Citrus Sinensis ID: 028280

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-
MDVKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVTEGDQEGARIAALVREIGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVLAIKQPAASPQLRTQTSAATTPDRSSNLDFSLSQIEIDRLEVPDIPPPKIPYRICPNPSAIIWRSRKSRRKGSSRREAHL
ccccEEEEEEcccHHHHHHHHHHHHHccccccEEEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEEccHHHHHHHHHHHHHcccEEEEEccccccEEEEEccccccccccccEEEEEccccccccccccccccccccccccccccccHHHcccccccccccccccccccccccccccccccccccccccccccc
cccEEEEEEEccHHHHHHHHHHHHHHHHccccEEEEEEEcccccccccHHHHHHccHHHHHHHHHHHHHcccccEEEEEEEEEcccccHHHHHHHHHcccEEEEEccccccHHHHHHHHHHHHHHHcccEEEEEEcccccccccccccccccccccccccEEEEEEEEEcccccccccccccccccccccEEEEEccccccccccHHHHcc
MDVKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHvfpslnsrnrKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVTEGDQEGARIAALVREIGASALVVGLHDRSFLHKLAMshndisssfnCRVLaikqpaaspqlrtqtsaattpdrssnldfslsqieidrlevpdipppkipyricpnpsaiiwrsrksrrkgssrreahl
MDVKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLhvfpslnsrnrkkLRLLRLKGYQLALSFKDICNDFFNTNVEIIVTEGDQEGARIAALVREIGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVLAIKQPaaspqlrtqtsaattpdrssnLDFSLSQIEidrlevpdipppkipyricpnpsaiiwrsrksrrkgssrreahl
MdvkkivvivedvdAARAALLWALQNLLRFGDVVTLLHVFPslnsrnrkklrllrlkGYQLALSFKDICNDFFNTNVEIIVTEGDQEGARIAALVREIGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVLAIKQPAASPQLRTQTSAATTPDRSSNLDFSLSQIEIDRLEVPDIPPPKIPYRICPNPSAIIWrsrksrrkgssrrEAHL
****KIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVTEGDQEGARIAALVREIGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVLAI*******************************IEIDRLEVPDIPPPKIPYRICPNPSAIIW*****************
**VKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHV*******************YQLALSFKDICNDFFNTNVEIIVTEGDQEGARIAALVREIGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVLA******************************************************************************
MDVKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVTEGDQEGARIAALVREIGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVLAIKQPA*******************NLDFSLSQIEIDRLEVPDIPPPKIPYRICPNPSAIIWR****************
*DVKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVTEGDQEGARIAALVREIGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVLAIKQPA*******************NLDFSLSQIEIDRLEVPDIPPPKIPYRICPNPSAIIWRSR**************
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MDVKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVTEGDQEGARIAALVREIGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVLAIKQPAASPQLRTQTSAATTPDRSSNLDFSLSQIEIDRLEVPDIPPPKIPYRICPNPSAIIWRSRKSRRKGSSRREAHL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query211
224118866213 predicted protein [Populus trichocarpa] 0.957 0.948 0.754 7e-75
356516902200 PREDICTED: uncharacterized protein LOC10 0.938 0.99 0.686 3e-73
356566068247 PREDICTED: uncharacterized protein LOC10 0.947 0.809 0.679 2e-72
356513896197 PREDICTED: uncharacterized protein LOC10 0.890 0.954 0.603 3e-64
359491416210 PREDICTED: uncharacterized protein LOC10 0.881 0.885 0.680 9e-62
449439683207 PREDICTED: uncharacterized protein LOC10 0.957 0.975 0.591 2e-61
356565236197 PREDICTED: uncharacterized protein LOC10 0.886 0.949 0.601 3e-58
297847168219 universal stress protein family protein 0.928 0.894 0.556 3e-57
21536911219 unknown [Arabidopsis thaliana] 0.938 0.904 0.547 6e-56
18402440219 adenine nucleotide alpha hydrolases-like 0.938 0.904 0.547 7e-56
>gi|224118866|ref|XP_002317926.1| predicted protein [Populus trichocarpa] gi|222858599|gb|EEE96146.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  285 bits (730), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 160/212 (75%), Positives = 184/212 (86%), Gaps = 10/212 (4%)

Query: 1   MDVKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVF-PSLNS-RNRKKLRLLRLKG 58
           MDV+KIVV+VEDVDAAR AL WAL NLLRFGD +TLLHVF P++NS R++ K+RLLRLKG
Sbjct: 1   MDVRKIVVVVEDVDAARTALKWALHNLLRFGDFITLLHVFSPAMNSSRSKNKIRLLRLKG 60

Query: 59  YQLALSFKDICNDFFNTNVEIIVTEGDQEGARIAALVREIGASALVVGLHDRSFLHKLAM 118
           YQLALSFKDICN+FFNTNVEIIVTEGDQEG +IAA+VREIGASALVVGLHDRSFL+KLAM
Sbjct: 61  YQLALSFKDICNNFFNTNVEIIVTEGDQEGGKIAAMVREIGASALVVGLHDRSFLYKLAM 120

Query: 119 SHNDISSSFNCRVLAIKQPAASPQLRT---QTSAATTPDRS-SNLDFSLSQIEIDR-LEV 173
           +HN I++SF+CRVLAIK P   P  R+   + SAA  PD S S++DF  SQIEI R LEV
Sbjct: 121 AHNSIANSFSCRVLAIKPPPL-PLWRSTCARASAARAPDISISSMDF--SQIEIGRPLEV 177

Query: 174 PDIPPPKIPYRICPNPSAIIWRSRKSRRKGSS 205
           PDI PPK+PY+ICP+PSAIIWRSRKS+RKGSS
Sbjct: 178 PDIAPPKVPYKICPDPSAIIWRSRKSKRKGSS 209

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356516902|ref|XP_003527131.1| PREDICTED: uncharacterized protein LOC100778166 [Glycine max] Back     alignment and taxonomy information
>gi|356566068|ref|XP_003551257.1| PREDICTED: uncharacterized protein LOC100817650 [Glycine max] Back     alignment and taxonomy information
>gi|356513896|ref|XP_003525644.1| PREDICTED: uncharacterized protein LOC100801011 [Glycine max] Back     alignment and taxonomy information
>gi|359491416|ref|XP_002275136.2| PREDICTED: uncharacterized protein LOC100249148 [Vitis vinifera] Back     alignment and taxonomy information
>gi|449439683|ref|XP_004137615.1| PREDICTED: uncharacterized protein LOC101206357 [Cucumis sativus] gi|449487033|ref|XP_004157475.1| PREDICTED: uncharacterized LOC101206357 [Cucumis sativus] Back     alignment and taxonomy information
>gi|356565236|ref|XP_003550848.1| PREDICTED: uncharacterized protein LOC100804459 [Glycine max] Back     alignment and taxonomy information
>gi|297847168|ref|XP_002891465.1| universal stress protein family protein [Arabidopsis lyrata subsp. lyrata] gi|297337307|gb|EFH67724.1| universal stress protein family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|21536911|gb|AAM61243.1| unknown [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|18402440|ref|NP_564536.1| adenine nucleotide alpha hydrolases-like protein [Arabidopsis thaliana] gi|51971469|dbj|BAD44399.1| unknown protein [Arabidopsis thaliana] gi|94442497|gb|ABF19036.1| At1g48960 [Arabidopsis thaliana] gi|332194251|gb|AEE32372.1| adenine nucleotide alpha hydrolases-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query211
TAIR|locus:2028516219 AT1G48960 "AT1G48960" [Arabido 0.843 0.812 0.536 3.4e-45
TAIR|locus:2028516 AT1G48960 "AT1G48960" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 475 (172.3 bits), Expect = 3.4e-45, P = 3.4e-45
 Identities = 102/190 (53%), Positives = 130/190 (68%)

Query:    15 AARAALLWALQNLLRFGDVVTLLHVF-PXXXXXXXXXXXXXXXXGYQLALSFKDICNDFF 73
             AAR AL WAL NLLR GDV+ LLHV+ P                GY LALSF++IC+ FF
Sbjct:    16 AARTALQWALHNLLRQGDVIVLLHVYSPPPRKKKSTAARLLRRHGYNLALSFREICDSFF 75

Query:    74 NTNVEIIVTEGDQEGARIAALVREIGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVLA 133
             NTN EIIV EGD +G  IA +V+EIGAS L+VGLH  SFL++ A+S  D++ +FNC+V+A
Sbjct:    76 NTNTEIIVREGDDDGRMIAQVVKEIGASMLLVGLHQNSFLYRWAISGIDVARNFNCKVMA 135

Query:   134 IKQPAA--SPQLRTQ---TSAAT---TPDRSSNLDFSLSQIEIDRLEVPDIPPP-KIPYR 184
             IKQP+   SP ++ +   TS AT   T D  +N DFS  QIEI  L+VP+IP P K+PYR
Sbjct:   136 IKQPSPELSPPVKVKGHKTSKATATATSDCLTNFDFS--QIEISGLQVPEIPTPTKVPYR 193

Query:   185 ICPNPSAIIW 194
             +CP+P AI+W
Sbjct:   194 LCPSPHAILW 203


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.136   0.405    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      211       169   0.00082  108 3  11 22  0.49    31
                                                     31  0.47    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  595 (63 KB)
  Total size of DFA:  147 KB (2089 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  19.38u 0.14s 19.52t   Elapsed:  00:00:01
  Total cpu time:  19.38u 0.14s 19.52t   Elapsed:  00:00:01
  Start:  Mon May 20 15:29:17 2013   End:  Mon May 20 15:29:18 2013
GO:0003674 "molecular_function" evidence=ND
GO:0005575 "cellular_component" evidence=ND
GO:0002238 "response to molecule of fungal origin" evidence=RCA

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query211
cd00293130 cd00293, USP_Like, Usp: Universal stress protein f 2e-11
pfam00582139 pfam00582, Usp, Universal stress protein family 6e-11
cd01989146 cd01989, STK_N, The N-terminal domain of Eukaryoti 1e-08
COG0589154 COG0589, UspA, Universal stress protein UspA and r 1e-04
>gnl|CDD|238182 cd00293, USP_Like, Usp: Universal stress protein family Back     alignment and domain information 
 Score = 58.9 bits (143), Expect = 2e-11
 Identities = 34/112 (30%), Positives = 52/112 (46%), Gaps = 2/112 (1%)

Query: 5   KIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALS 64
           +I+V V+  + +  AL WA +   R G  + LLHV     S   +   LL  +   L  +
Sbjct: 1   RILVAVDGSEESERALRWAARLARRLGAELVLLHVVDPPPSSAAELAELLEEEARALLEA 60

Query: 65  FKDICNDFFNTNVEIIVTEGDQEGARIAALVREIGASALVVGLHDRSFLHKL 116
            ++   +     VE +V EGD   A I     E+GA  +V+G   RS L +L
Sbjct: 61  LREALAE-AGVKVETVVLEGDPAEA-ILEAAEELGADLIVMGSRGRSGLRRL 110

The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity. Length = 130
>gnl|CDD|216006 pfam00582, Usp, Universal stress protein family Back     alignment and domain information
>gnl|CDD|238947 cd01989, STK_N, The N-terminal domain of Eukaryotic Serine Threonine kinases Back     alignment and domain information
>gnl|CDD|223662 COG0589, UspA, Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 211
PRK09982142 universal stress protein UspD; Provisional 99.95
PRK15118144 universal stress global response regulator UspA; P 99.94
PRK15456142 universal stress protein UspG; Provisional 99.94
PRK15005144 universal stress protein F; Provisional 99.94
PRK10116142 universal stress protein UspC; Provisional 99.93
cd01989146 STK_N The N-terminal domain of Eukaryotic Serine T 99.92
PF00582140 Usp: Universal stress protein family; InterPro: IP 99.91
PRK11175305 universal stress protein UspE; Provisional 99.9
cd01988132 Na_H_Antiporter_C The C-terminal domain of a subfa 99.9
cd01987124 USP_OKCHK USP domain is located between the N-term 99.85
PRK11175305 universal stress protein UspE; Provisional 99.83
cd00293130 USP_Like Usp: Universal stress protein family. The 99.8
COG0589154 UspA Universal stress protein UspA and related nuc 99.79
PRK12652 357 putative monovalent cation/H+ antiporter subunit E 99.67
PRK10490 895 sensor protein KdpD; Provisional 99.2
COG2205 890 KdpD Osmosensitive K+ channel histidine kinase [Si 98.89
cd0198486 AANH_like Adenine nucleotide alpha hydrolases supe 98.61
PLN03159 832 cation/H(+) antiporter 15; Provisional 97.44
PLN03159832 cation/H(+) antiporter 15; Provisional 97.22
TIGR02432189 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-t 96.87
PF01171182 ATP_bind_3: PP-loop family; InterPro: IPR011063 Th 96.47
cd01992185 PP-ATPase N-terminal domain of predicted ATPase of 96.19
PRK12342254 hypothetical protein; Provisional 95.36
PRK03359256 putative electron transfer flavoprotein FixA; Revi 95.04
COG2086260 FixA Electron transfer flavoprotein, beta subunit 94.33
cd01993185 Alpha_ANH_like_II This is a subfamily of Adenine n 94.32
PF01012164 ETF: Electron transfer flavoprotein domain; InterP 93.94
PRK10696258 tRNA 2-thiocytidine biosynthesis protein TtcA; Pro 93.38
COG0037298 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle 92.72
TIGR00591 454 phr2 photolyase PhrII. All proteins in this family 92.19
PRK13820 394 argininosuccinate synthase; Provisional 89.91
PF00875165 DNA_photolyase: DNA photolyase from Prosite.; Inte 89.6
TIGR00268252 conserved hypothetical protein TIGR00268. The N-te 89.53
PF00448196 SRP54: SRP54-type protein, GTPase domain; InterPro 87.09
PRK07313182 phosphopantothenoylcysteine decarboxylase; Validat 86.2
PRK05253301 sulfate adenylyltransferase subunit 2; Provisional 86.18
PLN00200 404 argininosuccinate synthase; Provisional 85.44
PRK10660 436 tilS tRNA(Ile)-lysidine synthetase; Provisional 84.51
cd01990202 Alpha_ANH_like_I This is a subfamily of Adenine nu 83.39
PRK05579 399 bifunctional phosphopantothenoylcysteine decarboxy 83.0
TIGR03556 471 photolyase_8HDF deoxyribodipyrimidine photo-lyase, 82.8
cd01986103 Alpha_ANH_like Adenine nucleotide alpha hydrolases 82.54
TIGR02765 429 crypto_DASH cryptochrome, DASH family. Photolyases 81.72
TIGR02113177 coaC_strep phosphopantothenoylcysteine decarboxyla 80.58
KOG1650769 consensus Predicted K+/H+-antiporter [Inorganic io 80.39
>PRK09982 universal stress protein UspD; Provisional Back     alignment and domain information 
Probab=99.95  E-value=1e-26  Score=175.20  Aligned_cols=133  Identities=15%  Similarity=0.208  Sum_probs=104.5

Q ss_pred             CCCCeEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccch-----HHHHHHHHHHHHHHHHHHHHHhhhCCC
Q 028280            1 MDVKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNR-----KKLRLLRLKGYQLALSFKDICNDFFNT   75 (211)
Q Consensus         1 m~~k~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~~~~~~~i   75 (211)
                      |||++||||+|+|+.+..|+++|..+|+..+++|+++||.+..+....     ......+...+...+.+++..+.....
T Consensus         1 ~~~k~ILvavD~S~~s~~al~~A~~lA~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~   80 (142)
T PRK09982          1 MAYKHIGVAISGNEEDALLVNKALELARHNDAHLTLIHIDDGLSELYPGIYFPATEDILQLLKNKSDNKLYKLTKNIQWP   80 (142)
T ss_pred             CCceEEEEEecCCcchHHHHHHHHHHHHHhCCeEEEEEEccCcchhchhhhccchHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            899999999999999999999999999999999999999976432110     111112222222333344444433345


Q ss_pred             cEEEEEeeCCCHHHHHHHHHHHhCCCEEEEecCCCCcccc-cccHHHHHHccCCceEEEEcC
Q 028280           76 NVEIIVTEGDQEGARIAALVREIGASALVVGLHDRSFLHK-LAMSHNDISSSFNCRVLAIKQ  136 (211)
Q Consensus        76 ~~~~~v~~G~~~~~~I~~~a~~~~adLIVmG~~~~~~~~~-~gs~a~~vl~~a~~PVLvV~~  136 (211)
                      .++..+..|+ |++.|+++|++.++||||||+| ++++.+ +| ++++|+++++||||+||.
T Consensus        81 ~~~~~v~~G~-p~~~I~~~A~~~~aDLIVmG~~-~~~~~~~~~-va~~V~~~s~~pVLvv~~  139 (142)
T PRK09982         81 KTKLRIERGE-MPETLLEIMQKEQCDLLVCGHH-HSFINRLMP-AYRGMINKMSADLLIVPF  139 (142)
T ss_pred             cceEEEEecC-HHHHHHHHHHHcCCCEEEEeCC-hhHHHHHHH-HHHHHHhcCCCCEEEecC
Confidence            6788889999 9999999999999999999986 788888 74 999999999999999985

>PRK15118 universal stress global response regulator UspA; Provisional Back     alignment and domain information
>PRK15456 universal stress protein UspG; Provisional Back     alignment and domain information
>PRK15005 universal stress protein F; Provisional Back     alignment and domain information
>PRK10116 universal stress protein UspC; Provisional Back     alignment and domain information
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases Back     alignment and domain information
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents Back     alignment and domain information
>PRK11175 universal stress protein UspE; Provisional Back     alignment and domain information
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea Back     alignment and domain information
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family Back     alignment and domain information
>PRK11175 universal stress protein UspE; Provisional Back     alignment and domain information
>cd00293 USP_Like Usp: Universal stress protein family Back     alignment and domain information
>COG0589 UspA Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms] Back     alignment and domain information
>PRK12652 putative monovalent cation/H+ antiporter subunit E; Reviewed Back     alignment and domain information
>PRK10490 sensor protein KdpD; Provisional Back     alignment and domain information
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF) Back     alignment and domain information
>PLN03159 cation/H(+) antiporter 15; Provisional Back     alignment and domain information
>PLN03159 cation/H(+) antiporter 15; Provisional Back     alignment and domain information
>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain Back     alignment and domain information
>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,] Back     alignment and domain information
>cd01992 PP-ATPase N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning] Back     alignment and domain information
>PRK12342 hypothetical protein; Provisional Back     alignment and domain information
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed Back     alignment and domain information
>COG2086 FixA Electron transfer flavoprotein, beta subunit [Energy production and conversion] Back     alignment and domain information
>cd01993 Alpha_ANH_like_II This is a subfamily of Adenine nucleotide alpha hydrolases superfamily Back     alignment and domain information
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems Back     alignment and domain information
>PRK10696 tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional Back     alignment and domain information
>COG0037 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>TIGR00591 phr2 photolyase PhrII Back     alignment and domain information
>PRK13820 argininosuccinate synthase; Provisional Back     alignment and domain information
>PF00875 DNA_photolyase: DNA photolyase from Prosite Back     alignment and domain information
>TIGR00268 conserved hypothetical protein TIGR00268 Back     alignment and domain information
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] Back     alignment and domain information
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated Back     alignment and domain information
>PRK05253 sulfate adenylyltransferase subunit 2; Provisional Back     alignment and domain information
>PLN00200 argininosuccinate synthase; Provisional Back     alignment and domain information
>PRK10660 tilS tRNA(Ile)-lysidine synthetase; Provisional Back     alignment and domain information
>cd01990 Alpha_ANH_like_I This is a subfamily of Adenine nucleotide alpha hydrolases superfamily Back     alignment and domain information
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated Back     alignment and domain information
>TIGR03556 photolyase_8HDF deoxyribodipyrimidine photo-lyase, 8-HDF type Back     alignment and domain information
>cd01986 Alpha_ANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases and ATP sulphurylases Back     alignment and domain information
>TIGR02765 crypto_DASH cryptochrome, DASH family Back     alignment and domain information
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal Back     alignment and domain information
>KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query211
2gm3_A175 Unknown protein; AT3G01520, putative ethylene-resp 1e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-07
3fg9_A156 Protein of universal stress protein USPA family; A 1e-06
3loq_A294 Universal stress protein; structural genomics, PSI 5e-05
3dlo_A155 Universal stress protein; unknown function, struct 2e-04
1tq8_A163 Hypothetical protein RV1636; MTCY01B2.28, structur 2e-04
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4 Length = 175 Back     alignment and structure
 Score = 48.7 bits (116), Expect = 1e-07
 Identities = 27/140 (19%), Positives = 46/140 (32%), Gaps = 27/140 (19%)

Query: 4   KKIVVIV---------EDVDAARAALLWALQNLLRFGD---VVTLLHVFP---------- 41
            K++V V             + + A  W L+ ++R       + LLHV            
Sbjct: 6   TKVMVAVNASTIKDYPNPSISCKRAFEWTLEKIVRSNTSDFKILLLHVQVVDEDGFDDVD 65

Query: 42  ---SLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVTEGDQEGARIAALVREI 98
              +     R   +  + KG  L   F + C++      E  +  GD     I   V+ +
Sbjct: 66  SIYASPEDFRDMRQSNKAKGLHLLEFFVNKCHE-IGVGCEAWIKTGD-PKDVICQEVKRV 123

Query: 99  GASALVVGLHDRSFLHKLAM 118
               LVVG        K+ +
Sbjct: 124 RPDFLVVGSRGLGRFQKVFV 143
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum} Length = 156 Back     alignment and structure
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus} Length = 294 Back     alignment and structure
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A* Length = 155 Back     alignment and structure
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4 Length = 163 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query211
3s3t_A146 Nucleotide-binding protein, universal stress PROT 99.95
3fg9_A156 Protein of universal stress protein USPA family; A 99.94
1mjh_A162 Protein (ATP-binding domain of protein MJ0577); hy 99.94
2dum_A170 Hypothetical protein PH0823; conserved hypothetica 99.94
3dlo_A155 Universal stress protein; unknown function, struct 99.94
3hgm_A147 Universal stress protein TEAD; rossman fold, signa 99.94
3tnj_A150 Universal stress protein (USP); structural genomic 99.94
2z08_A137 Universal stress protein family; uncharacterized c 99.93
3idf_A138 USP-like protein; universal, stress, PSI, MCSG, st 99.93
1tq8_A163 Hypothetical protein RV1636; MTCY01B2.28, structur 99.93
1jmv_A141 USPA, universal stress protein A; chaperone; 1.85A 99.92
3fdx_A143 Putative filament protein / universal stress PROT; 99.92
2gm3_A175 Unknown protein; AT3G01520, putative ethylene-resp 99.91
3olq_A319 Universal stress protein E; structural genomics, P 99.91
3cis_A309 Uncharacterized protein; alpha/beta hydrolase, ATP 99.9
3loq_A294 Universal stress protein; structural genomics, PSI 99.9
1q77_A138 Hypothetical protein AQ_178; structural genomics, 99.89
3mt0_A290 Uncharacterized protein PA1789; structural genomic 99.89
3ab8_A268 Putative uncharacterized protein TTHA0350; tandem- 99.88
3mt0_A290 Uncharacterized protein PA1789; structural genomic 99.87
3olq_A319 Universal stress protein E; structural genomics, P 99.86
3cis_A309 Uncharacterized protein; alpha/beta hydrolase, ATP 99.85
3loq_A294 Universal stress protein; structural genomics, PSI 99.84
3ab8_A268 Putative uncharacterized protein TTHA0350; tandem- 99.75
2iel_A138 Hypothetical protein TT0030; TT0030,thermus thermo 96.13
1wy5_A317 TILS, hypothetical UPF0072 protein AQ_1887; N-type 94.03
3a2k_A 464 TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, 93.81
3g40_A294 Na-K-CL cotransporter; alpha/beta fold 10-stranded 93.04
3ih5_A217 Electron transfer flavoprotein alpha-subunit; alph 92.02
1efv_B255 Electron transfer flavoprotein; electron transport 91.66
1o97_C264 Electron transferring flavoprotein beta-subunit; F 91.5
2xry_A 482 Deoxyribodipyrimidine photolyase; DNA damage, DNA 91.43
1efp_B252 ETF, protein (electron transfer flavoprotein); ele 91.38
3g40_A294 Na-K-CL cotransporter; alpha/beta fold 10-stranded 89.28
3umv_A 506 Deoxyribodipyrimidine photo-lyase; CPD cyclobutane 88.55
1zun_A325 Sulfate adenylyltransferase subunit 2; beta barrel 86.66
3bl5_A219 Queuosine biosynthesis protein QUEC; PREQ1 biosynt 86.34
3k32_A203 Uncharacterized protein MJ0690; predicted subunit 84.79
2wq7_A 543 RE11660P; lyase-DNA complex, DNA repair, DNA lesio 84.56
2ywx_A157 Phosphoribosylaminoimidazole carboxylase catalyti; 84.42
1iv0_A98 Hypothetical protein; rnaseh-like, YQGF, structura 84.38
2nz2_A 413 Argininosuccinate synthase; amino-acid biosynthesi 84.21
4grd_A173 N5-CAIR mutase, phosphoribosylaminoimidazole carbo 83.71
4b4k_A181 N5-carboxyaminoimidazole ribonucleotide mutase; is 83.67
3p9x_A211 Phosphoribosylglycinamide formyltransferase; struc 82.09
3kuu_A174 Phosphoribosylaminoimidazole carboxylase catalyti 81.71
1xmp_A170 PURE, phosphoribosylaminoimidazole carboxylase; pu 81.7
4ds3_A209 Phosphoribosylglycinamide formyltransferase; struc 81.52
3trh_A169 Phosphoribosylaminoimidazole carboxylase carboxylt 80.75
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0 Back     alignment and structure
Probab=99.95  E-value=3.5e-27  Score=175.92  Aligned_cols=133  Identities=17%  Similarity=0.158  Sum_probs=110.2

Q ss_pred             CCCCeEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccch----H---HHHHHHHHHHHHHHHHHHHHhhhC
Q 028280            1 MDVKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNR----K---KLRLLRLKGYQLALSFKDICNDFF   73 (211)
Q Consensus         1 m~~k~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~----~---~~~~~~~~~~~~~~~l~~~~~~~~   73 (211)
                      |||++||||+|+|+.+..|++||+.+|...+++|+++||.+.......    .   ..+..++..++.++.+.+.+.+ .
T Consensus         3 ~~~~~ILv~~D~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~   81 (146)
T 3s3t_A            3 ARYTNILVPVDSSDAAQAAFTEAVNIAQRHQANLTALYVVDDSAYHTPALDPVLSELLDAEAAHAKDAMRQRQQFVAT-T   81 (146)
T ss_dssp             CCCCEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEEEECCCCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHTT-S
T ss_pred             CccceEEEEcCCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCccccccccccccHHHHHHHHHHHHHHHHHHHHHHHh-c
Confidence            899999999999999999999999999999999999999987543321    1   1122223333444444444443 3


Q ss_pred             CC-cEEEEEeeCCCHHHHHHH-HHHHhCCCEEEEecCCCCcccc--cccHHHHHHccCCceEEEEc
Q 028280           74 NT-NVEIIVTEGDQEGARIAA-LVREIGASALVVGLHDRSFLHK--LAMSHNDISSSFNCRVLAIK  135 (211)
Q Consensus        74 ~i-~~~~~v~~G~~~~~~I~~-~a~~~~adLIVmG~~~~~~~~~--~gs~a~~vl~~a~~PVLvV~  135 (211)
                      |+ ++++.+..|+ +.++|++ ++++.++||||||+++++.+.+  +||++++|+++++|||||||
T Consensus        82 g~~~~~~~~~~g~-~~~~I~~~~a~~~~~dliV~G~~~~~~~~~~~~Gs~~~~vl~~~~~pVlvV~  146 (146)
T 3s3t_A           82 SAPNLKTEISYGI-PKHTIEDYAKQHPEIDLIVLGATGTNSPHRVAVGSTTSYVVDHAPCNVIVIR  146 (146)
T ss_dssp             SCCCCEEEEEEEC-HHHHHHHHHHHSTTCCEEEEESCCSSCTTTCSSCHHHHHHHHHCSSEEEEEC
T ss_pred             CCcceEEEEecCC-hHHHHHHHHHhhcCCCEEEECCCCCCCcceEEEcchHHHHhccCCCCEEEeC
Confidence            78 8999999999 9999999 9999999999999999999887  99999999999999999996
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum} Back     alignment and structure
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4 Back     alignment and structure
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii} Back     alignment and structure
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A* Back     alignment and structure
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0 Back     alignment and structure
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A* Back     alignment and structure
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A Back     alignment and structure
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes} Back     alignment and structure
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4 Back     alignment and structure
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4 Back     alignment and structure
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A* Back     alignment and structure
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4 Back     alignment and structure
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis} Back     alignment and structure
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A* Back     alignment and structure
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus} Back     alignment and structure
>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4 Back     alignment and structure
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa} Back     alignment and structure
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A* Back     alignment and structure
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa} Back     alignment and structure
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis} Back     alignment and structure
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A* Back     alignment and structure
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus} Back     alignment and structure
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A* Back     alignment and structure
>2iel_A Hypothetical protein TT0030; TT0030,thermus thermophilus, structural genomics, PSI, protein structure initiative; 1.60A {Thermus thermophilus} SCOP: c.26.2.4 Back     alignment and structure
>1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase, structural genomics, translation, NPPSFA; 2.42A {Aquifex aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB: 2e21_A* 2e89_A* Back     alignment and structure
>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus} Back     alignment and structure
>3g40_A Na-K-CL cotransporter; alpha/beta fold 10-stranded twisted beta sheet, transport protein; 1.90A {Methanosarcina acetivorans} Back     alignment and structure
>3ih5_A Electron transfer flavoprotein alpha-subunit; alpha-beta-alpha sandwich, structural genomics, PSI-2, protein structure initiative; 2.60A {Bacteroides thetaiotaomicron} Back     alignment and structure
>1efv_B Electron transfer flavoprotein; electron transport, glutaric acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens} SCOP: c.26.2.3 PDB: 1t9g_S* 2a1u_B* 2a1t_S* Back     alignment and structure
>1o97_C Electron transferring flavoprotein beta-subunit; FAD binding; HET: AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP: c.26.2.3 PDB: 1o95_C* 1o96_A* 1o94_C* 3clr_C* 3cls_C* 3clt_C* 3clu_C* Back     alignment and structure
>2xry_A Deoxyribodipyrimidine photolyase; DNA damage, DNA repair; HET: FAD; 1.50A {Methanosarcina mazei} PDB: 2xrz_A* Back     alignment and structure
>1efp_B ETF, protein (electron transfer flavoprotein); electron transport, glutaric acidemia type II; HET: FAD AMP; 2.60A {Paracoccus denitrificans} SCOP: c.26.2.3 Back     alignment and structure
>3g40_A Na-K-CL cotransporter; alpha/beta fold 10-stranded twisted beta sheet, transport protein; 1.90A {Methanosarcina acetivorans} Back     alignment and structure
>3umv_A Deoxyribodipyrimidine photo-lyase; CPD cyclobutane pyrimidine dimers, UV damaged DNA, DNA repai flavoprotein; HET: FAD; 1.71A {Oryza sativa japonica group} Back     alignment and structure
>1zun_A Sulfate adenylyltransferase subunit 2; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae} SCOP: c.26.2.2 Back     alignment and structure
>3bl5_A Queuosine biosynthesis protein QUEC; PREQ1 biosynthesis, RNA modification, tRNA, hydrolase; 2.95A {Bacillus subtilis} Back     alignment and structure
>3k32_A Uncharacterized protein MJ0690; predicted subunit of tRNA methyltransferase, methanocaldococcus jannaschii DSM , PSI- 2; 2.50A {Methanocaldococcus jannaschii} Back     alignment and structure
>2wq7_A RE11660P; lyase-DNA complex, DNA repair, DNA lesion, lyase; HET: TDY Z FAD; 2.00A {Drosophila melanogaster} PDB: 2wb2_A* 2wq6_A* 3cvu_A* 3cvv_A* 3cvy_A* 3cvw_A* 3cvx_A* Back     alignment and structure
>2ywx_A Phosphoribosylaminoimidazole carboxylase catalyti; rossmann fold, structural genomics, NPPSFA; 2.31A {Methanocaldococcus jannaschii} Back     alignment and structure
>1iv0_A Hypothetical protein; rnaseh-like, YQGF, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Thermus thermophilus} SCOP: c.55.3.8 Back     alignment and structure
>2nz2_A Argininosuccinate synthase; amino-acid biosynthesis, aspartate, citrulline, ST genomics, structural genomics consortium, SGC, ligase; HET: CIR; 2.40A {Homo sapiens} Back     alignment and structure
>4grd_A N5-CAIR mutase, phosphoribosylaminoimidazole carboxylase catalyti; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures; 1.85A {Burkholderia cenocepacia} Back     alignment and structure
>4b4k_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase; 2.50A {Bacillus anthracis} Back     alignment and structure
>3p9x_A Phosphoribosylglycinamide formyltransferase; structural genomics, PSI-biology, protein STRU initiative; 1.90A {Bacillus halodurans} Back     alignment and structure
>3kuu_A Phosphoribosylaminoimidazole carboxylase catalyti PURE; 3-layer (ABA) sandwich, rossmann fold, csgid, lyase, structu genomics; 1.41A {Yersinia pestis} SCOP: c.23.8.1 PDB: 1d7a_A* 1qcz_A 2ate_A* 2nsl_A* 2nsh_A* 2nsj_A* Back     alignment and structure
>1xmp_A PURE, phosphoribosylaminoimidazole carboxylase; purine biosynthesis, spine, lyase; 1.80A {Bacillus anthracis} SCOP: c.23.8.1 Back     alignment and structure
>4ds3_A Phosphoribosylglycinamide formyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.85A {Brucella melitensis BV} Back     alignment and structure
>3trh_A Phosphoribosylaminoimidazole carboxylase carboxyltransferase subunit; purines, pyrimidines, nucleosides, nucleotides, lyase; 2.20A {Coxiella burnetii} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 211
d2z3va1135 c.26.2.4 (A:2-136) Hypothetical protein TTHA0895 { 8e-05
d1tq8a_147 c.26.2.4 (A:) Hypothetical protein Rv1636 {Mycobac 9e-05
d1jmva_140 c.26.2.4 (A:) Universal stress protein A, UspA {Ha 9e-05
d2gm3a1171 c.26.2.4 (A:5-175) Putative ethylene-responsive pr 2e-04
d1q77a_138 c.26.2.4 (A:) Hypothetical protein Aq_178 {Aquifex 4e-04
>d2z3va1 c.26.2.4 (A:2-136) Hypothetical protein TTHA0895 {Thermus thermophilus [TaxId: 274]} Length = 135 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: Universal stress protein-like
domain: Hypothetical protein TTHA0895
species: Thermus thermophilus [TaxId: 274]

 Score = 39.1 bits (90), Expect = 8e-05
 Identities = 22/135 (16%), Positives = 45/135 (33%), Gaps = 5/135 (3%)

Query: 4   KKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLR--LLRLKGYQL 61
           K I++  +  + AR A   A       G  + ++H +  +     +      LR +  + 
Sbjct: 2   KTILLAYDGSEHARRAAEVAKAEAEAHGARLIVVHAYEPVPDYLGEPFFEEALRRRLERA 61

Query: 62  ALSFKDICNDFFNTNVEIIVTEGDQEGARIAALVREIGASALVVGLHDRSFLHKLAMSHN 121
               ++          + ++ EG      I    R   A  +V+G      L  L +   
Sbjct: 62  EGVLEEARALTGVPKEDALLLEGV-PAEAILQAARAEKADLIVMGTRGLGALGSLFLGSQ 120

Query: 122 --DISSSFNCRVLAI 134
              + +   C VL +
Sbjct: 121 SQRVVAEAPCPVLLV 135
>d1tq8a_ c.26.2.4 (A:) Hypothetical protein Rv1636 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 147 Back     information, alignment and structure
>d1jmva_ c.26.2.4 (A:) Universal stress protein A, UspA {Haemophilus influenzae [TaxId: 727]} Length = 140 Back     information, alignment and structure
>d2gm3a1 c.26.2.4 (A:5-175) Putative ethylene-responsive protein AT3g01520/F4P13_7 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 171 Back     information, alignment and structure
>d1q77a_ c.26.2.4 (A:) Hypothetical protein Aq_178 {Aquifex aeolicus [TaxId: 63363]} Length = 138 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query211
d1mjha_160 "Hypothetical" protein MJ0577 {Archaeon Methanococ 99.96
d2z3va1135 Hypothetical protein TTHA0895 {Thermus thermophilu 99.95
d1jmva_140 Universal stress protein A, UspA {Haemophilus infl 99.93
d1tq8a_147 Hypothetical protein Rv1636 {Mycobacterium tubercu 99.93
d2gm3a1171 Putative ethylene-responsive protein AT3g01520/F4P 99.92
d1q77a_138 Hypothetical protein Aq_178 {Aquifex aeolicus [Tax 99.9
d1efpb_246 Small, beta subunit of electron transfer flavoprot 95.51
d1wy5a1216 TilS-like protein Aq_1887 {Aquifex aeolicus [TaxId 95.49
d3clsc1262 Small, beta subunit of electron transfer flavoprot 95.3
d1efvb_252 Small, beta subunit of electron transfer flavoprot 91.7
d1np7a2204 Cryptochrome {Synechocystis sp., pcc 6803 [TaxId: 90.25
d1owla2202 DNA photolyase {Synechococcus elongatus [TaxId: 32 90.17
d1ni5a1227 tRNA-Ile-lysidine synthetase, TilS, N-terminal dom 88.93
d2j07a2170 DNA photolyase {Thermus thermophilus [TaxId: 274]} 87.42
d1u11a_159 N5-CAIR mutase (phosphoribosylaminoimidazole carbo 86.81
d1vbka1132 Hypothetical protein PH1313, C-terminal domain {Ar 86.29
d1xmpa_155 N5-CAIR mutase (phosphoribosylaminoimidazole carbo 86.1
d1qcza_163 N5-CAIR mutase (phosphoribosylaminoimidazole carbo 84.09
d2iela1134 Hypothetical protein TTC0031 {Thermus thermophilus 81.49
d1o4va_169 N5-CAIR mutase (phosphoribosylaminoimidazole carbo 80.59
>d1mjha_ c.26.2.4 (A:) "Hypothetical" protein MJ0577 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: Universal stress protein-like
domain: "Hypothetical" protein MJ0577
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.96  E-value=4.5e-29  Score=187.85  Aligned_cols=135  Identities=20%  Similarity=0.199  Sum_probs=109.9

Q ss_pred             CCCCeEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccc-----------------hHHH----HHHHHHHH
Q 028280            1 MDVKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRN-----------------RKKL----RLLRLKGY   59 (211)
Q Consensus         1 m~~k~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~-----------------~~~~----~~~~~~~~   59 (211)
                      ||||+||||+|+|+.++++++||+.+|+..+++|+++||.++.....                 ....    ....+..+
T Consensus         1 ~m~~~ILvavD~s~~s~~al~~a~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (160)
T d1mjha_           1 VMYKKILYPTDFSETAEIALKHVKAFKTLKAEEVILLHVIDEREIKKRDIFSLLLGVAGLNKSVEEFENELKNKLTEEAK   80 (160)
T ss_dssp             CCCCEEEEECCSCHHHHHHHHHHHHTCCSSCCEEEEEEEEEGGGTC-----------------CHHHHHHHHHHHHHHHH
T ss_pred             CCcCeEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEEEecccccccccccccccccccccchhHHHHHHHHHHHHHHHHH
Confidence            89999999999999999999999999999999999999987633210                 0000    11112222


Q ss_pred             HHHHHHHHHHhhhCCCcEEEEEeeCCCHHHHHHHHHHHhCCCEEEEecCCCCcccc--cccHHHHHHccCCceEEEEcCC
Q 028280           60 QLALSFKDICNDFFNTNVEIIVTEGDQEGARIAALVREIGASALVVGLHDRSFLHK--LAMSHNDISSSFNCRVLAIKQP  137 (211)
Q Consensus        60 ~~~~~l~~~~~~~~~i~~~~~v~~G~~~~~~I~~~a~~~~adLIVmG~~~~~~~~~--~gs~a~~vl~~a~~PVLvV~~~  137 (211)
                      +.++.+.+.+.. .|+++++.+..|+ +.+.|++++++.++||||||+++++++.+  +||++++|+++++|||||||++
T Consensus        81 ~~l~~~~~~~~~-~gv~~~~~~~~G~-~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~GS~a~~vl~~s~~pVlvV~~~  158 (160)
T d1mjha_          81 NKMENIKKELED-VGFKVKDIIVVGI-PHEEIVKIAEDEGVDIIIMGSHGKTNLKEILLGSVTENVIKKSNKPVLVVKRK  158 (160)
T ss_dssp             HHHHHHHHHHHH-TTCEEEEEEEEEC-HHHHHHHHHHHTTCSEEEEESCCSSCCTTCSSCHHHHHHHHHCCSCEEEECCC
T ss_pred             HHHHHHHHHHHh-cCCeEEEEEEecc-HHHHHhhhhhccccceEEeccCCCCcccccccCcHHHHHHhcCCCCEEEEcCC
Confidence            333334444443 5899999999999 99999999999999999999999999988  8999999999999999999975
>d2z3va1 c.26.2.4 (A:2-136) Hypothetical protein TTHA0895 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1jmva_ c.26.2.4 (A:) Universal stress protein A, UspA {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1tq8a_ c.26.2.4 (A:) Hypothetical protein Rv1636 {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d2gm3a1 c.26.2.4 (A:5-175) Putative ethylene-responsive protein AT3g01520/F4P13_7 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1q77a_ c.26.2.4 (A:) Hypothetical protein Aq_178 {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1efpb_ c.26.2.3 (B:) Small, beta subunit of electron transfer flavoprotein ETFP {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1wy5a1 c.26.2.5 (A:1-216) TilS-like protein Aq_1887 {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d3clsc1 c.26.2.3 (C:1-262) Small, beta subunit of electron transfer flavoprotein ETFP {Methylophilus methylotrophus [TaxId: 17]} Back     information, alignment and structure
>d1efvb_ c.26.2.3 (B:) Small, beta subunit of electron transfer flavoprotein ETFP {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1np7a2 c.28.1.1 (A:1-204) Cryptochrome {Synechocystis sp., pcc 6803 [TaxId: 1143]} Back     information, alignment and structure
>d1owla2 c.28.1.1 (A:3-204) DNA photolyase {Synechococcus elongatus [TaxId: 32046]} Back     information, alignment and structure
>d1ni5a1 c.26.2.5 (A:0-226) tRNA-Ile-lysidine synthetase, TilS, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2j07a2 c.28.1.1 (A:2-171) DNA photolyase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1u11a_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) {Acetobacter aceti [TaxId: 435]} Back     information, alignment and structure
>d1vbka1 c.26.2.6 (A:176-307) Hypothetical protein PH1313, C-terminal domain {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1xmpa_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) {Bacillus anthracis [TaxId: 1392]} Back     information, alignment and structure
>d1qcza_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2iela1 c.26.2.4 (A:2-135) Hypothetical protein TTC0031 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1o4va_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure