~~~~lv~~gD~~~~~~~~~~~~l~~~~~~~~~~ii~~~~~~~~-----~~~~~g~v~~d~~~~  176 (260)
T TIGR01099       104 KGLGHAVLCAEPFV--GDEPFAVILGDDIVVSEEPALKQMIDLYEKYGCSIIAVEEVPKE-----EVSKYGVIDGEGVEE  176 (260)
T ss_pred             CCHHHHHHHHHHhh--CCCCEEEEeccceecCCcHHHHHHHHHHHHhCCCEEEEEECChh-----hcccCceEEeccccC
Confidence            4554 677777776  33668999999999877 58999999886532333333211111     11111 12222    


Q ss_pred             CCCceecccCCCCCCCCCCCCCCCCCeeEEeeeeeechHHHhhCcCCCCCCCCCccc-h-hhhhhhhcCCeeEEEEecCC
Q 027992          115 NHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEED-L-EQLKVLENGYKMKVIKVDHE  192 (215)
Q Consensus       115 ~~g~~~~~~~~~ip~~~~~~~~q~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~-l-~~~~~~~~g~~v~~~~~~~~  192 (215)
                      ++|.+..+.+.+.+       .+........+.|+|+.+.+........+.  ..+. + +....+....++..++.+..
T Consensus       177 ~~~~v~~~~Ekp~~-------~~~~~~~~~~Giyi~~~~~~~~l~~~~~~~--~~~~~l~d~i~~l~~~~~v~~~~~~g~  247 (260)
T TIGR01099       177 GLYEIKDMVEKPKP-------EEAPSNLAIVGRYVLTPDIFDLLEETPPGA--GGEIQLTDALRKLLEKETVYAYKFKGK  247 (260)
T ss_pred             CceeEEEEEECCCC-------CCCCCceEEEEEEECCHHHHHHHHhCCCCC--CCceeHHHHHHHHHhcCCEEEEEcceE
Confidence            22455444332100       011113556778999887655442221110  1111 2 22232222346888887667


Q ss_pred             CCCCCCHHHHHHH
Q 027992          193 AHGVDAPEDVEKI  205 (215)
Q Consensus       193 ~idIdt~~Dl~~a  205 (215)
                      ..||.|++|+..|
T Consensus       248 w~digs~~~y~~a  260 (260)
T TIGR01099       248 RYDCGSKLGYLKA  260 (260)
T ss_pred             EEeCCCHHHHhhC
Confidence            8999999998653

Built to distinquish between the highly similar genes galU and galF

>TIGR00454 conserved hypothetical protein TIGR00454

Probab=97.88  E-value=0.00017  Score=55.75  Aligned_cols=74  Identities=20%  Similarity=0.207  Sum_probs=53.0

Q ss_pred             CCCCcEEEEcC--cHHHHHHHHHcCCeEEeCCCCCCCc-hHHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHHHH
Q 027992            8 FLFCGLVVATD--DEKIAECCQQFGADVIMTSESCRNG-TERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQ   84 (215)
Q Consensus         8 ~~~d~ivV~td--~~~i~~~~~~~g~~v~~~~~~~~~~-~~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~~~   84 (215)
                      ..+++|+|++.  .+.++..+++.+..+. .  ....| ..++..|+..+. ..+.++++.||+||+++++|+.+++++.
T Consensus        40 ~~i~~I~Vv~~~~~~~~~~~l~~~~~~~~-~--~~g~G~~~~l~~al~~~~-~~~~~lv~~~D~P~i~~~~i~~li~~~~  115 (183)
T TIGR00454        40 SKVNNIIIATSPHTPKTEEYINSAYKDYK-N--ASGKGYIEDLNECIGELY-FSEPFLVVSSDLINLRSKIIDSIVDYYY  115 (183)
T ss_pred             CCCCEEEEEeCCCHHHHHHHHhhcCcEEE-e--cCCCCHHHHHHHHhhccc-CCCCEEEEeCCcCcCCHHHHHHHHHHHH
Confidence            34899999985  4567777766554433 2  22234 346788887542 3467999999999999999999999985


Q ss_pred             c
Q 027992           85 A   85 (215)
Q Consensus        85 ~   85 (215)
                      .
T Consensus       116 ~  116 (183)
T TIGR00454       116 C  116 (183)
T ss_pred             h
Confidence            4

At this time this gene appears to be present only in Archea

>TIGR01105 galF UTP-glucose-1-phosphate uridylyltransferase, non-catalytic GalF subunit

Probab=97.85  E-value=0.0042  Score=51.68  Aligned_cols=183  Identities=10%  Similarity=0.066  Sum_probs=96.4

Q ss_pred             ccCCCCcEEEEcC--cHHHHHHHHH-------------------------cCCeE-EeCCCCCCCchH-HHHHHHHHhcC
Q 027992            6 HSFLFCGLVVATD--DEKIAECCQQ-------------------------FGADV-IMTSESCRNGTE-RCNEALQKLEK   56 (215)
Q Consensus         6 ~~~~~d~ivV~td--~~~i~~~~~~-------------------------~g~~v-~~~~~~~~~~~~-~i~~~l~~~~~   56 (215)
                      ...++++|+|++.  .+.+.+....                         +|+++ +....+ .-|++ +++.|...+. 
T Consensus        45 ~~~Gi~~ivivv~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~q~~-~lGtg~Av~~a~~~l~-  122 (297)
T TIGR01105        45 VAAGIKEIVLVTHASKNAVENHFDTSYELESLLEQRVKRQLLAEVQSICPPGVTIMNVRQAQ-PLGLGHSILCARPVVG-  122 (297)
T ss_pred             HHCCCCEEEEEecCChHHHHHHHhchHHHHHHHHHhcchhhhhhhhhcCCCCceEEEeeCCC-cCchHHHHHHHHHHhC-
Confidence            3457899999994  4556555431                         35444 222222 23554 6788888774 


Q ss_pred             CCCEEEEecCCCCCCCH-------HHHHHHHHHHHcCCCceEEeecccCCCCccCCCCce-EEEE----cCCCce---ec
Q 027992           57 KYDIVVNIQGDEPLIEP-------EIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRV-KCVV----DNHGYA---IY  121 (215)
Q Consensus        57 ~~d~v~~~~~d~Pli~~-------~~i~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~----~~~g~~---~~  121 (215)
                      + +-++++.||. +++.       -++.++++.+.+...+++.+...+-      ++... .+..    +++|.+   .-
T Consensus       123 ~-~~flvv~gD~-l~~~~~~~~~~~~l~~li~~~~~~~~~~~~~~~~~~------~~~~yGvv~~~~~~d~~g~v~~I~~  194 (297)
T TIGR01105       123 D-NPFVVVLPDI-IIDDATADPLRYNLAAMIARFNETGRSQVLAKRMPG------DLSEYSVIQTKEPLDREGKVSRIVE  194 (297)
T ss_pred             C-CCEEEEECCe-eccccccccchhHHHHHHHHHHHhCCcEEEEEEcCC------CCccceEEEecccccCCCCeeeEeE
Confidence            2 3356666985 4432       4788998887643334433322211      12222 1222    223432   22


Q ss_pred             ccCCCCCCCCCCCCCCCCC-eeEEeeeeeechHHHhhCcCCCCCCCCCccc-h-hhhhhhhcCCeeEEEEecCCCCCCCC
Q 027992          122 FSRGLIPYNKSGKVNPQFP-YLLHLGIQSYDSNFLKIYPGLHPTPLQLEED-L-EQLKVLENGYKMKVIKVDHEAHGVDA  198 (215)
Q Consensus       122 ~~~~~ip~~~~~~~~q~~p-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~-l-~~~~~~~~g~~v~~~~~~~~~idIdt  198 (215)
                      |.+.  |.     .....+ ...+.+.|+|..+.+........+  ...|. + +....+..+.++..+..+...+||-|
T Consensus       195 ~~EK--P~-----~~~~~~s~~~~~GiYi~~~~i~~~l~~~~~~--~~ge~~ltd~i~~l~~~~~v~~~~~~g~w~DiG~  265 (297)
T TIGR01105       195 FIEK--PD-----QPQTLDSDLMAVGRYVLSADIWAELERTEPG--AWGRIQLTDAIAELAKKQSVDAMLMTGDSYDCGK  265 (297)
T ss_pred             EEEC--CC-----CcccCCcCEEEEEEEEECHHHHHHHhcCCCC--CCCeeeHHHHHHHHHhcCCEEEEEeccEEECCCC
Confidence            2111  10     011111 356778899988766654433222  11221 2 23333334457877776667899999


Q ss_pred             HHHHHHHHH
Q 027992          199 PEDVEKIES  207 (215)
Q Consensus       199 ~~Dl~~ae~  207 (215)
                      |+|+..|..
T Consensus       266 p~~~~~a~~  274 (297)
T TIGR01105       266 KMGYMQAFV  274 (297)
T ss_pred             HHHHHHHHH
Confidence            999999843

GalF is a non-catalytic subunit of the UTP-glucose pyrophosphorylase modulating the enzyme activity to increase the formation of UDP-glucose

>cd02541 UGPase_prokaryotic Prokaryotic UGPase catalyses the synthesis of UDP-glucose

Probab=97.83  E-value=0.0019  Score=52.67  Aligned_cols=153  Identities=11%  Similarity=0.056  Sum_probs=82.4

Q ss_pred             Cch-HHHHHHHHHhcCCCCEEEEecCCCCCCCHH-HHHHHHHHHHcCCCceEEeecccCCCCccCCCCceEEEEcC----
Q 027992           42 NGT-ERCNEALQKLEKKYDIVVNIQGDEPLIEPE-IIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDN----  115 (215)
Q Consensus        42 ~~~-~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~-~i~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~----  115 (215)
                      .|+ .++..++..+.  .+.++++.||.++...+ ++.++++.+++....++.+...+..   ......+ +..++    
T Consensus       104 ~Gt~~al~~~~~~i~--~~~~lv~~gD~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~---~~~~~g~-v~~d~~~~~  177 (267)
T cd02541         104 LGLGHAVLCAKPFIG--DEPFAVLLGDDLIDSKEPCLKQLIEAYEKTGASVIAVEEVPPE---DVSKYGI-VKGEKIDGD  177 (267)
T ss_pred             CChHHHHHHHHHHhC--CCceEEEECCeEEeCCchHHHHHHHHHHHhCCCEEEEEEcChh---cCccceE-EEeecCCCC
Confidence            455 46788877773  26789999999998775 8999999886432333332211110   0011122 22232    


Q ss_pred             CCceecccCCCCCCCCCCCCCCCCCeeEEeeeeeechHHHhhCcCCCCCCCCCccc-h-hhhh-hhhcCCeeEEEEecCC
Q 027992          116 HGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEED-L-EQLK-VLENGYKMKVIKVDHE  192 (215)
Q Consensus       116 ~g~~~~~~~~~ip~~~~~~~~q~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~-l-~~~~-~~~~g~~v~~~~~~~~  192 (215)
                      +|.+.-+.+.  |..     ..........+.|+|..+++........+  ...|. + +... .+..| ++..++.+..
T Consensus       178 ~~~v~~~~Ek--p~~-----~~~~~~~~~~Giyi~~~~~~~~l~~~~~~--~~~e~~~~d~i~~l~~~~-~v~~~~~~g~  247 (267)
T cd02541         178 VFKVKGLVEK--PKP-----EEAPSNLAIVGRYVLTPDIFDILENTKPG--KGGEIQLTDAIAKLLEEE-PVYAYVFEGK  247 (267)
T ss_pred             ceEEeEEEEC--CCC-----CCCCCceEEEEEEEcCHHHHHHHHhCCCC--CCCcEEHHHHHHHHHhcC-CEEEEEeeeE
Confidence            1244322221  100     00111345677899988766544321111  11111 2 2223 22345 7888877667


Q ss_pred             CCCCCCHHHHHHHHHHHH
Q 027992          193 AHGVDAPEDVEKIESFMR  210 (215)
Q Consensus       193 ~idIdt~~Dl~~ae~il~  210 (215)
                      ..||.|++|+..|..-|.
T Consensus       248 w~digt~~~y~~a~~~~~  265 (267)
T cd02541         248 RYDCGNKLGYLKATVEFA  265 (267)
T ss_pred             EEeCCCHHHHHHHHHHHh
Confidence            899999999998876543

Prokaryotic UDP-Glucose Pyrophosphorylase (UGPase) catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans. UGPase is found in both prokaryotes and eukaryotes, although prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity.

>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]

Probab=97.76  E-value=0.0031  Score=53.92  Aligned_cols=188  Identities=18%  Similarity=0.177  Sum_probs=112.0

Q ss_pred             cccccCCCCcEEEEcC--cHHHHHHHHH---cCCeE-EeCCCCCCCchH-HHHHHHHHhcCCCCEEEEecCCCCCCCHHH
Q 027992            3 VMCHSFLFCGLVVATD--DEKIAECCQQ---FGADV-IMTSESCRNGTE-RCNEALQKLEKKYDIVVNIQGDEPLIEPEI   75 (215)
Q Consensus         3 ~a~~~~~~d~ivV~td--~~~i~~~~~~---~g~~v-~~~~~~~~~~~~-~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~   75 (215)
                      ..++...|.+|+|++.  .+.|.+....   +|..+ +..+.. ..|++ +++++...+..  +.++++.||..+-..  
T Consensus        40 ~~L~~~Gv~eivi~~~y~~~~i~~~~~d~~~~~~~I~y~~e~~-~lGTag~l~~a~~~l~~--~~f~v~~GDv~~~~d--  114 (358)
T COG1208          40 EALAAAGVEEIVLVVGYLGEQIEEYFGDGEGLGVRITYVVEKE-PLGTAGALKNALDLLGG--DDFLVLNGDVLTDLD--  114 (358)
T ss_pred             HHHHHCCCcEEEEEeccchHHHHHHHhcccccCCceEEEecCC-cCccHHHHHHHHHhcCC--CcEEEEECCeeeccC--
Confidence            3455678999999984  5777777665   35655 222222 34554 78888888742  889999999977666  


Q ss_pred             HHHHHHHHHcCCCceEEeecccCCCCccCCCCceEEEEcCCCceecccCCCCCCCCCCCCCCCCC-eeEEeeeeeechHH
Q 027992           76 IDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFP-YLLHLGIQSYDSNF  154 (215)
Q Consensus        76 i~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ip~~~~~~~~q~~p-~~~~~~~~~~~~~~  154 (215)
                      ++.+++.++++ .+..++...+... +  ....+....++++.+..|...+        ..+..+ ...+.+.|+|....
T Consensus       115 l~~l~~~~~~~-~~~~~~~~~~~~~-~--~~~Gvv~~~~~~~~v~~f~ekp--------~~~~~~~~~in~Giyi~~~~v  182 (358)
T COG1208         115 LSELLEFHKKK-GALATIALTRVLD-P--SEFGVVETDDGDGRVVEFREKP--------GPEEPPSNLINAGIYIFDPEV  182 (358)
T ss_pred             HHHHHHHHHhc-cCccEEEEEecCC-C--CcCceEEecCCCceEEEEEecC--------CCCCCCCceEEeEEEEECHHH
Confidence            99999998765 4444433333321 1  1122222211224555443321        011222 57788889998877


Q ss_pred             HhhCcCCCCCCCCCccchhhhh-hhhcCCeeEEEEecCCCCCCCCHHHHHHHHHHHHh
Q 027992          155 LKIYPGLHPTPLQLEEDLEQLK-VLENGYKMKVIKVDHEAHGVDAPEDVEKIESFMRE  211 (215)
Q Consensus       155 l~~~~~~~~~~~~~~e~l~~~~-~~~~g~~v~~~~~~~~~idIdt~~Dl~~ae~il~~  211 (215)
                      +.-+..-....+  .+  +... .++.|..+..+..+..-+||+||+|+..|++++..
T Consensus       183 ~~~i~~~~~~~~--~~--~~~~~l~~~~~~v~~~~~~g~W~dig~p~d~~~a~~~~~~  236 (358)
T COG1208         183 FDYIEKGERFDF--EE--ELLPALAAKGEDVYGYVFEGYWLDIGTPEDLLEANELLLR  236 (358)
T ss_pred             hhhcccCCcccc--hh--hHHHHHHhCCCcEEEEEeCCeEEeCCCHHHHHHHHHHHHh
Confidence            662221111111  11  1233 23356557777776689999999999999998864

>PRK14500 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MoaC/MobA; Provisional

Probab=97.75  E-value=0.00065  Score=57.67  Aligned_cols=73  Identities=7%  Similarity=-0.013  Sum_probs=50.1

Q ss_pred             CCCcEEEEcCcHHHHHHHHHcCCeEEeCCCCCCCchHHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHHHH
Q 027992            9 LFCGLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQ   84 (215)
Q Consensus         9 ~~d~ivV~td~~~i~~~~~~~g~~v~~~~~~~~~~~~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~~~   84 (215)
                      .+++|+|++.++..... ...++.++.......|..++++.|+....  .+.++++.+|+||++++.|..+++.+.
T Consensus       199 ~~~~ViVv~~~~~~~~~-~~~~v~~I~D~~~~~GPlagI~aaL~~~~--~~~~lVl~cDmP~l~~~~l~~L~~~~~  271 (346)
T PRK14500        199 YCEQVFLSARPSQWQGT-PLENLPTLPDRGESVGPISGILTALQSYP--GVNWLVVACDLAYLNSETVEKLLAHYR  271 (346)
T ss_pred             hCCEEEEEeCchHhhhc-cccCCeEEeCCCCCCChHHHHHHHHHhCC--CCCEEEEECCcCCCCHHHHHHHHHhhh
Confidence            47889999876542211 11244554433333355678999998763  346789999999999999999999874

>cd06426 NTP_transferase_like_2 NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family

Probab=97.61  E-value=0.005  Score=48.47  Aligned_cols=168  Identities=18%  Similarity=0.265  Sum_probs=91.3

Q ss_pred             cCCCCcEEEEcCc--HHHHHHHHH---cCCeE-E-eCCCCCCCchH-HHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHH
Q 027992            7 SFLFCGLVVATDD--EKIAECCQQ---FGADV-I-MTSESCRNGTE-RCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDG   78 (215)
Q Consensus         7 ~~~~d~ivV~td~--~~i~~~~~~---~g~~v-~-~~~~~~~~~~~-~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~   78 (215)
                      ...+++|+|++..  +.+.+...+   +|..+ + ..+..  .|+. ++..+...   ..+.++++.||.  +....+..
T Consensus        41 ~~~~~~iivv~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~--~g~~~~l~~~~~~---~~~~~lv~~~D~--i~~~~~~~  113 (220)
T cd06426          41 AQGFRNFYISVNYLAEMIEDYFGDGSKFGVNISYVREDKP--LGTAGALSLLPEK---PTDPFLVMNGDI--LTNLNYEH  113 (220)
T ss_pred             HCCCcEEEEECccCHHHHHHHHCCccccCccEEEEECCCC--CcchHHHHHHHhh---CCCCEEEEcCCE--eeccCHHH
Confidence            3468899999964  445555432   45544 2 22222  3443 33333222   246788889994  66678999


Q ss_pred             HHHHHHcCCCceEEeecccCCCCccCCCCceEEEEcCCCceecccCCCCCCCCCCCCCCCCCeeEEeeeeeechHHHhhC
Q 027992           79 VVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIY  158 (215)
Q Consensus        79 ~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ip~~~~~~~~q~~p~~~~~~~~~~~~~~l~~~  158 (215)
                      +++.++.. +..+++...+...   ..+.. .+..+ +|.+..+.+.  |        .. ......+.|+|+.+.+...
T Consensus       114 l~~~~~~~-~~~~~~~~~~~~~---~~~~g-~~~~d-~~~v~~~~ek--~--------~~-~~~~~~Giy~~~~~~~~~i  176 (220)
T cd06426         114 LLDFHKEN-NADATVCVREYEV---QVPYG-VVETE-GGRITSIEEK--P--------TH-SFLVNAGIYVLEPEVLDLI  176 (220)
T ss_pred             HHHHHHhc-CCCEEEEEEEcCC---CCcce-EEEEC-CCEEEEEEEC--C--------CC-CCeEEEEEEEEcHHHHhhc
Confidence            99988643 2223322223211   11121 12223 3555433321  1        01 1244667899988766543


Q ss_pred             cCCCCCCCCCccc-h-hhhh-hhhcCCeeEEEEecCCCCCCCCHHHHHHH
Q 027992          159 PGLHPTPLQLEED-L-EQLK-VLENGYKMKVIKVDHEAHGVDAPEDVEKI  205 (215)
Q Consensus       159 ~~~~~~~~~~~e~-l-~~~~-~~~~g~~v~~~~~~~~~idIdt~~Dl~~a  205 (215)
                      ..   .    .++ + +..+ .+..|.++..++.+..-.+|+|++|+..|
T Consensus       177 ~~---~----~~~~l~~~~~~~i~~~~~i~~~~~~~~w~~igt~~dl~~a  219 (220)
T cd06426         177 PK---N----EFFDMPDLIEKLIKEGKKVGVFPIHEYWLDIGRPEDYEKA  219 (220)
T ss_pred             CC---C----CCcCHHHHHHHHHHCCCcEEEEEeCCeEEeCCCHHHHHhh
Confidence            21   1    111 2 2222 33467789888887778999999999876

This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.

>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit

Probab=97.56  E-value=0.0049  Score=52.69  Aligned_cols=191  Identities=10%  Similarity=0.056  Sum_probs=99.1

Q ss_pred             cccccCCCCcEEEEcCc--H-HHHHHHHH---cCCe-------E-EeCCC-CCCCchH-HHHHHHHHhcC-CCCEEEEec
Q 027992            3 VMCHSFLFCGLVVATDD--E-KIAECCQQ---FGAD-------V-IMTSE-SCRNGTE-RCNEALQKLEK-KYDIVVNIQ   65 (215)
Q Consensus         3 ~a~~~~~~d~ivV~td~--~-~i~~~~~~---~g~~-------v-~~~~~-~~~~~~~-~i~~~l~~~~~-~~d~v~~~~   65 (215)
                      .++....+++|+|++..  + .|.+....   +|..       + +..+. .+.+|.. ++..+...+.. ..+.++++.
T Consensus        42 ~~L~~~Gi~~I~iv~~~~~~~~I~~~l~~~~~~~~~~~~~~~~~~~~~e~~~l~tg~~~a~~~a~~~l~~~~~~~~lvln  121 (369)
T TIGR02092        42 SNMVNAGIRNVFIFFKNKERQSLFDHLGSGREWDLHRKRDGLFVFPYNDRDDLSEGGKRYFSQNLEFLKRSTSEYTVVLN  121 (369)
T ss_pred             hhhhccCCCEEEEEeCCCcHHHHHHHHhCCCCCCcccccCcEEEEeccCCCCcccChHHHHHHHHHHHHhCCCCEEEEEC
Confidence            34555789999999954  4 78777742   3433       1 22222 2222333 46666666531 236899999


Q ss_pred             CCCCCCCHHHHHHHHHHHHcCCCceEEeecccCCCCccCCCCceEEEEcCCCceecccCCCCCCCCCCCCCCCCCeeEEe
Q 027992           66 GDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHL  145 (215)
Q Consensus        66 ~d~Pli~~~~i~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ip~~~~~~~~q~~p~~~~~  145 (215)
                      ||.  +...++.++++.+++. ++.+++...+.... ........+..+++|.+..+.+.. +        ++.......
T Consensus       122 GD~--l~~~dl~~ll~~h~~~-~a~~tl~~~~v~~~-~~~~~g~vv~~~~~g~v~~~~~~~-~--------~~~~~~~~~  188 (369)
T TIGR02092       122 SHM--VCNIDLKAVLKYHEET-GKDITVVYKKVKPA-DASEYDTILRFDESGKVKSIGQNL-N--------PEEEENISL  188 (369)
T ss_pred             CCE--EEecCHHHHHHHHHHc-CCCEEEEEEecCHH-HccccCcEEEEcCCCCEEeccccC-C--------CCCcceeee
Confidence            998  6678899999888643 33333322332100 001121222234556554332111 1        111123467


Q ss_pred             eeeeechHHHhhC-cCCCCCCCCCccch-hhhhhhhcCCeeEEEEecCCCCCCCCHHHHHHHHHH
Q 027992          146 GIQSYDSNFLKIY-PGLHPTPLQLEEDL-EQLKVLENGYKMKVIKVDHEAHGVDAPEDVEKIESF  208 (215)
Q Consensus       146 ~~~~~~~~~l~~~-~~~~~~~~~~~e~l-~~~~~~~~g~~v~~~~~~~~~idIdt~~Dl~~ae~i  208 (215)
                      +.|+|..+.+.+. .......  ....+ +-.+.+..+.++..+..+....||+|++|+..|+.-
T Consensus       189 Giyi~~~~~l~~~l~~~~~~~--~~~~~~d~i~~~~~~~~v~~~~~~g~w~dIgt~~~l~~a~~~  251 (369)
T TIGR02092       189 DIYIVSTDLLIELLYECIQRG--KLTSLEELIRENLKELNINAYEYTGYLANINSVKSYYKANMD  251 (369)
T ss_pred             eEEEEEHHHHHHHHHHHhhcC--ccccHHHHHHHHhccCcEEEEecCCceeEcCCHHHHHHHHHH
Confidence            7899987654321 1110000  00111 111111125567777766667999999999999843

This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.

>PRK00576 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional

Probab=97.53  E-value=0.00072  Score=51.78  Aligned_cols=75  Identities=13%  Similarity=0.099  Sum_probs=49.5

Q ss_pred             CCCCcEEEEcCcHHHHHHHHHcCCeEEeCCCCCCCchHHHHHHHHHh-cCCCCEEEEecCCCCCCCHHHHHHHHHHHHc
Q 027992            8 FLFCGLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKL-EKKYDIVVNIQGDEPLIEPEIIDGVVKALQA   85 (215)
Q Consensus         8 ~~~d~ivV~td~~~i~~~~~~~g~~v~~~~~~~~~~~~~i~~~l~~~-~~~~d~v~~~~~d~Pli~~~~i~~~i~~~~~   85 (215)
                      ..+++|+|++...+-  . ...++.++.......|.+..+..|+..+ ....|.++++.||+|++++++++++++.+..
T Consensus        27 ~~~~~iivv~~~~~~--~-~~~~~~~i~d~~~g~gpl~~~~~gl~~~~~~~~~~~lv~~~DmP~i~~~~i~~L~~~~~~  102 (178)
T PRK00576         27 QRCAPVFVMAAPGQP--L-PELPAPVLRDELRGLGPLPATGRGLRAAAEAGARLAFVCAVDMPYLTVELIDDLARPAAQ  102 (178)
T ss_pred             hcCCEEEEECCCCcc--c-ccCCCCEeccCCCCCCcHHHHHHHHHHHHhcCCCEEEEEeCCCCCCCHHHHHHHHHHhhc
Confidence            357899999854321  1 2346665532222123344566667654 2356999999999999999999999987654

>PF00483 NTP_transferase: Nucleotidyl transferase This Prosite entry is only a sub-family of the Pfam entry

Probab=97.45  E-value=0.0017  Score=52.09  Aligned_cols=188  Identities=19%  Similarity=0.222  Sum_probs=104.5

Q ss_pred             ccCCCCc-EEEEcC--cHHHHHHHHHc---CCe--EEeCCCCCCCchH-HHHHHHHHhcCC--CCEEEEecCCCCCCCHH
Q 027992            6 HSFLFCG-LVVATD--DEKIAECCQQF---GAD--VIMTSESCRNGTE-RCNEALQKLEKK--YDIVVNIQGDEPLIEPE   74 (215)
Q Consensus         6 ~~~~~d~-ivV~td--~~~i~~~~~~~---g~~--v~~~~~~~~~~~~-~i~~~l~~~~~~--~d~v~~~~~d~Pli~~~   74 (215)
                      ....+++ |+|++.  .+.+.+..+..   +++  ++..+..  .|++ +++.+...+..+  .+.++++.||.-+-.  
T Consensus        42 ~~~g~~~ii~V~~~~~~~~i~~~~~~~~~~~~~i~~i~~~~~--~Gta~al~~a~~~i~~~~~~~~~lv~~gD~i~~~--  117 (248)
T PF00483_consen   42 ANAGIKEIIVVVNGYKEEQIEEHLGSGYKFGVKIEYIVQPEP--LGTAGALLQALDFIEEEDDDEDFLVLNGDIIFDD--  117 (248)
T ss_dssp             HHTTCSEEEEEEETTTHHHHHHHHTTSGGGTEEEEEEEESSS--SCHHHHHHHTHHHHTTSEE-SEEEEETTEEEEST--
T ss_pred             cccCCceEEEEEeecccccccccccccccccccceeeecccc--cchhHHHHHHHHHhhhccccceEEEEeccccccc--
Confidence            4467889 566663  35576666653   323  3444433  3554 677777777432  346999999996555  


Q ss_pred             HHHHHHHHHHc-CCCceEEeecccCCCCccCCCCceEEEEcCCCceecccCCCCCCCCCCCCCCCC-CeeEEeeeeeech
Q 027992           75 IIDGVVKALQA-APDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQF-PYLLHLGIQSYDS  152 (215)
Q Consensus        75 ~i~~~i~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ip~~~~~~~~q~~-p~~~~~~~~~~~~  152 (215)
                      .+..+++.+.+ +.+..+++...+...    .+..-.+..+++|.+.-+-+.  |       +... ..+...+.|+|..
T Consensus       118 ~~~~~l~~~~~~~~~~~~~~~~~~~~~----~~~~g~v~~d~~~~V~~~~EK--P-------~~~~~~~~~~~G~Y~~~~  184 (248)
T PF00483_consen  118 DLQDMLEFHRESNADGTVTLLVVPVED----PSRYGVVEVDEDGRVIRIVEK--P-------DNPNASNLINTGIYIFKP  184 (248)
T ss_dssp             THHHHHHHHHHHSSCESEEEEEEESSG----GGGSEEEEEETTSEEEEEEES--C-------SSHSHSSEEEEEEEEEET
T ss_pred             hhhhHHHhhhccccccccccccccccc----cccceeeeeccceeEEEEecc--C-------cccccceeccCceEEEcc
Confidence            89999999964 333334433333221    111223334666766544322  1       1111 2456778899987


Q ss_pred             HHHhhCcCCCCCCCCCccc-h-hhhh-hhhcCCeeEEEEecC--CCCCCCCHHHHHHHHHHHHh
Q 027992          153 NFLKIYPGLHPTPLQLEED-L-EQLK-VLENGYKMKVIKVDH--EAHGVDAPEDVEKIESFMRE  211 (215)
Q Consensus       153 ~~l~~~~~~~~~~~~~~e~-l-~~~~-~~~~g~~v~~~~~~~--~~idIdt~~Dl~~ae~il~~  211 (215)
                      ..+......... ....+. + +... .+..|..+..+..+.  ..+||.|++|+..|..-+.+
T Consensus       185 ~~~~~~~~~~~~-~~~~~~~l~d~i~~~~~~~~~~~~~~~~~~~~w~dig~~~~~~~a~~~~~~  247 (248)
T PF00483_consen  185 EIFDFLLEMIKE-NARGEDFLTDAIPKLLEQGKKVYAFIFEGNAYWIDIGTPEDYLEANMDLLN  247 (248)
T ss_dssp             HHHHHHHHHHHT-CTTSSHHHHHHHHHHHHTTCEEEEEEHSSEE-EEETSSHHHHHHHHHHHHS
T ss_pred             hHHHHHhhhhhc-cchhhhHHHHHHHHHHHcCCceEEEEecCCeEEEECCCHHHHHHHHHHHhc
Confidence            665543100000 011221 2 2223 344677776767654  57999999999999877653

; InterPro: IPR005835 Nucleotidyl transferases transfer nucleotides from one compound to another. This domain is found in a number of enzymes that transfer nucleotides onto phosphosugars.; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1YP2_C 1YP4_D 1YP3_B 1H5S_D 1H5R_C 1H5T_C 2E3D_B 1JYL_C 1JYK_A 1MP5_C ....

>cd06428 M1P_guanylylT_A_like_N N-terminal domain of M1P_guanylyl_A_ like proteins are likely to be a isoform of GDP-mannose pyrophosphorylase

Probab=97.45  E-value=0.018  Score=46.71  Aligned_cols=186  Identities=11%  Similarity=0.068  Sum_probs=96.9

Q ss_pred             CCCCcEEEEcC--cHHHHHHHHH----cCCeE-EeCCCCCCCchH-HHHHHHHHhcC-CCCEEEEecCCCCCCCHHHHHH
Q 027992            8 FLFCGLVVATD--DEKIAECCQQ----FGADV-IMTSESCRNGTE-RCNEALQKLEK-KYDIVVNIQGDEPLIEPEIIDG   78 (215)
Q Consensus         8 ~~~d~ivV~td--~~~i~~~~~~----~g~~v-~~~~~~~~~~~~-~i~~~l~~~~~-~~d~v~~~~~d~Pli~~~~i~~   78 (215)
                      ..+++|+|++.  .+.+.+....    .|..+ +....+. .|+. .+..+...+.. ..+.++++.||.++  ..++..
T Consensus        45 ~gi~~i~iv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~-~Gt~~al~~a~~~l~~~~~~~~lv~~gD~~~--~~dl~~  121 (257)
T cd06428          45 PDLKEVLLIGFYPESVFSDFISDAQQEFNVPIRYLQEYKP-LGTAGGLYHFRDQILAGNPSAFFVLNADVCC--DFPLQE  121 (257)
T ss_pred             CCCcEEEEEecCCHHHHHHHHHhcccccCceEEEecCCcc-CCcHHHHHHHHHHhhccCCCCEEEEcCCeec--CCCHHH
Confidence            47899999995  3556555542    35554 2222222 2333 46666666532 24668889999985  347999


Q ss_pred             HHHHHHcCCCceEEeecccCCCCccCCCCceEEEEc-CCCceecccCCCCCCCCCCCCCCCCCeeEEeeeeeechHHHhh
Q 027992           79 VVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVD-NHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKI  157 (215)
Q Consensus        79 ~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~ip~~~~~~~~q~~p~~~~~~~~~~~~~~l~~  157 (215)
                      +++.++++ ++.+++...+.... ...+..+ +..+ ++|.+.-+.+.  |       .+........+.|+|+.+.+..
T Consensus       122 ~~~~h~~~-~~~~tl~~~~~~~~-~~~~yg~-v~~d~~~g~v~~~~Ek--p-------~~~~~~~~~~Giyi~~~~~~~~  189 (257)
T cd06428         122 LLEFHKKH-GASGTILGTEASRE-QASNYGC-IVEDPSTGEVLHYVEK--P-------ETFVSDLINCGVYLFSPEIFDT  189 (257)
T ss_pred             HHHHHHHc-CCCEEEEEEEcccc-ccccccE-EEEeCCCCeEEEEEeC--C-------CCcccceEEEEEEEECHHHHHH
Confidence            99988653 23233322232100 0111222 2234 45665433321  1       1111135678889998877644


Q ss_pred             CcCCCCCC---CC--------Ccc---ch--hhhhhhhcCCeeEEEEecCCCCCCCCHHHHHHHHHH
Q 027992          158 YPGLHPTP---LQ--------LEE---DL--EQLKVLENGYKMKVIKVDHEAHGVDAPEDVEKIESF  208 (215)
Q Consensus       158 ~~~~~~~~---~~--------~~e---~l--~~~~~~~~g~~v~~~~~~~~~idIdt~~Dl~~ae~i  208 (215)
                      ........   .+        ..+   .+  +....+-...++..++.+....||.|++++..|.++
T Consensus       190 i~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~~~~~~g~w~dig~~~~~~~a~~~  256 (257)
T cd06428         190 IKKAFQSRQQEAQLGDDNNREGRAEVIRLEQDVLTPLAGSGKLYVYKTDDFWSQIKTAGSAIYANRL  256 (257)
T ss_pred             HhhhccccccccccccccccccccceeeehhhhhhHHhccCCEEEecCCCeeecCCCHHHHHhHhhc
Confidence            33211110   00        000   01  222222123367777777778999999999988764

N-terminal domain of the M1P-guanylyltransferase A-isoform like proteins: The proteins of this family are likely to be a isoform of GDP-mannose pyrophosphorylase. Their sequences are highly conserved with mannose-1-phosphate guanyltransferase, but generally about 40-60 bases longer. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repre

>KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis]

Probab=97.44  E-value=0.0073  Score=50.21  Aligned_cols=184  Identities=16%  Similarity=0.125  Sum_probs=103.4

Q ss_pred             cccccCCCCcEEEEcC--cH-HHH----HHHHHcCCeEEe---CCCCCCCchH-HHHHHHHHhcCCCCEEEEecCCCCCC
Q 027992            3 VMCHSFLFCGLVVATD--DE-KIA----ECCQQFGADVIM---TSESCRNGTE-RCNEALQKLEKKYDIVVNIQGDEPLI   71 (215)
Q Consensus         3 ~a~~~~~~d~ivV~td--~~-~i~----~~~~~~g~~v~~---~~~~~~~~~~-~i~~~l~~~~~~~d~v~~~~~d~Pli   71 (215)
                      .|+...++++|+++|.  ++ -..    ++..++|++++.   .++-+..|.. .++..|... .+. -+++|.+|-=..
T Consensus        48 eal~nsGi~~I~la~~y~s~sl~~~~~k~y~~~lgVei~~s~eteplgtaGpl~laR~~L~~~-~~~-~ffVLnsDvi~~  125 (371)
T KOG1322|consen   48 EALINSGITKIVLATQYNSESLNRHLSKAYGKELGVEILASTETEPLGTAGPLALARDFLWVF-EDA-PFFVLNSDVICR  125 (371)
T ss_pred             HHHHhCCCcEEEEEEecCcHHHHHHHHHHhhhccceEEEEEeccCCCcccchHHHHHHHhhhc-CCC-cEEEecCCeeec
Confidence            4566788999999994  45 233    444446777632   2222222332 233333222 122 466666654333


Q ss_pred             CHHHHHHHHHHHHcCCCceEEeecccCCCCccCCCCceEEEEcC-CCceecccCCCCCCCCCCCCCCCCC-eeEEeeeee
Q 027992           72 EPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDN-HGYAIYFSRGLIPYNKSGKVNPQFP-YLLHLGIQS  149 (215)
Q Consensus        72 ~~~~i~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~ip~~~~~~~~q~~p-~~~~~~~~~  149 (215)
                      =+  +.++++..+.+ ++.+++.+++...    +...-.++.++ .|.+.-|.+.+          |++- -..+.+.|+
T Consensus       126 ~p--~~~~vqfH~~~-gae~TI~~t~vde----pSkyGvv~~d~~~grV~~F~EKP----------kd~vsnkinaGiYi  188 (371)
T KOG1322|consen  126 MP--YKEMVQFHRAH-GAEITIVVTKVDE----PSKYGVVVIDEDTGRVIRFVEKP----------KDLVSNKINAGIYI  188 (371)
T ss_pred             CC--HHHHHHHHHhc-CCceEEEEEeccC----ccccceEEEecCCCceeEehhCc----------hhhhhccccceEEE
Confidence            22  67888887753 5556665667642    11222223345 67776665432          2222 234578899


Q ss_pred             echHHHhhCcCCCCCCCCCccchhhhhhhhcCCeeEEEEecCCCCCCCCHHHHHHHHHHHH
Q 027992          150 YDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAPEDVEKIESFMR  210 (215)
Q Consensus       150 ~~~~~l~~~~~~~~~~~~~~e~l~~~~~~~~g~~v~~~~~~~~~idIdt~~Dl~~ae~il~  210 (215)
                      |+.+.|.+...++ ++.++    |....+..+++++.+.-+..--||-+|.||..+-.++-
T Consensus       189 ~~~~vL~ri~~~p-tSiek----EifP~~a~~~~l~a~~l~gfWmDIGqpkdf~~g~~~Yl  244 (371)
T KOG1322|consen  189 LNPEVLDRILLRP-TSIEK----EIFPAMAEEHQLYAFDLPGFWMDIGQPKDFLTGFSFYL  244 (371)
T ss_pred             ECHHHHhHhhhcc-cchhh----hhhhhhhhcCceEEEecCchhhhcCCHHHHHHHHHHHH
Confidence            9998877655332 33322    22233335678888877777889999999999866653

>PRK10122 GalU regulator GalF; Provisional

Probab=97.43  E-value=0.031  Score=46.56  Aligned_cols=186  Identities=9%  Similarity=0.058  Sum_probs=95.4

Q ss_pred             ccCCCCcEEEEcC--cHHHHHHHH-------------------------HcCCeE-EeCCCCCCCchH-HHHHHHHHhcC
Q 027992            6 HSFLFCGLVVATD--DEKIAECCQ-------------------------QFGADV-IMTSESCRNGTE-RCNEALQKLEK   56 (215)
Q Consensus         6 ~~~~~d~ivV~td--~~~i~~~~~-------------------------~~g~~v-~~~~~~~~~~~~-~i~~~l~~~~~   56 (215)
                      ...++++|+|++.  .+.+.+...                         .+|.++ +....+. -|++ ++.++...+. 
T Consensus        45 ~~~Gi~~i~iv~~~~~~~i~~~~~~~~~l~~~~~~~~k~~~l~~~~~~~~~~~~i~~~~q~~~-lGtg~al~~a~~~l~-  122 (297)
T PRK10122         45 VAAGIKEIVLVTHASKNAVENHFDTSYELESLLEQRVKRQLLAEVQSICPPGVTIMNVRQGQP-LGLGHSILCARPAIG-  122 (297)
T ss_pred             HHCCCCEEEEEcCCChHHHHHHHhcchhHHHHHhhcchhhhHHhhhhccCCCceEEEeecCCc-CchHHHHHHHHHHcC-
Confidence            3456899999994  355554432                         124443 2222222 3444 6788888773 


Q ss_pred             CCCEEEEecCCCCCCCH-------HHHHHHHHHHHcCCCceEEeecccCCCCccCCCCceEEEEc----CCCc---eecc
Q 027992           57 KYDIVVNIQGDEPLIEP-------EIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVD----NHGY---AIYF  122 (215)
Q Consensus        57 ~~d~v~~~~~d~Pli~~-------~~i~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~----~~g~---~~~~  122 (215)
                      +.+ ++++.||. ++++       -++.++++.+.+...+++.+...+ .   ......+ +..+    ++|.   +..|
T Consensus       123 ~~~-fvvi~gD~-l~~~~~~~~~~~dl~~li~~h~~~~~~~~~~~~~~-~---~~~~yGv-v~~d~~~~~~g~v~~I~~~  195 (297)
T PRK10122        123 DNP-FVVVLPDV-VIDDASADPLRYNLAAMIARFNETGRSQVLAKRMP-G---DLSEYSV-IQTKEPLDREGKVSRIVEF  195 (297)
T ss_pred             CCC-EEEEECCe-eccCccccccchhHHHHHHHHHHhCCcEEEEEECC-C---CCCCceE-EEecCcccCCCCeeeEEEE
Confidence            334 45556887 6654       368899988864322332222111 1   1111222 2222    2442   2222


Q ss_pred             cCCCCCCCCCCCCCCCCC-eeEEeeeeeechHHHhhCcCCCCCCCCCccc-h-hhhhhhhcCCeeEEEEecCCCCCCCCH
Q 027992          123 SRGLIPYNKSGKVNPQFP-YLLHLGIQSYDSNFLKIYPGLHPTPLQLEED-L-EQLKVLENGYKMKVIKVDHEAHGVDAP  199 (215)
Q Consensus       123 ~~~~ip~~~~~~~~q~~p-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~-l-~~~~~~~~g~~v~~~~~~~~~idIdt~  199 (215)
                      .+.  |..     ..+.+ .....+.|+|..+.+.......++  ...|. + +....+..+.++..+..+...+||-||
T Consensus       196 ~EK--p~~-----~~~~~s~~~~~GiYi~~~~i~~~l~~~~~~--~~~e~~ltd~i~~l~~~~~v~~~~~~G~w~DiG~p  266 (297)
T PRK10122        196 IEK--PDQ-----PQTLDSDLMAVGRYVLSADIWPELERTEPG--AWGRIQLTDAIAELAKKQSVDAMLMTGDSYDCGKK  266 (297)
T ss_pred             EEC--CCC-----cccCCccEEEEEEEEECHHHHHHHHhCCCC--CCCeeeHHHHHHHHHhCCCEEEEEeCCEEEcCCCH
Confidence            221  110     01111 356788899988766544332211  11221 2 222322234578887777778999999


Q ss_pred             HHHHHHHHHH
Q 027992          200 EDVEKIESFM  209 (215)
Q Consensus       200 ~Dl~~ae~il  209 (215)
                      +|+..|..-+
T Consensus       267 ~~~~~a~~~~  276 (297)
T PRK10122        267 MGYMQAFVKY  276 (297)
T ss_pred             HHHHHHHHHH
Confidence            9999886654

>cd02524 G1P_cytidylyltransferase G1P_cytidylyltransferase catalyzes the production of CDP-D-Glucose

Probab=97.42  E-value=0.019  Score=46.48  Aligned_cols=180  Identities=12%  Similarity=0.101  Sum_probs=97.0

Q ss_pred             ccCCCCcEEEEc--CcHHHHHHHHHc---C--CeEE--------eCCC--CC---------CCch-HHHHHHHHHhcCCC
Q 027992            6 HSFLFCGLVVAT--DDEKIAECCQQF---G--ADVI--------MTSE--SC---------RNGT-ERCNEALQKLEKKY   58 (215)
Q Consensus         6 ~~~~~d~ivV~t--d~~~i~~~~~~~---g--~~v~--------~~~~--~~---------~~~~-~~i~~~l~~~~~~~   58 (215)
                      .+..+++|+|++  ..+.+.+...+.   |  +.+.        .++.  .+         ..++ .++.++...+.. .
T Consensus        40 ~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~al~~a~~~~~~-~  118 (253)
T cd02524          40 SHYGHNDFILCLGYKGHVIKEYFLNYFLHNSDVTIDLGTNRIELHNSDIEDWKVTLVDTGLNTMTGGRLKRVRRYLGD-D  118 (253)
T ss_pred             HhCCCceEEEECCCCHHHHHHHHHhhhhhcCceeEeecccceeeecccccccceeecccCcccccHHHHHHHHHhcCC-C
Confidence            344789999999  457777766542   2  2221        1110  11         1223 257777777632 2


Q ss_pred             CEEEEecCCCCCCCHHHHHHHHHHHHcCCCceEEeecccCCCCccCCCCceEEEEcCCCceecccCCCCCCCCCCCCCCC
Q 027992           59 DIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQ  138 (215)
Q Consensus        59 d~v~~~~~d~Pli~~~~i~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ip~~~~~~~~q~  138 (215)
                      +.++++.||.-+  ...+.++++.+... ++.+++......    .+ ..+ +..+++|.+..+.+.+.  .     .  
T Consensus       119 ~~~lv~~gD~i~--~~dl~~ll~~h~~~-~~~~tl~~~~~~----~~-~g~-v~~d~~g~V~~~~ekp~--~-----~--  180 (253)
T cd02524         119 ETFMLTYGDGVS--DVNINALIEFHRSH-GKLATVTAVHPP----GR-FGE-LDLDDDGQVTSFTEKPQ--G-----D--  180 (253)
T ss_pred             CeEEEEcCCEEE--CCCHHHHHHHHHHc-CCCEEEEEecCC----Cc-ccE-EEECCCCCEEEEEECCC--C-----C--
Confidence            678999999743  45678888877542 333332221110    01 122 22356676654433211  0     0  


Q ss_pred             CCeeEEeeeeeechHHHhhCcCCCCCCCCCccch-hhhh-hhhcCCeeEEEEecCCCCCCCCHHHHHHHHHHHHhh
Q 027992          139 FPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDL-EQLK-VLENGYKMKVIKVDHEAHGVDAPEDVEKIESFMRER  212 (215)
Q Consensus       139 ~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~l-~~~~-~~~~g~~v~~~~~~~~~idIdt~~Dl~~ae~il~~~  212 (215)
                       ......+.|++....+......   .   .... +... ++..| ++..++.+..-.+|+|++|+..|+.+++..
T Consensus       181 -~~~i~~Giyi~~~~l~~~l~~~---~---~~~~~d~l~~li~~~-~v~~~~~~g~w~~I~t~~~~~~~~~~~~~~  248 (253)
T cd02524         181 -GGWINGGFFVLEPEVFDYIDGD---D---TVFEREPLERLAKDG-ELMAYKHTGFWQCMDTLRDKQTLEELWNSG  248 (253)
T ss_pred             -CceEEEEEEEECHHHHHhhccc---c---chhhHHHHHHHHhcC-CEEEEecCCEEEeCcCHHHHHHHHHHHHcC
Confidence             1245567788887765433221   0   1111 2222 22344 566666655789999999999999998654

Alpha-D-Glucose-1-phosphate Cytidylyltransferase catalyzes the production of CDP-D-Glucose from alpha-D-Glucose-1-phosphate and MgCTP as substrate. CDP-D-Glucose is the precursor for synthesizing four of the five naturally occurring 3,6-dideoxy sugars-abequose (3,6-dideoxy-D-Xylo-hexose), ascarylose (3,6-dideoxy-L-arabino-hexose), paratose (3,6-dideoxy-D-ribohexose), and tyvelose (3,6-dideoxy-D-arabino-hexose. Deoxysugars are ubiquitous in nature where they function in a variety of biological processes, including cell adhesion, immune response, determination of ABO blood groups, fertilization, antibiotic function, and microbial pathogenicity.

>COG1209 RfbA dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]

Probab=97.39  E-value=0.039  Score=44.90  Aligned_cols=182  Identities=19%  Similarity=0.256  Sum_probs=108.6

Q ss_pred             cCCCCcEEEEcCc---HHHHHHH---HHcCCeE--EeCCCCCCCchH-HHHHHHHHhcCCCCEEEEecCCCCCCCHHHHH
Q 027992            7 SFLFCGLVVATDD---EKIAECC---QQFGADV--IMTSESCRNGTE-RCNEALQKLEKKYDIVVNIQGDEPLIEPEIID   77 (215)
Q Consensus         7 ~~~~d~ivV~td~---~~i~~~~---~~~g~~v--~~~~~~~~~~~~-~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~   77 (215)
                      ...|++|.|++..   +.++++.   +++|+.+  ...+..  .|.+ .+.-|-..+  +.|-++++.||+=|..  .+.
T Consensus        43 ~aGI~dI~II~~~~~~~~~~~llGdgs~~gv~itY~~Q~~p--~GlA~Av~~a~~fv--~~~~f~l~LGDNi~~~--~l~  116 (286)
T COG1209          43 LAGIRDILIVVGPEDKPTFKELLGDGSDFGVDITYAVQPEP--DGLAHAVLIAEDFV--GDDDFVLYLGDNIFQD--GLS  116 (286)
T ss_pred             HcCCceEEEEecCCchhhhhhhhcCccccCcceEEEecCCC--CcHHHHHHHHHhhc--CCCceEEEecCceecc--ChH
Confidence            3568888777743   4555543   3367665  334433  5655 444444444  4467888999999988  899


Q ss_pred             HHHHHHHc-CCCceEEeecccCCCCccCCCCceEEE-EcCCCceecccCCCCCCCCCCCCCCCCC-eeEEeeeeeechHH
Q 027992           78 GVVKALQA-APDAVFSTAVTSLKPEDAFDPNRVKCV-VDNHGYAIYFSRGLIPYNKSGKVNPQFP-YLLHLGIQSYDSNF  154 (215)
Q Consensus        78 ~~i~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~ip~~~~~~~~q~~p-~~~~~~~~~~~~~~  154 (215)
                      +.++.+.+ ..++.+-.  .++.     +|.+.-++ .+++|++.-..+.  |        ++-| -+-..+.|+|....
T Consensus       117 ~~~~~~~~~~~ga~i~~--~~V~-----dP~rfGV~e~d~~~~v~~l~EK--P--------~~P~SNlAvtGlY~~d~~V  179 (286)
T COG1209         117 ELLEHFAEEGSGATILL--YEVD-----DPSRYGVVEFDEDGKVIGLEEK--P--------KEPKSNLAVTGLYFYDPSV  179 (286)
T ss_pred             HHHHHHhccCCCcEEEE--EEcC-----CcccceEEEEcCCCcEEEeEEC--C--------CCCCCceeEEEEEEeChHH
Confidence            99998864 44544442  3442     45554333 4656665433222  1        1111 23456679998766


Q ss_pred             HhhCcCCCCCCCCCccchhhhh-hhhcCCeeEEEEecCCCCCCCCHHHHHHHHHHHHh
Q 027992          155 LKIYPGLHPTPLQLEEDLEQLK-VLENGYKMKVIKVDHEAHGVDAPEDVEKIESFMRE  211 (215)
Q Consensus       155 l~~~~~~~~~~~~~~e~l~~~~-~~~~g~~v~~~~~~~~~idIdt~~Dl~~ae~il~~  211 (215)
                      +.....+.++.=...|-++-.. .++.|..+...++...-+|.-|++|+.-|..++..
T Consensus       180 f~~~~~ikPS~RGElEITd~i~~~i~~G~~~~~~~~~G~WlDtGt~~slleA~~~i~~  237 (286)
T COG1209         180 FEAIKQIKPSARGELEITDAIDLYIEKGYLVVAILIRGWWLDTGTPESLLEANNFVRT  237 (286)
T ss_pred             HHHHHcCCCCCCCceEehHHHHHHHHcCcEEEEEEccceEEecCChhhHHHHHHHHHH
Confidence            5544444333211122234333 55689888777776688999999999999988754

>cd02523 PC_cytidylyltransferase Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline

Probab=97.32  E-value=0.0033  Score=49.95  Aligned_cols=69  Identities=16%  Similarity=0.210  Sum_probs=44.7

Q ss_pred             cCCCCcEEEEcC--cHHHHHHHHH-cCCeEEeCCCCCCCch-HHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHH
Q 027992            7 SFLFCGLVVATD--DEKIAECCQQ-FGADVIMTSESCRNGT-ERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGV   79 (215)
Q Consensus         7 ~~~~d~ivV~td--~~~i~~~~~~-~g~~v~~~~~~~~~~~-~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~   79 (215)
                      ...+++|+|++.  .+.+.+.... .|+.++..+..-..|+ .++..++..+   .+.++++.||.++ +++.++.+
T Consensus        41 ~~gi~~i~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~---~~~~lv~~~D~~~-~~~~~~~~  113 (229)
T cd02523          41 EAGIDDIVIVTGYKKEQIEELLKKYPNIKFVYNPDYAETNNIYSLYLARDFL---DEDFLLLEGDVVF-DPSILERL  113 (229)
T ss_pred             HCCCceEEEEeccCHHHHHHHHhccCCeEEEeCcchhhhCcHHHHHHHHHHc---CCCEEEEeCCEec-CHHHHHHH
Confidence            346899999995  4566666655 4666655443212343 4677777776   3678999999986 66555443

This family contains proteins similar to prokaryotic phosphocholine (P-cho) cytidylyltransferases. Phosphocholine (PC) cytidylyltransferases catalyze the transfer of a cytidine monophosphate from CTP to phosphocholine to form CDP-choline. PC is the most abundant phospholipid in eukaryotic membranes and it is also important in prokaryotic membranes. For pathogenic prokaryotes, the cell surface PC facilitates the interaction with host surface and induces attachment and invasion. In addition cell wall PC serves as scaffold for a group of choline-binding proteins that are secreted from the cells. Phosphocholine (PC) cytidylyltransferase is a key enzyme in the prokaryotic choline metabolism pathway. It has been hypothesized to consist of a choline transport system, a choline kinase, CTP:phosphocholine cytidylyltransferase, and a choline phosphotransferase that transfers P-Cho from CDP

>PRK13389 UTP--glucose-1-phosphate uridylyltransferase subunit GalU; Provisional

Probab=97.31  E-value=0.037  Score=46.19  Aligned_cols=151  Identities=10%  Similarity=0.056  Sum_probs=78.4

Q ss_pred             CchH-HHHHHHHHhcCCCCEEEEecCCCCC------CCHHHHHHHHHHHHcCCCceEEeecccCCCCccCCCCceEEEEc
Q 027992           42 NGTE-RCNEALQKLEKKYDIVVNIQGDEPL------IEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVD  114 (215)
Q Consensus        42 ~~~~-~i~~~l~~~~~~~d~v~~~~~d~Pl------i~~~~i~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  114 (215)
                      .|+. .+..+...+.  .+-++++.||.++      ++..++.++++.+.+.....+.+  .+..   ......+ +..+
T Consensus       113 ~Gtg~Av~~a~~~~~--~~~~lVl~gD~~~~~~~~~~~~~dl~~l~~~h~~~~~~tl~~--~~~~---~~~~yGv-v~~~  184 (302)
T PRK13389        113 KGLGHAVLCAHPVVG--DEPVAVILPDVILDEYESDLSQDNLAEMIRRFDETGHSQIMV--EPVA---DVTAYGV-VDCK  184 (302)
T ss_pred             CChHHHHHHHHHHcC--CCCEEEEeCcceecccccccccccHHHHHHHHHhcCCCEEEE--EEcc---cCCcceE-EEec
Confidence            3443 4666666552  2457888999997      46688999999886432333332  2321   0111222 2222


Q ss_pred             C-------CCceecccCCCCCCCCCCCCCCCCCeeEEeeeeeechHHHhhCcCCCCCCCCCccc-h-hhhhhhhcCCeeE
Q 027992          115 N-------HGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEED-L-EQLKVLENGYKMK  185 (215)
Q Consensus       115 ~-------~g~~~~~~~~~ip~~~~~~~~q~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~-l-~~~~~~~~g~~v~  185 (215)
                      +       +|.+..+.+.  |..     .+......+.+.|+|....+........+  ...|. + +....+..+.++.
T Consensus       185 ~~~~~~~~~~~V~~~~EK--p~~-----~~~~s~~~~~GiYi~~~~il~~l~~~~~~--~~~e~~l~d~i~~l~~~~~v~  255 (302)
T PRK13389        185 GVELAPGESVPMVGVVEK--PKA-----DVAPSNLAIVGRYVLSADIWPLLAKTPPG--AGDEIQLTDAIDMLIEKETVE  255 (302)
T ss_pred             CcccccCCcceEEEEEEC--CCC-----CCCCccEEEEEEEEECHHHHHHHHhCCCC--CCCeeeHHHHHHHHHHcCCEE
Confidence            1       2233333221  100     00001346778899987765433322211  11222 2 2222222334677


Q ss_pred             EEEecCCCCCCCCHHHHHHHHHHH
Q 027992          186 VIKVDHEAHGVDAPEDVEKIESFM  209 (215)
Q Consensus       186 ~~~~~~~~idIdt~~Dl~~ae~il  209 (215)
                      .+..+...+||.||+|+..|...+
T Consensus       256 ~~~~~G~w~DIGtpe~~~~a~~~~  279 (302)
T PRK13389        256 AYHMKGKSHDCGNKLGYMQAFVEY  279 (302)
T ss_pred             EEEeeeEEEeCCCHHHHHHHHHHH
Confidence            777766789999999999885554

>TIGR02091 glgC glucose-1-phosphate adenylyltransferase

Probab=97.30  E-value=0.022  Score=48.51  Aligned_cols=196  Identities=14%  Similarity=0.113  Sum_probs=99.6

Q ss_pred             ccCCCCcEEEEcC--cHHHHHHHHH-cC--------CeEEe-----CCCCCCCch-HHHHHHHHHhc-CCCCEEEEecCC
Q 027992            6 HSFLFCGLVVATD--DEKIAECCQQ-FG--------ADVIM-----TSESCRNGT-ERCNEALQKLE-KKYDIVVNIQGD   67 (215)
Q Consensus         6 ~~~~~d~ivV~td--~~~i~~~~~~-~g--------~~v~~-----~~~~~~~~~-~~i~~~l~~~~-~~~d~v~~~~~d   67 (215)
                      ....+++|+|++.  .+++.+...+ ++        ++++.     ...+...|+ .+++.++..+. ...+.++++.||
T Consensus        41 ~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~al~~a~~~~~~~~~~~~lv~~gD  120 (361)
T TIGR02091        41 INSGIRRIGVLTQYKSHSLNRHIQRGWDFDGFIDGFVTLLPAQQRESGTDWYQGTADAVYQNLDLIEDYDPEYVLILSGD  120 (361)
T ss_pred             hhcCCceEEEEeccChHHHHHHHHhccCccCccCCCEEEeCCcccCCCCccccCcHHHHHHHHHHHHhcCCCEEEEecCC
Confidence            3456899999995  4667666542 22        12211     011112344 46777777763 234779999999


Q ss_pred             CCCCCHHHHHHHHHHHHcC-CCceEEeecccCCCCccCCCCce-EEEEcCCCceecccCCCCCCCCCCCCCCCCCeeEEe
Q 027992           68 EPLIEPEIIDGVVKALQAA-PDAVFSTAVTSLKPEDAFDPNRV-KCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHL  145 (215)
Q Consensus        68 ~Pli~~~~i~~~i~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~ip~~~~~~~~q~~p~~~~~  145 (215)
                      .  +....+.++++.++.. .+..+.+...+..     ++... .+..+++|.+..|.+.+.. ..+. ..++--.....
T Consensus       121 ~--l~~~~l~~~l~~~~~~~~~~ti~~~~~~~~-----~~~~~g~v~~d~~~~v~~~~ekp~~-~~~~-~~~~~~~~~~~  191 (361)
T TIGR02091       121 H--IYKMDYEKMLDYHIESGADVTIACIPVPRK-----EASRFGVMQVDEDGRIVDFEEKPAN-PPSI-PGMPDFALASM  191 (361)
T ss_pred             E--EEcCCHHHHHHHHHHcCCCEEEEEEecChH-----hcccccEEEECCCCCEEEEEECCCC-cccc-cccccccEEee
Confidence            8  4566788999887643 2333332212111     11111 2233555655444322110 0000 00100124567


Q ss_pred             eeeeechHHHhhC-cCCCCCCCCCccch--hhhhhhhcCCeeEEEEecCCCCCCCCHHHHHHHHHHHHh
Q 027992          146 GIQSYDSNFLKIY-PGLHPTPLQLEEDL--EQLKVLENGYKMKVIKVDHEAHGVDAPEDVEKIESFMRE  211 (215)
Q Consensus       146 ~~~~~~~~~l~~~-~~~~~~~~~~~e~l--~~~~~~~~g~~v~~~~~~~~~idIdt~~Dl~~ae~il~~  211 (215)
                      +.|+|....+..+ ....... ....++  +....+-...++..+..+....||+|++|+..|...+..
T Consensus       192 Giyi~~~~~l~~~l~~~~~~~-~~~~~~~~d~l~~l~~~~~v~~~~~~~~w~digt~~~~~~a~~~~l~  259 (361)
T TIGR02091       192 GIYIFDKDVLKELLEEDADDP-ESSHDFGKDIIPRALEEGSVQAYLFSGYWRDVGTIDSFWEANMDLVS  259 (361)
T ss_pred             eEEEEcHHHHHHHHHHHhhcC-CcccccHHHHHHHHhhcCceEEEeeCCEEEECCCHHHHHHHHHHHhC
Confidence            7899987765322 1110000 000111  122222123377777766668899999999999776643

This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.

>TIGR02623 G1P_cyt_trans glucose-1-phosphate cytidylyltransferase

Probab=97.27  E-value=0.033  Score=45.13  Aligned_cols=178  Identities=12%  Similarity=0.109  Sum_probs=96.9

Q ss_pred             cCCCCcEEEEcC--cHHHHHHHHHc-----CCeEEeCC-------------------CCCCCchH-HHHHHHHHhcCCCC
Q 027992            7 SFLFCGLVVATD--DEKIAECCQQF-----GADVIMTS-------------------ESCRNGTE-RCNEALQKLEKKYD   59 (215)
Q Consensus         7 ~~~~d~ivV~td--~~~i~~~~~~~-----g~~v~~~~-------------------~~~~~~~~-~i~~~l~~~~~~~d   59 (215)
                      ...+++|+|++.  .+.+.+.....     +.++....                   .....|+. +++++...+.  .+
T Consensus        42 ~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~al~~~~~~i~--~e  119 (254)
T TIGR02623        42 HHGINDFIICCGYKGYVIKEYFANYFLHMSDVTFHMADNTMEVHHKRVEPWRVTLVDTGESTQTGGRLKRVREYLD--DE  119 (254)
T ss_pred             HCCCCEEEEEcCCCHHHHHHHHHhhhhcccCeeEEecccccccccccCCccceeeeecCCcCCcHHHHHHHHHhcC--CC
Confidence            347999999995  45666665442     22221100                   00113443 5677777663  45


Q ss_pred             EEEEecCCCCCCCHHHHHHHHHHHHcCCCceEEeecccCCCCccCCCCceEEEEcCCCceecccCCCCCCCCCCCCCCCC
Q 027992           60 IVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQF  139 (215)
Q Consensus        60 ~v~~~~~d~Pli~~~~i~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ip~~~~~~~~q~~  139 (215)
                      .++++.||.  +...++.++++.+.+. ++.+++...+.    ... ..+ +..+ +|.+..|.+.  |.      ..  
T Consensus       120 ~flv~~gD~--i~~~dl~~~~~~h~~~-~~d~tl~~~~~----~~~-yG~-v~~d-~~~V~~~~Ek--p~------~~--  179 (254)
T TIGR02623       120 AFCFTYGDG--VADIDIKALIAFHRKH-GKKATVTAVQP----PGR-FGA-LDLE-GEQVTSFQEK--PL------GD--  179 (254)
T ss_pred             eEEEEeCCe--EecCCHHHHHHHHHHc-CCCEEEEEecC----CCc-ccE-EEEC-CCeEEEEEeC--CC------CC--
Confidence            688999997  4567899999887542 33333222211    011 122 2234 3454434332  10      01  


Q ss_pred             CeeEEeeeeeechHHHhhCcCCCCCCCCCccchhhhh-hhhcCCeeEEEEecCCCCCCCCHHHHHHHHHHHHhh
Q 027992          140 PYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLK-VLENGYKMKVIKVDHEAHGVDAPEDVEKIESFMRER  212 (215)
Q Consensus       140 p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~l~~~~-~~~~g~~v~~~~~~~~~idIdt~~Dl~~ae~il~~~  212 (215)
                      ......+.|+|..+.+....... ...  .  .+... .+..| ++..++.+..-.||+|++|++.|+..++..
T Consensus       180 ~~~i~~Giyi~~~~il~~l~~~~-~~~--~--~d~i~~l~~~~-~v~~~~~~g~w~dIgt~~~~~~~~~~~~~~  247 (254)
T TIGR02623       180 GGWINGGFFVLNPSVLDLIDGDA-TVW--E--QEPLETLAQRG-ELSAYEHSGFWQPMDTLRDKNYLEELWESG  247 (254)
T ss_pred             CCeEEEEEEEEcHHHHhhccccC-chh--h--hhHHHHHHhCC-CEEEEeCCCEEecCCchHHHHHHHHHHHcC
Confidence            13456788999887764322110 000  0  11222 22244 577777666789999999999999988753

Members of this family are the enzyme glucose-1-phosphate cytidylyltransferase, also called CDP-glucose pyrophosphorylase, the product of the rfbF gene.

>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional

Probab=97.19  E-value=0.02  Score=49.17  Aligned_cols=190  Identities=16%  Similarity=0.155  Sum_probs=100.4

Q ss_pred             ccccCCCCcEEEEcC--cHHHHHHHHH---cC-------CeEE---eCCCC--CCCch-HHHHHHHHHhcC-CCCEEEEe
Q 027992            4 MCHSFLFCGLVVATD--DEKIAECCQQ---FG-------ADVI---MTSES--CRNGT-ERCNEALQKLEK-KYDIVVNI   64 (215)
Q Consensus         4 a~~~~~~d~ivV~td--~~~i~~~~~~---~g-------~~v~---~~~~~--~~~~~-~~i~~~l~~~~~-~~d~v~~~   64 (215)
                      ++....+++|+|+|.  .+.+.+....   ++       +.++   ....+  +..|+ .+++.++..+.. ..|.++++
T Consensus        44 ~l~~~Gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~lV~  123 (380)
T PRK05293         44 NCANSGIDTVGVLTQYQPLELNNHIGIGSPWDLDRINGGVTILPPYSESEGGKWYKGTAHAIYQNIDYIDQYDPEYVLIL  123 (380)
T ss_pred             HHHhCCCCEEEEEecCCHHHHHHHHhCCCcccccCCCCCEEEeCCcccCCCCcccCCcHHHHHHHHHHHHhCCCCEEEEe
Confidence            344567999999995  4666666532   22       1221   11111  11344 367777777632 24789999


Q ss_pred             cCCCCCCCHHHHHHHHHHHHc-CCCceEEeecccCCCCccCCCCce-EEEEcCCCceecccCCCCCCCCCCCCCCCCCee
Q 027992           65 QGDEPLIEPEIIDGVVKALQA-APDAVFSTAVTSLKPEDAFDPNRV-KCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYL  142 (215)
Q Consensus        65 ~~d~Pli~~~~i~~~i~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~ip~~~~~~~~q~~p~~  142 (215)
                      .||.  +...++.++++.+.+ +.+..+.+...+..     +|... .+..+++|.+..|.+.  |.       +.-...
T Consensus       124 ~gD~--l~~~d~~~ll~~h~~~~~~~tl~~~~~~~~-----~~~~yG~v~~d~~g~V~~~~eK--p~-------~~~~~~  187 (380)
T PRK05293        124 SGDH--IYKMDYDKMLDYHKEKEADVTIAVIEVPWE-----EASRFGIMNTDENMRIVEFEEK--PK-------NPKSNL  187 (380)
T ss_pred             cCCE--EEcCCHHHHHHHHHhcCCCEEEEEEEcchh-----hccccCEEEECCCCcEEEEEeC--CC-------CCCcce
Confidence            9997  556688899888754 33332332111111     11221 1223555665444322  10       110134


Q ss_pred             EEeeeeeechHHHhhC-cCCCCCCCCCccch-hhhh-hhhcCCeeEEEEecCCCCCCCCHHHHHHHHHHH
Q 027992          143 LHLGIQSYDSNFLKIY-PGLHPTPLQLEEDL-EQLK-VLENGYKMKVIKVDHEAHGVDAPEDVEKIESFM  209 (215)
Q Consensus       143 ~~~~~~~~~~~~l~~~-~~~~~~~~~~~e~l-~~~~-~~~~g~~v~~~~~~~~~idIdt~~Dl~~ae~il  209 (215)
                      ...+.|+|..+.+..+ .............. +... .++.|.++..++.+....||+|++|+..|...+
T Consensus       188 ~~~Giyi~~~~~l~~~l~~~~~~~~~~~~~~~d~i~~l~~~~~~v~~~~~~g~w~digt~~~~~~a~~~~  257 (380)
T PRK05293        188 ASMGIYIFNWKRLKEYLIEDEKNPNSSHDFGKNVIPLYLEEGEKLYAYPFKGYWKDVGTIESLWEANMEL  257 (380)
T ss_pred             eeeEEEEEcHHHHHHHHHHHhhcCCchhhhHHHHHHHHhhcCCeEEEEEeCCEEEeCCCHHHHHHHHHHH
Confidence            5677899987655432 11100000111111 2222 233577888887766789999999999998544

>COG0746 MobA Molybdopterin-guanine dinucleotide biosynthesis protein A [Coenzyme metabolism]

Probab=97.18  E-value=0.0048  Score=48.06  Aligned_cols=76  Identities=17%  Similarity=0.266  Sum_probs=53.1

Q ss_pred             CCCCcEEEEcCcHHHHHHHHHcCCeEEeCCCCCCCchHHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHHHHcCC
Q 027992            8 FLFCGLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAP   87 (215)
Q Consensus         8 ~~~d~ivV~td~~~i~~~~~~~g~~v~~~~~~~~~~~~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~~~~~~   87 (215)
                      +.++.++|+..... .. ...+|+.++.-.....|..+.+..|++..  ..+.++++.||+||++++.++.++..+....
T Consensus        41 ~~~~~vvi~~~~~~-~~-~~~~g~~vv~D~~~~~GPL~Gi~~al~~~--~~~~~~v~~~D~P~i~~~lv~~l~~~~~~~~  116 (192)
T COG0746          41 PQVDVVVISANRNQ-GR-YAEFGLPVVPDELPGFGPLAGILAALRHF--GTEWVLVLPCDMPFIPPELVERLLSAFKQTG  116 (192)
T ss_pred             ccCCEEEEeCCCch-hh-hhccCCceeecCCCCCCCHHHHHHHHHhC--CCCeEEEEecCCCCCCHHHHHHHHHhhcccC
Confidence            44554555554322 12 45578887642222225577889999987  4789999999999999999999999986543

>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional

Probab=97.16  E-value=0.0041  Score=53.30  Aligned_cols=73  Identities=12%  Similarity=0.196  Sum_probs=48.2

Q ss_pred             CCCcEEEEcCc-H-HHHHHHHHcCCeEEeCCCC-CCCchHHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHHHHc
Q 027992            9 LFCGLVVATDD-E-KIAECCQQFGADVIMTSES-CRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA   85 (215)
Q Consensus         9 ~~d~ivV~td~-~-~i~~~~~~~g~~v~~~~~~-~~~~~~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~~~~   85 (215)
                      .+++|+|++.. . .+.....  +..++..... ..|..++++.|+..+  +.|.++++.||+||++++.|+++++.+..
T Consensus        45 ~~~~iivvv~~~~~~~~~~~~--~~~~i~d~~~g~~G~~~si~~gl~~~--~~~~vlv~~~D~P~i~~~~i~~L~~~~~~  120 (366)
T PRK14489         45 QFARIHLNINRDPARYQDLFP--GLPVYPDILPGFQGPLSGILAGLEHA--DSEYLFVVACDTPFLPENLVKRLSKALAI  120 (366)
T ss_pred             hCCEEEEEcCCCHHHHHhhcc--CCcEEecCCCCCCChHHHHHHHHHhc--CCCcEEEeeCCcCCCCHHHHHHHHHHhhc
Confidence            47888886643 2 2222111  3344322211 123345788998876  46889999999999999999999998754

>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional

Probab=97.02  E-value=0.044  Score=47.97  Aligned_cols=196  Identities=17%  Similarity=0.137  Sum_probs=102.8

Q ss_pred             ccCCCCcEEEEcC--cHHHHHHHHH-c-------CCeEEeCCC------CCCCch-HHHHHHHHHhcC-CCCEEEEecCC
Q 027992            6 HSFLFCGLVVATD--DEKIAECCQQ-F-------GADVIMTSE------SCRNGT-ERCNEALQKLEK-KYDIVVNIQGD   67 (215)
Q Consensus         6 ~~~~~d~ivV~td--~~~i~~~~~~-~-------g~~v~~~~~------~~~~~~-~~i~~~l~~~~~-~~d~v~~~~~d   67 (215)
                      ....+++|+|+|.  .+.+.+.... +       |...+..+.      ....|+ .+++.++..+.. ..+.++++.||
T Consensus        46 ~~~Gi~~vivv~~~~~~~i~~~l~~~~~~~~~~~g~~~i~~~~~~~~~~~~~lGTa~al~~a~~~l~~~~~~~~lVl~gD  125 (429)
T PRK02862         46 INSGINKIYVLTQFNSASLNRHISQTYNFDGFSGGFVEVLAAQQTPENPSWFQGTADAVRKYLWHFQEWDVDEYLILSGD  125 (429)
T ss_pred             HHCCCCEEEEEecCCHHHHHHHHhcCcCccccCCCEEEEeCCcccCCCCccccCcHHHHHHHHHHHHhcCCCEEEEecCC
Confidence            4467899999995  4667776643 1       111121111      111344 357777776632 24679999999


Q ss_pred             CCCCCHHHHHHHHHHHHcCCCceEEeecccCCCCccCCCCce-EEEEcCCCceecccCCCCCCCC-------C---CCCC
Q 027992           68 EPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRV-KCVVDNHGYAIYFSRGLIPYNK-------S---GKVN  136 (215)
Q Consensus        68 ~Pli~~~~i~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~ip~~~-------~---~~~~  136 (215)
                      . +. ..++.++++.+++. ++.+++...+...   .++... .+..+++|.+..|.+.+-+...       +   ....
T Consensus       126 ~-l~-~~dl~~ll~~h~~~-~a~~tl~~~~~~~---~~~~~yG~i~~d~~g~V~~~~Ekp~~~~~~~~~~~~s~~~~~~~  199 (429)
T PRK02862        126 Q-LY-RMDYRLFVQHHRET-GADITLAVLPVDE---KDASGFGLMKTDDDGRITEFSEKPKGDELKAMAVDTSRLGLSPE  199 (429)
T ss_pred             E-EE-eCCHHHHHHHHHHc-CCCEEEEEEecCh---hhcccceEEEECCCCcEEEEEECCCccccchhcccccccccccc
Confidence            9 44 56888999888653 3333332222210   111121 2234556665544332111000       0   0000


Q ss_pred             CC--CCeeEEeeeeeechHHHhhC-cCCCCCCCCCccchhhhhhhhcCCeeEEEEecCCCCCCCCHHHHHHHHHHHH
Q 027992          137 PQ--FPYLLHLGIQSYDSNFLKIY-PGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAPEDVEKIESFMR  210 (215)
Q Consensus       137 q~--~p~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~e~l~~~~~~~~g~~v~~~~~~~~~idIdt~~Dl~~ae~il~  210 (215)
                      +.  .....+.+.|+|..+.|..+ .... +.....+  +....+..+.++..++.+....||.|++++..|...+.
T Consensus       200 ~~~~~~~~~n~Giyi~~~~vl~~~l~~~~-~~~~~~~--dil~~l~~~~~v~~~~~~g~w~digt~~~y~~an~~l~  273 (429)
T PRK02862        200 EAKGKPYLASMGIYVFSRDVLFDLLNKNP-EYTDFGK--EIIPEAIRDYKVQSYLFDGYWEDIGTIEAFYEANLALT  273 (429)
T ss_pred             cCCCCceEEEEEEEEEcHHHHHHHHHHCC-ChhhhHH--HHHHHHhccCcEEEEEeCCEEEeCCCHHHHHHHHHHHH
Confidence            11  11345677899988776543 2211 1111111  11222225667888877667899999999999976654

>cd04183 GT2_BcE_like GT2_BcbE_like is likely involved in the biosynthesis of the polysaccharide capsule

Probab=96.89  E-value=0.061  Score=42.61  Aligned_cols=174  Identities=17%  Similarity=0.186  Sum_probs=87.1

Q ss_pred             CCCCcEEEEcCcHHH-----HHHHHH--cCCeEEeCCCCCCCch-HHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHH
Q 027992            8 FLFCGLVVATDDEKI-----AECCQQ--FGADVIMTSESCRNGT-ERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGV   79 (215)
Q Consensus         8 ~~~d~ivV~td~~~i-----~~~~~~--~g~~v~~~~~~~~~~~-~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~   79 (215)
                      ..+++++|++..+..     .+..+.  .++.++..+.. ..|+ .++..|...+. ..+.++++.||. +.+ ..+.++
T Consensus        42 ~g~~~ivvv~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~g~~~~l~~a~~~l~-~~~~~lv~~~D~-i~~-~~~~~~  117 (231)
T cd04183          42 IFDSRFIFICRDEHNTKFHLDESLKLLAPNATVVELDGE-TLGAACTVLLAADLID-NDDPLLIFNCDQ-IVE-SDLLAF  117 (231)
T ss_pred             cCCceEEEEEChHHhhhhhHHHHHHHhCCCCEEEEeCCC-CCcHHHHHHHHHhhcC-CCCCEEEEecce-eec-cCHHHH
Confidence            348899999864332     222222  24555434433 2344 46777777663 235688899998 444 456677


Q ss_pred             HHHHHc-CCCceEEeecccCCCCccCCCCceEEEEcCCCceecccCCCCCCCCCCCCCCCCCeeEEeeeeeechH-HHhh
Q 027992           80 VKALQA-APDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSN-FLKI  157 (215)
Q Consensus        80 i~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ip~~~~~~~~q~~p~~~~~~~~~~~~~-~l~~  157 (215)
                      +..+.+ ..++.+.+  .+..     ++....+..+++|.+..+.+..          . .......+.|+|... .+..
T Consensus       118 ~~~~~~~~~~~~i~~--~~~~-----~~~~~~v~~d~~~~v~~~~ek~----------~-~~~~~~~Giy~~~~~~~~~~  179 (231)
T cd04183         118 LAAFRERDLDGGVLT--FFSS-----HPRWSYVKLDENGRVIETAEKE----------P-ISDLATAGLYYFKSGSLFVE  179 (231)
T ss_pred             HHHhhccCCceEEEE--EeCC-----CCCeEEEEECCCCCEEEeEEcC----------C-CCCccEeEEEEECcHHHHHH
Confidence            776643 22332222  1211     1122333345666554221110          0 012456678888764 3221


Q ss_pred             -CcC-CCCCCCCCcc-ch-hhhh-hhhcCCeeEEEEe-cCCCCCCCCHHHHH
Q 027992          158 -YPG-LHPTPLQLEE-DL-EQLK-VLENGYKMKVIKV-DHEAHGVDAPEDVE  203 (215)
Q Consensus       158 -~~~-~~~~~~~~~e-~l-~~~~-~~~~g~~v~~~~~-~~~~idIdt~~Dl~  203 (215)
                       ... .........+ ++ +... .+..|.++..+.. +....||+|++|++
T Consensus       180 ~l~~~~~~~~~~~~~~~~~d~i~~~~~~g~~v~~~~~~~~~w~di~t~~dl~  231 (231)
T cd04183         180 AAKKMIRKDDSVNGEFYISPLYNELILDGKKVGIYLIDKDDYHSFGTPEDLE  231 (231)
T ss_pred             HHHHHHhhcccccCcEEEhHHHHHHHHcCCEEEEEEeccccEEEcCChHhcC
Confidence             111 0000001111 11 2222 3346778988887 57789999999974

GT2_BcbE_like: The bcbE gene is one of the genes in the capsule biosynthetic locus of Pasteurella multocida. Its deducted product is likely involved in the biosynthesis of the polysaccharide capsule, which is found on surface of a wide range of bacteria. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.

>cd04181 NTP_transferase NTP_transferases catalyze the transfer of nucleotides onto phosphosugars

Probab=96.71  E-value=0.13  Score=39.99  Aligned_cols=129  Identities=17%  Similarity=0.202  Sum_probs=71.8

Q ss_pred             CCCCcEEEEcC--cHHHHHHHHH---cCCeE-EeCCCCCCCch-HHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHH
Q 027992            8 FLFCGLVVATD--DEKIAECCQQ---FGADV-IMTSESCRNGT-ERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVV   80 (215)
Q Consensus         8 ~~~d~ivV~td--~~~i~~~~~~---~g~~v-~~~~~~~~~~~-~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i   80 (215)
                      ..+++|+|+|.  .+.+.+.+..   +|..+ +...... .|+ .+++.++..+  ..+.++++.||.-+  ..++.+++
T Consensus        42 ~g~~~i~vv~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~-~g~~~al~~~~~~~--~~~~~lv~~~D~~~--~~~~~~~~  116 (217)
T cd04181          42 AGIDEIILVVGYLGEQIEEYFGDGSKFGVNIEYVVQEEP-LGTAGAVRNAEDFL--GDDDFLVVNGDVLT--DLDLSELL  116 (217)
T ss_pred             CCCCEEEEEeccCHHHHHHHHcChhhcCceEEEEeCCCC-CccHHHHHHhhhhc--CCCCEEEEECCeec--CcCHHHHH
Confidence            34899999996  4666666554   35554 2222222 344 5678888777  45779999999843  44578888


Q ss_pred             HHHHc-CCCceEEeecccCCCCccCCCCceEEEEcCCCceecccCCCCCCCCCCCCCCCCCeeEEeeeeeechHHHh
Q 027992           81 KALQA-APDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLK  156 (215)
Q Consensus        81 ~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ip~~~~~~~~q~~p~~~~~~~~~~~~~~l~  156 (215)
                      +.+.. +.+..+.+  .+...    ......+..+++|.+..+.+.+.         .........+.|+|...++.
T Consensus       117 ~~~~~~~~~~~~~~--~~~~~----~~~~~~v~~d~~~~v~~~~ek~~---------~~~~~~~~~Giy~~~~~~~~  178 (217)
T cd04181         117 RFHREKGADATIAV--KEVED----PSRYGVVELDDDGRVTRFVEKPT---------LPESNLANAGIYIFEPEILD  178 (217)
T ss_pred             HHHHhcCCCEEEEE--EEcCC----CCcceEEEEcCCCcEEEEEECCC---------CCCCCEEEEEEEEECHHHHH
Confidence            77753 33444443  23210    11222233455566544332210         00013556778999887654

Nucleotidyltransferases transfer nucleotides onto phosphosugars. The enzyme family includes Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. The products are activated sugars that are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides.

>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional

Probab=96.42  E-value=0.47  Score=41.55  Aligned_cols=196  Identities=13%  Similarity=0.104  Sum_probs=99.7

Q ss_pred             ccCCCCcEEEEcC--cHHHHHHHHH-cCC------e-E-EeCC------CCCCCch-HHHHHHHHHhcC-CCCEEEEecC
Q 027992            6 HSFLFCGLVVATD--DEKIAECCQQ-FGA------D-V-IMTS------ESCRNGT-ERCNEALQKLEK-KYDIVVNIQG   66 (215)
Q Consensus         6 ~~~~~d~ivV~td--~~~i~~~~~~-~g~------~-v-~~~~------~~~~~~~-~~i~~~l~~~~~-~~d~v~~~~~   66 (215)
                      ....+++|+|+|.  .+.+.+...+ ++.      . + +..+      ++...|+ ..+++++..+.. ..|.++++.|
T Consensus        58 ~~~Gi~~i~vv~~~~~~~i~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~e~~~lGTa~al~~a~~~l~~~~~d~~lVl~g  137 (425)
T PRK00725         58 INSGIRRIGVLTQYKAHSLIRHIQRGWSFFREELGEFVDLLPAQQRVDEENWYRGTADAVYQNLDIIRRYDPKYVVILAG  137 (425)
T ss_pred             HHCCCCeEEEEecCCHHHHHHHHHhhhcccccCCCCeEEEeCCcccCCCCccccCcHHHHHHHHHHHHhcCCCEEEEecC
Confidence            3457899999995  4666665543 221      1 1 1111      1111344 367778777742 2478999999


Q ss_pred             CCCCCCHHHHHHHHHHHHc-CCCceEEeecccCCCCccCCCCc-eEEEEcCCCceecccCCCCCCCCCCCCCCCCCeeEE
Q 027992           67 DEPLIEPEIIDGVVKALQA-APDAVFSTAVTSLKPEDAFDPNR-VKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLH  144 (215)
Q Consensus        67 d~Pli~~~~i~~~i~~~~~-~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~ip~~~~~~~~q~~p~~~~  144 (215)
                      |.  +...++.++++.+.+ +.+..+++...+..     ++.. -.+..+++|.+..|.+.  |........+.-....+
T Consensus       138 D~--l~~~dl~~ll~~h~~~~~~~tl~~~~~~~~-----~~~~yG~v~~d~~~~V~~~~EK--p~~~~~~~~~~~~~l~n  208 (425)
T PRK00725        138 DH--IYKMDYSRMLADHVESGADCTVACLEVPRE-----EASAFGVMAVDENDRITAFVEK--PANPPAMPGDPDKSLAS  208 (425)
T ss_pred             Ce--EeccCHHHHHHHHHHcCCCEEEEEEecchh-----hcccceEEEECCCCCEEEEEEC--CCCccccccCccceEEE
Confidence            98  456789999998864 33344443212111     1111 12233556665544332  11000000011124567


Q ss_pred             eeeeeechHHHhhC-cCCCCCCCCCccch-hhhhhhhcCCeeEEEEec-----------CCCCCCCCHHHHHHHHHHHH
Q 027992          145 LGIQSYDSNFLKIY-PGLHPTPLQLEEDL-EQLKVLENGYKMKVIKVD-----------HEAHGVDAPEDVEKIESFMR  210 (215)
Q Consensus       145 ~~~~~~~~~~l~~~-~~~~~~~~~~~e~l-~~~~~~~~g~~v~~~~~~-----------~~~idIdt~~Dl~~ae~il~  210 (215)
                      .+.|+|..+.|..+ ...........+.. +....+....++..++..           ....||.|++++..|...+.
T Consensus       209 ~GIYi~~~~~L~~~L~~~~~~~~~~~~~~~dii~~l~~~~~v~~~~~~g~~~~~~~~~~gyw~digt~~~y~~an~~ll  287 (425)
T PRK00725        209 MGIYVFNADYLYELLEEDAEDPNSSHDFGKDIIPKIVEEGKVYAHPFSDSCVRSDPEEEPYWRDVGTLDAYWQANLDLA  287 (425)
T ss_pred             eeEEEEeHHHHHHHHHHhhcCCCccchhhHHHHHHHhccCcEEEEEecCCccccccccCCeEEECCCHHHHHHHHHHHc
Confidence            88899988765432 11100000011111 222322233356666542           35689999999999976653

>PLN02241 glucose-1-phosphate adenylyltransferase

Probab=96.37  E-value=0.25  Score=43.42  Aligned_cols=198  Identities=17%  Similarity=0.215  Sum_probs=101.8

Q ss_pred             cccCCCCcEEEEcC--cHHHHHHHHH-c--C---------CeEEeCCCC------CCCch-HHHHHHHHHhcCC----CC
Q 027992            5 CHSFLFCGLVVATD--DEKIAECCQQ-F--G---------ADVIMTSES------CRNGT-ERCNEALQKLEKK----YD   59 (215)
Q Consensus         5 ~~~~~~d~ivV~td--~~~i~~~~~~-~--g---------~~v~~~~~~------~~~~~-~~i~~~l~~~~~~----~d   59 (215)
                      +....+++|+|++.  .+.+.+.... +  +         ..+ ..+.+      ...|+ ..+++++..+...    .+
T Consensus        45 l~~~Gi~~i~iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~i-~~~~q~~~~~~~~lGt~~al~~~~~~~~~~~~~~~~  123 (436)
T PLN02241         45 CINSGINKIYVLTQFNSASLNRHLSRAYNFGNGGNFGDGFVEV-LAATQTPGEKGWFQGTADAVRQFLWLFEDAKNKNVE  123 (436)
T ss_pred             HHhCCCCEEEEEeccCHHHHHHHHhccCCCCCCcccCCCCEEE-cCCcccCCCCccccCcHHHHHHHHHHHHhcccCCCC
Confidence            34467999999995  4667666643 1  1         111 11111      11233 3455555444211    36


Q ss_pred             EEEEecCCCCCCCHHHHHHHHHHHHcCCCceEEeecccCCCCccCCCCceEEEEcCCCceecccCCCCCCC-CCC-----
Q 027992           60 IVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYN-KSG-----  133 (215)
Q Consensus        60 ~v~~~~~d~Pli~~~~i~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ip~~-~~~-----  133 (215)
                      .++++.||. + ...++.++++.+++. ++.+++...+...+.. ....+. ..+++|.+..|.+.+-... +..     
T Consensus       124 ~~lv~~gD~-v-~~~dl~~ll~~h~~~-~a~~ti~~~~v~~~~~-~~ygvv-~~d~~~~v~~~~Ekp~~~~~~~~~~~~~  198 (436)
T PLN02241        124 EVLILSGDH-L-YRMDYMDFVQKHRES-GADITIACLPVDESRA-SDFGLM-KIDDTGRIIEFSEKPKGDELKAMQVDTT  198 (436)
T ss_pred             EEEEecCCe-E-EccCHHHHHHHHHHc-CCCEEEEEEecchhhc-CcceEE-EECCCCCEEEEEECCCCccccccccccc
Confidence            789999998 3 456899999988653 3333332333321000 112222 2366676654433210000 000     


Q ss_pred             ---C---CCCCCCeeEEeeeeeechHHHhhC-cCCCCCCCCCccchhhhh-hhhcCCeeEEEEecCCCCCCCCHHHHHHH
Q 027992          134 ---K---VNPQFPYLLHLGIQSYDSNFLKIY-PGLHPTPLQLEEDLEQLK-VLENGYKMKVIKVDHEAHGVDAPEDVEKI  205 (215)
Q Consensus       134 ---~---~~q~~p~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~e~l~~~~-~~~~g~~v~~~~~~~~~idIdt~~Dl~~a  205 (215)
                         .   ..|........+.|+|..+.+... .....+.....  .+... +...|.+++.+..+....||++++|+..|
T Consensus       199 ~~~~~~~~~~~~~~~~~~GIyi~~~~~l~~ll~~~~~~~~~~~--~dil~~l~~~g~~v~~~~~~gyw~dIg~~~~y~~a  276 (436)
T PLN02241        199 VLGLSPEEAKEKPYIASMGIYVFKKDVLLKLLRWRFPTANDFG--SEIIPGAIKEGYNVQAYLFDGYWEDIGTIKSFYEA  276 (436)
T ss_pred             ccccccccccccceEEEeEEEEEEHHHHHHHHHhhcccccchh--HHHHHHHhhcCCeEEEEeeCCEEEECCCHHHHHHH
Confidence               0   001112456778899987766432 21111110011  12222 22257789988877788999999999999


Q ss_pred             HHHHH
Q 027992          206 ESFMR  210 (215)
Q Consensus       206 e~il~  210 (215)
                      ...+.
T Consensus       277 ~~~~l  281 (436)
T PLN02241        277 NLALT  281 (436)
T ss_pred             HHHHh
Confidence            87764

>COG1213 Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane]

Probab=96.31  E-value=0.088  Score=41.96  Aligned_cols=178  Identities=16%  Similarity=0.216  Sum_probs=91.8

Q ss_pred             ccccCCCCcEEEEc---CcHHHHHHHHHcCCe--EEeCCCCCC-CchH-HHHHHHHHhcCCCCEEEEecCCCCCCCHHHH
Q 027992            4 MCHSFLFCGLVVAT---DDEKIAECCQQFGAD--VIMTSESCR-NGTE-RCNEALQKLEKKYDIVVNIQGDEPLIEPEII   76 (215)
Q Consensus         4 a~~~~~~d~ivV~t---d~~~i~~~~~~~g~~--v~~~~~~~~-~~~~-~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i   76 (215)
                      .+....+++++|||   ..+-+.+...++++.  ++.++ ... +++. ++..|.+.+..   -++++.+|- +..+..+
T Consensus        40 ~L~~~gi~e~vvV~~g~~~~lve~~l~~~~~~~~iv~N~-~y~ktN~~~Sl~~akd~~~~---~fii~~sD~-vye~~~~  114 (239)
T COG1213          40 NLAKAGITEFVVVTNGYRADLVEEFLKKYPFNAKIVINS-DYEKTNTGYSLLLAKDYMDG---RFILVMSDH-VYEPSIL  114 (239)
T ss_pred             HHHHcCCceEEEEeccchHHHHHHHHhcCCcceEEEeCC-CcccCCceeEEeeehhhhcC---cEEEEeCCE-eecHHHH
Confidence            35567889999999   356778888888754  34444 333 3322 56666666632   388888886 5578888


Q ss_pred             HHHHHHHHcCCCceEEeecccCCCCccCCCCceEEEEcCCCceecccCCCCCCCCCCCCCCCCCeeEEeeeeeechHHHh
Q 027992           77 DGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLK  156 (215)
Q Consensus        77 ~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ip~~~~~~~~q~~p~~~~~~~~~~~~~~l~  156 (215)
                      ++++++-   ...++... .+..    ..-.-...+..++|.+...++..        +  + ......+...+....+.
T Consensus       115 e~l~~a~---~~~li~d~-~~~~----~~~~ea~kv~~e~G~i~~igK~l--------~--e-~~~e~iGi~~l~~~i~~  175 (239)
T COG1213         115 ERLLEAP---GEGLIVDR-RPRY----VGVEEATKVKDEGGRIVEIGKDL--------T--E-YDGEDIGIFILSDSIFE  175 (239)
T ss_pred             HHHHhCc---CCcEEEec-cccc----cccCceeEEEecCCEEehhcCCc--------c--c-ccceeeeeEEechHHHH
Confidence            8877653   23333322 2221    00112222335777765433321        0  0 01123444444433222


Q ss_pred             h-CcCCCCCCCCCccchhhhh--hhhcCCeeEEEEe---cCCCCCCCCHHHHHHHHHHHHh
Q 027992          157 I-YPGLHPTPLQLEEDLEQLK--VLENGYKMKVIKV---DHEAHGVDAPEDVEKIESFMRE  211 (215)
Q Consensus       157 ~-~~~~~~~~~~~~e~l~~~~--~~~~g~~v~~~~~---~~~~idIdt~~Dl~~ae~il~~  211 (215)
                      . +..+.    +..+  -+.+  .-+.+.+...+-.   ....++||||+|+..|.+++-.
T Consensus       176 ~~~~~~~----e~~~--~~~~~~~~~~~~~~~~~di~~~g~~w~EVDtpeDl~~ar~~~~~  230 (239)
T COG1213         176 DTYELLV----ERSE--YDYREVEKEAGLPFTEVDIHVDGLFWMEVDTPEDLERARKYLVP  230 (239)
T ss_pred             HHHHHHh----hhhh--HHHHHHHHHhCCceEEeeccccCceeEecCCHHHHHHHHHHHHH
Confidence            1 11111    0011  1111  1113444433332   1456699999999999998753

>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional

Probab=96.17  E-value=0.69  Score=40.20  Aligned_cols=197  Identities=13%  Similarity=0.056  Sum_probs=99.5

Q ss_pred             ccccCCCCcEEEEcC--cHHHHHHHHH-cC-----CeEEeC-C--C----CCCCchH-HHHHHHHHhcC-CCCEEEEecC
Q 027992            4 MCHSFLFCGLVVATD--DEKIAECCQQ-FG-----ADVIMT-S--E----SCRNGTE-RCNEALQKLEK-KYDIVVNIQG   66 (215)
Q Consensus         4 a~~~~~~d~ivV~td--~~~i~~~~~~-~g-----~~v~~~-~--~----~~~~~~~-~i~~~l~~~~~-~~d~v~~~~~   66 (215)
                      ++....+++|+|++.  .+.+.+.... ++     ...+.. +  .    .+..|++ .++.++..+.. ..|.++++.|
T Consensus        46 ~l~~~Gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lGta~al~~a~~~i~~~~~~~~lv~~g  125 (407)
T PRK00844         46 NLVNSGYLRIYVLTQYKSHSLDRHISQTWRLSGLLGNYITPVPAQQRLGKRWYLGSADAIYQSLNLIEDEDPDYVVVFGA  125 (407)
T ss_pred             HHHHCCCCEEEEEeccCHHHHHHHHHhCcCccccCCCeEEECCcccCCCCCcccCCHHHHHHHHHHHHhcCCCEEEEecC
Confidence            344567999999994  5667766642 21     112211 1  0    1123443 57777777643 3378999999


Q ss_pred             CCCCCCHHHHHHHHHHHHcC-CCceEEeecccCCCCccCCCCceEEEEcCCCceecccCCCCCCCCCCCCCCCCCeeEEe
Q 027992           67 DEPLIEPEIIDGVVKALQAA-PDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHL  145 (215)
Q Consensus        67 d~Pli~~~~i~~~i~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ip~~~~~~~~q~~p~~~~~  145 (215)
                      |.  +...++.++++.++.+ .+..+.+...+..   ......+ +..+++|.+..|.+.+.+ ..+ .+.+.-....+.
T Consensus       126 D~--v~~~dl~~l~~~h~~~~~~~ti~~~~~~~~---~~~~~Gv-v~~d~~g~v~~~~eKp~~-~~~-~~~~~~~~~~~~  197 (407)
T PRK00844        126 DH--VYRMDPRQMVDFHIESGAGVTVAAIRVPRE---EASAFGV-IEVDPDGRIRGFLEKPAD-PPG-LPDDPDEALASM  197 (407)
T ss_pred             CE--EEcCCHHHHHHHHHhcCCcEEEEEEecchH---HcccCCE-EEECCCCCEEEEEECCCC-ccc-ccCCCCCcEEEe
Confidence            97  5567889999888643 3333332211111   0111222 233556666544322110 000 000111135677


Q ss_pred             eeeeechHHHhh-CcCCCCCCCCCccch--hhhhhh-hcCCeeEEEEe------------cCCCCCCCCHHHHHHHHHHH
Q 027992          146 GIQSYDSNFLKI-YPGLHPTPLQLEEDL--EQLKVL-ENGYKMKVIKV------------DHEAHGVDAPEDVEKIESFM  209 (215)
Q Consensus       146 ~~~~~~~~~l~~-~~~~~~~~~~~~e~l--~~~~~~-~~g~~v~~~~~------------~~~~idIdt~~Dl~~ae~il  209 (215)
                      +.|+|..+.|.. ........ ...+++  +....+ ..| ++..++.            .....||.|++|+..|...|
T Consensus       198 Giyi~~~~~l~~~l~~~~~~~-~~~~~~~~dii~~l~~~~-~v~~~~~~~~~~~g~n~~~~g~w~Digt~~~y~~a~~~l  275 (407)
T PRK00844        198 GNYVFTTDALVDALRRDAADE-DSSHDMGGDIIPRLVERG-RAYVYDFSTNEVPGATERDRGYWRDVGTIDAYYDAHMDL  275 (407)
T ss_pred             EEEEEeHHHHHHHHHHhhcCC-cccccchhhHHHHHhccC-eEEEEEcccccccccccCCCCEEEECCCHHHHHHHHHHH
Confidence            889999877543 22110000 001111  222322 234 5666643            23468999999999997666


Q ss_pred             H
Q 027992          210 R  210 (215)
Q Consensus       210 ~  210 (215)
                      -
T Consensus       276 L  276 (407)
T PRK00844        276 L  276 (407)
T ss_pred             h
Confidence            4

>cd02509 GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransferase catalyzes the formation of GDP-Mannose

Probab=95.61  E-value=0.39  Score=39.43  Aligned_cols=89  Identities=15%  Similarity=0.126  Sum_probs=53.7

Q ss_pred             cCCCCcEEEEcCcH---HHHHHHHH--cCCeEEeCCCCCCCchH-HHHHHHHHhc--CCCCEEEEecCCCCCCCHHHHHH
Q 027992            7 SFLFCGLVVATDDE---KIAECCQQ--FGADVIMTSESCRNGTE-RCNEALQKLE--KKYDIVVNIQGDEPLIEPEIIDG   78 (215)
Q Consensus         7 ~~~~d~ivV~td~~---~i~~~~~~--~g~~v~~~~~~~~~~~~-~i~~~l~~~~--~~~d~v~~~~~d~Pli~~~~i~~   78 (215)
                      ...+++|+|+|...   .+.+.+..  .+..++..|..  .|+. .+..++..+.  .+.+.++++.+|.++.+...+.+
T Consensus        46 ~~~~~~i~vvt~~~~~~~v~~~l~~~~~~~~ii~ep~~--~gTa~ai~~a~~~~~~~~~~~~vlVl~~D~~i~~~~~f~~  123 (274)
T cd02509          46 LVPPDRILVVTNEEYRFLVREQLPEGLPEENIILEPEG--RNTAPAIALAALYLAKRDPDAVLLVLPSDHLIEDVEAFLK  123 (274)
T ss_pred             CCCCCcEEEEechHHHHHHHHHHhhcCCCceEEECCCC--CCcHHHHHHHHHHHHhcCCCCeEEEecchhcccCHHHHHH
Confidence            33578999999642   34455544  23455554433  3444 5666665553  23478999999999988887777


Q ss_pred             HHHHHHc--CCCceEEeeccc
Q 027992           79 VVKALQA--APDAVFSTAVTS   97 (215)
Q Consensus        79 ~i~~~~~--~~~~~i~~~~~~   97 (215)
                      +++...+  ..++++++...+
T Consensus       124 ~l~~~~~~~~~~~~vt~gi~p  144 (274)
T cd02509         124 AVKKAVEAAEEGYLVTFGIKP  144 (274)
T ss_pred             HHHHHHHHHHcCCEEEEEeee
Confidence            7765431  134555544333

GDP-mannose-1-phosphate guanylyltransferase, also called GDP-mannose pyrophosphorylase (GDP-MP), catalyzes the formation of GDP-Mannose from mannose-1-phosphate and GTP. Mannose is a key monosaccharide for glycosylation of proteins and lipids. GDP-Mannose is the activated donor for mannosylation of various biomolecules. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase and mannose-1-phosphate guanylyltransferase. This CD covers the N-terminal GDP-mannose-1-phosphate guanylyltransferase domain, whereas the isomerase function is located at the C-terminal half. GDP-MP is a member of the nucleotidyltransferase family of enzymes.

>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis

Probab=95.12  E-value=0.48  Score=35.88  Aligned_cols=80  Identities=20%  Similarity=0.327  Sum_probs=54.1

Q ss_pred             CcEEEEcC--cHHHHHHHHHcCCeEEeCCCCCCCchH-HHHHHHHHh---cCCCCEEEEecCCCCCCCHHHHHHHHHHHH
Q 027992           11 CGLVVATD--DEKIAECCQQFGADVIMTSESCRNGTE-RCNEALQKL---EKKYDIVVNIQGDEPLIEPEIIDGVVKALQ   84 (215)
Q Consensus        11 d~ivV~td--~~~i~~~~~~~g~~v~~~~~~~~~~~~-~i~~~l~~~---~~~~d~v~~~~~d~Pli~~~~i~~~i~~~~   84 (215)
                      -+|+|+.|  .+...+++++++..++.+......|.+ .+..|+...   ....|+++++++|.=+ .|+.+.+++..+.
T Consensus        29 ~eiivvdd~s~D~t~~~~~~~~~~~~~~~~~~~~gk~~aln~g~~~a~~~~~~~d~v~~~DaD~~~-~p~~l~~l~~~~~  107 (183)
T cd06438          29 YRIFVVADNCTDDTAQVARAAGATVLERHDPERRGKGYALDFGFRHLLNLADDPDAVVVFDADNLV-DPNALEELNARFA  107 (183)
T ss_pred             cEEEEEeCCCCchHHHHHHHcCCeEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCEEEEEcCCCCC-ChhHHHHHHHHHh
Confidence            35776664  355677888888877544322223444 455666654   2357999999999977 5999999999997


Q ss_pred             cCCCceE
Q 027992           85 AAPDAVF   91 (215)
Q Consensus        85 ~~~~~~i   91 (215)
                      ++.+.+.
T Consensus       108 ~~~~~v~  114 (183)
T cd06438         108 AGARVVQ  114 (183)
T ss_pred             hCCCeeE
Confidence            6555433

The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.

>PF09837 DUF2064: Uncharacterized protein conserved in bacteria (DUF2064); InterPro: IPR018641 This entry contains proteins that have no known function

Probab=95.10  E-value=0.33  Score=34.87  Aligned_cols=62  Identities=27%  Similarity=0.375  Sum_probs=39.9

Q ss_pred             HHcCCeEEeCCCCCCCch-HHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHHHHcCCCceEE
Q 027992           27 QQFGADVIMTSESCRNGT-ERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFS   92 (215)
Q Consensus        27 ~~~g~~v~~~~~~~~~~~-~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~~~~~~~~~i~   92 (215)
                      ...++.++... .  ++. .|+.+++......++-|+++=.|.|.+++++|.++.+.+..+ +.+++
T Consensus        31 ~~~~~~~~~Q~-g--~dLG~Rm~~a~~~~~~g~~~vvliGsD~P~l~~~~l~~A~~~L~~~-d~Vlg   93 (122)
T PF09837_consen   31 LPSGFSFFPQQ-G--GDLGERMANAFQQAARGYEPVVLIGSDCPDLTPDDLEQAFEALQRH-DVVLG   93 (122)
T ss_dssp             H-TTSEEEE---S--SSHHHHHHHHHHHHHTT-SEEEEE-SS-TT--HHHHHHHHHHTTT--SEEEE
T ss_pred             cCCCCEEeecC-C--CCHHHHHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHHHhccC-CEEEe
Confidence            34466665432 1  344 478888877655678999999999999999999999998653 66555

; PDB: 3CGX_A.

>cd04197 eIF-2B_epsilon_N The N-terminal domain of epsilon subunit of the eIF-2B is a subfamily of glycosyltransferase 2

Probab=94.47  E-value=0.57  Score=36.82  Aligned_cols=116  Identities=13%  Similarity=0.102  Sum_probs=58.7

Q ss_pred             ccCCCCcEEEEcC--cHHHHHHHHHcC--------CeE-EeCCCCCCCchH-HHHHHHHHhcCCCCEEEEecCCCCCCCH
Q 027992            6 HSFLFCGLVVATD--DEKIAECCQQFG--------ADV-IMTSESCRNGTE-RCNEALQKLEKKYDIVVNIQGDEPLIEP   73 (215)
Q Consensus         6 ~~~~~d~ivV~td--~~~i~~~~~~~g--------~~v-~~~~~~~~~~~~-~i~~~l~~~~~~~d~v~~~~~d~Pli~~   73 (215)
                      ...++++|+|+|.  .+.+.+...+..        ..+ +....+. .+++ .++..... ..-.+.++++.||.  +..
T Consensus        42 ~~~Gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~~~i~~~~~~~~-~~~~~al~~~~~~-~~~~~~flv~~gD~--i~~  117 (217)
T cd04197          42 ALNGVEEVFVFCCSHSDQIKEYIEKSKWSKPKSSLMIVIIIMSEDC-RSLGDALRDLDAK-GLIRGDFILVSGDV--VSN  117 (217)
T ss_pred             HHCCCCeEEEEeCCCHHHHHHHHhhccccccccCcceEEEEeCCCc-CccchHHHHHhhc-cccCCCEEEEeCCe--eec
Confidence            3457999999995  577777766531        223 2222221 2222 22211111 10124478999996  456


Q ss_pred             HHHHHHHHHHHcC----CCceEEeecccCCCCc---cCCCCceEEEEcCCCceecccCC
Q 027992           74 EIIDGVVKALQAA----PDAVFSTAVTSLKPED---AFDPNRVKCVVDNHGYAIYFSRG  125 (215)
Q Consensus        74 ~~i~~~i~~~~~~----~~~~i~~~~~~~~~~~---~~~~~~~~~~~~~~g~~~~~~~~  125 (215)
                      ..+.++++.+++.    .++.+++...+.....   ..+++.+..+.+++|.+..|.+.
T Consensus       118 ~dl~~~l~~h~~~~~~~~~a~~t~~~~~~~~~~~~~~~~~~~vv~~d~~~~~v~~~~ek  176 (217)
T cd04197         118 IDLKEILEEHKERRKKDKNAIMTMVLKEASPPHRTRRTGEEFVIAVDPKTSRLLHYEEL  176 (217)
T ss_pred             cCHHHHHHHHHHhhccccCceEEEEEEeCCCccccccCCCceEEEEcCCCCcEEEEecc
Confidence            7899999988652    3555554433432111   01112233333344677666544

N-terminal domain of epsilon subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.

>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming)

Probab=94.38  E-value=0.54  Score=44.01  Aligned_cols=66  Identities=17%  Similarity=0.351  Sum_probs=50.6

Q ss_pred             HHHHHHHHHcCCeEEeCCCCCCCchHHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHHHHcCCC
Q 027992           20 EKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPD   88 (215)
Q Consensus        20 ~~i~~~~~~~g~~v~~~~~~~~~~~~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~~~~~~~   88 (215)
                      ++++++++++|+..+.|+....+....+.+|++..  +.|+++++++|.=. +++.+.+++..|.++++
T Consensus       193 ~~~~~l~~~~~v~yi~r~~n~~~KAgnLN~al~~a--~gd~Il~lDAD~v~-~pd~L~~~v~~f~~dp~  258 (713)
T TIGR03030       193 EELKEFCRKLGVNYITRPRNVHAKAGNINNALKHT--DGELILIFDADHVP-TRDFLQRTVGWFVEDPK  258 (713)
T ss_pred             HHHHHHHHHcCcEEEECCCCCCCChHHHHHHHHhc--CCCEEEEECCCCCc-ChhHHHHHHHHHHhCCC
Confidence            45678888899988777755323344678888876  56999999999975 79999999999965544

Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.

>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional

Probab=93.97  E-value=0.69  Score=44.02  Aligned_cols=74  Identities=15%  Similarity=0.150  Sum_probs=56.5

Q ss_pred             cEEEEcC--cHHHHHHHHHcCCeEEeCCCCCCCchHHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHHHHcCCC
Q 027992           12 GLVVATD--DEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPD   88 (215)
Q Consensus        12 ~ivV~td--~~~i~~~~~~~g~~v~~~~~~~~~~~~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~~~~~~~   88 (215)
                      +|+|+-|  .++..++++++|+.++.|+....+....+.+|++..  ..|+++++++|.= .+++.+++++..+.++++
T Consensus       294 EViVVDDgS~D~t~~la~~~~v~yI~R~~n~~gKAGnLN~aL~~a--~GEyIavlDAD~i-p~pdfL~~~V~~f~~dP~  369 (852)
T PRK11498        294 NIWILDDGGREEFRQFAQEVGVKYIARPTHEHAKAGNINNALKYA--KGEFVAIFDCDHV-PTRSFLQMTMGWFLKDKK  369 (852)
T ss_pred             EEEEEeCCCChHHHHHHHHCCcEEEEeCCCCcchHHHHHHHHHhC--CCCEEEEECCCCC-CChHHHHHHHHHHHhCCC
Confidence            5777765  478889999999988777644322234578888876  6799999999996 589999999998865555

>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase

Probab=93.96  E-value=0.78  Score=36.04  Aligned_cols=73  Identities=19%  Similarity=0.378  Sum_probs=48.1

Q ss_pred             CcEEEEcCc-------HHHHHHHHHcCCeE-EeCCCCCCCc-hHHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHH
Q 027992           11 CGLVVATDD-------EKIAECCQQFGADV-IMTSESCRNG-TERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVK   81 (215)
Q Consensus        11 d~ivV~td~-------~~i~~~~~~~g~~v-~~~~~~~~~~-~~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~   81 (215)
                      .+|+|+-++       +.+++++++++..+ +.+.....|+ ...+..|++.+....|+++++++|. .++++.|.+++.
T Consensus        29 ~eiiVvdd~s~D~t~~~~i~~~~~~~~~~i~~i~~~~~~G~~~~a~n~g~~~a~~~~d~i~~lD~D~-~~~~~~l~~l~~  107 (236)
T cd06435          29 FEVIVIDNNTKDEALWKPVEAHCAQLGERFRFFHVEPLPGAKAGALNYALERTAPDAEIIAVIDADY-QVEPDWLKRLVP  107 (236)
T ss_pred             cEEEEEeCCCCchhHHHHHHHHHHHhCCcEEEEEcCCCCCCchHHHHHHHHhcCCCCCEEEEEcCCC-CcCHHHHHHHHH
Confidence            467776632       22446666666444 2322222243 4456677777644579999999997 789999999999


Q ss_pred             HHH
Q 027992           82 ALQ   84 (215)
Q Consensus        82 ~~~   84 (215)
                      .+.
T Consensus       108 ~~~  110 (236)
T cd06435         108 IFD  110 (236)
T ss_pred             Hhc
Confidence            985

NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.

>cd02508 ADP_Glucose_PP ADP-glucose pyrophosphorylase is involved in the biosynthesis of glycogen or starch

Probab=93.50  E-value=0.41  Score=37.11  Aligned_cols=79  Identities=13%  Similarity=0.105  Sum_probs=51.0

Q ss_pred             ccCCCCcEEEEcC--cHHHHHHHHH---cC-------CeEEeC----CCCCCCch-HHHHHHHHHhc-CCCCEEEEecCC
Q 027992            6 HSFLFCGLVVATD--DEKIAECCQQ---FG-------ADVIMT----SESCRNGT-ERCNEALQKLE-KKYDIVVNIQGD   67 (215)
Q Consensus         6 ~~~~~d~ivV~td--~~~i~~~~~~---~g-------~~v~~~----~~~~~~~~-~~i~~~l~~~~-~~~d~v~~~~~d   67 (215)
                      ....+++|+|++.  .+++.+....   +|       +.++..    ..+..-|+ .+++.|...+. .+.+.++++.||
T Consensus        41 ~~~gi~~iivv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gta~al~~a~~~i~~~~~~~~lv~~gD  120 (200)
T cd02508          41 VNSGIRNVGVLTQYKSRSLNDHLGSGKEWDLDRKNGGLFILPPQQRKGGDWYRGTADAIYQNLDYIERSDPEYVLILSGD  120 (200)
T ss_pred             HHCCCCEEEEEeCCChHHHHHHHhCCCcccCCCCCCCEEEeCcccCCCCCcccCcHHHHHHHHHHHHhCCCCEEEEecCC
Confidence            3357899999994  4667766543   22       233321    11222344 46788877773 234789999999


Q ss_pred             CCCCCHHHHHHHHHHHHcC
Q 027992           68 EPLIEPEIIDGVVKALQAA   86 (215)
Q Consensus        68 ~Pli~~~~i~~~i~~~~~~   86 (215)
                      .  +...++.++++.++++
T Consensus       121 ~--v~~~~~~~~l~~~~~~  137 (200)
T cd02508         121 H--IYNMDYREMLDFHIES  137 (200)
T ss_pred             E--EEecCHHHHHHHHHHc
Confidence            9  6778899999988653

ADP-glucose pyrophosphorylase (glucose-1-phosphate adenylyltransferase) catalyzes a very important step in the biosynthesis of alpha 1,4-glucans (glycogen or starch) in bacteria and plants: synthesis of the activated glucosyl donor, ADP-glucose, from glucose-1-phosphate and ATP. ADP-glucose pyrophosphorylase is a tetrameric allosterically regulated enzyme. While a homotetramer in bacteria, in plant chloroplasts and amyloplasts, it is a heterotetramer of two different, yet evolutionary related, subunits. There are a number of conserved regions in the sequence of bacterial and plant ADP-glucose pyrophosphorylase subunits. It is a subfamily of a very diverse glycosy transferase family 2.

>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose

Probab=93.48  E-value=1  Score=35.16  Aligned_cols=74  Identities=15%  Similarity=0.252  Sum_probs=51.0

Q ss_pred             cEEEEcC--cHHHHHHHHHcCC----eEEeCCCCCCCchHHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHHHHc
Q 027992           12 GLVVATD--DEKIAECCQQFGA----DVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA   85 (215)
Q Consensus        12 ~ivV~td--~~~i~~~~~~~g~----~v~~~~~~~~~~~~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~~~~   85 (215)
                      +|+|+-|  ++...+++++++.    .++.++....+....+..|++..  ..|+++++++|.=+ .++.+.++++.+.+
T Consensus        35 eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~a--~~d~i~~lD~D~~~-~~~~l~~l~~~~~~  111 (234)
T cd06421          35 RVYVLDDGRRPELRALAAELGVEYGYRYLTRPDNRHAKAGNLNNALAHT--TGDFVAILDADHVP-TPDFLRRTLGYFLD  111 (234)
T ss_pred             EEEEEcCCCchhHHHHHHHhhcccCceEEEeCCCCCCcHHHHHHHHHhC--CCCEEEEEccccCc-CccHHHHHHHHHhc
Confidence            6777764  3566677777765    45544433222233467777765  67999999999655 88999999999976


Q ss_pred             CCC
Q 027992           86 APD   88 (215)
Q Consensus        86 ~~~   88 (215)
                      +++
T Consensus       112 ~~~  114 (234)
T cd06421         112 DPK  114 (234)
T ss_pred             CCC
Confidence            444

Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.

>cd02511 Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide

Probab=93.47  E-value=1.6  Score=34.53  Aligned_cols=72  Identities=24%  Similarity=0.358  Sum_probs=51.8

Q ss_pred             CcEEEEcC--cHHHHHHHHHcCCeEEeCCCCCCCchH-HHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHHHHcCC
Q 027992           11 CGLVVATD--DEKIAECCQQFGADVIMTSESCRNGTE-RCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAP   87 (215)
Q Consensus        11 d~ivV~td--~~~i~~~~~~~g~~v~~~~~~~~~~~~-~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~~~~~~   87 (215)
                      ++|||+-+  .+...++++.++++++.. ..  .|.+ ....|+..+  ..|+|+++++|. .++++.+..+.+.+..++
T Consensus        27 ~eiivvD~gStD~t~~i~~~~~~~v~~~-~~--~g~~~~~n~~~~~a--~~d~vl~lDaD~-~~~~~~~~~l~~~~~~~~  100 (229)
T cd02511          27 DEIIVVDSGSTDRTVEIAKEYGAKVYQR-WW--DGFGAQRNFALELA--TNDWVLSLDADE-RLTPELADEILALLATDD  100 (229)
T ss_pred             CEEEEEeCCCCccHHHHHHHcCCEEEEC-CC--CChHHHHHHHHHhC--CCCEEEEEeCCc-CcCHHHHHHHHHHHhCCC
Confidence            67777764  245677888899988755 22  3444 345566665  568999999997 469999999999887654


Q ss_pred             C
Q 027992           88 D   88 (215)
Q Consensus        88 ~   88 (215)
                      .
T Consensus       101 ~  101 (229)
T cd02511         101 Y  101 (229)
T ss_pred             C
Confidence            3

UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.

>cd04198 eIF-2B_gamma_N The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2

Probab=93.31  E-value=0.58  Score=36.74  Aligned_cols=82  Identities=18%  Similarity=0.185  Sum_probs=51.9

Q ss_pred             cCCCCcEEEEcCc---HHHHHHHHHc------CCeEEeCCCCCCCchH-HHHHHHHHhcCCCCEEEEecCCCCCCCHHHH
Q 027992            7 SFLFCGLVVATDD---EKIAECCQQF------GADVIMTSESCRNGTE-RCNEALQKLEKKYDIVVNIQGDEPLIEPEII   76 (215)
Q Consensus         7 ~~~~d~ivV~td~---~~i~~~~~~~------g~~v~~~~~~~~~~~~-~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i   76 (215)
                      ...+++|+|++..   +.+.+..+++      +..++........|++ +++++...+  . +.++++.||  +++...+
T Consensus        43 ~~g~~~iivv~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~gt~~al~~~~~~i--~-~d~lv~~~D--~i~~~~l  117 (214)
T cd04198          43 KAGFEDVIVVVPEEEQAEISTYLRSFPLNLKQKLDEVTIVLDEDMGTADSLRHIRKKI--K-KDFLVLSCD--LITDLPL  117 (214)
T ss_pred             HCCCCeEEEEECHHHHHHHHHHHHhcccccCcceeEEEecCCCCcChHHHHHHHHhhc--C-CCEEEEeCc--cccccCH
Confidence            3568999999964   3466666654      2223222222234544 567776665  2 348888999  7899999


Q ss_pred             HHHHHHHHcCCCceEEee
Q 027992           77 DGVVKALQAAPDAVFSTA   94 (215)
Q Consensus        77 ~~~i~~~~~~~~~~i~~~   94 (215)
                      ..+++.++.+ ++.+++.
T Consensus       118 ~~~l~~h~~~-~~~~t~~  134 (214)
T cd04198         118 IELVDLHRSH-DASLTVL  134 (214)
T ss_pred             HHHHHHHhcc-CCcEEEE
Confidence            9999998764 4444443

N-terminal domain of gamma subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit gamma shares sequence similarity with epsilon subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.

>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis

Probab=92.93  E-value=1.5  Score=33.33  Aligned_cols=77  Identities=18%  Similarity=0.336  Sum_probs=50.3

Q ss_pred             CcEEEEcCc---HHHHH----HHHHcCCeEEeCCCCCCCchH-HHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHH
Q 027992           11 CGLVVATDD---EKIAE----CCQQFGADVIMTSESCRNGTE-RCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKA   82 (215)
Q Consensus        11 d~ivV~td~---~~i~~----~~~~~g~~v~~~~~~~~~~~~-~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~   82 (215)
                      .+|+|+-|+   +...+    +++++++.++..+..  .|.. ....|+...  ..|+++++++|. ...+..+..+++.
T Consensus        30 ~eiiivdd~ss~d~t~~~~~~~~~~~~i~~i~~~~n--~G~~~a~N~g~~~a--~gd~i~~lD~Dd-~~~~~~l~~~~~~  104 (201)
T cd04195          30 DEVVLVKDGPVTQSLNEVLEEFKRKLPLKVVPLEKN--RGLGKALNEGLKHC--TYDWVARMDTDD-ISLPDRFEKQLDF  104 (201)
T ss_pred             cEEEEEECCCCchhHHHHHHHHHhcCCeEEEEcCcc--ccHHHHHHHHHHhc--CCCEEEEeCCcc-ccCcHHHHHHHHH
Confidence            567766542   23333    344455555555544  3443 456676665  579999999998 6789999999999


Q ss_pred             HHcCCCceEE
Q 027992           83 LQAAPDAVFS   92 (215)
Q Consensus        83 ~~~~~~~~i~   92 (215)
                      +.++++..+.
T Consensus       105 ~~~~~~~~~~  114 (201)
T cd04195         105 IEKNPEIDIV  114 (201)
T ss_pred             HHhCCCeEEE
Confidence            9765555444

AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.

>PF04028 DUF374: Domain of unknown function (DUF374); InterPro: IPR007172 This is a bacterial domain of unknown function

Probab=92.56  E-value=1.2  Score=28.93  Aligned_cols=66  Identities=30%  Similarity=0.367  Sum_probs=41.0

Q ss_pred             CccccccCCCCcEEEEc---CcHHHHHHHHHcCCeEEeCCCCCCCchHHHHHHHHHhcCCCCEEEEecCCCC
Q 027992            1 MLVMCHSFLFCGLVVAT---DDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEP   69 (215)
Q Consensus         1 ~~~a~~~~~~d~ivV~t---d~~~i~~~~~~~g~~v~~~~~~~~~~~~~i~~~l~~~~~~~d~v~~~~~d~P   69 (215)
                      |+.+.......-.++++   |.+-+..+++.+|+.++..+ .-.+|...++..++.+....++  .+.+|=|
T Consensus         1 m~p~~~~~~~~~~~lvS~s~DGe~ia~~~~~~G~~~iRGS-s~rgg~~Alr~~~~~lk~G~~~--~itpDGP   69 (74)
T PF04028_consen    1 MMPFLWRRRRKIAALVSRSRDGELIARVLERFGFRTIRGS-SSRGGARALREMLRALKEGYSI--AITPDGP   69 (74)
T ss_pred             CCCcEEcCCCCEEEEEccCcCHHHHHHHHHHcCCCeEEeC-CCCcHHHHHHHHHHHHHCCCeE--EEeCCCC
Confidence            34444423333344455   45777899999999998765 3346777788888888544444  4455544

>PRK13915 putative glucosyl-3-phosphoglycerate synthase; Provisional

Probab=91.65  E-value=2.3  Score=35.55  Aligned_cols=79  Identities=27%  Similarity=0.330  Sum_probs=52.6

Q ss_pred             CCCcEEEEcC--cHHHHHHHHHcCCeEEeCCC-----CCCCchH-HHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHH
Q 027992            9 LFCGLVVATD--DEKIAECCQQFGADVIMTSE-----SCRNGTE-RCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVV   80 (215)
Q Consensus         9 ~~d~ivV~td--~~~i~~~~~~~g~~v~~~~~-----~~~~~~~-~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i   80 (215)
                      ...+|||+-|  .+...+++++++++++.+..     ....|.+ .+..|+...  ..|+++++++|.--.+++.|.+++
T Consensus        61 ~~~EIIVVDDgStD~T~~ia~~~~~~v~~~~~~~~~~~~n~Gkg~A~~~g~~~a--~gd~vv~lDaD~~~~~p~~l~~l~  138 (306)
T PRK13915         61 LVDELIVIDSGSTDATAERAAAAGARVVSREEILPELPPRPGKGEALWRSLAAT--TGDIVVFVDADLINFDPMFVPGLL  138 (306)
T ss_pred             CCcEEEEEeCCCccHHHHHHHHhcchhhcchhhhhccccCCCHHHHHHHHHHhc--CCCEEEEEeCccccCCHHHHHHHH
Confidence            3467877764  35566778888876532211     1113443 456677654  569999999999888999999999


Q ss_pred             HHHHcCCCc
Q 027992           81 KALQAAPDA   89 (215)
Q Consensus        81 ~~~~~~~~~   89 (215)
                      +.+..+++.
T Consensus       139 ~~l~~~~~~  147 (306)
T PRK13915        139 GPLLTDPGV  147 (306)
T ss_pred             HHHHhCCCc
Confidence            988643343

>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1

Probab=91.40  E-value=4.2  Score=30.38  Aligned_cols=45  Identities=20%  Similarity=0.310  Sum_probs=34.1

Q ss_pred             HHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHHHHcCCCceEE
Q 027992           45 ERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFS   92 (215)
Q Consensus        45 ~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~~~~~~~~~i~   92 (215)
                      .....|+...  ..|+++++++|..+ .++.+.++++.+..+.+.+++
T Consensus        70 ~a~n~g~~~a--~~d~i~~~D~D~~~-~~~~l~~l~~~~~~~~~~v~g  114 (181)
T cd04187          70 AALLAGLDHA--RGDAVITMDADLQD-PPELIPEMLAKWEEGYDVVYG  114 (181)
T ss_pred             HHHHHHHHhc--CCCEEEEEeCCCCC-CHHHHHHHHHHHhCCCcEEEE
Confidence            3456777766  45999999999996 899999999987555454444

A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.

>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional

Probab=90.95  E-value=3.3  Score=34.87  Aligned_cols=75  Identities=17%  Similarity=0.287  Sum_probs=48.5

Q ss_pred             cEEEEcCc-----HH-HHHHHHHcCCeE--EeCCCCCCCch-HHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHH
Q 027992           12 GLVVATDD-----EK-IAECCQQFGADV--IMTSESCRNGT-ERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKA   82 (215)
Q Consensus        12 ~ivV~td~-----~~-i~~~~~~~g~~v--~~~~~~~~~~~-~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~   82 (215)
                      +|+|+-|.     .+ +.+.+++.+..+  +.....  .|. ..+..|+...  ..|+++++++|.- ..|+.|.++++.
T Consensus        40 EIIvVDDgS~D~T~~il~~~~~~~~~~v~~i~~~~n--~G~~~A~~~G~~~A--~gd~vv~~DaD~q-~~p~~i~~l~~~  114 (325)
T PRK10714         40 EILLIDDGSSDNSAEMLVEAAQAPDSHIVAILLNRN--YGQHSAIMAGFSHV--TGDLIITLDADLQ-NPPEEIPRLVAK  114 (325)
T ss_pred             EEEEEeCCCCCcHHHHHHHHHhhcCCcEEEEEeCCC--CCHHHHHHHHHHhC--CCCEEEEECCCCC-CCHHHHHHHHHH
Confidence            67776541     22 233344445554  222322  344 3567888776  5799999999998 599999999999


Q ss_pred             HHcCCCceE
Q 027992           83 LQAAPDAVF   91 (215)
Q Consensus        83 ~~~~~~~~i   91 (215)
                      +.++.|.+.
T Consensus       115 ~~~~~DvV~  123 (325)
T PRK10714        115 ADEGYDVVG  123 (325)
T ss_pred             HHhhCCEEE
Confidence            976556443

>PRK11204 N-glycosyltransferase; Provisional

Probab=90.76  E-value=3.4  Score=35.81  Aligned_cols=73  Identities=21%  Similarity=0.351  Sum_probs=47.2

Q ss_pred             CcEEEEcCc--HHHH----HHHHHcC-CeEEeCCCCCCCchH-HHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHH
Q 027992           11 CGLVVATDD--EKIA----ECCQQFG-ADVIMTSESCRNGTE-RCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKA   82 (215)
Q Consensus        11 d~ivV~td~--~~i~----~~~~~~g-~~v~~~~~~~~~~~~-~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~   82 (215)
                      .+|+|+.|+  ++..    +.++++. +.++.++..  .|.+ ....|++..  ..|+++++++|. ..+++.+.++++.
T Consensus        84 ~eiiVvdD~s~d~t~~~l~~~~~~~~~v~~i~~~~n--~Gka~aln~g~~~a--~~d~i~~lDaD~-~~~~d~L~~l~~~  158 (420)
T PRK11204         84 YEVIAINDGSSDNTGEILDRLAAQIPRLRVIHLAEN--QGKANALNTGAAAA--RSEYLVCIDGDA-LLDPDAAAYMVEH  158 (420)
T ss_pred             eEEEEEECCCCccHHHHHHHHHHhCCcEEEEEcCCC--CCHHHHHHHHHHHc--CCCEEEEECCCC-CCChhHHHHHHHH
Confidence            367776642  2233    3344433 445543434  3443 566777765  679999999999 5599999999999


Q ss_pred             HHcCCC
Q 027992           83 LQAAPD   88 (215)
Q Consensus        83 ~~~~~~   88 (215)
                      +.++++
T Consensus       159 ~~~~~~  164 (420)
T PRK11204        159 FLHNPR  164 (420)
T ss_pred             HHhCCC
Confidence            965444

>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase

Probab=90.61  E-value=6.3  Score=35.04  Aligned_cols=87  Identities=15%  Similarity=0.189  Sum_probs=51.7

Q ss_pred             CCCcEEEEcCcH---HHHHHHHHcCCe---EEeCCCCCCCchH-HHHHHHHHhc---CCCCEEEEecCCCCCCCHHHHHH
Q 027992            9 LFCGLVVATDDE---KIAECCQQFGAD---VIMTSESCRNGTE-RCNEALQKLE---KKYDIVVNIQGDEPLIEPEIIDG   78 (215)
Q Consensus         9 ~~d~ivV~td~~---~i~~~~~~~g~~---v~~~~~~~~~~~~-~i~~~l~~~~---~~~d~v~~~~~d~Pli~~~~i~~   78 (215)
                      .+++++|+|...   .+.+.+..+|..   ++..+..  .|++ .+..+...+.   ...+.++++.+|.|+..+..+.+
T Consensus        47 ~~~~iviv~~~~~~~~~~~~l~~~~~~~~~~i~Ep~~--~gTa~ai~~aa~~~~~~~~~~~~vlVl~~D~~i~~~~~f~~  124 (468)
T TIGR01479        47 PCSSPLVICNEEHRFIVAEQLREIGKLASNIILEPVG--RNTAPAIALAALLAARRNGEDPLLLVLAADHVITDEDAFQA  124 (468)
T ss_pred             CCcCcEEecCHHHHHHHHHHHHHcCCCcceEEecccc--cCchHHHHHHHHHHHHHHCCCcEEEEecCceeecCHHHHHH
Confidence            578888888643   345666666642   4444433  3443 3333333331   23457999999999998888888


Q ss_pred             HHHHHH--cCCCceEEeeccc
Q 027992           79 VVKALQ--AAPDAVFSTAVTS   97 (215)
Q Consensus        79 ~i~~~~--~~~~~~i~~~~~~   97 (215)
                      +++.+.  ...++++++...+
T Consensus       125 ~l~~~~~~a~~~~lvtlgi~p  145 (468)
T TIGR01479       125 AVKLAMPAAAEGKLVTFGIVP  145 (468)
T ss_pred             HHHHHHHHHhcCCEEEEEecC
Confidence            888652  1225555544333

This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.

>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]

Probab=90.16  E-value=12  Score=32.47  Aligned_cols=185  Identities=17%  Similarity=0.177  Sum_probs=98.4

Q ss_pred             cCCCCcEEEEcCcHHH--HHHHHH---c-------CCeEEeC-----CCCCCCchH-HHHHHHHHh-cCCCCEEEEecCC
Q 027992            7 SFLFCGLVVATDDEKI--AECCQQ---F-------GADVIMT-----SESCRNGTE-RCNEALQKL-EKKYDIVVNIQGD   67 (215)
Q Consensus         7 ~~~~d~ivV~td~~~i--~~~~~~---~-------g~~v~~~-----~~~~~~~~~-~i~~~l~~~-~~~~d~v~~~~~d   67 (215)
                      ...|.+|.|.|.....  -+....   +       |+.++..     .+.|-.|++ ++++=+..+ ..+.|+++++-||
T Consensus        49 NSGi~~I~VltQy~~~SL~~Hi~~G~~w~l~~~~~~v~ilp~~~~~~~~~wy~Gtadai~Qnl~~i~~~~~eyvlIlsgD  128 (393)
T COG0448          49 NSGIRRIGVLTQYKSHSLNDHIGRGWPWDLDRKNGGVFILPAQQREGGERWYEGTADAIYQNLLIIRRSDPEYVLILSGD  128 (393)
T ss_pred             ccCCCeEEEEeccchhHHHHHhhCCCccccccccCcEEEeCchhccCCCcceeccHHHHHHhHHHHHhcCCCEEEEecCC
Confidence            3568999999965443  222221   1       1222221     111333443 454433333 3578999999999


Q ss_pred             CCCCCHHHHHHHHHHHHcCCCceEEeecccCCCCccCCCCceEEEEcCCCceecccCCCCCCCCCCCCCCCCCeeEEeee
Q 027992           68 EPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGI  147 (215)
Q Consensus        68 ~Pli~~~~i~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ip~~~~~~~~q~~p~~~~~~~  147 (215)
                      .  +-.=+.+++++...+. ++.+++.+.++...+..... +- -.+++|++..|.+.+  ...    .++ -....++.
T Consensus       129 h--IYkmDy~~ml~~H~~~-gadiTv~~~~Vp~~eas~fG-im-~~D~~~~i~~F~eKp--~~~----~~~-~~laSMgi  196 (393)
T COG0448         129 H--IYKMDYSDMLDFHIES-GADVTVAVKEVPREEASRFG-VM-NVDENGRIIEFVEKP--ADG----PPS-NSLASMGI  196 (393)
T ss_pred             E--EEecCHHHHHHHHHHc-CCCEEEEEEECChHhhhhcC-ce-EECCCCCEEeeeecc--CcC----Ccc-cceeeeee
Confidence            6  4456788999988642 34445445555432221112 22 237888887665432  110    011 02467899


Q ss_pred             eeechHHHhhC-cCCC---CCCCCCccchhhhh-hhhcCCeeEEEEecCCCCCCCCHHHHHHHH
Q 027992          148 QSYDSNFLKIY-PGLH---PTPLQLEEDLEQLK-VLENGYKMKVIKVDHEAHGVDAPEDVEKIE  206 (215)
Q Consensus       148 ~~~~~~~l~~~-~~~~---~~~~~~~e~l~~~~-~~~~g~~v~~~~~~~~~idIdt~~Dl~~ae  206 (215)
                      |+|..++|.++ ..-.   .+......  +..+ .++.|. +..++-..---||.|-+-+..|-
T Consensus       197 YIf~~~~L~~~L~~~~~~~~~~~Dfgk--diIp~~~~~~~-v~AY~f~gYw~dVgTi~syy~aN  257 (393)
T COG0448         197 YIFNTDLLKELLEEDAKDPNSSHDFGK--DIIPKLLERGK-VYAYEFSGYWRDVGTIDSYYEAN  257 (393)
T ss_pred             EEEcHHHHHHHHHHHhcccCccccchH--HHHHHHHhcCC-EEEEeccchhhhcccHHHHHHhh
Confidence            99999887653 2111   11111111  2222 334555 77777655667899988887774

>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases

Probab=89.53  E-value=2.2  Score=30.76  Aligned_cols=73  Identities=16%  Similarity=0.270  Sum_probs=48.0

Q ss_pred             CCCcEEEEcCcH--HHHHHHHHc-----CCeEEeCCCCCCCchH-HHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHH
Q 027992            9 LFCGLVVATDDE--KIAECCQQF-----GADVIMTSESCRNGTE-RCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVV   80 (215)
Q Consensus         9 ~~d~ivV~td~~--~i~~~~~~~-----g~~v~~~~~~~~~~~~-~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i   80 (215)
                      ...+|+|+-|..  +..++++++     +++++.++...  |.. ....|++..  ..++++++++|.=+... .+..++
T Consensus        26 ~~~eiivvdd~s~d~~~~~~~~~~~~~~~i~~i~~~~n~--g~~~~~n~~~~~a--~~~~i~~ld~D~~~~~~-~l~~l~  100 (169)
T PF00535_consen   26 PDFEIIVVDDGSTDETEEILEEYAESDPNIRYIRNPENL--GFSAARNRGIKHA--KGEYILFLDDDDIISPD-WLEELV  100 (169)
T ss_dssp             CEEEEEEEECS-SSSHHHHHHHHHCCSTTEEEEEHCCCS--HHHHHHHHHHHH----SSEEEEEETTEEE-TT-HHHHHH
T ss_pred             CCEEEEEeccccccccccccccccccccccccccccccc--ccccccccccccc--ceeEEEEeCCCceEcHH-HHHHHH
Confidence            446777777643  555666654     45666666553  544 466777776  45699999999655444 999999


Q ss_pred             HHHHcC
Q 027992           81 KALQAA   86 (215)
Q Consensus        81 ~~~~~~   86 (215)
                      +.+.++
T Consensus       101 ~~~~~~  106 (169)
T PF00535_consen  101 EALEKN  106 (169)
T ss_dssp             HHHHHC
T ss_pred             HHHHhC
Confidence            999763

These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....

>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily

Probab=89.52  E-value=3.6  Score=32.56  Aligned_cols=70  Identities=21%  Similarity=0.358  Sum_probs=46.9

Q ss_pred             cEEEEcC--cHHHHHHHHHcC---CeEEeCCCCCCCchHHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHHHHc
Q 027992           12 GLVVATD--DEKIAECCQQFG---ADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA   85 (215)
Q Consensus        12 ~ivV~td--~~~i~~~~~~~g---~~v~~~~~~~~~~~~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~~~~   85 (215)
                      +|+|+-|  ++...+++++++   +.++..+.. .|.......|++..  ..|+++++++|.-+ .++.+.++++.+..
T Consensus        62 eiivvdd~s~d~t~~~~~~~~~~~v~~i~~~~~-~g~~~a~n~gi~~a--~~d~i~~lD~D~~~-~~~~l~~l~~~~~~  136 (251)
T cd06439          62 EIIVVSDGSTDGTAEIAREYADKGVKLLRFPER-RGKAAALNRALALA--TGEIVVFTDANALL-DPDALRLLVRHFAD  136 (251)
T ss_pred             EEEEEECCCCccHHHHHHHHhhCcEEEEEcCCC-CChHHHHHHHHHHc--CCCEEEEEccccCc-CHHHHHHHHHHhcC
Confidence            5777664  244555666654   445544433 22233456677766  45999999999988 59999999999863

This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.

>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan

Probab=88.52  E-value=5.4  Score=31.21  Aligned_cols=70  Identities=16%  Similarity=0.261  Sum_probs=43.6

Q ss_pred             CcEEEEcC--cHHHHHHHHHcC-----CeEEeCCCCCCCchHHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHHH
Q 027992           11 CGLVVATD--DEKIAECCQQFG-----ADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKAL   83 (215)
Q Consensus        11 d~ivV~td--~~~i~~~~~~~g-----~~v~~~~~~~~~~~~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~~   83 (215)
                      .+|+|+-+  .++..+.++.++     +.++..+ .. +.......|++..  ..|+++++++|. ..++..+.++++.+
T Consensus        32 ~evivvd~~s~d~~~~~~~~~~~~~~~v~~i~~~-~~-~~~~a~N~g~~~a--~~d~v~~lD~D~-~~~~~~l~~~~~~~  106 (249)
T cd02525          32 IEIIVVDGGSTDGTREIVQEYAAKDPRIRLIDNP-KR-IQSAGLNIGIRNS--RGDIIIRVDAHA-VYPKDYILELVEAL  106 (249)
T ss_pred             cEEEEEeCCCCccHHHHHHHHHhcCCeEEEEeCC-CC-CchHHHHHHHHHh--CCCEEEEECCCc-cCCHHHHHHHHHHH
Confidence            36666653  233344444433     3334332 21 2233456666665  679999999998 67999999999887


Q ss_pred             Hc
Q 027992           84 QA   85 (215)
Q Consensus        84 ~~   85 (215)
                      ..
T Consensus       107 ~~  108 (249)
T cd02525         107 KR  108 (249)
T ss_pred             hc
Confidence            64

Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.

>cd06423 CESA_like CESA_like is the cellulose synthase superfamily

Probab=88.27  E-value=6.5  Score=28.25  Aligned_cols=74  Identities=27%  Similarity=0.422  Sum_probs=45.2

Q ss_pred             CCcEEEEcC--cHHHHHHHHHcCC------eEEeCCCCCCCchH-HHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHH
Q 027992           10 FCGLVVATD--DEKIAECCQQFGA------DVIMTSESCRNGTE-RCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVV   80 (215)
Q Consensus        10 ~d~ivV~td--~~~i~~~~~~~g~------~v~~~~~~~~~~~~-~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i   80 (215)
                      ..+|+|+-+  ++...+.+.++..      .++..+..  .|.. ....|++..  ..|+++++++|. .+.++.|..++
T Consensus        26 ~~~iivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~~n~~~~~~--~~~~i~~~D~D~-~~~~~~l~~~~  100 (180)
T cd06423          26 KLEVIVVDDGSTDDTLEILEELAALYIRRVLVVRDKEN--GGKAGALNAGLRHA--KGDIVVVLDADT-ILEPDALKRLV  100 (180)
T ss_pred             ceEEEEEeCCCccchHHHHHHHhccccceEEEEEeccc--CCchHHHHHHHHhc--CCCEEEEECCCC-CcChHHHHHHH
Confidence            346777664  2333444444432      22333333  3444 455677765  679999999998 55899999997


Q ss_pred             HHHHcCCC
Q 027992           81 KALQAAPD   88 (215)
Q Consensus        81 ~~~~~~~~   88 (215)
                      ..+..+++
T Consensus       101 ~~~~~~~~  108 (180)
T cd06423         101 VPFFADPK  108 (180)
T ss_pred             HHhccCCC
Confidence            77754444

The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the

>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function

Probab=85.64  E-value=10  Score=29.14  Aligned_cols=38  Identities=18%  Similarity=0.199  Sum_probs=30.5

Q ss_pred             HHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHHHHcC
Q 027992           46 RCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAA   86 (215)
Q Consensus        46 ~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~~~~~   86 (215)
                      .+..|+...  ..|+++++++|. .+.++.|+++++.+...
T Consensus        73 a~n~g~~~~--~~d~i~~~D~D~-~~~~~~l~~l~~~~~~~  110 (229)
T cd04192          73 ALTTAIKAA--KGDWIVTTDADC-VVPSNWLLTFVAFIQKE  110 (229)
T ss_pred             HHHHHHHHh--cCCEEEEECCCc-ccCHHHHHHHHHHhhcC
Confidence            455666655  579999999999 66899999999988653

GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.

>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase

Probab=85.43  E-value=12  Score=29.66  Aligned_cols=37  Identities=19%  Similarity=0.259  Sum_probs=30.3

Q ss_pred             HHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHHHHc
Q 027992           46 RCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA   85 (215)
Q Consensus        46 ~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~~~~   85 (215)
                      ....|+...  ..|+++++++|.- ..++.|.++++.+..
T Consensus        84 a~n~g~~~a--~g~~i~~lD~D~~-~~~~~l~~l~~~~~~  120 (243)
T PLN02726         84 AYIHGLKHA--SGDFVVIMDADLS-HHPKYLPSFIKKQRE  120 (243)
T ss_pred             HHHHHHHHc--CCCEEEEEcCCCC-CCHHHHHHHHHHHHh
Confidence            456677665  5689999999998 599999999998864

>COG2121 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=84.80  E-value=5.7  Score=31.17  Aligned_cols=56  Identities=27%  Similarity=0.399  Sum_probs=41.6

Q ss_pred             CcHHHHHHHHHcCCeEEeCCCCCCCchHHHHHHHHHhcCCCCEEEEecCCC-CCCCHH
Q 027992           18 DDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDE-PLIEPE   74 (215)
Q Consensus        18 d~~~i~~~~~~~g~~v~~~~~~~~~~~~~i~~~l~~~~~~~d~v~~~~~d~-Pli~~~   74 (215)
                      |.+-++.+++++|+.+++.+.+ -+|..++++.+.++....++++..++-. |..+..
T Consensus        79 DGEliA~~l~kfG~~~IRGSs~-Kgg~~Alr~l~k~Lk~G~~i~itpDgPkGp~~~~~  135 (214)
T COG2121          79 DGELIARLLEKFGLRVIRGSSN-KGGISALRALLKALKQGKSIAITPDGPKGPVHKIG  135 (214)
T ss_pred             CHHHHHHHHHHcCceEEeccCC-cchHHHHHHHHHHHhCCCcEEEcCCCCCCCceecc
Confidence            5677889999999999876643 2556678888888877778887776666 555543

>COG1210 GalU UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]

Probab=84.29  E-value=22  Score=29.35  Aligned_cols=161  Identities=11%  Similarity=0.041  Sum_probs=88.0

Q ss_pred             CCeE-EeCCCCCCCchH-HHHHHHHHhcCCCCEEEEecCCCCCCC-HHHHHHHHHHHHcCCCceEEeecccCCCCccCCC
Q 027992           30 GADV-IMTSESCRNGTE-RCNEALQKLEKKYDIVVNIQGDEPLIE-PEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDP  106 (215)
Q Consensus        30 g~~v-~~~~~~~~~~~~-~i~~~l~~~~~~~d~v~~~~~d~Pli~-~~~i~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~  106 (215)
                      ++++ +.|..+- -|.. .+.+|=..+  ..+-+.++.||-=+.+ +..+.++++.+.+...|++++..++..  + -+.
T Consensus        96 ~~~i~~vRQ~e~-~GLGhAVl~A~~~v--g~EpFaVlL~Ddl~~~~~~~l~qmi~~ye~~g~svi~v~ev~~e--~-v~k  169 (291)
T COG1210          96 LVTISFVRQKEP-LGLGHAVLCAKPFV--GDEPFAVLLPDDLVDSEKPCLKQMIELYEETGGSVIGVEEVPPE--D-VSK  169 (291)
T ss_pred             CceEEEEecCCC-CcchhHHHhhhhhc--CCCceEEEeCCeeecCCchHHHHHHHHHHHhCCcEEEEEECCHH--H-Ccc
Confidence            3444 4455332 4544 456665555  3456777778877666 678889999998766788887655421  1 111


Q ss_pred             CceEEEE----cCCC--ceecccCCCCCCCCCCCCCCCCCe-eEEeeeeeechHHHhhCcCCCCCCCCCccc-h-hhhhh
Q 027992          107 NRVKCVV----DNHG--YAIYFSRGLIPYNKSGKVNPQFPY-LLHLGIQSYDSNFLKIYPGLHPTPLQLEED-L-EQLKV  177 (215)
Q Consensus       107 ~~~~~~~----~~~g--~~~~~~~~~ip~~~~~~~~q~~p~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~-l-~~~~~  177 (215)
                      ..  ++.    .++|  .+..+-+.  |      ...+.|. ....+.|++..+.+.....+..+.  ..|- | +....
T Consensus       170 YG--vi~~g~~~~~~~~~v~~~VEK--P------~~~~APSnlai~GRYil~p~IFd~L~~~~~G~--ggEiQLTDai~~  237 (291)
T COG1210         170 YG--VIDPGEPVEKGVYKVKGMVEK--P------KPEEAPSNLAIVGRYVLTPEIFDILEETKPGA--GGEIQLTDAIKK  237 (291)
T ss_pred             cc--eEecCccccCCeEEEEEEEEC--C------CCCCCCcceeeeeeeecCHHHHHHHhhCCCCC--CCEeeHHHHHHH
Confidence            22  221    1122  11111111  1      1234553 456667999776544333332221  1222 2 33443


Q ss_pred             hhcCCeeEEEEecCCCCCCCCHHHHHHHHHH
Q 027992          178 LENGYKMKVIKVDHEAHGVDAPEDVEKIESF  208 (215)
Q Consensus       178 ~~~g~~v~~~~~~~~~idIdt~~Dl~~ae~i  208 (215)
                      +..-..+..+......+|+-++..|-.|-.-
T Consensus       238 L~~~~~v~a~~~~GkryD~G~k~Gyi~a~v~  268 (291)
T COG1210         238 LLKKEPVLAYVFEGKRYDCGSKLGYIKANVE  268 (291)
T ss_pred             HHhhCcEEEEEecccEEccCCcccHHHHHHH
Confidence            3233677777777889999999999777433

>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation

Probab=84.23  E-value=17  Score=27.90  Aligned_cols=79  Identities=13%  Similarity=0.141  Sum_probs=47.9

Q ss_pred             CCcEEEEcCc--HH----HHHHHHHcCC--eEEeCCCCCCCchHHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHH
Q 027992           10 FCGLVVATDD--EK----IAECCQQFGA--DVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVK   81 (215)
Q Consensus        10 ~d~ivV~td~--~~----i~~~~~~~g~--~v~~~~~~~~~~~~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~   81 (215)
                      ..+|+|+-|.  +.    ++++.++++.  .++..+... |-...+..|++..  ..|+++++++|.- ..++.+.++++
T Consensus        30 ~~eiivvdd~S~D~t~~~~~~~~~~~~~~i~~i~~~~n~-G~~~a~~~g~~~a--~gd~i~~ld~D~~-~~~~~l~~l~~  105 (211)
T cd04188          30 SYEIIVVDDGSKDGTAEVARKLARKNPALIRVLTLPKNR-GKGGAVRAGMLAA--RGDYILFADADLA-TPFEELEKLEE  105 (211)
T ss_pred             CEEEEEEeCCCCCchHHHHHHHHHhCCCcEEEEEcccCC-CcHHHHHHHHHHh--cCCEEEEEeCCCC-CCHHHHHHHHH
Confidence            3467777532  22    3344444553  344444332 3334567787776  4599999999986 67999999999


Q ss_pred             HHHc-CCCceEE
Q 027992           82 ALQA-APDAVFS   92 (215)
Q Consensus        82 ~~~~-~~~~~i~   92 (215)
                      .+.. ..+.+++
T Consensus       106 ~~~~~~~~~v~g  117 (211)
T cd04188         106 ALKTSGYDIAIG  117 (211)
T ss_pred             HHhccCCcEEEE
Confidence            8643 3344333

UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.

>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis

Probab=83.77  E-value=17  Score=27.61  Aligned_cols=35  Identities=23%  Similarity=0.422  Sum_probs=28.5

Q ss_pred             HHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHHHH
Q 027992           47 CNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQ   84 (215)
Q Consensus        47 i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~~~   84 (215)
                      +..|++..  ..|+++++++|.- +++..|.++++.+.
T Consensus        78 ~n~g~~~a--~~d~i~~~D~D~~-~~~~~l~~l~~~~~  112 (196)
T cd02520          78 LIKGYEEA--RYDILVISDSDIS-VPPDYLRRMVAPLM  112 (196)
T ss_pred             HHHHHHhC--CCCEEEEECCCce-EChhHHHHHHHHhh
Confidence            45666654  5799999999985 59999999999874

UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.

>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

Probab=83.22  E-value=13  Score=25.85  Aligned_cols=75  Identities=20%  Similarity=0.369  Sum_probs=43.8

Q ss_pred             CCcEEEEcCc--HHHHHHHHHcC-----CeEEeCCCCCCCchH-HHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHH
Q 027992           10 FCGLVVATDD--EKIAECCQQFG-----ADVIMTSESCRNGTE-RCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVK   81 (215)
Q Consensus        10 ~d~ivV~td~--~~i~~~~~~~g-----~~v~~~~~~~~~~~~-~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~   81 (215)
                      ..+|+|++++  ++..+...+..     ...+..+..  .|.. ....++...  ..|.++++++|..+ .++.+..++.
T Consensus        26 ~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~~~~~~~~~--~~d~v~~~d~D~~~-~~~~~~~~~~  100 (156)
T cd00761          26 NFEVIVVDDGSTDGTLEILEEYAKKDPRVIRVINEEN--QGLAAARNAGLKAA--RGEYILFLDADDLL-LPDWLERLVA  100 (156)
T ss_pred             ceEEEEEeCCCCccHHHHHHHHHhcCCCeEEEEecCC--CChHHHHHHHHHHh--cCCEEEEECCCCcc-CccHHHHHHH
Confidence            5677777753  44444444432     222333322  3443 455666665  67999999999986 5667777655


Q ss_pred             HHHcCCCc
Q 027992           82 ALQAAPDA   89 (215)
Q Consensus        82 ~~~~~~~~   89 (215)
                      .+..+.+.
T Consensus       101 ~~~~~~~~  108 (156)
T cd00761         101 ELLADPEA  108 (156)
T ss_pred             HHhcCCCc
Confidence            55443343

Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als

>PRK14583 hmsR N-glycosyltransferase; Provisional

Probab=83.16  E-value=18  Score=31.83  Aligned_cols=73  Identities=18%  Similarity=0.265  Sum_probs=46.0

Q ss_pred             CcEEEEcC--cH----HHHHHHHHc-CCeEEeCCCCCCCchH-HHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHH
Q 027992           11 CGLVVATD--DE----KIAECCQQF-GADVIMTSESCRNGTE-RCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKA   82 (215)
Q Consensus        11 d~ivV~td--~~----~i~~~~~~~-g~~v~~~~~~~~~~~~-~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~   82 (215)
                      .+|+|+.|  ++    .+.+.++++ .+.++.....  .|.+ ....|+...  ..|+++++++|. ..+++.+.++++.
T Consensus       105 ~eIivVdDgs~D~t~~~~~~~~~~~~~v~vv~~~~n--~Gka~AlN~gl~~a--~~d~iv~lDAD~-~~~~d~L~~lv~~  179 (444)
T PRK14583        105 IEVIAINDGSSDDTAQVLDALLAEDPRLRVIHLAHN--QGKAIALRMGAAAA--RSEYLVCIDGDA-LLDKNAVPYLVAP  179 (444)
T ss_pred             eEEEEEECCCCccHHHHHHHHHHhCCCEEEEEeCCC--CCHHHHHHHHHHhC--CCCEEEEECCCC-CcCHHHHHHHHHH
Confidence            36777754  22    233344444 3455443323  3444 456666654  679999999998 5699999999998


Q ss_pred             HHcCCC
Q 027992           83 LQAAPD   88 (215)
Q Consensus        83 ~~~~~~   88 (215)
                      +.++++
T Consensus       180 ~~~~~~  185 (444)
T PRK14583        180 LIANPR  185 (444)
T ss_pred             HHhCCC
Confidence            865444

>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis

Probab=83.09  E-value=18  Score=27.30  Aligned_cols=45  Identities=33%  Similarity=0.458  Sum_probs=33.5

Q ss_pred             CchH-HHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHHHHcCCCc
Q 027992           42 NGTE-RCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDA   89 (215)
Q Consensus        42 ~~~~-~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~~~~~~~~   89 (215)
                      .|.. ....|++..  ..|+++++++|. ..+++.++.+++.+..+++.
T Consensus        69 ~g~~~a~n~g~~~a--~~d~i~~ld~D~-~~~~~~l~~~~~~~~~~~~~  114 (202)
T cd04184          69 GGISAATNSALELA--TGEFVALLDHDD-ELAPHALYEVVKALNEHPDA  114 (202)
T ss_pred             CCHHHHHHHHHHhh--cCCEEEEECCCC-cCChHHHHHHHHHHHhCCCC
Confidence            4544 355677665  569999999999 66999999999998443443

The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.

>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans

Probab=82.99  E-value=14  Score=30.38  Aligned_cols=57  Identities=9%  Similarity=0.112  Sum_probs=40.2

Q ss_pred             CCeEEeCCCCCCCchH-HHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHHHHcCCCceE
Q 027992           30 GADVIMTSESCRNGTE-RCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVF   91 (215)
Q Consensus        30 g~~v~~~~~~~~~~~~-~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~~~~~~~~~i   91 (215)
                      .++++..+..  .|.+ ....|++..  ..|+++++++|.=+ ++..|+++++.+..++..++
T Consensus        59 ~v~vi~~~~n--~G~~~a~N~g~~~A--~gd~i~fLD~D~~~-~~~wL~~ll~~l~~~~~~~v  116 (299)
T cd02510          59 KVKVLRLKKR--EGLIRARIAGARAA--TGDVLVFLDSHCEV-NVGWLEPLLARIAENRKTVV  116 (299)
T ss_pred             cEEEEEcCCC--CCHHHHHHHHHHHc--cCCEEEEEeCCccc-CccHHHHHHHHHHhCCCeEE
Confidence            3555554433  4544 345566665  56999999999987 89999999999976555433

UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.

>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function

Probab=82.37  E-value=16  Score=26.26  Aligned_cols=75  Identities=20%  Similarity=0.276  Sum_probs=48.0

Q ss_pred             CCcEEEEcCc--HHHHHHHHHcC--CeEEeCCCCCCCchH-HHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHHHH
Q 027992           10 FCGLVVATDD--EKIAECCQQFG--ADVIMTSESCRNGTE-RCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQ   84 (215)
Q Consensus        10 ~d~ivV~td~--~~i~~~~~~~g--~~v~~~~~~~~~~~~-~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~~~   84 (215)
                      ..+|+|+-+.  +...+.+.+..  +.++..+..  .|.. ....|++..  ..|+++++++|.= .+++.+..+++.+.
T Consensus        26 ~~~iiivdd~s~~~~~~~~~~~~~~~~~~~~~~~--~g~~~a~n~~~~~~--~~~~i~~~D~D~~-~~~~~l~~~~~~~~  100 (166)
T cd04186          26 DFEVIVVDNASTDGSVELLRELFPEVRLIRNGEN--LGFGAGNNQGIREA--KGDYVLLLNPDTV-VEPGALLELLDAAE  100 (166)
T ss_pred             CeEEEEEECCCCchHHHHHHHhCCCeEEEecCCC--cChHHHhhHHHhhC--CCCEEEEECCCcE-ECccHHHHHHHHHH
Confidence            4567776653  33445555544  444444333  3443 455676665  6799999999985 57899999999876


Q ss_pred             cCCCc
Q 027992           85 AAPDA   89 (215)
Q Consensus        85 ~~~~~   89 (215)
                      ++++.
T Consensus       101 ~~~~~  105 (166)
T cd04186         101 QDPDV  105 (166)
T ss_pred             hCCCc
Confidence            55443

GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.

>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1

Probab=81.92  E-value=21  Score=27.38  Aligned_cols=75  Identities=21%  Similarity=0.362  Sum_probs=45.9

Q ss_pred             CcEEEEcCc--HHHHH----HHHHcC-CeEEeCCCCCCCchH-HHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHH
Q 027992           11 CGLVVATDD--EKIAE----CCQQFG-ADVIMTSESCRNGTE-RCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKA   82 (215)
Q Consensus        11 d~ivV~td~--~~i~~----~~~~~g-~~v~~~~~~~~~~~~-~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~   82 (215)
                      -+|||+=|.  +...+    +.++.+ +.++.....  .|.+ +...|+...  ..|+++++++|.-+ .++.+..+++.
T Consensus        28 ~eiiiVDd~S~d~t~~~~~~~~~~~~~i~~~~~~~n--~G~~~a~n~g~~~a--~gd~i~~lD~D~~~-~~~~l~~l~~~  102 (224)
T cd06442          28 YEIIVVDDNSPDGTAEIVRELAKEYPRVRLIVRPGK--RGLGSAYIEGFKAA--RGDVIVVMDADLSH-PPEYIPELLEA  102 (224)
T ss_pred             eEEEEEeCCCCCChHHHHHHHHHhCCceEEEecCCC--CChHHHHHHHHHHc--CCCEEEEEECCCCC-CHHHHHHHHHH
Confidence            466666532  22233    333333 244444433  4544 456787776  45899999999765 79999999998


Q ss_pred             HH-cCCCce
Q 027992           83 LQ-AAPDAV   90 (215)
Q Consensus        83 ~~-~~~~~~   90 (215)
                      +. .+.+.+
T Consensus       103 ~~~~~~~~v  111 (224)
T cd06442         103 QLEGGADLV  111 (224)
T ss_pred             HhcCCCCEE
Confidence            64 344433

Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,

>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily

Probab=80.81  E-value=25  Score=27.62  Aligned_cols=72  Identities=18%  Similarity=0.274  Sum_probs=44.8

Q ss_pred             cEEEEcC--cHHHHHHHHHcCC----eEEeCCCCCCCchH-HHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHHHH
Q 027992           12 GLVVATD--DEKIAECCQQFGA----DVIMTSESCRNGTE-RCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQ   84 (215)
Q Consensus        12 ~ivV~td--~~~i~~~~~~~g~----~v~~~~~~~~~~~~-~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~~~   84 (215)
                      +|+|+-|  ++...+++++++.    .++..+..-..|.+ ....|+...  ..|+|+++++|.= +.++.+.++++.+.
T Consensus        34 eiivVdd~s~d~t~~i~~~~~~~~~~~i~~~~~~~~~G~~~a~n~g~~~a--~gd~i~~~DaD~~-~~~~~l~~~~~~~~  110 (241)
T cd06427          34 DVKLLLEEDDEETIAAARALRLPSIFRVVVVPPSQPRTKPKACNYALAFA--RGEYVVIYDAEDA-PDPDQLKKAVAAFA  110 (241)
T ss_pred             EEEEEECCCCchHHHHHHHhccCCCeeEEEecCCCCCchHHHHHHHHHhc--CCCEEEEEcCCCC-CChHHHHHHHHHHH
Confidence            4555442  3445556666542    34322211112333 566777765  5699999999986 77999999999997


Q ss_pred             cC
Q 027992           85 AA   86 (215)
Q Consensus        85 ~~   86 (215)
                      ++
T Consensus       111 ~~  112 (241)
T cd06427         111 RL  112 (241)
T ss_pred             hc
Confidence            53

The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot

>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan

Probab=80.81  E-value=23  Score=28.72  Aligned_cols=57  Identities=18%  Similarity=0.284  Sum_probs=39.3

Q ss_pred             CeEEeCCCCCCCchHHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHHHHcCCC
Q 027992           31 ADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPD   88 (215)
Q Consensus        31 ~~v~~~~~~~~~~~~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~~~~~~~   88 (215)
                      +.++.|+.......+.+.+++.......|+++++++|. ...|+.|.+++..|..++.
T Consensus        69 v~~~~r~~~~g~Kag~l~~~~~~~~~~~~~i~~~DaD~-~~~p~~l~~~v~~~~~~~~  125 (254)
T cd04191          69 IYYRRRRENTGRKAGNIADFCRRWGSRYDYMVVLDADS-LMSGDTIVRLVRRMEANPR  125 (254)
T ss_pred             EEEEEcCCCCCccHHHHHHHHHHhCCCCCEEEEEeCCC-CCCHHHHHHHHHHHHhCCC
Confidence            34455664432233556677665434679999999998 5679999999999975444

Periplasmic Glucan Biosynthesis protein ModH is a glucosyltransferase that catalyzes the elongation of beta-1,2 polyglucose chains of glucan, requiring a beta-glucoside as a primer and UDP-glucose as a substrate. Glucans are composed of 5 to 10 units of glucose forming a highly branched structure, where beta-1,2-linked glucose constitutes a linear backbone to which branches are attached by beta-1,6 linkages. In Escherichia coli, glucans are located in the periplasmic space, functioning as regulator of osmolarity. It is synthesized at a maximum when cells are grown in a medium with low osmolarity. It has been shown to span the cytoplasmic membrane.

>PRK05454 glucosyltransferase MdoH; Provisional

Probab=80.78  E-value=22  Score=33.34  Aligned_cols=76  Identities=14%  Similarity=0.286  Sum_probs=49.0

Q ss_pred             cEEEEcCc--HH--------HHHHHHHcC--CeE--EeCCCCCCCchHHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHH
Q 027992           12 GLVVATDD--EK--------IAECCQQFG--ADV--IMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIID   77 (215)
Q Consensus        12 ~ivV~td~--~~--------i~~~~~~~g--~~v--~~~~~~~~~~~~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~   77 (215)
                      +|+|..|.  ++        +.+++++++  ..+  ..|..........+.++++.....+|+++++|+|+ ..+++.+.
T Consensus       161 e~~vLdD~~d~~~~~~e~~~~~~L~~~~~~~~~i~yr~R~~n~~~KaGNl~~~~~~~~~~~eyivvLDADs-~m~~d~L~  239 (691)
T PRK05454        161 DFFILSDTRDPDIAAAEEAAWLELRAELGGEGRIFYRRRRRNVGRKAGNIADFCRRWGGAYDYMVVLDADS-LMSGDTLV  239 (691)
T ss_pred             EEEEEECCCChhHHHHHHHHHHHHHHhcCCCCcEEEEECCcCCCccHHHHHHHHHhcCCCcCEEEEEcCCC-CCCHHHHH
Confidence            56777752  33        235566663  234  23333321223357777776656789999999998 55689999


Q ss_pred             HHHHHHHcCCC
Q 027992           78 GVVKALQAAPD   88 (215)
Q Consensus        78 ~~i~~~~~~~~   88 (215)
                      +++..|..+++
T Consensus       240 ~lv~~m~~dP~  250 (691)
T PRK05454        240 RLVRLMEANPR  250 (691)
T ss_pred             HHHHHHhhCcC
Confidence            99999975554

>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function

Probab=80.67  E-value=22  Score=26.87  Aligned_cols=43  Identities=21%  Similarity=0.295  Sum_probs=30.9

Q ss_pred             chH-HHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHHHHcCCC
Q 027992           43 GTE-RCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPD   88 (215)
Q Consensus        43 ~~~-~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~~~~~~~   88 (215)
                      |.. .+..|+...  ..|+|+++++|- .+.++.|..+++.+...+.
T Consensus        66 G~~~~~n~g~~~~--~g~~v~~ld~Dd-~~~~~~l~~~~~~~~~~~~  109 (214)
T cd04196          66 GVARNFESLLQAA--DGDYVFFCDQDD-IWLPDKLERLLKAFLKDDK  109 (214)
T ss_pred             cHHHHHHHHHHhC--CCCEEEEECCCc-ccChhHHHHHHHHHhcCCC
Confidence            443 455666654  679999999996 5579999999998644333

GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.

>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily

Probab=80.31  E-value=21  Score=26.36  Aligned_cols=72  Identities=24%  Similarity=0.299  Sum_probs=44.5

Q ss_pred             CCcEEEEcCc--HHHHHHHHHcCC-----eEEeCCCCCCCchHHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHH
Q 027992           10 FCGLVVATDD--EKIAECCQQFGA-----DVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKA   82 (215)
Q Consensus        10 ~d~ivV~td~--~~i~~~~~~~g~-----~v~~~~~~~~~~~~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~   82 (215)
                      ..+|+|+-+.  +...++++.++.     .++..+... |-......|+...  ..|+++++++|.-+ +++.++++++.
T Consensus        28 ~~eiivvd~~s~d~~~~~~~~~~~~~~~~~~~~~~~n~-G~~~a~n~g~~~a--~gd~i~~lD~D~~~-~~~~l~~l~~~  103 (185)
T cd04179          28 DYEIIVVDDGSTDGTAEIARELAARVPRVRVIRLSRNF-GKGAAVRAGFKAA--RGDIVVTMDADLQH-PPEDIPKLLEK  103 (185)
T ss_pred             CEEEEEEcCCCCCChHHHHHHHHHhCCCeEEEEccCCC-CccHHHHHHHHHh--cCCEEEEEeCCCCC-CHHHHHHHHHH
Confidence            4677777642  333444444322     224344332 2233456677665  34999999999865 89999999998


Q ss_pred             HHc
Q 027992           83 LQA   85 (215)
Q Consensus        83 ~~~   85 (215)
                      +..
T Consensus       104 ~~~  106 (185)
T cd04179         104 LLE  106 (185)
T ss_pred             Hhc
Confidence            643

DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	215
3oam_A	252	Crystal Structure Of Cytidylyltransferase From Vibr		1e-35
1vic_A	262	Crystal Structure Of Cmp-kdo Synthetase Length = 26		4e-35
3duv_A	262	Crystal Structure Of 3-Deoxy-Manno-Octulosonate Cyt		5e-34
1vh3_A	262	Crystal Structure Of Cmp-kdo Synthetase Length = 26		5e-34
3k8d_A	264	Crystal Structure Of E. Coli Lipopolysaccharide Spe		3e-33
1vh1_A	256	Crystal Structure Of Cmp-Kdo Synthetase Length = 25		4e-31
1h6j_A	245	The Three-Dimensional Structure Of Capsule-Specific		1e-28
4fcu_A	253	1.9 Angstrom Crystal Structure Of 3-Deoxy-Manno-Oct		5e-27
3pol_A	276	2.3 Angstrom Crystal Structure Of 3-deoxy-manno-oct		5e-27
3jtj_A	253	3-Deoxy-Manno-Octulosonate Cytidylyltransferase Fro		2e-26
2y6p_A	234	Evidence For A Two-Metal-Ion-Mechanism In The Kdo-C		4e-24
3tqd_A	256	Structure Of The 3-Deoxy-D-Manno-Octulosonate Cytid		4e-24

>pdb|3OAM|A Chain A, Crystal Structure Of Cytidylyltransferase From Vibrio Cholerae Length = 252

Iteration: 1
 Score =  145 bits (367), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 85/207 (41%), Positives = 121/207 (58%), Gaps = 8/207 (3%)
Query: 13  LVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLI 71
           +++ATDDE++ +  Q FG  V MTS + ++GTER  E + K+    D IVVN+QGDEPLI
Sbjct: 45  VIIATDDERVEQAVQAFGGVVCMTSPNHQSGTERLAEVVAKMAIPADHIVVNVQGDEPLI 104
Query: 72  EPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYN- 130
            P II  V   L A    + + AV      + F+PN VK + D  GYA+YFSR  IP++ 
Sbjct: 105 PPAIIRQVADNLAACSAPMATLAVEIEDEAEVFNPNAVKVITDKSGYALYFSRATIPWDR 164
Query: 131 ----KSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKV 186
               K+ K   Q P L H+GI +Y + F+  Y    P+ L+  E LEQL+VL +G K+ V
Sbjct: 165 DNFAKADKAIVQ-PLLRHIGIYAYRAGFINTYLDWQPSQLEKIECLEQLRVLWHGEKIHV 223
Query: 187 -IKVDHEAHGVDAPEDVEKIESFMRER 212
            + ++    GVD PED+E +   + ER
Sbjct: 224 AVALEAPPAGVDTPEDLEVVRRIVAER 250

>pdb|1VIC|A Chain A, Crystal Structure Of Cmp-kdo Synthetase Length = 262

Iteration: 1
 Score =  144 bits (363), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 85/207 (41%), Positives = 123/207 (59%), Gaps = 10/207 (4%)
Query: 13  LVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLE-KKYDIVVNIQGDEPLI 71
           +++ATD+E +A+  + FGA+V MTS +  +GTER  E ++KL     +I+VNIQGDEPLI
Sbjct: 45  VIIATDNENVADVAKSFGAEVCMTSVNHNSGTERLAEVVEKLAIPDNEIIVNIQGDEPLI 104
Query: 72  EPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNK 131
            P I+  V   L      + S AV     E+ F+PN VK + D  GY +YFSR +IPY++
Sbjct: 105 PPVIVRQVADNLAKFNVNMASLAVKIHDAEELFNPNAVKVLTDKDGYVLYFSRSVIPYDR 164
Query: 132 SGKVNPQ--------FPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYK 183
              +N Q          YL H+GI +Y + F+K Y    PT L+  E LEQL+VL NG +
Sbjct: 165 DQFMNLQDVQKVQLSDAYLRHIGIYAYRAGFIKQYVQWAPTQLENLEKLEQLRVLYNGER 224
Query: 184 MKV-IKVDHEAHGVDAPEDVEKIESFM 209
           + V +  +  A GVD  ED+EK+ + +
Sbjct: 225 IHVELAKEVPAVGVDTAEDLEKVRAIL 251

>pdb|3DUV|A Chain A, Crystal Structure Of 3-Deoxy-Manno-Octulosonate Cytidylyltransferase From Haemophilus Influenzae Complexed With The Substrate 3-Deoxy-Manno-Octulosonate In The- Configuration Length = 262

Iteration: 1
 Score =  140 bits (354), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 84/207 (40%), Positives = 120/207 (57%), Gaps = 10/207 (4%)
Query: 13  LVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLE-KKYDIVVNIQGDEPLI 71
           +++ATD+E +A+  + FGA+V  TS +  +GTER  E ++KL     +I+VNIQGDEPLI
Sbjct: 45  VIIATDNENVADVAKSFGAEVCXTSVNHNSGTERLAEVVEKLAIPDNEIIVNIQGDEPLI 104
Query: 72  EPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNK 131
            P I+  V   L        S AV     E+ F+PN VK + D  GY +YFSR +IPY++
Sbjct: 105 PPVIVRQVADNLAKFNVNXASLAVKIHDAEELFNPNAVKVLTDKDGYVLYFSRSVIPYDR 164
Query: 132 S--------GKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYK 183
                     KV     YL H+GI +Y + F+K Y    PT L+  E LEQL+VL NG +
Sbjct: 165 DQFXNLQDVQKVQLSDAYLRHIGIYAYRAGFIKQYVQWAPTQLENLEKLEQLRVLYNGER 224
Query: 184 MKV-IKVDHEAHGVDAPEDVEKIESFM 209
           + V +  +  A GVD  ED+EK+ + +
Sbjct: 225 IHVELAKEVPAVGVDTAEDLEKVRAIL 251

>pdb|1VH3|A Chain A, Crystal Structure Of Cmp-kdo Synthetase Length = 262

Iteration: 1
 Score =  140 bits (354), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 84/207 (40%), Positives = 120/207 (57%), Gaps = 10/207 (4%)
Query: 13  LVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLE-KKYDIVVNIQGDEPLI 71
           +++ATD+E +A+  + FGA+V  TS +  +GTER  E ++KL     +I+VNIQGDEPLI
Sbjct: 45  VIIATDNENVADVAKSFGAEVCXTSVNHNSGTERLAEVVEKLAIPDNEIIVNIQGDEPLI 104
Query: 72  EPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNK 131
            P I+  V   L        S AV     E+ F+PN VK + D  GY +YFSR +IPY++
Sbjct: 105 PPVIVRQVADNLAKFNVNXASLAVKIHDAEELFNPNAVKVLTDKDGYVLYFSRSVIPYDR 164
Query: 132 S--------GKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYK 183
                     KV     YL H+GI +Y + F+K Y    PT L+  E LEQL+VL NG +
Sbjct: 165 DQFXNLQDVQKVQLSDAYLRHIGIYAYRAGFIKQYVQWAPTQLENLEKLEQLRVLYNGER 224
Query: 184 MKV-IKVDHEAHGVDAPEDVEKIESFM 209
           + V +  +  A GVD  ED+EK+ + +
Sbjct: 225 IHVELAKEVPAVGVDTAEDLEKVRAIL 251

>pdb|3K8D|A Chain A, Crystal Structure Of E. Coli Lipopolysaccharide Specific Cmp-Kdo Synthetase In Complex With Ctp And 2-Deoxy-Kdo Length = 264

Iteration: 1
 Score =  137 bits (346), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 80/204 (39%), Positives = 116/204 (56%), Gaps = 6/204 (2%)
Query: 13  LVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLI 71
           ++VATD E +A   +  G +V MT    ++GTER  E ++K     D ++VN+QGDEP+I
Sbjct: 61  IIVATDHEDVARAVEAAGGEVCMTRADHQSGTERLAEVVEKCAFSDDTVIVNVQGDEPMI 120
Query: 72  EPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNK 131
              II  V   L      + + AV     E+AF+PN VK V+D  GYA+YFSR  IP+++
Sbjct: 121 PATIIRQVADNLAQRQVGMATLAVPIHNAEEAFNPNAVKVVLDAEGYALYFSRATIPWDR 180
Query: 132 ----SGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKV- 186
                G       +L HLGI  Y + F++ Y    P+PL+  E LEQL+VL  G K+ V 
Sbjct: 181 DRFAEGLETVGDNFLRHLGIYGYRAGFIRRYVNWQPSPLEHIEMLEQLRVLWYGEKIHVA 240
Query: 187 IKVDHEAHGVDAPEDVEKIESFMR 210
           +  +    GVD PED+E++ + MR
Sbjct: 241 VAQEVPGTGVDTPEDLERVRAEMR 264

>pdb|1VH1|A Chain A, Crystal Structure Of Cmp-Kdo Synthetase Length = 256

Iteration: 1
 Score =  130 bits (328), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 78/204 (38%), Positives = 112/204 (54%), Gaps = 6/204 (2%)
Query: 13  LVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLI 71
           ++VATD E +A   +  G +V  T    ++GTER  E ++K     D ++VN+QGDEP I
Sbjct: 45  IIVATDHEDVARAVEAAGGEVCXTRADHQSGTERLAEVVEKCAFSDDTVIVNVQGDEPXI 104
Query: 72  EPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNK 131
              II  V   L        + AV     E+AF+PN VK V+D  GYA+YFSR  IP+++
Sbjct: 105 PATIIRQVADNLAQRQVGXATLAVPIHNAEEAFNPNAVKVVLDAEGYALYFSRATIPWDR 164
Query: 132 ----SGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKV- 186
                G       +L HLGI  Y + F++ Y    P+PL+  E LEQL+VL  G K+ V 
Sbjct: 165 DRFAEGLETVGDNFLRHLGIYGYRAGFIRRYVNWQPSPLEHIEXLEQLRVLWYGEKIHVA 224
Query: 187 IKVDHEAHGVDAPEDVEKIESFMR 210
           +  +    GVD PED+E++ +  R
Sbjct: 225 VAQEVPGTGVDTPEDLERVRAEXR 248

>pdb|1H6J|A Chain A, The Three-Dimensional Structure Of Capsule-Specific Cmp:2-Keto-3-Deoxy-Manno-Octonic Acid Synthetase From Escherichia Coli Length = 245

Iteration: 1
 Score =  122 bits (307), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 66/195 (33%), Positives = 110/195 (56%), Gaps = 5/195 (2%)
Query: 15  VATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPE 74
           VATDD ++ +  Q FG   IMT     +GT+R  E + K+E   DI +N+QGDEP+I P 
Sbjct: 48  VATDDPRVEQAVQAFGGKAIMTRNDHESGTDRLVEVMHKVEA--DIYINLQGDEPMIRPR 105
Query: 75  IIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGK 134
            ++ +++ ++  P    +T   ++   +A +P+ VK VV+    A+YFSR  IPY ++ +
Sbjct: 106 DVETLLQGMRDDPALPVATLCHAISAAEAAEPSTVKVVVNTRQDALYFSRSPIPYPRNAE 165
Query: 135 VNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAH 194
              +  YL H+GI +Y  + L+ Y  L  +  +  E LEQL+++  G  ++  +V     
Sbjct: 166 ---KARYLKHVGIYAYRRDVLQNYSQLPESMPEQAESLEQLRLMNAGINIRTFEVAATGP 222
Query: 195 GVDAPEDVEKIESFM 209
           GVD P  +EK+ + M
Sbjct: 223 GVDTPACLEKVRALM 237

>pdb|4FCU|A Chain A, 1.9 Angstrom Crystal Structure Of 3-Deoxy-Manno-Octulosonate Cytidylyltransferase (Kdsb) From Acinetobacter Baumannii Without His- Tag Bound To The Active Site Length = 253

Iteration: 1
 Score =  117 bits (293), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 78/212 (36%), Positives = 115/212 (54%), Gaps = 14/212 (6%)
Query: 10  FCGLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQ-KLEKKYDIVVNIQGDE 68
           F  L VATDDE+IAE C+  G DV++TS    +GT+R +E  + K     DI+VN+QGDE
Sbjct: 42  FDDLCVATDDERIAEICRAEGVDVVLTSADHPSGTDRLSEVARIKGWDADDIIVNVQGDE 101
Query: 69  PLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNR-VKCVVDNHGYAIYFSRGLI 127
           PL+  +++  V K L   P+   ST    +   D F  +  VK V+     A+YFSR  I
Sbjct: 102 PLLPAQLVQQVAKLLVDKPNCSMSTLCEPIHALDEFQRDSIVKVVMSKQNEALYFSRATI 161
Query: 128 PYNKSGKVNPQFPYL-----LHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGY 182
           PY++ G    + P L      HLG+ +Y  + L+ Y       L+  E LEQL+VLENG+
Sbjct: 162 PYDRDGAKRDE-PTLHTQAFRHLGLYAYRVSLLQEYVTWEMGKLEKLESLEQLRVLENGH 220
Query: 183 KMKVIKVDHE-AHGVDAPEDVEK-----IESF 208
           ++ +   +     GVD   D+++     +ESF
Sbjct: 221 RIAIAVAEANLPPGVDTQADLDRLNNMPVESF 252

>pdb|3POL|A Chain A, 2.3 Angstrom Crystal Structure Of 3-deoxy-manno-octulosonate Cytidylyltransferase (kdsb) From Acinetobacter Baumannii Length = 276

Iteration: 1
 Score =  117 bits (293), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 80/214 (37%), Positives = 117/214 (54%), Gaps = 18/214 (8%)
Query: 10  FCGLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQ-KLEKKYDIVVNIQGDE 68
           F  L VATDDE+IAE C+  G DV++TS    +GT+R +E  + K     DI+VN+QGDE
Sbjct: 65  FDDLCVATDDERIAEICRAEGVDVVLTSADHPSGTDRLSEVARIKGWDADDIIVNVQGDE 124
Query: 69  PLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNR-VKCVVDNHGYAIYFSRGLI 127
           PL+  +++  V K L   P+   ST    +   D F  +  VK V+     A+YFSR  I
Sbjct: 125 PLLPAQLVQQVAKLLVDKPNCSMSTLCEPIHALDEFQRDSIVKVVMSKQNEALYFSRATI 184
Query: 128 PYNKSGKVNPQFPYL-----LHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGY 182
           PY++ G    + P L      HLG+ +Y  + L+ Y       L+  E LEQL+VLENG+
Sbjct: 185 PYDRDGAKRDE-PTLHTQAFRHLGLYAYRVSLLQEYVTWEMGKLEKLESLEQLRVLENGH 243
Query: 183 KMKVIKVDHEAH---GVDAPEDVEK-----IESF 208
           ++ +     EA+   GVD   D+++     +ESF
Sbjct: 244 RIAIAVA--EANLPPGVDTQADLDRLNNMPVESF 275

>pdb|3JTJ|A Chain A, 3-Deoxy-Manno-Octulosonate Cytidylyltransferase From Yersinia Pestis Length = 253

Iteration: 1
 Score =  115 bits (289), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 66/177 (37%), Positives = 97/177 (54%), Gaps = 5/177 (2%)
Query: 13  LVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLE-KKYDIVVNIQGDEPLI 71
           ++VATD   + +  +  G +V +T    ++GTER  E ++       DI+VN+QGDEPL+
Sbjct: 48  VIVATDHPDVVKAVEAAGGEVCLTRADHQSGTERLAEVIEHYGFADDDIIVNVQGDEPLV 107
Query: 72  EPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNK 131
            P II  V   L A      + AV     E+AF+PN VK V D  GYA+YFSR  IP+ +
Sbjct: 108 PPVIIRQVADNLAACSAGXATLAVPIASSEEAFNPNAVKVVXDAQGYALYFSRATIPWER 167
Query: 132 SGKVNPQFP----YLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKM 184
                 +      +L H+GI +Y + F++ Y    P+ L+  E LEQL+VL  G K+
Sbjct: 168 ERFAQSKETIGDCFLRHIGIYAYRAGFIRRYVNWAPSQLEQIELLEQLRVLWYGEKI 224

>pdb|2Y6P|A Chain A, Evidence For A Two-Metal-Ion-Mechanism In The Kdo-Cytidylyltransferase Kdsb Length = 234

Iteration: 1
 Score =  107 bits (268), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 66/199 (33%), Positives = 112/199 (56%), Gaps = 11/199 (5%)
Query: 13  LVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIE 72
           +++ATD E++ E  +    +V +T     +G++R    ++ L+   D+++N QGDEP + 
Sbjct: 44  VILATDSERVKEVVEDL-CEVFLTPSDLPSGSDRVLYVVRDLD--VDLIINYQGDEPFVY 100
Query: 73  PEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFD-PNRVKCVVDNHGYAIYFSRGLIPYNK 131
            E I  + + L+     V      + K ++A++ P  VK V+D  GYA+YFSR  IPY +
Sbjct: 101 EEDIKLIFRELEKGERVV----TLARKDKEAYERPEDVKVVLDREGYALYFSRSPIPYFR 156
Query: 132 SGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDH 191
               N  F  L H+GI  +    L  +  + P+ L+  E LEQL++LENG K+KV+  ++
Sbjct: 157 K---NDTFYPLKHVGIYGFRKETLMEFGAMPPSKLEQIEGLEQLRLLENGIKIKVLITEN 213
Query: 192 EAHGVDAPEDVEKIESFMR 210
             HGVD  ED++ +E  ++
Sbjct: 214 YYHGVDTEEDLKIVEEKLK 232

>pdb|3TQD|A Chain A, Structure Of The 3-Deoxy-D-Manno-Octulosonate Cytidylyltransferase (Kdsb) From Coxiella Burnetii Length = 256

Iteration: 1
 Score =  107 bits (268), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 70/205 (34%), Positives = 112/205 (54%), Gaps = 8/205 (3%)
Query: 13  LVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLI 71
           +V+ATDD++I +  + FGA V  TS   ++GTER  EA   L  + D I+V +QGDEPLI
Sbjct: 52  VVIATDDKRIRQVAEDFGAVVCXTSSDHQSGTERIAEAAVALGFEDDEIIVCLQGDEPLI 111
Query: 72  EPEIIDGVVKALQAAPDAVFSTAVTSLKPEDA-FDPNRVKCVVDNHGYAIYFSRGLIPYN 130
            P+ I  + + L    +   ++  T +   D  F+P+  K V++   YA+YFS   IP+ 
Sbjct: 112 PPDAIRKLAEDLDEHDNVKVASLCTPITEVDELFNPHSTKVVLNRRNYALYFSHAPIPWG 171
Query: 131 K---SGKVNPQF--PYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMK 185
           +   S K N Q    +  H+GI +Y   FL+ Y      P +  E LEQL++L +G ++ 
Sbjct: 172 RDTFSDKENLQLNGSHYRHVGIYAYRVGFLEEYLSWDACPAEKXEALEQLRILWHGGRIH 231
Query: 186 VIKVDHEA-HGVDAPEDVEKIESFM 209
            +    +   GVD  ED+E++ ++ 
Sbjct: 232 XVVAKSKCPPGVDTEEDLERVRAYF 256

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	215
1h7e_A	245	3-deoxy-manno-octulosonate cytidylyltransferase; n	1e-99
4fcu_A	253	3-deoxy-manno-octulosonate cytidylyltransferase; s	2e-94
3tqd_A	256	3-deoxy-manno-octulosonate cytidylyltransferase; c	5e-93
3oam_A	252	3-deoxy-manno-octulosonate cytidylyltransferase; c	1e-92
1vic_A	262	3-deoxy-manno-octulosonate cytidylyltransferase; s	6e-90
3k8d_A	264	3-deoxy-manno-octulosonate cytidylyltransferase; K	1e-89
2y6p_A	234	3-deoxy-manno-octulosonate cytidylyltransferase; l	1e-87
1ezi_A	228	CMP-N-acetylneuraminic acid synthetase; homodimer,	1e-12
1qwj_A	229	Cytidine monophospho-N-acetylneuraminic acid synth	4e-10
2dpw_A	232	Hypothetical protein TTHA0179; transferase, struct	2e-05

>1h7e_A 3-deoxy-manno-octulosonate cytidylyltransferase; nucleotidyltransferase, CMP-KDO synthetase, nucleoside monophosphate glycosides; 1.83A {Escherichia coli} SCOP: c.68.1.13 PDB: 1gqc_A* 1gq9_A 1h6j_A 1h7f_A* 1h7g_A* 1h7h_A* 1h7t_A* Length = 245

 Score =  288 bits (739), Expect = 1e-99
 Identities = 66/202 (32%), Positives = 111/202 (54%), Gaps = 5/202 (2%)

Query: 14  VVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEP 73
            VATDD ++ +  Q FG   IMT     +GT+R  E + K+E   DI +N+QGDEP+I P
Sbjct: 47  WVATDDPRVEQAVQAFGGKAIMTRNDHESGTDRLVEVMHKVE--ADIYINLQGDEPMIRP 104

Query: 74  EIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSG 133
             ++ +++ ++  P    +T   ++   +A +P+ VK VV+    A+YFSR  IPY ++ 
Sbjct: 105 RDVETLLQGMRDDPALPVATLCHAISAAEAAEPSTVKVVVNTRQDALYFSRSPIPYPRNA 164

Query: 134 KVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEA 193
           +   +  YL H+GI +Y  + L+ Y  L  +  +  E LEQL+++  G  ++  +V    
Sbjct: 165 E---KARYLKHVGIYAYRRDVLQNYSQLPESMPEQAESLEQLRLMNAGINIRTFEVAATG 221

Query: 194 HGVDAPEDVEKIESFMRERNLS 215
            GVD P  +EK+ + M +    
Sbjct: 222 PGVDTPACLEKVRALMAQELAE 243

>4fcu_A 3-deoxy-manno-octulosonate cytidylyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.90A {Acinetobacter baumannii} PDB: 3pol_A Length = 253

 Score =  275 bits (706), Expect = 2e-94
 Identities = 69/206 (33%), Positives = 109/206 (52%), Gaps = 7/206 (3%)

Query: 14  VVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLE-KKYDIVVNIQGDEPLIE 72
            VATDDE+IAE C+  G DV++TS    +GT+R +E  +       DI+VN+QGDEPL+ 
Sbjct: 46  CVATDDERIAEICRAEGVDVVLTSADHPSGTDRLSEVARIKGWDADDIIVNVQGDEPLLP 105

Query: 73  PEIIDGVVKALQAAPDAVFSTAVTSLK-PEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNK 131
            +++  V K L   P+   ST    +   ++    + VK V+     A+YFSR  IPY++
Sbjct: 106 AQLVQQVAKLLVDKPNCSMSTLCEPIHALDEFQRDSIVKVVMSKQNEALYFSRATIPYDR 165

Query: 132 SG----KVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVI 187
            G    +         HLG+ +Y  + L+ Y       L+  E LEQL+VLENG+++ + 
Sbjct: 166 DGAKRDEPTLHTQAFRHLGLYAYRVSLLQEYVTWEMGKLEKLESLEQLRVLENGHRIAIA 225

Query: 188 KVDHE-AHGVDAPEDVEKIESFMRER 212
             +     GVD   D++++ +   E 
Sbjct: 226 VAEANLPPGVDTQADLDRLNNMPVES 251

>3tqd_A 3-deoxy-manno-octulosonate cytidylyltransferase; cell envelope; 1.80A {Coxiella burnetii} Length = 256

 Score =  271 bits (696), Expect = 5e-93
 Identities = 65/203 (32%), Positives = 111/203 (54%), Gaps = 8/203 (3%)

Query: 14  VVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLE-KKYDIVVNIQGDEPLIE 72
           V+ATDD++I +  + FGA V MTS   ++GTER  EA   L  +  +I+V +QGDEPLI 
Sbjct: 53  VIATDDKRIRQVAEDFGAVVCMTSSDHQSGTERIAEAAVALGFEDDEIIVCLQGDEPLIP 112

Query: 73  PEIIDGVVKALQAAPDAVFSTAVTSLK-PEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNK 131
           P+ I  + + L    +   ++  T +   ++ F+P+  K V++   YA+YFS   IP+ +
Sbjct: 113 PDAIRKLAEDLDEHDNVKVASLCTPITEVDELFNPHSTKVVLNRRNYALYFSHAPIPWGR 172

Query: 132 SG-----KVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKV 186
                   +     +  H+GI +Y   FL+ Y      P +  E LEQL++L +G ++ +
Sbjct: 173 DTFSDKENLQLNGSHYRHVGIYAYRVGFLEEYLSWDACPAEKMEALEQLRILWHGGRIHM 232

Query: 187 IKVDHEA-HGVDAPEDVEKIESF 208
           +    +   GVD  ED+E++ ++
Sbjct: 233 VVAKSKCPPGVDTEEDLERVRAY 255

>3oam_A 3-deoxy-manno-octulosonate cytidylyltransferase; center for structural genomics of infectious diseases; 1.75A {Vibrio cholerae o1 biovar el tor} Length = 252

 Score =  270 bits (694), Expect = 1e-92
 Identities = 82/206 (39%), Positives = 118/206 (57%), Gaps = 8/206 (3%)

Query: 14  VVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKK-YDIVVNIQGDEPLIE 72
           ++ATDDE++ +  Q FG  V MTS + ++GTER  E + K+      IVVN+QGDEPLI 
Sbjct: 46  IIATDDERVEQAVQAFGGVVCMTSPNHQSGTERLAEVVAKMAIPADHIVVNVQGDEPLIP 105

Query: 73  PEIIDGVVKALQAAPDAVFSTAVTSLK-PEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNK 131
           P II  V   L AA  A  +T    ++   + F+PN VK + D  GYA+YFSR  IP+++
Sbjct: 106 PAIIRQVADNL-AACSAPMATLAVEIEDEAEVFNPNAVKVITDKSGYALYFSRATIPWDR 164

Query: 132 SGKVNPQF----PYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKV- 186
                       P L H+GI +Y + F+  Y    P+ L+  E LEQL+VL +G K+ V 
Sbjct: 165 DNFAKADKAIVQPLLRHIGIYAYRAGFINTYLDWQPSQLEKIECLEQLRVLWHGEKIHVA 224

Query: 187 IKVDHEAHGVDAPEDVEKIESFMRER 212
           + ++    GVD PED+E +   + ER
Sbjct: 225 VALEAPPAGVDTPEDLEVVRRIVAER 250

>1vic_A 3-deoxy-manno-octulosonate cytidylyltransferase; structural genomics; 1.80A {Haemophilus influenzae} SCOP: c.68.1.13 PDB: 1vh3_A 3duv_A* Length = 262

 Score =  264 bits (676), Expect = 6e-90
 Identities = 83/211 (39%), Positives = 122/211 (57%), Gaps = 12/211 (5%)

Query: 14  VVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLE-KKYDIVVNIQGDEPLIE 72
           ++ATD+E +A+  + FGA+V MTS +  +GTER  E ++KL     +I+VNIQGDEPLI 
Sbjct: 46  IIATDNENVADVAKSFGAEVCMTSVNHNSGTERLAEVVEKLAIPDNEIIVNIQGDEPLIP 105

Query: 73  PEIIDGVVKALQAAPDAVFSTAVTSLK-PEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNK 131
           P I+  V   L A  +   ++    +   E+ F+PN VK + D  GY +YFSR +IPY++
Sbjct: 106 PVIVRQVADNL-AKFNVNMASLAVKIHDAEELFNPNAVKVLTDKDGYVLYFSRSVIPYDR 164

Query: 132 SG--------KVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYK 183
                     KV     YL H+GI +Y + F+K Y    PT L+  E LEQL+VL NG +
Sbjct: 165 DQFMNLQDVQKVQLSDAYLRHIGIYAYRAGFIKQYVQWAPTQLENLEKLEQLRVLYNGER 224

Query: 184 MKV-IKVDHEAHGVDAPEDVEKIESFMRERN 213
           + V +  +  A GVD  ED+EK+ + +    
Sbjct: 225 IHVELAKEVPAVGVDTAEDLEKVRAILAANG 255

>3k8d_A 3-deoxy-manno-octulosonate cytidylyltransferase; KDSB synthetase KDO complex, cytoplasm, lipopolysaccharide biosynthesis, magnesium; HET: KDO CTP; 1.90A {Escherichia coli} PDB: 3k8e_C 1vh1_A 3jtj_A* Length = 264

 Score =  263 bits (674), Expect = 1e-89
 Identities = 79/204 (38%), Positives = 112/204 (54%), Gaps = 8/204 (3%)

Query: 14  VVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLE-KKYDIVVNIQGDEPLIE 72
           +VATD E +A   +  G +V MT    ++GTER  E ++K       ++VN+QGDEP+I 
Sbjct: 62  IVATDHEDVARAVEAAGGEVCMTRADHQSGTERLAEVVEKCAFSDDTVIVNVQGDEPMIP 121

Query: 73  PEIIDGVVKALQAAPDAVFSTAVTSLK-PEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNK 131
             II  V   L A      +T    +   E+AF+PN VK V+D  GYA+YFSR  IP+++
Sbjct: 122 ATIIRQVADNL-AQRQVGMATLAVPIHNAEEAFNPNAVKVVLDAEGYALYFSRATIPWDR 180

Query: 132 ----SGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVI 187
                G       +L HLGI  Y + F++ Y    P+PL+  E LEQL+VL  G K+ V 
Sbjct: 181 DRFAEGLETVGDNFLRHLGIYGYRAGFIRRYVNWQPSPLEHIEMLEQLRVLWYGEKIHVA 240

Query: 188 KVD-HEAHGVDAPEDVEKIESFMR 210
                   GVD PED+E++ + MR
Sbjct: 241 VAQEVPGTGVDTPEDLERVRAEMR 264

>2y6p_A 3-deoxy-manno-octulosonate cytidylyltransferase; lipid A; HET: CTP; 2.10A {Aquifex aeolicus} Length = 234

 Score =  257 bits (659), Expect = 1e-87
 Identities = 66/198 (33%), Positives = 106/198 (53%), Gaps = 9/198 (4%)

Query: 14  VVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEP 73
           ++ATD E++ E  +    +V +T     +G++R    ++ L+   D+++N QGDEP +  
Sbjct: 45  ILATDSERVKEVVEDLC-EVFLTPSDLPSGSDRVLYVVRDLD--VDLIINYQGDEPFVYE 101

Query: 74  EIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSG 133
           E I  + + L+        T     K E    P  VK V+D  GYA+YFSR  IPY +  
Sbjct: 102 EDIKLIFRELEKGERV--VTLARKDK-EAYERPEDVKVVLDREGYALYFSRSPIPYFRK- 157

Query: 134 KVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEA 193
             N  F  L H+GI  +    L  +  + P+ L+  E LEQL++LENG K+KV+  ++  
Sbjct: 158 --NDTFYPLKHVGIYGFRKETLMEFGAMPPSKLEQIEGLEQLRLLENGIKIKVLITENYY 215

Query: 194 HGVDAPEDVEKIESFMRE 211
           HGVD  ED++ +E  ++ 
Sbjct: 216 HGVDTEEDLKIVEEKLKN 233

>1ezi_A CMP-N-acetylneuraminic acid synthetase; homodimer, alpha-beta-alpha, transferase; 2.00A {Neisseria meningitidis} SCOP: c.68.1.13 PDB: 1eyr_A Length = 228

 Score = 63.4 bits (155), Expect = 1e-12
 Identities = 23/105 (21%), Positives = 35/105 (33%), Gaps = 17/105 (16%)

Query: 7   SFLFCGLVVATDDEKIAECCQQFGADVIM----------TSESCRNGTERCNEALQKLEK 56
           S  F  ++V+TD   IAE  + FG +V++          +S S          AL+ +  
Sbjct: 42  SKCFDRIIVSTDGGLIAEEAKNFGVEVVLRPAELASDTASSISG------VIHALETIGS 95

Query: 57  KYDIVVNIQGDEPLIEPEIIDGVVKALQAAP-DAVFSTAVTSLKP 100
               V  +Q   PL     I             +V S       P
Sbjct: 96  NSGTVTLLQPTSPLRTGAHIREAFSLFDEKIKGSVVSACPMEHHP 140

>1qwj_A Cytidine monophospho-N-acetylneuraminic acid synthetase; CMP-5-N-acetylneuraminic acid synthetase, CMP-NEU5AC, sialic acid, glycosylation; HET: NCC; 2.80A {Mus musculus} SCOP: c.68.1.13 Length = 229

 Score = 56.5 bits (137), Expect = 4e-10
 Identities = 27/97 (27%), Positives = 41/97 (42%), Gaps = 18/97 (18%)

Query: 7   SFLFCGLVVATDDEKIAECCQQFGADVIM----------TSESCRNGTERCNEALQKLEK 56
           + +F  + V+TD ++I    +QFGA V            TS           E L     
Sbjct: 41  AGVFQSVWVSTDHDEIENVAKQFGAQVHRRSSETSKDSSTSLDA------IVEFLNYHN- 93

Query: 57  KYDIVVNIQGDEPLIEPEIIDGVVKALQAA-PDAVFS 92
           + DIV NIQ   P + P  +  V + ++    D+VFS
Sbjct: 94  EVDIVGNIQATSPCLHPTDLQKVAEMIREEGYDSVFS 130

>2dpw_A Hypothetical protein TTHA0179; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 2.90A {Thermus thermophilus} SCOP: c.68.1.19 Length = 232

 Score = 42.9 bits (101), Expect = 2e-05
 Identities = 22/160 (13%), Positives = 47/160 (29%), Gaps = 20/160 (12%)

Query: 54  LEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVV 113
           LE     V+   GD P +  E +  V+     A          +++            + 
Sbjct: 80  LEHVEGRVLVATGDIPHLTEEAVRFVLDKAPEAALVYPIVPKEAVEARFPRTKRTYARLR 139

Query: 114 DNH--GYAIYFSRG-----LIPYNKSGKVNPQFPYLL--HLGIQSYDSNFLKIYPGLHPT 164
           +    G  +           +P  +      + P  L   +G        L        +
Sbjct: 140 EGTFTGGNLLLLDKSLFRKALPLARRVVALRKRPLALARLVGWD-----VLLKLLLGRLS 194

Query: 165 PLQLEEDLEQLKVLENGYKMKVIKVDHEAHG--VDAPEDV 202
             ++E   +++     G + + +   +   G  VD  ED+
Sbjct: 195 LAEVEARAQRIL----GVEARALVTPYPEVGVDVDREEDL 230

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	215
4fcu_A	253	3-deoxy-manno-octulosonate cytidylyltransferase; s	99.97
3tqd_A	256	3-deoxy-manno-octulosonate cytidylyltransferase; c	99.97
3k8d_A	264	3-deoxy-manno-octulosonate cytidylyltransferase; K	99.96
3oam_A	252	3-deoxy-manno-octulosonate cytidylyltransferase; c	99.95
1vic_A	262	3-deoxy-manno-octulosonate cytidylyltransferase; s	99.88
1h7e_A	245	3-deoxy-manno-octulosonate cytidylyltransferase; n	99.87
2y6p_A	234	3-deoxy-manno-octulosonate cytidylyltransferase; l	99.81
3q80_A	231	2-C-methyl-D-erythritol 4-phosphate cytidyltransf;	99.78
1qwj_A	229	Cytidine monophospho-N-acetylneuraminic acid synth	99.74
1ezi_A	228	CMP-N-acetylneuraminic acid synthetase; homodimer,	99.73
3f1c_A	246	Putative 2-C-methyl-D-erythritol 4-phosphate cytid	99.64
2yc3_A	228	2-C-methyl-D-erythritol 4-phosphate cytidylyltran	99.46
1vpa_A	234	2-C-methyl-D-erythritol 4-phosphate cytidylyltran;	99.42
2xwl_A	223	2-C-methyl-D-erythritol 4-phosphate cytidylyltran;	99.41
4fce_A	459	Bifunctional protein GLMU; GLMU. csgid, niaid, str	99.4
1vgw_A	231	4-diphosphocytidyl-2C-methyl-D-erythritol synthas;	99.39
2vsh_A	236	TARI, 2-C-methyl-D-erythritol 4-phosphate cytidyly	99.32
1hm9_A	468	GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltr	99.31
2waw_A	199	MOBA relate protein; unknown function; HET: PGE; 1	99.28
1i52_A	236	4-diphosphocytidyl-2-C-methylerythritol synthase;	99.26
2px7_A	236	2-C-methyl-D-erythritol 4-phosphate cytidylyltrans	99.23
2v0h_A	456	Bifunctional protein GLMU; cell WALL, magnesium, c	99.22
3rsb_A	196	Adenosylcobinamide-phosphate guanylyltransferase;	99.2
4ecm_A	269	Glucose-1-phosphate thymidylyltransferase; HET: DA	99.17
2wee_A	197	MOBA-related protein; unknown function; 1.65A {Myc	99.08
1fxo_A	293	Glucose-1-phosphate thymidylyltransferase; rhamnos	99.03
1w55_A	371	ISPD/ISPF bifunctional enzyme; biosynthetic pathwa	99.02
1lvw_A	295	Glucose-1-phosphate thymidylyltransferase; protein	99.02
3juk_A	281	UDP-glucose pyrophosphorylase (GALU); transfer; HE	99.0
2pa4_A	323	UTP-glucose-1-phosphate uridylyltransferase; phosp	98.99
3ngw_A	208	Molybdopterin-guanine dinucleotide biosynthesis P	98.89
2ggo_A	401	401AA long hypothetical glucose-1-phosphate thymid	98.86
1mc3_A	296	Glucose-1-phosphate thymidylyltransferase; glucose	98.85
3d5n_A	197	Q97W15_sulso; NESG, SSR125, structural genomics, P	98.83
2e3d_A	302	UTP--glucose-1-phosphate uridylyltransferase; UDP-	98.8
2qh5_A	308	PMI, ALGA, mannose-6-phosphate isomerase; structur	98.71
2ux8_A	297	Glucose-1-phosphate uridylyltransferase; UGPG, GAL	98.69
1jyk_A	254	LICC protein, CTP:phosphocholine cytidylytransfera	98.6
3brk_X	420	Glucose-1-phosphate adenylyltransferase; ADP-gluco	98.45
1tzf_A	259	Glucose-1-phosphate cytidylyltransferase; nucleoti	98.4
3st8_A	501	Bifunctional protein GLMU; acetyltransferase, pyro	98.37
3pnn_A	303	Conserved domain protein; structural genomics, PSI	98.37
2i5e_A	211	Hypothetical protein MM_2497; APC86122, methanosar	98.34
2dpw_A	232	Hypothetical protein TTHA0179; transferase, struct	98.29
2x65_A	336	Mannose-1-phosphate guanylyltransferase; nucleotid	98.09
1e5k_A	201	Molybdopterin-guanine dinucleotide biosynthesis pr	98.0
2cu2_A	337	Putative mannose-1-phosphate guanylyl transferase;	97.99
2xme_A	232	CTP-inositol-1-phosphate cytidylyltransferase; CDP	97.96
1yp2_A	451	Glucose-1-phosphate adenylyltransferase small subu	97.96
4evw_A	255	Nucleoside-diphosphate-sugar pyrophosphorylase; st	97.77
2e8b_A	201	Probable molybdopterin-guanine dinucleotide biosy	97.67
3cgx_A	242	Putative nucleotide-diphospho-sugar transferase; Y	97.27
4hg6_A	802	Cellulose synthase subunit A; membrane translocati	92.1
3ckj_A	329	Putative uncharacterized protein; mycobacteria, un	90.47
2bo4_A	397	Mannosylglycerate synthase; catalysis, glycosyltra	90.26
1qg8_A	255	Protein (spore coat polysaccharide biosynthesis P	90.19
3f1y_A	387	Mannosyl-3-phosphoglycerate synthase; GT-A type gl	87.63
3bcv_A	240	Putative glycosyltransferase protein; protein stru	85.67

>4fcu_A 3-deoxy-manno-octulosonate cytidylyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.90A {Acinetobacter baumannii} PDB: 3pol_A

Probab=99.97  E-value=5.7e-31  Score=212.38  Aligned_cols=208  Identities=34%  Similarity=0.535  Sum_probs=169.4

Q ss_pred             ccccCCCCcEEEEcCcHHHHHHHHHcCCeEEeCCCCCCCchHHHHHHHHHhcC-CCCEEEEecCCCCCCCHHHHHHHHHH
Q 027992            4 MCHSFLFCGLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEK-KYDIVVNIQGDEPLIEPEIIDGVVKA   82 (215)
Q Consensus         4 a~~~~~~d~ivV~td~~~i~~~~~~~g~~v~~~~~~~~~~~~~i~~~l~~~~~-~~d~v~~~~~d~Pli~~~~i~~~i~~   82 (215)
                      ++++ .+++|+|+|++++|.++++++|++++....+..+|++++.+|+..+.. +.|.+++++||+||+++++|+++++.
T Consensus        37 ~~~~-~~~~vvVvt~~~~i~~~~~~~g~~v~~~~~~~~~Gt~~i~~a~~~~~~~~~d~vlv~~gD~Pli~~~~i~~li~~  115 (253)
T 4fcu_A           37 KKVE-GFDDLCVATDDERIAEICRAEGVDVVLTSADHPSGTDRLSEVARIKGWDADDIIVNVQGDEPLLPAQLVQQVAKL  115 (253)
T ss_dssp             HTCT-TCCEEEEEESCHHHHHHHHTTTCCEEECCTTCCCHHHHHHHHHHHHTCCTTCEEEECCTTCTTCCHHHHHHHHHH
T ss_pred             HHhc-CCCEEEEECCHHHHHHHHHHcCCeEEEeCCCCCChHHHHHHHHHhcCcCCCCEEEEEeCCcccCCHHHHHHHHHH
Confidence            3444 499999999999999999999999876555566788899999988752 56999999999999999999999999


Q ss_pred             HHcCCCceEEeecccCCC-CccCCCCceEEEEcCCCceecccCCCCCCCCCCCC-CCCC---CeeEEeeeeeechHHHhh
Q 027992           83 LQAAPDAVFSTAVTSLKP-EDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKV-NPQF---PYLLHLGIQSYDSNFLKI  157 (215)
Q Consensus        83 ~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~ip~~~~~~~-~q~~---p~~~~~~~~~~~~~~l~~  157 (215)
                      +.++++..+++++++.+. ++..+|+.+|++.+++|.+++|+++++|+.|+... .|++   ++..|.+.|+|+.++|..
T Consensus       116 ~~~~~~~~~at~~~~~~~~~~~~~p~~~kvv~d~~g~~l~fsr~~ip~~r~~~~~~~~~~~~~~~~~~GiY~f~~~~l~~  195 (253)
T 4fcu_A          116 LVDKPNCSMSTLCEPIHALDEFQRDSIVKVVMSKQNEALYFSRATIPYDRDGAKRDEPTLHTQAFRHLGLYAYRVSLLQE  195 (253)
T ss_dssp             HHHCTTCSEEEEEEECCCHHHHHCTTSCEEEECTTSBEEEEESSCCSCCTTTSSSSSCCCCSCCEEEEEEEEEEHHHHHH
T ss_pred             HHhCCCCCEEEEeEEcCCHHHccCCCccEEEECCCCeEEEecCCCCCCCCCcccccccccccceeEEEEEEEeCHHHHHH
Confidence            976544444444455432 23468888999889999999999999988775311 1222   357799999999999999


Q ss_pred             CcCCCCCCCCCccchhhhhhhhcCCeeEEEEecCC-CCCCCCHHHHHHHHHHHHhh
Q 027992          158 YPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHE-AHGVDAPEDVEKIESFMRER  212 (215)
Q Consensus       158 ~~~~~~~~~~~~e~l~~~~~~~~g~~v~~~~~~~~-~idIdt~~Dl~~ae~il~~~  212 (215)
                      +..++++.++..|.++++++++.|++|.+++.+.. +++||||+||+.|+++|++|
T Consensus       196 ~~~~~~~~le~~e~le~lr~l~~G~~I~~~~~~~~~~~~IdtpeDL~~a~~~l~~r  251 (253)
T 4fcu_A          196 YVTWEMGKLEKLESLEQLRVLENGHRIAIAVAEANLPPGVDTQADLDRLNNMPVES  251 (253)
T ss_dssp             HTTSCCCHHHHHHTCTTHHHHHTTCCEEEEECSSCCCCCCCSHHHHHHHHTSCGGG
T ss_pred             HHhCCCCcccchhHHHHHHHHHCCCceEEEEeCCCCCCCCCCHHHHHHHHHHHHhh
Confidence            88888888888888999999999999999998755 99999999999999998765

>3tqd_A 3-deoxy-manno-octulosonate cytidylyltransferase; cell envelope; 1.80A {Coxiella burnetii} SCOP: c.68.1.0

Probab=99.97  E-value=8.4e-30  Score=205.81  Aligned_cols=201  Identities=32%  Similarity=0.545  Sum_probs=165.7

Q ss_pred             CCCcEEEEcCcHHHHHHHHHcCCeEEeCCCCCCCchHHHHHHHHHhc-CCCCEEEEecCCCCCCCHHHHHHHHHHHHcCC
Q 027992            9 LFCGLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAP   87 (215)
Q Consensus         9 ~~d~ivV~td~~~i~~~~~~~g~~v~~~~~~~~~~~~~i~~~l~~~~-~~~d~v~~~~~d~Pli~~~~i~~~i~~~~~~~   87 (215)
                      .+++|+|+|++++|.+.++++|++++....+..+|+++++.++..+. .+.|.+++++||+||+++++|+++++.+.+++
T Consensus        48 ~i~~VvVvt~~~~i~~~~~~~g~~v~~~~~~~~~Gt~~i~~a~~~l~~~~~d~vlv~~gD~Pli~~~~i~~li~~~~~~~  127 (256)
T 3tqd_A           48 GAEEVVIATDDKRIRQVAEDFGAVVCMTSSDHQSGTERIAEAAVALGFEDDEIIVCLQGDEPLIPPDAIRKLAEDLDEHD  127 (256)
T ss_dssp             TCSEEEEEESCHHHHHHHHHTTCEEEECCTTCCSHHHHHHHHHHHTTCCTTCEEEEECTTCCCCCHHHHHHHHHHHHHCC
T ss_pred             CCCEEEEECCHHHHHHHHHHcCCeEEEeCCCCCCcHHHHHHHHHHhCcCCCCEEEEEeCCcccCCHHHHHHHHHHHHhCC
Confidence            48999999999999999999999987666667789999999988874 25699999999999999999999999997644


Q ss_pred             CceEEeecccCC-CCccCCCCceEEEEcCCCceecccCCCCCCCCCCCC-----CCCCCeeEEeeeeeechHHHhhCcCC
Q 027992           88 DAVFSTAVTSLK-PEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKV-----NPQFPYLLHLGIQSYDSNFLKIYPGL  161 (215)
Q Consensus        88 ~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~ip~~~~~~~-----~q~~p~~~~~~~~~~~~~~l~~~~~~  161 (215)
                      ++.+++.+.+++ .++..+|+.+|++.+++|.+++|+++++|+.|+...     ....+++.|.|.|+|+.++|..+..+
T Consensus       128 ~~~~a~l~~~v~~~~~~~~p~~vkvv~d~~g~~l~fsr~pip~~r~~~~~~~~~~~~~~~~~~~GiY~y~~~~l~~~~~l  207 (256)
T 3tqd_A          128 NVKVASLCTPITEVDELFNPHSTKVVLNRRNYALYFSHAPIPWGRDTFSDKENLQLNGSHYRHVGIYAYRVGFLEEYLSW  207 (256)
T ss_dssp             --CEEEEEEECCCHHHHTCTTSCEEEECTTSBEEEEESSCSSCCTTTTTCGGGCCCSSCCEEEEEEEEEEHHHHHHHHHS
T ss_pred             CCCEEEEeeEcCCHHHhhCCCccEEEECCCCEEeEEecCCCCCCCcccccccccccCCcceEEEEEEEcCHHHHHHHHhC
Confidence            555555566664 233468888998888999999999999887664210     01234678999999999999999888


Q ss_pred             CCCCCCCccchhhhhhhhcCCeeEEEEec-CCCCCCCCHHHHHHHHHHH
Q 027992          162 HPTPLQLEEDLEQLKVLENGYKMKVIKVD-HEAHGVDAPEDVEKIESFM  209 (215)
Q Consensus       162 ~~~~~~~~e~l~~~~~~~~g~~v~~~~~~-~~~idIdt~~Dl~~ae~il  209 (215)
                      .++.+|..|.++++|+++.|++|++++.+ ...++||||+||+.|+++|
T Consensus       208 ~~s~lE~~e~leqlr~le~G~~i~~~~~~~~~~~~idtpeDl~~a~~~~  256 (256)
T 3tqd_A          208 DACPAEKMEALEQLRILWHGGRIHMVVAKSKCPPGVDTEEDLERVRAYF  256 (256)
T ss_dssp             CCCHHHHHHTCTTHHHHHTTCCCEEEECSSCCCCCCSSHHHHHHHHTTC
T ss_pred             CCCcccchhhhHHHHHHHCCCeEEEEEeCCCCCCCcCCHHHHHHHHHhC
Confidence            88888888999999999999999999986 4689999999999998753

>3k8d_A 3-deoxy-manno-octulosonate cytidylyltransferase; KDSB synthetase KDO complex, lipopolysaccharide biosynthesis magnesium, nucleotidyltransferase; HET: KDO CTP; 1.90A {Escherichia coli} SCOP: c.68.1.13 PDB: 3k8e_C 1vh1_A 3jtj_A*

Probab=99.96  E-value=2.2e-29  Score=204.20  Aligned_cols=204  Identities=38%  Similarity=0.613  Sum_probs=164.8

Q ss_pred             cccCCCCcEEEEcCcHHHHHHHHHcCCeEEeCCCCCCCchHHHHHHHHHhc-CCCCEEEEecCCCCCCCHHHHHHHHHHH
Q 027992            5 CHSFLFCGLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKAL   83 (215)
Q Consensus         5 ~~~~~~d~ivV~td~~~i~~~~~~~g~~v~~~~~~~~~~~~~i~~~l~~~~-~~~d~v~~~~~d~Pli~~~~i~~~i~~~   83 (215)
                      .+++ +++|+|+|+++++.++++++|++++....+..+|++++..++..+. .+.|.+++++||+||+++++|+++++.+
T Consensus        54 ~~~~-i~~IvV~t~~~~i~~~~~~~g~~v~~~~~~~~~Gt~~i~~~~~~l~~~~~d~vlv~~gD~Pli~~~~i~~li~~~  132 (264)
T 3k8d_A           54 RESG-AERIIVATDHEDVARAVEAAGGEVCMTRADHQSGTERLAEVVEKCAFSDDTVIVNVQGDEPMIPATIIRQVADNL  132 (264)
T ss_dssp             HHTT-CSEEEEEESCHHHHHHHHHTTCEEEECCTTCCSHHHHHHHHHHHHTCCTTCEEEEECTTCTTCCHHHHHHHHHHH
T ss_pred             HhCC-CCEEEEECCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHhccCCCCEEEEEcCCcccCCHHHHHHHHHHH
Confidence            3444 8999999999999999999999987665566789999888888774 3579999999999999999999999999


Q ss_pred             HcCCCceEEeecccCCC-CccCCCCceEEEEcCCCceecccCCCCCCCCCCC---CCCC-CCeeEEeeeeeechHHHhhC
Q 027992           84 QAAPDAVFSTAVTSLKP-EDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGK---VNPQ-FPYLLHLGIQSYDSNFLKIY  158 (215)
Q Consensus        84 ~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~ip~~~~~~---~~q~-~p~~~~~~~~~~~~~~l~~~  158 (215)
                      .+ .++.+++.+.+++. ..+.+|+.+|++.+++|.+.+|++.++|+.|+..   ..|. .++..+.+.|+|+...+..+
T Consensus       133 ~~-~~~~~~~~~~~v~d~~~~~~p~~vkVv~d~~g~~l~fsr~~ip~~r~~~~~~~~~~~~~~~~~~GiY~y~~~~l~~~  211 (264)
T 3k8d_A          133 AQ-RQVGMATLAVPIHNAEEAFNPNAVKVVLDAEGYALYFSRATIPWDRDRFAEGLETVGDNFLRHLGIYGYRAGFIRRY  211 (264)
T ss_dssp             HT-SSCSEEEEEEECCSHHHHTCTTSCEEEECTTSBEEEEESSCCSCCHHHHHHCSSCCCSCCEEECSEEEEEHHHHHHH
T ss_pred             hh-cCCCEEEEEEEcCCHHHccCCCceEEEECCCCeEEEEecCCCCCCCccccccccccCCcceEEEEEEEECHHHHHHH
Confidence            75 34445555566652 3446788999888899999999999888765310   0121 23678999999999999988


Q ss_pred             cCCCCCCCCCccchhhhhhhhcCCeeEEEEe-cCCCCCCCCHHHHHHHHHHHH
Q 027992          159 PGLHPTPLQLEEDLEQLKVLENGYKMKVIKV-DHEAHGVDAPEDVEKIESFMR  210 (215)
Q Consensus       159 ~~~~~~~~~~~e~l~~~~~~~~g~~v~~~~~-~~~~idIdt~~Dl~~ae~il~  210 (215)
                      ..++++.+|..|.++++++++.|.+|+++.. +..+++||||+||+.|+++|+
T Consensus       212 ~~~~~~~lE~~e~leqlr~le~G~~I~~~~~~~~~~~~IdtpeDl~~a~~~l~  264 (264)
T 3k8d_A          212 VNWQPSPLEHIEMLEQLRVLWYGEKIHVAVAQEVPGTGVDTPEDLERVRAEMR  264 (264)
T ss_dssp             HHSCCCHHHHHHTCTTHHHHHTTCCEEEEECSCCCSCCCCSHHHHHHHHHHC-
T ss_pred             HhCCCChhhhHHHHHHHHHHHCCCceEEEEeCCCCCCCCCCHHHHHHHHHHhC
Confidence            7777788888888999999999999999864 678999999999999999874

>3oam_A 3-deoxy-manno-octulosonate cytidylyltransferase; center for structural genomics of infectious diseases; 1.75A {Vibrio cholerae o1 biovar el tor} SCOP: c.68.1.13

Probab=99.95  E-value=3e-27  Score=190.63  Aligned_cols=203  Identities=40%  Similarity=0.662  Sum_probs=163.2

Q ss_pred             CCCcEEEEcCcHHHHHHHHHcCCeEEeCCCCCCCchHHHHHHHHHhc-CCCCEEEEecCCCCCCCHHHHHHHHHHHHcCC
Q 027992            9 LFCGLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAP   87 (215)
Q Consensus         9 ~~d~ivV~td~~~i~~~~~~~g~~v~~~~~~~~~~~~~i~~~l~~~~-~~~d~v~~~~~d~Pli~~~~i~~~i~~~~~~~   87 (215)
                      .+++|+|+|++++|.+.+.++|++++....+...|++++..++..+. .+.|.+++++||+||+++++|+++++.+.++ 
T Consensus        41 ~~~~ivVv~~~~~i~~~~~~~g~~v~~~~~~~~~Gt~~~~~~~~~l~~~~~d~vlv~~gD~Pli~~~~i~~l~~~~~~~-  119 (252)
T 3oam_A           41 GADRVIIATDDERVEQAVQAFGGVVCMTSPNHQSGTERLAEVVAKMAIPADHIVVNVQGDEPLIPPAIIRQVADNLAAC-  119 (252)
T ss_dssp             TCSEEEEEESCHHHHHHHHHTTCEEEECCTTCCSHHHHHHHHHHHTTCCTTSEEEECCTTCTTCCHHHHHHHHHHHHHS-
T ss_pred             CCCeEEEECCHHHHHHHHHHcCCEEEEcCCCCCCcHHHHHHHHHhcCcCCCCEEEEEeCCeeecCHHHHHHHHHHHHhc-
Confidence            48999999999999999999999987665566688988888888773 2568999999999999999999999999753 


Q ss_pred             CceEEeecccCC-CCccCCCCceEEEEcCCCceecccCCCCCCCCCC--CCCC--CCCeeEEeeeeeechHHHhhCcCCC
Q 027992           88 DAVFSTAVTSLK-PEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSG--KVNP--QFPYLLHLGIQSYDSNFLKIYPGLH  162 (215)
Q Consensus        88 ~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~ip~~~~~--~~~q--~~p~~~~~~~~~~~~~~l~~~~~~~  162 (215)
                      ++.+++.+.++. +..+.+|+.++++.+++|.+.+|++.++|+.++.  ..++  ..+...+.+.|+|+.++|..+..+.
T Consensus       120 ~~~~~~~~~~v~~~~~~~~p~~g~vv~d~~g~v~~fsr~~i~~~~~~~~~~~~~~~~~~~~n~GiY~~~~~~l~~~~~~~  199 (252)
T 3oam_A          120 SAPMATLAVEIEDEAEVFNPNAVKVITDKSGYALYFSRATIPWDRDNFAKADKAIVQPLLRHIGIYAYRAGFINTYLDWQ  199 (252)
T ss_dssp             SCSEEEEEEEECCHHHHTCTTSCEEEECTTSBEEEEESSCSSCCHHHHHSSSCCCCSCEEEEEEEEEEETTHHHHHHHSC
T ss_pred             CCCEEEEeeecCCHHHhhCCCceEEEECCCCeEEEEeCCCCCCCCCccccccccccccceEEEEEEEcCHHHHHHHHcCC
Confidence            333444445554 2335678888888888999999999988876531  0111  1236779999999999998887777


Q ss_pred             CCCCCCccchhhhhhhhcCCeeEEEEe-cCCCCCCCCHHHHHHHHHHHHhh
Q 027992          163 PTPLQLEEDLEQLKVLENGYKMKVIKV-DHEAHGVDAPEDVEKIESFMRER  212 (215)
Q Consensus       163 ~~~~~~~e~l~~~~~~~~g~~v~~~~~-~~~~idIdt~~Dl~~ae~il~~~  212 (215)
                      ++.+++.|.++++++++.|.+|.++.. +...+|||||+||+.|+++++.+
T Consensus       200 ~~~~e~~E~le~lr~l~~G~~i~~~~~~~~~~~~idt~~dl~~a~~~~~~r  250 (252)
T 3oam_A          200 PSQLEKIECLEQLRVLWHGEKIHVAVALEAPPAGVDTPEDLEVVRRIVAER  250 (252)
T ss_dssp             CCHHHHHHTCTTHHHHHTTCCEEEEECSSCCCCCCCSHHHHHHHHHHHHHT
T ss_pred             CCcccccchhHHHHHHHCCCeEEEEEecCCCCCCCCCHHHHHHHHHHHHhh
Confidence            777788888999998889999999865 46889999999999999999876

>1vic_A 3-deoxy-manno-octulosonate cytidylyltransferase; structural genomics; 1.80A {Haemophilus influenzae} SCOP: c.68.1.13 PDB: 1vh3_A 3duv_A*

Probab=99.88  E-value=1.6e-21  Score=157.77  Aligned_cols=204  Identities=40%  Similarity=0.654  Sum_probs=142.6

Q ss_pred             CCCcEEEEcCcHHHHHHHHHcCCeEEeCCCCCCCchHHHHHHHHHhc-CCCCEEEEecCCCCCCCHHHHHHHHHHHHc-C
Q 027992            9 LFCGLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQA-A   86 (215)
Q Consensus         9 ~~d~ivV~td~~~i~~~~~~~g~~v~~~~~~~~~~~~~i~~~l~~~~-~~~d~v~~~~~d~Pli~~~~i~~~i~~~~~-~   86 (215)
                      .+++|+|+|+++++.++++++|+.++.++....+|++++..++..+. ...|.+++++||+||+++++|+++++.+.+ +
T Consensus        41 ~~~~ivvv~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~  120 (262)
T 1vic_A           41 GASRVIIATDNENVADVAKSFGAEVCMTSVNHNSGTERLAEVVEKLAIPDNEIIVNIQGDEPLIPPVIVRQVADNLAKFN  120 (262)
T ss_dssp             TCSEEEEEESCHHHHHHHHHTTCEEEECCCSSCCHHHHHHHHHHHTTCCTTCEEEECCTTCTTCCHHHHHHHHHHHHHHT
T ss_pred             CCceEEEECCcHHHHHHHHhcCCEEEECCccccCChHHHHHHHHHhccCCCCEEEEEeCCcCccCHHHHHHHHHHHHhcC
Confidence            34899999999999999988999987776566788887766666663 246899999999999999999999999864 3


Q ss_pred             CCceEEeecccCCC-CccCCCCceEEEEcCCCceecccCCCCCCCCCCC-----C-CCCCC--eeEEeeeeeechHHHhh
Q 027992           87 PDAVFSTAVTSLKP-EDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGK-----V-NPQFP--YLLHLGIQSYDSNFLKI  157 (215)
Q Consensus        87 ~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~ip~~~~~~-----~-~q~~p--~~~~~~~~~~~~~~l~~  157 (215)
                      .++++.  +.+... ++..+|..++++.+++|.+..|.+..+|+.|+..     + ..++|  +..+.+.|+|+.+.+..
T Consensus       121 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~v~~f~~~~~~~~r~~~~~~~~~~~~~~p~~~~~~~giy~~~~~~l~~  198 (262)
T 1vic_A          121 VNMASL--AVKIHDAEELFNPNAVKVLTDKDGYVLYFSRSVIPYDRDQFMNLQDVQKVQLSDAYLRHIGIYAYRAGFIKQ  198 (262)
T ss_dssp             CSEEEE--EEECCCHHHHTCTTSCEEEECTTSBEEEEESSCSSCCHHHHTTCSCGGGCCCCTTCEEEEEEEEEEHHHHHH
T ss_pred             CCEEEE--EEecCCHHHhcCCCceEEEECCCCCEeeeecCCCCcCCccccccccccccccccceEEEEEEEEeeHHHHHH
Confidence            344443  334421 1112345666665677888777665544333210     0 11555  56788889998877665


Q ss_pred             CcCCCCCCCCCccchhhhhhhhcCCeeEEEEec-CCCCCCCCHHHHHHHHHHHHhhcC
Q 027992          158 YPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVD-HEAHGVDAPEDVEKIESFMRERNL  214 (215)
Q Consensus       158 ~~~~~~~~~~~~e~l~~~~~~~~g~~v~~~~~~-~~~idIdt~~Dl~~ae~il~~~~~  214 (215)
                      +.....+..+..|.++..++++.|.++.+++++ ..++|||||+||..|+.+++.+|.
T Consensus       199 ~~~~~~~~~~~~e~~~~~~~l~~g~~v~~~~~~~~~~~dI~tpeDl~~a~~~l~~~~~  256 (262)
T 1vic_A          199 YVQWAPTQLENLEKLEQLRVLYNGERIHVELAKEVPAVGVDTAEDLEKVRAILAANGS  256 (262)
T ss_dssp             HHHSCCCHHHHHHTCTTHHHHHTTCCEEEEECSSCCCCCCCSHHHHHHHHHHHHHTCC
T ss_pred             HHhCCCCchhhhhhHHHHHHHHCCCeEEEEEeCCCCCCCCCCHHHHHHHHHHHHhcCc
Confidence            433222222222333444555578899999987 799999999999999999988763

>1h7e_A 3-deoxy-manno-octulosonate cytidylyltransferase; nucleotidyltransferase, CMP-KDO synthetase, nucleoside monophosphate glycosides; 1.83A {Escherichia coli} SCOP: c.68.1.13 PDB: 1gqc_A* 1gq9_A 1h6j_A 1h7f_A* 1h7g_A* 1h7h_A* 1h7t_A*

Probab=99.87  E-value=1.9e-20  Score=149.62  Aligned_cols=199  Identities=32%  Similarity=0.552  Sum_probs=138.5

Q ss_pred             cccCCCCcEEEEcCcHHHHHHHHHcCCeEEeCCCCCCCchHHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHHHH
Q 027992            5 CHSFLFCGLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQ   84 (215)
Q Consensus         5 ~~~~~~d~ivV~td~~~i~~~~~~~g~~v~~~~~~~~~~~~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~~~   84 (215)
                      .+++.+++|+|+|+++++.+.+.++|+.++.++.+..+|++++..++..+  +.|.+++++||+||+++++|+++++.+.
T Consensus        38 ~~~~~~~~ivvv~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~~lv~~~D~P~~~~~~i~~l~~~~~  115 (245)
T 1h7e_A           38 LQVAGVAEVWVATDDPRVEQAVQAFGGKAIMTRNDHESGTDRLVEVMHKV--EADIYINLQGDEPMIRPRDVETLLQGMR  115 (245)
T ss_dssp             HTCTTCCEEEEEESCHHHHHHHHHTTCEEEECCSCCSSHHHHHHHHHHHS--CCSEEEECCTTCTTCCHHHHHHHHHHHH
T ss_pred             HhCCCCCeEEEECCcHHHHHHHHHcCCeEEeCCCccCCcHHHHHHHHHhC--CCCEEEEEcCCcCcCCHHHHHHHHHHHH
Confidence            34555699999999999999998899998777656667888888888877  4689999999999999999999999986


Q ss_pred             cC--CCceEEeecccCCCCccCCCCceEEEEcCCCceecccCCCCCCCCCCCCCCC--CCeeEEeeeeeechHHHhhCcC
Q 027992           85 AA--PDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQ--FPYLLHLGIQSYDSNFLKIYPG  160 (215)
Q Consensus        85 ~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ip~~~~~~~~q~--~p~~~~~~~~~~~~~~l~~~~~  160 (215)
                      ++  .+.++.+  .+..+....+|.+++++.+++|.+..|.+...|..     +++  .+.+.+.+.|+|+.+.+..+..
T Consensus       116 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-----r~~~~~~~~~~~g~y~~~~~~l~~~~~  188 (245)
T 1h7e_A          116 DDPALPVATLC--HAISAAEAAEPSTVKVVVNTRQDALYFSRSPIPYP-----RNAEKARYLKHVGIYAYRRDVLQNYSQ  188 (245)
T ss_dssp             HCTTCCEEEEE--EEECHHHHTCTTSCEEEECTTCBEEEEESSCSSCC-----TTGGGCCEEEEEEEEEEEHHHHHHGGG
T ss_pred             hCCCCCEEEEe--ecCCHHHhcCCCCcEEEECCCCcEEEeecCCCCCC-----cccccCceeEEEEEEEcCHHHHHHHHh
Confidence            53  3444443  23211111355677766567788776665433321     232  2355688899999887765433


Q ss_pred             CCCCCCCCccchhhhhhhhcCCeeEEEEecCCCCCCCCHHHHHHHHHHHHhh
Q 027992          161 LHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAPEDVEKIESFMRER  212 (215)
Q Consensus       161 ~~~~~~~~~e~l~~~~~~~~g~~v~~~~~~~~~idIdt~~Dl~~ae~il~~~  212 (215)
                      +..+.++..+.+...++++.|.++..++++..++|||||+||..|+.+++.+
T Consensus       189 ~~~~~~~~td~~~~~~~~~~g~~v~~~~~~~~~~dIdtp~Dl~~a~~~l~~~  240 (245)
T 1h7e_A          189 LPESMPEQAESLEQLRLMNAGINIRTFEVAATGPGVDTPACLEKVRALMAQE  240 (245)
T ss_dssp             SCCCHHHHHHTCTTHHHHHTTCCEEEEECCCCCCCSSSHHHHHHHHHHHHHH
T ss_pred             CCCCccccchhhHHHHHHHCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHHHh
Confidence            2222111111122233334688999999888999999999999999998754

>2y6p_A 3-deoxy-manno-octulosonate cytidylyltransferase; lipid A; HET: CTP; 2.10A {Aquifex aeolicus}

Probab=99.81  E-value=1.9e-18  Score=137.04  Aligned_cols=191  Identities=34%  Similarity=0.557  Sum_probs=131.3

Q ss_pred             CCcEEEEcCcHHHHHHHHHcCCeEEeCCCCCCCchHHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHHHHcCCCc
Q 027992           10 FCGLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDA   89 (215)
Q Consensus        10 ~d~ivV~td~~~i~~~~~~~g~~v~~~~~~~~~~~~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~~~~~~~~   89 (215)
                      +++|+|+|+++++.+.++++ +.++.++.+..+|++++..++..+  +.|.+++++||+||+++++|+++++.+.++. .
T Consensus        41 ~~~i~v~~~~~~i~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~--~~~~vlv~~~D~P~~~~~~i~~l~~~~~~~~-~  116 (234)
T 2y6p_A           41 GERVILATDSERVKEVVEDL-CEVFLTPSDLPSGSDRVLYVVRDL--DVDLIINYQGDEPFVYEEDIKLIFRELEKGE-R  116 (234)
T ss_dssp             TSCEEEEESCHHHHHHHTTT-SEEEECCTTCCSHHHHHHHHHTTC--CCSEEEECCTTCCCCCHHHHHHHHHHHHHTC-S
T ss_pred             CCEEEEECChHHHHHHHHhc-eEEEECCcccccchHHHHHHHHhC--CCCEEEEecCCcCcCCHHHHHHHHHHHHhCC-C
Confidence            89999999998888888777 777666666668888877777665  4689999999999999999999999987543 3


Q ss_pred             eEEeecccCCCCccCCCCceEEEEcCCCceecccCCCCCCCCCCCCCC-CCCeeEEeeeeeechHHHhhCcCCCCCCCCC
Q 027992           90 VFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNP-QFPYLLHLGIQSYDSNFLKIYPGLHPTPLQL  168 (215)
Q Consensus        90 ~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ip~~~~~~~~q-~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~  168 (215)
                      ++++.. + ...+..+|.+++++.+++|.+..|.+.+.++.    ++| +.+...+.+.|+|+.+.+..+.......++.
T Consensus       117 ~~~~~~-~-~~~~~~~~~~~~~~~~~~g~v~~~~e~~~~~~----~~~~~~~~~~~~giy~~~~~~l~~~~~~~~~~~~~  190 (234)
T 2y6p_A          117 VVTLAR-K-DKEAYERPEDVKVVLDREGYALYFSRSPIPYF----RKNDTFYPLKHVGIYGFRKETLMEFGAMPPSKLEQ  190 (234)
T ss_dssp             EEEEEE-E-CSGGGGCTTSCEEEECTTSBEEEEESSCCSCC----SSCCSSCCEEEEEEEEEEHHHHHHHHHSCCCHHHH
T ss_pred             eEEEec-C-CHHHhcCCCceEEEEcCCCCEeeeecCCCCcc----cccccceeeEEEEEEEcCHHHHHHHHhCCCCccch
Confidence            444322 2 11112355676665567787765654432211    222 3345568889999987766543222221122


Q ss_pred             ccchhhhhhhhcCCeeEEEEecCCCCCCCCHHHHHHHHHHHH
Q 027992          169 EEDLEQLKVLENGYKMKVIKVDHEAHGVDAPEDVEKIESFMR  210 (215)
Q Consensus       169 ~e~l~~~~~~~~g~~v~~~~~~~~~idIdt~~Dl~~ae~il~  210 (215)
                      .+.+...+.+..|.++..++.+..++||||++||..|+.+++
T Consensus       191 ~d~~~~~~~~~~g~~v~~~~~~~~~~dI~t~~dl~~a~~~~~  232 (234)
T 2y6p_A          191 IEGLEQLRLLENGIKIKVLITENYYHGVDTEEDLKIVEEKLK  232 (234)
T ss_dssp             HHTCTHHHHHHTTCCCEEEECCSCCCCCCSHHHHHHHHHHCC
T ss_pred             hhHHHHHHHHHCCCeEEEEEeCCcccCCCCHHHHHHHHHHHh
Confidence            222233344446889999998889999999999999999875

>3q80_A 2-C-methyl-D-erythritol 4-phosphate cytidyltransf; TB structural genomics consortium, TBSGC, rossman fold; HET: CDM; 2.00A {Mycobacterium tuberculosis} SCOP: c.68.1.0 PDB: 3q7u_A* 3okr_A 2xwn_A*

Probab=99.78  E-value=2.6e-18  Score=136.53  Aligned_cols=178  Identities=21%  Similarity=0.251  Sum_probs=118.4

Q ss_pred             cccCCCCcEEEEcCcHHHH---HHHHHcCCeEEeCCCCCCCchHHHHHHHHHhcCC--CCEEEEecCCCCCCCHHHHHHH
Q 027992            5 CHSFLFCGLVVATDDEKIA---ECCQQFGADVIMTSESCRNGTERCNEALQKLEKK--YDIVVNIQGDEPLIEPEIIDGV   79 (215)
Q Consensus         5 ~~~~~~d~ivV~td~~~i~---~~~~~~g~~v~~~~~~~~~~~~~i~~~l~~~~~~--~d~v~~~~~d~Pli~~~~i~~~   79 (215)
                      .+++.+++|+|+++.+++.   +.+.. ++.++... .  +...++++|+..+...  .|+|++|+||+||+++++|+++
T Consensus        46 ~~~~~~~~ivVv~~~~~~~~~~~~~~~-~v~~v~gg-~--~r~~sv~~gl~~~~~~~~~d~Vlv~~~d~Pli~~~~i~~l  121 (231)
T 3q80_A           46 LDSGVVDTVVVAVPADRTDEARQILGH-RAMIVAGG-S--NRTDTVNLALTVLSGTAEPEFVLVHDAARALTPPALVARV  121 (231)
T ss_dssp             HHTSCCCEEEEEECGGGHHHHHHHHGG-GCEEEECC-S--SHHHHHHHHHGGGC---CCSEEEECCTTCTTCCHHHHHHH
T ss_pred             HhCCCCCeEEEECChHHHHHHHHHhcC-CeEEEcCC-C--chHHHHHHHHHHhhhcCCCCEEEEEcCCcCCCCHHHHHHH
Confidence            3456799999999876543   33332 45544321 1  2356789999888532  6899999999999999999999


Q ss_pred             HHHHHcCCCceEEeecccCCCCccCCCCceEEEEcCCCceecccCCCCCCCCCCCCCCCCCeeEEeeeeeechHHHhhC-
Q 027992           80 VKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIY-  158 (215)
Q Consensus        80 i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ip~~~~~~~~q~~p~~~~~~~~~~~~~~l~~~-  158 (215)
                      ++.+.++.++++++  .|..       ++++.+ +++|.+.   +  ++ .|+.       .+..+++|+|+...|.+. 
T Consensus       122 i~~~~~~~~~~i~~--~p~~-------dt~~~~-~~~g~v~---~--~~-~r~~-------l~~~qTPq~F~~~~L~~a~  178 (231)
T 3q80_A          122 VEALRDGYAAVVPV--LPLS-------DTIKAV-DANGVVL---G--TP-ERAG-------LRAVQTPQGFTTDLLLRSY  178 (231)
T ss_dssp             HHHHHTTCSEEEEE--ECCS-------SCEEEE-CTTSBEE---E--CC-CGGG-------EEEECSCEEEEHHHHHHHH
T ss_pred             HHHHhhcCCeEEEE--Eecc-------CCEEEE-cCCCcEE---E--ec-chhh-------eEEEcCCcEEEHHHHHHHH
Confidence            99987645666664  4554       678765 5566543   1  12 2222       344566799988766542 


Q ss_pred             cCCCCCCCCCccchhhhhhhh-cCCeeEEEEecCCCCCCCCHHHHHHHHHHHH
Q 027992          159 PGLHPTPLQLEEDLEQLKVLE-NGYKMKVIKVDHEAHGVDAPEDVEKIESFMR  210 (215)
Q Consensus       159 ~~~~~~~~~~~e~l~~~~~~~-~g~~v~~~~~~~~~idIdt~~Dl~~ae~il~  210 (215)
                      ....... +.....+...+++ .|.++.+++++..|+|||||+||.+||++|+
T Consensus       179 ~~~~~~n-~~~~~TD~~~~~~~~g~~v~~v~g~~~n~kIt~p~Dl~~ae~~l~  230 (231)
T 3q80_A          179 QRGSLDL-PAAEYTDDASLVEHIGGQVQVVDGDPLAFKITTKLDLLLAQAIVR  230 (231)
T ss_dssp             HHHTC------CCSSSHHHHHHTTCCCEEEECCGGGCCCCSHHHHHHHHHHHH
T ss_pred             HHHHhhc-CCCCCCcHHHHHHHcCCcEEEEECCccccCcCCHHHHHHHHHHhc
Confidence            2211100 0011124444444 7999999999999999999999999999986

>1qwj_A Cytidine monophospho-N-acetylneuraminic acid synthetase; CMP-5-N-acetylneuraminic acid synthetase, CMP-NEU5AC, sialic acid, glycosylation; HET: NCC; 2.80A {Mus musculus} SCOP: c.68.1.13

Probab=99.74  E-value=4.5e-17  Score=129.03  Aligned_cols=179  Identities=19%  Similarity=0.183  Sum_probs=120.0

Q ss_pred             ccccCCCCcEEEEcCcHHHHHHHHHcCCeEEeCCC----CCCCchHHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHH
Q 027992            4 MCHSFLFCGLVVATDDEKIAECCQQFGADVIMTSE----SCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGV   79 (215)
Q Consensus         4 a~~~~~~d~ivV~td~~~i~~~~~~~g~~v~~~~~----~~~~~~~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~   79 (215)
                      +.+++.+++|+|+|+++++.++++++|++++.++.    ...+++.++.+|+..+. +.|.+++++||+||+++++|+++
T Consensus        38 ~~~~~~~~~ivv~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~v~~al~~~~-~~d~vlv~~~D~Pli~~~~i~~l  116 (229)
T 1qwj_A           38 ALDAGVFQSVWVSTDHDEIENVAKQFGAQVHRRSSETSKDSSTSLDAIVEFLNYHN-EVDIVGNIQATSPCLHPTDLQKV  116 (229)
T ss_dssp             HHHHTCCSEEEEEESCHHHHHHHHHTTCEEEECCGGGSSTTCCHHHHHHHHHTTCT-TCSEEEEECTTCTTCCHHHHHHH
T ss_pred             HHhCCCcCEEEEECChHHHHHHHHHcCCEEEeChhhhcCCCCcHHHHHHHHHHhcC-CCCEEEEecCCCCcCCHHHHHHH
Confidence            34556689999999999999999999999877763    33455678889988773 56899999999999999999999


Q ss_pred             HHHHHc-CCCceEEeecccCCCCccCCCCceEEEEcCCCceecccCCCCCCCCCCCCCCCCCe--eEEeeeeeechHHHh
Q 027992           80 VKALQA-APDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPY--LLHLGIQSYDSNFLK  156 (215)
Q Consensus        80 i~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ip~~~~~~~~q~~p~--~~~~~~~~~~~~~l~  156 (215)
                      ++.+.+ +.++++++.  +.     .+|...++ .+  |.. .|.+..+++.....++|+.|.  ..+.+.|+|+.+.+.
T Consensus       117 ~~~~~~~~~~~~~~~~--~~-----~~p~~~~v-~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~n~giY~~~~~~l~  185 (229)
T 1qwj_A          117 AEMIREEGYDSVFSVV--RR-----HQFRWSEI-QK--GVR-EVTEPLNLNPAKRPRRQDWDGELYENGSFYFAKRHLIE  185 (229)
T ss_dssp             HHHHHSSCCSEEEEEE--EE-----CCCEECCC-CS--STT-CCCCBSSSBTTBCCCTTTSCCEEEEEEEEEEEEHHHHH
T ss_pred             HHHHHhCCCCEEEEEe--ec-----cChhHhhc-cc--ccc-ccccccccccccccCCCCCCceEEEeeEEEEEEHHHhc
Confidence            999865 335555543  22     13333332 12  321 133322332200014566654  446777888876551


Q ss_pred             hCcCCCCCCCCCccchhhhhhhhcCCeeEEEEec-CCCCCCCCHHHHHHHHHHHHhhc
Q 027992          157 IYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVD-HEAHGVDAPEDVEKIESFMRERN  213 (215)
Q Consensus       157 ~~~~~~~~~~~~~e~l~~~~~~~~g~~v~~~~~~-~~~idIdt~~Dl~~ae~il~~~~  213 (215)
                      .                   .+..|..+.++..+ ...+||||++||..|+.+++..+
T Consensus       186 ~-------------------~~~~g~~~~~~~~~~~~~~dIdt~~Dl~~a~~~~~~~~  224 (229)
T 1qwj_A          186 M-------------------GYLQGGKMAYYEMRAEHSVDIDVDIDWPIAEQRVLRFG  224 (229)
T ss_dssp             T-------------------TCSSCSSEEEEECCGGGCCCHHHHCSHHHHHHHHHHHS
T ss_pred             c-------------------ccccCCeEEEEECCcccccCCCCHHHHHHHHHHHHHhc
Confidence            0                   01145566553544 68999999999999999998764

>1ezi_A CMP-N-acetylneuraminic acid synthetase; homodimer, alpha-beta-alpha, transferase; 2.00A {Neisseria meningitidis} SCOP: c.68.1.13 PDB: 1eyr_A

Probab=99.73  E-value=5.5e-17  Score=128.24  Aligned_cols=177  Identities=18%  Similarity=0.190  Sum_probs=115.1

Q ss_pred             cccCCCCcEEEEcCcHHHHHHHHHcCCeEEeCCCCCCC---c-hHHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHH
Q 027992            5 CHSFLFCGLVVATDDEKIAECCQQFGADVIMTSESCRN---G-TERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVV   80 (215)
Q Consensus         5 ~~~~~~d~ivV~td~~~i~~~~~~~g~~v~~~~~~~~~---~-~~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i   80 (215)
                      .+++.+++|+|+|+++++.++++++|+.++.++..+..   | ..++++|+..+..+.|.+++++||+||+++++|++++
T Consensus        40 ~~~~~~~~ivvv~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~~sv~~~l~~~~~~~d~vlv~~~D~P~~~~~~i~~l~  119 (228)
T 1ezi_A           40 ISSKCFDRIIVSTDGGLIAEEAKNFGVEVVLRPAELASDTASSISGVIHALETIGSNSGTVTLLQPTSPLRTGAHIREAF  119 (228)
T ss_dssp             HHHCCCSEEEEEESCHHHHHHHHHTTCEEEECCC------CHHHHHHHHHHHHHTCCSEEEEECCTTCTTCCHHHHHHHH
T ss_pred             HhCCCCCEEEEECCCHHHHHHHHHcCCEEEeCchHHcCCCCChHHHHHHHHHHhCCCCCEEEEEcCCCCcCCHHHHHHHH
Confidence            34556899999999999988888899988767653332   2 3468889888743468999999999999999999999


Q ss_pred             HHHHc-CCCceEEeecccCCCCccCCCCceEEEEcCCCceecccC-CCCCCCCCCCCCCCCCee--EEeeeeeechHHHh
Q 027992           81 KALQA-APDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSR-GLIPYNKSGKVNPQFPYL--LHLGIQSYDSNFLK  156 (215)
Q Consensus        81 ~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~ip~~~~~~~~q~~p~~--~~~~~~~~~~~~l~  156 (215)
                      +.+.+ +.++++++  .+..    .+|....++ +++|.+..|.+ ... +    .++|+++..  .+.+.|+|....+.
T Consensus       120 ~~~~~~~~~~~~~~--~~~~----~~p~~~~~~-~~~g~~~~~~~~~~~-~----~~~~~~~~~~~~~~giy~~~~~~l~  187 (228)
T 1ezi_A          120 SLFDEKIKGSVVSA--CPME----HHPLKTLLQ-INNGEYAPMRHLSDL-E----QPRQQLPQAFRPNGAIYINDTASLI  187 (228)
T ss_dssp             TTCCTTTCCCEEEE--EECS----SCTTSCEEE-CC--CEEESSCHHHH-T----CCGGGSCCEEEEEEEEEEEEHHHHH
T ss_pred             HHHHhcCCCEEEEE--EecC----CCcceeeEE-cCCCcEeeccccccc-c----CCcccCchhheeeeEEEEEeHHHHh
Confidence            88754 33555553  3432    113333333 56676654432 110 0    134555433  34556777766554


Q ss_pred             hCcCCCCCCCCCccchhhhhhhhcCCeeEEEEec-CCCCCCCCHHHHHHHHHHHHh
Q 027992          157 IYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVD-HEAHGVDAPEDVEKIESFMRE  211 (215)
Q Consensus       157 ~~~~~~~~~~~~~e~l~~~~~~~~g~~v~~~~~~-~~~idIdt~~Dl~~ae~il~~  211 (215)
                      ...                ++  .|.++..+..+ ..++|||||+||..|+.+++.
T Consensus       188 ~~~----------------~~--~g~~v~~~~~~~~~~~dIdtpeDl~~a~~~l~~  225 (228)
T 1ezi_A          188 ANN----------------CF--FIAPTKLYIMSHQDSIDIDTELDLQQAENILNH  225 (228)
T ss_dssp             HHT----------------SS--CCSSCEEEECCTGGGCCCCSHHHHHHHHHHHC-
T ss_pred             hCC----------------cc--cCCceEEEEeCcccccCCCCHHHHHHHHHHHHh
Confidence            321                11  35666666654 689999999999999999865

>3f1c_A Putative 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 2; structural genomics, PSI-2, protein structure initiative; 2.30A {Listeria monocytogenes str} SCOP: c.68.1.0

Probab=99.64  E-value=9.6e-15  Score=116.83  Aligned_cols=179  Identities=17%  Similarity=0.232  Sum_probs=117.0

Q ss_pred             cccCCCCcEEEEcCcHH---HHHHHHHcCCe--E-EeCCCCCCCchHHHHHHHHHhcC-----CCCEEEEecCCCCCCCH
Q 027992            5 CHSFLFCGLVVATDDEK---IAECCQQFGAD--V-IMTSESCRNGTERCNEALQKLEK-----KYDIVVNIQGDEPLIEP   73 (215)
Q Consensus         5 ~~~~~~d~ivV~td~~~---i~~~~~~~g~~--v-~~~~~~~~~~~~~i~~~l~~~~~-----~~d~v~~~~~d~Pli~~   73 (215)
                      .+++.+++|+|++..+.   +.+.+++++..  + +.....  +-..+++.|+..+..     +.|.|++++||+||+++
T Consensus        43 ~~~~~~~~ivvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~sv~~al~~l~~~~~~~~~~~vlv~~~d~Pli~~  120 (246)
T 3f1c_A           43 ILNTRFDKILISSPKEWMNHAEDNIKKYISDDRIVVIEGGE--DRNETIMNGIRFVEKTYGLTDDDIIVTHDAVRPFLTH  120 (246)
T ss_dssp             HTCTTCSEEEEEECGGGHHHHHHHHHHHCCCTTEEEEECCS--SHHHHHHHHHHHHHHHTCCCTTCEEEEEETTCTTCCH
T ss_pred             HcCCCCCEEEEEeCHHHHHHHHHHHHHhCCCCCEEEECCCC--chHHHHHHHHHHHhhhhcCCCCCEEEEecCcccCCCH
Confidence            34556999999997654   44566666422  2 222212  334578889888743     36899999999999999


Q ss_pred             HHHHHHHHHHHcCCCceEEeecccCCCCccCCCCceEEEEcCCCceecccCCCCCCCCCCCCCCCCCeeEEeeeeeechH
Q 027992           74 EIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSN  153 (215)
Q Consensus        74 ~~i~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ip~~~~~~~~q~~p~~~~~~~~~~~~~  153 (215)
                      ++|+++++.+.++ ++.+++  .+..       ++++.. +++|.+..     + ..|+.       .+..+++++|+..
T Consensus       121 ~~i~~li~~~~~~-~a~i~~--~~~~-------d~i~~~-~~~~~v~~-----~-~~r~~-------l~~~qtpq~f~~~  176 (246)
T 3f1c_A          121 RIIEENIDAALET-GAVDTV--IEAL-------DTIVES-SNHEVITD-----I-PVRDH-------MYQGQTPQSFNMK  176 (246)
T ss_dssp             HHHHHHHHHHHHT-SEEEEE--EECS-------SCEEEC-SSSSBCCB-----C-CCGGG-------EEEEEEEEEEEHH
T ss_pred             HHHHHHHHHHHhc-CCEEEE--Eecc-------ceEEEe-cCCCeEEE-----e-cChHH-------hhhhcCCceeEHH
Confidence            9999999999764 555553  3443       566542 34443221     1 12211       3456678899987


Q ss_pred             HHhh-CcCCCCCCCCCccc-hhhhhhhh-cCCeeEEEEecCCCCCCCCHHHHHHHHHHHHhh
Q 027992          154 FLKI-YPGLHPTPLQLEED-LEQLKVLE-NGYKMKVIKVDHEAHGVDAPEDVEKIESFMRER  212 (215)
Q Consensus       154 ~l~~-~~~~~~~~~~~~e~-l~~~~~~~-~g~~v~~~~~~~~~idIdt~~Dl~~ae~il~~~  212 (215)
                      .|.+ +.....   ....+ .+....++ .|.++.+++++..++|||||+||..||++|+.+
T Consensus       177 ~L~~a~~~~~~---~~~~~~TD~~~~~~~~g~~v~~v~~~~~~~~Itt~~Dl~~ae~~l~~~  235 (246)
T 3f1c_A          177 KVFNHYQNLTP---EKKQILTDACKICLLAGDDVKLVKGEIFNIKITTPYDLKVANAIIQER  235 (246)
T ss_dssp             HHHHHHHTSCH---HHHHHCCCHHHHHHHTTCCCEEEECCTTCCCCCSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH---cCCCccCcHHHHHHHcCCCEEEEeCCCCccCcCCHHHHHHHHHHHhcc
Confidence            6654 222210   01112 23334333 799999999999999999999999999999875

>2yc3_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran chloroplastic; transferase, non-mevalonate-pathway, herbicide, allosteric P; HET: MW5; 1.40A {Arabidopsis thaliana} PDB: 2yc5_A* 1w77_A* 2ycm_A*

Probab=99.46  E-value=6e-13  Score=104.77  Aligned_cols=178  Identities=16%  Similarity=0.191  Sum_probs=105.8

Q ss_pred             ccCCCCcEEEEcCcHH--HHH-HHHHcCCeE-EeCCCCCCCchHHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHH
Q 027992            6 HSFLFCGLVVATDDEK--IAE-CCQQFGADV-IMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVK   81 (215)
Q Consensus         6 ~~~~~d~ivV~td~~~--i~~-~~~~~g~~v-~~~~~~~~~~~~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~   81 (215)
                      +++.+++|+|+|+++.  +.+ +...+|..+ +..+ . .+-..++++|+..+..+.+.+++++||+||+++++|+++++
T Consensus        44 ~~~~~~~ivvv~~~~~~~~~~~~~~~~~~~v~~~~~-~-~~~~~sv~~al~~~~~~~~~vl~~d~d~P~~~~~~i~~l~~  121 (228)
T 2yc3_A           44 RMPEVKEIVVVCDPFFRDIFEEYEESIDVDLSFAIP-G-KERQDSVYSGLQEIDVNSELVCIHDSARPLVNTEDVEKVLK  121 (228)
T ss_dssp             HCTTEEEEEEECCGGGHHHHHTTTTTSSSEEEEECC-C-SSHHHHHHHHHTTSCTTCSEEEEEETTCTTCCHHHHHHHHH
T ss_pred             cCCCCCeEEEEEChHHHHHHHHHHHhCCCcEEEECC-C-CCHHHHHHHHHHhhccCCCEEEEecCCCccCCHHHHHHHHH
Confidence            4457899999997653  432 333455554 3332 1 23345788888877545689999999999999999999999


Q ss_pred             HHHcCCCceEEeecccCCCCccCCCCceEEEEcCCCceecccCCCCCCCCCCCCCCCCCeeEEeeeeeechHHHhh-CcC
Q 027992           82 ALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKI-YPG  160 (215)
Q Consensus        82 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ip~~~~~~~~q~~p~~~~~~~~~~~~~~l~~-~~~  160 (215)
                      .+.+. ++.+.+  .+..       ++++.+ +++|.+.   + . + .+     ..  .+...+.|+|+...+.+ +..
T Consensus       122 ~~~~~-~~~i~~--~~~~-------~~~~~~-~~~~~v~---~-~-~-~~-----~~--~~~~~~~~~f~~~~l~~~~~~  177 (228)
T 2yc3_A          122 DGSAV-GAAVLG--VPAK-------ATIKEV-NSDSLVV---K-T-L-DR-----KT--LWEMQTPQVIKPELLKKGFEL  177 (228)
T ss_dssp             HHHHH-SEEEEE--EECC-------SCCCCB-CTTSCBC---C-C-C-SC-----CC--CEEEEEEEEECHHHHHHHHHH
T ss_pred             HHHhc-CceEEE--Eecc-------ceEEEE-cCCCceE---E-e-c-Cc-----cc--eEEEeCCcEEEHHHHHHHHHH
Confidence            98653 333332  2332       233333 3444322   1 1 1 11     11  23455688898754433 211


Q ss_pred             CCCCCCCCccchhhhhhh-hcCCeeEEEEecCCCCCCCCHHHHHHHHHHHHhh
Q 027992          161 LHPTPLQLEEDLEQLKVL-ENGYKMKVIKVDHEAHGVDAPEDVEKIESFMRER  212 (215)
Q Consensus       161 ~~~~~~~~~e~l~~~~~~-~~g~~v~~~~~~~~~idIdt~~Dl~~ae~il~~~  212 (215)
                      +........   +...++ ..|.++..++.+..++|||||+||..|+.+++.+
T Consensus       178 ~~~~~~~~~---~~~~~l~~~g~~v~~~~~~~~~~dIdtpeDl~~a~~~l~~~  227 (228)
T 2yc3_A          178 VKSEGLEVT---DDVSIVEYLKHPVYVSQGSYTNIKVTTPDDLLLAERILSED  227 (228)
T ss_dssp             HHHHTCCCC---STTHHHHHSSSCCEEEECCTTCCCCCSHHHHHHHHHHHTC-
T ss_pred             HHhcCCCcc---cHHHHHHHcCCceEEEeCCccccCcCCHHHHHHHHHHHhhc
Confidence            100000001   111222 2688887777777899999999999999998754

>1vpa_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; TM1393, JCSG, joint center for structural GENO PSI, protein structure initiative; HET: CTP; 2.67A {Thermotoga maritima} SCOP: c.68.1.13

Probab=99.42  E-value=1e-11  Score=98.07  Aligned_cols=173  Identities=17%  Similarity=0.173  Sum_probs=104.4

Q ss_pred             cccCCCCcEEEEcCcHHHHHHHHH--cCCeEEeCCCCCCCc---hHHHHHHHHHhcC-CCCEEEEecCCCCCCCHHHHHH
Q 027992            5 CHSFLFCGLVVATDDEKIAECCQQ--FGADVIMTSESCRNG---TERCNEALQKLEK-KYDIVVNIQGDEPLIEPEIIDG   78 (215)
Q Consensus         5 ~~~~~~d~ivV~td~~~i~~~~~~--~g~~v~~~~~~~~~~---~~~i~~~l~~~~~-~~d~v~~~~~d~Pli~~~~i~~   78 (215)
                      .+++.+++|+|+|+++....+.+.  ++..+..    ..+|   ..++++|+..+.. +.|.+++++||+||+++++|++
T Consensus        52 ~~~~~~~~ivVv~~~~~~~~~~~~~~~~~~~~~----~~gg~~~~~sv~~al~~~~~~~~~~vlv~~~D~Pli~~~~i~~  127 (234)
T 1vpa_A           52 LKSEAIDGVVIVTRREWFEVVEKRVFHEKVLGI----VEGGDTRSQSVRSALEFLEKFSPSYVLVHDSARPFLRKKHVSE  127 (234)
T ss_dssp             HHCTTCSEEEEEECGGGHHHHHTTCCCTTEEEE----EECCSSHHHHHHHHHHHHGGGCCSEEEEEETTSCCCCHHHHHH
T ss_pred             HcCCCCCeEEEEEChHHHHHHHHHhccCCceEE----eCCCCcHHHHHHHHHHHhhhcCCCEEEEecCcccCCCHHHHHH
Confidence            345568999999987654322221  1222211    1122   2468889888743 4689999999999999999999


Q ss_pred             HHHHHHcCCCceEEeecccCCCCccCCCCceEEEEcCCCceecccCCCCCCCCCCCCCCCCCeeEEeeeeeechHHHhhC
Q 027992           79 VVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIY  158 (215)
Q Consensus        79 ~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ip~~~~~~~~q~~p~~~~~~~~~~~~~~l~~~  158 (215)
                      +++.+..+ ++.+++  .+..       ++++.+ +++| + .+     + .++       ..+...++++|+...+.+.
T Consensus       128 l~~~~~~~-~~~i~~--~~~~-------~~~~~~-~~~g-v-~~-----~-~r~-------~~~~~~~p~~f~~~~l~~~  181 (234)
T 1vpa_A          128 VLRRARET-GAATLA--LKNS-------DALVRV-ENDR-I-EY-----I-PRK-------GVYRILTPQAFSYEILKKA  181 (234)
T ss_dssp             HHHHHHHH-SEEEEE--EECC-------SEEEEE-ETTE-E-EE-----E-CCT-------TEEEEEEEEEEEHHHHHHH
T ss_pred             HHHHHHhc-CCEEEE--EecC-------CcEEEE-CCCC-c-cc-----C-Chh-------HeeeecCCccccHHHHHHH
Confidence            99988653 444432  2332       344444 4455 2 11     1 111       1233456788887665543


Q ss_pred             cCCCCCCCCCccchhhhhhhh-cCCeeEEEEecCCCCCCCCHHHHHHHHHHHHhhc
Q 027992          159 PGLHPTPLQLEEDLEQLKVLE-NGYKMKVIKVDHEAHGVDAPEDVEKIESFMRERN  213 (215)
Q Consensus       159 ~~~~~~~~~~~e~l~~~~~~~-~g~~v~~~~~~~~~idIdt~~Dl~~ae~il~~~~  213 (215)
                      ....  . ..   .+...++. .|.++..++.+..++|||||+||+.|+.+++.++
T Consensus       182 ~~~~--~-~~---~~~~~~~~~~g~~v~~v~~~~~~~dIdtpeDl~~a~~~l~~~~  231 (234)
T 1vpa_A          182 HENG--G-EW---ADDTEPVQKLGVKIALVEGDPLCFKVTFKEDLELARIIAREWE  231 (234)
T ss_dssp             HTTC--C-CC---SSSHHHHHTTTCCCEEEECCGGGCCCCSTTHHHHHHHHHHHHC
T ss_pred             HHhc--C-CC---CcHHHHHHHcCCcEEEEECCchhcCCCCHHHHHHHHHHHhccc
Confidence            2211  0 00   01112232 5778887776667999999999999999998764

>2xwl_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; transferase, MEP pathway; HET: CTP; 1.49A {Mycobacterium smegmatis} PDB: 2xwm_A*

Probab=99.41  E-value=2.5e-11  Score=94.96  Aligned_cols=175  Identities=20%  Similarity=0.244  Sum_probs=106.1

Q ss_pred             ccCCCCcEEEEcCcHHHHHHHHHc-CCeE-EeCCCCCCCchHHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHHH
Q 027992            6 HSFLFCGLVVATDDEKIAECCQQF-GADV-IMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKAL   83 (215)
Q Consensus         6 ~~~~~d~ivV~td~~~i~~~~~~~-g~~v-~~~~~~~~~~~~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~~   83 (215)
                      +++.+++|+|+|+++....+.+.. +..+ +....  .+...++..|+..+ .+.|.+++++||+||+++++|+++++.+
T Consensus        42 ~~~~~~~i~vv~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~i~~al~~~-~~~~~vlv~~~D~P~~~~~~i~~l~~~~  118 (223)
T 2xwl_A           42 ASGVIDRIVIAVPPALTDESKLVFGGEDSVIVSGG--VDRTESVALALEAA-GDAEFVLVHDAARALTPPALIARVVAAL  118 (223)
T ss_dssp             HHSCCSEEEEEECGGGHHHHHHHTCBTTEEEEECC--SSHHHHHHHHHTTC-TTCSEEEECCTTCTTCCHHHHHHHHHHH
T ss_pred             cCCCCCeEEEEEcccHHHHHHHHhccCCeEEEcCC--CCHHHHHHHHHHhc-CCCCEEEEEcCCcccCCHHHHHHHHHHH
Confidence            345589999999876543333332 2233 22221  24456788888877 2568999999999999999999999988


Q ss_pred             -HcCCCceEEeecccCCCCccCCCCceEEEEcCCCceecccCCCCCCCCCCCCCCCCCeeEEeeeeeechHHHhhCcCCC
Q 027992           84 -QAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLH  162 (215)
Q Consensus        84 -~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ip~~~~~~~~q~~p~~~~~~~~~~~~~~l~~~~~~~  162 (215)
                       .. .++.+++  .+..       ++++.+ +++|.+..+.      .+     .  +.....+.++|....+.......
T Consensus       119 ~~~-~~~~i~~--~~~~-------d~~~~~-~~~g~~~~~~------e~-----~--~l~~~~~p~~f~~~~l~~~~~~~  174 (223)
T 2xwl_A          119 KEG-HSAVVPG--LAPA-------DTIKAV-DANGAVLGTP------ER-----A--GLRAVQTPQGFHADVLRRAYARA  174 (223)
T ss_dssp             HHT-CSEEEEE--ECCS-------SCEEEE-CTTSBEEECC------CG-----G--GEEEECSCEEEEHHHHHHHHTTC
T ss_pred             hhc-CCeEEEE--Eecc-------cceEEE-cCCCcEEeec------Ch-----H--HheeeeCCcccCHHHHHHHHHHh
Confidence             44 3555442  3332       344444 5566543211      11     0  12223446778765543321110


Q ss_pred             CCCCCCccch-hhhhhhh-cCCeeEEEEecCCCCCCCCHHHHHHHHHHHHhh
Q 027992          163 PTPLQLEEDL-EQLKVLE-NGYKMKVIKVDHEAHGVDAPEDVEKIESFMRER  212 (215)
Q Consensus       163 ~~~~~~~e~l-~~~~~~~-~g~~v~~~~~~~~~idIdt~~Dl~~ae~il~~~  212 (215)
                      . .    .++ +...++. .|.++..++.+...+|||||+||..|+.+++.+
T Consensus       175 ~-~----~~~~~~~~~~~~~~~~v~~~~~~~~~~dIdtpeDl~~a~~~l~~~  221 (223)
T 2xwl_A          175 T-A----GGVTDDASLVEQLGTPVQIVDGDPLAFKITTPLDLVLAEAVLAHH  221 (223)
T ss_dssp             C-S----CCCCCHHHHHHTTTCCCEEEECCGGGCCCCSHHHHHHHHHHHHHT
T ss_pred             h-C----CCCccHHHHHHHcCCCEEEEECCcccccccCHHHHHHHHHHHhhc
Confidence            0 0    011 1122332 577888888777889999999999999998765

>4fce_A Bifunctional protein GLMU; GLMU. csgid, niaid, structural genomics, national institute allergy and infectious diseases; HET: GP1; 1.96A {Yersinia pseudotuberculosis} PDB: 3fww_A 1hv9_A* 2oi5_A* 2oi6_A* 2oi7_A* 1fxj_A* 1fwy_A*

Probab=99.40  E-value=4.6e-12  Score=109.52  Aligned_cols=186  Identities=15%  Similarity=0.173  Sum_probs=113.2

Q ss_pred             CCCcEEEEc--CcHHHHHHHHHcCCeEEeCCCCCCCch-HHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHHHHc
Q 027992            9 LFCGLVVAT--DDEKIAECCQQFGADVIMTSESCRNGT-ERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA   85 (215)
Q Consensus         9 ~~d~ivV~t--d~~~i~~~~~~~g~~v~~~~~~~~~~~-~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~~~~   85 (215)
                      .+++|+|+|  +.+++.+.+..+++.++..+..  .|+ .+++.|+..+. +.|.+++++||+||+++++++++++.+.+
T Consensus        50 ~~~~i~vv~~~~~~~i~~~~~~~~~~~v~~~~~--~g~~~~i~~~~~~~~-~~~~~lv~~~D~P~i~~~~i~~l~~~~~~  126 (459)
T 4fce_A           50 GAQHVHLVYGHGGELLKKTLADPSLNWVLQAEQ--LGTGHAMQQAAPHFA-DDEDILMLYGDVPLISVDTLQRLLAAKPE  126 (459)
T ss_dssp             TCSCEEEEESSCHHHHHHHC-----CEEECSSC--CCHHHHHHHHGGGSC-TTSEEEEEETTCTTCCHHHHHHHHHHCCT
T ss_pred             CCCcEEEEeCCCHHHHHHHhccCCcEEEeCCCC--CCcHHHHHHHHHhcC-CCCcEEEEeCCcccCCHHHHHHHHHHHhh
Confidence            389999999  4577877777777777654322  344 57888888874 46899999999999999999999998754


Q ss_pred             CCCceEEeecccCCCCccCCCC-ceEEEEcCCCceecccCCCCCCCCCCCCCCCCCeeEEeeeeeechHHHhhC-cCCCC
Q 027992           86 APDAVFSTAVTSLKPEDAFDPN-RVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIY-PGLHP  163 (215)
Q Consensus        86 ~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~ip~~~~~~~~q~~p~~~~~~~~~~~~~~l~~~-~~~~~  163 (215)
                       .+..+..  .+..     +|. ..++..+ +|.+..+.+.+.+     ...+......+.+.|+|+...+..+ ..+..
T Consensus       127 -~~~~~~~--~~~~-----~~~~~g~v~~~-~g~v~~~~ek~~~-----~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~  192 (459)
T 4fce_A          127 -GGIGLLT--VKLD-----NPSGYGRIVRE-NGDVVGIVEHKDA-----SDAQREINEINTGILVANGRDLKRWLSLLDN  192 (459)
T ss_dssp             -TSEEEEE--EECS-----CCTTSCEEEEE-TTEEEEEECGGGC-----CTTGGGCCEEEEEEEEEEHHHHHHHHHTCCC
T ss_pred             -CCEEEEE--EecC-----CCCcccEEEeC-CCcEEEEEECCCC-----ChHHhhccEEEEEEEEEEHHHHHHHHHHhCc
Confidence             3444332  3332     111 2233333 5666544322110     0112222456778899988765432 22111


Q ss_pred             CCCCCcc-ch-hhhh-hhhcCCeeEEEEec--CCCCCCCCHHHHHHHHHHHHhh
Q 027992          164 TPLQLEE-DL-EQLK-VLENGYKMKVIKVD--HEAHGVDAPEDVEKIESFMRER  212 (215)
Q Consensus       164 ~~~~~~e-~l-~~~~-~~~~g~~v~~~~~~--~~~idIdt~~Dl~~ae~il~~~  212 (215)
                      .. ...+ ++ +... +...|.++..++.+  ..+++|||++||..|+.+++.+
T Consensus       193 ~~-~~~~~~~~d~~~~~~~~g~~v~~~~~~~~~~~~~I~tp~Dl~~ae~~l~~~  245 (459)
T 4fce_A          193 NN-AQGEFYITDIIALAHADGKKIATVHPTRLSEVEGVNNRLQLSALERVFQTE  245 (459)
T ss_dssp             CS-TTCSCCTTHHHHHHHHTTCCEEEECCSSGGGGCCCSSHHHHHHHHHHHHHH
T ss_pred             cc-cCCcEEHHHHHHHHHHCCCeEEEEEcCCHHHhhCCCCHHHHHHHHHHHHHH
Confidence            10 1111 12 2223 33368899998876  6889999999999999998753

>1vgw_A 4-diphosphocytidyl-2C-methyl-D-erythritol synthas; structural genomics, transferase; 2.35A {Neisseria gonorrhoeae} SCOP: c.68.1.13 PDB: 1vgz_A

Probab=99.39  E-value=1.6e-11  Score=96.75  Aligned_cols=173  Identities=12%  Similarity=0.098  Sum_probs=104.3

Q ss_pred             ccCCCCcEEEEc--CcHHHHHHHHHcCC-eE-EeCCCCCCCchHHHHHHHHHhcC-----CCCEEEEecCCCCCCCHHHH
Q 027992            6 HSFLFCGLVVAT--DDEKIAECCQQFGA-DV-IMTSESCRNGTERCNEALQKLEK-----KYDIVVNIQGDEPLIEPEII   76 (215)
Q Consensus         6 ~~~~~d~ivV~t--d~~~i~~~~~~~g~-~v-~~~~~~~~~~~~~i~~~l~~~~~-----~~d~v~~~~~d~Pli~~~~i   76 (215)
                      +++.+++|+|+|  +++.+.+ +.++|. .+ +..+ . .+...+++.|+..+..     ..|.+++++||+||+++++|
T Consensus        46 ~~~~~~~ivvv~~~~~~~~~~-~~~~~~~~i~~~~~-~-~~~~~si~~~l~~~~~~~~~~~~~~vlv~~~D~p~~~~~~i  122 (231)
T 1vgw_A           46 RHEAVDLTVVVVSPEDTFADK-VQTAFPQVRVWKNG-G-QTRAETVRNGVAKLLETGLAAETDNILVHDAARCCLPSEAL  122 (231)
T ss_dssp             TCTTCCEEEEECCTTCSTHHH-HHHHCTTSEEECCC-C-SSHHHHHHHHHHHHHHHSSSCTTSEEEECCTTCTTCCHHHH
T ss_pred             cCCCCCeEEEEECccHHHHHH-HHhcCCCceEEEcC-C-CcHHHHHHHHHHHHhhhccCCCCCEEEEEcCCcccCCHHHH
Confidence            445689999999  3456766 555553 22 2222 2 1334468888877632     46899999999999999999


Q ss_pred             HHHHHHHHcCCCceEEeecccCCCCccCCCCceEEEEcCCCceecccCCCCCCCCCCCCCCCCCeeEEeeeeeechHHHh
Q 027992           77 DGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLK  156 (215)
Q Consensus        77 ~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ip~~~~~~~~q~~p~~~~~~~~~~~~~~l~  156 (215)
                      +++++.+.++.++.+.+  .+..       ++++..  ++|.+.   + . + .+     .  ......+.++|+...+.
T Consensus       123 ~~l~~~~~~~~~~~~~~--~~~~-------~~~~~~--~~g~i~---~-~-~-~~-----~--~~~~~~~p~~f~~~~l~  178 (231)
T 1vgw_A          123 ARLIEQAGNAAEGGILA--VPVA-------DTLKRA--ESGQIS---A-T-V-DR-----S--GLWQAQTPQLFQAGLLH  178 (231)
T ss_dssp             HHHHHHHTTCTTCEEEE--EECC-------SCEEEE--SSSBEE---E-E-E-CC-----T--TEEEEEEEEEEEHHHHH
T ss_pred             HHHHHHHhhcCCeEEEE--eecc-------cceEEe--CCCceE---e-c-C-Ch-----H--HheeeeCCcEecHHHHH
Confidence            99999986543333332  2332       344432  345322   1 1 1 11     1  13445568889876554


Q ss_pred             hC-cCCCCCCCCCccchhhhhhhh-cCCeeEEEEecCCCCCCCCHHHHHHHHHHHH
Q 027992          157 IY-PGLHPTPLQLEEDLEQLKVLE-NGYKMKVIKVDHEAHGVDAPEDVEKIESFMR  210 (215)
Q Consensus       157 ~~-~~~~~~~~~~~e~l~~~~~~~-~g~~v~~~~~~~~~idIdt~~Dl~~ae~il~  210 (215)
                      .. ........     .+...++. .|.++..++.+...+|||||+||..|+.+++
T Consensus       179 ~~~~~~~~~g~-----~~~~~~~~~~~~~v~~v~~~~~~~dIdtpeDl~~a~~~l~  229 (231)
T 1vgw_A          179 RALAAENLGGI-----TDEASAVEKLGVRPLLIQGDARNLKLTQPQDAYIVRLLLD  229 (231)
T ss_dssp             HHHHC----CC-----CSHHHHHHTTTCCCEEEECCTTCCCCCSHHHHHHHHHHCC
T ss_pred             HHHHHHhhcCC-----CcHHHHHHHcCCCEEEEECCccccCcCCHHHHHHHHHHHh
Confidence            42 21110000     01122222 4778888887778999999999999998864

>2vsh_A TARI, 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; nucleotidyltransferase; HET: 1PE PG4 P6G; 2.00A {Streptococcus pneumoniae} PDB: 2vsi_A*

Probab=99.32  E-value=6.5e-11  Score=93.33  Aligned_cols=176  Identities=16%  Similarity=0.221  Sum_probs=105.6

Q ss_pred             ccCCCCcEEEEcCcHH---HHHHHHHcCCeE----EeCCCCCCCchHHHHHHHHHhc---C--CCCEEEEecCCCCCCCH
Q 027992            6 HSFLFCGLVVATDDEK---IAECCQQFGADV----IMTSESCRNGTERCNEALQKLE---K--KYDIVVNIQGDEPLIEP   73 (215)
Q Consensus         6 ~~~~~d~ivV~td~~~---i~~~~~~~g~~v----~~~~~~~~~~~~~i~~~l~~~~---~--~~d~v~~~~~d~Pli~~   73 (215)
                      +++.+++|+|+|+++.   +.++++++|+.+    ...+ .-.+...++++|+..+.   .  +.|.+++++||+||+++
T Consensus        43 ~~~~~~~i~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~vlv~~~D~P~~~~  121 (236)
T 2vsh_A           43 LEPSIEKIVVGVHGDWVSHAEDLVDKYLPLYKERIIITK-GGADRNTSIKNIIEAIDAYRPLTPEDIVVTHDSVRPFITL  121 (236)
T ss_dssp             TCTTCCCEEEEECGGGHHHHHHHHHHHCGGGGGGEEEEE-CCSSHHHHHHHHHHHHHHHSCCCTTCEEEEEETTCTTCCH
T ss_pred             cCCCCCeEEEEeCHHHHHHHHHHHHhccccccCceEEEC-CCCchHHHHHHHHHHHHhhccCCCCCEEEEecCCcccCCH
Confidence            4456899999997654   777777777321    1111 11123457888888773   2  45899999999999999


Q ss_pred             HHHHHHHHHHHcCCCceEEeecccCCCCccCCCCceEEEEcCCC-ceecccCCCCCCCCCCCCCCCCCeeEEeeeeeech
Q 027992           74 EIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHG-YAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDS  152 (215)
Q Consensus        74 ~~i~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~ip~~~~~~~~q~~p~~~~~~~~~~~~  152 (215)
                      ++|+++++.+.++ ++.+.+  .+..       ++++.  .++| .+..+     . .+     .  +.....+.++|+.
T Consensus       122 ~~i~~l~~~~~~~-~~~~~~--~~~~-------~~~~~--~~~g~~~~~~-----~-~~-----~--~~~~~~~p~~f~~  176 (236)
T 2vsh_A          122 RMIQDNIQLAQNH-DAVDTV--VEAV-------DTIVE--STNGQFITDI-----P-NR-----A--HLYQGQTPQTFRC  176 (236)
T ss_dssp             HHHHHHHHHHHHS-SEEEEE--EECC-------SCEEE--CSSSSBCCBC-----C-CG-----G--GEEEEEEEEEEEH
T ss_pred             HHHHHHHHHHHhc-CcEEEE--Eecc-------ccEEE--eCCCCeeeee-----c-Ch-----H--HheeecCCcEecH
Confidence            9999999998754 332322  3432       34443  2455 43211     1 11     1  1222244788877


Q ss_pred             HHHhh-CcCCCCCCCCCccc-h-hhhhhh-hcCCeeEEEEecCCCCCCCCHHHHHHHHHHHHh
Q 027992          153 NFLKI-YPGLHPTPLQLEED-L-EQLKVL-ENGYKMKVIKVDHEAHGVDAPEDVEKIESFMRE  211 (215)
Q Consensus       153 ~~l~~-~~~~~~~~~~~~e~-l-~~~~~~-~~g~~v~~~~~~~~~idIdt~~Dl~~ae~il~~  211 (215)
                      ..+.. +....    ....+ + +...++ ..|.++..++.+...+|||||+||..|+.++++
T Consensus       177 ~~l~~~~~~~~----~~g~~~~~~~~~~l~~~~~~v~~~~~~~~~~dIdtpeDl~~a~~~~~~  235 (236)
T 2vsh_A          177 KDFMDLYGSLS----DEEKEILTDACKIFVIKGKDVALAKGEYSNLKITTVTDLKIAKSMIEK  235 (236)
T ss_dssp             HHHHHHHHTCC----HHHHHHCCSHHHHHHHTTCCEEEEECCTTCCCCCSHHHHHHHHHHTC-
T ss_pred             HHHHHHHHHHH----hcCCCcCCCHHHHHHHcCCCEEEEECCccccCcCCHHHHHHHHHHhhc
Confidence            65443 22110    00001 1 111222 257788888877789999999999999998753

>1hm9_A GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltransfe; acetyltransferase, bifunctional, drug design; HET: ACO UD1; 1.75A {Streptococcus pneumoniae} SCOP: b.81.1.4 c.68.1.5 PDB: 1hm8_A* 1hm0_A* 4ac3_A* 4aaw_A* 1g97_A* 1g95_A*

Probab=99.31  E-value=1.5e-10  Score=100.30  Aligned_cols=187  Identities=18%  Similarity=0.152  Sum_probs=113.7

Q ss_pred             CCCcEEEEcCc--HHHHHHHHHcCCeEEeCCCCCCCch-HHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHHHHc
Q 027992            9 LFCGLVVATDD--EKIAECCQQFGADVIMTSESCRNGT-ERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA   85 (215)
Q Consensus         9 ~~d~ivV~td~--~~i~~~~~~~g~~v~~~~~~~~~~~-~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~~~~   85 (215)
                      .+++|+|+|..  +++.+.+.+ ++.++..+ . ..|+ .+++.|+..+....|.+++++||+||+++++++++++.+++
T Consensus        53 g~~~iivv~~~~~~~i~~~~~~-~i~~v~~~-~-~~G~~~sl~~a~~~~~~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~  129 (468)
T 1hm9_A           53 QPEKTVTVVGHKAELVEEVLAG-QTEFVTQS-E-QLGTGHAVMMTEPILEGLSGHTLVIAGDTPLITGESLKNLIDFHIN  129 (468)
T ss_dssp             CCSEEEEEECTTHHHHHHSSSS-SSEEEECS-S-CCCHHHHHHTTHHHHTTCCSEEEEEETTCTTCCHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCHHHHHHHhCC-CcEEEeCC-c-cCChHHHHHHHHHHhccCCCeEEEEeCCccccCHHHHHHHHHHHHh
Confidence            58999999954  555544433 56665433 3 2344 46788888874336899999999999999999999999865


Q ss_pred             CCCceEEeecccCCCCccCCCCc-eEEEEcCCCceecccCCCCCCCCCCCCCCCC--CeeEEeeeeeechHHHhh-CcCC
Q 027992           86 APDAVFSTAVTSLKPEDAFDPNR-VKCVVDNHGYAIYFSRGLIPYNKSGKVNPQF--PYLLHLGIQSYDSNFLKI-YPGL  161 (215)
Q Consensus        86 ~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~ip~~~~~~~~q~~--p~~~~~~~~~~~~~~l~~-~~~~  161 (215)
                      . ++.+++...+..     +|.. -++..+++|.+..|.+.+.       .++..  ....+.+.|+|+.+.+.+ +..+
T Consensus       130 ~-~~~~~i~~~~~~-----~~~~~g~v~~d~~g~v~~~~ek~~-------~~~~~~~~~~~~~Giy~f~~~~l~~~l~~~  196 (468)
T 1hm9_A          130 H-KNVATILTAETD-----NPFGYGRIVRNDNAEVLRIVEQKD-------ATDFEKQIKEINTGTYVFDNERLFEALKNI  196 (468)
T ss_dssp             T-TCSEEEEEEECS-----CCTTSCEEEECTTCCEEEEECTTT-------CCTTGGGCCEEEEEEEEEEHHHHHHHHTTC
T ss_pred             c-CCcEEEEEeccC-----CCCceeEEEECCCCCEEEEEECCC-------CChHHhcCeEEEEEEEEEEHHHHHHHHHhh
Confidence            3 233333333432     1222 2333466677665543211       11221  246678889998875543 2332


Q ss_pred             CCCCCCCccch-hhhh-hhhcCCeeEEEEec--CCCCCCCCHHHHHHHHHHHHh
Q 027992          162 HPTPLQLEEDL-EQLK-VLENGYKMKVIKVD--HEAHGVDAPEDVEKIESFMRE  211 (215)
Q Consensus       162 ~~~~~~~~e~l-~~~~-~~~~g~~v~~~~~~--~~~idIdt~~Dl~~ae~il~~  211 (215)
                      .........++ +... +++.|.++..++.+  +..++|||++||..|+.++..
T Consensus       197 ~~~~~~~~~~~~d~~~~l~~~g~~v~~~~~~g~~~~i~i~t~~dl~~a~~~~~~  250 (468)
T 1hm9_A          197 NTNNAQGEYYITDVIGIFRETGEKVGAYTLKDFDESLGVNDRVALATAESVMRR  250 (468)
T ss_dssp             CSCSTTCSCCTTHHHHHHHHHTCCEEEEECSSGGGGCCCCSHHHHHHHHHHHHH
T ss_pred             ccccCCCeEEHHHHHHHHHHCCCEEEEEEcCChHHhhCCCCHHHHHHHHHHHHH
Confidence            21110001111 2222 33468889888764  578999999999999988754

>2waw_A MOBA relate protein; unknown function; HET: PGE; 1.60A {Mycobacterium SP}

Probab=99.28  E-value=2.3e-10  Score=87.75  Aligned_cols=74  Identities=18%  Similarity=0.302  Sum_probs=56.5

Q ss_pred             CCCcEEEEcCc--HHHHHHHHHcCCeEEeCCCCCCCchHHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHH
Q 027992            9 LFCGLVVATDD--EKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKA   82 (215)
Q Consensus         9 ~~d~ivV~td~--~~i~~~~~~~g~~v~~~~~~~~~~~~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~   82 (215)
                      .+++|+|+|+.  +++.+.+..+|+.++..+....+...+++.|+..+..+.|.++++.||+||+++++|+++++.
T Consensus        45 ~~~~i~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~i~~al~~~~~~~~~vlv~~~D~P~~~~~~i~~l~~~  120 (199)
T 2waw_A           45 PFDQLIVTLGGAADEVLEKVELDGLDIVLVDDAGLGCSSSLKSALTWVDPTAEGIVLMLGDQPGITASAVASLIAG  120 (199)
T ss_dssp             SCSEEEEEECTTHHHHHHHSCCTTSEEEECCCCCTTCCCHHHHHHHTSCTTCSEEEEEETTCTTCCHHHHHHHHHH
T ss_pred             CCCcEEEEeCCCHHHHHHHhccCCCEEEECCCcccCHHHHHHHHHHhhhccCCeEEEEeCCcccCCHHHHHHHHhh
Confidence            38999999964  567777766788876543222222457889988874356899999999999999999999998

>1i52_A 4-diphosphocytidyl-2-C-methylerythritol synthase; cytidylyltransferase, deoxyxylulose-5-phosphate pathway (DXP isoprenoid biosynthesys, MEP; HET: CTP; 1.50A {Escherichia coli} SCOP: c.68.1.13 PDB: 1ini_A* 1inj_A 1vgt_A 1vgu_A 3n9w_A 1h3m_A

Probab=99.26  E-value=4.4e-11  Score=94.62  Aligned_cols=177  Identities=10%  Similarity=0.142  Sum_probs=103.8

Q ss_pred             ccCCCCcEEEEcCc--HHHHHHHHHcCC-eE-EeCCCCCCCchHHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHH
Q 027992            6 HSFLFCGLVVATDD--EKIAECCQQFGA-DV-IMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVK   81 (215)
Q Consensus         6 ~~~~~d~ivV~td~--~~i~~~~~~~g~-~v-~~~~~~~~~~~~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~   81 (215)
                      +++.+++|+|+|+.  +++.+ +..+|. .+ +..+.  .+-..+++.|+..+. +.|.+++++||+||++++.|+++++
T Consensus        47 ~~~~~~~ivvv~~~~~~~~~~-~~~~~~~~v~~~~~~--~g~~~~i~~al~~~~-~~~~~lv~~~D~P~~~~~~i~~l~~  122 (236)
T 1i52_A           47 AHPRVKRVVIAISPGDSRFAQ-LPLANHPQITVVDGG--DERADSVLAGLKAAG-DAQWVLVHDAARPCLHQDDLARLLA  122 (236)
T ss_dssp             TSTTEEEEEEEECTTCCSGGG-SGGGGCTTEEEEECC--SSHHHHHHHHHHTST-TCSEEEECCTTCTTCCHHHHHHHHG
T ss_pred             hCCCCCeEEEEeCccHHHHHH-HHhcCCCCEEEECCC--CCHHHHHHHHHHhcC-CCCEEEEEcCccccCCHHHHHHHHH
Confidence            34568999999963  45555 455543 23 33332  133457888888773 4689999999999999999999999


Q ss_pred             HHHcCCCceEEeecccCCCCccCCCCceEEEEcCC-CceecccCCCCCCCCCCCCCCCCCeeEEeeeeeechHHHhh-Cc
Q 027992           82 ALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNH-GYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKI-YP  159 (215)
Q Consensus        82 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~ip~~~~~~~~q~~p~~~~~~~~~~~~~~l~~-~~  159 (215)
                      .+.++....+++  .+..       ++++.+ +++ |...   + .+  .+.       ..+...++++|+...+.. +.
T Consensus       123 ~~~~~~~~~~~~--~~~~-------~~~~~~-~~~~~~i~---~-~~--~~~-------~i~~~~~p~~f~~~~l~~~~~  179 (236)
T 1i52_A          123 LSETSRTGGILA--APVR-------DTMKRA-EPGKNAIA---H-TV--DRN-------GLWHALTPQFFPRELLHDCLT  179 (236)
T ss_dssp             GGGTCSSCEEEE--EECC-------SCEEEE-CTTSSSEE---E-EE--CCT-------TCEEEEEEEEEEHHHHHHHHH
T ss_pred             HHHhcCCeEEEE--Eecc-------ccEEEE-cCCCCcee---e-cc--ChH-------hheeeeCCceecHHHHHHHHH
Confidence            876543123332  2332       344444 333 3321   1 11  111       122334778887654432 11


Q ss_pred             CCCCCCCCCccchhhhhhhh-cCCeeEEEEecCCCCCCCCHHHHHHHHHHHHhh
Q 027992          160 GLHPTPLQLEEDLEQLKVLE-NGYKMKVIKVDHEAHGVDAPEDVEKIESFMRER  212 (215)
Q Consensus       160 ~~~~~~~~~~e~l~~~~~~~-~g~~v~~~~~~~~~idIdt~~Dl~~ae~il~~~  212 (215)
                      ........   ..+...++. .|.++..++.+...+|||||+||..|+.+++.+
T Consensus       180 ~~~~~g~~---~td~~~~~~~~~~~v~~v~~~~~~~dIdtpeDl~~a~~~~~~~  230 (236)
T 1i52_A          180 RALNEGAT---ITDEASALEYCGFHPQLVEGRADNIKVTRPEDLALAEFYLTRT  230 (236)
T ss_dssp             HHHHTTCC---CCSHHHHHHHTTCCCEEEECCTTCCCCCSHHHHHHHHHHHCC-
T ss_pred             HHHhcCCC---cccHHHHHHHcCCCEEEEecCccccccCCHHHHHHHHHHHHHh
Confidence            10000000   011123332 577888888877899999999999999998654

>2px7_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; TTHA0171, ISPD_THET8, ISPD, structural genomics PSI; 2.20A {Thermus thermophilus HB8}

Probab=99.23  E-value=3.2e-10  Score=89.89  Aligned_cols=172  Identities=13%  Similarity=0.143  Sum_probs=102.7

Q ss_pred             cCCCCcEEEEcCcHHHHHHHHHcCCeEEeCCCCCCCchHHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHHHHcC
Q 027992            7 SFLFCGLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAA   86 (215)
Q Consensus         7 ~~~~d~ivV~td~~~i~~~~~~~g~~v~~~~~~~~~~~~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~~~~~   86 (215)
                      +..+++|+|+|++ ++.+ +...++.++. .  ..+...+++.|+..+.  .|.+++++||+||++++.|+++++.+.+.
T Consensus        62 ~~~~~~ivvv~~~-~~~~-~~~~~v~~~~-~--~~~~~~~i~~al~~~~--~~~vlv~~~D~P~~~~~~i~~l~~~~~~~  134 (236)
T 2px7_A           62 FRDAAEVLVALPP-GAEP-PKGLGAVFLE-G--GATRQASVARLLEAAS--LPLVLVHDVARPFVSRGLVARVLEAAQRS  134 (236)
T ss_dssp             TTTCSEEEEEECT-TCCC-CTTCSCEEEE-C--CSSHHHHHHHHHHHCC--SSEEEECCTTCCCCCHHHHHHHHHHHHHH
T ss_pred             cCCCCeEEEEeCH-HHHH-hhcCCcEEEe-C--CCchHHHHHHHHHHcC--CCeEEEecCccccCCHHHHHHHHHHHHhc
Confidence            4568999999986 4444 3334555442 1  1233457888988873  68999999999999999999999988653


Q ss_pred             CCceEEeecccCCCCccCCCCceEEEEcCCCceecccCCCCCCCCCCCCCCCCCeeEEeeeeeechHHHhhC-cCCCCCC
Q 027992           87 PDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIY-PGLHPTP  165 (215)
Q Consensus        87 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ip~~~~~~~~q~~p~~~~~~~~~~~~~~l~~~-~~~~~~~  165 (215)
                       ++.+++  .+..       +++++. + +|.+..+     + .++       +.....++++|+...+.+. .......
T Consensus       135 -~~~i~~--~~~~-------~~~~~~-~-~G~v~~~-----~-~~~-------~~~~~~~~~~f~~~~l~~~~~~~~~~g  189 (236)
T 2px7_A          135 -GAAVPV--LPVP-------DTLMAP-E-GEAYGRV-----V-PRE-------AFRLVQTPQGFFTALLREAHAYARRKG  189 (236)
T ss_dssp             -SEEEEE--EECC-------SEEEEE-C-SSSCEEE-----E-CGG-------GCEEECSCEEEEHHHHHHHHHHHHHHT
T ss_pred             -CCeEEE--EecC-------CcEEEe-c-CCeEEec-----C-ChH-------hhccccCCeEEcHHHHHHHHHHHHhcC
Confidence             444443  2332       344443 3 5543211     1 110       1223335677776544321 1000000


Q ss_pred             CCCccchhhhhhhh-cCCeeEEEEecCCCCCCCCHHHHHHHHHHHHhhc
Q 027992          166 LQLEEDLEQLKVLE-NGYKMKVIKVDHEAHGVDAPEDVEKIESFMRERN  213 (215)
Q Consensus       166 ~~~~e~l~~~~~~~-~g~~v~~~~~~~~~idIdt~~Dl~~ae~il~~~~  213 (215)
                      ...   .+...++. .|.++..++.+...+|||||+||+.|+.+++.++
T Consensus       190 ~~~---~d~~~ll~~~~~~v~~v~~~~~~~dIdtpeDl~~a~~~l~~~~  235 (236)
T 2px7_A          190 LEA---SDDAQLVQALGYPVALVEGEATAFKITHPQDLVLAEALARVWS  235 (236)
T ss_dssp             CCC---SSHHHHHHHTTCCCEEEECCTTCCCCCSHHHHHHHHHHHTC--
T ss_pred             CCc---hhHHHHHHHcCCcEEEEECCccccCCCCHHHHHHHHHHHHhcc
Confidence            000   11122332 5778888887778999999999999999997653

>2v0h_A Bifunctional protein GLMU; cell WALL, magnesium, cell shape, transferase, peptidoglycan synthesis, associative mechanism; 1.79A {Haemophilus influenzae} PDB: 2v0i_A* 2v0j_A* 2v0k_A* 2v0l_A* 2vd4_A* 2w0v_A* 2w0w_A* 3twd_A*

Probab=99.22  E-value=4.8e-10  Score=96.76  Aligned_cols=185  Identities=12%  Similarity=0.170  Sum_probs=112.2

Q ss_pred             CCCcEEEEcCc--HHHHHHHHHcCCeEEeCCCCCCCchHHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHHHHcC
Q 027992            9 LFCGLVVATDD--EKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAA   86 (215)
Q Consensus         9 ~~d~ivV~td~--~~i~~~~~~~g~~v~~~~~~~~~~~~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~~~~~   86 (215)
                      .+++|+|+|+.  +++.+.+.++++.++..+ ...+...++++++..+. ..|.+++++||+||+++++++++++.+.+ 
T Consensus        47 ~~~~iivv~~~~~~~i~~~~~~~~~~~v~~~-~~~g~~~~~~~~~~~~~-~~~~vlv~~~D~P~i~~~~i~~l~~~~~~-  123 (456)
T 2v0h_A           47 GSENIHLIYGHGGDLMRTHLANEQVNWVLQT-EQLGTAHAVQQAAPFFK-DNENIVVLYGDAPLITKETLEKLIEAKPE-  123 (456)
T ss_dssp             TCSCEEEEECTTHHHHHHHTTTCCCEEEECS-CCCCHHHHHHHHGGGCC-TTSEEEEEETTCTTCCHHHHHHHHHHCCT-
T ss_pred             CCCcEEEEeCCCHHHHHHHhhcCCcEEEeCC-CCCCcHHHHHHHHHhcC-CCCeEEEEcCCcceeCHHHHHHHHHHHhc-
Confidence            48999999965  667676666677765443 32233457888887773 36899999999999999999999988754 


Q ss_pred             CCceEEeecccCCCCccCCCC-ceEEEEcCCCceecccCCCCCCCCCCCCCC--CCCeeEEeeeeeechHHHhh-CcCCC
Q 027992           87 PDAVFSTAVTSLKPEDAFDPN-RVKCVVDNHGYAIYFSRGLIPYNKSGKVNP--QFPYLLHLGIQSYDSNFLKI-YPGLH  162 (215)
Q Consensus        87 ~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~ip~~~~~~~~q--~~p~~~~~~~~~~~~~~l~~-~~~~~  162 (215)
                      .+..+.  ..+..     +|. ..++..+ +|.+..+.+.+       ..++  ......+.+.|+|+.+.+.+ +..+.
T Consensus       124 ~~~~~~--~~~~~-----~~~~~g~v~~~-~g~v~~~~ek~-------~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~  188 (456)
T 2v0h_A          124 NGIALL--TVNLD-----NPTGYGRIIRE-NGNVVAIVEQK-------DANAEQLNIKEVNTGVMVSDGASFKKWLARVG  188 (456)
T ss_dssp             TSEEEE--EEECS-----SCTTSCEEEEE-TTEEEEEECTT-------TCCHHHHTCCEEEEEEEEEEHHHHHHHHTTCC
T ss_pred             CCEEEE--EeecC-----CCCccceEEEc-CCcEEEEEECC-------CCChhHhcCcEEEEEEEEEEHHHHHHHHHHhc
Confidence            343333  23332     122 2233334 56654442211       0111  11245567789998875543 22221


Q ss_pred             CCCCCCccch-hhhh-hhhcCCeeEEEEec--CCCCCCCCHHHHHHHHHHHHh
Q 027992          163 PTPLQLEEDL-EQLK-VLENGYKMKVIKVD--HEAHGVDAPEDVEKIESFMRE  211 (215)
Q Consensus       163 ~~~~~~~e~l-~~~~-~~~~g~~v~~~~~~--~~~idIdt~~Dl~~ae~il~~  211 (215)
                      ........++ +... +...|.++..++.+  ...++|||++||..|+.++..
T Consensus       189 ~~~~~~~~~~~d~~~~~~~~g~~v~~~~~~~~~~~~~I~tpeDl~~a~~~l~~  241 (456)
T 2v0h_A          189 NNNAQGEYYLTDLIALANQDNCQVVAVQATDVMEVEGANNRLQLAALERYFQN  241 (456)
T ss_dssp             CCSTTCCCCGGGHHHHHHHTTCCEEEEECSCTGGGCCCSSHHHHHHHHHHHHH
T ss_pred             cccccccEEHHHHHHHHHHcCCEEEEEEeCCcceEEeCCCHHHHHHHHHHHHH
Confidence            1110001112 2222 33368888888873  468999999999999998764

>3rsb_A Adenosylcobinamide-phosphate guanylyltransferase; pyrophosphorylase binding motif, pyrophosphorylase; HET: GTP; 2.80A {Methanocaldococcus jannaschii}

Probab=99.20  E-value=1.4e-11  Score=94.65  Aligned_cols=74  Identities=23%  Similarity=0.282  Sum_probs=51.4

Q ss_pred             cccCCCCcEEEEc--CcHHHHHHHHH-c----CCeEEeCCCCCCCch-HHHHHHHHHhcCCCCEEEEecCCCCCCCHHHH
Q 027992            5 CHSFLFCGLVVAT--DDEKIAECCQQ-F----GADVIMTSESCRNGT-ERCNEALQKLEKKYDIVVNIQGDEPLIEPEII   76 (215)
Q Consensus         5 ~~~~~~d~ivV~t--d~~~i~~~~~~-~----g~~v~~~~~~~~~~~-~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i   76 (215)
                      .+++ +++|+|+|  +++++.+.+.+ +    ++.++..+ .  .|+ .++++|+..+   .|.+++++||+||+++++|
T Consensus        38 ~~~~-~~~v~vv~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~--~g~~~si~~al~~~---~~~vlv~~~D~P~i~~~~i  110 (196)
T 3rsb_A           38 LKSK-VNNIFIATSPNTPKTKEYINSAYKDYKNIVVIDTS-G--KGYIEDLNECIGYF---SEPFLVVSSDLINLKSKII  110 (196)
T ss_dssp             HSSS-CCCEEEECCTTCHHHHHHHHHHTTTTTEEEE-----------CCCCCTTTTTC---SSCEEEEETTEESCCHHHH
T ss_pred             HHCC-CCEEEEEeCCChHHHHHHHHhhccCCCCEEEEECC-C--CCcHHHHHHHHHhC---CCCEEEEeCCcccCCHHHH
Confidence            3445 89999999  56778877766 4    33333221 1  222 2466676665   5899999999999999999


Q ss_pred             HHHHHHHHc
Q 027992           77 DGVVKALQA   85 (215)
Q Consensus        77 ~~~i~~~~~   85 (215)
                      +++++.+.+
T Consensus       111 ~~l~~~~~~  119 (196)
T 3rsb_A          111 NSIVDYFYC  119 (196)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            999999964

>4ecm_A Glucose-1-phosphate thymidylyltransferase; HET: DAU; 2.30A {Bacillus anthracis} PDB: 3hl3_A*

Probab=99.17  E-value=3.6e-10  Score=91.26  Aligned_cols=180  Identities=16%  Similarity=0.203  Sum_probs=110.5

Q ss_pred             CCCCcEEEEcCc---HHHHHHHH---HcCCeE-EeCCCCCCCch-HHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHH
Q 027992            8 FLFCGLVVATDD---EKIAECCQ---QFGADV-IMTSESCRNGT-ERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGV   79 (215)
Q Consensus         8 ~~~d~ivV~td~---~~i~~~~~---~~g~~v-~~~~~~~~~~~-~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~   79 (215)
                      ..+++|+|+|..   +++.+.+.   .+|+.+ +..+.. ..|+ .+++.++..+.  .+.++++.||+|+.  .++.++
T Consensus        68 ~g~~~iivv~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~G~~~al~~a~~~~~--~~~~lv~~~D~~~~--~~l~~l  142 (269)
T 4ecm_A           68 CDITDIMIITGKEHMGDVVSFLGSGQEFGVSFTYRVQDK-AGGIAQALGLCEDFVG--NDRMVVILGDNIFS--DDIRPY  142 (269)
T ss_dssp             TTCCEEEEEECTTTHHHHHHHHTTSGGGTCEEEEEECSS-CCCHHHHHHTTHHHHT--TSEEEEEETTEEES--SCSHHH
T ss_pred             CCCCEEEEECChhhHHHHHHHHhhccccCceEEEeeCCc-cCcHHHHHHHHHHhcC--CCcEEEEeCCccCc--cCHHHH
Confidence            358999999973   55666654   356666 333323 3455 46788887773  58899999999986  789999


Q ss_pred             HHHHHc-CCCceEEeecccCCCCccCCCCce-EEEEcCCCceecccCCCCCCCCCCCCCCCCCeeEEeeeeeechHHHhh
Q 027992           80 VKALQA-APDAVFSTAVTSLKPEDAFDPNRV-KCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKI  157 (215)
Q Consensus        80 i~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~ip~~~~~~~~q~~p~~~~~~~~~~~~~~l~~  157 (215)
                      ++.+.+ +.+..++  ..+..     +|..+ .+..+ +|.+..|.+.  |.       .......+.+.|+|+.+.+..
T Consensus       143 ~~~~~~~~~~~~~~--~~~~~-----~~~~~g~v~~d-~g~v~~~~ek--p~-------~~~~~~~~~Giy~~~~~~l~~  205 (269)
T 4ecm_A          143 VEEFTNQKEGAKVL--LQSVD-----DPERFGVANIQ-NRKIIEIEEK--PK-------EPKSSYAVTGIYLYDSKVFSY  205 (269)
T ss_dssp             HHHHHTSSSSEEEE--EEECS-----CGGGSEEEEEE-TTEEEEEEES--CS-------SCSCSEEEEEEEEECTTHHHH
T ss_pred             HHHHHhcCCCeEEE--EEECC-----CCCCceEEEEc-CCEEEEEEEC--CC-------CCCCcEEEEEEEEECHHHHHh
Confidence            999864 3344444  33432     22222 22233 4666555332  10       111246678889998877654


Q ss_pred             CcCCCCCCCCCccc-h-hhhh-hhhcCCeeEEEEecCCCCCCCCHHHHHHHHHHHHhh
Q 027992          158 YPGLHPTPLQLEED-L-EQLK-VLENGYKMKVIKVDHEAHGVDAPEDVEKIESFMRER  212 (215)
Q Consensus       158 ~~~~~~~~~~~~e~-l-~~~~-~~~~g~~v~~~~~~~~~idIdt~~Dl~~ae~il~~~  212 (215)
                      +..+..+.  ..|. + +..+ +...| ++..++.+...+||+|++||..|+.++...
T Consensus       206 l~~~~~~~--~ge~~l~d~l~~l~~~g-~v~~~~~~~~~~dIgt~~dl~~a~~~l~~~  260 (269)
T 4ecm_A          206 IKELKPSA--RGELEITDINNWYLKRG-VLTYNEMSGWWTDAGTHVSLQRANALARDI  260 (269)
T ss_dssp             HTSCCBCT--TSCBCHHHHHHHHHHTT-CEEEEECCSCEEECSSHHHHHHHHHHTTTC
T ss_pred             hhhcCCCC--CCeeeHHHHHHHHHHcC-CEEEEEeCCEEEeCCCHHHHHHHHHHHHhc
Confidence            44332211  1111 1 2233 22345 677777777889999999999999998654

>2wee_A MOBA-related protein; unknown function; 1.65A {Mycobacterium tuberculosis H37RV} PDB: 2we9_A 2yes_A

Probab=99.08  E-value=1.9e-09  Score=82.51  Aligned_cols=74  Identities=18%  Similarity=0.317  Sum_probs=54.8

Q ss_pred             CCCcEEEEcCc--HHHHHHHHHcCCeEEeCCCCCCCchHHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHH
Q 027992            9 LFCGLVVATDD--EKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKA   82 (215)
Q Consensus         9 ~~d~ivV~td~--~~i~~~~~~~g~~v~~~~~~~~~~~~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~   82 (215)
                      .+++|+|+|..  +++.+.+..+|+.++..+....|-..+++.|+..+..+.|.++++.||+||+++++|+++++.
T Consensus        45 ~~~~i~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~i~~al~~~~~~~~~vlv~~~D~P~~~~~~i~~l~~~  120 (197)
T 2wee_A           45 GFDQLILTLGGAASAVRAAMALDGTDVVVVEDVERGCAASLRVALARVHPRATGIVLMLGDQPQVAPATLRRIIDV  120 (197)
T ss_dssp             TCSEEEEEECTTHHHHHHHSCCTTSEEEECC----CCHHHHHHHHTTSCTTEEEEEEEETTCTTCCHHHHHHHHHH
T ss_pred             CCCcEEEEeCCCHHHHHHHhccCCCEEEECCCcccCHHHHHHHHHHHhcccCCeEEEEeCCcCCCCHHHHHHHHhh
Confidence            38899999864  566666666788876554322233457888887763245889999999999999999999988

>1fxo_A Glucose-1-phosphate thymidylyltransferase; rhamnose, nucleotidyltransferase, pyrophosphorylase, allostery; HET: TMP; 1.66A {Pseudomonas aeruginosa} SCOP: c.68.1.6 PDB: 1fzw_A 1g0r_A* 1g1l_A* 1g23_A* 1g2v_A* 1g3l_A* 1h5r_A* 1h5s_C* 1h5t_A* 1h5s_D* 1h5s_A* 1h5r_B* 1h5s_B* 1h5t_B* 1iim_A* 1iin_A* 3pkp_A* 3pkq_A* 1mp5_A* 1mp3_A* ...

Probab=99.03  E-value=7.7e-09  Score=84.59  Aligned_cols=182  Identities=16%  Similarity=0.199  Sum_probs=106.5

Q ss_pred             CCCcEEEEc---CcHHHHHHHHH---cCCeE-EeCCCCCCCchH-HHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHH
Q 027992            9 LFCGLVVAT---DDEKIAECCQQ---FGADV-IMTSESCRNGTE-RCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVV   80 (215)
Q Consensus         9 ~~d~ivV~t---d~~~i~~~~~~---~g~~v-~~~~~~~~~~~~-~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i   80 (215)
                      .+++|+|+|   +.+.+.+.+..   +|+.+ +.+.+.. .|+. ++..|+..+.  .|.++++.||+||.+ ..+.+++
T Consensus        47 gi~~I~vv~~~~~~~~i~~~l~~g~~~g~~i~~~~~~~~-~G~~~al~~a~~~i~--~~~~~lv~gD~~~~~-~~l~~~l  122 (293)
T 1fxo_A           47 GIREILIISTPQDTPRFQQLLGDGSNWGLDLQYAVQPSP-DGLAQAFLIGESFIG--NDLSALVLGDNLYYG-HDFHELL  122 (293)
T ss_dssp             TCCEEEEEECTTTHHHHHHHHTTSGGGTCEEEEEECSSC-CCGGGHHHHTHHHHT--TSEEEEEETTEEEEC-TTHHHHH
T ss_pred             CCCEEEEEeccccHHHHHHHHhcccccCceEEEeeCCCC-CCHHHHHHHHHHHhC--CCCEEEEECChhccC-ccHHHHH
Confidence            488998766   34667777765   78775 3333332 4544 6778887773  356666669999998 6899999


Q ss_pred             HHHHc-CCCceEEeecccCCCCccCCCCce-EEEEcCCCceecccCCCCCCCCCCCCCCCCCeeEEeeeeeechHHHhhC
Q 027992           81 KALQA-APDAVFSTAVTSLKPEDAFDPNRV-KCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIY  158 (215)
Q Consensus        81 ~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~ip~~~~~~~~q~~p~~~~~~~~~~~~~~l~~~  158 (215)
                      +.+.+ ..++.+.  ..+..     +|... .+..+++|.+..|.+.  |.       .....+.+.+.|+|+...+...
T Consensus       123 ~~~~~~~~~~~v~--~~~v~-----dp~~~g~v~~d~~g~v~~~~ek--p~-------~~~s~~~~~Giy~~~~~~l~~~  186 (293)
T 1fxo_A          123 GSASQRQTGASVF--AYHVL-----DPERYGVVEFDQGGKAISLEEK--PL-------EPKSNYAVTGLYFYDQQVVDIA  186 (293)
T ss_dssp             HHHHTCCSSEEEE--EEECS-----CGGGSEEEEECTTSCEEEEEES--CS-------SCSSSEEEEEEEEECTTHHHHH
T ss_pred             HHHHhcCCCcEEE--EEECC-----CcccCcEEEECCCCcEEEEEEC--CC-------CCCCCeEEEEEEEEcHHHHHHH
Confidence            98853 3344443  23432     23333 2334667776655432  10       0111356788899988766544


Q ss_pred             cCCCCCCCCCccchhhhh-hhhcCCeeEEEEec-C-CCCCCCCHHHHHHHHHHHHh
Q 027992          159 PGLHPTPLQLEEDLEQLK-VLENGYKMKVIKVD-H-EAHGVDAPEDVEKIESFMRE  211 (215)
Q Consensus       159 ~~~~~~~~~~~e~l~~~~-~~~~g~~v~~~~~~-~-~~idIdt~~Dl~~ae~il~~  211 (215)
                      ..+.++.-...+..+..+ +++.| ++.++... . ..+||+|++||..|+.+++.
T Consensus       187 ~~~~~~~~ge~~~td~~~~~l~~g-~~~v~~~~~g~~w~Digt~edl~~a~~~~~~  241 (293)
T 1fxo_A          187 RDLKPSPRGELEITDVNRAYLERG-QLSVEIMGRGYAWLDTGTHDSLLEAGQFIAT  241 (293)
T ss_dssp             HHCCCCTTSSCCHHHHHHHHHHTT-CEEEEECCTTSEEEECCSHHHHHHHHHHHHH
T ss_pred             HhcCcccCCceeHHHHHHHHHhcC-CeEEEEeCCCCEEEcCCCHHHHHHHHHHHHH
Confidence            332221100011112233 33345 45555543 3 58999999999999999863

>1w55_A ISPD/ISPF bifunctional enzyme; biosynthetic pathway, isoprenoids, nonmevalonate, transferase; HET: C GPP; 2.3A {Campylobacter jejuni} SCOP: c.68.1.13 d.79.5.1 PDB: 1w57_A*

Probab=99.02  E-value=2.9e-10  Score=95.91  Aligned_cols=161  Identities=14%  Similarity=0.166  Sum_probs=95.9

Q ss_pred             ccCCCCcEEEEcCc-HHHHHHHHHcCCeEEeCCCCCCCchHHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHHHH
Q 027992            6 HSFLFCGLVVATDD-EKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQ   84 (215)
Q Consensus         6 ~~~~~d~ivV~td~-~~i~~~~~~~g~~v~~~~~~~~~~~~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~~~   84 (215)
                      ++..+++|+|+|++ +.+++.+.  ++.++. .  -.+-..++++|+..+  ..|.+++++||+||+++++|+++++.+.
T Consensus        43 ~~~~~~~IvVvt~~~~~i~~~~~--~v~~v~-~--g~g~~~sv~~aL~~l--~~d~vlv~~~D~Pli~~~~i~~li~~~~  115 (371)
T 1w55_A           43 SFYPFKKIVVTSSNITYMKKFTK--NYEFIE-G--GDTRAESLKKALELI--DSEFVMVSDVARVLVSKNLFDRLIENLD  115 (371)
T ss_dssp             TTSCCSCEEEEESCHHHHHTTCS--SSEEEE-C--CSSHHHHHHHHHTTC--CSSEEEEEETTCTTCCHHHHHHHHTTGG
T ss_pred             ccCCCCeEEEEcCCHHHHHHHhC--CCEEEe-C--CCChHHHHHHHHHhc--CCCeEEEEeCCcccCCHHHHHHHHHHHH
Confidence            44678999999973 33333322  245442 1  112345788898877  3689999999999999999999999886


Q ss_pred             cCCCceEEeecccCCCCccCCCCceEEEEcCCCceecccCCCCCCCCCCCCCCCCCeeEEeeeeeechHHHhhCcCCCCC
Q 027992           85 AAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPT  164 (215)
Q Consensus        85 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ip~~~~~~~~q~~p~~~~~~~~~~~~~~l~~~~~~~~~  164 (215)
                      ++ ++.+++  .+..       ++++.+     ...       + .++..+       ....+++|+...+.+...... 
T Consensus       116 ~~-~a~i~~--~~~~-------d~vk~v-----~~t-------~-~r~~l~-------~~~~P~~f~~~~l~~~~~~~~-  164 (371)
T 1w55_A          116 KA-DCITPA--LKVA-------DTTLFD-----NEA-------L-QREKIK-------LIQTPQISKTKLLKKALDQNL-  164 (371)
T ss_dssp             GC-SEEEEE--ECCC-------SCEEET-----TEE-------E-CGGGCC-------EECSCEEEEHHHHHHHTSSCC-
T ss_pred             hc-CCEEEE--EEee-------cCeeee-----eee-------c-Ccccee-------ecCCcceecHHHHHHHHHhcc-
Confidence            54 554442  3332       333321     000       0 111111       112346777765544221110 


Q ss_pred             CCCCccchhhhhhhh-cCCeeEEEEecCCCCCCCCHHHHHHHHHHHH
Q 027992          165 PLQLEEDLEQLKVLE-NGYKMKVIKVDHEAHGVDAPEDVEKIESFMR  210 (215)
Q Consensus       165 ~~~~~e~l~~~~~~~-~g~~v~~~~~~~~~idIdt~~Dl~~ae~il~  210 (215)
                       .    ..+...+++ .|.++..++.+..++|||||+||..|+ ++.
T Consensus       165 -~----~td~~~ll~~~g~~V~~v~~~~~~~dIdTpeDL~~Ae-ll~  205 (371)
T 1w55_A          165 -E----FTDDSTAIAAMGGKIWFVEGEENARKLTFKEDLKKLD-LPT  205 (371)
T ss_dssp             -C----CSSHHHHHHTTTCCEEEEECCGGGCCCCSGGGGGGSC-CCC
T ss_pred             -c----ccCHHHHHHhCCCcEEEEECCccccCCCCHHHHHHHH-HhC
Confidence             0    011123333 577888888777899999999999998 663

>1lvw_A Glucose-1-phosphate thymidylyltransferase; protein nucleotide complex, nucleotide binding fold; HET: TYD; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.68.1.6

Probab=99.02  E-value=1.4e-08  Score=83.09  Aligned_cols=182  Identities=15%  Similarity=0.171  Sum_probs=104.9

Q ss_pred             CCCcEEEEc---CcHHHHHHHHH---cCCeE-EeCCCCCCCchH-HHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHH
Q 027992            9 LFCGLVVAT---DDEKIAECCQQ---FGADV-IMTSESCRNGTE-RCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVV   80 (215)
Q Consensus         9 ~~d~ivV~t---d~~~i~~~~~~---~g~~v-~~~~~~~~~~~~-~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i   80 (215)
                      .+++|+|+|   +.+.+.+.+..   +|+.+ +...+. ..|+. ++..|+..+. +.+.++++ ||+||.+ ..+.+++
T Consensus        48 gi~~Iivv~~~~~~~~i~~~l~~g~~~g~~i~~~~~~~-~~G~~~al~~a~~~i~-~~~~~lv~-gD~~~~~-~~l~~~l  123 (295)
T 1lvw_A           48 GIRDILIISTPRDLPLYRDLLGDGSQFGVRFSYRVQEE-PRGIADAFIVGKDFIG-DSKVALVL-GDNVFYG-HRFSEIL  123 (295)
T ss_dssp             TCCEEEEEECTTTHHHHHHHHTTSGGGTSEEEEEECSS-CCCGGGHHHHTHHHHT-TSCEEEEE-TTCCEEC-TTHHHHH
T ss_pred             CCCeEEEEeccchHHHHHHHhhhccccCceEEEeeCCC-CCChHHHHHHHHHHhC-CCcEEEEE-CCccccC-cCHHHHH
Confidence            488998876   34667777764   78765 333333 24544 6788887774 33455554 9999998 6899999


Q ss_pred             HHHHc-CCCceEEeecccCCCCccCCCCce-EEEEcCCCceecccCCCCCCCCCCCCCCCCCeeEEeeeeeechHHHhhC
Q 027992           81 KALQA-APDAVFSTAVTSLKPEDAFDPNRV-KCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIY  158 (215)
Q Consensus        81 ~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~ip~~~~~~~~q~~p~~~~~~~~~~~~~~l~~~  158 (215)
                      +.+.+ ..++.+.  ..+..     +|... ++..+++|.+..|.+.+. .++        ..+...+.|+|+...+...
T Consensus       124 ~~~~~~~~~~~v~--~~~v~-----dp~~~g~v~~d~~g~v~~~~ekp~-~~~--------s~~~~~Giy~f~~~~l~~~  187 (295)
T 1lvw_A          124 RRAASLEDGAVIF--GYYVR-----DPRPFGVVEFDSEGRVISIEEKPS-RPK--------SNYVVPGLYFYDNQVVEIA  187 (295)
T ss_dssp             HHHHTCCSSEEEE--EEECS-----CCTTSEEEEECTTSBEEEEEESCS-SCS--------CSEECCSEEEECTTHHHHH
T ss_pred             HHHHHcCCCcEEE--EEECC-----CcccCCEEEECCCCcEEEEEECCC-CCC--------CCEEEEEeEEEcHHHHHHH
Confidence            98853 3344433  23432     23322 333466777765543220 011        1355678899988766544


Q ss_pred             cCCCCCCCCCccchhhhh-hhhcCCeeEEEEec-C-CCCCCCCHHHHHHHHHHHHh
Q 027992          159 PGLHPTPLQLEEDLEQLK-VLENGYKMKVIKVD-H-EAHGVDAPEDVEKIESFMRE  211 (215)
Q Consensus       159 ~~~~~~~~~~~e~l~~~~-~~~~g~~v~~~~~~-~-~~idIdt~~Dl~~ae~il~~  211 (215)
                      ..+.++.-...+..+..+ +++.| ++.++... . ..+||+|++||..|+.+++.
T Consensus       188 ~~~~~~~~ge~~~td~~~~~l~~g-~~~v~~~~~g~~w~Digt~edl~~a~~~~~~  242 (295)
T 1lvw_A          188 RRIEPSDRGELEITSVNEEYLRMG-KLRVELMGRGMAWLDTGTHDGLLEASSFIET  242 (295)
T ss_dssp             HHCCCCTTSCCCHHHHHHHHHHTT-CEEEEEECTTCEECCCSSHHHHHHHHHHHHH
T ss_pred             HhcCCcccCceeHHHHHHHHHHcC-CcEEEEeCCCCeEEeCCCHHHHHHHHHHHHH
Confidence            332221100011112222 33345 34444443 3 58999999999999999863

>3juk_A UDP-glucose pyrophosphorylase (GALU); transfer; HET: UPG; 2.30A {Helicobacter pylori} PDB: 3juj_A*

Probab=99.00  E-value=3.2e-09  Score=86.06  Aligned_cols=185  Identities=8%  Similarity=0.059  Sum_probs=110.9

Q ss_pred             CCCcEEEEc--CcHHHHHHHHH------------------------cCCeE-EeCCCCCCCch-HHHHHHHHHhcCCCCE
Q 027992            9 LFCGLVVAT--DDEKIAECCQQ------------------------FGADV-IMTSESCRNGT-ERCNEALQKLEKKYDI   60 (215)
Q Consensus         9 ~~d~ivV~t--d~~~i~~~~~~------------------------~g~~v-~~~~~~~~~~~-~~i~~~l~~~~~~~d~   60 (215)
                      .+++|+|+|  +.+.|.+.+..                        +|+.+ +.+... ..|+ .+++.|+..+.  .+.
T Consensus        47 gi~~i~vv~~~~~~~i~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~Gt~~al~~a~~~l~--~~~  123 (281)
T 3juk_A           47 GCEVMAIVTGRNKRSLEDYFDTSYEIEHQIQGTNKENALKSIRNIIEKCCFSYVRQKQ-MKGLGHAILTGEALIG--NEP  123 (281)
T ss_dssp             TCCEEEEEECTTHHHHHHHTSCCC--------CCHHHHHHHHHHHHHHCEEEEEECSS-CCCHHHHHHHTHHHHC--SSC
T ss_pred             CCCEEEEEecCCHHHHHHHHhcchhhhhhhhcccchhhhhhhhccccCccEEEEecCC-CCCcHHHHHHHHHHcC--CCC
Confidence            489999999  55677766543                        35665 333333 2455 57888888873  367


Q ss_pred             EEEecCCCCCCCHH----HHHHHHHHHHcCCCceEEeecccCCCCccCCCCce-EEEEcC--CC--ceecccCCCCCCCC
Q 027992           61 VVNIQGDEPLIEPE----IIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRV-KCVVDN--HG--YAIYFSRGLIPYNK  131 (215)
Q Consensus        61 v~~~~~d~Pli~~~----~i~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~--~g--~~~~~~~~~ip~~~  131 (215)
                      ++++.||. +++++    .++++++.+.+...+.+++...+..     +|... .+..++  +|  .+..|.+.+.+   
T Consensus       124 ~lv~~~D~-~~~~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~-----~~~~~g~v~~~~~~~g~~~v~~~~Ekp~~---  194 (281)
T 3juk_A          124 FAVILADD-LCISHDHPSVLKQMTSLYQKYQCSIVAIEEVALE-----EVSKYGVIRGEWLEEGVYEIKDMVEKPNQ---  194 (281)
T ss_dssp             EEEECTTE-EEECTTSCCHHHHHHHHHHHHCSCEEEEEECCTT-----TGGGSEEEEEEEEETTEEEEEEEEESCCT---
T ss_pred             EEEEeCCe-eccCccchHHHHHHHHHHHHcCCCEEEEEEechh-----hcccCCEEEeccCCCCceEEeEEEECcCC---
Confidence            99999999 88888    8999999986432355554322211     11222 222333  55  55544332110   


Q ss_pred             CCCCCCCCCeeEEeeeeeechHHHhhCcCCCCCCCCCccc-h-hhhh-hhhcCCeeEEEEecCCCCCCCCHHHHHHHHHH
Q 027992          132 SGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEED-L-EQLK-VLENGYKMKVIKVDHEAHGVDAPEDVEKIESF  208 (215)
Q Consensus       132 ~~~~~q~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~-l-~~~~-~~~~g~~v~~~~~~~~~idIdt~~Dl~~ae~i  208 (215)
                          .+......+.+.|+|+.+.+........+  ...|. + +... .+..| ++..++.+...+||+|++||..|+..
T Consensus       195 ----~~~~~~~~~~GiYi~~~~~l~~l~~~~~~--~~~e~~l~d~i~~l~~~~-~v~~~~~~g~~~dIgt~~d~~~a~~~  267 (281)
T 3juk_A          195 ----EDAPSNLAVIGRYILTPDIFEILSETKPG--KNNEIQITDALRTQAKRK-RIIAYQFKGKRYDCGSVEGYIEASNA  267 (281)
T ss_dssp             ----TTCSCSEEEEEEEEECTTHHHHHHTCCCC--GGGSCCHHHHHHHHHHHS-CCEEEECCSEEEETTSHHHHHHHHHH
T ss_pred             ----CCCCcceeEEEEEEECHHHHHHHHhcCCC--CCCceeHHHHHHHHHhcC-CEEEEEeCCeEEcCCCHHHHHHHHHH
Confidence                01112466788899988776544433211  11111 2 2222 22245 78888877788999999999999988


Q ss_pred             HHhh
Q 027992          209 MRER  212 (215)
Q Consensus       209 l~~~  212 (215)
                      +...
T Consensus       268 l~~~  271 (281)
T 3juk_A          268 YYKK  271 (281)
T ss_dssp             HHHH
T ss_pred             HHhc
Confidence            8654

>2pa4_A UTP-glucose-1-phosphate uridylyltransferase; phosphorylase, nucleotidyltransferase, metabolism; HET: GUD; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=98.99  E-value=2.6e-09  Score=88.47  Aligned_cols=186  Identities=11%  Similarity=0.083  Sum_probs=107.0

Q ss_pred             CCCCcEEEEcCc--HHHHHHHHH------------------------cCCeE-EeCCCCCCCchH-HHHHHHHHhcCCCC
Q 027992            8 FLFCGLVVATDD--EKIAECCQQ------------------------FGADV-IMTSESCRNGTE-RCNEALQKLEKKYD   59 (215)
Q Consensus         8 ~~~d~ivV~td~--~~i~~~~~~------------------------~g~~v-~~~~~~~~~~~~-~i~~~l~~~~~~~d   59 (215)
                      ..+++|+|+|..  +.+.+.+..                        .|+.+ +.++... .|+. ++..|+..+..+.|
T Consensus        56 ~gi~~iivv~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~i~~~~~~~~-~Gt~~al~~a~~~l~~~~d  134 (323)
T 2pa4_A           56 LGATRLAIITAPNKAGVLAHFERSSELEETLMERGKTDQVEIIRRAADLIKAVPVTQDKP-LGLGHAVGLAESVLDDDED  134 (323)
T ss_dssp             TTCCEEEEEECTTCHHHHHTTSCCHHHHHHHHHTTCHHHHHHTTHHHHHCEEEEEECSSC-CCHHHHHHTTGGGSCSSCC
T ss_pred             CCCCEEEEEecCcHHHHHHHHhccchhhhhhhccchhhhhhhhhccccCcceEEEeCCcc-CCcHHHHHHHHHHhcCCCC
Confidence            358999999965  666654321                        35554 3333332 4554 56777766644557


Q ss_pred             EEEEecCCCCCCC-HHHHHHHHHHHHcCCCceEEeecccCCCCccCCCCceEEEEc----CCC--ceecccCCCCCCCCC
Q 027992           60 IVVNIQGDEPLIE-PEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVD----NHG--YAIYFSRGLIPYNKS  132 (215)
Q Consensus        60 ~v~~~~~d~Pli~-~~~i~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~----~~g--~~~~~~~~~ip~~~~  132 (215)
                      .++++.||.|+ + +.+++++++.+.+...+.+++...+..  +  .+..-.+..+    ++|  .+..|.+.+      
T Consensus       135 ~~lv~~~D~~~-~~~~~l~~l~~~~~~~~~~~i~~~~~~~~--~--~~~yg~v~~d~~~~~~~~~~V~~~~Ekp------  203 (323)
T 2pa4_A          135 VVAVMLPDDLV-LPTGVMERMAQVRAEFGGSVLCAVEVSEA--D--VSKYGIFEIEADTKDSDVKKVKGMVEKP------  203 (323)
T ss_dssp             EEEEECTTEEE-ESSCHHHHHHHHHHTTCSEEEEEEECCGG--G--GGGSEEEEEEECCSSTTEEEEEEEEESC------
T ss_pred             eEEEEeCCccc-CchHHHHHHHHHHHhcCCcEEEEEEeccc--c--cCCccEEEeCCcccCCCceeEEEEEECC------
Confidence            79999999999 7 789999999887543333443222110  0  0011112223    343  554443321      


Q ss_pred             CCCCCCCC--eeEEeeeeeechHHHhhCcCCCCCCCCCcc-ch-hhhh-hhhcCCeeEEEEecCCCCCCCCHHHHHHHHH
Q 027992          133 GKVNPQFP--YLLHLGIQSYDSNFLKIYPGLHPTPLQLEE-DL-EQLK-VLENGYKMKVIKVDHEAHGVDAPEDVEKIES  207 (215)
Q Consensus       133 ~~~~q~~p--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~e-~l-~~~~-~~~~g~~v~~~~~~~~~idIdt~~Dl~~ae~  207 (215)
                         .++.+  ...+.+.|+|....+..+.....+.  ..+ ++ +... .++.|.++..++.+...+||||++||..|+.
T Consensus       204 ---~~~~~~~~~~~~GiY~~~~~~~~~l~~~~~~~--~ge~~l~d~i~~l~~~g~~v~~~~~~g~w~DIgt~~dl~~a~~  278 (323)
T 2pa4_A          204 ---AIEDAPSRLAATGRYLLDRKIFDALRRITPGA--GGELQLTDAIDLLIDEGHPVHIVIHQGKRHDLGNPGGYIPACV  278 (323)
T ss_dssp             ---CTTTCSCSEEEEEEEEEETHHHHHHHHCCCCG--GGCCCHHHHHHHHHHTTCCEEEEECCSEEEECSSHHHHHHHHH
T ss_pred             ---CCccccccEEEEEEEEECHHHHHHHHhhCCCC--CCeEeHHHHHHHHHHcCCCEEEEEeCCeEEeCCCHHHHHHHHH
Confidence               11122  4567888999887665443322110  011 11 2222 2345778888887767899999999999985


Q ss_pred             HHH
Q 027992          208 FMR  210 (215)
Q Consensus       208 il~  210 (215)
                      .+.
T Consensus       279 ~~~  281 (323)
T 2pa4_A          279 DFG  281 (323)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            554

>3ngw_A Molybdopterin-guanine dinucleotide biosynthesis P (MOBA); alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.31A {Archaeoglobus fulgidus}

Probab=98.89  E-value=2.7e-08  Score=77.38  Aligned_cols=77  Identities=18%  Similarity=0.261  Sum_probs=56.0

Q ss_pred             cEEEEcCc-HHHHHHHHHcCCeEEeCCCCCCCchHHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHHHHc-CCCc
Q 027992           12 GLVVATDD-EKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA-APDA   89 (215)
Q Consensus        12 ~ivV~td~-~~i~~~~~~~g~~v~~~~~~~~~~~~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~~~~-~~~~   89 (215)
                      +|+|++.+ +.+..+++.+|+.++..+..-.|-..+++.|+..+   .|.+ ++.||+||++++.|+++++.+.. +.+.
T Consensus        40 ~vvvv~~~~~~~~~~~~~~~~~~v~d~~~~~G~~~si~~gl~~~---~~~v-v~~~D~P~i~~~~i~~l~~~~~~~~~~~  115 (208)
T 3ngw_A           40 QTVFVCRDEKQAEKLSSRYEAEFIWDLHKGVGSIAGIHAALRHF---GSCV-VAAIDMPFVKPEVLEHLYKEGEKAGCDA  115 (208)
T ss_dssp             EEEEECSSHHHHHHHHTTSCSCEECCTTCCCSHHHHHHHHHHHH---SSEE-EEETTCTTCCHHHHHHHHHHHHHHTCSE
T ss_pred             CEEEEECCHHHHHHHHHhcCCeEEecCCCCCChHHHHHHHHHHc---CCCE-EEECCccCCCHHHHHHHHHHhhcCCCCE
Confidence            88999975 44555666588887754322122345789999887   5789 99999999999999999999864 4454


Q ss_pred             eEE
Q 027992           90 VFS   92 (215)
Q Consensus        90 ~i~   92 (215)
                      +++
T Consensus       116 v~~  118 (208)
T 3ngw_A          116 LIP  118 (208)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            443

>2ggo_A 401AA long hypothetical glucose-1-phosphate thymidylyltransferase; beta barrel; 1.80A {Sulfolobus tokodaii} PDB: 2ggq_A*

Probab=98.86  E-value=1.3e-08  Score=86.46  Aligned_cols=178  Identities=13%  Similarity=0.152  Sum_probs=102.3

Q ss_pred             CCCcEEEEcCcHHHHHHHHHc--CCeEEeCCCCCCCchHHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHHHHcC
Q 027992            9 LFCGLVVATDDEKIAECCQQF--GADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAA   86 (215)
Q Consensus         9 ~~d~ivV~td~~~i~~~~~~~--g~~v~~~~~~~~~~~~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~~~~~   86 (215)
                      .+++|+|+|..+ +.+.+...  ++.++..+. ...|+.   +++..... .+.++++.+|+||.++++++++++    .
T Consensus        45 ~~~~i~vv~~~~-i~~~~~~~~~~i~~~~~~~-~~~g~~---~~l~~~~~-~~~~lv~~~D~~~~~~~~~~~l~~----~  114 (401)
T 2ggo_A           45 GIRDITVIVSSK-NKEYFEKKLKEISIVTQKD-DIKGTG---AAILSAKF-NDEALIIYGDLFFSNEKEICNIIT----L  114 (401)
T ss_dssp             TCCEEEEEECGG-GHHHHHHHCTTCEEEECCT-TCCBST---TTGGGCCC-SSEEEEEETTEEESCSHHHHHHTT----C
T ss_pred             CCCEEEEEeCHH-HHHHhhccCCcEEEEeCCC-CCCChH---HHHHHhcc-CCCEEEEeCccccccHHHHHHHHH----h
Confidence            489999999877 77776654  566654432 112332   22222211 578999999999999999988876    2


Q ss_pred             CCceEEeecccCCCCccCCCCceEEEEcCCCceecccCCCCCCCCCCCCCCCCCeeEEeeeeeechHHHhhCcCCCCCCC
Q 027992           87 PDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPL  166 (215)
Q Consensus        87 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ip~~~~~~~~q~~p~~~~~~~~~~~~~~l~~~~~~~~~~~  166 (215)
                      .+..+.+  .+...    .....++..+++|.+..+.+.+         .+........+.|+|+...+..+..+.....
T Consensus       115 ~~~~i~~--~~~~~----~~~~~~v~~~~~g~v~~~~ek~---------~~~~~~~~~~Giy~~~~~~~~~l~~~~~~~~  179 (401)
T 2ggo_A          115 KENAIIG--VKVSN----PKDYGVLVLDNQNNLSKIIEKP---------EIPPSNLINAGIYKLNSDIFTYLDKISISER  179 (401)
T ss_dssp             SSEEEEE--EECSC----CSSSCEEEECTTSSEEEEECSC---------SSCSCSEEEEEEEEEETHHHHHHHHSCCCSS
T ss_pred             cCCEEEE--EEcCC----CcceeEEEECCCCeEEEEEECC---------CCCCCcEEEEEEEEEcHHHHHHhhhcCcCCC
Confidence            3444443  23321    0112123345566655443221         1111246677788998766544332211100


Q ss_pred             CCccch-hhhhhhhcCCeeEEEEecCCCCCCCCHHHHHHHHHHHHhh
Q 027992          167 QLEEDL-EQLKVLENGYKMKVIKVDHEAHGVDAPEDVEKIESFMRER  212 (215)
Q Consensus       167 ~~~e~l-~~~~~~~~g~~v~~~~~~~~~idIdt~~Dl~~ae~il~~~  212 (215)
                      . ..++ +..+.++.|.++..++.+...+||||++||..|+.++..+
T Consensus       180 ~-~~~~~~~~~~~~~g~~v~~~~~~~~~~dI~t~edl~~a~~~l~~~  225 (401)
T 2ggo_A          180 G-ELELTDAINLMAKDHRVKVIEYEGYWMDIGKPWNIIDVNKWALDN  225 (401)
T ss_dssp             S-CBCHHHHHHHHHHHSCEEEEECCSCEEECCSHHHHHHHHHHHHHH
T ss_pred             C-ceEHHHHHHHHHCCCcEEEEEecceEEcCCCHHHHHHHHHHHHHh
Confidence            0 0111 2222223466788888777889999999999999988653

>1mc3_A Glucose-1-phosphate thymidylyltransferase; glucose-1-phosphate thymidylytransferase, RFFH; HET: TTP; 2.60A {Escherichia coli} SCOP: c.68.1.6

Probab=98.85  E-value=4.6e-08  Score=80.08  Aligned_cols=183  Identities=15%  Similarity=0.125  Sum_probs=104.5

Q ss_pred             CCCCcEEEEc---CcHHHHHHHHH---cCCeE-EeCCCCCCCch-HHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHH
Q 027992            8 FLFCGLVVAT---DDEKIAECCQQ---FGADV-IMTSESCRNGT-ERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGV   79 (215)
Q Consensus         8 ~~~d~ivV~t---d~~~i~~~~~~---~g~~v-~~~~~~~~~~~-~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~   79 (215)
                      ..+++|+|+|   +.+.+.+.+..   +|+.+ +...+. ..|+ .++..|+..+. +.+.+++ .||+||.+ ..+.++
T Consensus        47 ~gi~~I~vv~~~~~~~~i~~~l~~g~~~g~~i~~~~~~~-~~G~~~al~~a~~~i~-~~~~~lv-~gD~~~~~-~~l~~~  122 (296)
T 1mc3_A           47 AGIREILIITTPEDKGYFQRLLGDGSEFGIQLEYAEQPS-PDGLAQAFIIGETFLN-GEPSCLV-LGDNIFFG-QGFSPK  122 (296)
T ss_dssp             TTCCEEEEEECTTTHHHHHHHHTTSGGGTCEEEEEECSS-CCCSTHHHHHTHHHHT-TSCEEEE-ETTEEEEC-SSCHHH
T ss_pred             CCCCcEEEEechhHHHHHHHHHhcccccCceEEEeccCC-CCCHHHHHHHHHHHhC-CCCEEEE-ECCccccc-cCHHHH
Confidence            3488998876   34667777654   67765 333323 2444 46788887774 3344444 49999998 688999


Q ss_pred             HHHHHc-CCCceEEeecccCCCCccCCCCce-EEEEcCCCceecccCCCCCCCCCCCCCCCCCeeEEeeeeeechHHHhh
Q 027992           80 VKALQA-APDAVFSTAVTSLKPEDAFDPNRV-KCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKI  157 (215)
Q Consensus        80 i~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~ip~~~~~~~~q~~p~~~~~~~~~~~~~~l~~  157 (215)
                      ++.+.+ ..++.+.  ..+..     +|..+ .+..+++|.+..|.+.+.         .......+.+.|+|+...+..
T Consensus       123 l~~~~~~~~~~~v~--~~~v~-----dp~~yg~v~~d~~g~v~~~~ekp~---------~~~s~~~~~Giy~~~~~~l~~  186 (296)
T 1mc3_A          123 LRHVAARTEGATVF--GYQVM-----DPERFGVVEFDDNFRAISLEEKPK---------QPKSNWAVTGLYFYDSKVVEY  186 (296)
T ss_dssp             HHHHTTCCSSEEEE--EEECS-----CCSSSBBCEEETTEEEEECCBSCS---------SCSCSEEEEEEEECCTHHHHH
T ss_pred             HHHHHHcCCCCEEE--EEECC-----CcccCCEEEECCCCcEEEEEECCC---------CCCCCEEEEEEEEEcHHHHHH
Confidence            988853 3344443  23432     23322 222356777665543210         000135678889998877655


Q ss_pred             CcCCCCCCCCCccchhhhh-hhhcCCeeEEEEec-C-CCCCCCCHHHHHHHHHHHHh
Q 027992          158 YPGLHPTPLQLEEDLEQLK-VLENGYKMKVIKVD-H-EAHGVDAPEDVEKIESFMRE  211 (215)
Q Consensus       158 ~~~~~~~~~~~~e~l~~~~-~~~~g~~v~~~~~~-~-~~idIdt~~Dl~~ae~il~~  211 (215)
                      ...+.++.-...+..+..+ +++.| ++.++..+ . ..+||+|++||..|+.+++.
T Consensus       187 ~~~~~~~~~ge~~~td~~~~~l~~g-~~~v~~~~~g~~w~Digt~edl~~a~~~~~~  242 (296)
T 1mc3_A          187 AKQVKPSERGELEITSINQMYLEAG-NLTVELLGRGFAWLDTGTHDSLIEASTFVQT  242 (296)
T ss_dssp             HHSCCCCSSSSCCHHHHHHHHHHTT-CEEEEECCTTCEEEECCSHHHHHHHHHHHHH
T ss_pred             HHhcCccccCCccHHHHHHHHHhcC-CeEEEEeCCCCEEEeCCCHHHHHHHHHHHHH
Confidence            4443322100011112222 33345 45555553 3 47999999999999998863

>3d5n_A Q97W15_sulso; NESG, SSR125, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.80A {Sulfolobus solfataricus}

Probab=98.83  E-value=9.8e-09  Score=79.02  Aligned_cols=69  Identities=14%  Similarity=0.207  Sum_probs=49.7

Q ss_pred             cEEEEcCc--HHHHHHHHHcCCeEEeCCCCCCCchHHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHHH
Q 027992           12 GLVVATDD--EKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKAL   83 (215)
Q Consensus        12 ~ivV~td~--~~i~~~~~~~g~~v~~~~~~~~~~~~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~~   83 (215)
                      +|+|+|..  +++.+.+. .|+ ++..+....|...+++.|+..+. +.|.++++.||+||++++.|+++++.+
T Consensus        42 ~ivvv~~~~~~~~~~~~~-~~~-~v~~~~~~~G~~~si~~al~~~~-~~~~vlv~~~D~P~i~~~~i~~l~~~~  112 (197)
T 3d5n_A           42 EKIIIVGKYVNEMLPLLM-DQI-VIYNPFWNEGISTSLKLGLRFFK-DYDAVLVALGDMPFVTKEDVNKIINTF  112 (197)
T ss_dssp             BCCEEECTTHHHHGGGCT-TSC-EEECTTGGGCHHHHHHHHHHHTT-TSSEEEEEETTCCCSCHHHHHHHHHTC
T ss_pred             CEEEEECCCHHHHHHHhc-CCE-EEECCCCCCCHHHHHHHHHHhhc-cCCcEEEEeCCccccCHHHHHHHHHHh
Confidence            66777754  45554444 577 65544322344567899998874 348999999999999999999999877

>2e3d_A UTP--glucose-1-phosphate uridylyltransferase; UDP-glucose, carbohydrate, pyrophosphorylase; 1.95A {Escherichia coli}

Probab=98.80  E-value=1e-07  Score=77.92  Aligned_cols=177  Identities=12%  Similarity=0.116  Sum_probs=102.9

Q ss_pred             CCCcEEEEcCc--HHHHHHHHH-------------------------cCCeE-EeCCCCCCCchH-HHHHHHHHhcCCCC
Q 027992            9 LFCGLVVATDD--EKIAECCQQ-------------------------FGADV-IMTSESCRNGTE-RCNEALQKLEKKYD   59 (215)
Q Consensus         9 ~~d~ivV~td~--~~i~~~~~~-------------------------~g~~v-~~~~~~~~~~~~-~i~~~l~~~~~~~d   59 (215)
                      .+++|+|+|..  +.|.+.+..                         .|+.+ +.++.. ..|+. +++.|+..+.  .+
T Consensus        53 gi~~i~vv~~~~~~~i~~~~~~~~~l~~~l~~~~~~~~l~~~~~~~~~~~~i~~~~~~~-~~Gt~~al~~a~~~~~--~~  129 (302)
T 2e3d_A           53 GITEIVLVTHSSKNSIENHFDTSFELEAMLEKRVKRQLLDEVQSICPPHVTIMQVRQGL-AKGLGHAVLCAHPVVG--DE  129 (302)
T ss_dssp             TCCEEEEEECGGGHHHHHHHSCCHHHHHHHC----CHHHHHHHHTSCTTCEEEEEECSS-CCCHHHHHHHTHHHHC--SS
T ss_pred             CCCEEEEEeCCCHHHHHHHHhcchhhhhhhhhccchhhhhhhhhccccCcceEEeeCCc-cCCHHHHHHHHHHHcC--CC
Confidence            58999999975  667666542                         35665 334333 34554 6788887773  36


Q ss_pred             EEEEecCCCCCCC---HH---HHHHHHHHHHcCCCceEEeecccCCCCccCCCCceEEE-Ec----CCC---ceecccCC
Q 027992           60 IVVNIQGDEPLIE---PE---IIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCV-VD----NHG---YAIYFSRG  125 (215)
Q Consensus        60 ~v~~~~~d~Pli~---~~---~i~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~----~~g---~~~~~~~~  125 (215)
                      .++++.||.|+-.   +.   +++++++.+++.....+++  .+..     ++....++ .+    ++|   .+..|.+.
T Consensus       130 ~~lv~~~D~~~~~~~~~~~~~~l~~l~~~~~~~~~~~i~~--~~~~-----~~~~yg~v~~~~~~~~~g~~~~v~~~~ek  202 (302)
T 2e3d_A          130 PVAVILPDVILDEYESDLSQDNLAEMIRRFDETGHSQIMV--EPVA-----DVTAYGVVDCKGVELAPGESVPMVGVVEK  202 (302)
T ss_dssp             CEEEECTTEEECTTSSCTTTSTHHHHHHHHHHHCCEEEEE--EECS-----CGGGSEEEECTTCCCCTTCEEEECEEEES
T ss_pred             cEEEEcCCccccCccccchHHHHHHHHHHHHhcCCcEEEE--EEcc-----CCCCccEEEecccccCCCCceeEEEEEEC
Confidence            7999999999832   56   8999999886432333343  2321     11222222 21    345   44433322


Q ss_pred             CCCCCCCCCCCCCCC--eeEEeeeeeechHHHhhCcCCCCCCCCCcc-ch-hhhh-hhhcCCeeEEEEecCCCCCCCCHH
Q 027992          126 LIPYNKSGKVNPQFP--YLLHLGIQSYDSNFLKIYPGLHPTPLQLEE-DL-EQLK-VLENGYKMKVIKVDHEAHGVDAPE  200 (215)
Q Consensus       126 ~ip~~~~~~~~q~~p--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~e-~l-~~~~-~~~~g~~v~~~~~~~~~idIdt~~  200 (215)
                        |       .++.+  ...+.+.|+|+.+++..+....++.  ..+ ++ +... .++.| ++..++.+...+||+|++
T Consensus       203 --p-------~~~~~~~~~~~~Giyi~~~~~l~~l~~~~~~~--~~~~~l~d~i~~l~~~~-~v~~~~~~~~~~DIgt~~  270 (302)
T 2e3d_A          203 --P-------KADVAPSNLAIVGRYVLSADIWPLLAKTPPGA--GDEIQLTDAIDMLIEKE-TVEAYHMKGKSHDCGNKL  270 (302)
T ss_dssp             --C-------CTTTCSCSEEEEEEEEECTTHHHHHTCCCC------CCCHHHHHHHHHHHS-CEEEEECCSCEEECSSHH
T ss_pred             --C-------CCCccccceEEEEEEEECHHHHHHHHhhCCCC--CCceehHHHHHHHHHhC-CEEEEEeCCeEEcCCCHH
Confidence              1       11111  4567888999887665544332210  011 11 2222 23346 788888777889999999


Q ss_pred             HHHHHHH
Q 027992          201 DVEKIES  207 (215)
Q Consensus       201 Dl~~ae~  207 (215)
                      ||..|+.
T Consensus       271 d~~~a~~  277 (302)
T 2e3d_A          271 GYMQAFV  277 (302)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9999983

>2qh5_A PMI, ALGA, mannose-6-phosphate isomerase; structural genomics, PSI, protein structure initi nysgrc; 2.30A {Helicobacter pylori}

Probab=98.71  E-value=1.7e-08  Score=82.96  Aligned_cols=188  Identities=10%  Similarity=0.113  Sum_probs=95.6

Q ss_pred             CCcEEEEcCc---HHHHHHHHH-cCC-eE-EeCCCCCCCchH-HHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHH
Q 027992           10 FCGLVVATDD---EKIAECCQQ-FGA-DV-IMTSESCRNGTE-RCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKA   82 (215)
Q Consensus        10 ~d~ivV~td~---~~i~~~~~~-~g~-~v-~~~~~~~~~~~~-~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~   82 (215)
                      +++|+|+|..   +.+.+.+.. +|+ .+ +..++. ..|+. ++..++..+. ..+.++++.||.|+++++.+.++++.
T Consensus        51 ~~~i~vv~~~~~~~~i~~~~~~~~~~~~~~~i~~~~-~~gt~~al~~a~~~l~-~~~~~lv~~~D~~~~~~~~~~~~~~~  128 (308)
T 2qh5_A           51 VDETLIVCNEKHYFLALEEIKNEIKNKSVGFLLESL-SKNTANAIALSALMSD-KEDLLIVTPSDHLIKDLQAYENAIKK  128 (308)
T ss_dssp             CSEEEEEEEGGGHHHHHHHTTTTCSSCEEEEEEESS-CCCHHHHHHHHHHTSC-TTSEEEEEESSCBCCCHHHHHHHHHH
T ss_pred             CCCEEEEEChhHHHHHHHHHHHhhCCCccEEEeCCC-CCChHHHHHHHHHHhC-CCCeEEEEcCCccccCHHHHHHHHHH
Confidence            8999999965   366777776 676 43 333322 34655 5677777662 34579999999999999999999987


Q ss_pred             ---HHcCCCceEEeecccCCCCccCCCCceEEEEcCCCceecccCCCCCCCCCCCCCCCC----CeeEEeeeeeechHHH
Q 027992           83 ---LQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQF----PYLLHLGIQSYDSNFL  155 (215)
Q Consensus        83 ---~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ip~~~~~~~~q~~----p~~~~~~~~~~~~~~l  155 (215)
                         +.+. ++.+++...+...    ++..-.+..+++|.+..|.+.+.+     ...|+.    .+..+.+.|+|+.+.+
T Consensus       129 ~~~~~~~-~~~~t~~~~~~~~----~~~~g~i~~d~~~~V~~~~Ekp~~-----~~~~~~~~~g~~~~n~Giy~~~~~~l  198 (308)
T 2qh5_A          129 AIDLAQK-GFLVTFGVSIDKP----NTEFGYIESPNGLDVKRFIEKPSL-----DKAIEFQKSGGFYFNSGMFVFQAGVF  198 (308)
T ss_dssp             HHHHHHT-TCEEEEEEECSSC----CTTSEEEECSSSSBCSEEEESCCH-----HHHHHHHHHCCEEEEEEEEEEEHHHH
T ss_pred             HHHHHhc-CCEEEEEEecCCC----CCCceEEEECCCCEEEEEEECCCh-----HHHHHHhhcCCeEEEeEEEEEEHHHH
Confidence               4332 3344443334321    111222222445666555432211     001111    2566788899987653


Q ss_pred             -hhCcCCCCCC------------------CCCc----cchhh-------hhhhhcCCeeEEEEecCCCCCCCCHHHHHHH
Q 027992          156 -KIYPGLHPTP------------------LQLE----EDLEQ-------LKVLENGYKMKVIKVDHEAHGVDAPEDVEKI  205 (215)
Q Consensus       156 -~~~~~~~~~~------------------~~~~----e~l~~-------~~~~~~g~~v~~~~~~~~~idIdt~~Dl~~a  205 (215)
                       ..+..+.+..                  ++..    +.+..       .++++.|.++.+++.+....||+|++|+..+
T Consensus       199 l~~l~~~~p~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~sid~~lle~~~~v~~~~~~~~w~digt~~~l~~~  278 (308)
T 2qh5_A          199 LDELKKHAPTILKGCERAFESLENAYFFEKKIARLSEKSMQDLEDMSIDIALMQQSHKIKMVELNAKWSDLGNFNALFEE  278 (308)
T ss_dssp             HHHHHHHCHHHHHHHHHHGGGCEEECCSSSCEEEECHHHHHTSCCCCHHHHTTTTCSCEEEEECCSCCBC----------
T ss_pred             HHHHHHhChHHHHHHHHHhhccccccccchhhhhhhHHHHhhCcccceeHHHhcCCCcEEEEECCCceeCCCCHHHHHHH
Confidence             2221111000                  0100    00000       0245567889988887788999999999988


Q ss_pred             HHHH
Q 027992          206 ESFM  209 (215)
Q Consensus       206 e~il  209 (215)
                      ....
T Consensus       279 ~~~~  282 (308)
T 2qh5_A          279 AANE  282 (308)
T ss_dssp             ----
T ss_pred             hhcC
Confidence            7654

>2ux8_A Glucose-1-phosphate uridylyltransferase; UGPG, GALU pyrophosphorylase, nucleotidyltransferase; HET: G1P; 2.65A {Sphingomonas elodea}

Probab=98.69  E-value=3.7e-08  Score=80.44  Aligned_cols=182  Identities=8%  Similarity=0.061  Sum_probs=96.3

Q ss_pred             CCCcEEEEcC--cHHHHHHHHH-----------------------cCCeE-EeCCCCCCCchH-HHHHHHHHhcCCCCEE
Q 027992            9 LFCGLVVATD--DEKIAECCQQ-----------------------FGADV-IMTSESCRNGTE-RCNEALQKLEKKYDIV   61 (215)
Q Consensus         9 ~~d~ivV~td--~~~i~~~~~~-----------------------~g~~v-~~~~~~~~~~~~-~i~~~l~~~~~~~d~v   61 (215)
                      .+++|+|+|.  .+.|.+.+..                       .|+.+ +.++.. ..|+. ++..|+..+.  .+.+
T Consensus        59 g~~~i~vv~~~~~~~i~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~i~~~~~~~-~~Gt~~al~~a~~~~~--~~~~  135 (297)
T 2ux8_A           59 GIEQMIFVTGRGKSALEDHFDIAYELEATMAARGKSLDVLDGTRLKPGNIAYVRQQE-PMGLGHAVWCARDIVG--DEPF  135 (297)
T ss_dssp             TCCEEEEEECTTCHHHHHHTSCCHHHHHHHHTTTCCGGGGTTSCCSTTSEEEEECCS-CCCHHHHHHTTHHHHC--SSCE
T ss_pred             CCCEEEEEeCCCHHHHHHHHhhhhhhhhhhhhccchhhhhhhcccCCCceEEEeCCC-CCChHHHHHHHHHHcC--CCcE
Confidence            5899999996  5677766542                       34444 333333 24554 6777777773  4789


Q ss_pred             EEecCCCCCCC-HHHHHHHHHHHHcCCCceEEeecccCCCCccCCCCceEEE-Ec--CCC--ceecccCCCCCCCCCCCC
Q 027992           62 VNIQGDEPLIE-PEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCV-VD--NHG--YAIYFSRGLIPYNKSGKV  135 (215)
Q Consensus        62 ~~~~~d~Pli~-~~~i~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~--~~g--~~~~~~~~~ip~~~~~~~  135 (215)
                      +++.||.|+-. +.+++++++.+++...+.+++...+.     .++..+.++ .+  ++|  .+..|.+.+         
T Consensus       136 lv~~~D~~~~~~~~~l~~l~~~~~~~~~~~i~~~~~~~-----~~~~~yg~v~~~~~~~~~~~v~~~~ekp---------  201 (297)
T 2ux8_A          136 AVLLPDDFMFGQPGCLKQMVDAYNKVGGNLICAEEVPD-----DQTHRYGIITPGTQDGVLTEVKGLVEKP---------  201 (297)
T ss_dssp             EEECTTEEEESSSCHHHHHHHHHHHHCSEEEEEC----------------CCCCCCBCSSEEEC----------------
T ss_pred             EEEeCCeecCCChHHHHHHHHHHHhcCCCEEEEEecCc-----ccCCCCCeEEecccCCCceeEEEEEECC---------
Confidence            99999999532 68999999988643233444322211     112222222 12  133  333332211         


Q ss_pred             CCCCC--eeEEeeeeeechHHHhhCcCCCCC---CCCCccchhhhhhhhcCCeeEEEEecCCCCCCCCHHHHHHHHHHHH
Q 027992          136 NPQFP--YLLHLGIQSYDSNFLKIYPGLHPT---PLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAPEDVEKIESFMR  210 (215)
Q Consensus       136 ~q~~p--~~~~~~~~~~~~~~l~~~~~~~~~---~~~~~e~l~~~~~~~~g~~v~~~~~~~~~idIdt~~Dl~~ae~il~  210 (215)
                      .++.+  ...+.+.|+|+.+++..+.....+   .+...+-+..  .++.| ++..++.+...+||||++||..|+..+.
T Consensus       202 ~~~~~~~~~~~~Giyi~~~~~l~~l~~~~~~~~~~~~l~d~i~~--l~~~~-~v~~~~~~~~w~dIgt~~dl~~a~~~~~  278 (297)
T 2ux8_A          202 APGTAPSNLSVIGRYILQPEVMRILENQGKGAGGEIQLTDAMQR--MIGDQ-PFHGVTFQGTRYDCGDKAGFIQANLAVA  278 (297)
T ss_dssp             -------CCCEEEEEEECTHHHHHHHHTC--------CCTTGGG--GTTTS-CEEEEECSSEEEETTSHHHHHHHHHHHH
T ss_pred             CCCCCCccEEEEEEEEECHHHHHHHHhhCCCCCCeeEHHHHHHH--HHhcC-CEEEEEecceEEeCCCHHHHHHHHHHHH
Confidence            11122  345678899987765443322211   1111111111  22234 7888887767899999999999985554

>1jyk_A LICC protein, CTP:phosphocholine cytidylytransferase; 3D structure, CTP:phosphocholine cytidylyltransferase; 1.50A {Streptococcus pneumoniae} SCOP: c.68.1.13 PDB: 1jyl_A*

Probab=98.60  E-value=8.6e-08  Score=76.64  Aligned_cols=172  Identities=11%  Similarity=0.129  Sum_probs=98.9

Q ss_pred             CCCcEEEEcC--cHHHHHHHHHcCCeEEeCCCCCCCch-HHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHHHHc
Q 027992            9 LFCGLVVATD--DEKIAECCQQFGADVIMTSESCRNGT-ERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA   85 (215)
Q Consensus         9 ~~d~ivV~td--~~~i~~~~~~~g~~v~~~~~~~~~~~-~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~~~~   85 (215)
                      .+++|+|+|.  .+.+..+++.+|+.++..+.....|+ .++..++..+  + + ++++.||.|+.. +.+++++    +
T Consensus        70 g~~~i~vv~~~~~~~i~~~~~~~~~~iv~~~~~~~~g~~~al~~a~~~~--~-~-~lv~~~D~~~~~-~~~~~~~----~  140 (254)
T 1jyk_A           70 GINDIIIIVGYLKEQFDYLKEKYGVRLVFNDKYADYNNFYSLYLVKEEL--A-N-SYVIDADNYLFK-NMFRNDL----T  140 (254)
T ss_dssp             TCCCEEEEECTTGGGGTHHHHHHCCEEEECTTTTTSCTHHHHHTTGGGC--T-T-EEEEETTEEESS-CCCCSCC----C
T ss_pred             CCCeEEEEeCCcHHHHHHHHHhCCcEEEECCCccCCCcHHHHHHHHHHC--C-C-EEEEeCCcccCH-HHHHHHH----h
Confidence            4889999995  56677777778988765543222344 4666666555  2 4 678999999998 6554432    2


Q ss_pred             CCCceEEeecccCCCCccCCC-CceEEEEcCCCceecccCCCCCCCCCCCCCCCCCeeEEeeeeeechHHH---hhC-cC
Q 027992           86 APDAVFSTAVTSLKPEDAFDP-NRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFL---KIY-PG  160 (215)
Q Consensus        86 ~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~ip~~~~~~~~q~~p~~~~~~~~~~~~~~l---~~~-~~  160 (215)
                       .++++++.   ..     +| ..+.++.+++|.+..|.+.  +          -....+.+.|+|+.+.+   .++ ..
T Consensus       141 -~~~~~t~~---~~-----~~~~~~~v~~d~~g~v~~~~e~--~----------~~~~~~~Giy~~~~~~~~~l~~~l~~  199 (254)
T 1jyk_A          141 -RSTYFSVY---RE-----DCTNEWFLVYGDDYKVQDIIVD--S----------KAGRILSGVSFWDAPTAEKIVSFIDK  199 (254)
T ss_dssp             -SEEEEECE---ES-----SCSSCCEEEECTTCBEEEEECC--C----------SSEEBCCSEEEECHHHHHHHHHHHHH
T ss_pred             -CCceEEEE---cc-----cCCCCeEEEECCCCeEEEEEEC--C----------CCCcEEEEEEEEcHHHHHHHHHHHHH
Confidence             23444432   11     11 1233345677777655431  1          01345677788865421   111 10


Q ss_pred             -CCCCCCCCcc-chhh-hhhhhcCCeeEEEEec-CCCCCCCCHHHHHHHHHHHHhh
Q 027992          161 -LHPTPLQLEE-DLEQ-LKVLENGYKMKVIKVD-HEAHGVDAPEDVEKIESFMRER  212 (215)
Q Consensus       161 -~~~~~~~~~e-~l~~-~~~~~~g~~v~~~~~~-~~~idIdt~~Dl~~ae~il~~~  212 (215)
                       ...+  ...+ ++++ .+.+..|.++..+..+ ...++|||++||..|+.++++.
T Consensus       200 ~~~~~--~~~e~~~~d~~~~l~~~~~v~~~~~~~~~~~~Idt~edl~~a~~~l~~~  253 (254)
T 1jyk_A          200 AYVSG--EFVDLYWDNMVKDNIKELDVYVEELEGNSIYEIDSVQDYRKLEEILKNE  253 (254)
T ss_dssp             HHTTT--CCTTCCTTHHHHTTGGGCCEEEEECCTTSEEECCSHHHHHHHHHHHC--
T ss_pred             HHhcC--CccccCHHHHHHHHHhhCCeEEEEecCCeEEEcCCHHHHHHHHHHhhhc
Confidence             0101  0111 1222 2323356788888775 6899999999999999998764

>3brk_X Glucose-1-phosphate adenylyltransferase; ADP-glucose pyrophosphorylase, allostery, kinetics, structure-function relationships; 2.10A {Agrobacterium tumefaciens}

Probab=98.45  E-value=3.1e-06  Score=72.27  Aligned_cols=190  Identities=14%  Similarity=0.127  Sum_probs=106.9

Q ss_pred             CCCcEEEEcCc--HHHHHHHHH-cCCe-------E-EeCCC------CCCCch-HHHHHHHHHhcC-CCCEEEEecCCCC
Q 027992            9 LFCGLVVATDD--EKIAECCQQ-FGAD-------V-IMTSE------SCRNGT-ERCNEALQKLEK-KYDIVVNIQGDEP   69 (215)
Q Consensus         9 ~~d~ivV~td~--~~i~~~~~~-~g~~-------v-~~~~~------~~~~~~-~~i~~~l~~~~~-~~d~v~~~~~d~P   69 (215)
                      .+++|+|+|..  +++.+.+.. +|..       + +..+.      .+..|+ .++++++..+.. ..+.++++.||. 
T Consensus        58 gi~~i~vv~~~~~~~i~~~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~Gt~~al~~a~~~l~~~~~~~~lv~~~D~-  136 (420)
T 3brk_X           58 GIRRIGVATQYKAHSLIRHLQRGWDFFRPERNESFDILPASQRVSETQWYEGTADAVYQNIDIIEPYAPEYMVILAGDH-  136 (420)
T ss_dssp             TCCEEEEEECTTCHHHHHHHHHHSCCCCGGGTCEEEEECCC-------CCCCHHHHHHTTHHHHHHHCCSEEEEEESSC-
T ss_pred             CCCeEEEEeCCChHHHHHHHhhhhccccccccCCEEEeCccccccCCccccCCHHHHHHHHHHHHhcCCCEEEEecccE-
Confidence            58999999965  778777665 5532       3 22211      111354 467777776632 357899999999 


Q ss_pred             CCCHHHHHHHHHHHHc-CCCceEEeecccCCCCccCCCCc-eEEEEcCCCceecccCCCCCCCCCCCCCCCCC--eeEEe
Q 027992           70 LIEPEIIDGVVKALQA-APDAVFSTAVTSLKPEDAFDPNR-VKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFP--YLLHL  145 (215)
Q Consensus        70 li~~~~i~~~i~~~~~-~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~ip~~~~~~~~q~~p--~~~~~  145 (215)
                      + ...+++++++.+++ +.+..+++...+..     ++.. ..+..+++|.+..|.+.+.+.    ..+|+.+  ...+.
T Consensus       137 ~-~~~~l~~l~~~~~~~~~~~tl~~~~~~~~-----~~~~~g~v~~d~~g~v~~~~ekp~~~----~~~~~~~~~~~~~~  206 (420)
T 3brk_X          137 I-YKMDYEYMLQQHVDSGADVTIGCLEVPRM-----EATGFGVMHVNEKDEIIDFIEKPADP----PGIPGNEGFALASM  206 (420)
T ss_dssp             E-ECBCTHHHHHHHHHTTCSEEEEEEEEETT-----GGGGSEEEEECTTSBEEEEEESCSSC----CCBTTBTTEEEEEE
T ss_pred             E-EchHHHHHHHHHHHcCCeEEEEEeecCcc-----ccCcccEEEECCCCcEEEeEeCCCcc----ccccccccceEEee
Confidence            4 45679999998864 33433433222111     1112 223346677776664432110    1223333  45677


Q ss_pred             eeeeechHHHhhC-cCCCCCCCCCccch--hhh-hhhhcCCeeEEEEe-----------cCCCCCCCCHHHHHHHHHHHH
Q 027992          146 GIQSYDSNFLKIY-PGLHPTPLQLEEDL--EQL-KVLENGYKMKVIKV-----------DHEAHGVDAPEDVEKIESFMR  210 (215)
Q Consensus       146 ~~~~~~~~~l~~~-~~~~~~~~~~~e~l--~~~-~~~~~g~~v~~~~~-----------~~~~idIdt~~Dl~~ae~il~  210 (215)
                      +.|+|+.+.+.++ ....... ...+++  +.. .+++.| ++..+..           +...+||+|++||..|+..+.
T Consensus       207 Giy~~~~~~l~~~l~~~~~~~-~~~~~~~~d~l~~li~~g-~v~~~~~~~~~~~~~~~~~~~~~dI~t~~d~~~a~~~ll  284 (420)
T 3brk_X          207 GIYVFHTKFLMEAVRRDAADP-TSSRDFGKDIIPYIVEHG-KAVAHRFADSCVRSDFEHEPYWRDVGTIDAYWQANIDLT  284 (420)
T ss_dssp             EEEEEEHHHHHHHHTSSCCC-----------CTTHHHHHS-CEEEEEHHHHBCCCTTCSSCCEECCCSHHHHHHHHHHTT
T ss_pred             eeEEEeHHHHHHHHHHhcccC-CccccchHHHHHHHhhhC-cEEEEEeccccccccccCCCEEEECCCHHHHHHHHHHHh
Confidence            8899988766432 2221110 001111  111 233345 7877776           567899999999999988765


Q ss_pred             h
Q 027992          211 E  211 (215)
Q Consensus       211 ~  211 (215)
                      .
T Consensus       285 ~  285 (420)
T 3brk_X          285 D  285 (420)
T ss_dssp             S
T ss_pred             C
Confidence            3

>1tzf_A Glucose-1-phosphate cytidylyltransferase; nucleotidyltransferase, mixed alpha/beta fold; HET: C5G; 2.10A {Salmonella enterica subsp} SCOP: c.68.1.13 PDB: 1wvc_A*

Probab=98.40  E-value=4.3e-06  Score=66.44  Aligned_cols=176  Identities=12%  Similarity=0.118  Sum_probs=102.5

Q ss_pred             CCCcEEEEc--CcHHHHHHHHHc-----CCeE--------EeCCC-----------CCCCchH-HHHHHHHHhcCCCCEE
Q 027992            9 LFCGLVVAT--DDEKIAECCQQF-----GADV--------IMTSE-----------SCRNGTE-RCNEALQKLEKKYDIV   61 (215)
Q Consensus         9 ~~d~ivV~t--d~~~i~~~~~~~-----g~~v--------~~~~~-----------~~~~~~~-~i~~~l~~~~~~~d~v   61 (215)
                      .+++|+|+|  +.+.+.+.+.++     ++.+        +.++.           ....|+. +++.|+..+. ..+.+
T Consensus        47 g~~~i~vv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~gt~~al~~a~~~~~-~~~~~  125 (259)
T 1tzf_A           47 GIKDFIICCGYKGYVIKEYFANYFLHMSDVTFHMAENRMEVHHKRVEPWNVTLVDTGDSSMTGGRLKRVAEYVK-DDEAF  125 (259)
T ss_dssp             TCCEEEEEECTTHHHHHHHHHTHHHHHSCEEEEGGGTEEEETTCCCCCCEEEEEECCSSCCHHHHHHHTGGGTT-TSSCE
T ss_pred             CCCEEEEEcccCHHHHHHHHhhcccccccccccccccceeeeeccccccceeeeecccccCcHHHHHHHHHhcC-CCCcE
Confidence            489999999  567787777653     3332        22211           1123554 5677766663 34678


Q ss_pred             EEecCCCCCCCHHHHHHHHHHHHcCCCceEEeecccCCCCccCCCCce-EEEEcCCCceecccCCCCCCCCCCCCCCCCC
Q 027992           62 VNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRV-KCVVDNHGYAIYFSRGLIPYNKSGKVNPQFP  140 (215)
Q Consensus        62 ~~~~~d~Pli~~~~i~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~ip~~~~~~~~q~~p  140 (215)
                      +++.||. + .+.++.++++.+.+. ++.+++...+       +|... ++..+ +|.+..|.+.+.        ..  .
T Consensus       126 lv~~~D~-~-~~~~~~~~~~~~~~~-~~~~t~~~~~-------~~~~~g~v~~~-~g~v~~~~ekp~--------~~--~  184 (259)
T 1tzf_A          126 LFTYGDG-V-ADLDIKATIDFHKAH-GKKATLTATF-------PPGRFGALDIQ-AGQVRSFQEKPK--------GD--G  184 (259)
T ss_dssp             EEEETTE-E-ECCCHHHHHHHHHHH-CCSEEEEEEC-------CCCCSEEEEEE-TTEEEEEEESCS--------CC--S
T ss_pred             EEEECCE-e-cccCHHHHHHHHHHh-CCeEEEEEec-------CCCCccEEEEc-CCEEEEEEecCC--------CC--C
Confidence            8899998 3 467899999988642 2233332221       11222 23334 677665543211        00  1


Q ss_pred             eeEEeeeeeechHHHhhCcCCCCCCCCCccchhhhh-hhhcCCeeEEEEecCCCCCCCCHHHHHHHHHHHHhh
Q 027992          141 YLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLK-VLENGYKMKVIKVDHEAHGVDAPEDVEKIESFMRER  212 (215)
Q Consensus       141 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~l~~~~-~~~~g~~v~~~~~~~~~idIdt~~Dl~~ae~il~~~  212 (215)
                      ...+.+.|+|+.+.+..+..   .... .+ .+... .++.| ++..++.+....||||++|+..|+.++...
T Consensus       185 ~~~~~Giy~~~~~~l~~l~~---~~~~-~~-~~~i~~~~~~~-~v~~~~~~~~~~dI~t~~d~~~a~~~~~~~  251 (259)
T 1tzf_A          185 AMINGGFFVLNPSVIDLIDN---DATT-WE-QEPLMTLAQQG-ELMAFEHPGFWQPMDTLRDKVYLEGLWEKG  251 (259)
T ss_dssp             CCEECCCEEECGGGGGGCCS---TTCC-TT-THHHHHHHHTT-CEEEEEECSCEEECCSHHHHHHHHHHHHTT
T ss_pred             ceEEEEEEEeCHHHHHhhcc---cccc-cH-HHHHHHHHHcC-CEEEEEeCcEEEeCCCHHHHHHHHHHHhcC
Confidence            45677889998877644321   1100 10 11122 23345 677777777889999999999999988753

>3st8_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase, rossmann fold, LEFT-handed-beta-helix, cell shape; HET: COA GP1 UD1; 1.98A {Mycobacterium tuberculosis} PDB: 3spt_A* 3foq_A 3dk5_A 3d8v_A 3d98_A* 3dj4_A 2qkx_A*

Probab=98.37  E-value=1.4e-05  Score=69.73  Aligned_cols=193  Identities=19%  Similarity=0.247  Sum_probs=117.9

Q ss_pred             ccCCCCcEEEEcC--cHHHHHHH----HHcCCe--EEeCCCCCCCchH-HHHHHHHHhcC-CCCEEEEecCCCCCCCHHH
Q 027992            6 HSFLFCGLVVATD--DEKIAECC----QQFGAD--VIMTSESCRNGTE-RCNEALQKLEK-KYDIVVNIQGDEPLIEPEI   75 (215)
Q Consensus         6 ~~~~~d~ivV~td--~~~i~~~~----~~~g~~--v~~~~~~~~~~~~-~i~~~l~~~~~-~~d~v~~~~~d~Pli~~~~   75 (215)
                      ....+++|+|++.  .+.+.+..    ..+|..  ++.....  -|++ +++.++..+.. ..+.++++.+|.||++.+.
T Consensus        51 ~~~g~~~i~vv~~~~~~~i~~~~~~~~~~~~~~i~~~~q~~~--lGTa~Av~~a~~~l~~~~~~~~lvl~gd~~l~~~~~  128 (501)
T 3st8_A           51 AKLAPQRLIVVLGHDHQRIAPLVGELADTLGRTIDVALQDRP--LGTGHAVLCGLSALPDDYAGNVVVTSGDTPLLDADT  128 (501)
T ss_dssp             HHHCCSEEEEEECTTHHHHHHHHHHHHHHHTSCCEEEECSSC--CCHHHHHHHHHTTSCTTCCSEEEEEETTCTTCCHHH
T ss_pred             HhCCCCEEEEEeCCCHHHHHHHHHHHHHhcCCcEEEEEcCCC--CCcHHHHHHHHHHhccccccceeeecCcceeecHHH
Confidence            3446899999994  46666554    345554  4444434  3565 67788877753 3578999999999999999


Q ss_pred             HHHHHHHHHcCCCceEEeecccCCCCccCCCCc-eEEEEcCCCceecccCCCCCCCCCCCCCCCCCeeEEeeeeeechHH
Q 027992           76 IDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNR-VKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNF  154 (215)
Q Consensus        76 i~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~ip~~~~~~~~q~~p~~~~~~~~~~~~~~  154 (215)
                      +.++++..+.. ++.+++...+..     +|.. -++..+++|.+..+-+.+     +....|......+.+.|+|....
T Consensus       129 ~~~l~~~h~~~-~~~~ti~~~~~~-----dp~~yG~i~~~~~g~v~~ivEk~-----~~~~~~~~i~~in~Giy~f~~~~  197 (501)
T 3st8_A          129 LADLIATHRAV-SAAVTVLTTTLD-----DPFGYGRILRTQDHEVMAIVEQT-----DATPSQREIREVNAGVYAFDIAA  197 (501)
T ss_dssp             HHHHHHHHHHT-TCSEEEEEEECS-----CCTTSCEEEECTTCCEEEEECGG-----GCCHHHHHCCEEEEEEEEEEHHH
T ss_pred             HHHHHHHHhhc-cccceEeeeccC-----CchhccccccccceeEEeecccc-----CCChhhccceeeeceeeeecchh
Confidence            99999998753 333443334442     3333 244557777765442211     10011111145678889998877


Q ss_pred             HhhC-cCCCCCCCCCccc-hh-hhhhh-hcCCeeEEEEec--CCCCCCCCHHHHHHHHHHHHhh
Q 027992          155 LKIY-PGLHPTPLQLEED-LE-QLKVL-ENGYKMKVIKVD--HEAHGVDAPEDVEKIESFMRER  212 (215)
Q Consensus       155 l~~~-~~~~~~~~~~~e~-l~-~~~~~-~~g~~v~~~~~~--~~~idIdt~~Dl~~ae~il~~~  212 (215)
                      |..+ ..+... ..+.|+ +. ...++ ..|..+..+..+  .....+++..++..++..+..+
T Consensus       198 l~~~l~~l~~~-n~~~e~yltd~i~~~~~~g~~v~~~~~~~~~~~~g~n~~~~l~~~~~~~~~r  260 (501)
T 3st8_A          198 LRSALSRLSSN-NAQQELYLTDVIAILRSDGQTVHASHVDDSALVAGVNNRVQLAELASELNRR  260 (501)
T ss_dssp             HHHHHTTCCCC-STTCSCCTTHHHHHHHHTTCCEEEEECSSGGGGCCCSSHHHHHHHHHHHHHH
T ss_pred             HHHhhhhhccc-ccccccchhhHHHHHHhcCceEEEEeccchhhhcccccHHHHHHHHHHhhhh
Confidence            6654 232222 223333 43 22332 368888777764  5778899999999888877543

>3pnn_A Conserved domain protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE GOL; 1.90A {Porphyromonas gingivalis}

Probab=98.37  E-value=1.5e-05  Score=65.17  Aligned_cols=198  Identities=11%  Similarity=0.092  Sum_probs=107.9

Q ss_pred             CCCCcEEEEcCc---HHHHHHHHH---cCCe--EEeCCCC-------------CCCchH-HHHHHHHHhcCCCCEEEEec
Q 027992            8 FLFCGLVVATDD---EKIAECCQQ---FGAD--VIMTSES-------------CRNGTE-RCNEALQKLEKKYDIVVNIQ   65 (215)
Q Consensus         8 ~~~d~ivV~td~---~~i~~~~~~---~g~~--v~~~~~~-------------~~~~~~-~i~~~l~~~~~~~d~v~~~~   65 (215)
                      ..+++|+|+|..   +.+.+....   .+..  .+..+..             ...|+. ++..+...+  + +-++++.
T Consensus        46 ~~~~~i~vv~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Gt~~al~~a~~~i--~-~~~lV~~  122 (303)
T 3pnn_A           46 AGFGRLVFVIRHSFEKEFREKILTKYEGRIPVELVFQELDRLPEGFSCPEGREKPWGTNHAVLMGRDAI--R-EPFAVIN  122 (303)
T ss_dssp             HTCCEEEEEECGGGHHHHHHHTHHHHTTTSCEEEEECCTTCCCTTCCCCTTCCSCCCHHHHHHTTTTTC--C-SCEEEEE
T ss_pred             CCCCeEEEEcCchHHHHHHHHHHHHhccCCcEEEEecccccccccccccccccccCCcHHHHHHHHHhc--C-CCEEEEE
Confidence            358999999964   345544432   2333  3333210             123553 566665555  2 4577889


Q ss_pred             CCCCCCCHHHHHHHHHHHHcC--CCceEEeecccCCCCccCCCCc---eEEEEcCCCceecccCCCCCCCCCC------C
Q 027992           66 GDEPLIEPEIIDGVVKALQAA--PDAVFSTAVTSLKPEDAFDPNR---VKCVVDNHGYAIYFSRGLIPYNKSG------K  134 (215)
Q Consensus        66 ~d~Pli~~~~i~~~i~~~~~~--~~~~i~~~~~~~~~~~~~~~~~---~~~~~~~~g~~~~~~~~~ip~~~~~------~  134 (215)
                      ||. +++.+.++++++.+.++  .++.+++...+... +......   ..+..+++|.+..|.+.+.....+.      .
T Consensus       123 gD~-l~~~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~-~~~~~g~~~~G~v~~d~~g~v~~i~Ekp~~~~~~~~~~~~~~  200 (303)
T 3pnn_A          123 ADD-FYGRNGFEVLARKLMTLEGKQGEYCMVGYRVGN-TLSESGGVSRGVCQVDEKHLLTGVVERTGIERTDGTISFRDE  200 (303)
T ss_dssp             SSC-BCCHHHHHHHHHHHHTTTTCSSEEEEEEEEGGG-SCBTTBCEEEEEEEECTTSBEEEEEEEEEEEEETTEEEEECT
T ss_pred             CCe-ecCHHHHHHHHHHHHHhccccCceEEEEEECCC-ccCccCceeeeeEeeCCCCcEEEEEECCCCcccccccccccc
Confidence            999 78898999999988641  23444443333321 0000011   1334466787765543321000000      0


Q ss_pred             CCC----CCCeeEEeeeeeechHHHhhCcC--------CCCCCCCCccc-h-hhhh-hhhcCC-eeEEEEecCCCCCCCC
Q 027992          135 VNP----QFPYLLHLGIQSYDSNFLKIYPG--------LHPTPLQLEED-L-EQLK-VLENGY-KMKVIKVDHEAHGVDA  198 (215)
Q Consensus       135 ~~q----~~p~~~~~~~~~~~~~~l~~~~~--------~~~~~~~~~e~-l-~~~~-~~~~g~-~v~~~~~~~~~idIdt  198 (215)
                      ..+    ......+.+.|+|+.+.+.....        ...+  ...|. + +... .+..|. ++..++.+...+||+|
T Consensus       201 ~g~~~~~~~~~~i~~GiY~f~~~~~~~l~~~~~~~l~~~~~~--~~~e~~l~d~i~~li~~g~~~v~~~~~~g~w~dIgt  278 (303)
T 3pnn_A          201 TGKICTLAEDAPVSMNMWGFTPDYFDYSEELFINFLNAHGQE--PKSEFFIPFVVNDLIRSGRASVEVLDTTARWFGVTY  278 (303)
T ss_dssp             TSCEEEECTTCEEEEEEEEECTHHHHHHHHHHHHHHHHHTTC--SSCCCCHHHHHHHHHHHTSCEEEEEECSCCCBCCSS
T ss_pred             ccccccCCCCCEEEEEEEEECHHHHHHHHHHHHHHHHhcCCC--cCCcEEhHHHHHHHHHcCCCcEEEEEeCCceECCCC
Confidence            000    01246678889998766543321        1111  11222 2 2223 334576 8999888888999999


Q ss_pred             HHHHHHHHHHHHhh
Q 027992          199 PEDVEKIESFMRER  212 (215)
Q Consensus       199 ~~Dl~~ae~il~~~  212 (215)
                      ++|+..|++.++..
T Consensus       279 ~~dl~~a~~~l~~~  292 (303)
T 3pnn_A          279 SDDRPGVVAKLREL  292 (303)
T ss_dssp             GGGHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999998753

>2i5e_A Hypothetical protein MM_2497; APC86122, methanosarcina mazei GO1, hypothetic protein, STRU genomics, PSI-2, protein structure initiative; 2.10A {Methanosarcina mazei} SCOP: c.68.1.21

Probab=98.34  E-value=1e-06  Score=68.36  Aligned_cols=63  Identities=21%  Similarity=0.269  Sum_probs=48.7

Q ss_pred             CCCcE-EEEcCcHHHHHHHHHcCCeEEeCCCCCCCch-HHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHH
Q 027992            9 LFCGL-VVATDDEKIAECCQQFGADVIMTSESCRNGT-ERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVK   81 (215)
Q Consensus         9 ~~d~i-vV~td~~~i~~~~~~~g~~v~~~~~~~~~~~-~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~   81 (215)
                      .++.| +|+|+++++.+.   +|+.++..+    +|+ +++.+++..+   .+.++++.+|+|++++++|+++++
T Consensus        47 ~~~~v~vvv~~~~~~~~~---~~~~~v~~~----~gl~~sl~~a~~~~---~~~vlvi~~D~P~l~~~~i~~l~~  111 (211)
T 2i5e_A           47 GIEQVDILSPSVYGLEEM---TEARVLLDE----KDLNEALNRYLKEA---EEPVLIVMADLPLLSPEHIKEISS  111 (211)
T ss_dssp             TCSEEEEEESSCTTCSSC---CSSEEEECC----SCHHHHHHHHHHHC---CSCEEEECSCCTTCCHHHHHHHTT
T ss_pred             CCceEEEEEcCcHHHHhh---cCCEEEECC----CCHHHHHHHHHHhc---CCCEEEEcCCcCCCCHHHHHHHHc
Confidence            47889 999976554322   588876654    455 4788888775   478999999999999999999887

>2dpw_A Hypothetical protein TTHA0179; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 2.90A {Thermus thermophilus} SCOP: c.68.1.19

Probab=98.29  E-value=3.8e-06  Score=66.02  Aligned_cols=62  Identities=18%  Similarity=0.192  Sum_probs=44.3

Q ss_pred             cEEEEcCcHHHHHHHHHcCCeEEeCCCCCCCchHHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHHHH
Q 027992           12 GLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQ   84 (215)
Q Consensus        12 ~ivV~td~~~i~~~~~~~g~~v~~~~~~~~~~~~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~~~   84 (215)
                      +|+|++..+++.+.+   |+.+   + ...|...++..|+..+.   |.++++.||+||+++++++++++ +.
T Consensus        48 ~ivvv~~~~~i~~~~---~~~~---~-~~~g~~~~i~~a~~~~~---~~~lv~~~D~P~~~~~~i~~l~~-~~  109 (232)
T 2dpw_A           48 SPVYVGENPGLVPAP---ALTL---P-DRGGLLENLEQALEHVE---GRVLVATGDIPHLTEEAVRFVLD-KA  109 (232)
T ss_dssp             EEEEESCCSSCSSCC---SEEE---C-CCSSHHHHHHHHHHTCC---SEEEEEETTCTTCCHHHHHHHHH-HC
T ss_pred             EEEEEeChHHHhhhc---CeEe---c-CCCCHHHHHHHHHHHcC---CCEEEEeCCcccCCHHHHHHHHh-cC
Confidence            888888764443322   4443   2 22233457888888773   89999999999999999999999 53

>2x65_A Mannose-1-phosphate guanylyltransferase; nucleotidyltransferase; HET: M1P; 2.10A {Thermotoga maritima} PDB: 2x5z_A* 2x60_A* 2x5s_A*

Probab=98.09  E-value=1.7e-05  Score=65.91  Aligned_cols=186  Identities=15%  Similarity=0.180  Sum_probs=99.1

Q ss_pred             cCCCCcEEEEcCcHH---HHHHHHHcC-CeEEeCCCCCCCchH-HHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHH
Q 027992            7 SFLFCGLVVATDDEK---IAECCQQFG-ADVIMTSESCRNGTE-RCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVK   81 (215)
Q Consensus         7 ~~~~d~ivV~td~~~---i~~~~~~~g-~~v~~~~~~~~~~~~-~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~   81 (215)
                      +..+++|+|+|+.+.   +.+.+...+ ..++..+..  .|++ .+..+...+ ...+.++++.||.|+..++.+.++++
T Consensus        47 ~~~~~~iivvt~~~~~~~i~~~l~~~~~~~ii~e~~~--~gta~ai~~a~~~~-~~~~~~lvl~~D~~~~~~~~~~~~l~  123 (336)
T 2x65_A           47 EMDPKDVIVVTHKDYVERTKKELPELPDENIIAEPMK--KNTAPACFIGTKLA-DDDEPVLVLPADHRIPDTKKFWKTVK  123 (336)
T ss_dssp             TCCGGGEEEEEEGGGHHHHHHHCTTSCGGGEEEESSC--CCHHHHHHHHHTTS-CTTCEEEEEETTCBCCCHHHHHHHHH
T ss_pred             cCCCCcEEEEcChHHHHHHHHHhhccccceEEeCCCC--CCcHHHHHHHHHhh-CCCCEEEEEcCCceeccHHHHHHHHH
Confidence            346889999997653   333333322 245555533  4555 456565544 23578999999999999998877776


Q ss_pred             HH----HcCCCceEEeecccCCCCccCCCCceEEEEcCC-----CceecccCCCCCCCCCCCCCCC-C---CeeEEeeee
Q 027992           82 AL----QAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNH-----GYAIYFSRGLIPYNKSGKVNPQ-F---PYLLHLGIQ  148 (215)
Q Consensus        82 ~~----~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-----g~~~~~~~~~ip~~~~~~~~q~-~---p~~~~~~~~  148 (215)
                      .+    ++. +.++++...+..++    ...-++..+++     +.+..|.+.+..     ...|. +   .+..+.+.|
T Consensus       124 ~~~~~~~~~-~~~vt~~i~p~~~~----~~yG~I~~~~~~~~~~~~V~~f~EKp~~-----~~a~~~~~~g~y~~n~Giy  193 (336)
T 2x65_A          124 KALDALEKY-DGLFTFGIVPTRPE----TGYGYIEIGEELEEGVHKVAQFREKPDL-----ETAKKFVESGRFLWNSGMF  193 (336)
T ss_dssp             HHHHHHHHH-CSEEEEEECCCSCC----SSSEEEEEEEEEETTEEEEEEEEESCCH-----HHHHHHHHHTCEEEEEEEE
T ss_pred             HHHHHHHhc-CCeEEEEeecccCC----CCceEEEECCccCCCccEEEEEEECCCh-----HHHHHHHhcCCeEEEeeeE
Confidence            64    331 34444433333210    01112222222     344444332210     00110 0   156678889


Q ss_pred             eechHHH-hhCcCCCCCCCC-------Cccc-----hhhh-------hhhhcCCeeEEEEecCCCCCCCCHHHHHHH
Q 027992          149 SYDSNFL-KIYPGLHPTPLQ-------LEED-----LEQL-------KVLENGYKMKVIKVDHEAHGVDAPEDVEKI  205 (215)
Q Consensus       149 ~~~~~~l-~~~~~~~~~~~~-------~~e~-----l~~~-------~~~~~g~~v~~~~~~~~~idIdt~~Dl~~a  205 (215)
                      +|+.+.+ ..+..+.+..++       ..|.     +...       .+++.+.++.+++.+....||+|++|+..+
T Consensus       194 ~~~~~~ll~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~sidy~vme~~~~v~v~~~~~~W~DiGt~~~l~~~  270 (336)
T 2x65_A          194 LWKAREFIEEVKVCEPSIYENLKDVDPRNFEELKKAYEKVPSISVDYAVMEKSKKVRVVKADFEWSDLGNWSSVREI  270 (336)
T ss_dssp             EEEHHHHHHHHHHHCHHHHHHHTTCCTTCHHHHHHHHHHSCCCCHHHHTTTTCSCEEEEECSSCCBCCCSHHHHHHH
T ss_pred             EEEHHHHHHHHHHHCHHHHHHHHHhhhhhhhHHHHHHHhCccccHHHHHhcCCCeEEEEEecCCCcCCCCHHHHHhh
Confidence            9987654 222211111000       0000     0110       244567789888888888999999999877

>1e5k_A Molybdopterin-guanine dinucleotide biosynthesis protein A; molybdopterin nucleotidyl-transferase,; HET: CIT; 1.35A {Escherichia coli} SCOP: c.68.1.8 PDB: 1h4e_A* 1hjl_A* 1hjj_A* 1h4c_A* 1h4d_A* 1fr9_A 1frw_A*

Probab=98.00  E-value=2.5e-05  Score=60.00  Aligned_cols=70  Identities=17%  Similarity=0.153  Sum_probs=51.9

Q ss_pred             CCCcEEEEcCcHHHHHHHHHcCCeEEeCCCCC-CCchHHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHH
Q 027992            9 LFCGLVVATDDEKIAECCQQFGADVIMTSESC-RNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKA   82 (215)
Q Consensus         9 ~~d~ivV~td~~~i~~~~~~~g~~v~~~~~~~-~~~~~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~   82 (215)
                      .+++|+|+|+.+. ..+ .++|+.++..+..- .|...+++.|+..+  ..|.++++.||+||++++.|+++++.
T Consensus        46 ~~~~ivvv~~~~~-~~~-~~~~~~~v~~~~~~~~G~~~si~~~l~~~--~~~~vlv~~~D~P~i~~~~i~~l~~~  116 (201)
T 1e5k_A           46 QLSHVVVNANRHQ-EIY-QASGLKVIEDSLADYPGPLAGMLSVMQQE--AGEWFLFCPCDTPYIPPDLAARLNHQ  116 (201)
T ss_dssp             HCSCEEEECSSSH-HHH-HTTSCCEECCCTTCCCSHHHHHHHHHHHC--CSSEEEEEETTCTTCCTTHHHHHHHT
T ss_pred             hCCEEEEEcCCcH-HHH-hhcCCeEEecCCCCCCCHHHHHHHHHHhC--CCCcEEEEeCCcCcCCHHHHHHHHhh
Confidence            4789999997654 222 45788776443221 23345788999887  46899999999999999999999886

>2cu2_A Putative mannose-1-phosphate guanylyl transferase; mannose-1-phosphate geranyltransferase, thermus thermophilus structural genomics; 2.20A {Thermus thermophilus} SCOP: b.81.4.1 c.68.1.20

Probab=97.99  E-value=1.7e-05  Score=65.93  Aligned_cols=189  Identities=11%  Similarity=0.069  Sum_probs=102.6

Q ss_pred             ccCCCCcEEEEcCcHHHHHHHHHcC-CeEEeCCCCCCCchH-HHHHHHHHhc--CCCCEEEEecCCCCCCCHHHHHHHHH
Q 027992            6 HSFLFCGLVVATDDEKIAECCQQFG-ADVIMTSESCRNGTE-RCNEALQKLE--KKYDIVVNIQGDEPLIEPEIIDGVVK   81 (215)
Q Consensus         6 ~~~~~d~ivV~td~~~i~~~~~~~g-~~v~~~~~~~~~~~~-~i~~~l~~~~--~~~d~v~~~~~d~Pli~~~~i~~~i~   81 (215)
                      .+..+++|+|+|+.+....+.++++ ..++..+.  ..|++ .+..+.. +.  ...+.++++.||.|+.+++.+..+++
T Consensus        47 ~~~~~~~iiVvt~~~~~~~i~~~l~~~~~i~e~~--~~gta~ai~~a~~-l~~~~~~~~~lvl~~D~~~~~~~~~~~~l~  123 (337)
T 2cu2_A           47 PLVPPERTLLAVRRDQEAVARPYADGIRLLLEPL--GRDTAGAVLLGVA-EALKEGAERLLVLPADHYVGDDEAYREALA  123 (337)
T ss_dssp             TTSCGGGEEEEEEGGGHHHHGGGCSSSEEEEESS--CCHHHHHHHHHHH-HHHHHTCSEEEEEESSCEESCHHHHHHHHH
T ss_pred             CcCCCCCEEEEcChHHHHHHHHHhccCceEecCC--CCCcHHHHHHHHH-HhccCCCCEEEEEECCccCCCHHHHHHHHH
Confidence            3336789999998765444445544 23333443  24665 3554444 31  13578999999999999999998888


Q ss_pred             HHH--cCCCceEEeecccCCCCccCCCCceEEEEcCC----CceecccCCCCCCCCCCCCCCCC---CeeEEeeeeeech
Q 027992           82 ALQ--AAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNH----GYAIYFSRGLIPYNKSGKVNPQF---PYLLHLGIQSYDS  152 (215)
Q Consensus        82 ~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~----g~~~~~~~~~ip~~~~~~~~q~~---p~~~~~~~~~~~~  152 (215)
                      .+.  ...+.++++...+..++.    ..-++..+++    +.+..|.+.+..     ...|+.   .+..+.+.|+|+.
T Consensus       124 ~~~~~~~~~~~vt~~i~p~~~~t----~yG~I~~~~~~~~~~~V~~f~EKp~~-----~~a~~~~~~g~~~n~Giy~f~~  194 (337)
T 2cu2_A          124 TMLEAAEEGFVVALGLRPTRPET----EYGYIRLGPREGAWYRGEGFVEKPSY-----AEALEYIRKGYVWNGGVFAFAP  194 (337)
T ss_dssp             HHHHHCCTTCEEEEEECCSSCCS----SSCEEEEEEEETTEEEEEEEECCCCH-----HHHHHHHHTTCEEEEEEEEECH
T ss_pred             HHHHHHHcCCeEEEeeccCCCCC----CceEEEECCcccccCeEEEEEeCCCh-----HHHHHHhhcCCEEEEEEEEEeH
Confidence            763  112455554433432110    1112222322    445444332110     001110   1466788899987


Q ss_pred             HHH-hhCcCCCCCCCCCc----------cchhhh-------hhhhcCCeeEEEEecCCCCCCCCHHHHHHHH
Q 027992          153 NFL-KIYPGLHPTPLQLE----------EDLEQL-------KVLENGYKMKVIKVDHEAHGVDAPEDVEKIE  206 (215)
Q Consensus       153 ~~l-~~~~~~~~~~~~~~----------e~l~~~-------~~~~~g~~v~~~~~~~~~idIdt~~Dl~~ae  206 (215)
                      +.+ ..+..+.+...+..          +.+...       .+++.|.++.+++.+....||+|++|+..+.
T Consensus       195 ~~ll~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~sidy~vme~~~~v~v~~~~~~W~DvGt~~~l~~~~  266 (337)
T 2cu2_A          195 ATMAELFRRHLPSHHEALERLLAGASLEEVYAGLPKISIDYGVMEKAERVRVVLGRFPWDDVGNWRALERVF  266 (337)
T ss_dssp             HHHHHHHHHHCHHHHHHHHHHHTTCCHHHHHHTSCCCCHHHHTGGGCSSEEEEEECSCEECCCSTTHHHHHH
T ss_pred             HHHHHHHHHHCHHHHHHHHHHhcCCcHHHHHhhCccchHHHHHhhCCCcEEEEEeCCcEEcCCCHHHHHHHh
Confidence            654 33322111100000          001111       2455678898888888889999999997763

>2xme_A CTP-inositol-1-phosphate cytidylyltransferase; CDP-inositol, DI-MYO-inositol phosphate; 1.89A {Archaeoglobus fulgidus} PDB: 2xmh_A*

Probab=97.96  E-value=6.4e-06  Score=64.54  Aligned_cols=169  Identities=17%  Similarity=0.196  Sum_probs=79.8

Q ss_pred             CCcEEEEc-CcHHHHHH-HHHcCCeE-EeCCCCCCCc-hHHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHHHHc
Q 027992           10 FCGLVVAT-DDEKIAEC-CQQFGADV-IMTSESCRNG-TERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA   85 (215)
Q Consensus        10 ~d~ivV~t-d~~~i~~~-~~~~g~~v-~~~~~~~~~~-~~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~~~~   85 (215)
                      +++|+|+| +.+++.+. ++++|..+ +........| ..+++.|+..+.   +.++++.||.|+ +++.++++++.   
T Consensus        59 ~~~i~vv~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~i~~a~~~~~---~~~lv~~~D~p~-~~~~~~~l~~~---  131 (232)
T 2xme_A           59 VSEFIIVASRYADDIDAFLKDKGFNYKIVRHDRPEKGNGYSLLVAKNHVE---DRFILTMGDHVY-SQQFIEKAVRG---  131 (232)
T ss_dssp             EEEEEEEESTTHHHHHHHHTTSCCCEEEEECSCGGGCHHHHHHTTGGGCC---SSEEEEETTEEE-CHHHHHHHTTC---
T ss_pred             CCEEEEEeCChHHHHHHHHHhcCCcEEEEECCCCCCCcHHHHHHHHHHCC---CCEEEEcCCccc-CHHHHHHHHhC---
Confidence            78999998 44566554 55566433 2232232223 456778877763   346778999998 99988876652   


Q ss_pred             CCCceEEeecccCCCCccCCCCceEEEEcCCCceecccCCCCCCCCCCCCCCCCCeeEEeeeeeechHHHhhCcCCCCCC
Q 027992           86 APDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTP  165 (215)
Q Consensus        86 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ip~~~~~~~~q~~p~~~~~~~~~~~~~~l~~~~~~~~~~  165 (215)
                       .+ . .+.... ...+  ..+..++..+ +|.+..+.+.. +       +   ....+.+.|+|....+..........
T Consensus       132 -~~-~-~~~~~~-~~~~--~~~~~~v~~~-~g~v~~~~~~~-~-------~---~~~~~~g~~~~~~~~~~~l~~~~~~g  193 (232)
T 2xme_A          132 -EG-V-IADREP-RFVD--IGEATKIRVE-DGRVAKIGKDL-R-------E---FDCVDTGFFVLDDSIFEHAEKLRDRE  193 (232)
T ss_dssp             -CE-E-EEESSC-SSSC--TTTSCEEEEE-TTEEEEEETTC-S-------S---CSEEEEEEEEECTTHHHHHGGGTTSS
T ss_pred             -CC-c-EEEccc-cccC--CCcceEEEEc-CCEEEEeecCC-C-------C---cceEEEEEEEECHHHHHHHHHHHhcC
Confidence             12 1 111111 0000  0133344333 56554443321 1       0   02335666888776554332211110


Q ss_pred             CCCccchhhhhhhhcCCeeEEEEec-CCCCCCCCHHHHHHHHHHH
Q 027992          166 LQLEEDLEQLKVLENGYKMKVIKVD-HEAHGVDAPEDVEKIESFM  209 (215)
Q Consensus       166 ~~~~e~l~~~~~~~~g~~v~~~~~~-~~~idIdt~~Dl~~ae~il  209 (215)
                         ...+.  .+++.+ .+..+..+ ...+|||||+||..|+.++
T Consensus       194 ---~~~l~--~ll~~~-~v~~~~~~~~~~~dI~tpeDl~~a~~~l  232 (232)
T 2xme_A          194 ---EIPLS--EIVKLA-RLPVTYVDGELWMDVDTKEDVRRANRAL  232 (232)
T ss_dssp             ---CCCHH--HHHHHH-TCBEEECCSCCEEEEECC----------
T ss_pred             ---hhHHH--HHHHcC-CEEEEEECCCCEEeCCCHHHHHHHHhhC
Confidence               11121  233333 34455543 5679999999999998764

>1yp2_A Glucose-1-phosphate adenylyltransferase small subunit; ADP-glucose synthase, ADP-glucose pyrophosphorylase, agpase B; HET: PMB; 2.11A {Solanum tuberosum} SCOP: b.81.1.4 c.68.1.6 PDB: 1yp3_A* 1yp4_A*

Probab=97.96  E-value=0.00013  Score=62.74  Aligned_cols=198  Identities=13%  Similarity=0.131  Sum_probs=107.6

Q ss_pred             CCCCcEEEEcCc--HHHHHHHHH-cC--C---------eEEe---CC--CCCCCch-HHHHHHHHHhcC-CCCEEEEecC
Q 027992            8 FLFCGLVVATDD--EKIAECCQQ-FG--A---------DVIM---TS--ESCRNGT-ERCNEALQKLEK-KYDIVVNIQG   66 (215)
Q Consensus         8 ~~~d~ivV~td~--~~i~~~~~~-~g--~---------~v~~---~~--~~~~~~~-~~i~~~l~~~~~-~~d~v~~~~~   66 (215)
                      ..+++|+|+|..  +.+.+.+.+ +|  .         .++.   .+  +++..|+ .+++.++..+.. ..+.++++.|
T Consensus        65 ~g~~~i~vv~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~Gt~~al~~a~~~~~~~~~~~~lv~~~  144 (451)
T 1yp2_A           65 SNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPDWFQGTADAVRQYLWLFEEHTVLEYLILAG  144 (451)
T ss_dssp             TTCCEEEEEESCCCHHHHHHHHHHCC--------CCEEEEEESCSSTTSCCCCCSHHHHHHHTHHHHTTSCCSEEEEECS
T ss_pred             CCCCEEEEEeccCHHHHHHHHhhhhhcccccccccCcEEEecccccccccccccCcHHHHHHHHHHHHhcCCCeEEEecC
Confidence            358999999954  566655543 32  2         2321   11  1223455 467888877742 3588999999


Q ss_pred             CCCCCCHHHHHHHHHHHHcCCCceEEeecccCCCCccCCCCceEEEEcCCCceecccCCCCCCCCCC--CC----C----
Q 027992           67 DEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSG--KV----N----  136 (215)
Q Consensus        67 d~Pli~~~~i~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ip~~~~~--~~----~----  136 (215)
                      |. +. ..++.++++.+++. ++.+++...+....+..  ..-.+..+++|.+..|.+.+.+.....  ..    .    
T Consensus       145 D~-~~-~~~l~~l~~~~~~~-~~~~tl~~~~~~~~~~~--~~g~v~~d~~~~v~~~~ekp~~~~~~~~~~~~~~l~~~~~  219 (451)
T 1yp2_A          145 DH-LY-RMDYEKFIQAHRET-DADITVAALPMDEKRAT--AFGLMKIDEEGRIIEFAEKPQGEQLQAMKVDTTILGLDDK  219 (451)
T ss_dssp             CE-EC-CCCHHHHHHHHHHT-TCSEEEEEEEECHHHHT--TSEEEEECTTSBEEEEEESCCHHHHHHTCCCGGGGSCCHH
T ss_pred             cE-EE-cCCHHHHHHHHHHc-CCcEEEEEEEcChhhcc--cCCEEEECCCCCEEEEEECCCchhhccccccccccccccc
Confidence            99 54 45799999988643 33333322222100000  111233466677766644321100000  00    0    


Q ss_pred             --CCCCeeEEeeeeeechHHHhhC-cCCCCCCCCCccchhhhhhhhcCCeeEEEEecCCCCCCCCHHHHHHHHHHHHh
Q 027992          137 --PQFPYLLHLGIQSYDSNFLKIY-PGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAPEDVEKIESFMRE  211 (215)
Q Consensus       137 --q~~p~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~e~l~~~~~~~~g~~v~~~~~~~~~idIdt~~Dl~~ae~il~~  211 (215)
                        +......+.+.|+|+.+.+..+ ....+...+..+.+ ....+..|.++..++.+....||+|++|+..|+..+..
T Consensus       220 ~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~~~~~-l~~~i~~g~~v~~~~~~~~w~digt~~~l~~a~~~l~~  296 (451)
T 1yp2_A          220 RAKEMPFIASMGIYVISKDVMLNLLRDKFPGANDFGSEV-IPGATSLGMRVQAYLYDGYWEDIGTIEAFYNANLGITK  296 (451)
T ss_dssp             HHHHCCEEEEEEEEEEEHHHHHHHHHTTCTTCCCTTTTH-HHHHHHTTCCEEEEECCSCCEECSSHHHHHHHHHGGGC
T ss_pred             cccCCcceEEeeEEEEcHHHHHHHHHhhcccccchHhhH-HHHHHhcCCceEEEEeCCEEEECCCHHHHHHHHHHHhc
Confidence              0012456888899988766432 22211111222221 01233457889888877788999999999999877654

>4evw_A Nucleoside-diphosphate-sugar pyrophosphorylase; structural genomics, PSI-biology; HET: MSE; 1.90A {Vibrio cholerae}

Probab=97.77  E-value=0.00022  Score=56.77  Aligned_cols=175  Identities=11%  Similarity=0.128  Sum_probs=96.0

Q ss_pred             CCCCcEEEEcCc--H---HHHHHHHHcCC---eEEeCCCCCCCchH-HHHHHHHHhc----CCCCEEEEecCCCCCCCHH
Q 027992            8 FLFCGLVVATDD--E---KIAECCQQFGA---DVIMTSESCRNGTE-RCNEALQKLE----KKYDIVVNIQGDEPLIEPE   74 (215)
Q Consensus         8 ~~~d~ivV~td~--~---~i~~~~~~~g~---~v~~~~~~~~~~~~-~i~~~l~~~~----~~~d~v~~~~~d~Pli~~~   74 (215)
                      ..+++|+|++..  +   .+.+.++++|.   .++..+.. ..|+. +++.|+..+.    ...+.++++.||. +++..
T Consensus        44 ~gi~~iivv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Gt~~av~~a~~~l~~~~~~~~~~~lV~~gD~-l~~~~  121 (255)
T 4evw_A           44 FASTPFLFIVRNVYDTAVFVREKATQLGIKQFYIAELHTE-TRGQAETVTLGLEELAKQGVDYQGSITVFNIDT-FRPNF  121 (255)
T ss_dssp             TTTSCEEEEEESSTTHHHHHHHHHHHHTCSSEEEEEESSC-CSSHHHHHHHHHHHHHHTTCCCCSCEEECCTTE-ECTTC
T ss_pred             CCCceEEEEECchhhhHHHHHHHHHHcCCCCceEEEeCCC-CCCHHHHHHHHHHHHhhcccCCCCcEEEEeCCE-EEecc
Confidence            468898888732  2   34444555553   23333322 34554 7888888772    2345689999998 77544


Q ss_pred             HHHHHHHHHHcCCCceEEeecccCCCCccCCCCceEEEEcCCC--ceecccCCCCCCCCCCCCCCCCCeeEEeeeeeech
Q 027992           75 IIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHG--YAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDS  152 (215)
Q Consensus        75 ~i~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g--~~~~~~~~~ip~~~~~~~~q~~p~~~~~~~~~~~~  152 (215)
                      .+.+    +....++.+.+  .+..     +|..-.+..+++|  .+.-+.+..           ......+.+.|+|..
T Consensus       122 ~~~~----~~~~~~~~i~~--~~~~-----~p~yG~v~~d~~g~~~V~~i~EK~-----------~~s~~~~~GiY~f~~  179 (255)
T 4evw_A          122 VFPD----ISQHSDGYLEV--FQGG-----GDNWSFAKPEHAGSTKVIQTAEKN-----------PISDLCSTGLYHFNR  179 (255)
T ss_dssp             CCCG----GGGSSSEEEEE--EECC-----SSCSCEEEESSTTCCBEEEEESSS-----------CSSSEEEEEEEEESC
T ss_pred             hhHH----HhhcCCcEEEE--EecC-----CCceeEEEECCCCCeEEEEEEecc-----------CccCcEEEeEEEECc
Confidence            4433    23334544443  2332     2333334446666  655442211           111356778899976


Q ss_pred             H-HH----hhCcCCCCCCCC--Cccc-h-hhhh-hhhcCCeeEEEEec-CCCCCCCCHHHHHHHHHH
Q 027992          153 N-FL----KIYPGLHPTPLQ--LEED-L-EQLK-VLENGYKMKVIKVD-HEAHGVDAPEDVEKIESF  208 (215)
Q Consensus       153 ~-~l----~~~~~~~~~~~~--~~e~-l-~~~~-~~~~g~~v~~~~~~-~~~idIdt~~Dl~~ae~i  208 (215)
                      . .+    .++-  ......  ..|+ + +... ++..|.++..+..+ ...+||+|++|+..|+..
T Consensus       180 ~~~~~~~l~~~i--~~~~~~~~~gE~~ltd~i~~li~~g~~v~~~~~~~~~w~digt~~~l~~~~~~  244 (255)
T 4evw_A          180 KEDYLEAYREYV--ARPSQEWERGELYIAPLYNELIQKGLNIHYHLIARHEVIFCGVPDEYTDFLRQ  244 (255)
T ss_dssp             HHHHHHHHHHHH--TSCGGGCSCSCCCSTTHHHHHHHTTCCEEEEECCGGGCEECCSHHHHHHHHHC
T ss_pred             HHHHHHHHHHHH--hcccccccCCeEehHHHHHHHHHCCCEEEEEEeccccEEECCCHHHHHHHHhc
Confidence            4 22    1211  000000  1222 2 2223 33478889888874 789999999999999875

>2e8b_A Probable molybdopterin-guanine dinucleotide biosy protein A; putative protein, molybdenum cofactor, structural G NPPSFA; 1.61A {Aquifex aeolicus}

Probab=97.67  E-value=0.00016  Score=55.35  Aligned_cols=65  Identities=22%  Similarity=0.247  Sum_probs=49.0

Q ss_pred             CCcEEEEcCcHHHHHHHHHc-CCeEEeCCCCCCCchHHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHH-HH
Q 027992           10 FCGLVVATDDEKIAECCQQF-GADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDG-VV   80 (215)
Q Consensus        10 ~d~ivV~td~~~i~~~~~~~-g~~v~~~~~~~~~~~~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~-~i   80 (215)
                      +++|+|+|+++..    +.+ |+.++..+....|...+++.|+..+  ..|.++++.||+||++++.+++ ++
T Consensus        54 ~~~i~vv~~~~~~----~~~~~~~~v~~~~~~~g~~~~i~~al~~~--~~~~~lv~~~D~P~i~~~~i~~~l~  120 (201)
T 2e8b_A           54 FKEVYIVAKDREK----FSFLNAPVVLDEFEESASIIGLYTALKHA--KEENVFVLSGDLPLMKKETVLYVLE  120 (201)
T ss_dssp             CSEEEEEESCSGG----GGGGTCCEEECCCSSCCHHHHHHHHHHHC--SSSEEEEEETTCTTCCHHHHHHHHH
T ss_pred             CCEEEEEeCcHHH----hhcCCceEEecCCCCCCcHHHHHHHHHHc--CCCCEEEEeCCcCcCCHHHHHHHHh
Confidence            7899999976544    223 7777654433223445788998887  3689999999999999999999 87

>3cgx_A Putative nucleotide-diphospho-sugar transferase; YP_389115.1, joint center for structural genomics; 1.90A {Desulfovibrio desulfuricans subsp}

Probab=97.27  E-value=0.00049  Score=54.40  Aligned_cols=79  Identities=19%  Similarity=0.085  Sum_probs=52.0

Q ss_pred             CCCcEEEEcCc--HHH---HHHHHHcCCeEEeCCCCCCCchH-HHHHHHHHh-cCCCCEEEEecCCCCCCCHHHHHHHHH
Q 027992            9 LFCGLVVATDD--EKI---AECCQQFGADVIMTSESCRNGTE-RCNEALQKL-EKKYDIVVNIQGDEPLIEPEIIDGVVK   81 (215)
Q Consensus         9 ~~d~ivV~td~--~~i---~~~~~~~g~~v~~~~~~~~~~~~-~i~~~l~~~-~~~~d~v~~~~~d~Pli~~~~i~~~i~   81 (215)
                      ..+.++|+|.+  ..+   .... ..++.+..   +..+|++ ++.+|+..+ ....+.++++.+|+|++++++|+++++
T Consensus        51 ~~~~vvvvt~~~~~~~~~~~~~~-~~~~~~~~---q~~~gLg~rl~~a~~~~~~~~~~~vliigaD~P~L~~~~l~~a~~  126 (242)
T 3cgx_A           51 HADLHICYVPGDADLPEKFKAWL-GPQHMFAA---QQGLDLGERMKHAMQKAFDDGYDRVVLMGSDIPDYPCELVQKALN  126 (242)
T ss_dssp             SSEEEEEECCCCTTHHHHHHHHH-CTTSEEEE---CCSSSHHHHHHHHHHHHHHTTCSEEEEECSSCTTCCHHHHHHHHH
T ss_pred             CCCEEEEEcCCchhhhhhhhhhc-cCCcEEec---CCCCCHHHHHHHHHHHHHhCCCCeEEEEcCCCCCCCHHHHHHHHH
Confidence            35667777744  222   2222 22343332   3345665 788888875 346789999999999999999999998


Q ss_pred             HHHcCCCceEE
Q 027992           82 ALQAAPDAVFS   92 (215)
Q Consensus        82 ~~~~~~~~~i~   92 (215)
                      .+.. .+.+++
T Consensus       127 ~l~~-~d~Vig  136 (242)
T 3cgx_A          127 DLQH-YDAAIG  136 (242)
T ss_dssp             HTTT-CSEEEE
T ss_pred             Hhcc-CCeEEE
Confidence            8754 354443

>4hg6_A Cellulose synthase subunit A; membrane translocation, cellulose synthesis, UDP-GLC binding membrane, transferase; HET: BGC UDP LDA; 3.25A {Rhodobacter sphaeroides}

Probab=92.10  E-value=0.4  Score=44.12  Aligned_cols=64  Identities=19%  Similarity=0.350  Sum_probs=48.0

Q ss_pred             HHHHHHHcCCeEEeCCCCCCCchH-HHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHHHHcCCCc
Q 027992           22 IAECCQQFGADVIMTSESCRNGTE-RCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDA   89 (215)
Q Consensus        22 i~~~~~~~g~~v~~~~~~~~~~~~-~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~~~~~~~~   89 (215)
                      +++.++++++.++.++... +|.. ....|++..  ..|+|+++++|. ...++.+.++++.+.++++.
T Consensus       205 l~~~~~~~~v~~i~~~~~~-~GKa~alN~gl~~a--~gd~Il~lDaD~-~~~pd~L~~lv~~~~~dp~v  269 (802)
T 4hg6_A          205 LQQLCRELGVVYSTRERNE-HAKAGNMSAALERL--KGELVVVFDADH-VPSRDFLARTVGYFVEDPDL  269 (802)
T ss_dssp             HHHHHHHHTCEEEECSSCC-SHHHHHHHHHHHHC--CCSEEEECCTTE-EECTTHHHHHHHHHHHSSSC
T ss_pred             HHHHHHhcCcEEEEecCCC-CcchHHHHHHHHhc--CCCEEEEECCCC-CcChHHHHHHHHHHhcCCCe
Confidence            4556777898887666542 3444 567788776  679999999999 55899999999999655553

>3ckj_A Putative uncharacterized protein; mycobacteria, unknown function; HET: CIT; 1.80A {Mycobacterium paratuberculosis} PDB: 3ckn_A* 3cko_A* 3ckq_A* 3ckv_A* 3e26_A 3e25_A

Probab=90.47  E-value=1.3  Score=35.82  Aligned_cols=74  Identities=20%  Similarity=0.161  Sum_probs=53.0

Q ss_pred             CcEEEEcC--cHHHHHHHHHcCCeEEe-------CCCCCCCchH-HHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHH
Q 027992           11 CGLVVATD--DEKIAECCQQFGADVIM-------TSESCRNGTE-RCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVV   80 (215)
Q Consensus        11 d~ivV~td--~~~i~~~~~~~g~~v~~-------~~~~~~~~~~-~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i   80 (215)
                      .+|||+-|  .+...+++++++.++..       .+..  .|.+ ....|+...  ..|+|+++++|.-...++.|.+++
T Consensus        79 ~eiivVDdgS~D~t~~~~~~~~~~~~~~~~~~~~~~~n--~G~~~a~n~g~~~a--~gd~i~~lD~D~~~~~p~~l~~l~  154 (329)
T 3ckj_A           79 DELIVLDSGSTDDTEIRAVAAGARVVSREQALPEVPIR--PGKGEALWRSLAAS--RGDIVVFVDSDLINPHPMFVPWLV  154 (329)
T ss_dssp             SEEEEEECSCCSSHHHHHHHTTCEEEEHHHHCTTSCCC--CSHHHHHHHHHHHC--CCSEEEECCTTEESCCTTHHHHHH
T ss_pred             cEEEEEeCCCCchHHHHHHHhhhhhccceeeeccCCCC--CCHHHHHHHHHHhC--CCCEEEEECCCCCCcChHHHHHHH
Confidence            57777764  35566788888877533       2222  4544 456777766  569999999999878999999999


Q ss_pred             HHHHcCCC
Q 027992           81 KALQAAPD   88 (215)
Q Consensus        81 ~~~~~~~~   88 (215)
                      +.+.++++
T Consensus       155 ~~l~~~~~  162 (329)
T 3ckj_A          155 GPLLTGDG  162 (329)
T ss_dssp             HHHHSCSS
T ss_pred             HHHHhCCC
Confidence            99765444

>2bo4_A Mannosylglycerate synthase; catalysis, glycosyltransferase, mannose, transferase, stereoselectivity; HET: FLC; 1.95A {Rhodothermus marinus} SCOP: c.68.1.18 PDB: 2bo6_A 2bo7_A* 2bo8_A* 2xw2_A 2y4j_A 2xw3_A* 2xw4_A* 2xw5_A* 2y4k_A* 2y4l_A* 2y4m_A*

Probab=90.26  E-value=1.7  Score=36.54  Aligned_cols=79  Identities=18%  Similarity=0.194  Sum_probs=49.9

Q ss_pred             cEEEEcC--cHHHHHHHH--------HcCCeEEeC--C--CCCCCchH-HHHHHH----HHhcCCCCEEEEecCCCCCCC
Q 027992           12 GLVVATD--DEKIAECCQ--------QFGADVIMT--S--ESCRNGTE-RCNEAL----QKLEKKYDIVVNIQGDEPLIE   72 (215)
Q Consensus        12 ~ivV~td--~~~i~~~~~--------~~g~~v~~~--~--~~~~~~~~-~i~~~l----~~~~~~~d~v~~~~~d~Pli~   72 (215)
                      +|||+=|  .+...++++        +.|++++..  .  .....|.+ .+..|+    ...  ..|++++++||.=-..
T Consensus        30 EIIVVDDGStD~T~eia~~la~~~~~~~g~~vi~~~~~r~~~~n~GkG~Al~~G~~~Al~~a--~gd~vv~mDADlq~~~  107 (397)
T 2bo4_A           30 HEVLCIGYERDQTYEAVERAAPEISRATGTPVSVRLQERLGTLRPGKGDGMNTALRYFLEET--QWERIHFYDADITSFG  107 (397)
T ss_dssp             CEEEEEESSCCHHHHHHHHHHHHHHHHHSCCEEEEECCCCSSSSSSHHHHHHHHHHHHHHHC--CCSEEEECCTTCSSCC
T ss_pred             EEEEEECcCCccHHHHHHHhhhhcccccCCeEEEEecccCCCCCCCHHHHHHHHHHHHHHhC--CCCEEEEEcCCCCCCC
Confidence            5666653  233334444        457776421  1  10013544 578888    443  6799999999965468


Q ss_pred             HHHHHHHHHHHHcCCCceEE
Q 027992           73 PEIIDGVVKALQAAPDAVFS   92 (215)
Q Consensus        73 ~~~i~~~i~~~~~~~~~~i~   92 (215)
                      |+.|.++++.+.++.|.+++
T Consensus       108 P~~i~~Ll~~l~~g~D~V~g  127 (397)
T 2bo4_A          108 PDWITKAEEAADFGYGLVRH  127 (397)
T ss_dssp             HHHHHHHHHHHHTTCSEEEE
T ss_pred             HHHHHHHHHHHHcCCCEEEE
Confidence            99999999988765565554

>1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A*

Probab=90.19  E-value=1.6  Score=33.32  Aligned_cols=73  Identities=16%  Similarity=0.275  Sum_probs=49.9

Q ss_pred             cEEEEcC--cHHHHHHHHHc----CCeEEeCC--------CCCCCchH-HHHHHHHHhcCCCCEEEEecCCCCCCCHHHH
Q 027992           12 GLVVATD--DEKIAECCQQF----GADVIMTS--------ESCRNGTE-RCNEALQKLEKKYDIVVNIQGDEPLIEPEII   76 (215)
Q Consensus        12 ~ivV~td--~~~i~~~~~~~----g~~v~~~~--------~~~~~~~~-~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i   76 (215)
                      +|||+-|  .+...++++++    ++.++..+        ..  .|.+ ....|++..  ..|+|+++++|.-+ .++.|
T Consensus        32 eiivvDd~S~d~t~~~~~~~~~~~~i~~i~~~~~~~~~~~~n--~G~~~a~N~gi~~a--~g~~i~~lD~Dd~~-~~~~l  106 (255)
T 1qg8_A           32 ELFIMDDNSNEETLNVIRPFLNDNRVRFYQSDISGVKERTEK--TRYAALINQAIEMA--EGEYITYATDDNIY-MPDRL  106 (255)
T ss_dssp             EEEEEECSCCHHHHHHHGGGGGSTTEEEEECCCCSHHHHHSS--CHHHHHHHHHHHHC--CCSEEEEEETTEEE-CTTHH
T ss_pred             EEEEEECCCCchHHHHHHHHhhcCCEEEEecccccccccccc--cCHHHHHHHHHHHc--CCCEEEEeCCCCcc-ChHHH
Confidence            6777764  35556666665    45555554        23  4544 345677765  67999999999865 89999


Q ss_pred             HHHHHHHHcCCCc
Q 027992           77 DGVVKALQAAPDA   89 (215)
Q Consensus        77 ~~~i~~~~~~~~~   89 (215)
                      ..+++.+.++++.
T Consensus       107 ~~~~~~~~~~~~~  119 (255)
T 1qg8_A          107 LKMVRELDTHPEK  119 (255)
T ss_dssp             HHHHHHHHHCTTC
T ss_pred             HHHHHHHHhCCCc
Confidence            9999999765443

>3f1y_A Mannosyl-3-phosphoglycerate synthase; GT-A type glycosyltransferase, GT-81, mannosyl-3-phosphoglyc synthase, GDP-mannose, transferas; 2.20A {Rubrobacter xylanophilus} PDB: 3kia_A* 3o3p_A*

Probab=87.63  E-value=2.2  Score=35.69  Aligned_cols=78  Identities=24%  Similarity=0.345  Sum_probs=54.8

Q ss_pred             CCCcEEEEcCc--HHHHHHHHHcCCeEEeCCC-----CCCCchH-HHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHH
Q 027992            9 LFCGLVVATDD--EKIAECCQQFGADVIMTSE-----SCRNGTE-RCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVV   80 (215)
Q Consensus         9 ~~d~ivV~td~--~~i~~~~~~~g~~v~~~~~-----~~~~~~~-~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i   80 (215)
                      ...+|+|+-|.  +...+++++++.+++.+..     .-..|.+ .+..|+...  ..|+|+++++|.=...|+.|.+++
T Consensus       125 ~~~EIIVVDDgStD~T~~i~~~~~~~v~~~~~~~i~~~~n~G~g~A~n~G~~~A--~gd~i~~lDaD~~~~~p~~L~~l~  202 (387)
T 3f1y_A          125 LIDQILVVDADSEDGTAGVAASHGAEVYSENELMSGYGDAHGKGDAMWRALSVT--RGDLVLYIDADTRDFRPQLAYGVL  202 (387)
T ss_dssp             CCSEEEEEECSCSSSHHHHHHHTTCEEEEGGGTTGGGCSCCSHHHHHHHHTTTC--CSSEEEECCTTCSSCCTHHHHTTH
T ss_pred             CCeEEEEEcCcCCccHHHHHHHhCchhcccceeEecCCccCCHHHHHHHHHHhc--CCCEEEEEcCCCCcCCHHHHHHHH
Confidence            34578877752  5567788888888653210     0113444 456676665  579999999999878999999999


Q ss_pred             HHHHcCCC
Q 027992           81 KALQAAPD   88 (215)
Q Consensus        81 ~~~~~~~~   88 (215)
                      +.+.++++
T Consensus       203 ~~l~~~p~  210 (387)
T 3f1y_A          203 GPVLEVPG  210 (387)
T ss_dssp             HHHHHSTT
T ss_pred             HHHHHCCC
Confidence            99965433

>3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis}

Probab=85.67  E-value=6.8  Score=29.33  Aligned_cols=72  Identities=18%  Similarity=0.343  Sum_probs=46.1

Q ss_pred             cEEEEcCc--H----HHHHHHHHc-CCeEEeCCCCCCCchH-HHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHHH
Q 027992           12 GLVVATDD--E----KIAECCQQF-GADVIMTSESCRNGTE-RCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKAL   83 (215)
Q Consensus        12 ~ivV~td~--~----~i~~~~~~~-g~~v~~~~~~~~~~~~-~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~~   83 (215)
                      +|||+-|.  +    .++++++++ .+.++ +.+.  .|.+ ....|++..  ..|+|+++++|. .+.++.|..+++.+
T Consensus        36 eiIvvDd~S~d~t~~~~~~~~~~~~~i~~i-~~~n--~G~~~a~N~g~~~a--~g~~i~~lD~Dd-~~~~~~l~~l~~~~  109 (240)
T 3bcv_A           36 EIILIDDESPDNCPKICDDYAAQYPNIKVI-HKKN--AGLGMACNSGLDVA--TGEYVAFCDSDD-YVDSDMYMTMYNVA  109 (240)
T ss_dssp             EEEEEECCCSSSHHHHHHHHHHHCSSEEEE-ECCC--CCHHHHHHHHHHHC--CSSEEEECCTTC-CCCTTHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHhhCCCEEEE-ECCC--CChHHHHHHHHHHc--CCCEEEEECCCC-cCCHHHHHHHHHHH
Confidence            57776542  2    233444444 34444 3433  4554 456677766  569999999997 56899999999999


Q ss_pred             Hc-CCCc
Q 027992           84 QA-APDA   89 (215)
Q Consensus        84 ~~-~~~~   89 (215)
                      .+ +.+.
T Consensus       110 ~~~~~~~  116 (240)
T 3bcv_A          110 QKYTCDA  116 (240)
T ss_dssp             HHHTCSE
T ss_pred             HhcCCCE
Confidence            75 4443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	215
d1vica_	255	c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic ac	7e-28
d1vh1a_	246	c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic ac	2e-26
d1h7ea_	245	c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic ac	4e-26
d2dpwa1	231	c.68.1.19 (A:1-231) Uncharacterized protein TTHA01	3e-24
d1g97a2	250	c.68.1.5 (A:2-251) N-acetylglucosamine 1-phosphate	7e-06

>d1vica_ c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase {Haemophilus influenzae [TaxId: 727]} Length = 255

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase
species: Haemophilus influenzae [TaxId: 727]

 Score =  103 bits (258), Expect = 7e-28
 Identities = 84/208 (40%), Positives = 118/208 (56%), Gaps = 10/208 (4%)

Query: 14  VVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDI-VVNIQGDEPLIE 72
           ++ATD+E +A+  + FGA+V MTS +  +GTER  E ++KL    +  +VNIQGDEPLI 
Sbjct: 45  IIATDNENVADVAKSFGAEVCMTSVNHNSGTERLAEVVEKLAIPDNEIIVNIQGDEPLIP 104

Query: 73  PEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKS 132
           P I+  V   L      + S AV     E+ F+PN VK + D  GY +YFSR +IPY++ 
Sbjct: 105 PVIVRQVADNLAKFNVNMASLAVKIHDAEELFNPNAVKVLTDKDGYVLYFSRSVIPYDRD 164

Query: 133 G--------KVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKM 184
                    KV     YL H+GI +Y + F+K Y    PT L+  E LEQL+VL NG ++
Sbjct: 165 QFMNLQDVQKVQLSDAYLRHIGIYAYRAGFIKQYVQWAPTQLENLEKLEQLRVLYNGERI 224

Query: 185 KVIKVDH-EAHGVDAPEDVEKIESFMRE 211
            V       A GVD  ED+EK+ + +  
Sbjct: 225 HVELAKEVPAVGVDTAEDLEKVRAILAA 252

>d1vh1a_ c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase {Escherichia coli, KdsB [TaxId: 562]} Length = 246

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase
species: Escherichia coli, KdsB [TaxId: 562]

 Score =  100 bits (248), Expect = 2e-26
 Identities = 78/202 (38%), Positives = 111/202 (54%), Gaps = 6/202 (2%)

Query: 14  VVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKY-DIVVNIQGDEPLIE 72
           +VATD E +A   +  G +V MT    ++GTER  E ++K       ++VN+QGDEP+I 
Sbjct: 45  IVATDHEDVARAVEAAGGEVCMTRADHQSGTERLAEVVEKCAFSDDTVIVNVQGDEPMIP 104

Query: 73  PEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNK- 131
             II  V   L      + + AV     E+AF+PN VK V+D  GYA+YFSR  IP+++ 
Sbjct: 105 ATIIRQVADNLAQRQVGMATLAVPIHNAEEAFNPNAVKVVLDAEGYALYFSRATIPWDRD 164

Query: 132 ---SGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIK 188
               G       +L HLGI  Y + F++ Y    P+PL+  E LEQL+VL  G K+ V  
Sbjct: 165 RFAEGLETVGDNFLRHLGIYGYRAGFIRRYVNWQPSPLEHIEMLEQLRVLWYGEKIHVAV 224

Query: 189 VDH-EAHGVDAPEDVEKIESFM 209
                  GVD PED+E++ + M
Sbjct: 225 AQEVPGTGVDTPEDLERVRAEM 246

>d1h7ea_ c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase {Escherichia coli, KpsU [TaxId: 562]} Length = 245

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase
species: Escherichia coli, KpsU [TaxId: 562]

 Score = 98.9 bits (245), Expect = 4e-26
 Identities = 62/207 (29%), Positives = 107/207 (51%), Gaps = 5/207 (2%)

Query: 7   SFLFCGLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQG 66
                 + VATDD ++ +  Q FG   IMT     +GT+R  E + K+  + DI +N+QG
Sbjct: 40  VAGVAEVWVATDDPRVEQAVQAFGGKAIMTRNDHESGTDRLVEVMHKV--EADIYINLQG 97

Query: 67  DEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGL 126
           DEP+I P  ++ +++ ++  P    +T   ++   +A +P+ VK VV+    A+YFSR  
Sbjct: 98  DEPMIRPRDVETLLQGMRDDPALPVATLCHAISAAEAAEPSTVKVVVNTRQDALYFSR-- 155

Query: 127 IPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKV 186
                  +   +  YL H+GI +Y  + L+ Y  L  +  +  E LEQL+++  G  ++ 
Sbjct: 156 -SPIPYPRNAEKARYLKHVGIYAYRRDVLQNYSQLPESMPEQAESLEQLRLMNAGINIRT 214

Query: 187 IKVDHEAHGVDAPEDVEKIESFMRERN 213
            +V     GVD P  +EK+ + M +  
Sbjct: 215 FEVAATGPGVDTPACLEKVRALMAQEL 241

>d2dpwa1 c.68.1.19 (A:1-231) Uncharacterized protein TTHA0179 {Thermus thermophilus [TaxId: 274]} Length = 231

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: TTHA0179-like
domain: Uncharacterized protein TTHA0179
species: Thermus thermophilus [TaxId: 274]

 Score = 93.8 bits (232), Expect = 3e-24
 Identities = 27/201 (13%), Positives = 55/201 (27%), Gaps = 23/201 (11%)

Query: 13  LVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIE 72
           L  A                  +T        E   +AL+ +      V+   GD P + 
Sbjct: 42  LYAAGLSPVYVGENPGLVPAPALTLPDRGGLLENLEQALEHV---EGRVLVATGDIPHLT 98

Query: 73  PEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDN-----HGYAIYFSRGLI 127
            E +  V+     A        +   +  +A  P   +           G  +      +
Sbjct: 99  EEAVRFVLDKAPEAALVY---PIVPKEAVEARFPRTKRTYARLREGTFTGGNLLLLDKSL 155

Query: 128 PYNKSGK----VNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYK 183
                      V  +   L    +  +D   L        +  ++E   +++     G +
Sbjct: 156 FRKALPLARRVVALRKRPLALARLVGWD--VLLKLLLGRLSLAEVEARAQRI----LGVE 209

Query: 184 MKVIKVDHEAHG--VDAPEDV 202
            + +   +   G  VD  ED+
Sbjct: 210 ARALVTPYPEVGVDVDREEDL 230

>d1g97a2 c.68.1.5 (A:2-251) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} Length = 250

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: UDP-glucose pyrophosphorylase
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain
species: Streptococcus pneumoniae [TaxId: 1313]

 Score = 43.1 bits (100), Expect = 7e-06
 Identities = 31/204 (15%), Positives = 54/204 (26%), Gaps = 15/204 (7%)

Query: 14  VVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEP 73
           V     +         G    +T                 LE      + I GD PLI  
Sbjct: 48  VTVVGHKAELVEEVLAGQTEFVTQSEQLGTGHAVMMTEPILEGLSGHTLVIAGDTPLITG 107

Query: 74  EIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSG 133
           E +  ++       +             +  +P     +V N    +      I   K  
Sbjct: 108 ESLKNLIDFHINHKNVATI------LTAETDNPFGYGRIVRNDNAEVLR----IVEQKDA 157

Query: 134 KVNPQFPYLLHLGIQSYDSNFLKIYPGL---HPTPLQLEEDLEQLKVLENGYKMKVIKVD 190
               +    ++ G   +D+  L         +    +           E G K+    + 
Sbjct: 158 TDFEKQIKEINTGTYVFDNERLFEALKNINTNNAQGEYYITDVIGIFRETGEKVGAYTLK 217

Query: 191 --HEAHGVDAPEDVEKIESFMRER 212
              E+ GV+    +   ES MR R
Sbjct: 218 DFDESLGVNDRVALATAESVMRRR 241

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	215
d1vh1a_	246	CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)syn	99.94
d1h7ea_	245	CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)syn	99.92
d1vica_	255	CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)syn	99.92
d1eyra_	225	CMP acylneuraminate synthetase {Neisseria meningit	99.86
d1qwja_	228	CMP acylneuraminate synthetase {Mouse (Mus musculu	99.85
d1w77a1	226	4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me)	99.67
d1vgwa_	226	4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me)	99.59
d1vpaa_	221	4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me)	99.57
d1w55a1	205	IspD/IspF bifunctional enzyme, CDP-me synthase dom	99.49
d1i52a_	225	4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me)	99.41
d1g97a2	250	N-acetylglucosamine 1-phosphate uridyltransferase	99.07
d2oi6a2	248	N-acetylglucosamine 1-phosphate uridyltransferase	98.72
d2dpwa1	231	Uncharacterized protein TTHA0179 {Thermus thermoph	98.71
d2i5ea1	208	Hypothetical protein MM2497 {Methanosarcina mazei	97.75
d1lvwa_	295	RmlA (RfbA) {Archaeon Methanobacterium thermoautot	97.38
d1jyka_	229	CTP:phosphocholine cytidylytransferase LicC {Strep	97.33
d1mc3a_	291	RffH {Escherichia coli [TaxId: 562]}	97.3
d1fxoa_	292	RmlA (RfbA) {Pseudomonas aeruginosa [TaxId: 287]}	97.09
d1e5ka_	188	Molybdenum cofactor biosynthesis protein MobA {Esc	96.84
d1yp2a2	307	Glucose-1-phosphate adenylyltransferase small subu	95.91
d1tzfa_	259	Glucose-1-phosphate cytidylyltransferase RfbF {Sal	94.48
d2cu2a2	268	Putative mannose-1-phosphate guanylyl transferase	92.76
d1omza_	265	Alpha-1,4-N-acetylhexosaminyltransferase (Alpha-Ga	82.6
d1xhba2	328	Polypeptide N-acetylgalactosaminyltransferase 1, N	81.27

>d1vh1a_ c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase {Escherichia coli, KdsB [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase
species: Escherichia coli, KdsB [TaxId: 562]

Probab=99.94  E-value=3.4e-26  Score=181.28  Aligned_cols=204  Identities=37%  Similarity=0.582  Sum_probs=154.8

Q ss_pred             cccccCCCCcEEEEcCcHHHHHHHHHcCCeEEeCCCCCCCchHHHHHHHHHh-cCCCCEEEEecCCCCCCCHHHHHHHHH
Q 027992            3 VMCHSFLFCGLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKL-EKKYDIVVNIQGDEPLIEPEIIDGVVK   81 (215)
Q Consensus         3 ~a~~~~~~d~ivV~td~~~i~~~~~~~g~~v~~~~~~~~~~~~~i~~~l~~~-~~~~d~v~~~~~d~Pli~~~~i~~~i~   81 (215)
                      +|++++ +++|||+||+++|.+++.++|++++.+++...++++++..++... ..+.+.++.++||+||++++.++.+++
T Consensus        35 ~a~~s~-i~~iiVsTd~~~i~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~pl~~~~~i~~~i~  113 (246)
T d1vh1a_          35 RARESG-AERIIVATDHEDVARAVEAAGGEVCMTRADHQSGTERLAEVVEKCAFSDDTVIVNVQGDEPMIPATIIRQVAD  113 (246)
T ss_dssp             HHHHTT-CSEEEEEESCHHHHHHHHHTTCEEEECC-----CHHHHHHHHHHTTCCTTCEEEECCTTCTTCCHHHHHHHHH
T ss_pred             HHHHcC-CCcEEEEecCccccchhhcccccceeecccccccchHHHHHHHhhcccccceeeeeccccccchhhHHHHHhh
Confidence            567775 899999999999999999999999666667777888877777665 357789999999999999999999999


Q ss_pred             HHHcC-CCceEEeecccCC-CCccCCCCceEEEEcCCCceecccCCCCCCCCCC--CCCCCCC--eeEEeeeeeechHHH
Q 027992           82 ALQAA-PDAVFSTAVTSLK-PEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSG--KVNPQFP--YLLHLGIQSYDSNFL  155 (215)
Q Consensus        82 ~~~~~-~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~ip~~~~~--~~~q~~p--~~~~~~~~~~~~~~l  155 (215)
                      .+... .+.+.++  .+.. ......++.++++.+.+|.+.+|++...|..+..  ..++..+  ++.+.+.|+|+...|
T Consensus       114 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~vk~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~giy~~~~~~l  191 (246)
T d1vh1a_         114 NLAQRQVGMATLA--VPIHNAEEAFNPNAVKVVLDAEGYALYFSRATIPWDRDRFAEGLETVGDNFLRHLGIYGYRAGFI  191 (246)
T ss_dssp             HHHHSSSSEEEEE--EECCCHHHHTCTTSCEEEECTTSBEEEEESSCSSCCHHHHSSCCCCCCSCCEEEEEEEEEEHHHH
T ss_pred             hhccccccccccc--ccccchhcccCCCcceeeecccCcccccccccchhhhhhhhhhhhccchhhheecceeeechhhh
Confidence            99653 3443333  2222 1122345667888788899988887766544321  1233333  455777899999999


Q ss_pred             hhCcCCCCCCCCCccchhhhhhhhcCCeeEEEEec-CCCCCCCCHHHHHHHHHHH
Q 027992          156 KIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVD-HEAHGVDAPEDVEKIESFM  209 (215)
Q Consensus       156 ~~~~~~~~~~~~~~e~l~~~~~~~~g~~v~~~~~~-~~~idIdt~~Dl~~ae~il  209 (215)
                      .++..+..+.+|+.|+++++|+++.|.++.++.++ .+++||||++||++||.+|
T Consensus       192 ~~~~~~~~s~~E~~e~le~lR~i~~g~~i~~~~~~~~~~~~IDt~~Dl~~a~k~m  246 (246)
T d1vh1a_         192 RRYVNWQPSPLEHIEMLEQLRVLWYGEKIHVAVAQEVPGTGVDTPEDLERVRAEM  246 (246)
T ss_dssp             HHHHHSCCCHHHHHHTCTTHHHHHTTCCEEEEECSSCCCCCCCSHHHHHHHHHHC
T ss_pred             hhhccCCCChHHHHHhHHHHHHHHCCCceEEEEecCCCCCCCCCHHHHHHHHhcC
Confidence            88877777778888999999999999999988874 7899999999999999875

>d1h7ea_ c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase {Escherichia coli, KpsU [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase
species: Escherichia coli, KpsU [TaxId: 562]

Probab=99.92  E-value=1.2e-23  Score=166.16  Aligned_cols=204  Identities=32%  Similarity=0.559  Sum_probs=155.7

Q ss_pred             ccccccCCCCcEEEEcCcHHHHHHHHHcCCeEEeCCCCCCCchHHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHH
Q 027992            2 LVMCHSFLFCGLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVK   81 (215)
Q Consensus         2 ~~a~~~~~~d~ivV~td~~~i~~~~~~~g~~v~~~~~~~~~~~~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~   81 (215)
                      .+|++++.+++|+|+|+++++...+..+|++++.++..+.+++.++..++..+  ..|.++.++||+||+++..++.+++
T Consensus        35 ~~a~~~~~~d~Iiv~td~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~d~vv~l~~~~p~~~~~~i~~~~~  112 (245)
T d1h7ea_          35 ERALQVAGVAEVWVATDDPRVEQAVQAFGGKAIMTRNDHESGTDRLVEVMHKV--EADIYINLQGDEPMIRPRDVETLLQ  112 (245)
T ss_dssp             HHHHTCTTCCEEEEEESCHHHHHHHHHTTCEEEECCSCCSSHHHHHHHHHHHS--CCSEEEECCTTCTTCCHHHHHHHHH
T ss_pred             HHHHhCCCCCeEEEecccccchhhhhhcCceEEEecCccccccHHHHHHHHhc--CCCEEEEecchhhhcccccchhhhh
Confidence            35788999999999999999999999999999877778878888888888887  6799999999999999999999999


Q ss_pred             HHHcCC-CceEEeecccCCCCccCCCCceEEEEcCCCceecccCCCCCCCCCCCCCCCCC-eeEEeeeeeechHHHhhCc
Q 027992           82 ALQAAP-DAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFP-YLLHLGIQSYDSNFLKIYP  159 (215)
Q Consensus        82 ~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ip~~~~~~~~q~~p-~~~~~~~~~~~~~~l~~~~  159 (215)
                      .+.... ....+.. .........++..++......+...++........    +.+... ...+.+.|+|....+.+|.
T Consensus       113 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~vk~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~g~~~~~~~~l~~~~  187 (245)
T d1h7ea_         113 GMRDDPALPVATLC-HAISAAEAAEPSTVKVVVNTRQDALYFSRSPIPYP----RNAEKARYLKHVGIYAYRRDVLQNYS  187 (245)
T ss_dssp             HHHHCTTCCEEEEE-EEECHHHHTCTTSCEEEECTTCBEEEEESSCSSCC----TTGGGCCEEEEEEEEEEEHHHHHHGG
T ss_pred             cccccccccccccc-cccccccccCCcceeeccchhhhhhhhhhhhhhhh----hcccccccceeeeeEEeeeccccccc
Confidence            986432 3222221 12111122334455555555555555544322211    222222 4567788999999999988


Q ss_pred             CCCCCCCCCccchhhhhhhhcCCeeEEEEecCCCCCCCCHHHHHHHHHHHHhh
Q 027992          160 GLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAPEDVEKIESFMRER  212 (215)
Q Consensus       160 ~~~~~~~~~~e~l~~~~~~~~g~~v~~~~~~~~~idIdt~~Dl~~ae~il~~~  212 (215)
                      .+..+.++..|.++++|+++.|.++.++..+..+++|||++||+.||.+|+++
T Consensus       188 ~~~~s~~e~~e~ie~lr~l~ng~~I~~~~~~~~~~~IDt~~Dl~~a~~il~~~  240 (245)
T d1h7ea_         188 QLPESMPEQAESLEQLRLMNAGINIRTFEVAATGPGVDTPACLEKVRALMAQE  240 (245)
T ss_dssp             GSCCCHHHHHHTCTTHHHHHTTCCEEEEECCCCCCCSSSHHHHHHHHHHHHHH
T ss_pred             cccCChhhhhhhHHHHHHHHCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHHhh
Confidence            88777778888899999988999999999888999999999999999999864

>d1vica_ c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase
species: Haemophilus influenzae [TaxId: 727]

Probab=99.92  E-value=5.6e-24  Score=168.86  Aligned_cols=209  Identities=39%  Similarity=0.624  Sum_probs=154.2

Q ss_pred             cccccCCCCcEEEEcCcHHHHHHHHHcCCeEEeCCCCCCCchHHHHHHHHHh-cCCCCEEEEecCCCCCCCHHHHHHHHH
Q 027992            3 VMCHSFLFCGLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKL-EKKYDIVVNIQGDEPLIEPEIIDGVVK   81 (215)
Q Consensus         3 ~a~~~~~~d~ivV~td~~~i~~~~~~~g~~v~~~~~~~~~~~~~i~~~l~~~-~~~~d~v~~~~~d~Pli~~~~i~~~i~   81 (215)
                      +|++++ +++|||+||++++.+++.++|+.+..+.....+|+.+...+.... ..+.+.++.++||+||+++.+++.+++
T Consensus        35 ~a~~s~-i~~IiVsTd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~~~d~p~~~~~~i~~~i~  113 (255)
T d1vica_          35 KALQSG-ASRVIIATDNENVADVAKSFGAEVCMTSVNHNSGTERLAEVVEKLAIPDNEIIVNIQGDEPLIPPVIVRQVAD  113 (255)
T ss_dssp             HHHHTT-CSEEEEEESCHHHHHHHHHTTCEEEECCCSSCCHHHHHHHHHHHTTCCTTCEEEECCTTCTTCCHHHHHHHHH
T ss_pred             HHHHCC-CCeEEEEcCCcccchhhhhhccccceeeeccCCcchhhHHHHHHhhccCCceEEEEecchhhhhhhhhhhhhh
Confidence            466775 799999999999999999999999666667778887766666554 357789999999999999999999999


Q ss_pred             HHHc-CCCceEEeecccCCCCccCCCCceEEEEcCCCceecccCCCCCCCCC------CCCCCCCC--eeEEeeeeeech
Q 027992           82 ALQA-APDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKS------GKVNPQFP--YLLHLGIQSYDS  152 (215)
Q Consensus        82 ~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ip~~~~------~~~~q~~p--~~~~~~~~~~~~  152 (215)
                      .+.. ..+....+. .........+++.+....+++|...++.+...+..+.      ..++++.+  +..+.+.++|+.
T Consensus       114 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  192 (255)
T d1vica_         114 NLAKFNVNMASLAV-KIHDAEELFNPNAVKVLTDKDGYVLYFSRSVIPYDRDQFMNLQDVQKVQLSDAYLRHIGIYAYRA  192 (255)
T ss_dssp             HHHHHTCSEEEEEE-ECCCHHHHTCTTSCEEEECTTSBEEEEESSCSSCCHHHHTTCSCGGGCCCCTTCEEEEEEEEEEH
T ss_pred             hcccccccccceee-eccchhhccCccceeeeeccCCcccccccccccccchhhhhccchhhcccccchheeeeeecccH
Confidence            9864 333333321 1221111233455555667778777766654332211      11233443  455677899999


Q ss_pred             HHHhhCcCCCCCCCCCccchhhhhhhhcCCeeEEEEec-CCCCCCCCHHHHHHHHHHHHhhc
Q 027992          153 NFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVD-HEAHGVDAPEDVEKIESFMRERN  213 (215)
Q Consensus       153 ~~l~~~~~~~~~~~~~~e~l~~~~~~~~g~~v~~~~~~-~~~idIdt~~Dl~~ae~il~~~~  213 (215)
                      ..+..|..+.++.++..|.++++|+++.|.+|.++.++ .+++||||++||+.||.+|++.|
T Consensus       193 ~~l~~~~~~~~~~le~~e~le~lr~l~ng~~I~~~~~~~~~~idIDt~eDl~~ae~ilkkn~  254 (255)
T d1vica_         193 GFIKQYVQWAPTQLENLEKLEQLRVLYNGERIHVELAKEVPAVGVDTAEDLEKVRAILAANG  254 (255)
T ss_dssp             HHHHHHHHSCCCHHHHHHTCTTHHHHHTTCCEEEEECSSCCCCCCCSHHHHHHHHHHHHHTC
T ss_pred             HHHhhhhccCCChhHHHHhHHHHHHHHCCCceeEEEeCCCCCcCCCCHHHHHHHHHHHHHcC
Confidence            88888877777777777888999998899999988874 68999999999999999999866

>d1eyra_ c.68.1.13 (A:) CMP acylneuraminate synthetase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: CMP acylneuraminate synthetase
species: Neisseria meningitidis [TaxId: 487]

Probab=99.86  E-value=4.1e-21  Score=149.18  Aligned_cols=180  Identities=18%  Similarity=0.182  Sum_probs=128.1

Q ss_pred             ccccccCCCCcEEEEcCcHHHHHHHHHcCCeEEeCCCCCCCch----HHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHH
Q 027992            2 LVMCHSFLFCGLVVATDDEKIAECCQQFGADVIMTSESCRNGT----ERCNEALQKLEKKYDIVVNIQGDEPLIEPEIID   77 (215)
Q Consensus         2 ~~a~~~~~~d~ivV~td~~~i~~~~~~~g~~v~~~~~~~~~~~----~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~   77 (215)
                      .+|++++.++.|||+||++++.++++++|..++.|+..+.++.    ..+.+++..+...+|.|++++||+||+++++|+
T Consensus        37 ~~~~~s~~~~~Iiv~td~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~~~P~~~~~~I~  116 (225)
T d1eyra_          37 NAAISSKCFDRIIVSTDGGLIAEEAKNFGVEVVLRPAELASDTASSISGVIHALETIGSNSGTVTLLQPTSPLRTGAHIR  116 (225)
T ss_dssp             HHHHHHTCCSEEEEEESCHHHHHHHHHTTCEEEECCHHHHSTTCCHHHHHHHHHHHHTCCSEEEEECCTTCTTCCHHHHH
T ss_pred             HHHHHcCCCceEEEeeccchhhhhhhhhcceeeeeccccccccccchhhccccccccccccceEEEeecccccccccccc
Confidence            3577889999999999999999999999999988876655443    246777777766789999999999999999999


Q ss_pred             HHHHHHHc-CCCceEEeecccCCCCccCCCCceEEEEcCCCceecccCCCCCCCCCCCCCCCCCeeEEeee--eeechHH
Q 027992           78 GVVKALQA-APDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGI--QSYDSNF  154 (215)
Q Consensus        78 ~~i~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ip~~~~~~~~q~~p~~~~~~~--~~~~~~~  154 (215)
                      ++++.+.+ +.++++++.  +..    .+|...... .++|....+...    .....++|+.+..|..+|  |+|+.+.
T Consensus       117 ~~i~~~~~~~~d~~~~~~--~~~----~~~~~~~~~-~~~~~~~~~~~~----~~~~~~~~~~~~~y~~~g~iy~~~~~~  185 (225)
T d1eyra_         117 EAFSLFDEKIKGSVVSAC--PME----HHPLKTLLQ-INNGEYAPMRHL----SDLEQPRQQLPQAFRPNGAIYINDTAS  185 (225)
T ss_dssp             HHHTTCCTTTCCCEEEEE--ECS----SCTTSCEEE-CSSSCEEESSCG----GGGTSCGGGSCCEEEEEEEEEEEEHHH
T ss_pred             ccceeeccccccccceee--ccc----ccccccccc-cccccccccccc----cccccccccCcceeeecceeEEeeHHH
Confidence            99999853 557777754  332    233333222 344443322111    111235778887776665  5556666


Q ss_pred             HhhCcCCCCCCCCCccchhhhhhhhcCCeeEEEEe-cCCCCCCCCHHHHHHHHHHHH
Q 027992          155 LKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKV-DHEAHGVDAPEDVEKIESFMR  210 (215)
Q Consensus       155 l~~~~~~~~~~~~~~e~l~~~~~~~~g~~v~~~~~-~~~~idIdt~~Dl~~ae~il~  210 (215)
                      +.+...+                  .|.++..++. ..+++||||++||++||.|++
T Consensus       186 l~~~~~~------------------~~~~~~~~~i~~~~~~dIdt~eDl~~ae~i~~  224 (225)
T d1eyra_         186 LIANNCF------------------FIAPTKLYIMSHQDSIDIDTELDLQQAENILN  224 (225)
T ss_dssp             HHHHTSS------------------CCSSCEEEECCTTTTCCCCSHHHHHHHHHHHT
T ss_pred             HHHcCCc------------------cCCCeEEEEcCccceECCCCHHHHHHHHHHhC
Confidence            6544322                  3456667775 579999999999999999985

>d1qwja_ c.68.1.13 (A:) CMP acylneuraminate synthetase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: CMP acylneuraminate synthetase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.85  E-value=2.2e-21  Score=151.19  Aligned_cols=181  Identities=20%  Similarity=0.199  Sum_probs=124.1

Q ss_pred             cccccCCCCcEEEEcCcHHHHHHHHHcCCeEEeCCCCCCCchH----HHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHH
Q 027992            3 VMCHSFLFCGLVVATDDEKIAECCQQFGADVIMTSESCRNGTE----RCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDG   78 (215)
Q Consensus         3 ~a~~~~~~d~ivV~td~~~i~~~~~~~g~~v~~~~~~~~~~~~----~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~   78 (215)
                      .|++++.+++|||+|+++++.+++.++|+.++.++..++++..    .+.+++... ...|.+++++||+||+++++|++
T Consensus        37 ~~~ks~~id~Iivstd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~iv~~~~~~P~~~~~~I~~  115 (228)
T d1qwja_          37 AALDAGVFQSVWVSTDHDEIENVAKQFGAQVHRRSSETSKDSSTSLDAIVEFLNYH-NEVDIVGNIQATSPCLHPTDLQK  115 (228)
T ss_dssp             HHHHHTCCSEEEEEESCHHHHHHHHHTTCEEEECCGGGSSTTCCHHHHHHHHHTTC-TTCSEEEEECTTCTTCCHHHHHH
T ss_pred             HHHhcCCcceEEEecchhhhhhhhhhcCccccccccccccccchhhhhhhhccccc-cccceeeeecccccccCchhhhh
Confidence            5678899999999999999999999999999878777766554    345555543 36799999999999999999999


Q ss_pred             HHHHHHc-CCCceEEeecccCCCCccCCCCceEEEEcCCCceecccCCCCCCCCCCCCCCCCCeeEEeeeeee--chHHH
Q 027992           79 VVKALQA-APDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSY--DSNFL  155 (215)
Q Consensus        79 ~i~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ip~~~~~~~~q~~p~~~~~~~~~~--~~~~l  155 (215)
                      +++.+.+ +.++++++...+.        ..++.. ..+..........  ......++|++|..|..+|.+|  +..++
T Consensus       116 ~i~~~~~~~~d~~~~~~~~~~--------~~~~~~-~~~~~~~~~~~~~--~~~~~~~~qd~~~~y~~ng~~~~~k~~~~  184 (228)
T d1qwja_         116 VAEMIREEGYDSVFSVVRRHQ--------FRWSEI-QKGVREVTEPLNL--NPAKRPRRQDWDGELYENGSFYFAKRHLI  184 (228)
T ss_dssp             HHHHHHSSCCSEEEEEEEECC--------CEECCC-CSSTTCCCCBSSS--BTTBCCCTTTSCCEEEEEEEEEEEEHHHH
T ss_pred             hhhhhhccCcccccccccccc--------ccchhh-hhhccccccchhh--hhhhccccccccceeeeeeEEEEEeHHHH
Confidence            9999964 5677777543221        111111 1111100000000  0111246899998887777554  54444


Q ss_pred             hhCcCCCCCCCCCccchhhhhhhhcCCeeEEEEe-cCCCCCCCCHHHHHHHHHHHHhhcC
Q 027992          156 KIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKV-DHEAHGVDAPEDVEKIESFMRERNL  214 (215)
Q Consensus       156 ~~~~~~~~~~~~~~e~l~~~~~~~~g~~v~~~~~-~~~~idIdt~~Dl~~ae~il~~~~~  214 (215)
                      .. ..+                  .|.++..+++ ..+++||||++||++||.+|.+.|+
T Consensus       185 ~~-~~~------------------~~~k~~~~~i~~~~~idIDt~eD~~~Ae~~l~k~~~  225 (228)
T d1qwja_         185 EM-GYL------------------QGGKMAYYEMRAEHSVDIDVDIDWPIAEQRVLRFGY  225 (228)
T ss_dssp             HT-TCS------------------SCSSEEEEECCGGGCCCHHHHCSHHHHHHHHHHHSC
T ss_pred             hh-CCc------------------CCCCEEEEEcCccceECCCCHHHHHHHHHHHHHhCC
Confidence            32 111                  3556677775 4789999999999999999988764

>d1w77a1 c.68.1.13 (A:75-300) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP)
species: Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]

Probab=99.67  E-value=2.4e-16  Score=122.64  Aligned_cols=180  Identities=16%  Similarity=0.169  Sum_probs=109.4

Q ss_pred             cccccCCCCcEEEEcCcHH---HHHHHHHcCCeE-EeCCCCCCCchHHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHH
Q 027992            3 VMCHSFLFCGLVVATDDEK---IAECCQQFGADV-IMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDG   78 (215)
Q Consensus         3 ~a~~~~~~d~ivV~td~~~---i~~~~~~~g~~v-~~~~~~~~~~~~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~   78 (215)
                      .+.+++.++.|+|+++...   ++++...++..+ +..+..  +...++.+|+..+....|+|++|+||+||++++++.+
T Consensus        41 ~~~~~~~~~~Iivv~~~~~~~~~~~~~~~~~~~~~~~~gg~--~r~~sv~~~l~~~~~~~~~Vli~d~~~P~i~~~~i~~  118 (226)
T d1w77a1          41 TFSRMPEVKEIVVVCDPFFRDIFEEYEESIDVDLRFAIPGK--ERQDSVYSGLQEIDVNSELVCIHDSARPLVNTEDVEK  118 (226)
T ss_dssp             HHHTCTTEEEEEEECCGGGTHHHHTTTTSCSSEEEEECCCS--SHHHHHHHHHHTSCTTCSEEEEEETTCTTCCHHHHHH
T ss_pred             HHHhhccccceeeccchhhhhhhhccccccccccccccccc--hhhhhhhhhHhhhccccccceecccccccccHHHhhh
Confidence            3456778999999997532   333333344544 222211  2245688999988767899999999999999999999


Q ss_pred             HHHHHHcCCCceEEeecccCCCCccCCCCceEEEEcCCCceecccCCCCCCCCCCCCCCCCCeeEEeeeeeechHHHhh-
Q 027992           79 VVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKI-  157 (215)
Q Consensus        79 ~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ip~~~~~~~~q~~p~~~~~~~~~~~~~~l~~-  157 (215)
                      +++....+ ++.+.+.  +..       ++.+.. ..++...   . . + +     +..  .+...++++|+...|.+ 
T Consensus       119 l~~~~~~~-~~~i~~~--~~~-------d~~~~~-~~~~~~~---~-~-~-~-----r~~--~~~~~~p~~f~~~~l~~~  174 (226)
T d1w77a1         119 VLKDGSAV-GAAVLGV--PAK-------ATIKEV-NSDSLVV---K-T-L-D-----RKT--LWEMQTPQVIKPELLKKG  174 (226)
T ss_dssp             HHHHHHHH-SEEEEEE--ECC-------SCCCCB-CTTSCBC-----------------C--CEEEEEEEEECHHHHHHH
T ss_pred             hhhhhhcc-Cceeecc--ccc-------cceEEE-ccCCcee---e-c-c-c-----chh--hhHHHHHHhHhhHHHHHH
Confidence            99998764 4444432  221       232221 1222111   0 0 0 1     111  45567789998766543 


Q ss_pred             CcCCCCCCCCCccchhhhhhh-hcCCeeEEEEecCCCCCCCCHHHHHHHHHHHHh
Q 027992          158 YPGLHPTPLQLEEDLEQLKVL-ENGYKMKVIKVDHEAHGVDAPEDVEKIESFMRE  211 (215)
Q Consensus       158 ~~~~~~~~~~~~e~l~~~~~~-~~g~~v~~~~~~~~~idIdt~~Dl~~ae~il~~  211 (215)
                      +........+   ..+...++ ..|.++.++++++.|++||||+||++||.+|++
T Consensus       175 ~~~~~~~~~~---~TD~~~l~~~~g~~v~~v~g~~~n~KItt~eDl~~ae~lL~~  226 (226)
T d1w77a1         175 FELVKSEGLE---VTDDVSIVEYLKHPVYVSQGSYTNIKVTTPDDLLLAERILSE  226 (226)
T ss_dssp             HHHHHHSCCC---CCC-CCTTGGGSSCCEEEECCTTCCCCCSHHHHHHHHHHHHC
T ss_pred             HHHHHhcCCC---cCcHHHHHHHCCCceEEEECChhhcCcCCHHHHHHHHHHhCc
Confidence            2110000000   01111222 269999999999999999999999999999964

>d1vgwa_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Neisseria gonorrhoeae [TaxId: 485]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP)
species: Neisseria gonorrhoeae [TaxId: 485]

Probab=99.59  E-value=2.7e-14  Score=110.79  Aligned_cols=177  Identities=12%  Similarity=0.130  Sum_probs=106.5

Q ss_pred             cccccCCCCcEEEEcCcH-HHHHHH-HHcCCeEEeCCCCCCCchHHHHHHHHHh-----cCCCCEEEEecCCCCCCCHHH
Q 027992            3 VMCHSFLFCGLVVATDDE-KIAECC-QQFGADVIMTSESCRNGTERCNEALQKL-----EKKYDIVVNIQGDEPLIEPEI   75 (215)
Q Consensus         3 ~a~~~~~~d~ivV~td~~-~i~~~~-~~~g~~v~~~~~~~~~~~~~i~~~l~~~-----~~~~d~v~~~~~d~Pli~~~~   75 (215)
                      .+.+++.++.|+|+++.+ .+.+.. ..+...+...... .+...++.+|+..+     ..+.|.|+++++|+||+++..
T Consensus        40 ~~~~~~~~~~iivv~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~s~~~~l~~~~~~~~~~~~~~v~~~~~~~P~i~~~~  118 (226)
T d1vgwa_          40 IFERHEAVDLTVVVVSPEDTFADKVQTAFPQVRVWKNGG-QTRAETVRNGVAKLLETGLAAETDNILVHDAARCCLPSEA  118 (226)
T ss_dssp             HHHTCTTCCEEEEECCTTCSTHHHHHHHCTTSEEECCCC-SSHHHHHHHHHHHHHHHSSSCTTSEEEECCTTCTTCCHHH
T ss_pred             HHHhCCCccccceecchhhhhhhhhcccccceeeccccc-cccchhhhHHHHHHHHhcccccccceeecccccccCcHHH
Confidence            455778899999998643 333333 3343333222211 12234566666554     246799999999999999999


Q ss_pred             HHHHHHHHHcCCCceEEeecccCCCCccCCCCceEEEEcCCCceecccCCCCCCCCCCCCCCCCCeeEEeeeeeechHHH
Q 027992           76 IDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFL  155 (215)
Q Consensus        76 i~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ip~~~~~~~~q~~p~~~~~~~~~~~~~~l  155 (215)
                      +.++++.+..+....+.+  .+..       ++.+..  ++|....     .+ +|+     .  .....+++.|....+
T Consensus       119 i~~~i~~~~~~~~~~i~~--~~~~-------~~~~~~--~~~~i~~-----~~-~r~-----~--~~~~~~p~~f~~~~l  174 (226)
T d1vgwa_         119 LARLIEQAGNAAEGGILA--VPVA-------DTLKRA--ESGQISA-----TV-DRS-----G--LWQAQTPQLFQAGLL  174 (226)
T ss_dssp             HHHHHHHHTTCTTCEEEE--EECC-------SCEEEE--SSSBEEE-----EE-CCT-----T--EEEEEEEEEEEHHHH
T ss_pred             HHHHHhhhcccccceeec--cccc-------ccceec--cCCeEEe-----cc-chH-----H--HHHHHhhhcccHHHH
Confidence            999999986543443332  2332       344332  3443321     01 111     1  455567888887665


Q ss_pred             hh-CcCCCCCCCCCccchhhhhhhh-cCCeeEEEEecCCCCCCCCHHHHHHHHHHH
Q 027992          156 KI-YPGLHPTPLQLEEDLEQLKVLE-NGYKMKVIKVDHEAHGVDAPEDVEKIESFM  209 (215)
Q Consensus       156 ~~-~~~~~~~~~~~~e~l~~~~~~~-~g~~v~~~~~~~~~idIdt~~Dl~~ae~il  209 (215)
                      .+ +....  .   .+..+...+++ .|.++.++++++.|++||||+||++||.+|
T Consensus       175 ~~~~~~~~--~---~~~tD~~~l~~~~g~~v~~v~g~~~nikItt~eDl~~ae~ll  225 (226)
T d1vgwa_         175 HRALAAEN--L---GGITDEASAVEKLGVRPLLIQGDARNLKLTQPQDAYIVRLLL  225 (226)
T ss_dssp             HHHHHC---------CCCSHHHHHHTTTCCCEEEECCTTCCCCCSHHHHHHHHHHC
T ss_pred             HHHHHHhh--c---CCCCcHHHHHHHcCCceEEEECCccccCcCCHHHHHHHHHHh
Confidence            43 22211  0   01123233333 699999999999999999999999999986

>d1vpaa_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP)
species: Thermotoga maritima [TaxId: 2336]

Probab=99.57  E-value=2.5e-14  Score=110.55  Aligned_cols=175  Identities=19%  Similarity=0.181  Sum_probs=111.1

Q ss_pred             cccccCCCCcEEEEcCcHHHHHHHHHcC--CeE-EeCCCCCCCchHHHHHHHHHhc-CCCCEEEEecCCCCCCCHHHHHH
Q 027992            3 VMCHSFLFCGLVVATDDEKIAECCQQFG--ADV-IMTSESCRNGTERCNEALQKLE-KKYDIVVNIQGDEPLIEPEIIDG   78 (215)
Q Consensus         3 ~a~~~~~~d~ivV~td~~~i~~~~~~~g--~~v-~~~~~~~~~~~~~i~~~l~~~~-~~~d~v~~~~~d~Pli~~~~i~~   78 (215)
                      ++.+++.++.|+|+++.+.........+  ..+ +.....  +...++.+++..+. ...+.++++++|+||++++++.+
T Consensus        40 ~~~~~~~~~~Iivv~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~s~~~~~~~~~~~~~~~v~~~~~d~p~~~~~~i~~  117 (221)
T d1vpaa_          40 TFLKSEAIDGVVIVTRREWFEVVEKRVFHEKVLGIVEGGD--TRSQSVRSALEFLEKFSPSYVLVHDSARPFLRKKHVSE  117 (221)
T ss_dssp             HHHHCTTCSEEEEEECGGGHHHHHTTCCCTTEEEEEECCS--SHHHHHHHHHHHHGGGCCSEEEEEETTSCCCCHHHHHH
T ss_pred             HHHhccccccceEEecchhhhHHHhhhccccccccccccc--cccchHHHHHHHHHhcCCCcEEEeccccccccHHHHHh
Confidence            3456778999999998776654444332  222 222212  34456677776653 46799999999999999999999


Q ss_pred             HHHHHHcCCCceEEeecccCCCCccCCCCceEEEEcCCCceecccCCCCCCCCCCCCCCCCCeeEEeeeeeechHHHhhC
Q 027992           79 VVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIY  158 (215)
Q Consensus        79 ~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ip~~~~~~~~q~~p~~~~~~~~~~~~~~l~~~  158 (215)
                      +++.+.+....+.+   .+..       ++++...  ++....     ++  ++       ..+...++++|+...+...
T Consensus       118 li~~~~~~~~~~~~---~~~~-------d~~~~~~--~~~~~~-----~~--~~-------~~~~~~~~~~~~~~~l~~~  171 (221)
T d1vpaa_         118 VLRRARETGAATLA---LKNS-------DALVRVE--NDRIEY-----IP--RK-------GVYRILTPQAFSYEILKKA  171 (221)
T ss_dssp             HHHHHHHHSEEEEE---EECC-------SEEEEEE--TTEEEE-----EC--CT-------TEEEEEEEEEEEHHHHHHH
T ss_pred             hhhhhccccccccc---cccc-------ceeEeec--Ccccee-----cc--hH-------HHHHhhhhhhhhHHHHHHH
Confidence            99999764333322   2221       4554432  222211     11  11       1456677888877655432


Q ss_pred             -cCCCCCCCCCccchhhhh-hhhcCCeeEEEEecCCCCCCCCHHHHHHHHHHHHhh
Q 027992          159 -PGLHPTPLQLEEDLEQLK-VLENGYKMKVIKVDHEAHGVDAPEDVEKIESFMRER  212 (215)
Q Consensus       159 -~~~~~~~~~~~e~l~~~~-~~~~g~~v~~~~~~~~~idIdt~~Dl~~ae~il~~~  212 (215)
                       ...       .+..+... +...|.++.+++++..+++||||+||++||.|++++
T Consensus       172 ~~~~-------~~~tD~~~l~~~~g~~v~~i~g~~~n~kI~t~eDl~~Ae~llk~~  220 (221)
T d1vpaa_         172 HENG-------GEWADDTEPVQKLGVKIALVEGDPLCFKVTFKEDLELARIIAREW  220 (221)
T ss_dssp             HTTC-------CCCSSSHHHHHTTTCCCEEEECCGGGCCCCSTTHHHHHHHHHHHH
T ss_pred             HHhC-------CCCccHHHHHHHcCCceEEEecChhhcCCCCHHHHHHHHHHHhcc
Confidence             111       01112223 333689999999988999999999999999999875

>d1w55a1 c.68.1.13 (A:3-207) IspD/IspF bifunctional enzyme, CDP-me synthase domain {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: IspD/IspF bifunctional enzyme, CDP-me synthase domain
species: Campylobacter jejuni [TaxId: 197]

Probab=99.49  E-value=3e-14  Score=109.15  Aligned_cols=157  Identities=17%  Similarity=0.233  Sum_probs=103.2

Q ss_pred             cccCCCCcEEEEcCcHHHHHHHHHc--CCeEEeCCCCCCCchHHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHH
Q 027992            5 CHSFLFCGLVVATDDEKIAECCQQF--GADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKA   82 (215)
Q Consensus         5 ~~~~~~d~ivV~td~~~i~~~~~~~--g~~v~~~~~~~~~~~~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~   82 (215)
                      .+...++.|||+++..+..   +.+  ...++... .  +-..++++|++.+  +.++|++|+|++||++++.|+++++.
T Consensus        40 ~~~~~~~~Ivvv~~~~~~~---~~~~~~~~~v~Gg-~--~r~~Sv~~gl~~~--~~~~VlIhd~~rP~i~~~~i~~li~~  111 (205)
T d1w55a1          40 SSFYPFKKIVVTSSNITYM---KKFTKNYEFIEGG-D--TRAESLKKALELI--DSEFVMVSDVARVLVSKNLFDRLIEN  111 (205)
T ss_dssp             HTTSCCSCEEEEESCHHHH---HTTCSSSEEEECC-S--SHHHHHHHHHTTC--CSSEEEEEETTCTTCCHHHHHHHHTT
T ss_pred             Hhhcccccccccccccccc---ccccccccccccc-c--chhhhhhhhhhhh--hhcceeeeccCcccCcHHHHHHHHhh
Confidence            4566789999998765433   233  23333211 1  2245788999887  66899999999999999999999998


Q ss_pred             HHcCCCceEEeecccCCCCccCCCCceEEEEcCCCceecccCCCCCCCCCCCCCCCCCeeEEeeeeeechHHHhh-CcCC
Q 027992           83 LQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKI-YPGL  161 (215)
Q Consensus        83 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ip~~~~~~~~q~~p~~~~~~~~~~~~~~l~~-~~~~  161 (215)
                      +.+ .++++.+  .+..       ++++.  .+  ..         .+|+..       +..+++|+|+.+.|.+ +.. 
T Consensus       112 ~~~-~~~~i~~--~~~~-------dti~~--~~--~~---------~~R~~l-------~~~qTPQ~f~~~~l~~a~~~-  160 (205)
T d1w55a1         112 LDK-ADCITPA--LKVA-------DTTLF--DN--EA---------LQREKI-------KLIQTPQISKTKLLKKALDQ-  160 (205)
T ss_dssp             GGG-CSEEEEE--ECCC-------SCEEE--TT--EE---------ECGGGC-------CEECSCEEEEHHHHHHHTSS-
T ss_pred             hhc-ccccccc--cccc-------ccccc--cc--cc---------ccchhe-------eeeecchhhhhHHHHHHHHc-
Confidence            876 4776664  3443       55532  11  11         123322       3345558888877654 321 


Q ss_pred             CCCCCCCccchhhhhhhh-cCCeeEEEEecCCCCCCCCHHHHHHHH
Q 027992          162 HPTPLQLEEDLEQLKVLE-NGYKMKVIKVDHEAHGVDAPEDVEKIE  206 (215)
Q Consensus       162 ~~~~~~~~e~l~~~~~~~-~g~~v~~~~~~~~~idIdt~~Dl~~ae  206 (215)
                        +    .+..+....++ .|.++.+++++..|++||||+||++||
T Consensus       161 --~----~~~tDd~~~~~~~g~~v~~i~g~~~N~KIT~~eDl~~~e  200 (205)
T d1w55a1         161 --N----LEFTDDSTAIAAMGGKIWFVEGEENARKLTFKEDLKKLD  200 (205)
T ss_dssp             --C----CCCSSHHHHHHTTTCCEEEEECCGGGCCCCSGGGGGGSC
T ss_pred             --C----CCCCcHHHHHHHcCCCEEEEecCcccCCCCCHHHHHHhc
Confidence              1    11234344444 689999999999999999999999886

>d1i52a_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP)
species: Escherichia coli [TaxId: 562]

Probab=99.41  E-value=8.9e-13  Score=101.62  Aligned_cols=180  Identities=9%  Similarity=0.095  Sum_probs=108.0

Q ss_pred             ccccCCCCcEEEEcCcHH--HHHHHHHcCCeE-EeCCCCCCCchHHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHH
Q 027992            4 MCHSFLFCGLVVATDDEK--IAECCQQFGADV-IMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVV   80 (215)
Q Consensus         4 a~~~~~~d~ivV~td~~~--i~~~~~~~g~~v-~~~~~~~~~~~~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i   80 (215)
                      +.+++.++.|+|+++.+.  +..........+ +.....  ++..++.+|+..+. +.+.|+++++|+||++++++.+++
T Consensus        41 ~~~~~~i~~Iivv~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~sv~~~~~~~~-~~~~vl~~~~~~p~i~~~~~~~~~  117 (225)
T d1i52a_          41 LLAHPRVKRVVIAISPGDSRFAQLPLANHPQITVVDGGD--ERADSVLAGLKAAG-DAQWVLVHDAARPCLHQDDLARLL  117 (225)
T ss_dssp             HHTSTTEEEEEEEECTTCCSGGGSGGGGCTTEEEEECCS--SHHHHHHHHHHTST-TCSEEEECCTTCTTCCHHHHHHHH
T ss_pred             HHhCccccccccccchhhhhhhhhhhccccccccccCCc--chhHHHHhhhcccC-ccceeeeeccCCCCCCHHHHHHHH
Confidence            456778899999996432  222222223333 222222  45567888888774 679999999999999999999999


Q ss_pred             HHHHcCCCceEEeecccCCCCccCCCCceEEEEcCCCceecccCCCCCCCCCCCCCCCCCeeEEeeeeeechHHHhh-Cc
Q 027992           81 KALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKI-YP  159 (215)
Q Consensus        81 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ip~~~~~~~~q~~p~~~~~~~~~~~~~~l~~-~~  159 (215)
                      ..+..+....+..  .+..       ++.+......+....    .  ..     ++.  .....+++.|....+.. +.
T Consensus       118 ~~~~~~~~~~v~~--~~~~-------d~~~~~~~~~~~~~~----~--~~-----~~~--~~~~~~~~~f~~~~l~~~~~  175 (225)
T d1i52a_         118 ALSETSRTGGILA--APVR-------DTMKRAEPGKNAIAH----T--VD-----RNG--LWHALTPQFFPRELLHDCLT  175 (225)
T ss_dssp             GGGGTCSSCEEEE--EECC-------SCEEEECTTSSSEEE----E--EC-----CTT--CEEEEEEEEEEHHHHHHHHH
T ss_pred             hhhhhcccccccc--ccee-------eccchhccccccccc----c--cc-----hHH--HHHHhhhhhhhhHHHHHHHH
Confidence            9887654444443  2332       344443222222110    0  01     111  23345667776655433 11


Q ss_pred             CCCCCCCCCccchhhhhhh-hcCCeeEEEEecCCCCCCCCHHHHHHHHHHHHh
Q 027992          160 GLHPTPLQLEEDLEQLKVL-ENGYKMKVIKVDHEAHGVDAPEDVEKIESFMRE  211 (215)
Q Consensus       160 ~~~~~~~~~~e~l~~~~~~-~~g~~v~~~~~~~~~idIdt~~Dl~~ae~il~~  211 (215)
                      ........   ..+...++ ..|.++.+++++..+++||||+||++||.+|++
T Consensus       176 ~~~~~~~~---~tD~~~l~~~~g~~v~~v~~~~~nikItt~eDl~~Ae~~l~r  225 (225)
T d1i52a_         176 RALNEGAT---ITDEASALEYCGFHPQLVEGRADNIKVTRPEDLALAEFYLTR  225 (225)
T ss_dssp             HHHHTTCC---CCSHHHHHHHTTCCCEEEECCTTCCCCCSHHHHHHHHHHHCC
T ss_pred             HHHhcCCC---CCcHHHHHHHCCCceEEEecCccccCcCCHHHHHHHHHHhCc
Confidence            11000001   11222333 379999999998899999999999999999863

>d1g97a2 c.68.1.5 (A:2-251) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: UDP-glucose pyrophosphorylase
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.07  E-value=7.9e-09  Score=79.42  Aligned_cols=196  Identities=16%  Similarity=0.087  Sum_probs=107.3

Q ss_pred             ccCCCCcEEEEcCcHHHH-HHHHHcCCeEEeCCCCCCCchHHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHHHH
Q 027992            6 HSFLFCGLVVATDDEKIA-ECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQ   84 (215)
Q Consensus         6 ~~~~~d~ivV~td~~~i~-~~~~~~g~~v~~~~~~~~~~~~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~~~   84 (215)
                      ....+++|+|+|.+.... .............+.. .+...++..+...+....+.+++++++.|++++..+.++++.+.
T Consensus        40 ~~~~~~~iivv~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~a~~~l~~~~~~~~~i~~~~~~~~~~~l~~l~~~~~  118 (250)
T d1g97a2          40 GAIQPEKTVTVVGHKAELVEEVLAGQTEFVTQSEQ-LGTGHAVMMTEPILEGLSGHTLVIAGDTPLITGESLKNLIDFHI  118 (250)
T ss_dssp             GGGCCSEEEEEECTTHHHHHHHTTTTSEEEECSSC-CCHHHHHHTTHHHHTTCCSEEEEEETTCTTCCHHHHHHHHHHHH
T ss_pred             HHcCCCeEEEecccccchhhhhccccccccccccc-cccchHHHHHHHhhhcccCcceEEecCCCccCHHHHHHHHHHHh
Confidence            345688888888654332 1112123333333322 23334566666666556678899999999999999999999887


Q ss_pred             cCCCceEEeecccCCCCccCCCCceEEEEcCCCceecccCCCCCCCCCCCCCCCCCeeEEeeeeeechHHHhhC-cCCCC
Q 027992           85 AAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIY-PGLHP  163 (215)
Q Consensus        85 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ip~~~~~~~~q~~p~~~~~~~~~~~~~~l~~~-~~~~~  163 (215)
                      .. ++..+....+...    .....+++.+.++....+.....+     ...+........+.|+|....+.++ ..+..
T Consensus       119 ~~-~~~~~~~~~~~~~----~~~~~~~~~~~~~~v~~~~~~~~~-----~~~~~~~~~~~~g~y~f~~~~l~~~l~~~~~  188 (250)
T d1g97a2         119 NH-KNVATILTAETDN----PFGYGRIVRNDNAEVLRIVEQKDA-----TDFEKQIKEINTGTYVFDNERLFEALKNINT  188 (250)
T ss_dssp             HT-TCSEEEEEEECSC----CTTSCEEEECTTCCEEEEECGGGC-----CHHHHTCCEEEEEEEEEEHHHHHHHHTTCCC
T ss_pred             hh-ccccccccceecc----cCCCceEEEeeceEEEEeeccccc-----cccccccceeeeeeeecchHHHHHHHHHhcc
Confidence            54 3333322233321    001223343444433322111100     0001111345677899987665543 22222


Q ss_pred             CCCCCccchhhh-h-hhhcCCeeEEEEec--CCCCCCCCHHHHHHHHHHHHhh
Q 027992          164 TPLQLEEDLEQL-K-VLENGYKMKVIKVD--HEAHGVDAPEDVEKIESFMRER  212 (215)
Q Consensus       164 ~~~~~~e~l~~~-~-~~~~g~~v~~~~~~--~~~idIdt~~Dl~~ae~il~~~  212 (215)
                      .......+++.. . +.+.|.+|..+..+  .+.+.|||++||+.||.+++++
T Consensus       189 ~~~~~~~~~~~~~~~~~~~g~~V~~~~~~~~~~~~gInt~~dL~~ae~~~~~~  241 (250)
T d1g97a2         189 NNAQGEYYITDVIGIFRETGEKVGAYTLKDFDESLGVNDRVALATAESVMRRR  241 (250)
T ss_dssp             CSTTCSCCGGGHHHHHHHTTCCEEEEECSSGGGGCCCSSHHHHHHHHHHHHHH
T ss_pred             CcchhhHHHhHHHHHHHHCCCeEEEEEcCCcceecCCCCHHHHHHHHHHHHHH
Confidence            221122223222 2 33468899988864  3567799999999999999865

>d2oi6a2 c.68.1.5 (A:4-251) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: UDP-glucose pyrophosphorylase
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.72  E-value=2.1e-07  Score=71.31  Aligned_cols=191  Identities=14%  Similarity=0.164  Sum_probs=102.1

Q ss_pred             ccCCCCcEEEEcCcH--HHHHHHHHcCCeEEeCCCCCCCch-HHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHH
Q 027992            6 HSFLFCGLVVATDDE--KIAECCQQFGADVIMTSESCRNGT-ERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKA   82 (215)
Q Consensus         6 ~~~~~d~ivV~td~~--~i~~~~~~~g~~v~~~~~~~~~~~-~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~   82 (215)
                      ....+++|+|++...  .+.+.........+.....  .|+ .++..+...+. ....++++.++.|+.....+..+...
T Consensus        41 ~~~~~~~iiiv~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~~~~~~~~i~-~~~~~~i~~~d~~~~~~~~~~~~~~~  117 (248)
T d2oi6a2          41 NELGAAHVHLVYGHGGDLLKQALKDDNLNWVLQAEQ--LGTGHAMQQAAPFFA-DDEDILMLYGDVPLISVETLQRLRDA  117 (248)
T ss_dssp             HHHTCSCEEEEESSCHHHHHHHCCCTTEEEEECSSC--CCHHHHHHHHGGGSC-TTSEEEEEETTCTTCCHHHHHHHHHH
T ss_pred             HHcCCcEEEeccCcccceeeeecccccccccccccC--cccHHHHHhhhhhhc-cccceeeecCccccccchhHHHHHHH
Confidence            334688999999643  3333322222222333222  444 45666666653 44578888999999999988887665


Q ss_pred             HHcCCCceEEeecccCCCCccCCCCceEEEEcCCCceecccCCCCCCCCCCCCCCCCCeeEEeeeeeechHHHhhC-cCC
Q 027992           83 LQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIY-PGL  161 (215)
Q Consensus        83 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ip~~~~~~~~q~~p~~~~~~~~~~~~~~l~~~-~~~  161 (215)
                      ......++.+   .+..     +|.....+..++|..........+     ...+........+.|+|....+.++ ..+
T Consensus       118 ~~~~~~~~~~---~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~l~~~  184 (248)
T d2oi6a2         118 KPQGGIGLLT---VKLD-----DPTGYGRITRENGKVTGIVEHKDA-----TDEQRQIQEINTGILIANGADMKRWLAKL  184 (248)
T ss_dssp             CCTTSEEEEE---EECS-----CCTTSCEEEEETTEEEEEECGGGC-----CTTGGGCCEEEEEEEEEEHHHHHHHHTTC
T ss_pred             hhccccceeE---EEec-----CCccccccccccCccceeeeccCC-----ChhhhhhhhhhhhhhccchHHHHHHHHHh
Confidence            4332222333   2221     233322222233433222111100     1112222456677788887666543 333


Q ss_pred             CCCCCCCccchh-hhh-hhhcCCeeEEEEec--CCCCCCCCHHHHHHHHHHHHhh
Q 027992          162 HPTPLQLEEDLE-QLK-VLENGYKMKVIKVD--HEAHGVDAPEDVEKIESFMRER  212 (215)
Q Consensus       162 ~~~~~~~~e~l~-~~~-~~~~g~~v~~~~~~--~~~idIdt~~Dl~~ae~il~~~  212 (215)
                      .........+++ ... +...|.+|..+..+  .+.++|||++||..||++++++
T Consensus       185 ~~~~~~~e~~ltd~~~~~~~~g~~v~~v~~~~~~e~~gI~t~eDL~~ae~i~~~~  239 (248)
T d2oi6a2         185 TNNNAQGEYYITDIIALAYQEGREIVAVHPQRLSEVEGVNNRLQLSRLERVYQSE  239 (248)
T ss_dssp             CCCSTTCSCCTTHHHHHHHHTTCCEEEECCSSGGGGCCCSSHHHHHHHHHHHHHH
T ss_pred             hccccchhhhhhHHHHHHHHCCCeEEEEEcCCHHHhCCCCCHHHHHHHHHHHHHH
Confidence            222211122232 223 33478899988764  2457899999999999999764

>d2dpwa1 c.68.1.19 (A:1-231) Uncharacterized protein TTHA0179 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: TTHA0179-like
domain: Uncharacterized protein TTHA0179
species: Thermus thermophilus [TaxId: 274]

Probab=98.71  E-value=3.8e-10  Score=87.00  Aligned_cols=75  Identities=16%  Similarity=0.197  Sum_probs=52.3

Q ss_pred             CCCCcEEEEcCcHHHHHHHHHcCCeEEeCCCCCCCchHHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHHHHcCC
Q 027992            8 FLFCGLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAP   87 (215)
Q Consensus         8 ~~~d~ivV~td~~~i~~~~~~~g~~v~~~~~~~~~~~~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~~~~~~   87 (215)
                      ..++.|+|+|+++...      .......+  ..+...++.+|+.++.   |.+++++||+||++++.|+.+++.+.. .
T Consensus        45 ~~~~~vvv~~~~~~~~------~~~~~~~~--~~~~~~~v~~al~~~~---~~~lv~~~D~P~i~~~~i~~l~~~~~~-~  112 (231)
T d2dpwa1          45 AGLSPVYVGENPGLVP------APALTLPD--RGGLLENLEQALEHVE---GRVLVATGDIPHLTEEAVRFVLDKAPE-A  112 (231)
T ss_dssp             TTCEEEEESCCSSCSS------CCSEEECC--CSSHHHHHHHHHHTCC---SEEEEEETTCTTCCHHHHHHHHHHCCS-C
T ss_pred             cCCCeEEeeeeccccc------eeeeeccc--chHHHHHHHHHHHhhc---CceEEeeCCCccCCHHHHHHHHHHhhh-c
Confidence            3578888888764321      11122222  2256678999988872   689999999999999999999998754 4


Q ss_pred             CceEEee
Q 027992           88 DAVFSTA   94 (215)
Q Consensus        88 ~~~i~~~   94 (215)
                      ++++++.
T Consensus       113 ~~~~~~~  119 (231)
T d2dpwa1         113 ALVYPIV  119 (231)
T ss_dssp             SEEEEEE
T ss_pred             CceEEEE
Confidence            6666654

>d2i5ea1 c.68.1.21 (A:1-208) Hypothetical protein MM2497 {Methanosarcina mazei [TaxId: 2209]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: MM2497-like
domain: Hypothetical protein MM2497
species: Methanosarcina mazei [TaxId: 2209]

Probab=97.75  E-value=4.1e-06  Score=63.09  Aligned_cols=65  Identities=18%  Similarity=0.162  Sum_probs=43.5

Q ss_pred             CCCCcEEEEcCcHHHHHHHHHcCCeEEeCCCCCCCchH-HHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHH
Q 027992            8 FLFCGLVVATDDEKIAECCQQFGADVIMTSESCRNGTE-RCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVK   81 (215)
Q Consensus         8 ~~~d~ivV~td~~~i~~~~~~~g~~v~~~~~~~~~~~~-~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~   81 (215)
                      ..++.|+++|++.+..+..  .+..+...  .  +|.. ++.+++..   .++.++++.+|.|++++++|.++++
T Consensus        43 ~~~~~v~~vs~~~~~~~~~--~~~~~~~~--~--~~L~~al~~a~~~---~~~~vliig~DlP~L~~~~l~~a~~  108 (208)
T d2i5ea1          43 AGIEQVDILSPSVYGLEEM--TEARVLLD--E--KDLNEALNRYLKE---AEEPVLIVMADLPLLSPEHIKEISS  108 (208)
T ss_dssp             TTCSEEEEEESSCTTCSSC--CSSEEEEC--C--SCHHHHHHHHHHH---CCSCEEEECSCCTTCCHHHHHHHTT
T ss_pred             CCCcEEEEEcCcHHHHHHh--hcCCcccC--C--CCHHHHHHHHHhc---CCCCEEEecCCcCcCCHHHHHHHHh
Confidence            4567888888765543222  23344332  1  3443 67777654   5688999999999999999998654

>d1lvwa_ c.68.1.6 (A:) RmlA (RfbA) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: glucose-1-phosphate thymidylyltransferase
domain: RmlA (RfbA)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.38  E-value=0.0055  Score=47.63  Aligned_cols=181  Identities=13%  Similarity=0.174  Sum_probs=93.1

Q ss_pred             cCCCCcEEEEcCc---HHHHHHH---HHcCCeE--EeCCCCCCCchH-HHHHHHHHhcCCCCEEEEecCCCCCCCHHHHH
Q 027992            7 SFLFCGLVVATDD---EKIAECC---QQFGADV--IMTSESCRNGTE-RCNEALQKLEKKYDIVVNIQGDEPLIEPEIID   77 (215)
Q Consensus         7 ~~~~d~ivV~td~---~~i~~~~---~~~g~~v--~~~~~~~~~~~~-~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~   77 (215)
                      ...+++++|+|..   +.++++.   .+++.++  +..+..  .|++ ++..+...+. +.+.++ +.++-+++.. .+.
T Consensus        46 ~~g~~~i~Iv~~~~~~~~~~~~~~~~~~~~~~i~~v~e~~~--~gta~Al~~a~~~l~-~~~~~l-i~~~d~~~~~-~~~  120 (295)
T d1lvwa_          46 LAGIRDILIISTPRDLPLYRDLLGDGSQFGVRFSYRVQEEP--RGIADAFIVGKDFIG-DSKVAL-VLGDNVFYGH-RFS  120 (295)
T ss_dssp             HTTCCEEEEEECTTTHHHHHHHHTTSGGGTSEEEEEECSSC--CCGGGHHHHTHHHHT-TSCEEE-EETTCCEECT-THH
T ss_pred             HCCCCeEEEEeCcccHHHHHHHhccchhcCCEEEEEECCCC--CCHHHHHHHHHHHcC-CCCEEE-EeCCcceech-hHH
Confidence            3468889888853   3344554   3457665  444433  4554 6777777773 334444 4566688765 455


Q ss_pred             HHHHHHHc-CCCceEEeecccCCCCccCCCCce-EEEEcCCCceecccCCCCCCCCCCCCCCCCCeeEEeeeeeechHHH
Q 027992           78 GVVKALQA-APDAVFSTAVTSLKPEDAFDPNRV-KCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFL  155 (215)
Q Consensus        78 ~~i~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~ip~~~~~~~~q~~p~~~~~~~~~~~~~~l  155 (215)
                      .++....+ ..++.+.  ..+..     +|... .+..+++|.+..|.+.+  ..       ........+.|+|....+
T Consensus       121 ~~~~~~~~~~~~~ti~--~~~~~-----~~~~yG~i~~~~~~~v~~~~EKp--~~-------~~s~~~~~Giy~~n~~if  184 (295)
T d1lvwa_         121 EILRRAASLEDGAVIF--GYYVR-----DPRPFGVVEFDSEGRVISIEEKP--SR-------PKSNYVVPGLYFYDNQVV  184 (295)
T ss_dssp             HHHHHHHTCCSSEEEE--EEECS-----CCTTSEEEEECTTSBEEEEEESC--SS-------CSCSEECCSEEEECTTHH
T ss_pred             HHHHHHHhCCCCeEEE--EEEcC-----CCccccEEEECCCCcEEEEeecc--cC-------cccceeecceEEECHHHH
Confidence            66666654 2333333  33432     33333 23346677666554321  11       111355677888877644


Q ss_pred             hhCcCCCCCCCCCccc-h-hhhh-hhhcCC-eeEEEEecCCCCCCCCHHHHHHHHHHHH
Q 027992          156 KIYPGLHPTPLQLEED-L-EQLK-VLENGY-KMKVIKVDHEAHGVDAPEDVEKIESFMR  210 (215)
Q Consensus       156 ~~~~~~~~~~~~~~e~-l-~~~~-~~~~g~-~v~~~~~~~~~idIdt~~Dl~~ae~il~  210 (215)
                      .-...+....  ..|. + +... .+..+. ++.....+..-+||+|++|+..|...++
T Consensus       185 ~~~~~~~~~~--~~e~~~~~~~~~~~~~~~~~~~~~~~~~~w~Digt~~~l~~~s~~i~  241 (295)
T d1lvwa_         185 EIARRIEPSD--RGELEITSVNEEYLRMGKLRVELMGRGMAWLDTGTHDGLLEASSFIE  241 (295)
T ss_dssp             HHHHHCCCCT--TSCCCHHHHHHHHHHTTCEEEEEECTTCEECCCSSHHHHHHHHHHHH
T ss_pred             HHHHhcCCCc--CCCeeccchHHHHHHhCCCeEEEcCCCcEEeCCCChHHHHHHHHHHH
Confidence            3222111111  1111 1 2222 222332 3333333467899999999999987653

>d1jyka_ c.68.1.13 (A:) CTP:phosphocholine cytidylytransferase LicC {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: CTP:phosphocholine cytidylytransferase LicC
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=97.33  E-value=0.00021  Score=53.26  Aligned_cols=61  Identities=10%  Similarity=0.095  Sum_probs=38.4

Q ss_pred             cCCCCcEEEEc--CcHHHHHHHHHcCCeEEeCCCCCCCch-HHHHHHHHHhcCCCCEEEEecCCCCCC
Q 027992            7 SFLFCGLVVAT--DDEKIAECCQQFGADVIMTSESCRNGT-ERCNEALQKLEKKYDIVVNIQGDEPLI   71 (215)
Q Consensus         7 ~~~~d~ivV~t--d~~~i~~~~~~~g~~v~~~~~~~~~~~-~~i~~~l~~~~~~~d~v~~~~~d~Pli   71 (215)
                      ...+++|+|+|  .++.|....++++++++..+.....|+ .++..|...+.   +.++++ +|..+.
T Consensus        46 ~~g~~~i~iv~g~~~e~i~~~~~~~~i~i~~~~~~~~~Gt~~sl~~a~~~l~---~~~ii~-~dd~~~  109 (229)
T d1jyka_          46 EKGINDIIIIVGYLKEQFDYLKEKYGVRLVFNDKYADYNNFYSLYLVKEELA---NSYVID-ADNYLF  109 (229)
T ss_dssp             HTTCCCEEEEECTTGGGGTHHHHHHCCEEEECTTTTTSCTHHHHHTTGGGCT---TEEEEE-TTEEES
T ss_pred             HhCCcccccccccchhhhhhhhhhccccccccccccccccccccccchhhhc---cccccc-cccccc
Confidence            34589999999  467788888889999865543433454 46666665552   234444 454443

>d1mc3a_ c.68.1.6 (A:) RffH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: glucose-1-phosphate thymidylyltransferase
domain: RffH
species: Escherichia coli [TaxId: 562]

Probab=97.30  E-value=0.0025  Score=49.79  Aligned_cols=183  Identities=16%  Similarity=0.143  Sum_probs=97.1

Q ss_pred             cCCCCcEEEEcC--cH-HHHHHH---HHcCCeE-EeCCCCCCCchH-HHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHH
Q 027992            7 SFLFCGLVVATD--DE-KIAECC---QQFGADV-IMTSESCRNGTE-RCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDG   78 (215)
Q Consensus         7 ~~~~d~ivV~td--~~-~i~~~~---~~~g~~v-~~~~~~~~~~~~-~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~   78 (215)
                      ...+++|+|+|.  .. .+.++.   .++|+.+ +..... +.|++ ++..+...+.  .+-++++.+|..|.... +..
T Consensus        44 ~~gi~~i~iv~~~~~~~~~~~~~~~g~~~gi~I~y~~Q~~-plGta~Ai~~a~~fi~--~~~~~lvlgddi~~~~~-~~~  119 (291)
T d1mc3a_          44 LAGIREILIITTPEDKGYFQRLLGDGSEFGIQLEYAEQPS-PDGLAQAFIIGETFLN--GEPSCLVLGDNIFFGQG-FSP  119 (291)
T ss_dssp             HTTCCEEEEEECTTTHHHHHHHHTTSGGGTCEEEEEECSS-CCCSTHHHHHTHHHHT--TSCEEEEETTEEEECSS-CHH
T ss_pred             HcCCCEEEEEeCcccHHHHHHHhCchHhhCcEEEEEECCC-CCchHHHHHHHHHHhC--CCCeEEEECCCcccCcC-HHH
Confidence            356899888774  23 345543   4578876 332222 24554 5666666663  34455567777776653 556


Q ss_pred             HHHHHHc-CCCceEEeecccCCCCccCCCCceE-EEEcCCCceecccCCCCCCCCCCCCCCCCCeeEEeeeeeechHHHh
Q 027992           79 VVKALQA-APDAVFSTAVTSLKPEDAFDPNRVK-CVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLK  156 (215)
Q Consensus        79 ~i~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~ip~~~~~~~~q~~p~~~~~~~~~~~~~~l~  156 (215)
                      +++...+ ..++.+.  ..++.     +|...- +..+++|.+..+.+.  |.       +........+.|+|..+.+.
T Consensus       120 ~l~~~~~~~~~atI~--~~~V~-----dP~~yGVve~d~~g~i~~i~EK--P~-------~p~Sn~a~~GiY~f~~~v~~  183 (291)
T d1mc3a_         120 KLRHVAARTEGATVF--GYQVM-----DPERFGVVEFDDNFRAISLEEK--PK-------QPKSNWAVTGLYFYDSKVVE  183 (291)
T ss_dssp             HHHHHTTCCSSEEEE--EEECS-----CCSSSBBCEEETTEEEEECCBS--CS-------SCSCSEEEEEEEECCTHHHH
T ss_pred             HHHHHHhCcCCcEEE--EEECC-----CcccCCCceeccCcceeEEEEC--CC-------CCCCCeEEEEEEEeChHHHH
Confidence            6666543 3343333  33442     233221 223677777655432  21       11113567888999876665


Q ss_pred             hCcCCCCCCCCCccchhhhh-hhhcCCeeEEEE-ec-CCCCCCCCHHHHHHHHHHHH
Q 027992          157 IYPGLHPTPLQLEEDLEQLK-VLENGYKMKVIK-VD-HEAHGVDAPEDVEKIESFMR  210 (215)
Q Consensus       157 ~~~~~~~~~~~~~e~l~~~~-~~~~g~~v~~~~-~~-~~~idIdt~~Dl~~ae~il~  210 (215)
                      ....+.++.-...|-.+... ++..| +..+.. +. ..-+|+.|+++|..|..+++
T Consensus       184 ~~~~lk~s~rgE~EItdl~~~~l~~~-~~~~~~~~~g~~W~D~Gt~~~l~~a~~~v~  239 (291)
T d1mc3a_         184 YAKQVKPSERGELEITSINQMYLEAG-NLTVELLGRGFAWLDTGTHDSLIEASTFVQ  239 (291)
T ss_dssp             HHHSCCCCSSSSCCHHHHHHHHHHTT-CEEEEECCTTCEEEECCSHHHHHHHHHHHH
T ss_pred             HHhcCCCCCCCceeehHHHHHHHHcC-CceEEEecCCCEEEeCCCHHHHHHHHHHHH
Confidence            44444333211111123333 33334 333333 32 45789999999999987663

>d1fxoa_ c.68.1.6 (A:) RmlA (RfbA) {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: glucose-1-phosphate thymidylyltransferase
domain: RmlA (RfbA)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.09  E-value=0.012  Score=45.67  Aligned_cols=183  Identities=15%  Similarity=0.153  Sum_probs=98.9

Q ss_pred             ccCCCCcEEEEcC---cHHHHHHH---HHcCCeE-EeCCCCCCCchH-HHHHHHHHhcCCCCEEEEecCCCCCCCHHHHH
Q 027992            6 HSFLFCGLVVATD---DEKIAECC---QQFGADV-IMTSESCRNGTE-RCNEALQKLEKKYDIVVNIQGDEPLIEPEIID   77 (215)
Q Consensus         6 ~~~~~d~ivV~td---~~~i~~~~---~~~g~~v-~~~~~~~~~~~~-~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~   77 (215)
                      ....+.+|+++|.   .+.+.++.   +++|+++ +....+ ..|++ ++..|...+. +.+.++++-+| - +...++.
T Consensus        43 ~~~Gi~ei~ii~~~~~~~~i~~~~~~~~~~g~~I~y~~q~~-~~Gta~ai~~a~~~i~-~~~~~lil~dD-~-~~~~dl~  118 (292)
T d1fxoa_          43 MLAGIREILIISTPQDTPRFQQLLGDGSNWGLDLQYAVQPS-PDGLAQAFLIGESFIG-NDLSALVLGDN-L-YYGHDFH  118 (292)
T ss_dssp             HHTTCCEEEEEECTTTHHHHHHHHTTSGGGTCEEEEEECSS-CCCGGGHHHHTHHHHT-TSEEEEEETTE-E-EECTTHH
T ss_pred             HHCCCCEEEEEeCcCCHHHHHHHhccccccCeEEEEccCCC-CCcHHHHHHhhhhhcC-CCceEEEEccc-c-ccCcCHH
Confidence            3457889876663   34555554   3468876 333323 24554 6777777773 33455555555 3 4445689


Q ss_pred             HHHHHHHcC-CCceEEeecccCCCCccCCCCceEEE-EcCCCceecccCCCCCCCCCCCCCCCCC-eeEEeeeeeechHH
Q 027992           78 GVVKALQAA-PDAVFSTAVTSLKPEDAFDPNRVKCV-VDNHGYAIYFSRGLIPYNKSGKVNPQFP-YLLHLGIQSYDSNF  154 (215)
Q Consensus        78 ~~i~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~ip~~~~~~~~q~~p-~~~~~~~~~~~~~~  154 (215)
                      ++++.+.++ .++.+.+  .++.     +|...-++ .+++|.+.-+-+.  |.        +.+ -....|.|+|....
T Consensus       119 ~ll~~h~~~~~~~~i~~--~~V~-----~p~~yGV~~~d~~~ki~~~~EK--P~--------~p~Snla~~G~Y~f~~~~  181 (292)
T d1fxoa_         119 ELLGSASQRQTGASVFA--YHVL-----DPERYGVVEFDQGGKAISLEEK--PL--------EPKSNYAVTGLYFYDQQV  181 (292)
T ss_dssp             HHHHHHHTCCSSEEEEE--EECS-----CGGGSEEEEECTTSCEEEEEES--CS--------SCSSSEEEEEEEEECTTH
T ss_pred             HHHHHHHhCCCCcEEEE--EECC-----CHHHCeEEEEcCCCCEeEEEEC--CC--------CCCCCcEEEEEEEEChHH
Confidence            999998653 3344433  3442     23333333 4677776655432  21        111 35577889998655


Q ss_pred             HhhCcCCCCCCCCCccchhhhh-hhhcCCeeEEEEec--CCCCCCCCHHHHHHHHHHHH
Q 027992          155 LKIYPGLHPTPLQLEEDLEQLK-VLENGYKMKVIKVD--HEAHGVDAPEDVEKIESFMR  210 (215)
Q Consensus       155 l~~~~~~~~~~~~~~e~l~~~~-~~~~g~~v~~~~~~--~~~idIdt~~Dl~~ae~il~  210 (215)
                      +.-...+.++.-...|-.+-.+ ++..| ++.+....  ..-+|+-|++|+..|..++.
T Consensus       182 ~~~~~~l~~s~rgE~eitD~~~~~l~~~-~~~~~~~~~~~~W~D~Gt~~~l~~a~~~v~  239 (292)
T d1fxoa_         182 VDIARDLKPSPRGELEITDVNRAYLERG-QLSVEIMGRGYAWLDTGTHDSLLEAGQFIA  239 (292)
T ss_dssp             HHHHHHCCCCTTSSCCHHHHHHHHHHTT-CEEEEECCTTSEEEECCSHHHHHHHHHHHH
T ss_pred             HHHHHhCCCCCCCchhhHHHHHHHHHcC-CeEEEEeCCCCEEEeCCCHHHHHHHHHHHH
Confidence            4433333222110011123333 33344 44444433  34789999999999987764

>d1e5ka_ c.68.1.8 (A:) Molybdenum cofactor biosynthesis protein MobA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Molybdenum cofactor biosynthesis protein MobA
domain: Molybdenum cofactor biosynthesis protein MobA
species: Escherichia coli [TaxId: 562]

Probab=96.84  E-value=0.0015  Score=47.04  Aligned_cols=71  Identities=15%  Similarity=0.146  Sum_probs=46.8

Q ss_pred             CCCcEEEEcCcHHHHHHHHHcCCeEEe-CCCCCCCchHHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHHH
Q 027992            9 LFCGLVVATDDEKIAECCQQFGADVIM-TSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKAL   83 (215)
Q Consensus         9 ~~d~ivV~td~~~i~~~~~~~g~~v~~-~~~~~~~~~~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~~   83 (215)
                      .++.|+|++...+-  .....+..+.. ......+....+..++...  ..|.++++.+|+|+++++.|+.+++..
T Consensus        43 ~~~~ivv~~~~~~~--~~~~~~~~v~~d~~~~~~~~~~g~~~~~~~~--~~~~vlv~~~D~P~i~~~~i~~L~~~~  114 (188)
T d1e5ka_          43 QLSHVVVNANRHQE--IYQASGLKVIEDSLADYPGPLAGMLSVMQQE--AGEWFLFCPCDTPYIPPDLAARLNHQR  114 (188)
T ss_dssp             HCSCEEEECSSSHH--HHHTTSCCEECCCTTCCCSHHHHHHHHHHHC--CSSEEEEEETTCTTCCTTHHHHHHHTC
T ss_pred             cccccccccCccHH--hhhhcCCCccccccccccchhHHHHHHHHhc--ccceEEEeccCCCCCCHHHHHHHHHhc
Confidence            35678888854331  23445666643 2223233444556666654  678999999999999999999987764

>d1yp2a2 c.68.1.6 (A:10-316) Glucose-1-phosphate adenylyltransferase small subunit, catalytic domain {Potato (Solanum tuberosum) [TaxId: 4113]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: glucose-1-phosphate thymidylyltransferase
domain: Glucose-1-phosphate adenylyltransferase small subunit, catalytic domain
species: Potato (Solanum tuberosum) [TaxId: 4113]

Probab=95.91  E-value=0.23  Score=37.67  Aligned_cols=192  Identities=13%  Similarity=0.145  Sum_probs=98.8

Q ss_pred             cCCCCcEEEEcC--cHHHHHHHHH-c----------CCeEEeCCCCC------CCch-HHHHHHHHHhc-CCCCEEEEec
Q 027992            7 SFLFCGLVVATD--DEKIAECCQQ-F----------GADVIMTSESC------RNGT-ERCNEALQKLE-KKYDIVVNIQ   65 (215)
Q Consensus         7 ~~~~d~ivV~td--~~~i~~~~~~-~----------g~~v~~~~~~~------~~~~-~~i~~~l~~~~-~~~d~v~~~~   65 (215)
                      ..+|++|+|+|.  .+.+.+...+ +          |+..+......      ..|+ .++..++..+. ...+.++++.
T Consensus        55 ~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ai~~~~~~i~~~~~~~~iv~~  134 (307)
T d1yp2a2          55 NSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPDWFQGTADAVRQYLWLFEEHTVLEYLILA  134 (307)
T ss_dssp             HTTCCEEEEEESCCCHHHHHHHHHHCC--------CCEEEEEESCSSTTSCCCCCSHHHHHHHTHHHHTTSCCSEEEEEC
T ss_pred             HcCCCEEEEEeccccccchhhhhcccccccccccccccceeeceeeeccccccccchhHHHHHhHHhhhccccceEEEec
Confidence            456899999994  4555544322 1          23332221111      1233 35677766664 3446788999


Q ss_pred             CCCCCCCHHHHHHHHHHHHc-CCCceEEeecccCCCCccCCCCceEEEEcCCCceecccCCCCC-----CCCCC------
Q 027992           66 GDEPLIEPEIIDGVVKALQA-APDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIP-----YNKSG------  133 (215)
Q Consensus        66 ~d~Pli~~~~i~~~i~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ip-----~~~~~------  133 (215)
                      ||.-+-.  ++..+++.++. +.++.+.....+..   ...+..+ +..+++|.+..|.+.+..     .....      
T Consensus       135 ~D~~~~~--d~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~gv-v~~d~~~~v~~~~Ek~~~~~~~~~~~~~~~~~~~  208 (307)
T d1yp2a2         135 GDHLYRM--DYEKFIQAHRETDADITVAALPMDEK---RATAFGL-MKIDEEGRIIEFAEKPQGEQLQAMKVDTTILGLD  208 (307)
T ss_dssp             SCEECCC--CHHHHHHHHHHTTCSEEEEEEEECHH---HHTTSEE-EEECTTSBEEEEEESCCHHHHHHTCCCGGGGSCC
T ss_pred             Ccceecc--chhhhhhhhhhccccceEEEEecccc---cccccce-EEECCCCcEEEEEECCCCcccccccccccccccc
Confidence            9985543  46777777754 44444443222110   0111222 223667776554322100     00000      


Q ss_pred             -CCCCCCCeeEEeeeeeechHHHhhC-cCCCCCCCCCccchhhh-hhhhcCCeeEEEEecCCCCCCCCHHHHHHHH
Q 027992          134 -KVNPQFPYLLHLGIQSYDSNFLKIY-PGLHPTPLQLEEDLEQL-KVLENGYKMKVIKVDHEAHGVDAPEDVEKIE  206 (215)
Q Consensus       134 -~~~q~~p~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~e~l~~~-~~~~~g~~v~~~~~~~~~idIdt~~Dl~~ae  206 (215)
                       ...+..+.....+.|+|..+.+... ...........  .+.. ..+..|.++..++.+..-.||+|++|+..|.
T Consensus       209 ~~~~~~~~~~~~~giyi~~~~~l~~~~~~~~~~~~~~~--~d~i~~li~~g~~v~~~~~~g~W~Digt~~~~~~a~  282 (307)
T d1yp2a2         209 DKRAKEMPFIASMGIYVISKDVMLNLLRDKFPGANDFG--SEVIPGATSLGMRVQAYLYDGYWEDIGTIEAFYNAN  282 (307)
T ss_dssp             HHHHHHCCEEEEEEEEEEEHHHHHHHHHTTCTTCCCTT--TTHHHHHHHTTCCEEEEECCSCCEECSSHHHHHHHH
T ss_pred             cchhhcccchhhCceEEECHHHHHHHhhhccccccchH--HHHHHHHHHCCCcEEEEEeCCeEEECcCHHHHHHHH
Confidence             0011122456677888887765432 11111111111  1222 2445788999888777789999999999996

>d1tzfa_ c.68.1.13 (A:) Glucose-1-phosphate cytidylyltransferase RfbF {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: Glucose-1-phosphate cytidylyltransferase RfbF
species: Salmonella typhimurium [TaxId: 90371]

Probab=94.48  E-value=0.51  Score=34.28  Aligned_cols=67  Identities=12%  Similarity=0.152  Sum_probs=39.7

Q ss_pred             eeEEeeeeeechHHHhhCcCCCCCCCCCccchhhhh-hhhcCCeeEEEEecCCCCCCCCHHHHHHHHHHHHhhc
Q 027992          141 YLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLK-VLENGYKMKVIKVDHEAHGVDAPEDVEKIESFMRERN  213 (215)
Q Consensus       141 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~l~~~~-~~~~g~~v~~~~~~~~~idIdt~~Dl~~ae~il~~~~  213 (215)
                      .....+.|.+....+........ .   .+. +... +...| ++..+..+..-.||||++|+..++.++++.+
T Consensus       185 ~~~~~G~y~~~~~~~~~i~~~~~-~---~~~-~~l~~l~~~~-~v~~~~~~g~W~didt~~d~~~~~~~~~~~~  252 (259)
T d1tzfa_         185 AMINGGFFVLNPSVIDLIDNDAT-T---WEQ-EPLMTLAQQG-ELMAFEHPGFWQPMDTLRDKVYLEGLWEKGK  252 (259)
T ss_dssp             CCEECCCEEECGGGGGGCCSTTC-C---TTT-HHHHHHHHTT-CEEEEEECSCEEECCSHHHHHHHHHHHHTTC
T ss_pred             eeecceeccccchhhhhcccCcC-c---cHH-HHHHHHHhcC-CeEEEEeCCEEEECCCHHHHHHHHHHHHcCC
Confidence            34556667777655443322110 0   111 1223 22345 6777776555679999999999999998753

>d2cu2a2 c.68.1.20 (A:1-268) Putative mannose-1-phosphate guanylyl transferase (GDP)/mannose-6-phosphate isomerase TTHA1750 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: mannose-1-phosphate guanylyl transferase
domain: Putative mannose-1-phosphate guanylyl transferase (GDP)/mannose-6-phosphate isomerase TTHA1750
species: Thermus thermophilus [TaxId: 274]

Probab=92.76  E-value=0.38  Score=36.13  Aligned_cols=87  Identities=8%  Similarity=0.069  Sum_probs=51.8

Q ss_pred             CCCCcEEEEcCcHHHHHHHHH--cCCeEEeCCCCCCCchH-HHHHHHHHh-cCCCCEEEEecCCCCCCCHHHHHHHHHHH
Q 027992            8 FLFCGLVVATDDEKIAECCQQ--FGADVIMTSESCRNGTE-RCNEALQKL-EKKYDIVVNIQGDEPLIEPEIIDGVVKAL   83 (215)
Q Consensus         8 ~~~d~ivV~td~~~i~~~~~~--~g~~v~~~~~~~~~~~~-~i~~~l~~~-~~~~d~v~~~~~d~Pli~~~~i~~~i~~~   83 (215)
                      ..++.++|++....- .+.+.  .+..++..+..  .|++ .+..++..+ ....|.++++.||.++........++...
T Consensus        49 ~~~~~i~i~~~~~~~-~~~~~~~~~~~ii~E~~~--~~t~~a~~~~~~~~~~~~~~~vlvl~~D~~~~~~~~~~~~i~~~  125 (268)
T d2cu2a2          49 VPPERTLLAVRRDQE-AVARPYADGIRLLLEPLG--RDTAGAVLLGVAEALKEGAERLLVLPADHYVGDDEAYREALATM  125 (268)
T ss_dssp             SCGGGEEEEEEGGGH-HHHGGGCSSSEEEEESSC--CHHHHHHHHHHHHHHHHTCSEEEEEESSCEESCHHHHHHHHHHH
T ss_pred             CCccchhhhhhHHHH-HHhhhhccccceeeeeec--CCcccchhhHHHHHhccCCceeEEEecchhhcccHHHHHHHHHH
Confidence            455788888853221 12233  34566554433  4554 444444333 23568899999999999999888777765


Q ss_pred             H--cCCCceEEeeccc
Q 027992           84 Q--AAPDAVFSTAVTS   97 (215)
Q Consensus        84 ~--~~~~~~i~~~~~~   97 (215)
                      .  ...+..+++...+
T Consensus       126 ~~~~~~~~~~~~~~~~  141 (268)
T d2cu2a2         126 LEAAEEGFVVALGLRP  141 (268)
T ss_dssp             HHHCCTTCEEEEEECC
T ss_pred             HHHHhcCCeEeeeccc
Confidence            3  2335555544344

>d1omza_ c.68.1.15 (A:) Alpha-1,4-N-acetylhexosaminyltransferase (Alpha-GalNAcT EXTL2) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Exostosin
domain: Alpha-1,4-N-acetylhexosaminyltransferase (Alpha-GalNAcT EXTL2)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=82.60  E-value=0.34  Score=34.45  Aligned_cols=43  Identities=14%  Similarity=0.190  Sum_probs=32.5

Q ss_pred             HHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHHHHcCCCceEE
Q 027992           47 CNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFS   92 (215)
Q Consensus        47 i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~~~~~~~~~i~   92 (215)
                      ...|++.+  ..|+|+++++|-- ..++.|+++++.+..+++..+.
T Consensus        73 ~n~~~~~a--~ge~i~~lD~D~~-~~~~~l~~l~~~~~~~~~~~v~  115 (265)
T d1omza_          73 RLQVFPEV--ETNAVLMVDDDTL-ISAQDLVFAFSIWQQFPDQIIG  115 (265)
T ss_dssp             GGSCCTTC--CSSEEEEECTTEE-ECHHHHHHHHHHHTTSTTSEEE
T ss_pred             hhhhHHhC--CcCEEEEeCcccC-CCHHHHHHHHHHHHhCCCccee
Confidence            34455544  5699999999976 5899999999999776665544

>d1xhba2 c.68.1.17 (A:95-422) Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain
domain: Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=81.27  E-value=2.8  Score=31.55  Aligned_cols=75  Identities=8%  Similarity=0.135  Sum_probs=48.1

Q ss_pred             CcEEEEcC---cH----HHHHHHHHcCCe--EEeCCCCCCCchH-HHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHH
Q 027992           11 CGLVVATD---DE----KIAECCQQFGAD--VIMTSESCRNGTE-RCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVV   80 (215)
Q Consensus        11 d~ivV~td---~~----~i~~~~~~~g~~--v~~~~~~~~~~~~-~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i   80 (215)
                      .+|||+=|   ++    .+.++.++....  ++..+..  .|.+ ....|+...  ..|+|+++++|.=+ .+..+..++
T Consensus        55 ~EIIvVDdgS~d~~~~~~l~~~~~~~~~~i~vi~~~~n--~G~~~a~N~Gi~~a--~gd~i~flD~D~~~-~p~~l~~l~  129 (328)
T d1xhba2          55 EEIVLVDDASERDFLKRPLESYVKKLKVPVHVIRMEQR--SGLIRARLKGAAVS--RGQVITFLDAHCEC-TAGWLEPLL  129 (328)
T ss_dssp             EEEEEEECSCCCGGGTHHHHHHHHSSSSCEEEEECSSC--CCHHHHHHHHHHHC--CSSEEEEEESSEEE-CTTCHHHHH
T ss_pred             eEEEEEECCCChhhHHHHHHHHHHhcCCCeEEEEeccc--ccchHHHHHHHHhh--hcceeeecCccccc-ChhHHHHHH
Confidence            36777753   22    233555555443  3444433  4554 445667665  56899999999864 899999999


Q ss_pred             HHHHcCCCce
Q 027992           81 KALQAAPDAV   90 (215)
Q Consensus        81 ~~~~~~~~~~   90 (215)
                      +.+.++...+
T Consensus       130 ~~~~~~~~~~  139 (328)
T d1xhba2         130 ARIKHDRRTV  139 (328)
T ss_dssp             HHHHHCTTEE
T ss_pred             HHHhcCCCeE
Confidence            9997654443