Citrus Sinensis ID: 028201

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210--
Protein Sequence
MNIFSKKPNPKEALRESKREMQHATRGMEKEIGALQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLRQQIANLQGSRAQIRGIATHTQAMHAHSSVAVGMKGASKAMAAMNKQMEPAKQAKVMREFQKQSAQMDMTTEMMSDTIDDALDNDEAEEETEELTNQVLDEIGVDVASQLSAAPKGKIASKNTEDASSSGIDELEKRLAALRNP
Secondary Structure (PSIPRED)
cccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccHHHHHcccccccccccccccccccccHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccHHHHHccccccccccccccccccccHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
mnifskkpnpkEALRESKREMQHATRGMEKEIGALQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLRQQIANLQGSRAQIRGIATHTQAMHAHSSVAVGMKGASKAMAAMNKQMEPAKQAKVMREFQKQSAQMDMTTEMMSDTIDdaldndeaeEETEELTNQVLDEIGVDvasqlsaapkgkiaskntedasssGIDELEKRLAALRNP
Flexible Loop (DISEMBL)
mnifskkpnpkealreSKREMQHATRGMEKEIGALQQEEKKLVAEIKrtaktgnegatKILARQLIRLRQQIANLQGSRAQIRGIATHTQAMHAHSSVAVGMKGASKAMAAMNKQMEPAKQAKVMREFQKQSAQMDMTTEMMSDTIDDALDNDEAEEETEELTNQVLDEIGVDVASQlsaapkgkiaskntedasssgidelekrlaalrnp
Low Complexity Region (SEG)
MNIFSKKPNPKEALRESKREMQHATRGMEKEIGALQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLRQQIANLQGSRAQIRGIATHTQAMHAHSSVavgmkgaskamaamnkQMEPAKQAKVMREFQKQSAQMDMTTEMMSDTIddaldndeaeeeteeltnQVLDEIGVDVASQLSAAPKGKIASKNTEDASSSGIDELEKRLAALRNP
Disordered region (IsUnstruct)
********************************************************ATKILARQLIRLRQQIANLQGSRAQIRGIAT*****************************************************************************************************************************
Disordered Region (DISOPRED)
*N*F**KPNPKE**RE*********************************************ARQLIRLRQQIANLQGSRAQIRGIATHTQAMHA********KGASKAMAAM**************************************DNDEAEEETEELTNQVLDEIGV*********************************LAALR**
Disordered Region (DISEMBL)
***************************MEKEIGALQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLRQQIANLQGSRAQIRGIATHTQAMHAHSSVAVGMKGASKAMAAMNKQMEPAKQAKVMREFQKQSAQMDMTTEMMSDTIDDALDN**********TNQVLDEIGVDVASQLSA******************IDELEKRLAALRNP
Disordered Region (DISPRO)
*****KKPNPKEALRESKREMQHATRGMEKEIGALQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLRQQIANLQGSRAQIRGIATHTQAMHAHSSVAVGMKGASKAMAAMNKQMEPAKQAKVMREFQKQSAQMDMTTEMMSDTIDDALDNDEAEEETEELTNQVLDEIGVDVASQLS***********************E*RLAALR**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNIFSKKPNPKEALRESxxxxxxxxxxxxxxxxxxxxxEKKLVAEIKRTAKTGNEGATKILARQLIRLRQQIANLQGSRAQIRGIATHTQAMHAHSSVAVGMKGASKAMAAMNKQMEPAKQAKVMREFQKQSAQMDMTTEMMSDTIDDALDNDEAEEETEELTNQVLDEIGVDVASQLSAAPKGKIASKNTEDASSSGIDELEKRLAALRNP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	212	2.2.26 [Sep-21-2011]
Q941D5	210	Vacuolar protein sorting-	yes	no	0.990	1.0	0.857	1e-102
Q0WTY4	222	Vacuolar protein sorting-	no	no	0.990	0.945	0.709	2e-85
Q54DB1	198	Charged multivesicular bo	yes	no	0.858	0.919	0.423	2e-38
Q66IV6	214	Charged multivesicular bo	N/A	no	0.976	0.967	0.376	5e-36
Q9SKI2	225	Vacuolar protein sorting-	no	no	0.985	0.928	0.440	1e-35
Q6NVL7	214	Charged multivesicular bo	yes	no	0.976	0.967	0.366	4e-35
Q5F3A2	214	Charged multivesicular bo	yes	no	0.962	0.953	0.368	4e-35
Q5RAV2	213	Charged multivesicular bo	yes	no	0.957	0.953	0.368	8e-34
Q9UQN3	213	Charged multivesicular bo	yes	no	0.957	0.953	0.368	8e-34
Q6NXD2	214	Charged multivesicular bo	yes	no	0.985	0.976	0.350	9e-34

>sp|Q941D5|VPS2C_ARATH Vacuolar protein sorting-associated protein 2 homolog 3 OS=Arabidopsis thaliana GN=VPS2.3 PE=2 SV=1

 Score =  371 bits (952), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 180/210 (85%), Positives = 197/210 (93%)

Query: 1   MNIFSKKPNPKEALRESKREMQHATRGMEKEIGALQQEEKKLVAEIKRTAKTGNEGATKI 60
           MNIF+KKPNP+E LRESKREM  ATRG+EKEIG+LQ EEKKLV EIKRTAK+GNEGATKI
Sbjct: 1   MNIFTKKPNPREVLRESKREMTQATRGIEKEIGSLQSEEKKLVLEIKRTAKSGNEGATKI 60

Query: 61  LARQLIRLRQQIANLQGSRAQIRGIATHTQAMHAHSSVAVGMKGASKAMAAMNKQMEPAK 120
           LARQLIRLRQQIANLQGSRAQ+RGIATHTQAMHAH+SVA GM+GA+KAMAAM+K M+PAK
Sbjct: 61  LARQLIRLRQQIANLQGSRAQMRGIATHTQAMHAHTSVAAGMQGATKAMAAMSKNMDPAK 120

Query: 121 QAKVMREFQKQSAQMDMTTEMMSDTIDDALDNDEAEEETEELTNQVLDEIGVDVASQLSA 180
           QAKVMREFQKQSAQMDMTTEMMSD+IDDALDNDEAE+ETE+LTNQVLDEIG+D+ASQLS+
Sbjct: 121 QAKVMREFQKQSAQMDMTTEMMSDSIDDALDNDEAEDETEDLTNQVLDEIGIDIASQLSS 180

Query: 181 APKGKIASKNTEDASSSGIDELEKRLAALR 210
           APKGKI  K  ED  SSGIDELEKRLAALR
Sbjct: 181 APKGKIGGKKAEDVGSSGIDELEKRLAALR 210

Component of the ESCRT-III complex, which is required for multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. The ESCRT-III complex is probably involved in the concentration of MVB cargo.
Arabidopsis thaliana (taxid: 3702)

>sp|Q0WTY4|VPS2B_ARATH Vacuolar protein sorting-associated protein 2 homolog 2 OS=Arabidopsis thaliana GN=VPS2.2 PE=1 SV=2

 Score =  315 bits (807), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 156/220 (70%), Positives = 185/220 (84%), Gaps = 10/220 (4%)

Query: 1   MNIFSKKPNPKEALRESKREMQHATRGMEKEIGALQQEEKKLVAEIKRTAKTGNEGATKI 60
           MNIF KK  PK+ALR SKREM  ATRG+E+EI +LQ EEK+LVAEIK+TAKTGNE ATKI
Sbjct: 1   MNIFKKKTTPKDALRTSKREMAVATRGIEREITSLQLEEKRLVAEIKKTAKTGNEAATKI 60

Query: 61  LARQLIRLRQQIANLQGSRAQIRGIATHTQAMHAHSSVAVGMKGASKAMAAMNKQMEPAK 120
           LARQL+RLRQQI NLQGSRAQIRG+ THTQA++A +S++ GMKGA+KAM AMNKQM P K
Sbjct: 61  LARQLVRLRQQITNLQGSRAQIRGVTTHTQALYASTSISSGMKGATKAMVAMNKQMAPTK 120

Query: 121 QAKVMREFQKQSAQMDMTTEMMSDTIDDALDNDEAEEETEELTNQVLDEIGVDVASQLSA 180
           QAKV+++FQKQSAQ+DMT EMMS+ ID+ LD DEAEEETE+LTNQVLDEIGV VASQLS+
Sbjct: 121 QAKVIKDFQKQSAQLDMTIEMMSEAIDETLDKDEAEEETEDLTNQVLDEIGVGVASQLSS 180

Query: 181 APKGKIASK----------NTEDASSSGIDELEKRLAALR 210
           APKG+IA+K            +++ SS +DELEKRLA+LR
Sbjct: 181 APKGRIATKTAAPPASTAATNKNSESSEVDELEKRLASLR 220

Component of the ESCRT-III complex, which is required for multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. The ESCRT-III complex is probably involved in the concentration of MVB cargo.

Arabidopsis thaliana (taxid: 3702)

>sp|Q54DB1|CM2A2_DICDI Charged multivesicular body protein 2a homolog 2 OS=Dictyostelium discoideum GN=chmp2a2 PE=3 SV=1

 Score =  159 bits (401), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 77/182 (42%), Positives = 121/182 (66%)

Query: 1   MNIFSKKPNPKEALRESKREMQHATRGMEKEIGALQQEEKKLVAEIKRTAKTGNEGATKI 60
           M +F K+  PKE LRE++R +  + R +++E  ALQ +EKK++ +IK+ AK G   + KI
Sbjct: 1   MFLFGKQKTPKEVLRENQRNLNKSMREIDRERVALQNQEKKIILDIKKMAKQGQMNSAKI 60

Query: 61  LARQLIRLRQQIANLQGSRAQIRGIATHTQAMHAHSSVAVGMKGASKAMAAMNKQMEPAK 120
           +A+ L+R R  I      + Q++ ++   Q + +  ++A  MKG +KAM  MN+QM   +
Sbjct: 61  MAKDLVRTRYHIQKFYEMKTQLQAVSLRIQTLQSTQAMAEAMKGVTKAMITMNRQMNLPQ 120

Query: 121 QAKVMREFQKQSAQMDMTTEMMSDTIDDALDNDEAEEETEELTNQVLDEIGVDVASQLSA 180
             K+M EF++QS +MDM  EMM+DT+D  ++ D  EE+++E+ NQVLDEIG+D+ASQL  
Sbjct: 121 FTKIMMEFEQQSDKMDMKEEMMNDTMDQVMEQDGEEEQSQEILNQVLDEIGIDLASQLVD 180

Query: 181 AP 182
           AP
Sbjct: 181 AP 182

Probable core component of the endosomal sorting required for transport complex III (ESCRT-III) which is involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. MVBs contain intraluminal vesicles (ILVs) that are generated by invagination and scission from the limiting membrane of the endosome and are delivered to lysosomes enabling degradation of membrane proteins.

Dictyostelium discoideum (taxid: 44689)

>sp|Q66IV6|CH2BB_XENLA Charged multivesicular body protein 2b-B OS=Xenopus laevis GN=chmp2b-b PE=2 SV=1

 Score =  150 bits (380), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 79/210 (37%), Positives = 138/210 (65%), Gaps = 3/210 (1%)

Query: 2   NIFSKKPNPKEALRESKREMQHATRGMEKEIGALQQEEKKLVAEIKRTAKTGNEGATKIL 61
           ++F KK    + +RE  +E++   R + ++  AL+++EK+L  EIK+ AKTGN+ A ++L
Sbjct: 3   SLF-KKKTVDDIIREQNKELRGTQRAITRDRAALEKQEKQLEMEIKKMAKTGNKDACRVL 61

Query: 62  ARQLIRLRQQIANLQGSRAQIRGIATHTQAMHAHSSVAVGMKGASKAMAAMNKQMEPAKQ 121
           A+QL++LR+Q        +++  ++T T+ M +   +A  M   +K M A+NK+M+P K 
Sbjct: 62  AKQLVQLRKQKTRTYAVSSKVTSMSTQTKVMSSQMKMAGAMSTTAKTMQAVNKKMDPQKT 121

Query: 122 AKVMREFQKQSAQMDMTTEMMSDTIDDALDNDEAEEETEELTNQVLDEIGVDVASQLSAA 181
            + M+ FQK++ +M+MT EM++DT+DD  D  E EEE++++ NQVLDEIG++++ +++ A
Sbjct: 122 LQTMQNFQKENMKMEMTDEMINDTLDDIFDASEDEEESQDIVNQVLDEIGIEISGKMAKA 181

Query: 182 PKGKIASKNTEDASSSGI--DELEKRLAAL 209
           P       +T  A S GI  +E+E++L AL
Sbjct: 182 PSAAKGLPSTSAAKSKGISDEEIERQLKAL 211

Probable core component of the endosomal sorting required for transport complex III (ESCRT-III) which is involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. MVBs contain intraluminal vesicles (ILVs) that are generated by invagination and scission from the limiting membrane of the endosome and mostly are delivered to lysosomes enabling degradation of membrane proteins, such as stimulated growth factor receptors, lysosomal enzymes and lipids.

Xenopus laevis (taxid: 8355)

>sp|Q9SKI2|VPS2A_ARATH Vacuolar protein sorting-associated protein 2 homolog 1 OS=Arabidopsis thaliana GN=VPS2.1 PE=1 SV=2

 Score =  149 bits (376), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 97/220 (44%), Positives = 141/220 (64%), Gaps = 11/220 (5%)

Query: 2   NIFSKKPNPKEALRESKREMQHATRGMEKEIGALQQEEKKLVAEIKRTAKTGNEGATKIL 61
           +IF K+  P E LRE+KR +  + R +E+E   LQ +EKKL+ EIK+TAK G  GA K++
Sbjct: 4   SIFGKRKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLINEIKKTAKQGQMGAVKVM 63

Query: 62  ARQLIRLRQQIANLQGSRAQIRGIATHTQAMHAHSSVAVGMKGASKAMAAMNKQMEPAKQ 121
           A+ LIR R QI      ++Q++G++   Q + +  ++   MKG +KAM  MN+QM     
Sbjct: 64  AKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSL 123

Query: 122 AKVMREFQKQSAQMDMTTEMMSDTIDDALDNDEAEEETEELTNQVLDEIGVDVASQLSAA 181
            K+M+EF++Q+ +M+M +E+M D IDDAL+ DE EEETE+L +QVLDEIG+D+  +L  A
Sbjct: 124 QKIMQEFERQNEKMEMVSEVMGDAIDDALEGDEEEEETEDLVSQVLDEIGIDINQELVNA 183

Query: 182 PKGKI---ASKN-------TEDASSSGID-ELEKRLAALR 210
           P G +   A+KN       T    S GID +L+ RL  LR
Sbjct: 184 PSGAVAVPAAKNKVVQAEATGAEDSGGIDSDLQARLDNLR 223

Component of the ESCRT-III complex, which is required for multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. The ESCRT-III complex is probably involved in the concentration of MVB cargo.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6NVL7|CHM2B_XENTR Charged multivesicular body protein 2b OS=Xenopus tropicalis GN=chmp2b PE=2 SV=1

 Score =  147 bits (372), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 77/210 (36%), Positives = 138/210 (65%), Gaps = 3/210 (1%)

Query: 2   NIFSKKPNPKEALRESKREMQHATRGMEKEIGALQQEEKKLVAEIKRTAKTGNEGATKIL 61
           ++F KK    + +RE  +E++   R + ++  AL+++EK+L  EIK+ AK GN+ A ++L
Sbjct: 3   SLF-KKKTVDDIIREQNKELRGTQRAITRDRAALEKQEKQLEMEIKKMAKAGNKDACRVL 61

Query: 62  ARQLIRLRQQIANLQGSRAQIRGIATHTQAMHAHSSVAVGMKGASKAMAAMNKQMEPAKQ 121
           A+QL++LR+Q        +++  ++T T+ M +   +A  M   +K M A+NK+M+P K 
Sbjct: 62  AKQLVQLRKQKTRTYAVSSKVTSMSTQTKVMSSQMKMAGAMSTTAKTMQAVNKKMDPQKT 121

Query: 122 AKVMREFQKQSAQMDMTTEMMSDTIDDALDNDEAEEETEELTNQVLDEIGVDVASQLSAA 181
            + M+ FQK++ +M+MT EM++DT+DD  D  + EEE++++ NQVLDEIG++++ +++ A
Sbjct: 122 LQTMQNFQKENMKMEMTEEMINDTLDDIFDASDDEEESQDIVNQVLDEIGIEISGKMAKA 181

Query: 182 PKGKIASKNTEDASSSGI--DELEKRLAAL 209
           P       +T  + SSGI  +E+E++L AL
Sbjct: 182 PSAAKGLPSTSASKSSGISDEEIERQLKAL 211

Probable core component of the endosomal sorting required for transport complex III (ESCRT-III) which is involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. MVBs contain intraluminal vesicles (ILVs) that are generated by invagination and scission from the limiting membrane of the endosome and mostly are delivered to lysosomes enabling degradation of membrane proteins, such as stimulated growth factor receptors, lysosomal enzymes and lipids.

Xenopus tropicalis (taxid: 8364)

>sp|Q5F3A2|CHM2B_CHICK Charged multivesicular body protein 2b OS=Gallus gallus GN=CHMP2B PE=2 SV=1

 Score =  147 bits (372), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 76/206 (36%), Positives = 137/206 (66%), Gaps = 2/206 (0%)

Query: 6   KKPNPKEALRESKREMQHATRGMEKEIGALQQEEKKLVAEIKRTAKTGNEGATKILARQL 65
           KK    + ++E  RE++   R + ++  AL+++E++L  EIK+ AKTGN+ A K+LA+QL
Sbjct: 6   KKKTVDDIIKEQNRELRGTQRTITRDRAALEKQERQLELEIKKMAKTGNKEACKVLAKQL 65

Query: 66  IRLRQQIANLQGSRAQIRGIATHTQAMHAHSSVAVGMKGASKAMAAMNKQMEPAKQAKVM 125
           ++LR+Q        +++  ++T T+ M++   +A  M   +K M A+NK+M+P K  + M
Sbjct: 66  VQLRKQKNRTYAVSSKVTSMSTQTKVMNSQMKMAGAMSTTAKTMQAVNKKMDPQKTLQTM 125

Query: 126 REFQKQSAQMDMTTEMMSDTIDDALDNDEAEEETEELTNQVLDEIGVDVASQLSAAPKGK 185
           + FQK++ +M+MT EM++DT+DD  D  + EEE++++ NQVLDEIG++++ +++ AP   
Sbjct: 126 QNFQKENMKMEMTEEMINDTLDDIFDASDEEEESQDIVNQVLDEIGIEISGKMAKAPSAA 185

Query: 186 --IASKNTEDASSSGIDELEKRLAAL 209
             + S +T  AS+   +E+E++L AL
Sbjct: 186 RGLPSASTSKASTISDEEIERQLKAL 211

Probable core component of the endosomal sorting required for transport complex III (ESCRT-III) which is involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. MVBs contain intraluminal vesicles (ILVs) that are generated by invagination and scission from the limiting membrane of the endosome and mostly are delivered to lysosomes enabling degradation of membrane proteins, such as stimulated growth factor receptors, lysosomal enzymes and lipids.

Gallus gallus (taxid: 9031)

>sp|Q5RAV2|CHM2B_PONAB Charged multivesicular body protein 2b OS=Pongo abelii GN=CHMP2B PE=2 SV=1

 Score =  143 bits (361), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 76/206 (36%), Positives = 135/206 (65%), Gaps = 3/206 (1%)

Query: 6   KKPNPKEALRESKREMQHATRGMEKEIGALQQEEKKLVAEIKRTAKTGNEGATKILARQL 65
           KK    + ++E  RE++   R + ++  AL+++EK+L  EIK+ AK GN+ A K+LA+QL
Sbjct: 6   KKKTVDDVIKEQNRELRGTQRAIIRDRAALEKQEKQLELEIKKMAKIGNKEACKVLAKQL 65

Query: 66  IRLRQQIANLQGSRAQIRGIATHTQAMHAHSSVAVGMKGASKAMAAMNKQMEPAKQAKVM 125
           + LR+Q        +++  ++T T+ M++   +A  M   +K M A+NK+M+P K  + M
Sbjct: 66  VHLRKQKTRTFAVSSKVTSMSTQTKVMNSQMKMAGAMSTTAKTMQAVNKKMDPQKTLQTM 125

Query: 126 REFQKQSAQMDMTTEMMSDTIDDALDNDEAEEETEELTNQVLDEIGVDVASQLSAAPKG- 184
           + FQK++ +M+MT EM++DT+DD  D  + EEE++++ NQVLDEIG++++ +++ AP   
Sbjct: 126 QNFQKENMKMEMTEEMINDTLDDIFDGSDDEEESQDIVNQVLDEIGIEISGKMAKAPSAA 185

Query: 185 -KIASKNTEDASSSGIDELEKRLAAL 209
             + S +T  A+ S  +E+E++L AL
Sbjct: 186 RSLPSASTSKATISD-EEIERQLKAL 210

Probable core component of the endosomal sorting required for transport complex III (ESCRT-III) which is involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. MVBs contain intraluminal vesicles (ILVs) that are generated by invagination and scission from the limiting membrane of the endosome and mostly are delivered to lysosomes enabling degradation of membrane proteins, such as stimulated growth factor receptors, lysosomal enzymes and lipids. The MVB pathway appears to require the sequential function of ESCRT-O, -I,-II and -III complexes. ESCRT-III proteins mostly dissociate from the invaginating membrane before the ILV is released. The ESCRT machinery also functions in topologically equivalent membrane fission events, such as the terminal stages of cytokinesis and the budding of enveloped viruses (lentiviruses). ESCRT-III proteins are believed to mediate the necessary vesicle extrusion and/or membrane fission activities, possibly in conjunction with the AAA ATPase VPS4.

Pongo abelii (taxid: 9601)

>sp|Q9UQN3|CHM2B_HUMAN Charged multivesicular body protein 2b OS=Homo sapiens GN=CHMP2B PE=1 SV=1

 Score =  143 bits (361), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 76/206 (36%), Positives = 135/206 (65%), Gaps = 3/206 (1%)

Query: 6   KKPNPKEALRESKREMQHATRGMEKEIGALQQEEKKLVAEIKRTAKTGNEGATKILARQL 65
           KK    + ++E  RE++   R + ++  AL+++EK+L  EIK+ AK GN+ A K+LA+QL
Sbjct: 6   KKKTVDDVIKEQNRELRGTQRAIIRDRAALEKQEKQLELEIKKMAKIGNKEACKVLAKQL 65

Query: 66  IRLRQQIANLQGSRAQIRGIATHTQAMHAHSSVAVGMKGASKAMAAMNKQMEPAKQAKVM 125
           + LR+Q        +++  ++T T+ M++   +A  M   +K M A+NK+M+P K  + M
Sbjct: 66  VHLRKQKTRTFAVSSKVTSMSTQTKVMNSQMKMAGAMSTTAKTMQAVNKKMDPQKTLQTM 125

Query: 126 REFQKQSAQMDMTTEMMSDTIDDALDNDEAEEETEELTNQVLDEIGVDVASQLSAAPKG- 184
           + FQK++ +M+MT EM++DT+DD  D  + EEE++++ NQVLDEIG++++ +++ AP   
Sbjct: 126 QNFQKENMKMEMTEEMINDTLDDIFDGSDDEEESQDIVNQVLDEIGIEISGKMAKAPSAA 185

Query: 185 -KIASKNTEDASSSGIDELEKRLAAL 209
             + S +T  A+ S  +E+E++L AL
Sbjct: 186 RSLPSASTSKATISD-EEIERQLKAL 210

Probable core component of the endosomal sorting required for transport complex III (ESCRT-III) which is involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. MVBs contain intraluminal vesicles (ILVs) that are generated by invagination and scission from the limiting membrane of the endosome and mostly are delivered to lysosomes enabling degradation of membrane proteins, such as stimulated growth factor receptors, lysosomal enzymes and lipids. The MVB pathway appears to require the sequential function of ESCRT-O, -I,-II and -III complexes. ESCRT-III proteins mostly dissociate from the invaginating membrane before the ILV is released. The ESCRT machinery also functions in topologically equivalent membrane fission events, such as the terminal stages of cytokinesis and the budding of enveloped viruses (HIV-1 and other lentiviruses). ESCRT-III proteins are believed to mediate the necessary vesicle extrusion and/or membrane fission activities, possibly in conjunction with the AAA ATPase VPS4.

Homo sapiens (taxid: 9606)

>sp|Q6NXD2|CHM2B_DANRE Charged multivesicular body protein 2b OS=Danio rerio GN=chmp2b PE=2 SV=1

 Score =  143 bits (360), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 74/211 (35%), Positives = 137/211 (64%), Gaps = 2/211 (0%)

Query: 1   MNIFSKKPNPKEALRESKREMQHATRGMEKEIGALQQEEKKLVAEIKRTAKTGNEGATKI 60
           M    KK    + ++E  +E++   R + ++  AL+++EK+L  EIK+ AKTGN  A K+
Sbjct: 1   MTSLFKKKTVDDVIKEQNKELRGTQRQIARDRTALEKQEKQLEMEIKKMAKTGNRDACKV 60

Query: 61  LARQLIRLRQQIANLQGSRAQIRGIATHTQAMHAHSSVAVGMKGASKAMAAMNKQMEPAK 120
           LA+QL+++R+Q        +++  ++T T+ M++   +A  M   +K M A+NK+M+P K
Sbjct: 61  LAKQLVQVRKQKTRTYAVSSKVTSMSTQTKLMNSQMKMAGAMATTTKTMQAVNKKMDPKK 120

Query: 121 QAKVMREFQKQSAQMDMTTEMMSDTIDDALDNDEAEEETEELTNQVLDEIGVDVASQLSA 180
             + ++ FQK++A+MDMT EMM+DT+D+  ++   EEE++++ NQVLDEIG++++ +++ 
Sbjct: 121 TMQTLQNFQKETAKMDMTEEMMNDTLDEIFEDSGDEEESQDIVNQVLDEIGIEISGKMAH 180

Query: 181 APKGKIASKNTEDASSSGI--DELEKRLAAL 209
           AP     + +   A + GI  +++E++L AL
Sbjct: 181 APSAARKTPSAATAKADGISDEDIERQLKAL 211

Probable core component of the endosomal sorting required for transport complex III (ESCRT-III) which is involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. MVBs contain intraluminal vesicles (ILVs) that are generated by invagination and scission from the limiting membrane of the endosome and mostly are delivered to lysosomes enabling degradation of membrane proteins, such as stimulated growth factor receptors, lysosomal enzymes and lipids.

Danio rerio (taxid: 7955)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	212
351724657	212	uncharacterized protein LOC100306343 [Gl	1.0	1.0	0.877	1e-103
224062129	212	predicted protein [Populus trichocarpa]	1.0	1.0	0.877	1e-102
225438079	212	PREDICTED: vacuolar protein sorting-asso	0.995	0.995	0.886	1e-102
18379185	210	vacuolar protein sorting-associated prot	0.990	1.0	0.857	1e-100
224085668	212	predicted protein [Populus trichocarpa]	1.0	1.0	0.900	1e-100
297848616	210	SNF7 family protein [Arabidopsis lyrata	0.990	1.0	0.852	2e-99
351721251	212	uncharacterized protein LOC100499888 [Gl	1.0	1.0	0.877	4e-98
388517335	212	unknown [Lotus japonicus]	1.0	1.0	0.863	4e-95
4204294	213	Similar to human BC-2 protein [Arabidops	0.981	0.976	0.813	4e-94
255577940	212	Charged multivesicular body protein 2a,	1.0	1.0	0.877	9e-93

>gi|351724657|ref|NP_001237321.1| uncharacterized protein LOC100306343 [Glycine max] gi|255628255|gb|ACU14472.1| unknown [Glycine max]

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 186/212 (87%), Positives = 203/212 (95%)

Query: 1   MNIFSKKPNPKEALRESKREMQHATRGMEKEIGALQQEEKKLVAEIKRTAKTGNEGATKI 60
           MNIF+KKP  KEALR+SKR+M +ATRG+EKEIGALQ EEKKLVAEIKRTAKTGNE ATKI
Sbjct: 1   MNIFTKKPTAKEALRDSKRQMTNATRGIEKEIGALQLEEKKLVAEIKRTAKTGNEAATKI 60

Query: 61  LARQLIRLRQQIANLQGSRAQIRGIATHTQAMHAHSSVAVGMKGASKAMAAMNKQMEPAK 120
           LARQLIRLRQQIANLQGSRAQ+RGIATHTQAMHAHSSVAVG+KGA+KAM AMNKQMEPAK
Sbjct: 61  LARQLIRLRQQIANLQGSRAQMRGIATHTQAMHAHSSVAVGLKGATKAMVAMNKQMEPAK 120

Query: 121 QAKVMREFQKQSAQMDMTTEMMSDTIDDALDNDEAEEETEELTNQVLDEIGVDVASQLSA 180
           QAK++++FQKQSAQMDMTTEMMSD IDDALDNDEA+EETEELTNQVLDEIGVDVASQLSA
Sbjct: 121 QAKIIQDFQKQSAQMDMTTEMMSDAIDDALDNDEAKEETEELTNQVLDEIGVDVASQLSA 180

Query: 181 APKGKIASKNTEDASSSGIDELEKRLAALRNP 212
           APKG++A+KN E+ SSSGIDELEKRLAALRNP
Sbjct: 181 APKGRVATKNAENVSSSGIDELEKRLAALRNP 212

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224062129|ref|XP_002300769.1| predicted protein [Populus trichocarpa] gi|118489303|gb|ABK96456.1| unknown [Populus trichocarpa x Populus deltoides] gi|222842495|gb|EEE80042.1| predicted protein [Populus trichocarpa]

 Score =  376 bits (966), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 186/212 (87%), Positives = 202/212 (95%)

Query: 1   MNIFSKKPNPKEALRESKREMQHATRGMEKEIGALQQEEKKLVAEIKRTAKTGNEGATKI 60
           M++F+KKPNPKEALR+SKREMQ++TRG+EKEIGALQ EEKKLVAEIKRTAKTGNE ATKI
Sbjct: 1   MSLFNKKPNPKEALRDSKREMQNSTRGLEKEIGALQLEEKKLVAEIKRTAKTGNEAATKI 60

Query: 61  LARQLIRLRQQIANLQGSRAQIRGIATHTQAMHAHSSVAVGMKGASKAMAAMNKQMEPAK 120
           LARQLIRLRQQIANLQGSRAQ+RGIATHTQAMHA SSVAVG+KGA+KAM A+NKQM PAK
Sbjct: 61  LARQLIRLRQQIANLQGSRAQMRGIATHTQAMHAQSSVAVGLKGANKAMEAVNKQMAPAK 120

Query: 121 QAKVMREFQKQSAQMDMTTEMMSDTIDDALDNDEAEEETEELTNQVLDEIGVDVASQLSA 180
           Q KV+REFQKQSAQMDMTTEMMSD IDDA+D+DEAEEET+ELTNQVLDEIGVDVASQLSA
Sbjct: 121 QMKVIREFQKQSAQMDMTTEMMSDAIDDAVDSDEAEEETDELTNQVLDEIGVDVASQLSA 180

Query: 181 APKGKIASKNTEDASSSGIDELEKRLAALRNP 212
           APKGKIA KN E+ASSSGIDELEKRLA LRNP
Sbjct: 181 APKGKIAGKNRENASSSGIDELEKRLATLRNP 212

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225438079|ref|XP_002276413.1| PREDICTED: vacuolar protein sorting-associated protein 2 homolog 3 [Vitis vinifera] gi|297744171|emb|CBI37141.3| unnamed protein product [Vitis vinifera]

 Score =  376 bits (965), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 187/211 (88%), Positives = 199/211 (94%)

Query: 1   MNIFSKKPNPKEALRESKREMQHATRGMEKEIGALQQEEKKLVAEIKRTAKTGNEGATKI 60
           MNIFSKKP  KEALRESKREM +ATRG+EKEIG+LQ EEKKLVAEIKRTAKTGNE ATKI
Sbjct: 1   MNIFSKKPTAKEALRESKREMNNATRGIEKEIGSLQLEEKKLVAEIKRTAKTGNEAATKI 60

Query: 61  LARQLIRLRQQIANLQGSRAQIRGIATHTQAMHAHSSVAVGMKGASKAMAAMNKQMEPAK 120
           LARQL+RLRQQIANLQGSRAQ+RGIATHTQAMHA++SV+VGMKGASKAMAAMNKQM PAK
Sbjct: 61  LARQLVRLRQQIANLQGSRAQMRGIATHTQAMHANTSVSVGMKGASKAMAAMNKQMAPAK 120

Query: 121 QAKVMREFQKQSAQMDMTTEMMSDTIDDALDNDEAEEETEELTNQVLDEIGVDVASQLSA 180
           QAKV++EFQ+QSAQMDMTTEMMSD IDDALDNDEAEEETE+LTNQVLDEIGVDVASQLSA
Sbjct: 121 QAKVIQEFQRQSAQMDMTTEMMSDAIDDALDNDEAEEETEDLTNQVLDEIGVDVASQLSA 180

Query: 181 APKGKIASKNTEDASSSGIDELEKRLAALRN 211
           APKGKIA K TED  SSGI ELEKRLAALRN
Sbjct: 181 APKGKIARKKTEDVGSSGISELEKRLAALRN 211

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18379185|ref|NP_563696.1| vacuolar protein sorting-associated protein 2.3 [Arabidopsis thaliana] gi|75249519|sp|Q941D5.1|VPS2C_ARATH RecName: Full=Vacuolar protein sorting-associated protein 2 homolog 3; Short=AtVPS2-3; AltName: Full=Charged multivesicular body protein 2 homolog 3; AltName: Full=ESCRT-III complex subunit VPS2 homolog 3 gi|15529228|gb|AAK97708.1| At1g03950/F21M11_12 [Arabidopsis thaliana] gi|16974377|gb|AAL31114.1| At1g03950/F21M11_12 [Arabidopsis thaliana] gi|332189516|gb|AEE27637.1| vacuolar protein sorting-associated protein 2.3 [Arabidopsis thaliana]

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 180/210 (85%), Positives = 197/210 (93%)

Query: 1   MNIFSKKPNPKEALRESKREMQHATRGMEKEIGALQQEEKKLVAEIKRTAKTGNEGATKI 60
           MNIF+KKPNP+E LRESKREM  ATRG+EKEIG+LQ EEKKLV EIKRTAK+GNEGATKI
Sbjct: 1   MNIFTKKPNPREVLRESKREMTQATRGIEKEIGSLQSEEKKLVLEIKRTAKSGNEGATKI 60

Query: 61  LARQLIRLRQQIANLQGSRAQIRGIATHTQAMHAHSSVAVGMKGASKAMAAMNKQMEPAK 120
           LARQLIRLRQQIANLQGSRAQ+RGIATHTQAMHAH+SVA GM+GA+KAMAAM+K M+PAK
Sbjct: 61  LARQLIRLRQQIANLQGSRAQMRGIATHTQAMHAHTSVAAGMQGATKAMAAMSKNMDPAK 120

Query: 121 QAKVMREFQKQSAQMDMTTEMMSDTIDDALDNDEAEEETEELTNQVLDEIGVDVASQLSA 180
           QAKVMREFQKQSAQMDMTTEMMSD+IDDALDNDEAE+ETE+LTNQVLDEIG+D+ASQLS+
Sbjct: 121 QAKVMREFQKQSAQMDMTTEMMSDSIDDALDNDEAEDETEDLTNQVLDEIGIDIASQLSS 180

Query: 181 APKGKIASKNTEDASSSGIDELEKRLAALR 210
           APKGKI  K  ED  SSGIDELEKRLAALR
Sbjct: 181 APKGKIGGKKAEDVGSSGIDELEKRLAALR 210

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224085668|ref|XP_002307657.1| predicted protein [Populus trichocarpa] gi|222857106|gb|EEE94653.1| predicted protein [Populus trichocarpa]

 Score =  370 bits (949), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 191/212 (90%), Positives = 201/212 (94%)

Query: 1   MNIFSKKPNPKEALRESKREMQHATRGMEKEIGALQQEEKKLVAEIKRTAKTGNEGATKI 60
           MN+FSKKP+PKEALR+SKREMQHATRG+E+EIGALQ EEKKLVAEIKRTAKTGN+ ATKI
Sbjct: 1   MNLFSKKPSPKEALRDSKREMQHATRGIEREIGALQLEEKKLVAEIKRTAKTGNDAATKI 60

Query: 61  LARQLIRLRQQIANLQGSRAQIRGIATHTQAMHAHSSVAVGMKGASKAMAAMNKQMEPAK 120
           LARQLIRLRQQIANLQGSRAQ+RGIATHTQAMHA SSVAVG+KGASKAM AMNKQM PAK
Sbjct: 61  LARQLIRLRQQIANLQGSRAQMRGIATHTQAMHAQSSVAVGLKGASKAMEAMNKQMAPAK 120

Query: 121 QAKVMREFQKQSAQMDMTTEMMSDTIDDALDNDEAEEETEELTNQVLDEIGVDVASQLSA 180
           Q KV+REFQKQSAQMDMTTEMMSD IDDALDNDEAEEETEELTNQVLDEIGVDVASQLS 
Sbjct: 121 QMKVIREFQKQSAQMDMTTEMMSDAIDDALDNDEAEEETEELTNQVLDEIGVDVASQLSV 180

Query: 181 APKGKIASKNTEDASSSGIDELEKRLAALRNP 212
           APKGKI  KN EDASSSGIDELEKRLAA+RNP
Sbjct: 181 APKGKITGKNREDASSSGIDELEKRLAAMRNP 212

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297848616|ref|XP_002892189.1| SNF7 family protein [Arabidopsis lyrata subsp. lyrata] gi|297338031|gb|EFH68448.1| SNF7 family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  367 bits (942), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 179/210 (85%), Positives = 196/210 (93%)

Query: 1   MNIFSKKPNPKEALRESKREMQHATRGMEKEIGALQQEEKKLVAEIKRTAKTGNEGATKI 60
           MNIF+KKPNP+E LRESKREM  ATRG+EKEIG+LQ EEKKLV EIKRTAK+GNEGATKI
Sbjct: 1   MNIFTKKPNPREVLRESKREMTQATRGIEKEIGSLQSEEKKLVLEIKRTAKSGNEGATKI 60

Query: 61  LARQLIRLRQQIANLQGSRAQIRGIATHTQAMHAHSSVAVGMKGASKAMAAMNKQMEPAK 120
           LARQLIRLRQQIANLQGSRAQ+RGIATHTQAMHAH+SVA GM+GA+KAMAAM+K M+PAK
Sbjct: 61  LARQLIRLRQQIANLQGSRAQMRGIATHTQAMHAHTSVAAGMQGATKAMAAMSKNMDPAK 120

Query: 121 QAKVMREFQKQSAQMDMTTEMMSDTIDDALDNDEAEEETEELTNQVLDEIGVDVASQLSA 180
           QAKVMREFQKQSAQMDMTTEMMSD IDDALDNDEAE+ETE+LTNQVLDEIG+D+ASQLS+
Sbjct: 121 QAKVMREFQKQSAQMDMTTEMMSDAIDDALDNDEAEDETEDLTNQVLDEIGIDIASQLSS 180

Query: 181 APKGKIASKNTEDASSSGIDELEKRLAALR 210
           APKGKI  KN E+  SS IDELEKRLAALR
Sbjct: 181 APKGKIGGKNAENVGSSEIDELEKRLAALR 210

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351721251|ref|NP_001237459.1| uncharacterized protein LOC100499888 [Glycine max] gi|255627453|gb|ACU14071.1| unknown [Glycine max]

 Score =  362 bits (930), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 186/212 (87%), Positives = 204/212 (96%)

Query: 1   MNIFSKKPNPKEALRESKREMQHATRGMEKEIGALQQEEKKLVAEIKRTAKTGNEGATKI 60
           MNIF+KKP  KEALRESKREM +A+RG+EKEIGALQ EEKKLVAEIKRTAKTGNE ATKI
Sbjct: 1   MNIFTKKPTAKEALRESKREMTNASRGIEKEIGALQSEEKKLVAEIKRTAKTGNEAATKI 60

Query: 61  LARQLIRLRQQIANLQGSRAQIRGIATHTQAMHAHSSVAVGMKGASKAMAAMNKQMEPAK 120
           LARQLIRLRQQIANLQGSRAQ+RGIATHTQAMHAHSSVAVG+KGA+KAMAAMNK+MEPAK
Sbjct: 61  LARQLIRLRQQIANLQGSRAQMRGIATHTQAMHAHSSVAVGLKGATKAMAAMNKKMEPAK 120

Query: 121 QAKVMREFQKQSAQMDMTTEMMSDTIDDALDNDEAEEETEELTNQVLDEIGVDVASQLSA 180
           QAK++++FQKQSAQMDMTTEMMSD IDDALDNDEAEEETEELTNQVLDEIGVDVASQLSA
Sbjct: 121 QAKIIQDFQKQSAQMDMTTEMMSDAIDDALDNDEAEEETEELTNQVLDEIGVDVASQLSA 180

Query: 181 APKGKIASKNTEDASSSGIDELEKRLAALRNP 212
           APKG++A+KN E+ SSSGI+ELEKRLAALR+P
Sbjct: 181 APKGRVATKNAENDSSSGIEELEKRLAALRDP 212

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388517335|gb|AFK46729.1| unknown [Lotus japonicus]

 Score =  352 bits (904), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 183/212 (86%), Positives = 201/212 (94%)

Query: 1   MNIFSKKPNPKEALRESKREMQHATRGMEKEIGALQQEEKKLVAEIKRTAKTGNEGATKI 60
           MN+FSKKP  KEALRESKREM +ATRG+E+EIG+LQ EEKKLVAEIKRTAK GNE ATK 
Sbjct: 1   MNLFSKKPTAKEALRESKREMANATRGIEREIGSLQLEEKKLVAEIKRTAKIGNEAATKT 60

Query: 61  LARQLIRLRQQIANLQGSRAQIRGIATHTQAMHAHSSVAVGMKGASKAMAAMNKQMEPAK 120
           LARQL+RLRQQIANLQGSRA++RGIATHTQAMHAHSSVAVGMKGASKA+AAMNKQM+PAK
Sbjct: 61  LARQLVRLRQQIANLQGSRARMRGIATHTQAMHAHSSVAVGMKGASKAVAAMNKQMDPAK 120

Query: 121 QAKVMREFQKQSAQMDMTTEMMSDTIDDALDNDEAEEETEELTNQVLDEIGVDVASQLSA 180
           QAKVM EFQKQSAQMDMTTEMMSD IDDA+DNDEAEEET+ELTNQVLDEIGVDVASQLS 
Sbjct: 121 QAKVMLEFQKQSAQMDMTTEMMSDAIDDAIDNDEAEEETDELTNQVLDEIGVDVASQLST 180

Query: 181 APKGKIASKNTEDASSSGIDELEKRLAALRNP 212
           APKG++++KNTE+ SSSGID+LEKRLAALRNP
Sbjct: 181 APKGRVSTKNTENVSSSGIDDLEKRLAALRNP 212

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|4204294|gb|AAD10675.1| Similar to human BC-2 protein [Arabidopsis thaliana]

 Score =  349 bits (895), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 175/215 (81%), Positives = 192/215 (89%), Gaps = 7/215 (3%)

Query: 1   MNIFSKKPNPKEALRESKREMQHATRGMEKEIGALQ-----QEEKKLVAEIKRTAKTGNE 55
           MNIF+KKPNP+E LRESKREM  ATRG    I A++     Q EKKLV EIKRTAK+GNE
Sbjct: 1   MNIFTKKPNPREVLRESKREMTQATRG--NRISAIRSMSVAQLEKKLVLEIKRTAKSGNE 58

Query: 56  GATKILARQLIRLRQQIANLQGSRAQIRGIATHTQAMHAHSSVAVGMKGASKAMAAMNKQ 115
           GATKILARQLIRLRQQIANLQGSRAQ+RGIATHTQAMHAH+SVA GM+GA+KAMAAM+K 
Sbjct: 59  GATKILARQLIRLRQQIANLQGSRAQMRGIATHTQAMHAHTSVAAGMQGATKAMAAMSKN 118

Query: 116 MEPAKQAKVMREFQKQSAQMDMTTEMMSDTIDDALDNDEAEEETEELTNQVLDEIGVDVA 175
           M+PAKQAKVMREFQKQSAQMDMTTEMMSD+IDDALDNDEAE+ETE+LTNQVLDEIG+D+A
Sbjct: 119 MDPAKQAKVMREFQKQSAQMDMTTEMMSDSIDDALDNDEAEDETEDLTNQVLDEIGIDIA 178

Query: 176 SQLSAAPKGKIASKNTEDASSSGIDELEKRLAALR 210
           SQLS+APKGKI  K  ED  SSGIDELEKRLAALR
Sbjct: 179 SQLSSAPKGKIGGKKAEDVGSSGIDELEKRLAALR 213

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255577940|ref|XP_002529842.1| Charged multivesicular body protein 2a, putative [Ricinus communis] gi|223530670|gb|EEF32543.1| Charged multivesicular body protein 2a, putative [Ricinus communis]

 Score =  345 bits (884), Expect = 9e-93,   Method: Compositional matrix adjust.
 Identities = 186/212 (87%), Positives = 201/212 (94%)

Query: 1   MNIFSKKPNPKEALRESKREMQHATRGMEKEIGALQQEEKKLVAEIKRTAKTGNEGATKI 60
           MNIF KKPNP+EALRESKREMQHATRG+EKEIGALQ EEKKLVAEIKRTAKTGNE ATK+
Sbjct: 1   MNIFKKKPNPREALRESKREMQHATRGIEKEIGALQSEEKKLVAEIKRTAKTGNEAATKV 60

Query: 61  LARQLIRLRQQIANLQGSRAQIRGIATHTQAMHAHSSVAVGMKGASKAMAAMNKQMEPAK 120
           LARQL+RLRQQIANLQGSRAQIRGIATHTQAMHA SSVAVG+KGA+KAMA+MNKQM PAK
Sbjct: 61  LARQLVRLRQQIANLQGSRAQIRGIATHTQAMHAQSSVAVGLKGATKAMASMNKQMAPAK 120

Query: 121 QAKVMREFQKQSAQMDMTTEMMSDTIDDALDNDEAEEETEELTNQVLDEIGVDVASQLSA 180
           QA+V+REFQKQSAQMDMTTEMMS+ IDDALD+DEAEEET+ELT+QVLDEIGVD+ASQLS 
Sbjct: 121 QAQVIREFQKQSAQMDMTTEMMSEAIDDALDDDEAEEETDELTDQVLDEIGVDIASQLST 180

Query: 181 APKGKIASKNTEDASSSGIDELEKRLAALRNP 212
           APKGKIA KN E  SSSGIDELE+RLAALRNP
Sbjct: 181 APKGKIAGKNKEGVSSSGIDELEQRLAALRNP 212

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	212
TAIR|locus:2024107	210	VPS2.3 "vacuolar protein sorti	0.990	1.0	0.723	2.8e-73
TAIR|locus:2163396	222	VPS2.2 [Arabidopsis thaliana (	0.990	0.945	0.590	1.9e-58
TAIR|locus:2054612	225	VPS2.1 [Arabidopsis thaliana (	0.990	0.933	0.355	7.1e-29
UNIPROTKB|F1NR65	214	CHMP2B "Charged multivesicular	0.976	0.967	0.304	2.8e-27
UNIPROTKB|Q5F3A2	214	CHMP2B "Charged multivesicular	0.976	0.967	0.3	5.7e-27
ZFIN|ZDB-GENE-040426-2539	263	chmp2bb "chromatin modifying p	0.976	0.787	0.304	7.3e-27
DICTYBASE|DDB_G0292400	198	vps2B "SNF7 family protein" [D	0.896	0.959	0.341	6.6e-26
UNIPROTKB|Q9UQN3	213	CHMP2B "Charged multivesicular	0.971	0.967	0.3	6.6e-26
UNIPROTKB|E2R417	213	CHMP2B "Uncharacterized protei	0.971	0.967	0.295	1.4e-25
UNIPROTKB|F2Z5Q1	213	CHMP2B "Uncharacterized protei	0.971	0.967	0.295	1.4e-25

TAIR|locus:2024107 VPS2.3 "vacuolar protein sorting-associated protein 2.3" [Arabidopsis thaliana (taxid:3702)]

 Score = 740 (265.6 bits), Expect = 2.8e-73, P = 2.8e-73
 Identities = 152/210 (72%), Positives = 164/210 (78%)

Query:     1 MNIFSKKPNPKEALRESKREMQHATRGMEKEIGALQQEEKKLVAEIKRTAKTGNEGATKI 60
             MNIF+KKPNP+E LRESKREM  ATRG+EKEIG+LQ EEKKLV EIKRTAK+GNEGATKI
Sbjct:     1 MNIFTKKPNPREVLRESKREMTQATRGIEKEIGSLQSEEKKLVLEIKRTAKSGNEGATKI 60

Query:    61 LARQLIRLRQQIANLQGSRAQIRGIATHTQAMHAHSSVXXXXXXXXXXXXXXXXQMEPAK 120
             LARQLIRLRQQIANLQGSRAQ+RGIATHTQAMHAH+SV                 M+PAK
Sbjct:    61 LARQLIRLRQQIANLQGSRAQMRGIATHTQAMHAHTSVAAGMQGATKAMAAMSKNMDPAK 120

Query:   121 QAKVMREFQKQSAQMDMTTEMMSDTIXXXXXXXXXXXXXXXXXXQVLDEIGVDVASQLSA 180
             QAKVMREFQKQSAQMDMTTEMMSD+I                  QVLDEIG+D+ASQLS+
Sbjct:   121 QAKVMREFQKQSAQMDMTTEMMSDSIDDALDNDEAEDETEDLTNQVLDEIGIDIASQLSS 180

Query:   181 APKGKIASKNTEDASSSGIDELEKRLAALR 210
             APKGKI  K  ED  SSGIDELEKRLAALR
Sbjct:   181 APKGKIGGKKAEDVGSSGIDELEKRLAALR 210

GO:0015031 "protein transport" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=ISS

GO:0000815 "ESCRT III complex" evidence=ISS

TAIR|locus:2163396 VPS2.2 [Arabidopsis thaliana (taxid:3702)]

 Score = 600 (216.3 bits), Expect = 1.9e-58, P = 1.9e-58
 Identities = 130/220 (59%), Positives = 155/220 (70%)

Query:     1 MNIFSKKPNPKEALRESKREMQHATRGMEKEIGALQQEEKKLVAEIKRTAKTGNEGATKI 60
             MNIF KK  PK+ALR SKREM  ATRG+E+EI +LQ EEK+LVAEIK+TAKTGNE ATKI
Sbjct:     1 MNIFKKKTTPKDALRTSKREMAVATRGIEREITSLQLEEKRLVAEIKKTAKTGNEAATKI 60

Query:    61 LARQLIRLRQQIANLQGSRAQIRGIATHTQAMHAHSSVXXXXXXXXXXXXXXXXQMEPAK 120
             LARQL+RLRQQI NLQGSRAQIRG+ THTQA++A +S+                QM P K
Sbjct:    61 LARQLVRLRQQITNLQGSRAQIRGVTTHTQALYASTSISSGMKGATKAMVAMNKQMAPTK 120

Query:   121 QAKVMREFQKQSAQMDMTTEMMSDTIXXXXXXXXXXXXXXXXXXQVLDEIGVDVASQLSA 180
             QAKV+++FQKQSAQ+DMT EMMS+ I                  QVLDEIGV VASQLS+
Sbjct:   121 QAKVIKDFQKQSAQLDMTIEMMSEAIDETLDKDEAEEETEDLTNQVLDEIGVGVASQLSS 180

Query:   181 APKGKIASKNT----------EDASSSGIDELEKRLAALR 210
             APKG+IA+K            +++ SS +DELEKRLA+LR
Sbjct:   181 APKGRIATKTAAPPASTAATNKNSESSEVDELEKRLASLR 220

GO:0005634 "nucleus" evidence=ISM

GO:0015031 "protein transport" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=ISS

GO:0000815 "ESCRT III complex" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0006260 "DNA replication" evidence=RCA

GO:0006306 "DNA methylation" evidence=RCA

GO:0008283 "cell proliferation" evidence=RCA

GO:0016572 "histone phosphorylation" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

TAIR|locus:2054612 VPS2.1 [Arabidopsis thaliana (taxid:3702)]

 Score = 321 (118.1 bits), Expect = 7.1e-29, P = 7.1e-29
 Identities = 79/222 (35%), Positives = 117/222 (52%)

Query:     1 MN-IFSKKPNPKEALRESKREMQHATRGMEKEIGALQQEEKKLVAEIKRTAKTGNEGATK 59
             MN IF K+  P E LRE+KR +  + R +E+E   LQ +EKKL+ EIK+TAK G  GA K
Sbjct:     2 MNSIFGKRKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLINEIKKTAKQGQMGAVK 61

Query:    60 ILARQLIRLRQQIANLQGSRAQIRGIATHTQAMHAHSSVXXXXXXXXXXXXXXXXQMEPA 119
             ++A+ LIR R QI      ++Q++G++   Q + +  ++                QM   
Sbjct:    62 VMAKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLP 121

Query:   120 KQAKVMREFQKQSAQMDMTTEMMSDTIXXXXXXXXXXXXXXXXXXQVLDEIGVDVASQLS 179
                K+M+EF++Q+ +M+M +E+M D I                  QVLDEIG+D+  +L 
Sbjct:   122 SLQKIMQEFERQNEKMEMVSEVMGDAIDDALEGDEEEEETEDLVSQVLDEIGIDINQELV 181

Query:   180 AAPKGKIA---SKN-------TEDASSSGID-ELEKRLAALR 210
              AP G +A   +KN       T    S GID +L+ RL  LR
Sbjct:   182 NAPSGAVAVPAAKNKVVQAEATGAEDSGGIDSDLQARLDNLR 223

GO:0015031 "protein transport" evidence=IEA;IMP

GO:0016192 "vesicle-mediated transport" evidence=ISS

GO:0000815 "ESCRT III complex" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0005771 "multivesicular body" evidence=IDA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

UNIPROTKB|F1NR65 CHMP2B "Charged multivesicular body protein 2b" [Gallus gallus (taxid:9031)]

 Score = 306 (112.8 bits), Expect = 2.8e-27, P = 2.8e-27
 Identities = 64/210 (30%), Positives = 119/210 (56%)

Query:     2 NIFSKKPNPKEALRESKREMQHATRGMEKEIGALQQEEKKLVAEIKRTAKTGNEGATKIL 61
             ++F KK    + ++E  RE++   R + ++  AL+++EK+L  EIK+ AKTGN+ A K+L
Sbjct:     3 SLFKKK-TVDDIIKEQNRELRGTQRTITRDRAALEKQEKQLELEIKKMAKTGNKEACKVL 61

Query:    62 ARQLIRLRQQIANLQGSRAQIRGIATHTQAMHAHSSVXXXXXXXXXXXXXXXXQMEPAKQ 121
             A+QL++LR+Q        +++  ++T T+ M++   +                +M+P K 
Sbjct:    62 AKQLVQLRKQKNRTYAVSSKVTSMSTQTKVMNSQMKMAGAMSTTAKTMQAVNKKMDPQKT 121

Query:   122 AKVMREFQKQSAQMDMTTEMMSDTIXXXXXXXXXXXXXXXXXXQVLDEIGVDVASQLSAA 181
              + M+ FQK++ +M+MT EM++DT+                  QVLDEIG++++ +++ A
Sbjct:   122 LQTMQNFQKENMKMEMTEEMINDTLDDIFDASDEEEESQDIVNQVLDEIGIEISGKMAKA 181

Query:   182 PKGK--IASKNTEDASSSGIDELEKRLAAL 209
             P     + S +T  AS+   +E+E++L AL
Sbjct:   182 PSAARGLPSASTSKASTISDEEIERQLKAL 211

GO:0015031 "protein transport" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0019904 "protein domain specific binding" evidence=IEA

UNIPROTKB|Q5F3A2 CHMP2B "Charged multivesicular body protein 2b" [Gallus gallus (taxid:9031)]

 Score = 303 (111.7 bits), Expect = 5.7e-27, P = 5.7e-27
 Identities = 63/210 (30%), Positives = 119/210 (56%)

Query:     2 NIFSKKPNPKEALRESKREMQHATRGMEKEIGALQQEEKKLVAEIKRTAKTGNEGATKIL 61
             ++F KK    + ++E  RE++   R + ++  AL+++E++L  EIK+ AKTGN+ A K+L
Sbjct:     3 SLFKKK-TVDDIIKEQNRELRGTQRTITRDRAALEKQERQLELEIKKMAKTGNKEACKVL 61

Query:    62 ARQLIRLRQQIANLQGSRAQIRGIATHTQAMHAHSSVXXXXXXXXXXXXXXXXQMEPAKQ 121
             A+QL++LR+Q        +++  ++T T+ M++   +                +M+P K 
Sbjct:    62 AKQLVQLRKQKNRTYAVSSKVTSMSTQTKVMNSQMKMAGAMSTTAKTMQAVNKKMDPQKT 121

Query:   122 AKVMREFQKQSAQMDMTTEMMSDTIXXXXXXXXXXXXXXXXXXQVLDEIGVDVASQLSAA 181
              + M+ FQK++ +M+MT EM++DT+                  QVLDEIG++++ +++ A
Sbjct:   122 LQTMQNFQKENMKMEMTEEMINDTLDDIFDASDEEEESQDIVNQVLDEIGIEISGKMAKA 181

Query:   182 PKGK--IASKNTEDASSSGIDELEKRLAAL 209
             P     + S +T  AS+   +E+E++L AL
Sbjct:   182 PSAARGLPSASTSKASTISDEEIERQLKAL 211

GO:0015031 "protein transport" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0031902 "late endosome membrane" evidence=IEA

ZFIN|ZDB-GENE-040426-2539 chmp2bb "chromatin modifying protein 2Bb" [Danio rerio (taxid:7955)]

 Score = 302 (111.4 bits), Expect = 7.3e-27, P = 7.3e-27
 Identities = 64/210 (30%), Positives = 118/210 (56%)

Query:     2 NIFSKKPNPKEALRESKREMQHATRGMEKEIGALQQEEKKLVAEIKRTAKTGNEGATKIL 61
             ++F KK    + ++E  +E++   R + ++  AL+++EK+L  EIK+ AKTGN  A K+L
Sbjct:    52 SLFKKK-TVDDVIKEQNKELRGTQRQIARDRTALEKQEKQLEMEIKKMAKTGNRDACKVL 110

Query:    62 ARQLIRLRQQIANLQGSRAQIRGIATHTQAMHAHSSVXXXXXXXXXXXXXXXXQMEPAKQ 121
             A+QL+++R+Q        +++  ++T T+ M++   +                +M+P K 
Sbjct:   111 AKQLVQVRKQKTRTYAVSSKVTSMSTQTKLMNSQMKMAGAMATTTKTMQAVNKKMDPKKT 170

Query:   122 AKVMREFQKQSAQMDMTTEMMSDTIXXXXXXXXXXXXXXXXXXQVLDEIGVDVASQLSAA 181
              + ++ FQK++A+MDMT EMM+DT+                  QVLDEIG++++ +++ A
Sbjct:   171 MQTLQNFQKETAKMDMTEEMMNDTLDEIFEDSGDEEESQDIVNQVLDEIGIEISGKMAHA 230

Query:   182 PKGKIASKNTEDASSSGI-DE-LEKRLAAL 209
             P     + +   A + GI DE +E++L AL
Sbjct:   231 PSAARKTPSAATAKADGISDEDIERQLKAL 260

GO:0015031 "protein transport" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0031902 "late endosome membrane" evidence=IEA

DICTYBASE|DDB_G0292400 vps2B "SNF7 family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 293 (108.2 bits), Expect = 6.6e-26, P = 6.6e-26
 Identities = 66/193 (34%), Positives = 104/193 (53%)

Query:     1 MNIFSKKPNPKEALRESKREMQHATRGMEKEIGALQQEEKKLVAEIKRTAKTGNEGATKI 60
             M +F K+  PKE LRE++R +  + R +++E  ALQ +EKK++ +IK+ AK G   + KI
Sbjct:     1 MFLFGKQKTPKEVLRENQRNLNKSMREIDRERVALQNQEKKIILDIKKMAKQGQMNSAKI 60

Query:    61 LARQLIRLRQQIANLQGSRAQIRGIATHTQAMHAHSSVXXXXXXXXXXXXXXXXQMEPAK 120
             +A+ L+R R  I      + Q++ ++   Q + +  ++                QM   +
Sbjct:    61 MAKDLVRTRYHIQKFYEMKTQLQAVSLRIQTLQSTQAMAEAMKGVTKAMITMNRQMNLPQ 120

Query:   121 QAKVMREFQKQSAQMDMTTEMMSDTIXXXXXXXXXXXXXXXXXXQVLDEIGVDVASQLSA 180
               K+M EF++QS +MDM  EMM+DT+                  QVLDEIG+D+ASQL  
Sbjct:   121 FTKIMMEFEQQSDKMDMKEEMMNDTMDQVMEQDGEEEQSQEILNQVLDEIGIDLASQLVD 180

Query:   181 APK--G-KIASKN 190
             AP   G  +ASK+
Sbjct:   181 APTTVGTSVASKH 193

GO:0015031 "protein transport" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0010008 "endosome membrane" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

UNIPROTKB|Q9UQN3 CHMP2B "Charged multivesicular body protein 2b" [Homo sapiens (taxid:9606)]

 Score = 293 (108.2 bits), Expect = 6.6e-26, P = 6.6e-26
 Identities = 63/210 (30%), Positives = 117/210 (55%)

Query:     2 NIFSKKPNPKEALRESKREMQHATRGMEKEIGALQQEEKKLVAEIKRTAKTGNEGATKIL 61
             ++F KK    + ++E  RE++   R + ++  AL+++EK+L  EIK+ AK GN+ A K+L
Sbjct:     3 SLFKKK-TVDDVIKEQNRELRGTQRAIIRDRAALEKQEKQLELEIKKMAKIGNKEACKVL 61

Query:    62 ARQLIRLRQQIANLQGSRAQIRGIATHTQAMHAHSSVXXXXXXXXXXXXXXXXQMEPAKQ 121
             A+QL+ LR+Q        +++  ++T T+ M++   +                +M+P K 
Sbjct:    62 AKQLVHLRKQKTRTFAVSSKVTSMSTQTKVMNSQMKMAGAMSTTAKTMQAVNKKMDPQKT 121

Query:   122 AKVMREFQKQSAQMDMTTEMMSDTIXXXXXXXXXXXXXXXXXXQVLDEIGVDVASQLSAA 181
              + M+ FQK++ +M+MT EM++DT+                  QVLDEIG++++ +++ A
Sbjct:   122 LQTMQNFQKENMKMEMTEEMINDTLDDIFDGSDDEEESQDIVNQVLDEIGIEISGKMAKA 181

Query:   182 PKG--KIASKNTEDASSSGIDELEKRLAAL 209
             P     + S +T  A+ S  +E+E++L AL
Sbjct:   182 PSAARSLPSASTSKATISD-EEIERQLKAL 210

GO:0008219 "cell death" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0031902 "late endosome membrane" evidence=IEA

GO:0019904 "protein domain specific binding" evidence=IPI

GO:0005829 "cytosol" evidence=TAS

GO:0016044 "cellular membrane organization" evidence=TAS

GO:0016197 "endosomal transport" evidence=TAS

GO:0005622 "intracellular" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

UNIPROTKB|E2R417 CHMP2B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 290 (107.1 bits), Expect = 1.4e-25, P = 1.4e-25
 Identities = 62/210 (29%), Positives = 117/210 (55%)

Query:     2 NIFSKKPNPKEALRESKREMQHATRGMEKEIGALQQEEKKLVAEIKRTAKTGNEGATKIL 61
             ++F KK    + ++E  RE++   R + ++  AL+++EK+L  EIK+ AK GN+ A ++L
Sbjct:     3 SLFKKK-TVDDVIKEQNRELRGTQRAIIRDRAALEKQEKQLELEIKKMAKIGNKEACRVL 61

Query:    62 ARQLIRLRQQIANLQGSRAQIRGIATHTQAMHAHSSVXXXXXXXXXXXXXXXXQMEPAKQ 121
             A+QL+ LR+Q        +++  ++T T+ M++   +                +M+P K 
Sbjct:    62 AKQLVHLRKQKTRTFAVSSKVTSMSTQTKVMNSQMKMAGAMSTTAKTMQAVNKKMDPQKT 121

Query:   122 AKVMREFQKQSAQMDMTTEMMSDTIXXXXXXXXXXXXXXXXXXQVLDEIGVDVASQLSAA 181
              + M+ FQK++ +M+MT EM++DT+                  QVLDEIG++++ +++ A
Sbjct:   122 LQTMQNFQKENMKMEMTEEMINDTLDDIFDGSDDEEESQDIVNQVLDEIGIEISGKMAKA 181

Query:   182 PKG--KIASKNTEDASSSGIDELEKRLAAL 209
             P     + S +T  A+ S  +E+E++L AL
Sbjct:   182 PSAARSLPSASTSKATISD-EEIERQLKAL 210

GO:0019904 "protein domain specific binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

UNIPROTKB|F2Z5Q1 CHMP2B "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 290 (107.1 bits), Expect = 1.4e-25, P = 1.4e-25
 Identities = 62/210 (29%), Positives = 117/210 (55%)

Query:     2 NIFSKKPNPKEALRESKREMQHATRGMEKEIGALQQEEKKLVAEIKRTAKTGNEGATKIL 61
             ++F KK    + ++E  RE++   R + ++  AL+++EK+L  EIK+ AK GN+ A ++L
Sbjct:     3 SLFKKK-TVDDVIKEQNRELRGTQRAIIRDRAALEKQEKQLELEIKKMAKIGNKEACRVL 61

Query:    62 ARQLIRLRQQIANLQGSRAQIRGIATHTQAMHAHSSVXXXXXXXXXXXXXXXXQMEPAKQ 121
             A+QL+ LR+Q        +++  ++T T+ M++   +                +M+P K 
Sbjct:    62 AKQLVHLRKQKTRTFAVSSKVTSMSTQTKVMNSQMKMAGAMSTTAKTMQAVNKKMDPQKT 121

Query:   122 AKVMREFQKQSAQMDMTTEMMSDTIXXXXXXXXXXXXXXXXXXQVLDEIGVDVASQLSAA 181
              + M+ FQK++ +M+MT EM++DT+                  QVLDEIG++++ +++ A
Sbjct:   122 LQTMQNFQKENMKMEMTEEMINDTLDDIFDGSDDEEESQDIVNQVLDEIGIEISGKMAKA 181

Query:   182 PKG--KIASKNTEDASSSGIDELEKRLAAL 209
             P     + S +T  A+ S  +E+E++L AL
Sbjct:   182 PSAARSLPSASTSKATISD-EEIERQLKAL 210

GO:0019904 "protein domain specific binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q6NXD2	CHM2B_DANRE	No assigned EC number	0.3507	0.9858	0.9766	yes	no
Q54DB1	CM2A2_DICDI	No assigned EC number	0.4230	0.8584	0.9191	yes	no
Q0WTY4	VPS2B_ARATH	No assigned EC number	0.7090	0.9905	0.9459	no	no
P36108	DID4_YEAST	No assigned EC number	0.3475	0.8773	0.8017	yes	no
Q941D5	VPS2C_ARATH	No assigned EC number	0.8571	0.9905	1.0	yes	no
Q5RAV2	CHM2B_PONAB	No assigned EC number	0.3689	0.9575	0.9530	yes	no
Q6NVL7	CHM2B_XENTR	No assigned EC number	0.3666	0.9764	0.9672	yes	no
Q9UQN3	CHM2B_HUMAN	No assigned EC number	0.3689	0.9575	0.9530	yes	no
Q5F3A2	CHM2B_CHICK	No assigned EC number	0.3689	0.9622	0.9532	yes	no
Q3SX42	CHM2B_BOVIN	No assigned EC number	0.3605	0.9481	0.9436	yes	no
Q8BJF9	CHM2B_MOUSE	No assigned EC number	0.3640	0.9575	0.9530	yes	no
O14177	DID4_SCHPO	No assigned EC number	0.3560	0.9528	0.9619	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	212
pfam03357	169	pfam03357, Snf7, Snf7	2e-37
COG5491	204	COG5491, VPS24, Conserved protein implicated in se	2e-05
PTZ00446	191	PTZ00446, PTZ00446, vacuolar sorting protein SNF7-	1e-04

>gnl|CDD|146145 pfam03357, Snf7, Snf7

 Score =  127 bits (322), Expect = 2e-37
 Identities = 63/171 (36%), Positives = 99/171 (57%), Gaps = 2/171 (1%)

Query: 16  ESKREMQHATRGMEKEIGALQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLRQQIANL 75
           E+   ++ A R ++K+  +L+++ KKL AEIK+ AK GN+ A  IL +Q  R  +Q+  L
Sbjct: 1   EAILSLRKAIRELDKKQESLEKKIKKLEAEIKKLAKKGNKDAALILLKQKKRYEKQLDQL 60

Query: 76  QGSRAQIRGIATHTQAMHAHSSVAVGMKGASKAMAAMNKQMEPAKQAKVMREFQKQSAQM 135
            G  A +  +    +    +  V   MKG +KAM AMNK M+  K   +M E + Q  + 
Sbjct: 61  DGQLANLEQVRMAIENAKTNQEVLNAMKGGAKAMKAMNKNMDIDKIDDLMDEIEDQMEKA 120

Query: 136 DMTTEMMSDTIDDALDNDEAEEETEELTNQVLDEIGVDVASQLSAAPKGKI 186
           D  +EM+SDT+DDA  ++E EEE +   + +LDEIG +   +L +AP G +
Sbjct: 121 DEISEMLSDTLDDA--DEEDEEELDAELDALLDEIGDEELVELPSAPSGAL 169

This family of proteins are involved in protein sorting and transport from the endosome to the vacuole/lysosome in eukaryotic cells. Vacuoles/lysosomes play an important role in the degradation of both lipids and cellular proteins. In order to perform this degradative function, vacuoles/lysosomes contain numerous hydrolases which have been transported in the form of inactive precursors via the biosynthetic pathway and are proteolytically activated upon delivery to the vacuole/lysosome. The delivery of transmembrane proteins, such as activated cell surface receptors to the lumen of the vacuole/lysosome, either for degradation/downregulation, or in the case of hydrolases, for proper localisation, requires the formation of multivesicular bodies (MVBs). These late endosomal structures are formed by invaginating and budding of the limiting membrane into the lumen of the compartment. During this process, a subset of the endosomal membrane proteins is sorted into the forming vesicles. Mature MVBs fuse with the vacuole/lysosome, thereby releasing cargo containing vesicles into its hydrolytic lumen for degradation. Endosomal proteins that are not sorted into the intralumenal MVB vesicles are either recycled back to the plasma membrane or Golgi complex, or remain in the limiting membrane of the MVB and are thereby transported to the limiting membrane of the vacuole/lysosome as a consequence of fusion. Therefore, the MVB sorting pathway plays a critical role in the decision between recycling and degradation of membrane proteins. A few archaeal sequences are also present within this family. Length = 169

>gnl|CDD|227778 COG5491, VPS24, Conserved protein implicated in secretion [Cell motility and secretion]

 Score = 43.3 bits (102), Expect = 2e-05
 Identities = 41/156 (26%), Positives = 77/156 (49%), Gaps = 8/156 (5%)

Query: 35  LQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLR--QQIANLQGSRAQIRGIATHTQAM 92
           L+++ KKLV E+K+ AK G     +I  +   R R  +++  L+ +R+++    +  Q++
Sbjct: 5   LERQAKKLVRELKQEAKKGQVLLNEIAKKAPNRRRLAEELYKLRKARSRLDASISRLQSL 64

Query: 93  HAHSSVAVGMKGASKAMAAMNKQM-EPAKQAKVMREFQKQSAQMDMTT---EMMSDTIDD 148
                  V M+  S  MA     M E     ++M+ F+ Q   +++     E M + +D 
Sbjct: 65  DTMLFEKVVMRQVSGDMAKAAMYMNELESIRRIMQLFETQFLALELVQLRLETMDELMDV 124

Query: 149 ALDNDEAE--EETEELTNQVLDEIGVDVASQLSAAP 182
            + +   E  EE +EL N+VL EIG+++     + P
Sbjct: 125 VVGDPVLEDLEELDELVNKVLPEIGLELDESEQSLP 160

Length = 204

>gnl|CDD|240422 PTZ00446, PTZ00446, vacuolar sorting protein SNF7-like; Provisional

 Score = 40.9 bits (95), Expect = 1e-04
 Identities = 36/176 (20%), Positives = 76/176 (43%), Gaps = 10/176 (5%)

Query: 4   FSKKPNPKEALRESKR----------EMQHATRGMEKEIGALQQEEKKLVAEIKRTAKTG 53
           F KK N  E     K+          + + A   +EK+   ++++ K+L  E K+  +  
Sbjct: 5   FGKKKNSSECSDNKKKNNDEIYKAILKNREAIDALEKKQVQVEKKIKQLEIEAKQKVEQN 64

Query: 54  NEGATKILARQLIRLRQQIANLQGSRAQIRGIATHTQAMHAHSSVAVGMKGASKAMAAMN 113
                KIL ++     Q+I N+  +R  +     + + MH H      +  A+     +N
Sbjct: 65  QMSNAKILLKRKKLYEQEIENILNNRLTLEDNMINLENMHLHKIAVNALSYAANTHKKLN 124

Query: 114 KQMEPAKQAKVMREFQKQSAQMDMTTEMMSDTIDDALDNDEAEEETEELTNQVLDE 169
            ++   K  K++   Q+     +   + +S  + + +D+DE ++E + L  Q ++E
Sbjct: 125 NEINTQKVEKIIDTIQENKDIQEEINQALSFNLLNNVDDDEIDKELDLLKEQTMEE 180

Length = 191

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	212
KOG3230	224	consensus Vacuolar assembly/sorting protein DID4 [	100.0
KOG3229	227	consensus Vacuolar sorting protein VPS24 [Intracel	100.0
KOG3231	208	consensus Predicted assembly/vacuolar sorting prot	100.0
KOG3232	203	consensus Vacuolar assembly/sorting protein DID2 [	100.0
PF03357	171	Snf7: Snf7; InterPro: IPR005024 This is a family o	99.94
PTZ00464	211	SNF-7-like protein; Provisional	99.93
KOG1656	221	consensus Protein involved in glucose derepression	99.87
PTZ00446	191	vacuolar sorting protein SNF7-like; Provisional	99.87
KOG2910	209	consensus Uncharacterized conserved protein predic	99.81
KOG1655	218	consensus Protein involved in vacuolar protein sor	99.79
COG5491	204	VPS24 Conserved protein implicated in secretion [C	99.42
KOG2911	439	consensus Uncharacterized conserved protein [Funct	99.35
PRK10698	222	phage shock protein PspA; Provisional	98.4
COG5491	204	VPS24 Conserved protein implicated in secretion [C	98.26
PTZ00464	211	SNF-7-like protein; Provisional	98.13
TIGR02977	219	phageshock_pspA phage shock protein A. Members of	98.03
PTZ00446	191	vacuolar sorting protein SNF7-like; Provisional	97.83
KOG3230	224	consensus Vacuolar assembly/sorting protein DID4 [	97.63
PF04012	221	PspA_IM30: PspA/IM30 family; InterPro: IPR007157 T	97.45
PF03357	171	Snf7: Snf7; InterPro: IPR005024 This is a family o	97.39
KOG1656	221	consensus Protein involved in glucose derepression	97.11
KOG3229	227	consensus Vacuolar sorting protein VPS24 [Intracel	97.06
KOG3231	208	consensus Predicted assembly/vacuolar sorting prot	96.65
KOG2910	209	consensus Uncharacterized conserved protein predic	96.37
COG1842	225	PspA Phage shock protein A (IM30), suppresses sigm	95.94
PF03398	165	Ist1: Regulator of Vps4 activity in the MVB pathwa	95.81
KOG3232	203	consensus Vacuolar assembly/sorting protein DID2 [	94.72
KOG1655	218	consensus Protein involved in vacuolar protein sor	86.35
COG1937	89	Uncharacterized protein conserved in bacteria [Fun	86.1
PRK15039	90	transcriptional repressor RcnR to maintain nickel	81.36
KOG2911	439	consensus Uncharacterized conserved protein [Funct	80.67

>KOG3230 consensus Vacuolar assembly/sorting protein DID4 [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.9e-51  Score=324.09  Aligned_cols=211  Identities=50%  Similarity=0.720  Sum_probs=197.1

Q ss_pred             CCCCCCCCChHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028201            1 MNIFSKKPNPKEALRESKREMQHATRGMEKEIGALQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLRQQIANLQGSRA   80 (212)
Q Consensus         1 m~~fg~~~~pke~~r~~~~~lr~~~r~Ldre~~kle~~e~kl~~~ik~a~kkg~~~~ari~Ak~lvr~rk~~~~l~~~~a   80 (212)
                      |++||++++|.|.+|+++|.|.+..|+|+|++.+|+.+++|+...||+.+|.|+.+++||+|++|||.|+++.+|+.+++
T Consensus         1 m~lFgk~~tp~e~Lr~nqRal~~a~ReleRer~~le~qeKklvaeIKk~AK~gq~~A~KimAkdLvRtR~~i~kf~~~ka   80 (224)
T KOG3230|consen    1 MDLFGKKKTPAELLRENQRALNKATRELERERQKLELQEKKLVAEIKKTAKQGQMDAVKIMAKDLVRTRRYIKKFQNMKA   80 (224)
T ss_pred             CCcccCCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhHHHHHhhhhhhcccchhhHHHHH
Q 028201           81 QIRGIATHTQAMHAHSSVAVGMKGASKAMAAMNKQMEPAKQAKVMREFQKQSAQMDMTTEMMSDTIDDALDNDEAEEETE  160 (212)
Q Consensus        81 ql~~v~~~l~~a~~~~~~~~am~~~~~~mk~~n~~~~~~~i~~~m~~f~~e~~~~~~~~e~m~d~~~~~~~~~~~eee~d  160 (212)
                      ||.+|+.++++.+++..++.+|++++++|..||+.||+|+++++|.+|++|++.|++.+|||+|++|++++++++|+|.|
T Consensus        81 qiqaVSl~iQtlkss~sma~aMkGaTkam~~MNrqmnlpq~qkIm~eFekQse~Mdm~~Emm~daIDdal~~~edEEEtd  160 (224)
T KOG3230|consen   81 QIQAVSLRIQTLKSSTSMAQAMKGATKAMAGMNRQMNLPQIQKIMQEFEKQSEIMDMKEEMMDDAIDDALGDDEDEEETD  160 (224)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcchhhhhcccCCCCCC--------CCCCc----cCCCCccHHHHHHHHHhhcC
Q 028201          161 ELTNQVLDEIGVDVASQLSAAPKGKI--------ASKNT----EDASSSGIDELEKRLAALRN  211 (212)
Q Consensus       161 ~~~~~v~~E~~~~~~~~l~~ap~~~~--------~~~~~----~~~~~~~~~~l~~RL~aLr~  211 (212)
                      +++++||||+|++++.+|.++|++..        ..+++    .+.....+|+|++||++||.
T Consensus       161 ~lvnqVLDEiGvdl~~qL~~~P~~~~~~~~a~~ig~~~a~~~gs~~~~~~dddLqaRL~~Lrk  223 (224)
T KOG3230|consen  161 DLVNQVLDEIGVDLASQLSSLPSAAGSLPIAKTIGGKKAEAAGSEFHSDADDDLQARLDNLRK  223 (224)
T ss_pred             HHHHHHHHHHcccHHHHhccCcccccccchhhccCCccccccccccCCCchhHHHHHHHHHhc
Confidence            99999999999999999999998221        11111    11223568999999999986

>KOG3229 consensus Vacuolar sorting protein VPS24 [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.4e-46  Score=299.78  Aligned_cols=211  Identities=29%  Similarity=0.482  Sum_probs=191.7

Q ss_pred             CCCCCC--CCChHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHH
Q 028201            1 MNIFSK--KPNPKEALRESKREMQHATRGMEKEIGALQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLRQQIANLQGS   78 (212)
Q Consensus         1 m~~fg~--~~~pke~~r~~~~~lr~~~r~Ldre~~kle~~e~kl~~~ik~a~kkg~~~~ari~Ak~lvr~rk~~~~l~~~   78 (212)
                      |++||+  +|||||++|+|++.||++.|.|||+++.+++++++.+..||+++|+||..+|++|||++++.||++.+||..
T Consensus         1 ~~l~~~~~~pdPKEq~r~wq~kiRke~r~ldrqir~iqree~kv~~~iK~aAKknD~~t~~iLAKEiv~srk~v~Rly~s   80 (227)
T KOG3229|consen    1 MGLFGKTPGPDPKEQVREWQSKIRKEGRQLDRQIRDIQREEEKVQKSIKQAAKKNDKDTCRILAKEIVQSRKAVKRLYES   80 (227)
T ss_pred             CCccccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            678987  799999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhHHHHHhhhhhhcccchhhHHH
Q 028201           79 RAQIRGIATHTQAMHAHSSVAVGMKGASKAMAAMNKQMEPAKQAKVMREFQKQSAQMDMTTEMMSDTIDDALDNDEAEEE  158 (212)
Q Consensus        79 ~aql~~v~~~l~~a~~~~~~~~am~~~~~~mk~~n~~~~~~~i~~~m~~f~~e~~~~~~~~e~m~d~~~~~~~~~~~eee  158 (212)
                      +|||+||.++|..+.++..+.++|++++.+|+.+|+++.+|++..||.+|+++|++.|+|+||++++|+++.|+++.+++
T Consensus        81 KAqlnSv~M~l~eqla~~r~~G~lqkStevMk~v~sLvk~Pel~~TMrelSkEmmKaGIIEEmvdet~esv~d~eemeEe  160 (227)
T KOG3229|consen   81 KAQLNSVSMQLKEQLATLRVAGSLQKSTEVMKAVNSLVKLPELAATMRELSKEMMKAGIIEEMVDETMESVEDSEEMEEE  160 (227)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999888889999


Q ss_pred             HHHHHHHHHHHhcchhhhhcccCCCCC----CCCC--Cc-------cC-CCCccHHHHHHHHHhhcC
Q 028201          159 TEELTNQVLDEIGVDVASQLSAAPKGK----IASK--NT-------ED-ASSSGIDELEKRLAALRN  211 (212)
Q Consensus       159 ~d~~~~~v~~E~~~~~~~~l~~ap~~~----~~~~--~~-------~~-~~~~~~~~l~~RL~aLr~  211 (212)
                      +|++|++|+.+|..+-.+.+|.+|...    ++..  +.       +. +.+++..+|+.||++||+
T Consensus       161 ~deEVdkIL~~it~~~~~~~p~a~~~~~~~~~~~~a~p~~~~~a~~d~~e~eE~le~mr~RLa~lrs  227 (227)
T KOG3229|consen  161 ADEEVDKILTEITGEKAGEAPLAVTATLAAVPAEKASPSAKEDAAEDGVEEEEELEEMRSRLAALRS  227 (227)
T ss_pred             HHHHHHHHHHHHhccccccCCcchHHHHhcCccccCCCcchhhhhhccchHHHHHHHHHHHHHHhcC
Confidence            999999999999988777777776543    1111  10       00 011246799999999996

>KOG3231 consensus Predicted assembly/vacuolar sorting protein [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.7e-42  Score=268.02  Aligned_cols=208  Identities=39%  Similarity=0.644  Sum_probs=194.8

Q ss_pred             CCCCCCCCChHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028201            1 MNIFSKKPNPKEALRESKREMQHATRGMEKEIGALQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLRQQIANLQGSRA   80 (212)
Q Consensus         1 m~~fg~~~~pke~~r~~~~~lr~~~r~Ldre~~kle~~e~kl~~~ik~a~kkg~~~~ari~Ak~lvr~rk~~~~l~~~~a   80 (212)
                      +++|++ |||+|..|++.|.||++.|.|+|+++++++++++|+.+||+.++.||.++||++|++||..|+|..+-+...+
T Consensus         1 ~niF~K-ktvke~~ren~ReLRkt~RdierdRr~me~~Ek~LElEIkk~Aa~GnndAcr~LAKQLV~lRkQKtrt~a~s~   79 (208)
T KOG3231|consen    1 ANIFKK-KTVKEVIRENNRELRKTQRDIERDRRAMEKQEKQLELEIKKMAAIGNNDACRVLAKQLVHLRKQKTRTFAVSS   79 (208)
T ss_pred             CCcccC-CCHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHhhhhhhhhhh
Confidence            579996 6999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhHHHHHhhhhhhcccchhhHHHHH
Q 028201           81 QIRGIATHTQAMHAHSSVAVGMKGASKAMAAMNKQMEPAKQAKVMREFQKQSAQMDMTTEMMSDTIDDALDNDEAEEETE  160 (212)
Q Consensus        81 ql~~v~~~l~~a~~~~~~~~am~~~~~~mk~~n~~~~~~~i~~~m~~f~~e~~~~~~~~e~m~d~~~~~~~~~~~eee~d  160 (212)
                      ++.+++.|-..+.++..++++|.+.++.|+.+|+.|+|+++..+|.+|....++|++.+|||+|++|+.++.+++++|.+
T Consensus        80 ki~s~~~QnK~M~s~~km~~AMgTTaKTM~amNk~M~pek~~~tmr~FQ~anmKMemTeEMiNDTLDdild~sgDeeEs~  159 (208)
T KOG3231|consen   80 KITSMSTQNKVMNSQMKMAGAMGTTAKTMQAMNKKMDPEKTLQTMRNFQKANMKMEMTEEMINDTLDDILDGSGDEEESQ  159 (208)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHhchHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHhcCCCcHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcchhhhhcccCCCCCCCCCCccCCCCccHHHHHHHHHhhcC
Q 028201          161 ELTNQVLDEIGVDVASQLSAAPKGKIASKNTEDASSSGIDELEKRLAALRN  211 (212)
Q Consensus       161 ~~~~~v~~E~~~~~~~~l~~ap~~~~~~~~~~~~~~~~~~~l~~RL~aLr~  211 (212)
                      ++|++||||||+++++++..+|+.......++  ...+++|+++.|++||+
T Consensus       160 aiVNqVLDEIGIEisgKma~~P~a~s~~~~st--~kat~~Die~QLa~Lrs  208 (208)
T KOG3231|consen  160 AIVNQVLDEIGIEISGKMAKAPSARSLPSAST--SKATISDIERQLAALRS  208 (208)
T ss_pred             HHHHHHHHHhhhhhcchhccCCccCCCCcccc--CCCcHHHHHHHHHHhcC
Confidence            99999999999999999999996433211111  23578899999999985

>KOG3232 consensus Vacuolar assembly/sorting protein DID2 [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=5.7e-37  Score=238.70  Aligned_cols=196  Identities=24%  Similarity=0.393  Sum_probs=179.8

Q ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028201           12 EALRESKREMQHATRGMEKEIGALQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLRQQIANLQGSRAQIRGIATHTQA   91 (212)
Q Consensus        12 e~~r~~~~~lr~~~r~Ldre~~kle~~e~kl~~~ik~a~kkg~~~~ari~Ak~lvr~rk~~~~l~~~~aql~~v~~~l~~   91 (212)
                      ..+....+.|++..++|.|+..+|+++|+..+.++|+|+++||.+.|||||.++||+|++.-+|+++.+++++|.+++++
T Consensus         5 ~~le~~lf~LkF~sk~L~r~a~kceKeEK~Ek~K~kkAi~kgN~dvArIyAeNAIRkkne~~n~LrlssRvDAVaaRvqT   84 (203)
T KOG3232|consen    5 DKLENHLFDLKFTSKQLQRQAKKCEKEEKAEKAKLKKAIQKGNMDVARIYAENAIRKKNEAVNYLRLSSRVDAVAARVQT   84 (203)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45778899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhHHHHHhhhhhhcccchhhHHHHHHHHHHHHHHhc
Q 028201           92 MHAHSSVAVGMKGASKAMAAMNKQMEPAKQAKVMREFQKQSAQMDMTTEMMSDTIDDALDNDEAEEETEELTNQVLDEIG  171 (212)
Q Consensus        92 a~~~~~~~~am~~~~~~mk~~n~~~~~~~i~~~m~~f~~e~~~~~~~~e~m~d~~~~~~~~~~~eee~d~~~~~v~~E~~  171 (212)
                      +..+..++.+|.++.+.|....+.||+++|..+|+.|+.+|+.+++..+.|.++|++.+.-+.|.+++|.|+++|+||+|
T Consensus        85 avtmr~Vt~sM~gVvK~md~alktmNLekis~~MDkFE~qFedldvqt~~me~~m~~st~l~tpq~~Vd~Lmq~vADeaG  164 (203)
T KOG3232|consen   85 AVTMRKVTKSMAGVVKSMDSALKTMNLEKISQLMDKFEKQFEDLDVQTEVMEKAMSGSTALSTPQGDVDSLMQQVADEAG  164 (203)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhHHHHHHHhccCcccccCChhHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999999999999999887778899999999999999999


Q ss_pred             chhhhhcccC--CCCCCCCCCccCCCCccHHHHHHHHHhhcC
Q 028201          172 VDVASQLSAA--PKGKIASKNTEDASSSGIDELEKRLAALRN  211 (212)
Q Consensus       172 ~~~~~~l~~a--p~~~~~~~~~~~~~~~~~~~l~~RL~aLr~  211 (212)
                      ++++..||.-  |...+++   ... ..++|+|.+||++||+
T Consensus       165 lElnq~lp~~~~~a~~~~t---~~~-~~e~d~L~qRLaaLR~  202 (203)
T KOG3232|consen  165 LELNQELPQNVVPAISVKT---SAV-VDEEDDLTQRLAALRA  202 (203)
T ss_pred             hhhhhcCCCCCCCCcCCCC---ccc-cchhhHHHHHHHHHhc
Confidence            9999888763  3332221   112 2334999999999996

>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7

Probab=99.94  E-value=1.3e-26  Score=184.73  Aligned_cols=168  Identities=29%  Similarity=0.439  Sum_probs=138.1

Q ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028201           16 ESKREMQHATRGMEKEIGALQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLRQQIANLQGSRAQIRGIATHTQAMHAH   95 (212)
Q Consensus        16 ~~~~~lr~~~r~Ldre~~kle~~e~kl~~~ik~a~kkg~~~~ari~Ak~lvr~rk~~~~l~~~~aql~~v~~~l~~a~~~   95 (212)
                      ++++.|+.+.+.|++++.+|+.+.+++..++++++++|+...|++|++...+.+++..+++....+|+++..+|+++..+
T Consensus         1 eai~~Lk~~~~~L~~~~~~le~~i~~~~~~~k~~~~~~~~~~A~~~lk~~k~~~k~~~~~~~~~~~l~~~~~~ie~a~~~   80 (171)
T PF03357_consen    1 EAILKLKKTIRRLEKQIKRLEKKIKKLEKKAKKAIKKGNKERAKIYLKRKKRLEKQLEKLLNQLSNLESVLLQIETAQSN   80 (171)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhHHHHHhhhhhhcccchhhHHHHHHHHHHHHHHhcchh-
Q 028201           96 SSVAVGMKGASKAMAAMNKQMEPAKQAKVMREFQKQSAQMDMTTEMMSDTIDDALDNDEAEEETEELTNQVLDEIGVDV-  174 (212)
Q Consensus        96 ~~~~~am~~~~~~mk~~n~~~~~~~i~~~m~~f~~e~~~~~~~~e~m~d~~~~~~~~~~~eee~d~~~~~v~~E~~~~~-  174 (212)
                      ..++.+|+.++++|+.+|+.+++++|..+|++|.++++.+++++++|++.++..  +++++++++++++++++|++.+. 
T Consensus        81 ~~v~~al~~~~~~Lk~~~~~i~~~~v~~~~d~~~e~~e~~~ei~~~l~~~~~~~--~~~dd~ele~eL~~l~~e~~~~~~  158 (171)
T PF03357_consen   81 QQVVKALKQSSKALKKINKQINLDKVEKLMDDFQEEMEDQDEISEALSDSMDQV--DDVDDEELEEELEQLEDEIEEEEE  158 (171)
T ss_dssp             HHHSSS----SHHHHHHHHSTTSCCHHHHHHHHHHHHHHHTS------------------TTSTTCHHHHHHHCCCTTS-
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHccccCC--CCCCHHHHHHHHHHHHHHHhhhhh
Confidence            999999999999999999999999999999999999999999999999988754  34567899999999999999987 


Q ss_pred             -hhhcccCCCCC
Q 028201          175 -ASQLSAAPKGK  185 (212)
Q Consensus       175 -~~~l~~ap~~~  185 (212)
                       ...||++|++.
T Consensus       159 ~~~~lp~~P~~~  170 (171)
T PF03357_consen  159 EKQQLPSVPSTE  170 (171)
T ss_dssp             -SS-SS---HH-
T ss_pred             ccccCCcCCCCC
Confidence             78888888764

The family contains human CHMP1. CHMP1 (CHromatin Modifying Protein; CHarged Multivesicular body Protein), is encoded by an alternative open reading frame in the PRSM1 gene [] and is conserved in both complex and simple eukaryotes. CHMP1 contains a predicted bipartite nuclear localisation signal and distributes as distinct forms to the cytoplasm and the nuclear matrix in all cell lines tested. Human CHMP1 is strongly implicated in multivesicular body formation. A multivesicular body is a vesicle-filled endosome that targets proteins to the interior of lysosomes. Immunocytochemistry and biochemical fractionation localise CHMP1 to early endosomes and CHMP1 physically interacts with SKD1/VPS4, a highly conserved protein directly linked to multivesicular body sorting in yeast. Similar to the action of a mutant SKD1 protein, over expression of a fusion derivative of human CHMP1 dilates endosomal compartments and disrupts the normal distribution of several endosomal markers. Genetic studies in Saccharomyces cerevisiae (Baker's yeast) further support a conserved role of CHMP1 in vesicle trafficking. Deletion of CHM1, the budding yeast homologue of CHMP1, results in defective sorting of carboxypeptidases S and Y and produces abnormal, multi-lamellar prevacuolar compartments. This phenotype classifies CHM1 as a member of the class E vacuolar protein sorting genes []. ; GO: 0015031 protein transport; PDB: 2V6X_B 2W2U_D 2GD5_D 3FRT_B 3FRV_A 4ABM_D 3EAB_H 3HTU_D.

>PTZ00464 SNF-7-like protein; Provisional

Probab=99.93  E-value=9.4e-24  Score=173.77  Aligned_cols=188  Identities=20%  Similarity=0.249  Sum_probs=151.5

Q ss_pred             CC-CCCCCC-ChHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHH----H
Q 028201            1 MN-IFSKKP-NPKEALRESKREMQHATRGMEKEIGALQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLRQQIA----N   74 (212)
Q Consensus         1 m~-~fg~~~-~pke~~r~~~~~lr~~~r~Ldre~~kle~~e~kl~~~ik~a~kkg~~~~ari~Ak~lvr~rk~~~----~   74 (212)
                      |+ |||+++ .|+..+++++..+|.....|++.+.+|+.+..+.+..+++....+ ..+.|..|..++|.||.++    +
T Consensus         1 M~rlFG~~k~~p~~t~~d~~~~l~~r~~~l~kKi~~ld~E~~~ak~~~k~~~~~~-~~~~K~~Al~~LK~KK~~E~ql~~   79 (211)
T PTZ00464          1 MNRLFGKKNKTPKPTLEDASKRIGGRSEVVDARINKIDAELMKLKEQIQRTRGMT-QSRHKQRAMQLLQQKRMYQNQQDM   79 (211)
T ss_pred             CccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchh-hhHHHHHHHHHHHHHHHHHHHHHH
Confidence            76 999864 688899999999999999999999999999888888877654422 2346889999999999776    4


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhHHHHHhhhhhhcccchh
Q 028201           75 LQGSRAQIRGIATHTQAMHAHSSVAVGMKGASKAMAAMNKQMEPAKQAKVMREFQKQSAQMDMTTEMMSDTIDDALDNDE  154 (212)
Q Consensus        75 l~~~~aql~~v~~~l~~a~~~~~~~~am~~~~~~mk~~n~~~~~~~i~~~m~~f~~e~~~~~~~~e~m~d~~~~~~~~~~  154 (212)
                      +.....+|+.+.+.|+++..+..+..+|+.++++|+.+|+.|++++|..+|+++.++++..+.|+++++.+++..  ++.
T Consensus        80 l~~q~~nleq~~~~ie~a~~~~~vv~amk~g~kaLK~~~k~i~id~Vd~l~Dei~E~~e~~~EI~e~Ls~~~~~~--~~~  157 (211)
T PTZ00464         80 MMQQQFNMDQLQFTTESVKDTKVQVDAMKQAAKTLKKQFKKLNVDKVEDLQDELADLYEDTQEIQEIMGRAYDVP--DDI  157 (211)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC--CCC
Confidence            667888888888999999999999999999999999999999999999999999999999999999999876421  122


Q ss_pred             hHHHHHHHHHHHHHHh----cchhhhhcccCCCCCCCCCCc
Q 028201          155 AEEETEELTNQVLDEI----GVDVASQLSAAPKGKIASKNT  191 (212)
Q Consensus       155 ~eee~d~~~~~v~~E~----~~~~~~~l~~ap~~~~~~~~~  191 (212)
                      +|+|++++++.+..|.    ........|++|+..+|..+.
T Consensus       158 DEdELe~ELe~Le~e~~~e~~~~~l~~~~~~p~~~~~~~~~  198 (211)
T PTZ00464        158 DEDEMLGELDALDFDMEKEADASYLADALAVPGTKLPDVPT  198 (211)
T ss_pred             CHHHHHHHHHHHHHHHhccccchhhhccccCCCCCCCCCCC
Confidence            3455555555555554    323345677888887765543

>KOG1656 consensus Protein involved in glucose derepression and pre-vacuolar endosome protein sorting [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.87  E-value=2.9e-20  Score=148.79  Aligned_cols=179  Identities=23%  Similarity=0.325  Sum_probs=134.6

Q ss_pred             CCCCC-----CChHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHH-HH
Q 028201            3 IFSKK-----PNPKEALRESKREMQHATRGMEKEIGALQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLRQQIAN-LQ   76 (212)
Q Consensus         3 ~fg~~-----~~pke~~r~~~~~lr~~~r~Ldre~~kle~~e~kl~~~ik~a~kkg~~~~ari~Ak~lvr~rk~~~~-l~   76 (212)
                      |||+.     ++|++    ++-.||.+...|   ++|-+.-++++..++...+++.-.. .|..|.++++++|.+++ |.
T Consensus         7 ~FG~~k~~~~~t~~e----aI~kLrEteemL---~KKqe~Le~ki~~e~e~~A~k~~tk-NKR~AlqaLkrKK~~E~qL~   78 (221)
T KOG1656|consen    7 LFGGMKQEAKPTPQE----AIQKLRETEEML---EKKQEFLEKKIEQEVENNARKYGTK-NKRMALQALKRKKRYEKQLA   78 (221)
T ss_pred             HhCcccccCCCChHH----HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHH
Confidence            78873     45554    455567776666   4556666667777766644443333 46688898988887765 55


Q ss_pred             HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhHHHHHhhhhh--hccc
Q 028201           77 GSRAQIRGIATH---TQAMHAHSSVAVGMKGASKAMAAMNKQMEPAKQAKVMREFQKQSAQMDMTTEMMSDTID--DALD  151 (212)
Q Consensus        77 ~~~aql~~v~~~---l~~a~~~~~~~~am~~~~~~mk~~n~~~~~~~i~~~m~~f~~e~~~~~~~~e~m~d~~~--~~~~  151 (212)
                      +...-|.++..|   |++|+.+..+.++|+.++++||.+++.||+++|+.+|+++.+|.+.+..|+++|+.++.  ..+|
T Consensus        79 qidG~l~tie~Qr~alEnA~~n~Evl~~m~~~A~AmK~~h~~mDiDkVdd~MdeI~eQqe~a~eIseAiS~Pvg~~a~~D  158 (221)
T KOG1656|consen   79 QIDGTLSTIEFQREALENANTNTEVLDAMGSAAKAMKAAHKNMDIDKVDDLMDEIAEQQEVAEEISEAISAPVGFGADFD  158 (221)
T ss_pred             HHhhHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHhCccccccccC
Confidence            777888888777   56789999999999999999999999999999999999999999999999999999885  3366


Q ss_pred             chhhHHHHHHHHHHHHHHhcchhh---hhcccCCCCCCCCC
Q 028201          152 NDEAEEETEELTNQVLDEIGVDVA---SQLSAAPKGKIASK  189 (212)
Q Consensus       152 ~~~~eee~d~~~~~v~~E~~~~~~---~~l~~ap~~~~~~~  189 (212)
                      +++...|+|+|-+..++.-.+++.   ..||.+|++..|..
T Consensus       159 EDEL~~ELdeLeqeeld~~ll~~~~p~v~LP~vPs~~lPa~  199 (221)
T KOG1656|consen  159 EDELMAELDELEQEELDKELLDIRAPPVPLPDVPSIALPAK  199 (221)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCccccCcc
Confidence            666666666666666666544433   25778887776643

>PTZ00446 vacuolar sorting protein SNF7-like; Provisional

Probab=99.87  E-value=6e-20  Score=148.47  Aligned_cols=161  Identities=17%  Similarity=0.268  Sum_probs=129.0

Q ss_pred             CC-CCCCC-CCh---------HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 028201            1 MN-IFSKK-PNP---------KEALRESKREMQHATRGMEKEIGALQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLR   69 (212)
Q Consensus         1 m~-~fg~~-~~p---------ke~~r~~~~~lr~~~r~Ldre~~kle~~e~kl~~~ik~a~kkg~~~~ari~Ak~lvr~r   69 (212)
                      |+ |||++ +.|         ++.+.+++..||.+...|++-..+|+....++...+|+++++|+...    |..++|.|
T Consensus         1 m~~~fgk~~~~~~~~~~~~~~~~~~~~AIl~Lk~~~~~L~krq~~Le~kIe~e~~~Ak~~~~~~kk~~----Al~~LkrK   76 (191)
T PTZ00446          1 MRFWFGKKKNSSECSDNKKKNNDEIYKAILKNREAIDALEKKQVQVEKKIKQLEIEAKQKVEQNQMSN----AKILLKRK   76 (191)
T ss_pred             CccccCCCCCCCcchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHH----HHHHHHHH
Confidence            76 99975 344         23588999999999999999999999999999999999999998544    67789999


Q ss_pred             HHHHH-HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhHHHHHhhh
Q 028201           70 QQIAN-LQGSRAQIRGI---ATHTQAMHAHSSVAVGMKGASKAMAAMNKQMEPAKQAKVMREFQKQSAQMDMTTEMMSDT  145 (212)
Q Consensus        70 k~~~~-l~~~~aql~~v---~~~l~~a~~~~~~~~am~~~~~~mk~~n~~~~~~~i~~~m~~f~~e~~~~~~~~e~m~d~  145 (212)
                      |.+++ +.++.+++..+   .+.|+++..+..+..+|+.++++|+.+|+.|++++|+.+|+++.++++..+.|+++++.+
T Consensus        77 K~~E~ql~q~~~ql~nLEq~~~~iE~a~~~~ev~~aLk~g~~aLK~~~k~~~idkVd~lmDei~E~~e~~~EIseaLs~~  156 (191)
T PTZ00446         77 KLYEQEIENILNNRLTLEDNMINLENMHLHKIAVNALSYAANTHKKLNNEINTQKVEKIIDTIQENKDIQEEINQALSFN  156 (191)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            98875 33555555554   566788999999999999999999999999999999999999999999999999999976


Q ss_pred             hhhcccchhhHHHHHHHHHH
Q 028201          146 IDDALDNDEAEEETEELTNQ  165 (212)
Q Consensus       146 ~~~~~~~~~~eee~d~~~~~  165 (212)
                      +.+..|+++.++|++++.++
T Consensus       157 ~~~~~DEdELe~ELe~Le~e  176 (191)
T PTZ00446        157 LLNNVDDDEIDKELDLLKEQ  176 (191)
T ss_pred             CCCCCCHHHHHHHHHHHHHH
Confidence            43333444444444444443

>KOG2910 consensus Uncharacterized conserved protein predicted to be involved in protein sorting [General function prediction only]

Probab=99.81  E-value=2.9e-17  Score=130.41  Aligned_cols=175  Identities=13%  Similarity=0.228  Sum_probs=144.8

Q ss_pred             CC-CCCCCCChHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHH-HH
Q 028201            1 MN-IFSKKPNPKEALRESKREMQHATRGMEKEIGALQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLRQQIANLQ-GS   78 (212)
Q Consensus         1 m~-~fg~~~~pke~~r~~~~~lr~~~r~Ldre~~kle~~e~kl~~~ik~a~kkg~~~~ari~Ak~lvr~rk~~~~l~-~~   78 (212)
                      || +||+ +.+---...++..|+.+-+.|.+-.+++++.....+..+|+|++.|....|+.+    ++++++++.|+ ++
T Consensus         1 MG~lfsK-~~~Itd~DrAIL~lK~QRdkl~qyqkR~e~~le~Er~~Ar~lird~rKdrAlll----LKkKryQE~Ll~qt   75 (209)
T KOG2910|consen    1 MGNLFSK-KSRITDQDRAILSLKTQRDKLKQYQKRLEKQLEAERQLARDLIRDGRKDRALLL----LKKKRYQEELLTQT   75 (209)
T ss_pred             CCccccC-CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHH----HHHHHHHHHHHHHH
Confidence            76 8997 444455677888999999999999999999999999999999999998777755    99999999877 67


Q ss_pred             HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhHHHHHhhhhhhcccchhh
Q 028201           79 RAQIRGIATH---TQAMHAHSSVAVGMKGASKAMAAMNKQMEPAKQAKVMREFQKQSAQMDMTTEMMSDTIDDALDNDEA  155 (212)
Q Consensus        79 ~aql~~v~~~---l~~a~~~~~~~~am~~~~~~mk~~n~~~~~~~i~~~m~~f~~e~~~~~~~~e~m~d~~~~~~~~~~~  155 (212)
                      ..||..++..   |+-......++.+++.++.+++++|+.|+++.|+.+|++..+.+++.+.|++|+++.|...     +
T Consensus        76 ~~qL~nlEqmvsdiEft~vqk~V~~gLk~GN~~lkkl~~~~~ideV~rimddt~ea~~YQ~Ein~~L~~~ls~~-----d  150 (209)
T KOG2910|consen   76 DNQLINLEQMVSDIEFTQVQKKVMEGLKQGNEALKKLQQEFDIDEVDRIMDDTQEAIEYQDEINAILSGSLSAE-----D  150 (209)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccc-----c
Confidence            7777777655   4557778899999999999999999999999999999999999999999999999998852     3


Q ss_pred             HHHHHHHHHHHHHHhcchhhhhcccCCCCCCC
Q 028201          156 EEETEELTNQVLDEIGVDVASQLSAAPKGKIA  187 (212)
Q Consensus       156 eee~d~~~~~v~~E~~~~~~~~l~~ap~~~~~  187 (212)
                      ++++.++++.+..|...+  .++|.+|+..++
T Consensus       151 Eddi~~EldaLese~~~e--~e~PevPs~ep~  180 (209)
T KOG2910|consen  151 EDDILAELDALESELEVE--AELPEVPSTEPE  180 (209)
T ss_pred             HHHHHHHHHHHHHHhhhh--hhcCCCCCCCCC
Confidence            455555666655555433  678888887543

>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.79  E-value=3.7e-17  Score=130.29  Aligned_cols=169  Identities=19%  Similarity=0.281  Sum_probs=154.3

Q ss_pred             CC-CCCCC--CChHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHH----
Q 028201            1 MN-IFSKK--PNPKEALRESKREMQHATRGMEKEIGALQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLRQQIA----   73 (212)
Q Consensus         1 m~-~fg~~--~~pke~~r~~~~~lr~~~r~Ldre~~kle~~e~kl~~~ik~a~kkg~~~~ari~Ak~lvr~rk~~~----   73 (212)
                      |+ |||++  +.|...+.+|+-.+.+..-.++..|.+|+.+..+++.+|++.-...-..+.|..|-.+++.||+|+    
T Consensus         1 MnRiFG~~k~k~p~psL~dai~~v~~r~dSve~KIskLDaeL~k~~~Qi~k~R~gpaq~~~KqrAlrVLkQKK~yE~q~d   80 (218)
T KOG1655|consen    1 MNRIFGRGKPKEPPPSLQDAIDSVNKRSDSVEKKISKLDAELCKYKDQIKKTRPGPAQNALKQRALRVLKQKKMYENQKD   80 (218)
T ss_pred             CcccccCCCCCCCChhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHH
Confidence            66 99986  468999999999999999999999999999999999999999777777899999999999999886    


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhHHHHHhhhhhhcccch
Q 028201           74 NLQGSRAQIRGIATHTQAMHAHSSVAVGMKGASKAMAAMNKQMEPAKQAKVMREFQKQSAQMDMTTEMMSDTIDDALDND  153 (212)
Q Consensus        74 ~l~~~~aql~~v~~~l~~a~~~~~~~~am~~~~~~mk~~n~~~~~~~i~~~m~~f~~e~~~~~~~~e~m~d~~~~~~~~~  153 (212)
                      .|+...+.|+.+.+..++...+..++.+|+.+++.|+...+.+++++|...-+++..-|+..++|+|.++..++..   +
T Consensus        81 ~L~~QsfNMeQa~~t~e~LKdtq~Tv~AmK~~~k~mK~~ykkvnId~IedlQDem~Dlmd~a~EiQE~Lgr~y~~p---e  157 (218)
T KOG1655|consen   81 SLDQQSFNMEQANFTAESLKDTQATVAAMKDTNKEMKKQYKKVNIDKIEDLQDEMEDLMDQADEIQEVLGRNYNTP---D  157 (218)
T ss_pred             HHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC---C
Confidence            5888999999999999999999999999999999999999999999999999999999999999999999988763   2


Q ss_pred             hhHHHHHHHHHHHHHHhcc
Q 028201          154 EAEEETEELTNQVLDEIGV  172 (212)
Q Consensus       154 ~~eee~d~~~~~v~~E~~~  172 (212)
                      +++++++.+++.+.+|...
T Consensus       158 ide~dL~aELdaL~~E~d~  176 (218)
T KOG1655|consen  158 IDEADLDAELDALGQELDM  176 (218)
T ss_pred             cCHHHHHHHHHHHHhHhhc
Confidence            5678888888888777643

>COG5491 VPS24 Conserved protein implicated in secretion [Cell motility and secretion]

Probab=99.42  E-value=2.5e-11  Score=99.01  Aligned_cols=177  Identities=23%  Similarity=0.300  Sum_probs=120.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHc--CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028201           28 MEKEIGALQQEEKKLVAEIKRTAKT--GNEGATKILARQLIRLRQQIANLQGSRAQIRGIATHTQAMHAHSSVAVGMKGA  105 (212)
Q Consensus        28 Ldre~~kle~~e~kl~~~ik~a~kk--g~~~~ari~Ak~lvr~rk~~~~l~~~~aql~~v~~~l~~a~~~~~~~~am~~~  105 (212)
                      +++++.++-.+.+...+....+.++  ......+++++.+++.++++.+|...+++|.++.+.+....++..+++-|.  
T Consensus         5 ~~~~~~k~~~~~k~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~~~~srL~~~~sRLqs~~~~~~e~~~m~~v~~~~~--   82 (204)
T COG5491           5 LERQAKKLVRELKQEAKKGQVLLNEIAKKAPNRRRLAEELYKLRKARSRLDASISRLQSLDTMLFEKVVMRQVSGDMA--   82 (204)
T ss_pred             HHHHHHHhhhhhhhHhHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH--
Confidence            6667777777766666655554442  255678889999999888888888887777777776666655555555555  


Q ss_pred             HHHHHHHHhcCC-HHHHHHHHHHHHHHHHHhhhHH---HHHhhhhhhcc--cchhhHHHHHHHHHHHHHHhcchhhhhcc
Q 028201          106 SKAMAAMNKQME-PAKQAKVMREFQKQSAQMDMTT---EMMSDTIDDAL--DNDEAEEETEELTNQVLDEIGVDVASQLS  179 (212)
Q Consensus       106 ~~~mk~~n~~~~-~~~i~~~m~~f~~e~~~~~~~~---e~m~d~~~~~~--~~~~~eee~d~~~~~v~~E~~~~~~~~l~  179 (212)
                           .++..|| ++.|..+|+.|..++..++...   |.|.+.++...  +..++.+++|++++.|++|+|++......
T Consensus        83 -----~a~~~mnel~~i~ri~~~~et~~~~mE~~~~~le~m~e~~~v~~~~~v~~~l~~lde~v~~v~pEi~lel~~~~~  157 (204)
T COG5491          83 -----KAAMYMNELESIRRIMQLFETQFLALELVQLRLETMDELMDVVVGDPVLEDLEELDELVNKVLPEIGLELDESEQ  157 (204)
T ss_pred             -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhhhhHHHHHHHHHhhchhhhhhhhhHhh
Confidence                 4455555 6778888888888887777777   66666555544  34567899999999999999999885444


Q ss_pred             cCCCC-----CCCCC--C-c----cCCCCccHHHHHHHHHhhcC
Q 028201          180 AAPKG-----KIASK--N-T----EDASSSGIDELEKRLAALRN  211 (212)
Q Consensus       180 ~ap~~-----~~~~~--~-~----~~~~~~~~~~l~~RL~aLr~  211 (212)
                      ++|..     ..+..  + +    .+.+...++.+..||..|++
T Consensus       158 ~~~~~~~~~~~~~a~~~~ea~~ileea~~~aE~~l~e~~~~L~~  201 (204)
T COG5491         158 SLPANVVENGSVPAAVSPEARKILEEAEKIAEDRLQERLRELPA  201 (204)
T ss_pred             cchhhhhcccccccccChhhhhhHHHHHhhHHHHHHHHHHhccc
Confidence            44431     11110  0 0    01112347899999999985

>KOG2911 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.35  E-value=1.9e-10  Score=102.13  Aligned_cols=171  Identities=15%  Similarity=0.165  Sum_probs=144.2

Q ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028201           12 EALRESKREMQHATRGMEKEIGALQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLRQQIANLQGSRAQIRGIATHTQA   91 (212)
Q Consensus        12 e~~r~~~~~lr~~~r~Ldre~~kle~~e~kl~~~ik~a~kkg~~~~ari~Ak~lvr~rk~~~~l~~~~aql~~v~~~l~~   91 (212)
                      -.+.-....|+.+.-.|.+++..|+.+-++...+++.+.+.|....|..|++.--+.-|-.+++.....+|++|-.+|.+
T Consensus       229 t~~D~~V~~L~~~~~~L~kqie~L~qeie~~~~~~r~~~k~g~K~iA~~ylr~rk~~eK~~er~~~~l~~l~~vl~~Id~  308 (439)
T KOG2911|consen  229 TEIDGSVADLIQARAKLAKQIEFLEQEIEKSKEKLRQALKEGKKQIAITYLRARKLLEKDLERKVSSLNNLETVLSQIDN  308 (439)
T ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh
Confidence            34566788899999999999999999999999999999999999888888777777777778888899999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhhHHHHHhhhhhhcccchhhHHHHHHHHHHHHHHh
Q 028201           92 MHAHSSVAVGMKGASKAMAAMNK-QMEPAKQAKVMREFQKQSAQMDMTTEMMSDTIDDALDNDEAEEETEELTNQVLDEI  170 (212)
Q Consensus        92 a~~~~~~~~am~~~~~~mk~~n~-~~~~~~i~~~m~~f~~e~~~~~~~~e~m~d~~~~~~~~~~~eee~d~~~~~v~~E~  170 (212)
                      +.++.-+..+++.++.+||.++. ...+++|..+|+++.+-++....++++|+...-...|  .+|++++.+++.++.+.
T Consensus       309 s~~nkvvl~AyksGs~alK~il~~~~s~ekVed~Ldev~et~d~~~EV~~~la~~~~~~~d--~~de~lEkEL~~L~~D~  386 (439)
T KOG2911|consen  309 SQTNKVVLQAYKSGSEALKAILAQGGSTEKVEDVLDEVNETLDRQEEVEDALASYNVNNID--FEDEDLEKELEDLEADE  386 (439)
T ss_pred             hcccHHHHHHHHHhHHHHHHHHhccCChhhHHHHHHHHHHHHhhHHHHHHHHhcCCCCCCc--cchHHHHHHHHHHHhcc
Confidence            99999999999999999999999 5688999999999999999999999999987655333  34677888888777765


Q ss_pred             cchhhhhcccCCCC
Q 028201          171 GVDVASQLSAAPKG  184 (212)
Q Consensus       171 ~~~~~~~l~~ap~~  184 (212)
                      .-.-.-.+|..|..
T Consensus       387 ~k~e~~~lp~~~~s  400 (439)
T KOG2911|consen  387 KKNEDLVLPLNSVS  400 (439)
T ss_pred             ccCCccCCCCCCch
Confidence            44323334544443

>PRK10698 phage shock protein PspA; Provisional

Probab=98.40  E-value=7.1e-05  Score=62.50  Aligned_cols=126  Identities=13%  Similarity=0.239  Sum_probs=88.8

Q ss_pred             CChHHHHHHHHHHHHH--------------HhhhHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHH-------HHHHHH
Q 028201            8 PNPKEALRESKREMQH--------------ATRGMEKEIGALQQEEKKLVAEIKRTAKTGNEGATKI-------LARQLI   66 (212)
Q Consensus         8 ~~pke~~r~~~~~lr~--------------~~r~Ldre~~kle~~e~kl~~~ik~a~kkg~~~~ari-------~Ak~lv   66 (212)
                      -||...++...++++.              ..+.++|++..++....+...++..|+.+|+-+-||.       |+..+-
T Consensus        23 EDP~k~l~q~i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~kA~~Al~~G~EdLAr~AL~~K~~~~~~~~  102 (222)
T PRK10698         23 EDPQKLVRLMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQEKAELALRKEKEDLARAALIEKQKLTDLIA  102 (222)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence            5788788777777764              3566888888888888888999999999999998887       777777


Q ss_pred             HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 028201           67 RLRQQIAN----LQGSRAQIRGIATHTQAMHAHSSVAVGMKGASKAMAAMNKQMEPAKQAKVMREFQKQSA  133 (212)
Q Consensus        67 r~rk~~~~----l~~~~aql~~v~~~l~~a~~~~~~~~am~~~~~~mk~~n~~~~~~~i~~~m~~f~~e~~  133 (212)
                      ..+.++..    ...+..++..+...|..+.+-..+.-+=..++.+...+|..+.-......|..|..--+
T Consensus       103 ~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a~~~~~~~~~~~~~~~a~~~f~rmE~  173 (222)
T PRK10698        103 TLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAASSSRDVRRQLDSGKLDEAMARFESFER  173 (222)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence            76665543    33456666666777777777666666666666776777666554444555555444333

>COG5491 VPS24 Conserved protein implicated in secretion [Cell motility and secretion]

Probab=98.26  E-value=9.5e-05  Score=60.66  Aligned_cols=136  Identities=22%  Similarity=0.265  Sum_probs=83.6

Q ss_pred             HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028201           35 LQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLRQQIA--NLQGSRAQIRGIATHTQAMHAHSSVAVGMKGASKAMAAM  112 (212)
Q Consensus        35 le~~e~kl~~~ik~a~kkg~~~~ari~Ak~lvr~rk~~~--~l~~~~aql~~v~~~l~~a~~~~~~~~am~~~~~~mk~~  112 (212)
                      +++..++.....|...++|.....++-.+.-+++|....  ++..+.++|+.+.++|++...+....-+|.       .+
T Consensus         5 ~~~~~~k~~~~~k~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~~~~srL~~~~sRLqs~~~~~~e~~~m~-------~v   77 (204)
T COG5491           5 LERQAKKLVRELKQEAKKGQVLLNEIAKKAPNRRRLAEELYKLRKARSRLDASISRLQSLDTMLFEKVVMR-------QV   77 (204)
T ss_pred             HHHHHHHhhhhhhhHhHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HH
Confidence            677778888888888888877666655555666666655  777899999999999988877665554444       44


Q ss_pred             HhcCCHHHHHHHHHH------HHHHHHHhhhHHHHHh---hhhhhcccchh--hHHHHHHHHHHHHHHhcchhhhhcc
Q 028201          113 NKQMEPAKQAKVMRE------FQKQSAQMDMTTEMMS---DTIDDALDNDE--AEEETEELTNQVLDEIGVDVASQLS  179 (212)
Q Consensus       113 n~~~~~~~i~~~m~~------f~~e~~~~~~~~e~m~---d~~~~~~~~~~--~eee~d~~~~~v~~E~~~~~~~~l~  179 (212)
                      .+.  +.+-..+|++      +.+.++.+...=|.+.   +.+....+...  +..+..+.++..+..+.-+++-.|.
T Consensus        78 ~~~--~~~a~~~mnel~~i~ri~~~~et~~~~mE~~~~~le~m~e~~~v~~~~~v~~~l~~lde~v~~v~pEi~lel~  153 (204)
T COG5491          78 SGD--MAKAAMYMNELESIRRIMQLFETQFLALELVQLRLETMDELMDVVVGDPVLEDLEELDELVNKVLPEIGLELD  153 (204)
T ss_pred             hcc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhhhhHHHHHHHHHhhchhhhhhhh
Confidence            444  4444455553      4444555554444444   34444334333  3445555566655555555554443

>PTZ00464 SNF-7-like protein; Provisional

Probab=98.13  E-value=0.0017  Score=53.75  Aligned_cols=148  Identities=14%  Similarity=0.199  Sum_probs=105.4

Q ss_pred             CCCChHHHHHH---HHHHHHHHhhhHHHHHHHHHHHHHHH--------HHHHHHHHHcCChHHHHHHHHHHHHHHHHHHH
Q 028201            6 KKPNPKEALRE---SKREMQHATRGMEKEIGALQQEEKKL--------VAEIKRTAKTGNEGATKILARQLIRLRQQIAN   74 (212)
Q Consensus         6 ~~~~pke~~r~---~~~~lr~~~r~Ldre~~kle~~e~kl--------~~~ik~a~kkg~~~~ari~Ak~lvr~rk~~~~   74 (212)
                      .++++.+.+..   -...|.+.+..|++++.++...-++.        +..+..|+++.     |.|=+++-+.-.+..+
T Consensus        12 p~~t~~d~~~~l~~r~~~l~kKi~~ld~E~~~ak~~~k~~~~~~~~~~K~~Al~~LK~K-----K~~E~ql~~l~~q~~n   86 (211)
T PTZ00464         12 PKPTLEDASKRIGGRSEVVDARINKIDAELMKLKEQIQRTRGMTQSRHKQRAMQLLQQK-----RMYQNQQDMMMQQQFN   86 (211)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHH
Confidence            45777766544   44555666777888877776655544        55666677655     6787888888899999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh-hhHHHHHh--hhhhhccc
Q 028201           75 LQGSRAQIRGIATHTQAMHAHSSVAVGMKGASKAMAAMNKQMEPAKQAKVMREFQKQSAQM-DMTTEMMS--DTIDDALD  151 (212)
Q Consensus        75 l~~~~aql~~v~~~l~~a~~~~~~~~am~~~~~~mk~~n~~~~~~~i~~~m~~f~~e~~~~-~~~~e~m~--d~~~~~~~  151 (212)
                      |..+...++..........++..-+.+|++..+-| .+-   +++.+..-|.+........ ++++.-+.  +.+    |
T Consensus        87 leq~~~~ie~a~~~~~vv~amk~g~kaLK~~~k~i-~id---~Vd~l~Dei~E~~e~~~EI~e~Ls~~~~~~~~~----D  158 (211)
T PTZ00464         87 MDQLQFTTESVKDTKVQVDAMKQAAKTLKKQFKKL-NVD---KVEDLQDELADLYEDTQEIQEIMGRAYDVPDDI----D  158 (211)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CHH---HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCC----C
Confidence            99999999999999999999999999999988877 344   3688766666544444444 77776553  223    3


Q ss_pred             chhhHHHHHHHHHHH
Q 028201          152 NDEAEEETEELTNQV  166 (212)
Q Consensus       152 ~~~~eee~d~~~~~v  166 (212)
                      +++.++|++++..++
T Consensus       159 EdELe~ELe~Le~e~  173 (211)
T PTZ00464        159 EDEMLGELDALDFDM  173 (211)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            456778888877764

>TIGR02977 phageshock_pspA phage shock protein A

Probab=98.03  E-value=0.0021  Score=53.45  Aligned_cols=127  Identities=13%  Similarity=0.240  Sum_probs=74.9

Q ss_pred             CChHHHHHHHHHHHHHHh--------------hhHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH-----
Q 028201            8 PNPKEALRESKREMQHAT--------------RGMEKEIGALQQEEKKLVAEIKRTAKTGNEGATKILARQLIRL-----   68 (212)
Q Consensus         8 ~~pke~~r~~~~~lr~~~--------------r~Ldre~~kle~~e~kl~~~ik~a~kkg~~~~ari~Ak~lvr~-----   68 (212)
                      -||...++...++++..+              +.+++++..++....+...+++.|+++|+-+-||-.+..-...     
T Consensus        23 EDP~~~l~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~G~EdLAr~Al~~k~~~~~~~~  102 (219)
T TIGR02977        23 EDPEKMIRLIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELALSKGREDLARAALIEKQKAQELAE  102 (219)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence            578878887777776544              5567778888888888899999999999988666442221111     


Q ss_pred             --HHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 028201           69 --RQQIA----NLQGSRAQIRGIATHTQAMHAHSSVAVGMKGASKAMAAMNKQMEPAKQAKVMREFQKQSAQ  134 (212)
Q Consensus        69 --rk~~~----~l~~~~aql~~v~~~l~~a~~~~~~~~am~~~~~~mk~~n~~~~~~~i~~~m~~f~~e~~~  134 (212)
                        ..++.    ....+..+|..+..++..+.+...+..+=..++.+-..+|..+.--.+...+..|++-.++
T Consensus       103 ~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~A~a~~~~~~~~~~~~~~~a~~~fer~e~k  174 (219)
T TIGR02977       103 ALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQAASSRLDVRRQLDSGRSDEAMARFEQYERR  174 (219)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHH
Confidence              11111    2224444555555555556555554444444555555555554333344555555444343

Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.

>PTZ00446 vacuolar sorting protein SNF7-like; Provisional

Probab=97.83  E-value=0.006  Score=49.75  Aligned_cols=142  Identities=12%  Similarity=0.051  Sum_probs=95.2

Q ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028201           21 MQHATRGMEKEIGALQQEEKKLVAEIKRTAKTGNEGATKILAR-----QLIRLRQQIANLQGSRAQIRGIATHTQAMHAH   95 (212)
Q Consensus        21 lr~~~r~Ldre~~kle~~e~kl~~~ik~a~kkg~~~~ari~Ak-----~lvr~rk~~~~l~~~~aql~~v~~~l~~a~~~   95 (212)
                      ...++-.|..++..|++.+.++..+|.....     .||.+.+     .+++.=+....|.....++++..+.|+.+..+
T Consensus        25 ~~~AIl~Lk~~~~~L~krq~~Le~kIe~e~~-----~Ak~~~~~~kk~~Al~~LkrKK~~E~ql~q~~~ql~nLEq~~~~   99 (191)
T PTZ00446         25 IYKAILKNREAIDALEKKQVQVEKKIKQLEI-----EAKQKVEQNQMSNAKILLKRKKLYEQEIENILNNRLTLEDNMIN   99 (191)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6788999999999999999999999876542     1232211     12223333444556667777777777777777


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCHHHHHHHH-----HHHHHHHHHhhhHHHHHhhhhhhcccchhhHHHHHHHHHHHHHH
Q 028201           96 SSVAVGMKGASKAMAAMNKQMEPAKQAKVM-----REFQKQSAQMDMTTEMMSDTIDDALDNDEAEEETEELTNQVLDE  169 (212)
Q Consensus        96 ~~~~~am~~~~~~mk~~n~~~~~~~i~~~m-----~~f~~e~~~~~~~~e~m~d~~~~~~~~~~~eee~d~~~~~v~~E  169 (212)
                      ...+..=..+..+|+..++.  +..+.+-|     +++..++...-..++=|++++.....++.+|+|++++++.+..|
T Consensus       100 iE~a~~~~ev~~aLk~g~~a--LK~~~k~~~idkVd~lmDei~E~~e~~~EIseaLs~~~~~~~DEdELe~ELe~Le~e  176 (191)
T PTZ00446        100 LENMHLHKIAVNALSYAANT--HKKLNNEINTQKVEKIIDTIQENKDIQEEINQALSFNLLNNVDDDEIDKELDLLKEQ  176 (191)
T ss_pred             HHHHHHHHHHHHHHHHHHHH--HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHH
Confidence            77776667777888888887  45555432     33444444444455566777876544567899999999998875

>KOG3230 consensus Vacuolar assembly/sorting protein DID4 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.63  E-value=0.006  Score=49.45  Aligned_cols=154  Identities=16%  Similarity=0.244  Sum_probs=86.9

Q ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH-HHH--cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028201           11 KEALRESKREMQHATRGMEKEIGALQQEEKKLVAEIKR-TAK--TGNEGATKILARQLIRLRQQIANLQGSRAQIRGIAT   87 (212)
Q Consensus        11 ke~~r~~~~~lr~~~r~Ldre~~kle~~e~kl~~~ik~-a~k--kg~~~~ari~Ak~lvr~rk~~~~l~~~~aql~~v~~   87 (212)
                      +-.+..+.|.|-++...|+-|-++|=.+-++.-+.=-. |.|  ..+.-..|.|.+.+...|.   ++...+-++.++.+
T Consensus        18 qRal~~a~ReleRer~~le~qeKklvaeIKk~AK~gq~~A~KimAkdLvRtR~~i~kf~~~ka---qiqaVSl~iQtlks   94 (224)
T KOG3230|consen   18 QRALNKATRELERERQKLELQEKKLVAEIKKTAKQGQMDAVKIMAKDLVRTRRYIKKFQNMKA---QIQAVSLRIQTLKS   94 (224)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHh
Confidence            34455666777777777777777776666654221110 111  1223345556555555554   34455556666666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH-hhhHHHHHhhhhhhcccchhhHHHHHHHHHHH
Q 028201           88 HTQAMHAHSSVAVGMKGASKAMAAMNKQMEPAKQAKVMREFQKQSAQ-MDMTTEMMSDTIDDALDNDEAEEETEELTNQV  166 (212)
Q Consensus        88 ~l~~a~~~~~~~~am~~~~~~mk~~n~~~~~~~i~~~m~~f~~e~~~-~~~~~e~m~d~~~~~~~~~~~eee~d~~~~~v  166 (212)
                      .-..+.+|.-++++|...++-|.--.    +.+|-.-.+.-++.|+- .+++.+.|+|+|++.-++++-|+-+...++.+
T Consensus        95 s~sma~aMkGaTkam~~MNrqmnlpq----~qkIm~eFekQse~Mdm~~Emm~daIDdal~~~edEEEtd~lvnqVLDEi  170 (224)
T KOG3230|consen   95 STSMAQAMKGATKAMAGMNRQMNLPQ----IQKIMQEFEKQSEIMDMKEEMMDDAIDDALGDDEDEEETDDLVNQVLDEI  170 (224)
T ss_pred             HHHHHHHHHHHHHHHHHHhhccChHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHH
Confidence            66667777777777776665553222    34444444443444433 25667777777766656666666777777766


Q ss_pred             HHHhc
Q 028201          167 LDEIG  171 (212)
Q Consensus       167 ~~E~~  171 (212)
                      -=.++
T Consensus       171 Gvdl~  175 (224)
T KOG3230|consen  171 GVDLA  175 (224)
T ss_pred             cccHH
Confidence            55444

>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription

Probab=97.45  E-value=0.047  Score=45.21  Aligned_cols=137  Identities=14%  Similarity=0.284  Sum_probs=80.1

Q ss_pred             CChHHHHHHHHHHHHHH--------------hhhHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHH
Q 028201            8 PNPKEALRESKREMQHA--------------TRGMEKEIGALQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLRQQIA   73 (212)
Q Consensus         8 ~~pke~~r~~~~~lr~~--------------~r~Ldre~~kle~~e~kl~~~ik~a~kkg~~~~ari~Ak~lvr~rk~~~   73 (212)
                      -||...++..++++...              .+.+.+++..++....+...++..|+++|+-+.|+.++...........
T Consensus        22 EDP~~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr~al~~k~~~e~~~~  101 (221)
T PF04012_consen   22 EDPEKMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAAGREDLAREALQRKADLEEQAE  101 (221)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence            46777777766666544              4566777777778888888888999999999998888776666655443


Q ss_pred             HHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHHHHHhhhHH
Q 028201           74 NLQ-----------GSRAQIRGIATHTQAMHAHSSVAVGMKGASKAMAAMNKQ---MEPAKQAKVMREFQKQSAQMDMTT  139 (212)
Q Consensus        74 ~l~-----------~~~aql~~v~~~l~~a~~~~~~~~am~~~~~~mk~~n~~---~~~~~i~~~m~~f~~e~~~~~~~~  139 (212)
                      .|.           .++.++..+..++.....-..+..+-..++.+-..++..   +++......++.++.....+.-..
T Consensus       102 ~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~~a~a~~~~~~~~~~~~~~~a~~~~er~e~ki~~~ea~a  181 (221)
T PF04012_consen  102 RLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARENAAKAQKKVNEALASFSVSSAMDSFERMEEKIEEMEARA  181 (221)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchHHHHHHHHHHHHHHHHHH
Confidence            322           333344444444555555444444444444444444443   334444444444444444444444


Q ss_pred             HHHhh
Q 028201          140 EMMSD  144 (212)
Q Consensus       140 e~m~d  144 (212)
                      +.+.+
T Consensus       182 ~a~~e  186 (221)
T PF04012_consen  182 EASAE  186 (221)
T ss_pred             HHHHH
Confidence            44433

The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].

>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7

Probab=97.39  E-value=0.0015  Score=51.51  Aligned_cols=147  Identities=17%  Similarity=0.251  Sum_probs=85.9

Q ss_pred             HhhhHHHHHHHHHHHHHHHHHHHHHH---HHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028201           24 ATRGMEKEIGALQQEEKKLVAEIKRT---AKTGNEGATKILARQLIRLRQQIANLQGSRAQIRGIATHTQAMHAHSSVAV  100 (212)
Q Consensus        24 ~~r~Ldre~~kle~~e~kl~~~ik~a---~kkg~~~~ari~Ak~lvr~rk~~~~l~~~~aql~~v~~~l~~a~~~~~~~~  100 (212)
                      ++..|...+..|+++..++..+|++.   +++--..+-+..|+.+++.++.+.+   ...++.....+|+........+.
T Consensus         2 ai~~Lk~~~~~L~~~~~~le~~i~~~~~~~k~~~~~~~~~~A~~~lk~~k~~~k---~~~~~~~~~~~l~~~~~~ie~a~   78 (171)
T PF03357_consen    2 AILKLKKTIRRLEKQIKRLEKKIKKLEKKAKKAIKKGNKERAKIYLKRKKRLEK---QLEKLLNQLSNLESVLLQIETAQ   78 (171)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCTT-HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence            56788999999999999999998764   4444455677889999888886554   44455666677777888788888


Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHH--HHHHHHHHhhhHHH---HHhhhhhhcccchhhHHHHHHHHHHHHHHhcchhh
Q 028201          101 GMKGASKAMAAMNKQMEPAKQAKVMR--EFQKQSAQMDMTTE---MMSDTIDDALDNDEAEEETEELTNQVLDEIGVDVA  175 (212)
Q Consensus       101 am~~~~~~mk~~n~~~~~~~i~~~m~--~f~~e~~~~~~~~e---~m~d~~~~~~~~~~~eee~d~~~~~v~~E~~~~~~  175 (212)
                      ....+..+|+..++.  +.++...|+  ++..-++.+....+   .++++|++.  .....+.-+++++..++++.-+..
T Consensus        79 ~~~~v~~al~~~~~~--Lk~~~~~i~~~~v~~~~d~~~e~~e~~~ei~~~l~~~--~~~~~~~dd~ele~eL~~l~~e~~  154 (171)
T PF03357_consen   79 SNQQVVKALKQSSKA--LKKINKQINLDKVEKLMDDFQEEMEDQDEISEALSDS--MDQVDDVDDEELEEELEQLEDEIE  154 (171)
T ss_dssp             HHHHHSSS----SHH--HHHHHHSTTSCCHHHHHHHHHHHHHHHTS------------------TTSTTCHHHHHHHCCC
T ss_pred             HHHHHHHHHHHHHHH--HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHcc--ccCCCCCCHHHHHHHHHHHHHHHh
Confidence            888888888888877  455554443  33333333332222   233333321  011155666677777777665554


Q ss_pred             hh
Q 028201          176 SQ  177 (212)
Q Consensus       176 ~~  177 (212)
                      ..
T Consensus       155 ~~  156 (171)
T PF03357_consen  155 EE  156 (171)
T ss_dssp             TT
T ss_pred             hh
Confidence            43

The family contains human CHMP1. CHMP1 (CHromatin Modifying Protein; CHarged Multivesicular body Protein), is encoded by an alternative open reading frame in the PRSM1 gene [] and is conserved in both complex and simple eukaryotes. CHMP1 contains a predicted bipartite nuclear localisation signal and distributes as distinct forms to the cytoplasm and the nuclear matrix in all cell lines tested. Human CHMP1 is strongly implicated in multivesicular body formation. A multivesicular body is a vesicle-filled endosome that targets proteins to the interior of lysosomes. Immunocytochemistry and biochemical fractionation localise CHMP1 to early endosomes and CHMP1 physically interacts with SKD1/VPS4, a highly conserved protein directly linked to multivesicular body sorting in yeast. Similar to the action of a mutant SKD1 protein, over expression of a fusion derivative of human CHMP1 dilates endosomal compartments and disrupts the normal distribution of several endosomal markers. Genetic studies in Saccharomyces cerevisiae (Baker's yeast) further support a conserved role of CHMP1 in vesicle trafficking. Deletion of CHM1, the budding yeast homologue of CHMP1, results in defective sorting of carboxypeptidases S and Y and produces abnormal, multi-lamellar prevacuolar compartments. This phenotype classifies CHM1 as a member of the class E vacuolar protein sorting genes []. ; GO: 0015031 protein transport; PDB: 2V6X_B 2W2U_D 2GD5_D 3FRT_B 3FRV_A 4ABM_D 3EAB_H 3HTU_D.

>KOG1656 consensus Protein involved in glucose derepression and pre-vacuolar endosome protein sorting [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.11  E-value=0.098  Score=42.81  Aligned_cols=152  Identities=16%  Similarity=0.173  Sum_probs=96.9

Q ss_pred             HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028201           22 QHATRGMEKEIGALQQEEKKLVAEIKRTAKTGNEGATKILAR----QLIRLRQQIANLQGSRAQIRGIATHTQAMHAHSS   97 (212)
Q Consensus        22 r~~~r~Ldre~~kle~~e~kl~~~ik~a~kkg~~~~ari~Ak----~lvr~rk~~~~l~~~~aql~~v~~~l~~a~~~~~   97 (212)
                      ..++-.|..-..-|.+.+.-|..+|-.-....    |+.|+.    -++..=|...+|.+.-+|++++.+.|..+.-+..
T Consensus        20 ~eaI~kLrEteemL~KKqe~Le~ki~~e~e~~----A~k~~tkNKR~AlqaLkrKK~~E~qL~qidG~l~tie~Qr~alE   95 (221)
T KOG1656|consen   20 QEAIQKLRETEEMLEKKQEFLEKKIEQEVENN----ARKYGTKNKRMALQALKRKKRYEKQLAQIDGTLSTIEFQREALE   95 (221)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            34555665556666777777788777665443    455543    2444455666788888999999998888776555


Q ss_pred             HHHHHHHHHHHHHHHHhcCCHHHHHHHH---HHHHHHHHHhhhHHHHHhhhhhhcccc--hhhHHHHHHHHHHHHHHhcc
Q 028201           98 VAVGMKGASKAMAAMNKQMEPAKQAKVM---REFQKQSAQMDMTTEMMSDTIDDALDN--DEAEEETEELTNQVLDEIGV  172 (212)
Q Consensus        98 ~~~am~~~~~~mk~~n~~~~~~~i~~~m---~~f~~e~~~~~~~~e~m~d~~~~~~~~--~~~eee~d~~~~~v~~E~~~  172 (212)
                      -++.=-.+-.+|+..-+.|.--.=.--+   +++..+......+.+-|+++++.-++.  +.+|+|+..+++.+.+|.  
T Consensus        96 nA~~n~Evl~~m~~~A~AmK~~h~~mDiDkVdd~MdeI~eQqe~a~eIseAiS~Pvg~~a~~DEDEL~~ELdeLeqee--  173 (221)
T KOG1656|consen   96 NANTNTEVLDAMGSAAKAMKAAHKNMDIDKVDDLMDEIAEQQEVAEEISEAISAPVGFGADFDEDELMAELDELEQEE--  173 (221)
T ss_pred             cccccHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHhCccccccccCHHHHHHHHHHHHHHH--
Confidence            5555455556666666663322222222   344444444455556677888888873  578999999999999884  


Q ss_pred             hhhhhccc
Q 028201          173 DVASQLSA  180 (212)
Q Consensus       173 ~~~~~l~~  180 (212)
                       +..++-.
T Consensus       174 -ld~~ll~  180 (221)
T KOG1656|consen  174 -LDKELLD  180 (221)
T ss_pred             -HHHHHhc
Confidence             4444443

>KOG3229 consensus Vacuolar sorting protein VPS24 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.06  E-value=0.13  Score=42.24  Aligned_cols=166  Identities=14%  Similarity=0.242  Sum_probs=93.7

Q ss_pred             hHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028201           10 PKEALRESKREMQHATRGMEKEIGALQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLRQQIANLQGSRAQIRGIATHT   89 (212)
Q Consensus        10 pke~~r~~~~~lr~~~r~Ldre~~kle~~e~kl~~~ik~a~kkg~~~~ari~Ak~lvr~rk~~~~l~~~~aql~~v~~~l   89 (212)
                      |+.-+++..+.+++.+|.=-|++.+.-+.-...+.++++++|.--+.+=+.-++-+.   |.+-+-.+.-.+|-.=..+|
T Consensus         8 ~~pdPKEq~r~wq~kiRke~r~ldrqir~iqree~kv~~~iK~aAKknD~~t~~iLA---KEiv~srk~v~Rly~sKAql   84 (227)
T KOG3229|consen    8 PGPDPKEQVREWQSKIRKEGRQLDRQIRDIQREEEKVQKSIKQAAKKNDKDTCRILA---KEIVQSRKAVKRLYESKAQL   84 (227)
T ss_pred             CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH---HHHHHHHHHHHHHHHhHHHH
Confidence            566678888888888888888888888888888888888887654433333322222   22222222333333333444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH------HHH---HHHHhhhHHHHHhhhhhhcccchhhHHHHH
Q 028201           90 QAMHAHSSVAVGMKGASKAMAAMNKQMEPAKQAKVMRE------FQK---QSAQMDMTTEMMSDTIDDALDNDEAEEETE  160 (212)
Q Consensus        90 ~~a~~~~~~~~am~~~~~~mk~~n~~~~~~~i~~~m~~------f~~---e~~~~~~~~e~m~d~~~~~~~~~~~eee~d  160 (212)
                      ++...      .|+..-..+.-.+..-+--+|-+.|+.      +..   ++.+-=+...+|+..+++.++..++.+|.+
T Consensus        85 nSv~M------~l~eqla~~r~~G~lqkStevMk~v~sLvk~Pel~~TMrelSkEmmKaGIIEEmvdet~esv~d~eeme  158 (227)
T KOG3229|consen   85 NSVSM------QLKEQLATLRVAGSLQKSTEVMKAVNSLVKLPELAATMRELSKEMMKAGIIEEMVDETMESVEDSEEME  158 (227)
T ss_pred             hhHHH------HHHHHHHHHHHHhhHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHH
Confidence            44322      222222233333332222333333322      222   233333455677778888888777777788


Q ss_pred             HHHHHHHHHhcchhh-hhcccCCCC
Q 028201          161 ELTNQVLDEIGVDVA-SQLSAAPKG  184 (212)
Q Consensus       161 ~~~~~v~~E~~~~~~-~~l~~ap~~  184 (212)
                      +.++.-.+.+-..+. ..++.+|..
T Consensus       159 Ee~deEVdkIL~~it~~~~~~~p~a  183 (227)
T KOG3229|consen  159 EEADEEVDKILTEITGEKAGEAPLA  183 (227)
T ss_pred             HHHHHHHHHHHHHHhccccccCCcc
Confidence            888888888877765 345555554

>KOG3231 consensus Predicted assembly/vacuolar sorting protein [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.65  E-value=0.24  Score=39.30  Aligned_cols=158  Identities=20%  Similarity=0.255  Sum_probs=98.0

Q ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH---------HHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028201           11 KEALRESKREMQHATRGMEKEIGALQQEEKKLVA---------EIKRTAKTGNEGATKILARQLIRLRQQIANLQGSRAQ   81 (212)
Q Consensus        11 ke~~r~~~~~lr~~~r~Ldre~~kle~~e~kl~~---------~ik~a~kkg~~~~ari~Ak~lvr~rk~~~~l~~~~aq   81 (212)
                      .-.+|...|.|-+.-|.++++-++|+.+-+++-.         .+|....-. ....|.||-        ..++..+..|
T Consensus        17 ~ReLRkt~RdierdRr~me~~Ek~LElEIkk~Aa~GnndAcr~LAKQLV~lR-kQKtrt~a~--------s~ki~s~~~Q   87 (208)
T KOG3231|consen   17 NRELRKTQRDIERDRRAMEKQEKQLELEIKKMAAIGNNDACRVLAKQLVHLR-KQKTRTFAV--------SSKITSMSTQ   87 (208)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHH-Hhhhhhhhh--------hhhhhhhHHH
Confidence            3458889999999999999999999999888721         112211100 011233321        1223333333


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhHHHHHhhhhhhcccchhhHHHHHH
Q 028201           82 IRGIATHTQAMHAHSSVAVGMKGASKAMAAMNKQMEPAKQAKVMREFQKQSAQMDMTTEMMSDTIDDALDNDEAEEETEE  161 (212)
Q Consensus        82 l~~v~~~l~~a~~~~~~~~am~~~~~~mk~~n~~~~~~~i~~~m~~f~~e~~~~~~~~e~m~d~~~~~~~~~~~eee~d~  161 (212)
                      --.+.+++..+.++..++..|+..++.|.----.-+...++..-.  ..+|. -++|.+.++|.|+..-|.++.++-+..
T Consensus        88 nK~M~s~~km~~AMgTTaKTM~amNk~M~pek~~~tmr~FQ~anm--KMemT-eEMiNDTLDdild~sgDeeEs~aiVNq  164 (208)
T KOG3231|consen   88 NKVMNSQMKMAGAMGTTAKTMQAMNKKMDPEKTLQTMRNFQKANM--KMEMT-EEMINDTLDDILDGSGDEEESQAIVNQ  164 (208)
T ss_pred             HHHHHHHHHHHHHhchHHHHHHHHHccCCHHHHHHHHHHHHHHHH--HhhhH-HHHHHhhHHHHhcCCCcHHHHHHHHHH
Confidence            344666666667777777778777777643322212233332211  11111 256789999999988777888999999


Q ss_pred             HHHHHHHHhcchhhhhcccC
Q 028201          162 LTNQVLDEIGVDVASQLSAA  181 (212)
Q Consensus       162 ~~~~v~~E~~~~~~~~l~~a  181 (212)
                      .++.+-=|+...+. ..|.+
T Consensus       165 VLDEIGIEisgKma-~~P~a  183 (208)
T KOG3231|consen  165 VLDEIGIEISGKMA-KAPSA  183 (208)
T ss_pred             HHHHhhhhhcchhc-cCCcc
Confidence            99999999987654 45643

>KOG2910 consensus Uncharacterized conserved protein predicted to be involved in protein sorting [General function prediction only]

Probab=96.37  E-value=0.42  Score=38.83  Aligned_cols=93  Identities=20%  Similarity=0.180  Sum_probs=58.9

Q ss_pred             HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH-HHHH-------HHH-HHHHHHHHHHHHHHHH
Q 028201           22 QHATRGMEKEIGALQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLR-QQIA-------NLQ-GSRAQIRGIATHTQAM   92 (212)
Q Consensus        22 r~~~r~Ldre~~kle~~e~kl~~~ik~a~kkg~~~~ari~Ak~lvr~r-k~~~-------~l~-~~~aql~~v~~~l~~a   92 (212)
                      .+.+-+|.+++.+|-+..+++.+.+         +.=|.+|+.|||.. |...       +|+ .+-.|.+.--..|+.+
T Consensus        15 DrAIL~lK~QRdkl~qyqkR~e~~l---------e~Er~~Ar~lird~rKdrAlllLKkKryQE~Ll~qt~~qL~nlEqm   85 (209)
T KOG2910|consen   15 DRAILSLKTQRDKLKQYQKRLEKQL---------EAERQLARDLIRDGRKDRALLLLKKKRYQEELLTQTDNQLINLEQM   85 (209)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566777777777777777776663         44577888999863 3222       222 2223333333345567


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 028201           93 HAHSSVAVGMKGASKAMAAMNKQMEPAKQAKVM  125 (212)
Q Consensus        93 ~~~~~~~~am~~~~~~mk~~n~~~~~~~i~~~m  125 (212)
                      .+....+..-+.+...++.-|..  +.+++..|
T Consensus        86 vsdiEft~vqk~V~~gLk~GN~~--lkkl~~~~  116 (209)
T KOG2910|consen   86 VSDIEFTQVQKKVMEGLKQGNEA--LKKLQQEF  116 (209)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhc
Confidence            77777788888888888888877  55555443

>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]

Probab=95.94  E-value=0.83  Score=38.27  Aligned_cols=126  Identities=13%  Similarity=0.242  Sum_probs=74.4

Q ss_pred             CChHHHHHHHHHHHHH--------------HhhhHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHH
Q 028201            8 PNPKEALRESKREMQH--------------ATRGMEKEIGALQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLRQQIA   73 (212)
Q Consensus         8 ~~pke~~r~~~~~lr~--------------~~r~Ldre~~kle~~e~kl~~~ik~a~kkg~~~~ari~Ak~lvr~rk~~~   73 (212)
                      -||+..+...+++...              ..+.+++++..+.....++..+++.|+.+|+.+-|+-.+...-..-+...
T Consensus        23 EDp~~~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~E~LAr~al~~~~~le~~~~  102 (225)
T COG1842          23 EDPEKMLEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQAGNEDLAREALEEKQSLEDLAK  102 (225)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence            5788777776666543              45778888999999999999999999999997666544333322222111


Q ss_pred             -----------HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhh
Q 028201           74 -----------NLQGSRAQIRGIATHTQAMHA---HSSVAVGMKGASKAMAAMNKQMEPAKQAKVMREFQKQSAQMD  136 (212)
Q Consensus        74 -----------~l~~~~aql~~v~~~l~~a~~---~~~~~~am~~~~~~mk~~n~~~~~~~i~~~m~~f~~e~~~~~  136 (212)
                                 ...+++.++..+..+|....+   +.....+..+++.-|..+...++.   ...|..|..--++..
T Consensus       103 ~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ar~~~akA~~~v~~~~~~~s~---~sa~~~fer~e~kie  176 (225)
T COG1842         103 ALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEALKARKAAAKAQEKVNRSLGGGSS---SSAMAAFERMEEKIE  176 (225)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc---hhhHHHHHHHHHHHH
Confidence                       223344444444444443333   333344445555555555555565   455555554444443

>PF03398 Ist1: Regulator of Vps4 activity in the MVB pathway; InterPro: IPR005061 This is a eukaryotic protein family of unknown function

Probab=95.81  E-value=0.21  Score=39.76  Aligned_cols=152  Identities=15%  Similarity=0.170  Sum_probs=92.5

Q ss_pred             HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028201           19 REMQHATRGMEKEIGALQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLRQQIANLQGSRAQIRGIATHTQAMHAHSSV   98 (212)
Q Consensus        19 ~~lr~~~r~Ldre~~kle~~e~kl~~~ik~a~kkg~~~~ari~Ak~lvr~rk~~~~l~~~~aql~~v~~~l~~a~~~~~~   98 (212)
                      ..|+..+..|.-..++.....+..+.+|-..++.|+.+.|++-+.++++-.....-|.-+..-.+-+..++.........
T Consensus         2 ~~lkla~~Rl~~l~~K~~~~~~~~rkdIa~LL~~g~~~~Ar~rvE~li~ed~~~e~~e~Le~yce~l~~r~~~i~~~k~~   81 (165)
T PF03398_consen    2 TQLKLAISRLKLLQNKRQAQAKQARKDIAQLLKNGKEESARIRVEQLIREDNMIEAYEILELYCELLLARFSLIEKSKEC   81 (165)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHCT-TSS
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCC
Confidence            34666677777777888888888899999999999999999999999999999888877777777777776665443333


Q ss_pred             HHHHHHHHHHHHHHHhc-CCHHHHHHHHHH----HHHHHHHh------hhHHHHHhhhhhhcccchhhHHHHHHHHHHHH
Q 028201           99 AVGMKGASKAMAAMNKQ-MEPAKQAKVMRE----FQKQSAQM------DMTTEMMSDTIDDALDNDEAEEETEELTNQVL  167 (212)
Q Consensus        99 ~~am~~~~~~mk~~n~~-~~~~~i~~~m~~----f~~e~~~~------~~~~e~m~d~~~~~~~~~~~eee~d~~~~~v~  167 (212)
                      -..++.+...+=-+... -+++++..+=..    |.+++...      +.+...+-.-++....   +++.++..+.+|+
T Consensus        82 p~~l~eAi~siiyAa~r~~elpEL~~vr~~l~~kyG~~f~~~a~~~~~~~Vn~~iv~kLs~~~p---~~~~v~~~L~eIA  158 (165)
T PF03398_consen   82 PPELKEAISSIIYAAPRCGELPELQEVRKQLAEKYGKEFVEAAMENRDNGVNPRIVEKLSVKPP---SEELVEKYLKEIA  158 (165)
T ss_dssp             SCCHHHHHHHHHHHHHHHTTTCCHHHHHHHHHCCC-HHHHHHHHTTTTTTS-HHHHHHCS-S------CCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhhhccCChhHHHHHHHHHHHhCHHHHHHHHHhcCCCcCHHHHHHcCCCCc---CHHHHHHHHHHHH
Confidence            33333333222222222 356655543332    44444322      1112222222222211   3567888888888


Q ss_pred             HHhcch
Q 028201          168 DEIGVD  173 (212)
Q Consensus       168 ~E~~~~  173 (212)
                      .|+|++
T Consensus       159 ~e~~i~  164 (165)
T PF03398_consen  159 KEYGIP  164 (165)
T ss_dssp             HHCT-S
T ss_pred             HHcCCC
Confidence            888764

; PDB: 3GGZ_B 3GGY_B 3FRR_A 3FRS_A.

>KOG3232 consensus Vacuolar assembly/sorting protein DID2 [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.72  E-value=1.8  Score=34.75  Aligned_cols=34  Identities=12%  Similarity=0.175  Sum_probs=14.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028201           71 QIANLQGSRAQIRGIATHTQAMHAHSSVAVGMKG  104 (212)
Q Consensus        71 ~~~~l~~~~aql~~v~~~l~~a~~~~~~~~am~~  104 (212)
                      ...|+....+++.+....-.--.+|..++++|..
T Consensus        71 lssRvDAVaaRvqTavtmr~Vt~sM~gVvK~md~  104 (203)
T KOG3232|consen   71 LSSRVDAVAARVQTAVTMRKVTKSMAGVVKSMDS  104 (203)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444444444444333333333344444443

>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport]

Probab=86.35  E-value=17  Score=29.83  Aligned_cols=92  Identities=16%  Similarity=0.216  Sum_probs=38.5

Q ss_pred             HhhhHHHHHHHHHHHHHHHHHHHHH---HHHcCChHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028201           24 ATRGMEKEIGALQQEEKKLVAEIKR---TAKTGNEGATKI-LARQLIRLRQQIANLQGSRAQIRGIATHTQAMHAHSSVA   99 (212)
Q Consensus        24 ~~r~Ldre~~kle~~e~kl~~~ik~---a~kkg~~~~ari-~Ak~lvr~rk~~~~l~~~~aql~~v~~~l~~a~~~~~~~   99 (212)
                      .+-.++.-...++..-.+|..++.+   -+++-...-++. +=+.++|.=|+...|...+-+|.+-++-+..++-+.+-.
T Consensus        20 ai~~v~~r~dSve~KIskLDaeL~k~~~Qi~k~R~gpaq~~~KqrAlrVLkQKK~yE~q~d~L~~QsfNMeQa~~t~e~L   99 (218)
T KOG1655|consen   20 AIDSVNKRSDSVEKKISKLDAELCKYKDQIKKTRPGPAQNALKQRALRVLKQKKMYENQKDSLDQQSFNMEQANFTAESL   99 (218)
T ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence            3344444444444444444444422   233333333332 222244444455555555555555555554443322222


Q ss_pred             HHHHHHHHHHHHHHhc
Q 028201          100 VGMKGASKAMAAMNKQ  115 (212)
Q Consensus       100 ~am~~~~~~mk~~n~~  115 (212)
                      +--.....+|+..|+.
T Consensus       100 Kdtq~Tv~AmK~~~k~  115 (218)
T KOG1655|consen  100 KDTQATVAAMKDTNKE  115 (218)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            2222233445555544

>COG1937 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=86.10  E-value=9.9  Score=27.17  Aligned_cols=47  Identities=15%  Similarity=0.225  Sum_probs=36.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028201           68 LRQQIANLQGSRAQIRGIATHTQAMHAHSSVAVGMKGASKAMAAMNK  114 (212)
Q Consensus        68 ~rk~~~~l~~~~aql~~v~~~l~~a~~~~~~~~am~~~~~~mk~~n~  114 (212)
                      +++..+||-+...|+.++..-++.-.-...+...+..+..++..++.
T Consensus         8 kkkl~~RlrRi~GQv~gI~rMlEe~~~C~dVl~QIaAVr~Al~~~~~   54 (89)
T COG1937           8 KKKLLNRLRRIEGQVRGIERMLEEDRDCIDVLQQIAAVRGALNGLMR   54 (89)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHH
Confidence            45677888899999999999888877777777777777776666654

>PRK15039 transcriptional repressor RcnR to maintain nickel and cobalt homeostasis; Provisional

Probab=81.36  E-value=17  Score=25.98  Aligned_cols=48  Identities=10%  Similarity=0.120  Sum_probs=35.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 028201           68 LRQQIANLQGSRAQIRGIATHTQAMHAHSSVAVGMKGASKAMAAMNKQ  115 (212)
Q Consensus        68 ~rk~~~~l~~~~aql~~v~~~l~~a~~~~~~~~am~~~~~~mk~~n~~  115 (212)
                      +++...+|.+...|+.+|..-++.-.....+...+..+-.++..+...
T Consensus         8 k~~ll~RL~RIeGQv~gI~~Miee~~~C~dIl~Ql~Avr~Al~~~~~~   55 (90)
T PRK15039          8 KQKLKARASKIQGQVVALKKMLDEPHECAAVLQQIAAIRGAVNGLMRE   55 (90)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            345667888999999999988887667777777777666666665543

>KOG2911 consensus Uncharacterized conserved protein [Function unknown]

Probab=80.67  E-value=46  Score=30.53  Aligned_cols=147  Identities=14%  Similarity=0.150  Sum_probs=91.6

Q ss_pred             HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHcC---ChHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Q 028201           19 REMQHATRGMEKEIGALQQEEKKLVAEIKRTAKTG---NEGATKILARQLIRLRQQIAN-LQGSRAQIRGIATHTQAMHA   94 (212)
Q Consensus        19 ~~lr~~~r~Ldre~~kle~~e~kl~~~ik~a~kkg---~~~~ari~Ak~lvr~rk~~~~-l~~~~aql~~v~~~l~~a~~   94 (212)
                      ..+.-.+-.|-+-..+|.++-..+.++|+++-.+-   -.++-|..|...+|.|+-.++ +.+.-+.++.+..=|.+...
T Consensus       229 t~~D~~V~~L~~~~~~L~kqie~L~qeie~~~~~~r~~~k~g~K~iA~~ylr~rk~~eK~~er~~~~l~~l~~vl~~Id~  308 (439)
T KOG2911|consen  229 TEIDGSVADLIQARAKLAKQIEFLEQEIEKSKEKLRQALKEGKKQIAITYLRARKLLEKDLERKVSSLNNLETVLSQIDN  308 (439)
T ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh
Confidence            44566677888888899999999999998765543   335678889999999987764 55677666666665555544


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhHHHHHh------hhhhhcccchhhHHHHHHHHHHHHH
Q 028201           95 HSSVAVGMKGASKAMAAMNKQMEPAKQAKVMREFQKQSAQMDMTTEMMS------DTIDDALDNDEAEEETEELTNQVLD  168 (212)
Q Consensus        95 ~~~~~~am~~~~~~mk~~n~~~~~~~i~~~m~~f~~e~~~~~~~~e~m~------d~~~~~~~~~~~eee~d~~~~~v~~  168 (212)
                          +..=+-+-.+++.-+..++  .|-..+-..++--+.++.+.+.++      ++|.+..  ....+.-|+.+++-++
T Consensus       309 ----s~~nkvvl~AyksGs~alK--~il~~~~s~ekVed~Ldev~et~d~~~EV~~~la~~~--~~~~d~~de~lEkEL~  380 (439)
T KOG2911|consen  309 ----SQTNKVVLQAYKSGSEALK--AILAQGGSTEKVEDVLDEVNETLDRQEEVEDALASYN--VNNIDFEDEDLEKELE  380 (439)
T ss_pred             ----hcccHHHHHHHHHhHHHHH--HHHhccCChhhHHHHHHHHHHHHhhHHHHHHHHhcCC--CCCCccchHHHHHHHH
Confidence                3333455567777776633  333323334444444444444444      3343322  1234677778888777


Q ss_pred             Hhcch
Q 028201          169 EIGVD  173 (212)
Q Consensus       169 E~~~~  173 (212)
                      ++..+
T Consensus       381 ~L~~D  385 (439)
T KOG2911|consen  381 DLEAD  385 (439)
T ss_pred             HHHhc
Confidence            77654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	212
3frv_A	152	Structure Of Human Chmp3 (Residues 1-150) Length =		1e-05
3frt_A	218	The Structure Of Human Chmp3 (Residues 8 - 222). Le		4e-05
2gd5_A	179	Structural Basis For Budding By The Escrtiii Factor		2e-04

>pdb|3FRV|A Chain A, Structure Of Human Chmp3 (Residues 1-150) Length = 152

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 71/153 (46%), Gaps = 12/153 (7%)
Query: 1   MNIFSK---KPNPKEALRESKREMQHATRGMEKEIGALQQEEKKLVAEIKRTAKTGNEGA 57
           M +F K   KP PKE + E   +++   R ++++I  +Q+EE+K+   +K  AK G +  
Sbjct: 3   MGLFGKTQEKP-PKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDV 61
Query: 58  TKILARQLIRLRQQIANLQGSRAQ----IRGIATHTQAMHAHSSVXXXXXXXXXXXXXXX 113
             +LA+++IR R+ ++ L  S+A     + G+      +    S+               
Sbjct: 62  CIVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVK 121
Query: 114 XQMEPAKQAKVMREFQKQSAQMDMTTEMMSDTI 146
               P  QA  MRE  K+  +  +  EM+ DT 
Sbjct: 122 I---PEIQA-TMRELSKEMMKAGIIEEMLEDTF 150

>pdb|3FRT|A Chain A, The Structure Of Human Chmp3 (Residues 8 - 222). Length = 218

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 34/140 (24%), Positives = 66/140 (47%), Gaps = 1/140 (0%)
Query: 7   KPNPKEALRESKREMQHATRGMEKEIGALQQEEKKLVAEIKRTAKTGNEGATKILARQLI 66
           KP PKE + E   +++   R ++++I  +Q+EE+K+   +K  AK G +    +LA+++I
Sbjct: 6   KP-PKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKEMI 64
Query: 67  RLRQQIANLQGSRAQIRGIATHTQAMHAHSSVXXXXXXXXXXXXXXXXQMEPAKQAKVMR 126
           R R+ ++ L  S+A +  +    +   A   V                 ++  +    MR
Sbjct: 65  RSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPEIQATMR 124
Query: 127 EFQKQSAQMDMTTEMMSDTI 146
           E  K+  +  +  EM+ DT 
Sbjct: 125 ELSKEMMKAGIIEEMLEDTF 144

>pdb|2GD5|A Chain A, Structural Basis For Budding By The Escrtiii Factor Chmp3 Length = 179

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/143 (26%), Positives = 69/143 (48%), Gaps = 3/143 (2%)
Query: 5   SKKPNPKEALRESKREMQHATRGMEKEIGALQQEEKKLVAEIKRTAKTGNEGATKILARQ 64
           ++KP PKE + E   +++   R ++++I  +Q+EE+K+   +K  AK G +    +LA++
Sbjct: 4   AEKP-PKELVNEWSLKIRKEXRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKE 62
Query: 65  LIRLRQQIANLQGSRAQIRGIATHTQAMHAHSSVXXXXXXXXXXXXXXXXQME-PAKQAK 123
            IR R+ ++ L  S+A    +    +   A   V                 ++ P  QA 
Sbjct: 63  XIRSRKAVSKLYASKAHXNSVLXGXKNQLAVLRVAGSLQKSTEVXKAXQSLVKIPEIQA- 121
Query: 124 VMREFQKQSAQMDMTTEMMSDTI 146
             RE  K+  +  +  EM+ DT 
Sbjct: 122 TXRELSKEXXKAGIIEEMLEDTF 144

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	212
3frt_A	218	Charged multivesicular BODY protein 3; ESCRT, ESCR	3e-35
2gd5_A	179	Charged multivesicular BODY protein 3; CHMP3, ESCR	2e-33
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-10
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	6e-04

>3frt_A Charged multivesicular BODY protein 3; ESCRT, ESCRT-111, CHMP, IST1, coiled coil, cytoplasm, lipoprotein, membrane, myristate, phosphoprotein; 4.00A {Homo sapiens} Length = 218

 Score =  122 bits (308), Expect = 3e-35
 Identities = 53/216 (24%), Positives = 107/216 (49%), Gaps = 9/216 (4%)

Query: 5   SKKPNPKEALRESKREMQHATRGMEKEIGALQQEEKKLVAEIKRTAKTGNEGATKILARQ 64
            ++  PKE + E   +++   R ++++I  +Q+EE+K+   +K  AK G +    +LA++
Sbjct: 3   MQEKPPKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKE 62

Query: 65  LIRLRQQIANLQGSRAQIRGIATHTQAMHAHSSVAVGMKGASKAMAAMNKQMEPAKQAKV 124
           +IR R+ ++ L  S+A +  +    +   A   VA  ++ +++ M AM   ++  +    
Sbjct: 63  MIRSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPEIQAT 122

Query: 125 MREFQKQSAQMDMTTEMMSDTIDDALDNDEAEEETEELTNQVLDEIGVDVASQLSAAP-- 182
           MRE  K+  +  +  EM+ DT +   D +E EEE E   +++L EI      +  +    
Sbjct: 123 MRELSKEMMKAGIIEEMLEDTFESMDDQEEMEEEAEMEIDRILFEITAGALGKAPSKVTD 182

Query: 183 -------KGKIASKNTEDASSSGIDELEKRLAALRN 211
                   G +A+   E+     ++ ++ RLA LR+
Sbjct: 183 ALPEPEPPGAMAASEDEEEEEEALEAMQSRLATLRS 218

>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A Length = 179

 Score =  117 bits (293), Expect = 2e-33
 Identities = 45/176 (25%), Positives = 90/176 (51%)

Query: 5   SKKPNPKEALRESKREMQHATRGMEKEIGALQQEEKKLVAEIKRTAKTGNEGATKILARQ 64
             +  PKE + E   +++   R ++++I  +Q+EE+K+   +K  AK G +    +LA++
Sbjct: 3   MAEKPPKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKE 62

Query: 65  LIRLRQQIANLQGSRAQIRGIATHTQAMHAHSSVAVGMKGASKAMAAMNKQMEPAKQAKV 124
           +IR R+ ++ L  S+A +  +    +   A   VA  ++ +++ M AM   ++  +    
Sbjct: 63  MIRSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPEIQAT 122

Query: 125 MREFQKQSAQMDMTTEMMSDTIDDALDNDEAEEETEELTNQVLDEIGVDVASQLSA 180
           MRE  K+  +  +  EM+ DT +   D +E EEE E   +++L EI      +  +
Sbjct: 123 MRELSKEMMKAGIIEEMLEDTFESMDDQEEMEEEAEMEIDRILFEITAGALGKAPS 178

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 58.3 bits (140), Expect = 3e-10
 Identities = 49/290 (16%), Positives = 82/290 (28%), Gaps = 85/290 (29%)

Query: 2   NIFSKK--------PNPKEALR------ESKREMQHATRGMEKEIGALQQEEKKLVAEIK 47
           +I SK+         +             SK+E +   + +E     L+   K L++ IK
Sbjct: 44  SILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQE-EMVQKFVE---EVLRINYKFLMSPIK 99

Query: 48  RTAKTGNEGATKILARQLIRLR---QQIANLQGSRAQ-IRGIATHTQAMHAHSSVAV-GM 102
              +      T++   Q  RL    Q  A    SR Q    +      +    +V + G+
Sbjct: 100 TEQR-QPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGV 158

Query: 103 KGASK----AMAAMNKQMEPAKQAKV--------------MREFQKQSAQMDMTTEMMSD 144
            G+ K        ++ +++     K+              +   QK   Q+D      SD
Sbjct: 159 LGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSD 218

Query: 145 TIDDA-LDNDEAEEETEELTNQ--------VLDEI--------------------GVDVA 175
              +  L     + E   L           VL  +                       V 
Sbjct: 219 HSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVT 278

Query: 176 SQLSAAPKGKIASKN-----TEDAS--------SSGIDELEKRLAALRNP 212
             LSAA    I+  +     T D               +L  R     NP
Sbjct: 279 DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL-PREVLTTNP 327

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 39.4 bits (92), Expect = 6e-04
 Identities = 26/159 (16%), Positives = 58/159 (36%), Gaps = 9/159 (5%)

Query: 11   KEALRESKREMQHATRGMEKEIGALQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLRQ 70
            K        E++   +  EK    L++ ++KL  E     +   E     L  Q+  L+ 
Sbjct: 1034 KNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAE-----LQAQIAELKA 1088

Query: 71   QIANLQGSRAQIRGIATHTQAMHAHSSVAVGMKGASKAMAAMNKQMEPAKQAKVMREFQK 130
            Q+A  +         A         ++    ++     ++ + + +E  K A+   + +K
Sbjct: 1089 QLAKKEEELQAAL--ARLEDETSQKNNALKKIRELESHISDLQEDLESEKAAR--NKAEK 1144

Query: 131  QSAQMDMTTEMMSDTIDDALDNDEAEEETEELTNQVLDE 169
            Q   +    E +   ++D LD    ++E      +  D+
Sbjct: 1145 QKRDLSEELEALKTELEDTLDTTATQQELRGSDYKDDDD 1183

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	212
3frt_A	218	Charged multivesicular BODY protein 3; ESCRT, ESCR	100.0
2gd5_A	179	Charged multivesicular BODY protein 3; CHMP3, ESCR	100.0
3eab_G	50	CHMP1B; spastin, MIT, ESCRT, alternative splicing,	98.86
3um3_B	104	Charged multivesicular BODY protein 4B; alpha-heli	98.77
3frt_A	218	Charged multivesicular BODY protein 3; ESCRT, ESCR	98.48
4abm_A	79	Charged multivesicular BODY protein 4B; cell cycle	97.88
2gd5_A	179	Charged multivesicular BODY protein 3; CHMP3, ESCR	97.53
2luh_B	59	Vacuolar protein-sorting-associated protein 60; VT	97.25
3frr_A	191	Uncharacterized protein KIAA0174; ESCRT, ESCRT-III	96.98
2v6x_B	54	DOA4-independent degradation protein 4; protein tr	95.56
3ggy_A	193	Increased sodium tolerance protein 1; ESCRT-III li	95.28
3ggz_E	29	Vacuolar protein-sorting-associated protein 46; no	94.28
2xze_Q	40	Charged multivesicular BODY protein 3; hydrolase-p	93.99
2lxm_B	57	Charged multivesicular BODY protein 5; MIT, protei	89.92

>3frt_A Charged multivesicular BODY protein 3; ESCRT, ESCRT-111, CHMP, IST1, coiled coil, cytoplasm, lipoprotein, membrane, myristate, phosphoprotein; 4.00A {Homo sapiens}

Probab=100.00  E-value=7.3e-51  Score=334.62  Aligned_cols=202  Identities=26%  Similarity=0.421  Sum_probs=140.5

Q ss_pred             CCChHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028201            7 KPNPKEALRESKREMQHATRGMEKEIGALQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLRQQIANLQGSRAQIRGIA   86 (212)
Q Consensus         7 ~~~pke~~r~~~~~lr~~~r~Ldre~~kle~~e~kl~~~ik~a~kkg~~~~ari~Ak~lvr~rk~~~~l~~~~aql~~v~   86 (212)
                      ++||+|++|+|++.||++.|+|+|++.+|++++++++.+||+++++||+++|||||+++||+|+++.+||.++++|++|+
T Consensus         5 ~~~p~e~~r~~~r~Lr~~~R~LdR~~~kle~eEkk~~~~IKkaakkg~~~~arilAkelVR~Rk~~~rl~~~kaqL~sV~   84 (218)
T 3frt_A            5 EKPPKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKEMIRSRKAVSKLYASKAHMNSVL   84 (218)
T ss_dssp             ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhHHHHHhhhhhhcccchhhHHHHHHHHHHH
Q 028201           87 THTQAMHAHSSVAVGMKGASKAMAAMNKQMEPAKQAKVMREFQKQSAQMDMTTEMMSDTIDDALDNDEAEEETEELTNQV  166 (212)
Q Consensus        87 ~~l~~a~~~~~~~~am~~~~~~mk~~n~~~~~~~i~~~m~~f~~e~~~~~~~~e~m~d~~~~~~~~~~~eee~d~~~~~v  166 (212)
                      ++|+++.++.+++++|++++++|+.+|+.||+++|+.+|++|++|++++|+++|||+|+|++.++++++++++|++|++|
T Consensus        85 ~rlqt~~s~~~v~~sM~~st~~M~~~n~~m~l~~i~~tM~efekE~~k~~i~eEmm~Da~d~~~~~~~~eee~d~~v~kV  164 (218)
T 3frt_A           85 MGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLEDTFESMDDQEEMEEEAEMEIDRI  164 (218)
T ss_dssp             HHHHHHHHCC----CCCCCHHHHHHHHHSTTSHHHHHHHHHHHHHHHHHSCC----------------CTTSTTTHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcccccCCchHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999998888778899999999999


Q ss_pred             HHHhcchhhhhcccCCCC---CCCCCCc------c---CCCCccHHHHHHHHHhhcC
Q 028201          167 LDEIGVDVASQLSAAPKG---KIASKNT------E---DASSSGIDELEKRLAALRN  211 (212)
Q Consensus       167 ~~E~~~~~~~~l~~ap~~---~~~~~~~------~---~~~~~~~~~l~~RL~aLr~  211 (212)
                      ++|+|.+   +|+.+|++   .+|.+..      +   ++.++.+++|++||+|||+
T Consensus       165 ldEi~~~---~l~~~p~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~m~~rl~al~s  218 (218)
T 3frt_A          165 LFEITAG---ALGKAPSKVTDALPEPEPPGAMAASEDEEEEEEALEAMQSRLATLRS  218 (218)
T ss_dssp             HHTC-----------------------------------------------------
T ss_pred             HHHHhHh---HhhcCCCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcC
Confidence            9999964   45555543   2222110      0   1122346789999999995

>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A

Probab=100.00  E-value=3.5e-45  Score=294.36  Aligned_cols=179  Identities=27%  Similarity=0.408  Sum_probs=141.6

Q ss_pred             CCCCCCCChHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028201            2 NIFSKKPNPKEALRESKREMQHATRGMEKEIGALQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLRQQIANLQGSRAQ   81 (212)
Q Consensus         2 ~~fg~~~~pke~~r~~~~~lr~~~r~Ldre~~kle~~e~kl~~~ik~a~kkg~~~~ari~Ak~lvr~rk~~~~l~~~~aq   81 (212)
                      |+|+ +|||+|.+|+|++.||+++|+|+|++.+|++++++++.+||+++++|+.++||+||+++||.|+++.+|+.++++
T Consensus         1 ~~~~-~~~p~e~lr~~~~~L~~~~r~Ldr~~~kle~~ekk~~~~Ikka~k~g~~~~aki~Ak~lvr~rk~~~~l~~~~a~   79 (179)
T 2gd5_A            1 GAMA-EKPPKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKEMIRSRKAVSKLYASKAH   79 (179)
T ss_dssp             --------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCC-CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4676 589999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhHHHHHhhhhhhcccchhhHHHHHH
Q 028201           82 IRGIATHTQAMHAHSSVAVGMKGASKAMAAMNKQMEPAKQAKVMREFQKQSAQMDMTTEMMSDTIDDALDNDEAEEETEE  161 (212)
Q Consensus        82 l~~v~~~l~~a~~~~~~~~am~~~~~~mk~~n~~~~~~~i~~~m~~f~~e~~~~~~~~e~m~d~~~~~~~~~~~eee~d~  161 (212)
                      |++|.++|+++.++..++++|++++++|+.+|+.||+++|..+|++|+++++++++++|+|+++|+++++++++++++++
T Consensus        80 l~~v~~~lqt~~~~~~v~~am~~~~~~M~~~n~~m~l~~i~~~M~e~~~e~~~~~~~~E~m~d~~~~~~~~~~~eee~d~  159 (179)
T 2gd5_A           80 MNSVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLEDTFESMDDQEEMEEEAEM  159 (179)
T ss_dssp             HHHHHHHHHHHHHHHHHTSSCCCCSHHHHTTTSSTTSSSCCHHHHHHHHHHHHHTSCC-------------------CTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCcHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999998888888999999


Q ss_pred             HHHHHHHHhcchhhhhcccCCCC
Q 028201          162 LTNQVLDEIGVDVASQLSAAPKG  184 (212)
Q Consensus       162 ~~~~v~~E~~~~~~~~l~~ap~~  184 (212)
                      ++++|++|+|+   ++||.+|++
T Consensus       160 ~v~kVl~E~~~---~~l~~~P~~  179 (179)
T 2gd5_A          160 EIDRILFEITA---GALGKAPSK  179 (179)
T ss_dssp             HHHHTTCCC--------------
T ss_pred             HHHHHHHHhhH---hhcccCCCC
Confidence            99999999985   478888763

>3eab_G CHMP1B; spastin, MIT, ESCRT, alternative splicing, ATP- binding, cytoplasm, disease mutation, hereditary spastic paraplegia, nucleotide-binding; 2.50A {Homo sapiens}

Probab=98.86  E-value=9.8e-11  Score=74.04  Aligned_cols=49  Identities=33%  Similarity=0.561  Sum_probs=30.9

Q ss_pred             HHHHHHHHHHHhcchhhhhcccCCCCCCCCCCccCCCCccHHHHHHHHHhhcC
Q 028201          159 TEELTNQVLDEIGVDVASQLSAAPKGKIASKNTEDASSSGIDELEKRLAALRN  211 (212)
Q Consensus       159 ~d~~~~~v~~E~~~~~~~~l~~ap~~~~~~~~~~~~~~~~~~~l~~RL~aLr~  211 (212)
                      +|++++||+||+|+++..+|+.+|.+.++..    ....++|+|.+||++||+
T Consensus         2 Vd~Lm~qVaDE~Glel~~~L~~~~~~~~~~~----~~~~~eD~L~~RLaaLR~   50 (50)
T 3eab_G            2 VDMLLQEMADEAGLDLNMELPQGQTGSVGTS----VASAEQDELSQRLARLRD   50 (50)
T ss_dssp             CCHHHHHHHHHTTCC---------CHHHHHH----HHHHHHHHHHHHHHTTC-
T ss_pred             HHHHHHHHHHHhCchHHhhcccccccccCCC----CCcccHHHHHHHHHHHhC
Confidence            6789999999999999999999987654321    123468999999999995

>3um3_B Charged multivesicular BODY protein 4B; alpha-helix of C-terminal tail of CHMP4B, ESCRT-III, CHMPS, protein-transport protein complex, BROX; 3.80A {Homo sapiens}

Probab=98.77  E-value=2.8e-08  Score=72.05  Aligned_cols=75  Identities=24%  Similarity=0.374  Sum_probs=54.5

Q ss_pred             cCCHHHHHHHHHHHHHHHHHhhhHHHHHhhhhh--hcccchhhHHHHHHHHHHHHHHhcchhh----hhcccCCCCCCCC
Q 028201          115 QMEPAKQAKVMREFQKQSAQMDMTTEMMSDTID--DALDNDEAEEETEELTNQVLDEIGVDVA----SQLSAAPKGKIAS  188 (212)
Q Consensus       115 ~~~~~~i~~~m~~f~~e~~~~~~~~e~m~d~~~--~~~~~~~~eee~d~~~~~v~~E~~~~~~----~~l~~ap~~~~~~  188 (212)
                      .|++++|..+|+++..++++.+.|+++|+.+++  ..+|+++.+.|++.+....+++-.++++    ..||.+|++.+|.
T Consensus         2 ~m~idkVe~lmDei~E~~e~~~EI~e~Ls~~~~~~~~~DEdELe~ELe~Le~e~l~~~~l~~~~~~~~~LP~vP~~~lp~   81 (104)
T 3um3_B            2 NMDIDKVDELMQDIADQQELAEEISTAISKPVGFGEEFDEDELMAELEELEQEELDKNLLEISGPETVPLPNVPSIALPS   81 (104)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCcCCC
Confidence            589999999999999999999999999999874  2344444555555555555555333332    3589999887764


Q ss_pred             C
Q 028201          189 K  189 (212)
Q Consensus       189 ~  189 (212)
                      .
T Consensus        82 ~   82 (104)
T 3um3_B           82 K   82 (104)
T ss_pred             C
Confidence            3

>3frt_A Charged multivesicular BODY protein 3; ESCRT, ESCRT-111, CHMP, IST1, coiled coil, cytoplasm, lipoprotein, membrane, myristate, phosphoprotein; 4.00A {Homo sapiens}

Probab=98.48  E-value=8.8e-08  Score=78.40  Aligned_cols=154  Identities=12%  Similarity=0.216  Sum_probs=76.8

Q ss_pred             CChHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH---HHHHHcCChHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q 028201            8 PNPKEALRESKREMQHATRGMEKEIGALQQEEKKLVAEI---KRTAKTGNEGATKILARQLIRL-RQQIANLQGSRAQIR   83 (212)
Q Consensus         8 ~~pke~~r~~~~~lr~~~r~Ldre~~kle~~e~kl~~~i---k~a~kkg~~~~ari~Ak~lvr~-rk~~~~l~~~~aql~   83 (212)
                      ++|+..+++.   +|...|.|.+..+.|+++..++...=   +..+|+--..+-.    +.+|. =+...+..+...++-
T Consensus         2 ~~~~~~p~e~---~r~~~r~Lr~~~R~LdR~~~kle~eEkk~~~~IKkaakkg~~----~~arilAkelVR~Rk~~~rl~   74 (218)
T 3frt_A            2 HMQEKPPKEL---VNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQK----DVCIVLAKEMIRSRKAVSKLY   74 (218)
T ss_dssp             ------CHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCH----HHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCH----HHHHHHHHHHHHHHHHHHHHH
Confidence            3555555555   56666777777777777777765543   3334332221111    12221 123345556777888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHH--HHHHHHHHHh---hhHHHHHhhhhhhcccchhhHHH
Q 028201           84 GIATHTQAMHAHSSVAVGMKGASKAMAAMNKQMEPAKQAKVM--REFQKQSAQM---DMTTEMMSDTIDDALDNDEAEEE  158 (212)
Q Consensus        84 ~v~~~l~~a~~~~~~~~am~~~~~~mk~~n~~~~~~~i~~~m--~~f~~e~~~~---~~~~e~m~d~~~~~~~~~~~eee  158 (212)
                      .+.++|++.....+...++..++..|+.+...  ...+...|  .++..-|.++   -+.-+++++.|++.+++..++++
T Consensus        75 ~~kaqL~sV~~rlqt~~s~~~v~~sM~~st~~--M~~~n~~m~l~~i~~tM~efekE~~k~~i~eEmm~Da~d~~~~~~~  152 (218)
T 3frt_A           75 ASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEV--MKAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLEDTFESMDDQEE  152 (218)
T ss_dssp             HHHHHHHHHHHHHHHHHHCC----CCCCCHHH--HHHHHHSTTSHHHHHHHHHHHHHHHHHSCC----------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHcCCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcccccCC
Confidence            88889999888888888888888888887777  45555555  5555555555   33334666778887766554455


Q ss_pred             HHHHHHHHHHHh
Q 028201          159 TEELTNQVLDEI  170 (212)
Q Consensus       159 ~d~~~~~v~~E~  170 (212)
                      .+++++.+.+.+
T Consensus       153 ~eee~d~~v~kV  164 (218)
T 3frt_A          153 MEEEAEMEIDRI  164 (218)
T ss_dssp             CTTSTTTHHHHH
T ss_pred             chHHHHHHHHHH
Confidence            555556555543

>4abm_A Charged multivesicular BODY protein 4B; cell cycle, protein transport, HIV-1; 1.80A {Homo sapiens}

Probab=97.88  E-value=0.00039  Score=47.73  Aligned_cols=74  Identities=15%  Similarity=0.175  Sum_probs=61.3

Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q 028201           13 ALRESKREMQHATRGMEKEIGALQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLRQQIANLQ-GSRAQIRGIATHTQA   91 (212)
Q Consensus        13 ~~r~~~~~lr~~~r~Ldre~~kle~~e~kl~~~ik~a~kkg~~~~ari~Ak~lvr~rk~~~~l~-~~~aql~~v~~~l~~   91 (212)
                      .+.+++..||.+...|+.....|+..-......+|+++ .+|    +.-|..++|.||+++..+ ++.+++.+++.++.+
T Consensus         3 ~~~~AI~~Lr~~~d~L~kkq~~L~~~i~~e~~~Ak~~~-~kn----K~~Al~aLkrKK~~E~qL~q~~~ql~~LE~q~~~   77 (79)
T 4abm_A            3 MEQEAIQRLRDTEEMLSKKQEFLEKKIEQELTAAKKHG-TKN----KRAALQALKRKKRYEKQLAQIDGTLSTIEFQREA   77 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TSC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcC----HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Confidence            45678888899999999999999998888888889888 555    346788899999998754 899999999988765

>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A

Probab=97.53  E-value=5.3e-05  Score=60.01  Aligned_cols=148  Identities=11%  Similarity=0.184  Sum_probs=82.0

Q ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028201           20 EMQHATRGMEKEIGALQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLR-QQIANLQGSRAQIRGIATHTQAMHAHSSV   98 (212)
Q Consensus        20 ~lr~~~r~Ldre~~kle~~e~kl~~~ik~a~kkg~~~~ari~Ak~lvr~r-k~~~~l~~~~aql~~v~~~l~~a~~~~~~   98 (212)
                      .||...+.|.+.++.|+++..++..+-++....= ..+++--.....|.. +...+..+...+|....++|++.....+.
T Consensus        11 ~lr~~~~~L~~~~r~Ldr~~~kle~~ekk~~~~I-kka~k~g~~~~aki~Ak~lvr~rk~~~~l~~~~a~l~~v~~~lqt   89 (179)
T 2gd5_A           11 LVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSV-KDAAKKGQKDVCIVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKN   89 (179)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4788999999999999999999877766442211 112221112222222 23334446777888888999999888888


Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHH--HHHHHH---HHHhhhHHHHHhhhhhhcccchhhHHHHHHHHHHHHHHh
Q 028201           99 AVGMKGASKAMAAMNKQMEPAKQAKVM--REFQKQ---SAQMDMTTEMMSDTIDDALDNDEAEEETEELTNQVLDEI  170 (212)
Q Consensus        99 ~~am~~~~~~mk~~n~~~~~~~i~~~m--~~f~~e---~~~~~~~~e~m~d~~~~~~~~~~~eee~d~~~~~v~~E~  170 (212)
                      ..++..++.+|+.....  +..+...|  +++..-   |++.-..-+++++.|++.+++..++++.+++++.+++.+
T Consensus        90 ~~~~~~v~~am~~~~~~--M~~~n~~m~l~~i~~~M~e~~~e~~~~~~~~E~m~d~~~~~~~~~~~eee~d~~v~kV  164 (179)
T 2gd5_A           90 QLAVLRVAGSLQKSTEV--MKAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLEDTFESMDDQEEMEEEAEMEIDRI  164 (179)
T ss_dssp             HHHHHHHTSSCCCCSHH--HHTTTSSTTSSSCCHHHHHHHHHHHHHTSCC-------------------CTTHHHHT
T ss_pred             HHHHHHHHHHHHHHHHH--HHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCcHHHHHHHHHHH
Confidence            88888888888877766  34444444  444444   444444445568888888876555556666666665554

>2luh_B Vacuolar protein-sorting-associated protein 60; VTA1, VPS60, ESCRT, MVB, novel MIT recognition mode, protein transport, endocytosis; NMR {Saccharomyces cerevisiae}

Probab=97.25  E-value=0.00019  Score=46.16  Aligned_cols=54  Identities=15%  Similarity=0.127  Sum_probs=46.8

Q ss_pred             CCHHHHHHHHHHHHHHHHHhhhHHHHHhhhhhhcccchhhHHHHHHHHHHHHHH
Q 028201          116 MEPAKQAKVMREFQKQSAQMDMTTEMMSDTIDDALDNDEAEEETEELTNQVLDE  169 (212)
Q Consensus       116 ~~~~~i~~~m~~f~~e~~~~~~~~e~m~d~~~~~~~~~~~eee~d~~~~~v~~E  169 (212)
                      +|+++|..+++++...++..+.|+++++.+++....++.++++++++++.+.+|
T Consensus         1 inIDkIedlqDem~Dl~e~~nEIQE~L~rsy~~pe~DdiDE~eL~aELdaL~de   54 (59)
T 2luh_B            1 INIDKLQDMQDEMLDLIEQGDELQEVLAMNNNSGELDDISDAELDAELDALAQE   54 (59)
T ss_dssp             CHHHHHHSCSSCHHHHHHHHHHHHHHHHHHHTTCCGGGTTHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccccCCHHHHHHHHHHhhcc
Confidence            578999999999999999999999999999876433456789999999988877

>3frr_A Uncharacterized protein KIAA0174; ESCRT, ESCRT-III, CHMP, IST1, alternative splicing, phosphoprotein, protein binding; 1.80A {Homo sapiens} PDB: 3frs_A

Probab=96.98  E-value=0.045  Score=43.56  Aligned_cols=166  Identities=9%  Similarity=0.093  Sum_probs=106.9

Q ss_pred             CCCCCCChHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028201            3 IFSKKPNPKEALRESKREMQHATRGMEKEIGALQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLRQQIANLQGSRAQI   82 (212)
Q Consensus         3 ~fg~~~~pke~~r~~~~~lr~~~r~Ldre~~kle~~e~kl~~~ik~a~kkg~~~~ari~Ak~lvr~rk~~~~l~~~~aql   82 (212)
                      +||++..+    -+++..|+..+..|.-..+|-....++.+.+|-..++.|..+.||+-+.++||-....+=|.-+.--.
T Consensus         3 mf~~~~~~----~K~K~~Lklai~Rl~ll~~Kk~~~~k~~RrdIA~LL~~gk~~~AriRvE~iI~ed~~ie~~EilElyC   78 (191)
T 3frr_A            3 MLGSGFKA----ERLRVNLRLVINRLKLLEKKKTELAQKARKEIADYLAAGKDERARIRVEHIIREDYLVEAMEILELYC   78 (191)
T ss_dssp             -CCCCCCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCCCCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            68876553    35666677777777677777777788889999999999999999999999999999888776666666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhc-CCHHHHHHHHH----HHHHHHHHh------hhHHHHHhhhhhhcc
Q 028201           83 RGIATHTQAMHAHSSVAVGMKGASKA-MAAMNKQ-MEPAKQAKVMR----EFQKQSAQM------DMTTEMMSDTIDDAL  150 (212)
Q Consensus        83 ~~v~~~l~~a~~~~~~~~am~~~~~~-mk~~n~~-~~~~~i~~~m~----~f~~e~~~~------~~~~e~m~d~~~~~~  150 (212)
                      +-+..++.....+...-..++.+... +=...+. -+++++..+=+    .|.+++...      +-+.+.+-.-++...
T Consensus        79 elL~~R~~li~~~k~cp~~l~EAvsslIyAa~R~~~elpEL~~ir~~l~~KyGkeF~~~a~e~~~~~Vn~~iv~kLs~~~  158 (191)
T 3frr_A           79 DLLLARFGLIQSMKELDSGLAESVSTLIWAAPRLQSEVAELKIVADQLCAKYSKEYGKLCRTNQIGTVNDRLMHKLSVEA  158 (191)
T ss_dssp             HHHHHTHHHHHSCSSCCGGGHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCHHHHHHHHTTTTSCSCHHHHHHTCCSC
T ss_pred             HHHHHHHHHHhccCCCCHHHHHHHHHHHHhhhcccccChHHHHHHHHHHHHhCHHHHHHHHHcCCCCcCHHHHHHcCCCC
Confidence            66666665554433333334433333 3333443 57777765443    345555433      112222222233222


Q ss_pred             cchhhHHHHHHHHHHHHHHhcchhh
Q 028201          151 DNDEAEEETEELTNQVLDEIGVDVA  175 (212)
Q Consensus       151 ~~~~~eee~d~~~~~v~~E~~~~~~  175 (212)
                      .   +.+-++..+..|+.++|++..
T Consensus       159 P---~~~lv~~yL~EIA~~y~V~w~  180 (191)
T 3frr_A          159 P---PKILVERYLIEIAKNYNVPYE  180 (191)
T ss_dssp             C---CHHHHHHHHHHHHHHHTCCCC
T ss_pred             c---CHHHHHHHHHHHHHHcCCCCC
Confidence            2   356788899999999988653

>2v6x_B DOA4-independent degradation protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}

Probab=95.56  E-value=0.0024  Score=40.56  Aligned_cols=14  Identities=36%  Similarity=0.567  Sum_probs=12.9

Q ss_pred             cHHHHHHHHHhhcC
Q 028201          198 GIDELEKRLAALRN  211 (212)
Q Consensus       198 ~~~~l~~RL~aLr~  211 (212)
                      .+|||++||++||.
T Consensus        39 ~ddDLQARLdsLRR   52 (54)
T 2v6x_B           39 PDDDLQARLNTLKK   52 (54)
T ss_dssp             CCHHHHHHHHHHHC
T ss_pred             chHHHHHHHHHhcc
Confidence            68999999999986

>3ggy_A Increased sodium tolerance protein 1; ESCRT-III like, phosphoprotein, protein transport, endocytosis; 1.70A {Saccharomyces cerevisiae} PDB: 3ggz_A

Probab=95.28  E-value=0.84  Score=36.19  Aligned_cols=158  Identities=11%  Similarity=0.082  Sum_probs=103.1

Q ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028201           14 LRESKREMQHATRGMEKEIGALQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLRQQIANLQGSRAQIRGIATHTQAMH   93 (212)
Q Consensus        14 ~r~~~~~lr~~~r~Ldre~~kle~~e~kl~~~ik~a~kkg~~~~ari~Ak~lvr~rk~~~~l~~~~aql~~v~~~l~~a~   93 (212)
                      .-+++..|+..+..|.-..+|-....+..+.+|-..++.|..+.||+-+.++||-.....-|.-+.--.+-+..++....
T Consensus         9 ~~KlK~~Lklai~Rl~llq~Kk~~~~k~~RrdIA~LL~~gk~~~AriRvE~iI~ed~~ie~~EilElyCelL~aR~~ll~   88 (193)
T 3ggy_A            9 TIKLKTCLKMCIQRLRYAQEKQQAIAKQSRRQVAQLLLTNKEQKAHYRVETLIHDDIHIELLEILELYCELLLARVQVIN   88 (193)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45677788888888888888888888889999999999999999999999999999988766665555555555554433


Q ss_pred             H--------HHHHHHHHHHHHHHHH-HHHhcCCHHHHHHHH----HHHHHHHHHh------hhHHHHHhhhhhhcccchh
Q 028201           94 A--------HSSVAVGMKGASKAMA-AMNKQMEPAKQAKVM----REFQKQSAQM------DMTTEMMSDTIDDALDNDE  154 (212)
Q Consensus        94 ~--------~~~~~~am~~~~~~mk-~~n~~~~~~~i~~~m----~~f~~e~~~~------~~~~e~m~d~~~~~~~~~~  154 (212)
                      .        ....-..++.+...+= ...+..+++++..+=    ..|.++|...      ++-..++ .-++....   
T Consensus        89 ~~~~e~~~~~k~cp~~l~EAvsslIyAa~R~~elpEL~~ir~~l~~KyGkeF~~~a~en~~gVn~kiv-~kLs~~~P---  164 (193)
T 3ggy_A           89 DISTEEQLVKEHMDDGINEAIRSLIYAILFVDEVKELSQLKDLMAWKINVEFVNGVIADHIDVPEKII-KKCSPSVP---  164 (193)
T ss_dssp             TCCSHHHHHHHSSSSSHHHHHHHHHHHGGGCTTCTTHHHHHHHHHHHTCHHHHHHHHHHCTTCCHHHH-HHHSCCCC---
T ss_pred             hhcccccccccCCCHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhCHHHHHHHHhcCCCCCHHHH-HHcCCCCc---
Confidence            3        2222333444333333 333335777776443    3344444432      2222222 22332222   


Q ss_pred             hHHHHHHHHHHHHHHhcchhh
Q 028201          155 AEEETEELTNQVLDEIGVDVA  175 (212)
Q Consensus       155 ~eee~d~~~~~v~~E~~~~~~  175 (212)
                      +.+-++..+..|+.++|++.+
T Consensus       165 ~~elv~~yL~EIA~ey~V~w~  185 (193)
T 3ggy_A          165 KEELVDLYLKEIAKTYDVPYS  185 (193)
T ss_dssp             CHHHHHHHHHHHHHHTTCCHH
T ss_pred             CHHHHHHHHHHHHHHcCCCCC
Confidence            356788999999999998754

>3ggz_E Vacuolar protein-sorting-associated protein 46; novel MIM binding mode, phosphoprotein, coiled coil, endosome, membrane; 3.80A {Saccharomyces cerevisiae}

Probab=94.28  E-value=0.038  Score=30.08  Aligned_cols=18  Identities=39%  Similarity=0.529  Sum_probs=14.9

Q ss_pred             CCCccHHHHHHHHHhhcC
Q 028201          194 ASSSGIDELEKRLAALRN  211 (212)
Q Consensus       194 ~~~~~~~~l~~RL~aLr~  211 (212)
                      ..++.+|.|.+||+|||.
T Consensus        12 ~~eekEDkLAqRLRALR~   29 (29)
T 3ggz_E           12 VDDEKEDKLAQRLRALRG   29 (29)
T ss_pred             ccchhhHHHHHHHHHHcC
Confidence            345678999999999994

>2xze_Q Charged multivesicular BODY protein 3; hydrolase-protein transport complex; 1.75A {Homo sapiens}

Probab=93.99  E-value=0.006  Score=36.06  Aligned_cols=14  Identities=36%  Similarity=0.760  Sum_probs=11.7

Q ss_pred             cHHHHHHHHHhhcC
Q 028201          198 GIDELEKRLAALRN  211 (212)
Q Consensus       198 ~~~~l~~RL~aLr~  211 (212)
                      ++..|+.||+|||+
T Consensus        27 di~~MqsRLaALRS   40 (40)
T 2xze_Q           27 ALEAMQSRLATLRS   40 (40)
T ss_dssp             HHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHhcC
Confidence            34679999999996

>2lxm_B Charged multivesicular BODY protein 5; MIT, protein transport; NMR {Homo sapiens}

Probab=89.92  E-value=0.16  Score=32.31  Aligned_cols=38  Identities=16%  Similarity=0.184  Sum_probs=15.1

Q ss_pred             HHHhhhHHHHHhhhhhhcccchhhHHHHHHHHHHHHHHhcc
Q 028201          132 SAQMDMTTEMMSDTIDDALDNDEAEEETEELTNQVLDEIGV  172 (212)
Q Consensus       132 ~~~~~~~~e~m~d~~~~~~~~~~~eee~d~~~~~v~~E~~~  172 (212)
                      |+..+.|+++++.+++..   +.+|++++++++.+.+|...
T Consensus         1 ~e~a~EIqealsr~~g~~---diDEdEL~aELe~LeqE~~~   38 (57)
T 2lxm_B            1 MEDANEINEALSRSYGTP---ELDEDDLEAELDALGDELLA   38 (57)
T ss_dssp             ---------------CCC---CCCHHHHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHcCCCCCC---CCCHHHHHHHHHHHHHHHhh
Confidence            355678899999887532   34577788888777777643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00