Citrus Sinensis ID: 028112

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210---
Protein Sequence
MAAIAWPYKLSPKVDCSHEYSKSVKKLTITPHYLSFSSSSTEQNIKFPVSKTNHLSNTTANSPLYATLNGPRGFGPPPKKTKKAKKPKTGNDSDDDEDEEGDEAEAGVIPEIVTNRMISRIGFTVGIPLLVGLLFFPFFYYLKVVLKIDVPSWLPVIVSFIFFGAALLGVNYGIVSSSWDPLREGSLLGWNEAQRNWPVFWQSLWSGGGSRKK
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEccEEcccHHHHHHHHHHHHHHHHHHHHEEEccccccccccccccHHHHHHHHHHHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
ccccccccEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccccHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHEEEEcccccccccccccHHHHHHHHHHHHHHHHHccccccc
Coil and Loop (DISEMBL)
maaiawpyklspkvdcsheysKSVKkltitphylsfssssteqnikfpvsktnhlsnttansplyatlngprgfgpppkktkkakkpktgndsdddedeegdeaeagvipeiVTNRMISRIGFTVGIPLLVGLLFFPFFYYLKVVLkidvpswlpVIVSFIFFGAALLGVNYgivssswdplregsllgwNEAQRNWPVFWQSlwsgggsrkk
Flexible Loop (DISEMBL)
maaiawpyklspkvdcSHEYSKSVKKLTITPHYLSFSSSSTEQNIKFPVSKTNHLSNTTANSPLYATlngprgfgpppkktkkakkpktgndsdddedeegdeaeagvipeivtNRMISRIGFTVGIPLLVGLLFFPFFYYLKVVLKIDVPSWLPVIVSFIFFGAALLGVNYGIVSSSWDPLREGSLLGWNEAQRNWPVFWQslwsgggsrkk
Low Complexity Region (SEG)
MAAIAWPYKLSPKVDCSHEYSKSVKKLTITPHYLSFSSSSTEQNIKFPVSKTNHLSNTTANSPLYATLNGPRGFGpppkktkkakkpktGNDSdddedeegdeaeagVIPEIVTNRMISRIGFTvgipllvgllffpffyylkvvlKIDVPSWLPVIVSFIFFGAALLGVNYGIVSSSWDPLREGSLLGWNEAQRNWPVFWQSLWSGGGSRKK
Disordered region (IsUnstruct)
***IAWPYKLSPKVDCSHEYSKSVKKLTITPHYL************************************************************************GVIPEIVTNRMISRIGFTVGIPLLVGLLFFPFFYYLKVVLKIDVPSWLPVIVSFIFFGAALLGVNYGIVSSSWDPLREGSLLGWNEAQRNWPVFWQSLWS*******
Disordered Region (DISOPRED)
*****W**KLSPKVDC*HEYSKSVKKLTI**********************************************************************************IVTNRMISRIGFTVGIPLLVGLLFFPFFYYLKVVLKIDVPSWLPVIVSFIFFGAALLGVNYGIVSSSWDPLREGSLLGWNEAQRNWPVFWQ***********
Disordered Region (DISEMBL)
MAAIAWPYKLSPKVDCSHEYSKSVKKLTITPHYLSFSSSSTEQNIKFPVSKTNHLSNTTANSPLYATLNGPRGFGP***************************AEAGVIPEIVTNRMISRIGFTVGIPLLVGLLFFPFFYYLKVVLKIDVPSWLPVIVSFIFFGAALLGVNYGIVSSSWDPLREGSLLGWNEAQRNWPVFWQSLW********
Disordered Region (DISPRO)
************************KKLTITPH**************************************************************************GVIPEIVTNRMISRIGFTVGIPLLVGLLFFPFFYYLKVVLKIDVPSWLPVIVSFIFFGAALLGVNYGIVSSSWDPLREGSLLGWNEAQRNWPVFWQSLWSG******
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAAIAWPYKLSPKVDCSHEYSKSVKKLTITPHYLSFSSSSTEQNIKFPVSKTNHLSNTTANSPLYATLNGPRGFGPPPKKTKKAKKPKTGNDSDDDEDEEGDEAEAGVIPEIVTNRMISRIGFTVGIPLLVGLLFFPFFYYLKVVLKIDVPSWLPVIVSFIFFGAALLGVNYGIVSSSWDPLREGSLLGWNEAQRNWPVFWQSLWSGGGSRKK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	213	2.2.26 [Sep-21-2011]
O49668	214	Protein PAM68, chloroplas	yes	no	0.971	0.967	0.568	2e-51
Q9LTD9	168	Uncharacterized protein P	no	no	0.422	0.535	0.377	8e-12

>sp|O49668|PAM68_ARATH Protein PAM68, chloroplastic OS=Arabidopsis thaliana GN=PAM68 PE=1 SV=1

 Score =  202 bits (514), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 124/218 (56%), Positives = 157/218 (72%), Gaps = 11/218 (5%)

Query: 1   MAAIAWPYKLSPKVDCSHEYSKSVKKLTITPHYLSFSSSSTEQNIKFPVSKTNHLSNTTA 60
           MA++   +KLS     S +   + K+ +     L      T+  +   ++  N L   + 
Sbjct: 1   MASVPCSFKLSAHRRSSSKLDGNNKQCSSLVERLR---DKTKSQVPKSITCINRL-EISR 56

Query: 61  NSPLYATLNGPRGFGPPPKKTKKAKKPKTGNDSDDDEDEEGDEA-------EAGVIPEIV 113
            +PL+AT+N P+GFGPPPKKTKK+KKPK GN SD+D+D+E ++        E GVIPEIV
Sbjct: 57  IAPLHATMNSPKGFGPPPKKTKKSKKPKPGNQSDEDDDDEDEDDDDEEDERERGVIPEIV 116

Query: 114 TNRMISRIGFTVGIPLLVGLLFFPFFYYLKVVLKIDVPSWLPVIVSFIFFGAALLGVNYG 173
           TNRMISR+GFTVG+PL +GLLFFPFFYYLKV LK+DVP+W+P IVSF+FFG AL GV+YG
Sbjct: 117 TNRMISRMGFTVGLPLFIGLLFFPFFYYLKVGLKVDVPTWVPFIVSFVFFGTALAGVSYG 176

Query: 174 IVSSSWDPLREGSLLGWNEAQRNWPVFWQSLWSGGGSR 211
           IVSSSWDPLREGSLLGWNEA++NWPVFWQS W+    R
Sbjct: 177 IVSSSWDPLREGSLLGWNEAKKNWPVFWQSFWNSSDKR 214

Involved in early steps in photosystem II (PSII) biogenesis and in maturation and stability of newly synthesized psbA protein.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9LTD9|Y5278_ARATH Uncharacterized protein PAM68-like OS=Arabidopsis thaliana GN=At5g52780 PE=2 SV=1

 Score = 70.5 bits (171), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 34/90 (37%), Positives = 51/90 (56%)

Query: 113 VTNRMISRIGFTVGIPLLVGLLFFPFFYYLKVVLKIDVPSWLPVIVSFIFFGAALLGVNY 172
           V  RM+ RI  +VG PL +G+        LK     DVP W+P + + + FG++ LG+ Y
Sbjct: 76  VFERMMGRIVVSVGTPLGLGVAILKVLEVLKDRNVWDVPLWVPYLTTLVTFGSSALGIAY 135

Query: 173 GIVSSSWDPLREGSLLGWNEAQRNWPVFWQ 202
           G +S++ DP +  SL G  EA+ NW   W+
Sbjct: 136 GSLSTNLDPAKTNSLFGLKEAKENWVEMWK 165

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	213
255557685	220	conserved hypothetical protein [Ricinus	0.835	0.809	0.673	7e-55
42572949	214	uncharacterized protein [Arabidopsis tha	0.971	0.967	0.568	8e-50
449456765	213	PREDICTED: protein PAM68, chloroplastic-	0.981	0.981	0.562	3e-49
297804232	214	hypothetical protein ARALYDRAFT_492947 [	0.971	0.967	0.555	4e-49
224138364	226	predicted protein [Populus trichocarpa]	0.920	0.867	0.589	9e-48
225466099	196	PREDICTED: protein PAM68, chloroplastic	0.863	0.938	0.624	1e-46
357484665	202	hypothetical protein MTR_5g027010 [Medic	0.873	0.920	0.531	1e-46
356531491	211	PREDICTED: protein PAM68, chloroplastic-	0.859	0.867	0.593	3e-45
356496441	208	PREDICTED: protein PAM68, chloroplastic-	0.779	0.798	0.637	4e-44
296084201	136	unnamed protein product [Vitis vinifera]	0.488	0.764	0.817	5e-43

>gi|255557685|ref|XP_002519872.1| conserved hypothetical protein [Ricinus communis] gi|223540918|gb|EEF42476.1| conserved hypothetical protein [Ricinus communis]

 Score =  219 bits (557), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 124/184 (67%), Positives = 145/184 (78%), Gaps = 6/184 (3%)

Query: 34  LSFSSSSTEQNIKFPVSKTNHLSNTTANS---PLYATLNGPRGFGPPPKKTKKAKKPKTG 90
            +FS S  +Q  +FP+SK N   N    S   PLYATLN PRGFGP PKKTK+ KK KT 
Sbjct: 37  FTFSLSPIKQASQFPISKQNFYPNQYHFSYPKPLYATLNSPRGFGPSPKKTKRTKKLKTV 96

Query: 91  N---DSDDDEDEEGDEAEAGVIPEIVTNRMISRIGFTVGIPLLVGLLFFPFFYYLKVVLK 147
           N   D DDD +++ DE +AG+IPE+VTNRMISR+GF+VG+PL +GLLFFPFFYYLKV LK
Sbjct: 97  NPNDDDDDDNNDDDDEQDAGIIPEVVTNRMISRMGFSVGVPLFIGLLFFPFFYYLKVGLK 156

Query: 148 IDVPSWLPVIVSFIFFGAALLGVNYGIVSSSWDPLREGSLLGWNEAQRNWPVFWQSLWSG 207
           IDVP+W+P IVSF FFG ALLGV+YGIVSSSWDP+REGSLLGWNEAQ+NWPVFWQS W  
Sbjct: 157 IDVPTWVPYIVSFFFFGTALLGVSYGIVSSSWDPMREGSLLGWNEAQKNWPVFWQSFWGR 216

Query: 208 GGSR 211
            G +
Sbjct: 217 SGKK 220

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42572949|ref|NP_974571.1| uncharacterized protein [Arabidopsis thaliana] gi|75098840|sp|O49668.1|PAM68_ARATH RecName: Full=Protein PAM68, chloroplastic; AltName: Full=PHOTOSYNTHESIS AFFECTED MUTANT 68; Flags: Precursor gi|2828285|emb|CAA16699.1| putative protein [Arabidopsis thaliana] gi|7268705|emb|CAB78912.1| putative protein [Arabidopsis thaliana] gi|119360097|gb|ABL66777.1| At4g19100 [Arabidopsis thaliana] gi|332658740|gb|AEE84140.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  202 bits (514), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 124/218 (56%), Positives = 157/218 (72%), Gaps = 11/218 (5%)

Query: 1   MAAIAWPYKLSPKVDCSHEYSKSVKKLTITPHYLSFSSSSTEQNIKFPVSKTNHLSNTTA 60
           MA++   +KLS     S +   + K+ +     L      T+  +   ++  N L   + 
Sbjct: 1   MASVPCSFKLSAHRRSSSKLDGNNKQCSSLVERLR---DKTKSQVPKSITCINRL-EISR 56

Query: 61  NSPLYATLNGPRGFGPPPKKTKKAKKPKTGNDSDDDEDEEGDEA-------EAGVIPEIV 113
            +PL+AT+N P+GFGPPPKKTKK+KKPK GN SD+D+D+E ++        E GVIPEIV
Sbjct: 57  IAPLHATMNSPKGFGPPPKKTKKSKKPKPGNQSDEDDDDEDEDDDDEEDERERGVIPEIV 116

Query: 114 TNRMISRIGFTVGIPLLVGLLFFPFFYYLKVVLKIDVPSWLPVIVSFIFFGAALLGVNYG 173
           TNRMISR+GFTVG+PL +GLLFFPFFYYLKV LK+DVP+W+P IVSF+FFG AL GV+YG
Sbjct: 117 TNRMISRMGFTVGLPLFIGLLFFPFFYYLKVGLKVDVPTWVPFIVSFVFFGTALAGVSYG 176

Query: 174 IVSSSWDPLREGSLLGWNEAQRNWPVFWQSLWSGGGSR 211
           IVSSSWDPLREGSLLGWNEA++NWPVFWQS W+    R
Sbjct: 177 IVSSSWDPLREGSLLGWNEAKKNWPVFWQSFWNSSDKR 214

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449456765|ref|XP_004146119.1| PREDICTED: protein PAM68, chloroplastic-like [Cucumis sativus] gi|449509526|ref|XP_004163614.1| PREDICTED: protein PAM68, chloroplastic-like [Cucumis sativus]

 Score =  200 bits (508), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 122/217 (56%), Positives = 155/217 (71%), Gaps = 8/217 (3%)

Query: 1   MAAIAWPYKLSPKVDCSHEYSKSVKKLTITPHYLSFSSSSTEQNIKFPVSKTNHLSNTTA 60
           MAAIA    L P    +    +  K    + H  S +  +   N++  +++  + ++T  
Sbjct: 1   MAAIAGSLNL-PLAPSNLPLLRIKKNCKFSLHIKS-NERNCFPNLRPTINQNQNQTHTNR 58

Query: 61  NSPLYATLNGPRGFGPPPKKTKKAKKPKTGNDSDDDEDEEGDEAE----AGVIPEIVTNR 116
            + L ATL  P+GFGP  +K K  K  + G++ DD+E+EE ++ E     GVIPE+VTNR
Sbjct: 59  PTSLNATLRRPKGFGPASRKKKTKKTRREGSEDDDNEEEEEEDEEEEEEGGVIPEVVTNR 118

Query: 117 MISRIGFTVGIPLLVGLLFFPFFYYLKVVLKIDVPSWLPVIVSFIFFGAALLGVNYGIVS 176
           M+SR+GFTVGIPL +GLLFFPFFYYLKV LKIDVPSW+PVIVSF FFG+ALLGV+YGIVS
Sbjct: 119 MMSRMGFTVGIPLFIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSYGIVS 178

Query: 177 SSWDPLREGSLLGWNEAQRNWPVFWQSLWSGGGSRKK 213
           SSWDPLREGSLLGWNEAQ+NWPVFW+S+W  GGS KK
Sbjct: 179 SSWDPLREGSLLGWNEAQKNWPVFWKSIW--GGSNKK 213

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297804232|ref|XP_002870000.1| hypothetical protein ARALYDRAFT_492947 [Arabidopsis lyrata subsp. lyrata] gi|297315836|gb|EFH46259.1| hypothetical protein ARALYDRAFT_492947 [Arabidopsis lyrata subsp. lyrata]

 Score =  199 bits (507), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 121/218 (55%), Positives = 154/218 (70%), Gaps = 11/218 (5%)

Query: 1   MAAIAWPYKLSPKVDCSHEYSKSVKKLTITPHYLSFSSSSTEQNIKFPVSKTNHLSNTTA 60
           MA++   +KLS     S ++  + K+ +     L      T+  +   ++  N L     
Sbjct: 1   MASVPCSFKLSAHPRSSSKHDGNYKQCSSLVERLR---DKTKSQVPKSITCNNRL-EILR 56

Query: 61  NSPLYATLNGPRGFGPPPKKTKKAKKPKTGNDSDDDEDEEGDEAEA-------GVIPEIV 113
            SPL+AT+N PRGFGPPPKK KK+KKPK GN SD ++D+E ++ +        GVIPEIV
Sbjct: 57  ISPLHATMNSPRGFGPPPKKIKKSKKPKPGNQSDKEDDDEDEDDDDDEDERERGVIPEIV 116

Query: 114 TNRMISRIGFTVGIPLLVGLLFFPFFYYLKVVLKIDVPSWLPVIVSFIFFGAALLGVNYG 173
           TNRMISR+GFTVG+PL +GLLFFPFFYYLKV LK+DVP+W+P IVSF+FFG AL GV+YG
Sbjct: 117 TNRMISRMGFTVGLPLFIGLLFFPFFYYLKVGLKVDVPTWVPFIVSFVFFGTALAGVSYG 176

Query: 174 IVSSSWDPLREGSLLGWNEAQRNWPVFWQSLWSGGGSR 211
           IVSSSWDPLR+GSLLGWNEA++NWPVFWQS  +    R
Sbjct: 177 IVSSSWDPLRKGSLLGWNEAKKNWPVFWQSFRNSSDKR 214

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224138364|ref|XP_002326584.1| predicted protein [Populus trichocarpa] gi|222833906|gb|EEE72383.1| predicted protein [Populus trichocarpa]

 Score =  195 bits (496), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 122/207 (58%), Positives = 150/207 (72%), Gaps = 11/207 (5%)

Query: 4   IAWPYKLSPKVDCSHEYSKSVKKLTITPHYLSFSSSSTEQNIKFPVSKTNHLSNTTA--- 60
            +WPYKLS       +  +  ++ + +P  L       +Q ++FPV       N +    
Sbjct: 18  FSWPYKLS-STSLFSKIDRICERASNSPSSLV----PAKQTLRFPVPIPGFFQNQSRLSH 72

Query: 61  NSPLYATLNGPRGFGPPPKKTKKAKKPKTGNDSDDDEDEEGDEAE---AGVIPEIVTNRM 117
            S LYATLN PRGFG PPK++KK KK K GND DDD+++E +E E   AGVIPE+VTNRM
Sbjct: 73  PSSLYATLNSPRGFGQPPKRSKKTKKSKPGNDEDDDDEDEEEEQEEPDAGVIPEVVTNRM 132

Query: 118 ISRIGFTVGIPLLVGLLFFPFFYYLKVVLKIDVPSWLPVIVSFIFFGAALLGVNYGIVSS 177
           ++R+G +VG PL VG+LFFPFFYYLKV LKIDVP+W+P IVSFIFFG+ALLGV+YGIVSS
Sbjct: 133 MTRMGISVGAPLFVGVLFFPFFYYLKVGLKIDVPTWVPFIVSFIFFGSALLGVSYGIVSS 192

Query: 178 SWDPLREGSLLGWNEAQRNWPVFWQSL 204
           SWDP REGS  GWNEAQ+NWPVFWQSL
Sbjct: 193 SWDPKREGSFWGWNEAQKNWPVFWQSL 219

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225466099|ref|XP_002266174.1| PREDICTED: protein PAM68, chloroplastic [Vitis vinifera] gi|147866231|emb|CAN79943.1| hypothetical protein VITISV_021078 [Vitis vinifera]

 Score =  192 bits (487), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 118/189 (62%), Positives = 143/189 (75%), Gaps = 5/189 (2%)

Query: 28  TITPHYLSFSSSSTEQNIKFPVSKTNHLSNTTA--NSPLYATLNGPRGFGPPPKKTKKAK 85
           T TP     SS+      +FP+S     S      ++P  A+LN P+GFGP P+KT+K K
Sbjct: 8   TTTPLISPPSSTPALYISQFPISTPKLYSKNRLLHSTPPCASLNRPKGFGPSPRKTEKRK 67

Query: 86  KPK---TGNDSDDDEDEEGDEAEAGVIPEIVTNRMISRIGFTVGIPLLVGLLFFPFFYYL 142
           K K   + ++ +++E+EEG EAE GVIPEIVTNRMISR+GF+VGIPL++GLLFFPFFYYL
Sbjct: 68  KLKKNYSDDEDEEEEEEEGAEAEEGVIPEIVTNRMISRMGFSVGIPLMIGLLFFPFFYYL 127

Query: 143 KVVLKIDVPSWLPVIVSFIFFGAALLGVNYGIVSSSWDPLREGSLLGWNEAQRNWPVFWQ 202
           KV LKIDVP+W+P IVSF FFG+ALLGV+YGIVSSSWDPLREGS LGW EAQ NWPVFWQ
Sbjct: 128 KVGLKIDVPTWVPFIVSFFFFGSALLGVSYGIVSSSWDPLREGSFLGWTEAQNNWPVFWQ 187

Query: 203 SLWSGGGSR 211
           SLW   G +
Sbjct: 188 SLWGRSGKK 196

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357484665|ref|XP_003612620.1| hypothetical protein MTR_5g027010 [Medicago truncatula] gi|355513955|gb|AES95578.1| hypothetical protein MTR_5g027010 [Medicago truncatula]

 Score =  192 bits (487), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 111/209 (53%), Positives = 141/209 (67%), Gaps = 23/209 (11%)

Query: 10  LSPKVDCSHEYSKSVKKLTITPHYLSFSSSSTEQNIKFPVSKTNHLSNTTANSPLYATLN 69
           L+P+    H    ++  LT   H+      S  ++ +F      H S+     P+ +TL 
Sbjct: 10  LNPQFLHKHVRHNTIYILTNKSHF------SIHRSSQF------HFSHIV---PIQSTLK 54

Query: 70  GPRGFGPPPKKTKKAKKPKTGNDSDDDEDEEGDEAE------AGVIPEIVTNRMISRIGF 123
           GP+GFGP PKK  K  K    N  ++DED++ +  E       G+IPE+VTNRMI R+  
Sbjct: 55  GPKGFGPSPKKKNKTIKNLKKNKEEEDEDDDEEYEEEEDRREQGIIPEVVTNRMIGRMAL 114

Query: 124 TVGIPLLVGLLFFPFFYYLKVVLKIDVPSWLPVIVSFIFFGAALLGVNYGIVSSSWDPLR 183
           +VGIPL VGLLFFPFFYYLKV LKIDVP+W+P +VSF FFG+ALLGV+YGIVS+SWDPLR
Sbjct: 115 SVGIPLSVGLLFFPFFYYLKVGLKIDVPNWVPFLVSFFFFGSALLGVSYGIVSASWDPLR 174

Query: 184 EGSLLGWNEAQRNWPVFWQSLWSGGGSRK 212
           EGSLLGW EAQ+NWPVFW+SL   GGS+K
Sbjct: 175 EGSLLGWTEAQKNWPVFWKSL--RGGSQK 201

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356531491|ref|XP_003534311.1| PREDICTED: protein PAM68, chloroplastic-like [Glycine max]

 Score =  187 bits (475), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 111/187 (59%), Positives = 137/187 (73%), Gaps = 4/187 (2%)

Query: 30  TPHYLSFSSSSTEQNIKFPVSKTNHLSNTTAN-SPLYATLNGPRGFGPPPKKTKKAKKPK 88
            P  +S+ S + +    F  S+ +H  +  ++ +PL AT   P+GFGP P+K KK+KK K
Sbjct: 24  APRRISYLSGNVKSKFPFHRSEIHHQVHYFSHIAPLGATFKEPKGFGPTPRKRKKSKKMK 83

Query: 89  TGNDSDDDEDEEGDEA---EAGVIPEIVTNRMISRIGFTVGIPLLVGLLFFPFFYYLKVV 145
                 +DE+EE DE    + GVIPE+VTNRM++R+  +VGIPL VGLLFFP FYYLKV 
Sbjct: 84  KDYGEGEDEEEEEDEEEEPDRGVIPEVVTNRMMNRMAVSVGIPLGVGLLFFPLFYYLKVG 143

Query: 146 LKIDVPSWLPVIVSFIFFGAALLGVNYGIVSSSWDPLREGSLLGWNEAQRNWPVFWQSLW 205
           LKIDVP+W+P IVSF FFG+ALLGV+YGIVSSSWDPLREGS  GW EAQ+NWPVFWQS  
Sbjct: 144 LKIDVPTWVPFIVSFFFFGSALLGVSYGIVSSSWDPLREGSFWGWTEAQKNWPVFWQSFR 203

Query: 206 SGGGSRK 212
            GGGSRK
Sbjct: 204 GGGGSRK 210

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356496441|ref|XP_003517076.1| PREDICTED: protein PAM68, chloroplastic-like [Glycine max]

 Score =  183 bits (465), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 109/171 (63%), Positives = 136/171 (79%), Gaps = 5/171 (2%)

Query: 46  KFPV--SKTNHLSNTTAN-SPLYATLNGPRGFGPPPKKTKKAKKPKTGNDSDDDEDEEGD 102
           +FP+  S+ +H  +  ++ +P+ AT   P+GFGP PKK KK+KK +   + +DDE+EE +
Sbjct: 38  RFPIYRSEIHHQVHYFSHLAPICATFKEPKGFGPTPKKKKKSKKMRRDYEEEDDEEEEEE 97

Query: 103 EA-EAGVIPEIVTNRMISRIGFTVGIPLLVGLLFFPFFYYLKVVLKIDVPSWLPVIVSFI 161
           E  + GVIPE+VTNRM+SR+  +VGIPL +GLLFFPFFYYLKV LKIDVP+W+P IVSF 
Sbjct: 98  EEPDRGVIPEVVTNRMMSRMAVSVGIPLGIGLLFFPFFYYLKVGLKIDVPTWVPFIVSFF 157

Query: 162 FFGAALLGVNYGIVSSSWDPLREGSLLGWNEAQRNWPVFWQSLWSGGGSRK 212
           FFG+ALLGV+YGIVSSSWDPLREGS  GW EAQ+NWPVFWQSL  GG SRK
Sbjct: 158 FFGSALLGVSYGIVSSSWDPLREGSFWGWTEAQKNWPVFWQSL-RGGESRK 207

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296084201|emb|CBI24589.3| unnamed protein product [Vitis vinifera]

 Score =  179 bits (455), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 85/104 (81%), Positives = 94/104 (90%)

Query: 108 VIPEIVTNRMISRIGFTVGIPLLVGLLFFPFFYYLKVVLKIDVPSWLPVIVSFIFFGAAL 167
           VIPEIVTNRMISR+GF+VGIPL++GLLFFPFFYYLKV LKIDVP+W+P IVSF FFG+AL
Sbjct: 33  VIPEIVTNRMISRMGFSVGIPLMIGLLFFPFFYYLKVGLKIDVPTWVPFIVSFFFFGSAL 92

Query: 168 LGVNYGIVSSSWDPLREGSLLGWNEAQRNWPVFWQSLWSGGGSR 211
           LGV+YGIVSSSWDPLREGS LGW EAQ NWPVFWQSLW   G +
Sbjct: 93  LGVSYGIVSSSWDPLREGSFLGWTEAQNNWPVFWQSLWGRSGKK 136

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	213
TAIR|locus:1006589876	214	PAM68 "AT4G19100" [Arabidopsis	0.971	0.967	0.403	3.1e-35
TAIR|locus:2149644	168	AT5G52780 "AT5G52780" [Arabido	0.441	0.559	0.308	1.1e-09

TAIR|locus:1006589876 PAM68 "AT4G19100" [Arabidopsis thaliana (taxid:3702)]

 Score = 381 (139.2 bits), Expect = 3.1e-35, P = 3.1e-35
 Identities = 88/218 (40%), Positives = 113/218 (51%)

Query:     1 MAAIAWPYKLSPKVDCSHEYSKSVKKLTITPHYLSFSSSSTEQNIKFPVSKTNHLSNTTA 60
             MA++   +KLS     S +   + K+ +     L      T+  +   ++  N L  +  
Sbjct:     1 MASVPCSFKLSAHRRSSSKLDGNNKQCSSLVERLR---DKTKSQVPKSITCINRLEISRI 57

Query:    61 NSPLYATLNGPRGFGXXXXXXXXXXXXXXGN-------DSXXXXXXXXXXXXXXVIPEIV 113
              +PL+AT+N P+GFG              GN       D               VIPEIV
Sbjct:    58 -APLHATMNSPKGFGPPPKKTKKSKKPKPGNQSDEDDDDEDEDDDDEEDERERGVIPEIV 116

Query:   114 TNRMISRIGFTXXXXXXXXXXXXXXXXXXXXXXKIDVPSWLPVIVSFIFFGAALLGVNYG 173
             TNRMISR+GFT                      K+DVP+W+P IVSF+FFG AL GV+YG
Sbjct:   117 TNRMISRMGFTVGLPLFIGLLFFPFFYYLKVGLKVDVPTWVPFIVSFVFFGTALAGVSYG 176

Query:   174 IVSSSWDPLREGSLLGWNEAQRNWPVFWQSLWSGGGSR 211
             IVSSSWDPLREGSLLGWNEA++NWPVFWQS W+    R
Sbjct:   177 IVSSSWDPLREGSLLGWNEAKKNWPVFWQSFWNSSDKR 214

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=ISS

GO:0009507 "chloroplast" evidence=IDA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0015979 "photosynthesis" evidence=RCA

GO:0016556 "mRNA modification" evidence=RCA

TAIR|locus:2149644 AT5G52780 "AT5G52780" [Arabidopsis thaliana (taxid:3702)]

 Score = 140 (54.3 bits), Expect = 1.1e-09, P = 1.1e-09
 Identities = 29/94 (30%), Positives = 45/94 (47%)

Query:   109 IPEIVTNRMISRIGFTXXXXXXXXXXXXXXXXXXXXXXKIDVPSWLPVIVSFIFFGAALL 168
             IP+ V  RM+ RI  +                        DVP W+P + + + FG++ L
Sbjct:    72 IPQEVFERMMGRIVVSVGTPLGLGVAILKVLEVLKDRNVWDVPLWVPYLTTLVTFGSSAL 131

Query:   169 GVNYGIVSSSWDPLREGSLLGWNEAQRNWPVFWQ 202
             G+ YG +S++ DP +  SL G  EA+ NW   W+
Sbjct:   132 GIAYGSLSTNLDPAKTNSLFGLKEAKENWVEMWK 165


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.317   0.133   0.422    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      213       163   0.00084  107 3  11 22  0.40    32
                                                     30  0.44    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  616 (65 KB)
  Total size of DFA:  171 KB (2098 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  13.07u 0.15s 13.22t   Elapsed:  00:00:00
  Total cpu time:  13.07u 0.15s 13.22t   Elapsed:  00:00:00
  Start:  Fri May 10 03:08:21 2013   End:  Fri May 10 03:08:21 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0010155 "regulation of proton transport" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0046777 "protein autophosphorylation" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O49668	PAM68_ARATH	No assigned EC number	0.5688	0.9718	0.9672	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	AT4G19100	unknown protein; unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- chloroplast, membrane; EXPRESSED IN- 22 plant structures; EXPRESSED DURING- 13 growth stages; BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT5G52780.1); Has 490 Blast hits to 474 proteins in 126 species- Archae - 0; Bacteria - 105; Metazoa - 160; Fungi - 44; Plants - 41; Viruses - 2; Other Eukaryotes - 138 (source- NCBI BLink). (214 aa)
		(Arabidopsis thaliana)
Predicted Functional Partners:
	AT1G64355	unknown protein; unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biolog [...] (199 aa)			•	•					0.706
	AT3G56650	thylakoid lumenal 20 kDa protein; thylakoid lumenal 20 kDa protein; LOCATED IN- thylakoid, thyl [...] (262 aa)				•		•			0.692
	CRR7	CRR7 (CHLORORESPIRATORY REDUCTION 7); Encodes a protein of the chloroplastic NAD(P)H dehydrogen [...] (156 aa)			•	•					0.684
	ATAB2	ATAB2; RNA binding; Encodes a chloroplast-localized protein ATAB2. ATAB2 is involved in the bio [...] (374 aa)			•	•					0.672
	AT2G28605	unknown protein; Encodes a PsbP domain-OEC23 like protein localized in thylakoid (peripheral-lu [...] (232 aa)				•		•			0.663
	PPL1	PPL1 (PsbP-like protein 1); calcium ion binding; PsbP-like protein 1 (PPL1); FUNCTIONS IN- calc [...] (230 aa)				•		•			0.661
	CCB1	CCB1 (COFACTOR ASSEMBLY OF COMPLEX C); COFACTOR ASSEMBLY OF COMPLEX C (CCB1); FUNCTIONS IN- mol [...] (267 aa)			•	•					0.660
	HCF136	HCF136; protein binding; encodes a stability and/or assembly factor of photosystem II ; Essenti [...] (403 aa)				•		•			0.653
	AT4G24750	unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unkn [...] (292 aa)				•					0.647
	AT5G11450	oxygen-evolving complex-related; oxygen-evolving complex-related; FUNCTIONS IN- calcium ion bin [...] (297 aa)				•		•			0.640

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	213
pfam11947	149	pfam11947, DUF3464, Protein of unknown function (D	5e-55

>gnl|CDD|204792 pfam11947, DUF3464, Protein of unknown function (DUF3464)

 Score =  171 bits (436), Expect = 5e-55
 Identities = 52/148 (35%), Positives = 73/148 (49%), Gaps = 4/148 (2%)

Query: 66  ATLNGPRGFGPPPKKTKKAKK----PKTGNDSDDDEDEEGDEAEAGVIPEIVTNRMISRI 121
           A+      F P   + K  K         +     + +    A    IP++V+NRM  R+
Sbjct: 2   ASSRKRLPFEPKRSRKKGVKALRKAAVAKSKDKQKKPKSKRAASESGIPKVVSNRMARRV 61

Query: 122 GFTVGIPLLVGLLFFPFFYYLKVVLKIDVPSWLPVIVSFIFFGAALLGVNYGIVSSSWDP 181
            F  GIP  +G+  F   Y L     IDVP W+ ++VS  FFG  LLG++YGI+S+SWDP
Sbjct: 62  AFFSGIPTALGMAVFVVSYLLVSRGIIDVPPWVTLLVSLGFFGLGLLGLSYGILSASWDP 121

Query: 182 LREGSLLGWNEAQRNWPVFWQSLWSGGG 209
            R GSLLGW E + NW     +  +   
Sbjct: 122 ERPGSLLGWEEFKPNWGRMRAAWKNSRQ 149

This family of proteins are functionally uncharacterized. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length. Length = 149

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	213
PF11947	153	DUF3464: Protein of unknown function (DUF3464); In	100.0
PLN02601	303	beta-carotene hydroxylase	84.18

>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised

Probab=100.00  E-value=1.9e-56  Score=368.68  Aligned_cols=140  Identities=43%  Similarity=0.852  Sum_probs=122.4

Q ss_pred             CCCCCCCCCCccCcCCCCCCCCCCC---------CCCccccccccccCCCcHHHHHHHHhhHHHHhhhhHHhhhhhhhee
Q 028112           69 NGPRGFGPPPKKTKKAKKPKTGNDS---------DDDEDEEGDEAEAGVIPEIVTNRMISRIGFTVGIPLLVGLLFFPFF  139 (213)
Q Consensus        69 ~~~kgF~p~~kk~kk~k~~~~~~~~---------d~dd~~e~~~~~~~aIPevVs~RMlrRia~f~GiP~~lG~~~f~~~  139 (213)
                      .+++||+|.++++|+.|+.++....         .++.+++..+.++.+||++|+|||+|||++|||||+++||++|++|
T Consensus         4 r~~~pfeP~~~~~k~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IP~~Vs~RM~rRm~~~~GiP~~lG~~~f~~~   83 (153)
T PF11947_consen    4 RKRLPFEPSKKRKKNKKKQRKPPQQKAAAKSSASKKKKPQEKRDEDDSAIPEVVSNRMLRRMAVFVGIPTALGVAVFVVF   83 (153)
T ss_pred             CCCCCCCCccchhhhhccccccccchhhhcccccccccccccccccccccCHHHHHHHHHHHHHHhchHHHHHHHHHHHH
Confidence            4789999999887655544333221         1122234456778899999999999999999999999999999999


Q ss_pred             eeeeeccccccCchhHHHHHHHHHHHhhhhhhhccccccCCCCCCCccccHHHhhhhHHHHHHHHhhCC
Q 028112          140 YYLKVVLKIDVPSWLPVIVSFIFFGAALLGVNYGIVSSSWDPLREGSLLGWNEAQRNWPVFWQSLWSGG  208 (213)
Q Consensus       140 Y~L~~~~~~dvP~wv~~lvS~~~FGlglLGISYGiLSASWDp~reGSlLG~eE~k~N~~~~w~s~~~~~  208 (213)
                      |||++++++|||+|+++++|++|||+||||||||||||||||+|+||||||+||++||+|||+++++.+
T Consensus        84 y~l~~~~~~dvP~~~~~~~S~~~Fg~gllGisYGilSaSWD~~r~GSllG~~e~~~N~~r~~~a~~~~~  152 (153)
T PF11947_consen   84 YYLKSRQIVDVPPWAVLLVSLVFFGLGLLGISYGILSASWDPEREGSLLGWEEFKRNWGRMWEAWRSSR  152 (153)
T ss_pred             HHHHhccccccCchHHHHHHHHHHHHHHHhhhhhhcccccCCCCCCCcccHHHHHHhHHHHHHHHHhcc
Confidence            999999999999999999999999999999999999999999999999999999999999999999864

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.

>PLN02601 beta-carotene hydroxylase

Probab=84.18  E-value=2.4  Score=39.59  Aligned_cols=56  Identities=13%  Similarity=0.125  Sum_probs=32.4

Q ss_pred             HHHHHHHHhh-----------HHHHhhhhHHhhhhhhheeeeeeeccccccCchhHHHHHHHHHHHhhhh
Q 028112          111 EIVTNRMISR-----------IGFTVGIPLLVGLLFFPFFYYLKVVLKIDVPSWLPVIVSFIFFGAALLG  169 (213)
Q Consensus       111 evVs~RMlrR-----------ia~f~GiP~~lG~~~f~~~Y~L~~~~~~dvP~wv~~lvS~~~FGlglLG  169 (213)
                      .-|+.|+.||           ++-++||-....++++.=|+|-...  -|+|-- -++..+++|..+++|
T Consensus        80 ~~~~~~~~~k~~er~ty~~aa~~ss~gi~s~a~~a~y~rf~~~~~~--g~~p~~-em~~~~al~lgtfvg  146 (303)
T PLN02601         80 SRLLKKAEKKKSERFTYLIAAVMSSFGITSMAIMAVYYRFSWQMKG--GEVSML-EMFGTFALSVGAAVG  146 (303)
T ss_pred             HHHHHHHHHhhhhhhHHHHHHHHHhhcHHHHHHHHHHHHHhhccCC--CCcCHH-HHHHHHHHHHHHHHH
Confidence            3466777665           4556677666666776666666654  466643 344444444444555

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00