Citrus Sinensis ID: 028169

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210--
MSNHLGTAGSNNSGGPPVALNERILSSMSHRSVAAHPWHDLEIGPGAPAVCNCVVEIGKGGKVKYELDKASGLIKVDRVLYSSVVYPHNYGFIPRTICEDSDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCADDPEFRHYKDIKELPPHRLAEIRRFFEDCIHSFVFIILSYSLIDYLSQHSAVSTTPNMHKLHCISIN
ccccccccccccccccccccHHHHHHHccccccccccccccccccccccEEEEEEEEcccccccEEEEcccccEEEEEEcccccccccccccccccccccccccEEEEEcccccccccEEEEEEEEEEEEEEccccccEEEEEEccccccccccccccccHHHHHHHHHHHHHHHccccEEEEEcccccHHHHHHHHHHHHHHHHHHccccc
cccccccccccccccccccHHHHHHHcccccccccccccccccccccccEEEEEEEEcccccEEEEEEccccEEEEEEEcccccccccEEEEccccccccccccEEEEEcccccccccEEEEEEEEEEEEEEcccEEEEEEEEEcccHHHcccccHHHccHHHHHHHHHHHHHHHHHcccEEEEcccccHHHHHHHHHHHHHHHHHHHHccc
msnhlgtagsnnsggppvaLNERILSsmshrsvaahpwhdleigpgapavcncvveigkggkvKYELDKasglikvdRVLYSSvvyphnygfiprticedsdpmDVLVLMqepvlpgsflrcraiglmpmidqgekddKIIAvcaddpefrhykdikelpphRLAEIRRFFEDCIHSFVFIILSYSLIDYlsqhsavsttpnmhklhcisin
msnhlgtagsnnsggppVALNERILSSMSHRSVAAHPWHDLEIGPGAPAVCNCVVEIGKGGKVKYELDKASGLIKVDRVLYSSVVYPHNYGFIPRTICEDSDPMDVLVLMQEPVLPGSFLRCRAIGLMPmidqgekdDKIIAVCADDPEFrhykdikelppHRLAEIRRFFEDCIHSFVFIILSYSLIDYLSQHSavsttpnmhklhcisin
MSNHLGTAGSNNSGGPPVALNERILSSMSHRSVAAHPWHDLEIGPGAPAVCNCVVEIGKGGKVKYELDKASGLIKVDRVLYSSVVYPHNYGFIPRTICEDSDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCADDPEFRHYKDIKELPPHRLAEIRRFFEDCIHSFVFIILSYSLIDYLSQHSAVSTTPNMHKLHCISIN
********************************VAAHPWHDLEIGPGAPAVCNCVVEIGKGGKVKYELDKASGLIKVDRVLYSSVVYPHNYGFIPRTICEDSDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCADDPEFRHYKDIKELPPHRLAEIRRFFEDCIHSFVFIILSYSLIDYLSQHSAVST******LHC****
***********************ILSSMSHRSVAAHPWHDLEIGPGAPAVCNCVVEIGKGGKVKYELDKASGLIKVDRVLYSSVVYPHNYGFIPRTICEDSDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCADDPEFRHYKDIKELPPHRLAEIRRFFEDCIHSFVFIILSYSLIDYLSQHSAVSTTPNMHKLHCISIN
*************GGPPVALNERILSSMSHRSVAAHPWHDLEIGPGAPAVCNCVVEIGKGGKVKYELDKASGLIKVDRVLYSSVVYPHNYGFIPRTICEDSDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCADDPEFRHYKDIKELPPHRLAEIRRFFEDCIHSFVFIILSYSLIDYLSQHSAVSTTPNMHKLHCISIN
*****************VAL***ILSSMSHRSVAAHPWHDLEIGPGAPAVCNCVVEIGKGGKVKYELDKASGLIKVDRVLYSSVVYPHNYGFIPRTICEDSDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCADDPEFRHYKDIKELPPHRLAEIRRFFEDCIHSFVFIILSYSLIDYLSQHSAVSTTPNMHKLHCISIN
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MSNHLGTAGSNNSGGPPVALNERILSSMSHRSVAAHPWHDLEIGPGAPAVCNCVVEIGKGGKVKYELDKASGLIKVDRVLYSSVVYPHNYGFIPRTICEDSDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCADDPEFRHYKDIKELPPHRLAEIRRFFEDCIHSFVFIILSYSLIDYLSQHSAVSTTPNMHKLHCISIN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query212 2.2.26 [Sep-21-2011]
P21216218 Soluble inorganic pyropho yes no 0.75 0.729 0.880 2e-80
Q0DYB1214 Soluble inorganic pyropho yes no 0.745 0.738 0.873 3e-79
A2X8Q3214 Soluble inorganic pyropho N/A no 0.745 0.738 0.873 3e-79
O48556214 Soluble inorganic pyropho N/A no 0.816 0.808 0.803 6e-79
Q43187211 Soluble inorganic pyropho N/A no 0.726 0.729 0.870 4e-77
O23979215 Soluble inorganic pyropho N/A no 0.773 0.762 0.769 6e-70
Q949J1192 Soluble inorganic pyropho N/A no 0.849 0.937 0.566 6e-56
Q8EZ21178 Inorganic pyrophosphatase yes no 0.655 0.780 0.525 2e-39
Q72MG4178 Inorganic pyrophosphatase yes no 0.655 0.780 0.525 2e-39
Q8U438178 Inorganic pyrophosphatase yes no 0.646 0.769 0.525 1e-36
>sp|P21216|IPYR2_ARATH Soluble inorganic pyrophosphatase 2 OS=Arabidopsis thaliana GN=PPA2 PE=2 SV=2 Back     alignment and function desciption
 Score =  298 bits (763), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 140/159 (88%), Positives = 145/159 (91%)

Query: 15  GPPVALNERILSSMSHRSVAAHPWHDLEIGPGAPAVCNCVVEIGKGGKVKYELDKASGLI 74
            P V LNER  ++ +HRS AAHPWHDLEIGP AP V NCVVEI KGGKVKYELDK SGLI
Sbjct: 19  NPNVTLNERNFAAFTHRSAAAHPWHDLEIGPEAPTVFNCVVEISKGGKVKYELDKNSGLI 78

Query: 75  KVDRVLYSSVVYPHNYGFIPRTICEDSDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQG 134
           KVDRVLYSS+VYPHNYGFIPRTICEDSDPMDVLVLMQEPVL GSFLR RAIGLMPMIDQG
Sbjct: 79  KVDRVLYSSIVYPHNYGFIPRTICEDSDPMDVLVLMQEPVLTGSFLRARAIGLMPMIDQG 138

Query: 135 EKDDKIIAVCADDPEFRHYKDIKELPPHRLAEIRRFFED 173
           EKDDKIIAVCADDPEFRHY+DIKELPPHRLAEIRRFFED
Sbjct: 139 EKDDKIIAVCADDPEFRHYRDIKELPPHRLAEIRRFFED 177

Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 6EC: .EC: 1EC: .EC: 1
>sp|Q0DYB1|IPYR_ORYSJ Soluble inorganic pyrophosphatase OS=Oryza sativa subsp. japonica GN=IPP PE=2 SV=1 Back     alignment and function description
>sp|A2X8Q3|IPYR_ORYSI Soluble inorganic pyrophosphatase OS=Oryza sativa subsp. indica GN=IPP PE=2 SV=1 Back     alignment and function description
>sp|O48556|IPYR_MAIZE Soluble inorganic pyrophosphatase OS=Zea mays GN=IPP PE=2 SV=1 Back     alignment and function description
>sp|Q43187|IPYR_SOLTU Soluble inorganic pyrophosphatase OS=Solanum tuberosum GN=PPA PE=2 SV=1 Back     alignment and function description
>sp|O23979|IPYR_HORVD Soluble inorganic pyrophosphatase OS=Hordeum vulgare var. distichum GN=IPP PE=2 SV=1 Back     alignment and function description
>sp|Q949J1|IPYR2_CHLRE Soluble inorganic pyrophosphatase 2 OS=Chlamydomonas reinhardtii GN=ppa2 PE=1 SV=1 Back     alignment and function description
>sp|Q8EZ21|IPYR_LEPIN Inorganic pyrophosphatase OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar Lai (strain 56601) GN=ppa PE=3 SV=1 Back     alignment and function description
>sp|Q72MG4|IPYR_LEPIC Inorganic pyrophosphatase OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni (strain Fiocruz L1-130) GN=ppa PE=3 SV=1 Back     alignment and function description
>sp|Q8U438|IPYR_PYRFU Inorganic pyrophosphatase OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=ppa PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query212
359476682215 PREDICTED: soluble inorganic pyrophospha 0.816 0.804 0.890 2e-85
449451549239 PREDICTED: soluble inorganic pyrophospha 0.816 0.723 0.878 7e-85
118484220220 unknown [Populus trichocarpa] 0.811 0.781 0.872 1e-83
388515711216 unknown [Lotus japonicus] 0.811 0.796 0.866 2e-83
224094817213 predicted protein [Populus trichocarpa] 0.811 0.807 0.872 2e-83
357483541222 Soluble inorganic pyrophosphatase [Medic 0.839 0.801 0.837 3e-83
255561090212 inorganic pyrophosphatase, putative [Ric 0.806 0.806 0.878 6e-83
118489670212 unknown [Populus trichocarpa x Populus d 0.806 0.806 0.872 3e-82
351727729213 uncharacterized protein LOC100306258 [Gl 0.811 0.807 0.861 5e-82
357483543213 Soluble inorganic pyrophosphatase [Medic 0.811 0.807 0.849 2e-81
>gi|359476682|ref|XP_002264695.2| PREDICTED: soluble inorganic pyrophosphatase-like [Vitis vinifera] gi|297735129|emb|CBI17491.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  320 bits (821), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 155/174 (89%), Positives = 160/174 (91%), Gaps = 1/174 (0%)

Query: 1   MSNHLGTAGSNNSGGPP-VALNERILSSMSHRSVAAHPWHDLEIGPGAPAVCNCVVEIGK 59
           M+NH G   S  SG P  V LNERILSSMS RS+AAHPWHDLEIGPGAP+V NCVVEIGK
Sbjct: 1   MANHDGEISSKTSGFPHHVVLNERILSSMSRRSIAAHPWHDLEIGPGAPSVFNCVVEIGK 60

Query: 60  GGKVKYELDKASGLIKVDRVLYSSVVYPHNYGFIPRTICEDSDPMDVLVLMQEPVLPGSF 119
           G KVKYELDKASGLIKVDRVLYSSVVYPHNYGFIPRTICEDSDPMDVL+LMQEPVLPGSF
Sbjct: 61  GSKVKYELDKASGLIKVDRVLYSSVVYPHNYGFIPRTICEDSDPMDVLILMQEPVLPGSF 120

Query: 120 LRCRAIGLMPMIDQGEKDDKIIAVCADDPEFRHYKDIKELPPHRLAEIRRFFED 173
           LR RAIGLMPMIDQGEKDDKIIAVCADDPEFRHYKDIKE+PPHRLAEIRRFFED
Sbjct: 121 LRARAIGLMPMIDQGEKDDKIIAVCADDPEFRHYKDIKEIPPHRLAEIRRFFED 174

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449451549|ref|XP_004143524.1| PREDICTED: soluble inorganic pyrophosphatase-like [Cucumis sativus] gi|449522764|ref|XP_004168396.1| PREDICTED: soluble inorganic pyrophosphatase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|118484220|gb|ABK93990.1| unknown [Populus trichocarpa] Back     alignment and taxonomy information
>gi|388515711|gb|AFK45917.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|224094817|ref|XP_002310249.1| predicted protein [Populus trichocarpa] gi|222853152|gb|EEE90699.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|357483541|ref|XP_003612057.1| Soluble inorganic pyrophosphatase [Medicago truncatula] gi|355513392|gb|AES95015.1| Soluble inorganic pyrophosphatase [Medicago truncatula] Back     alignment and taxonomy information
>gi|255561090|ref|XP_002521557.1| inorganic pyrophosphatase, putative [Ricinus communis] gi|223539235|gb|EEF40828.1| inorganic pyrophosphatase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|118489670|gb|ABK96636.1| unknown [Populus trichocarpa x Populus deltoides] Back     alignment and taxonomy information
>gi|351727729|ref|NP_001236147.1| uncharacterized protein LOC100306258 [Glycine max] gi|255628027|gb|ACU14358.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|357483543|ref|XP_003612058.1| Soluble inorganic pyrophosphatase [Medicago truncatula] gi|355513393|gb|AES95016.1| Soluble inorganic pyrophosphatase [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query212
TAIR|locus:2062195218 PPa2 "pyrophosphorylase 2" [Ar 0.745 0.724 0.886 5.1e-74
TAIR|locus:2084066216 PPa4 "pyrophosphorylase 4" [Ar 0.726 0.712 0.876 1.7e-73
TAIR|locus:2200965212 PPa1 "pyrophosphorylase 1" [Ar 0.745 0.745 0.835 3.7e-71
TAIR|locus:2041424216 PPa3 "pyrophosphorylase 3" [Ar 0.787 0.773 0.802 8.9e-70
TAIR|locus:2116997216 PPa5 "pyrophosphorylase 5" [Ar 0.745 0.731 0.810 2.4e-69
UNIPROTKB|Q949J1192 ppa2 "Soluble inorganic pyroph 0.679 0.75 0.680 2.4e-53
TIGR_CMR|DET_0367211 DET_0367 "inorganic pyrophosph 0.617 0.620 0.419 1.1e-25
UNIPROTKB|P65746162 ppa "Inorganic pyrophosphatase 0.551 0.722 0.427 1.6e-24
TIGR_CMR|CJE_0741172 CJE_0741 "inorganic pyrophosph 0.617 0.761 0.425 2.6e-24
UNIPROTKB|P0A7A9176 ppa [Escherichia coli K-12 (ta 0.608 0.732 0.409 2.6e-22
TAIR|locus:2062195 PPa2 "pyrophosphorylase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 747 (268.0 bits), Expect = 5.1e-74, P = 5.1e-74
 Identities = 140/158 (88%), Positives = 145/158 (91%)

Query:    16 PPVALNERILSSMSHRSVAAHPWHDLEIGPGAPAVCNCVVEIGKGGKVKYELDKASGLIK 75
             P V LNER  ++ +HRS AAHPWHDLEIGP AP V NCVVEI KGGKVKYELDK SGLIK
Sbjct:    20 PNVTLNERNFAAFTHRSAAAHPWHDLEIGPEAPTVFNCVVEISKGGKVKYELDKNSGLIK 79

Query:    76 VDRVLYSSVVYPHNYGFIPRTICEDSDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGE 135
             VDRVLYSS+VYPHNYGFIPRTICEDSDPMDVLVLMQEPVL GSFLR RAIGLMPMIDQGE
Sbjct:    80 VDRVLYSSIVYPHNYGFIPRTICEDSDPMDVLVLMQEPVLTGSFLRARAIGLMPMIDQGE 139

Query:   136 KDDKIIAVCADDPEFRHYKDIKELPPHRLAEIRRFFED 173
             KDDKIIAVCADDPEFRHY+DIKELPPHRLAEIRRFFED
Sbjct:   140 KDDKIIAVCADDPEFRHYRDIKELPPHRLAEIRRFFED 177
GO:0000287 "magnesium ion binding" evidence=IEA
GO:0004427 "inorganic diphosphatase activity" evidence=IEA;NAS
GO:0005737 "cytoplasm" evidence=ISM;IEA
GO:0006796 "phosphate-containing compound metabolic process" evidence=IEA
GO:0008152 "metabolic process" evidence=ISS
GO:0016020 "membrane" evidence=ISS
GO:0016462 "pyrophosphatase activity" evidence=ISS
TAIR|locus:2084066 PPa4 "pyrophosphorylase 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2200965 PPa1 "pyrophosphorylase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2041424 PPa3 "pyrophosphorylase 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2116997 PPa5 "pyrophosphorylase 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q949J1 ppa2 "Soluble inorganic pyrophosphatase 2" [Chlamydomonas reinhardtii (taxid:3055)] Back     alignment and assigned GO terms
TIGR_CMR|DET_0367 DET_0367 "inorganic pyrophosphatase" [Dehalococcoides ethenogenes 195 (taxid:243164)] Back     alignment and assigned GO terms
UNIPROTKB|P65746 ppa "Inorganic pyrophosphatase" [Mycobacterium tuberculosis (taxid:1773)] Back     alignment and assigned GO terms
TIGR_CMR|CJE_0741 CJE_0741 "inorganic pyrophosphatase" [Campylobacter jejuni RM1221 (taxid:195099)] Back     alignment and assigned GO terms
UNIPROTKB|P0A7A9 ppa [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8EZ21IPYR_LEPIN3, ., 6, ., 1, ., 10.52510.65560.7808yesno
Q72MG4IPYR_LEPIC3, ., 6, ., 1, ., 10.52510.65560.7808yesno
O26363IPYR_METTH3, ., 6, ., 1, ., 10.54070.63670.7670yesno
Q8U438IPYR_PYRFU3, ., 6, ., 1, ., 10.52550.64620.7696yesno
Q43187IPYR_SOLTU3, ., 6, ., 1, ., 10.87010.72640.7298N/Ano
O48556IPYR_MAIZE3, ., 6, ., 1, ., 10.80340.81600.8084N/Ano
P21216IPYR2_ARATH3, ., 6, ., 1, ., 10.88050.750.7293yesno
O59570IPYR_PYRHO3, ., 6, ., 1, ., 10.51090.64620.7696yesno
Q9UY24IPYR_PYRAB3, ., 6, ., 1, ., 10.51090.64620.7696yesno
Q0DYB1IPYR_ORYSJ3, ., 6, ., 1, ., 10.87340.74520.7383yesno
Q949J1IPYR2_CHLRE3, ., 6, ., 1, ., 10.56660.84900.9375N/Ano
O23979IPYR_HORVD3, ., 6, ., 1, ., 10.76960.77350.7627N/Ano
A2X8Q3IPYR_ORYSI3, ., 6, ., 1, ., 10.87340.74520.7383N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.6.1.10.991
3rd Layer3.6.10.976

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00024902001
SubName- Full=Chromosome chr4 scaffold_32, whole genome shotgun sequence; (232 aa)
(Vitis vinifera)
Predicted Functional Partners:
atpA
RecName- Full=ATP synthase subunit alpha; Short=ATPase subunit alpha; EC=3.6.3.14; AltName- Ful [...] (507 aa)
     •• 0.919
atp1
RecName- Full=ATP synthase subunit alpha;; Produces ATP from ADP in the presence of a proton gr [...] (495 aa)
     •• 0.918
GSVIVG00029622001
SubName- Full=Chromosome chr9 scaffold_49, whole genome shotgun sequence; (623 aa)
     •• 0.917
GSVIVG00032341001
SubName- Full=Chromosome chr4 scaffold_6, whole genome shotgun sequence; (629 aa)
     •• 0.916
GSVIVG00036158001
SubName- Full=Chromosome chr3 scaffold_8, whole genome shotgun sequence; (488 aa)
     •• 0.906
GSVIVG00030440001
RecName- Full=ATP synthase subunit beta; EC=3.6.3.14;; Produces ATP from ADP in the presence of [...] (560 aa)
     •• 0.906
GSVIVG00015498001
SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (509 aa)
     •• 0.905
GSVIVG00017772001
RecName- Full=ATP synthase subunit beta; EC=3.6.3.14;; Produces ATP from ADP in the presence of [...] (554 aa)
     •• 0.905
GSVIVG00038692001
SubName- Full=Chromosome chr18 scaffold_96, whole genome shotgun sequence; (110 aa)
     •  0.899
GSVIVG00038691001
SubName- Full=Chromosome chr18 scaffold_96, whole genome shotgun sequence; (134 aa)
     •  0.899

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query212
PLN02373188 PLN02373, PLN02373, soluble inorganic pyrophosphat 1e-120
cd00412155 cd00412, pyrophosphatase, Inorganic pyrophosphatas 1e-74
pfam00719156 pfam00719, Pyrophosphatase, Inorganic pyrophosphat 4e-70
COG0221171 COG0221, Ppa, Inorganic pyrophosphatase [Energy pr 3e-59
PRK01250176 PRK01250, PRK01250, inorganic pyrophosphatase; Pro 4e-48
PRK02230184 PRK02230, PRK02230, inorganic pyrophosphatase; Pro 7e-48
PRK00642205 PRK00642, PRK00642, inorganic pyrophosphatase; Pro 3e-43
PLN02707267 PLN02707, PLN02707, Soluble inorganic pyrophosphat 2e-18
>gnl|CDD|178001 PLN02373, PLN02373, soluble inorganic pyrophosphatase Back     alignment and domain information 
 Score =  338 bits (868), Expect = e-120
 Identities = 133/147 (90%), Positives = 139/147 (94%)

Query: 27  SMSHRSVAAHPWHDLEIGPGAPAVCNCVVEIGKGGKVKYELDKASGLIKVDRVLYSSVVY 86
           SMS RSVAAHPWHDLEIGPGAPA+ NCVVEI KG KVKYELDK +GLIKVDRVLYSSVVY
Sbjct: 1   SMSRRSVAAHPWHDLEIGPGAPAIFNCVVEITKGSKVKYELDKKTGLIKVDRVLYSSVVY 60

Query: 87  PHNYGFIPRTICEDSDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCAD 146
           PHNYGFIPRT+CED+DP+DVLVLMQEPVLPG FLR RAIGLMPMIDQGEKDDKIIAVCAD
Sbjct: 61  PHNYGFIPRTLCEDNDPLDVLVLMQEPVLPGCFLRARAIGLMPMIDQGEKDDKIIAVCAD 120

Query: 147 DPEFRHYKDIKELPPHRLAEIRRFFED 173
           DPE+RHY DIKELPPHRLAEIRRFFED
Sbjct: 121 DPEYRHYTDIKELPPHRLAEIRRFFED 147

Length = 188
>gnl|CDD|238239 cd00412, pyrophosphatase, Inorganic pyrophosphatase Back     alignment and domain information
>gnl|CDD|189686 pfam00719, Pyrophosphatase, Inorganic pyrophosphatase Back     alignment and domain information
>gnl|CDD|223299 COG0221, Ppa, Inorganic pyrophosphatase [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|179262 PRK01250, PRK01250, inorganic pyrophosphatase; Provisional Back     alignment and domain information
>gnl|CDD|179388 PRK02230, PRK02230, inorganic pyrophosphatase; Provisional Back     alignment and domain information
>gnl|CDD|179080 PRK00642, PRK00642, inorganic pyrophosphatase; Provisional Back     alignment and domain information
>gnl|CDD|178309 PLN02707, PLN02707, Soluble inorganic pyrophosphatase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 212
PLN02373188 soluble inorganic pyrophosphatase 100.0
PLN02707267 Soluble inorganic pyrophosphatase 100.0
PRK00642205 inorganic pyrophosphatase; Provisional 100.0
PRK01250176 inorganic pyrophosphatase; Provisional 100.0
KOG1626279 consensus Inorganic pyrophosphatase/Nucleosome rem 100.0
cd00412155 pyrophosphatase Inorganic pyrophosphatase. These e 100.0
PRK02230184 inorganic pyrophosphatase; Provisional 100.0
PF00719156 Pyrophosphatase: Inorganic pyrophosphatase; InterP 100.0
COG0221171 Ppa Inorganic pyrophosphatase [Energy production a 100.0
KOG1626279 consensus Inorganic pyrophosphatase/Nucleosome rem 94.61
>PLN02373 soluble inorganic pyrophosphatase Back     alignment and domain information 
Probab=100.00  E-value=7.5e-66  Score=437.46  Aligned_cols=170  Identities=80%  Similarity=1.301  Sum_probs=159.8

Q ss_pred             ecccCCcccCCCCCCCCCCCCCCeeEEEEeeCCCCCceEEEecCCCCeEEeeeccccccCccccCccccccCCCCCcceE
Q 028169           27 SMSHRSVAAHPWHDLEIGPGAPAVCNCVVEIGKGGKVKYELDKASGLIKVDRVLYSSVVYPHNYGFIPRTICEDSDPMDV  106 (212)
Q Consensus        27 ~~~~~~~~~spwHdIpl~~~~~~~vn~VVEIPrgs~~KyEid~~~g~i~~Dr~l~~~~~yP~NYGfIPqT~~gDgDPLDv  106 (212)
                      +|+++..++|||||||++++.++.+||||||||||++|||+|+++|.|++||++++++.||||||||||||++|||||||
T Consensus         1 ~~~~~~~~~~~whdi~~~~~~~~~v~vVIEIP~gs~~KyE~dk~~g~i~~Dr~l~~~~~yP~nYGfIP~T~~~DgDPLDv   80 (188)
T PLN02373          1 SMSRRSVAAHPWHDLEIGPGAPAIFNCVVEITKGSKVKYELDKKTGLIKVDRVLYSSVVYPHNYGFIPRTLCEDNDPLDV   80 (188)
T ss_pred             CcccccccCCccccCCCCCCCCCEEEEEEEECCCCCeeEEEccCCCCEEEeeecccCCcCCcccccccccccCCCCccEE
Confidence            36778889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEecCcccCCcceEEEEEeeeEEeeeCCCCCcEEEEEecCCCcccCCCCCCCCChhHHHHHHHHHHHhhcccCCcceeeh
Q 028169          107 LVLMQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCADDPEFRHYKDIKELPPHRLAEIRRFFEDCIHSFVFIILSYS  186 (212)
Q Consensus       107 lvl~~~p~~~G~v~~vrvlG~L~miD~gE~D~KIIaV~~~Dp~~~~i~di~Dl~~~~l~~I~~fF~~YK~leg~~v~~~~  186 (212)
                      |||++.|++||++++||+||+|+|+|+||.|||||||+.+||+|++|+|++|||++++++|+|||++||.++||.+..  
T Consensus        81 lvl~~~~~~~G~vi~~R~iG~l~m~D~ge~D~KiIaV~~~dp~~~~i~dl~Dl~~~~l~~I~~fF~~YK~legK~v~v--  158 (188)
T PLN02373         81 LVLMQEPVLPGCFLRARAIGLMPMIDQGEKDDKIIAVCADDPEYRHYTDIKELPPHRLAEIRRFFEDYKKNENKEVAV--  158 (188)
T ss_pred             EEecCCCCCCceEEEEEEEEEEEEeeCCCCCCeEEEEECCCcccccCCChHHCCHHHHHHHHHHHHHhcccCCCeEEe--
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999998764  


Q ss_pred             hhhhccccceeec
Q 028169          187 LIDYLSQHSAVST  199 (212)
Q Consensus       187 ~~d~~~~~~~~~~  199 (212)
                       ..++++..|.+.
T Consensus       159 -~g~~~~~~A~~~  170 (188)
T PLN02373        159 -NDFLPAEAAIEA  170 (188)
T ss_pred             -CCccCHHHHHHH
Confidence             455555555443

>PLN02707 Soluble inorganic pyrophosphatase Back     alignment and domain information
>PRK00642 inorganic pyrophosphatase; Provisional Back     alignment and domain information
>PRK01250 inorganic pyrophosphatase; Provisional Back     alignment and domain information
>KOG1626 consensus Inorganic pyrophosphatase/Nucleosome remodeling factor, subunit NURF38 [Energy production and conversion] Back     alignment and domain information
>cd00412 pyrophosphatase Inorganic pyrophosphatase Back     alignment and domain information
>PRK02230 inorganic pyrophosphatase; Provisional Back     alignment and domain information
>PF00719 Pyrophosphatase: Inorganic pyrophosphatase; InterPro: IPR008162 Inorganic pyrophosphatase (3 Back     alignment and domain information
>COG0221 Ppa Inorganic pyrophosphatase [Energy production and conversion] Back     alignment and domain information
>KOG1626 consensus Inorganic pyrophosphatase/Nucleosome remodeling factor, subunit NURF38 [Energy production and conversion] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query212
1twl_A186 Inorganic Pyrophosphatase From Pyrococcus Furiosus 6e-38
1ude_A195 Crystal Structure Of The Inorganic Pyrophosphatase 1e-36
3q46_A178 Magnesium Activated Inorganic Pyrophosphatase From 5e-36
3i98_A178 X-Ray Crystallographic Structure Of Inorganic Pyrop 2e-35
3r6e_A178 The Structure Of Thermococcus Thioreducens' Inorgan 1e-32
1qez_A173 Sulfolobus Acidocaldarius Inorganic Pyrophosphatase 2e-30
2bqx_A173 Inorganic Pyrophosphatase From The Pathogenic Bacte 2e-26
1ygz_A173 Crystal Structure Of Inorganic Pyrophosphatase From 5e-26
3sw5_A180 Crystal Structure Of Inorganic Pyrophosphatase From 5e-26
2uxs_A169 2.7a Crystal Structure Of Inorganic Pyrophosphatase 7e-26
1sxv_A172 1.3a Crystal Structure Of Rv3628, Mycobacterium Tub 8e-26
1wcf_A171 1.54 A Crystal Structure Of Rv3628, Mycobacterium T 8e-26
4ecp_A167 X-Ray Crystal Structure Of Inorganic Pyrophosphate 4e-25
3fq3_A197 Crystal Structure Of Inorganic Phosphatase From Bru 8e-25
2prd_A174 Crystal Structure Of Inorganic Pyrophosphatase From 2e-24
3d53_A173 2.2 A Crystal Structure Of Inorganic Pyrophosphatas 1e-23
3d63_A196 Crystal Structure Of Inorganic Pyrophosphatase From 8e-23
2eip_A175 Inorganic Pyrophosphatase Length = 175 5e-22
1obw_A175 Structure Of Inorganic Pyrophosphatase Length = 175 1e-21
3ld3_A199 Crystal Structure Of Inorganic Phosphatase From Ana 1e-21
1mjz_A175 Structure Of Inorganic Pyrophosphatase Mutant D97n 2e-21
1mjw_A175 Structure Of Inorganic Pyrophosphatase Mutant D42n 2e-21
1mjx_A175 Structure Of Inorganic Pyrophosphatase Mutant D65n 2e-21
2au7_A175 The R43q Active Site Variant Of E.Coli Inorganic Py 3e-21
1mjy_A175 Structure Of Inorganic Pyrophosphatase Mutant D70n 3e-21
3lo0_A193 Crystal Structure Of Inorganic Pyrophosphatase From 3e-20
3tr4_A178 Structure Of An Inorganic Pyrophosphatase (Ppa) Fro 4e-20
3i4q_A176 Structure Of A Putative Inorganic Pyrophosphatase F 3e-15
1ypp_A286 Acid Anhydride Hydrolase Length = 286 8e-10
8prk_A287 The R78k And D117e Active Site Variants Of Saccharo 1e-09
1wgi_A286 Structure Of Inorganic Pyrophosphatase Length = 286 3e-09
1huk_A281 Refined Structure Of Yeast Inorganic Pyrophosphatas 3e-09
1huj_A281 Refined Structure Of Yeast Inorganic Pyrophosphatas 3e-09
1m38_A287 Structure Of Inorganic Pyrophosphatase Length = 287 3e-09
2ik1_A286 Yeast Inorganic Pyrophosphatase Variant Y93f With M 7e-09
2ik0_A286 Yeast Inorganic Pyrophosphatase Variant E48d With M 7e-09
2ik7_A286 Yeast Inorganic Pyrophosphatase Variant D120n With 8e-09
117e_A286 The R78k And D117e Active Site Variants Of Saccharo 8e-09
2ik6_A286 Yeast Inorganic Pyrophosphatase Variant D120e With 8e-09
2ik9_A286 Yeast Inorganic Pyrophosphatase Variant D152e With 8e-09
2ik2_A286 Yeast Inorganic Pyrophosphatase Variant D115e With 8e-09
1pyp_A285 X-Ray Diffraction Study Of Inorganic Pyrophosphatas 2e-08
>pdb|1TWL|A Chain A, Inorganic Pyrophosphatase From Pyrococcus Furiosus Pfu-264096-001 Length = 186 Back     alignment and structure 
Iteration: 1

 Score =  153 bits (387), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 72/139 (51%), Positives = 97/139 (69%)
Query: 34  AAHPWHDLEIGPGAPAVCNCVVEIGKGGKVKYELDKASGLIKVDRVLYSSVVYPHNYGFI 93
            ++P+HDLE GP  P V   ++EI KG + KYELDK +GL+K+DRVLYS   YP +YG I
Sbjct: 8   GSNPFHDLEPGPDVPEVVYAIIEIPKGSRNKYELDKKTGLLKLDRVLYSPFFYPVDYGII 67
Query: 94  PRTICEDSDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCADDPEFRHY 153
           PRT  ED DP D++V+M+EPV P + +  R IGL  MID G+KD K++AV  +DP F+ +
Sbjct: 68  PRTWYEDDDPFDIMVIMREPVYPLTIIEARPIGLFKMIDSGDKDYKVLAVPVEDPYFKDW 127
Query: 154 KDIKELPPHRLAEIRRFFE 172
           KDI ++P   L EI  FF+
Sbjct: 128 KDIDDVPKAFLDEIAHFFK 146
>pdb|1UDE|A Chain A, Crystal Structure Of The Inorganic Pyrophosphatase From The Hyperthermophilic Archaeon Pyrococcus Horikoshii Ot3 Length = 195 Back     alignment and structure
>pdb|3Q46|A Chain A, Magnesium Activated Inorganic Pyrophosphatase From Thermococcus Thioreducens Bound To Hydrolyzed Product At 0.99 Angstrom Resolution Length = 178 Back     alignment and structure
>pdb|3I98|A Chain A, X-Ray Crystallographic Structure Of Inorganic Pyrophosphatase At 298k From Archaeon Thermococcus Thioreducens Length = 178 Back     alignment and structure
>pdb|3R6E|A Chain A, The Structure Of Thermococcus Thioreducens' Inorganic Pyrophosphatase Bound To Sulfate Length = 178 Back     alignment and structure
>pdb|1QEZ|A Chain A, Sulfolobus Acidocaldarius Inorganic Pyrophosphatase: An Archael Pyrophosphatase. Length = 173 Back     alignment and structure
>pdb|2BQX|A Chain A, Inorganic Pyrophosphatase From The Pathogenic Bacterium Helicobacter Pylori-Kinetic And Structural Properties Length = 173 Back     alignment and structure
>pdb|1YGZ|A Chain A, Crystal Structure Of Inorganic Pyrophosphatase From Helicobacter Pylori Length = 173 Back     alignment and structure
>pdb|3SW5|A Chain A, Crystal Structure Of Inorganic Pyrophosphatase From Bartonella Henselae Length = 180 Back     alignment and structure
>pdb|2UXS|A Chain A, 2.7a Crystal Structure Of Inorganic Pyrophosphatase (rv3628) From Mycobacterium Tuberculosis At Ph 7.5 Length = 169 Back     alignment and structure
>pdb|1SXV|A Chain A, 1.3a Crystal Structure Of Rv3628, Mycobacterium Tuberculosis Inorganic Pyrophosphatase (Ppase) At Ph5.0 Length = 172 Back     alignment and structure
>pdb|1WCF|A Chain A, 1.54 A Crystal Structure Of Rv3628, Mycobacterium Tuberculosis Inorganic Pyrophosphatase (Ppase) At Ph7.0 Length = 171 Back     alignment and structure
>pdb|4ECP|A Chain A, X-Ray Crystal Structure Of Inorganic Pyrophosphate Ppa From Mycobacterium Leprae Length = 167 Back     alignment and structure
>pdb|3FQ3|A Chain A, Crystal Structure Of Inorganic Phosphatase From Brucella Melitensis Length = 197 Back     alignment and structure
>pdb|2PRD|A Chain A, Crystal Structure Of Inorganic Pyrophosphatase From Thermus Thermophilus Length = 174 Back     alignment and structure
>pdb|3D53|A Chain A, 2.2 A Crystal Structure Of Inorganic Pyrophosphatase From Rickettsia Prowazekii Length = 173 Back     alignment and structure
>pdb|3D63|A Chain A, Crystal Structure Of Inorganic Pyrophosphatase From Burkholderia Pseudomallei Length = 196 Back     alignment and structure
>pdb|2EIP|A Chain A, Inorganic Pyrophosphatase Length = 175 Back     alignment and structure
>pdb|1OBW|A Chain A, Structure Of Inorganic Pyrophosphatase Length = 175 Back     alignment and structure
>pdb|3LD3|A Chain A, Crystal Structure Of Inorganic Phosphatase From Anaplasma Phagocytophilum At 1.75a Resolution Length = 199 Back     alignment and structure
>pdb|1MJZ|A Chain A, Structure Of Inorganic Pyrophosphatase Mutant D97n Length = 175 Back     alignment and structure
>pdb|1MJW|A Chain A, Structure Of Inorganic Pyrophosphatase Mutant D42n Length = 175 Back     alignment and structure
>pdb|1MJX|A Chain A, Structure Of Inorganic Pyrophosphatase Mutant D65n Length = 175 Back     alignment and structure
>pdb|2AU7|A Chain A, The R43q Active Site Variant Of E.Coli Inorganic Pyrophosphatase Length = 175 Back     alignment and structure
>pdb|1MJY|A Chain A, Structure Of Inorganic Pyrophosphatase Mutant D70n Length = 175 Back     alignment and structure
>pdb|3LO0|A Chain A, Crystal Structure Of Inorganic Pyrophosphatase From Ehrlichia Chaffeensis Length = 193 Back     alignment and structure
>pdb|3TR4|A Chain A, Structure Of An Inorganic Pyrophosphatase (Ppa) From Coxiella Burnetii Length = 178 Back     alignment and structure
>pdb|3I4Q|A Chain A, Structure Of A Putative Inorganic Pyrophosphatase From The Oil- Degrading Bacterium Oleispira Antarctica Length = 176 Back     alignment and structure
>pdb|1YPP|A Chain A, Acid Anhydride Hydrolase Length = 286 Back     alignment and structure
>pdb|8PRK|A Chain A, The R78k And D117e Active Site Variants Of Saccharomyces Cerevisiae Soluble Inorganic Pyrophosphatase: Structural Studies And Mechanistic Implications Length = 287 Back     alignment and structure
>pdb|1WGI|A Chain A, Structure Of Inorganic Pyrophosphatase Length = 286 Back     alignment and structure
>pdb|1HUK|A Chain A, Refined Structure Of Yeast Inorganic Pyrophosphatase And Its K61r Mutant Length = 281 Back     alignment and structure
>pdb|1HUJ|A Chain A, Refined Structure Of Yeast Inorganic Pyrophosphatase And Its K61r Mutant Length = 281 Back     alignment and structure
>pdb|1M38|A Chain A, Structure Of Inorganic Pyrophosphatase Length = 287 Back     alignment and structure
>pdb|2IK1|A Chain A, Yeast Inorganic Pyrophosphatase Variant Y93f With Magnesium And Phosphate Length = 286 Back     alignment and structure
>pdb|2IK0|A Chain A, Yeast Inorganic Pyrophosphatase Variant E48d With Magnesium And Phosphate Length = 286 Back     alignment and structure
>pdb|2IK7|A Chain A, Yeast Inorganic Pyrophosphatase Variant D120n With Magnesium And Phosphate Length = 286 Back     alignment and structure
>pdb|117E|A Chain A, The R78k And D117e Active Site Variants Of Saccharomyces Cerevisiae Soluble Inorganic Pyrophosphatase: Structural Studies And Mechanistic Implications Length = 286 Back     alignment and structure
>pdb|2IK6|A Chain A, Yeast Inorganic Pyrophosphatase Variant D120e With Magnesium And Phosphate Length = 286 Back     alignment and structure
>pdb|2IK9|A Chain A, Yeast Inorganic Pyrophosphatase Variant D152e With Magnesium And Phosphate Length = 286 Back     alignment and structure
>pdb|2IK2|A Chain A, Yeast Inorganic Pyrophosphatase Variant D115e With Magnesium And Phosphate Length = 286 Back     alignment and structure
>pdb|1PYP|A Chain A, X-Ray Diffraction Study Of Inorganic Pyrophosphatase From Baker,S Yeast At The 3 Angstroms Resolution (Russian) Length = 285 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query212
3q46_A178 TT-ippase; inorganic pyrophosphatase, hydrolase; H 4e-84
2prd_A174 Pyrophosphate phosphohydrolase; 2.00A {Thermus the 2e-82
1qez_A173 Ppase, S-ppase, protein (inorganic pyrophosphatase 3e-80
3gvf_A196 Inorganic pyrophosphatase; structural genomics, hy 7e-80
3ld3_A199 Inorganic pyrophosphatase; structural genomics, se 9e-80
1sxv_A172 Inorganic pyrophosphatase; structural genomics, pp 1e-79
2bqx_A173 Inorganic pyrophosphatase; hydrolase; 1.90A {Helic 5e-78
2au7_A175 Inorganic pyrophosphatase; hydrolase, mutant; 1.05 8e-77
3fq3_A197 Inorganic pyrophosphatase:bacterial/archaeal INOR 3e-76
3tr4_A178 Inorganic pyrophosphatase; central intermediary me 3e-71
3d53_A173 Inorganic pyrophosphatase; seattle structural G ce 5e-71
1e9g_A286 Ppase, inorganic pyrophosphatase; pyrophosphate ph 1e-59
>3q46_A TT-ippase; inorganic pyrophosphatase, hydrolase; HET: EPE; 0.99A {Thermococcus thioreducens} PDB: 3r6e_A* 3q3l_A 3i98_A 3q4w_A 3q9m_A* 3r5u_A 3r5v_A* 3q5v_A* 1ude_A 1twl_A Length = 178 Back     alignment and structure
 Score =  246 bits (630), Expect = 4e-84
 Identities = 69/138 (50%), Positives = 96/138 (69%)

Query: 36  HPWHDLEIGPGAPAVCNCVVEIGKGGKVKYELDKASGLIKVDRVLYSSVVYPHNYGFIPR 95
           +P+H+LE GP  P V   ++EI KG + KYELDKA+GL+K+DRVLYS   YP +YG IP+
Sbjct: 2   NPFHELEPGPEVPEVVYALIEIPKGSRNKYELDKATGLLKLDRVLYSPFFYPVDYGIIPQ 61

Query: 96  TICEDSDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCADDPEFRHYKD 155
           T  +D DP D++V+M+EPV P + +  R IG+M M D G+KD K++AV  +DP F  +KD
Sbjct: 62  TWYDDGDPFDIMVIMREPVYPLTIIEARPIGIMKMEDSGDKDWKVLAVPVEDPYFNDWKD 121

Query: 156 IKELPPHRLAEIRRFFED 173
           I ++P   L EI  FF+ 
Sbjct: 122 ISDVPKAFLDEIAHFFQR 139
>2prd_A Pyrophosphate phosphohydrolase; 2.00A {Thermus thermophilus} SCOP: b.40.5.1 Length = 174 Back     alignment and structure
>1qez_A Ppase, S-ppase, protein (inorganic pyrophosphatase); thermostability, magnesium, hydrolase; 2.70A {Sulfolobus acidocaldarius} SCOP: b.40.5.1 Length = 173 Back     alignment and structure
>3gvf_A Inorganic pyrophosphatase; structural genomics, hydrolase, S structural genomics center for infectious disease, ssgcid; HET: PGE; 1.75A {Burkholderia pseudomallei 1710B} PDB: 3d63_A* 3eiy_A 3ej0_A* 3ej2_A* 3eiz_A* Length = 196 Back     alignment and structure
>3ld3_A Inorganic pyrophosphatase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, hydrolase; 1.75A {Anaplasma phagocytophilum} PDB: 3lo0_A Length = 199 Back     alignment and structure
>1sxv_A Inorganic pyrophosphatase; structural genomics, ppase,, hydrolase; 1.30A {Mycobacterium tuberculosis} PDB: 1wcf_A 2uxs_A 4ecp_A Length = 172 Back     alignment and structure
>2bqx_A Inorganic pyrophosphatase; hydrolase; 1.90A {Helicobacter pylori} PDB: 1ygz_A 2bqy_A Length = 173 Back     alignment and structure
>2au7_A Inorganic pyrophosphatase; hydrolase, mutant; 1.05A {Escherichia coli} PDB: 1i40_A 1i6t_A 1igp_A 1obw_A 2au6_A 2au8_A 2au9_A 2auu_A 1mjy_A 1faj_A 1ino_A 1ipw_A 1jfd_A 2eip_A 1mjz_A 1mjx_A 1mjw_A 3i4q_A* Length = 175 Back     alignment and structure
>3fq3_A Inorganic pyrophosphatase:bacterial/archaeal INOR pyrophosphatase; ssgcid, inorganic phosphatase; 1.90A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} PDB: 3sw5_A Length = 197 Back     alignment and structure
>3tr4_A Inorganic pyrophosphatase; central intermediary metabolism, hydrolase; HET: MSE; 2.00A {Coxiella burnetii} Length = 178 Back     alignment and structure
>3d53_A Inorganic pyrophosphatase; seattle structural G center for infectious disease, ssgcid, hydrolase, magnesium binding; 2.20A {Rickettsia prowazekii} PDB: 3emj_A* Length = 173 Back     alignment and structure
>1e9g_A Ppase, inorganic pyrophosphatase; pyrophosphate phosphohydrolase, hydrolase, manganese; HET: PO4; 1.15A {Saccharomyces cerevisiae} SCOP: b.40.5.1 PDB: 1e6a_A* 1wgi_A 1wgj_A 2ihp_A* 8prk_A 2ik6_A 2ik2_A 2ik4_A 117e_A 2ik1_A* 2ik9_A 2ik0_A 2ik7_A 1m38_A 1ypp_A 1huk_A 1huj_A 1pyp_A Length = 286 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query212
3q46_A178 TT-ippase; inorganic pyrophosphatase, hydrolase; H 100.0
1e9g_A286 Ppase, inorganic pyrophosphatase; pyrophosphate ph 100.0
2prd_A174 Pyrophosphate phosphohydrolase; 2.00A {Thermus the 100.0
3gvf_A196 Inorganic pyrophosphatase; structural genomics, hy 100.0
3fq3_A197 Inorganic pyrophosphatase:bacterial/archaeal INOR 100.0
2au7_A175 Inorganic pyrophosphatase; hydrolase, mutant; 1.05 100.0
3ld3_A199 Inorganic pyrophosphatase; structural genomics, se 100.0
3d53_A173 Inorganic pyrophosphatase; seattle structural G ce 100.0
2bqx_A173 Inorganic pyrophosphatase; hydrolase; 1.90A {Helic 100.0
3tr4_A178 Inorganic pyrophosphatase; central intermediary me 100.0
1qez_A173 Ppase, S-ppase, protein (inorganic pyrophosphatase 100.0
1sxv_A172 Inorganic pyrophosphatase; structural genomics, pp 100.0
>3q46_A TT-ippase; inorganic pyrophosphatase, hydrolase; HET: EPE; 0.99A {Thermococcus thioreducens} SCOP: b.40.5.1 PDB: 3r6e_A* 3q3l_A 3i98_A 3q4w_A 3q9m_A* 3r5u_A 3r5v_A* 3q5v_A* 1ude_A 1twl_A Back     alignment and structure
Probab=100.00  E-value=8.6e-68  Score=444.85  Aligned_cols=161  Identities=43%  Similarity=0.732  Sum_probs=153.7

Q ss_pred             cCCCCCCCCCCCCCCeeEEEEeeCCCCCceEEEecCCCCeEEeeeccccccCccccCccccccCCCCCcceEEEecCccc
Q 028169           35 AHPWHDLEIGPGAPAVCNCVVEIGKGGKVKYELDKASGLIKVDRVLYSSVVYPHNYGFIPRTICEDSDPMDVLVLMQEPV  114 (212)
Q Consensus        35 ~spwHdIpl~~~~~~~vn~VVEIPrgs~~KyEid~~~g~i~~Dr~l~~~~~yP~NYGfIPqT~~gDgDPLDvlvl~~~p~  114 (212)
                      +|||||||++.+.|.+|||||||||||++|||+|+++|.|++||++++++.||+|||||||||++||||||||||+++|+
T Consensus         1 ~spwhdi~~g~~~p~~~nvvIEIP~gs~~KyE~dk~~g~i~~DR~l~~~~~YP~NYGfIP~Tl~~DgDPlDvlvl~~~~~   80 (178)
T 3q46_A            1 MNPFHELEPGPEVPEVVYALIEIPKGSRNKYELDKATGLLKLDRVLYSPFFYPVDYGIIPQTWYDDGDPFDIMVIMREPV   80 (178)
T ss_dssp             CCTTTTSCSCSBTTTBCCCEEEECTTCCEEEEECTTTSCEEEEEECSSSCCCSSEEEECTTCCBTTTBCCEEEECCSSCC
T ss_pred             CCccccCCCCCCCCCEEEEEEEECCCCCeeEEECCCCCCEEEeecccCCCCCCcccccCCCccCCCCCeeEEEEEcCCCC
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcceEEEEEeeeEEeeeCCCCCcEEEEEecCCCcccCCCCCCCCChhHHHHHHHHHHHhhcccCCcceeehhhhhcccc
Q 028169          115 LPGSFLRCRAIGLMPMIDQGEKDDKIIAVCADDPEFRHYKDIKELPPHRLAEIRRFFEDCIHSFVFIILSYSLIDYLSQH  194 (212)
Q Consensus       115 ~~G~v~~vrvlG~L~miD~gE~D~KIIaV~~~Dp~~~~i~di~Dl~~~~l~~I~~fF~~YK~leg~~v~~~~~~d~~~~~  194 (212)
                      .||++++||+||+|+|+|+||+|||||||+.+||+|++++|++|||++++++|+|||++||.||||.++.++|.+-..|.
T Consensus        81 ~pG~vi~~r~iGvl~m~Dege~D~KiiaV~~~Dp~~~~i~di~Dl~~~~l~~i~~fF~~YK~legK~v~~~g~~~~~~A~  160 (178)
T 3q46_A           81 YPLTIIEARPIGIMKMEDSGDKDWKVLAVPVEDPYFNDWKDISDVPKAFLDEIAHFFQRYKELQGKTTKIEGWGNAEEAK  160 (178)
T ss_dssp             CTTCBC-CEEEEEEEEEETTEECCEEEEECTTCGGGTTCCSGGGSCHHHHHHHHHHHHHTTGGGTCCEEEEEEEEHHHHH
T ss_pred             CCceEEEEEEEEEEEeecCCCccceEEEeeCCCccccccCChHHCCHHHHHHHHHHHHHhcCcCCCceEeccccCHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999998876544443


Q ss_pred             c
Q 028169          195 S  195 (212)
Q Consensus       195 ~  195 (212)
                      .
T Consensus       161 ~  161 (178)
T 3q46_A          161 R  161 (178)
T ss_dssp             H
T ss_pred             H
Confidence            3
>1e9g_A Ppase, inorganic pyrophosphatase; pyrophosphate phosphohydrolase, hydrolase, manganese; HET: PO4; 1.15A {Saccharomyces cerevisiae} SCOP: b.40.5.1 PDB: 1e6a_A* 1wgi_A 1wgj_A 2ihp_A* 8prk_A 2ik6_A 2ik2_A 2ik4_A 117e_A 2ik1_A* 2ik9_A 2ik0_A 2ik7_A 1m38_A 1ypp_A 1huk_A 1huj_A 1pyp_A Back     alignment and structure
>2prd_A Pyrophosphate phosphohydrolase; 2.00A {Thermus thermophilus} SCOP: b.40.5.1 Back     alignment and structure
>3gvf_A Inorganic pyrophosphatase; structural genomics, hydrolase, S structural genomics center for infectious disease, ssgcid; HET: PGE; 1.75A {Burkholderia pseudomallei 1710B} PDB: 3d63_A* 3eiy_A 3ej0_A* 3ej2_A* 3eiz_A* Back     alignment and structure
>3fq3_A Inorganic pyrophosphatase:bacterial/archaeal INOR pyrophosphatase; ssgcid, inorganic phosphatase; 1.90A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} PDB: 3sw5_A Back     alignment and structure
>2au7_A Inorganic pyrophosphatase; hydrolase, mutant; 1.05A {Escherichia coli} PDB: 1i40_A 1i6t_A 1igp_A 1obw_A 2au6_A 2au8_A 2au9_A 2auu_A 1mjy_A 1faj_A 1ino_A 1ipw_A 1jfd_A 2eip_A 1mjz_A 1mjx_A 1mjw_A 3i4q_A* Back     alignment and structure
>3ld3_A Inorganic pyrophosphatase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, hydrolase; 1.75A {Anaplasma phagocytophilum} PDB: 3lo0_A Back     alignment and structure
>3d53_A Inorganic pyrophosphatase; seattle structural G center for infectious disease, ssgcid, hydrolase, magnesium binding; 2.20A {Rickettsia prowazekii} PDB: 3emj_A* Back     alignment and structure
>2bqx_A Inorganic pyrophosphatase; hydrolase; 1.90A {Helicobacter pylori} PDB: 1ygz_A 2bqy_A Back     alignment and structure
>3tr4_A Inorganic pyrophosphatase; central intermediary metabolism, hydrolase; HET: MSE; 2.00A {Coxiella burnetii} SCOP: b.40.5.0 Back     alignment and structure
>1qez_A Ppase, S-ppase, protein (inorganic pyrophosphatase); thermostability, magnesium, hydrolase; 2.70A {Sulfolobus acidocaldarius} SCOP: b.40.5.1 Back     alignment and structure
>1sxv_A Inorganic pyrophosphatase; structural genomics, ppase,, hydrolase; 1.30A {Mycobacterium tuberculosis} PDB: 1wcf_A 2uxs_A 4ecp_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 212
d1twla_173 b.40.5.1 (A:) Inorganic pyrophosphatase {Pyrococcu 9e-54
d2prda_174 b.40.5.1 (A:) Inorganic pyrophosphatase {Thermus t 5e-50
d1i40a_175 b.40.5.1 (A:) Inorganic pyrophosphatase {Escherich 5e-47
d1e9ga_284 b.40.5.1 (A:) Inorganic pyrophosphatase {Baker's y 4e-46
d1qeza_170 b.40.5.1 (A:) Inorganic pyrophosphatase {Archaeon 2e-45
>d1twla_ b.40.5.1 (A:) Inorganic pyrophosphatase {Pyrococcus furiosus [TaxId: 2261]} Length = 173 Back     information, alignment and structure

class: All beta proteins
fold: OB-fold
superfamily: Inorganic pyrophosphatase
family: Inorganic pyrophosphatase
domain: Inorganic pyrophosphatase
species: Pyrococcus furiosus [TaxId: 2261]

 Score =  167 bits (425), Expect = 9e-54
 Identities = 72/138 (52%), Positives = 96/138 (69%)

Query: 36  HPWHDLEIGPGAPAVCNCVVEIGKGGKVKYELDKASGLIKVDRVLYSSVVYPHNYGFIPR 95
           +P+HDLE GP  P V   ++EI KG + KYELDK +GL+K+DRVLYS   YP +YG IPR
Sbjct: 1   NPFHDLEPGPDVPEVVYAIIEIPKGSRNKYELDKKTGLLKLDRVLYSPFFYPVDYGIIPR 60

Query: 96  TICEDSDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCADDPEFRHYKD 155
           T  ED DP D++V+M+EPV P + +  R IGL  MID G+KD K++AV  +DP F+ +KD
Sbjct: 61  TWYEDDDPFDIMVIMREPVYPLTIIEARPIGLFKMIDSGDKDYKVLAVPVEDPYFKDWKD 120

Query: 156 IKELPPHRLAEIRRFFED 173
           I ++P   L EI  FF+ 
Sbjct: 121 IDDVPKAFLDEIAHFFKR 138
>d2prda_ b.40.5.1 (A:) Inorganic pyrophosphatase {Thermus thermophilus [TaxId: 274]} Length = 174 Back     information, alignment and structure
>d1i40a_ b.40.5.1 (A:) Inorganic pyrophosphatase {Escherichia coli [TaxId: 562]} Length = 175 Back     information, alignment and structure
>d1e9ga_ b.40.5.1 (A:) Inorganic pyrophosphatase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 284 Back     information, alignment and structure
>d1qeza_ b.40.5.1 (A:) Inorganic pyrophosphatase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} Length = 170 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query212
d1e9ga_284 Inorganic pyrophosphatase {Baker's yeast (Saccharo 100.0
d1twla_173 Inorganic pyrophosphatase {Pyrococcus furiosus [Ta 100.0
d2prda_174 Inorganic pyrophosphatase {Thermus thermophilus [T 100.0
d1i40a_175 Inorganic pyrophosphatase {Escherichia coli [TaxId 100.0
d1qeza_170 Inorganic pyrophosphatase {Archaeon Sulfolobus aci 100.0
>d1e9ga_ b.40.5.1 (A:) Inorganic pyrophosphatase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: All beta proteins
fold: OB-fold
superfamily: Inorganic pyrophosphatase
family: Inorganic pyrophosphatase
domain: Inorganic pyrophosphatase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=9.3e-68  Score=468.78  Aligned_cols=189  Identities=24%  Similarity=0.372  Sum_probs=175.6

Q ss_pred             ccccCCCCCCcceeeeeecccCCcccCCCCCCCCCCC-CCCeeEEEEeeCCCCCceEEEecC-----------CCCeEEe
Q 028169           10 SNNSGGPPVALNERILSSMSHRSVAAHPWHDLEIGPG-APAVCNCVVEIGKGGKVKYELDKA-----------SGLIKVD   77 (212)
Q Consensus        10 ~~~~~g~~~~~~~r~~~~~~~~~~~~spwHdIpl~~~-~~~~vn~VVEIPrgs~~KyEid~~-----------~g~i~~D   77 (212)
                      +..++|+++|++||+|+  ...|+.+|||||||++++ .+++|||||||||||++|||++++           +|.+++|
T Consensus         3 ~~~~~G~~~t~~yr~~~--~~~g~~iSp~HDIPl~~d~~~~~~nvVVEIPrgsn~KyEi~ke~~~npIkqD~k~G~lr~~   80 (284)
T d1e9ga_           3 TTRQIGAKNTLEYKVYI--EKDGKPVSAFHDIPLYADKENNIFNMVVEIPRWTNAKLEITKEETLNPIIQDTKKGKLRFV   80 (284)
T ss_dssp             EEEEEEETTSTTCEEEE--EETTEEECTTTTSCSEEETTTTEEEEEEEECTTCCBCEEECTTSTTCCEEECEETTEECBC
T ss_pred             eeeEccCCCCcceeEEE--ccCCcccCccccCCCCCCCCCCEEEEEEEeCCCCCeeEEECcCCCCCceeeeccCCCEEEE
Confidence            34567999999999995  568999999999999975 468999999999999999999987           5778888


Q ss_pred             eeccccccCccccCccccccC------------CCCCcceEEEecCcccCCcceEEEEEeeeEEeeeCCCCCcEEEEEec
Q 028169           78 RVLYSSVVYPHNYGFIPRTIC------------EDSDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCA  145 (212)
Q Consensus        78 r~l~~~~~yP~NYGfIPqT~~------------gDgDPLDvlvl~~~p~~~G~v~~vrvlG~L~miD~gE~D~KIIaV~~  145 (212)
                      |++++++.||||||||||||+            |||||||||+|++.++.+|++++|||||+|+|+|+||+|||||||++
T Consensus        81 r~l~~~~~YP~NYGfIPqTwedp~~~~~~~~~~GDgDPLDVlvi~~~~~~~G~Vv~vk~lGvL~miDeGE~D~KIIaV~~  160 (284)
T d1e9ga_          81 RNCFPHHGYIHNYGAFPQTWEDPNVSHPETKAVGDNDPIDVLEIGETIAYTGQVKQVKALGIMALLDEGETDWKVIAIDI  160 (284)
T ss_dssp             CEETTCCSCSSEEEECSSCCCCTTSEETTTTEEBCSSCCEEEECCSSCCCTTCEEEEEEEEEECEEETTEECCEEEEEET
T ss_pred             eccCCCCCCCcccccCcccccCcccccccccccCCCCCeeEEEecccccccceEEEEEEEEEEEeccCCCccceEEEeec
Confidence            999999999999999999994            69999999999999999999999999999999999999999999999


Q ss_pred             CCCcccCCCCCCCCC---hhHHHHHHHHHHHhhcccCCcceeehhh-hhccccceeecc
Q 028169          146 DDPEFRHYKDIKELP---PHRLAEIRRFFEDCIHSFVFIILSYSLI-DYLSQHSAVSTT  200 (212)
Q Consensus       146 ~Dp~~~~i~di~Dl~---~~~l~~I~~fF~~YK~leg~~v~~~~~~-d~~~~~~~~~~~  200 (212)
                      +||++++++||+||+   |+++++|++||++||.++||++|+|+++ +++++..|+.+-
T Consensus       161 ~Dp~~~~~ndI~Dv~~~~p~~l~~i~~fF~~YK~~eGK~~n~~~~~g~~~~k~~A~~iI  219 (284)
T d1e9ga_         161 NDPLAPKLNDIEDVEKYFPGLLRATNEWFRIYKIPDGKPENQFAFSGEAKNKKYALDII  219 (284)
T ss_dssp             TSTTGGGCCSHHHHHHHSTTHHHHHHHHHHHTTGGGTCCCCEEGGGGCCBCHHHHHHHH
T ss_pred             CCccccccCChhhhhhhCHHHHHHHHHHHHHhcCCCCCceeEeeccCcccCHHHHHHHH
Confidence            999999999999996   6899999999999999999999999988 799999987654
>d1twla_ b.40.5.1 (A:) Inorganic pyrophosphatase {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d2prda_ b.40.5.1 (A:) Inorganic pyrophosphatase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1i40a_ b.40.5.1 (A:) Inorganic pyrophosphatase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1qeza_ b.40.5.1 (A:) Inorganic pyrophosphatase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} Back     information, alignment and structure