Citrus Sinensis ID: 028300

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-
Protein Sequence
MGSSSGQSNSYDLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIMEVPSLLEEGSNVVKRNILKQKPENQSPPIGGCCS
Secondary Structure (PSIPRED)
cccccccccccEEEEEEEEEccccccHHHHHHHccccccccccccccEEcEEEEEEEccEEEEEEEEEcccccccccccccccccccEEEEEEEccccHHHHHHHHHHHHHHHHHccccccEEEEEEEcccccccccccHHHHHHHHHHHccEEEEccccccccHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccHHEEEEEEEEccccccHHHHHHHHHHcccccccccccEEEEEEEEEEccEEEEEEEEEEcccHHHHHHHHcccccccEEEEEEEcccHHHHHcHHHHHHHHHHHHcccccEEEEEEEEccccHHHccccHHHHHHHHHHHccEEEEcEccccEcHHHHHHHHHHHHHcHHcccccccccccccEEcccccccccccccccc
Coil and Loop (DISEMBL)
mgsssgqsnsydlSFKILLIGDSGVGKSSLLVSFISssvddlsptigvdFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVgnkvdrdservvSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIMEvpslleegsnVVKRNilkqkpenqsppiggccs
Flexible Loop (DISEMBL)
mgsssgqsnsYDLSFKILLIGDSGVGKSSLLVSFISssvddlsptigVDFKIKLLTVAGKRLkltiwdtagqerfrtltssyyrgaQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLvgnkvdrdservVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIMEVPSLLEEGSNVVKRNilkqkpenqsppiggccs
Low Complexity Region (SEG)
MGSSSGQSNSYDLSFKILLIGDSGVGKssllvsfisssvddlsPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIMEVPSLLEEGSNVVKRNILKQKPENQSPPIGGCCS
Disordered region (IsUnstruct)
*********************************************IGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDR****VVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIMEVPSLLE***************************
Disordered Region (DISOPRED)
************LSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKI******************************GGCCS
Disordered Region (DISEMBL)
*********SYDLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVD*********EEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIMEVPSLLEEGSNVVKRNILKQKP************
Disordered Region (DISPRO)
********NSYDLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIMEVPS******************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGSSSGQSNSYDLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIMEVPSLLEEGSNVVKRNILKQKPENQSPPIGGCCS
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	211	2.2.26 [Sep-21-2011]
O49841	210	Ras-related protein RABC2	yes	no	0.995	1.0	0.862	1e-102
O23657	212	Ras-related protein RABC1	no	no	0.938	0.933	0.763	2e-86
Q9SF92	205	Ras-related protein RABC2	no	no	0.966	0.995	0.777	2e-82
P36862	203	GTP-binding protein yptV3	N/A	no	0.943	0.980	0.554	2e-56
Q6DHC1	205	Ras-related protein Rab-1	yes	no	0.924	0.951	0.542	6e-54
Q5ZLG1	206	Ras-related protein Rab-1	yes	no	0.815	0.834	0.582	4e-51
Q5EB77	206	Ras-related protein Rab-1	yes	no	0.905	0.927	0.532	7e-51
P35293	206	Ras-related protein Rab-1	yes	no	0.924	0.946	0.54	7e-51
Q5R5H5	206	Ras-related protein Rab-1	yes	no	0.800	0.820	0.581	2e-50
Q9NP72	206	Ras-related protein Rab-1	yes	no	0.800	0.820	0.581	2e-50

>sp|O49841|RAC2A_ARATH Ras-related protein RABC2a OS=Arabidopsis thaliana GN=RABC2A PE=1 SV=1

 Score =  369 bits (947), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 182/211 (86%), Positives = 196/211 (92%), Gaps = 1/211 (0%)

Query: 1   MGSSSGQSNSYDLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGK 60
           MGSSSGQS  YDLSFKILLIGDSGVGKSSLLVSFISSSV+DL+PTIGVDFKIK LTV GK
Sbjct: 1   MGSSSGQSG-YDLSFKILLIGDSGVGKSSLLVSFISSSVEDLAPTIGVDFKIKQLTVGGK 59

Query: 61  RLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQD 120
           RLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNL DVW KE++LYSTNQ+
Sbjct: 60  RLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLVDVWGKEIELYSTNQE 119

Query: 121 CVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIMEVP 180
           CV+MLVGNKVDR+SER VSREEGIALAKE   +FLECSA+TR+NVEQCFE+LALKIMEVP
Sbjct: 120 CVRMLVGNKVDRESERGVSREEGIALAKELNCMFLECSARTRQNVEQCFEELALKIMEVP 179

Query: 181 SLLEEGSNVVKRNILKQKPENQSPPIGGCCS 211
           SLLEEGS+ VKRNILKQKPE+Q+    GCCS
Sbjct: 180 SLLEEGSSAVKRNILKQKPEHQTNTQSGCCS 210

Intracellular vesicle trafficking and protein transport.
Arabidopsis thaliana (taxid: 3702)

>sp|O23657|RABC1_ARATH Ras-related protein RABC1 OS=Arabidopsis thaliana GN=RABC1 PE=2 SV=1

 Score =  318 bits (815), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 152/199 (76%), Positives = 175/199 (87%), Gaps = 1/199 (0%)

Query: 1   MGSSSGQSNSYDLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGK 60
           MGSSSGQ   +D  FK+LLIGDSGVGKSSLL+SF S++ DDLSPTIGVDFK+K LT+  K
Sbjct: 1   MGSSSGQPE-FDYLFKVLLIGDSGVGKSSLLLSFTSNTFDDLSPTIGVDFKVKYLTIGEK 59

Query: 61  RLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQD 120
           +LKL IWDTAGQERFRTLTSSYYRGAQGII+VYDVTRR+TFTNLSD+WAKE+DLYSTNQD
Sbjct: 60  KLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDIWAKEIDLYSTNQD 119

Query: 121 CVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIMEVP 180
           C+KMLVGNKVD++SER VS++EGI  A+E+G LFLECSAKTR NVEQCFE+L LKI+E P
Sbjct: 120 CIKMLVGNKVDKESERAVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILETP 179

Query: 181 SLLEEGSNVVKRNILKQKP 199
           SL  EGS+  K+NI KQ P
Sbjct: 180 SLTAEGSSGGKKNIFKQNP 198

Intracellular vesicle trafficking and protein transport.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SF92|RAC2B_ARATH Ras-related protein RABC2b OS=Arabidopsis thaliana GN=RABC2B PE=2 SV=1

 Score =  305 bits (781), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 164/211 (77%), Positives = 186/211 (88%), Gaps = 7/211 (3%)

Query: 1   MGSSSGQSNSYDLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGK 60
           MGSSSGQS  YDLSFKILLIGDSGVGKSSLL+SFISSSV+DL+PTIGVDFKIK + V GK
Sbjct: 1   MGSSSGQSG-YDLSFKILLIGDSGVGKSSLLLSFISSSVEDLAPTIGVDFKIKQMKVRGK 59

Query: 61  RLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQD 120
           RLKLTIWDTAGQE+FRTLTSSY+RG+QGIILVYDVT+RETF NL+D+WAKE++LYSTN D
Sbjct: 60  RLKLTIWDTAGQEKFRTLTSSYFRGSQGIILVYDVTKRETFLNLADIWAKEIELYSTNHD 119

Query: 121 CVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIMEVP 180
           C+KMLVGNKVDR+SER VSREEG+ALAK+   LF ECSA+TRENV  CFE+LALKIMEVP
Sbjct: 120 CIKMLVGNKVDRESERKVSREEGMALAKDLNCLFHECSARTRENVNGCFEELALKIMEVP 179

Query: 181 SLLEEGSNVVKRNILKQKPENQSPPIGGCCS 211
           SLLEEGS+ VKR     KP+ ++   G CCS
Sbjct: 180 SLLEEGSSSVKR-----KPDYRAHQ-GRCCS 204

Intracellular vesicle trafficking and protein transport.

Arabidopsis thaliana (taxid: 3702)

>sp|P36862|YPTV3_VOLCA GTP-binding protein yptV3 OS=Volvox carteri GN=YPTV3 PE=3 SV=1

 Score =  218 bits (556), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 112/202 (55%), Positives = 139/202 (68%), Gaps = 3/202 (1%)

Query: 9   NSYDLSFKILLIGDSGVGKSSLLVSFISSSVDD-LSPTIGVDFKIKLLTVAGKRLKLTIW 67
           +S+D +FK+LL+GDSGVGKS +L  F S   ++  + TIGVDFK+K LT  GKR KLTIW
Sbjct: 4   DSHDYTFKVLLVGDSGVGKSCILTRFTSGIFEESTTSTIGVDFKVKYLTADGKRCKLTIW 63

Query: 68  DTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVG 127
           DTAGQERFRTLTSSYYRGAQGII VYDVTRR+TF +L   W +E D+YST +  +KM+V 
Sbjct: 64  DTAGQERFRTLTSSYYRGAQGIIFVYDVTRRDTFESLEANWMREFDIYSTVESAIKMVVA 123

Query: 128 NKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIMEVPSLLEEGS 187
           NKVD  ++R VS EEG   A+ HG LF+E SA+    V Q FE+L LKI++ P LLE  +
Sbjct: 124 NKVDLSAQRQVSSEEGHDFARRHGCLFVETSARANLAVGQAFEELLLKILDTPLLLE--T 181

Query: 188 NVVKRNILKQKPENQSPPIGGC 209
             V    L   P  Q   +  C
Sbjct: 182 TAVGGIKLGAVPTGQQAGVCSC 203

Protein transport. Probably involved in vesicular traffic.

Volvox carteri (taxid: 3067)

>sp|Q6DHC1|RB18B_DANRE Ras-related protein Rab-18-B OS=Danio rerio GN=rab18b PE=2 SV=1

 Score =  210 bits (534), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 108/199 (54%), Positives = 139/199 (69%), Gaps = 4/199 (2%)

Query: 14  SFKILLIGDSGVGKSSLLVSFISSSVD-DLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQ 72
           + KIL+IG+SGVGKSSLL+ F   + D +L+ TIGVDFK+K + + G R KL IWDTAGQ
Sbjct: 8   TLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTIAIDGNRAKLAIWDTAGQ 67

Query: 73  ERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDR 132
           ERFRTLT SYYRGAQG+ILVYDVT+R+TFT L + W  E++ Y T  D VKMLVGNK+D+
Sbjct: 68  ERFRTLTPSYYRGAQGVILVYDVTKRDTFTKLEN-WLNELETYCTRNDLVKMLVGNKIDK 126

Query: 133 DSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIMEVPSLLEEGSNVVKR 192
           D+ R V R EG+  A++H  LF+E SAKTR+ V+  FE+L  KI++ P L E        
Sbjct: 127 DN-REVDRNEGLKFARKHSMLFIEASAKTRDGVQCAFEELVEKILQTPGLWESSIQNHGV 185

Query: 193 NILKQKPENQSPPIGGCCS 211
            +   +P+ Q    GG CS
Sbjct: 186 QLSDNEPQRQG-ACGGYCS 203

Plays a role in apical endocytosis/recycling. May be implicated in transport between the plasma membrane and early endosomes. Plays a key role in eye and brain development and neurodegeneration.

Danio rerio (taxid: 7955)

>sp|Q5ZLG1|RAB18_CHICK Ras-related protein Rab-18 OS=Gallus gallus GN=RAB18 PE=2 SV=1

 Score =  201 bits (510), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 102/175 (58%), Positives = 130/175 (74%), Gaps = 3/175 (1%)

Query: 14  SFKILLIGDSGVGKSSLLVSFISSSVD-DLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQ 72
           + KIL+IG+SGVGKSSLL+ F   + D +L+ TIGVDFK+K ++V G + KL IWDTAGQ
Sbjct: 8   TLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQ 67

Query: 73  ERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDR 132
           ERFRTLT SYYRGAQG+ILVYDVTRR+TF  L D W  E++ Y T  D VKMLVGNK+D+
Sbjct: 68  ERFRTLTPSYYRGAQGVILVYDVTRRDTFVKL-DNWLNELETYCTRNDIVKMLVGNKIDK 126

Query: 133 DSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIMEVPSLLEEGS 187
           ++ R V R EG+  A++H  LF+E SAKT + V+  FE+L  KI++ P L E  S
Sbjct: 127 EN-REVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTPGLWESES 180

Plays a role in apical endocytosis/recycling. May be implicated in transport between the plasma membrane and early endosomes. Plays a key role in eye and brain development and neurodegeneration.

Gallus gallus (taxid: 9031)

>sp|Q5EB77|RAB18_RAT Ras-related protein Rab-18 OS=Rattus norvegicus GN=Rab18 PE=2 SV=1

 Score =  200 bits (508), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 105/197 (53%), Positives = 137/197 (69%), Gaps = 6/197 (3%)

Query: 14  SFKILLIGDSGVGKSSLLVSFISSSVD-DLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQ 72
           + KIL+IG+SGVGKSSLL+ F   + D +L+ TIGVDFK+K ++V G + KL IWDTAGQ
Sbjct: 8   TLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQ 67

Query: 73  ERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDR 132
           ERFRTLT SYYRGAQG+ILVYDVTRR+TF  L D W  E++ Y T  D V MLVGNK+D+
Sbjct: 68  ERFRTLTPSYYRGAQGVILVYDVTRRDTFVKL-DNWLNELETYCTRNDIVNMLVGNKIDK 126

Query: 133 DSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIMEVPSLLEEGSNVVKR 192
           ++ R V R EG+  A++H  LF+E SAKT + V+  FE+L  KI++ P L E  +   + 
Sbjct: 127 EN-REVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTPGLWESEN---QN 182

Query: 193 NILKQKPENQSPPIGGC 209
             +K  P  +S   G C
Sbjct: 183 KGVKLSPREESHGGGAC 199

Plays a role in apical endocytosis/recycling. May be implicated in transport between the plasma membrane and early endosomes. Plays a key role in eye and brain development and neurodegeneration.

Rattus norvegicus (taxid: 10116)

>sp|P35293|RAB18_MOUSE Ras-related protein Rab-18 OS=Mus musculus GN=Rab18 PE=2 SV=2

 Score =  200 bits (508), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 108/200 (54%), Positives = 139/200 (69%), Gaps = 5/200 (2%)

Query: 14  SFKILLIGDSGVGKSSLLVSFISSSVD-DLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQ 72
           + KIL+IG+SGVGKSSLL+ F   + D +L+ TIGVDFK+K ++V G + KL IWDTAGQ
Sbjct: 8   TLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQ 67

Query: 73  ERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDR 132
           ERFRTLT SYYRGAQG+ILVYDVTRR+TF  L D W  E++ Y T  D V MLVGNK+D+
Sbjct: 68  ERFRTLTPSYYRGAQGVILVYDVTRRDTFVKL-DNWLNELETYCTRNDIVNMLVGNKIDK 126

Query: 133 DSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIMEVPSLLEEGSNVVKR 192
           ++ R V R EG+  A++H  LF+E SAKT + V+  FE+L  KI++ P L E   N  K 
Sbjct: 127 EN-REVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTPGLWES-ENQNKG 184

Query: 193 NILKQKPENQ-SPPIGGCCS 211
             L  + E++     GG CS
Sbjct: 185 VKLSHREESRGGGACGGYCS 204

Plays a role in apical endocytosis/recycling. May be implicated in transport between the plasma membrane and early endosomes. Plays a key role in eye and brain development and neurodegeneration.

Mus musculus (taxid: 10090)

>sp|Q5R5H5|RAB18_PONAB Ras-related protein Rab-18 OS=Pongo abelii GN=RAB18 PE=2 SV=1

 Score =  198 bits (504), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 100/172 (58%), Positives = 128/172 (74%), Gaps = 3/172 (1%)

Query: 14  SFKILLIGDSGVGKSSLLVSFISSSVD-DLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQ 72
           + KIL+IG+SGVGKSSLL+ F   + D +L+ TIGVDFK+K ++V G + KL IWDTAGQ
Sbjct: 8   TLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQ 67

Query: 73  ERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDR 132
           ERFRTLT SYYRGAQG+ILVYDVTRR+TF  L D W  E++ Y T  D V MLVGNK+D+
Sbjct: 68  ERFRTLTPSYYRGAQGVILVYDVTRRDTFVKL-DNWLNELETYCTRNDIVNMLVGNKIDK 126

Query: 133 DSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIMEVPSLLE 184
           ++ R V R EG+  A++H  LF+E SAKT + V+  FE+L  KI++ P L E
Sbjct: 127 EN-REVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTPGLWE 177

Plays a role in apical endocytosis/recycling. May be implicated in transport between the plasma membrane and early endosomes. Plays a key role in eye and brain development and neurodegeneration.

Pongo abelii (taxid: 9601)

>sp|Q9NP72|RAB18_HUMAN Ras-related protein Rab-18 OS=Homo sapiens GN=RAB18 PE=1 SV=1

 Score =  198 bits (504), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 100/172 (58%), Positives = 128/172 (74%), Gaps = 3/172 (1%)

Query: 14  SFKILLIGDSGVGKSSLLVSFISSSVD-DLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQ 72
           + KIL+IG+SGVGKSSLL+ F   + D +L+ TIGVDFK+K ++V G + KL IWDTAGQ
Sbjct: 8   TLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQ 67

Query: 73  ERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDR 132
           ERFRTLT SYYRGAQG+ILVYDVTRR+TF  L D W  E++ Y T  D V MLVGNK+D+
Sbjct: 68  ERFRTLTPSYYRGAQGVILVYDVTRRDTFVKL-DNWLNELETYCTRNDIVNMLVGNKIDK 126

Query: 133 DSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIMEVPSLLE 184
           ++ R V R EG+  A++H  LF+E SAKT + V+  FE+L  KI++ P L E
Sbjct: 127 EN-REVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTPGLWE 177

Plays a role in apical endocytosis/recycling. May be implicated in transport between the plasma membrane and early endosomes. Plays a key role in eye and brain development and neurodegeneration.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	211
225441147	211	PREDICTED: ras-related protein RABC2a [V	0.952	0.952	0.915	1e-103
18414255	210	RAB GTPase-C2A [Arabidopsis thaliana] gi	0.995	1.0	0.862	1e-100
224138818	208	predicted protein [Populus trichocarpa]	0.985	1.0	0.857	2e-99
356533295	212	PREDICTED: ras-related protein RABC2a-li	1.0	0.995	0.839	8e-99
224069599	213	predicted protein [Populus trichocarpa]	0.947	0.938	0.871	1e-97
449440149	210	PREDICTED: ras-related protein RABC2a-li	0.990	0.995	0.842	3e-97
255556838	216	protein with unknown function [Ricinus c	0.952	0.930	0.867	5e-97
1370172	208	RAB1X [Lotus japonicus]	0.985	1.0	0.838	6e-97
356505277	211	PREDICTED: ras-related protein RABC2a-li	0.952	0.952	0.860	2e-95
356548355	211	PREDICTED: ras-related protein RABC2a-li	0.952	0.952	0.845	3e-95

>gi|225441147|ref|XP_002267276.1| PREDICTED: ras-related protein RABC2a [Vitis vinifera] gi|297739985|emb|CBI30167.3| unnamed protein product [Vitis vinifera]

 Score =  378 bits (971), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 184/201 (91%), Positives = 191/201 (95%)

Query: 11  YDLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTA 70
           YDLSFKILLIGDS VGKSSLLVSFISSSV+DL+PTIGVDFKIK LTV GKRLKLTIWDTA
Sbjct: 11  YDLSFKILLIGDSAVGKSSLLVSFISSSVEDLAPTIGVDFKIKQLTVGGKRLKLTIWDTA 70

Query: 71  GQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKV 130
           GQERFRTLTSSYYRGAQGIILVYDVTRRE+FTNLSDVWAKEV+LYSTNQDCVKMLVGNKV
Sbjct: 71  GQERFRTLTSSYYRGAQGIILVYDVTRRESFTNLSDVWAKEVELYSTNQDCVKMLVGNKV 130

Query: 131 DRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIMEVPSLLEEGSNVV 190
           DR+SERVVSREEGIALAKEHG LF ECSAKTRENVE+CFE+LALKIMEVPSLLEEGS V 
Sbjct: 131 DRESERVVSREEGIALAKEHGCLFFECSAKTRENVEKCFEELALKIMEVPSLLEEGSTVG 190

Query: 191 KRNILKQKPENQSPPIGGCCS 211
           KRNILK KPENQ PP GGCCS
Sbjct: 191 KRNILKPKPENQPPPTGGCCS 211

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18414255|ref|NP_568121.1| RAB GTPase-C2A [Arabidopsis thaliana] gi|297810433|ref|XP_002873100.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|75098916|sp|O49841.1|RAC2A_ARATH RecName: Full=Ras-related protein RABC2a; Short=AtRABC2a; AltName: Full=Ras-related protein Rab18B; Short=AtRab18B gi|2723477|dbj|BAA24074.1| GTP-binding protein [Arabidopsis thaliana] gi|7378638|emb|CAB83314.1| AtRab GTP-binding protein [Arabidopsis thaliana] gi|26453054|dbj|BAC43603.1| putative AtRab GTP-binding protein [Arabidopsis thaliana] gi|29824251|gb|AAP04086.1| unknown protein [Arabidopsis thaliana] gi|297318937|gb|EFH49359.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|332003236|gb|AED90619.1| RAB GTPase-C2A [Arabidopsis thaliana]

 Score =  369 bits (947), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 182/211 (86%), Positives = 196/211 (92%), Gaps = 1/211 (0%)

Query: 1   MGSSSGQSNSYDLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGK 60
           MGSSSGQS  YDLSFKILLIGDSGVGKSSLLVSFISSSV+DL+PTIGVDFKIK LTV GK
Sbjct: 1   MGSSSGQSG-YDLSFKILLIGDSGVGKSSLLVSFISSSVEDLAPTIGVDFKIKQLTVGGK 59

Query: 61  RLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQD 120
           RLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNL DVW KE++LYSTNQ+
Sbjct: 60  RLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLVDVWGKEIELYSTNQE 119

Query: 121 CVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIMEVP 180
           CV+MLVGNKVDR+SER VSREEGIALAKE   +FLECSA+TR+NVEQCFE+LALKIMEVP
Sbjct: 120 CVRMLVGNKVDRESERGVSREEGIALAKELNCMFLECSARTRQNVEQCFEELALKIMEVP 179

Query: 181 SLLEEGSNVVKRNILKQKPENQSPPIGGCCS 211
           SLLEEGS+ VKRNILKQKPE+Q+    GCCS
Sbjct: 180 SLLEEGSSAVKRNILKQKPEHQTNTQSGCCS 210

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224138818|ref|XP_002322909.1| predicted protein [Populus trichocarpa] gi|222867539|gb|EEF04670.1| predicted protein [Populus trichocarpa]

 Score =  367 bits (941), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 181/211 (85%), Positives = 194/211 (91%), Gaps = 3/211 (1%)

Query: 1   MGSSSGQSNSYDLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGK 60
           MGSSSG   SYDLSFKILLIGDSGVGKSSLLVSFISSSV+DL+PTIGVDFKIK LTV GK
Sbjct: 1   MGSSSG---SYDLSFKILLIGDSGVGKSSLLVSFISSSVEDLAPTIGVDFKIKQLTVGGK 57

Query: 61  RLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQD 120
           RLKLTIWDTAGQERFRTLTSSYYR AQGIILVYDVTRRETFTNLSDVW KEV+L+STNQD
Sbjct: 58  RLKLTIWDTAGQERFRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELFSTNQD 117

Query: 121 CVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIMEVP 180
           CVKMLVGNKVD++S R V+++EG+ALAK+HG LFLECSAKTRENVEQCFE+LALKIMEVP
Sbjct: 118 CVKMLVGNKVDKESGRDVTKDEGMALAKQHGCLFLECSAKTRENVEQCFEELALKIMEVP 177

Query: 181 SLLEEGSNVVKRNILKQKPENQSPPIGGCCS 211
           SLLEEGS  VKRNILKQKPE+     GGCCS
Sbjct: 178 SLLEEGSTAVKRNILKQKPEHHVASNGGCCS 208

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356533295|ref|XP_003535201.1| PREDICTED: ras-related protein RABC2a-like [Glycine max]

 Score =  365 bits (936), Expect = 8e-99,   Method: Compositional matrix adjust.
 Identities = 178/212 (83%), Positives = 196/212 (92%), Gaps = 1/212 (0%)

Query: 1   MGSSSGQSNSYDLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGK 60
           M SSSGQS+ YDLSFKILLIGDS VGKSSLLVSFIS+S +D++PTIGVDFKIK+LTV GK
Sbjct: 1   MNSSSGQSSGYDLSFKILLIGDSAVGKSSLLVSFISNSAEDIAPTIGVDFKIKMLTVGGK 60

Query: 61  RLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQD 120
           RLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRR+TFTNLS+VW+KEV+LYSTNQ+
Sbjct: 61  RLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRDTFTNLSEVWSKEVELYSTNQN 120

Query: 121 CVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIMEVP 180
           CVKMLVGNKVDRDSERVVS+EEG+ALA+E G LF ECSAKTRENVE+CFE+LALKIMEVP
Sbjct: 121 CVKMLVGNKVDRDSERVVSKEEGLALAEELGCLFFECSAKTRENVERCFEELALKIMEVP 180

Query: 181 SLLEEGSNVVKRNILKQKPEN-QSPPIGGCCS 211
           SLLEEGS  VKRNILKQ+ E  Q+   GGCCS
Sbjct: 181 SLLEEGSTAVKRNILKQQQEQPQASEFGGCCS 212

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224069599|ref|XP_002326383.1| predicted protein [Populus trichocarpa] gi|222833576|gb|EEE72053.1| predicted protein [Populus trichocarpa]

 Score =  360 bits (925), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 177/203 (87%), Positives = 189/203 (93%), Gaps = 3/203 (1%)

Query: 11  YDLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTA 70
           YDLSFKILLIGDSGVGKSSLLVSFISSSV+D++PTIGVDFKIK LTV GKRLKLTIWDTA
Sbjct: 12  YDLSFKILLIGDSGVGKSSLLVSFISSSVEDIAPTIGVDFKIKQLTVGGKRLKLTIWDTA 71

Query: 71  GQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKV 130
           GQERFRTLTSSYYR AQGIILVYDVTRRETFTNLSDVW KEVDLYSTNQDCVKMLVGNKV
Sbjct: 72  GQERFRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWTKEVDLYSTNQDCVKMLVGNKV 131

Query: 131 DRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIMEVPSLLEEGSNVV 190
           D+DSER V+R+EG++LAKEHG  FLECSAKTR+NVEQCFE+LALKIMEVPSL+EEGS  V
Sbjct: 132 DKDSERDVTRDEGMSLAKEHGCTFLECSAKTRQNVEQCFEELALKIMEVPSLMEEGSTAV 191

Query: 191 KRNILKQKPENQSPPI--GGCCS 211
           KRNILKQKP +Q PP   GGCCS
Sbjct: 192 KRNILKQKP-DQHPPSSGGGCCS 213

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449440149|ref|XP_004137847.1| PREDICTED: ras-related protein RABC2a-like [Cucumis sativus] gi|449501036|ref|XP_004161260.1| PREDICTED: LOW QUALITY PROTEIN: ras-related protein RABC2a-like [Cucumis sativus]

 Score =  359 bits (922), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 177/210 (84%), Positives = 192/210 (91%), Gaps = 1/210 (0%)

Query: 1   MGSSSGQSNSYDLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGK 60
           MGSSSGQS++YDLSFK+LLIGDSGVGKSSLL+SFIS++ D+L+PTIGVDFKIKLL V GK
Sbjct: 1   MGSSSGQSSNYDLSFKVLLIGDSGVGKSSLLLSFISTNADNLAPTIGVDFKIKLLKVGGK 60

Query: 61  RLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQD 120
           RLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEV+LYSTN+D
Sbjct: 61  RLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVELYSTNKD 120

Query: 121 CVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIMEVP 180
           CVKML+GNKVDR+SER VSREEGIALAK  GS FLECSAKTRENVE+CFE LALKIME P
Sbjct: 121 CVKMLIGNKVDRESERAVSREEGIALAKVLGSYFLECSAKTRENVEKCFEDLALKIMEAP 180

Query: 181 SLLEEGSNVVKRNILKQKPENQSPPIGGCC 210
           SL+EEGS VVKRNILKQ+ E Q      CC
Sbjct: 181 SLIEEGSTVVKRNILKQQ-EFQPASTTSCC 209

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255556838|ref|XP_002519452.1| protein with unknown function [Ricinus communis] gi|223541315|gb|EEF42866.1| protein with unknown function [Ricinus communis]

 Score =  359 bits (921), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 177/204 (86%), Positives = 186/204 (91%), Gaps = 3/204 (1%)

Query: 11  YDLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTA 70
           YDLSFKILLIGDSGVGKSSLLVSFISSSV+DL+PTIGVDFKIK LTV GKRLKLTIWDTA
Sbjct: 13  YDLSFKILLIGDSGVGKSSLLVSFISSSVEDLAPTIGVDFKIKQLTVDGKRLKLTIWDTA 72

Query: 71  GQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKV 130
           GQERFRTLTSSYYR AQGIILVYDVTRRETFTNLSDVWAKEVDLY TN+DCVKMLVGNK+
Sbjct: 73  GQERFRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWAKEVDLYCTNKDCVKMLVGNKL 132

Query: 131 DRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIMEVPSLLEEGSNVV 190
           D DSER VSREEG+ALAKEHG  FLECSAKTRENVE+CFE+LALKIMEVPSLLEEGS  V
Sbjct: 133 DIDSERAVSREEGMALAKEHGCAFLECSAKTRENVEKCFEELALKIMEVPSLLEEGSTAV 192

Query: 191 KRNILKQKPENQSPPI---GGCCS 211
           K+ IL QK ENQ+PP     GCCS
Sbjct: 193 KKKILNQKQENQAPPSRANTGCCS 216

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|1370172|emb|CAA98163.1| RAB1X [Lotus japonicus]

 Score =  358 bits (920), Expect = 6e-97,   Method: Compositional matrix adjust.
 Identities = 177/211 (83%), Positives = 190/211 (90%), Gaps = 3/211 (1%)

Query: 1   MGSSSGQSNSYDLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGK 60
           M SSSG    YDLSFKILLIGDSGVGKSSLLVSFISSSV+D SPTIGVDFKIK+LTV GK
Sbjct: 1   MSSSSG---GYDLSFKILLIGDSGVGKSSLLVSFISSSVEDQSPTIGVDFKIKMLTVGGK 57

Query: 61  RLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQD 120
           RLKLT+WDTAGQERFRTLTSSYYRGAQGIILVYDVT+RETFTNLS+VW+KE++LYS NQD
Sbjct: 58  RLKLTLWDTAGQERFRTLTSSYYRGAQGIILVYDVTKRETFTNLSEVWSKELELYSNNQD 117

Query: 121 CVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIMEVP 180
           CVKMLVGNKVDRD+ R VSREEG+ALAKE G L +ECSAKTRENVEQCFE+LALKIME P
Sbjct: 118 CVKMLVGNKVDRDAARAVSREEGLALAKELGCLLIECSAKTRENVEQCFEELALKIMEAP 177

Query: 181 SLLEEGSNVVKRNILKQKPENQSPPIGGCCS 211
           SLLEEGS  VKRNILKQK E Q+   GGCCS
Sbjct: 178 SLLEEGSTAVKRNILKQKQEPQASQHGGCCS 208

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356505277|ref|XP_003521418.1| PREDICTED: ras-related protein RABC2a-like [Glycine max]

 Score =  353 bits (906), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 173/201 (86%), Positives = 185/201 (92%)

Query: 11  YDLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTA 70
           YDLSFKILLIGDSGVGKSSLLVSFISSSV+DLSPTIGVDFKIK LTV GKRLKLTIWDTA
Sbjct: 11  YDLSFKILLIGDSGVGKSSLLVSFISSSVEDLSPTIGVDFKIKTLTVGGKRLKLTIWDTA 70

Query: 71  GQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKV 130
           GQERFRTL SSYYR AQGIILVYDVTRRETFTNLS+VW+KEV+LYSTNQDCVK+LVGNKV
Sbjct: 71  GQERFRTLNSSYYRKAQGIILVYDVTRRETFTNLSEVWSKEVELYSTNQDCVKILVGNKV 130

Query: 131 DRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIMEVPSLLEEGSNVV 190
           DRD+ER VSREEG+ALAKE G L LECSAKTRENVEQCFE+LALKIME PSLLEEGS  V
Sbjct: 131 DRDTERAVSREEGLALAKELGCLLLECSAKTRENVEQCFEELALKIMEAPSLLEEGSTAV 190

Query: 191 KRNILKQKPENQSPPIGGCCS 211
           KR++LK K E+Q+   GGCCS
Sbjct: 191 KRSVLKPKQESQASQNGGCCS 211

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356548355|ref|XP_003542568.1| PREDICTED: ras-related protein RABC2a-like [Glycine max]

 Score =  353 bits (906), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 170/201 (84%), Positives = 187/201 (93%)

Query: 11  YDLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTA 70
           YDLSFKILLIGDS VGKSSLLVSFIS+S +D++PTIGVDFKIK+LTV GKRLKLTIWDTA
Sbjct: 11  YDLSFKILLIGDSAVGKSSLLVSFISNSAEDIAPTIGVDFKIKMLTVGGKRLKLTIWDTA 70

Query: 71  GQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKV 130
           GQERFRTLTSSYYRGAQGIILVYDVTRR+TFTNLS VW+KEV+LYSTNQ+CVKMLVGNKV
Sbjct: 71  GQERFRTLTSSYYRGAQGIILVYDVTRRDTFTNLSLVWSKEVELYSTNQNCVKMLVGNKV 130

Query: 131 DRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIMEVPSLLEEGSNVV 190
           DRDSERVVS+EEG+ALA+E G LF ECSAKTRENVE+CFE+LALKIMEVPSLLEEGS  V
Sbjct: 131 DRDSERVVSKEEGLALAEELGCLFFECSAKTRENVERCFEELALKIMEVPSLLEEGSTAV 190

Query: 191 KRNILKQKPENQSPPIGGCCS 211
           KRNILKQ+ + Q+   GGCCS
Sbjct: 191 KRNILKQQQQPQASEFGGCCS 211

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	211
TAIR|locus:2831859	210	RABC2A "RAB GTPase homolog C2A	0.995	1.0	0.796	2.1e-84
TAIR|locus:2029167	212	RAB18 "RAB GTPASE HOMOLOG B18"	0.995	0.990	0.683	6.5e-74
TAIR|locus:2085084	205	RABC2b "RAB GTPase homolog C2B	0.966	0.995	0.715	1.1e-73
ZFIN|ZDB-GENE-040801-185	205	rab18b "RAB18B, member RAS onc	0.924	0.951	0.507	5.4e-47
ZFIN|ZDB-GENE-030131-3980	205	rab18a "RAB18A, member RAS onc	0.919	0.946	0.525	6.9e-47
UNIPROTKB|Q5ZLG1	206	RAB18 "Ras-related protein Rab	0.919	0.941	0.517	2.7e-45
UNIPROTKB|Q9NP72	206	RAB18 "Ras-related protein Rab	0.924	0.946	0.51	4.4e-45
UNIPROTKB|Q5R5H5	206	RAB18 "Ras-related protein Rab	0.924	0.946	0.51	4.4e-45
UNIPROTKB|Q0IIG8	206	RAB18 "Ras-related protein Rab	0.924	0.946	0.51	5.6e-45
UNIPROTKB|I3LC07	206	RAB18 "Uncharacterized protein	0.924	0.946	0.51	5.6e-45

TAIR|locus:2831859 RABC2A "RAB GTPase homolog C2A" [Arabidopsis thaliana (taxid:3702)]

 Score = 845 (302.5 bits), Expect = 2.1e-84, P = 2.1e-84
 Identities = 168/211 (79%), Positives = 180/211 (85%)

Query:     1 MGSSSGQSNSYDLSFKILLIGDSGVGKXXXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGK 60
             MGSSSGQS  YDLSFKILLIGDSGVGK                PTIGVDFKIK LTV GK
Sbjct:     1 MGSSSGQSG-YDLSFKILLIGDSGVGKSSLLVSFISSSVEDLAPTIGVDFKIKQLTVGGK 59

Query:    61 RLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQD 120
             RLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNL DVW KE++LYSTNQ+
Sbjct:    60 RLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLVDVWGKEIELYSTNQE 119

Query:   121 CVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIMEVP 180
             CV+MLVGNKVDR+SER VSREEGIALAKE   +FLECSA+TR+NVEQCFE+LALKIMEVP
Sbjct:   120 CVRMLVGNKVDRESERGVSREEGIALAKELNCMFLECSARTRQNVEQCFEELALKIMEVP 179

Query:   181 SLLEEGSNVVKRNILKQKPENQSPPIGGCCS 211
             SLLEEGS+ VKRNILKQKPE+Q+    GCCS
Sbjct:   180 SLLEEGSSAVKRNILKQKPEHQTNTQSGCCS 210

GO:0005524 "ATP binding" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0008134 "transcription factor binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005777 "peroxisome" evidence=IDA

GO:0030742 "GTP-dependent protein binding" evidence=IPI

GO:0080115 "myosin XI tail binding" evidence=IPI

TAIR|locus:2029167 RAB18 "RAB GTPASE HOMOLOG B18" [Arabidopsis thaliana (taxid:3702)]

 Score = 746 (267.7 bits), Expect = 6.5e-74, P = 6.5e-74
 Identities = 145/212 (68%), Positives = 166/212 (78%)

Query:     1 MGSSSGQSNSYDLSFKILLIGDSGVGKXXXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGK 60
             MGSSSGQ   +D  FK+LLIGDSGVGK                PTIGVDFK+K LT+  K
Sbjct:     1 MGSSSGQPE-FDYLFKVLLIGDSGVGKSSLLLSFTSNTFDDLSPTIGVDFKVKYLTIGEK 59

Query:    61 RLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQD 120
             +LKL IWDTAGQERFRTLTSSYYRGAQGII+VYDVTRR+TFTNLSD+WAKE+DLYSTNQD
Sbjct:    60 KLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDIWAKEIDLYSTNQD 119

Query:   121 CVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIMEVP 180
             C+KMLVGNKVD++SER VS++EGI  A+E+G LFLECSAKTR NVEQCFE+L LKI+E P
Sbjct:   120 CIKMLVGNKVDKESERAVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILETP 179

Query:   181 SLLEEGSNVVKRNILKQKP-ENQSPPIGGCCS 211
             SL  EGS+  K+NI KQ P +  S     CCS
Sbjct:   180 SLTAEGSSGGKKNIFKQNPAQTTSTSSSYCCS 211

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2085084 RABC2b "RAB GTPase homolog C2B" [Arabidopsis thaliana (taxid:3702)]

 Score = 744 (267.0 bits), Expect = 1.1e-73, P = 1.1e-73
 Identities = 151/211 (71%), Positives = 170/211 (80%)

Query:     1 MGSSSGQSNSYDLSFKILLIGDSGVGKXXXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGK 60
             MGSSSGQS  YDLSFKILLIGDSGVGK                PTIGVDFKIK + V GK
Sbjct:     1 MGSSSGQSG-YDLSFKILLIGDSGVGKSSLLLSFISSSVEDLAPTIGVDFKIKQMKVRGK 59

Query:    61 RLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQD 120
             RLKLTIWDTAGQE+FRTLTSSY+RG+QGIILVYDVT+RETF NL+D+WAKE++LYSTN D
Sbjct:    60 RLKLTIWDTAGQEKFRTLTSSYFRGSQGIILVYDVTKRETFLNLADIWAKEIELYSTNHD 119

Query:   121 CVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIMEVP 180
             C+KMLVGNKVDR+SER VSREEG+ALAK+   LF ECSA+TRENV  CFE+LALKIMEVP
Sbjct:   120 CIKMLVGNKVDRESERKVSREEGMALAKDLNCLFHECSARTRENVNGCFEELALKIMEVP 179

Query:   181 SLLEEGSNVVKRNILKQKPENQSPPIGGCCS 211
             SLLEEGS+ VKR     KP+ ++   G CCS
Sbjct:   180 SLLEEGSSSVKR-----KPDYRAHQ-GRCCS 204

GO:0005524 "ATP binding" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0008134 "transcription factor binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

ZFIN|ZDB-GENE-040801-185 rab18b "RAB18B, member RAS oncogene family" [Danio rerio (taxid:7955)]

 Score = 492 (178.3 bits), Expect = 5.4e-47, P = 5.4e-47
 Identities = 101/199 (50%), Positives = 128/199 (64%)

Query:    14 SFKILLIGDSGVGKXXXXXXXXXXXXX-XXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQ 72
             + KIL+IG+SGVGK                  TIGVDFK+K + + G R KL IWDTAGQ
Sbjct:     8 TLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTIAIDGNRAKLAIWDTAGQ 67

Query:    73 ERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDR 132
             ERFRTLT SYYRGAQG+ILVYDVT+R+TFT L + W  E++ Y T  D VKMLVGNK+D+
Sbjct:    68 ERFRTLTPSYYRGAQGVILVYDVTKRDTFTKLEN-WLNELETYCTRNDLVKMLVGNKIDK 126

Query:   133 DSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIMEVPSLLEEGSNVVKR 192
             D+ R V R EG+  A++H  LF+E SAKTR+ V+  FE+L  KI++ P L E        
Sbjct:   127 DN-REVDRNEGLKFARKHSMLFIEASAKTRDGVQCAFEELVEKILQTPGLWESSIQNHGV 185

Query:   193 NILKQKPENQSPPIGGCCS 211
              +   +P+ Q    GG CS
Sbjct:   186 QLSDNEPQRQGA-CGGYCS 203

GO:0005525 "GTP binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0007420 "brain development" evidence=IMP

GO:0001654 "eye development" evidence=IMP

GO:0009790 "embryo development" evidence=IMP

GO:0006810 "transport" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

ZFIN|ZDB-GENE-030131-3980 rab18a "RAB18A, member RAS oncogene family" [Danio rerio (taxid:7955)]

 Score = 491 (177.9 bits), Expect = 6.9e-47, P = 6.9e-47
 Identities = 105/200 (52%), Positives = 129/200 (64%)

Query:    14 SFKILLIGDSGVGKXXXXXXXXXXXXXXXX-PTIGVDFKIKLLTVAGKRLKLTIWDTAGQ 72
             + KIL+IG+SGVGK                  TIGVDFK+K L V G R KL IWDTAGQ
Sbjct:     8 TLKILIIGESGVGKSSLLLRFTDDTFDAEIGATIGVDFKVKTLAVDGNRAKLAIWDTAGQ 67

Query:    73 ERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDR 132
             ERFRTLT SYYRGAQG+ILVYDV+RRETF  L D W  E++ Y T  D VKMLVGNK+D+
Sbjct:    68 ERFRTLTPSYYRGAQGVILVYDVSRRETFAKL-DNWLSELETYCTRNDLVKMLVGNKIDK 126

Query:   133 DSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIMEVPSLLEEGSNVVKR 192
             D +R + REEG+  A++H  LF+E SAKTR+ V+  FE+L  KI++ P L E  S    R
Sbjct:   127 D-DREIEREEGLKFARKHSMLFIESSAKTRDGVQCAFEELVEKILQTPGLWE--SMHKSR 183

Query:   193 NI-LKQKPENQSPPIGGCCS 211
              + L +  E+     G  CS
Sbjct:   184 GVALSELSESSQGGCGAYCS 203

GO:0005525 "GTP binding" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0009790 "embryo development" evidence=IMP

GO:0001654 "eye development" evidence=IMP

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|Q5ZLG1 RAB18 "Ras-related protein Rab-18" [Gallus gallus (taxid:9031)]

 Score = 476 (172.6 bits), Expect = 2.7e-45, P = 2.7e-45
 Identities = 104/201 (51%), Positives = 128/201 (63%)

Query:    14 SFKILLIGDSGVGKXXXXXXXXXXXXX-XXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQ 72
             + KIL+IG+SGVGK                  TIGVDFK+K ++V G + KL IWDTAGQ
Sbjct:     8 TLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQ 67

Query:    73 ERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDR 132
             ERFRTLT SYYRGAQG+ILVYDVTRR+TF  L D W  E++ Y T  D VKMLVGNK+D+
Sbjct:    68 ERFRTLTPSYYRGAQGVILVYDVTRRDTFVKL-DNWLNELETYCTRNDIVKMLVGNKIDK 126

Query:   133 DSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIMEVPSLLE-EGSNVVK 191
             ++ R V R EG+  A++H  LF+E SAKT + V+  FE+L  KI++ P L E E  N  K
Sbjct:   127 EN-REVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTPGLWESESQN--K 183

Query:   192 RNILKQKPENQSP-PIGGCCS 211
                L  K E       GG CS
Sbjct:   184 GVKLSNKEEGHGGGACGGYCS 204

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0001654 "eye development" evidence=ISS

GO:0007420 "brain development" evidence=ISS

GO:0019003 "GDP binding" evidence=ISS

UNIPROTKB|Q9NP72 RAB18 "Ras-related protein Rab-18" [Homo sapiens (taxid:9606)]

 Score = 474 (171.9 bits), Expect = 4.4e-45, P = 4.4e-45
 Identities = 102/200 (51%), Positives = 127/200 (63%)

Query:    14 SFKILLIGDSGVGKXXXXXXXXXXXXX-XXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQ 72
             + KIL+IG+SGVGK                  TIGVDFK+K ++V G + KL IWDTAGQ
Sbjct:     8 TLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQ 67

Query:    73 ERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDR 132
             ERFRTLT SYYRGAQG+ILVYDVTRR+TF  L D W  E++ Y T  D V MLVGNK+D+
Sbjct:    68 ERFRTLTPSYYRGAQGVILVYDVTRRDTFVKL-DNWLNELETYCTRNDIVNMLVGNKIDK 126

Query:   133 DSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIMEVPSLLEEGSNVVKR 192
             ++ R V R EG+  A++H  LF+E SAKT + V+  FE+L  KI++ P L E   N  K 
Sbjct:   127 EN-REVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTPGLWES-ENQNKG 184

Query:   193 NILKQKPENQSP-PIGGCCS 211
               L  + E Q     GG CS
Sbjct:   185 VKLSHREEGQGGGACGGYCS 204

GO:0005525 "GTP binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0003924 "GTPase activity" evidence=NAS

GO:0006897 "endocytosis" evidence=NAS

GO:0007264 "small GTPase mediated signal transduction" evidence=NAS

GO:0001654 "eye development" evidence=ISS

GO:0007420 "brain development" evidence=ISS

GO:0019003 "GDP binding" evidence=IDA

GO:0005622 "intracellular" evidence=IDA

GO:0006184 "GTP catabolic process" evidence=NAS

UNIPROTKB|Q5R5H5 RAB18 "Ras-related protein Rab-18" [Pongo abelii (taxid:9601)]

 Score = 474 (171.9 bits), Expect = 4.4e-45, P = 4.4e-45
 Identities = 102/200 (51%), Positives = 127/200 (63%)

Query:    14 SFKILLIGDSGVGKXXXXXXXXXXXXX-XXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQ 72
             + KIL+IG+SGVGK                  TIGVDFK+K ++V G + KL IWDTAGQ
Sbjct:     8 TLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQ 67

Query:    73 ERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDR 132
             ERFRTLT SYYRGAQG+ILVYDVTRR+TF  L D W  E++ Y T  D V MLVGNK+D+
Sbjct:    68 ERFRTLTPSYYRGAQGVILVYDVTRRDTFVKL-DNWLNELETYCTRNDIVNMLVGNKIDK 126

Query:   133 DSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIMEVPSLLEEGSNVVKR 192
             ++ R V R EG+  A++H  LF+E SAKT + V+  FE+L  KI++ P L E   N  K 
Sbjct:   127 EN-REVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTPGLWES-ENQNKG 184

Query:   193 NILKQKPENQSP-PIGGCCS 211
               L  + E Q     GG CS
Sbjct:   185 VKLSHREEGQGGGACGGYCS 204

GO:0001654 "eye development" evidence=ISS

GO:0007420 "brain development" evidence=ISS

GO:0019003 "GDP binding" evidence=ISS

UNIPROTKB|Q0IIG8 RAB18 "Ras-related protein Rab-18" [Bos taurus (taxid:9913)]

 Score = 473 (171.6 bits), Expect = 5.6e-45, P = 5.6e-45
 Identities = 102/200 (51%), Positives = 127/200 (63%)

Query:    14 SFKILLIGDSGVGKXXXXXXXXXXXXX-XXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQ 72
             + KIL+IG+SGVGK                  TIGVDFK+K ++V G + KL IWDTAGQ
Sbjct:     8 TLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQ 67

Query:    73 ERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDR 132
             ERFRTLT SYYRGAQG+ILVYDVTRR+TF  L D W  E++ Y T  D V MLVGNK+D+
Sbjct:    68 ERFRTLTPSYYRGAQGVILVYDVTRRDTFVKL-DNWLNELETYCTRNDIVNMLVGNKIDK 126

Query:   133 DSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIMEVPSLLEEGSNVVKR 192
             ++ R V R EG+  A++H  LF+E SAKT + V+  FE+L  KI++ P L E   N  K 
Sbjct:   127 EN-REVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTPGLWES-ENQNKG 184

Query:   193 NILKQKPENQSP-PIGGCCS 211
               L  + E Q     GG CS
Sbjct:   185 VKLTHREEGQGGGACGGYCS 204

GO:0019003 "GDP binding" evidence=ISS

GO:0007420 "brain development" evidence=ISS

GO:0001654 "eye development" evidence=ISS

GO:0005886 "plasma membrane" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

UNIPROTKB|I3LC07 RAB18 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 473 (171.6 bits), Expect = 5.6e-45, P = 5.6e-45
 Identities = 102/200 (51%), Positives = 127/200 (63%)

Query:    14 SFKILLIGDSGVGKXXXXXXXXXXXXX-XXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQ 72
             + KIL+IG+SGVGK                  TIGVDFK+K ++V G + KL IWDTAGQ
Sbjct:     8 TLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQ 67

Query:    73 ERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDR 132
             ERFRTLT SYYRGAQG+ILVYDVTRR+TF  L D W  E++ Y T  D V MLVGNK+D+
Sbjct:    68 ERFRTLTPSYYRGAQGVILVYDVTRRDTFVKL-DNWLNELETYCTRNDIVNMLVGNKIDK 126

Query:   133 DSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIMEVPSLLEEGSNVVKR 192
             ++ R V R EG+  A++H  LF+E SAKT + V+  FE+L  KI++ P L E   N  K 
Sbjct:   127 EN-REVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTPGLWES-ENQNKG 184

Query:   193 NILKQKPENQSP-PIGGCCS 211
               L  + E Q     GG CS
Sbjct:   185 VKLTHREEGQGGGACGGYCS 204

GO:0005622 "intracellular" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q05976	RB18A_LYMST	No assigned EC number	0.5300	0.8436	0.8811	N/A	no
Q5ZLG1	RAB18_CHICK	No assigned EC number	0.5828	0.8151	0.8349	yes	no
O49841	RAC2A_ARATH	No assigned EC number	0.8625	0.9952	1.0	yes	no
Q9TVU5	RAB1_THEPA	No assigned EC number	0.4568	0.8957	0.8590	yes	no
Q5EB77	RAB18_RAT	No assigned EC number	0.5329	0.9052	0.9271	yes	no
Q8MXS1	RAB18_CAEEL	No assigned EC number	0.5414	0.8436	0.8768	yes	no
P07560	SEC4_YEAST	No assigned EC number	0.55	0.8056	0.7906	yes	no
O42819	SEC4_CANGA	No assigned EC number	0.5586	0.8009	0.7860	yes	no
Q0IIG8	RAB18_BOVIN	No assigned EC number	0.5813	0.8009	0.8203	yes	no
Q54GY8	RAB18_DICDI	No assigned EC number	0.5024	0.9336	0.9752	yes	no
Q9SF92	RAC2B_ARATH	No assigned EC number	0.7772	0.9668	0.9951	no	no
P36862	YPTV3_VOLCA	No assigned EC number	0.5544	0.9431	0.9802	N/A	no
Q6DHC1	RB18B_DANRE	No assigned EC number	0.5427	0.9241	0.9512	yes	no
Q9NP72	RAB18_HUMAN	No assigned EC number	0.5813	0.8009	0.8203	yes	no
O23657	RABC1_ARATH	No assigned EC number	0.7638	0.9383	0.9339	no	no
P35293	RAB18_MOUSE	No assigned EC number	0.54	0.9241	0.9466	yes	no
Q5R5H5	RAB18_PONAB	No assigned EC number	0.5813	0.8009	0.8203	yes	no
P41924	RYL1_YARLI	No assigned EC number	0.5168	0.8009	0.8325	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	211
PLN03118	211	PLN03118, PLN03118, Rab family protein; Provisiona	1e-145
cd01863	161	cd01863, Rab18, Rab GTPase family 18 (Rab18)	3e-98
smart00175	164	smart00175, RAB, Rab subfamily of small GTPases	3e-91
cd00154	159	cd00154, Rab, Ras-related in brain (Rab) family of	1e-80
pfam00071	162	pfam00071, Ras, Ras family	9e-78
cd01867	167	cd01867, Rab8_Rab10_Rab13_like, Rab GTPase familie	1e-76
cd01869	166	cd01869, Rab1_Ypt1, Rab GTPase family 1 includes t	5e-71
cd01866	168	cd01866, Rab2, Rab GTPase family 2 (Rab2)	2e-63
cd01868	165	cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-	3e-63
cd01860	163	cd01860, Rab5_related, Rab-related GTPase family i	7e-59
cd04122	166	cd04122, Rab14, Rab GTPase family 14 (Rab14)	2e-58
PLN03108	210	PLN03108, PLN03108, Rab family protein; Provisiona	2e-56
cd04111	211	cd04111, Rab39, Rab GTPase family 39 (Rab39)	4e-56
cd01864	165	cd01864, Rab19, Rab GTPase family 19 (Rab19)	3e-55
cd01861	161	cd01861, Rab6, Rab GTPase family 6 (Rab6)	1e-53
cd04114	169	cd04114, Rab30, Rab GTPase family 30 (Rab30)	1e-52
cd04112	191	cd04112, Rab26, Rab GTPase family 26 (Rab26)	2e-52
cd04113	161	cd04113, Rab4, Rab GTPase family 4 (Rab4)	4e-52
cd04110	199	cd04110, Rab35, Rab GTPase family 35 (Rab35)	5e-50
cd01865	165	cd01865, Rab3, Rab GTPase family 3 contains Rab3A,	4e-49
cd04123	162	cd04123, Rab21, Rab GTPase family 21 (Rab21)	5e-48
PLN03110	216	PLN03110, PLN03110, Rab GTPase; Provisional	6e-48
cd04120	202	cd04120, Rab12, Rab GTPase family 12 (Rab12)	2e-46
cd01862	172	cd01862, Rab7, Rab GTPase family 7 (Rab7)	3e-46
cd00876	160	cd00876, Ras, Rat sarcoma (Ras) family of small gu	8e-45
smart00173	164	smart00173, RAS, Ras subfamily of RAS small GTPase	9e-45
smart00010	166	smart00010, small_GTPase, Small GTPase of the Ras	2e-44
cd04117	164	cd04117, Rab15, Rab GTPase family 15 (Rab15)	9e-44
cd04115	170	cd04115, Rab33B_Rab33A, Rab GTPase family 33 inclu	2e-40
cd04107	201	cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab1	4e-39
cd04127	180	cd04127, Rab27A, Rab GTPase family 27a (Rab27a)	3e-38
cd04119	168	cd04119, RJL, Rab GTPase family J-like (RabJ-like)	3e-37
cd04145	164	cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3	5e-37
COG1100	219	COG1100, COG1100, GTPase SAR1 and related small G	1e-36
cd04137	180	cd04137, RheB, Ras Homolog Enriched in Brain (RheB	3e-36
cd00157	171	cd00157, Rho, Ras homology family (Rho) of small g	1e-35
cd04121	189	cd04121, Rab40, Rab GTPase family 40 (Rab40) conta	3e-35
cd04116	170	cd04116, Rab9, Rab GTPase family 9 (Rab9)	5e-35
cd04144	190	cd04144, Ras2, Rat sarcoma (Ras) family 2 of small	1e-32
cd04175	164	cd04175, Rap1, Rap1 family GTPase consists of Rap1	2e-32
cd04139	163	cd04139, RalA_RalB, Ral (Ras-like) family containi	2e-31
PTZ00369	189	PTZ00369, PTZ00369, Ras-like protein; Provisional	3e-31
cd04138	162	cd04138, H_N_K_Ras_like, Ras GTPase family contain	4e-31
smart00174	174	smart00174, RHO, Rho (Ras homology) subfamily of R	5e-31
cd04132	197	cd04132, Rho4_like, Ras homology family 4 (Rho4) o	6e-31
cd04136	164	cd04136, Rap_like, Rap-like family consists of Rap	7e-31
cd04176	163	cd04176, Rap2, Rap2 family GTPase consists of Rap2	1e-30
cd04106	162	cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-	4e-30
PTZ00099	176	PTZ00099, PTZ00099, rab6; Provisional	7e-30
cd04124	161	cd04124, RabL2, Rab GTPase-like family 2 (Rab-like	1e-29
cd04177	168	cd04177, RSR1, RSR1/Bud1p family GTPase	1e-28
cd04141	172	cd04141, Rit_Rin_Ric, Ras-like protein in all tiss	3e-28
cd04109	213	cd04109, Rab28, Rab GTPase family 28 (Rab28)	8e-28
cd04108	170	cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab3	9e-28
cd04126	220	cd04126, Rab20, Rab GTPase family 20 (Rab20)	1e-27
cd00882	161	cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s	2e-27
cd04118	193	cd04118, Rab24, Rab GTPase family 24 (Rab24)	2e-27
cd00877	166	cd00877, Ran, Ras-related nuclear proteins (Ran)/T	5e-27
PLN03071	219	PLN03071, PLN03071, GTP-binding nuclear protein Ra	5e-26
cd04101	167	cd04101, RabL4, Rab GTPase-like family 4 (Rab-like	2e-25
cd04146	166	cd04146, RERG_RasL11_like, Ras-related and Estroge	2e-24
cd04140	165	cd04140, ARHI_like, A Ras homolog member I (ARHI)	4e-24
cd04130	173	cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (W	5e-24
TIGR00231	162	TIGR00231, small_GTP, small GTP-binding protein do	3e-23
PTZ00132	215	PTZ00132, PTZ00132, GTP-binding nuclear protein Ra	4e-23
cd00878	158	cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf	4e-22
cd04134	185	cd04134, Rho3, Ras homology family 3 (Rho3) of sma	1e-21
cd01870	175	cd01870, RhoA_like, Ras homology family A (RhoA)-l	2e-21
cd04148	219	cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfam	3e-21
cd04128	182	cd04128, Spg1, Septum-promoting GTPase (Spg1)	1e-20
smart00176	200	smart00176, RAN, Ran (Ras-related nuclear proteins	1e-19
cd04133	173	cd04133, Rop_like, Rho-related protein from plants	6e-19
cd04131	176	cd04131, Rnd, Rho family GTPase subfamily Rnd incl	4e-18
cd01871	174	cd01871, Rac1_like, Ras-related C3 botulinum toxin	5e-18
cd04135	174	cd04135, Tc10, Rho GTPase TC10 (Tc10)	6e-18
cd04129	190	cd04129, Rho2, Ras homology family 2 (Rho2) of sma	5e-17
cd01893	168	cd01893, Miro1, Mitochondrial Rho family 1 (Miro1)	5e-17
cd01875	191	cd01875, RhoG, Ras homolog family, member G (RhoG)	1e-16
pfam08477	116	pfam08477, Miro, Miro-like protein	4e-16
cd04143	247	cd04143, Rhes_like, Ras homolog enriched in striat	5e-16
cd01874	175	cd01874, Cdc42, cell division cycle 42 (Cdc42) is	7e-16
cd04172	182	cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases	2e-15
pfam00025	174	pfam00025, Arf, ADP-ribosylation factor family	8e-15
PLN00023	334	PLN00023, PLN00023, GTP-binding protein; Provision	7e-14
cd04153	174	cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8)	1e-12
cd04147	197	cd04147, Ras_dva, Ras - dorsal-ventral anterior lo	2e-12
smart00177	175	smart00177, ARF, ARF-like small GTPases; ARF, ADP-	2e-12
cd04173	221	cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases	3e-12
cd04102	204	cd04102, RabL3, Rab GTPase-like family 3 (Rab-like	1e-11
cd04174	232	cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases	3e-11
cd04150	159	cd04150, Arf1_5_like, ADP-ribosylation factor-1 (A	5e-11
cd04159	159	cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl	9e-11
PTZ00133	182	PTZ00133, PTZ00133, ADP-ribosylation factor; Provi	1e-10
PLN00223	181	PLN00223, PLN00223, ADP-ribosylation factor; Provi	4e-10
cd04149	168	cd04149, Arf6, ADP ribosylation factor 6 (Arf6)	8e-10
cd04158	169	cd04158, ARD1, (ADP-ribosylation factor domain pro	8e-10
cd04156	160	cd04156, ARLTS1, Arf-like tumor suppressor gene 1	9e-10
cd04154	173	cd04154, Arl2, Arf-like 2 (Arl2) GTPase	3e-09
cd04151	158	cd04151, Arl1, ADP ribosylation factor 1 (Arf1)	3e-09
cd04155	174	cd04155, Arl3, Arf-like 3 (Arl3) GTPase	1e-08
cd04152	183	cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7)	2e-08
COG2229	187	COG2229, COG2229, Predicted GTPase [General functi	2e-08
cd04160	168	cd04160, Arfrp1, Arf-related protein 1 (Arfrp1)	3e-08
cd09914	161	cd09914, RocCOR, Ras of complex proteins (Roc) C-t	3e-07
cd04142	198	cd04142, RRP22, Ras-related protein on chromosome	4e-07
cd00879	191	cd00879, Sar1, Sar1 is an essential component of C	3e-06
cd04162	164	cd04162, Arl9_Arfrp2_like, Arf-like 9 (Arl9)/Arfrp	4e-06
cd04157	162	cd04157, Arl6, Arf-like 6 (Arl6) GTPase	6e-06
cd00880	161	cd00880, Era_like, E	3e-05
COG0486	454	COG0486, ThdF, Predicted GTPase [General function	5e-05
cd11384	286	cd11384, RagA_like, Rag GTPase, subfamily of Ras-r	2e-04
cd01892	180	cd01892, Miro2, Mitochondrial Rho family 2 (Miro2)	2e-04
cd04103	158	cd04103, Centaurin_gamma, Centaurin gamma (CENTG)	0.001
cd01850	275	cd01850, CDC_Septin, CDC/Septin GTPase family	0.002
cd04161	167	cd04161, Arl2l1_Arl13_like, Arl2-like protein 1 (A	0.002
pfam04670	230	pfam04670, Gtr1_RagA, Gtr1/RagA G protein conserve	0.002
pfam00009	184	pfam00009, GTP_EFTU, Elongation factor Tu GTP bind	0.004

>gnl|CDD|215587 PLN03118, PLN03118, Rab family protein; Provisional

 Score =  401 bits (1031), Expect = e-145
 Identities = 192/211 (90%), Positives = 200/211 (94%)

Query: 1   MGSSSGQSNSYDLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGK 60
           MGSSSGQS+ YDLSFKILLIGDSGVGKSSLLVSFISSSV+DL+PTIGVDFKIK LTV GK
Sbjct: 1   MGSSSGQSSGYDLSFKILLIGDSGVGKSSLLVSFISSSVEDLAPTIGVDFKIKQLTVGGK 60

Query: 61  RLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQD 120
           RLKLTIWDTAGQERFRTLTSSYYR AQGIILVYDVTRRETFTNLSDVW KEV+LYSTNQD
Sbjct: 61  RLKLTIWDTAGQERFRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQD 120

Query: 121 CVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIMEVP 180
           CVKMLVGNKVDR+SER VSREEG+ALAKEHG LFLECSAKTRENVEQCFE+LALKIMEVP
Sbjct: 121 CVKMLVGNKVDRESERDVSREEGMALAKEHGCLFLECSAKTRENVEQCFEELALKIMEVP 180

Query: 181 SLLEEGSNVVKRNILKQKPENQSPPIGGCCS 211
           SLLEEGS  VKRNILKQKPE+Q PP GGCCS
Sbjct: 181 SLLEEGSTAVKRNILKQKPEHQPPPNGGCCS 211

Length = 211

>gnl|CDD|206656 cd01863, Rab18, Rab GTPase family 18 (Rab18)

 Score =  281 bits (722), Expect = 3e-98
 Identities = 112/163 (68%), Positives = 129/163 (79%), Gaps = 3/163 (1%)

Query: 15  FKILLIGDSGVGKSSLLVSFISSSVD-DLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQE 73
            KILLIGDSGVGKSSLL+ F   + D DLS TIGVDFK+K +TV GK++KL IWDTAGQE
Sbjct: 1   LKILLIGDSGVGKSSLLLRFTDDTFDEDLSSTIGVDFKVKTVTVDGKKVKLAIWDTAGQE 60

Query: 74  RFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRD 133
           RFRTLTSSYYRGAQG+ILVYDVTRR+TF NL D W  E+D YSTN D VKMLVGNK+D+ 
Sbjct: 61  RFRTLTSSYYRGAQGVILVYDVTRRDTFDNL-DTWLNELDTYSTNPDAVKMLVGNKIDK- 118

Query: 134 SERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKI 176
             R V+REEG   A++H  LF+E SAKTR  V+Q FE+L  KI
Sbjct: 119 ENREVTREEGQKFARKHNMLFIETSAKTRIGVQQAFEELVEKI 161

Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|197555 smart00175, RAB, Rab subfamily of small GTPases

 Score =  264 bits (677), Expect = 3e-91
 Identities = 98/164 (59%), Positives = 119/164 (72%), Gaps = 3/164 (1%)

Query: 15  FKILLIGDSGVGKSSLLVSFISSSVDDLS-PTIGVDFKIKLLTVAGKRLKLTIWDTAGQE 73
           FKI+LIGDSGVGKSSLL  F      +    TIGVDFK K + V GKR+KL IWDTAGQE
Sbjct: 1   FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQE 60

Query: 74  RFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRD 133
           RFR++TSSYYRGA G +LVYD+T RE+F NL + W KE+  Y+ + + V MLVGNK D +
Sbjct: 61  RFRSITSSYYRGAVGALLVYDITNRESFENLEN-WLKELREYA-SPNVVIMLVGNKSDLE 118

Query: 134 SERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIM 177
            +R VSREE  A A+EHG  F E SAKT  NVE+ FE+LA +I+
Sbjct: 119 EQRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELAREIL 162

Rab GTPases are implicated in vesicle trafficking. Length = 164

>gnl|CDD|206640 cd00154, Rab, Ras-related in brain (Rab) family of small guanosine triphosphatases (GTPases)

 Score =  237 bits (607), Expect = 1e-80
 Identities = 94/160 (58%), Positives = 115/160 (71%), Gaps = 3/160 (1%)

Query: 15  FKILLIGDSGVGKSSLLVSFISSS-VDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQE 73
           FKI+LIGDSGVGK+SLL+ F+ +   ++   TIGVDFK K + V GK++KL IWDTAGQE
Sbjct: 1   FKIVLIGDSGVGKTSLLLRFVDNKFSENYKSTIGVDFKSKTIEVDGKKVKLQIWDTAGQE 60

Query: 74  RFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRD 133
           RFR++TSSYYRGA G ILVYDVT RE+F NL   W  E+  Y+   +   +LVGNK D +
Sbjct: 61  RFRSITSSYYRGAHGAILVYDVTNRESFENLDK-WLNELKEYA-PPNIPIILVGNKSDLE 118

Query: 134 SERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLA 173
            ER VS EE    AKE+G LF E SAKT ENV++ FE LA
Sbjct: 119 DERQVSTEEAQQFAKENGLLFFETSAKTGENVDEAFESLA 158

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which mask C-terminal lipid binding and promote cytosolic localization. While most unicellular organisms possess 5-20 Rab members, several have been found to possess 60 or more Rabs; for many of these Rab isoforms, homologous proteins are not found in other organisms. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Since crystal structures often lack C-terminal residues, the lipid modification site is not available for annotation in many of the CDs in the hierarchy, but is included where possible. Length = 159

>gnl|CDD|215692 pfam00071, Ras, Ras family

 Score =  230 bits (588), Expect = 9e-78
 Identities = 89/164 (54%), Positives = 117/164 (71%), Gaps = 3/164 (1%)

Query: 16  KILLIGDSGVGKSSLLVSFISSS-VDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER 74
           K++L+GD GVGKSSLL+ F  +   ++  PTIGVDF  K + V GK +KL IWDTAGQER
Sbjct: 1   KLVLVGDGGVGKSSLLIRFTQNKFPEEYIPTIGVDFYTKTIEVDGKTVKLQIWDTAGQER 60

Query: 75  FRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDS 134
           FR L   YYRGAQG +LVYD+T R++F N+   W +E+  ++   +   +LVGNK D + 
Sbjct: 61  FRALRPLYYRGAQGFLLVYDITSRDSFENVKK-WLEEILRHADE-NVPIVLVGNKCDLED 118

Query: 135 ERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIME 178
           +RVVS EEG ALAKE G  F+E SAKT ENVE+ FE+LA +I++
Sbjct: 119 QRVVSTEEGEALAKELGLPFMETSAKTNENVEEAFEELAREILK 162

Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025, pfam00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices. Length = 162

>gnl|CDD|206659 cd01867, Rab8_Rab10_Rab13_like, Rab GTPase families 8, 10, 13 (Rab8, Rab10, Rab13)

 Score =  227 bits (580), Expect = 1e-76
 Identities = 93/168 (55%), Positives = 123/168 (73%), Gaps = 3/168 (1%)

Query: 12  DLSFKILLIGDSGVGKSSLLVSFISSS-VDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTA 70
           D  FK+LLIGDSGVGKS LL+ F   S       TIG+DFKI+ + + GK++KL IWDTA
Sbjct: 1   DYLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTA 60

Query: 71  GQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKV 130
           GQERFRT+T+SYYRGA GIILVYD+T  ++F N+ + W + +D ++ ++D  +MLVGNK 
Sbjct: 61  GQERFRTITTSYYRGAMGIILVYDITDEKSFENIKN-WMRNIDEHA-SEDVERMLVGNKC 118

Query: 131 DRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIME 178
           D + +RVVS+EEG ALA+E+G  FLE SAK   NVE+ F  LA  I++
Sbjct: 119 DMEEKRVVSKEEGEALAREYGIKFLETSAKANINVEEAFLTLAKDILK 166

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 167

>gnl|CDD|206661 cd01869, Rab1_Ypt1, Rab GTPase family 1 includes the yeast homolog Ypt1

 Score =  212 bits (543), Expect = 5e-71
 Identities = 88/165 (53%), Positives = 113/165 (68%), Gaps = 3/165 (1%)

Query: 15  FKILLIGDSGVGKSSLLVSFI-SSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQE 73
           FK+LLIGDSGVGKS LL+ F   +  +    TIGVDFKI+ + + GK +KL IWDTAGQE
Sbjct: 3   FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTVKLQIWDTAGQE 62

Query: 74  RFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRD 133
           RFRT+TSSYYRGA GII+VYDVT +E+F N+   W +E+D Y  +++  K+LVGNK D  
Sbjct: 63  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQ-WLQEIDRY-ASENVNKLLVGNKCDLT 120

Query: 134 SERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIME 178
            ++VV   E    A E G  FLE SAK   NVE+ F  +A +I +
Sbjct: 121 DKKVVDYTEAKEFADELGIPFLETSAKNATNVEEAFMTMAREIKK 165

Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|206658 cd01866, Rab2, Rab GTPase family 2 (Rab2)

 Score =  194 bits (494), Expect = 2e-63
 Identities = 89/171 (52%), Positives = 118/171 (69%), Gaps = 7/171 (4%)

Query: 11  YDLSFKILLIGDSGVGKSSLLVSFISS---SVDDLSPTIGVDFKIKLLTVAGKRLKLTIW 67
           Y   FK ++IGD+GVGKS LL+ F       V DL  TIGV+F  +++T+ GK++KL IW
Sbjct: 1   YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDL--TIGVEFGARMITIDGKQIKLQIW 58

Query: 68  DTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVG 127
           DTAGQE FR++T SYYRGA G +LVYD+TRRETF +L+  W ++   +S N +   ML+G
Sbjct: 59  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLT-SWLEDARQHS-NSNMTIMLIG 116

Query: 128 NKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIME 178
           NK D +S R VS EEG A A+EHG +F+E SAKT  NVE+ F   A +I +
Sbjct: 117 NKCDLESRREVSYEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYD 167

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 168

>gnl|CDD|206660 cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-like includes Rab11a, Rab11b, and Rab25

 Score =  193 bits (492), Expect = 3e-63
 Identities = 81/166 (48%), Positives = 111/166 (66%), Gaps = 3/166 (1%)

Query: 12  DLSFKILLIGDSGVGKSSLLVSFISSSVDDLS-PTIGVDFKIKLLTVAGKRLKLTIWDTA 70
           D  FKI+LIGDSGVGKS+LL  F  +  +  S  TIGV+F  + + + GK +K  IWDTA
Sbjct: 1   DYLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRTIQIDGKTIKAQIWDTA 60

Query: 71  GQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKV 130
           GQER+R +TS+YYRGA G +LVYD+T++ TF N+ + W KE+  ++ + + V MLVGNK 
Sbjct: 61  GQERYRAITSAYYRGAVGALLVYDITKKSTFENV-ERWLKELRDHA-DSNIVIMLVGNKS 118

Query: 131 DRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKI 176
           D    R V  EE  A A+++G  F+E SA    NVE+ F+QL  +I
Sbjct: 119 DLRHLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQLLTEI 164

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206653 cd01860, Rab5_related, Rab-related GTPase family includes Rab5 and Rab22; regulates early endosome fusion

 Score =  181 bits (463), Expect = 7e-59
 Identities = 71/164 (43%), Positives = 100/164 (60%), Gaps = 3/164 (1%)

Query: 14  SFKILLIGDSGVGKSSLLVSFISSSVDDLS-PTIGVDFKIKLLTVAGKRLKLTIWDTAGQ 72
            FK++L+GDS VGKSS+++ F+ +   +    TIG  F  + + +    +K  IWDTAGQ
Sbjct: 1   QFKLVLLGDSSVGKSSIVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQ 60

Query: 73  ERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDR 132
           ER+R+L   YYRGA   I+VYD+T  E+F      W KE+  +    + V  L GNK D 
Sbjct: 61  ERYRSLAPMYYRGAAAAIVVYDITSEESFEKAKS-WVKELQEHG-PPNIVIALAGNKADL 118

Query: 133 DSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKI 176
           +S+R VS EE    A E+G LF+E SAKT ENV + F ++A K+
Sbjct: 119 ESKRQVSTEEAQEYADENGLLFMETSAKTGENVNELFTEIARKL 162

The Rab5-related subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|133322 cd04122, Rab14, Rab GTPase family 14 (Rab14)

 Score =  181 bits (460), Expect = 2e-58
 Identities = 84/165 (50%), Positives = 110/165 (66%), Gaps = 3/165 (1%)

Query: 15  FKILLIGDSGVGKSSLLVSFISSS-VDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQE 73
           FK ++IGD GVGKS LL  F     + D   TIGV+F  +++ V G+++KL IWDTAGQE
Sbjct: 3   FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQE 62

Query: 74  RFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRD 133
           RFR +T SYYRGA G ++VYD+TRR T+ +LS       +L  TN + V  L+GNK D +
Sbjct: 63  RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNL--TNPNTVIFLIGNKADLE 120

Query: 134 SERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIME 178
           ++R V+ EE    A E+G LFLECSAKT ENVE  F + A KI +
Sbjct: 121 AQRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLETAKKIYQ 165

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|178655 PLN03108, PLN03108, Rab family protein; Provisional

 Score =  177 bits (451), Expect = 2e-56
 Identities = 88/172 (51%), Positives = 116/172 (67%), Gaps = 7/172 (4%)

Query: 10  SYDLSFKILLIGDSGVGKSSLLVSFIS---SSVDDLSPTIGVDFKIKLLTVAGKRLKLTI 66
           SY   FK ++IGD+GVGKS LL+ F       V DL  TIGV+F  +++T+  K +KL I
Sbjct: 2   SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDL--TIGVEFGARMITIDNKPIKLQI 59

Query: 67  WDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLV 126
           WDTAGQE FR++T SYYRGA G +LVYD+TRRETF +L+  W ++   ++ N +   ML+
Sbjct: 60  WDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLAS-WLEDARQHA-NANMTIMLI 117

Query: 127 GNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIME 178
           GNK D    R VS EEG   AKEHG +F+E SAKT +NVE+ F + A KI +
Sbjct: 118 GNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAKIYK 169

Length = 210

>gnl|CDD|133311 cd04111, Rab39, Rab GTPase family 39 (Rab39)

 Score =  176 bits (449), Expect = 4e-56
 Identities = 86/209 (41%), Positives = 130/209 (62%), Gaps = 14/209 (6%)

Query: 15  FKILLIGDSGVGKSSLLVSFISSSVDDLS-PTIGVDFKIKLLTVA-GKRLKLTIWDTAGQ 72
           F++++IGDS VGKSSLL  F      ++S PT+GVDF  +L+ +  G R+KL +WDTAGQ
Sbjct: 3   FRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQ 62

Query: 73  ERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDR 132
           ERFR++T SYYR + G++LV+D+T RE+F ++ D W +E   +      V +LVG+K D 
Sbjct: 63  ERFRSITRSYYRNSVGVLLVFDITNRESFEHVHD-WLEEARSHIQPHRPVFILVGHKCDL 121

Query: 133 DSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKI---MEVPSL-LEEGSN 188
           +S+R V+REE   LAK+ G  ++E SA+T +NVE+ FE L  +I   ++   L   +G +
Sbjct: 122 ESQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFELLTQEIYERIKRGELCALDGWD 181

Query: 189 VVKRNI-------LKQKPENQSPPIGGCC 210
            VK          L+++    + P   CC
Sbjct: 182 GVKSGFPAGRAFSLEERSPTFASPEKSCC 210

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 211

>gnl|CDD|133267 cd01864, Rab19, Rab GTPase family 19 (Rab19)

 Score =  173 bits (439), Expect = 3e-55
 Identities = 81/164 (49%), Positives = 107/164 (65%), Gaps = 4/164 (2%)

Query: 12  DLSFKILLIGDSGVGKSSLLVSFISSS-VDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTA 70
           D  FKI+LIGDS VGK+ ++  F S +  +    TIGVDF +K L + GKR+KL IWDTA
Sbjct: 1   DFLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIQGKRVKLQIWDTA 60

Query: 71  GQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKV 130
           GQERFRT+T SYYR A G I+ YD+TRR +F ++   W +EV+ Y    + V +L+GNK 
Sbjct: 61  GQERFRTITQSYYRSANGAIIAYDITRRSSFESVPH-WIEEVEKY-GASNVVLLLIGNKC 118

Query: 131 DRDSERVVSREEGIALAKEHGSLF-LECSAKTRENVEQCFEQLA 173
           D + +R V  EE   LA+ +G L  LE SAK   NVE+ F  +A
Sbjct: 119 DLEEQREVLFEEACTLAEHYGILAVLETSAKESSNVEEAFLLMA 162

Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet characterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206654 cd01861, Rab6, Rab GTPase family 6 (Rab6)

 Score =  168 bits (428), Expect = 1e-53
 Identities = 67/163 (41%), Positives = 101/163 (61%), Gaps = 3/163 (1%)

Query: 15  FKILLIGDSGVGKSSLLVSFISSSVDDLS-PTIGVDFKIKLLTVAGKRLKLTIWDTAGQE 73
            K++ +GD  VGK+S++  F+  + D+    TIG+DF  K + V  K ++L +WDTAGQE
Sbjct: 1   HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYVDDKTVRLQLWDTAGQE 60

Query: 74  RFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRD 133
           RFR+L  SY R +   ++VYD+T R++F N    W  +V       D + +LVGNK D  
Sbjct: 61  RFRSLIPSYIRDSSVAVVVYDITNRQSFDNTDK-WIDDVRD-ERGNDVIIVLVGNKTDLS 118

Query: 134 SERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKI 176
            +R VS EEG   AKE+ ++F+E SAK   NV+Q F+++A  +
Sbjct: 119 DKRQVSTEEGEKKAKENNAMFIETSAKAGHNVKQLFKKIAQAL 161

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|133314 cd04114, Rab30, Rab GTPase family 30 (Rab30)

 Score =  166 bits (422), Expect = 1e-52
 Identities = 74/168 (44%), Positives = 107/168 (63%), Gaps = 3/168 (1%)

Query: 11  YDLSFKILLIGDSGVGKSSLLVSFISSSVD-DLSPTIGVDFKIKLLTVAGKRLKLTIWDT 69
           YD  FKI+LIG++GVGK+ L+  F           TIGVDF IK + + G+++KL IWDT
Sbjct: 4   YDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDT 63

Query: 70  AGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNK 129
           AGQERFR++T SYYR A  +IL YD+T  E+F  L + W +E++ Y+ N+  + +LVGNK
Sbjct: 64  AGQERFRSITQSYYRSANALILTYDITCEESFRCLPE-WLREIEQYANNK-VITILVGNK 121

Query: 130 VDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIM 177
           +D    R VS++     +      +LE SAK  +NVE+ F  LA +++
Sbjct: 122 IDLAERREVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLDLACRLI 169

Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 169

>gnl|CDD|206695 cd04112, Rab26, Rab GTPase family 26 (Rab26)

 Score =  166 bits (422), Expect = 2e-52
 Identities = 89/202 (44%), Positives = 123/202 (60%), Gaps = 17/202 (8%)

Query: 15  FKILLIGDSGVGKSSLLVSFISSS--VDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQ 72
           FK++L+GDSGVGK+ LLV F   +        T+G+ F  K++TV G ++KL IWDTAGQ
Sbjct: 1   FKVMLVGDSGVGKTCLLVRFKDGAFLAGSFIATVGIQFTNKVVTVDGVKVKLQIWDTAGQ 60

Query: 73  ERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDR 132
           ERFR++T +YYR A  ++L+YDVT + +F N+   W  E+  Y+   D V ML+GNK D 
Sbjct: 61  ERFRSVTHAYYRDAHALLLLYDVTNKSSFDNIR-AWLTEILEYA-QSDVVIMLLGNKADM 118

Query: 133 DSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCF----EQLALKIMEVPSLLEEGSN 188
             ERVV RE+G  LAKE+G  F+E SAKT  NVE  F    ++L  + +E P    E   
Sbjct: 119 SGERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVAKELKHRSVEQPD---EPKF 175

Query: 189 VVKRNILKQKPENQSPPIGGCC 210
            ++  + KQK  +      GCC
Sbjct: 176 KIQDYVEKQKKSS------GCC 191

Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 191

>gnl|CDD|206696 cd04113, Rab4, Rab GTPase family 4 (Rab4)

 Score =  164 bits (418), Expect = 4e-52
 Identities = 81/163 (49%), Positives = 108/163 (66%), Gaps = 3/163 (1%)

Query: 15  FKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQE 73
           FK L+IG +G GKS LL  FI +    D + TIGV+F  +++ V GK +KL IWDTAGQE
Sbjct: 1   FKFLIIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKSVKLQIWDTAGQE 60

Query: 74  RFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRD 133
           RFR++T SYYRGA G +LVYD+T RE+F  L++ W  +    ++  D V +LVGNK D +
Sbjct: 61  RFRSVTRSYYRGAAGALLVYDITSRESFNALTN-WLTDARTLAS-PDIVIILVGNKKDLE 118

Query: 134 SERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKI 176
            +R V+  E    A+E+G LFLE SA T ENVE+ F + A  I
Sbjct: 119 DDREVTFLEASRFAQENGLLFLETSALTGENVEEAFLKCARSI 161

Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|133310 cd04110, Rab35, Rab GTPase family 35 (Rab35)

 Score =  160 bits (407), Expect = 5e-50
 Identities = 83/161 (51%), Positives = 107/161 (66%), Gaps = 6/161 (3%)

Query: 11  YDLSFKILLIGDSGVGKSSLLVSFISSSVD-DLSPTIGVDFKIKLLTVAGKRLKLTIWDT 69
           YD  FK+L+IGDSGVGKSSLL+ F  ++       TIGVDFKI+ + + G+R+KL IWDT
Sbjct: 3   YDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDT 62

Query: 70  AGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCV-KMLVGN 128
           AGQERFRT+TS+YYRG  G+I+VYDVT  E+F N+   W +E++    N D V K+LVGN
Sbjct: 63  AGQERFRTITSTYYRGTHGVIVVYDVTNGESFVNVKR-WLQEIE---QNCDDVCKVLVGN 118

Query: 129 KVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCF 169
           K D    +VV  E+    A + G    E SAK   NVE+ F
Sbjct: 119 KNDDPERKVVETEDAYKFAGQMGISLFETSAKENINVEEMF 159

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 199

>gnl|CDD|206657 cd01865, Rab3, Rab GTPase family 3 contains Rab3A, Rab3B, Rab3C and Rab3D

 Score =  157 bits (398), Expect = 4e-49
 Identities = 82/163 (50%), Positives = 109/163 (66%), Gaps = 11/163 (6%)

Query: 15  FKILLIGDSGVGKSSLLV-----SFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDT 69
           FK+L+IG+S VGK+S L      SF S+ V     T+G+DFK+K +    KR+KL IWDT
Sbjct: 2   FKLLIIGNSSVGKTSFLFRYADDSFTSAFVS----TVGIDFKVKTVYRNDKRIKLQIWDT 57

Query: 70  AGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNK 129
           AGQER+RT+T++YYRGA G IL+YD+T  E+F  + D W+ ++  YS +   V +LVGNK
Sbjct: 58  AGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQD-WSTQIKTYSWDNAQV-ILVGNK 115

Query: 130 VDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQL 172
            D + ERVVS E G  LA + G  F E SAK   NV+Q FE+L
Sbjct: 116 CDMEDERVVSAERGRQLADQLGFEFFEASAKENINVKQVFERL 158

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|133323 cd04123, Rab21, Rab GTPase family 21 (Rab21)

 Score =  154 bits (392), Expect = 5e-48
 Identities = 64/165 (38%), Positives = 99/165 (60%), Gaps = 5/165 (3%)

Query: 15  FKILLIGDSGVGKSSLLVSFISSSVDDLSP-TIGVDFKIKLLTVAGKRLKLTIWDTAGQE 73
           FK++L+G+  VGK+SL++ ++ +  ++    T    F  K + + GKR+ L IWDTAGQE
Sbjct: 1   FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQE 60

Query: 74  RFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKM-LVGNKVDR 132
           R+  L   YYR A G ILVYD+T  ++F  +   W KE  L     + + + +VGNK+D 
Sbjct: 61  RYHALGPIYYRDADGAILVYDITDADSFQKVKK-WIKE--LKQMRGNNISLVIVGNKIDL 117

Query: 133 DSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIM 177
           + +RVVS+ E    AK  G+   E SAKT + +E+ F  LA +++
Sbjct: 118 ERQRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLAKRMI 162

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|178657 PLN03110, PLN03110, Rab GTPase; Provisional

 Score =  156 bits (395), Expect = 6e-48
 Identities = 82/174 (47%), Positives = 116/174 (66%), Gaps = 3/174 (1%)

Query: 9   NSYDLSFKILLIGDSGVGKSSLLVSFISSSVD-DLSPTIGVDFKIKLLTVAGKRLKLTIW 67
           + YD  FKI+LIGDSGVGKS++L  F  +    +   TIGV+F  + L V GK +K  IW
Sbjct: 7   HEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIW 66

Query: 68  DTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVG 127
           DTAGQER+R +TS+YYRGA G +LVYD+T+R+TF N+   W +E+  ++ + + V M+ G
Sbjct: 67  DTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQR-WLRELRDHA-DSNIVIMMAG 124

Query: 128 NKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIMEVPS 181
           NK D +  R V+ E+G ALA++ G  FLE SA    NVE+ F+ + L+I  + S
Sbjct: 125 NKSDLNHLRSVAEEDGQALAEKEGLSFLETSALEATNVEKAFQTILLEIYHIIS 178

Length = 216

>gnl|CDD|206699 cd04120, Rab12, Rab GTPase family 12 (Rab12)

 Score =  152 bits (384), Expect = 2e-46
 Identities = 86/195 (44%), Positives = 130/195 (66%), Gaps = 11/195 (5%)

Query: 16  KILLIGDSGVGKSSLLVSFISSSVDDLSP-TIGVDFKIKLLTVAGKRLKLTIWDTAGQER 74
           ++++IG  GVGK+SL+  F   +  +    T+GVDFKIK + + GK+++L IWDTAGQER
Sbjct: 2   QVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQER 61

Query: 75  FRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDS 134
           F ++TS+YYR A+GIILVYD+T++ETF +L   W K +D Y++ +D   +LVGNK+D ++
Sbjct: 62  FNSITSAYYRSAKGIILVYDITKKETFDDLPK-WMKMIDKYAS-EDAELLLVGNKLDCET 119

Query: 135 ERVVSREEGIALAKE-HGSLFLECSAKTRENVEQCFEQLA---LKIMEVPSLLEEGSNVV 190
           +R ++R++G   A++  G  F E SAK   NV++ F +L    LK M +  L  E SN  
Sbjct: 120 DREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKKMPLDILRNELSN-- 177

Query: 191 KRNILKQKPENQSPP 205
             +IL  +PE + PP
Sbjct: 178 --SILSLQPEPEIPP 190

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 202

>gnl|CDD|206655 cd01862, Rab7, Rab GTPase family 7 (Rab7)

 Score =  150 bits (380), Expect = 3e-46
 Identities = 66/169 (39%), Positives = 105/169 (62%), Gaps = 6/169 (3%)

Query: 15  FKILLIGDSGVGKSSLLVSFISSSVDDL-SPTIGVDFKIKLLTVAGKRLKLTIWDTAGQE 73
            K++++GDSGVGK+SL+  +++    +    TIG DF  K +TV  + + L IWDTAGQE
Sbjct: 1   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDRLVTLQIWDTAGQE 60

Query: 74  RFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVK---MLVGNKV 130
           RF++L  ++YRGA   +LVYDVT  ++F +L D W  E  + ++ +D      +++GNK+
Sbjct: 61  RFQSLGVAFYRGADCCVLVYDVTNPKSFESL-DSWRDEFLIQASPRDPENFPFVVLGNKI 119

Query: 131 DRDSERVVSREEGIALAKEHGSL-FLECSAKTRENVEQCFEQLALKIME 178
           D + +R VS ++     K  G++ + E SAK   NV+Q FE +A   +E
Sbjct: 120 DLEEKRQVSTKKAQQWCKSKGNIPYFETSAKEAINVDQAFETIARLALE 168

Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 172

>gnl|CDD|206642 cd00876, Ras, Rat sarcoma (Ras) family of small guanosine triphosphatases (GTPases)

 Score =  146 bits (370), Expect = 8e-45
 Identities = 70/163 (42%), Positives = 99/163 (60%), Gaps = 5/163 (3%)

Query: 16  KILLIGDSGVGKSSLLVSFISSS-VDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER 74
           K++++G  GVGKS+L + F+S   V++  PTI  D   K + V G+   L I DTAGQE 
Sbjct: 1   KLVVLGAGGVGKSALTIRFVSGEFVEEYDPTIE-DSYRKQIVVDGETYTLDILDTAGQEE 59

Query: 75  FRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKM-LVGNKVDRD 133
           F  +   Y R   G ILVY +T RE+F  + ++  +E  L   +++ V + LVGNK D +
Sbjct: 60  FSAMRDQYIRNGDGFILVYSITSRESFEEIKNI--REQILRVKDKEDVPIVLVGNKCDLE 117

Query: 134 SERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKI 176
           +ER VS EEG ALA+E G  FLE SAKT  N+++ F  L  +I
Sbjct: 118 NERQVSTEEGEALAEEWGCPFLETSAKTNINIDELFNTLVREI 160

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 160

>gnl|CDD|214541 smart00173, RAS, Ras subfamily of RAS small GTPases

 Score =  146 bits (370), Expect = 9e-45
 Identities = 69/165 (41%), Positives = 96/165 (58%), Gaps = 5/165 (3%)

Query: 15  FKILLIGDSGVGKSSLLVSFISSS-VDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQE 73
           +K++++G  GVGKS+L + FI    VDD  PTI  D   K + + G+   L I DTAGQE
Sbjct: 1   YKLVVLGSGGVGKSALTIQFIQGHFVDDYDPTIE-DSYRKQIEIDGEVCLLDILDTAGQE 59

Query: 74  RFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKM-LVGNKVDR 132
            F  +   Y R  +G +LVY +T R++F  +     + + +     D V + LVGNK D 
Sbjct: 60  EFSAMRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDR--DDVPIVLVGNKCDL 117

Query: 133 DSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIM 177
           +SERVVS EEG  LA++ G  FLE SAK R NV++ F  L  +I 
Sbjct: 118 ESERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDLVREIR 162

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades. Length = 164

>gnl|CDD|197466 smart00010, small_GTPase, Small GTPase of the Ras superfamily; ill-defined subfamily

 Score =  145 bits (368), Expect = 2e-44
 Identities = 65/167 (38%), Positives = 96/167 (57%), Gaps = 9/167 (5%)

Query: 15  FKILLIGDSGVGKSSLLVSFISSS-VDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQE 73
           +K++++G  GVGKS+L + F+    VD+  PTI  D   K + + G+   L I DTAGQE
Sbjct: 3   YKLVVLGGGGVGKSALTIQFVQGHFVDEYDPTIE-DSYRKQIEIDGEVCLLDILDTAGQE 61

Query: 74  RFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVK---MLVGNKV 130
            F  +   Y R  +G +LVY +T R++F  ++    + + +     D      +LVGNK 
Sbjct: 62  EFSAMRDQYMRTGEGFLLVYSITDRQSFEEIAKFREQILRVK----DRDDVPIVLVGNKC 117

Query: 131 DRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIM 177
           D ++ERVVS EEG  LA++ G  FLE SAK R NV++ F  L  +I 
Sbjct: 118 DLENERVVSTEEGKELARQWGCPFLETSAKERINVDEAFYDLVREIR 164

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily. Length = 166

>gnl|CDD|206698 cd04117, Rab15, Rab GTPase family 15 (Rab15)

 Score =  143 bits (363), Expect = 9e-44
 Identities = 73/165 (44%), Positives = 109/165 (66%), Gaps = 3/165 (1%)

Query: 15  FKILLIGDSGVGKSSLLVSFISSSVDDLS-PTIGVDFKIKLLTVAGKRLKLTIWDTAGQE 73
           F++LLIGDSGVGK+ LL  F  +        TIGVDFK+K + V G ++++ IWDTAGQE
Sbjct: 1   FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQE 60

Query: 74  RFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRD 133
           R++T+T  YYR AQGI LVYD++   ++ ++   W  +VD Y+  +   K+L+GNK D +
Sbjct: 61  RYQTITKQYYRRAQGIFLVYDISSERSYQHIMK-WVSDVDEYA-PEGVQKILIGNKADEE 118

Query: 134 SERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIME 178
            +R V  E+G  LAKE+G  F E SA T +N+++ F +L   +++
Sbjct: 119 QKRQVGDEQGNKLAKEYGMDFFETSACTNKNIKESFTRLTELVLQ 163

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|133315 cd04115, Rab33B_Rab33A, Rab GTPase family 33 includes Rab33A and Rab33B

 Score =  135 bits (342), Expect = 2e-40
 Identities = 63/167 (37%), Positives = 93/167 (55%), Gaps = 6/167 (3%)

Query: 15  FKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQE 73
           FKI++IGDS VGK+ L   F +    +    TIGVDF+ + + + G+R+K+ +WDTAGQE
Sbjct: 3   FKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQE 62

Query: 74  RFR-TLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDR 132
           RFR ++   YYR    ++ VYDVT   +F +L   W +E + +S   +  ++LVGNK D 
Sbjct: 63  RFRKSMVQHYYRNVHAVVFVYDVTNMASFHSLP-SWIEECEQHSLPNEVPRILVGNKCDL 121

Query: 133 DSERVVSREEGIALAKEHGSLFLECSAK---TRENVEQCFEQLALKI 176
             +  V  +     A  H     E SAK     ++VE  F  LA K+
Sbjct: 122 REQIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAIFMTLAHKL 168

Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|206692 cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab18) and 32 (Rab32)

 Score =  132 bits (335), Expect = 4e-39
 Identities = 68/204 (33%), Positives = 100/204 (49%), Gaps = 11/204 (5%)

Query: 15  FKILLIGDSGVGKSSLLVSFISSSVD-DLSPTIGVDFKIKLLTVAGKRL-KLTIWDTAGQ 72
           FK+L+IGD GVGK+S++  ++          TIGVDF +K++      + +L +WD AGQ
Sbjct: 1   FKVLVIGDLGVGKTSIIKRYVHGVFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQ 60

Query: 73  ERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVD---LYSTNQDCVKMLVGNK 129
           ERF  +T  YY+GA G I+V+DVTR  TF      W  ++D        +    +L+ NK
Sbjct: 61  ERFGGMTRVYYKGAVGAIIVFDVTRPSTFEA-VLKWKADLDSKVTLPNGEPIPALLLANK 119

Query: 130 VDRDSER-VVSREEGIALAKEHGSL-FLECSAKTRENVEQCFEQLALKIMEVPSLLEEGS 187
            D   ER     E+     KE+G + + E SAK   N+E+    L   I++    L+   
Sbjct: 120 CDLKKERLAKDPEQMDQFCKENGFIGWFETSAKENINIEEAMRFLVKNILKNDKGLQSPE 179

Query: 188 NVVKRNI-LKQKPENQSPPIGGCC 210
                 I LKQ+          CC
Sbjct: 180 PDEDNVIDLKQETTTSKSK--SCC 201

Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 201

>gnl|CDD|206700 cd04127, Rab27A, Rab GTPase family 27a (Rab27a)

 Score =  129 bits (327), Expect = 3e-38
 Identities = 66/181 (36%), Positives = 102/181 (56%), Gaps = 16/181 (8%)

Query: 11  YDLSFKILLIGDSGVGKSSLLVSFISSSVD-DLSPTIGVDFKIKLLTVA----------G 59
           YD   K+L +GDSGVGK++ L  +  +  +     T+G+DF+ K +              
Sbjct: 1   YDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNSQGPDGTSGKA 60

Query: 60  KRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKE--VDLYST 117
            R+ L +WDTAGQERFR+LT++++R A G +L++D+T  ++F N+ + W  +     Y  
Sbjct: 61  FRVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSEQSFLNVRN-WMSQLQAHAYCE 119

Query: 118 NQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIM 177
           N D V  L+GNK D   +R VS  +   LA ++G  + E SA T +NVE+  E L   IM
Sbjct: 120 NPDIV--LIGNKADLPDQREVSERQARELADKYGIPYFETSAATGQNVEKAVETLLDLIM 177

Query: 178 E 178
           +
Sbjct: 178 K 178

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated insulin secretion, making it a potential target for diabetes therapy. When bound to JFC1 in prostate cells, Rab27a is believed to regulate the exocytosis of prostate- specific markers. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 180

>gnl|CDD|133319 cd04119, RJL, Rab GTPase family J-like (RabJ-like)

 Score =  127 bits (320), Expect = 3e-37
 Identities = 55/166 (33%), Positives = 92/166 (55%), Gaps = 14/166 (8%)

Query: 16  KILLIGDSGVGKSSLLV-----SFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTA 70
           K++ +G+SGVGKS ++       F+S  +    PTIG+D+ +K ++V  K +++  +D +
Sbjct: 2   KVISMGNSGVGKSCIIKRYCEGRFVSKYL----PTIGIDYGVKKVSVRNKEVRVNFFDLS 57

Query: 71  GQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQ----DCVKMLV 126
           G   +  + + +Y+  QG++LVYDVT R++F  L D W KE+           + V ++ 
Sbjct: 58  GHPEYLEVRNEFYKDTQGVLLVYDVTDRQSFEAL-DSWLKEMKQEGGPHGNMENIVVVVC 116

Query: 127 GNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQL 172
            NK+D    R VS +EG   A+  G  + E SA T E V + F+ L
Sbjct: 117 ANKIDLTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMFQTL 162

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 168

>gnl|CDD|133345 cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3

 Score =  126 bits (318), Expect = 5e-37
 Identities = 67/166 (40%), Positives = 93/166 (56%), Gaps = 17/166 (10%)

Query: 15  FKILLIGDSGVGKSSLLVSFISSS-VDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQE 73
           +K++++G  GVGKS+L + FI S  V D  PTI  D   K   + G+  +L I DTAGQE
Sbjct: 3   YKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIE-DSYTKQCEIDGQWARLDILDTAGQE 61

Query: 74  RFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVK-------MLV 126
            F  +   Y R  +G +LV+ VT R +F        +EVD + T    VK       +LV
Sbjct: 62  EFSAMREQYMRTGEGFLLVFSVTDRGSF--------EEVDKFHTQILRVKDRDEFPMILV 113

Query: 127 GNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQL 172
           GNK D + +R VSREEG  LA++    ++E SAK R NV++ F  L
Sbjct: 114 GNKADLEHQRQVSREEGQELARQLKIPYIETSAKDRVNVDKAFHDL 159

The M-Ras/R-Ras-like subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General function prediction only]

 Score =  126 bits (319), Expect = 1e-36
 Identities = 70/220 (31%), Positives = 107/220 (48%), Gaps = 19/220 (8%)

Query: 10  SYDLSFKILLIGDSGVGKSSLLVSFISSSVD-DLSPTIGVDFKIKLLTVAGKRLKLTIWD 68
            +   FKI+++GD GVGK++LL   +         PTIG     K +    + +KL +WD
Sbjct: 1   LFMKEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWD 60

Query: 69  TAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGN 128
           TAGQE +R+L   YYRGA GI++VYD T RE+   L++ W +E+   + +   + +LVGN
Sbjct: 61  TAGQEEYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPI-LLVGN 119

Query: 129 KVDRDSERVVSREEGIALAKEH---------------GSLFLECSAK--TRENVEQCFEQ 171
           K+D   E+  S E    L +E                    LE SAK  T  NV + F++
Sbjct: 120 KIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETSAKSLTGPNVNELFKE 179

Query: 172 LALKIMEVPSLLEEGSNVVKRNILKQKPENQSPPIGGCCS 211
           L  K++E    L   + + + + L    E  +     C  
Sbjct: 180 LLRKLLEEIEKLVLKNELRQLDRLNNPIEQAALASFNCVL 219

Length = 219

>gnl|CDD|206709 cd04137, RheB, Ras Homolog Enriched in Brain (RheB) is a small GTPase

 Score =  125 bits (315), Expect = 3e-36
 Identities = 70/162 (43%), Positives = 92/162 (56%), Gaps = 3/162 (1%)

Query: 16  KILLIGDSGVGKSSLLVSFISSS-VDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER 74
           KI ++G   VGKSSL V F+    V+   PTI   F  K++T  G+   L I DTAGQ+ 
Sbjct: 3   KIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIITYKGQEYHLEIVDTAGQDE 61

Query: 75  FRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDS 134
           +  L   Y  G  G ILVY VT R++F  +  ++ K +D+       + +LVGNK D   
Sbjct: 62  YSILPQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPI-VLVGNKSDLHM 120

Query: 135 ERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKI 176
           ER VS EEG  LA+  G+ FLE SAK  ENVE+ FE L  +I
Sbjct: 121 ERQVSAEEGKKLAESWGAAFLESSAKENENVEEAFELLIEEI 162

Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that leads to cell growth and cell-cycle progression. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 180

>gnl|CDD|206641 cd00157, Rho, Ras homology family (Rho) of small guanosine triphosphatases (GTPases)

 Score =  123 bits (310), Expect = 1e-35
 Identities = 56/171 (32%), Positives = 91/171 (53%), Gaps = 16/171 (9%)

Query: 16  KILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER 74
           KI+++GD  VGK+ LL+S+ ++    +  PT+  D     +TV GK++ L +WDTAGQE 
Sbjct: 2   KIVVVGDGAVGKTCLLISYTTNKFPTEYVPTV-FDNYSANVTVDGKQVNLGLWDTAGQEE 60

Query: 75  FRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVD-RD 133
           +  L    Y      +L + V    +F N+   W  E+  Y    +   +LVG K+D RD
Sbjct: 61  YDRLRPLSYPQTDVFLLCFSVDSPSSFENVKTKWYPEIKHY--CPNVPIILVGTKIDLRD 118

Query: 134 SERV----------VSREEGIALAKEHGSL-FLECSAKTRENVEQCFEQLA 173
                         ++ EEG  LAKE G++ ++ECSA T+E +++ F++  
Sbjct: 119 DGNTLKKLEKKQKPITPEEGEKLAKEIGAVKYMECSALTQEGLKEVFDEAI 169

Members of the Rho (Ras homology) family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Since crystal structures often lack C-terminal residues, this feature is not available for annotation in many of the CDs in the hierarchy. Length = 171

>gnl|CDD|133321 cd04121, Rab40, Rab GTPase family 40 (Rab40) contains Rab40a, Rab40b and Rab40c

 Score =  122 bits (308), Expect = 3e-35
 Identities = 70/167 (41%), Positives = 101/167 (60%), Gaps = 8/167 (4%)

Query: 10  SYDLSFKILLIGDSGVGKSSLLVSFISSSVDDLSP---TIGVDFKIKLLTVAGKRLKLTI 66
           +YD   K LL+GDS VGK  +L S    S +  SP    +G+D+K   + + G+R+KL +
Sbjct: 2   AYDYLLKFLLVGDSDVGKGEILASLQDGSTE--SPYGYNMGIDYKTTTILLDGRRVKLQL 59

Query: 67  WDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLV 126
           WDT+GQ RF T+  SY RGAQGIILVYD+T R +F  + D W KE+D ++      K+LV
Sbjct: 60  WDTSGQGRFCTIFRSYSRGAQGIILVYDITNRWSFDGI-DRWIKEIDEHAPG--VPKILV 116

Query: 127 GNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLA 173
           GN++    +R V+ E+  A A+ +G  F E S     N+ + F +LA
Sbjct: 117 GNRLHLAFKRQVATEQAQAYAERNGMTFFEVSPLCNFNITESFTELA 163

The Rab40 subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 189

>gnl|CDD|206697 cd04116, Rab9, Rab GTPase family 9 (Rab9)

 Score =  121 bits (305), Expect = 5e-35
 Identities = 68/162 (41%), Positives = 98/162 (60%), Gaps = 7/162 (4%)

Query: 15  FKILLIGDSGVGKSSLLVSFISSSVD-DLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQE 73
            K++L+GD GVGKSSL+  ++++  D  L  TIGV+F  K L V G  + L IWDTAGQE
Sbjct: 6   LKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQE 65

Query: 74  RFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVK---MLVGNKV 130
           RFR+L + +YRG+   +L + V   ++F NLS  W KE   Y+  ++      +++GNK+
Sbjct: 66  RFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLS-NWKKEFIYYADVKEPESFPFVILGNKI 124

Query: 131 DRDSERVVSREEGIALAKEHGSL-FLECSAKTRENVEQCFEQ 171
           D   ER VS EE  A  +++G   + E SAK   NV   FE+
Sbjct: 125 DI-PERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEE 165

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|133344 cd04144, Ras2, Rat sarcoma (Ras) family 2 of small guanosine triphosphatases (GTPases)

 Score =  116 bits (291), Expect = 1e-32
 Identities = 63/169 (37%), Positives = 92/169 (54%), Gaps = 11/169 (6%)

Query: 16  KILLIGDSGVGKSSLLVSF-ISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER 74
           K++++GD GVGK++L +   ++  V+   PTI   ++ K + V G+   L + DTAGQE 
Sbjct: 1   KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYR-KQVVVDGQPCMLEVLDTAGQEE 59

Query: 75  FRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVW-----AKEVDLYSTNQDCVKMLVGNK 129
           +  L   + R  +G ILVY +T R TF  +          K+     +  D   M+VGNK
Sbjct: 60  YTALRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKD----ESAADVPIMIVGNK 115

Query: 130 VDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIME 178
            D+  ER VS EEG ALA+  G  F+E SAKT  NVE+ F  L   + +
Sbjct: 116 CDKVYEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLVRALRQ 164

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 190

>gnl|CDD|133375 cd04175, Rap1, Rap1 family GTPase consists of Rap1a and Rap1b isoforms

 Score =  114 bits (287), Expect = 2e-32
 Identities = 66/164 (40%), Positives = 98/164 (59%), Gaps = 5/164 (3%)

Query: 15  FKILLIGDSGVGKSSLLVSFISSS-VDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQE 73
           +K++++G  GVGKS+L V F+    V+   PTI   ++ K + V G++  L I DTAG E
Sbjct: 2   YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDGQQCMLEILDTAGTE 60

Query: 74  RFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKM-LVGNKVDR 132
           +F  +   Y +  QG +LVY +T + TF +L D+  +E  L   + + V M LVGNK D 
Sbjct: 61  QFTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDL--REQILRVKDTEDVPMILVGNKCDL 118

Query: 133 DSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKI 176
           + ERVV +E+G  LA++ G  FLE SAK + NV + F  L  +I
Sbjct: 119 EDERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDLVRQI 162

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines; interestingly, in the SCCs, the active GTP-bound form localized to the nucleus, while the inactive GDP-bound form localized to the cytoplasm. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap1a, which is stimulated by T-cell receptor (TCR) activation, is a positive regulator of T cells by directing integrin activation and augmenting lymphocyte responses. In murine hippocampal neurons, Rap1b determines which neurite will become the axon and directs the recruitment of Cdc42, which is required for formation of dendrites and axons. In murine platelets, Rap1b is required for normal homeostasis in vivo and is involved in integrin activation. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|206710 cd04139, RalA_RalB, Ral (Ras-like) family containing highly homologous RalA and RalB

 Score =  112 bits (281), Expect = 2e-31
 Identities = 63/164 (38%), Positives = 97/164 (59%), Gaps = 5/164 (3%)

Query: 15  FKILLIGDSGVGKSSLLVSFISSS-VDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQE 73
            K++++G  GVGKS+L + F+    V+D  PT   D   K + + G+ ++L I DTAGQE
Sbjct: 1   HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKA-DSYRKKVVLDGEEVQLNILDTAGQE 59

Query: 74  RFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKM-LVGNKVDR 132
            +  +  +Y+R  +G +LV+ +T  E+FT L++    E  L     D V + LVGNK D 
Sbjct: 60  DYAAIRDNYFRSGEGFLLVFSITDMESFTALAEFR--EQILRVKEDDNVPLLLVGNKCDL 117

Query: 133 DSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKI 176
           + +R VS EE   LA++ G  ++E SAKTR NV++ F  L  +I
Sbjct: 118 EDKRQVSVEEAANLAEQWGVNYVETSAKTRANVDKVFFDLVREI 161

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (>80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exocyst and for localizing the exocyst to the leading edge of migrating cells. In human cancer cells, RalA is required to support anchorage-independent proliferation and RalB is required to suppress apoptosis. RalA has been shown to localize to the plasma membrane while RalB is localized to the intracellular vesicles. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|240385 PTZ00369, PTZ00369, Ras-like protein; Provisional

 Score =  112 bits (281), Expect = 3e-31
 Identities = 67/166 (40%), Positives = 95/166 (57%), Gaps = 5/166 (3%)

Query: 13  LSFKILLIGDSGVGKSSLLVSFISSS-VDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAG 71
             +K++++G  GVGKS+L + FI +  +D+  PTI   ++ K   +  +   L I DTAG
Sbjct: 4   TEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYR-KQCVIDEETCLLDILDTAG 62

Query: 72  QERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKM-LVGNKV 130
           QE +  +   Y R  QG + VY +T R +F  ++    +E  L   ++D V M LVGNK 
Sbjct: 63  QEEYSAMRDQYMRTGQGFLCVYSITSRSSFEEIASF--REQILRVKDKDRVPMILVGNKC 120

Query: 131 DRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKI 176
           D DSER VS  EG  LAK  G  FLE SAK R NV++ F +L  +I
Sbjct: 121 DLDSERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYELVREI 166

Length = 189

>gnl|CDD|133338 cd04138, H_N_K_Ras_like, Ras GTPase family containing H-Ras,N-Ras and K-Ras4A/4B

 Score =  110 bits (278), Expect = 4e-31
 Identities = 60/164 (36%), Positives = 92/164 (56%), Gaps = 6/164 (3%)

Query: 15  FKILLIGDSGVGKSSLLVSFISSS-VDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQE 73
           +K++++G  GVGKS+L +  I +  VD+  PTI  D   K + + G+   L I DTAGQE
Sbjct: 2   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQE 60

Query: 74  RFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKM-LVGNKVDR 132
            +  +   Y R  +G + V+ +  R++F ++     +E      + D V M LVGNK D 
Sbjct: 61  EYSAMRDQYMRTGEGFLCVFAINSRKSFEDIHTY--REQIKRVKDSDDVPMVLVGNKCDL 118

Query: 133 DSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKI 176
            + R VS  +G  LAK +G  ++E SAKTR+ VE+ F  L  +I
Sbjct: 119 AA-RTVSTRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLVREI 161

H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1. Others are proposed to play negative regulatory roles in oncogenesis, including RASSF and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|197554 smart00174, RHO, Rho (Ras homology) subfamily of Ras-like small GTPases

 Score =  111 bits (279), Expect = 5e-31
 Identities = 52/169 (30%), Positives = 91/169 (53%), Gaps = 17/169 (10%)

Query: 17  ILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERF 75
           ++++GD  VGK+ LL+ + +++  +D  PT+  ++    + V GK ++L +WDTAGQE +
Sbjct: 1   LVVVGDGAVGKTCLLIVYTTNAFPEDYVPTVFENY-SADVEVDGKPVELGLWDTAGQEDY 59

Query: 76  RTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVD---- 131
             L    Y      ++ + V    +F N+ + W  EV  +    +   +LVG K+D    
Sbjct: 60  DRLRPLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHF--CPNVPIILVGTKLDLRND 117

Query: 132 --------RDSERVVSREEGIALAKEHGSL-FLECSAKTRENVEQCFEQ 171
                   +  +  V+ E+G ALAK  G++ +LECSA T+E V + FE+
Sbjct: 118 KSTLEELSKKKQEPVTYEQGQALAKRIGAVKYLECSALTQEGVREVFEE 166

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms. Length = 174

>gnl|CDD|206704 cd04132, Rho4_like, Ras homology family 4 (Rho4) of small guanosine triphosphatases (GTPases)-like

 Score =  112 bits (281), Expect = 6e-31
 Identities = 59/176 (33%), Positives = 90/176 (51%), Gaps = 22/176 (12%)

Query: 12  DLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTA 70
           DL  KI+++GD G GK+ LL+ +   S  ++  PT+  ++   L    GK ++L +WDTA
Sbjct: 1   DLKVKIVVVGDGGCGKTCLLMVYAQGSFPEEYVPTVFENYVTTLQVPNGKIIELALWDTA 60

Query: 71  GQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVK---MLVG 127
           GQE +  L    Y     I++ Y V    +  N+ D W  EV     N  C     +LVG
Sbjct: 61  GQEDYDRLRPLSYPDVDVILICYSVDNPTSLDNVEDKWYPEV-----NHFCPGTPIVLVG 115

Query: 128 NKVD--RDSERV----------VSREEGIALAKEHGS-LFLECSAKTRENVEQCFE 170
            K D  +D   V          V+ E+G ++AK  G+  ++ECSAK  ENV++ F+
Sbjct: 116 LKTDLRKDKNSVSKLRAQGLEPVTPEQGESVAKSIGAVAYIECSAKLMENVDEVFD 171

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 197

>gnl|CDD|206708 cd04136, Rap_like, Rap-like family consists of Rap1, Rap2 and RSR1

 Score =  110 bits (277), Expect = 7e-31
 Identities = 68/165 (41%), Positives = 100/165 (60%), Gaps = 6/165 (3%)

Query: 15  FKILLIGDSGVGKSSLLVSFISSS-VDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQE 73
           +K++++G  GVGKS+L V F+    VD   PTI  D   K + V  ++  L I DTAG E
Sbjct: 2   YKLVVLGSGGVGKSALTVQFVQGIFVDKYDPTIE-DSYRKQIEVDCQQCMLEILDTAGTE 60

Query: 74  RFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKM-LVGNKVDR 132
           +F  +   Y +  QG  LVY +T +++F +L D+  +E  L   + + V M LVGNK D 
Sbjct: 61  QFTAMRDLYIKNGQGFALVYSITAQQSFNDLQDL--REQILRVKDTEDVPMILVGNKCDL 118

Query: 133 DSERVVSREEGIALAKEHGSL-FLECSAKTRENVEQCFEQLALKI 176
           + ERVVS+EEG  LA++ G+  FLE SAK++ NV++ F  L  +I
Sbjct: 119 EDERVVSKEEGQNLARQWGNCPFLETSAKSKINVDEIFYDLVRQI 163

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap2 is involved in multiple functions, including activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton and activation of the Wnt/beta-catenin signaling pathway in embryonic Xenopus. A number of effector proteins for Rap2 have been identified, including isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK), and the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. RSR1 is the fungal homolog of Rap1 and Rap2. In budding yeasts, it is involved in selecting a site for bud growth, which directs the establishment of cell polarization. The Rho family GTPase Cdc42 and its GEF, Cdc24, then establish an axis of polarized growth. It is believed that Cdc42 interacts directly with RSR1 in vivo. In filamentous fungi such as Ashbya gossypii, RSR1 is a key regulator of polar growth in the hypha. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|133376 cd04176, Rap2, Rap2 family GTPase consists of Rap2a, Rap2b, and Rap2c

 Score =  110 bits (276), Expect = 1e-30
 Identities = 61/157 (38%), Positives = 94/157 (59%), Gaps = 5/157 (3%)

Query: 15  FKILLIGDSGVGKSSLLVSFISSS-VDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQE 73
           +K++++G  GVGKS+L V F+S + ++   PTI  DF  K + V      L I DTAG E
Sbjct: 2   YKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTE 60

Query: 74  RFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVK-MLVGNKVDR 132
           +F ++   Y +  QG I+VY +  ++TF ++  +  ++  +     + V  +LVGNKVD 
Sbjct: 61  QFASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPM--RDQIVRVKGYEKVPIILVGNKVDL 118

Query: 133 DSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCF 169
           +SER VS  EG ALA+E G  F+E SAK++  V + F
Sbjct: 119 ESEREVSSAEGRALAEEWGCPFMETSAKSKTMVNELF 155

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, including the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|133306 cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-like

 Score =  108 bits (272), Expect = 4e-30
 Identities = 63/163 (38%), Positives = 91/163 (55%), Gaps = 6/163 (3%)

Query: 16  KILLIGDSGVGKSSLLVSFISSS-VDDLSPTIGVDF--KIKLLTVAGKRLKLTIWDTAGQ 72
           K++++G+  VGKSS++  F+      D   TIGVDF  K   L  + + ++L +WDTAGQ
Sbjct: 2   KVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQ 61

Query: 73  ERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDR 132
           E F  +T +YYRGAQ  ILV+  T RE+F  +   W ++V+  +   D   +LV  K+D 
Sbjct: 62  EEFDAITKAYYRGAQACILVFSTTDRESFEAIES-WKEKVE--AECGDIPMVLVQTKIDL 118

Query: 133 DSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALK 175
             + V++ EE  ALAK         S K   NV + FE LA K
Sbjct: 119 LDQAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELFEYLAEK 161

Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signaling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|185444 PTZ00099, PTZ00099, rab6; Provisional

 Score =  108 bits (271), Expect = 7e-30
 Identities = 60/170 (35%), Positives = 96/170 (56%), Gaps = 2/170 (1%)

Query: 40  DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRE 99
           ++   TIG+DF  K L +    ++L +WDTAGQERFR+L  SY R +   I+VYD+T R+
Sbjct: 7   NNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQ 66

Query: 100 TFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSA 159
           +F N +  W +++ L    +D +  LVGNK D    R V+ EEG+  A+E+ ++F E SA
Sbjct: 67  SFENTTK-WIQDI-LNERGKDVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFHETSA 124

Query: 160 KTRENVEQCFEQLALKIMEVPSLLEEGSNVVKRNILKQKPENQSPPIGGC 209
           K   N++  F+++A K+  + +     +NVV   +      N    +  C
Sbjct: 125 KAGHNIKVLFKKIAAKLPNLDNSNSNDANVVDIQLTNNSNANDKNMLSKC 174

Length = 176

>gnl|CDD|133324 cd04124, RabL2, Rab GTPase-like family 2 (Rab-like2)

 Score =  107 bits (269), Expect = 1e-29
 Identities = 61/164 (37%), Positives = 88/164 (53%), Gaps = 14/164 (8%)

Query: 16  KILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLL----TVAGKRLKLTIWDTAG 71
           KI+L+GDS VGKS L+  F+   +D   P     + + L        GK + +  WDTAG
Sbjct: 2   KIILLGDSAVGKSKLVERFL---MDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAG 58

Query: 72  QERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVD 131
           QERF+T+ +SYY  A   ILV+DVTR+ T+ NLS  W +E+  Y     C+  +V NK+D
Sbjct: 59  QERFQTMHASYYHKAHACILVFDVTRKITYKNLSK-WYEELREYRPEIPCI--VVANKID 115

Query: 132 RDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALK 175
            D   V   ++    A++H       SA    NV + F+  A+K
Sbjct: 116 LDP-SVT--QKKFNFAEKHNLPLYYVSAADGTNVVKLFQD-AIK 155

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share > 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 161

>gnl|CDD|133377 cd04177, RSR1, RSR1/Bud1p family GTPase

 Score =  104 bits (262), Expect = 1e-28
 Identities = 62/166 (37%), Positives = 101/166 (60%), Gaps = 6/166 (3%)

Query: 15  FKILLIGDSGVGKSSLLVSFISSS-VDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQE 73
           +KI+++G  GVGKS+L V F+ +  ++   PTI   ++ K + + G++  L I DTAG E
Sbjct: 2   YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSYR-KQVEIDGRQCDLEILDTAGTE 60

Query: 74  RFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKM-LVGNKVDR 132
           +F  +   Y +  QG +LVY VT   +   L ++  +E  L   + D V M LVGNK D 
Sbjct: 61  QFTAMRELYIKSGQGFLLVYSVTSEASLNELGEL--REQVLRIKDSDNVPMVLVGNKADL 118

Query: 133 DSERVVSREEGIALAKEHGSL-FLECSAKTRENVEQCFEQLALKIM 177
           + +R VSRE+G++L+++ G++ F E SA+ R NV++ F  L  +I+
Sbjct: 119 EDDRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDLVRQII 164

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 168

>gnl|CDD|206712 cd04141, Rit_Rin_Ric, Ras-like protein in all tissues (Rit), Ras-like protein in neurons (Rin) and Ras-related protein which interacts with calmodulin (Ric)

 Score =  104 bits (260), Expect = 3e-28
 Identities = 59/163 (36%), Positives = 87/163 (53%), Gaps = 3/163 (1%)

Query: 15  FKILLIGDSGVGKSSLLVSFISSS-VDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQE 73
           +KI+++G  GVGKS++ + FIS S  D   PTI   +K +   +  +   L I DTAGQ 
Sbjct: 3   YKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKTQAR-IDNEPALLDILDTAGQA 61

Query: 74  RFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRD 133
            F  +   Y R  +G I+ Y VT R +F   S+ + + +      +D   +LVGNKVD +
Sbjct: 62  EFTAMRDQYMRCGEGFIICYSVTDRHSFQEASE-FKELITRVRLTEDIPLVLVGNKVDLE 120

Query: 134 SERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKI 176
            +R V+ EEG  LA+E    F E SA  R  ++  F  L  +I
Sbjct: 121 QQRQVTTEEGRNLAREFNCPFFETSAALRFYIDDAFHGLVREI 163

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to signal in parallel with the Ras pathway or stimulate the Ras pathway at some upstream point, and binding of calmodulin to Ric may negatively regulate Ric activity. Length = 172

>gnl|CDD|206694 cd04109, Rab28, Rab GTPase family 28 (Rab28)

 Score =  104 bits (260), Expect = 8e-28
 Identities = 64/200 (32%), Positives = 103/200 (51%), Gaps = 8/200 (4%)

Query: 15  FKILLIGDSGVGKSSLLVSFISSSVD-DLSPTIGVDFKIKLLTVAGK-RLKLTIWDTAGQ 72
            KI+++GD   GK+SL+  F           TIG+DF  + +T+ G   + L +WD  GQ
Sbjct: 1   IKIVVLGDGASGKTSLIRRFAQEGFGKSYKQTIGLDFFSRRITLPGSLNVTLQVWDIGGQ 60

Query: 73  ERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVD-LYSTNQDCVKM-LVGNKV 130
           +    +   Y  GAQ + LVYD+T  ++F NL D W   V  +   ++   KM LVGNK 
Sbjct: 61  QIGGKMLDKYIYGAQAVCLVYDITNSQSFENLED-WLSVVKKVNEESETKPKMVLVGNKT 119

Query: 131 DRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIMEV---PSLLEEGS 187
           D +  R V+ E+    A+E+    +  SAKT + V  CF+++A +++ V    + LE+  
Sbjct: 120 DLEHNRQVTAEKHARFAQENDMESIFVSAKTGDRVFLCFQRIAAELLGVKLSQAELEQSQ 179

Query: 188 NVVKRNILKQKPENQSPPIG 207
            VVK ++ +        P+ 
Sbjct: 180 RVVKADVSRYSERTLREPVS 199

Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumably the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 213

>gnl|CDD|206693 cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab34) and 36 (Rab36)

 Score =  103 bits (257), Expect = 9e-28
 Identities = 59/167 (35%), Positives = 93/167 (55%), Gaps = 4/167 (2%)

Query: 16  KILLIGDSGVGKSSLLVSFISSSVD-DLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER 74
           K++++GD  VGK+ L+  F     D +   TIGVDF+++   V G    L +WDTAGQER
Sbjct: 2   KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEVLGVPFSLQLWDTAGQER 61

Query: 75  FRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDS 134
           F+ + S+YYRGAQ II+V+D+T   +  + +  W ++    +     +  LVG K D  S
Sbjct: 62  FKCIASTYYRGAQAIIIVFDLTDVASLEH-TRQWLEDALKENDPSSVLLFLVGTKKDLSS 120

Query: 135 --ERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIMEV 179
             +  +  ++ I LA+E  + +   SA T ENV   F ++A    E+
Sbjct: 121 PAQYALMEQDAIKLAREMKAEYWAVSALTGENVRDFFFRVASLTFEL 167

Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 170

>gnl|CDD|133326 cd04126, Rab20, Rab GTPase family 20 (Rab20)

 Score =  103 bits (259), Expect = 1e-27
 Identities = 66/230 (28%), Positives = 99/230 (43%), Gaps = 46/230 (20%)

Query: 16  KILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERF 75
           K++L+GD  VGK+SLL  ++     D   T+G  F +K          ++IWDTAG+E+F
Sbjct: 2   KVVLLGDMNVGKTSLLHRYMERRFKDTVSTVGGAFYLK----QWGPYNISIWDTAGREQF 57

Query: 76  RTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYST-NQDCVKMLVGNKVDRDS 134
             L S Y RGA  +IL YDV+  ++   L     + + L  T N+DC+  +VGNK+D   
Sbjct: 58  HGLGSMYCRGAAAVILTYDVSNVQSLEEL---EDRFLGLTDTANEDCLFAVVGNKLDLTE 114

Query: 135 E-------------------RVVSREEGIALAKE--------------HGSLFLECSAKT 161
           E                   R V+ E+  A  K                  +  E SAKT
Sbjct: 115 EGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDLSPAAEKMCFETSAKT 174

Query: 162 RENVEQCFEQLALKIMEVP-SLLEEGSNVVKRNILKQKPENQSPPIGGCC 210
             NV++ FE   L  + +P  L +       +  +      +S     CC
Sbjct: 175 GYNVDELFE--YLFNLVLPLILAQRAEANRTQGTVNLPNPKRSK--SKCC 220

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 220

>gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases)

 Score =  101 bits (254), Expect = 2e-27
 Identities = 54/164 (32%), Positives = 78/164 (47%), Gaps = 12/164 (7%)

Query: 18  LLIGDSGVGKSSLLVSFISSSVDDLSPTIG--VDFKIKLLTVAGKRLKLTIWDTAGQERF 75
           +++G  GVGKSSLL + +   V ++S   G   D  + +  +   ++KL + DT G + F
Sbjct: 1   VVVGRGGVGKSSLLNALLGGEVGEVSDVPGTTRDPDVYVKELDKGKVKLVLVDTPGLDEF 60

Query: 76  -----RTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKV 130
                  L     RGA  I+LV D T RE+  +   +  +   L       +  LVGNK+
Sbjct: 61  GGLGREELARLLLRGADLILLVVDSTDRESEEDAKLLILRR--LRKEGIPII--LVGNKI 116

Query: 131 DRDSERVVSREE-GIALAKEHGSLFLECSAKTRENVEQCFEQLA 173
           D   ER V        LAK  G    E SAKT E V++ FE+L 
Sbjct: 117 DLLEEREVEELLRLEELAKILGVPVFEVSAKTGEGVDELFEKLI 160

Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161

>gnl|CDD|133318 cd04118, Rab24, Rab GTPase family 24 (Rab24)

 Score =  102 bits (255), Expect = 2e-27
 Identities = 63/201 (31%), Positives = 93/201 (46%), Gaps = 15/201 (7%)

Query: 16  KILLIGDSGVGKSSLLVSFISSS--VDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQE 73
           K++++G   VGK+SL+  ++     V     TIG  F  K + V  + + L IWDTAG E
Sbjct: 2   KVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSE 61

Query: 74  RFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVD-- 131
           R+  ++  YYRGA+  I+ YD+T   +F      W KE  L +  + C   L G K D  
Sbjct: 62  RYEAMSRIYYRGAKAAIVCYDLTDSSSFERAK-FWVKE--LQNLEEHCKIYLCGTKSDLI 118

Query: 132 --RDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIMEVPSLLEEGSNV 189
               S R V   +    A E  +   E S+KT +NV++ F+++A    +  S      N 
Sbjct: 119 EQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQKVA---EDFVSRANNQMNT 175

Query: 190 VKRNILKQKPENQSPPIGGCC 210
            K   L QK          CC
Sbjct: 176 EKGVDLGQKKN---SYFYSCC 193

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 193

>gnl|CDD|206643 cd00877, Ran, Ras-related nuclear proteins (Ran)/TC4 family of small GTPases

 Score =  100 bits (252), Expect = 5e-27
 Identities = 58/174 (33%), Positives = 91/174 (52%), Gaps = 16/174 (9%)

Query: 15  FKILLIGDSGVGKSSLLV-----SFISSSVDDLSPTIGVD-FKIKLLTVAGKRLKLTIWD 68
           FK++L+GD G GK++ +       F    V     T+GV+   +   T  GK ++  +WD
Sbjct: 1   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYV----ATLGVEVHPLDFHTNRGK-IRFNVWD 55

Query: 69  TAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGN 128
           TAGQE+F  L   YY   Q  I+++DVT R T+ N+ + W +++     N   V  L GN
Sbjct: 56  TAGQEKFGGLRDGYYIQGQCAIIMFDVTSRVTYKNVPN-WHRDLVRVCENIPIV--LCGN 112

Query: 129 KVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIMEVPSL 182
           KVD    +V  + + I   ++    + E SAK+  N E+ F  LA K++  P+L
Sbjct: 113 KVDIKDRKV--KPKQITFHRKKNLQYYEISAKSNYNFEKPFLWLARKLLGNPNL 164

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is bound to chromatin and confined to the nucleus. Ran itself is mobile and is actively imported into the nucleus by a mechanism involving NTF-2. Together with the compartmentalization of its regulators, this is thought to produce a relatively high concentration of RanGTP in the nucleus. Length = 166

>gnl|CDD|178620 PLN03071, PLN03071, GTP-binding nuclear protein Ran; Provisional

 Score = 99.4 bits (248), Expect = 5e-26
 Identities = 58/180 (32%), Positives = 93/180 (51%), Gaps = 8/180 (4%)

Query: 5   SGQSNSYDLSFKILLIGDSGVGKSSLLVSFISSSVD-DLSPTIGVD-FKIKLLTVAGKRL 62
             Q      SFK++++GD G GK++ +   ++   +    PTIGV+   +   T  GK +
Sbjct: 4   PNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGK-I 62

Query: 63  KLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCV 122
           +   WDTAGQE+F  L   YY   Q  I+++DVT R T+ N+   W +++     N   V
Sbjct: 63  RFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIV 121

Query: 123 KMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIMEVPSL 182
             L GNKVD  + +V  + + +   ++    + E SAK+  N E+ F  LA K+   P+L
Sbjct: 122 --LCGNKVDVKNRQV--KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNL 177

Length = 219

>gnl|CDD|206688 cd04101, RabL4, Rab GTPase-like family 4 (Rab-like4)

 Score = 96.8 bits (241), Expect = 2e-25
 Identities = 53/163 (32%), Positives = 77/163 (47%), Gaps = 6/163 (3%)

Query: 16  KILLIGDSGVGKSSLLVSFISSSV---DDLSPTIGVDFKIKLLTV--AGKRLKLTIWDTA 70
           +  ++GD  VGKS+L+  F S       + + T G D  +K + V      ++L I+D+A
Sbjct: 2   QCAVVGDPAVGKSALVQMFHSDGATFQKNYTMTTGCDLVVKTVPVPDTSDSVELFIFDSA 61

Query: 71  GQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKV 130
           GQE F  +  + +     + +VYDVT   +F N S  W   V  +S       +LVGNK 
Sbjct: 62  GQELFSDMVENVWEQPAVVCVVYDVTNEVSFNNCSR-WINRVRTHSHGLHTPGVLVGNKC 120

Query: 131 DRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLA 173
           D    R V   +  ALA+ +   F E SAK     E  F  LA
Sbjct: 121 DLTDRREVDAAQAQALAQANTLKFYETSAKEGVGYEAPFLSLA 163

RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown. Length = 167

>gnl|CDD|206713 cd04146, RERG_RasL11_like, Ras-related and Estrogen-Regulated Growth inhibitor (RERG) and Ras-like 11 (RasL11)-like families

 Score = 93.9 bits (234), Expect = 2e-24
 Identities = 55/162 (33%), Positives = 83/162 (51%), Gaps = 7/162 (4%)

Query: 16  KILLIGDSGVGKSSLLVSFISSS-VDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER 74
           KI ++G SGVGKS+L V F++   + +  P +   +  + +T+ G+++ L I DT GQ++
Sbjct: 1   KIAVLGASGVGKSALTVRFLTKRFIGEYEPNLESLYS-RQVTIDGEQVSLEIQDTPGQQQ 59

Query: 75  FRT--LTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQ-DCVKMLVGNKVD 131
                      R A G +LVY +T R +F  +S +    +        +   +LVGNK D
Sbjct: 60  NEDPESLERSLRWADGFVLVYSITDRSSFDVVSQLLQL-IREIKKRDGEIPVILVGNKAD 118

Query: 132 RDSERVVSREEGIALAKEHGSLFLECSA-KTRENVEQCFEQL 172
               R VS EEG  LA E G LF E SA +    V+  F +L
Sbjct: 119 LLHSRQVSTEEGQKLALELGCLFFEVSAAENYLEVQNVFHEL 160

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tumor suppressor activity. Length = 166

>gnl|CDD|206711 cd04140, ARHI_like, A Ras homolog member I (ARHI)

 Score = 93.4 bits (232), Expect = 4e-24
 Identities = 50/160 (31%), Positives = 84/160 (52%), Gaps = 3/160 (1%)

Query: 15  FKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQE 73
           +++++ G  GVGKSSL++ F+  +  +   PTI   ++ ++++ +     L I DT G  
Sbjct: 2   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYR-QVISCSKSICTLQITDTTGSH 60

Query: 74  RFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTN-QDCVKMLVGNKVDR 132
           +F  +           ILVY +T +++   L  ++    ++   N +    MLVGNK D 
Sbjct: 61  QFPAMQRLSISKGHAFILVYSITSKQSLEELKPIYELICEIKGNNLEKIPIMLVGNKCDE 120

Query: 133 DSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQL 172
              R VS  EG ALA+     F+E SAKT  NV++ F++L
Sbjct: 121 SPSREVSSSEGAALARTWNCAFMETSAKTNHNVQELFQEL 160

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|133330 cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (Wrch-1) is a Rho family GTPase similar to Cdc42

 Score = 93.2 bits (232), Expect = 5e-24
 Identities = 52/169 (30%), Positives = 91/169 (53%), Gaps = 17/169 (10%)

Query: 16  KILLIGDSGVGKSSLLVSFISSSVD-DLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER 74
           K +L+GD  VGK+SL+VS+ ++    +  PT   +F + +L V GK ++L + DTAGQ+ 
Sbjct: 2   KCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFSVVVL-VDGKPVRLQLCDTAGQDE 60

Query: 75  FRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVG------- 127
           F  L    Y      +L + V    +F N+S+ W  E+  ++     +  LVG       
Sbjct: 61  FDKLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAPII--LVGTQADLRT 118

Query: 128 -----NKVDRDSERVVSREEGIALAKEHGSL-FLECSAKTRENVEQCFE 170
                 ++ R  E+ VS+    ALA++ G+  ++ECSA T++N+++ F+
Sbjct: 119 DVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALTQKNLKEVFD 167

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173

>gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain

 Score = 90.9 bits (226), Expect = 3e-23
 Identities = 42/162 (25%), Positives = 71/162 (43%), Gaps = 11/162 (6%)

Query: 15  FKILLIGDSGVGKSSLLVSFI--SSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQ 72
            KI+++GD  VGKS+LL   +    S+ +  P    ++   ++   GK  K  + DTAGQ
Sbjct: 2   IKIVIVGDPNVGKSTLLNRLLGNKISITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQ 61

Query: 73  ERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDC----VKMLVGN 128
           E +  +   YYR  +  + V+D+        L      E                +LVGN
Sbjct: 62  EDYDAIRRLYYRAVESSLRVFDI----VILVLDVEEILEKQTKEIIHHAESGVPIILVGN 117

Query: 129 KVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFE 170
           K+D    + +        AK +G   +  SA+T +N++  F+
Sbjct: 118 KIDLRDAK-LKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFK 158

Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162

>gnl|CDD|240284 PTZ00132, PTZ00132, GTP-binding nuclear protein Ran; Provisional

 Score = 91.7 bits (228), Expect = 4e-23
 Identities = 59/178 (33%), Positives = 95/178 (53%), Gaps = 8/178 (4%)

Query: 7   QSNSYDLSFKILLIGDSGVGKSSLLVSFISSSVDD-LSPTIGVDFK-IKLLTVAGKRLKL 64
           Q       FK++L+GD GVGK++ +   ++   +    PT+GV+   +K  T  G  +  
Sbjct: 2   QQMDEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGP-ICF 60

Query: 65  TIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKM 124
            +WDTAGQE+F  L   YY   Q  I+++DVT R T+ N+ + W +++     N   V  
Sbjct: 61  NVWDTAGQEKFGGLRDGYYIKGQCAIIMFDVTSRITYKNVPN-WHRDIVRVCENIPIV-- 117

Query: 125 LVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIMEVPSL 182
           LVGNKVD    +V +R+  I   ++    + + SAK+  N E+ F  LA ++   P+L
Sbjct: 118 LVGNKVDVKDRQVKARQ--ITFHRKKNLQYYDISAKSNYNFEKPFLWLARRLTNDPNL 173

Length = 215

>gnl|CDD|206644 cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf-like (Arl) small GTPases

 Score = 88.0 bits (219), Expect = 4e-22
 Identities = 46/164 (28%), Positives = 73/164 (44%), Gaps = 16/164 (9%)

Query: 16  KILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERF 75
           +IL++G  G GK+++L       V    PTIG  F ++  TV  K +K T+WD  GQ++ 
Sbjct: 1   RILMLGLDGAGKTTILYKLKLGEVVTTIPTIG--FNVE--TVEYKNVKFTVWDVGGQDKI 56

Query: 76  RTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEV--DLYSTNQ--DCVKMLVGNKVD 131
           R L   YY    G+I V D + RE         AK     L +  +      +++ NK D
Sbjct: 57  RPLWKHYYENTDGLIFVVDSSDRERI-----EEAKNELHKLLNEEELKGAPLLILANKQD 111

Query: 132 R---DSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQL 172
                +E  +    G+   K        CSA T + +++  + L
Sbjct: 112 LPGALTESELIELLGLESIKGRRWHIQPCSAVTGDGLDEGLDWL 155

Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thus, despite their significant sequence homologies, Arf family proteins may regulate unrelated functions. Length = 158

>gnl|CDD|206706 cd04134, Rho3, Ras homology family 3 (Rho3) of small guanosine triphosphatases (GTPases)

 Score = 87.2 bits (216), Expect = 1e-21
 Identities = 55/169 (32%), Positives = 85/169 (50%), Gaps = 15/169 (8%)

Query: 16  KILLIGDSGVGKSSLLVSFISSSVDDL-SPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER 74
           K++++GD   GK+SLL  F       +  PT+  ++ I  + V G  ++L++WDTAGQE 
Sbjct: 2   KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENY-IHDIFVDGLAVELSLWDTAGQEE 60

Query: 75  FRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVK-MLVGNKVD-R 132
           F  L S  Y     I+L + V   ++  N+   W  E+     +   VK +LV  K D R
Sbjct: 61  FDRLRSLSYADTHVIMLCFSVDNPDSLENVESKWLAEI---RHHCPGVKLVLVALKCDLR 117

Query: 133 DSE-------RVVSREEGIALAKEHGSL-FLECSAKTRENVEQCFEQLA 173
           +           +S EEG+A+AK   +  +LECSAK    V + F + A
Sbjct: 118 EPRNERDRGTHTISYEEGLAVAKRINACRYLECSAKLNRGVNEAFTEAA 166

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 185

>gnl|CDD|206662 cd01870, RhoA_like, Ras homology family A (RhoA)-like includes RhoA, RhoB and RhoC

 Score = 86.3 bits (214), Expect = 2e-21
 Identities = 55/172 (31%), Positives = 92/172 (53%), Gaps = 23/172 (13%)

Query: 16  KILLIGDSGVGKSSLLVSFISSSVDDL-SPTIGVDFKIKLLTVAGKRLKLTIWDTAGQE- 73
           K++++GD   GK+ LL+ F      ++  PT+  ++ +  + V GK+++L +WDTAGQE 
Sbjct: 3   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 61

Query: 74  --RFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVD 131
             R R L+   Y     I++ + +   ++  N+ + W  EV  +  N   +  LVGNK D
Sbjct: 62  YDRLRPLS---YPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII--LVGNKKD 116

Query: 132 ------------RDSERVVSREEGIALAKEHGSL-FLECSAKTRENVEQCFE 170
                       +  +  V  EEG A+A++ G+  +LECSAKT+E V + FE
Sbjct: 117 LRNDEHTIRELAKMKQEPVKPEEGRAMAEKIGAFGYLECSAKTKEGVREVFE 168

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranylgeranylated forms; however, RhoB can be present in palmitoylated, farnesylated, and geranylgeranylated forms. RhoA and RhoC are highly relevant for tumor progression and invasiveness; however, RhoB has recently been suggested to be a tumor suppressor. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175

>gnl|CDD|206715 cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfamily of Ras GTPases

 Score = 87.1 bits (216), Expect = 3e-21
 Identities = 55/160 (34%), Positives = 82/160 (51%), Gaps = 8/160 (5%)

Query: 15  FKILLIGDSGVGKSSLLVSFISSSVDDLSP--TIGVDFKIKLLTVAGKRLKLTIWDTAGQ 72
           ++++L+GDSGVGKSSL   F ++ V + S     G D   + ++V G+   L ++D   Q
Sbjct: 1   YRVVLLGDSGVGKSSLANIF-TAGVYEDSAYEASGDDTYERTVSVDGEEATLVVYDHWEQ 59

Query: 73  ERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQ--DCVKMLVGNKV 130
           E    L  S  +     ++VY VT R +F   S++    + L    Q  D   +LVGNK 
Sbjct: 60  EDGMWLEDSCMQVGDAYVIVYSVTDRSSFEKASEL---RIQLRRARQAEDIPIILVGNKS 116

Query: 131 DRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFE 170
           D    R VS +EG A A      F+E SA  + NV++ FE
Sbjct: 117 DLVRSREVSVQEGRACAVVFDCKFIETSAALQHNVDELFE 156

RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ras superfamily members. The N-terminal extension is not conserved among family members; the C-terminal extension is reported to be conserved among the family and lack the CaaX prenylation motif typical of membrane-associated Ras proteins. However, a putative CaaX motif has been identified in the alignment of the C-terminal residues of this CD. Length = 219

>gnl|CDD|206701 cd04128, Spg1, Septum-promoting GTPase (Spg1)

 Score = 84.8 bits (210), Expect = 1e-20
 Identities = 48/182 (26%), Positives = 92/182 (50%), Gaps = 13/182 (7%)

Query: 16  KILLIGDSGVGKSSLLVSFISSSVD-DLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER 74
           KI L+GD+ +GK+SL+V ++    D +   T+GV+F  K +++ G  +  +IWD  GQ  
Sbjct: 2   KIGLLGDAQIGKTSLMVKYVEGEFDEEYIQTLGVNFMEKTISIRGTEITFSIWDLGGQRE 61

Query: 75  FRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDR-- 132
           F  +     + A  I+ ++D+TR+ T  ++ + W ++      N+  + +LVG K D   
Sbjct: 62  FINMLPLVCKDAVAILFMFDLTRKSTLNSIKE-WYRQA--RGFNKTAIPILVGTKYDLFA 118

Query: 133 -----DSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIMEVPSLLEEGS 187
                + E +   ++    AK   +  + CS     NV++ F+ +  K+ ++P  + E  
Sbjct: 119 DLPPEEQEEIT--KQARKYAKAMKAPLIFCSTSHSINVQKIFKFVLAKVFDLPLTIPEIL 176

Query: 188 NV 189
            V
Sbjct: 177 TV 178

Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 182

>gnl|CDD|128473 smart00176, RAN, Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

 Score = 82.8 bits (204), Expect = 1e-19
 Identities = 49/164 (29%), Positives = 85/164 (51%), Gaps = 6/164 (3%)

Query: 20  IGDSGVGKSSLLVSFISSSVDD-LSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTL 78
           +GD G GK++ +   ++   +     T+GV+    +       ++  +WDTAGQE+F  L
Sbjct: 1   VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGL 60

Query: 79  TSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVV 138
              YY   Q  I+++DVT R T+ N+ + W +  DL    ++   +L GNKVD    +V 
Sbjct: 61  RDGYYIQGQCAIIMFDVTARVTYKNVPN-WHR--DLVRVCENIPIVLCGNKVDVKDRKVK 117

Query: 139 SREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIMEVPSL 182
           ++   I   ++    + + SAK+  N E+ F  LA K++  P+L
Sbjct: 118 AKS--ITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNL 159

Ran is involved in the active transport of proteins through nuclear pores. Length = 200

>gnl|CDD|206705 cd04133, Rop_like, Rho-related protein from plants (Rop)-like

 Score = 79.9 bits (197), Expect = 6e-19
 Identities = 53/167 (31%), Positives = 91/167 (54%), Gaps = 15/167 (8%)

Query: 16  KILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER 74
           K + +GD  VGK+ +L+S+ S++   D  PT+  +F   +  V G  + L +WDTAGQE 
Sbjct: 3   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANV-VVDGNTVNLGLWDTAGQED 61

Query: 75  FRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVD-RD 133
           +  L    YRGA   +L + +  + ++ N+   W  E+  Y+     V  LVG K+D RD
Sbjct: 62  YNRLRPLSYRGADVFLLAFSLISKASYENVLKKWIPELRHYAPGVPIV--LVGTKLDLRD 119

Query: 134 SERV---------VSREEGIALAKEHGS-LFLECSAKTRENVEQCFE 170
            ++          ++  +G  L K+ G+  ++ECS+KT++NV+  F+
Sbjct: 120 DKQFFADHPGAVPITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFD 166

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example, Rop1, Rop3, and Rop5 are all involved in pollen-tube growth; Rop2 plays a role in response to low-oxygen environments, cell-morphology, and root-hair development; root-hair development is also regulated by Rop4 and Rop6; Rop6 is also responsible for ABA response, and ABA response is also regulated by Rop10. Plants retain some of the regulatory mechanisms that are shared by other members of the Rho family, but have also developed a number of unique modes for regulating Rops. Unique RhoGEFs have been identified that are exclusively active toward Rop proteins, such as those containing the domain PRONE (plant-specific Rop nucleotide exchanger). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173

>gnl|CDD|206703 cd04131, Rnd, Rho family GTPase subfamily Rnd includes Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8

 Score = 77.9 bits (192), Expect = 4e-18
 Identities = 54/170 (31%), Positives = 89/170 (52%), Gaps = 18/170 (10%)

Query: 16  KILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER 74
           KI+L+GDS  GK++LL  F   S  ++  PT+  ++      V  +R++L++WDT+G   
Sbjct: 3   KIVLVGDSQCGKTALLQVFAKDSFPENYVPTVFENYTASF-EVDKQRIELSLWDTSGSPY 61

Query: 75  FRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDS 134
           +  +    Y  +  +++ +D++R ET  ++   W  EV  +  N   +  LVG K D  +
Sbjct: 62  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEVREFCPNTPVL--LVGCKSDLRT 119

Query: 135 E------------RVVSREEGIALAKEHGSL-FLECSAKTREN-VEQCFE 170
           +              VS E+G  LAK+ G+  ++ECSAKT EN V   FE
Sbjct: 120 DLSTLTELSNKRQIPVSHEQGRNLAKQIGAAAYVECSAKTSENSVRDVFE 169

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 176

>gnl|CDD|206663 cd01871, Rac1_like, Ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)-like consists of Rac1, Rac2 and Rac3

 Score = 77.5 bits (191), Expect = 5e-18
 Identities = 51/180 (28%), Positives = 88/180 (48%), Gaps = 33/180 (18%)

Query: 14  SFKILLIGDSGVGKSSLLVSF---------ISSSVDDLSPTIGVDFKIKLLTVAGKRLKL 64
           + K +++GD  VGK+ LL+S+         I +  D+ S  + VD         GK + L
Sbjct: 1   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVD---------GKPVNL 51

Query: 65  TIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKM 124
            +WDTAGQE +  L    Y      ++ + +    +F N+   W  EV  +  N   +  
Sbjct: 52  GLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPII-- 109

Query: 125 LVGNKVD--RDSERV----------VSREEGIALAKEHGSL-FLECSAKTRENVEQCFEQ 171
           LVG K+D   D + +          ++  +G+A+AKE G++ +LECSA T+  ++  F++
Sbjct: 110 LVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 169

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleotide association and is more efficiently activated by the RacGEF Tiam1. Both Rac1 and Rac3 have been implicated in the regulation of cell migration and invasion in human metastatic breast cancer. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174

>gnl|CDD|206707 cd04135, Tc10, Rho GTPase TC10 (Tc10)

 Score = 77.4 bits (190), Expect = 6e-18
 Identities = 51/177 (28%), Positives = 96/177 (54%), Gaps = 17/177 (9%)

Query: 15  FKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQE 73
            K +++GD  VGK+ LL+S+ + +  ++  PT+   + + + TV GK+  L ++DTAGQE
Sbjct: 1   LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSV-TVGGKQYLLGLYDTAGQE 59

Query: 74  RFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVD-R 132
            +  L    Y      ++ + V    +F N+ + W  E+  Y+ N   +  L+G ++D R
Sbjct: 60  DYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPYL--LIGTQIDLR 117

Query: 133 D-----------SERVVSREEGIALAKEHGS-LFLECSAKTRENVEQCFEQLALKIM 177
           D            E+ ++ E+G  LAKE G+  ++ECSA T++ ++  F++  + I+
Sbjct: 118 DDPKTLARLNDMKEKPITVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAIL 174

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interactions with CFTR-associated ligand (CAL). The GTP-bound form of TC10 directs the trafficking of CFTR from the juxtanuclear region to the secretory pathway toward the plasma membrane, away from CAL-mediated DFTR degradation in the lysosome. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174

>gnl|CDD|206702 cd04129, Rho2, Ras homology family 2 (Rho2) of small guanosine triphosphatases (GTPases)

 Score = 75.3 bits (185), Expect = 5e-17
 Identities = 49/167 (29%), Positives = 84/167 (50%), Gaps = 15/167 (8%)

Query: 16  KILLIGDSGVGKSSLLVSF-ISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER 74
           K++++GD   GK+SLL  F +    ++  PT+  ++ +    V GK ++L +WDTAGQE 
Sbjct: 3   KLVIVGDGACGKTSLLYVFTLGEFPEEYHPTVFENY-VTDCRVDGKPVQLALWDTAGQEE 61

Query: 75  FRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVD--- 131
           +  L    Y  A  I++ + +   ++  N+   W +EV  Y  N   +  LVG K D   
Sbjct: 62  YERLRPLSYSKAHVILIGFAIDTPDSLENVRTKWIEEVRRYCPNVPVI--LVGLKKDLRQ 119

Query: 132 -------RDSERVVSREEGIALAKEHGSL-FLECSAKTRENVEQCFE 170
                    ++  V  ++   +A+  G+  ++ECSA T E V+  FE
Sbjct: 120 EAVAKGNYATDEFVPIQQAKLVARAIGAKKYMECSALTGEGVDDVFE 166

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors). Length = 190

>gnl|CDD|206680 cd01893, Miro1, Mitochondrial Rho family 1 (Miro1), N-terminal

 Score = 74.7 bits (184), Expect = 5e-17
 Identities = 56/167 (33%), Positives = 76/167 (45%), Gaps = 25/167 (14%)

Query: 16  KILLIGDSGVGKSSLLVSFISSSVDDLSP------TIGVDFKIKLLTVAGKRLKLTIWDT 69
           +I+LIGD GVGKSSL++S +S    +  P      TI  D       V  +R+  TI DT
Sbjct: 4   RIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLPEITIPAD-------VTPERVPTTIVDT 56

Query: 70  AGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVK---MLV 126
           + + + R   ++  R A  I LVY V R  T   +   W   +      +  VK   +LV
Sbjct: 57  SSRPQDRANLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLI-----RRLGVKVPIILV 111

Query: 127 GNKVD-RDSERVVSREEGIALAKEHGS---LFLECSAKTRENVEQCF 169
           GNK D RD       EE +             +ECSAKT  NV + F
Sbjct: 112 GNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVF 158

Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. Length = 168

>gnl|CDD|133277 cd01875, RhoG, Ras homolog family, member G (RhoG) of small guanosine triphosphatases (GTPases)

 Score = 74.3 bits (182), Expect = 1e-16
 Identities = 47/172 (27%), Positives = 88/172 (51%), Gaps = 17/172 (9%)

Query: 14  SFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQ 72
           S K +++GD  VGK+ LL+ + +++   +  PT+  ++  +   V G+ + L +WDTAGQ
Sbjct: 3   SIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQT-AVDGRTVSLNLWDTAGQ 61

Query: 73  ERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVD- 131
           E +  L +  Y      I+ + +    ++ N+   W  EV  +  N     +LVG K D 
Sbjct: 62  EEYDRLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCPNVPI--LLVGTKKDL 119

Query: 132 RDSERVVSR-----------EEGIALAKEHGSL-FLECSAKTRENVEQCFEQ 171
           R+    + +           ++G ALAK+  ++ +LECSA  ++ V++ F +
Sbjct: 120 RNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSALNQDGVKEVFAE 171

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 191

>gnl|CDD|219856 pfam08477, Miro, Miro-like protein

 Score = 70.9 bits (174), Expect = 4e-16
 Identities = 38/115 (33%), Positives = 55/115 (47%), Gaps = 1/115 (0%)

Query: 16  KILLIGDSGVGKSSLLVSFISSS-VDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER 74
           K+++IGD G GKSSLL   +      +     G    +  L V G    L IWD  G+E 
Sbjct: 1   KVVVIGDKGSGKSSLLSQLVGGEFPPEPLEIQGDTLAVDTLEVDGDTGLLNIWDFGGREE 60

Query: 75  FRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNK 129
            +     + + A  I+LVYD+T RE+   +S + A   +L         +LVGNK
Sbjct: 61  LKFEHIIFMKWADAILLVYDLTDRESLNEVSRLIAWLPNLRKLGGKIPVILVGNK 115

Mitochondrial Rho proteins (Miro-1, and Miro-2), are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (pfam00036), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis. Length = 116

>gnl|CDD|133343 cd04143, Rhes_like, Ras homolog enriched in striatum (Rhes) and activator of G-protein signaling 1 (Dexras1/AGS1)

 Score = 73.6 bits (181), Expect = 5e-16
 Identities = 47/174 (27%), Positives = 82/174 (47%), Gaps = 22/174 (12%)

Query: 15  FKILLIGDSGVGKSSLLVSFISSSVDD-LSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQ- 72
           ++++++G S VGK++++  F+    ++  +PTI  DF  KL ++ G+  +L I DT+G  
Sbjct: 1   YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNH 59

Query: 73  -----ERFRTLTSSYYRGAQGIILVYDVTRRETFT-------NLSDVWAKEVDLYSTNQD 120
                 R   LT   +      ILV+ +  RE+F         + +  +   +    N  
Sbjct: 60  PFPAMRRLSILTGDVF------ILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVK 113

Query: 121 CVKMLVGNKVDRDSERVVSREEGIAL-AKEHGSLFLECSAKTRENVEQCFEQLA 173
              ++ GNK DRD  R V R+E   L   +    + E SAK   N+++ F  L 
Sbjct: 114 IPMVICGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNLDEMFRALF 167

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression levels in other tissues. Dexras1 localizes primarily to the cytoplasm, and is a critical regulator of the circadian master clock to photic and nonphotic input. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 247

>gnl|CDD|206664 cd01874, Cdc42, cell division cycle 42 (Cdc42) is a small GTPase of the Rho family

 Score = 71.8 bits (176), Expect = 7e-16
 Identities = 40/172 (23%), Positives = 90/172 (52%), Gaps = 17/172 (9%)

Query: 14  SFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQ 72
           + K +++GD  VGK+ LL+S+ ++    +  PT+  ++ + ++ + G+   L ++DTAGQ
Sbjct: 1   TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQ 59

Query: 73  ERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVD- 131
           E +  L    Y      ++ + V    +F N+ + W  E+  +        +LVG ++D 
Sbjct: 60  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPF--LLVGTQIDL 117

Query: 132 -----------RDSERVVSREEGIALAKEHGSL-FLECSAKTRENVEQCFEQ 171
                      ++ ++ ++ E G  LA++  ++ ++ECSA T++ ++  F++
Sbjct: 118 RDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALTQKGLKNVFDE 169

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addition, Cdc42 has been implicated in a number of human diseases through interactions with its regulators and downstream effectors. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175

>gnl|CDD|206735 cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases

 Score = 70.5 bits (172), Expect = 2e-15
 Identities = 43/169 (25%), Positives = 85/169 (50%), Gaps = 17/169 (10%)

Query: 10  SYDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWD 68
           + ++  KI+++GDS  GK++LL  F      ++  PT+  ++      +  +R++L++WD
Sbjct: 1   NQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASF-EIDTQRIELSLWD 59

Query: 69  TAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGN 128
           T+G   +  +    Y  +  +++ +D++R ET  ++   W  E+  +  N     +LVG 
Sbjct: 60  TSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKM--LLVGC 117

Query: 129 KVD------------RDSERVVSREEGIALAKEHGSL-FLECSAKTREN 164
           K D               +  VS ++G  +AK+ G+  ++ECSA   EN
Sbjct: 118 KSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSEN 166

Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight junction formation. Rnd3/RhoE is underexpressed in prostate cancer cells both in vitro and in vivo; re-expression of Rnd3/RhoE suppresses cell cycle progression and increases apoptosis, suggesting it may play a role in tumor suppression. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 182

>gnl|CDD|200938 pfam00025, Arf, ADP-ribosylation factor family

 Score = 68.8 bits (169), Expect = 8e-15
 Identities = 46/172 (26%), Positives = 77/172 (44%), Gaps = 18/172 (10%)

Query: 10  SYDLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDT 69
            ++   +IL++G    GK+++L       +    PTIG  F ++  TV  K +K T+WD 
Sbjct: 10  GWNKEMRILILGLDNAGKTTILYKLKLGEIVTTIPTIG--FNVE--TVTYKNVKFTVWDV 65

Query: 70  AGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYS-----TNQDCVKM 124
            GQE  R L  +Y+     +I V D   R+         AKE +L++        D   +
Sbjct: 66  GGQESLRPLWRNYFPNTDAVIFVVDSADRDRIEE-----AKE-ELHALLNEEELADAPLL 119

Query: 125 LVGNKVDRD---SERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLA 173
           ++ NK D     SE  +    G+   K+       CSA T E +++  + L+
Sbjct: 120 ILANKQDLPGAMSEAEIRELLGLHELKDRPWEIQGCSAVTGEGLDEGLDWLS 171

Pfam combines a number of different Prosite families together. Length = 174

>gnl|CDD|177661 PLN00023, PLN00023, GTP-binding protein; Provisional

 Score = 68.7 bits (168), Expect = 7e-14
 Identities = 37/111 (33%), Positives = 60/111 (54%), Gaps = 15/111 (13%)

Query: 16  KILLIGDSGVGKSSLLVSFI-SSSVDDLSPTIGVDFKIKLLTV-------------AGKR 61
           ++L++GDSGVGKSSL+   +  SS+     TIG    +K +T              + + 
Sbjct: 23  RVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERD 82

Query: 62  LKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEV 112
             + +WD +G ER++   S +Y    G+I V+D+++R T T+L   WA EV
Sbjct: 83  FFVELWDVSGHERYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQK-WASEV 132

Length = 334

>gnl|CDD|133353 cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8) GTPases

 Score = 63.1 bits (154), Expect = 1e-12
 Identities = 43/165 (26%), Positives = 77/165 (46%), Gaps = 14/165 (8%)

Query: 15  FKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER 74
           +K++++G    GK+++L  F+   V   SPTIG + +     +  K ++  +WD  GQE 
Sbjct: 16  YKVIIVGLDNAGKTTILYQFLLGEVVHTSPTIGSNVEE----IVYKNIRFLMWDIGGQES 71

Query: 75  FRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEV---DLYSTNQDCVKMLVGNKVD 131
            R+  ++YY     +ILV D T RE      +   K +   DL    +  V +++ NK D
Sbjct: 72  LRSSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDL----RKAVLLVLANKQD 127

Query: 132 -RDSERVVSREEGIALA--KEHGSLFLECSAKTRENVEQCFEQLA 173
            + +       E + L   ++H      C A T E + +  + +A
Sbjct: 128 LKGAMTPAEISESLGLTSIRDHTWHIQGCCALTGEGLPEGLDWIA 172

Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date. Length = 174

>gnl|CDD|206714 cd04147, Ras_dva, Ras - dorsal-ventral anterior localization (Ras-dva) family

 Score = 62.9 bits (153), Expect = 2e-12
 Identities = 40/158 (25%), Positives = 80/158 (50%), Gaps = 2/158 (1%)

Query: 16  KILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERF 75
           +++ +G +GVGK++L+  F+  + +        +   K   VAG ++ + I DT+G   F
Sbjct: 1   RLVFMGAAGVGKTALIQRFLYDTFEPKHRRTVEELHSKEYEVAGVKVTIDILDTSGSYSF 60

Query: 76  RTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSE 135
             +     +      LVY V   E+F  +  +  + +++       + ++VGNK+D  +E
Sbjct: 61  PAMRKLSIQNGDAFALVYSVDDPESFEEVKRLREEILEVKEDKFVPI-VVVGNKIDSLAE 119

Query: 136 RVVSREEGIALAK-EHGSLFLECSAKTRENVEQCFEQL 172
           R V   + ++  + +  + F+E SAK  ENV + F++L
Sbjct: 120 RQVEAADALSTVELDWNNGFVEASAKDNENVTEVFKEL 157

Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 197

>gnl|CDD|128474 smart00177, ARF, ARF-like small GTPases; ARF, ADP-ribosylation factor

 Score = 62.2 bits (151), Expect = 2e-12
 Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 4/84 (4%)

Query: 16 KILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERF 75
          +IL++G    GK+++L            PTIG + +    TV  K +  T+WD  GQ++ 
Sbjct: 15 RILMVGLDAAGKTTILYKLKLGESVTTIPTIGFNVE----TVTYKNISFTVWDVGGQDKI 70

Query: 76 RTLTSSYYRGAQGIILVYDVTRRE 99
          R L   YY   QG+I V D   R+
Sbjct: 71 RPLWRHYYTNTQGLIFVVDSNDRD 94

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop). Length = 175

>gnl|CDD|206736 cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases

 Score = 62.7 bits (152), Expect = 3e-12
 Identities = 43/163 (26%), Positives = 85/163 (52%), Gaps = 17/163 (10%)

Query: 16  KILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER 74
           KI+++GD+  GK++LL  F   +  +   PT+  ++      +   R++L +WDT+G   
Sbjct: 3   KIVVVGDTQCGKTALLHVFAKDNYPESYVPTVFENYTASF-EIDKHRIELNMWDTSGSSY 61

Query: 75  FRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDS 134
           +  +    Y  +  +++ +D++R ET  ++   W  E   +  N   V  LVG K+D  +
Sbjct: 62  YDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKLV--LVGCKLDMRT 119

Query: 135 ----------ERV--VSREEGIALAKEHGSL-FLECSAKTREN 164
                     +R+  V+ E+G  LA++ G++ ++ECS++  EN
Sbjct: 120 DLSTLRELSKQRLIPVTHEQGSLLARQLGAVAYVECSSRMSEN 162

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in spermatocytes and early spermatids, with male-germ-cell Rac GTPase-activating protein (MgcRacGAP), where it localizes to the Golgi-derived pro-acrosomal vesicle. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 221

>gnl|CDD|206689 cd04102, RabL3, Rab GTPase-like family 3 (Rab-like3)

 Score = 61.1 bits (148), Expect = 1e-11
 Identities = 41/149 (27%), Positives = 69/149 (46%), Gaps = 31/149 (20%)

Query: 16  KILLIGDSGVGKSSLLVSFI--SSSVDDLSPTIGVDFKIKLLTV-----AGKRLKLTIWD 68
           K+L++GDSGVGKSSL V  +  +  + + S T+G    ++  T        K   + +WD
Sbjct: 2   KVLVLGDSGVGKSSL-VHLLCKNQVLGNPSWTVGCSVDVRHHTYGEGTPEEKTFYVELWD 60

Query: 69  TAGQ----ERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEV---DLYS----- 116
             G     E  ++  + +Y    GII V+D+T +++  NL   W+ E    D +      
Sbjct: 61  VGGSVGSAESVKSTRAVFYNQINGIIFVHDLTNKKSSQNLYR-WSLEALNRDTFPAGLLV 119

Query: 117 TNQDCVK----------MLVGNKVDRDSE 135
           TN D             +++G K+D+  E
Sbjct: 120 TNGDYDSEQFAGNPVPLLVIGTKLDQIPE 148

RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown. Length = 204

>gnl|CDD|206737 cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases

 Score = 60.5 bits (146), Expect = 3e-11
 Identities = 50/189 (26%), Positives = 91/189 (48%), Gaps = 18/189 (9%)

Query: 16  KILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER 74
           K++L+GD   GK+++L         +   PT+  ++   L T   +R++L++WDT+G   
Sbjct: 15  KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLET-EEQRVELSLWDTSGSPY 73

Query: 75  FRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVD--- 131
           +  +    Y  +  ++L +D++R E F +    W  E+  Y  +     +L+G K D   
Sbjct: 74  YDNVRPLCYSDSDAVLLCFDISRPEIFDSALKKWRAEILDYCPSTRI--LLIGCKTDLRT 131

Query: 132 ---------RDSERVVSREEGIALAKEHGS-LFLECSAKTRE-NVEQCFEQLALKIMEVP 180
                       +  +S E+G A+AK+ G+  +LECSA T E ++   F   +L  +   
Sbjct: 132 DLSTLMELSNQKQAPISYEQGCAMAKQLGAEAYLECSAFTSEKSIHSIFRTASLLCINKL 191

Query: 181 SLLEEGSNV 189
           S L + S V
Sbjct: 192 SPLAKKSPV 200

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 232

>gnl|CDD|206717 cd04150, Arf1_5_like, ADP-ribosylation factor-1 (Arf1) and ADP-ribosylation factor-5 (Arf5)

 Score = 58.6 bits (142), Expect = 5e-11
 Identities = 29/84 (34%), Positives = 45/84 (53%), Gaps = 4/84 (4%)

Query: 16 KILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERF 75
          +IL++G    GK+++L       +    PTIG  F ++  TV  K +  T+WD  GQ++ 
Sbjct: 2  RILMVGLDAAGKTTILYKLKLGEIVTTIPTIG--FNVE--TVEYKNISFTVWDVGGQDKI 57

Query: 76 RTLTSSYYRGAQGIILVYDVTRRE 99
          R L   Y++  QG+I V D   RE
Sbjct: 58 RPLWRHYFQNTQGLIFVVDSNDRE 81

The Arf1-Arf5-like subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents and other lower eukaryotes, lack Arf2. Human Arf3 shares 96% sequence identity with Arf1 and is believed to generally function interchangeably with Arf1. Human Arf4 in the activated (GTP-bound) state has been shown to interact with the cytoplasmic domain of epidermal growth factor receptor (EGFR) and mediate the EGF-dependent activation of phospholipase D2 (PLD2), leading to activation of the activator protein 1 (AP-1) transcription factor. Arf4 has also been shown to recognize the C-terminal sorting signal of rhodopsin and regulate its incorporation into specialized post-Golgi rhodopsin transport carriers (RTCs). There is some evidence that Arf5 functions at the early-Golgi and the trans-Golgi to affect Golgi-associated alpha-adaptin homology Arf-binding proteins (GGAs). Length = 159

>gnl|CDD|206724 cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl10) GTPases

 Score = 57.7 bits (140), Expect = 9e-11
 Identities = 40/122 (32%), Positives = 60/122 (49%), Gaps = 18/122 (14%)

Query: 17  ILLIGDSGVGKSSLLVSFISSS--VDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER 74
           I L+G    GK++L V+ I+S    +D  PT+G  F ++ +T     +K  +WD  GQ R
Sbjct: 2   ITLVGLQNSGKTTL-VNVIASGQFSEDTIPTVG--FNMRKVTKGNVTIK--VWDLGGQPR 56

Query: 75  FRTLTSSYYRGAQGIILVYDVTRRETF----TNLSDVWAKEVDLYSTNQDCVKMLV-GNK 129
           FR++   Y RG   I+ V D   RE        L D+  K       + + + +LV GNK
Sbjct: 57  FRSMWERYCRGVNAIVYVVDAADREKLEVAKNELHDLLEK------PSLEGIPLLVLGNK 110

Query: 130 VD 131
            D
Sbjct: 111 ND 112

Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. Length = 159

>gnl|CDD|173423 PTZ00133, PTZ00133, ADP-ribosylation factor; Provisional

 Score = 57.9 bits (140), Expect = 1e-10
 Identities = 31/84 (36%), Positives = 44/84 (52%), Gaps = 4/84 (4%)

Query: 16 KILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERF 75
          +IL++G    GK+++L       V    PTIG + +    TV  K LK T+WD  GQ++ 
Sbjct: 19 RILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVE----TVEYKNLKFTMWDVGGQDKL 74

Query: 76 RTLTSSYYRGAQGIILVYDVTRRE 99
          R L   YY+   G+I V D   RE
Sbjct: 75 RPLWRHYYQNTNGLIFVVDSNDRE 98

Length = 182

>gnl|CDD|165788 PLN00223, PLN00223, ADP-ribosylation factor; Provisional

 Score = 56.5 bits (136), Expect = 4e-10
 Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 4/91 (4%)

Query: 16  KILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERF 75
           +IL++G    GK+++L       +    PTIG + +    TV  K +  T+WD  GQ++ 
Sbjct: 19  RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE----TVEYKNISFTVWDVGGQDKI 74

Query: 76  RTLTSSYYRGAQGIILVYDVTRRETFTNLSD 106
           R L   Y++  QG+I V D   R+      D
Sbjct: 75  RPLWRHYFQNTQGLIFVVDSNDRDRVVEARD 105

Length = 181

>gnl|CDD|206716 cd04149, Arf6, ADP ribosylation factor 6 (Arf6)

 Score = 55.6 bits (134), Expect = 8e-10
 Identities = 36/124 (29%), Positives = 59/124 (47%), Gaps = 21/124 (16%)

Query: 16  KILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERF 75
           +IL++G    GK+++L            PT+G  F ++  TV  K +K  +WD  GQ++ 
Sbjct: 11  RILMLGLDAAGKTTILYKLKLGQSVTTIPTVG--FNVE--TVTYKNVKFNVWDVGGQDKI 66

Query: 76  RTLTSSYYRGAQGIILVYDVT--------RRETFTNLSDVWAKEVDLYSTNQDCVKMLVG 127
           R L   YY G QG+I V D          R+E    ++D   +E+      +D + ++  
Sbjct: 67  RPLWRHYYTGTQGLIFVVDSADRDRIDEARQELHRIIND---REM------RDALLLVFA 117

Query: 128 NKVD 131
           NK D
Sbjct: 118 NKQD 121

Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed to function at multiple sites on the plasma membrane through interaction with a specific set of GEFs, GAPs, and effectors. Arf6 has been implicated in breast cancer and melanoma cell invasion, and in actin remodelling at the invasion site of Chlamydia infection. Length = 168

>gnl|CDD|206723 cd04158, ARD1, (ADP-ribosylation factor domain protein 1 (ARD1)

 Score = 55.4 bits (133), Expect = 8e-10
 Identities = 40/138 (28%), Positives = 62/138 (44%), Gaps = 13/138 (9%)

Query: 16  KILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERF 75
           +++ +G  G GK+++L            PTIG + +    TV  K LK TIWD  G+ + 
Sbjct: 1   RVVTLGLDGAGKTTILFKLKQDEFMQPIPTIGFNVE----TVEYKNLKFTIWDVGGKHKL 56

Query: 76  RTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAK---EVDLYSTNQDCVKMLVGNKVDR 132
           R L   YY   Q ++ V D + R+  +      AK   E +L    +D + ++  NK D 
Sbjct: 57  RPLWKHYYLNTQAVVFVIDSSHRDRVSEAHSELAKLLTEKEL----RDALLLIFANKQDV 112

Query: 133 DSERVVSREEGIALAKEH 150
                +S EE   L   H
Sbjct: 113 AG--ALSVEEMTELLSLH 128

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membrane. Two Tyr-based motifs in the Arf domain are responsible for Golgi localization, while the GAP domain controls lysosomal localization. Length = 169

>gnl|CDD|133356 cd04156, ARLTS1, Arf-like tumor suppressor gene 1 (ARLTS1 or Arl11)

 Score = 55.1 bits (133), Expect = 9e-10
 Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 3/84 (3%)

Query: 16 KILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERF 75
          ++LL+G    GKS+LL     + +    PT+G  F +++L    K L LT+WD  GQE+ 
Sbjct: 1  QVLLLGLDSAGKSTLLYKLKHAELVTTIPTVG--FNVEMLQ-LEKHLSLTVWDVGGQEKM 57

Query: 76 RTLTSSYYRGAQGIILVYDVTRRE 99
          RT+   Y     G++ V D +   
Sbjct: 58 RTVWKCYLENTDGLVYVVDSSDEA 81

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in high-risk familial breast cancer. Length = 160

>gnl|CDD|206720 cd04154, Arl2, Arf-like 2 (Arl2) GTPase

 Score = 53.9 bits (130), Expect = 3e-09
 Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 4/85 (4%)

Query: 15 FKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER 74
           +IL++G    GK+++L  F    +  +SPT+G  F IK L   G   KL IWD  GQ+ 
Sbjct: 15 MRILMLGLDNAGKTTILKKFNGEDISTISPTLG--FNIKTLEYNG--YKLNIWDVGGQKS 70

Query: 75 FRTLTSSYYRGAQGIILVYDVTRRE 99
           R+   +Y+     +I V D + R 
Sbjct: 71 LRSYWRNYFESTDALIWVVDSSDRA 95

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis. Length = 173

>gnl|CDD|206718 cd04151, Arl1, ADP ribosylation factor 1 (Arf1)

 Score = 53.6 bits (129), Expect = 3e-09
 Identities = 46/169 (27%), Positives = 73/169 (43%), Gaps = 24/169 (14%)

Query: 16  KILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERF 75
           +IL++G  G GK+++L       V    PTIG + +    TV  K LK  +WD  GQ   
Sbjct: 1   RILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVE----TVTYKNLKFQVWDLGGQTSI 56

Query: 76  RTLTSSYYRGAQGIILVYD--------VTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVG 127
           R     YY     II V D        +++ E    L     +E +L    +D V ++  
Sbjct: 57  RPYWRCYYSNTDAIIYVVDSTDRDRLGISKSELHAML-----EEEEL----KDAVLLVFA 107

Query: 128 NKVDRD---SERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLA 173
           NK D     SE  V+ + G++  K+      + SA   E +++  + L 
Sbjct: 108 NKQDMPGALSEAEVAEKLGLSELKDRTWQIFKTSATKGEGLDEGMDWLV 156

Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability. Length = 158

>gnl|CDD|206721 cd04155, Arl3, Arf-like 3 (Arl3) GTPase

 Score = 52.4 bits (126), Expect = 1e-08
 Identities = 46/163 (28%), Positives = 72/163 (44%), Gaps = 24/163 (14%)

Query: 16  KILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERF 75
           +ILL+G    GK+++L    S  +  ++PT G  F IK +   G +L +  WD  GQ + 
Sbjct: 17  RILLLGLDNAGKTTILKQLASEDISHITPTQG--FNIKNVQADGFKLNV--WDIGGQRKI 72

Query: 76  RTLTSSYYRGAQGIILVYDVTRRETF----TNLSDVWAKEVDLYSTNQDCVKMLV-GNKV 130
           R    +Y+     +I V D   R+ F      L ++  +E  L       V +LV  NK 
Sbjct: 73  RPYWRNYFENTDVLIYVIDSADRKRFEEAGQELVEL-LEEEKL-----AGVPVLVFANKQ 126

Query: 131 D----RDSERVVSREEGIALAKEHGSLF--LECSAKTRENVEQ 167
           D      +E V    E + L       +    CSAKT E +++
Sbjct: 127 DLLTAAPAEEVA---EALNLHDIRDRSWHIQACSAKTGEGLQE 166

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation. Length = 174

>gnl|CDD|206719 cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7) GTPases

 Score = 51.7 bits (124), Expect = 2e-08
 Identities = 34/119 (28%), Positives = 54/119 (45%), Gaps = 2/119 (1%)

Query: 14  SFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDF-KIKLLTVAGKRLKLTIWDTAGQ 72
           S  I+++G    GK+++L     +   +  PT G +  KIK+     K +    WD  GQ
Sbjct: 3   SLHIVMLGLDSAGKTTVLYRLKFNEFVNTVPTKGFNTEKIKVSLGNAKGVTFHFWDVGGQ 62

Query: 73  ERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVD 131
           E+ R L  SY R   GI+ V D    E     +     ++  +S NQ    +++ NK D
Sbjct: 63  EKLRPLWKSYTRCTDGIVFVVDSVDVERMEE-AKTELHKITKFSENQGVPVLVLANKQD 120

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 183

>gnl|CDD|225138 COG2229, COG2229, Predicted GTPase [General function prediction only]

 Score = 51.7 bits (124), Expect = 2e-08
 Identities = 44/183 (24%), Positives = 78/183 (42%), Gaps = 19/183 (10%)

Query: 16  KILLIGDSGVGKSSLL--VSFISSSVDDLSPTIGVDFKIKLLTVA--------GKRLKLT 65
           KI++IG  G GK++ +  +S     + +   +       +  TVA         +   + 
Sbjct: 12  KIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVH 71

Query: 66  IWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKML 125
           ++ T GQERF+ +     RGA G I++ D +R  TF       A+E+  + T+++ + ++
Sbjct: 72  LFGTPGQERFKFMWEILSRGAVGAIVLVDSSRPITFH------AEEIIDFLTSRNPIPVV 125

Query: 126 VG-NKVDRDSERVVSREEGIALAKEHGSLF-LECSAKTRENVEQCFEQLALKIMEVPSLL 183
           V  NK D         +   AL  E  S+  +E  A   E      + L LK +   +  
Sbjct: 126 VAINKQDLFDALPPE-KIREALKLELLSVPVIEIDATEGEGARDQLDVLLLKDLLGSANE 184

Query: 184 EEG 186
           E  
Sbjct: 185 EAS 187

Length = 187

>gnl|CDD|206725 cd04160, Arfrp1, Arf-related protein 1 (Arfrp1)

 Score = 50.8 bits (122), Expect = 3e-08
 Identities = 46/171 (26%), Positives = 73/171 (42%), Gaps = 22/171 (12%)

Query: 17  ILLIGDSGVGKSSLL--------VSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWD 68
           +L++G    GK++ L         ++   +   ++PT+G++  I  + V   RL    WD
Sbjct: 2   VLILGLDNAGKTTFLEQTKTKFSKNYKGLNPSKITPTVGLN--IGTIEVGKARLMF--WD 57

Query: 69  TAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGN 128
             GQE  R+L   YY  + G+I V D T RE F      + ++V      +    +++ N
Sbjct: 58  LGGQEELRSLWDKYYAESHGVIYVIDSTDRERFNESKSAF-EKVINNEALEGVPLLVLAN 116

Query: 129 KVDRDSERVVSREE-------GIALAKEHGSLFLECSAKTRENVEQCFEQL 172
           K  +D    +S  E        IAL      L    SA   E VE+  E L
Sbjct: 117 K--QDLPDALSVAEIKEVFDDCIALIGRRDCLVQPVSALEGEGVEEGIEWL 165

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development. Length = 168

>gnl|CDD|206741 cd09914, RocCOR, Ras of complex proteins (Roc) C-terminal of Roc (COR) domain family

 Score = 48.1 bits (115), Expect = 3e-07
 Identities = 33/119 (27%), Positives = 60/119 (50%), Gaps = 7/119 (5%)

Query: 16  KILLIGDSGVGKSSLLVSFISSSVD-DLSPTIGVDF-KIKLLTVAGKRLKLTIWDTAGQE 73
           K++L+G  GVGK+SL    I    D D S T G++    K+     K+++L +WD  GQE
Sbjct: 3   KLMLVGQGGVGKTSLCKQLIGEKFDGDESSTHGINVQDWKIPAPERKKIRLNVWDFGGQE 62

Query: 74  RFRTLTSSYYRGAQGI-ILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVD 131
            +   T  ++  ++ + +LV+D+ R     +    W +++  +        +LVG  +D
Sbjct: 63  IYHA-THQFFLTSRSLYLLVFDL-RTGDEVSRVPYWLRQIKAFGGVSPV--ILVGTHID 117

RocCOR (or Roco) protein family is characterized by a superdomain containing a Ras-like GTPase domain, called Roc (Ras of complex proteins), and a characteristic second domain called COR (C-terminal of Roc). A kinase domain and diverse regulatory domains are also often found in Roco proteins. Their functions are diverse; in Dictyostelium discoideum, which encodes 11 Roco proteins, they are involved in cell division, chemotaxis and development, while in human, where 4 Roco proteins (LRRK1, LRRK2, DAPK1, and MFHAS1) are encoded, these proteins are involved in epilepsy and cancer. Mutations in LRRK2 (leucine-rich repeat kinase 2) are known to cause familial Parkinson's disease. Length = 161

>gnl|CDD|133342 cd04142, RRP22, Ras-related protein on chromosome 22 (RRP22) family

 Score = 48.3 bits (115), Expect = 4e-07
 Identities = 45/174 (25%), Positives = 83/174 (47%), Gaps = 21/174 (12%)

Query: 15  FKILLIGDSGVGKSSLLVSFISSSVDDLS-PTIGVDFKIKLLTVAGKRLKLTIWD----- 68
            ++ ++G  GVGK++++  F++    +   PT         + ++G+   L I D     
Sbjct: 1   VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQ 60

Query: 69  ----TAGQE----RFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDL-YSTNQ 119
               TAGQE    RFR L     R ++  ILVYD+   ++F  +  +  + ++   + N+
Sbjct: 61  RYPGTAGQEWMDPRFRGL-----RNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNK 115

Query: 120 DCVKMLVGNKVDRDSERVVSREEGIALAKEHGSL-FLECSAKTRENVEQCFEQL 172
           +   ++VGNK D+   R   R     L ++     +LECSAK   ++   F++L
Sbjct: 116 EPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYNWHILLLFKEL 169

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated. Length = 198

>gnl|CDD|206645 cd00879, Sar1, Sar1 is an essential component of COPII vesicle coats

 Score = 45.7 bits (109), Expect = 3e-06
 Identities = 35/129 (27%), Positives = 57/129 (44%), Gaps = 11/129 (8%)

Query: 16  KILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERF 75
           KI+ +G    GK++LL       +    PT+      + LT+    +K T +D  G E+ 
Sbjct: 21  KIVFLGLDNAGKTTLLHMLKDDRLAQHVPTLH--PTSEELTIGN--VKFTTFDLGGHEQA 76

Query: 76  RTLTSSYYRGAQGIILVYDVTRRETFTNL-SDVWAKEVDLYSTNQDCVKMLV-GNKVDRD 133
           R +   Y+    GI+ + D    E F     ++ +   D    N   V +L+ GNK+D+ 
Sbjct: 77  RRVWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLNDEELAN---VPILILGNKIDK- 132

Query: 134 SERVVSREE 142
               VS EE
Sbjct: 133 -PGAVSEEE 140

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation. Length = 191

>gnl|CDD|133362 cd04162, Arl9_Arfrp2_like, Arf-like 9 (Arl9)/Arfrp2-like GTPase

 Score = 44.7 bits (106), Expect = 4e-06
 Identities = 45/173 (26%), Positives = 69/173 (39%), Gaps = 24/173 (13%)

Query: 17  ILLIGDSGVGKSSLLVSFIS-SSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERF 75
           IL++G  G GK+SLL S  S  S++ + PT G  F    +      ++L   +  G +  
Sbjct: 2   ILVLGLDGAGKTSLLHSLSSERSLESVVPTTG--FNSVAIPTQDAIMELL--EIGGSQNL 57

Query: 76  RTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQ-DCVK--MLVGNKVDR 132
           R     Y  G+QG+I V D    E         A++ +L+   Q       +++ NK D 
Sbjct: 58  RKYWKRYLSGSQGLIFVVDSADSERLP-----LARQ-ELHQLLQHPPDLPLVVLANKQDL 111

Query: 133 DSERVVSR------EEGIALAKE----HGSLFLECSAKTRENVEQCFEQLALK 175
            + R V         E IA  +       SL  + S    E V+    QL   
Sbjct: 112 PAARSVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVKDLLSQLINL 164

Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date. Length = 164

>gnl|CDD|206722 cd04157, Arl6, Arf-like 6 (Arl6) GTPase

 Score = 44.3 bits (105), Expect = 6e-06
 Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 6/80 (7%)

Query: 17 ILLIGDSGVGKSSLLVSFISSSV--DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER 74
          IL++G    GK++++     S+    ++ PT+G  F ++        L  T +D +GQ +
Sbjct: 2  ILVLGLDNSGKTTIINQLKPSNAQSQNIVPTVG--FNVESFKKGN--LSFTAFDMSGQGK 57

Query: 75 FRTLTSSYYRGAQGIILVYD 94
          +R L   YY+  QGII V D
Sbjct: 58 YRGLWEHYYKNIQGIIFVID 77

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 162

>gnl|CDD|206646 cd00880, Era_like, E

 Score = 42.6 bits (101), Expect = 3e-05
 Identities = 36/165 (21%), Positives = 57/165 (34%), Gaps = 18/165 (10%)

Query: 19  LIGDSGVGKSSLLVSFISSSVDDLSPTIGV--DFKIKLLTVAGKRLKLTIWDTAG----- 71
           + G   VGKSSLL + +  +V  +SP  G   D   K   +      + + DT G     
Sbjct: 2   IFGRPNVGKSSLLNALLGQNVGIVSPIPGTTRDPVRKEWELLPLG-PVVLIDTPGLDEEG 60

Query: 72  -QERFRT-LTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNK 129
              R R          A  ++LV D           +  AK   L    +  +  LV NK
Sbjct: 61  GLGRERVEEARQVADRADLVLLVVDSDLTPV-----EEEAKLGLLRERGKPVL--LVLNK 113

Query: 130 VD-RDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLA 173
           +D               L        +  SA   E +++  +++A
Sbjct: 114 IDLVPESEEEELLRERKLELLPDLPVIAVSALPGEGIDELRKKIA 158

coli Ras-like protein (Era)-like GTPase. The Era (E. coli Ras-like protein)-like family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngB), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Length = 161

>gnl|CDD|223561 COG0486, ThdF, Predicted GTPase [General function prediction only]

 Score = 42.9 bits (102), Expect = 5e-05
 Identities = 42/173 (24%), Positives = 69/173 (39%), Gaps = 44/173 (25%)

Query: 15  FKILLIGDSGVGKSSLL----------VSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKL 64
            K+++IG   VGKSSLL          V+ I+ +  D    I  D  +      G  ++L
Sbjct: 218 LKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRD---VIEEDINLN-----GIPVRL 269

Query: 65  TIWDTAGQ-------ERF---RTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDL 114
              DTAG        ER    R   +     A  ++ V D ++     +L       ++L
Sbjct: 270 V--DTAGIRETDDVVERIGIERAKKAI--EEADLVLFVLDASQPLDKEDL-----ALIEL 320

Query: 115 YSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQ 167
               +  +  +V NK D     +VS+ E  +    +G   +  SAKT E ++ 
Sbjct: 321 LPKKKPII--VVLNKAD-----LVSKIELESEKLANGDAIISISAKTGEGLDA 366

Length = 454

>gnl|CDD|206744 cd11384, RagA_like, Rag GTPase, subfamily of Ras-related GTPases, includes Ras-related GTP-binding proteins A and B

 Score = 41.0 bits (97), Expect = 2e-04
 Identities = 34/123 (27%), Positives = 57/123 (46%), Gaps = 25/123 (20%)

Query: 16  KILLIGDSGVGKSS----LLVSFISSSVDDLSPTIGVDF-KIKLLTVAGKRLKLTIWDTA 70
           K+LL+G SG GK+S    +  ++++     L  TI V+   ++ L      L L +WD  
Sbjct: 1   KVLLMGKSGSGKTSMRSIIFANYLARDTRRLGATIDVEHSHVRFL----GNLVLNLWDCG 56

Query: 71  GQERF--RTLTS---SYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKML 125
           GQ+ F     TS     +R  + +I V+DV  RE          K++  +   + C++ L
Sbjct: 57  GQDAFMENYFTSQRDHIFRNVEVLIYVFDVESRE--------LEKDLTYF---RSCLEAL 105

Query: 126 VGN 128
             N
Sbjct: 106 RQN 108

RagA and RagB are closely related Rag GTPases (ras-related GTP-binding protein A and B) that constitute a unique subgroup of the Ras superfamily, and are functional homologs of Saccharomyces cerevisiae Gtr1. These domains function by forming heterodimers with RagC or RagD, and similarly, Gtr1 dimerizes with Gtr2, through the carboxy-terminal segments. They play an essential role in regulating amino acid-induced target of rapamycin complex 1 (TORC1) kinase signaling, exocytic cargo sorting at endosomes, and epigenetic control of gene expression. In response to amino acids, the Rag GTPases guide the TORC1 complex to activate the platform containing Rheb proto-oncogene by driving the relocalization of mTORC1 from discrete locations in the cytoplasm to a late endosomal and/or lysosomal compartment that is Rheb-enriched and contains Rab-7. Length = 286

>gnl|CDD|206679 cd01892, Miro2, Mitochondrial Rho family 2 (Miro2), C-terminal

 Score = 39.9 bits (94), Expect = 2e-04
 Identities = 33/121 (27%), Positives = 53/121 (43%), Gaps = 6/121 (4%)

Query: 15  FKILLIGDSGVGKSSLLVSFI--SSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQ 72
           F   ++G  G GKS+LL +F+  S S +  SPTI   + +  + V G+   L + +    
Sbjct: 5   FLCFVLGAKGSGKSALLQAFLGRSFSQNAYSPTIKPRYAVNTVEVPGQEKYLILREVGED 64

Query: 73  ERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDR 132
           E    L  +         LVYD +   +F+  ++V+ K   L      C+   V  K D 
Sbjct: 65  EEAILLNDAELAACDVACLVYDSSDPNSFSYCAEVYKKYFMLGEI--PCL--FVAAKADL 120

Query: 133 D 133
           D
Sbjct: 121 D 121

Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. Length = 180

>gnl|CDD|133303 cd04103, Centaurin_gamma, Centaurin gamma (CENTG) GTPase

 Score = 37.5 bits (87), Expect = 0.001
 Identities = 39/165 (23%), Positives = 68/165 (41%), Gaps = 12/165 (7%)

Query: 16  KILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERF 75
           K+ ++G+   GKS+L+  +++ S   L    G  FK K + V G+   L I D  G    
Sbjct: 2   KLGIVGNLRSGKSALVHRYLTGSYVQLESPEGGRFK-KEVLVDGQSHLLLIRDEGGA--- 57

Query: 76  RTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSE 135
               + +      +I V+ +    +F  +      ++  Y    +   +LVG + D  S 
Sbjct: 58  --PDAQFAGWVDAVIFVFSLEDEASFQTVYR-LYHQLSSYRNISEIPLILVGTQ-DAISA 113

Query: 136 ---RVVSREEGIALAKE-HGSLFLECSAKTRENVEQCFEQLALKI 176
              RV+       L  +     + E  A    NVE+ F++ A KI
Sbjct: 114 SNPRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQEAAQKI 158

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues. GGAP has been shown to have high GTPase activity due to a direct intramolecular interaction between the N-terminal GTPase domain and the C-terminal ArfGAP domain. In human tissue, AGAP mRNA was detected in skeletal muscle, kidney, placenta, brain, heart, colon, and lung. Reduced expression levels were also observed in the spleen, liver, and small intestine. Length = 158

>gnl|CDD|206649 cd01850, CDC_Septin, CDC/Septin GTPase family

 Score = 37.9 bits (89), Expect = 0.002
 Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 10/67 (14%)

Query: 15 FKILLIGDSGVGKS----SLLVSFISSSVDDLSPTIGVDFKIKLLTVA------GKRLKL 64
          F I+++G+SG+GKS    +L  + +  S    +P   +   +++          G +LKL
Sbjct: 5  FNIMVVGESGLGKSTFINTLFGTKLYPSKYPPAPGEHITKTVEIKISKAELEENGVKLKL 64

Query: 65 TIWDTAG 71
          T+ DT G
Sbjct: 65 TVIDTPG 71

Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities. Length = 275

>gnl|CDD|133361 cd04161, Arl2l1_Arl13_like, Arl2-like protein 1 (Arl2l1) and Arl13

 Score = 37.4 bits (87), Expect = 0.002
 Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 4/78 (5%)

Query: 17 ILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFR 76
          +L +G    GK++L+ +        ++PT+G     KL      + ++ I+D  G   FR
Sbjct: 2  LLTVGLDNAGKTTLVSALQGEIPKKVAPTVGFT-PTKLRL---DKYEVCIFDLGGGANFR 57

Query: 77 TLTSSYYRGAQGIILVYD 94
           +  +YY  A G++ V D
Sbjct: 58 GIWVNYYAEAHGLVFVVD 75

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene. Length = 167

>gnl|CDD|218203 pfam04670, Gtr1_RagA, Gtr1/RagA G protein conserved region

 Score = 37.6 bits (88), Expect = 0.002
 Identities = 30/94 (31%), Positives = 41/94 (43%), Gaps = 14/94 (14%)

Query: 16 KILLIGDSGVGKSSLLVSFISS-----SVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTA 70
          K+LL+G  G GKSS + S I S         L  TI V+     +   G  L L +WD  
Sbjct: 1  KVLLMGLRGSGKSS-MRSIIFSNYSPRDTLRLGATIDVE--QSHVRFLGN-LTLNLWDCP 56

Query: 71 GQERFRTLTSSY-----YRGAQGIILVYDVTRRE 99
          GQ+ F     +      +     +I V+DV  RE
Sbjct: 57 GQDDFMENYLTRQKEHIFSNVGVLIYVFDVESRE 90

GTR1 was first identified in S. cerevisiae as a suppressor of a mutation in RCC1. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1. Included in this family is the human Rag C, a novel protein that has been shown to interact with RagA/B. Length = 230

>gnl|CDD|215653 pfam00009, GTP_EFTU, Elongation factor Tu GTP binding domain

 Score = 36.7 bits (86), Expect = 0.004
 Identities = 37/150 (24%), Positives = 54/150 (36%), Gaps = 38/150 (25%)

Query: 45  TIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDV-------TR 97
           TI    KI  ++   K+  + I DT G   F          A G ILV D        TR
Sbjct: 53  TI----KIAAVSFETKKRLINIIDTPGHVDFTKEMIRGASQADGAILVVDAVEGVMPQTR 108

Query: 98  RETFTNLSDVW--AKEVDLYSTNQDCVKMLVG-NKVDRDSE---RVVSREEGIALAKEHG 151
                        AK +         V ++V  NK+DR  +     V  E    L +++G
Sbjct: 109 E--------HLLLAKTLG--------VPIIVFINKIDRVDDAELEEVVEEISRELLEKYG 152

Query: 152 -----SLFLECSAKTRENVEQCFEQLALKI 176
                   +  SA T E +++  E L L +
Sbjct: 153 FGGETVPVVPGSALTGEGIDELLEALDLYL 182

This domain contains a P-loop motif, also found in several other families such as pfam00071, pfam00025 and pfam00063. Elongation factor Tu consists of three structural domains, this plus two C-terminal beta barrel domains. Length = 184

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	211
KOG0080	209	consensus GTPase Rab18, small G protein superfamil	100.0
KOG0084	205	consensus GTPase Rab1/YPT1, small G protein superf	100.0
KOG0092	200	consensus GTPase Rab5/YPT51 and related small G pr	100.0
KOG0094	221	consensus GTPase Rab6/YPT6/Ryh1, small G protein s	100.0
PLN03118	211	Rab family protein; Provisional	100.0
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	100.0
KOG0078	207	consensus GTP-binding protein SEC4, small G protei	100.0
KOG0087	222	consensus GTPase Rab11/YPT3, small G protein super	100.0
cd04120	202	Rab12 Rab12 subfamily. Rab12 was first identified	100.0
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	100.0
KOG0394	210	consensus Ras-related GTPase [General function pre	100.0
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	100.0
PLN03110	216	Rab GTPase; Provisional	100.0
KOG0098	216	consensus GTPase Rab2, small G protein superfamily	100.0
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	100.0
cd04126	220	Rab20 Rab20 subfamily. Rab20 is one of several Rab	100.0
cd04144	190	Ras2 Ras2 subfamily. The Ras2 subfamily, found exc	100.0
KOG0093	193	consensus GTPase Rab3, small G protein superfamily	100.0
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	100.0
PTZ00369	189	Ras-like protein; Provisional	100.0
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	100.0
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	100.0
cd04174	232	Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb	100.0
cd04172	182	Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE	100.0
KOG0079	198	consensus GTP-binding protein H-ray, small G prote	100.0
cd04133	176	Rop_like Rop subfamily. The Rop (Rho-related prote	100.0
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	100.0
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	100.0
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	100.0
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	100.0
KOG0088	218	consensus GTPase Rab21, small G protein superfamil	100.0
cd01875	191	RhoG RhoG subfamily. RhoG is a GTPase with high se	100.0
cd04131	178	Rnd Rnd subfamily. The Rnd subfamily contains Rnd1	100.0
cd04118	193	Rab24 Rab24 subfamily. Rab24 is distinct from othe	100.0
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	100.0
cd04132	187	Rho4_like Rho4-like subfamily. Rho4 is a GTPase th	100.0
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	100.0
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	100.0
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	100.0
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	100.0
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	100.0
PLN03108	210	Rab family protein; Provisional	100.0
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	100.0
cd01874	175	Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas	100.0
cd04173	222	Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb	100.0
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	100.0
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	100.0
KOG0091	213	consensus GTPase Rab39, small G protein superfamil	100.0
cd04128	182	Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi	100.0
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	100.0
cd04134	189	Rho3 Rho3 subfamily. Rho3 is a member of the Rho f	100.0
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	100.0
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	100.0
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	100.0
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	100.0
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	100.0
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	100.0
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	100.0
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	100.0
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	100.0
KOG0086	214	consensus GTPase Rab4, small G protein superfamily	100.0
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	100.0
cd01871	174	Rac1_like Rac1-like subfamily. The Rac1-like subfa	100.0
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	100.0
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	100.0
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	100.0
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	100.0
KOG0081	219	consensus GTPase Rab27, small G protein superfamil	100.0
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	100.0
smart00174	174	RHO Rho (Ras homology) subfamily of Ras-like small	100.0
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	100.0
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	100.0
cd04142	198	RRP22 RRP22 subfamily. RRP22 (Ras-related protein	100.0
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	100.0
cd01873	195	RhoBTB RhoBTB subfamily. Members of the RhoBTB sub	100.0
smart00176	200	RAN Ran (Ras-related nuclear proteins) /TC4 subfam	100.0
KOG0095	213	consensus GTPase Rab30, small G protein superfamil	100.0
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	100.0
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	100.0
cd04148	221	RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki	100.0
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	100.0
cd04130	173	Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive	100.0
cd04103	158	Centaurin_gamma Centaurin gamma. The centaurins (a	100.0
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	100.0
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	99.98
cd04143	247	Rhes_like Rhes_like subfamily. This subfamily incl	99.98
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	99.98
cd01892	169	Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr	99.98
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	99.98
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	99.98
KOG0083	192	consensus GTPase Rab26/Rab37, small G protein supe	99.97
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	99.97
cd04152	183	Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i	99.97
cd04147	198	Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v	99.97
smart00177	175	ARF ARF-like small GTPases; ARF, ADP-ribosylation	99.97
PLN00223	181	ADP-ribosylation factor; Provisional	99.97
cd04158	169	ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor	99.97
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	99.97
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	99.97
cd04150	159	Arf1_5_like Arf1-Arf5-like subfamily. This subfami	99.97
KOG0097	215	consensus GTPase Rab14, small G protein superfamil	99.97
PTZ00133	182	ADP-ribosylation factor; Provisional	99.97
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	99.97
cd04129	187	Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that	99.97
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	99.97
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	99.97
KOG0395	196	consensus Ras-related GTPase [General function pre	99.97
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	99.97
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	99.97
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	99.96
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	99.96
KOG0393	198	consensus Ras-related small GTPase, Rho type [Gene	99.96
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	99.96
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	99.96
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	99.96
KOG0073	185	consensus GTP-binding ADP-ribosylation factor-like	99.96
cd04102	202	RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove	99.96
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	99.96
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	99.96
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	99.96
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	99.96
smart00178	184	SAR Sar1p-like members of the Ras-family of small	99.96
PTZ00099	176	rab6; Provisional	99.95
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	99.95
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	99.94
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	99.94
KOG0070	181	consensus GTP-binding ADP-ribosylation factor Arf1	99.94
PLN00023	334	GTP-binding protein; Provisional	99.94
KOG4252	246	consensus GTP-binding protein [Signal transduction	99.94
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	99.94
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	99.94
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	99.94
PRK12299	335	obgE GTPase CgtA; Reviewed	99.94
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	99.93
PRK15494	339	era GTPase Era; Provisional	99.93
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	99.93
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	99.93
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	99.93
COG1100	219	GTPase SAR1 and related small G proteins [General	99.92
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	99.92
KOG0071	180	consensus GTP-binding ADP-ribosylation factor Arf6	99.92
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	99.92
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	99.92
PRK04213	201	GTP-binding protein; Provisional	99.92
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	99.92
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	99.91
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	99.91
KOG0075	186	consensus GTP-binding ADP-ribosylation factor-like	99.91
PRK03003	472	GTP-binding protein Der; Reviewed	99.91
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	99.91
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	99.91
TIGR02729	329	Obg_CgtA Obg family GTPase CgtA. This model descri	99.91
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	99.91
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	99.91
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	99.9
PRK03003	472	GTP-binding protein Der; Reviewed	99.9
cd01881	176	Obg_like The Obg-like subfamily consists of five w	99.9
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	99.9
PRK00089	292	era GTPase Era; Reviewed	99.9
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.9
PRK12297	424	obgE GTPase CgtA; Reviewed	99.9
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	99.9
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	99.9
cd00881	189	GTP_translation_factor GTP translation factor fami	99.89
KOG1673	205	consensus Ras GTPases [General function prediction	99.89
PRK12296	500	obgE GTPase CgtA; Reviewed	99.89
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	99.89
KOG3883	198	consensus Ras family small GTPase [Signal transduc	99.89
KOG0074	185	consensus GTP-binding ADP-ribosylation factor-like	99.89
PRK15467	158	ethanolamine utilization protein EutP; Provisional	99.88
COG1159	298	Era GTPase [General function prediction only]	99.88
TIGR01393	595	lepA GTP-binding protein LepA. LepA (GUF1 in Sacca	99.88
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	99.88
PRK12298	390	obgE GTPase CgtA; Reviewed	99.88
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	99.88
cd04105	203	SR_beta Signal recognition particle receptor, beta	99.88
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	99.88
PRK11058	426	GTPase HflX; Provisional	99.88
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.88
KOG0072	182	consensus GTP-binding ADP-ribosylation factor-like	99.88
TIGR00487	587	IF-2 translation initiation factor IF-2. This mode	99.87
PRK00093	435	GTP-binding protein Der; Reviewed	99.87
PRK00093	435	GTP-binding protein Der; Reviewed	99.87
CHL00189	742	infB translation initiation factor 2; Provisional	99.87
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	99.87
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.86
PRK05306	787	infB translation initiation factor IF-2; Validated	99.86
TIGR00475	581	selB selenocysteine-specific elongation factor Sel	99.86
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	99.86
PRK09554	772	feoB ferrous iron transport protein B; Reviewed	99.86
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.86
COG1160	444	Predicted GTPases [General function prediction onl	99.85
TIGR00437	591	feoB ferrous iron transporter FeoB. FeoB (773 amin	99.85
COG1160	444	Predicted GTPases [General function prediction onl	99.85
COG0486	454	ThdF Predicted GTPase [General function prediction	99.85
PRK12317	425	elongation factor 1-alpha; Reviewed	99.85
PRK05433	600	GTP-binding protein LepA; Provisional	99.84
KOG1423	379	consensus Ras-like GTPase ERA [Cell cycle control,	99.83
KOG0076	197	consensus GTP-binding ADP-ribosylation factor-like	99.83
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	99.83
TIGR00483	426	EF-1_alpha translation elongation factor EF-1 alph	99.83
COG2229	187	Predicted GTPase [General function prediction only	99.83
cd01896	233	DRG The developmentally regulated GTP-binding prot	99.82
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	99.82
TIGR01394	594	TypA_BipA GTP-binding protein TypA/BipA. This bact	99.82
PRK10218	607	GTP-binding protein; Provisional	99.81
TIGR03680	406	eif2g_arch translation initiation factor 2 subunit	99.81
TIGR00491	590	aIF-2 translation initiation factor aIF-2/yIF-2. T	99.81
cd04168	237	TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T	99.81
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	99.81
KOG0096	216	consensus GTPase Ran/TC4/GSP1 (nuclear protein tra	99.8
PRK04000	411	translation initiation factor IF-2 subunit gamma;	99.8
PRK10512	614	selenocysteinyl-tRNA-specific translation factor;	99.8
COG0218	200	Predicted GTPase [General function prediction only	99.8
KOG4423	229	consensus GTP-binding protein-like, RAS superfamil	99.8
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	99.79
PRK04004	586	translation initiation factor IF-2; Validated	99.79
cd01883	219	EF1_alpha Eukaryotic elongation factor 1 (EF1) alp	99.79
PRK12736	394	elongation factor Tu; Reviewed	99.79
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	99.78
COG0370	653	FeoB Fe2+ transport system protein B [Inorganic io	99.78
cd04167	213	Snu114p Snu114p subfamily. Snu114p is one of sever	99.77
TIGR00485	394	EF-Tu translation elongation factor TU. This align	99.77
PRK12735	396	elongation factor Tu; Reviewed	99.76
cd04165	224	GTPBP1_like GTPBP1-like. Mammalian GTP binding pro	99.76
CHL00071	409	tufA elongation factor Tu	99.75
KOG1489	366	consensus Predicted GTP-binding protein (ODN super	99.75
PF04670	232	Gtr1_RagA: Gtr1/RagA G protein conserved region; I	99.75
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	99.74
COG2262	411	HflX GTPases [General function prediction only]	99.74
PLN03126	478	Elongation factor Tu; Provisional	99.72
KOG0077	193	consensus Vesicle coat complex COPII, GTPase subun	99.72
cd04169	267	RF3 RF3 subfamily. Peptide chain release factor 3	99.72
PRK05124	474	cysN sulfate adenylyltransferase subunit 1; Provis	99.72
COG0532	509	InfB Translation initiation factor 2 (IF-2; GTPase	99.72
COG1084	346	Predicted GTPase [General function prediction only	99.71
PRK00049	396	elongation factor Tu; Reviewed	99.71
PLN00043	447	elongation factor 1-alpha; Provisional	99.71
TIGR02034	406	CysN sulfate adenylyltransferase, large subunit. H	99.71
cd01886	270	EF-G Elongation factor G (EF-G) subfamily. Translo	99.71
PLN03127	447	Elongation factor Tu; Provisional	99.71
PRK00741	526	prfC peptide chain release factor 3; Provisional	99.7
cd01885	222	EF2 EF2 (for archaea and eukarya). Translocation r	99.7
cd01852	196	AIG1 AIG1 (avrRpt2-induced gene 1). This represent	99.7
PTZ00141	446	elongation factor 1- alpha; Provisional	99.7
KOG1145	683	consensus Mitochondrial translation initiation fac	99.7
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	99.7
KOG1191	531	consensus Mitochondrial GTPase [Translation, ribos	99.7
COG0536	369	Obg Predicted GTPase [General function prediction	99.69
cd01850	276	CDC_Septin CDC/Septin. Septins are a conserved fam	99.69
cd04170	268	EF-G_bact Elongation factor G (EF-G) subfamily. Tr	99.68
cd01899	318	Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg	99.67
TIGR00503	527	prfC peptide chain release factor 3. This translat	99.67
PRK13351	687	elongation factor G; Reviewed	99.67
PF09439	181	SRPRB: Signal recognition particle receptor beta s	99.66
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	99.66
PTZ00327	460	eukaryotic translation initiation factor 2 gamma s	99.64
PRK12739	691	elongation factor G; Reviewed	99.64
COG5256	428	TEF1 Translation elongation factor EF-1alpha (GTPa	99.63
COG1163	365	DRG Predicted GTPase [General function prediction	99.62
COG3596	296	Predicted GTPase [General function prediction only	99.61
KOG0462	650	consensus Elongation factor-type GTP-binding prote	99.61
PRK09602	396	translation-associated GTPase; Reviewed	99.61
TIGR00484	689	EF-G translation elongation factor EF-G. After pep	99.61
KOG0090	238	consensus Signal recognition particle receptor, be	99.57
PRK00007	693	elongation factor G; Reviewed	99.57
PRK09866	741	hypothetical protein; Provisional	99.57
PF04548	212	AIG1: AIG1 family; InterPro: IPR006703 This entry	99.55
TIGR00991	313	3a0901s02IAP34 GTP-binding protein (Chloroplast En	99.55
COG4917	148	EutP Ethanolamine utilization protein [Amino acid	99.54
cd01853	249	Toc34_like Toc34-like (Translocon at the Outer-env	99.54
PRK12740	668	elongation factor G; Reviewed	99.53
cd00066	317	G-alpha G protein alpha subunit. The alpha subunit	99.53
PRK13768	253	GTPase; Provisional	99.51
PF05783	472	DLIC: Dynein light intermediate chain (DLIC); Inte	99.5
TIGR00101	199	ureG urease accessory protein UreG. This model rep	99.49
COG0481	603	LepA Membrane GTPase LepA [Cell envelope biogenesi	99.49
KOG3905	473	consensus Dynein light intermediate chain [Cell mo	99.48
smart00275	342	G_alpha G protein alpha subunit. Subunit of G prot	99.48
TIGR02836	492	spore_IV_A stage IV sporulation protein A. A compa	99.47
KOG1490	620	consensus GTP-binding protein CRFG/NOG1 (ODN super	99.47
PRK14845	1049	translation initiation factor IF-2; Provisional	99.47
TIGR00490	720	aEF-2 translation elongation factor aEF-2. This mo	99.46
PTZ00258	390	GTP-binding protein; Provisional	99.46
KOG1532	366	consensus GTPase XAB1, interacts with DNA repair p	99.45
PF05049	376	IIGP: Interferon-inducible GTPase (IIGP); InterPro	99.44
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	99.44
KOG0458	603	consensus Elongation factor 1 alpha [Translation,	99.43
COG2895	431	CysN GTPases - Sulfate adenylate transferase subun	99.43
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	99.43
cd01882	225	BMS1 Bms1. Bms1 is an essential, evolutionarily co	99.41
COG1217	603	TypA Predicted membrane GTPase involved in stress	99.41
PRK09435	332	membrane ATPase/protein kinase; Provisional	99.39
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	99.38
PRK09601	364	GTP-binding protein YchF; Reviewed	99.38
KOG0461	522	consensus Selenocysteine-specific elongation facto	99.37
smart00010	124	small_GTPase Small GTPase of the Ras superfamily;	99.36
PTZ00416	836	elongation factor 2; Provisional	99.36
PLN00116	843	translation elongation factor EF-2 subunit; Provis	99.36
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	99.36
PRK07560	731	elongation factor EF-2; Reviewed	99.33
COG5257	415	GCD11 Translation initiation factor 2, gamma subun	99.3
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	99.29
PF00350	168	Dynamin_N: Dynamin family; InterPro: IPR001401 Mem	99.28
KOG1144	1064	consensus Translation initiation factor 5B (eIF-5B	99.28
KOG3886	295	consensus GTP-binding protein [Signal transduction	99.28
cd01900	274	YchF YchF subfamily. YchF is a member of the Obg f	99.27
COG3276	447	SelB Selenocysteine-specific translation elongatio	99.27
COG0378	202	HypB Ni2+-binding GTPase involved in regulation of	99.22
PF00735	281	Septin: Septin; InterPro: IPR000038 Septins consti	99.21
TIGR00993	763	3a0901s04IAP86 chloroplast protein import componen	99.21
KOG0082	354	consensus G-protein alpha subunit (small G protein	99.2
KOG1954	532	consensus Endocytosis/signaling protein EHD1 [Sign	99.2
COG0480	697	FusA Translation elongation factors (GTPases) [Tra	99.19
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	99.15
COG0012	372	Predicted GTPase, probable translation factor [Tra	99.13
smart00053	240	DYNc Dynamin, GTPase. Large GTPases that mediate v	99.12
KOG1486	364	consensus GTP-binding protein DRG2 (ODN superfamil	99.12
COG0050	394	TufB GTPases - translation elongation factors [Tra	99.12
COG1703	323	ArgK Putative periplasmic protein kinase ArgK and	99.11
KOG3887	347	consensus Predicted small GTPase involved in nucle	99.07
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	99.07
COG4108	528	PrfC Peptide chain release factor RF-3 [Translatio	99.06
KOG0410	410	consensus Predicted GTP binding protein [General f	99.06
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	99.04
PF00503	389	G-alpha: G-protein alpha subunit; InterPro: IPR001	99.03
PRK00098	298	GTPase RsgA; Reviewed	99.01
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	99.0
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	99.0
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	99.0
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	98.99
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	98.99
KOG0468	971	consensus U5 snRNP-specific protein [Translation,	98.99
PRK12289	352	GTPase RsgA; Reviewed	98.98
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	98.95
PRK12288	347	GTPase RsgA; Reviewed	98.93
KOG2655	366	consensus Septin family protein (P-loop GTPase) [C	98.88
COG5019	373	CDC3 Septin family protein [Cell division and chro	98.86
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	98.85
PF09547	492	Spore_IV_A: Stage IV sporulation protein A (spore_	98.83
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	98.83
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	98.83
KOG1143	591	consensus Predicted translation elongation factor	98.83
PRK09563	287	rbgA GTPase YlqF; Reviewed	98.82
COG5258	527	GTPBP1 GTPase [General function prediction only]	98.79
KOG2486	320	consensus Predicted GTPase [General function predi	98.79
KOG1547	336	consensus Septin CDC10 and related P-loop GTPases	98.75
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	98.75
COG1161	322	Predicted GTPases [General function prediction onl	98.74
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	98.72
COG5192	1077	BMS1 GTP-binding protein required for 40S ribosome	98.72
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	98.72
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	98.71
KOG0464	753	consensus Elongation factor G [Translation, riboso	98.71
KOG0460	449	consensus Mitochondrial translation elongation fac	98.7
KOG0447	980	consensus Dynamin-like GTP binding protein [Genera	98.69
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	98.67
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	98.63
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	98.63
cd01851	224	GBP Guanylate-binding protein (GBP), N-terminal do	98.63
KOG0463	641	consensus GTP-binding protein GP-1 [General functi	98.61
KOG1491	391	consensus Predicted GTP-binding protein (ODN super	98.61
PRK14974	336	cell division protein FtsY; Provisional	98.6
KOG0466	466	consensus Translation initiation factor 2, gamma s	98.59
KOG0467	887	consensus Translation elongation factor 2/ribosome	98.58
TIGR00092	368	GTP-binding protein YchF. This predicted GTP-bindi	98.55
PRK10416	318	signal recognition particle-docking protein FtsY;	98.55
PRK12289	352	GTPase RsgA; Reviewed	98.54
PRK12288	347	GTPase RsgA; Reviewed	98.53
PRK09563	287	rbgA GTPase YlqF; Reviewed	98.52
KOG0448	749	consensus Mitofusin 1 GTPase, involved in mitochon	98.51
TIGR00064	272	ftsY signal recognition particle-docking protein F	98.48
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	98.48
KOG0099	379	consensus G protein subunit Galphas, small G prote	98.45
KOG1487	358	consensus GTP-binding protein DRG1 (ODN superfamil	98.45
KOG1424	562	consensus Predicted GTP-binding protein MMR1 [Gene	98.44
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	98.44
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	98.41
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	98.4
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	98.38
PRK13796	365	GTPase YqeH; Provisional	98.38
PRK01889	356	GTPase RsgA; Reviewed	98.38
cd03112	158	CobW_like The function of this protein family is u	98.36
KOG0085	359	consensus G protein subunit Galphaq/Galphay, small	98.35
TIGR03348	1169	VI_IcmF type VI secretion protein IcmF. Members of	98.35
PRK13796	365	GTPase YqeH; Provisional	98.3
KOG0459	501	consensus Polypeptide release factor 3 [Translatio	98.28
KOG0465	721	consensus Mitochondrial elongation factor [Transla	98.28
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	98.26
PRK00098	298	GTPase RsgA; Reviewed	98.24
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	98.24
COG1162	301	Predicted GTPases [General function prediction onl	98.23
KOG2484	435	consensus GTPase [General function prediction only	98.22
COG1162	301	Predicted GTPases [General function prediction onl	98.18
cd03115	173	SRP The signal recognition particle (SRP) mediates	98.18
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	98.13
cd03114	148	ArgK-like The function of this protein family is u	98.11
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	98.08
cd03110	179	Fer4_NifH_child This protein family's function is	98.03
PRK00771	437	signal recognition particle protein Srp54; Provisi	98.03
KOG3859	406	consensus Septins (P-loop GTPases) [Cell cycle con	98.02
KOG4273	418	consensus Uncharacterized conserved protein [Funct	97.99
PRK10867	433	signal recognition particle protein; Provisional	97.99
PRK13695	174	putative NTPase; Provisional	97.98
TIGR00959	428	ffh signal recognition particle protein. This mode	97.97
COG3523	1188	IcmF Type VI protein secretion system component Va	97.95
PRK14721	420	flhF flagellar biosynthesis regulator FlhF; Provis	97.94
PRK12727	559	flagellar biosynthesis regulator FlhF; Provisional	97.86
PF03266	168	NTPase_1: NTPase; InterPro: IPR004948 This entry r	97.86
COG0523	323	Putative GTPases (G3E family) [General function pr	97.86
PRK11537	318	putative GTP-binding protein YjiA; Provisional	97.86
KOG2423	572	consensus Nucleolar GTPase [General function predi	97.86
cd01983	99	Fer4_NifH The Fer4_NifH superfamily contains a var	97.78
KOG2485	335	consensus Conserved ATP/GTP binding protein [Gener	97.76
PRK12726	407	flagellar biosynthesis regulator FlhF; Provisional	97.74
PRK14738	206	gmk guanylate kinase; Provisional	97.68
PRK05703	424	flhF flagellar biosynthesis regulator FlhF; Valida	97.68
PRK12724	432	flagellar biosynthesis regulator FlhF; Provisional	97.68
PF06858	58	NOG1: Nucleolar GTP-binding protein 1 (NOG1); Inte	97.67
PRK14737	186	gmk guanylate kinase; Provisional	97.66
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	97.66
cd02042	104	ParA ParA and ParB of Caulobacter crescentus belon	97.64
cd02038	139	FleN-like FleN is a member of the Fer4_NifH superf	97.63
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	97.6
COG1419	407	FlhF Flagellar GTP-binding protein [Cell motility	97.59
KOG1534	273	consensus Putative transcription factor FET5 [Tran	97.59
PRK08118	167	topology modulation protein; Reviewed	97.59
COG0194	191	Gmk Guanylate kinase [Nucleotide transport and met	97.54
PRK07261	171	topology modulation protein; Provisional	97.53
PF13521	163	AAA_28: AAA domain; PDB: 1LW7_A.	97.51
PRK06995	484	flhF flagellar biosynthesis regulator FlhF; Valida	97.5
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	97.49
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	97.48
COG3640	255	CooC CO dehydrogenase maturation factor [Cell divi	97.45
TIGR02475	341	CobW cobalamin biosynthesis protein CobW. A broade	97.45
PRK14723	767	flhF flagellar biosynthesis regulator FlhF; Provis	97.44
KOG0469	842	consensus Elongation factor 2 [Translation, riboso	97.44
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	97.43
PF11111	176	CENP-M: Centromere protein M (CENP-M); InterPro: I	97.42
COG0541	451	Ffh Signal recognition particle GTPase [Intracellu	97.42
TIGR00150	133	HI0065_YjeE ATPase, YjeE family. Members of this f	97.4
PRK06731	270	flhF flagellar biosynthesis regulator FlhF; Valida	97.37
KOG1533	290	consensus Predicted GTPase [General function predi	97.36
KOG1970	634	consensus Checkpoint RAD17-RFC complex, RAD17/RAD2	97.36
PF03215	519	Rad17: Rad17 cell cycle checkpoint protein	97.35
KOG3929	363	consensus Uncharacterized conserved protein [Funct	97.35
PF13555	62	AAA_29: P-loop containing region of AAA domain	97.34
KOG0780	483	consensus Signal recognition particle, subunit Srp	97.34
PF04665	241	Pox_A32: Poxvirus A32 protein; InterPro: IPR006758	97.33
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	97.3
PF00005	137	ABC_tran: ABC transporter This structure is on hol	97.29
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	97.28
cd03111	106	CpaE_like This protein family consists of proteins	97.28
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	97.27
PRK06217	183	hypothetical protein; Validated	97.24
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	97.22
PF00004	132	AAA: ATPase family associated with various cellula	97.21
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	97.21
PRK14530	215	adenylate kinase; Provisional	97.21
PLN02459	261	probable adenylate kinase	97.21
PF03205	140	MobB: Molybdopterin guanine dinucleotide synthesis	97.19
PF02367	123	UPF0079: Uncharacterised P-loop hydrolase UPF0079;	97.19
PLN02840	421	tRNA dimethylallyltransferase	97.18
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	97.18
PRK03839	180	putative kinase; Provisional	97.18
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	97.18
smart00382	148	AAA ATPases associated with a variety of cellular	97.17
COG0552	340	FtsY Signal recognition particle GTPase [Intracell	97.16
PRK04195	482	replication factor C large subunit; Provisional	97.15
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	97.15
PRK08233	182	hypothetical protein; Provisional	97.14
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	97.14
PRK05480	209	uridine/cytidine kinase; Provisional	97.13
COG4088	261	Predicted nucleotide kinase [Nucleotide transport	97.13
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	97.12
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	97.11
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	97.1
TIGR00235	207	udk uridine kinase. Model contains a number of lon	97.1
PRK13949	169	shikimate kinase; Provisional	97.1
PRK10646	153	ADP-binding protein; Provisional	97.09
PRK01889	356	GTPase RsgA; Reviewed	97.07
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	97.07
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	97.06
cd02025	220	PanK Pantothenate kinase (PanK) catalyzes the phos	97.06
cd02036	179	MinD Bacterial cell division requires the formatio	97.06
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	97.05
PLN02200	234	adenylate kinase family protein	97.04
PRK14531	183	adenylate kinase; Provisional	97.04
KOG2203	772	consensus GTP-binding protein [General function pr	97.03
PRK10751	173	molybdopterin-guanine dinucleotide biosynthesis pr	97.03
COG3638	258	ABC-type phosphate/phosphonate transport system, A	97.03
KOG1424	562	consensus Predicted GTP-binding protein MMR1 [Gene	97.03
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	97.01
cd01428	194	ADK Adenylate kinase (ADK) catalyzes the reversibl	97.0
PTZ00088	229	adenylate kinase 1; Provisional	97.0
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	96.99
PRK14532	188	adenylate kinase; Provisional	96.99
COG1936	180	Predicted nucleotide kinase (related to CMP and AM	96.99
PRK08356	195	hypothetical protein; Provisional	96.97
TIGR01351	210	adk adenylate kinases. Adenylate kinase (EC 2.7.4.	96.97

>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=8.5e-43  Score=232.00  Aligned_cols=202  Identities=66%  Similarity=1.085  Sum_probs=189.4

Q ss_pred             CCCceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCc-cceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCc
Q 028300            9 NSYDLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPT-IGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQ   87 (211)
Q Consensus         9 ~~~~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d   87 (211)
                      ......+||+++|.+|+|||||+.+|....|++..++ .|.++....+.+++...++.+|||+|+++|+++.+.+++.+-
T Consensus         6 s~~~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaq   85 (209)
T KOG0080|consen    6 SGYDTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQ   85 (209)
T ss_pred             cCcceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCc
Confidence            5667889999999999999999999999999665555 999999999999999999999999999999999999999999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHH
Q 028300           88 GIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQ  167 (211)
Q Consensus        88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~  167 (211)
                      ++|+|||++..++|..+.. |+.++..+...+++-.++|+||+|...++.|..++...|++.+++.|+++||++.++++.
T Consensus        86 GiIlVYDVT~Rdtf~kLd~-W~~Eld~Ystn~diikmlVgNKiDkes~R~V~reEG~kfAr~h~~LFiE~SAkt~~~V~~  164 (209)
T KOG0080|consen   86 GIILVYDVTSRDTFVKLDI-WLKELDLYSTNPDIIKMLVGNKIDKESERVVDREEGLKFARKHRCLFIECSAKTRENVQC  164 (209)
T ss_pred             eeEEEEEccchhhHHhHHH-HHHHHHhhcCCccHhHhhhcccccchhcccccHHHHHHHHHhhCcEEEEcchhhhccHHH
Confidence            9999999999999999966 999999998899999999999999988899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhccchhcccccccccccccCCCCCCCCCCCCCCC
Q 028300          168 CFEQLALKIMEVPSLLEEGSNVVKRNILKQKPENQSPPIGGCCS  211 (211)
Q Consensus       168 l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (211)
                      .|+++++++.+-+...++.+...+.++..+....-+.+.+||||
T Consensus       165 ~FeelveKIi~tp~l~~~~n~~~~~~i~~~p~~~~~~~~g~~Cs  208 (209)
T KOG0080|consen  165 CFEELVEKIIETPSLWEEGNSSAGLDIASDPDGEASAHQGGCCS  208 (209)
T ss_pred             HHHHHHHHHhcCcchhhccCCccccccccCCCcccccccCCccC
Confidence            99999999999999999988888888887666677778888996

>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=5.2e-42  Score=236.36  Aligned_cols=200  Identities=49%  Similarity=0.796  Sum_probs=180.0

Q ss_pred             CCCceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCc
Q 028300            9 NSYDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQ   87 (211)
Q Consensus         9 ~~~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d   87 (211)
                      ..++..+||+++|+.|+|||.|+.||..+.| +.+..|.|.++..+.+.+++..+++++|||+|+++|++....++++++
T Consensus         4 ~~~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ah   83 (205)
T KOG0084|consen    4 PEYDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAH   83 (205)
T ss_pred             cccceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCC
Confidence            4568899999999999999999999999999 789999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCe-EEEeeccCCCcHH
Q 028300           88 GIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSL-FLECSAKTRENVE  166 (211)
Q Consensus        88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~Sa~~~~gv~  166 (211)
                      ++|+|||+++.+||.++.. |+.+++.+ ...++|.++|+||+|+.+.+.+..++++.++..++++ |+++||+++.+|+
T Consensus        84 Gii~vyDiT~~~SF~~v~~-Wi~Ei~~~-~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~NVe  161 (205)
T KOG0084|consen   84 GIIFVYDITKQESFNNVKR-WIQEIDRY-ASENVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIPIFLETSAKDSTNVE  161 (205)
T ss_pred             eEEEEEEcccHHHhhhHHH-HHHHhhhh-ccCCCCeEEEeeccccHhheecCHHHHHHHHHhcCCcceeecccCCccCHH
Confidence            9999999999999999999 99999988 6678999999999999999999999999999999999 9999999999999


Q ss_pred             HHHHHHHHHHHhccchhcccccccccccccCCCCCCCCCCCCCCC
Q 028300          167 QCFEQLALKIMEVPSLLEEGSNVVKRNILKQKPENQSPPIGGCCS  211 (211)
Q Consensus       167 ~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (211)
                      +.|..|...+..........+......... .+++.....++||+
T Consensus       162 ~~F~~la~~lk~~~~~~~~~~~~~~~~~ql-~~~p~~~~~~~~C~  205 (205)
T KOG0084|consen  162 DAFLTLAKELKQRKGLHVKWSTASLESVQL-KGTPVKKSNGGCCE  205 (205)
T ss_pred             HHHHHHHHHHHHhcccCCCCCcCCCCceee-CCCCcccccCCCCC
Confidence            999999999999887766665322222222 22566677778996

>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=8.1e-42  Score=234.54  Aligned_cols=197  Identities=40%  Similarity=0.667  Sum_probs=173.9

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEE
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFISSSVDD-LSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGII   90 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (211)
                      ...+||+++|..++|||||+.|+..+.|.. ..+|.|-.+....+.+.+..+++.+|||+|+++|.++.++++++++++|
T Consensus         3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAi   82 (200)
T KOG0092|consen    3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAI   82 (200)
T ss_pred             cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEE
Confidence            568999999999999999999999999955 5899999999999999999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHHH
Q 028300           91 LVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFE  170 (211)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~  170 (211)
                      +|||+++.+||..+.. |...+... ..+++-+.+|+||+|+.+.+++..+++..++...+..|+++||+++.|++++|.
T Consensus        83 vvYDit~~~SF~~aK~-WvkeL~~~-~~~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~gll~~ETSAKTg~Nv~~if~  160 (200)
T KOG0092|consen   83 VVYDITDEESFEKAKN-WVKELQRQ-ASPNIVIALVGNKADLLERREVEFEEAQAYAESQGLLFFETSAKTGENVNEIFQ  160 (200)
T ss_pred             EEEecccHHHHHHHHH-HHHHHHhh-CCCCeEEEEecchhhhhhcccccHHHHHHHHHhcCCEEEEEecccccCHHHHHH
Confidence            9999999999999999 99999887 448889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhccchhcccccccccccccCCCCCCCCCCCCCCC
Q 028300          171 QLALKIMEVPSLLEEGSNVVKRNILKQKPENQSPPIGGCCS  211 (211)
Q Consensus       171 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (211)
                      .|.+.+............-........+.+ +++..++|||
T Consensus       161 ~Ia~~lp~~~~~~~~~~~~~~~g~~l~~~~-~~~~~~~~C~  200 (200)
T KOG0092|consen  161 AIAEKLPCSDPQERQGLPNRRQGVDLNSNQ-EPARPSGCCA  200 (200)
T ss_pred             HHHHhccCccccccccccccccceecccCC-CCcCcCCcCC
Confidence            999999988876654211111222222222 7888999997

>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=6.7e-41  Score=230.13  Aligned_cols=199  Identities=37%  Similarity=0.593  Sum_probs=171.0

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEE
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGII   90 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (211)
                      -+.+||+++|..++||||||++++.+.| ..|..|.|.++....+.+.+..+.+++|||+|+++|+.+.+.+++++.++|
T Consensus        20 ~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vav   99 (221)
T KOG0094|consen   20 LKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   99 (221)
T ss_pred             ceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEE
Confidence            3459999999999999999999999999 789999999999999999999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHHH
Q 028300           91 LVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFE  170 (211)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~  170 (211)
                      +|||+++.+||++... |+..+.......++-+++|+||.||.+++++..++....++++++.|+++||+.|.||+.+|.
T Consensus       100 iVyDit~~~Sfe~t~k-Wi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~a~f~etsak~g~NVk~lFr  178 (221)
T KOG0094|consen  100 IVYDITDRNSFENTSK-WIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKAKELNAEFIETSAKAGENVKQLFR  178 (221)
T ss_pred             EEEeccccchHHHHHH-HHHHHHhccCCCceEEEEEcccccccchhhhhHHHHHHHHHHhCcEEEEecccCCCCHHHHHH
Confidence            9999999999999999 988887665666799999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhccchhccc--ccccccccccCCCCCCCCCCCCCCC
Q 028300          171 QLALKIMEVPSLLEEG--SNVVKRNILKQKPENQSPPIGGCCS  211 (211)
Q Consensus       171 ~i~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  211 (211)
                      .|...+.+........  +...--++.....+++.++-++|||
T Consensus       179 rIaa~l~~~~~~~~~~~~~~~~~i~~k~~~~~~~~s~~~~~~C  221 (221)
T KOG0094|consen  179 RIAAALPGMEVLEILSKQESMVDINLKGSPNEQQASKPGLCSC  221 (221)
T ss_pred             HHHHhccCccccccccccccceeEEccCCCCcccccCCCCCCC
Confidence            9888888775532111  1122222222233334444567988

>PLN03118 Rab family protein; Provisional

Probab=100.00  E-value=1.4e-39  Score=238.65  Aligned_cols=211  Identities=91%  Similarity=1.337  Sum_probs=189.9

Q ss_pred             CCCCCCCCCCCceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchh
Q 028300            1 MGSSSGQSNSYDLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTS   80 (211)
Q Consensus         1 ~~~~~~~~~~~~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~   80 (211)
                      ||+....+......+||+|+|++|+|||||+++|....+..+.++.+.++....+.+++..+.+.|||+||++.+..++.
T Consensus         1 ~~~~~~~~~~~~~~~kv~ivG~~~vGKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~   80 (211)
T PLN03118          1 MGSSSGQSSGYDLSFKILLIGDSGVGKSSLLVSFISSSVEDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTS   80 (211)
T ss_pred             CCcccccccccCcceEEEEECcCCCCHHHHHHHHHhCCCCCcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHH
Confidence            78888888999999999999999999999999999988888888888888777788888889999999999999999999


Q ss_pred             hhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeecc
Q 028300           81 SYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAK  160 (211)
Q Consensus        81 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~  160 (211)
                      .+++.+|++|+|||++++++++++...|...+..+....+.|+++|+||+|+.....+..++...++...+++|+++||+
T Consensus        81 ~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~SAk  160 (211)
T PLN03118         81 SYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAKEHGCLFLECSAK  160 (211)
T ss_pred             HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCEEEEEeCC
Confidence            99999999999999999999999988788877655445678999999999997777777777778888888999999999


Q ss_pred             CCCcHHHHHHHHHHHHHhccchhcccccccccccccCCCCCCCCCCCCCCC
Q 028300          161 TRENVEQCFEQLALKIMEVPSLLEEGSNVVKRNILKQKPENQSPPIGGCCS  211 (211)
Q Consensus       161 ~~~gv~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (211)
                      ++.|++++|++|...+.+.....++.....+++..++....+.|.+.+|||
T Consensus       161 ~~~~v~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (211)
T PLN03118        161 TRENVEQCFEELALKIMEVPSLLEEGSTAVKRNILKQKPEHQPPPNGGCCS  211 (211)
T ss_pred             CCCCHHHHHHHHHHHHHhhhhhhhcccccccccccccccccCCCCcCCCCC
Confidence            999999999999999999988888888888999999988888899999987

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=100.00  E-value=3.1e-38  Score=230.02  Aligned_cols=195  Identities=33%  Similarity=0.571  Sum_probs=169.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEEC-CEEEEEEEEeCCChhhhccchhhhccCCcEEEEE
Q 028300           15 FKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVA-GKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILV   92 (211)
Q Consensus        15 ~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (211)
                      +||+++|++|||||||+++|..+.+ ..+.++.+.++....+.+. +..+.+.+||++|++.+..++..+++++|++|+|
T Consensus         1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv   80 (201)
T cd04107           1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV   80 (201)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence            5899999999999999999999888 5677888888777777777 7789999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHhhhhc---cCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcC-CeEEEeeccCCCcHHHH
Q 028300           93 YDVTRRETFTNLSDVWAKEVDLYS---TNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHG-SLFLECSAKTRENVEQC  168 (211)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~~~~~~~---~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~gv~~l  168 (211)
                      ||++++++++.+.. |...+....   ...++|++||+||+|+.+.+.+..++..+++...+ .+|+++||++|.|++++
T Consensus        81 ~D~t~~~s~~~~~~-~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~  159 (201)
T cd04107          81 FDVTRPSTFEAVLK-WKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGWFETSAKEGINIEEA  159 (201)
T ss_pred             EECCCHHHHHHHHH-HHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCceEEEEeCCCCCCHHHH
Confidence            99999999999987 777765432   23678999999999997667778888889998888 68999999999999999


Q ss_pred             HHHHHHHHHhccchhcccccccccccccCCCCCCCCCCCCCC
Q 028300          169 FEQLALKIMEVPSLLEEGSNVVKRNILKQKPENQSPPIGGCC  210 (211)
Q Consensus       169 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (211)
                      |++|.+.+.+......+.....+.......++.+.....+||
T Consensus       160 f~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (201)
T cd04107         160 MRFLVKNILANDKNLQQAETPEDGSVIDLKQTTTKKKSKGCC  201 (201)
T ss_pred             HHHHHHHHHHhchhhHhhcCCCcccccccccceeccccCCCC
Confidence            999999999888777777766666666777777788888999

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=4.2e-38  Score=220.11  Aligned_cols=170  Identities=54%  Similarity=0.885  Sum_probs=163.3

Q ss_pred             CCceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcE
Q 028300           10 SYDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQG   88 (211)
Q Consensus        10 ~~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~   88 (211)
                      +++..+||+++|.++||||+|+.++..+.| ..+..+.|.++..+.+.+++..+.+++|||+|+++|+++...+++.+++
T Consensus         8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~g   87 (207)
T KOG0078|consen    8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMG   87 (207)
T ss_pred             CcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCe
Confidence            788999999999999999999999999999 7899999999999999999999999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHH
Q 028300           89 IILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQC  168 (211)
Q Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l  168 (211)
                      +++|||+++..||+++.. |+..++.+ ...++|+++|+||+|+...+.|..+..+.++..+|++|+|+||++|.+|++.
T Consensus        88 i~LvyDitne~Sfeni~~-W~~~I~e~-a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI~ea  165 (207)
T KOG0078|consen   88 ILLVYDITNEKSFENIRN-WIKNIDEH-ASDDVVKILVGNKCDLEEKRQVSKERGEALAREYGIKFFETSAKTNFNIEEA  165 (207)
T ss_pred             eEEEEEccchHHHHHHHH-HHHHHHhh-CCCCCcEEEeeccccccccccccHHHHHHHHHHhCCeEEEccccCCCCHHHH
Confidence            999999999999999999 99999988 5669999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhccc
Q 028300          169 FEQLALKIMEVPS  181 (211)
Q Consensus       169 ~~~i~~~~~~~~~  181 (211)
                      |-.+.+.+++...
T Consensus       166 F~~La~~i~~k~~  178 (207)
T KOG0078|consen  166 FLSLARDILQKLE  178 (207)
T ss_pred             HHHHHHHHHhhcc
Confidence            9999999997543

>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.4e-37  Score=216.63  Aligned_cols=180  Identities=48%  Similarity=0.763  Sum_probs=168.8

Q ss_pred             CCCCCCCCCCCceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccch
Q 028300            1 MGSSSGQSNSYDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLT   79 (211)
Q Consensus         1 ~~~~~~~~~~~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~   79 (211)
                      |+.....+...+..+||+++|++++|||-|+.++..++| .+..+|.|.++....+.++++.++.++|||+|+++|+...
T Consensus         1 ~~~~~~~~~~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAit   80 (222)
T KOG0087|consen    1 MARRRDKSEEYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAIT   80 (222)
T ss_pred             CCCccCCccccceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhcccc
Confidence            555566678899999999999999999999999999999 7788999999999999999999999999999999999999


Q ss_pred             hhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeec
Q 028300           80 SSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSA  159 (211)
Q Consensus        80 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa  159 (211)
                      ..+++.+-+.++|||++...+|+++.. |+.+++.+ ...++++++|+||+||...+.+..++.+.++...+..++++||
T Consensus        81 SaYYrgAvGAllVYDITr~~Tfenv~r-WL~ELRdh-ad~nivimLvGNK~DL~~lraV~te~~k~~Ae~~~l~f~EtSA  158 (222)
T KOG0087|consen   81 SAYYRGAVGALLVYDITRRQTFENVER-WLKELRDH-ADSNIVIMLVGNKSDLNHLRAVPTEDGKAFAEKEGLFFLETSA  158 (222)
T ss_pred             chhhcccceeEEEEechhHHHHHHHHH-HHHHHHhc-CCCCeEEEEeecchhhhhccccchhhhHhHHHhcCceEEEecc
Confidence            999999999999999999999999988 99999988 6679999999999999999999999999999999999999999


Q ss_pred             cCCCcHHHHHHHHHHHHHhccch
Q 028300          160 KTRENVEQCFEQLALKIMEVPSL  182 (211)
Q Consensus       160 ~~~~gv~~l~~~i~~~~~~~~~~  182 (211)
                      .+..+++..|..++..+...-..
T Consensus       159 l~~tNVe~aF~~~l~~I~~~vs~  181 (222)
T KOG0087|consen  159 LDATNVEKAFERVLTEIYKIVSK  181 (222)
T ss_pred             cccccHHHHHHHHHHHHHHHHHH
Confidence            99999999999999988876543

>cd04120 Rab12 Rab12 subfamily

Probab=100.00  E-value=2.5e-36  Score=218.78  Aligned_cols=166  Identities=45%  Similarity=0.817  Sum_probs=148.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEEEE
Q 028300           15 FKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVY   93 (211)
Q Consensus        15 ~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (211)
                      +.|+++|..|||||||++++..+.| ..+.++.+.++....+.+++..+.+.+||++|++.|..++..+++++|++|+||
T Consensus         1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf   80 (202)
T cd04120           1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY   80 (202)
T ss_pred             CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence            3689999999999999999999999 667788888888888888888999999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHc-CCeEEEeeccCCCcHHHHHHHH
Q 028300           94 DVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEH-GSLFLECSAKTRENVEQCFEQL  172 (211)
Q Consensus        94 d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~-~~~~~~~Sa~~~~gv~~l~~~i  172 (211)
                      |++++++|+++.. |...+... ...++|+++|+||+|+.+.+++...+..+++..+ ++.|+++||++|.||+++|.++
T Consensus        81 Dvtd~~Sf~~l~~-w~~~i~~~-~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~F~~l  158 (202)
T cd04120          81 DITKKETFDDLPK-WMKMIDKY-ASEDAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKL  158 (202)
T ss_pred             ECcCHHHHHHHHH-HHHHHHHh-CCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHH
Confidence            9999999999987 88887655 3467999999999999877888888888888775 7899999999999999999999


Q ss_pred             HHHHHhccch
Q 028300          173 ALKIMEVPSL  182 (211)
Q Consensus       173 ~~~~~~~~~~  182 (211)
                      ++.+.+....
T Consensus       159 ~~~~~~~~~~  168 (202)
T cd04120         159 VDDILKKMPL  168 (202)
T ss_pred             HHHHHHhCcc
Confidence            9988775433

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic

>cd04121 Rab40 Rab40 subfamily

Probab=100.00  E-value=3.1e-36  Score=216.36  Aligned_cols=166  Identities=40%  Similarity=0.675  Sum_probs=150.4

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEE
Q 028300           11 YDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGI   89 (211)
Q Consensus        11 ~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~   89 (211)
                      .+..+||+++|..|+|||||+++|..+.+ ..+.++.+.++....+.+++..+.+.+||++|++.|..++..+++.+|++
T Consensus         3 ~~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~i   82 (189)
T cd04121           3 YDYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGI   82 (189)
T ss_pred             CCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEE
Confidence            45679999999999999999999999888 56667888888777788888899999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHH
Q 028300           90 ILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCF  169 (211)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~  169 (211)
                      |+|||++++.+|+++.. |++.+...  ..++|++||+||.|+...+.+..++++.++..++++|++|||++|.||+++|
T Consensus        83 llVfD~t~~~Sf~~~~~-w~~~i~~~--~~~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~~~~e~SAk~g~~V~~~F  159 (189)
T cd04121          83 ILVYDITNRWSFDGIDR-WIKEIDEH--APGVPKILVGNRLHLAFKRQVATEQAQAYAERNGMTFFEVSPLCNFNITESF  159 (189)
T ss_pred             EEEEECcCHHHHHHHHH-HHHHHHHh--CCCCCEEEEEECccchhccCCCHHHHHHHHHHcCCEEEEecCCCCCCHHHHH
Confidence            99999999999999987 88888765  3589999999999998878888899999999999999999999999999999


Q ss_pred             HHHHHHHHhc
Q 028300          170 EQLALKIMEV  179 (211)
Q Consensus       170 ~~i~~~~~~~  179 (211)
                      ++|.+.+...
T Consensus       160 ~~l~~~i~~~  169 (189)
T cd04121         160 TELARIVLMR  169 (189)
T ss_pred             HHHHHHHHHh
Confidence            9999877643

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>KOG0394 consensus Ras-related GTPase [General function prediction only]

Probab=100.00  E-value=2.2e-36  Score=205.94  Aligned_cols=172  Identities=37%  Similarity=0.652  Sum_probs=157.1

Q ss_pred             CCceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcE
Q 028300           10 SYDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQG   88 (211)
Q Consensus        10 ~~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~   88 (211)
                      .....+||+++|++|+|||||++++.+.+| ..+..+.|.++..+.+.+++..+.+++|||+|+++|.++.-.+++.+|.
T Consensus         5 ~K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDc   84 (210)
T KOG0394|consen    5 RKRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADC   84 (210)
T ss_pred             CcccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCce
Confidence            345679999999999999999999999999 7899999999999999999999999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHhhhhcc---CCCccEEEEeecCCCCCC--cccCHHHHHHHHHHcC-CeEEEeeccCC
Q 028300           89 IILVYDVTRRETFTNLSDVWAKEVDLYST---NQDCVKMLVGNKVDRDSE--RVVSREEGIALAKEHG-SLFLECSAKTR  162 (211)
Q Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~~~p~viv~nK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~~~Sa~~~  162 (211)
                      .++|||++++.||+++.. |+.++-.+..   +...|+||++||+|+...  +.+....++.++...+ +||||+||+..
T Consensus        85 Cvlvydv~~~~Sfe~L~~-Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSAK~~  163 (210)
T KOG0394|consen   85 CVLVYDVNNPKSFENLEN-WRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSAKEA  163 (210)
T ss_pred             EEEEeecCChhhhccHHH-HHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEeccccc
Confidence            999999999999999999 9888765533   356799999999999653  7889999999988754 89999999999


Q ss_pred             CcHHHHHHHHHHHHHhccch
Q 028300          163 ENVEQCFEQLALKIMEVPSL  182 (211)
Q Consensus       163 ~gv~~l~~~i~~~~~~~~~~  182 (211)
                      .+|.+.|+.+...++.....
T Consensus       164 ~NV~~AFe~ia~~aL~~E~~  183 (210)
T KOG0394|consen  164 TNVDEAFEEIARRALANEDR  183 (210)
T ss_pred             ccHHHHHHHHHHHHHhccch
Confidence            99999999999999988865

>cd04110 Rab35 Rab35 subfamily

Probab=100.00  E-value=1.3e-35  Score=215.69  Aligned_cols=195  Identities=43%  Similarity=0.689  Sum_probs=162.6

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEE
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGII   90 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (211)
                      +..+||+|+|++|||||||+++|.+..+ ..+.++.+.++....+...+..+.+.+||+||++.+..++..+++++|+++
T Consensus         4 ~~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~ii   83 (199)
T cd04110           4 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVI   83 (199)
T ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEE
Confidence            4579999999999999999999999988 567788888877777777788889999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHHH
Q 028300           91 LVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFE  170 (211)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~  170 (211)
                      +|||++++++++.+.. |+..+...  ....|++||+||+|+.+...+...+...++...+++|+++||+++.|++++|+
T Consensus        84 lv~D~~~~~s~~~~~~-~~~~i~~~--~~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~lf~  160 (199)
T cd04110          84 VVYDVTNGESFVNVKR-WLQEIEQN--CDDVCKVLVGNKNDDPERKVVETEDAYKFAGQMGISLFETSAKENINVEEMFN  160 (199)
T ss_pred             EEEECCCHHHHHHHHH-HHHHHHHh--CCCCCEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCcCHHHHHH
Confidence            9999999999999987 88777654  45789999999999987777777888888888889999999999999999999


Q ss_pred             HHHHHHHhccchhcccccccccccccCCCCCCCCCCCCCC
Q 028300          171 QLALKIMEVPSLLEEGSNVVKRNILKQKPENQSPPIGGCC  210 (211)
Q Consensus       171 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (211)
                      +|...+............... .......+...+.+..||
T Consensus       161 ~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  199 (199)
T cd04110         161 CITELVLRAKKDNLAKQQQQQ-QNDVVKLPKNSKRKKRCC  199 (199)
T ss_pred             HHHHHHHHhhhccCcccccCC-ccccCccchhccccccCC
Confidence            999999876554433333222 223445555667788888

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>PLN03110 Rab GTPase; Provisional

Probab=100.00  E-value=3.9e-35  Score=215.56  Aligned_cols=167  Identities=49%  Similarity=0.809  Sum_probs=149.9

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEE
Q 028300           11 YDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGI   89 (211)
Q Consensus        11 ~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~   89 (211)
                      .+..+||+++|++|+|||||+++|.+..+ ..+.++.+.++....+.+.+..+.+.|||++|++++..++..+++.++++
T Consensus         9 ~~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~   88 (216)
T PLN03110          9 YDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGA   88 (216)
T ss_pred             cCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEE
Confidence            45679999999999999999999999888 56778888888888888888889999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHH
Q 028300           90 ILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCF  169 (211)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~  169 (211)
                      |+|||++++.+++.+.. |+..+... ...++|+++|+||+|+.+.+.+..++...++..++++|+++||+++.|++++|
T Consensus        89 ilv~d~~~~~s~~~~~~-~~~~~~~~-~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~SA~~g~~v~~lf  166 (216)
T PLN03110         89 LLVYDITKRQTFDNVQR-WLRELRDH-ADSNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGLSFLETSALEATNVEKAF  166 (216)
T ss_pred             EEEEECCChHHHHHHHH-HHHHHHHh-CCCCCeEEEEEEChhcccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence            99999999999999988 88777655 34689999999999998777788888888888889999999999999999999


Q ss_pred             HHHHHHHHhc
Q 028300          170 EQLALKIMEV  179 (211)
Q Consensus       170 ~~i~~~~~~~  179 (211)
                      ++|+..+...
T Consensus       167 ~~l~~~i~~~  176 (216)
T PLN03110        167 QTILLEIYHI  176 (216)
T ss_pred             HHHHHHHHHH
Confidence            9999988664

>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=7.3e-36  Score=203.78  Aligned_cols=167  Identities=51%  Similarity=0.854  Sum_probs=156.2

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEE
Q 028300           11 YDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGI   89 (211)
Q Consensus        11 ~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~   89 (211)
                      ....+|++++|+.|||||+|+.+++...| +.+..|.|.++-.+.+.+++..+++++|||+|++.|++....+++.+-+.
T Consensus         3 ~~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~Ga   82 (216)
T KOG0098|consen    3 YAYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGA   82 (216)
T ss_pred             ccceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcce
Confidence            45679999999999999999999999999 77778999999999999999999999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHH
Q 028300           90 ILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCF  169 (211)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~  169 (211)
                      |+|||++..++|..+.. |+..++.+ ..+++.+++++||+||...+.|..++.+.|+++++..++++||+++.|++++|
T Consensus        83 lLVydit~r~sF~hL~~-wL~D~rq~-~~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgLifmETSakt~~~VEEaF  160 (216)
T KOG0098|consen   83 LLVYDITRRESFNHLTS-WLEDARQH-SNENMVIMLIGNKSDLEARREVSKEEGEAFAREHGLIFMETSAKTAENVEEAF  160 (216)
T ss_pred             EEEEEccchhhHHHHHH-HHHHHHHh-cCCCcEEEEEcchhhhhccccccHHHHHHHHHHcCceeehhhhhhhhhHHHHH
Confidence            99999999999999999 88888776 47899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhc
Q 028300          170 EQLALKIMEV  179 (211)
Q Consensus       170 ~~i~~~~~~~  179 (211)
                      ..+...+...
T Consensus       161 ~nta~~Iy~~  170 (216)
T KOG0098|consen  161 INTAKEIYRK  170 (216)
T ss_pred             HHHHHHHHHH
Confidence            8777666544

>cd04112 Rab26 Rab26 subfamily

Probab=100.00  E-value=3.1e-35  Score=212.56  Aligned_cols=189  Identities=44%  Similarity=0.751  Sum_probs=156.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhhCCCC--CCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEEE
Q 028300           15 FKILLIGDSGVGKSSLLVSFISSSVD--DLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILV   92 (211)
Q Consensus        15 ~~I~v~G~~~~GKssli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (211)
                      +||+++|++|||||||++++..+.+.  .+.++.+.++....+.+++..+.+.|||+||+..+...+..+++.+|++|+|
T Consensus         1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v   80 (191)
T cd04112           1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL   80 (191)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence            58999999999999999999998873  5667777777766677888889999999999999988889999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHHHHH
Q 028300           93 YDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQL  172 (211)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i  172 (211)
                      ||+++.++++++.. |...+... ...++|+++|+||+|+...+.+..++...++..++++|+++||+++.|++++|.+|
T Consensus        81 ~D~~~~~s~~~~~~-~~~~i~~~-~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~Sa~~~~~v~~l~~~l  158 (191)
T cd04112          81 YDITNKASFDNIRA-WLTEIKEY-AQEDVVIMLLGNKADMSGERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAV  158 (191)
T ss_pred             EECCCHHHHHHHHH-HHHHHHHh-CCCCCcEEEEEEcccchhccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence            99999999999988 88877765 34578999999999997667777778888888889999999999999999999999


Q ss_pred             HHHHHhccchhcccccccccccccCCCCCCCCCCCCCC
Q 028300          173 ALKIMEVPSLLEEGSNVVKRNILKQKPENQSPPIGGCC  210 (211)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (211)
                      .+.+.+.....+......     .....++-.++.+||
T Consensus       159 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~  191 (191)
T cd04112         159 AKELKHRKYEQPDEGKFK-----ISDYVTKQKKISRCC  191 (191)
T ss_pred             HHHHHHhccccCCCCcEE-----eccccCcccccCCCC
Confidence            999987754432222211     233345556678898

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04126 Rab20 Rab20 subfamily

Probab=100.00  E-value=2e-35  Score=216.32  Aligned_cols=187  Identities=34%  Similarity=0.535  Sum_probs=150.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEEEEE
Q 028300           15 FKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYD   94 (211)
Q Consensus        15 ~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d   94 (211)
                      +||+++|.+|+|||||+++|..+.|..+.++.+..+....+    ..+.+.+||++|++.+..++..+++.+|++|+|||
T Consensus         1 ~KIvivG~~~vGKTSLi~r~~~~~f~~~~~Tig~~~~~~~~----~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~D   76 (220)
T cd04126           1 LKVVLLGDMNVGKTSLLHRYMERRFKDTVSTVGGAFYLKQW----GPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYD   76 (220)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCCCCCCCccceEEEEEEe----eEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEE
Confidence            58999999999999999999999986667777766553332    56789999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCC-------------------CcccCHHHHHHHHHHcC----
Q 028300           95 VTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDS-------------------ERVVSREEGIALAKEHG----  151 (211)
Q Consensus        95 ~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~-------------------~~~v~~~~~~~~~~~~~----  151 (211)
                      ++++++|+++...|..... . ...++|++||+||+|+.+                   .+.+..++++.+++..+    
T Consensus        77 vt~~~Sf~~l~~~~~~l~~-~-~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~  154 (220)
T cd04126          77 VSNVQSLEELEDRFLGLTD-T-ANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKM  154 (220)
T ss_pred             CCCHHHHHHHHHHHHHHHH-h-cCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCcccc
Confidence            9999999999885555443 2 345799999999999965                   57788899999998876    


Q ss_pred             ----------CeEEEeeccCCCcHHHHHHHHHHHHHhccchhcccccccccccccCCCCCCCCCCCCCC
Q 028300          152 ----------SLFLECSAKTRENVEQCFEQLALKIMEVPSLLEEGSNVVKRNILKQKPENQSPPIGGCC  210 (211)
Q Consensus       152 ----------~~~~~~Sa~~~~gv~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (211)
                                ++|++|||++|.||+++|.++++.+..............   .....+.+.+..|.+||
T Consensus       155 ~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~  220 (220)
T cd04126         155 LDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLPLILAQRAEANRT---QGTVNLPNPKRSKSKCC  220 (220)
T ss_pred             ccccccccccceEEEeeCCCCCCHHHHHHHHHHHHHHHHHhhhhhhhhh---hccccCCCcccCCCCCC
Confidence                      689999999999999999999998887655444422222   22223344556778888

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo

>cd04144 Ras2 Ras2 subfamily

Probab=100.00  E-value=2e-35  Score=213.39  Aligned_cols=185  Identities=35%  Similarity=0.525  Sum_probs=150.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEEEEE
Q 028300           16 KILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYD   94 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d   94 (211)
                      ||+++|.+|||||||+++|..+.+ ..+.++.+..+ .....+++..+.+.+||++|++++..++..+++.+|++|+|||
T Consensus         1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d   79 (190)
T cd04144           1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSY-RKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYS   79 (190)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhE-EEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEE
Confidence            589999999999999999998888 44566666444 3445677888899999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHhhhhcc--CCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHHHHH
Q 028300           95 VTRRETFTNLSDVWAKEVDLYST--NQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQL  172 (211)
Q Consensus        95 ~~~~~s~~~~~~~~~~~~~~~~~--~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i  172 (211)
                      +++.++++.+.. |...+.....  ..++|+++|+||+|+...+.+...+...++..++++|+++||++|.|++++|+++
T Consensus        80 ~~~~~s~~~~~~-~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l  158 (190)
T cd04144          80 ITSRSTFERVER-FREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTL  158 (190)
T ss_pred             CCCHHHHHHHHH-HHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHH
Confidence            999999999988 7666654322  3578999999999997777778777888888889999999999999999999999


Q ss_pred             HHHHHhccchhcccccccccccccCCCCCCCCCCCCCCC
Q 028300          173 ALKIMEVPSLLEEGSNVVKRNILKQKPENQSPPIGGCCS  211 (211)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (211)
                      ++.+.+......         .....+..+..++.+|||
T Consensus       159 ~~~l~~~~~~~~---------~~~~~~~~~~~~~~~~~~  188 (190)
T cd04144         159 VRALRQQRQGGQ---------GPKGGPTKKKEKKKRKCV  188 (190)
T ss_pred             HHHHHHhhcccC---------CCcCCCCCcccccccCce
Confidence            998876554421         124455556666677775

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=6.4e-36  Score=196.37  Aligned_cols=176  Identities=46%  Similarity=0.780  Sum_probs=163.7

Q ss_pred             CCCCCCCCceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhh
Q 028300            4 SSGQSNSYDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSY   82 (211)
Q Consensus         4 ~~~~~~~~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~   82 (211)
                      .....+.++..+||.++|...+|||||+.+++...| .....+.|.++..+++.-....+.+++|||.|++.|+.+...+
T Consensus        11 ~~s~dqnFDymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTay   90 (193)
T KOG0093|consen   11 KDSIDQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAY   90 (193)
T ss_pred             cccccccccceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHH
Confidence            334557788899999999999999999999999999 7788899999999888877788999999999999999999999


Q ss_pred             ccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCC
Q 028300           83 YRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTR  162 (211)
Q Consensus        83 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~  162 (211)
                      +++++++|++||.++.+||..+.. |.-.+..+ ...+.|+++|+||+|+..++.+..+..+.++.++|..|||+||+.+
T Consensus        91 yRgamgfiLmyDitNeeSf~svqd-w~tqIkty-sw~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGfefFEtSaK~N  168 (193)
T KOG0093|consen   91 YRGAMGFILMYDITNEESFNSVQD-WITQIKTY-SWDNAQVILVGNKCDMDSERVISHERGRQLADQLGFEFFETSAKEN  168 (193)
T ss_pred             hhccceEEEEEecCCHHHHHHHHH-HHHHheee-eccCceEEEEecccCCccceeeeHHHHHHHHHHhChHHhhhccccc
Confidence            999999999999999999999999 99999877 7789999999999999999999999999999999999999999999


Q ss_pred             CcHHHHHHHHHHHHHhccc
Q 028300          163 ENVEQCFEQLALKIMEVPS  181 (211)
Q Consensus       163 ~gv~~l~~~i~~~~~~~~~  181 (211)
                      .+++++|+.++..+.+...
T Consensus       169 inVk~~Fe~lv~~Ic~kms  187 (193)
T KOG0093|consen  169 INVKQVFERLVDIICDKMS  187 (193)
T ss_pred             ccHHHHHHHHHHHHHHHhh
Confidence            9999999999998877654

>cd04125 RabA_like RabA-like subfamily

Probab=100.00  E-value=7e-35  Score=210.30  Aligned_cols=185  Identities=43%  Similarity=0.665  Sum_probs=157.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhhCCCC-CCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEEEE
Q 028300           15 FKILLIGDSGVGKSSLLVSFISSSVD-DLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVY   93 (211)
Q Consensus        15 ~~I~v~G~~~~GKssli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (211)
                      +||+++|++|||||||+++|..+.+. .+.++.+.++....+.+++..+.+.+||++|...+...+..+++++|++++||
T Consensus         1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~   80 (188)
T cd04125           1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY   80 (188)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence            58999999999999999999999884 47888888887777888888899999999999999989999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHHHHHH
Q 028300           94 DVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLA  173 (211)
Q Consensus        94 d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~  173 (211)
                      |+++++++..+.. |+..+..+ ....+|+++|+||+|+.+...+...+...++...+++|+++||+++.|++++|.+++
T Consensus        81 d~~~~~s~~~i~~-~~~~i~~~-~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~i~~~f~~l~  158 (188)
T cd04125          81 DVTDQESFENLKF-WINEINRY-ARENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNIPFFETSAKQSINVEEAFILLV  158 (188)
T ss_pred             ECcCHHHHHHHHH-HHHHHHHh-CCCCCeEEEEEECCCCcccccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence            9999999999988 88887765 345689999999999987777777888888888889999999999999999999999


Q ss_pred             HHHHhccchhcccccccccccccCCCCCCCCCCCCCCC
Q 028300          174 LKIMEVPSLLEEGSNVVKRNILKQKPENQSPPIGGCCS  211 (211)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (211)
                      +.+.++....+          ..-.+-++.+.+..||+
T Consensus       159 ~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~  186 (188)
T cd04125         159 KLIIKRLEEQE----------LSPKNIKQQFKKKNNCF  186 (188)
T ss_pred             HHHHHHhhcCc----------CCccccccccccccCcc
Confidence            99876533221          12245566677788886

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>PTZ00369 Ras-like protein; Provisional

Probab=100.00  E-value=6.1e-35  Score=210.69  Aligned_cols=166  Identities=37%  Similarity=0.598  Sum_probs=143.7

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEE
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGII   90 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (211)
                      ...+||+++|.+|+|||||++++..+.+ ..+.++.+..+ ...+.+++..+.+.+||+||++++..++..+++.+|+++
T Consensus         3 ~~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~ii   81 (189)
T PTZ00369          3 STEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFL   81 (189)
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE-EEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEE
Confidence            3469999999999999999999999888 56667776555 455677888899999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHHH
Q 028300           91 LVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFE  170 (211)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~  170 (211)
                      +|||++++++++++.. |...+.......++|+++|+||+|+.+...+...+...++..++++|+++||+++.|++++|.
T Consensus        82 lv~D~s~~~s~~~~~~-~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~Sak~~~gi~~~~~  160 (189)
T PTZ00369         82 CVYSITSRSSFEEIAS-FREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFY  160 (189)
T ss_pred             EEEECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHH
Confidence            9999999999999988 777665554456899999999999977677777777778888889999999999999999999


Q ss_pred             HHHHHHHhc
Q 028300          171 QLALKIMEV  179 (211)
Q Consensus       171 ~i~~~~~~~  179 (211)
                      +|++.+.+.
T Consensus       161 ~l~~~l~~~  169 (189)
T PTZ00369        161 ELVREIRKY  169 (189)
T ss_pred             HHHHHHHHH
Confidence            999887654

>cd04109 Rab28 Rab28 subfamily

Probab=100.00  E-value=1.5e-34  Score=212.48  Aligned_cols=165  Identities=36%  Similarity=0.560  Sum_probs=145.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECC-EEEEEEEEeCCChhhhccchhhhccCCcEEEEE
Q 028300           15 FKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAG-KRLKLTIWDTAGQERFRTLTSSYYRGAQGIILV   92 (211)
Q Consensus        15 ~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (211)
                      +||+++|++|||||||+++|....+ ..+.++.+.++....+.+++ ..+.+.+||++|+..+..++..+++.+|++|+|
T Consensus         1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV   80 (215)
T cd04109           1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV   80 (215)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence            5899999999999999999999888 66788888888777777754 578999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHhhhhcc--CCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHHH
Q 028300           93 YDVTRRETFTNLSDVWAKEVDLYST--NQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFE  170 (211)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~~~~~~~~--~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~  170 (211)
                      ||++++++++.+.. |...+.....  ..++|+++|+||+|+.+.+.+..++...++..++++++++||++|.|++++|+
T Consensus        81 ~D~t~~~s~~~~~~-w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~~iSAktg~gv~~lf~  159 (215)
T cd04109          81 YDVTNSQSFENLED-WYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGMESCLVSAKTGDRVNLLFQ  159 (215)
T ss_pred             EECCCHHHHHHHHH-HHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHH
Confidence            99999999999987 8888765532  24578999999999987777888888888888999999999999999999999


Q ss_pred             HHHHHHHhcc
Q 028300          171 QLALKIMEVP  180 (211)
Q Consensus       171 ~i~~~~~~~~  180 (211)
                      +|.+.+....
T Consensus       160 ~l~~~l~~~~  169 (215)
T cd04109         160 QLAAELLGVD  169 (215)
T ss_pred             HHHHHHHhcc
Confidence            9999988753

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>cd04122 Rab14 Rab14 subfamily

Probab=100.00  E-value=1.7e-34  Score=204.33  Aligned_cols=163  Identities=52%  Similarity=0.855  Sum_probs=145.3

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEEE
Q 028300           14 SFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILV   92 (211)
Q Consensus        14 ~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (211)
                      .+||+++|++|+|||||++++..+.+ ..+.++.+.++....+.+.+..+.+.+||+||++.+...+..+++++|++|+|
T Consensus         2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv   81 (166)
T cd04122           2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV   81 (166)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence            47999999999999999999999988 55667778888777778888889999999999999999899999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHHHHH
Q 028300           93 YDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQL  172 (211)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i  172 (211)
                      ||++++++++.+.. |...+... ...+.|+++|+||+|+...+.+..++...++...+++++++||++|.|++++|.++
T Consensus        82 ~d~~~~~s~~~~~~-~~~~~~~~-~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~e~f~~l  159 (166)
T cd04122          82 YDITRRSTYNHLSS-WLTDARNL-TNPNTVIFLIGNKADLEAQRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLET  159 (166)
T ss_pred             EECCCHHHHHHHHH-HHHHHHHh-CCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHH
Confidence            99999999999988 77776544 34678999999999998777788888888888889999999999999999999999


Q ss_pred             HHHHHh
Q 028300          173 ALKIME  178 (211)
Q Consensus       173 ~~~~~~  178 (211)
                      .+.+.+
T Consensus       160 ~~~~~~  165 (166)
T cd04122         160 AKKIYQ  165 (166)
T ss_pred             HHHHhh
Confidence            987754

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily

Probab=100.00  E-value=2e-34  Score=212.18  Aligned_cols=171  Identities=27%  Similarity=0.506  Sum_probs=148.7

Q ss_pred             CCCCCCceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhcc
Q 028300            6 GQSNSYDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYR   84 (211)
Q Consensus         6 ~~~~~~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~   84 (211)
                      +.++.....+||+++|++|||||+|+++|..+.| ..+.|+.+..+. ..+.+++..+.+.||||+|++.|..+...+++
T Consensus         5 ~~~~~~~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~-~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~   83 (232)
T cd04174           5 RIPQPLVMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT-AGLETEEQRVELSLWDTSGSPYYDNVRPLCYS   83 (232)
T ss_pred             ccCcCceeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeE-EEEEECCEEEEEEEEeCCCchhhHHHHHHHcC
Confidence            3445667789999999999999999999999988 667788876664 45677888999999999999999999999999


Q ss_pred             CCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCC------------CcccCHHHHHHHHHHcCC
Q 028300           85 GAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDS------------ERVVSREEGIALAKEHGS  152 (211)
Q Consensus        85 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~------------~~~v~~~~~~~~~~~~~~  152 (211)
                      ++|++|+|||++++++|+++...|...+...  ..+.|+++|+||+|+.+            .+.+..+++.+++..+++
T Consensus        84 ~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~--~~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~  161 (232)
T cd04174          84 DSDAVLLCFDISRPETVDSALKKWKAEIMDY--CPSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGA  161 (232)
T ss_pred             CCcEEEEEEECCChHHHHHHHHHHHHHHHHh--CCCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCC
Confidence            9999999999999999999754599888765  35789999999999854            256888999999999998


Q ss_pred             -eEEEeeccCCC-cHHHHHHHHHHHHHhc
Q 028300          153 -LFLECSAKTRE-NVEQCFEQLALKIMEV  179 (211)
Q Consensus       153 -~~~~~Sa~~~~-gv~~l~~~i~~~~~~~  179 (211)
                       +|++|||++|. ||+++|..++..+.+.
T Consensus       162 ~~~~EtSAktg~~~V~e~F~~~~~~~~~~  190 (232)
T cd04174         162 EVYLECSAFTSEKSIHSIFRSASLLCLNK  190 (232)
T ss_pred             CEEEEccCCcCCcCHHHHHHHHHHHHHHh
Confidence             69999999997 8999999999987764

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily

Probab=100.00  E-value=1.3e-34  Score=206.95  Aligned_cols=163  Identities=28%  Similarity=0.571  Sum_probs=143.7

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEE
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGII   90 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (211)
                      ...+||+++|.+|+|||||++++..+.| ..+.|+.+..+. ..+.+++..+.+.+|||+|++.|..++..+++++|++|
T Consensus         3 ~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~-~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~i   81 (182)
T cd04172           3 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT-ASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL   81 (182)
T ss_pred             cceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeE-EEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEE
Confidence            4678999999999999999999999998 667788876554 56778888999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCC------------CcccCHHHHHHHHHHcCC-eEEEe
Q 028300           91 LVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDS------------ERVVSREEGIALAKEHGS-LFLEC  157 (211)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~------------~~~v~~~~~~~~~~~~~~-~~~~~  157 (211)
                      +|||+++++||+++...|...+...  .++.|+++|+||+|+.+            .+.+..+++.++++.+++ +|++|
T Consensus        82 lvyDit~~~Sf~~~~~~w~~~i~~~--~~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~  159 (182)
T cd04172          82 ICFDISRPETLDSVLKKWKGEIQEF--CPNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIEC  159 (182)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHH--CCCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEEC
Confidence            9999999999999855599888765  35799999999999854            345888999999999996 89999


Q ss_pred             eccCCCc-HHHHHHHHHHHHH
Q 028300          158 SAKTREN-VEQCFEQLALKIM  177 (211)
Q Consensus       158 Sa~~~~g-v~~l~~~i~~~~~  177 (211)
                      ||+++.| |+++|..+++.+.
T Consensus       160 SAk~~~n~v~~~F~~~~~~~~  180 (182)
T cd04172         160 SALQSENSVRDIFHVATLACV  180 (182)
T ss_pred             CcCCCCCCHHHHHHHHHHHHh
Confidence            9999998 9999999988654

Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight

>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=9e-36  Score=195.88  Aligned_cols=167  Identities=50%  Similarity=0.818  Sum_probs=157.1

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEE
Q 028300           11 YDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGI   89 (211)
Q Consensus        11 ~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~   89 (211)
                      .+.-++.+|+|++|+|||+|+.++....| ..|..+.|.++..+++.+++..+++.+||++|++.|+.+...+++..+++
T Consensus         5 ~dhLfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv   84 (198)
T KOG0079|consen    5 YDHLFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGV   84 (198)
T ss_pred             HHHHHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceE
Confidence            34557889999999999999999999998 78999999999999999999999999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHH
Q 028300           90 ILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCF  169 (211)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~  169 (211)
                      ++|||+++.+||.++.. |+++++..  .+.+|-++|+||.|.++.+.+..++++.++...++.+|++|++.+++++.+|
T Consensus        85 ~vVYDVTn~ESF~Nv~r-WLeei~~n--cdsv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mgie~FETSaKe~~NvE~mF  161 (198)
T KOG0079|consen   85 IVVYDVTNGESFNNVKR-WLEEIRNN--CDSVPKVLVGNKNDDPERRVVDTEDARAFALQMGIELFETSAKENENVEAMF  161 (198)
T ss_pred             EEEEECcchhhhHhHHH-HHHHHHhc--CccccceecccCCCCccceeeehHHHHHHHHhcCchheehhhhhcccchHHH
Confidence            99999999999999999 99998865  6689999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcc
Q 028300          170 EQLALKIMEVP  180 (211)
Q Consensus       170 ~~i~~~~~~~~  180 (211)
                      .-|.+.++...
T Consensus       162 ~cit~qvl~~k  172 (198)
T KOG0079|consen  162 HCITKQVLQAK  172 (198)
T ss_pred             HHHHHHHHHHH
Confidence            99998887665

>cd04133 Rop_like Rop subfamily

Probab=100.00  E-value=2e-34  Score=204.85  Aligned_cols=160  Identities=31%  Similarity=0.626  Sum_probs=141.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEEEE
Q 028300           15 FKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVY   93 (211)
Q Consensus        15 ~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (211)
                      +||+++|.+|+|||||+.++..+.| ..+.+|.+..+ ...+.+++..+.+.+|||+|+++|..+...+++++|++|+||
T Consensus         2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~-~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvy   80 (176)
T cd04133           2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF   80 (176)
T ss_pred             eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeee-EEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEE
Confidence            6899999999999999999999999 56788887665 345677888999999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCc----------ccCHHHHHHHHHHcCC-eEEEeeccCC
Q 028300           94 DVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSER----------VVSREEGIALAKEHGS-LFLECSAKTR  162 (211)
Q Consensus        94 d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~----------~v~~~~~~~~~~~~~~-~~~~~Sa~~~  162 (211)
                      |+++++||+++...|...+...  ..++|++||+||+|+.+.+          .+..++...+++..+. +|++|||+++
T Consensus        81 d~~~~~Sf~~~~~~w~~~i~~~--~~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~  158 (176)
T cd04133          81 SLISRASYENVLKKWVPELRHY--APNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQ  158 (176)
T ss_pred             EcCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCcc
Confidence            9999999999854499888765  3579999999999996542          4778889999999887 6999999999


Q ss_pred             CcHHHHHHHHHHHHH
Q 028300          163 ENVEQCFEQLALKIM  177 (211)
Q Consensus       163 ~gv~~l~~~i~~~~~  177 (211)
                      .||+++|+.+++.+.
T Consensus       159 ~nV~~~F~~~~~~~~  173 (176)
T cd04133         159 QNVKAVFDAAIKVVL  173 (176)
T ss_pred             cCHHHHHHHHHHHHh
Confidence            999999999998763

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=100.00  E-value=4e-34  Score=202.66  Aligned_cols=164  Identities=55%  Similarity=0.891  Sum_probs=146.9

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEE
Q 028300           13 LSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIIL   91 (211)
Q Consensus        13 ~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   91 (211)
                      ..+||+++|++|+|||||++++.+..+ ..+.++.+.++....+.+.+..+.+.+||+||+..+...+..+++++|++++
T Consensus         2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~   81 (167)
T cd01867           2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIIL   81 (167)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEE
Confidence            468999999999999999999999998 6678888888877777888888999999999999998888999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHHHH
Q 028300           92 VYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQ  171 (211)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~  171 (211)
                      |||+++++++.++.. |+..+..+ ...++|+++|+||+|+.+...+..++...++..++.+++++||+++.|++++|.+
T Consensus        82 v~d~~~~~s~~~~~~-~~~~i~~~-~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~  159 (167)
T cd01867          82 VYDITDEKSFENIRN-WMRNIEEH-ASEDVERMLVGNKCDMEEKRVVSKEEGEALADEYGIKFLETSAKANINVEEAFFT  159 (167)
T ss_pred             EEECcCHHHHHhHHH-HHHHHHHh-CCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence            999999999999988 88877655 3467999999999999877777777788888888999999999999999999999


Q ss_pred             HHHHHHh
Q 028300          172 LALKIME  178 (211)
Q Consensus       172 i~~~~~~  178 (211)
                      +.+.+..
T Consensus       160 i~~~~~~  166 (167)
T cd01867         160 LAKDIKK  166 (167)
T ss_pred             HHHHHHh
Confidence            9998764

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>cd04127 Rab27A Rab27a subfamily

Probab=100.00  E-value=2.8e-34  Score=205.80  Aligned_cols=166  Identities=39%  Similarity=0.681  Sum_probs=145.6

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEEC----------CEEEEEEEEeCCChhhhccchh
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVA----------GKRLKLTIWDTAGQERFRTLTS   80 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~----------~~~~~~~l~D~~g~~~~~~~~~   80 (211)
                      +..+||+++|++|||||||++++..+.+ ..+.++.+.++....+.+.          +..+.+.+||+||++++..++.
T Consensus         2 ~~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~   81 (180)
T cd04127           2 DYLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTT   81 (180)
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHH
Confidence            3569999999999999999999999888 6667787777766555543          3568899999999999999999


Q ss_pred             hhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeecc
Q 028300           81 SYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAK  160 (211)
Q Consensus        81 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~  160 (211)
                      .+++++|++++|||+++++++.++.. |+..+.......+.|+++|+||+|+.+.+.+..++..+++..++++++++||+
T Consensus        82 ~~~~~~~~~i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak  160 (180)
T cd04127          82 AFFRDAMGFLLIFDLTNEQSFLNVRN-WMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALADKYGIPYFETSAA  160 (180)
T ss_pred             HHhCCCCEEEEEEECCCHHHHHHHHH-HHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHHHcCCeEEEEeCC
Confidence            99999999999999999999999988 88887765445688999999999998777788888888999999999999999


Q ss_pred             CCCcHHHHHHHHHHHHHh
Q 028300          161 TRENVEQCFEQLALKIME  178 (211)
Q Consensus       161 ~~~gv~~l~~~i~~~~~~  178 (211)
                      ++.|++++|++|.+.+.+
T Consensus       161 ~~~~v~~l~~~l~~~~~~  178 (180)
T cd04127         161 TGTNVEKAVERLLDLVMK  178 (180)
T ss_pred             CCCCHHHHHHHHHHHHHh
Confidence            999999999999987764

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=100.00  E-value=2.7e-34  Score=204.21  Aligned_cols=163  Identities=37%  Similarity=0.590  Sum_probs=143.6

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEEE
Q 028300           14 SFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILV   92 (211)
Q Consensus        14 ~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (211)
                      .+||+++|.+|+|||||++++..+.+ ..+.++.+..+. ..+.+++..+.+.+||++|+.++..++..+++.+|++++|
T Consensus         2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv   80 (172)
T cd04141           2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYK-QQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIIC   80 (172)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceEE-EEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEE
Confidence            58999999999999999999999988 466677765443 4567788889999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHHHHH
Q 028300           93 YDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQL  172 (211)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i  172 (211)
                      ||++++.+++.+.. |...+.......++|+++|+||+|+.+.+.+..++...+++.++++|++|||+++.||+++|+++
T Consensus        81 ~d~~~~~Sf~~~~~-~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~~f~~l  159 (172)
T cd04141          81 YSVTDRHSFQEASE-FKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLAREFNCPFFETSAALRHYIDDAFHGL  159 (172)
T ss_pred             EECCchhHHHHHHH-HHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHHHHhCCEEEEEecCCCCCHHHHHHHH
Confidence            99999999999987 77776654345689999999999998777788888888888889999999999999999999999


Q ss_pred             HHHHHh
Q 028300          173 ALKIME  178 (211)
Q Consensus       173 ~~~~~~  178 (211)
                      ++.+.+
T Consensus       160 ~~~~~~  165 (172)
T cd04141         160 VREIRR  165 (172)
T ss_pred             HHHHHH
Confidence            988775

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>cd04111 Rab39 Rab39 subfamily

Probab=100.00  E-value=6.1e-34  Score=208.44  Aligned_cols=167  Identities=47%  Similarity=0.779  Sum_probs=146.0

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEE-CCEEEEEEEEeCCChhhhccchhhhccCCcEEEE
Q 028300           14 SFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTV-AGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIIL   91 (211)
Q Consensus        14 ~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   91 (211)
                      .+||+|+|++|||||||+++|.++.+ ..+.++.+.++....+.+ .+..+.+.+||++|++.+..++..+++++|++++
T Consensus         2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil   81 (211)
T cd04111           2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL   81 (211)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence            58999999999999999999999888 445677777777766666 4567899999999999999889999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHHHH
Q 028300           92 VYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQ  171 (211)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~  171 (211)
                      |||++++++++++.. |...+........+|++||+||+|+.+...+..++...++..++++|+++||+++.|++++|++
T Consensus        82 v~D~~~~~Sf~~l~~-~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~  160 (211)
T cd04111          82 VFDITNRESFEHVHD-WLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFEL  160 (211)
T ss_pred             EEECCCHHHHHHHHH-HHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHH
Confidence            999999999999988 7777665534557889999999999877778888888889889999999999999999999999


Q ss_pred             HHHHHHhccc
Q 028300          172 LALKIMEVPS  181 (211)
Q Consensus       172 i~~~~~~~~~  181 (211)
                      |.+.+.+...
T Consensus       161 l~~~~~~~~~  170 (211)
T cd04111         161 LTQEIYERIK  170 (211)
T ss_pred             HHHHHHHHhh
Confidence            9998877643

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=2.3e-35  Score=196.15  Aligned_cols=169  Identities=38%  Similarity=0.681  Sum_probs=155.4

Q ss_pred             CCceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcE
Q 028300           10 SYDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQG   88 (211)
Q Consensus        10 ~~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~   88 (211)
                      .....|||+++|..=+|||||+-+++.+.| .....+..-.+..+.+.+++....+.+|||+|+++|..+-+.+++.+++
T Consensus         9 g~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnG   88 (218)
T KOG0088|consen    9 GKSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNG   88 (218)
T ss_pred             CCceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCc
Confidence            346789999999999999999999999999 5666677777888888888899999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHH
Q 028300           89 IILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQC  168 (211)
Q Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l  168 (211)
                      .++|||++|.+||+.+.. |..+++.. ....+-++||+||+|+.+++.+..+++..++..-|+.|+++||+++.||.++
T Consensus        89 alLVyDITDrdSFqKVKn-WV~Elr~m-lGnei~l~IVGNKiDLEeeR~Vt~qeAe~YAesvGA~y~eTSAk~N~Gi~el  166 (218)
T KOG0088|consen   89 ALLVYDITDRDSFQKVKN-WVLELRTM-LGNEIELLIVGNKIDLEEERQVTRQEAEAYAESVGALYMETSAKDNVGISEL  166 (218)
T ss_pred             eEEEEeccchHHHHHHHH-HHHHHHHH-hCCeeEEEEecCcccHHHhhhhhHHHHHHHHHhhchhheecccccccCHHHH
Confidence            999999999999999999 99998876 4456889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcc
Q 028300          169 FEQLALKIMEVP  180 (211)
Q Consensus       169 ~~~i~~~~~~~~  180 (211)
                      |+.+.+.+.+..
T Consensus       167 Fe~Lt~~MiE~~  178 (218)
T KOG0088|consen  167 FESLTAKMIEHS  178 (218)
T ss_pred             HHHHHHHHHHHh
Confidence            999999888775

>cd01875 RhoG RhoG subfamily

Probab=100.00  E-value=5.6e-34  Score=205.85  Aligned_cols=163  Identities=28%  Similarity=0.533  Sum_probs=141.1

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEE
Q 028300           13 LSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIIL   91 (211)
Q Consensus        13 ~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   91 (211)
                      ..+||+++|+.|||||||+.++..+.| ..+.++.+..+. ..+.+++..+.+.+||++|++.|+.++..+++++|++|+
T Consensus         2 ~~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~il   80 (191)
T cd01875           2 QSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYS-AQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFII   80 (191)
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeE-EEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEE
Confidence            358999999999999999999999998 677788876554 445678888999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCc------------ccCHHHHHHHHHHcC-CeEEEee
Q 028300           92 VYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSER------------VVSREEGIALAKEHG-SLFLECS  158 (211)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~------------~v~~~~~~~~~~~~~-~~~~~~S  158 (211)
                      |||+++++||+++...|...+...  ..++|++||+||.|+.+..            .+..++...+++.++ ++|+++|
T Consensus        81 vydit~~~Sf~~~~~~w~~~i~~~--~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~S  158 (191)
T cd01875          81 CFSIASPSSYENVRHKWHPEVCHH--CPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECS  158 (191)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeC
Confidence            999999999999986688877654  3579999999999996442            356677888888888 5899999


Q ss_pred             ccCCCcHHHHHHHHHHHHHh
Q 028300          159 AKTRENVEQCFEQLALKIME  178 (211)
Q Consensus       159 a~~~~gv~~l~~~i~~~~~~  178 (211)
                      |++|.||+++|.++++.+..
T Consensus       159 Ak~g~~v~e~f~~l~~~~~~  178 (191)
T cd01875         159 ALNQDGVKEVFAEAVRAVLN  178 (191)
T ss_pred             CCCCCCHHHHHHHHHHHHhc
Confidence            99999999999999987754

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin

>cd04131 Rnd Rnd subfamily

Probab=100.00  E-value=4.9e-34  Score=203.63  Aligned_cols=161  Identities=29%  Similarity=0.575  Sum_probs=140.5

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEEE
Q 028300           14 SFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILV   92 (211)
Q Consensus        14 ~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (211)
                      .+||+++|++|+|||||++++..+.| ..+.++.+..+. ..+.+++..+.+.+|||+|++.+..+...+++++|++|+|
T Consensus         1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilv   79 (178)
T cd04131           1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYT-ASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLIC   79 (178)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEE-EEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEE
Confidence            36999999999999999999999988 566777766553 5677788899999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCC------------CcccCHHHHHHHHHHcCC-eEEEeec
Q 028300           93 YDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDS------------ERVVSREEGIALAKEHGS-LFLECSA  159 (211)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~------------~~~v~~~~~~~~~~~~~~-~~~~~Sa  159 (211)
                      ||+++++||+++...|...+...  .++.|+++|+||+|+.+            .+.+..+++.+++..+++ +|++|||
T Consensus        80 fdit~~~Sf~~~~~~w~~~i~~~--~~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA  157 (178)
T cd04131          80 FDISRPETLDSVLKKWRGEIQEF--CPNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSA  157 (178)
T ss_pred             EECCChhhHHHHHHHHHHHHHHH--CCCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECcc
Confidence            99999999999754599888765  35899999999999854            245888899999999997 7999999


Q ss_pred             cCCCc-HHHHHHHHHHHHH
Q 028300          160 KTREN-VEQCFEQLALKIM  177 (211)
Q Consensus       160 ~~~~g-v~~l~~~i~~~~~  177 (211)
                      ++|.+ |+++|..+++..+
T Consensus       158 ~~~~~~v~~~F~~~~~~~~  176 (178)
T cd04131         158 FTSEKSVRDIFHVATMACL  176 (178)
T ss_pred             CcCCcCHHHHHHHHHHHHh
Confidence            99995 9999999998654

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04118 Rab24 Rab24 subfamily

Probab=100.00  E-value=1.5e-33  Score=204.16  Aligned_cols=187  Identities=29%  Similarity=0.505  Sum_probs=151.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhhCCCC--CCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEEE
Q 028300           15 FKILLIGDSGVGKSSLLVSFISSSVD--DLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILV   92 (211)
Q Consensus        15 ~~I~v~G~~~~GKssli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (211)
                      +||+|+|++|+|||||+++|..+.+.  .+.++.+..+....+.+.+..+.+.+||++|..++..++..+++++|++++|
T Consensus         1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv   80 (193)
T cd04118           1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC   80 (193)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence            58999999999999999999999884  4778888888777788888889999999999999988888999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCC----cccCHHHHHHHHHHcCCeEEEeeccCCCcHHHH
Q 028300           93 YDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSE----RVVSREEGIALAKEHGSLFLECSAKTRENVEQC  168 (211)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~----~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l  168 (211)
                      ||+++..+++++.. |+..+...  ..+.|+++|+||+|+...    ..+...+...++...+++++++||+++.|++++
T Consensus        81 ~d~~~~~s~~~~~~-~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l  157 (193)
T cd04118          81 YDLTDSSSFERAKF-WVKELQNL--EEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDEL  157 (193)
T ss_pred             EECCCHHHHHHHHH-HHHHHHhc--CCCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHH
Confidence            99999999999877 88877654  347999999999998532    344556677777788899999999999999999


Q ss_pred             HHHHHHHHHhccchhcccccccccccccCCCCCCCCCCCCCC
Q 028300          169 FEQLALKIMEVPSLLEEGSNVVKRNILKQKPENQSPPIGGCC  210 (211)
Q Consensus       169 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (211)
                      |++|.+.+.+........   . +......+  +.+..++||
T Consensus       158 ~~~i~~~~~~~~~~~~~~---~-~~~~~~~~--~~~~~~~~~  193 (193)
T cd04118         158 FQKVAEDFVSRANNQMNT---E-KGVDLGQK--KNSYFYSCC  193 (193)
T ss_pred             HHHHHHHHHHhcccccCC---C-CccccCCc--CCCCCCCCC
Confidence            999999887655322111   1 22222222  335888898

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita

>cd01865 Rab3 Rab3 subfamily

Probab=100.00  E-value=1.3e-33  Score=199.63  Aligned_cols=161  Identities=48%  Similarity=0.820  Sum_probs=142.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEEEE
Q 028300           15 FKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVY   93 (211)
Q Consensus        15 ~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (211)
                      +||+++|++|||||||++++.+..+ ..+.++.+.++....+...+..+.+.+||++|+..+...+..+++++|++++||
T Consensus         2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~   81 (165)
T cd01865           2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY   81 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence            7999999999999999999999998 566788887777666767777899999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHHHHHH
Q 028300           94 DVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLA  173 (211)
Q Consensus        94 d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~  173 (211)
                      |++++++++.+.. |...+... ....+|+++|+||+|+.+.+.+..++..+++..++++++++||+++.|++++|+++.
T Consensus        82 d~~~~~s~~~~~~-~~~~i~~~-~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~  159 (165)
T cd01865          82 DITNEESFNAVQD-WSTQIKTY-SWDNAQVILVGNKCDMEDERVVSSERGRQLADQLGFEFFEASAKENINVKQVFERLV  159 (165)
T ss_pred             ECCCHHHHHHHHH-HHHHHHHh-CCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence            9999999999988 88887654 345789999999999987777777777888888889999999999999999999998


Q ss_pred             HHHH
Q 028300          174 LKIM  177 (211)
Q Consensus       174 ~~~~  177 (211)
                      +.+.
T Consensus       160 ~~~~  163 (165)
T cd01865         160 DIIC  163 (165)
T ss_pred             HHHH
Confidence            8654

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>cd04132 Rho4_like Rho4-like subfamily

Probab=100.00  E-value=7.2e-34  Score=204.89  Aligned_cols=179  Identities=30%  Similarity=0.526  Sum_probs=147.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEEC-CEEEEEEEEeCCChhhhccchhhhccCCcEEEEE
Q 028300           15 FKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVA-GKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILV   92 (211)
Q Consensus        15 ~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (211)
                      +||+++|++|+|||||+++|.++.+ ..+.++.+..+.. .+... +..+.+.+||++|++++..++..+++++|++++|
T Consensus         1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~-~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v   79 (187)
T cd04132           1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVT-NIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLIC   79 (187)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEE-EEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEE
Confidence            5899999999999999999999988 5566666655533 34444 6678999999999999998898999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCC----cccCHHHHHHHHHHcCC-eEEEeeccCCCcHHH
Q 028300           93 YDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSE----RVVSREEGIALAKEHGS-LFLECSAKTRENVEQ  167 (211)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~----~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~gv~~  167 (211)
                      ||+++.++++++...|...+...  ..++|+++|+||+|+...    +.+...+..+++..+++ +++++||++|.|+++
T Consensus        80 ~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~  157 (187)
T cd04132          80 YAVDNPTSLDNVEDKWFPEVNHF--CPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAKTMENVEE  157 (187)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEccCCCCCCHHH
Confidence            99999999999976688777654  458999999999998543    24667788888888888 899999999999999


Q ss_pred             HHHHHHHHHHhccchhcccccccccccccCCCCCCCCCCCCCCC
Q 028300          168 CFEQLALKIMEVPSLLEEGSNVVKRNILKQKPENQSPPIGGCCS  211 (211)
Q Consensus       168 l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (211)
                      +|.++++.+.......               ...+...++.||+
T Consensus       158 ~f~~l~~~~~~~~~~~---------------~~~~~~~~~~c~~  186 (187)
T cd04132         158 VFDTAIEEALKKEGKA---------------IFKKKKKKRKCVV  186 (187)
T ss_pred             HHHHHHHHHHhhhhhh---------------hhccCCCCccccc
Confidence            9999999887655433               4556666677764

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=100.00  E-value=1.1e-33  Score=200.34  Aligned_cols=163  Identities=33%  Similarity=0.625  Sum_probs=144.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEEEE
Q 028300           15 FKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVY   93 (211)
Q Consensus        15 ~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (211)
                      +||+++|++|||||||++++++..+ ..+.++.+.++....+...+..+.+.+||++|++.+..++..+++.+|++|+||
T Consensus         1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~   80 (168)
T cd04119           1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY   80 (168)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence            5899999999999999999999988 677788888887778888888999999999999999888999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHhhhhccC----CCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHH
Q 028300           94 DVTRRETFTNLSDVWAKEVDLYSTN----QDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCF  169 (211)
Q Consensus        94 d~~~~~s~~~~~~~~~~~~~~~~~~----~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~  169 (211)
                      |++++.+++.+.. |...+......    .+.|+++|+||+|+.+...+..++...++...+++++++||+++.|++++|
T Consensus        81 D~~~~~s~~~~~~-~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  159 (168)
T cd04119          81 DVTDRQSFEALDS-WLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMF  159 (168)
T ss_pred             ECCCHHHHHhHHH-HHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHH
Confidence            9999999999887 88777655332    579999999999997666677777777888888999999999999999999


Q ss_pred             HHHHHHHHh
Q 028300          170 EQLALKIME  178 (211)
Q Consensus       170 ~~i~~~~~~  178 (211)
                      ++|++.+.+
T Consensus       160 ~~l~~~l~~  168 (168)
T cd04119         160 QTLFSSIVD  168 (168)
T ss_pred             HHHHHHHhC
Confidence            999988753

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>cd04117 Rab15 Rab15 subfamily

Probab=100.00  E-value=1.1e-33  Score=199.18  Aligned_cols=159  Identities=46%  Similarity=0.814  Sum_probs=142.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEEEE
Q 028300           15 FKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVY   93 (211)
Q Consensus        15 ~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (211)
                      +||+++|++|+|||||++++..+.+ ..+.++.+.++....+.+.+..+.+.+||++|+..+..++..+++++|++++||
T Consensus         1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (161)
T cd04117           1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY   80 (161)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence            5899999999999999999999988 556788888777777788888899999999999999988999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHHHHHH
Q 028300           94 DVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLA  173 (211)
Q Consensus        94 d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~  173 (211)
                      |++++++++.+.. |+..+... ...+.|+++|+||.|+...+.+..++...+++.++.+|+++||++|.|++++|.+|.
T Consensus        81 d~~~~~sf~~~~~-~~~~~~~~-~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~  158 (161)
T cd04117          81 DISSERSYQHIMK-WVSDVDEY-APEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYGMDFFETSACTNSNIKESFTRLT  158 (161)
T ss_pred             ECCCHHHHHHHHH-HHHHHHHh-CCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence            9999999999987 88877655 345799999999999988788888888899888899999999999999999999998


Q ss_pred             HH
Q 028300          174 LK  175 (211)
Q Consensus       174 ~~  175 (211)
                      +.
T Consensus       159 ~~  160 (161)
T cd04117         159 EL  160 (161)
T ss_pred             hh
Confidence            64

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=100.00  E-value=1.7e-33  Score=199.18  Aligned_cols=163  Identities=55%  Similarity=0.887  Sum_probs=145.2

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEEE
Q 028300           14 SFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILV   92 (211)
Q Consensus        14 ~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (211)
                      .+||+++|++|||||||++++.++.+ ..+.++.+.++....+...+..+.+.+||+||++.+...+..+++++|++++|
T Consensus         2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v   81 (166)
T cd01869           2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV   81 (166)
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence            47999999999999999999999888 55667778777777778888889999999999999998899999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHHHHH
Q 028300           93 YDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQL  172 (211)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i  172 (211)
                      ||+++++++.++.. |+..+... ...+.|+++|+||+|+.....+..++...++..++++++++||++|.|++++|.+|
T Consensus        82 ~d~~~~~s~~~l~~-~~~~~~~~-~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i  159 (166)
T cd01869          82 YDVTDQESFNNVKQ-WLQEIDRY-ASENVNKLLVGNKCDLTDKRVVDYSEAQEFADELGIPFLETSAKNATNVEQAFMTM  159 (166)
T ss_pred             EECcCHHHHHhHHH-HHHHHHHh-CCCCCcEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCcCHHHHHHHH
Confidence            99999999999998 88887655 34578999999999998777788888888888889999999999999999999999


Q ss_pred             HHHHHh
Q 028300          173 ALKIME  178 (211)
Q Consensus       173 ~~~~~~  178 (211)
                      .+.+.+
T Consensus       160 ~~~~~~  165 (166)
T cd01869         160 AREIKK  165 (166)
T ss_pred             HHHHHh
Confidence            987753

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>cd04136 Rap_like Rap-like subfamily

Probab=100.00  E-value=1e-33  Score=199.73  Aligned_cols=161  Identities=40%  Similarity=0.663  Sum_probs=137.7

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEEE
Q 028300           14 SFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILV   92 (211)
Q Consensus        14 ~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (211)
                      ++||+++|++|||||||++++..+.+ ..+.++.+ ......+.+++..+.+.+||+||++++..++..+++++|++++|
T Consensus         1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv   79 (163)
T cd04136           1 EYKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLV   79 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEE
Confidence            47999999999999999999999887 45556655 33345567788889999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHHHHH
Q 028300           93 YDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQL  172 (211)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i  172 (211)
                      ||++++++++++.. |...+.......++|+++|+||+|+.+.+.+..++...+...++.+++++||+++.|++++|+++
T Consensus        80 ~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l  158 (163)
T cd04136          80 YSITSQSSFNDLQD-LREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALARQWGCPFYETSAKSKINVDEVFADL  158 (163)
T ss_pred             EECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Confidence            99999999999988 76666554445689999999999997766777777777778888999999999999999999999


Q ss_pred             HHHH
Q 028300          173 ALKI  176 (211)
Q Consensus       173 ~~~~  176 (211)
                      .+.+
T Consensus       159 ~~~~  162 (163)
T cd04136         159 VRQI  162 (163)
T ss_pred             HHhc
Confidence            8754

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=100.00  E-value=1.7e-33  Score=198.38  Aligned_cols=160  Identities=46%  Similarity=0.766  Sum_probs=148.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEEEEE
Q 028300           16 KILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYD   94 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d   94 (211)
                      ||+++|+++||||||+++|.++.+ ..+.++.+.+.....+..++..+.+.+||++|++.+..+...+++++|++|+|||
T Consensus         1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd   80 (162)
T PF00071_consen    1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD   80 (162)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred             CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            799999999999999999999998 6677888889999999999999999999999999999888999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHHHHHHH
Q 028300           95 VTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLAL  174 (211)
Q Consensus        95 ~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~  174 (211)
                      +++++|++.+.. |...+... ...++|+++|+||.|+.+.+.+..++++.++..++.+|+++|++++.|+.++|..+++
T Consensus        81 ~~~~~S~~~~~~-~~~~i~~~-~~~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~~i~  158 (162)
T PF00071_consen   81 VTDEESFENLKK-WLEEIQKY-KPEDIPIIVVGNKSDLSDEREVSVEEAQEFAKELGVPYFEVSAKNGENVKEIFQELIR  158 (162)
T ss_dssp             TTBHHHHHTHHH-HHHHHHHH-STTTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTTSEEEEEBTTTTTTHHHHHHHHHH
T ss_pred             cccccccccccc-cccccccc-ccccccceeeeccccccccccchhhHHHHHHHHhCCEEEEEECCCCCCHHHHHHHHHH
Confidence            999999999997 99998876 3357999999999999888889999999999999999999999999999999999999


Q ss_pred             HHH
Q 028300          175 KIM  177 (211)
Q Consensus       175 ~~~  177 (211)
                      .++
T Consensus       159 ~i~  161 (162)
T PF00071_consen  159 KIL  161 (162)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            875

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>PLN03108 Rab family protein; Provisional

Probab=100.00  E-value=9.8e-33  Score=202.09  Aligned_cols=166  Identities=50%  Similarity=0.814  Sum_probs=146.8

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEE
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGII   90 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (211)
                      ...+||+++|++|+|||||+++|....+ ..+.++.+.++....+.+.+..+.+.+||++|+..+..++..+++.+|+++
T Consensus         4 ~~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~v   83 (210)
T PLN03108          4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (210)
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEE
Confidence            4569999999999999999999999888 556778888887777888888889999999999999888899999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHHH
Q 028300           91 LVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFE  170 (211)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~  170 (211)
                      +|||++++.+++.+.. |...+... ....+|+++|+||+|+...+.+..++..+++..++++++++||+++.|++++|.
T Consensus        84 lv~D~~~~~s~~~l~~-~~~~~~~~-~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~e~f~  161 (210)
T PLN03108         84 LVYDITRRETFNHLAS-WLEDARQH-ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFI  161 (210)
T ss_pred             EEEECCcHHHHHHHHH-HHHHHHHh-cCCCCcEEEEEECccCccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence            9999999999999887 77666544 345799999999999987777888888899999999999999999999999999


Q ss_pred             HHHHHHHhc
Q 028300          171 QLALKIMEV  179 (211)
Q Consensus       171 ~i~~~~~~~  179 (211)
                      ++++.+.+.
T Consensus       162 ~l~~~~~~~  170 (210)
T PLN03108        162 KTAAKIYKK  170 (210)
T ss_pred             HHHHHHHHH
Confidence            999888764

>cd04175 Rap1 Rap1 subgroup

Probab=100.00  E-value=2.5e-33  Score=197.97  Aligned_cols=162  Identities=38%  Similarity=0.647  Sum_probs=138.7

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEEE
Q 028300           14 SFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILV   92 (211)
Q Consensus        14 ~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (211)
                      ++||+++|.+|||||||++++..+.+ ..+.++.+..+ ...+.+.+..+.+.+||+||++.+..++..+++++|++++|
T Consensus         1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv   79 (164)
T cd04175           1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLV   79 (164)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEE
Confidence            47999999999999999999998887 45566666544 35567778889999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHHHHH
Q 028300           93 YDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQL  172 (211)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i  172 (211)
                      ||+++..+++++.. |...+.......+.|+++|+||+|+.+...+...+...+++.++++|+++||+++.|++++|.++
T Consensus        80 ~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l  158 (164)
T cd04175          80 YSITAQSTFNDLQD-LREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDL  158 (164)
T ss_pred             EECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHH
Confidence            99999999999988 66665544345789999999999998777777777777888888999999999999999999999


Q ss_pred             HHHHH
Q 028300          173 ALKIM  177 (211)
Q Consensus       173 ~~~~~  177 (211)
                      .+.+.
T Consensus       159 ~~~l~  163 (164)
T cd04175         159 VRQIN  163 (164)
T ss_pred             HHHhh
Confidence            87653

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>cd01874 Cdc42 Cdc42 subfamily

Probab=100.00  E-value=2.6e-33  Score=199.69  Aligned_cols=159  Identities=26%  Similarity=0.523  Sum_probs=137.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEEEE
Q 028300           15 FKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVY   93 (211)
Q Consensus        15 ~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (211)
                      +||+++|.+|+|||||++++..+.| ..+.|+.+..+. ..+...+..+.+.+||++|++++..++..+++++|++|+||
T Consensus         2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~   80 (175)
T cd01874           2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF   80 (175)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeE-EEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEE
Confidence            7999999999999999999999998 677788776554 34567788899999999999999988989999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCC------------cccCHHHHHHHHHHcC-CeEEEeecc
Q 028300           94 DVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSE------------RVVSREEGIALAKEHG-SLFLECSAK  160 (211)
Q Consensus        94 d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~------------~~v~~~~~~~~~~~~~-~~~~~~Sa~  160 (211)
                      |++++++++++...|...+...  ..++|+++|+||+|+.+.            +.+..+++.++++..+ +.|+++||+
T Consensus        81 d~~~~~s~~~~~~~w~~~i~~~--~~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~  158 (175)
T cd01874          81 SVVSPSSFENVKEKWVPEITHH--CPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSAL  158 (175)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCC
Confidence            9999999999986688887654  357999999999998543            4566777888888777 689999999


Q ss_pred             CCCcHHHHHHHHHHHH
Q 028300          161 TRENVEQCFEQLALKI  176 (211)
Q Consensus       161 ~~~gv~~l~~~i~~~~  176 (211)
                      +|.|++++|+.++...
T Consensus       159 tg~~v~~~f~~~~~~~  174 (175)
T cd01874         159 TQKGLKNVFDEAILAA  174 (175)
T ss_pred             CCCCHHHHHHHHHHHh
Confidence            9999999999988754

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi

>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily

Probab=100.00  E-value=6.3e-33  Score=203.25  Aligned_cols=163  Identities=26%  Similarity=0.550  Sum_probs=141.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEEEE
Q 028300           15 FKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVY   93 (211)
Q Consensus        15 ~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (211)
                      +||+|+|.+|+|||||+++|..+.| ..+.|+.+..+. ..+.+++..+.+.|||++|++.|..++..+++.+|++|+||
T Consensus         2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~-~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvf   80 (222)
T cd04173           2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYT-ASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICF   80 (222)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceE-EEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEE
Confidence            7999999999999999999999988 567888876664 56677888999999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCC------------cccCHHHHHHHHHHcCC-eEEEeecc
Q 028300           94 DVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSE------------RVVSREEGIALAKEHGS-LFLECSAK  160 (211)
Q Consensus        94 d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~------------~~v~~~~~~~~~~~~~~-~~~~~Sa~  160 (211)
                      |++++++|+++...|...+...  ..+.|++||+||+|+.+.            ..+..++...+++..++ +|+||||+
T Consensus        81 dis~~~Sf~~i~~~w~~~~~~~--~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk  158 (222)
T cd04173          81 DISRPETLDSVLKKWQGETQEF--CPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSR  158 (222)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCC
Confidence            9999999999977788877654  468999999999998542            13677888899999996 89999999


Q ss_pred             CCC-cHHHHHHHHHHHHHhcc
Q 028300          161 TRE-NVEQCFEQLALKIMEVP  180 (211)
Q Consensus       161 ~~~-gv~~l~~~i~~~~~~~~  180 (211)
                      ++. ||+++|..+........
T Consensus       159 ~~~~~V~~~F~~~~~~~~~~~  179 (222)
T cd04173         159 SSERSVRDVFHVATVASLGRG  179 (222)
T ss_pred             cCCcCHHHHHHHHHHHHHhcc
Confidence            988 59999999998776643

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=100.00  E-value=5.1e-33  Score=204.60  Aligned_cols=164  Identities=32%  Similarity=0.534  Sum_probs=143.7

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEE
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGII   90 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (211)
                      ...+||+++|.+|||||||+++++.+.+ ..+.++.+.++....+...+..+.+.+||++|++.+..++..+++.+|++|
T Consensus        11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i   90 (219)
T PLN03071         11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (219)
T ss_pred             CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence            8889999999999999999999999888 677889998888777777778899999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHHH
Q 028300           91 LVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFE  170 (211)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~  170 (211)
                      +|||++++++++.+.. |...+...  ..++|+++|+||+|+.. ..+..++. .+....+++|+++||++|.|++++|.
T Consensus        91 lvfD~~~~~s~~~i~~-w~~~i~~~--~~~~piilvgNK~Dl~~-~~v~~~~~-~~~~~~~~~~~e~SAk~~~~i~~~f~  165 (219)
T PLN03071         91 IMFDVTARLTYKNVPT-WHRDLCRV--CENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFL  165 (219)
T ss_pred             EEEeCCCHHHHHHHHH-HHHHHHHh--CCCCcEEEEEEchhhhh-ccCCHHHH-HHHHhcCCEEEEcCCCCCCCHHHHHH
Confidence            9999999999999987 88887754  45799999999999853 33444444 66677788999999999999999999


Q ss_pred             HHHHHHHhcc
Q 028300          171 QLALKIMEVP  180 (211)
Q Consensus       171 ~i~~~~~~~~  180 (211)
                      +|.+.+.+..
T Consensus       166 ~l~~~~~~~~  175 (219)
T PLN03071        166 YLARKLAGDP  175 (219)
T ss_pred             HHHHHHHcCc
Confidence            9999887653

>cd01868 Rab11_like Rab11-like

Probab=100.00  E-value=6.9e-33  Score=195.89  Aligned_cols=162  Identities=49%  Similarity=0.785  Sum_probs=144.2

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEE
Q 028300           13 LSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIIL   91 (211)
Q Consensus        13 ~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   91 (211)
                      ..+||+++|++|||||||++++.+..+ ..+.++.+.++....+...+..+.+.+||+||+..+..++..+++.++++++
T Consensus         2 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~   81 (165)
T cd01868           2 YLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALL   81 (165)
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEE
Confidence            357999999999999999999999988 5677888888888888888888899999999999999889999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHHHH
Q 028300           92 VYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQ  171 (211)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~  171 (211)
                      |||++++.++.++.. |+..+... ...++|+++|+||+|+...+.+..++...++...+++++++||+++.|++++|++
T Consensus        82 v~d~~~~~s~~~~~~-~~~~~~~~-~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~  159 (165)
T cd01868          82 VYDITKKQTFENVER-WLKELRDH-ADSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQ  159 (165)
T ss_pred             EEECcCHHHHHHHHH-HHHHHHHh-CCCCCeEEEEEECccccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHH
Confidence            999999999999987 88877655 3446999999999999877777777888888888899999999999999999999


Q ss_pred             HHHHH
Q 028300          172 LALKI  176 (211)
Q Consensus       172 i~~~~  176 (211)
                      |++.+
T Consensus       160 l~~~i  164 (165)
T cd01868         160 LLTEI  164 (165)
T ss_pred             HHHHh
Confidence            98765

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=7.3e-34  Score=189.93  Aligned_cols=170  Identities=46%  Similarity=0.782  Sum_probs=155.1

Q ss_pred             CCceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEE-CCEEEEEEEEeCCChhhhccchhhhccCCc
Q 028300           10 SYDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTV-AGKRLKLTIWDTAGQERFRTLTSSYYRGAQ   87 (211)
Q Consensus        10 ~~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d   87 (211)
                      .+...+|++++|++-+|||+|++.+..+.| ....||.|.++..+.+.+ ++..+++++|||+|+++|++....+++++-
T Consensus         4 if~yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsv   83 (213)
T KOG0091|consen    4 IFHYQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSV   83 (213)
T ss_pred             ceEEEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhccc
Confidence            456789999999999999999999999999 667889999998887777 567899999999999999999999999999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHhhhhcc-CCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHH
Q 028300           88 GIILVYDVTRRETFTNLSDVWAKEVDLYST-NQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVE  166 (211)
Q Consensus        88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~  166 (211)
                      ++++|||.++.+||+.+.. |..+...+.. +.++-+.+|++|+|+...++|..++++.++..++..|+|+|+++|.+|+
T Consensus        84 gvllvyditnr~sfehv~~-w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM~FVETSak~g~NVe  162 (213)
T KOG0091|consen   84 GVLLVYDITNRESFEHVEN-WVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHGMAFVETSAKNGCNVE  162 (213)
T ss_pred             ceEEEEeccchhhHHHHHH-HHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHhcCceEEEecccCCCcHH
Confidence            9999999999999999999 8888776655 5667778999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcc
Q 028300          167 QCFEQLALKIMEVP  180 (211)
Q Consensus       167 ~l~~~i~~~~~~~~  180 (211)
                      +.|..|.+.+...-
T Consensus       163 EAF~mlaqeIf~~i  176 (213)
T KOG0091|consen  163 EAFDMLAQEIFQAI  176 (213)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999988776553

>cd04128 Spg1 Spg1p

Probab=100.00  E-value=5.1e-33  Score=199.14  Aligned_cols=165  Identities=27%  Similarity=0.530  Sum_probs=140.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEEEE
Q 028300           15 FKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVY   93 (211)
Q Consensus        15 ~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (211)
                      +||+++|..|+|||||+++|..+.| ..+.++.+.++....+.+++..+.+.+||++|++.+..++..+++++|++++||
T Consensus         1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~   80 (182)
T cd04128           1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF   80 (182)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence            5899999999999999999999988 568889998887777888888999999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCC-----cccCHHHHHHHHHHcCCeEEEeeccCCCcHHHH
Q 028300           94 DVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSE-----RVVSREEGIALAKEHGSLFLECSAKTRENVEQC  168 (211)
Q Consensus        94 d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~-----~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l  168 (211)
                      |++++++++++.. |...+... .....| ++|+||+|+...     .....++...++...+++++++||++|.|++++
T Consensus        81 D~t~~~s~~~i~~-~~~~~~~~-~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~e~SAk~g~~v~~l  157 (182)
T cd04128          81 DLTRKSTLNSIKE-WYRQARGF-NKTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMKAPLIFCSTSHSINVQKI  157 (182)
T ss_pred             ECcCHHHHHHHHH-HHHHHHHh-CCCCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence            9999999999988 88877654 234567 678999998421     112235566777888899999999999999999


Q ss_pred             HHHHHHHHHhccch
Q 028300          169 FEQLALKIMEVPSL  182 (211)
Q Consensus       169 ~~~i~~~~~~~~~~  182 (211)
                      |+++.+.+.+.+..
T Consensus       158 f~~l~~~l~~~~~~  171 (182)
T cd04128         158 FKIVLAKAFDLPLT  171 (182)
T ss_pred             HHHHHHHHHhcCCC
Confidence            99999988765443

Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are

>cd01866 Rab2 Rab2 subfamily

Probab=100.00  E-value=1.4e-32  Score=194.85  Aligned_cols=165  Identities=52%  Similarity=0.844  Sum_probs=145.7

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEE
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGII   90 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (211)
                      +..+||+++|.+|+|||||++++.+..+ ..+.++.+.++....+...+....+.+||++|++++..+...+++.+|+++
T Consensus         2 ~~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il   81 (168)
T cd01866           2 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGAL   81 (168)
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEE
Confidence            3458999999999999999999999887 555677788887777888888889999999999999888889999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHHH
Q 028300           91 LVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFE  170 (211)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~  170 (211)
                      +|||+++++++..+.. |+..+..+ ...++|+++|+||.|+.+...+..++...++...+++++++||+++.|++++|.
T Consensus        82 ~v~d~~~~~s~~~~~~-~~~~~~~~-~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~~~  159 (168)
T cd01866          82 LVYDITRRETFNHLTS-WLEDARQH-SNSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGLIFMETSAKTASNVEEAFI  159 (168)
T ss_pred             EEEECCCHHHHHHHHH-HHHHHHHh-CCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence            9999999999999988 88877655 346899999999999976667788888888888899999999999999999999


Q ss_pred             HHHHHHHh
Q 028300          171 QLALKIME  178 (211)
Q Consensus       171 ~i~~~~~~  178 (211)
                      ++.+.+.+
T Consensus       160 ~~~~~~~~  167 (168)
T cd01866         160 NTAKEIYE  167 (168)
T ss_pred             HHHHHHHh
Confidence            99988754

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>cd04134 Rho3 Rho3 subfamily

Probab=100.00  E-value=9.8e-33  Score=199.14  Aligned_cols=160  Identities=33%  Similarity=0.525  Sum_probs=135.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEEEEE
Q 028300           16 KILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYD   94 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d   94 (211)
                      ||+++|++|||||||+++|..+.+ ..+.++.+..+. ..+..++..+.+.+||++|++.+..++..+++.+|++++|||
T Consensus         2 kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~-~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~d   80 (189)
T cd04134           2 KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYV-HDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFS   80 (189)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeE-EEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEEE
Confidence            799999999999999999999988 456667665543 445667778999999999999999888899999999999999


Q ss_pred             CCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCc------------ccCHHHHHHHHHHcC-CeEEEeeccC
Q 028300           95 VTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSER------------VVSREEGIALAKEHG-SLFLECSAKT  161 (211)
Q Consensus        95 ~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~------------~v~~~~~~~~~~~~~-~~~~~~Sa~~  161 (211)
                      ++++++|+.+...|...+...  ..+.|+++|+||+|+.+..            .+..++...++...+ ++|+++||++
T Consensus        81 v~~~~sf~~~~~~~~~~i~~~--~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~  158 (189)
T cd04134          81 VDSPDSLENVESKWLGEIREH--CPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKL  158 (189)
T ss_pred             CCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCc
Confidence            999999999976688887754  3589999999999996543            245556667777766 6899999999


Q ss_pred             CCcHHHHHHHHHHHHHh
Q 028300          162 RENVEQCFEQLALKIME  178 (211)
Q Consensus       162 ~~gv~~l~~~i~~~~~~  178 (211)
                      |.|++++|.+|.+.+..
T Consensus       159 ~~~v~e~f~~l~~~~~~  175 (189)
T cd04134         159 NRGVNEAFTEAARVALN  175 (189)
T ss_pred             CCCHHHHHHHHHHHHhc
Confidence            99999999999998873

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=100.00  E-value=1.1e-32  Score=195.51  Aligned_cols=163  Identities=34%  Similarity=0.603  Sum_probs=140.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEEEEE
Q 028300           16 KILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYD   94 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d   94 (211)
                      ||+++|.+|||||||++++..+.| ..+.++.+.++....+.+.+..+.+.+||+||++++..++..+++.+|++++|||
T Consensus         2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d   81 (170)
T cd04108           2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD   81 (170)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence            799999999999999999999988 6778888888877778888888999999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcc--cCHHHHHHHHHHcCCeEEEeeccCCCcHHHHHHHH
Q 028300           95 VTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERV--VSREEGIALAKEHGSLFLECSAKTRENVEQCFEQL  172 (211)
Q Consensus        95 ~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~--v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i  172 (211)
                      +++++++..+.. |...+.........|+++|+||+|+.+...  +..++...++..++.+|+++||+++.|++++|+.|
T Consensus        82 ~~~~~s~~~~~~-~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~v~~lf~~l  160 (170)
T cd04108          82 LTDVASLEHTRQ-WLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAEYWSVSALSGENVREFFFRV  160 (170)
T ss_pred             CcCHHHHHHHHH-HHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHH
Confidence            999999999987 887764432345678999999999865433  23455667777788899999999999999999999


Q ss_pred             HHHHHhc
Q 028300          173 ALKIMEV  179 (211)
Q Consensus       173 ~~~~~~~  179 (211)
                      .+.+.+.
T Consensus       161 ~~~~~~~  167 (170)
T cd04108         161 AALTFEL  167 (170)
T ss_pred             HHHHHHc
Confidence            9887653

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>cd04113 Rab4 Rab4 subfamily

Probab=100.00  E-value=9e-33  Score=194.55  Aligned_cols=159  Identities=50%  Similarity=0.801  Sum_probs=142.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEEEE
Q 028300           15 FKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVY   93 (211)
Q Consensus        15 ~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (211)
                      +||+++|++|+|||||+++|.++.+ ..+.++.+.++....+.+++..+.+.+||+||+..+...+..+++++|++++||
T Consensus         1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~   80 (161)
T cd04113           1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence            5899999999999999999999988 666777787777777788888899999999999999888999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHHHHHH
Q 028300           94 DVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLA  173 (211)
Q Consensus        94 d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~  173 (211)
                      |++++.++..+.. |+..+... ...++|+++|+||.|+.....+..++...++...+++++++||+++.|++++|+++.
T Consensus        81 d~~~~~s~~~~~~-~~~~~~~~-~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~~~  158 (161)
T cd04113          81 DITNRTSFEALPT-WLSDARAL-ASPNIVVILVGNKSDLADQREVTFLEASRFAQENGLLFLETSALTGENVEEAFLKCA  158 (161)
T ss_pred             ECCCHHHHHHHHH-HHHHHHHh-CCCCCeEEEEEEchhcchhccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence            9999999999988 77776544 356899999999999987777788888888888899999999999999999999998


Q ss_pred             HH
Q 028300          174 LK  175 (211)
Q Consensus       174 ~~  175 (211)
                      +.
T Consensus       159 ~~  160 (161)
T cd04113         159 RS  160 (161)
T ss_pred             Hh
Confidence            75

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>cd01864 Rab19 Rab19 subfamily

Probab=100.00  E-value=1.3e-32  Score=194.48  Aligned_cols=161  Identities=49%  Similarity=0.815  Sum_probs=140.9

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEE
Q 028300           13 LSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIIL   91 (211)
Q Consensus        13 ~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   91 (211)
                      ..+||+++|++|+|||||++++..+.+ ..+.++.+.++....+.+.+..+.+.+||+||+..+...+..+++.+|++++
T Consensus         2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll   81 (165)
T cd01864           2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII   81 (165)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence            468999999999999999999998887 4566777777777777788888899999999999999889999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCC-eEEEeeccCCCcHHHHHH
Q 028300           92 VYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGS-LFLECSAKTRENVEQCFE  170 (211)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~gv~~l~~  170 (211)
                      |||++++.+++.+.. |+..+... ...++|+++|+||+|+...+++...+...+++..+. .++++||++|.|++++|+
T Consensus        82 v~d~~~~~s~~~~~~-~~~~i~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~  159 (165)
T cd01864          82 AYDITRRSSFESVPH-WIEEVEKY-GASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLETSAKESQNVEEAFL  159 (165)
T ss_pred             EEECcCHHHHHhHHH-HHHHHHHh-CCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEEECCCCCCHHHHHH
Confidence            999999999999887 88877654 356899999999999987777777788888888775 689999999999999999


Q ss_pred             HHHHH
Q 028300          171 QLALK  175 (211)
Q Consensus       171 ~i~~~  175 (211)
                      ++.+.
T Consensus       160 ~l~~~  164 (165)
T cd01864         160 LMATE  164 (165)
T ss_pred             HHHHh
Confidence            99865

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=100.00  E-value=9e-33  Score=195.11  Aligned_cols=162  Identities=41%  Similarity=0.669  Sum_probs=137.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEEEE
Q 028300           15 FKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVY   93 (211)
Q Consensus        15 ~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (211)
                      +||+++|++|||||||++++.+..+ ..+.++.. +........++..+.+.+||+||++++..++..+++.+|++++||
T Consensus         1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~   79 (164)
T smart00173        1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIE-DSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVY   79 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEE
Confidence            5899999999999999999999887 44445444 333455667778899999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHHHHHH
Q 028300           94 DVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLA  173 (211)
Q Consensus        94 d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~  173 (211)
                      |++++++++.+.. |...+.......++|+++|+||+|+.+.+.+..++...++...+++|+++||+++.|++++|++|+
T Consensus        80 d~~~~~s~~~~~~-~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~  158 (164)
T smart00173       80 SITDRQSFEEIKK-FREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDLV  158 (164)
T ss_pred             ECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHHHcCCEEEEeecCCCCCHHHHHHHHH
Confidence            9999999999988 666655443456899999999999977677777778888888889999999999999999999999


Q ss_pred             HHHHh
Q 028300          174 LKIME  178 (211)
Q Consensus       174 ~~~~~  178 (211)
                      +.+.+
T Consensus       159 ~~~~~  163 (164)
T smart00173      159 REIRK  163 (164)
T ss_pred             HHHhh
Confidence            87653

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>cd04106 Rab23_lke Rab23-like subfamily

Probab=100.00  E-value=8.3e-33  Score=194.87  Aligned_cols=158  Identities=39%  Similarity=0.627  Sum_probs=139.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEEC--CEEEEEEEEeCCChhhhccchhhhccCCcEEEE
Q 028300           15 FKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVA--GKRLKLTIWDTAGQERFRTLTSSYYRGAQGIIL   91 (211)
Q Consensus        15 ~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   91 (211)
                      +||+++|.+|+|||||++++..+.+ ..+.++.+.++....+.+.  +..+.+.+||+||++++..++..+++++|++++
T Consensus         1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~   80 (162)
T cd04106           1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL   80 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence            5899999999999999999999888 5667788877766666666  678899999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHHHH
Q 028300           92 VYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQ  171 (211)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~  171 (211)
                      |||++++++++.+.. |...+...  ..++|+++|+||+|+.....+..++...++..++++++++|++++.|++++|++
T Consensus        81 v~d~~~~~s~~~l~~-~~~~~~~~--~~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~  157 (162)
T cd04106          81 VFSTTDRESFEAIES-WKEKVEAE--CGDIPMVLVQTKIDLLDQAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELFEY  157 (162)
T ss_pred             EEECCCHHHHHHHHH-HHHHHHHh--CCCCCEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHH
Confidence            999999999999887 88777643  458999999999999877777878888888889999999999999999999999


Q ss_pred             HHHH
Q 028300          172 LALK  175 (211)
Q Consensus       172 i~~~  175 (211)
                      |.+.
T Consensus       158 l~~~  161 (162)
T cd04106         158 LAEK  161 (162)
T ss_pred             HHHh
Confidence            8754

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>cd04176 Rap2 Rap2 subgroup

Probab=100.00  E-value=9.5e-33  Score=194.82  Aligned_cols=161  Identities=37%  Similarity=0.612  Sum_probs=136.7

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEEE
Q 028300           14 SFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILV   92 (211)
Q Consensus        14 ~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (211)
                      ++||+++|.+|+|||||++++..+.+ ..+.++.+ .+....+.+++....+.+||++|++.+..++..+++++|++++|
T Consensus         1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v   79 (163)
T cd04176           1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVV   79 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchh-heEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEE
Confidence            47999999999999999999999988 44445544 44455667788888999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHHHHH
Q 028300           93 YDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQL  172 (211)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i  172 (211)
                      ||++++.++.++.. |...+.......++|+++|+||+|+.+...+...+...++...+++++++||+++.|++++|.++
T Consensus        80 ~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l  158 (163)
T cd04176          80 YSLVNQQTFQDIKP-MRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEI  158 (163)
T ss_pred             EECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHH
Confidence            99999999999988 76666554344689999999999997666666666777777778899999999999999999999


Q ss_pred             HHHH
Q 028300          173 ALKI  176 (211)
Q Consensus       173 ~~~~  176 (211)
                      .+.+
T Consensus       159 ~~~l  162 (163)
T cd04176         159 VRQM  162 (163)
T ss_pred             HHhc
Confidence            8754

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>smart00175 RAB Rab subfamily of small GTPases

Probab=100.00  E-value=3.6e-32  Score=191.90  Aligned_cols=162  Identities=60%  Similarity=0.954  Sum_probs=143.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEEEE
Q 028300           15 FKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVY   93 (211)
Q Consensus        15 ~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (211)
                      +||+++|++|+|||||++++.+..+ ....++.+.++....+...+..+.+.+||+||+..+...+..+++.+|++++||
T Consensus         1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~   80 (164)
T smart00175        1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence            5899999999999999999998887 556677777777777788888889999999999999988999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHHHHHH
Q 028300           94 DVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLA  173 (211)
Q Consensus        94 d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~  173 (211)
                      |++++.+++.+.. |+..+..+ ...++|+++|+||+|+.....+..+....+....+++++++|+.++.|++++|++|.
T Consensus        81 d~~~~~s~~~~~~-~l~~~~~~-~~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~l~~~i~  158 (164)
T smart00175       81 DITNRESFENLKN-WLKELREY-ADPNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELA  158 (164)
T ss_pred             ECCCHHHHHHHHH-HHHHHHHh-CCCCCeEEEEEEchhcccccCCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence            9999999999988 88887665 236899999999999977667777778888888899999999999999999999999


Q ss_pred             HHHHh
Q 028300          174 LKIME  178 (211)
Q Consensus       174 ~~~~~  178 (211)
                      +.+.+
T Consensus       159 ~~~~~  163 (164)
T smart00175      159 REILK  163 (164)
T ss_pred             HHHhh
Confidence            98754

Rab GTPases are implicated in vesicle trafficking.

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=100.00  E-value=3e-32  Score=193.57  Aligned_cols=162  Identities=39%  Similarity=0.688  Sum_probs=143.6

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhc-cchhhhccCCcEEEE
Q 028300           14 SFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFR-TLTSSYYRGAQGIIL   91 (211)
Q Consensus        14 ~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~-~~~~~~~~~~d~~i~   91 (211)
                      .+||+++|++|+|||||++++....+ ..+.++.+.++....+.+.+..+.+.+||++|++++. .++..+++++|++++
T Consensus         2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~   81 (170)
T cd04115           2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF   81 (170)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence            58999999999999999999999888 4567777777777778888888999999999998886 567888999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccC---CCcHHHH
Q 028300           92 VYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKT---RENVEQC  168 (211)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~---~~gv~~l  168 (211)
                      |||++++.++..+.. |+..+.......++|+++|+||+|+...+.+...+...++...+++|+++||++   +.+++++
T Consensus        82 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~~~~i~~~  160 (170)
T cd04115          82 VYDVTNMASFHSLPS-WIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAI  160 (170)
T ss_pred             EEECCCHHHHHhHHH-HHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHH
Confidence            999999999999988 888877664557899999999999987777888888888888889999999999   8999999


Q ss_pred             HHHHHHHH
Q 028300          169 FEQLALKI  176 (211)
Q Consensus       169 ~~~i~~~~  176 (211)
                      |.++++.+
T Consensus       161 f~~l~~~~  168 (170)
T cd04115         161 FMTLAHKL  168 (170)
T ss_pred             HHHHHHHh
Confidence            99998766

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=100.00  E-value=2.8e-32  Score=192.01  Aligned_cols=160  Identities=34%  Similarity=0.617  Sum_probs=134.8

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEEE
Q 028300           14 SFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILV   92 (211)
Q Consensus        14 ~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (211)
                      ++||+++|++|||||||+++|.++.+ ..+.++.+..+ ...+.+++....+.+||++|++++..++..+++.+|++++|
T Consensus         1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v   79 (162)
T cd04138           1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV   79 (162)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheE-EEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEE
Confidence            47999999999999999999999887 55666665444 44566777788899999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHHHHH
Q 028300           93 YDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQL  172 (211)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i  172 (211)
                      ||+++..+++++.. |...+.......++|+++|+||+|+.. ..+...+...++...+++++++||+++.|++++|+++
T Consensus        80 ~~~~~~~s~~~~~~-~~~~i~~~~~~~~~piivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  157 (162)
T cd04138          80 FAINSRKSFEDIHT-YREQIKRVKDSDDVPMVLVGNKCDLAA-RTVSSRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTL  157 (162)
T ss_pred             EECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECccccc-ceecHHHHHHHHHHhCCeEEEecCCCCCCHHHHHHHH
Confidence            99999999999887 666555443456899999999999865 4456667777777788999999999999999999999


Q ss_pred             HHHH
Q 028300          173 ALKI  176 (211)
Q Consensus       173 ~~~~  176 (211)
                      ++.+
T Consensus       158 ~~~~  161 (162)
T cd04138         158 VREI  161 (162)
T ss_pred             HHHh
Confidence            8754

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=7.7e-33  Score=183.16  Aligned_cols=170  Identities=49%  Similarity=0.789  Sum_probs=157.7

Q ss_pred             CCCCceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCC
Q 028300            8 SNSYDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGA   86 (211)
Q Consensus         8 ~~~~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~   86 (211)
                      +.+++.-+|++++|+.|+|||.|++++....| +....+.|.++.++.+...+..+++++|||+|+++|++..+.+++.+
T Consensus         3 sEtYDyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGA   82 (214)
T KOG0086|consen    3 SETYDYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGA   82 (214)
T ss_pred             chhhhhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccc
Confidence            34677889999999999999999999999999 78889999999999999999999999999999999999999999999


Q ss_pred             cEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHH
Q 028300           87 QGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVE  166 (211)
Q Consensus        87 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~  166 (211)
                      -+.++|||+++.++|+.+.. |+.-.+.. ..+++-+++++||.|+.+.+++...++..|+.+..+.+.++|+++|++++
T Consensus        83 AGAlLVYD~TsrdsfnaLtn-WL~DaR~l-As~nIvviL~GnKkDL~~~R~VtflEAs~FaqEnel~flETSa~TGeNVE  160 (214)
T KOG0086|consen   83 AGALLVYDITSRDSFNALTN-WLTDARTL-ASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVE  160 (214)
T ss_pred             cceEEEEeccchhhHHHHHH-HHHHHHhh-CCCcEEEEEeCChhhcChhhhhhHHHHHhhhcccceeeeeecccccccHH
Confidence            99999999999999999999 99888866 67889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhc
Q 028300          167 QCFEQLALKIMEV  179 (211)
Q Consensus       167 ~l~~~i~~~~~~~  179 (211)
                      +.|-.....++..
T Consensus       161 EaFl~c~~tIl~k  173 (214)
T KOG0086|consen  161 EAFLKCARTILNK  173 (214)
T ss_pred             HHHHHHHHHHHHH
Confidence            9997766665544

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=100.00  E-value=3.7e-32  Score=192.28  Aligned_cols=161  Identities=32%  Similarity=0.585  Sum_probs=137.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEEEE
Q 028300           15 FKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVY   93 (211)
Q Consensus        15 ~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (211)
                      +||+++|++|||||||+++++.+.+ ..+.++.+.++....+...+..+.+.+||++|++.+..++..++..+|++|+||
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (166)
T cd00877           1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF   80 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence            5899999999999999999998887 567788888877777777788899999999999999888889999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHHHHHH
Q 028300           94 DVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLA  173 (211)
Q Consensus        94 d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~  173 (211)
                      |+++++++..+.. |...+...  ..++|+++|+||+|+.. ..+.. +...+....+.+++++||++|.|++++|++|.
T Consensus        81 d~~~~~s~~~~~~-~~~~i~~~--~~~~piiiv~nK~Dl~~-~~~~~-~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~  155 (166)
T cd00877          81 DVTSRVTYKNVPN-WHRDLVRV--CGNIPIVLCGNKVDIKD-RKVKA-KQITFHRKKNLQYYEISAKSNYNFEKPFLWLA  155 (166)
T ss_pred             ECCCHHHHHHHHH-HHHHHHHh--CCCCcEEEEEEchhccc-ccCCH-HHHHHHHHcCCEEEEEeCCCCCChHHHHHHHH
Confidence            9999999999987 88887765  23899999999999863 33333 33455666778999999999999999999999


Q ss_pred             HHHHhcc
Q 028300          174 LKIMEVP  180 (211)
Q Consensus       174 ~~~~~~~  180 (211)
                      +.+.+..
T Consensus       156 ~~~~~~~  162 (166)
T cd00877         156 RKLLGNP  162 (166)
T ss_pred             HHHHhcc
Confidence            9887644

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>cd01871 Rac1_like Rac1-like subfamily

Probab=100.00  E-value=3.6e-32  Score=193.63  Aligned_cols=158  Identities=30%  Similarity=0.563  Sum_probs=135.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEEEE
Q 028300           15 FKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVY   93 (211)
Q Consensus        15 ~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (211)
                      +||+++|.+|||||||+.++..+.+ ..+.++.+..+ ...+.+++..+.+.+||++|++.+..++..+++++|++|+||
T Consensus         2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~   80 (174)
T cd01871           2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICF   80 (174)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeee-EEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEE
Confidence            7999999999999999999999888 56677765433 445567888899999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCC------------cccCHHHHHHHHHHcCC-eEEEeecc
Q 028300           94 DVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSE------------RVVSREEGIALAKEHGS-LFLECSAK  160 (211)
Q Consensus        94 d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~------------~~v~~~~~~~~~~~~~~-~~~~~Sa~  160 (211)
                      |++++++|.++...|...+...  ..+.|+++|+||+|+.+.            ..+..+++..++..++. +|+++||+
T Consensus        81 d~~~~~sf~~~~~~~~~~~~~~--~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~  158 (174)
T cd01871          81 SLVSPASFENVRAKWYPEVRHH--CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL  158 (174)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeccc
Confidence            9999999999976688877654  357999999999998542            24677888888888884 89999999


Q ss_pred             CCCcHHHHHHHHHHH
Q 028300          161 TRENVEQCFEQLALK  175 (211)
Q Consensus       161 ~~~gv~~l~~~i~~~  175 (211)
                      +|.|++++|+.+.+.
T Consensus       159 ~~~~i~~~f~~l~~~  173 (174)
T cd01871         159 TQKGLKTVFDEAIRA  173 (174)
T ss_pred             ccCCHHHHHHHHHHh
Confidence            999999999998764

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti

>cd04116 Rab9 Rab9 subfamily

Probab=100.00  E-value=6e-32  Score=192.02  Aligned_cols=162  Identities=42%  Similarity=0.687  Sum_probs=139.8

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEE
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGII   90 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (211)
                      +..+||+++|++|+|||||++++..+.+ ..+.++.+.++....+.+++..+.+.+||+||++++..++..+++.+|+++
T Consensus         3 ~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i   82 (170)
T cd04116           3 SSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCL   82 (170)
T ss_pred             ceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEE
Confidence            4679999999999999999999999888 456677787777777788889999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHhhhhcc---CCCccEEEEeecCCCCCCcccCHHHHHHHHHHcC-CeEEEeeccCCCcHH
Q 028300           91 LVYDVTRRETFTNLSDVWAKEVDLYST---NQDCVKMLVGNKVDRDSERVVSREEGIALAKEHG-SLFLECSAKTRENVE  166 (211)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~gv~  166 (211)
                      +|||++++++++.+.. |...+.....   ..++|+++|+||+|+. .+.+..++..+++..++ .+++++||+++.|++
T Consensus        83 ~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~  160 (170)
T cd04116          83 LTFAVDDSQSFQNLSN-WKKEFIYYADVKEPESFPFVVLGNKNDIP-ERQVSTEEAQAWCRENGDYPYFETSAKDATNVA  160 (170)
T ss_pred             EEEECCCHHHHHhHHH-HHHHHHHhcccccCCCCcEEEEEECcccc-ccccCHHHHHHHHHHCCCCeEEEEECCCCCCHH
Confidence            9999999999999887 7766544322   3578999999999986 45667778888888877 489999999999999


Q ss_pred             HHHHHHHHH
Q 028300          167 QCFEQLALK  175 (211)
Q Consensus       167 ~l~~~i~~~  175 (211)
                      ++|+++++.
T Consensus       161 ~~~~~~~~~  169 (170)
T cd04116         161 AAFEEAVRR  169 (170)
T ss_pred             HHHHHHHhh
Confidence            999999875

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=100.00  E-value=4.6e-32  Score=191.42  Aligned_cols=161  Identities=37%  Similarity=0.615  Sum_probs=136.4

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEEE
Q 028300           14 SFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILV   92 (211)
Q Consensus        14 ~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (211)
                      .+||+++|++|+|||||++++.+..+ ..+.++.+..+ .....+.+..+.+.+||+||+.++..++..+++.+|++++|
T Consensus         2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv   80 (164)
T cd04145           2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSY-TKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLV   80 (164)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceE-EEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEE
Confidence            48999999999999999999998887 45555555333 34456777888999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHHHHH
Q 028300           93 YDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQL  172 (211)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i  172 (211)
                      ||+++..+++.+.. |...+.......+.|+++|+||+|+.....+...+...++...+++++++||+++.|++++|++|
T Consensus        81 ~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l  159 (164)
T cd04145          81 FSVTDRGSFEEVDK-FHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELARKLKIPYIETSAKDRLNVDKAFHDL  159 (164)
T ss_pred             EECCCHHHHHHHHH-HHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHHHHcCCcEEEeeCCCCCCHHHHHHHH
Confidence            99999999999988 66665544345689999999999997766677777778888888999999999999999999999


Q ss_pred             HHHH
Q 028300          173 ALKI  176 (211)
Q Consensus       173 ~~~~  176 (211)
                      ++.+
T Consensus       160 ~~~~  163 (164)
T cd04145         160 VRVI  163 (164)
T ss_pred             HHhh
Confidence            8764

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>cd04124 RabL2 RabL2 subfamily

Probab=100.00  E-value=8.3e-32  Score=189.61  Aligned_cols=159  Identities=35%  Similarity=0.547  Sum_probs=134.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEEEE
Q 028300           15 FKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVY   93 (211)
Q Consensus        15 ~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (211)
                      +||+++|.+|||||||++++..+.+ +...++.+.+........++..+.+.+||++|++.+..++..+++++|++++||
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (161)
T cd04124           1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence            5899999999999999999999888 455556666666666677788899999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHHHHHH
Q 028300           94 DVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLA  173 (211)
Q Consensus        94 d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~  173 (211)
                      |++++.++.++.. |...+...  ..++|+++|+||+|+...   ...+...++...+++++++||+++.|++++|+.+.
T Consensus        81 d~~~~~s~~~~~~-~~~~i~~~--~~~~p~ivv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~  154 (161)
T cd04124          81 DVTRKITYKNLSK-WYEELREY--RPEIPCIVVANKIDLDPS---VTQKKFNFAEKHNLPLYYVSAADGTNVVKLFQDAI  154 (161)
T ss_pred             ECCCHHHHHHHHH-HHHHHHHh--CCCCcEEEEEECccCchh---HHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence            9999999999887 88777643  457899999999998432   12334556666788999999999999999999999


Q ss_pred             HHHHhc
Q 028300          174 LKIMEV  179 (211)
Q Consensus       174 ~~~~~~  179 (211)
                      +.+.++
T Consensus       155 ~~~~~~  160 (161)
T cd04124         155 KLAVSY  160 (161)
T ss_pred             HHHHhc
Confidence            887765

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>cd01860 Rab5_related Rab5-related subfamily

Probab=100.00  E-value=1.1e-31  Score=189.34  Aligned_cols=161  Identities=45%  Similarity=0.755  Sum_probs=143.2

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhhCCCC-CCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEEE
Q 028300           14 SFKILLIGDSGVGKSSLLVSFISSSVD-DLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILV   92 (211)
Q Consensus        14 ~~~I~v~G~~~~GKssli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (211)
                      ++||+++|++|+|||||++++.++.+. .+.++.+..+....+.+++..+.+.+||+||++++...+..+++.+|++++|
T Consensus         1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   80 (163)
T cd01860           1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV   80 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence            479999999999999999999999984 4778888878777888888899999999999999988888999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHHHHH
Q 028300           93 YDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQL  172 (211)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i  172 (211)
                      +|+++++++..+.. |+..+... .....|+++++||+|+.....+...+...+....+++++++||++|.|++++|++|
T Consensus        81 ~d~~~~~s~~~~~~-~~~~~~~~-~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l  158 (163)
T cd01860          81 YDITSEESFEKAKS-WVKELQRN-ASPNIIIALVGNKADLESKRQVSTEEAQEYADENGLLFFETSAKTGENVNELFTEI  158 (163)
T ss_pred             EECcCHHHHHHHHH-HHHHHHHh-CCCCCeEEEEEECccccccCcCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHH
Confidence            99999999999988 77777655 33689999999999987666677777888888888999999999999999999999


Q ss_pred             HHHH
Q 028300          173 ALKI  176 (211)
Q Consensus       173 ~~~~  176 (211)
                      ++.+
T Consensus       159 ~~~l  162 (163)
T cd01860         159 AKKL  162 (163)
T ss_pred             HHHh
Confidence            9875

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.3e-34  Score=191.56  Aligned_cols=172  Identities=38%  Similarity=0.665  Sum_probs=157.1

Q ss_pred             CCCceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEEC---------CEEEEEEEEeCCChhhhccc
Q 028300            9 NSYDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVA---------GKRLKLTIWDTAGQERFRTL   78 (211)
Q Consensus         9 ~~~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~---------~~~~~~~l~D~~g~~~~~~~   78 (211)
                      ..++.-++.+.+|++|+|||+|+.++..+.| .....+.|.++..+.+.+.         +..+.+++|||+|+++|+++
T Consensus         4 GdydylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSL   83 (219)
T KOG0081|consen    4 GDYDYLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSL   83 (219)
T ss_pred             ccHHHHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHH
Confidence            4456778899999999999999999999999 7788888888877766552         23578999999999999999


Q ss_pred             hhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEee
Q 028300           79 TSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECS  158 (211)
Q Consensus        79 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~S  158 (211)
                      ..++++.+.+++++||+++.+||.+++. |+..++.+....++.+++++||+|+++.+.|+.+++..++.++++|||++|
T Consensus        84 TTAFfRDAMGFlLiFDlT~eqSFLnvrn-WlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfETS  162 (219)
T KOG0081|consen   84 TTAFFRDAMGFLLIFDLTSEQSFLNVRN-WLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFETS  162 (219)
T ss_pred             HHHHHHhhccceEEEeccchHHHHHHHH-HHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeeec
Confidence            9999999999999999999999999999 999999988899999999999999999999999999999999999999999


Q ss_pred             ccCCCcHHHHHHHHHHHHHhccc
Q 028300          159 AKTRENVEQCFEQLALKIMEVPS  181 (211)
Q Consensus       159 a~~~~gv~~l~~~i~~~~~~~~~  181 (211)
                      |-++.+|++..+.++..++++..
T Consensus       163 A~tg~Nv~kave~LldlvM~Rie  185 (219)
T KOG0081|consen  163 ACTGTNVEKAVELLLDLVMKRIE  185 (219)
T ss_pred             cccCcCHHHHHHHHHHHHHHHHH
Confidence            99999999999999998887654

>cd04140 ARHI_like ARHI subfamily

Probab=100.00  E-value=8e-32  Score=190.47  Aligned_cols=158  Identities=32%  Similarity=0.493  Sum_probs=133.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEEEE
Q 028300           15 FKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVY   93 (211)
Q Consensus        15 ~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (211)
                      +||+++|++|||||||++++.++.+ ..+.++.+..+ ...+......+.+.+||++|++++..++...++.+|++++||
T Consensus         2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   80 (165)
T cd04140           2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY   80 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheE-EEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEE
Confidence            7999999999999999999999988 45556655444 344556677889999999999999888888999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHhhhhcc--CCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHHHH
Q 028300           94 DVTRRETFTNLSDVWAKEVDLYST--NQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQ  171 (211)
Q Consensus        94 d~~~~~s~~~~~~~~~~~~~~~~~--~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~  171 (211)
                      |+++.++++++.. |...+.....  ..++|+++|+||+|+.+.+.+...+...++..++++|+++||++|.|++++|++
T Consensus        81 d~~~~~s~~~~~~-~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~g~~v~~~f~~  159 (165)
T cd04140          81 SVTSKQSLEELKP-IYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEWNCAFMETSAKTNHNVQELFQE  159 (165)
T ss_pred             ECCCHHHHHHHHH-HHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHH
Confidence            9999999999988 6666554322  267999999999999776677777777788888889999999999999999999


Q ss_pred             HHH
Q 028300          172 LAL  174 (211)
Q Consensus       172 i~~  174 (211)
                      |++
T Consensus       160 l~~  162 (165)
T cd04140         160 LLN  162 (165)
T ss_pred             HHh
Confidence            875

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases

Probab=100.00  E-value=9.7e-32  Score=191.62  Aligned_cols=159  Identities=33%  Similarity=0.613  Sum_probs=135.2

Q ss_pred             EEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEEEEEC
Q 028300           17 ILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDV   95 (211)
Q Consensus        17 I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~   95 (211)
                      |+|+|++|||||||++++..+.+ ..+.++....+ ...+.+++..+.+.+||+||++.+..++..+++++|++|+|||+
T Consensus         1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~   79 (174)
T smart00174        1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENY-SADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSV   79 (174)
T ss_pred             CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeee-eEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEEC
Confidence            68999999999999999999988 44555555444 34566778889999999999999998899999999999999999


Q ss_pred             CChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCC------------cccCHHHHHHHHHHcCC-eEEEeeccCC
Q 028300           96 TRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSE------------RVVSREEGIALAKEHGS-LFLECSAKTR  162 (211)
Q Consensus        96 ~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~------------~~v~~~~~~~~~~~~~~-~~~~~Sa~~~  162 (211)
                      +++++++++...|...+...  ..++|+++|+||+|+...            ..+..++...++...+. +|+++||+++
T Consensus        80 ~~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~  157 (174)
T smart00174       80 DSPASFENVKEKWYPEVKHF--CPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQ  157 (174)
T ss_pred             CCHHHHHHHHHHHHHHHHhh--CCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCC
Confidence            99999999976688887765  358999999999998643            23667777888888886 8999999999


Q ss_pred             CcHHHHHHHHHHHHHh
Q 028300          163 ENVEQCFEQLALKIME  178 (211)
Q Consensus       163 ~gv~~l~~~i~~~~~~  178 (211)
                      .|++++|+.+++.+..
T Consensus       158 ~~v~~lf~~l~~~~~~  173 (174)
T smart00174      158 EGVREVFEEAIRAALN  173 (174)
T ss_pred             CCHHHHHHHHHHHhcC
Confidence            9999999999987753

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.

>cd01863 Rab18 Rab18 subfamily

Probab=100.00  E-value=2.2e-31  Score=187.44  Aligned_cols=159  Identities=69%  Similarity=1.085  Sum_probs=140.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEEEE
Q 028300           15 FKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVY   93 (211)
Q Consensus        15 ~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (211)
                      +||+++|++|+|||||+++|.+..+ ....++.+.++....+.+.+..+.+.+||+||+..+...+..+++.+|++++||
T Consensus         1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   80 (161)
T cd01863           1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence            5899999999999999999999888 457788888887777777888899999999999999888899999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHHHHHH
Q 028300           94 DVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLA  173 (211)
Q Consensus        94 d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~  173 (211)
                      |++++++++.+.. |...+..+....+.|+++|+||+|+. ......++...+....+++++++|+++|.|+++++++++
T Consensus        81 d~~~~~s~~~~~~-~~~~i~~~~~~~~~~~~iv~nK~D~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~~~  158 (161)
T cd01863          81 DVTRRDTFTNLET-WLNELETYSTNNDIVKMLVGNKIDKE-NREVTREEGLKFARKHNMLFIETSAKTRDGVQQAFEELV  158 (161)
T ss_pred             ECCCHHHHHhHHH-HHHHHHHhCCCCCCcEEEEEECCccc-ccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHH
Confidence            9999999999888 88888776566789999999999986 334566677788888899999999999999999999988


Q ss_pred             HH
Q 028300          174 LK  175 (211)
Q Consensus       174 ~~  175 (211)
                      +.
T Consensus       159 ~~  160 (161)
T cd01863         159 EK  160 (161)
T ss_pred             Hh
Confidence            75

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>cd01861 Rab6 Rab6 subfamily

Probab=100.00  E-value=2.6e-31  Score=187.06  Aligned_cols=159  Identities=40%  Similarity=0.701  Sum_probs=138.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEEEE
Q 028300           15 FKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVY   93 (211)
Q Consensus        15 ~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (211)
                      +||+++|++|||||||++++.+..+ ..+.++.+.++....+..++..+.+.+||+||+..+..++..+++.+|++++||
T Consensus         1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~   80 (161)
T cd01861           1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence            4899999999999999999999888 556777777777777777887889999999999999988999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHHHHHH
Q 028300           94 DVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLA  173 (211)
Q Consensus        94 d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~  173 (211)
                      |+++++++..+.. |...+... ...+.|+++++||+|+.+...+..++...+....+++++++|++++.|++++|++|.
T Consensus        81 d~~~~~s~~~~~~-~~~~~~~~-~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~  158 (161)
T cd01861          81 DITNRQSFDNTDK-WIDDVRDE-RGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNAMFIETSAKAGHNVKELFRKIA  158 (161)
T ss_pred             ECcCHHHHHHHHH-HHHHHHHh-CCCCCEEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHH
Confidence            9999999999887 77766543 234799999999999966666777777888888889999999999999999999998


Q ss_pred             HH
Q 028300          174 LK  175 (211)
Q Consensus       174 ~~  175 (211)
                      +.
T Consensus       159 ~~  160 (161)
T cd01861         159 SA  160 (161)
T ss_pred             Hh
Confidence            75

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>cd04142 RRP22 RRP22 subfamily

Probab=100.00  E-value=2e-31  Score=193.09  Aligned_cols=167  Identities=22%  Similarity=0.359  Sum_probs=133.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhcc--------chhhhccC
Q 028300           15 FKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRT--------LTSSYYRG   85 (211)
Q Consensus        15 ~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~--------~~~~~~~~   85 (211)
                      +||+|+|.+|||||||++++.++.+ ..+.|+.+.+.....+.+++..+.+.+||+||...+..        .....++.
T Consensus         1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~   80 (198)
T cd04142           1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN   80 (198)
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence            5899999999999999999999988 45667776666556667788889999999999654321        13345789


Q ss_pred             CcEEEEEEECCChhhHHHHHHHHHHHhhhhc--cCCCccEEEEeecCCCCCCcccCHHHHHHHHH-HcCCeEEEeeccCC
Q 028300           86 AQGIILVYDVTRRETFTNLSDVWAKEVDLYS--TNQDCVKMLVGNKVDRDSERVVSREEGIALAK-EHGSLFLECSAKTR  162 (211)
Q Consensus        86 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~-~~~~~~~~~Sa~~~  162 (211)
                      +|++|+|||++++++++.+.. |...+....  ...++|+++|+||+|+...+.+..++...++. .++++|+++||++|
T Consensus        81 ad~iilv~D~~~~~S~~~~~~-~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g  159 (198)
T cd04142          81 SRAFILVYDICSPDSFHYVKL-LRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYN  159 (198)
T ss_pred             CCEEEEEEECCCHHHHHHHHH-HHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEEEecCCCC
Confidence            999999999999999999988 666554432  24679999999999997666666666665544 56889999999999


Q ss_pred             CcHHHHHHHHHHHHHhccch
Q 028300          163 ENVEQCFEQLALKIMEVPSL  182 (211)
Q Consensus       163 ~gv~~l~~~i~~~~~~~~~~  182 (211)
                      .|++++|+.+++.+..+-+.
T Consensus       160 ~~v~~lf~~i~~~~~~~~~~  179 (198)
T cd04142         160 WHILLLFKELLISATTRGRS  179 (198)
T ss_pred             CCHHHHHHHHHHHhhccCCC
Confidence            99999999999988866544

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.

>cd04177 RSR1 RSR1 subgroup

Probab=100.00  E-value=3.2e-31  Score=187.95  Aligned_cols=162  Identities=36%  Similarity=0.645  Sum_probs=138.8

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEEE
Q 028300           14 SFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILV   92 (211)
Q Consensus        14 ~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (211)
                      ++||+++|.+|||||||++++..+.+ ..+.++.+..+ ...+...+..+.+.+||+||++.+..++..+++.+|++++|
T Consensus         1 ~~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv   79 (168)
T cd04177           1 DYKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSY-RKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLV   79 (168)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEE
Confidence            47999999999999999999999888 55566665443 45566777889999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcC-CeEEEeeccCCCcHHHHHHH
Q 028300           93 YDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHG-SLFLECSAKTRENVEQCFEQ  171 (211)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~gv~~l~~~  171 (211)
                      ||++++++++.... |...+.......+.|+++++||.|+.+.+.+..++...+++.++ ++++++||+++.|++++|.+
T Consensus        80 ~~~~~~~s~~~~~~-~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~~f~~  158 (168)
T cd04177          80 YSVTSEASLNELGE-LREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFID  158 (168)
T ss_pred             EECCCHHHHHHHHH-HHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHHHcCCceEEEeeCCCCCCHHHHHHH
Confidence            99999999999988 77766554345689999999999997777777777777777777 79999999999999999999


Q ss_pred             HHHHHH
Q 028300          172 LALKIM  177 (211)
Q Consensus       172 i~~~~~  177 (211)
                      +...+.
T Consensus       159 i~~~~~  164 (168)
T cd04177         159 LVRQII  164 (168)
T ss_pred             HHHHHh
Confidence            988664

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>cd01873 RhoBTB RhoBTB subfamily

Probab=100.00  E-value=2.8e-31  Score=191.75  Aligned_cols=158  Identities=25%  Similarity=0.406  Sum_probs=127.9

Q ss_pred             eeEEEEEcCCCCcHHHHHH-HHhhCCC------CCCCCccce-eeEEEE--------EEECCEEEEEEEEeCCChhhhcc
Q 028300           14 SFKILLIGDSGVGKSSLLV-SFISSSV------DDLSPTIGV-DFKIKL--------LTVAGKRLKLTIWDTAGQERFRT   77 (211)
Q Consensus        14 ~~~I~v~G~~~~GKssli~-~l~~~~~------~~~~~~~~~-~~~~~~--------~~~~~~~~~~~l~D~~g~~~~~~   77 (211)
                      .+||+++|..|||||||+. ++.+..+      ..+.||.+. +.....        ..+++..+.+.+|||+|+++  .
T Consensus         2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~   79 (195)
T cd01873           2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K   79 (195)
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence            4799999999999999996 5554433      345566642 222211        24577889999999999875  2


Q ss_pred             chhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCC-------------------Cccc
Q 028300           78 LTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDS-------------------ERVV  138 (211)
Q Consensus        78 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~-------------------~~~v  138 (211)
                      +...+++++|++|+|||+++++||+++...|...+...  ..+.|+++|+||+|+.+                   .+.+
T Consensus        80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~--~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V  157 (195)
T cd01873          80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHF--CPRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADIL  157 (195)
T ss_pred             hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHh--CCCCCEEEEEEchhccccccchhhhcccccccccccCCcc
Confidence            45568899999999999999999999986688887655  35789999999999864                   3678


Q ss_pred             CHHHHHHHHHHcCCeEEEeeccCCCcHHHHHHHHHHH
Q 028300          139 SREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALK  175 (211)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~  175 (211)
                      ..++++.+++.++++|++|||++|.||+++|+.+++.
T Consensus       158 ~~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~  194 (195)
T cd01873         158 PPETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA  194 (195)
T ss_pred             CHHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence            8899999999999999999999999999999998864

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.

>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=100.00  E-value=3e-31  Score=191.94  Aligned_cols=155  Identities=30%  Similarity=0.544  Sum_probs=136.6

Q ss_pred             EcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEEEEECCCh
Q 028300           20 IGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRR   98 (211)
Q Consensus        20 ~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~   98 (211)
                      +|.+|||||||+++++.+.+ ..+.++.+.++....+.+++..+.+.|||++|++.|..++..+++++|++|+|||+++.
T Consensus         1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~   80 (200)
T smart00176        1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR   80 (200)
T ss_pred             CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence            69999999999999998888 56788989888888888888899999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHHHHHHHHHHh
Q 028300           99 ETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIME  178 (211)
Q Consensus        99 ~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~~~~  178 (211)
                      .++..+.. |+..+...  ..++|+++|+||+|+.. +.+..+. ..++...++.|++|||++|.||+++|.+|.+.+..
T Consensus        81 ~S~~~i~~-w~~~i~~~--~~~~piilvgNK~Dl~~-~~v~~~~-~~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i~~  155 (200)
T smart00176       81 VTYKNVPN-WHRDLVRV--CENIPIVLCGNKVDVKD-RKVKAKS-ITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIG  155 (200)
T ss_pred             HHHHHHHH-HHHHHHHh--CCCCCEEEEEECccccc-ccCCHHH-HHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence            99999987 99988765  35899999999999854 3344443 35667788999999999999999999999998876


Q ss_pred             c
Q 028300          179 V  179 (211)
Q Consensus       179 ~  179 (211)
                      .
T Consensus       156 ~  156 (200)
T smart00176      156 D  156 (200)
T ss_pred             c
Confidence            5

Ran is involved in the active transport of proteins through nuclear pores.

>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=7.5e-32  Score=177.82  Aligned_cols=173  Identities=43%  Similarity=0.763  Sum_probs=158.9

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEE
Q 028300           11 YDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGI   89 (211)
Q Consensus        11 ~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~   89 (211)
                      +..-+||+++|..|+|||.|++++..+-| +....+.|.++..+++.+.++++++++|||+|+++|++....+++.++++
T Consensus         4 ykflfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahal   83 (213)
T KOG0095|consen    4 YKFLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHAL   83 (213)
T ss_pred             cceeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceE
Confidence            45678999999999999999999999999 56778999999999999999999999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHH
Q 028300           90 ILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCF  169 (211)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~  169 (211)
                      |+|||++-..+|.-+.+ |+.++..+ ...++-.++|+||+|+.+.++++....++|+.....-|.++||+...+++.+|
T Consensus        84 ilvydiscqpsfdclpe-wlreie~y-an~kvlkilvgnk~d~~drrevp~qigeefs~~qdmyfletsakea~nve~lf  161 (213)
T KOG0095|consen   84 ILVYDISCQPSFDCLPE-WLREIEQY-ANNKVLKILVGNKIDLADRREVPQQIGEEFSEAQDMYFLETSAKEADNVEKLF  161 (213)
T ss_pred             EEEEecccCcchhhhHH-HHHHHHHH-hhcceEEEeeccccchhhhhhhhHHHHHHHHHhhhhhhhhhcccchhhHHHHH
Confidence            99999999999999999 99999988 56678889999999999999999999999999888889999999999999999


Q ss_pred             HHHHHHHHhccchhcc
Q 028300          170 EQLALKIMEVPSLLEE  185 (211)
Q Consensus       170 ~~i~~~~~~~~~~~~~  185 (211)
                      ..+..++....+....
T Consensus       162 ~~~a~rli~~ar~~d~  177 (213)
T KOG0095|consen  162 LDLACRLISEARQNDL  177 (213)
T ss_pred             HHHHHHHHHHHHhccc
Confidence            9999888877655444

>cd04123 Rab21 Rab21 subfamily

Probab=100.00  E-value=6.3e-31  Score=185.11  Aligned_cols=160  Identities=39%  Similarity=0.709  Sum_probs=137.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEEEE
Q 028300           15 FKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVY   93 (211)
Q Consensus        15 ~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (211)
                      +||+++|++|+|||||++++.+..+ ....++.........+...+....+.+||+||+..+...+..+++.+|++++||
T Consensus         1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (162)
T cd04123           1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY   80 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence            5899999999999999999999887 444455555665666666777889999999999999888999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHHHHHH
Q 028300           94 DVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLA  173 (211)
Q Consensus        94 d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~  173 (211)
                      |+++.++++.+.. |...+... ...++|+++|+||+|+.....+..++...+....+.+++++|++++.|++++|+++.
T Consensus        81 d~~~~~s~~~~~~-~~~~i~~~-~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gi~~~~~~l~  158 (162)
T cd04123          81 DITDADSFQKVKK-WIKELKQM-RGNNISLVIVGNKIDLERQRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLA  158 (162)
T ss_pred             ECCCHHHHHHHHH-HHHHHHHh-CCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence            9999999999888 77777655 234899999999999987777777777788888899999999999999999999998


Q ss_pred             HHH
Q 028300          174 LKI  176 (211)
Q Consensus       174 ~~~  176 (211)
                      +.+
T Consensus       159 ~~~  161 (162)
T cd04123         159 KRM  161 (162)
T ss_pred             HHh
Confidence            765

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>cd01862 Rab7 Rab7 subfamily

Probab=100.00  E-value=8.1e-31  Score=186.43  Aligned_cols=165  Identities=40%  Similarity=0.691  Sum_probs=139.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEEEE
Q 028300           15 FKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVY   93 (211)
Q Consensus        15 ~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (211)
                      +||+++|++|+|||||++++.+..+ ....++.+.++....+...+..+.+.+||+||+..+..++..+++++|++|++|
T Consensus         1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   80 (172)
T cd01862           1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   80 (172)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence            5899999999999999999999887 455567777777777778888899999999999999989999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHhhhhcc---CCCccEEEEeecCCCCCCcccCHHHHHHHHHHcC-CeEEEeeccCCCcHHHHH
Q 028300           94 DVTRRETFTNLSDVWAKEVDLYST---NQDCVKMLVGNKVDRDSERVVSREEGIALAKEHG-SLFLECSAKTRENVEQCF  169 (211)
Q Consensus        94 d~~~~~s~~~~~~~~~~~~~~~~~---~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~gv~~l~  169 (211)
                      |++++.+++++.. |...+.....   ..++|+++|+||+|+..++.+..++...+....+ .+++++|++++.|++++|
T Consensus        81 d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~  159 (172)
T cd01862          81 DVTNPKSFESLDS-WRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQAF  159 (172)
T ss_pred             ECCCHHHHHHHHH-HHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHcCCceEEEEECCCCCCHHHHH
Confidence            9999999988876 6665433212   3479999999999997656666677777777776 789999999999999999


Q ss_pred             HHHHHHHHhcc
Q 028300          170 EQLALKIMEVP  180 (211)
Q Consensus       170 ~~i~~~~~~~~  180 (211)
                      ++|.+.+.+..
T Consensus       160 ~~i~~~~~~~~  170 (172)
T cd01862         160 ETIARKALEQE  170 (172)
T ss_pred             HHHHHHHHhcc
Confidence            99999887653

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>cd04148 RGK RGK subfamily

Probab=100.00  E-value=4.2e-31  Score=194.65  Aligned_cols=165  Identities=28%  Similarity=0.374  Sum_probs=137.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhhCCC--CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhcc-CCcEEEE
Q 028300           15 FKILLIGDSGVGKSSLLVSFISSSV--DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYR-GAQGIIL   91 (211)
Q Consensus        15 ~~I~v~G~~~~GKssli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~-~~d~~i~   91 (211)
                      +||+++|++|+|||||+++|..+.+  ..+.++.+.++....+.+++....+.+||++|++.+  ....++. .+|++++
T Consensus         1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~--~~~~~~~~~ad~iil   78 (221)
T cd04148           1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEMW--TEDSCMQYQGDAFVV   78 (221)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcchH--HHhHHhhcCCCEEEE
Confidence            5899999999999999999988877  345555554666677788888899999999998722  2344566 8999999


Q ss_pred             EEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHHHH
Q 028300           92 VYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQ  171 (211)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~  171 (211)
                      |||++++.+++.+.. |...+.......++|+++|+||+|+.+.+.+..++...++..++++|+++||+++.|++++|++
T Consensus        79 V~d~td~~S~~~~~~-~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~SA~~~~gv~~l~~~  157 (221)
T cd04148          79 VYSVTDRSSFERASE-LRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACAVVFDCKFIETSAGLQHNVDELLEG  157 (221)
T ss_pred             EEECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH
Confidence            999999999999988 7777765534468999999999999877778877778888888899999999999999999999


Q ss_pred             HHHHHHhccch
Q 028300          172 LALKIMEVPSL  182 (211)
Q Consensus       172 i~~~~~~~~~~  182 (211)
                      +++.+......
T Consensus       158 l~~~~~~~~~~  168 (221)
T cd04148         158 IVRQIRLRRDS  168 (221)
T ss_pred             HHHHHHhhhcc
Confidence            99988754433

The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=100.00  E-value=5.4e-31  Score=186.01  Aligned_cols=159  Identities=31%  Similarity=0.510  Sum_probs=135.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhhC--CC-CCCCCccceeeEEEEEEEC-CEEEEEEEEeCCChhhhccchhhhccCCcEEE
Q 028300           15 FKILLIGDSGVGKSSLLVSFISS--SV-DDLSPTIGVDFKIKLLTVA-GKRLKLTIWDTAGQERFRTLTSSYYRGAQGII   90 (211)
Q Consensus        15 ~~I~v~G~~~~GKssli~~l~~~--~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (211)
                      +||+++|++|||||||++++...  .+ ..+.++.+.++....+... +..+.+.+||+||+..+..++..+++.+|+++
T Consensus         1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii   80 (164)
T cd04101           1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence            58999999999999999999865  45 6677788877766666664 56789999999999999888999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHHH
Q 028300           91 LVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFE  170 (211)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~  170 (211)
                      +|||++++++++++.. |+..+...  ..++|+++|+||+|+.+...+...+...+...++.+++++||+++.|++++|+
T Consensus        81 ~v~d~~~~~s~~~~~~-~~~~~~~~--~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  157 (164)
T cd04101          81 LVYDVSNKASFENCSR-WVNKVRTA--SKHMPGVLVGNKMDLADKAEVTDAQAQAFAQANQLKFFKTSALRGVGYEEPFE  157 (164)
T ss_pred             EEEECcCHHHHHHHHH-HHHHHHHh--CCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEeCCCCCChHHHHH
Confidence            9999999999998877 88777655  25799999999999977766776666667777788999999999999999999


Q ss_pred             HHHHHH
Q 028300          171 QLALKI  176 (211)
Q Consensus       171 ~i~~~~  176 (211)
                      ++.+.+
T Consensus       158 ~l~~~~  163 (164)
T cd04101         158 SLARAF  163 (164)
T ss_pred             HHHHHh
Confidence            998865

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>cd04130 Wrch_1 Wrch-1 subfamily

Probab=100.00  E-value=7e-31  Score=187.04  Aligned_cols=157  Identities=34%  Similarity=0.584  Sum_probs=133.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEEEE
Q 028300           15 FKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVY   93 (211)
Q Consensus        15 ~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (211)
                      +||+++|++|+|||||++++..+.+ ..+.++. .+.....+.+++..+.+.+||+||+..+..++..+++++|++++||
T Consensus         1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~   79 (173)
T cd04130           1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTA-FDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCF   79 (173)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCce-eeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEE
Confidence            5899999999999999999998888 4455544 4444556777788899999999999999998999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCC------------CcccCHHHHHHHHHHcCC-eEEEeecc
Q 028300           94 DVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDS------------ERVVSREEGIALAKEHGS-LFLECSAK  160 (211)
Q Consensus        94 d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~------------~~~v~~~~~~~~~~~~~~-~~~~~Sa~  160 (211)
                      |++++.+++.+...|...+...  ..+.|+++|+||+|+..            .+.+..+++..+++..+. +|+++||+
T Consensus        80 d~~~~~sf~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~  157 (173)
T cd04130          80 SVVNPSSFQNISEKWIPEIRKH--NPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSAL  157 (173)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCC
Confidence            9999999999876588777643  35799999999999853            346677788888888887 89999999


Q ss_pred             CCCcHHHHHHHHHH
Q 028300          161 TRENVEQCFEQLAL  174 (211)
Q Consensus       161 ~~~gv~~l~~~i~~  174 (211)
                      ++.|++++|+.++-
T Consensus       158 ~~~~v~~lf~~~~~  171 (173)
T cd04130         158 TQKNLKEVFDTAIL  171 (173)
T ss_pred             CCCCHHHHHHHHHh
Confidence            99999999998764

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,

>cd04103 Centaurin_gamma Centaurin gamma

Probab=100.00  E-value=5.7e-31  Score=184.47  Aligned_cols=154  Identities=23%  Similarity=0.360  Sum_probs=126.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEEEEE
Q 028300           15 FKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYD   94 (211)
Q Consensus        15 ~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d   94 (211)
                      +||+++|++|+|||||+.++..+.|....++.+..+ ...+.+++..+.+.+||++|++.     ..+++.+|++++|||
T Consensus         1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~~~~-~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~d   74 (158)
T cd04103           1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPEGGRF-KKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVFS   74 (158)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCCccce-EEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEEE
Confidence            589999999999999999999888844333333333 35677788888999999999864     245678999999999


Q ss_pred             CCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCC--CCcccCHHHHHHHHHHc-CCeEEEeeccCCCcHHHHHHH
Q 028300           95 VTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRD--SERVVSREEGIALAKEH-GSLFLECSAKTRENVEQCFEQ  171 (211)
Q Consensus        95 ~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~--~~~~v~~~~~~~~~~~~-~~~~~~~Sa~~~~gv~~l~~~  171 (211)
                      ++++++|+++.. |...+.......++|+++|+||.|+.  ..+.+..++..++++.. +++|++|||+++.||+++|.+
T Consensus        75 ~~~~~sf~~~~~-~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~  153 (158)
T cd04103          75 LENEASFQTVYN-LYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQE  153 (158)
T ss_pred             CCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHH
Confidence            999999999987 77777655334678999999999984  35677888888888776 589999999999999999999


Q ss_pred             HHHH
Q 028300          172 LALK  175 (211)
Q Consensus       172 i~~~  175 (211)
                      +.+.
T Consensus       154 ~~~~  157 (158)
T cd04103         154 AAQK  157 (158)
T ss_pred             HHhh
Confidence            8764

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.

>cd04135 Tc10 TC10 subfamily

Probab=100.00  E-value=8.6e-31  Score=186.72  Aligned_cols=159  Identities=31%  Similarity=0.594  Sum_probs=134.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEEEE
Q 028300           15 FKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVY   93 (211)
Q Consensus        15 ~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (211)
                      +||+++|++|+|||||++++..+.+ ..+.++....+ ...+.+++..+.+.+||++|+..+...+...++.+|++++||
T Consensus         1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   79 (174)
T cd04135           1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICF   79 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-EEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEE
Confidence            5899999999999999999999988 45555554333 345677888889999999999999988999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCC------------cccCHHHHHHHHHHcCC-eEEEeecc
Q 028300           94 DVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSE------------RVVSREEGIALAKEHGS-LFLECSAK  160 (211)
Q Consensus        94 d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~------------~~v~~~~~~~~~~~~~~-~~~~~Sa~  160 (211)
                      |++++.+++.+...|...+...  ..+.|+++|+||+|+.+.            ..+..+++..+++..+. +|+++||+
T Consensus        80 ~~~~~~s~~~~~~~~~~~l~~~--~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~  157 (174)
T cd04135          80 SVVNPASFQNVKEEWVPELKEY--APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSAL  157 (174)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCC
Confidence            9999999999987688887654  568999999999998543            24666777888888885 79999999


Q ss_pred             CCCcHHHHHHHHHHHH
Q 028300          161 TRENVEQCFEQLALKI  176 (211)
Q Consensus       161 ~~~gv~~l~~~i~~~~  176 (211)
                      +|.|++++|+.+++.+
T Consensus       158 ~~~gi~~~f~~~~~~~  173 (174)
T cd04135         158 TQKGLKTVFDEAILAI  173 (174)
T ss_pred             cCCCHHHHHHHHHHHh
Confidence            9999999999998865

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=99.98  E-value=1.8e-30  Score=183.24  Aligned_cols=161  Identities=35%  Similarity=0.611  Sum_probs=134.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEEEE
Q 028300           15 FKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVY   93 (211)
Q Consensus        15 ~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (211)
                      +||+++|++|||||||++++....+ ..+.++.+.. .......++..+.+.+||+||+..+...+..+++.+|++++||
T Consensus         1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   79 (164)
T cd04139           1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADS-YRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVF   79 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhh-EEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEE
Confidence            5899999999999999999999887 4444444433 3345567788899999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHHHHHH
Q 028300           94 DVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLA  173 (211)
Q Consensus        94 d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~  173 (211)
                      |++++.++.++.. |...+.......++|+++|+||+|+.........+...+...++++++++||+++.|++++|+++.
T Consensus        80 d~~~~~s~~~~~~-~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  158 (164)
T cd04139          80 SITDMESFTATAE-FREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWGVPYVETSAKTRQNVEKAFYDLV  158 (164)
T ss_pred             ECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEeeCCCCCCHHHHHHHHH
Confidence            9999999999988 544444332456899999999999976555666677777788889999999999999999999999


Q ss_pred             HHHH
Q 028300          174 LKIM  177 (211)
Q Consensus       174 ~~~~  177 (211)
                      +.+.
T Consensus       159 ~~~~  162 (164)
T cd04139         159 REIR  162 (164)
T ss_pred             HHHH
Confidence            8775

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>cd04143 Rhes_like Rhes_like subfamily

Probab=99.98  E-value=9.6e-31  Score=195.10  Aligned_cols=161  Identities=28%  Similarity=0.474  Sum_probs=134.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEEEE
Q 028300           15 FKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVY   93 (211)
Q Consensus        15 ~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (211)
                      +||+++|.+|||||||+++|+.+.+ ..+.++.+ ++....+.+.+..+.+.|||++|+..|..++..++..+|++|+||
T Consensus         1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVf   79 (247)
T cd04143           1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVF   79 (247)
T ss_pred             CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEE
Confidence            5899999999999999999999988 45666665 445566778888899999999999988888888889999999999


Q ss_pred             ECCChhhHHHHHHHHHHHhhhhc--------cCCCccEEEEeecCCCCCCcccCHHHHHHHHHH-cCCeEEEeeccCCCc
Q 028300           94 DVTRRETFTNLSDVWAKEVDLYS--------TNQDCVKMLVGNKVDRDSERVVSREEGIALAKE-HGSLFLECSAKTREN  164 (211)
Q Consensus        94 d~~~~~s~~~~~~~~~~~~~~~~--------~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~-~~~~~~~~Sa~~~~g  164 (211)
                      |+++.++|+++.. |...+....        ...++|+++|+||+|+...+.+..+++.+++.. .++.|+++||+++.|
T Consensus        80 dv~~~~Sf~~i~~-~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~~~~~evSAktg~g  158 (247)
T cd04143          80 SLDNRESFEEVCR-LREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSN  158 (247)
T ss_pred             eCCCHHHHHHHHH-HHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhcCCCEEEEEeCCCCCC
Confidence            9999999999987 666554321        235799999999999976667777777776653 467899999999999


Q ss_pred             HHHHHHHHHHHHH
Q 028300          165 VEQCFEQLALKIM  177 (211)
Q Consensus       165 v~~l~~~i~~~~~  177 (211)
                      ++++|++|.+.+.
T Consensus       159 I~elf~~L~~~~~  171 (247)
T cd04143         159 LDEMFRALFSLAK  171 (247)
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999998653

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=99.98  E-value=7.2e-31  Score=185.58  Aligned_cols=160  Identities=35%  Similarity=0.547  Sum_probs=133.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhh-hccchhhhccCCcEEEEEE
Q 028300           16 KILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER-FRTLTSSYYRGAQGIILVY   93 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-~~~~~~~~~~~~d~~i~v~   93 (211)
                      ||+++|++|+|||||+++++...+ ..+.++....+ ...+.+++..+.+.+||+||+.. +......+++.+|++++||
T Consensus         1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~   79 (165)
T cd04146           1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLY-SRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVY   79 (165)
T ss_pred             CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhc-eEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEE
Confidence            589999999999999999998877 45555554333 44567788888999999999885 3445677889999999999


Q ss_pred             ECCChhhHHHHHHHHHHHhhhhcc-CCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCC-CcHHHHHHH
Q 028300           94 DVTRRETFTNLSDVWAKEVDLYST-NQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTR-ENVEQCFEQ  171 (211)
Q Consensus        94 d~~~~~s~~~~~~~~~~~~~~~~~-~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~-~gv~~l~~~  171 (211)
                      |++++.+++.+.. |...+..... ..++|+++|+||+|+...+.+..++...++...+.+|+++||+++ .|++++|.+
T Consensus        80 d~~~~~s~~~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~~v~~~f~~  158 (165)
T cd04146          80 SITDRSSFDEISQ-LKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLASELGCLFFEVSAAEDYDGVHSVFHE  158 (165)
T ss_pred             ECCCHHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHHHcCCEEEEeCCCCCchhHHHHHHH
Confidence            9999999999988 7777765532 457999999999999777777888888888888999999999999 599999999


Q ss_pred             HHHHHH
Q 028300          172 LALKIM  177 (211)
Q Consensus       172 i~~~~~  177 (211)
                      +.+.+.
T Consensus       159 l~~~~~  164 (165)
T cd04146         159 LCREVR  164 (165)
T ss_pred             HHHHHh
Confidence            988664

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>cd01892 Miro2 Miro2 subfamily

Probab=99.98  E-value=1.3e-30  Score=184.82  Aligned_cols=162  Identities=22%  Similarity=0.289  Sum_probs=135.7

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhhCCCC--CCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEE
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFISSSVD--DLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGI   89 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~   89 (211)
                      ++.+||+++|.+|+|||||+++|.++.+.  .+.++.+..+....+.+.+..+.+.+||++|+..+..++..+++.+|++
T Consensus         2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~   81 (169)
T cd01892           2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVA   81 (169)
T ss_pred             CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEE
Confidence            57899999999999999999999999884  6778888777766677778888999999999999888888899999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCC-eEEEeeccCCCcHHHH
Q 028300           90 ILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGS-LFLECSAKTRENVEQC  168 (211)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~gv~~l  168 (211)
                      ++|||++++.+++.+.. |...+..   ..++|+++|+||+|+.+...+...+...+.+.+++ .++++||+++.|++++
T Consensus        82 llv~d~~~~~s~~~~~~-~~~~~~~---~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l  157 (169)
T cd01892          82 CLVYDSSDPKSFSYCAE-VYKKYFM---LGEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSKLGDSSNEL  157 (169)
T ss_pred             EEEEeCCCHHHHHHHHH-HHHHhcc---CCCCeEEEEEEcccccccccccccCHHHHHHHcCCCCCEEEEeccCccHHHH
Confidence            99999999999998877 6665432   24799999999999965544433445566677776 4799999999999999


Q ss_pred             HHHHHHHHH
Q 028300          169 FEQLALKIM  177 (211)
Q Consensus       169 ~~~i~~~~~  177 (211)
                      |+.+.+.+.
T Consensus       158 f~~l~~~~~  166 (169)
T cd01892         158 FTKLATAAQ  166 (169)
T ss_pred             HHHHHHHhh
Confidence            999998765

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd00154 Rab Rab family

Probab=99.98  E-value=3e-30  Score=180.77  Aligned_cols=157  Identities=59%  Similarity=0.953  Sum_probs=139.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhhCCCC-CCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEEEE
Q 028300           15 FKILLIGDSGVGKSSLLVSFISSSVD-DLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVY   93 (211)
Q Consensus        15 ~~I~v~G~~~~GKssli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (211)
                      +||+++|++|||||||++++.+..+. .+.++.+.++....+...+....+.+||+||+..+...+..+++++|++++|+
T Consensus         1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~   80 (159)
T cd00154           1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY   80 (159)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence            58999999999999999999999884 45788888888888888888899999999999999888999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHHHHHH
Q 028300           94 DVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLA  173 (211)
Q Consensus        94 d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~  173 (211)
                      |++++++++.+.. |+..+... ...+.|+++++||+|+........++.+.+....+.+++++|++++.|++++|++|.
T Consensus        81 d~~~~~~~~~~~~-~~~~~~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~  158 (159)
T cd00154          81 DITNRESFENLDK-WLKELKEY-APENIPIILVGNKIDLEDQRQVSTEEAQQFAKENGLLFFETSAKTGENVEELFQSLA  158 (159)
T ss_pred             ECCCHHHHHHHHH-HHHHHHHh-CCCCCcEEEEEEcccccccccccHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHh
Confidence            9999999999888 88777655 236799999999999975566677888888888889999999999999999999986

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>cd04114 Rab30 Rab30 subfamily

Probab=99.98  E-value=7.1e-30  Score=181.13  Aligned_cols=163  Identities=45%  Similarity=0.799  Sum_probs=139.8

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEE
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGII   90 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (211)
                      ...++|+++|++|+|||||++++..+.+ ..+.++.+.++....+.+.+..+.+.+||+||+..+...+..++..+|+++
T Consensus         5 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i   84 (169)
T cd04114           5 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALI   84 (169)
T ss_pred             CceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence            4569999999999999999999998777 455677777777777788888889999999999999888889999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHHH
Q 028300           91 LVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFE  170 (211)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~  170 (211)
                      +|||+++..+++.+.. |...+... ...+.|+++|+||+|+.+.+++.......+......+++++||++|.|++++|+
T Consensus        85 ~v~d~~~~~s~~~~~~-~~~~l~~~-~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~  162 (169)
T cd04114          85 LTYDITCEESFRCLPE-WLREIEQY-ANNKVITILVGNKIDLAERREVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFL  162 (169)
T ss_pred             EEEECcCHHHHHHHHH-HHHHHHHh-CCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHH
Confidence            9999999999998887 88777654 345799999999999977777776666677776778899999999999999999


Q ss_pred             HHHHHH
Q 028300          171 QLALKI  176 (211)
Q Consensus       171 ~i~~~~  176 (211)
                      +|.+.+
T Consensus       163 ~i~~~~  168 (169)
T cd04114         163 DLACRL  168 (169)
T ss_pred             HHHHHh
Confidence            998764

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]

Probab=99.97  E-value=1.1e-32  Score=178.47  Aligned_cols=187  Identities=37%  Similarity=0.660  Sum_probs=163.4

Q ss_pred             EEcCCCCcHHHHHHHHhhCCC--CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEEEEECC
Q 028300           19 LIGDSGVGKSSLLVSFISSSV--DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVT   96 (211)
Q Consensus        19 v~G~~~~GKssli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~   96 (211)
                      ++|.+++|||.|+-++..+.|  ....++.|.++....+..++.++++++||+.|+++|++....+++.+|+++++||+.
T Consensus         2 llgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydia   81 (192)
T KOG0083|consen    2 LLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDIA   81 (192)
T ss_pred             ccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeecc
Confidence            689999999999999998888  667788999999999999999999999999999999999999999999999999999


Q ss_pred             ChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHHHHHHHHH
Q 028300           97 RRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKI  176 (211)
Q Consensus        97 ~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~~  176 (211)
                      +..||++.+. |+..+.++ ....+.+++++||+|+.+++.+..++.+.+++.+++||.++||++|.+++..|-.|.+.+
T Consensus        82 nkasfdn~~~-wlsei~ey-~k~~v~l~llgnk~d~a~er~v~~ddg~kla~~y~ipfmetsaktg~nvd~af~~ia~~l  159 (192)
T KOG0083|consen   82 NKASFDNCQA-WLSEIHEY-AKEAVALMLLGNKCDLAHERAVKRDDGEKLAEAYGIPFMETSAKTGFNVDLAFLAIAEEL  159 (192)
T ss_pred             cchhHHHHHH-HHHHHHHH-HHhhHhHhhhccccccchhhccccchHHHHHHHHCCCceeccccccccHhHHHHHHHHHH
Confidence            9999999999 99999988 567888999999999999999999999999999999999999999999999999999999


Q ss_pred             HhccchhcccccccccccccCCCCCCCCCCCCCC
Q 028300          177 MEVPSLLEEGSNVVKRNILKQKPENQSPPIGGCC  210 (211)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (211)
                      .+..-..+......   ....-.....+.+--||
T Consensus       160 ~k~~~~~~~~~~~~---~~~~v~~~~k~eia~cc  190 (192)
T KOG0083|consen  160 KKLKMGAPPEGEFA---DHDSVADEGKGEIARCC  190 (192)
T ss_pred             HHhccCCCCCCccc---cchhHHhcCCCcccccc
Confidence            88765554443222   11222334455666777

>cd04149 Arf6 Arf6 subfamily

Probab=99.97  E-value=9.6e-31  Score=185.30  Aligned_cols=156  Identities=22%  Similarity=0.362  Sum_probs=124.8

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEE
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIIL   91 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   91 (211)
                      ...+||+++|++|||||||++++..+.+..+.++.+.++...  .  ...+.+.+||++|++.+..++..+++++|++|+
T Consensus         7 ~~~~kv~i~G~~~~GKTsli~~l~~~~~~~~~~t~g~~~~~~--~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~   82 (168)
T cd04149           7 NKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETV--T--YKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF   82 (168)
T ss_pred             CCccEEEEECcCCCCHHHHHHHHccCCCccccCCcccceEEE--E--ECCEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence            457899999999999999999999888866777777665422  2  256889999999999999889999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHH-----cCCeEEEeeccCCCcHH
Q 028300           92 VYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKE-----HGSLFLECSAKTRENVE  166 (211)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~-----~~~~~~~~Sa~~~~gv~  166 (211)
                      |||++++.+++++...|...+... ...++|+++|+||+|+.+.  +..+++..+...     ..++++++||++|.|++
T Consensus        83 v~D~t~~~s~~~~~~~~~~~~~~~-~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~  159 (168)
T cd04149          83 VVDSADRDRIDEARQELHRIINDR-EMRDALLLVFANKQDLPDA--MKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLY  159 (168)
T ss_pred             EEeCCchhhHHHHHHHHHHHhcCH-hhcCCcEEEEEECcCCccC--CCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChH
Confidence            999999999999888555555432 2357899999999998542  344555544321     23468999999999999


Q ss_pred             HHHHHHHH
Q 028300          167 QCFEQLAL  174 (211)
Q Consensus       167 ~l~~~i~~  174 (211)
                      ++|+||.+
T Consensus       160 ~~~~~l~~  167 (168)
T cd04149         160 EGLTWLSS  167 (168)
T ss_pred             HHHHHHhc
Confidence            99999864

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily

Probab=99.97  E-value=1.1e-30  Score=187.48  Aligned_cols=168  Identities=24%  Similarity=0.347  Sum_probs=131.8

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEE-CCEEEEEEEEeCCChhhhccchhhhccCCcEEEE
Q 028300           13 LSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTV-AGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIIL   91 (211)
Q Consensus        13 ~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   91 (211)
                      ..+||+++|++|||||||++++....+....++.+.+.....+.. ++..+.+.+||++|++.+..++..+++++|++++
T Consensus         2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~   81 (183)
T cd04152           2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVNTVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVF   81 (183)
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcCCcCCcCCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEE
Confidence            468999999999999999999998888666777776666555544 3356889999999999998899999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHH--H----cCCeEEEeeccCCCcH
Q 028300           92 VYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAK--E----HGSLFLECSAKTRENV  165 (211)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~--~----~~~~~~~~Sa~~~~gv  165 (211)
                      |||+++.+++..+.. |+..+.......++|+++|+||+|+.+.  +..++...+..  .    .+++++++||+++.|+
T Consensus        82 v~D~~~~~~~~~~~~-~~~~i~~~~~~~~~p~iiv~NK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi  158 (183)
T cd04152          82 VVDSVDVERMEEAKT-ELHKITRFSENQGVPVLVLANKQDLPNA--LSVSEVEKLLALHELSASTPWHVQPACAIIGEGL  158 (183)
T ss_pred             EEECCCHHHHHHHHH-HHHHHHhhhhcCCCcEEEEEECcCcccc--CCHHHHHHHhCccccCCCCceEEEEeecccCCCH
Confidence            999999998888877 5555544434568999999999998542  33333333322  1    1246899999999999


Q ss_pred             HHHHHHHHHHHHhccchh
Q 028300          166 EQCFEQLALKIMEVPSLL  183 (211)
Q Consensus       166 ~~l~~~i~~~~~~~~~~~  183 (211)
                      +++|++|.+.+.+.+.-.
T Consensus       159 ~~l~~~l~~~l~~~~~~~  176 (183)
T cd04152         159 QEGLEKLYEMILKRRKML  176 (183)
T ss_pred             HHHHHHHHHHHHHHHhhh
Confidence            999999999887655433

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.

>cd04147 Ras_dva Ras-dva subfamily

Probab=99.97  E-value=6.1e-30  Score=185.89  Aligned_cols=167  Identities=26%  Similarity=0.407  Sum_probs=133.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCCCCC-CCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEEEEE
Q 028300           16 KILLIGDSGVGKSSLLVSFISSSVDD-LSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYD   94 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d   94 (211)
                      ||+++|.+|+|||||+++++...+.. +.++.. ......+.+.+..+.+.+||+||+..+..++..++..+|++++|||
T Consensus         1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d   79 (198)
T cd04147           1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVE-EMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYA   79 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchh-hheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEE
Confidence            68999999999999999999988843 445543 3444566777777899999999999998888889999999999999


Q ss_pred             CCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCC-CcccCHHHHHHHHH-HcCCeEEEeeccCCCcHHHHHHHH
Q 028300           95 VTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDS-ERVVSREEGIALAK-EHGSLFLECSAKTRENVEQCFEQL  172 (211)
Q Consensus        95 ~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~-~~~v~~~~~~~~~~-~~~~~~~~~Sa~~~~gv~~l~~~i  172 (211)
                      ++++.+++.+.. |...+.......++|+++|+||+|+.. ...+......+... .++.+++++||++|.|++++|++|
T Consensus        80 ~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l  158 (198)
T cd04147          80 VDDPESFEEVER-LREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVELDWNCGFVETSAKDNENVLEVFKEL  158 (198)
T ss_pred             CCCHHHHHHHHH-HHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHHhhcCCcEEEecCCCCCCHHHHHHHH
Confidence            999999999987 666665554456899999999999865 34455544444433 456789999999999999999999


Q ss_pred             HHHHHhccchhc
Q 028300          173 ALKIMEVPSLLE  184 (211)
Q Consensus       173 ~~~~~~~~~~~~  184 (211)
                      .+.+.......+
T Consensus       159 ~~~~~~~~~~~~  170 (198)
T cd04147         159 LRQANLPYNLSP  170 (198)
T ss_pred             HHHhhcccccch
Confidence            998875544444

Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor

Probab=99.97  E-value=3.8e-31  Score=188.61  Aligned_cols=159  Identities=22%  Similarity=0.365  Sum_probs=124.1

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEE
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIIL   91 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   91 (211)
                      ..++||+++|++|||||||++++..+.+..+.|+.+......  ..  ..+.+.+||+||+..+..++..+++++|++|+
T Consensus        11 ~~~~ki~l~G~~~~GKTsL~~~~~~~~~~~~~~t~~~~~~~~--~~--~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~   86 (175)
T smart00177       11 NKEMRILMVGLDAAGKTTILYKLKLGESVTTIPTIGFNVETV--TY--KNISFTVWDVGGQDKIRPLWRHYYTNTQGLIF   86 (175)
T ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCCCCcCCccccceEEE--EE--CCEEEEEEECCCChhhHHHHHHHhCCCCEEEE
Confidence            457999999999999999999998887866777777665432  22  45789999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHH-----HcCCeEEEeeccCCCcHH
Q 028300           92 VYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAK-----EHGSLFLECSAKTRENVE  166 (211)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa~~~~gv~  166 (211)
                      |||+++++++++....|...+... ...++|++||+||+|+.+..  ..++......     ...+.++++||++|.|++
T Consensus        87 v~D~t~~~s~~~~~~~l~~~~~~~-~~~~~piilv~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~  163 (175)
T smart00177       87 VVDSNDRDRIDEAREELHRMLNED-ELRDAVILVFANKQDLPDAM--KAAEITEKLGLHSIRDRNWYIQPTCATSGDGLY  163 (175)
T ss_pred             EEECCCHHHHHHHHHHHHHHhhCH-hhcCCcEEEEEeCcCcccCC--CHHHHHHHhCccccCCCcEEEEEeeCCCCCCHH
Confidence            999999999999888555554432 23578999999999985432  2233322221     123357789999999999


Q ss_pred             HHHHHHHHHHH
Q 028300          167 QCFEQLALKIM  177 (211)
Q Consensus       167 ~l~~~i~~~~~  177 (211)
                      ++|+||.+.+.
T Consensus       164 e~~~~l~~~~~  174 (175)
T smart00177      164 EGLTWLSNNLK  174 (175)
T ss_pred             HHHHHHHHHhc
Confidence            99999987653

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).

>PLN00223 ADP-ribosylation factor; Provisional

Probab=99.97  E-value=1.8e-30  Score=185.90  Aligned_cols=160  Identities=23%  Similarity=0.377  Sum_probs=125.4

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEE
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIIL   91 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   91 (211)
                      .+++||+++|.++||||||++++..+.+..+.|+.+.+...  +  +...+.+.+||+||++.++.++..+++++|++|+
T Consensus        15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~~~~pt~g~~~~~--~--~~~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~   90 (181)
T PLN00223         15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVET--V--EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF   90 (181)
T ss_pred             CCccEEEEECCCCCCHHHHHHHHccCCCccccCCcceeEEE--E--EECCEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence            56789999999999999999999988886677777766542  2  2346789999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHc-----CCeEEEeeccCCCcHH
Q 028300           92 VYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEH-----GSLFLECSAKTRENVE  166 (211)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~-----~~~~~~~Sa~~~~gv~  166 (211)
                      |||+++++++.++...+...+... ...++|++||+||+|+....  ..++........     .+.++++||++|.|++
T Consensus        91 V~D~s~~~s~~~~~~~l~~~l~~~-~~~~~piilv~NK~Dl~~~~--~~~~~~~~l~l~~~~~~~~~~~~~Sa~~g~gv~  167 (181)
T PLN00223         91 VVDSNDRDRVVEARDELHRMLNED-ELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY  167 (181)
T ss_pred             EEeCCcHHHHHHHHHHHHHHhcCH-hhCCCCEEEEEECCCCCCCC--CHHHHHHHhCccccCCCceEEEeccCCCCCCHH
Confidence            999999999998887454444322 23579999999999986543  333333322111     1246789999999999


Q ss_pred             HHHHHHHHHHHh
Q 028300          167 QCFEQLALKIME  178 (211)
Q Consensus       167 ~l~~~i~~~~~~  178 (211)
                      ++|+||.+.+.+
T Consensus       168 e~~~~l~~~~~~  179 (181)
T PLN00223        168 EGLDWLSNNIAN  179 (181)
T ss_pred             HHHHHHHHHHhh
Confidence            999999988765

>cd04158 ARD1 ARD1 subfamily

Probab=99.97  E-value=2e-30  Score=183.94  Aligned_cols=159  Identities=25%  Similarity=0.423  Sum_probs=126.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEEEEEC
Q 028300           16 KILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDV   95 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~   95 (211)
                      ||+++|.+|||||||++++.+..+..+.+|.+.....    ++...+.+.+||+||+..+...+..+++.+|++++|||+
T Consensus         1 ~vvlvG~~~~GKTsl~~~l~~~~~~~~~~T~~~~~~~----~~~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~   76 (169)
T cd04158           1 RVVTLGLDGAGKTTILFKLKQDEFMQPIPTIGFNVET----VEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDS   76 (169)
T ss_pred             CEEEECCCCCCHHHHHHHHhcCCCCCcCCcCceeEEE----EEECCEEEEEEECCCChhcchHHHHHhccCCEEEEEEeC
Confidence            6899999999999999999998886677777655542    223467899999999999988899999999999999999


Q ss_pred             CChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHc------CCeEEEeeccCCCcHHHHH
Q 028300           96 TRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEH------GSLFLECSAKTRENVEQCF  169 (211)
Q Consensus        96 ~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~------~~~~~~~Sa~~~~gv~~l~  169 (211)
                      ++++++.++...+...+... ...+.|++||+||+|+.+  .+..++..++....      .+.++++||++|.|++++|
T Consensus        77 s~~~s~~~~~~~~~~~~~~~-~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f  153 (169)
T cd04158          77 SHRDRVSEAHSELAKLLTEK-ELRDALLLIFANKQDVAG--ALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGL  153 (169)
T ss_pred             CcHHHHHHHHHHHHHHhcCh-hhCCCCEEEEEeCcCccc--CCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHH
Confidence            99999999988444444332 335689999999999854  34555555554322      1368899999999999999


Q ss_pred             HHHHHHHHhccc
Q 028300          170 EQLALKIMEVPS  181 (211)
Q Consensus       170 ~~i~~~~~~~~~  181 (211)
                      +||.+.+.+...
T Consensus       154 ~~l~~~~~~~~~  165 (169)
T cd04158         154 DWLSRQLVAAGV  165 (169)
T ss_pred             HHHHHHHhhccc
Confidence            999988877654

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra

>cd01870 RhoA_like RhoA-like subfamily

Probab=99.97  E-value=1.5e-29  Score=180.41  Aligned_cols=159  Identities=31%  Similarity=0.592  Sum_probs=131.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEEEE
Q 028300           15 FKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVY   93 (211)
Q Consensus        15 ~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (211)
                      .||+++|++|||||||++++....+ ..+.++.+..+. ..+.+++..+.+.+||++|++.+...+...+.++|++++||
T Consensus         2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (175)
T cd01870           2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF   80 (175)
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceE-EEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEE
Confidence            5899999999999999999999888 456666665443 35567778889999999999999888888899999999999


Q ss_pred             ECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCC------------cccCHHHHHHHHHHcCC-eEEEeecc
Q 028300           94 DVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSE------------RVVSREEGIALAKEHGS-LFLECSAK  160 (211)
Q Consensus        94 d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~------------~~v~~~~~~~~~~~~~~-~~~~~Sa~  160 (211)
                      |+++.++++.+...|...+...  ..++|+++|+||+|+.+.            ..+...+..+++...+. +++++||+
T Consensus        81 ~~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~  158 (175)
T cd01870          81 SIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAK  158 (175)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEeccc
Confidence            9999999999976688877654  458899999999998543            22445666777776664 79999999


Q ss_pred             CCCcHHHHHHHHHHHH
Q 028300          161 TRENVEQCFEQLALKI  176 (211)
Q Consensus       161 ~~~gv~~l~~~i~~~~  176 (211)
                      +|.|++++|++|.+.+
T Consensus       159 ~~~~v~~lf~~l~~~~  174 (175)
T cd01870         159 TKEGVREVFEMATRAA  174 (175)
T ss_pred             cCcCHHHHHHHHHHHh
Confidence            9999999999998754

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>cd00876 Ras Ras family

Probab=99.97  E-value=1.3e-29  Score=178.01  Aligned_cols=158  Identities=40%  Similarity=0.666  Sum_probs=133.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEEEEE
Q 028300           16 KILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYD   94 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d   94 (211)
                      ||+++|++|||||||++++.+..+ ..+.++.. +.....+...+..+.+.+||+||+..+...+..+++.+|++++|||
T Consensus         1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d   79 (160)
T cd00876           1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIE-DSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYS   79 (160)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChh-HeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEE
Confidence            689999999999999999998877 44555545 5555566677778899999999999988888999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHHHHHHH
Q 028300           95 VTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLAL  174 (211)
Q Consensus        95 ~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~  174 (211)
                      +++++++.++.. |...+.......++|+++|+||+|+.....+..+++..+...++.+++++|++++.|++++|++|.+
T Consensus        80 ~~~~~s~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~  158 (160)
T cd00876          80 ITDRESFEEIKG-YREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKEWGCPFIETSAKDNINIDEVFKLLVR  158 (160)
T ss_pred             CCCHHHHHHHHH-HHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHh
Confidence            999999999988 4444443323368999999999999876777778888888888899999999999999999999987


Q ss_pred             H
Q 028300          175 K  175 (211)
Q Consensus       175 ~  175 (211)
                      .
T Consensus       159 ~  159 (160)
T cd00876         159 E  159 (160)
T ss_pred             h
Confidence            5

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>cd04150 Arf1_5_like Arf1-Arf5-like subfamily

Probab=99.97  E-value=8.9e-31  Score=183.92  Aligned_cols=153  Identities=23%  Similarity=0.394  Sum_probs=119.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEEEEE
Q 028300           15 FKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYD   94 (211)
Q Consensus        15 ~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d   94 (211)
                      +||+++|.+|||||||++++..+.+..+.|+.+.....  +..  ..+.+.+||+||+..+...+..+++++|++++|||
T Consensus         1 ~kv~~~G~~~~GKTsli~~l~~~~~~~~~pt~g~~~~~--~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D   76 (159)
T cd04150           1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVET--VEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD   76 (159)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCcccCCCCCcceEE--EEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEe
Confidence            48999999999999999999888886677777766542  222  46889999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHH-----HcCCeEEEeeccCCCcHHHHH
Q 028300           95 VTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAK-----EHGSLFLECSAKTRENVEQCF  169 (211)
Q Consensus        95 ~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa~~~~gv~~l~  169 (211)
                      +++..++.++...|...+... ...++|++|++||+|+.+..  ...+......     ...+.++++||++|.|++++|
T Consensus        77 ~~~~~s~~~~~~~~~~~~~~~-~~~~~piilv~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~  153 (159)
T cd04150          77 SNDRERIGEAREELQRMLNED-ELRDAVLLVFANKQDLPNAM--SAAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGL  153 (159)
T ss_pred             CCCHHHHHHHHHHHHHHHhcH-HhcCCCEEEEEECCCCCCCC--CHHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHH
Confidence            999999999988555555432 23468999999999985432  2222222111     123457899999999999999


Q ss_pred             HHHHH
Q 028300          170 EQLAL  174 (211)
Q Consensus       170 ~~i~~  174 (211)
                      +||.+
T Consensus       154 ~~l~~  158 (159)
T cd04150         154 DWLSN  158 (159)
T ss_pred             HHHhc
Confidence            99864

This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents

>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=1.5e-29  Score=165.60  Aligned_cols=168  Identities=49%  Similarity=0.822  Sum_probs=153.8

Q ss_pred             CCceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcE
Q 028300           10 SYDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQG   88 (211)
Q Consensus        10 ~~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~   88 (211)
                      .+..-+|-+++|+-|+|||.|++++....| .....+.|.++..+.+...+.++++++||+.|+++|+...+.+++.+-+
T Consensus         7 nysyifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaag   86 (215)
T KOG0097|consen    7 NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAG   86 (215)
T ss_pred             chhheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccc
Confidence            345678999999999999999999999998 8889999999999999999999999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHH
Q 028300           89 IILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQC  168 (211)
Q Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l  168 (211)
                      .+.|||++....+..+.. |+...+.. ..++..+++++||.|+...+++..+++++|+.+.+..|.++|+++|.++++.
T Consensus        87 almvyditrrstynhlss-wl~dar~l-tnpnt~i~lignkadle~qrdv~yeeak~faeengl~fle~saktg~nveda  164 (215)
T KOG0097|consen   87 ALMVYDITRRSTYNHLSS-WLTDARNL-TNPNTVIFLIGNKADLESQRDVTYEEAKEFAEENGLMFLEASAKTGQNVEDA  164 (215)
T ss_pred             eeEEEEehhhhhhhhHHH-HHhhhhcc-CCCceEEEEecchhhhhhcccCcHHHHHHHHhhcCeEEEEecccccCcHHHH
Confidence            999999999999999988 88777655 6788999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhc
Q 028300          169 FEQLALKIMEV  179 (211)
Q Consensus       169 ~~~i~~~~~~~  179 (211)
                      |-+....+..+
T Consensus       165 fle~akkiyqn  175 (215)
T KOG0097|consen  165 FLETAKKIYQN  175 (215)
T ss_pred             HHHHHHHHHHh
Confidence            86665555443

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=99.97  E-value=1.7e-30  Score=186.27  Aligned_cols=161  Identities=25%  Similarity=0.412  Sum_probs=125.2

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEE
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIIL   91 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   91 (211)
                      ...+||+++|++|||||||++++..+.+..+.+|.+.++..  +.  ...+.+.+||+||++.++..+..+++.+|++|+
T Consensus        15 ~~~~kv~lvG~~~vGKTsli~~~~~~~~~~~~~T~~~~~~~--~~--~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~   90 (182)
T PTZ00133         15 KKEVRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVET--VE--YKNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIF   90 (182)
T ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCccccCCccccceEE--EE--ECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence            55799999999999999999999888886677777766542  22  255789999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHH-----HcCCeEEEeeccCCCcHH
Q 028300           92 VYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAK-----EHGSLFLECSAKTRENVE  166 (211)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa~~~~gv~  166 (211)
                      |||+++++++.++...+...+... ...++|++||+||.|+.+..  ...+......     ...+.++++||++|.|++
T Consensus        91 v~D~t~~~s~~~~~~~l~~~~~~~-~~~~~piilv~NK~Dl~~~~--~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~  167 (182)
T PTZ00133         91 VVDSNDRERIGDAREELERMLSED-ELRDAVLLVFANKQDLPNAM--STTEVTEKLGLHSVRQRNWYIQGCCATTAQGLY  167 (182)
T ss_pred             EEeCCCHHHHHHHHHHHHHHHhCH-hhcCCCEEEEEeCCCCCCCC--CHHHHHHHhCCCcccCCcEEEEeeeCCCCCCHH
Confidence            999999999999887555554432 23578999999999985432  2222222111     112357799999999999


Q ss_pred             HHHHHHHHHHHhc
Q 028300          167 QCFEQLALKIMEV  179 (211)
Q Consensus       167 ~l~~~i~~~~~~~  179 (211)
                      ++|+||.+.+.+.
T Consensus       168 e~~~~l~~~i~~~  180 (182)
T PTZ00133        168 EGLDWLSANIKKS  180 (182)
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999877654

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=99.97  E-value=3.3e-29  Score=179.53  Aligned_cols=164  Identities=41%  Similarity=0.616  Sum_probs=136.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEEEE
Q 028300           15 FKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVY   93 (211)
Q Consensus        15 ~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (211)
                      .||+++|++|+|||||++++....+ ..+.++....+ ...+...+..+.+.+||+||+.++...+..++..+|+++++|
T Consensus         2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (180)
T cd04137           2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVY   80 (180)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhE-EEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEE
Confidence            6899999999999999999998887 34555554333 344566777889999999999999888899999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHHHHHH
Q 028300           94 DVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLA  173 (211)
Q Consensus        94 d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~  173 (211)
                      |+++..+++.+..+|...+... ...+.|+++|+||+|+...+.+...+...++..++.+++++||+++.|+.++|.++.
T Consensus        81 d~~~~~~~~~~~~~~~~~~~~~-~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~  159 (180)
T cd04137          81 SVTSRKSFEVVKVIYDKILDML-GKESVPIVLVGNKSDLHTQRQVSTEEGKELAESWGAAFLESSARENENVEEAFELLI  159 (180)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEEchhhhhcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence            9999999999998555555533 456789999999999976666666667777777888999999999999999999999


Q ss_pred             HHHHhcc
Q 028300          174 LKIMEVP  180 (211)
Q Consensus       174 ~~~~~~~  180 (211)
                      +.+....
T Consensus       160 ~~~~~~~  166 (180)
T cd04137         160 EEIEKVE  166 (180)
T ss_pred             HHHHHhc
Confidence            8876554

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>cd04129 Rho2 Rho2 subfamily

Probab=99.97  E-value=4.2e-29  Score=179.92  Aligned_cols=164  Identities=33%  Similarity=0.552  Sum_probs=133.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEEEE
Q 028300           15 FKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVY   93 (211)
Q Consensus        15 ~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (211)
                      .||+|+|++|+|||||++++..+.+ ..+.++....+. ..+.+.+..+.+.+||++|+..+.......+..+|+++++|
T Consensus         2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~   80 (187)
T cd04129           2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYV-TDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGF   80 (187)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEE-EEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEE
Confidence            5899999999999999999998777 344444443333 34566777889999999999888877777889999999999


Q ss_pred             ECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCC----------CcccCHHHHHHHHHHcCC-eEEEeeccCC
Q 028300           94 DVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDS----------ERVVSREEGIALAKEHGS-LFLECSAKTR  162 (211)
Q Consensus        94 d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~----------~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~  162 (211)
                      |+++.++++.+...|...+...  ..++|+++|+||+|+.+          .+.+..++...++...+. +|+++||++|
T Consensus        81 ~i~~~~s~~~~~~~~~~~i~~~--~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~  158 (187)
T cd04129          81 AVDTPDSLENVRTKWIEEVRRY--CPNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTG  158 (187)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCC
Confidence            9999999999986688888754  34699999999999843          234555677777888875 7999999999


Q ss_pred             CcHHHHHHHHHHHHHhccc
Q 028300          163 ENVEQCFEQLALKIMEVPS  181 (211)
Q Consensus       163 ~gv~~l~~~i~~~~~~~~~  181 (211)
                      .|++++|+++.+.+...++
T Consensus       159 ~~v~~~f~~l~~~~~~~~~  177 (187)
T cd04129         159 EGVDDVFEAATRAALLVRK  177 (187)
T ss_pred             CCHHHHHHHHHHHHhcccC
Confidence            9999999999987765554

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).

>cd00157 Rho Rho (Ras homology) family

Probab=99.97  E-value=3e-29  Score=178.21  Aligned_cols=157  Identities=35%  Similarity=0.625  Sum_probs=131.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEEEE
Q 028300           15 FKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVY   93 (211)
Q Consensus        15 ~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (211)
                      +||+++|++|+|||||+++|.++.+ ..+.++.. ..........+..+.+.+||+||+.++.......++.+|++++||
T Consensus         1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   79 (171)
T cd00157           1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVF-DNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICF   79 (171)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEE
Confidence            6899999999999999999999988 44444444 334445566788899999999999988888888889999999999


Q ss_pred             ECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCc-----------ccCHHHHHHHHHHcCC-eEEEeeccC
Q 028300           94 DVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSER-----------VVSREEGIALAKEHGS-LFLECSAKT  161 (211)
Q Consensus        94 d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~-----------~v~~~~~~~~~~~~~~-~~~~~Sa~~  161 (211)
                      |++++.++......|...+..+  ..+.|+++|+||+|+.+..           .+..++...+...++. +|+++||++
T Consensus        80 d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~  157 (171)
T cd00157          80 SVDSPSSFENVKTKWIPEIRHY--CPNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALT  157 (171)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCC
Confidence            9999999999888788887765  3489999999999986544           2346667777777777 899999999


Q ss_pred             CCcHHHHHHHHHH
Q 028300          162 RENVEQCFEQLAL  174 (211)
Q Consensus       162 ~~gv~~l~~~i~~  174 (211)
                      +.|++++|++|.+
T Consensus       158 ~~gi~~l~~~i~~  170 (171)
T cd00157         158 QEGVKEVFEEAIR  170 (171)
T ss_pred             CCCHHHHHHHHhh
Confidence            9999999999875

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>cd04154 Arl2 Arl2 subfamily

Probab=99.97  E-value=1.3e-29  Score=180.54  Aligned_cols=158  Identities=25%  Similarity=0.388  Sum_probs=123.7

Q ss_pred             CCceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEE
Q 028300           10 SYDLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGI   89 (211)
Q Consensus        10 ~~~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~   89 (211)
                      ..+..++|+++|++|||||||++++.+..+..+.++.+....  .+.+.  .+.+.+||+||+..+...+..+++.+|++
T Consensus        10 ~~~~~~kv~ivG~~~~GKTsL~~~l~~~~~~~~~~t~g~~~~--~~~~~--~~~l~l~D~~G~~~~~~~~~~~~~~~d~~   85 (173)
T cd04154          10 LKEREMRILILGLDNAGKTTILKKLLGEDIDTISPTLGFQIK--TLEYE--GYKLNIWDVGGQKTLRPYWRNYFESTDAL   85 (173)
T ss_pred             cCCCccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccceE--EEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEE
Confidence            345678999999999999999999998877767777764443  33333  57899999999998888889999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHH-----HcCCeEEEeeccCCCc
Q 028300           90 ILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAK-----EHGSLFLECSAKTREN  164 (211)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa~~~~g  164 (211)
                      ++|||++++.++.+....+...+. .....++|+++|+||+|+.+..  ..++......     ...++++++||++|.|
T Consensus        86 i~v~d~~~~~s~~~~~~~~~~~~~-~~~~~~~p~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g  162 (173)
T cd04154          86 IWVVDSSDRLRLDDCKRELKELLQ-EERLAGATLLILANKQDLPGAL--SEEEIREALELDKISSHHWRIQPCSAVTGEG  162 (173)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHh-ChhhcCCCEEEEEECcccccCC--CHHHHHHHhCccccCCCceEEEeccCCCCcC
Confidence            999999999999888773333333 2234689999999999986543  3344444432     2356899999999999


Q ss_pred             HHHHHHHHHH
Q 028300          165 VEQCFEQLAL  174 (211)
Q Consensus       165 v~~l~~~i~~  174 (211)
                      ++++|+++.+
T Consensus       163 i~~l~~~l~~  172 (173)
T cd04154         163 LLQGIDWLVD  172 (173)
T ss_pred             HHHHHHHHhc
Confidence            9999999864

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>KOG0395 consensus Ras-related GTPase [General function prediction only]

Probab=99.97  E-value=4.7e-29  Score=179.19  Aligned_cols=166  Identities=39%  Similarity=0.581  Sum_probs=148.5

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEE
Q 028300           13 LSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIIL   91 (211)
Q Consensus        13 ~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   91 (211)
                      ..+||+++|.+|+|||+|..++....| ..+.|+.. +.+...+.+++....+.++|++|+.++..+...++...|++++
T Consensus         2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptie-d~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~l   80 (196)
T KOG0395|consen    2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIE-DSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLL   80 (196)
T ss_pred             CceEEEEECCCCCCcchheeeecccccccccCCCcc-ccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEE
Confidence            468999999999999999999999999 66777777 5566777888999999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHHHH
Q 028300           92 VYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQ  171 (211)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~  171 (211)
                      ||++++..||+.+..++... ........+|+++|+||+|+...+.+..++...++..++++|+|+||+.+.+++++|..
T Consensus        81 Vysitd~~SF~~~~~l~~~I-~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~~~f~E~Sak~~~~v~~~F~~  159 (196)
T KOG0395|consen   81 VYSITDRSSFEEAKQLREQI-LRVKGRDDVPIILVGNKCDLERERQVSEEEGKALARSWGCAFIETSAKLNYNVDEVFYE  159 (196)
T ss_pred             EEECCCHHHHHHHHHHHHHH-HHhhCcCCCCEEEEEEcccchhccccCHHHHHHHHHhcCCcEEEeeccCCcCHHHHHHH
Confidence            99999999999999955555 33335567899999999999988999999999999999999999999999999999999


Q ss_pred             HHHHHHhcc
Q 028300          172 LALKIMEVP  180 (211)
Q Consensus       172 i~~~~~~~~  180 (211)
                      ++..+...+
T Consensus       160 L~r~~~~~~  168 (196)
T KOG0395|consen  160 LVREIRLPR  168 (196)
T ss_pred             HHHHHHhhh
Confidence            999887733

>cd01893 Miro1 Miro1 subfamily

Probab=99.97  E-value=1.2e-28  Score=174.44  Aligned_cols=161  Identities=31%  Similarity=0.415  Sum_probs=124.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEEEEE
Q 028300           15 FKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYD   94 (211)
Q Consensus        15 ~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d   94 (211)
                      +||+++|.+|||||||+++|..+.+....+.....+ .....+.+..+.+.+||+||...+...+...+..+|++++|||
T Consensus         1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d   79 (166)
T cd01893           1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLPEI-TIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVYS   79 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCccCCCcccce-EeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEE
Confidence            489999999999999999999998844433322222 2334455677899999999998877777778899999999999


Q ss_pred             CCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccC--HHHHHHHHHHcC--CeEEEeeccCCCcHHHHHH
Q 028300           95 VTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVS--REEGIALAKEHG--SLFLECSAKTRENVEQCFE  170 (211)
Q Consensus        95 ~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~--~~~~~~~~~~~~--~~~~~~Sa~~~~gv~~l~~  170 (211)
                      ++++++++.+...|...++..  ..++|+++|+||+|+.+.....  .++...+...+.  .+++++||+++.|++++|+
T Consensus        80 ~~~~~s~~~~~~~~~~~i~~~--~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~  157 (166)
T cd01893          80 VDRPSTLERIRTKWLPLIRRL--GVKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFY  157 (166)
T ss_pred             CCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEeccccccCHHHHHH
Confidence            999999999876688887765  2489999999999996654321  222223333332  3799999999999999999


Q ss_pred             HHHHHHHh
Q 028300          171 QLALKIME  178 (211)
Q Consensus       171 ~i~~~~~~  178 (211)
                      .+.+.+..
T Consensus       158 ~~~~~~~~  165 (166)
T cd01893         158 YAQKAVLH  165 (166)
T ss_pred             HHHHHhcC
Confidence            99887653

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=99.97  E-value=1.2e-29  Score=179.10  Aligned_cols=151  Identities=25%  Similarity=0.327  Sum_probs=121.0

Q ss_pred             EEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEEEEEC
Q 028300           17 ILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDV   95 (211)
Q Consensus        17 I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~   95 (211)
                      |+++|++|||||||+++|.+..+ ..+.|+.+....    .+....+.+.+||++|+..+...+..+++++|++++|||.
T Consensus         2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~~----~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~   77 (164)
T cd04162           2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNSV----AIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDS   77 (164)
T ss_pred             EEEECCCCCCHHHHHHHHhcCCCcccccccCCcceE----EEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEEC
Confidence            78999999999999999998877 566777775432    3445678899999999999999999999999999999999


Q ss_pred             CChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCH----HHHHHHHHHcCCeEEEeeccC------CCcH
Q 028300           96 TRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSR----EEGIALAKEHGSLFLECSAKT------RENV  165 (211)
Q Consensus        96 ~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~----~~~~~~~~~~~~~~~~~Sa~~------~~gv  165 (211)
                      ++..++..... |+..+...  ..++|+++|+||+|+...+.+..    .+...++...+++++++||++      ++||
T Consensus        78 t~~~s~~~~~~-~l~~~~~~--~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v  154 (164)
T cd04162          78 ADSERLPLARQ-ELHQLLQH--PPDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAV  154 (164)
T ss_pred             CCHHHHHHHHH-HHHHHHhC--CCCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHH
Confidence            99999998887 55544322  36899999999999976554332    123444455678899999988      9999


Q ss_pred             HHHHHHHHH
Q 028300          166 EQCFEQLAL  174 (211)
Q Consensus       166 ~~l~~~i~~  174 (211)
                      +++|+.++.
T Consensus       155 ~~~~~~~~~  163 (164)
T cd04162         155 KDLLSQLIN  163 (164)
T ss_pred             HHHHHHHhc
Confidence            999998764

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=99.96  E-value=9.8e-28  Score=176.49  Aligned_cols=169  Identities=31%  Similarity=0.538  Sum_probs=143.3

Q ss_pred             CCCceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCc
Q 028300            9 NSYDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQ   87 (211)
Q Consensus         9 ~~~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d   87 (211)
                      ......+||+++|++|||||||+++++.+.+ ..+.++.+.++....+..++..+.+.+||++|+..+..++..++.+++
T Consensus         4 ~~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~   83 (215)
T PTZ00132          4 MDEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQ   83 (215)
T ss_pred             ccCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCC
Confidence            4556679999999999999999998888877 678889998888877777888999999999999999888888999999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHH
Q 028300           88 GIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQ  167 (211)
Q Consensus        88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~  167 (211)
                      ++++|||+++..++..+.. |...+...  ..++|+++++||+|+.+. .+.... ..+....++.++++|++++.|+++
T Consensus        84 ~~i~v~d~~~~~s~~~~~~-~~~~i~~~--~~~~~i~lv~nK~Dl~~~-~~~~~~-~~~~~~~~~~~~e~Sa~~~~~v~~  158 (215)
T PTZ00132         84 CAIIMFDVTSRITYKNVPN-WHRDIVRV--CENIPIVLVGNKVDVKDR-QVKARQ-ITFHRKKNLQYYDISAKSNYNFEK  158 (215)
T ss_pred             EEEEEEECcCHHHHHHHHH-HHHHHHHh--CCCCCEEEEEECccCccc-cCCHHH-HHHHHHcCCEEEEEeCCCCCCHHH
Confidence            9999999999999999987 77776644  357899999999998543 233332 356667788999999999999999


Q ss_pred             HHHHHHHHHHhccch
Q 028300          168 CFEQLALKIMEVPSL  182 (211)
Q Consensus       168 l~~~i~~~~~~~~~~  182 (211)
                      +|.+|.+.+......
T Consensus       159 ~f~~ia~~l~~~p~~  173 (215)
T PTZ00132        159 PFLWLARRLTNDPNL  173 (215)
T ss_pred             HHHHHHHHHhhcccc
Confidence            999999998877654

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=99.96  E-value=9.4e-29  Score=176.18  Aligned_cols=155  Identities=26%  Similarity=0.433  Sum_probs=121.8

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEEE
Q 028300           13 LSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILV   92 (211)
Q Consensus        13 ~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (211)
                      ..++|+++|++|+|||||++++..+.+..+.++.+.++..  +..  ..+.+.+||+||+..+...+..++..+|++++|
T Consensus        14 ~~~kv~~~G~~~~GKTsl~~~l~~~~~~~~~~t~~~~~~~--~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V   89 (174)
T cd04153          14 KEYKVIIVGLDNAGKTTILYQFLLGEVVHTSPTIGSNVEE--IVY--KNIRFLMWDIGGQESLRSSWNTYYTNTDAVILV   89 (174)
T ss_pred             CccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccceEE--EEE--CCeEEEEEECCCCHHHHHHHHHHhhcCCEEEEE
Confidence            4689999999999999999999988886677777766542  222  357899999999999988899999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHH-----HHcCCeEEEeeccCCCcHHH
Q 028300           93 YDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALA-----KEHGSLFLECSAKTRENVEQ  167 (211)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~~~gv~~  167 (211)
                      +|+++.+++......+...+... ...++|+++++||+|+...  ...++..+..     ...+++++++||+++.|+++
T Consensus        90 ~D~s~~~~~~~~~~~l~~~~~~~-~~~~~p~viv~NK~Dl~~~--~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~e  166 (174)
T cd04153          90 IDSTDRERLPLTKEELYKMLAHE-DLRKAVLLVLANKQDLKGA--MTPAEISESLGLTSIRDHTWHIQGCCALTGEGLPE  166 (174)
T ss_pred             EECCCHHHHHHHHHHHHHHHhch-hhcCCCEEEEEECCCCCCC--CCHHHHHHHhCcccccCCceEEEecccCCCCCHHH
Confidence            99999999888877455554432 2357999999999998542  2333322221     12345799999999999999


Q ss_pred             HHHHHHH
Q 028300          168 CFEQLAL  174 (211)
Q Consensus       168 l~~~i~~  174 (211)
                      +|++|.+
T Consensus       167 ~~~~l~~  173 (174)
T cd04153         167 GLDWIAS  173 (174)
T ss_pred             HHHHHhc
Confidence            9999864

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]

Probab=99.96  E-value=5.7e-29  Score=175.06  Aligned_cols=167  Identities=33%  Similarity=0.580  Sum_probs=148.5

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEEC-CEEEEEEEEeCCChhhhccchhhhccCCcEE
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVA-GKRLKLTIWDTAGQERFRTLTSSYYRGAQGI   89 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~   89 (211)
                      ...+|++++|+..+|||+|+-.+..+.| ..+.||.. +.+...+.++ +..+.+.+|||+|+++|+.+++..++++|++
T Consensus         2 ~~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVF-dnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvf   80 (198)
T KOG0393|consen    2 SRRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVF-DNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVF   80 (198)
T ss_pred             ceeeEEEEECCCCcCceEEEEEeccCcCcccccCeEE-ccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEE
Confidence            3578999999999999999999999988 67778777 5555667774 9999999999999999999888899999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCC------------cccCHHHHHHHHHHcCC-eEEE
Q 028300           90 ILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSE------------RVVSREEGIALAKEHGS-LFLE  156 (211)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~------------~~v~~~~~~~~~~~~~~-~~~~  156 (211)
                      ++||++.+++|++++...|.+++.++  .++.|+++|++|.||.+.            ..+..++...+++..|+ .|+|
T Consensus        81 l~cfsv~~p~S~~nv~~kW~pEi~~~--cp~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~E  158 (198)
T KOG0393|consen   81 LLCFSVVSPESFENVKSKWIPEIKHH--CPNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLE  158 (198)
T ss_pred             EEEEEcCChhhHHHHHhhhhHHHHhh--CCCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeee
Confidence            99999999999999999999999987  689999999999999632            35777888999999995 6999


Q ss_pred             eeccCCCcHHHHHHHHHHHHHhccc
Q 028300          157 CSAKTRENVEQCFEQLALKIMEVPS  181 (211)
Q Consensus       157 ~Sa~~~~gv~~l~~~i~~~~~~~~~  181 (211)
                      |||+++.|++++|+..+...+....
T Consensus       159 cSa~tq~~v~~vF~~a~~~~l~~~~  183 (198)
T KOG0393|consen  159 CSALTQKGVKEVFDEAIRAALRPPQ  183 (198)
T ss_pred             ehhhhhCCcHHHHHHHHHHHhcccc
Confidence            9999999999999999998877655

>cd04151 Arl1 Arl1 subfamily

Probab=99.96  E-value=5.3e-29  Score=174.84  Aligned_cols=152  Identities=24%  Similarity=0.350  Sum_probs=116.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEEEEEC
Q 028300           16 KILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDV   95 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~   95 (211)
                      ||+++|++++|||||++++..+.+..+.++.+.+...  +  +.....+.+||+||+..+...+..++..+|++++|+|+
T Consensus         1 kv~lvG~~~~GKTsl~~~l~~~~~~~~~~t~~~~~~~--~--~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~   76 (158)
T cd04151           1 RILILGLDNAGKTTILYRLQLGEVVTTIPTIGFNVET--V--TYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDS   76 (158)
T ss_pred             CEEEECCCCCCHHHHHHHHccCCCcCcCCccCcCeEE--E--EECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEEC
Confidence            6899999999999999999888776666666655442  2  23457899999999999998899999999999999999


Q ss_pred             CChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHH-----HcCCeEEEeeccCCCcHHHHHH
Q 028300           96 TRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAK-----EHGSLFLECSAKTRENVEQCFE  170 (211)
Q Consensus        96 ~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa~~~~gv~~l~~  170 (211)
                      +++.++......|...+... ...++|+++|+||+|+.+..  ...+......     ..+.+++++||+++.|++++|+
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~-~~~~~piiiv~nK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  153 (158)
T cd04151          77 TDRDRLGTAKEELHAMLEEE-ELKGAVLLVFANKQDMPGAL--SEAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMD  153 (158)
T ss_pred             CCHHHHHHHHHHHHHHHhch-hhcCCcEEEEEeCCCCCCCC--CHHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHH
Confidence            99988877766555555432 23579999999999986433  2222221111     1234699999999999999999


Q ss_pred             HHHH
Q 028300          171 QLAL  174 (211)
Q Consensus       171 ~i~~  174 (211)
                      +|.+
T Consensus       154 ~l~~  157 (158)
T cd04151         154 WLVN  157 (158)
T ss_pred             HHhc
Confidence            9864

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.96  E-value=2.9e-28  Score=173.50  Aligned_cols=159  Identities=32%  Similarity=0.455  Sum_probs=130.4

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEE
Q 028300           11 YDLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGII   90 (211)
Q Consensus        11 ~~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (211)
                      ..+.+||+++|+.|||||||++++..+.+....||.|.......+    .++.+.+||++|+..++..|..++.++|++|
T Consensus        11 ~~~~~~ililGl~~sGKTtll~~l~~~~~~~~~pT~g~~~~~i~~----~~~~~~~~d~gG~~~~~~~w~~y~~~~~~iI   86 (175)
T PF00025_consen   11 KKKEIKILILGLDGSGKTTLLNRLKNGEISETIPTIGFNIEEIKY----KGYSLTIWDLGGQESFRPLWKSYFQNADGII   86 (175)
T ss_dssp             TTSEEEEEEEESTTSSHHHHHHHHHSSSEEEEEEESSEEEEEEEE----TTEEEEEEEESSSGGGGGGGGGGHTTESEEE
T ss_pred             cCcEEEEEEECCCccchHHHHHHhhhccccccCcccccccceeee----CcEEEEEEeccccccccccceeeccccceeE
Confidence            478999999999999999999999988777777888877664333    4567899999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHH------HcCCeEEEeeccCCCc
Q 028300           91 LVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAK------EHGSLFLECSAKTREN  164 (211)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~------~~~~~~~~~Sa~~~~g  164 (211)
                      ||+|.++.+.+.+....+...+... ...++|++|++||.|+.+.  ...++......      ...+.++.|||.+|.|
T Consensus        87 fVvDssd~~~l~e~~~~L~~ll~~~-~~~~~piLIl~NK~D~~~~--~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g~G  163 (175)
T PF00025_consen   87 FVVDSSDPERLQEAKEELKELLNDP-ELKDIPILILANKQDLPDA--MSEEEIKEYLGLEKLKNKRPWSVFSCSAKTGEG  163 (175)
T ss_dssp             EEEETTGGGGHHHHHHHHHHHHTSG-GGTTSEEEEEEESTTSTTS--STHHHHHHHTTGGGTTSSSCEEEEEEBTTTTBT
T ss_pred             EEEecccceeecccccchhhhcchh-hcccceEEEEeccccccCc--chhhHHHhhhhhhhcccCCceEEEeeeccCCcC
Confidence            9999999999999988666666543 4468999999999998654  34444443332      1334589999999999


Q ss_pred             HHHHHHHHHHHH
Q 028300          165 VEQCFEQLALKI  176 (211)
Q Consensus       165 v~~l~~~i~~~~  176 (211)
                      +.+.++||.+.+
T Consensus       164 v~e~l~WL~~~~  175 (175)
T PF00025_consen  164 VDEGLEWLIEQI  175 (175)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcC
Confidence            999999999864

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>cd00879 Sar1 Sar1 subfamily

Probab=99.96  E-value=3.4e-28  Score=175.73  Aligned_cols=157  Identities=24%  Similarity=0.335  Sum_probs=123.5

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEE
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIIL   91 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   91 (211)
                      .+.++|+++|++|||||||++++.+..+..+.++.+....  .+.+.  +..+.+||+||+..+...+..+++++|++++
T Consensus        17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~~~~~T~~~~~~--~i~~~--~~~~~l~D~~G~~~~~~~~~~~~~~ad~iil   92 (190)
T cd00879          17 NKEAKILFLGLDNAGKTTLLHMLKDDRLAQHVPTLHPTSE--ELTIG--NIKFKTFDLGGHEQARRLWKDYFPEVDGIVF   92 (190)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCccCcceE--EEEEC--CEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence            4579999999999999999999998887666666665443  33333  4678999999999888888899999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHH----------------cCCeEE
Q 028300           92 VYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKE----------------HGSLFL  155 (211)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~----------------~~~~~~  155 (211)
                      |+|+++..++......+...+... ...+.|+++++||+|+..  .+..++.+.....                ..++++
T Consensus        93 V~D~~~~~s~~~~~~~~~~i~~~~-~~~~~pvivv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (190)
T cd00879          93 LVDAADPERFQESKEELDSLLSDE-ELANVPFLILGNKIDLPG--AVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVF  169 (190)
T ss_pred             EEECCcHHHHHHHHHHHHHHHcCc-cccCCCEEEEEeCCCCCC--CcCHHHHHHHhCcccccccccccccccCceeEEEE
Confidence            999999988888777444444322 346799999999999854  3455555554432                224689


Q ss_pred             EeeccCCCcHHHHHHHHHHH
Q 028300          156 ECSAKTRENVEQCFEQLALK  175 (211)
Q Consensus       156 ~~Sa~~~~gv~~l~~~i~~~  175 (211)
                      +|||+++.|++++|+||.+.
T Consensus       170 ~~Sa~~~~gv~e~~~~l~~~  189 (190)
T cd00879         170 MCSVVKRQGYGEAFRWLSQY  189 (190)
T ss_pred             EeEecCCCChHHHHHHHHhh
Confidence            99999999999999999875

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]

Probab=99.96  E-value=8.3e-28  Score=161.03  Aligned_cols=164  Identities=24%  Similarity=0.381  Sum_probs=137.5

Q ss_pred             CCceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEE
Q 028300           10 SYDLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGI   89 (211)
Q Consensus        10 ~~~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~   89 (211)
                      ..+++++|.++|..||||||++++|.+...+...|+.|....+..    ...+++++||.+|+...+..|+.++.+.|++
T Consensus        12 ~kerE~riLiLGLdNsGKTti~~kl~~~~~~~i~pt~gf~Iktl~----~~~~~L~iwDvGGq~~lr~~W~nYfestdgl   87 (185)
T KOG0073|consen   12 LKEREVRILILGLDNSGKTTIVKKLLGEDTDTISPTLGFQIKTLE----YKGYTLNIWDVGGQKTLRSYWKNYFESTDGL   87 (185)
T ss_pred             hhhheeEEEEEecCCCCchhHHHHhcCCCccccCCccceeeEEEE----ecceEEEEEEcCCcchhHHHHHHhhhccCeE
Confidence            356799999999999999999999999988888899998887444    4778999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcc---cCH-HHHHHHHHHcCCeEEEeeccCCCcH
Q 028300           90 ILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERV---VSR-EEGIALAKEHGSLFLECSAKTRENV  165 (211)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~---v~~-~~~~~~~~~~~~~~~~~Sa~~~~gv  165 (211)
                      |+|+|.+|+..+++....+...+... ...+.|++|++||.|+...-.   +.. .....+++...++++.||+.+|+++
T Consensus        88 IwvvDssD~~r~~e~~~~L~~lL~ee-rlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tge~l  166 (185)
T KOG0073|consen   88 IWVVDSSDRMRMQECKQELTELLVEE-RLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHHWRLVKCSAVTGEDL  166 (185)
T ss_pred             EEEEECchHHHHHHHHHHHHHHHhhh-hhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccCceEEEEeccccccH
Confidence            99999999999999888666666533 456799999999999963321   111 1123444667789999999999999


Q ss_pred             HHHHHHHHHHHHh
Q 028300          166 EQCFEQLALKIME  178 (211)
Q Consensus       166 ~~l~~~i~~~~~~  178 (211)
                      .+-++|+...+.+
T Consensus       167 ~~gidWL~~~l~~  179 (185)
T KOG0073|consen  167 LEGIDWLCDDLMS  179 (185)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999999887

>cd04102 RabL3 RabL3 (Rab-like3) subfamily

Probab=99.96  E-value=9.8e-28  Score=173.53  Aligned_cols=147  Identities=28%  Similarity=0.427  Sum_probs=123.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEEC-----CEEEEEEEEeCCChhhhccchhhhccCCcE
Q 028300           15 FKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVA-----GKRLKLTIWDTAGQERFRTLTSSYYRGAQG   88 (211)
Q Consensus        15 ~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~   88 (211)
                      +||+++|.+|+|||||++++..+.| ..+.+|.+.++....+.+.     +..+.+.+||++|++.|..++..+++++|+
T Consensus         1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~   80 (202)
T cd04102           1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG   80 (202)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence            5899999999999999999999988 6677888877776666653     467899999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHhhhhc------------------cCCCccEEEEeecCCCCCCcccCHHH----HHHH
Q 028300           89 IILVYDVTRRETFTNLSDVWAKEVDLYS------------------TNQDCVKMLVGNKVDRDSERVVSREE----GIAL  146 (211)
Q Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~------------------~~~~~p~viv~nK~Dl~~~~~v~~~~----~~~~  146 (211)
                      +|+|||+++.+|++++.. |...+....                  ...++|++||+||.|+.+++.+....    ...+
T Consensus        81 iIlVyDvtn~~Sf~~l~~-W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~~~~~~~~~~i  159 (202)
T cd04102          81 IILVHDLTNRKSSQNLQR-WSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSGNLVLTARGFV  159 (202)
T ss_pred             EEEEEECcChHHHHHHHH-HHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcccchHHHhhHhhhH
Confidence            999999999999999987 888875431                  13478999999999997665555442    3456


Q ss_pred             HHHcCCeEEEeeccCC
Q 028300          147 AKEHGSLFLECSAKTR  162 (211)
Q Consensus       147 ~~~~~~~~~~~Sa~~~  162 (211)
                      +++.+++.++.++.++
T Consensus       160 a~~~~~~~i~~~c~~~  175 (202)
T cd04102         160 AEQGNAEEINLNCTNG  175 (202)
T ss_pred             HHhcCCceEEEecCCc
Confidence            7889999999998875

RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.

>cd04157 Arl6 Arl6 subfamily

Probab=99.96  E-value=1.4e-28  Score=173.28  Aligned_cols=152  Identities=22%  Similarity=0.331  Sum_probs=115.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCCC--CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEEEE
Q 028300           16 KILLIGDSGVGKSSLLVSFISSSV--DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVY   93 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (211)
                      +|+++|++|||||||+++|.+..+  ..+.++.+.....    +....+.+.+||+||+..+..++..+++++|++++|+
T Consensus         1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~~----~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~   76 (162)
T cd04157           1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVES----FEKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVI   76 (162)
T ss_pred             CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceEE----EEECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEE
Confidence            589999999999999999998753  4566777755432    2234678999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHhhhhc--cCCCccEEEEeecCCCCCCcccCHHHHHHHHH-----HcCCeEEEeeccCCCcHH
Q 028300           94 DVTRRETFTNLSDVWAKEVDLYS--TNQDCVKMLVGNKVDRDSERVVSREEGIALAK-----EHGSLFLECSAKTRENVE  166 (211)
Q Consensus        94 d~~~~~s~~~~~~~~~~~~~~~~--~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa~~~~gv~  166 (211)
                      |+++..++..... |...+....  ...++|+++|+||+|+.+..  ...+......     ...++++++||++|.|++
T Consensus        77 D~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~--~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~  153 (162)
T cd04157          77 DSSDRLRLVVVKD-ELELLLNHPDIKHRRVPILFFANKMDLPDAL--TAVKITQLLGLENIKDKPWHIFASNALTGEGLD  153 (162)
T ss_pred             eCCcHHHHHHHHH-HHHHHHcCcccccCCCCEEEEEeCccccCCC--CHHHHHHHhCCccccCceEEEEEeeCCCCCchH
Confidence            9999998887776 444442221  23579999999999986532  2222222111     123458999999999999


Q ss_pred             HHHHHHHH
Q 028300          167 QCFEQLAL  174 (211)
Q Consensus       167 ~l~~~i~~  174 (211)
                      ++|++|.+
T Consensus       154 ~~~~~l~~  161 (162)
T cd04157         154 EGVQWLQA  161 (162)
T ss_pred             HHHHHHhc
Confidence            99999864

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=99.96  E-value=3.3e-28  Score=171.05  Aligned_cols=153  Identities=27%  Similarity=0.419  Sum_probs=117.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEEEEEC
Q 028300           16 KILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDV   95 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~   95 (211)
                      +|+++|++|||||||++++....+....++.+.+...  +.. .....+.+||+||+..+...+..++..+|++++|+|+
T Consensus         1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~~~t~~~~~~~--~~~-~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~   77 (160)
T cd04156           1 QVLLLGLDSAGKSTLLYKLKHAELVTTIPTVGFNVEM--LQL-EKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDS   77 (160)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCcccccCccCcceEE--EEe-CCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEEC
Confidence            5899999999999999999999886666776655432  222 2457899999999999888888899999999999999


Q ss_pred             CChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHH------HHcCCeEEEeeccCCCcHHHHH
Q 028300           96 TRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALA------KEHGSLFLECSAKTRENVEQCF  169 (211)
Q Consensus        96 ~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~------~~~~~~~~~~Sa~~~~gv~~l~  169 (211)
                      +++.++......+...+... ...+.|+++|+||+|+....  ...+.....      ...+++++++||++|.|++++|
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~  154 (160)
T cd04156          78 SDEARLDESQKELKHILKNE-HIKGVPVVLLANKQDLPGAL--TAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAF  154 (160)
T ss_pred             CcHHHHHHHHHHHHHHHhch-hhcCCCEEEEEECcccccCc--CHHHHHHHcCCcccCCCCcEEEEecccccCCChHHHH
Confidence            99998888877444444322 33589999999999985432  222322211      1134579999999999999999


Q ss_pred             HHHHH
Q 028300          170 EQLAL  174 (211)
Q Consensus       170 ~~i~~  174 (211)
                      ++|.+
T Consensus       155 ~~i~~  159 (160)
T cd04156         155 RKLAS  159 (160)
T ss_pred             HHHhc
Confidence            99864

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=99.96  E-value=2.2e-28  Score=173.13  Aligned_cols=154  Identities=20%  Similarity=0.324  Sum_probs=117.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEEEEEC
Q 028300           16 KILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDV   95 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~   95 (211)
                      +|+++|++|||||||++++.+.....+.++.+....  .+..  ..+.+.+||+||+..++.++..+++++|++++|||+
T Consensus         1 ~i~~~G~~~~GKTsl~~~l~~~~~~~~~~t~g~~~~--~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~   76 (167)
T cd04161           1 TLLTVGLDNAGKTTLVSALQGEIPKKVAPTVGFTPT--KLRL--DKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDS   76 (167)
T ss_pred             CEEEECCCCCCHHHHHHHHhCCCCccccCcccceEE--EEEE--CCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEEC
Confidence            489999999999999999997733667777776543  3333  457899999999999999999999999999999999


Q ss_pred             CChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCH-HH---HHHHHHHc--CCeEEEeeccCC------C
Q 028300           96 TRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSR-EE---GIALAKEH--GSLFLECSAKTR------E  163 (211)
Q Consensus        96 ~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~-~~---~~~~~~~~--~~~~~~~Sa~~~------~  163 (211)
                      ++..++.++.. |+..+.......++|++||+||+|+........ ..   ...++...  .+.++++||++|      .
T Consensus        77 s~~~s~~~~~~-~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~  155 (167)
T cd04161          77 SDDDRVQEVKE-ILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDP  155 (167)
T ss_pred             CchhHHHHHHH-HHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEceeCCCCcccc
Confidence            99999999888 555544332345899999999999966542111 11   11222122  246888999998      8


Q ss_pred             cHHHHHHHHHH
Q 028300          164 NVEQCFEQLAL  174 (211)
Q Consensus       164 gv~~l~~~i~~  174 (211)
                      |+++.|+||.+
T Consensus       156 g~~~~~~wl~~  166 (167)
T cd04161         156 SIVEGLRWLLA  166 (167)
T ss_pred             CHHHHHHHHhc
Confidence            99999999975

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=99.96  E-value=4.7e-28  Score=169.98  Aligned_cols=152  Identities=27%  Similarity=0.406  Sum_probs=120.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEEEEEC
Q 028300           16 KILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDV   95 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~   95 (211)
                      ||+++|.+|||||||++++.+..+..+.++.+.+.....  +  ....+.+||+||+..+...+..++..+|++++|||+
T Consensus         1 ki~iiG~~~~GKssli~~~~~~~~~~~~~t~~~~~~~~~--~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~   76 (158)
T cd00878           1 RILILGLDGAGKTTILYKLKLGEVVTTIPTIGFNVETVE--Y--KNVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDS   76 (158)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCCCCCCCCcCcceEEEE--E--CCEEEEEEECCCChhhHHHHHHHhccCCEEEEEEEC
Confidence            689999999999999999999887777777776655332  2  357899999999999988899999999999999999


Q ss_pred             CChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHH-----HcCCeEEEeeccCCCcHHHHHH
Q 028300           96 TRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAK-----EHGSLFLECSAKTRENVEQCFE  170 (211)
Q Consensus        96 ~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa~~~~gv~~l~~  170 (211)
                      ++++++......+....... ...+.|+++|+||+|+....  ..++..+...     ...++++++||++|.|++++|+
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~-~~~~~piiiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~  153 (158)
T cd00878          77 SDRERIEEAKEELHKLLNEE-ELKGVPLLIFANKQDLPGAL--SVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLD  153 (158)
T ss_pred             CCHHHHHHHHHHHHHHHhCc-ccCCCcEEEEeeccCCcccc--CHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHH
Confidence            99999999888444444433 35689999999999986543  2223322222     2346799999999999999999


Q ss_pred             HHHH
Q 028300          171 QLAL  174 (211)
Q Consensus       171 ~i~~  174 (211)
                      +|..
T Consensus       154 ~l~~  157 (158)
T cd00878         154 WLLQ  157 (158)
T ss_pred             HHhh
Confidence            9875

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=99.96  E-value=1.2e-27  Score=171.92  Aligned_cols=158  Identities=22%  Similarity=0.287  Sum_probs=122.3

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEE
Q 028300           11 YDLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGII   90 (211)
Q Consensus        11 ~~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (211)
                      ..+.++|+++|.+|||||||++++.+..+..+.++.+.+...  +..  .++.+.+||+||+..+...+..+++++|+++
T Consensus        14 ~~~~~~i~ivG~~~~GKTsli~~l~~~~~~~~~~t~~~~~~~--~~~--~~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii   89 (184)
T smart00178       14 WNKHAKILFLGLDNAGKTTLLHMLKNDRLAQHQPTQHPTSEE--LAI--GNIKFTTFDLGGHQQARRLWKDYFPEVNGIV   89 (184)
T ss_pred             ccccCEEEEECCCCCCHHHHHHHHhcCCCcccCCccccceEE--EEE--CCEEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence            356799999999999999999999988776666666554432  222  3578999999999998888999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHH------------cCCeEEEee
Q 028300           91 LVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKE------------HGSLFLECS  158 (211)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~------------~~~~~~~~S  158 (211)
                      +|+|+++++++......+...+... ...++|+++|+||+|+..  .+..++.......            ....++++|
T Consensus        90 ~vvD~~~~~~~~~~~~~l~~l~~~~-~~~~~piliv~NK~Dl~~--~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~S  166 (184)
T smart00178       90 YLVDAYDKERFAESKRELDALLSDE-ELATVPFLILGNKIDAPY--AASEDELRYALGLTNTTGSKGKVGVRPLEVFMCS  166 (184)
T ss_pred             EEEECCcHHHHHHHHHHHHHHHcCh-hhcCCCEEEEEeCccccC--CCCHHHHHHHcCCCcccccccccCCceeEEEEee
Confidence            9999999999888877444444322 345789999999999853  3444554433311            123499999


Q ss_pred             ccCCCcHHHHHHHHHHH
Q 028300          159 AKTRENVEQCFEQLALK  175 (211)
Q Consensus       159 a~~~~gv~~l~~~i~~~  175 (211)
                      |+++.|++++++||.+.
T Consensus       167 a~~~~g~~~~~~wl~~~  183 (184)
T smart00178      167 VVRRMGYGEGFKWLSQY  183 (184)
T ss_pred             cccCCChHHHHHHHHhh
Confidence            99999999999999765

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>PTZ00099 rab6; Provisional

Probab=99.95  E-value=1.3e-26  Score=164.81  Aligned_cols=143  Identities=38%  Similarity=0.637  Sum_probs=125.4

Q ss_pred             CC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhc
Q 028300           38 SV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYS  116 (211)
Q Consensus        38 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~  116 (211)
                      .| +.+.+|.+.++....+.+++..+.+.||||+|++.+..++..+++.+|++|+|||++++++|+.+.. |+..+... 
T Consensus         4 ~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~-w~~~i~~~-   81 (176)
T PTZ00099          4 TFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTK-WIQDILNE-   81 (176)
T ss_pred             CcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHH-HHHHHHHh-
Confidence            45 5678899999988888888999999999999999999999999999999999999999999999987 77776544 


Q ss_pred             cCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHHHHHHHHHHhccch
Q 028300          117 TNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIMEVPSL  182 (211)
Q Consensus       117 ~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~~~~~~~~  182 (211)
                      ...++|+++|+||+|+...+.+..++...++..+++.|+++||++|.||+++|++|.+.+.+....
T Consensus        82 ~~~~~piilVgNK~DL~~~~~v~~~e~~~~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~~~~~  147 (176)
T PTZ00099         82 RGKDVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPNLDNS  147 (176)
T ss_pred             cCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHhcccc
Confidence            235789999999999977677888888888888888999999999999999999999998776544

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=99.95  E-value=2.9e-27  Score=167.36  Aligned_cols=152  Identities=27%  Similarity=0.421  Sum_probs=114.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCCC-------CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcE
Q 028300           16 KILLIGDSGVGKSSLLVSFISSSV-------DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQG   88 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~   88 (211)
                      +|+++|++|+|||||++++.+...       ..+.++.+....  .+.+  ....+.+||+||+..+...+..+++.+|+
T Consensus         1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~--~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~   76 (167)
T cd04160           1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIG--TIEV--GNARLKFWDLGGQESLRSLWDKYYAECHA   76 (167)
T ss_pred             CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceE--EEEE--CCEEEEEEECCCChhhHHHHHHHhCCCCE
Confidence            589999999999999999976432       223344444443  2333  35789999999999999889999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHH-------cCCeEEEeeccC
Q 028300           89 IILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKE-------HGSLFLECSAKT  161 (211)
Q Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~-------~~~~~~~~Sa~~  161 (211)
                      +++|+|+++.+++......+...+. .....++|+++++||+|+...  ....+...+...       .+++++++||++
T Consensus        77 ~v~vvd~~~~~~~~~~~~~~~~~~~-~~~~~~~p~ilv~NK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  153 (167)
T cd04160          77 IIYVIDSTDRERFEESKSALEKVLR-NEALEGVPLLILANKQDLPDA--LSVEEIKEVFQDKAEEIGRRDCLVLPVSALE  153 (167)
T ss_pred             EEEEEECchHHHHHHHHHHHHHHHh-ChhhcCCCEEEEEEccccccC--CCHHHHHHHhccccccccCCceEEEEeeCCC
Confidence            9999999999888888774444443 223468999999999998553  333333333322       245799999999


Q ss_pred             CCcHHHHHHHHHH
Q 028300          162 RENVEQCFEQLAL  174 (211)
Q Consensus       162 ~~gv~~l~~~i~~  174 (211)
                      |.|++++++||.+
T Consensus       154 g~gv~e~~~~l~~  166 (167)
T cd04160         154 GTGVREGIEWLVE  166 (167)
T ss_pred             CcCHHHHHHHHhc
Confidence            9999999999865

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>cd04159 Arl10_like Arl10-like subfamily

Probab=99.94  E-value=3.1e-26  Score=160.37  Aligned_cols=151  Identities=25%  Similarity=0.416  Sum_probs=116.6

Q ss_pred             EEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEEEEEC
Q 028300           17 ILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDV   95 (211)
Q Consensus        17 I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~   95 (211)
                      |+++|++|+|||||++++.+.++ ..+.++.+.....  ...  ..+.+.+||+||+..+...+..++..+|++++|+|+
T Consensus         2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~--~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~   77 (159)
T cd04159           2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRK--VTK--GNVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDA   77 (159)
T ss_pred             EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEE--EEE--CCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEEC
Confidence            79999999999999999999988 5666766655542  222  337899999999999998899999999999999999


Q ss_pred             CChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHH-----HHcCCeEEEeeccCCCcHHHHHH
Q 028300           96 TRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALA-----KEHGSLFLECSAKTRENVEQCFE  170 (211)
Q Consensus        96 ~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~~~gv~~l~~  170 (211)
                      ++..++......+...+.. ....++|+++|+||+|+.+....  .......     ....++++++|++++.|++++++
T Consensus        78 ~~~~~~~~~~~~~~~~~~~-~~~~~~p~iiv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  154 (159)
T cd04159          78 ADRTALEAAKNELHDLLEK-PSLEGIPLLVLGNKNDLPGALSV--DELIEQMNLKSITDREVSCYSISCKEKTNIDIVLD  154 (159)
T ss_pred             CCHHHHHHHHHHHHHHHcC-hhhcCCCEEEEEeCccccCCcCH--HHHHHHhCcccccCCceEEEEEEeccCCChHHHHH
Confidence            9998888877744444432 23468899999999998654322  2221111     12335799999999999999999


Q ss_pred             HHHH
Q 028300          171 QLAL  174 (211)
Q Consensus       171 ~i~~  174 (211)
                      +|.+
T Consensus       155 ~l~~  158 (159)
T cd04159         155 WLIK  158 (159)
T ss_pred             HHhh
Confidence            9875

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>cd04155 Arl3 Arl3 subfamily

Probab=99.94  E-value=5.1e-26  Score=161.94  Aligned_cols=156  Identities=22%  Similarity=0.354  Sum_probs=118.5

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEE
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIIL   91 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   91 (211)
                      ...++|+++|++|+|||||++++.+..+..+.++.+.+...  +...  +..+.+||++|+..+...+..+++++|++++
T Consensus        12 ~~~~~v~i~G~~g~GKStLl~~l~~~~~~~~~~t~g~~~~~--i~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~   87 (173)
T cd04155          12 SEEPRILILGLDNAGKTTILKQLASEDISHITPTQGFNIKT--VQSD--GFKLNVWDIGGQRAIRPYWRNYFENTDCLIY   87 (173)
T ss_pred             CCccEEEEEccCCCCHHHHHHHHhcCCCcccCCCCCcceEE--EEEC--CEEEEEEECCCCHHHHHHHHHHhcCCCEEEE
Confidence            45899999999999999999999998776677777755442  2333  4678999999998888888888999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHc-----CCeEEEeeccCCCcHH
Q 028300           92 VYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEH-----GSLFLECSAKTRENVE  166 (211)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~-----~~~~~~~Sa~~~~gv~  166 (211)
                      |+|+++..++......+...+... ...++|+++++||+|+.+...  .++........     ..+++++||++|.|++
T Consensus        88 v~D~~~~~~~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~~~~--~~~i~~~l~~~~~~~~~~~~~~~Sa~~~~gi~  164 (173)
T cd04155          88 VIDSADKKRLEEAGAELVELLEEE-KLAGVPVLVFANKQDLATAAP--AEEIAEALNLHDLRDRTWHIQACSAKTGEGLQ  164 (173)
T ss_pred             EEeCCCHHHHHHHHHHHHHHHhCh-hhcCCCEEEEEECCCCccCCC--HHHHHHHcCCcccCCCeEEEEEeECCCCCCHH
Confidence            999999888888777444444432 345799999999999854332  22222111111     1247899999999999


Q ss_pred             HHHHHHHH
Q 028300          167 QCFEQLAL  174 (211)
Q Consensus       167 ~l~~~i~~  174 (211)
                      ++|+||.+
T Consensus       165 ~~~~~l~~  172 (173)
T cd04155         165 EGMNWVCK  172 (173)
T ss_pred             HHHHHHhc
Confidence            99999865

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=1.4e-26  Score=159.14  Aligned_cols=167  Identities=20%  Similarity=0.333  Sum_probs=140.5

Q ss_pred             CCCCceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCc
Q 028300            8 SNSYDLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQ   87 (211)
Q Consensus         8 ~~~~~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d   87 (211)
                      .....++.+|+++|.-++||||++++|..+++-...||.|.......+.    .+.+.+||.+|+..++.+|..++.+.+
T Consensus        11 ~~~~~~e~~IlmlGLD~AGKTTILykLk~~E~vttvPTiGfnVE~v~yk----n~~f~vWDvGGq~k~R~lW~~Y~~~t~   86 (181)
T KOG0070|consen   11 GLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTVPTIGFNVETVEYK----NISFTVWDVGGQEKLRPLWKHYFQNTQ   86 (181)
T ss_pred             hccCcceEEEEEEeccCCCceeeeEeeccCCcccCCCccccceeEEEEc----ceEEEEEecCCCcccccchhhhccCCc
Confidence            3456789999999999999999999999999977799999999866663    789999999999999999999999999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcc---cCHHHHHHHHHHcCCeEEEeeccCCCc
Q 028300           88 GIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERV---VSREEGIALAKEHGSLFLECSAKTREN  164 (211)
Q Consensus        88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~---v~~~~~~~~~~~~~~~~~~~Sa~~~~g  164 (211)
                      ++|||+|.+|.+.+.++...+..++.+. ...+.|+++.+||.|++..-.   +.............+.+..++|.+|+|
T Consensus        87 ~lIfVvDS~Dr~Ri~eak~eL~~~l~~~-~l~~~~llv~aNKqD~~~als~~ei~~~L~l~~l~~~~w~iq~~~a~~G~G  165 (181)
T KOG0070|consen   87 GLIFVVDSSDRERIEEAKEELHRMLAEP-ELRNAPLLVFANKQDLPGALSAAEITNKLGLHSLRSRNWHIQSTCAISGEG  165 (181)
T ss_pred             EEEEEEeCCcHHHHHHHHHHHHHHHcCc-ccCCceEEEEechhhccccCCHHHHHhHhhhhccCCCCcEEeecccccccc
Confidence            9999999999999999999788887755 467999999999999865533   222222222233456789999999999


Q ss_pred             HHHHHHHHHHHHHhc
Q 028300          165 VEQCFEQLALKIMEV  179 (211)
Q Consensus       165 v~~l~~~i~~~~~~~  179 (211)
                      +.+.++|+.+.+.+.
T Consensus       166 L~egl~wl~~~~~~~  180 (181)
T KOG0070|consen  166 LYEGLDWLSNNLKKR  180 (181)
T ss_pred             HHHHHHHHHHHHhcc
Confidence            999999999987654

>PLN00023 GTP-binding protein; Provisional

Probab=99.94  E-value=2.5e-25  Score=168.55  Aligned_cols=143  Identities=29%  Similarity=0.484  Sum_probs=119.4

Q ss_pred             CCCceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEEC-------------CEEEEEEEEeCCChhh
Q 028300            9 NSYDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVA-------------GKRLKLTIWDTAGQER   74 (211)
Q Consensus         9 ~~~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~-------------~~~~~~~l~D~~g~~~   74 (211)
                      ......+||+|+|..|||||||+++|..+.+ ..+.++.+.++....+.+.             +..+.+.|||++|++.
T Consensus        16 ~~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqEr   95 (334)
T PLN00023         16 GPPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHER   95 (334)
T ss_pred             CCCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChh
Confidence            3456679999999999999999999999988 5677888888776666654             2468899999999999


Q ss_pred             hccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhcc-----------CCCccEEEEeecCCCCCCc---c---
Q 028300           75 FRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYST-----------NQDCVKMLVGNKVDRDSER---V---  137 (211)
Q Consensus        75 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-----------~~~~p~viv~nK~Dl~~~~---~---  137 (211)
                      |..++..+++++|++|+|||+++..+++++.. |+..+.....           ..++|++||+||+|+...+   .   
T Consensus        96 frsL~~~yyr~AdgiILVyDITdr~SFenL~k-Wl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~r~~s~  174 (334)
T PLN00023         96 YKDCRSLFYSQINGVIFVHDLSQRRTKTSLQK-WASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGTRGSSG  174 (334)
T ss_pred             hhhhhHHhccCCCEEEEEEeCCCHHHHHHHHH-HHHHHHHhcccccccccccccCCCCcEEEEEECcccccccccccccc
Confidence            99999999999999999999999999999988 8888876521           1358999999999996543   2   


Q ss_pred             cCHHHHHHHHHHcCC
Q 028300          138 VSREEGIALAKEHGS  152 (211)
Q Consensus       138 v~~~~~~~~~~~~~~  152 (211)
                      +..+++++++..+++
T Consensus       175 ~~~e~a~~~A~~~g~  189 (334)
T PLN00023        175 NLVDAARQWVEKQGL  189 (334)
T ss_pred             ccHHHHHHHHHHcCC
Confidence            357888999988774

>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=99.94  E-value=1.3e-27  Score=162.50  Aligned_cols=173  Identities=31%  Similarity=0.510  Sum_probs=159.4

Q ss_pred             CCCCCceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccC
Q 028300            7 QSNSYDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRG   85 (211)
Q Consensus         7 ~~~~~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~   85 (211)
                      .....+..+|++|+|..++||||+|.+++.+-| ..+..+.++++....+.+..+++.+.+||++|+++|+....+++++
T Consensus        13 ~e~d~e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrg   92 (246)
T KOG4252|consen   13 DETDYERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRG   92 (246)
T ss_pred             CchhhhhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhcc
Confidence            345678889999999999999999999999988 7888999999988888888888999999999999999999999999


Q ss_pred             CcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcH
Q 028300           86 AQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENV  165 (211)
Q Consensus        86 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv  165 (211)
                      +.+.++||+.+|..||+.... |.+.+..  +...+|.++|-||+|+.+...+...+.+.+++.+...++.+|++...++
T Consensus        93 aqa~vLVFSTTDr~SFea~~~-w~~kv~~--e~~~IPtV~vqNKIDlveds~~~~~evE~lak~l~~RlyRtSvked~NV  169 (246)
T KOG4252|consen   93 AQASVLVFSTTDRYSFEATLE-WYNKVQK--ETERIPTVFVQNKIDLVEDSQMDKGEVEGLAKKLHKRLYRTSVKEDFNV  169 (246)
T ss_pred             ccceEEEEecccHHHHHHHHH-HHHHHHH--HhccCCeEEeeccchhhHhhhcchHHHHHHHHHhhhhhhhhhhhhhhhh
Confidence            999999999999999999999 8888765  4779999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhccch
Q 028300          166 EQCFEQLALKIMEVPSL  182 (211)
Q Consensus       166 ~~l~~~i~~~~~~~~~~  182 (211)
                      ..+|..+.+.+......
T Consensus       170 ~~vF~YLaeK~~q~~kq  186 (246)
T KOG4252|consen  170 MHVFAYLAEKLTQQKKQ  186 (246)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999999988877654

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=99.94  E-value=2.2e-25  Score=157.86  Aligned_cols=156  Identities=17%  Similarity=0.133  Sum_probs=106.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhc---------cchhhhccC
Q 028300           15 FKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFR---------TLTSSYYRG   85 (211)
Q Consensus        15 ~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~---------~~~~~~~~~   85 (211)
                      .+|+++|.+|+|||||+++|.+..+.. .+..+++............+.+.+|||||.....         .........
T Consensus         1 ~~i~~~G~~~~GKssli~~l~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~   79 (168)
T cd01897           1 PTLVIAGYPNVGKSSLVNKLTRAKPEV-APYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHL   79 (168)
T ss_pred             CeEEEEcCCCCCHHHHHHHHhcCCCcc-CCCCCcccceeEEEEccCceEEEEEECCCcCCccccCCchHHHHHHHHHHhc
Confidence            379999999999999999999887632 1122222222222233345789999999974211         001111223


Q ss_pred             CcEEEEEEECCChhhH--HHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCC
Q 028300           86 AQGIILVYDVTRRETF--TNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRE  163 (211)
Q Consensus        86 ~d~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  163 (211)
                      +|++++|+|+++..++  +.... |...+...  ..+.|+++|+||+|+.....+..  ...+....+.+++++||+++.
T Consensus        80 ~d~~l~v~d~~~~~~~~~~~~~~-~~~~l~~~--~~~~pvilv~NK~Dl~~~~~~~~--~~~~~~~~~~~~~~~Sa~~~~  154 (168)
T cd01897          80 RAAVLFLFDPSETCGYSLEEQLS-LFEEIKPL--FKNKPVIVVLNKIDLLTFEDLSE--IEEEEELEGEEVLKISTLTEE  154 (168)
T ss_pred             cCcEEEEEeCCcccccchHHHHH-HHHHHHhh--cCcCCeEEEEEccccCchhhHHH--HHHhhhhccCceEEEEecccC
Confidence            6899999999987543  44444 66665533  24799999999999965544332  344445556789999999999


Q ss_pred             cHHHHHHHHHHHH
Q 028300          164 NVEQCFEQLALKI  176 (211)
Q Consensus       164 gv~~l~~~i~~~~  176 (211)
                      |++++|+++.+.+
T Consensus       155 gi~~l~~~l~~~~  167 (168)
T cd01897         155 GVDEVKNKACELL  167 (168)
T ss_pred             CHHHHHHHHHHHh
Confidence            9999999998876

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>cd01890 LepA LepA subfamily

Probab=99.94  E-value=1.9e-25  Score=159.85  Aligned_cols=153  Identities=22%  Similarity=0.276  Sum_probs=111.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCC-------C-CCCCC------ccceeeEEEEEEE-----CCEEEEEEEEeCCChhhhc
Q 028300           16 KILLIGDSGVGKSSLLVSFISSS-------V-DDLSP------TIGVDFKIKLLTV-----AGKRLKLTIWDTAGQERFR   76 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~~-------~-~~~~~------~~~~~~~~~~~~~-----~~~~~~~~l~D~~g~~~~~   76 (211)
                      +|+++|++++|||||+++|++..       + ..+.+      +.+.++.......     ++..+.+.||||||+.++.
T Consensus         2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~   81 (179)
T cd01890           2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS   81 (179)
T ss_pred             cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence            69999999999999999998742       1 11222      2234444333222     5567889999999999998


Q ss_pred             cchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCC---e
Q 028300           77 TLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGS---L  153 (211)
Q Consensus        77 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~---~  153 (211)
                      ..+..+++.+|++|+|||+++..+...... |....     ..++|+++|+||+|+.+..  ......++...+++   .
T Consensus        82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~-~~~~~-----~~~~~iiiv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~  153 (179)
T cd01890          82 YEVSRSLAACEGALLLVDATQGVEAQTLAN-FYLAL-----ENNLEIIPVINKIDLPSAD--PERVKQQIEDVLGLDPSE  153 (179)
T ss_pred             HHHHHHHHhcCeEEEEEECCCCccHhhHHH-HHHHH-----HcCCCEEEEEECCCCCcCC--HHHHHHHHHHHhCCCccc
Confidence            888889999999999999998766555544 43222     2478999999999985432  11222344455555   4


Q ss_pred             EEEeeccCCCcHHHHHHHHHHHH
Q 028300          154 FLECSAKTRENVEQCFEQLALKI  176 (211)
Q Consensus       154 ~~~~Sa~~~~gv~~l~~~i~~~~  176 (211)
                      ++++||++|.|++++|++|.+.+
T Consensus       154 ~~~~Sa~~g~gi~~l~~~l~~~~  176 (179)
T cd01890         154 AILVSAKTGLGVEDLLEAIVERI  176 (179)
T ss_pred             EEEeeccCCCCHHHHHHHHHhhC
Confidence            89999999999999999998764

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>cd01898 Obg Obg subfamily

Probab=99.94  E-value=1.3e-25  Score=159.29  Aligned_cols=157  Identities=21%  Similarity=0.220  Sum_probs=107.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEE-EEEEEEeCCChhh----hccchhhh---ccCCc
Q 028300           16 KILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKR-LKLTIWDTAGQER----FRTLTSSY---YRGAQ   87 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~D~~g~~~----~~~~~~~~---~~~~d   87 (211)
                      +|+++|.+|||||||+++|.+.... ....++++.......+.... ..+.+|||||..+    ...+...+   +..+|
T Consensus         2 ~v~ivG~~~~GKStl~~~l~~~~~~-v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d   80 (170)
T cd01898           2 DVGLVGLPNAGKSTLLSAISNAKPK-IADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEGKGLGHRFLRHIERTR   80 (170)
T ss_pred             CeEEECCCCCCHHHHHHHHhcCCcc-ccCCCccccCCcceEEEcCCCCeEEEEecCcccCcccccCCchHHHHHHHHhCC
Confidence            6899999999999999999976541 11111222211111121122 4799999999632    22233333   34699


Q ss_pred             EEEEEEECCCh-hhHHHHHHHHHHHhhhhcc-CCCccEEEEeecCCCCCCcccCHHHHHHHHHH-cCCeEEEeeccCCCc
Q 028300           88 GIILVYDVTRR-ETFTNLSDVWAKEVDLYST-NQDCVKMLVGNKVDRDSERVVSREEGIALAKE-HGSLFLECSAKTREN  164 (211)
Q Consensus        88 ~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~-~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~-~~~~~~~~Sa~~~~g  164 (211)
                      ++++|+|++++ ++++.+.. |.+.+..... ..++|+++|+||+|+.+...+. .....+... .+.+++++|++++.|
T Consensus        81 ~vi~v~D~~~~~~~~~~~~~-~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~Sa~~~~g  158 (170)
T cd01898          81 LLLHVIDLSGDDDPVEDYKT-IRNELELYNPELLEKPRIVVLNKIDLLDEEELF-ELLKELLKELWGKPVFPISALTGEG  158 (170)
T ss_pred             EEEEEEecCCCCCHHHHHHH-HHHHHHHhCccccccccEEEEEchhcCCchhhH-HHHHHHHhhCCCCCEEEEecCCCCC
Confidence            99999999998 78888776 7777654421 2478999999999986554432 333344444 367899999999999


Q ss_pred             HHHHHHHHHHH
Q 028300          165 VEQCFEQLALK  175 (211)
Q Consensus       165 v~~l~~~i~~~  175 (211)
                      ++++|++|.+.
T Consensus       159 i~~l~~~i~~~  169 (170)
T cd01898         159 LDELLRKLAEL  169 (170)
T ss_pred             HHHHHHHHHhh
Confidence            99999998865

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>PRK12299 obgE GTPase CgtA; Reviewed

Probab=99.94  E-value=2.6e-25  Score=172.02  Aligned_cols=163  Identities=18%  Similarity=0.149  Sum_probs=117.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECC-EEEEEEEEeCCChhhh----ccch---hhhccCCc
Q 028300           16 KILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAG-KRLKLTIWDTAGQERF----RTLT---SSYYRGAQ   87 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~D~~g~~~~----~~~~---~~~~~~~d   87 (211)
                      .|+++|.||||||||+++|.+.... ....++++.......+.. ....+.+||+||..+-    ..+.   ...++.++
T Consensus       160 dVglVG~PNaGKSTLln~ls~a~~~-va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a~  238 (335)
T PRK12299        160 DVGLVGLPNAGKSTLISAVSAAKPK-IADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKHIERTR  238 (335)
T ss_pred             CEEEEcCCCCCHHHHHHHHHcCCCc-cCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHHHHHHHHhhhcC
Confidence            6899999999999999999986542 222233333333322222 3356899999996421    1222   33456789


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHhhhhcc-CCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHH
Q 028300           88 GIILVYDVTRRETFTNLSDVWAKEVDLYST-NQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVE  166 (211)
Q Consensus        88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~  166 (211)
                      ++++|+|+++.++++++.. |..++..+.. ..++|+++|+||+|+.+...+.......+....+++++++||+++.|++
T Consensus       239 vlI~ViD~s~~~s~e~~~~-~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~~i~~iSAktg~GI~  317 (335)
T PRK12299        239 LLLHLVDIEAVDPVEDYKT-IRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELAALGGPVFLISAVTGEGLD  317 (335)
T ss_pred             EEEEEEcCCCCCCHHHHHH-HHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHHhcCCCEEEEEcCCCCCHH
Confidence            9999999998878888877 8888876522 2478999999999997655444344444445567889999999999999


Q ss_pred             HHHHHHHHHHHhcc
Q 028300          167 QCFEQLALKIMEVP  180 (211)
Q Consensus       167 ~l~~~i~~~~~~~~  180 (211)
                      +++++|.+.+.+.+
T Consensus       318 eL~~~L~~~l~~~~  331 (335)
T PRK12299        318 ELLRALWELLEEAR  331 (335)
T ss_pred             HHHHHHHHHHHhhh
Confidence            99999998876543

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=99.93  E-value=2.9e-24  Score=150.11  Aligned_cols=158  Identities=27%  Similarity=0.476  Sum_probs=120.8

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEEE
Q 028300           14 SFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILV   92 (211)
Q Consensus        14 ~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (211)
                      .+||+++|.+|+|||||++++....+ ..+.++.+.+.....+...+..+.+.+||+||+..+...+....++++.++++
T Consensus         1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~   80 (161)
T TIGR00231         1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV   80 (161)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence            47999999999999999999998886 44455556566555566666668899999999999888888889999999999


Q ss_pred             EECCCh-hhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHHHH
Q 028300           93 YDVTRR-ETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQ  171 (211)
Q Consensus        93 ~d~~~~-~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~  171 (211)
                      +|+... .++......|...+...... +.|+++++||.|+.... ........+......+++++||.++.|+.++|++
T Consensus        81 ~d~~~~v~~~~~~~~~~~~~~~~~~~~-~~p~ivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~sa~~~~gv~~~~~~  158 (161)
T TIGR00231        81 FDIVILVLDVEEILEKQTKEIIHHAES-NVPIILVGNKIDLRDAK-LKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFKI  158 (161)
T ss_pred             EEEeeeehhhhhHhHHHHHHHHHhccc-CCcEEEEEEcccCCcch-hhHHHHHHHhhccCCceEEeecCCCCCHHHHHHH
Confidence            998876 66666653355555544222 88999999999986543 2333333333334567999999999999999998


Q ss_pred             HH
Q 028300          172 LA  173 (211)
Q Consensus       172 i~  173 (211)
                      |.
T Consensus       159 l~  160 (161)
T TIGR00231       159 VE  160 (161)
T ss_pred             hh
Confidence            63

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>PRK15494 era GTPase Era; Provisional

Probab=99.93  E-value=8.6e-25  Score=170.18  Aligned_cols=167  Identities=22%  Similarity=0.298  Sum_probs=119.3

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhh-hccch-------hhhc
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER-FRTLT-------SSYY   83 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-~~~~~-------~~~~   83 (211)
                      .+.++|+++|.+|||||||+|+|.+..+..+.+..+++.......+...+.++.||||||..+ +..+.       ...+
T Consensus        50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l  129 (339)
T PRK15494         50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKGSLEKAMVRCAWSSL  129 (339)
T ss_pred             cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCcccHHHHHHHHHHHHh
Confidence            466799999999999999999999888765556555554433333333345789999999743 22211       2346


Q ss_pred             cCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcC--CeEEEeeccC
Q 028300           84 RGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHG--SLFLECSAKT  161 (211)
Q Consensus        84 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~--~~~~~~Sa~~  161 (211)
                      ..+|++++|+|..+  ++......|...+...    +.|.++|+||+|+.+.   ...+...+.....  ..++++||++
T Consensus       130 ~~aDvil~VvD~~~--s~~~~~~~il~~l~~~----~~p~IlViNKiDl~~~---~~~~~~~~l~~~~~~~~i~~iSAkt  200 (339)
T PRK15494        130 HSADLVLLIIDSLK--SFDDITHNILDKLRSL----NIVPIFLLNKIDIESK---YLNDIKAFLTENHPDSLLFPISALS  200 (339)
T ss_pred             hhCCEEEEEEECCC--CCCHHHHHHHHHHHhc----CCCEEEEEEhhcCccc---cHHHHHHHHHhcCCCcEEEEEeccC
Confidence            79999999999765  3444433355555432    5677899999998543   2334444444433  5799999999


Q ss_pred             CCcHHHHHHHHHHHHHhccchhcccc
Q 028300          162 RENVEQCFEQLALKIMEVPSLLEEGS  187 (211)
Q Consensus       162 ~~gv~~l~~~i~~~~~~~~~~~~~~~  187 (211)
                      |.|++++|++|.+.+.+....++...
T Consensus       201 g~gv~eL~~~L~~~l~~~~~~~~~~~  226 (339)
T PRK15494        201 GKNIDGLLEYITSKAKISPWLYAEDD  226 (339)
T ss_pred             ccCHHHHHHHHHHhCCCCCCCCCCCC
Confidence            99999999999999999988887764

>TIGR00436 era GTP-binding protein Era

Probab=99.93  E-value=1.1e-24  Score=165.25  Aligned_cols=163  Identities=18%  Similarity=0.095  Sum_probs=115.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhcc--------chhhhccCCc
Q 028300           16 KILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRT--------LTSSYYRGAQ   87 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~--------~~~~~~~~~d   87 (211)
                      +|+++|.+|||||||+|+|.+..+....+.++++.............++.||||||......        .....+..+|
T Consensus         2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~aD   81 (270)
T TIGR00436         2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGVD   81 (270)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhCC
Confidence            68999999999999999999988755555555554433322222345789999999643211        1344678999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCC-eEEEeeccCCCcHH
Q 028300           88 GIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGS-LFLECSAKTRENVE  166 (211)
Q Consensus        88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~gv~  166 (211)
                      ++++|+|+++..+..   ..+...+..    .+.|+++|+||+|+.+.... ......+....+. +++++||++|.|++
T Consensus        82 vvl~VvD~~~~~~~~---~~i~~~l~~----~~~p~ilV~NK~Dl~~~~~~-~~~~~~~~~~~~~~~v~~iSA~~g~gi~  153 (270)
T TIGR00436        82 LILFVVDSDQWNGDG---EFVLTKLQN----LKRPVVLTRNKLDNKFKDKL-LPLIDKYAILEDFKDIVPISALTGDNTS  153 (270)
T ss_pred             EEEEEEECCCCCchH---HHHHHHHHh----cCCCEEEEEECeeCCCHHHH-HHHHHHHHhhcCCCceEEEecCCCCCHH
Confidence            999999999876654   224444432    47899999999998643221 2223333333444 79999999999999


Q ss_pred             HHHHHHHHHHHhccchhccc
Q 028300          167 QCFEQLALKIMEVPSLLEEG  186 (211)
Q Consensus       167 ~l~~~i~~~~~~~~~~~~~~  186 (211)
                      +++++|.+.+.+....++..
T Consensus       154 ~L~~~l~~~l~~~~~~~~~~  173 (270)
T TIGR00436       154 FLAAFIEVHLPEGPFRYPED  173 (270)
T ss_pred             HHHHHHHHhCCCCCCCCCCc
Confidence            99999999988877766554

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>cd01878 HflX HflX subfamily

Probab=99.93  E-value=1.3e-24  Score=158.65  Aligned_cols=156  Identities=20%  Similarity=0.184  Sum_probs=109.2

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhh---------hccchhh
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER---------FRTLTSS   81 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~---------~~~~~~~   81 (211)
                      +..++|+++|++|||||||++++.+..+ ....+..........+.+.+ ...+.+||+||..+         +... ..
T Consensus        39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~i~Dt~G~~~~~~~~~~~~~~~~-~~  116 (204)
T cd01878          39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPD-GREVLLTDTVGFIRDLPHQLVEAFRST-LE  116 (204)
T ss_pred             cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecC-CceEEEeCCCccccCCCHHHHHHHHHH-HH
Confidence            4468999999999999999999998764 22111212222222333333 23789999999632         1111 12


Q ss_pred             hccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccC
Q 028300           82 YYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKT  161 (211)
Q Consensus        82 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~  161 (211)
                      .+..+|++++|+|++++.++..... |...+... ...++|+++|+||+|+.+.....     ......+.+++++||++
T Consensus       117 ~~~~~d~ii~v~D~~~~~~~~~~~~-~~~~l~~~-~~~~~~viiV~NK~Dl~~~~~~~-----~~~~~~~~~~~~~Sa~~  189 (204)
T cd01878         117 EVAEADLLLHVVDASDPDYEEQIET-VEKVLKEL-GAEDIPMILVLNKIDLLDDEELE-----ERLEAGRPDAVFISAKT  189 (204)
T ss_pred             HHhcCCeEEEEEECCCCChhhHHHH-HHHHHHHc-CcCCCCEEEEEEccccCChHHHH-----HHhhcCCCceEEEEcCC
Confidence            3568999999999999888777655 66666544 33578999999999986543321     23344567899999999


Q ss_pred             CCcHHHHHHHHHHHH
Q 028300          162 RENVEQCFEQLALKI  176 (211)
Q Consensus       162 ~~gv~~l~~~i~~~~  176 (211)
                      +.|+++++++|.+.+
T Consensus       190 ~~gi~~l~~~L~~~~  204 (204)
T cd01878         190 GEGLDELLEAIEELL  204 (204)
T ss_pred             CCCHHHHHHHHHhhC
Confidence            999999999987753

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=99.93  E-value=7.3e-25  Score=151.09  Aligned_cols=134  Identities=22%  Similarity=0.225  Sum_probs=98.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChh-----hhccchhhhccCCcEEE
Q 028300           16 KILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQE-----RFRTLTSSYYRGAQGII   90 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~-----~~~~~~~~~~~~~d~~i   90 (211)
                      ||+++|++|+|||||+++|.+..+. +.++.+.+       +.     -.+||+||..     .+..+.. .++++|+++
T Consensus         2 kv~liG~~~vGKSsL~~~l~~~~~~-~~~t~~~~-------~~-----~~~iDt~G~~~~~~~~~~~~~~-~~~~ad~vi   67 (142)
T TIGR02528         2 RIMFIGSVGCGKTTLTQALQGEEIL-YKKTQAVE-------YN-----DGAIDTPGEYVENRRLYSALIV-TAADADVIA   67 (142)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCccc-cccceeEE-------Ec-----CeeecCchhhhhhHHHHHHHHH-HhhcCCEEE
Confidence            8999999999999999999987652 22222211       11     1689999972     3444333 478999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCC-eEEEeeccCCCcHHHHH
Q 028300           91 LVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGS-LFLECSAKTRENVEQCF  169 (211)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~gv~~l~  169 (211)
                      +|||++++.++... . |....       ..|+++|+||+|+.+ .....++..+++...+. +++++||+++.|++++|
T Consensus        68 lv~d~~~~~s~~~~-~-~~~~~-------~~p~ilv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  137 (142)
T TIGR02528        68 LVQSATDPESRFPP-G-FASIF-------VKPVIGLVTKIDLAE-ADVDIERAKELLETAGAEPIFEISSVDEQGLEALV  137 (142)
T ss_pred             EEecCCCCCcCCCh-h-HHHhc-------cCCeEEEEEeeccCC-cccCHHHHHHHHHHcCCCcEEEEecCCCCCHHHHH
Confidence            99999999887552 2 43321       249999999999864 33455566666777665 79999999999999999


Q ss_pred             HHHH
Q 028300          170 EQLA  173 (211)
Q Consensus       170 ~~i~  173 (211)
                      +++.
T Consensus       138 ~~l~  141 (142)
T TIGR02528       138 DYLN  141 (142)
T ss_pred             HHHh
Confidence            9874

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=99.92  E-value=1.8e-23  Score=154.29  Aligned_cols=169  Identities=38%  Similarity=0.582  Sum_probs=135.2

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEE
Q 028300           13 LSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIIL   91 (211)
Q Consensus        13 ~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   91 (211)
                      ..+||+++|++|||||||+++|.++.+ ..+.++.+..+...........+.+.+||++|+.+++.++..++..++++++
T Consensus         4 ~~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~   83 (219)
T COG1100           4 KEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILI   83 (219)
T ss_pred             ceEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEE
Confidence            349999999999999999999999998 5566777777776666665558899999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCc------------ccCHHHHHHHHHHc---CCeEEE
Q 028300           92 VYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSER------------VVSREEGIALAKEH---GSLFLE  156 (211)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~------------~v~~~~~~~~~~~~---~~~~~~  156 (211)
                      ++|.++..++.++...|...+... .....|+++++||+|+....            ..............   ...+++
T Consensus        84 ~~d~~~~~~~~~~~~~~~~~l~~~-~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (219)
T COG1100          84 VYDSTLRESSDELTEEWLEELREL-APDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLE  162 (219)
T ss_pred             EEecccchhhhHHHHHHHHHHHHh-CCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeE
Confidence            999999777777777799888765 22579999999999997653            22222222222222   233899


Q ss_pred             eecc--CCCcHHHHHHHHHHHHHhccch
Q 028300          157 CSAK--TRENVEQCFEQLALKIMEVPSL  182 (211)
Q Consensus       157 ~Sa~--~~~gv~~l~~~i~~~~~~~~~~  182 (211)
                      +|+.  .+.++.++|.+++..+......
T Consensus       163 ~s~~~~~~~~v~~~~~~~~~~~~~~~~~  190 (219)
T COG1100         163 TSAKSLTGPNVNELFKELLRKLLEEIEK  190 (219)
T ss_pred             eecccCCCcCHHHHHHHHHHHHHHhhhh
Confidence            9999  9999999999999988765433

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=99.92  E-value=1.1e-23  Score=146.00  Aligned_cols=153  Identities=54%  Similarity=0.844  Sum_probs=119.7

Q ss_pred             EEcCCCCcHHHHHHHHhhCCC--CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEEEEECC
Q 028300           19 LIGDSGVGKSSLLVSFISSSV--DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVT   96 (211)
Q Consensus        19 v~G~~~~GKssli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~   96 (211)
                      ++|++|+|||||++++.+...  ....++. .+..............+.+||+||...+...+...++.+|++++|+|++
T Consensus         1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~   79 (157)
T cd00882           1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVT   79 (157)
T ss_pred             CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECc
Confidence            589999999999999998876  3333444 6666666666677889999999999888877788899999999999999


Q ss_pred             ChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHH-HHHHHHHcCCeEEEeeccCCCcHHHHHHHHH
Q 028300           97 RRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREE-GIALAKEHGSLFLECSAKTRENVEQCFEQLA  173 (211)
Q Consensus        97 ~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~-~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~  173 (211)
                      ++.++..... |...........++|+++++||+|+.......... .........++++++|+.++.|+++++++|.
T Consensus        80 ~~~~~~~~~~-~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~  156 (157)
T cd00882          80 DRESFENVKE-WLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLAKELGVPYFETSAKTGENVEELFEELA  156 (157)
T ss_pred             CHHHHHHHHH-HHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHHHhhcCCcEEEEecCCCCChHHHHHHHh
Confidence            9999888887 42222222356789999999999986554433322 3344445678899999999999999999975

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.92  E-value=5.1e-24  Score=139.30  Aligned_cols=159  Identities=21%  Similarity=0.384  Sum_probs=136.9

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEE
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIIL   91 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   91 (211)
                      .++.+|+++|..++||||++..|..+......||.|.....+++    ..+.+.+||.+|++..+.+|++++...-++|+
T Consensus        15 ~KE~~ilmlGLd~aGKTtiLyKLkl~~~~~~ipTvGFnvetVty----kN~kfNvwdvGGqd~iRplWrhYy~gtqglIF   90 (180)
T KOG0071|consen   15 NKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTY----KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF   90 (180)
T ss_pred             cccceEEEEecccCCceehhhHHhcCCCcccccccceeEEEEEe----eeeEEeeeeccCchhhhHHHHhhccCCceEEE
Confidence            35899999999999999999999999888999999998886665    56889999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHH-----HcCCeEEEeeccCCCcHH
Q 028300           92 VYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAK-----EHGSLFLECSAKTRENVE  166 (211)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa~~~~gv~  166 (211)
                      |+|..+.+.+++++..+...+... .....|++|.+||.|++.+.  ...++..+..     ...+-+.++++.++.|+.
T Consensus        91 V~Dsa~~dr~eeAr~ELh~ii~~~-em~~~~~LvlANkQDlp~A~--~pqei~d~leLe~~r~~~W~vqp~~a~~gdgL~  167 (180)
T KOG0071|consen   91 VVDSADRDRIEEARNELHRIINDR-EMRDAIILILANKQDLPDAM--KPQEIQDKLELERIRDRNWYVQPSCALSGDGLK  167 (180)
T ss_pred             EEeccchhhHHHHHHHHHHHhCCH-hhhcceEEEEecCccccccc--CHHHHHHHhccccccCCccEeeccccccchhHH
Confidence            999999999999999888888765 66789999999999997654  4444444433     234568999999999999


Q ss_pred             HHHHHHHHHHH
Q 028300          167 QCFEQLALKIM  177 (211)
Q Consensus       167 ~l~~~i~~~~~  177 (211)
                      +-|.|+.+.+.
T Consensus       168 eglswlsnn~~  178 (180)
T KOG0071|consen  168 EGLSWLSNNLK  178 (180)
T ss_pred             HHHHHHHhhcc
Confidence            99999988654

>cd04171 SelB SelB subfamily

Probab=99.92  E-value=9.6e-24  Score=148.76  Aligned_cols=150  Identities=22%  Similarity=0.202  Sum_probs=100.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCCC---C-CCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEE
Q 028300           16 KILLIGDSGVGKSSLLVSFISSSV---D-DLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIIL   91 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   91 (211)
                      .|+++|.+|+|||||+++|.+...   . ...+....+.....+.+.. ...+.+|||||+.++.......+..+|++++
T Consensus         2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~   80 (164)
T cd04171           2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVLL   80 (164)
T ss_pred             EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEEEE
Confidence            589999999999999999996432   1 1122222222222333331 4579999999998887666677889999999


Q ss_pred             EEECCC---hhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCccc--CHHHHHHHHHH---cCCeEEEeeccCCC
Q 028300           92 VYDVTR---RETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVV--SREEGIALAKE---HGSLFLECSAKTRE  163 (211)
Q Consensus        92 v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v--~~~~~~~~~~~---~~~~~~~~Sa~~~~  163 (211)
                      |+|+++   .++.+.+.     .+...   ...|+++++||+|+......  ...+..+....   .+.+++++||+++.
T Consensus        81 V~d~~~~~~~~~~~~~~-----~~~~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  152 (164)
T cd04171          81 VVAADEGIMPQTREHLE-----ILELL---GIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVTGE  152 (164)
T ss_pred             EEECCCCccHhHHHHHH-----HHHHh---CCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCCc
Confidence            999987   33333222     12211   23499999999998654211  12233333333   35789999999999


Q ss_pred             cHHHHHHHHHH
Q 028300          164 NVEQCFEQLAL  174 (211)
Q Consensus       164 gv~~l~~~i~~  174 (211)
                      |++++++.+..
T Consensus       153 ~v~~l~~~l~~  163 (164)
T cd04171         153 GIEELKEYLDE  163 (164)
T ss_pred             CHHHHHHHHhh
Confidence            99999998754

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=99.92  E-value=4.5e-25  Score=151.73  Aligned_cols=148  Identities=20%  Similarity=0.235  Sum_probs=102.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhh------ccchhhhc--cCC
Q 028300           15 FKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERF------RTLTSSYY--RGA   86 (211)
Q Consensus        15 ~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~------~~~~~~~~--~~~   86 (211)
                      ++|+++|.||+|||||+|+|.+... .....+|++.......+...+..+.++|+||....      ......++  .+.
T Consensus         1 i~ialvG~PNvGKStLfN~Ltg~~~-~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~   79 (156)
T PF02421_consen    1 IRIALVGNPNVGKSTLFNALTGAKQ-KVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEEERVARDYLLSEKP   79 (156)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHTTSE-EEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHHHTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCc-eecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcHHHHHHHHHhhcCC
Confidence            6899999999999999999999884 34455676666665555434477899999994222      22233333  689


Q ss_pred             cEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHH
Q 028300           87 QGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVE  166 (211)
Q Consensus        87 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~  166 (211)
                      |++++|+|++..+   .-.. +...+..    .++|+++++||+|+.....+.. +...+.+.+++|++.+||+++.|++
T Consensus        80 D~ii~VvDa~~l~---r~l~-l~~ql~e----~g~P~vvvlN~~D~a~~~g~~i-d~~~Ls~~Lg~pvi~~sa~~~~g~~  150 (156)
T PF02421_consen   80 DLIIVVVDATNLE---RNLY-LTLQLLE----LGIPVVVVLNKMDEAERKGIEI-DAEKLSERLGVPVIPVSARTGEGID  150 (156)
T ss_dssp             SEEEEEEEGGGHH---HHHH-HHHHHHH----TTSSEEEEEETHHHHHHTTEEE--HHHHHHHHTS-EEEEBTTTTBTHH
T ss_pred             CEEEEECCCCCHH---HHHH-HHHHHHH----cCCCEEEEEeCHHHHHHcCCEE-CHHHHHHHhCCCEEEEEeCCCcCHH
Confidence            9999999999743   2232 3333332    3899999999999865544332 2456677789999999999999999


Q ss_pred             HHHHHH
Q 028300          167 QCFEQL  172 (211)
Q Consensus       167 ~l~~~i  172 (211)
                      ++++.|
T Consensus       151 ~L~~~I  156 (156)
T PF02421_consen  151 ELKDAI  156 (156)
T ss_dssp             HHHHHH
T ss_pred             HHHhhC
Confidence            998875

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>PRK04213 GTP-binding protein; Provisional

Probab=99.92  E-value=3.2e-24  Score=156.26  Aligned_cols=155  Identities=22%  Similarity=0.242  Sum_probs=103.2

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCC-----------hhhhccchh
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAG-----------QERFRTLTS   80 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g-----------~~~~~~~~~   80 (211)
                      ...++|+++|.+|+|||||+++|.+..+. ....+++++....+...    .+.+||+||           .+.++..+.
T Consensus         7 ~~~~~i~i~G~~~~GKSsLin~l~~~~~~-~~~~~~~t~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~   81 (201)
T PRK04213          7 DRKPEIVFVGRSNVGKSTLVRELTGKKVR-VGKRPGVTRKPNHYDWG----DFILTDLPGFGFMSGVPKEVQEKIKDEIV   81 (201)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCc-cCCCCceeeCceEEeec----ceEEEeCCccccccccCHHHHHHHHHHHH
Confidence            34689999999999999999999987763 22344555554444332    589999999           445555544


Q ss_pred             hhc----cCCcEEEEEEECCChhhHHH---------HHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHH
Q 028300           81 SYY----RGAQGIILVYDVTRRETFTN---------LSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALA  147 (211)
Q Consensus        81 ~~~----~~~d~~i~v~d~~~~~s~~~---------~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~  147 (211)
                      .++    ..++++++|+|.++...+..         ....+...+.    ..++|+++|+||+|+.+..   .+...++.
T Consensus        82 ~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~p~iiv~NK~Dl~~~~---~~~~~~~~  154 (201)
T PRK04213         82 RYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLR----ELGIPPIVAVNKMDKIKNR---DEVLDEIA  154 (201)
T ss_pred             HHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHH----HcCCCeEEEEECccccCcH---HHHHHHHH
Confidence            444    34578888888765322100         0000122222    3479999999999985443   22334444


Q ss_pred             HHcCC---------eEEEeeccCCCcHHHHHHHHHHHHHhc
Q 028300          148 KEHGS---------LFLECSAKTRENVEQCFEQLALKIMEV  179 (211)
Q Consensus       148 ~~~~~---------~~~~~Sa~~~~gv~~l~~~i~~~~~~~  179 (211)
                      ..++.         +++++||++| |+++++++|.+.+.+.
T Consensus       155 ~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~~  194 (201)
T PRK04213        155 ERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHEA  194 (201)
T ss_pred             HHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcCc
Confidence            44443         5899999999 9999999999876543

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=99.92  E-value=9.5e-24  Score=147.62  Aligned_cols=147  Identities=23%  Similarity=0.220  Sum_probs=106.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccc--------hhhhccCC
Q 028300           15 FKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTL--------TSSYYRGA   86 (211)
Q Consensus        15 ~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~--------~~~~~~~~   86 (211)
                      ++|+++|++|+|||||++++.+.......+..+++.......+......+.+||+||..++...        ....+.++
T Consensus         2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~   81 (157)
T cd04164           2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDEIEKIGIERAREAIEEA   81 (157)
T ss_pred             cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCcchHHHHHHHHHHHHHhhC
Confidence            5899999999999999999998775333333444333322222223467899999996554321        23467799


Q ss_pred             cEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHH
Q 028300           87 QGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVE  166 (211)
Q Consensus        87 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~  166 (211)
                      |++++|+|++++.+...... +..       ..+.|+++|+||+|+.+....       .......+++++||.++.|++
T Consensus        82 ~~~v~v~d~~~~~~~~~~~~-~~~-------~~~~~vi~v~nK~D~~~~~~~-------~~~~~~~~~~~~Sa~~~~~v~  146 (157)
T cd04164          82 DLVLFVIDASRGLDEEDLEI-LEL-------PADKPIIVVLNKSDLLPDSEL-------LSLLAGKPIIAISAKTGEGLD  146 (157)
T ss_pred             CEEEEEEECCCCCCHHHHHH-HHh-------hcCCCEEEEEEchhcCCcccc-------ccccCCCceEEEECCCCCCHH
Confidence            99999999998777666544 222       357999999999998654433       233446789999999999999


Q ss_pred             HHHHHHHHHH
Q 028300          167 QCFEQLALKI  176 (211)
Q Consensus       167 ~l~~~i~~~~  176 (211)
                      +++++|.+.+
T Consensus       147 ~l~~~l~~~~  156 (157)
T cd04164         147 ELKEALLELA  156 (157)
T ss_pred             HHHHHHHHhh
Confidence            9999987754

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=99.91  E-value=2.5e-23  Score=147.27  Aligned_cols=155  Identities=21%  Similarity=0.199  Sum_probs=104.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECC---EEEEEEEEeCCChhhhccchhhhccCCcEEEEE
Q 028300           16 KILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAG---KRLKLTIWDTAGQERFRTLTSSYYRGAQGIILV   92 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (211)
                      .|+++|.+|+|||||+++|....+... ...+.+.......+..   ....+.+|||||+..+..++...+..+|++++|
T Consensus         2 ~i~iiG~~~~GKtsli~~l~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v   80 (168)
T cd01887           2 VVTVMGHVDHGKTTLLDKIRKTNVAAG-EAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILV   80 (168)
T ss_pred             EEEEEecCCCCHHHHHHHHHhcccccc-cCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEE
Confidence            489999999999999999998877432 1112222222222222   367889999999998888888888999999999


Q ss_pred             EECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCH-HHHHHHHH----H--cCCeEEEeeccCCCcH
Q 028300           93 YDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSR-EEGIALAK----E--HGSLFLECSAKTRENV  165 (211)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~-~~~~~~~~----~--~~~~~~~~Sa~~~~gv  165 (211)
                      +|+++........  ....+.    ..++|+++|+||+|+........ .....+..    .  ...+++++|++++.|+
T Consensus        81 ~d~~~~~~~~~~~--~~~~~~----~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  154 (168)
T cd01887          81 VAADDGVMPQTIE--AIKLAK----AANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGI  154 (168)
T ss_pred             EECCCCccHHHHH--HHHHHH----HcCCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCcEEEeecccCCCH
Confidence            9999843222111  112222    24789999999999864321111 11111111    1  1357999999999999


Q ss_pred             HHHHHHHHHHHH
Q 028300          166 EQCFEQLALKIM  177 (211)
Q Consensus       166 ~~l~~~i~~~~~  177 (211)
                      ++++++|.+...
T Consensus       155 ~~l~~~l~~~~~  166 (168)
T cd01887         155 DDLLEAILLLAE  166 (168)
T ss_pred             HHHHHHHHHhhh
Confidence            999999987654

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=99.91  E-value=4e-23  Score=144.75  Aligned_cols=147  Identities=18%  Similarity=0.214  Sum_probs=105.2

Q ss_pred             EEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhcc------chhhhc--cCCcEE
Q 028300           19 LIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRT------LTSSYY--RGAQGI   89 (211)
Q Consensus        19 v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~------~~~~~~--~~~d~~   89 (211)
                      ++|.+|+|||||++++.+..+ ....+....+.....+.+++  ..+.+|||||+..+..      +...++  ..+|++
T Consensus         1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~v   78 (158)
T cd01879           1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLI   78 (158)
T ss_pred             CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC--eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEE
Confidence            589999999999999998764 33333333334334444443  5789999999876654      244555  489999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHH
Q 028300           90 ILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCF  169 (211)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~  169 (211)
                      ++|+|+++.+...   . +...+.    ..++|+++|+||+|+.+...+... ...+...++.+++++|+.++.|+++++
T Consensus        79 i~v~d~~~~~~~~---~-~~~~~~----~~~~~~iiv~NK~Dl~~~~~~~~~-~~~~~~~~~~~~~~iSa~~~~~~~~l~  149 (158)
T cd01879          79 VNVVDATNLERNL---Y-LTLQLL----ELGLPVVVALNMIDEAEKRGIKID-LDKLSELLGVPVVPTSARKGEGIDELK  149 (158)
T ss_pred             EEEeeCCcchhHH---H-HHHHHH----HcCCCEEEEEehhhhcccccchhh-HHHHHHhhCCCeEEEEccCCCCHHHHH
Confidence            9999999865432   2 332222    237899999999999665444333 345566678899999999999999999


Q ss_pred             HHHHHHH
Q 028300          170 EQLALKI  176 (211)
Q Consensus       170 ~~i~~~~  176 (211)
                      +++.+.+
T Consensus       150 ~~l~~~~  156 (158)
T cd01879         150 DAIAELA  156 (158)
T ss_pred             HHHHHHh
Confidence            9988763

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]

Probab=99.91  E-value=1.5e-24  Score=142.84  Aligned_cols=160  Identities=21%  Similarity=0.351  Sum_probs=130.6

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEE
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGII   90 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (211)
                      ..+..+.++|..+||||||++....+.+ ....|+.|....    .+....+.+.+||+||+..|+++|..+.+.+++++
T Consensus        18 k~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmr----k~tkgnvtiklwD~gGq~rfrsmWerycR~v~aiv   93 (186)
T KOG0075|consen   18 KEEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMR----KVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIV   93 (186)
T ss_pred             HheeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeE----EeccCceEEEEEecCCCccHHHHHHHHhhcCcEEE
Confidence            4567899999999999999999998877 777888887776    55567789999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHH-HH----HHHHcCCeEEEeeccCCCcH
Q 028300           91 LVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEG-IA----LAKEHGSLFLECSAKTRENV  165 (211)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~-~~----~~~~~~~~~~~~Sa~~~~gv  165 (211)
                      ||+|+.+++.++..+..+...+... ...++|+++++||.|+..+-  ..... ..    ......+-.|.+|+++..++
T Consensus        94 Y~VDaad~~k~~~sr~EL~~LL~k~-~l~gip~LVLGnK~d~~~AL--~~~~li~rmgL~sitdREvcC~siScke~~Ni  170 (186)
T KOG0075|consen   94 YVVDAADPDKLEASRSELHDLLDKP-SLTGIPLLVLGNKIDLPGAL--SKIALIERMGLSSITDREVCCFSISCKEKVNI  170 (186)
T ss_pred             EEeecCCcccchhhHHHHHHHhcch-hhcCCcEEEecccccCcccc--cHHHHHHHhCccccccceEEEEEEEEcCCccH
Confidence            9999999999888888777777644 56799999999999986542  22221 11    11223355899999999999


Q ss_pred             HHHHHHHHHHHHh
Q 028300          166 EQCFEQLALKIME  178 (211)
Q Consensus       166 ~~l~~~i~~~~~~  178 (211)
                      +.+.+||++....
T Consensus       171 d~~~~Wli~hsk~  183 (186)
T KOG0075|consen  171 DITLDWLIEHSKS  183 (186)
T ss_pred             HHHHHHHHHHhhh
Confidence            9999999886543

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.91  E-value=8.3e-24  Score=171.74  Aligned_cols=162  Identities=22%  Similarity=0.174  Sum_probs=112.5

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEE--EEEECCEEEEEEEEeCCCh----------hhhccch
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIK--LLTVAGKRLKLTIWDTAGQ----------ERFRTLT   79 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~D~~g~----------~~~~~~~   79 (211)
                      +..++|+++|.+|+|||||+++|++.......+..+++....  .+..++  ..+.||||||.          +.+..+.
T Consensus       209 ~~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~--~~~~l~DTaG~~~~~~~~~~~e~~~~~~  286 (472)
T PRK03003        209 GGPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGG--KTWRFVDTAGLRRRVKQASGHEYYASLR  286 (472)
T ss_pred             ccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECC--EEEEEEECCCccccccccchHHHHHHHH
Confidence            356999999999999999999999887644445555554433  334444  45689999994          2222222


Q ss_pred             -hhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccC--HHHHHH-HHHHcCCeEE
Q 028300           80 -SSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVS--REEGIA-LAKEHGSLFL  155 (211)
Q Consensus        80 -~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~--~~~~~~-~~~~~~~~~~  155 (211)
                       ...++.+|++++|+|+++..++.+..  +...+.    ..++|+++|+||+|+.+.....  ..+... +.....++++
T Consensus       287 ~~~~i~~ad~vilV~Da~~~~s~~~~~--~~~~~~----~~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~  360 (472)
T PRK03003        287 THAAIEAAEVAVVLIDASEPISEQDQR--VLSMVI----EAGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRV  360 (472)
T ss_pred             HHHHHhcCCEEEEEEeCCCCCCHHHHH--HHHHHH----HcCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEE
Confidence             23578999999999999987777664  333332    2478999999999996432111  111111 1112336899


Q ss_pred             EeeccCCCcHHHHHHHHHHHHHhccc
Q 028300          156 ECSAKTRENVEQCFEQLALKIMEVPS  181 (211)
Q Consensus       156 ~~Sa~~~~gv~~l~~~i~~~~~~~~~  181 (211)
                      ++||++|.|++++|+.+.+.+.....
T Consensus       361 ~~SAk~g~gv~~lf~~i~~~~~~~~~  386 (472)
T PRK03003        361 NISAKTGRAVDKLVPALETALESWDT  386 (472)
T ss_pred             EEECCCCCCHHHHHHHHHHHHHHhcc
Confidence            99999999999999999987765543

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=99.91  E-value=3.4e-23  Score=165.82  Aligned_cols=155  Identities=22%  Similarity=0.207  Sum_probs=113.7

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccc--------hhhh
Q 028300           11 YDLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTL--------TSSY   82 (211)
Q Consensus        11 ~~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~--------~~~~   82 (211)
                      ....++|+++|++|+|||||+|+|++.......+.++++.......+...+..+.+|||||..++...        ....
T Consensus       200 ~~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~~~ie~~gi~~~~~~  279 (442)
T TIGR00450       200 LDDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIREHADFVERLGIEKSFKA  279 (442)
T ss_pred             hhcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccchhHHHHHHHHHHHHH
Confidence            35668999999999999999999998765444455565555444333334466799999997544322        2357


Q ss_pred             ccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCC
Q 028300           83 YRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTR  162 (211)
Q Consensus        83 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~  162 (211)
                      ++.+|++++|||++++.+++..   |...+.    ..++|+++|+||+|+...   .   ...+...++.+++++|+++ 
T Consensus       280 ~~~aD~il~V~D~s~~~s~~~~---~l~~~~----~~~~piIlV~NK~Dl~~~---~---~~~~~~~~~~~~~~vSak~-  345 (442)
T TIGR00450       280 IKQADLVIYVLDASQPLTKDDF---LIIDLN----KSKKPFILVLNKIDLKIN---S---LEFFVSSKVLNSSNLSAKQ-  345 (442)
T ss_pred             HhhCCEEEEEEECCCCCChhHH---HHHHHh----hCCCCEEEEEECccCCCc---c---hhhhhhhcCCceEEEEEec-
Confidence            7899999999999998776654   443332    247899999999998543   1   1234456677899999998 


Q ss_pred             CcHHHHHHHHHHHHHhc
Q 028300          163 ENVEQCFEQLALKIMEV  179 (211)
Q Consensus       163 ~gv~~l~~~i~~~~~~~  179 (211)
                      .|++++|+.+.+.+.+.
T Consensus       346 ~gI~~~~~~L~~~i~~~  362 (442)
T TIGR00450       346 LKIKALVDLLTQKINAF  362 (442)
T ss_pred             CCHHHHHHHHHHHHHHH
Confidence            69999999988887654

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>cd01894 EngA1 EngA1 subfamily

Probab=99.91  E-value=1.3e-23  Score=146.92  Aligned_cols=147  Identities=21%  Similarity=0.104  Sum_probs=100.4

Q ss_pred             EEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhcc--------chhhhccCCcEE
Q 028300           18 LLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRT--------LTSSYYRGAQGI   89 (211)
Q Consensus        18 ~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~--------~~~~~~~~~d~~   89 (211)
                      +++|.+|+|||||+++|++..........+++..............+.+||+||+..+..        .+...++.+|++
T Consensus         1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~i   80 (157)
T cd01894           1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDEGISKEIREQAELAIEEADVI   80 (157)
T ss_pred             CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCEE
Confidence            479999999999999999875322222333333222222223346789999999876433        334567889999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCC-eEEEeeccCCCcHHHH
Q 028300           90 ILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGS-LFLECSAKTRENVEQC  168 (211)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~gv~~l  168 (211)
                      ++|+|..+..+.....  +...+..    .+.|+++|+||+|+.+....     .......+. +++++|++++.|++++
T Consensus        81 i~v~d~~~~~~~~~~~--~~~~~~~----~~~piiiv~nK~D~~~~~~~-----~~~~~~~~~~~~~~~Sa~~~~gv~~l  149 (157)
T cd01894          81 LFVVDGREGLTPADEE--IAKYLRK----SKKPVILVVNKVDNIKEEDE-----AAEFYSLGFGEPIPISAEHGRGIGDL  149 (157)
T ss_pred             EEEEeccccCCccHHH--HHHHHHh----cCCCEEEEEECcccCChHHH-----HHHHHhcCCCCeEEEecccCCCHHHH
Confidence            9999998754433321  2333332    36999999999998654332     222334455 7899999999999999


Q ss_pred             HHHHHHH
Q 028300          169 FEQLALK  175 (211)
Q Consensus       169 ~~~i~~~  175 (211)
                      |++|.+.
T Consensus       150 ~~~l~~~  156 (157)
T cd01894         150 LDAILEL  156 (157)
T ss_pred             HHHHHhh
Confidence            9999875

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>TIGR02729 Obg_CgtA Obg family GTPase CgtA

Probab=99.91  E-value=3.3e-23  Score=160.25  Aligned_cols=158  Identities=19%  Similarity=0.168  Sum_probs=109.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEE--EEEECCEEEEEEEEeCCChhhh----ccchhh---hccC
Q 028300           15 FKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIK--LLTVAGKRLKLTIWDTAGQERF----RTLTSS---YYRG   85 (211)
Q Consensus        15 ~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~D~~g~~~~----~~~~~~---~~~~   85 (211)
                      ..|+++|.|+||||||+++|...... ....+.++....  .+.+. ....+.+||+||..+.    ..+...   .+..
T Consensus       158 adV~lvG~pnaGKSTLl~~lt~~~~~-va~y~fTT~~p~ig~v~~~-~~~~~~i~D~PGli~~a~~~~gLg~~flrhier  235 (329)
T TIGR02729       158 ADVGLVGLPNAGKSTLISAVSAAKPK-IADYPFTTLVPNLGVVRVD-DGRSFVIADIPGLIEGASEGAGLGHRFLKHIER  235 (329)
T ss_pred             ccEEEEcCCCCCHHHHHHHHhcCCcc-ccCCCCCccCCEEEEEEeC-CceEEEEEeCCCcccCCcccccHHHHHHHHHHh
Confidence            47899999999999999999987541 111112222211  22222 2367899999996421    122333   3457


Q ss_pred             CcEEEEEEECCCh---hhHHHHHHHHHHHhhhhcc-CCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccC
Q 028300           86 AQGIILVYDVTRR---ETFTNLSDVWAKEVDLYST-NQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKT  161 (211)
Q Consensus        86 ~d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~-~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~  161 (211)
                      +|++++|+|+++.   ++++.+.. |..++..+.. ..++|++||+||+|+.+... ..+....+....+.+++++||++
T Consensus       236 ad~ll~VvD~s~~~~~~~~e~l~~-l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~-~~~~~~~l~~~~~~~vi~iSAkt  313 (329)
T TIGR02729       236 TRVLLHLIDISPLDGRDPIEDYEI-IRNELKKYSPELAEKPRIVVLNKIDLLDEEE-LAELLKELKKALGKPVFPISALT  313 (329)
T ss_pred             hCEEEEEEcCccccccCHHHHHHH-HHHHHHHhhhhhccCCEEEEEeCccCCChHH-HHHHHHHHHHHcCCcEEEEEccC
Confidence            9999999999986   56777766 7777665522 35789999999999965533 22333445555678899999999


Q ss_pred             CCcHHHHHHHHHHHH
Q 028300          162 RENVEQCFEQLALKI  176 (211)
Q Consensus       162 ~~gv~~l~~~i~~~~  176 (211)
                      +.|+++++++|.+.+
T Consensus       314 g~GI~eL~~~I~~~l  328 (329)
T TIGR02729       314 GEGLDELLYALAELL  328 (329)
T ss_pred             CcCHHHHHHHHHHHh
Confidence            999999999998754

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=99.91  E-value=2.5e-23  Score=150.73  Aligned_cols=148  Identities=21%  Similarity=0.193  Sum_probs=104.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhh--CCCCCC-------------CCccceeeEEEEEEECCEEEEEEEEeCCChhhhccch
Q 028300           15 FKILLIGDSGVGKSSLLVSFIS--SSVDDL-------------SPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLT   79 (211)
Q Consensus        15 ~~I~v~G~~~~GKssli~~l~~--~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~   79 (211)
                      -+|+++|.+++|||||+++|++  +.+...             ..+.+.+.......+......+.+||+||+.+|...+
T Consensus         3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~   82 (194)
T cd01891           3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV   82 (194)
T ss_pred             cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence            4899999999999999999997  444222             1234555555555555667889999999999998889


Q ss_pred             hhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCccc-CHHHHHHHHH-------HcC
Q 028300           80 SSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVV-SREEGIALAK-------EHG  151 (211)
Q Consensus        80 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v-~~~~~~~~~~-------~~~  151 (211)
                      ..+++++|++++|||+++.. ...... +...+.    ..++|+++|+||+|+...... ...+...+..       ..+
T Consensus        83 ~~~~~~~d~~ilV~d~~~~~-~~~~~~-~~~~~~----~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (194)
T cd01891          83 ERVLSMVDGVLLLVDASEGP-MPQTRF-VLKKAL----ELGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLD  156 (194)
T ss_pred             HHHHHhcCEEEEEEECCCCc-cHHHHH-HHHHHH----HcCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCc
Confidence            99999999999999998742 222222 333222    247899999999998643321 1233333332       236


Q ss_pred             CeEEEeeccCCCcHHHH
Q 028300          152 SLFLECSAKTRENVEQC  168 (211)
Q Consensus       152 ~~~~~~Sa~~~~gv~~l  168 (211)
                      ++++++||++|.|+.++
T Consensus       157 ~~iv~~Sa~~g~~~~~~  173 (194)
T cd01891         157 FPVLYASAKNGWASLNL  173 (194)
T ss_pred             cCEEEeehhcccccccc
Confidence            78999999999887544

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=99.91  E-value=5.1e-23  Score=137.64  Aligned_cols=114  Identities=34%  Similarity=0.619  Sum_probs=90.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCCCC---CCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEEE
Q 028300           16 KILLIGDSGVGKSSLLVSFISSSVD---DLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILV   92 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (211)
                      ||+|+|++|||||||+++|++..+.   ...+..+.+..............+.+||++|.+.+...+...+..+|++++|
T Consensus         1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv   80 (119)
T PF08477_consen    1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV   80 (119)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred             CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence            7999999999999999999998875   3445556666666667777777799999999998888777789999999999


Q ss_pred             EECCChhhHHHHHHH--HHHHhhhhccCCCccEEEEeecCC
Q 028300           93 YDVTRRETFTNLSDV--WAKEVDLYSTNQDCVKMLVGNKVD  131 (211)
Q Consensus        93 ~d~~~~~s~~~~~~~--~~~~~~~~~~~~~~p~viv~nK~D  131 (211)
                      ||++++.+++.+...  |+..+...  ..++|+++|+||.|
T Consensus        81 ~D~s~~~s~~~~~~~~~~l~~~~~~--~~~~piilv~nK~D  119 (119)
T PF08477_consen   81 YDLSDPESLEYLSQLLKWLKNIRKR--DKNIPIILVGNKSD  119 (119)
T ss_dssp             EECCGHHHHHHHHHHHHHHHHHHHH--SSCSEEEEEEE-TC
T ss_pred             EcCCChHHHHHHHHHHHHHHHHHcc--CCCCCEEEEEeccC
Confidence            999999999998663  44444433  45699999999998

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=99.90  E-value=2.8e-23  Score=167.19  Aligned_cols=151  Identities=23%  Similarity=0.228  Sum_probs=110.7

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccc--------hhhhc
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTL--------TSSYY   83 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~--------~~~~~   83 (211)
                      ...++|+++|.+|+|||||+|+|++.......+.++++.......+...+..+.+|||||..++...        ....+
T Consensus       213 ~~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~  292 (449)
T PRK05291        213 REGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETDDEVEKIGIERSREAI  292 (449)
T ss_pred             hcCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCeEEEEEeCCCCCCCccHHHHHHHHHHHHHH
Confidence            3458999999999999999999998775444444555444333333223457899999997654322        23367


Q ss_pred             cCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCC
Q 028300           84 RGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRE  163 (211)
Q Consensus        84 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  163 (211)
                      ..+|++++|+|++++.++++... |..       ..+.|+++|+||+|+.+.....        ...+.+++++||+++.
T Consensus       293 ~~aD~il~VvD~s~~~s~~~~~~-l~~-------~~~~piiiV~NK~DL~~~~~~~--------~~~~~~~i~iSAktg~  356 (449)
T PRK05291        293 EEADLVLLVLDASEPLTEEDDEI-LEE-------LKDKPVIVVLNKADLTGEIDLE--------EENGKPVIRISAKTGE  356 (449)
T ss_pred             HhCCEEEEEecCCCCCChhHHHH-HHh-------cCCCCcEEEEEhhhccccchhh--------hccCCceEEEEeeCCC
Confidence            89999999999999877765433 432       3478999999999996543221        2345679999999999


Q ss_pred             cHHHHHHHHHHHHHh
Q 028300          164 NVEQCFEQLALKIME  178 (211)
Q Consensus       164 gv~~l~~~i~~~~~~  178 (211)
                      |+++++++|.+.+..
T Consensus       357 GI~~L~~~L~~~l~~  371 (449)
T PRK05291        357 GIDELREAIKELAFG  371 (449)
T ss_pred             CHHHHHHHHHHHHhh
Confidence            999999999998764

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.90  E-value=4.1e-23  Score=167.72  Aligned_cols=155  Identities=20%  Similarity=0.180  Sum_probs=111.6

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhh--------hccchhhhcc
Q 028300           13 LSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER--------FRTLTSSYYR   84 (211)
Q Consensus        13 ~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~--------~~~~~~~~~~   84 (211)
                      ...+|+|+|.+|||||||+|+|++.......++++++...........+..+.+|||||...        +...+..+++
T Consensus        37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~  116 (472)
T PRK03003         37 PLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDAKGLQASVAEQAEVAMR  116 (472)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcchhHHHHHHHHHHHHHH
Confidence            34789999999999999999999887655566667665554444433445689999999652        3334556788


Q ss_pred             CCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCC-eEEEeeccCCC
Q 028300           85 GAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGS-LFLECSAKTRE  163 (211)
Q Consensus        85 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~  163 (211)
                      .+|++|+|+|+++..+.... . +...+.    ..++|+++|+||+|+....   .+....+  ..+. .++++||++|.
T Consensus       117 ~aD~il~VvD~~~~~s~~~~-~-i~~~l~----~~~~piilV~NK~Dl~~~~---~~~~~~~--~~g~~~~~~iSA~~g~  185 (472)
T PRK03003        117 TADAVLFVVDATVGATATDE-A-VARVLR----RSGKPVILAANKVDDERGE---ADAAALW--SLGLGEPHPVSALHGR  185 (472)
T ss_pred             hCCEEEEEEECCCCCCHHHH-H-HHHHHH----HcCCCEEEEEECccCCccc---hhhHHHH--hcCCCCeEEEEcCCCC
Confidence            99999999999987554332 2 444444    2479999999999985422   1111122  2333 35799999999


Q ss_pred             cHHHHHHHHHHHHHh
Q 028300          164 NVEQCFEQLALKIME  178 (211)
Q Consensus       164 gv~~l~~~i~~~~~~  178 (211)
                      |++++|++|.+.+.+
T Consensus       186 gi~eL~~~i~~~l~~  200 (472)
T PRK03003        186 GVGDLLDAVLAALPE  200 (472)
T ss_pred             CcHHHHHHHHhhccc
Confidence            999999999998865

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=99.90  E-value=2.1e-23  Score=148.72  Aligned_cols=155  Identities=24%  Similarity=0.240  Sum_probs=103.3

Q ss_pred             EEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCE-EEEEEEEeCCChhh----hccc---hhhhccCCcEEE
Q 028300           19 LIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGK-RLKLTIWDTAGQER----FRTL---TSSYYRGAQGII   90 (211)
Q Consensus        19 v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~D~~g~~~----~~~~---~~~~~~~~d~~i   90 (211)
                      ++|++|||||||+++|.+... ......+++........... ...+.+||+||..+    .+.+   ....+..+|+++
T Consensus         1 iiG~~~~GKStll~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii   79 (176)
T cd01881           1 LVGLPNVGKSTLLNALTNAKP-KVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAIL   79 (176)
T ss_pred             CCCCCCCcHHHHHHHHhcCCc-cccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEE
Confidence            589999999999999998864 11111222221111112223 56789999999632    1222   233567899999


Q ss_pred             EEEECCCh------hhHHHHHHHHHHHhhhhcc------CCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEee
Q 028300           91 LVYDVTRR------ETFTNLSDVWAKEVDLYST------NQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECS  158 (211)
Q Consensus        91 ~v~d~~~~------~s~~~~~~~~~~~~~~~~~------~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~S  158 (211)
                      +|+|+++.      .++.+... |...+.....      ..+.|+++|+||+|+..................+.+++++|
T Consensus        80 ~v~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S  158 (176)
T cd01881          80 HVVDASEDDDIGGVDPLEDYEI-LNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRELALEEGAEVVPIS  158 (176)
T ss_pred             EEEeccCCccccccCHHHHHHH-HHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHHHhcCCCCCEEEEe
Confidence            99999987      46766665 5555543322      14799999999999965544333222233334566799999


Q ss_pred             ccCCCcHHHHHHHHHHH
Q 028300          159 AKTRENVEQCFEQLALK  175 (211)
Q Consensus       159 a~~~~gv~~l~~~i~~~  175 (211)
                      ++++.|++++++++...
T Consensus       159 a~~~~gl~~l~~~l~~~  175 (176)
T cd01881         159 AKTEEGLDELIRAIYEL  175 (176)
T ss_pred             hhhhcCHHHHHHHHHhh
Confidence            99999999999998764

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=99.90  E-value=7.9e-23  Score=159.44  Aligned_cols=153  Identities=23%  Similarity=0.210  Sum_probs=106.4

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChh---------hhccchhhh
Q 028300           13 LSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQE---------RFRTLTSSY   82 (211)
Q Consensus        13 ~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~---------~~~~~~~~~   82 (211)
                      ..++|+++|.+|+|||||+|+|.+..+ ....+....+.....+.+.+ ...+.||||+|..         .|... ...
T Consensus       188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~-~~~i~l~DT~G~~~~l~~~lie~f~~t-le~  265 (351)
T TIGR03156       188 DVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPD-GGEVLLTDTVGFIRDLPHELVAAFRAT-LEE  265 (351)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCC-CceEEEEecCcccccCCHHHHHHHHHH-HHH
Confidence            448999999999999999999998764 11112122223334444432 3478999999962         22222 234


Q ss_pred             ccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCC
Q 028300           83 YRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTR  162 (211)
Q Consensus        83 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~  162 (211)
                      +.++|++++|+|++++.+.+.... |...+... ...++|+++|+||+|+.+...+     ... .....+++++||+++
T Consensus       266 ~~~ADlil~VvD~s~~~~~~~~~~-~~~~L~~l-~~~~~piIlV~NK~Dl~~~~~v-----~~~-~~~~~~~i~iSAktg  337 (351)
T TIGR03156       266 VREADLLLHVVDASDPDREEQIEA-VEKVLEEL-GAEDIPQLLVYNKIDLLDEPRI-----ERL-EEGYPEAVFVSAKTG  337 (351)
T ss_pred             HHhCCEEEEEEECCCCchHHHHHH-HHHHHHHh-ccCCCCEEEEEEeecCCChHhH-----HHH-HhCCCCEEEEEccCC
Confidence            789999999999999888777655 55555544 3357899999999998643221     111 112246899999999


Q ss_pred             CcHHHHHHHHHHH
Q 028300          163 ENVEQCFEQLALK  175 (211)
Q Consensus       163 ~gv~~l~~~i~~~  175 (211)
                      .|+++++++|.+.
T Consensus       338 ~GI~eL~~~I~~~  350 (351)
T TIGR03156       338 EGLDLLLEAIAER  350 (351)
T ss_pred             CCHHHHHHHHHhh
Confidence            9999999998764

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>PRK00089 era GTPase Era; Reviewed

Probab=99.90  E-value=1.5e-22  Score=155.47  Aligned_cols=168  Identities=18%  Similarity=0.177  Sum_probs=116.0

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhc--------cchhhhcc
Q 028300           13 LSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFR--------TLTSSYYR   84 (211)
Q Consensus        13 ~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~--------~~~~~~~~   84 (211)
                      +.-.|+++|.+|||||||+|+|++.......+.+.++.............++.+|||||.....        ......+.
T Consensus         4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~   83 (292)
T PRK00089          4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLK   83 (292)
T ss_pred             eeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCCceEEEEECCCCCCchhHHHHHHHHHHHHHHh
Confidence            4567999999999999999999988775555555554444333333344789999999954321        22344678


Q ss_pred             CCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcC-CeEEEeeccCCC
Q 028300           85 GAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHG-SLFLECSAKTRE  163 (211)
Q Consensus        85 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~  163 (211)
                      .+|++++|+|+++...  .....+...+.    ..+.|+++|+||+|+.............+....+ .+++++||+++.
T Consensus        84 ~~D~il~vvd~~~~~~--~~~~~i~~~l~----~~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA~~~~  157 (292)
T PRK00089         84 DVDLVLFVVDADEKIG--PGDEFILEKLK----KVKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPISALKGD  157 (292)
T ss_pred             cCCEEEEEEeCCCCCC--hhHHHHHHHHh----hcCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEecCCCCC
Confidence            8999999999998322  12221333333    2478999999999996332222233334433333 579999999999


Q ss_pred             cHHHHHHHHHHHHHhccchhccc
Q 028300          164 NVEQCFEQLALKIMEVPSLLEEG  186 (211)
Q Consensus       164 gv~~l~~~i~~~~~~~~~~~~~~  186 (211)
                      |+++++++|.+.+.+....++..
T Consensus       158 gv~~L~~~L~~~l~~~~~~y~~~  180 (292)
T PRK00089        158 NVDELLDVIAKYLPEGPPYYPED  180 (292)
T ss_pred             CHHHHHHHHHHhCCCCCCCCCCC
Confidence            99999999999988777666654

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.90  E-value=2.2e-22  Score=162.46  Aligned_cols=162  Identities=23%  Similarity=0.178  Sum_probs=113.3

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccc-----------hh
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTL-----------TS   80 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~-----------~~   80 (211)
                      ...++|+++|.+|+|||||+++|++.+.....+..+++.......+...+..+.+|||||..+....           ..
T Consensus       170 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~  249 (429)
T TIGR03594       170 DGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTL  249 (429)
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCcEEEEEECCCccccccchhhHHHHHHHHHH
Confidence            4568999999999999999999998876444555566555444443333457899999996443221           12


Q ss_pred             hhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHH-HH----cCCeEE
Q 028300           81 SYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALA-KE----HGSLFL  155 (211)
Q Consensus        81 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~-~~----~~~~~~  155 (211)
                      ..++.+|++++|+|+++..+..+..  +...+.    ..++|+++|+||+|+.+. ....++..... ..    ..++++
T Consensus       250 ~~~~~ad~~ilV~D~~~~~~~~~~~--~~~~~~----~~~~~iiiv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~vi  322 (429)
T TIGR03594       250 KAIERADVVLLVLDATEGITEQDLR--IAGLIL----EAGKALVIVVNKWDLVKD-EKTREEFKKELRRKLPFLDFAPIV  322 (429)
T ss_pred             HHHHhCCEEEEEEECCCCccHHHHH--HHHHHH----HcCCcEEEEEECcccCCC-HHHHHHHHHHHHHhcccCCCCceE
Confidence            3678999999999999876665543  333332    247899999999998621 11112222111 12    247899


Q ss_pred             EeeccCCCcHHHHHHHHHHHHHhcc
Q 028300          156 ECSAKTRENVEQCFEQLALKIMEVP  180 (211)
Q Consensus       156 ~~Sa~~~~gv~~l~~~i~~~~~~~~  180 (211)
                      ++||++|.|++++|+++.+.+....
T Consensus       323 ~~SA~~g~~v~~l~~~i~~~~~~~~  347 (429)
T TIGR03594       323 FISALTGQGVDKLLDAIDEVYENAN  347 (429)
T ss_pred             EEeCCCCCCHHHHHHHHHHHHHHhc
Confidence            9999999999999999998776554

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>PRK12297 obgE GTPase CgtA; Reviewed

Probab=99.90  E-value=3.5e-22  Score=158.33  Aligned_cols=161  Identities=20%  Similarity=0.233  Sum_probs=113.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCE-EEEEEEEeCCChhh----hccchhhh---ccCCc
Q 028300           16 KILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGK-RLKLTIWDTAGQER----FRTLTSSY---YRGAQ   87 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~D~~g~~~----~~~~~~~~---~~~~d   87 (211)
                      .|+++|.|+||||||+++|++.... ....++++.......+... ...+.+||+||..+    ...+...+   +..++
T Consensus       160 dVglVG~pNaGKSTLLn~Lt~ak~k-Ia~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrhier~~  238 (424)
T PRK12297        160 DVGLVGFPNVGKSTLLSVVSNAKPK-IANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRHIERTR  238 (424)
T ss_pred             cEEEEcCCCCCHHHHHHHHHcCCCc-cccCCcceeceEEEEEEEeCCceEEEEECCCCcccccccchHHHHHHHHHhhCC
Confidence            8999999999999999999987642 1223333433333322222 46799999999632    22233333   45689


Q ss_pred             EEEEEEECCCh---hhHHHHHHHHHHHhhhhcc-CCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCC
Q 028300           88 GIILVYDVTRR---ETFTNLSDVWAKEVDLYST-NQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRE  163 (211)
Q Consensus        88 ~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~-~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  163 (211)
                      ++++|+|+++.   +.+++... |...+..+.. ..++|++||+||+|+...    .+....+...++.+++++||+++.
T Consensus       239 llI~VID~s~~~~~dp~e~~~~-i~~EL~~y~~~L~~kP~IVV~NK~DL~~~----~e~l~~l~~~l~~~i~~iSA~tge  313 (424)
T PRK12297        239 VIVHVIDMSGSEGRDPIEDYEK-INKELKLYNPRLLERPQIVVANKMDLPEA----EENLEEFKEKLGPKVFPISALTGQ  313 (424)
T ss_pred             EEEEEEeCCccccCChHHHHHH-HHHHHhhhchhccCCcEEEEEeCCCCcCC----HHHHHHHHHHhCCcEEEEeCCCCC
Confidence            99999999864   56666665 7777766532 257899999999998432    233444555556789999999999


Q ss_pred             cHHHHHHHHHHHHHhccch
Q 028300          164 NVEQCFEQLALKIMEVPSL  182 (211)
Q Consensus       164 gv~~l~~~i~~~~~~~~~~  182 (211)
                      |+++++++|.+.+.+.+..
T Consensus       314 GI~eL~~~L~~~l~~~~~~  332 (424)
T PRK12297        314 GLDELLYAVAELLEETPEF  332 (424)
T ss_pred             CHHHHHHHHHHHHHhCccc
Confidence            9999999999988776543

>cd04163 Era Era subfamily

Probab=99.90  E-value=2.3e-22  Score=141.80  Aligned_cols=156  Identities=18%  Similarity=0.139  Sum_probs=104.8

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhc--------cchhhhccC
Q 028300           14 SFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFR--------TLTSSYYRG   85 (211)
Q Consensus        14 ~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~--------~~~~~~~~~   85 (211)
                      ..+|+++|++|+|||||++++.+.......+...+...............+.+||+||.....        ......+..
T Consensus         3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~   82 (168)
T cd04163           3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALKD   82 (168)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHHh
Confidence            678999999999999999999987653333333333332233333345678999999964322        123445788


Q ss_pred             CcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHc-CCeEEEeeccCCCc
Q 028300           86 AQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEH-GSLFLECSAKTREN  164 (211)
Q Consensus        86 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~-~~~~~~~Sa~~~~g  164 (211)
                      +|++++|+|++++..  .....+...+..    .+.|+++|+||+|+........+....+.... ..+++++|++++.|
T Consensus        83 ~d~i~~v~d~~~~~~--~~~~~~~~~~~~----~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  156 (168)
T cd04163          83 VDLVLFVVDASEPIG--EGDEFILELLKK----SKTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPISALKGEN  156 (168)
T ss_pred             CCEEEEEEECCCccC--chHHHHHHHHHH----hCCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEEEeccCCC
Confidence            999999999998721  222213333332    26899999999998643322223333333334 25799999999999


Q ss_pred             HHHHHHHHHHH
Q 028300          165 VEQCFEQLALK  175 (211)
Q Consensus       165 v~~l~~~i~~~  175 (211)
                      +++++++|.+.
T Consensus       157 ~~~l~~~l~~~  167 (168)
T cd04163         157 VDELLEEIVKY  167 (168)
T ss_pred             hHHHHHHHHhh
Confidence            99999998764

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>cd01895 EngA2 EngA2 subfamily

Probab=99.90  E-value=2.7e-22  Score=142.43  Aligned_cols=156  Identities=24%  Similarity=0.172  Sum_probs=102.5

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhcc-----------chhhh
Q 028300           14 SFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRT-----------LTSSY   82 (211)
Q Consensus        14 ~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~-----------~~~~~   82 (211)
                      +++|+++|.+|+|||||++++.+..........+++.......+...+..+.+||+||......           .....
T Consensus         2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~   81 (174)
T cd01895           2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKA   81 (174)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCeeEEEEECCCCccccchhccHHHHHHHHHHHH
Confidence            5799999999999999999999876432222333333222222222334578999999643210           01234


Q ss_pred             ccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHH-HHc----CCeEEEe
Q 028300           83 YRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALA-KEH----GSLFLEC  157 (211)
Q Consensus        83 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~-~~~----~~~~~~~  157 (211)
                      +..+|++++|+|++++.+.....  +.....    ..+.|+++++||+|+.+............. ..+    ..+++++
T Consensus        82 ~~~~d~vi~v~d~~~~~~~~~~~--~~~~~~----~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (174)
T cd01895          82 IERADVVLLVIDATEGITEQDLR--IAGLIL----EEGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFI  155 (174)
T ss_pred             HhhcCeEEEEEeCCCCcchhHHH--HHHHHH----hcCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEE
Confidence            67899999999999886654432  222222    246899999999998665322222222222 222    3679999


Q ss_pred             eccCCCcHHHHHHHHHHH
Q 028300          158 SAKTRENVEQCFEQLALK  175 (211)
Q Consensus       158 Sa~~~~gv~~l~~~i~~~  175 (211)
                      ||+++.|++++++++.+.
T Consensus       156 Sa~~~~~i~~~~~~l~~~  173 (174)
T cd01895         156 SALTGQGVDKLFDAIDEV  173 (174)
T ss_pred             eccCCCCHHHHHHHHHHh
Confidence            999999999999998764

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>cd00881 GTP_translation_factor GTP translation factor family

Probab=99.89  E-value=2.8e-22  Score=144.49  Aligned_cols=155  Identities=20%  Similarity=0.151  Sum_probs=108.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCCCCCCCCc---------------cceeeEEEEEEECCEEEEEEEEeCCChhhhccchh
Q 028300           16 KILLIGDSGVGKSSLLVSFISSSVDDLSPT---------------IGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTS   80 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~   80 (211)
                      +|+++|.+|+|||||+++|.+.........               .+.+..............+.|||+||...+...+.
T Consensus         1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~   80 (189)
T cd00881           1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVI   80 (189)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHH
Confidence            589999999999999999998876332211               12222222223333457899999999988888888


Q ss_pred             hhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccC--HHHHHHHHHH---------
Q 028300           81 SYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVS--REEGIALAKE---------  149 (211)
Q Consensus        81 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~--~~~~~~~~~~---------  149 (211)
                      ..++.+|++++|+|+++..+.....  +...+.    ..+.|+++++||+|+..+....  ..........         
T Consensus        81 ~~~~~~d~~i~v~d~~~~~~~~~~~--~~~~~~----~~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (189)
T cd00881          81 RGLSVSDGAILVVDANEGVQPQTRE--HLRIAR----EGGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEE  154 (189)
T ss_pred             HHHHhcCEEEEEEECCCCCcHHHHH--HHHHHH----HCCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhh
Confidence            8899999999999998765433222  222222    2589999999999986532221  2222333322         


Q ss_pred             -----cCCeEEEeeccCCCcHHHHHHHHHHHH
Q 028300          150 -----HGSLFLECSAKTRENVEQCFEQLALKI  176 (211)
Q Consensus       150 -----~~~~~~~~Sa~~~~gv~~l~~~i~~~~  176 (211)
                           ...+++++||+++.|+++++.++.+.+
T Consensus       155 ~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l  186 (189)
T cd00881         155 GTRNGLLVPIVPGSALTGIGVEELLEAIVEHL  186 (189)
T ss_pred             hcccCCcceEEEEecccCcCHHHHHHHHHhhC
Confidence                 246799999999999999999998875

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>KOG1673 consensus Ras GTPases [General function prediction only]

Probab=99.89  E-value=1.9e-22  Score=134.20  Aligned_cols=178  Identities=25%  Similarity=0.477  Sum_probs=149.7

Q ss_pred             CCCCCceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccC
Q 028300            7 QSNSYDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRG   85 (211)
Q Consensus         7 ~~~~~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~   85 (211)
                      ++.+.--+++|.++|++..|||||+-.+.++++ ..+..+.|..+..+.+.+.+.++.+.+||++|+.++..+.+.....
T Consensus        13 ~a~~n~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~d   92 (205)
T KOG1673|consen   13 PAVSNLVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKD   92 (205)
T ss_pred             cccccceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecC
Confidence            445666789999999999999999999999998 7788899999999999999999999999999999999999999999


Q ss_pred             CcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCC--cccC---HHHHHHHHHHcCCeEEEeecc
Q 028300           86 AQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSE--RVVS---REEGIALAKEHGSLFLECSAK  160 (211)
Q Consensus        86 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~--~~v~---~~~~~~~~~~~~~~~~~~Sa~  160 (211)
                      +-++++.||++.+..+..+.. |.+..+.. -..-+| ++|+||.|+--.  .+..   ...++.+++..+++.+.+|+.
T Consensus        93 svaIlFmFDLt~r~TLnSi~~-WY~QAr~~-NktAiP-ilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts  169 (205)
T KOG1673|consen   93 SVAILFMFDLTRRSTLNSIKE-WYRQARGL-NKTAIP-ILVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCSTS  169 (205)
T ss_pred             cEEEEEEEecCchHHHHHHHH-HHHHHhcc-CCccce-EEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeecc
Confidence            999999999999999999999 77766544 233456 678999996211  1111   233567777889999999999


Q ss_pred             CCCcHHHHHHHHHHHHHhccchhcccc
Q 028300          161 TRENVEQCFEQLALKIMEVPSLLEEGS  187 (211)
Q Consensus       161 ~~~gv~~l~~~i~~~~~~~~~~~~~~~  187 (211)
                      .+.+++.+|.-++.++.+.....++..
T Consensus       170 ~sINv~KIFK~vlAklFnL~~ti~~~~  196 (205)
T KOG1673|consen  170 HSINVQKIFKIVLAKLFNLPWTIPEIL  196 (205)
T ss_pred             ccccHHHHHHHHHHHHhCCceeccccc
Confidence            999999999999999999887766554

>PRK12296 obgE GTPase CgtA; Reviewed

Probab=99.89  E-value=2.8e-22  Score=160.82  Aligned_cols=164  Identities=20%  Similarity=0.189  Sum_probs=112.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhh----ccc---hhhhccCCc
Q 028300           15 FKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERF----RTL---TSSYYRGAQ   87 (211)
Q Consensus        15 ~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~----~~~---~~~~~~~~d   87 (211)
                      ..|+|+|.||||||||+++|.+.... ....++++.......+......+.|||+||..+.    ..+   ....+..+|
T Consensus       160 adV~LVG~PNAGKSTLln~Ls~akpk-IadypfTTl~P~lGvv~~~~~~f~laDtPGliegas~g~gLg~~fLrhierad  238 (500)
T PRK12296        160 ADVGLVGFPSAGKSSLISALSAAKPK-IADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGASEGKGLGLDFLRHIERCA  238 (500)
T ss_pred             ceEEEEEcCCCCHHHHHHHHhcCCcc-ccccCcccccceEEEEEECCeEEEEEECCCCccccchhhHHHHHHHHHHHhcC
Confidence            47999999999999999999987542 1233444444433334334468999999995321    111   222457789


Q ss_pred             EEEEEEECCCh----hhHHHHHHHHHHHhhhhc----------cCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCe
Q 028300           88 GIILVYDVTRR----ETFTNLSDVWAKEVDLYS----------TNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSL  153 (211)
Q Consensus        88 ~~i~v~d~~~~----~s~~~~~~~~~~~~~~~~----------~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~  153 (211)
                      ++|+|+|+++.    +.+.++.. +..++..+.          .....|++||+||+|+.+..... +.........+++
T Consensus       239 vLv~VVD~s~~e~~rdp~~d~~~-i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~-e~l~~~l~~~g~~  316 (500)
T PRK12296        239 VLVHVVDCATLEPGRDPLSDIDA-LEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELA-EFVRPELEARGWP  316 (500)
T ss_pred             EEEEEECCcccccccCchhhHHH-HHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHHH-HHHHHHHHHcCCe
Confidence            99999999853    34445444 555554442          23478999999999986543321 2223333455789


Q ss_pred             EEEeeccCCCcHHHHHHHHHHHHHhccc
Q 028300          154 FLECSAKTRENVEQCFEQLALKIMEVPS  181 (211)
Q Consensus       154 ~~~~Sa~~~~gv~~l~~~i~~~~~~~~~  181 (211)
                      ++++||+++.|+++++.+|.+.+...+.
T Consensus       317 Vf~ISA~tgeGLdEL~~~L~ell~~~r~  344 (500)
T PRK12296        317 VFEVSAASREGLRELSFALAELVEEARA  344 (500)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHhhhc
Confidence            9999999999999999999998877654

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=99.89  E-value=1.1e-21  Score=142.41  Aligned_cols=161  Identities=21%  Similarity=0.220  Sum_probs=109.8

Q ss_pred             CCCceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCCh----------hhhcc
Q 028300            9 NSYDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQ----------ERFRT   77 (211)
Q Consensus         9 ~~~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~----------~~~~~   77 (211)
                      ...+..++|+++|.+|+|||||++++++..+ ..+.++.+.+.....+..   +..+.|||+||.          ..+..
T Consensus        19 ~~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~l~l~DtpG~~~~~~~~~~~~~~~~   95 (196)
T PRK00454         19 LPPDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV---NDKLRLVDLPGYGYAKVSKEEKEKWQK   95 (196)
T ss_pred             CCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec---CCeEEEeCCCCCCCcCCCchHHHHHHH
Confidence            3445778999999999999999999998864 566666666555443332   367999999994          23333


Q ss_pred             chhhhccC---CcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCH--HHHHHHHHHcCC
Q 028300           78 LTSSYYRG---AQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSR--EEGIALAKEHGS  152 (211)
Q Consensus        78 ~~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~--~~~~~~~~~~~~  152 (211)
                      +...+++.   .+++++++|.+++.......  +...+.    ..++|+++++||+|+........  ............
T Consensus        96 ~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~--i~~~l~----~~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~  169 (196)
T PRK00454         96 LIEEYLRTRENLKGVVLLIDSRHPLKELDLQ--MIEWLK----EYGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDD  169 (196)
T ss_pred             HHHHHHHhCccceEEEEEEecCCCCCHHHHH--HHHHHH----HcCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCC
Confidence            34444443   46788899988754433221  222222    24789999999999865433221  223333333357


Q ss_pred             eEEEeeccCCCcHHHHHHHHHHHHHh
Q 028300          153 LFLECSAKTRENVEQCFEQLALKIME  178 (211)
Q Consensus       153 ~~~~~Sa~~~~gv~~l~~~i~~~~~~  178 (211)
                      +++++|++++.|++++++.|.+.+.+
T Consensus       170 ~~~~~Sa~~~~gi~~l~~~i~~~~~~  195 (196)
T PRK00454        170 EVILFSSLKKQGIDELRAAIAKWLAE  195 (196)
T ss_pred             ceEEEEcCCCCCHHHHHHHHHHHhcC
Confidence            89999999999999999999877654

>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]

Probab=99.89  E-value=1.7e-21  Score=129.35  Aligned_cols=170  Identities=26%  Similarity=0.358  Sum_probs=140.7

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHhhCCC---CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhh-ccchhhhccCC
Q 028300           11 YDLSFKILLIGDSGVGKSSLLVSFISSSV---DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERF-RTLTSSYYRGA   86 (211)
Q Consensus        11 ~~~~~~I~v~G~~~~GKssli~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~-~~~~~~~~~~~   86 (211)
                      -.+.-||+++|..++|||+++.+++.+..   .+..+|....+....-+-.+..-.+.|+||.|...+ ..+-++++.-+
T Consensus         6 mGk~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~a   85 (198)
T KOG3883|consen    6 MGKVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFA   85 (198)
T ss_pred             hCcceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhccC
Confidence            34567999999999999999999998776   445555555444333333444567899999997766 56678899999


Q ss_pred             cEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHH
Q 028300           87 QGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVE  166 (211)
Q Consensus        87 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~  166 (211)
                      |++++|||..+++||..+.. +...+..+.....+|+++++||.|+.++.++..+.+..++....+..+++++.+...+-
T Consensus        86 DafVLVYs~~d~eSf~rv~l-lKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~rEkvkl~eVta~dR~sL~  164 (198)
T KOG3883|consen   86 DAFVLVYSPMDPESFQRVEL-LKKEIDKHKDKKEVPIVVLANKRDRAEPREVDMDVAQIWAKREKVKLWEVTAMDRPSLY  164 (198)
T ss_pred             ceEEEEecCCCHHHHHHHHH-HHHHHhhccccccccEEEEechhhcccchhcCHHHHHHHHhhhheeEEEEEeccchhhh
Confidence            99999999999999999877 77777776667789999999999999999999999999999889999999999999999


Q ss_pred             HHHHHHHHHHHhccc
Q 028300          167 QCFEQLALKIMEVPS  181 (211)
Q Consensus       167 ~l~~~i~~~~~~~~~  181 (211)
                      +-|..+..++...+.
T Consensus       165 epf~~l~~rl~~pqs  179 (198)
T KOG3883|consen  165 EPFTYLASRLHQPQS  179 (198)
T ss_pred             hHHHHHHHhccCCcc
Confidence            999998887765543

>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]

Probab=99.89  E-value=1.3e-22  Score=132.94  Aligned_cols=160  Identities=24%  Similarity=0.358  Sum_probs=129.3

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEE
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIIL   91 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   91 (211)
                      ++++||+++|..++|||||++.|.+.+.....|+.|.......+   ..++.+++||.+|+...+..|..++.+.|++||
T Consensus        15 ~rEirilllGldnAGKTT~LKqL~sED~~hltpT~GFn~k~v~~---~g~f~LnvwDiGGqr~IRpyWsNYyenvd~lIy   91 (185)
T KOG0074|consen   15 RREIRILLLGLDNAGKTTFLKQLKSEDPRHLTPTNGFNTKKVEY---DGTFHLNVWDIGGQRGIRPYWSNYYENVDGLIY   91 (185)
T ss_pred             cceEEEEEEecCCCcchhHHHHHccCChhhccccCCcceEEEee---cCcEEEEEEecCCccccchhhhhhhhccceEEE
Confidence            78999999999999999999999999888888999987775444   357899999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHH---HHHHHHHcCCeEEEeeccCCCcHHHH
Q 028300           92 VYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREE---GIALAKEHGSLFLECSAKTRENVEQC  168 (211)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~---~~~~~~~~~~~~~~~Sa~~~~gv~~l  168 (211)
                      |+|.+|...|+++...+.+++..- ....+|+.|.+||.|+.....+....   .....+..-+.+.++|+..++|+.+-
T Consensus        92 VIDS~D~krfeE~~~el~ELleee-Kl~~vpvlIfankQdlltaa~~eeia~klnl~~lrdRswhIq~csals~eg~~dg  170 (185)
T KOG0074|consen   92 VIDSTDEKRFEEISEELVELLEEE-KLAEVPVLIFANKQDLLTAAKVEEIALKLNLAGLRDRSWHIQECSALSLEGSTDG  170 (185)
T ss_pred             EEeCCchHhHHHHHHHHHHHhhhh-hhhccceeehhhhhHHHhhcchHHHHHhcchhhhhhceEEeeeCccccccCccCc
Confidence            999999988998877666666554 56789999999999986443322111   11112223456899999999999988


Q ss_pred             HHHHHHH
Q 028300          169 FEQLALK  175 (211)
Q Consensus       169 ~~~i~~~  175 (211)
                      .+|+...
T Consensus       171 ~~wv~sn  177 (185)
T KOG0074|consen  171 SDWVQSN  177 (185)
T ss_pred             chhhhcC
Confidence            8887653

>PRK15467 ethanolamine utilization protein EutP; Provisional

Probab=99.88  E-value=5.1e-22  Score=139.04  Aligned_cols=141  Identities=18%  Similarity=0.181  Sum_probs=98.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChh-----hhccchhhhccCCcEEE
Q 028300           16 KILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQE-----RFRTLTSSYYRGAQGII   90 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~-----~~~~~~~~~~~~~d~~i   90 (211)
                      +|+++|.+|+|||||++++.+.. .....+.+       ..+...    .+||+||..     .+..+ ...+.++|+++
T Consensus         3 ~i~~iG~~~~GKstl~~~l~~~~-~~~~~~~~-------v~~~~~----~~iDtpG~~~~~~~~~~~~-~~~~~~ad~il   69 (158)
T PRK15467          3 RIAFVGAVGAGKTTLFNALQGNY-TLARKTQA-------VEFNDK----GDIDTPGEYFSHPRWYHAL-ITTLQDVDMLI   69 (158)
T ss_pred             EEEEECCCCCCHHHHHHHHcCCC-ccCccceE-------EEECCC----CcccCCccccCCHHHHHHH-HHHHhcCCEEE
Confidence            79999999999999999987543 21111211       122222    269999962     22222 23478999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCC--eEEEeeccCCCcHHHH
Q 028300           91 LVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGS--LFLECSAKTRENVEQC  168 (211)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~--~~~~~Sa~~~~gv~~l  168 (211)
                      +|+|+++.+++...   |...+     ..++|+++++||+|+.+.   ..+...++....++  |++++||+++.|++++
T Consensus        70 ~v~d~~~~~s~~~~---~~~~~-----~~~~~ii~v~nK~Dl~~~---~~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l  138 (158)
T PRK15467         70 YVHGANDPESRLPA---GLLDI-----GVSKRQIAVISKTDMPDA---DVAATRKLLLETGFEEPIFELNSHDPQSVQQL  138 (158)
T ss_pred             EEEeCCCcccccCH---HHHhc-----cCCCCeEEEEEccccCcc---cHHHHHHHHHHcCCCCCEEEEECCCccCHHHH
Confidence            99999988765322   32222     236799999999998542   34555666666664  8999999999999999


Q ss_pred             HHHHHHHHHhcc
Q 028300          169 FEQLALKIMEVP  180 (211)
Q Consensus       169 ~~~i~~~~~~~~  180 (211)
                      |+++.+.+.+..
T Consensus       139 ~~~l~~~~~~~~  150 (158)
T PRK15467        139 VDYLASLTKQEE  150 (158)
T ss_pred             HHHHHHhchhhh
Confidence            999888765443

>COG1159 Era GTPase [General function prediction only]

Probab=99.88  E-value=9.4e-22  Score=145.45  Aligned_cols=169  Identities=21%  Similarity=0.155  Sum_probs=128.1

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhh--------ccchhhhc
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERF--------RTLTSSYY   83 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~--------~~~~~~~~   83 (211)
                      .+.--|+++|.||+|||||+|++.+......++-+.+++..+..-......++.|+||||...-        .......+
T Consensus         4 ~ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl   83 (298)
T COG1159           4 FKSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAARSAL   83 (298)
T ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcchHHHHHHHHHHHHHh
Confidence            4556799999999999999999999999888888888888877777667889999999994322        22345567


Q ss_pred             cCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcC-CeEEEeeccCC
Q 028300           84 RGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHG-SLFLECSAKTR  162 (211)
Q Consensus        84 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~-~~~~~~Sa~~~  162 (211)
                      ..+|+++||+|+++...-  -.....+.++.    .+.|+++++||+|..............+..... ..++++||+++
T Consensus        84 ~dvDlilfvvd~~~~~~~--~d~~il~~lk~----~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpiSA~~g  157 (298)
T COG1159          84 KDVDLILFVVDADEGWGP--GDEFILEQLKK----TKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPISALKG  157 (298)
T ss_pred             ccCcEEEEEEeccccCCc--cHHHHHHHHhh----cCCCeEEEEEccccCCcHHHHHHHHHHHHhhCCcceEEEeecccc
Confidence            889999999999984332  22213344432    478999999999986665422222222222333 26999999999


Q ss_pred             CcHHHHHHHHHHHHHhccchhccc
Q 028300          163 ENVEQCFEQLALKIMEVPSLLEEG  186 (211)
Q Consensus       163 ~gv~~l~~~i~~~~~~~~~~~~~~  186 (211)
                      .|++.+.+.+.+.+.+....+++.
T Consensus       158 ~n~~~L~~~i~~~Lpeg~~~yp~d  181 (298)
T COG1159         158 DNVDTLLEIIKEYLPEGPWYYPED  181 (298)
T ss_pred             CCHHHHHHHHHHhCCCCCCcCChh
Confidence            999999999999999998888766

>TIGR01393 lepA GTP-binding protein LepA

Probab=99.88  E-value=1.4e-21  Score=161.63  Aligned_cols=156  Identities=20%  Similarity=0.248  Sum_probs=114.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhhCC-------C-CCCCC------ccceeeEEEEEEE-----CCEEEEEEEEeCCChhhh
Q 028300           15 FKILLIGDSGVGKSSLLVSFISSS-------V-DDLSP------TIGVDFKIKLLTV-----AGKRLKLTIWDTAGQERF   75 (211)
Q Consensus        15 ~~I~v~G~~~~GKssli~~l~~~~-------~-~~~~~------~~~~~~~~~~~~~-----~~~~~~~~l~D~~g~~~~   75 (211)
                      -+|+++|++++|||||+++|+...       + ..+..      +.|.++....+.+     ++..+.+.||||||+.+|
T Consensus         4 RNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF   83 (595)
T TIGR01393         4 RNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDF   83 (595)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHH
Confidence            489999999999999999998652       2 12222      2355555433333     455689999999999999


Q ss_pred             ccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCC---
Q 028300           76 RTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGS---  152 (211)
Q Consensus        76 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~---  152 (211)
                      ...+...++.+|++|+|+|+++..+...... |....     ..++|+++|+||+|+....  ......++...++.   
T Consensus        84 ~~~v~~~l~~aD~aILVvDat~g~~~qt~~~-~~~~~-----~~~ipiIiViNKiDl~~~~--~~~~~~el~~~lg~~~~  155 (595)
T TIGR01393        84 SYEVSRSLAACEGALLLVDAAQGIEAQTLAN-VYLAL-----ENDLEIIPVINKIDLPSAD--PERVKKEIEEVIGLDAS  155 (595)
T ss_pred             HHHHHHHHHhCCEEEEEecCCCCCCHhHHHH-HHHHH-----HcCCCEEEEEECcCCCccC--HHHHHHHHHHHhCCCcc
Confidence            8888999999999999999998665555544 43322     2368999999999985432  11222334444554   


Q ss_pred             eEEEeeccCCCcHHHHHHHHHHHHHh
Q 028300          153 LFLECSAKTRENVEQCFEQLALKIME  178 (211)
Q Consensus       153 ~~~~~Sa~~~~gv~~l~~~i~~~~~~  178 (211)
                      .++++||++|.|++++|++|.+.+..
T Consensus       156 ~vi~vSAktG~GI~~Lle~I~~~lp~  181 (595)
T TIGR01393       156 EAILASAKTGIGIEEILEAIVKRVPP  181 (595)
T ss_pred             eEEEeeccCCCCHHHHHHHHHHhCCC
Confidence            48999999999999999999987654

LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=99.88  E-value=7.7e-22  Score=143.73  Aligned_cols=160  Identities=18%  Similarity=0.150  Sum_probs=100.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhhCCCCC--CCCccceeeEEEEEEEC-----------------------------C----
Q 028300           15 FKILLIGDSGVGKSSLLVSFISSSVDD--LSPTIGVDFKIKLLTVA-----------------------------G----   59 (211)
Q Consensus        15 ~~I~v~G~~~~GKssli~~l~~~~~~~--~~~~~~~~~~~~~~~~~-----------------------------~----   59 (211)
                      ++|+++|+.|+|||||+..+.....+.  .....+.+.......+.                             +    
T Consensus         1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (203)
T cd01888           1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK   80 (203)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence            589999999999999999997552111  00111111111000000                             0    


Q ss_pred             EEEEEEEEeCCChhhhccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccC
Q 028300           60 KRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVS  139 (211)
Q Consensus        60 ~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~  139 (211)
                      ....+.|||+||+..+...+...+..+|++++|+|++++.........+ ..+..   ....|+++|+||+|+.......
T Consensus        81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l-~~~~~---~~~~~iiivvNK~Dl~~~~~~~  156 (203)
T cd01888          81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHL-AALEI---MGLKHIIIVQNKIDLVKEEQAL  156 (203)
T ss_pred             cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHH-HHHHH---cCCCcEEEEEEchhccCHHHHH
Confidence            1267999999999988777778888999999999998731111111111 11121   1235789999999986432211


Q ss_pred             --HHHHHHHHHH---cCCeEEEeeccCCCcHHHHHHHHHHHHHh
Q 028300          140 --REEGIALAKE---HGSLFLECSAKTRENVEQCFEQLALKIME  178 (211)
Q Consensus       140 --~~~~~~~~~~---~~~~~~~~Sa~~~~gv~~l~~~i~~~~~~  178 (211)
                        .+....+...   .+++++++||+++.|++++|++|.+.+.+
T Consensus       157 ~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~  200 (203)
T cd01888         157 ENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIPT  200 (203)
T ss_pred             HHHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCCC
Confidence              1222333322   25689999999999999999999876544

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=99.88  E-value=1.2e-21  Score=154.47  Aligned_cols=168  Identities=18%  Similarity=0.126  Sum_probs=116.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCE-EEEEEEEeCCChhhhc-------cchhhhccCCc
Q 028300           16 KILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGK-RLKLTIWDTAGQERFR-------TLTSSYYRGAQ   87 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~D~~g~~~~~-------~~~~~~~~~~d   87 (211)
                      .|+|+|.||||||||+|+|++... ...+.++++.......+... ...+.|+|+||..+-.       ......+..+|
T Consensus       161 dValVG~PNaGKSTLln~Lt~~k~-~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~rad  239 (390)
T PRK12298        161 DVGLLGLPNAGKSTFIRAVSAAKP-KVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLKHLERCR  239 (390)
T ss_pred             cEEEEcCCCCCHHHHHHHHhCCcc-cccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHHHHHhCC
Confidence            799999999999999999997664 33444455544444433222 3468999999964311       11223477899


Q ss_pred             EEEEEEECC---ChhhHHHHHHHHHHHhhhhc-cCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcC--CeEEEeeccC
Q 028300           88 GIILVYDVT---RRETFTNLSDVWAKEVDLYS-TNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHG--SLFLECSAKT  161 (211)
Q Consensus        88 ~~i~v~d~~---~~~s~~~~~~~~~~~~~~~~-~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~--~~~~~~Sa~~  161 (211)
                      ++++|+|++   +.+.++.... |+..+..+. ...+.|+++|+||+|+.....+ .+....+....+  .+++.+||++
T Consensus       240 vlL~VVD~s~~~~~d~~e~~~~-l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el-~~~l~~l~~~~~~~~~Vi~ISA~t  317 (390)
T PRK12298        240 VLLHLIDIAPIDGSDPVENARI-IINELEKYSPKLAEKPRWLVFNKIDLLDEEEA-EERAKAIVEALGWEGPVYLISAAS  317 (390)
T ss_pred             EEEEEeccCcccccChHHHHHH-HHHHHHhhhhhhcCCCEEEEEeCCccCChHHH-HHHHHHHHHHhCCCCCEEEEECCC
Confidence            999999988   4455666655 666665542 1246899999999998654332 223333434433  4699999999


Q ss_pred             CCcHHHHHHHHHHHHHhccchhccc
Q 028300          162 RENVEQCFEQLALKIMEVPSLLEEG  186 (211)
Q Consensus       162 ~~gv~~l~~~i~~~~~~~~~~~~~~  186 (211)
                      +.|+++++++|.+.+.+....++..
T Consensus       318 g~GIdeLl~~I~~~L~~~~~~~~~~  342 (390)
T PRK12298        318 GLGVKELCWDLMTFIEENPREEAEE  342 (390)
T ss_pred             CcCHHHHHHHHHHHhhhCcccCCcc
Confidence            9999999999999998876665543

>cd01889 SelB_euk SelB subfamily

Probab=99.88  E-value=1.2e-21  Score=141.67  Aligned_cols=158  Identities=18%  Similarity=0.098  Sum_probs=101.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhhC----CCCCC------CCccceeeEEEEEE----------ECCEEEEEEEEeCCChhh
Q 028300           15 FKILLIGDSGVGKSSLLVSFISS----SVDDL------SPTIGVDFKIKLLT----------VAGKRLKLTIWDTAGQER   74 (211)
Q Consensus        15 ~~I~v~G~~~~GKssli~~l~~~----~~~~~------~~~~~~~~~~~~~~----------~~~~~~~~~l~D~~g~~~   74 (211)
                      ++|+++|++++|||||+++|+..    .++..      ..+.........+.          .......+.+||+||+..
T Consensus         1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~   80 (192)
T cd01889           1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS   80 (192)
T ss_pred             CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence            58999999999999999999973    11111      12222222222222          112367899999999876


Q ss_pred             hccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCccc--CHHHHHHHHH----
Q 028300           75 FRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVV--SREEGIALAK----  148 (211)
Q Consensus        75 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v--~~~~~~~~~~----  148 (211)
                      +..........+|++++|+|+++......... +. ...    ..+.|+++++||+|+......  ..++......    
T Consensus        81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~-~~-~~~----~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~  154 (192)
T cd01889          81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAEC-LV-IGE----ILCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLE  154 (192)
T ss_pred             HHHHHHHHHhhCCEEEEEEECCCCccHHHHHH-HH-HHH----HcCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHH
Confidence            54334445677899999999987443333222 21 111    126799999999998643221  1122222111    


Q ss_pred             ---HcCCeEEEeeccCCCcHHHHHHHHHHHHHh
Q 028300          149 ---EHGSLFLECSAKTRENVEQCFEQLALKIME  178 (211)
Q Consensus       149 ---~~~~~~~~~Sa~~~~gv~~l~~~i~~~~~~  178 (211)
                         ..+++++++||+++.|++++++++.+++..
T Consensus       155 ~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~~  187 (192)
T cd01889         155 KTRFKNSPIIPVSAKPGGGEAELGKDLNNLIVL  187 (192)
T ss_pred             hcCcCCCCEEEEeccCCCCHHHHHHHHHhcccc
Confidence               135789999999999999999999887643

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta)

Probab=99.88  E-value=5.1e-21  Score=139.28  Aligned_cols=120  Identities=18%  Similarity=0.304  Sum_probs=89.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCC-cEEEEEEE
Q 028300           16 KILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGA-QGIILVYD   94 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~-d~~i~v~d   94 (211)
                      +|+++|++|||||||+++|....+....++..................+.+||+||+..++..+..+++.+ +++|+|+|
T Consensus         2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD   81 (203)
T cd04105           2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSIEPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVVD   81 (203)
T ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCccCcEeecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEEE
Confidence            68999999999999999999987754444333222221221123457799999999999988888889998 99999999


Q ss_pred             CCCh-hhHHHHHHHHHHHhhhhc-cCCCccEEEEeecCCCCCC
Q 028300           95 VTRR-ETFTNLSDVWAKEVDLYS-TNQDCVKMLVGNKVDRDSE  135 (211)
Q Consensus        95 ~~~~-~s~~~~~~~~~~~~~~~~-~~~~~p~viv~nK~Dl~~~  135 (211)
                      +++. .++..+..++...+.... ...++|+++++||+|+...
T Consensus        82 ~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a  124 (203)
T cd04105          82 SATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTA  124 (203)
T ss_pred             CccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhccc
Confidence            9997 677777764555443321 2368999999999998543

SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=99.88  E-value=1.8e-21  Score=139.23  Aligned_cols=150  Identities=19%  Similarity=0.226  Sum_probs=102.4

Q ss_pred             CCCCceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChh----------hhc
Q 028300            8 SNSYDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQE----------RFR   76 (211)
Q Consensus         8 ~~~~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~----------~~~   76 (211)
                      ..+....++|+++|.+|+|||||++++++..+ ..+.++.+.+.....+..+.   .+.+||+||..          .+.
T Consensus        12 ~~~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~   88 (179)
T TIGR03598        12 QLPPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEKWQ   88 (179)
T ss_pred             hCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHHHH
Confidence            34557889999999999999999999998864 55566666666554444432   68999999942          233


Q ss_pred             cchhhhcc---CCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCccc--CHHHHHHHHHHcC
Q 028300           77 TLTSSYYR---GAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVV--SREEGIALAKEHG  151 (211)
Q Consensus        77 ~~~~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v--~~~~~~~~~~~~~  151 (211)
                      .+...+++   .+|++++|+|+++..+..+..  +...+.    ..++|+++++||+|+..+.+.  ..++.+......+
T Consensus        89 ~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~--~~~~~~----~~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~  162 (179)
T TIGR03598        89 KLIEEYLEKRENLKGVVLLMDIRHPLKELDLE--MLEWLR----ERGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDA  162 (179)
T ss_pred             HHHHHHHHhChhhcEEEEEecCCCCCCHHHHH--HHHHHH----HcCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhcc
Confidence            33334444   358999999998754444432  233333    247899999999998644322  2233344444433


Q ss_pred             --CeEEEeeccCCCcHH
Q 028300          152 --SLFLECSAKTRENVE  166 (211)
Q Consensus       152 --~~~~~~Sa~~~~gv~  166 (211)
                        ++++++||++++|++
T Consensus       163 ~~~~v~~~Sa~~g~gi~  179 (179)
T TIGR03598       163 DDPSVQLFSSLKKTGID  179 (179)
T ss_pred             CCCceEEEECCCCCCCC
Confidence              479999999999973

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>PRK11058 GTPase HflX; Provisional

Probab=99.88  E-value=1.3e-21  Score=155.89  Aligned_cols=157  Identities=20%  Similarity=0.151  Sum_probs=106.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhhCCCC-CCCCccceeeEEEEEEECCEEEEEEEEeCCChhhh--ccch------hhhccC
Q 028300           15 FKILLIGDSGVGKSSLLVSFISSSVD-DLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERF--RTLT------SSYYRG   85 (211)
Q Consensus        15 ~~I~v~G~~~~GKssli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~--~~~~------~~~~~~   85 (211)
                      .+|+++|.+|+|||||+|+|.+..+. ...+....+.....+.+.+ ...+.+|||+|....  ...+      ...+..
T Consensus       198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~-~~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~  276 (426)
T PRK11058        198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVAD-VGETVLADTVGFIRHLPHDLVAAFKATLQETRQ  276 (426)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCC-CCeEEEEecCcccccCCHHHHHHHHHHHHHhhc
Confidence            58999999999999999999987652 1112222222223333433 226789999997321  1112      234688


Q ss_pred             CcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCe-EEEeeccCCCc
Q 028300           86 AQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSL-FLECSAKTREN  164 (211)
Q Consensus        86 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~Sa~~~~g  164 (211)
                      +|++++|+|++++.+.+.+.. |...+... ...++|+++|+||+|+.+... .  ...  ....+.+ ++.+||++|.|
T Consensus       277 ADlIL~VvDaS~~~~~e~l~~-v~~iL~el-~~~~~pvIiV~NKiDL~~~~~-~--~~~--~~~~~~~~~v~ISAktG~G  349 (426)
T PRK11058        277 ATLLLHVVDAADVRVQENIEA-VNTVLEEI-DAHEIPTLLVMNKIDMLDDFE-P--RID--RDEENKPIRVWLSAQTGAG  349 (426)
T ss_pred             CCEEEEEEeCCCccHHHHHHH-HHHHHHHh-ccCCCCEEEEEEcccCCCchh-H--HHH--HHhcCCCceEEEeCCCCCC
Confidence            999999999999987777654 55555443 234789999999999854311 1  111  1123445 58899999999


Q ss_pred             HHHHHHHHHHHHHhc
Q 028300          165 VEQCFEQLALKIMEV  179 (211)
Q Consensus       165 v~~l~~~i~~~~~~~  179 (211)
                      +++++++|.+.+...
T Consensus       350 IdeL~e~I~~~l~~~  364 (426)
T PRK11058        350 IPLLFQALTERLSGE  364 (426)
T ss_pred             HHHHHHHHHHHhhhc
Confidence            999999999988543

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.88  E-value=1.5e-21  Score=157.50  Aligned_cols=152  Identities=22%  Similarity=0.180  Sum_probs=109.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCCh--------hhhccchhhhccCCc
Q 028300           16 KILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQ--------ERFRTLTSSYYRGAQ   87 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~--------~~~~~~~~~~~~~~d   87 (211)
                      +|+++|.+|||||||+|+|.+.........++++...........+..+.+|||||.        ..+.......++.+|
T Consensus         1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad   80 (429)
T TIGR03594         1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDDDGLDKQIREQAEIAIEEAD   80 (429)
T ss_pred             CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhCC
Confidence            589999999999999999998776555555666554444333334557999999995        333444566788999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCC-eEEEeeccCCCcHH
Q 028300           88 GIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGS-LFLECSAKTRENVE  166 (211)
Q Consensus        88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~gv~  166 (211)
                      ++++|+|+.+..+..+..  +...++.    .++|+++|+||+|+......    ..+ ...++. +++++||.+|.|++
T Consensus        81 ~vl~vvD~~~~~~~~d~~--i~~~l~~----~~~piilVvNK~D~~~~~~~----~~~-~~~lg~~~~~~vSa~~g~gv~  149 (429)
T TIGR03594        81 VILFVVDGREGLTPEDEE--IAKWLRK----SGKPVILVANKIDGKKEDAV----AAE-FYSLGFGEPIPISAEHGRGIG  149 (429)
T ss_pred             EEEEEEeCCCCCCHHHHH--HHHHHHH----hCCCEEEEEECccCCccccc----HHH-HHhcCCCCeEEEeCCcCCChH
Confidence            999999998754333221  3333332    37899999999998654321    112 234565 69999999999999


Q ss_pred             HHHHHHHHHHHh
Q 028300          167 QCFEQLALKIME  178 (211)
Q Consensus       167 ~l~~~i~~~~~~  178 (211)
                      ++++++.+.+.+
T Consensus       150 ~ll~~i~~~l~~  161 (429)
T TIGR03594       150 DLLDAILELLPE  161 (429)
T ss_pred             HHHHHHHHhcCc
Confidence            999999887754

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.88  E-value=1.3e-22  Score=133.35  Aligned_cols=163  Identities=23%  Similarity=0.323  Sum_probs=132.2

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEE
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIIL   91 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   91 (211)
                      +++.+|.++|.-|+|||++..++-.++.....|+++.....+.    ....++++||++|+-..+..|+-++.+.|++||
T Consensus        16 e~e~rililgldGaGkttIlyrlqvgevvttkPtigfnve~v~----yKNLk~~vwdLggqtSirPyWRcYy~dt~avIy   91 (182)
T KOG0072|consen   16 EREMRILILGLDGAGKTTILYRLQVGEVVTTKPTIGFNVETVP----YKNLKFQVWDLGGQTSIRPYWRCYYADTDAVIY   91 (182)
T ss_pred             ccceEEEEeeccCCCeeEEEEEcccCcccccCCCCCcCccccc----cccccceeeEccCcccccHHHHHHhcccceEEE
Confidence            4889999999999999999999999998888999998887444    367889999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCc---ccCHHHHHHHHHHcCCeEEEeeccCCCcHHHH
Q 028300           92 VYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSER---VVSREEGIALAKEHGSLFLECSAKTRENVEQC  168 (211)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~---~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l  168 (211)
                      |+|.+|.+...-....+..++.+- +..+..+++++||.|....-   ++......+..+..-+.+|++||.+++|++..
T Consensus        92 VVDssd~dris~a~~el~~mL~E~-eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~Gld~~  170 (182)
T KOG0072|consen   92 VVDSSDRDRISIAGVELYSMLQEE-ELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLKDRIWQIVKTSAVKGEGLDPA  170 (182)
T ss_pred             EEeccchhhhhhhHHHHHHHhccH-hhcCceEEEEeccccchhhhhHHHHHHHhChHHHhhheeEEEeeccccccCCcHH
Confidence            999999888777777677777654 44568889999999974321   11111122222334467999999999999999


Q ss_pred             HHHHHHHHHhc
Q 028300          169 FEQLALKIMEV  179 (211)
Q Consensus       169 ~~~i~~~~~~~  179 (211)
                      ++|+.+-+.+.
T Consensus       171 ~DWL~~~l~~~  181 (182)
T KOG0072|consen  171 MDWLQRPLKSR  181 (182)
T ss_pred             HHHHHHHHhcc
Confidence            99999887654

>TIGR00487 IF-2 translation initiation factor IF-2

Probab=99.87  E-value=6.8e-21  Score=156.95  Aligned_cols=152  Identities=18%  Similarity=0.252  Sum_probs=106.6

Q ss_pred             CCceeeEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcE
Q 028300           10 SYDLSFKILLIGDSGVGKSSLLVSFISSSVDD-LSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQG   88 (211)
Q Consensus        10 ~~~~~~~I~v~G~~~~GKssli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~   88 (211)
                      -..++.+|+++|++++|||||+++|.+..+.. ..+....+.....+.+.+. ..+.||||||+..|..++...+..+|+
T Consensus        83 ~~~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~-~~i~~iDTPGhe~F~~~r~rga~~aDi  161 (587)
T TIGR00487        83 LVERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDG-KMITFLDTPGHEAFTSMRARGAKVTDI  161 (587)
T ss_pred             cccCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCC-cEEEEEECCCCcchhhHHHhhhccCCE
Confidence            34577899999999999999999999877632 2222222222222333222 278999999999999888888999999


Q ss_pred             EEEEEECCCh---hhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHH-------cC--CeEEE
Q 028300           89 IILVYDVTRR---ETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKE-------HG--SLFLE  156 (211)
Q Consensus        89 ~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~-------~~--~~~~~  156 (211)
                      +++|+|+++.   ++.+.+     ...    ...++|+++++||+|+...   ..+........       ++  .++++
T Consensus       162 aILVVda~dgv~~qT~e~i-----~~~----~~~~vPiIVviNKiDl~~~---~~e~v~~~L~~~g~~~~~~~~~~~~v~  229 (587)
T TIGR00487       162 VVLVVAADDGVMPQTIEAI-----SHA----KAANVPIIVAINKIDKPEA---NPDRVKQELSEYGLVPEDWGGDTIFVP  229 (587)
T ss_pred             EEEEEECCCCCCHhHHHHH-----HHH----HHcCCCEEEEEECcccccC---CHHHHHHHHHHhhhhHHhcCCCceEEE
Confidence            9999999873   333222     111    2357899999999998543   22223222222       22  47999


Q ss_pred             eeccCCCcHHHHHHHHHH
Q 028300          157 CSAKTRENVEQCFEQLAL  174 (211)
Q Consensus       157 ~Sa~~~~gv~~l~~~i~~  174 (211)
                      +||++|.|++++|++|..
T Consensus       230 iSAktGeGI~eLl~~I~~  247 (587)
T TIGR00487       230 VSALTGDGIDELLDMILL  247 (587)
T ss_pred             EECCCCCChHHHHHhhhh
Confidence            999999999999999864

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.87  E-value=3.1e-21  Score=155.93  Aligned_cols=161  Identities=26%  Similarity=0.202  Sum_probs=113.6

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhcc----------c-hh
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRT----------L-TS   80 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~----------~-~~   80 (211)
                      ...++|+++|.+|+|||||+++|++.......+..+++.......+...+..+.+|||||......          . ..
T Consensus       171 ~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~  250 (435)
T PRK00093        171 DEPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTL  250 (435)
T ss_pred             ccceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHHH
Confidence            457999999999999999999999877544555667766665554444456788999999532111          1 12


Q ss_pred             hhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHH-HHHHH----cCCeEE
Q 028300           81 SYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGI-ALAKE----HGSLFL  155 (211)
Q Consensus        81 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~-~~~~~----~~~~~~  155 (211)
                      ..++.+|++|+|+|+++..+..+..  +...+.    ..++|+++|+||+|+.+...  ..+.. .+...    ..++++
T Consensus       251 ~~~~~ad~~ilViD~~~~~~~~~~~--i~~~~~----~~~~~~ivv~NK~Dl~~~~~--~~~~~~~~~~~l~~~~~~~i~  322 (435)
T PRK00093        251 KAIERADVVLLVIDATEGITEQDLR--IAGLAL----EAGRALVIVVNKWDLVDEKT--MEEFKKELRRRLPFLDYAPIV  322 (435)
T ss_pred             HHHHHCCEEEEEEeCCCCCCHHHHH--HHHHHH----HcCCcEEEEEECccCCCHHH--HHHHHHHHHHhcccccCCCEE
Confidence            3678899999999999876655543  333332    24789999999999863321  11111 11111    247899


Q ss_pred             EeeccCCCcHHHHHHHHHHHHHhcc
Q 028300          156 ECSAKTRENVEQCFEQLALKIMEVP  180 (211)
Q Consensus       156 ~~Sa~~~~gv~~l~~~i~~~~~~~~  180 (211)
                      ++||+++.|++++|+.+.+.+....
T Consensus       323 ~~SA~~~~gv~~l~~~i~~~~~~~~  347 (435)
T PRK00093        323 FISALTGQGVDKLLEAIDEAYENAN  347 (435)
T ss_pred             EEeCCCCCCHHHHHHHHHHHHHHHc
Confidence            9999999999999999988776554

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.87  E-value=2.6e-21  Score=156.39  Aligned_cols=150  Identities=21%  Similarity=0.155  Sum_probs=103.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhh--------hccchhhhccCC
Q 028300           15 FKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER--------FRTLTSSYYRGA   86 (211)
Q Consensus        15 ~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~--------~~~~~~~~~~~~   86 (211)
                      .+|+++|.+|||||||+++|.+.........++++...........+..+.+|||||...        +.......+..+
T Consensus         2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~a   81 (435)
T PRK00093          2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLGREFILIDTGGIEPDDDGFEKQIREQAELAIEEA   81 (435)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECCcEEEEEECCCCCCcchhHHHHHHHHHHHHHHhC
Confidence            589999999999999999999877543344445443333222222337899999999765        222345567899


Q ss_pred             cEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCe-EEEeeccCCCcH
Q 028300           87 QGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSL-FLECSAKTRENV  165 (211)
Q Consensus        87 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~Sa~~~~gv  165 (211)
                      |++|+|+|+++..+..+..  +...+..    .++|+++|+||+|+....    ....++ ..+++. ++++||.++.|+
T Consensus        82 d~il~vvd~~~~~~~~~~~--~~~~l~~----~~~piilv~NK~D~~~~~----~~~~~~-~~lg~~~~~~iSa~~g~gv  150 (435)
T PRK00093         82 DVILFVVDGRAGLTPADEE--IAKILRK----SNKPVILVVNKVDGPDEE----ADAYEF-YSLGLGEPYPISAEHGRGI  150 (435)
T ss_pred             CEEEEEEECCCCCCHHHHH--HHHHHHH----cCCcEEEEEECccCccch----hhHHHH-HhcCCCCCEEEEeeCCCCH
Confidence            9999999998754332221  2222222    278999999999974321    122222 345654 899999999999


Q ss_pred             HHHHHHHHHH
Q 028300          166 EQCFEQLALK  175 (211)
Q Consensus       166 ~~l~~~i~~~  175 (211)
                      ++++++|.+.
T Consensus       151 ~~l~~~I~~~  160 (435)
T PRK00093        151 GDLLDAILEE  160 (435)
T ss_pred             HHHHHHHHhh
Confidence            9999999883

>CHL00189 infB translation initiation factor 2; Provisional

Probab=99.87  E-value=6.2e-21  Score=159.50  Aligned_cols=154  Identities=17%  Similarity=0.219  Sum_probs=110.3

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHhhCCCCC-CC--CccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCc
Q 028300           11 YDLSFKILLIGDSGVGKSSLLVSFISSSVDD-LS--PTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQ   87 (211)
Q Consensus        11 ~~~~~~I~v~G~~~~GKssli~~l~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d   87 (211)
                      ..+..+|+|+|++++|||||+++|....+.. ..  .+.........+...+....+.||||||+..|..++...+..+|
T Consensus       241 ~~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aD  320 (742)
T CHL00189        241 INRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTD  320 (742)
T ss_pred             cccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCC
Confidence            4677899999999999999999999876632 11  12112222223333345688999999999999998988999999


Q ss_pred             EEEEEEECCCh---hhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHH-------HHHcC--CeEE
Q 028300           88 GIILVYDVTRR---ETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIAL-------AKEHG--SLFL  155 (211)
Q Consensus        88 ~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~-------~~~~~--~~~~  155 (211)
                      ++|+|+|+++.   ++++.+.     .+    ...++|+++++||+|+....   .......       ...++  ++++
T Consensus       321 iaILVVDA~dGv~~QT~E~I~-----~~----k~~~iPiIVViNKiDl~~~~---~e~v~~eL~~~~ll~e~~g~~vpvv  388 (742)
T CHL00189        321 IAILIIAADDGVKPQTIEAIN-----YI----QAANVPIIVAINKIDKANAN---TERIKQQLAKYNLIPEKWGGDTPMI  388 (742)
T ss_pred             EEEEEEECcCCCChhhHHHHH-----HH----HhcCceEEEEEECCCccccC---HHHHHHHHHHhccchHhhCCCceEE
Confidence            99999999874   3333322     11    23578999999999986532   1222111       12233  6899


Q ss_pred             EeeccCCCcHHHHHHHHHHHH
Q 028300          156 ECSAKTRENVEQCFEQLALKI  176 (211)
Q Consensus       156 ~~Sa~~~~gv~~l~~~i~~~~  176 (211)
                      ++||++|.|+++++++|....
T Consensus       389 ~VSAktG~GIdeLle~I~~l~  409 (742)
T CHL00189        389 PISASQGTNIDKLLETILLLA  409 (742)
T ss_pred             EEECCCCCCHHHHHHhhhhhh
Confidence            999999999999999987753

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=99.87  E-value=2.8e-21  Score=139.25  Aligned_cols=158  Identities=23%  Similarity=0.200  Sum_probs=105.7

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhhCCCCCCC-----------------CccceeeEEEEEEEC--CEEEEEEEEeCCChh
Q 028300           13 LSFKILLIGDSGVGKSSLLVSFISSSVDDLS-----------------PTIGVDFKIKLLTVA--GKRLKLTIWDTAGQE   73 (211)
Q Consensus        13 ~~~~I~v~G~~~~GKssli~~l~~~~~~~~~-----------------~~~~~~~~~~~~~~~--~~~~~~~l~D~~g~~   73 (211)
                      +.++|+++|+.++|||||+++|+........                 ...+.+.......+.  .....+.++|+||+.
T Consensus         2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~   81 (188)
T PF00009_consen    2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE   81 (188)
T ss_dssp             TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred             CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence            4579999999999999999999854421100                 011222222222332  456789999999999


Q ss_pred             hhccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCccc-CHHHHH-HHHHHc-
Q 028300           74 RFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVV-SREEGI-ALAKEH-  150 (211)
Q Consensus        74 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v-~~~~~~-~~~~~~-  150 (211)
                      +|.......+..+|++|+|+|+.+.-..... . ....+.    ..++|+++|+||+|+...+.. ..++.. .+.+.. 
T Consensus        82 ~f~~~~~~~~~~~D~ailvVda~~g~~~~~~-~-~l~~~~----~~~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~~  155 (188)
T PF00009_consen   82 DFIKEMIRGLRQADIAILVVDANDGIQPQTE-E-HLKILR----ELGIPIIVVLNKMDLIEKELEEIIEEIKEKLLKEYG  155 (188)
T ss_dssp             HHHHHHHHHHTTSSEEEEEEETTTBSTHHHH-H-HHHHHH----HTT-SEEEEEETCTSSHHHHHHHHHHHHHHHHHHTT
T ss_pred             ceeecccceecccccceeeeecccccccccc-c-cccccc----ccccceEEeeeeccchhhhHHHHHHHHHHHhccccc
Confidence            9888788889999999999999875332222 1 233333    348889999999998621110 011112 222222 


Q ss_pred             -----CCeEEEeeccCCCcHHHHHHHHHHHH
Q 028300          151 -----GSLFLECSAKTRENVEQCFEQLALKI  176 (211)
Q Consensus       151 -----~~~~~~~Sa~~~~gv~~l~~~i~~~~  176 (211)
                           .++++.+||.+|.|++++++.|.+.+
T Consensus       156 ~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~  186 (188)
T PF00009_consen  156 ENGEEIVPVIPISALTGDGIDELLEALVELL  186 (188)
T ss_dssp             STTTSTEEEEEEBTTTTBTHHHHHHHHHHHS
T ss_pred             cCccccceEEEEecCCCCCHHHHHHHHHHhC
Confidence                 25799999999999999999998765

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.86  E-value=7.6e-21  Score=161.14  Aligned_cols=159  Identities=21%  Similarity=0.153  Sum_probs=109.2

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEE--EEECCEEEEEEEEeCCChhh----------hccc-h
Q 028300           13 LSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKL--LTVAGKRLKLTIWDTAGQER----------FRTL-T   79 (211)
Q Consensus        13 ~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~D~~g~~~----------~~~~-~   79 (211)
                      ..++|+++|.+|||||||+|+|++.......+..+++.....  +.+++  ..+.+|||||..+          +..+ .
T Consensus       449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~--~~~~liDTaG~~~~~~~~~~~e~~~~~r~  526 (712)
T PRK09518        449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDG--EDWLFIDTAGIKRRQHKLTGAEYYSSLRT  526 (712)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECC--CEEEEEECCCcccCcccchhHHHHHHHHH
Confidence            458999999999999999999998875333334444444333  33444  3567999999531          2211 1


Q ss_pred             hhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHH-HH----cCCeE
Q 028300           80 SSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALA-KE----HGSLF  154 (211)
Q Consensus        80 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~-~~----~~~~~  154 (211)
                      ...++.+|++++|+|+++..+..+... + ..+.    ..++|+++|+||+|+.+...  .+...... ..    ..+++
T Consensus       527 ~~~i~~advvilViDat~~~s~~~~~i-~-~~~~----~~~~piIiV~NK~DL~~~~~--~~~~~~~~~~~l~~~~~~~i  598 (712)
T PRK09518        527 QAAIERSELALFLFDASQPISEQDLKV-M-SMAV----DAGRALVLVFNKWDLMDEFR--RQRLERLWKTEFDRVTWARR  598 (712)
T ss_pred             HHHhhcCCEEEEEEECCCCCCHHHHHH-H-HHHH----HcCCCEEEEEEchhcCChhH--HHHHHHHHHHhccCCCCCCE
Confidence            234788999999999999877776643 3 2222    24789999999999965322  11111111 11    13468


Q ss_pred             EEeeccCCCcHHHHHHHHHHHHHhccc
Q 028300          155 LECSAKTRENVEQCFEQLALKIMEVPS  181 (211)
Q Consensus       155 ~~~Sa~~~~gv~~l~~~i~~~~~~~~~  181 (211)
                      +.+||++|.|++++|+.+.+.+.+...
T Consensus       599 i~iSAktg~gv~~L~~~i~~~~~~~~~  625 (712)
T PRK09518        599 VNLSAKTGWHTNRLAPAMQEALESWDQ  625 (712)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHhcc
Confidence            999999999999999999998876544

>PRK05306 infB translation initiation factor IF-2; Validated

Probab=99.86  E-value=7.6e-21  Score=160.24  Aligned_cols=153  Identities=22%  Similarity=0.297  Sum_probs=108.5

Q ss_pred             CCceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEE
Q 028300           10 SYDLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGI   89 (211)
Q Consensus        10 ~~~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~   89 (211)
                      ...++..|+|+|+.++|||||+++|....+... ...+.+.....+.+...+..+.||||||+..|..++...+..+|++
T Consensus       286 ~~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~-e~~GIT~~iga~~v~~~~~~ItfiDTPGhe~F~~m~~rga~~aDia  364 (787)
T PRK05306        286 LVPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAG-EAGGITQHIGAYQVETNGGKITFLDTPGHEAFTAMRARGAQVTDIV  364 (787)
T ss_pred             cccCCCEEEEECCCCCCHHHHHHHHHhCCcccc-ccCceeeeccEEEEEECCEEEEEEECCCCccchhHHHhhhhhCCEE
Confidence            356888999999999999999999987766321 1223332222222222346789999999999998888889999999


Q ss_pred             EEEEECCCh---hhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHH-------HHHHcC--CeEEEe
Q 028300           90 ILVYDVTRR---ETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIA-------LAKEHG--SLFLEC  157 (211)
Q Consensus        90 i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~-------~~~~~~--~~~~~~  157 (211)
                      |+|||+++.   ++.+.+.     ..    ...++|+++++||+|+....   ......       +...++  ++++++
T Consensus       365 ILVVdAddGv~~qT~e~i~-----~a----~~~~vPiIVviNKiDl~~a~---~e~V~~eL~~~~~~~e~~g~~vp~vpv  432 (787)
T PRK05306        365 VLVVAADDGVMPQTIEAIN-----HA----KAAGVPIIVAINKIDKPGAN---PDRVKQELSEYGLVPEEWGGDTIFVPV  432 (787)
T ss_pred             EEEEECCCCCCHhHHHHHH-----HH----HhcCCcEEEEEECccccccC---HHHHHHHHHHhcccHHHhCCCceEEEE
Confidence            999999873   3333221     11    24579999999999985432   111111       122233  689999


Q ss_pred             eccCCCcHHHHHHHHHHH
Q 028300          158 SAKTRENVEQCFEQLALK  175 (211)
Q Consensus       158 Sa~~~~gv~~l~~~i~~~  175 (211)
                      ||++|.|++++|++|...
T Consensus       433 SAktG~GI~eLle~I~~~  450 (787)
T PRK05306        433 SAKTGEGIDELLEAILLQ  450 (787)
T ss_pred             eCCCCCCchHHHHhhhhh
Confidence            999999999999998753

>TIGR00475 selB selenocysteine-specific elongation factor SelB

Probab=99.86  E-value=1.4e-20  Score=155.69  Aligned_cols=155  Identities=19%  Similarity=0.236  Sum_probs=110.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhhCCC----CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEE
Q 028300           15 FKILLIGDSGVGKSSLLVSFISSSV----DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGII   90 (211)
Q Consensus        15 ~~I~v~G~~~~GKssli~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (211)
                      +.|+++|++++|||||+++|.+...    .+..+....+.....+...+  ..+.+||+||++.|.......+.++|+++
T Consensus         1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~~~~g~~~aD~aI   78 (581)
T TIGR00475         1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISNAIAGGGGIDAAL   78 (581)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHHHHhhhccCCEEE
Confidence            4799999999999999999996432    12222222233222333333  78999999999999877788889999999


Q ss_pred             EEEECCC---hhhHHHHHHHHHHHhhhhccCCCcc-EEEEeecCCCCCCcccC--HHHHHHHHHHc----CCeEEEeecc
Q 028300           91 LVYDVTR---RETFTNLSDVWAKEVDLYSTNQDCV-KMLVGNKVDRDSERVVS--REEGIALAKEH----GSLFLECSAK  160 (211)
Q Consensus        91 ~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~~p-~viv~nK~Dl~~~~~v~--~~~~~~~~~~~----~~~~~~~Sa~  160 (211)
                      +|+|+++   +++.+.+.     .+.    ..++| +++|+||+|+.+...+.  .++...+....    +++++++||+
T Consensus        79 LVVDa~~G~~~qT~ehl~-----il~----~lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~  149 (581)
T TIGR00475        79 LVVDADEGVMTQTGEHLA-----VLD----LLGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAK  149 (581)
T ss_pred             EEEECCCCCcHHHHHHHH-----HHH----HcCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCC
Confidence            9999998   44444432     122    23677 99999999996544321  23344444443    5789999999


Q ss_pred             CCCcHHHHHHHHHHHHHhcc
Q 028300          161 TRENVEQCFEQLALKIMEVP  180 (211)
Q Consensus       161 ~~~gv~~l~~~i~~~~~~~~  180 (211)
                      +|.|+++++++|.+.+....
T Consensus       150 tG~GI~eL~~~L~~l~~~~~  169 (581)
T TIGR00475       150 TGQGIGELKKELKNLLESLD  169 (581)
T ss_pred             CCCCchhHHHHHHHHHHhCC
Confidence            99999999999887665543

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.

>cd00880 Era_like Era (E

Probab=99.86  E-value=6.3e-21  Score=133.33  Aligned_cols=151  Identities=23%  Similarity=0.169  Sum_probs=104.1

Q ss_pred             EEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCE-EEEEEEEeCCChhhhcc-------chhhhccCCcEEE
Q 028300           19 LIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGK-RLKLTIWDTAGQERFRT-------LTSSYYRGAQGII   90 (211)
Q Consensus        19 v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~D~~g~~~~~~-------~~~~~~~~~d~~i   90 (211)
                      ++|++|+|||||++++.+..........+.+........... ...+.+||+||......       .....++.+|+++
T Consensus         1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il   80 (163)
T cd00880           1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREELARRVLERADLIL   80 (163)
T ss_pred             CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEEE
Confidence            589999999999999998766433333333333333222221 56799999999765432       3445788999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHH---HHHHHHHcCCeEEEeeccCCCcHHH
Q 028300           91 LVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREE---GIALAKEHGSLFLECSAKTRENVEQ  167 (211)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~---~~~~~~~~~~~~~~~Sa~~~~gv~~  167 (211)
                      +|+|+++........  +....    ...+.|+++|+||+|+..........   ........+++++++|+.++.|+++
T Consensus        81 ~v~~~~~~~~~~~~~--~~~~~----~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~  154 (163)
T cd00880          81 FVVDADLRADEEEEK--LLELL----RERGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDE  154 (163)
T ss_pred             EEEeCCCCCCHHHHH--HHHHH----HhcCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHH
Confidence            999999987665554  22222    24589999999999986554332221   1122223467899999999999999


Q ss_pred             HHHHHHHH
Q 028300          168 CFEQLALK  175 (211)
Q Consensus       168 l~~~i~~~  175 (211)
                      +++++.+.
T Consensus       155 l~~~l~~~  162 (163)
T cd00880         155 LREALIEA  162 (163)
T ss_pred             HHHHHHhh
Confidence            99998864

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>PRK09554 feoB ferrous iron transport protein B; Reviewed

Probab=99.86  E-value=2.1e-20  Score=158.25  Aligned_cols=154  Identities=17%  Similarity=0.136  Sum_probs=117.7

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccc----------hhhh
Q 028300           13 LSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTL----------TSSY   82 (211)
Q Consensus        13 ~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~----------~~~~   82 (211)
                      +.++|+++|+||+|||||+|++.+... .....+|+++......+...+..+.+||+||...+...          ...+
T Consensus         2 ~~~~IaLvG~pNvGKSTLfN~Ltg~~~-~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~   80 (772)
T PRK09554          2 KKLTIGLIGNPNSGKTTLFNQLTGARQ-RVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHY   80 (772)
T ss_pred             CceEEEEECCCCCCHHHHHHHHhCCCC-ccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHH
Confidence            357899999999999999999997655 44556888888777777777788999999997665421          1122


Q ss_pred             --ccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeecc
Q 028300           83 --YRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAK  160 (211)
Q Consensus        83 --~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~  160 (211)
                        ...+|++++|+|+++.+..   .. +...+..    .++|+++++||+|+.+.+.+. .+...+.+.++++++++|+.
T Consensus        81 l~~~~aD~vI~VvDat~ler~---l~-l~~ql~e----~giPvIvVlNK~Dl~~~~~i~-id~~~L~~~LG~pVvpiSA~  151 (772)
T PRK09554         81 ILSGDADLLINVVDASNLERN---LY-LTLQLLE----LGIPCIVALNMLDIAEKQNIR-IDIDALSARLGCPVIPLVST  151 (772)
T ss_pred             HhccCCCEEEEEecCCcchhh---HH-HHHHHHH----cCCCEEEEEEchhhhhccCcH-HHHHHHHHHhCCCEEEEEee
Confidence              2478999999999985432   22 3333332    379999999999986555443 34566777889999999999


Q ss_pred             CCCcHHHHHHHHHHHH
Q 028300          161 TRENVEQCFEQLALKI  176 (211)
Q Consensus       161 ~~~gv~~l~~~i~~~~  176 (211)
                      ++.|++++++.+.+..
T Consensus       152 ~g~GIdeL~~~I~~~~  167 (772)
T PRK09554        152 RGRGIEALKLAIDRHQ  167 (772)
T ss_pred             cCCCHHHHHHHHHHhh
Confidence            9999999999988765

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.86  E-value=1.3e-20  Score=159.72  Aligned_cols=156  Identities=16%  Similarity=0.119  Sum_probs=111.1

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhh--------hccchhhhc
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER--------FRTLTSSYY   83 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~--------~~~~~~~~~   83 (211)
                      ....+|+++|.+|+|||||+|+|++.......+.+|++...........+..+.+|||||...        +.......+
T Consensus       273 ~~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~  352 (712)
T PRK09518        273 KAVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQIAV  352 (712)
T ss_pred             ccCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHHHHHH
Confidence            345689999999999999999999877655666777776655544443456789999999653        223345567


Q ss_pred             cCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCC-eEEEeeccCC
Q 028300           84 RGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGS-LFLECSAKTR  162 (211)
Q Consensus        84 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~  162 (211)
                      ..+|++|+|+|+++.-.  .....|...+.    ..++|+++|+||+|+....    .....+. ..+. ..+++||++|
T Consensus       353 ~~aD~iL~VvDa~~~~~--~~d~~i~~~Lr----~~~~pvIlV~NK~D~~~~~----~~~~~~~-~lg~~~~~~iSA~~g  421 (712)
T PRK09518        353 SLADAVVFVVDGQVGLT--STDERIVRMLR----RAGKPVVLAVNKIDDQASE----YDAAEFW-KLGLGEPYPISAMHG  421 (712)
T ss_pred             HhCCEEEEEEECCCCCC--HHHHHHHHHHH----hcCCCEEEEEECcccccch----hhHHHHH-HcCCCCeEEEECCCC
Confidence            89999999999986322  22222545544    3589999999999985421    1112221 2232 3679999999


Q ss_pred             CcHHHHHHHHHHHHHh
Q 028300          163 ENVEQCFEQLALKIME  178 (211)
Q Consensus       163 ~gv~~l~~~i~~~~~~  178 (211)
                      .|+++++++|++.+.+
T Consensus       422 ~GI~eLl~~i~~~l~~  437 (712)
T PRK09518        422 RGVGDLLDEALDSLKV  437 (712)
T ss_pred             CCchHHHHHHHHhccc
Confidence            9999999999998755

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.85  E-value=2.1e-20  Score=145.64  Aligned_cols=165  Identities=23%  Similarity=0.172  Sum_probs=127.8

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhh----------hcc-chhh
Q 028300           13 LSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER----------FRT-LTSS   81 (211)
Q Consensus        13 ~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~----------~~~-~~~~   81 (211)
                      ..+||+++|.|++|||||+|++++.+-....+..|+++..+...++.....+.++||+|...          |.. -...
T Consensus       177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~  256 (444)
T COG1160         177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTLK  256 (444)
T ss_pred             CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhHh
Confidence            57999999999999999999999999888999999999999988887778899999999321          211 1234


Q ss_pred             hccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHH-----cCCeEEE
Q 028300           82 YYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKE-----HGSLFLE  156 (211)
Q Consensus        82 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~-----~~~~~~~  156 (211)
                      .+..+|++++|+|++++.+-++.+  ....+    ...+.+++||+||.|+.+.+....++.+.....     -.++++.
T Consensus       257 aI~~a~vvllviDa~~~~~~qD~~--ia~~i----~~~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~  330 (444)
T COG1160         257 AIERADVVLLVIDATEGISEQDLR--IAGLI----EEAGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVF  330 (444)
T ss_pred             HHhhcCEEEEEEECCCCchHHHHH--HHHHH----HHcCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEE
Confidence            677899999999999986655544  22222    356899999999999976644444333322221     2468999


Q ss_pred             eeccCCCcHHHHHHHHHHHHHhccchh
Q 028300          157 CSAKTRENVEQCFEQLALKIMEVPSLL  183 (211)
Q Consensus       157 ~Sa~~~~gv~~l~~~i~~~~~~~~~~~  183 (211)
                      +||.++.+++.+|+.+.+.........
T Consensus       331 iSA~~~~~i~~l~~~i~~~~~~~~~ri  357 (444)
T COG1160         331 ISALTGQGLDKLFEAIKEIYECATRRI  357 (444)
T ss_pred             EEecCCCChHHHHHHHHHHHHHhcccc
Confidence            999999999999999998887775443

>TIGR00437 feoB ferrous iron transporter FeoB

Probab=99.85  E-value=1.7e-20  Score=155.28  Aligned_cols=146  Identities=18%  Similarity=0.189  Sum_probs=104.5

Q ss_pred             cCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccc------hhhhc--cCCcEEEEE
Q 028300           21 GDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTL------TSSYY--RGAQGIILV   92 (211)
Q Consensus        21 G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~------~~~~~--~~~d~~i~v   92 (211)
                      |.+|+|||||+|++.+..+ ...+.++++.......+...+..+.+||+||+.++...      ...++  +.+|++++|
T Consensus         1 G~pNvGKSSL~N~Ltg~~~-~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~V   79 (591)
T TIGR00437         1 GNPNVGKSTLFNALTGANQ-TVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVNV   79 (591)
T ss_pred             CCCCCCHHHHHHHHhCCCC-eecCCCCeEEEEEEEEEEECCeEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEEE
Confidence            8999999999999998765 23344555555444333333456899999998776543      23332  478999999


Q ss_pred             EECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHHHHH
Q 028300           93 YDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQL  172 (211)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i  172 (211)
                      +|.++.+.   ... +...+.    ..++|+++|+||+|+.+...+. .+...+.+.++++++++||+++.|++++++++
T Consensus        80 vDat~ler---~l~-l~~ql~----~~~~PiIIVlNK~Dl~~~~~i~-~d~~~L~~~lg~pvv~tSA~tg~Gi~eL~~~i  150 (591)
T TIGR00437        80 VDASNLER---NLY-LTLQLL----ELGIPMILALNLVDEAEKKGIR-IDEEKLEERLGVPVVPTSATEGRGIERLKDAI  150 (591)
T ss_pred             ecCCcchh---hHH-HHHHHH----hcCCCEEEEEehhHHHHhCCCh-hhHHHHHHHcCCCEEEEECCCCCCHHHHHHHH
Confidence            99987542   222 222222    2479999999999986555444 34566777889999999999999999999999


Q ss_pred             HHHH
Q 028300          173 ALKI  176 (211)
Q Consensus       173 ~~~~  176 (211)
                      .+..
T Consensus       151 ~~~~  154 (591)
T TIGR00437       151 RKAI  154 (591)
T ss_pred             HHHh
Confidence            8754

FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.85  E-value=1.5e-20  Score=146.39  Aligned_cols=152  Identities=20%  Similarity=0.112  Sum_probs=115.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhc---------cchhhhccC
Q 028300           15 FKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFR---------TLTSSYYRG   85 (211)
Q Consensus        15 ~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~---------~~~~~~~~~   85 (211)
                      ..|+++|.||||||||+|+|.+.....+..++|+++..........+..+.++||+|.+...         ......+..
T Consensus         4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~e   83 (444)
T COG1160           4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAIEE   83 (444)
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHHh
Confidence            67999999999999999999999998888999998887776666667779999999965322         224557789


Q ss_pred             CcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCC-eEEEeeccCCCc
Q 028300           86 AQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGS-LFLECSAKTREN  164 (211)
Q Consensus        86 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~g  164 (211)
                      +|++|||+|....-+-.+  ..+...+.    ..++|+++|+||+|....     +.....+..+|. .++.+||.+|.|
T Consensus        84 ADvilfvVD~~~Git~~D--~~ia~~Lr----~~~kpviLvvNK~D~~~~-----e~~~~efyslG~g~~~~ISA~Hg~G  152 (444)
T COG1160          84 ADVILFVVDGREGITPAD--EEIAKILR----RSKKPVILVVNKIDNLKA-----EELAYEFYSLGFGEPVPISAEHGRG  152 (444)
T ss_pred             CCEEEEEEeCCCCCCHHH--HHHHHHHH----hcCCCEEEEEEcccCchh-----hhhHHHHHhcCCCCceEeehhhccC
Confidence            999999999887322222  11334443    347999999999996421     222222334554 599999999999


Q ss_pred             HHHHHHHHHHHHH
Q 028300          165 VEQCFEQLALKIM  177 (211)
Q Consensus       165 v~~l~~~i~~~~~  177 (211)
                      +.++++++++.+.
T Consensus       153 i~dLld~v~~~l~  165 (444)
T COG1160         153 IGDLLDAVLELLP  165 (444)
T ss_pred             HHHHHHHHHhhcC
Confidence            9999999999874

>COG0486 ThdF Predicted GTPase [General function prediction only]

Probab=99.85  E-value=2.6e-20  Score=145.48  Aligned_cols=159  Identities=20%  Similarity=0.201  Sum_probs=124.9

Q ss_pred             CCCceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccc--------hh
Q 028300            9 NSYDLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTL--------TS   80 (211)
Q Consensus         9 ~~~~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~--------~~   80 (211)
                      ..-..-++|+++|.||+|||||+|.|++.+-..+++.+|+++......++-.++.+.+.||+|..+-...        ..
T Consensus       212 ~ilr~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~iGIeRs~  291 (454)
T COG0486         212 KILREGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERIGIERAK  291 (454)
T ss_pred             hhhhcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCEEEEEEecCCcccCccHHHHHHHHHHH
Confidence            3345678999999999999999999999999999999999999999988888899999999995443322        34


Q ss_pred             hhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeecc
Q 028300           81 SYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAK  160 (211)
Q Consensus        81 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~  160 (211)
                      ..+.++|.+++|+|.+.+.+-.+...++       ....+.|+++|.||.|+..+......     ....+.+++.+|++
T Consensus       292 ~~i~~ADlvL~v~D~~~~~~~~d~~~~~-------~~~~~~~~i~v~NK~DL~~~~~~~~~-----~~~~~~~~i~iSa~  359 (454)
T COG0486         292 KAIEEADLVLFVLDASQPLDKEDLALIE-------LLPKKKPIIVVLNKADLVSKIELESE-----KLANGDAIISISAK  359 (454)
T ss_pred             HHHHhCCEEEEEEeCCCCCchhhHHHHH-------hcccCCCEEEEEechhcccccccchh-----hccCCCceEEEEec
Confidence            5678999999999999963333333212       13568999999999999765432211     11234469999999


Q ss_pred             CCCcHHHHHHHHHHHHHhc
Q 028300          161 TRENVEQCFEQLALKIMEV  179 (211)
Q Consensus       161 ~~~gv~~l~~~i~~~~~~~  179 (211)
                      ++.|++.+.+.|.+.+...
T Consensus       360 t~~Gl~~L~~~i~~~~~~~  378 (454)
T COG0486         360 TGEGLDALREAIKQLFGKG  378 (454)
T ss_pred             CccCHHHHHHHHHHHHhhc
Confidence            9999999999998887776

>PRK12317 elongation factor 1-alpha; Reviewed

Probab=99.85  E-value=2e-20  Score=150.49  Aligned_cols=156  Identities=19%  Similarity=0.121  Sum_probs=105.2

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHhhCCCC------------------------------CCCCccceeeEEEEEEECCE
Q 028300           11 YDLSFKILLIGDSGVGKSSLLVSFISSSVD------------------------------DLSPTIGVDFKIKLLTVAGK   60 (211)
Q Consensus        11 ~~~~~~I~v~G~~~~GKssli~~l~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~   60 (211)
                      ....++|+++|++++|||||+++|+...-.                              ......|++.......+...
T Consensus         3 ~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~   82 (425)
T PRK12317          3 EKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETD   82 (425)
T ss_pred             CCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecC
Confidence            356799999999999999999999843211                              01114566666666677777


Q ss_pred             EEEEEEEeCCChhhhccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcc---
Q 028300           61 RLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERV---  137 (211)
Q Consensus        61 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~---  137 (211)
                      ...+.||||||+.+|.......+..+|++++|+|+++...+......+...+...   ...|+++++||+|+.+...   
T Consensus        83 ~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~---~~~~iivviNK~Dl~~~~~~~~  159 (425)
T PRK12317         83 KYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTL---GINQLIVAINKMDAVNYDEKRY  159 (425)
T ss_pred             CeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHc---CCCeEEEEEEccccccccHHHH
Confidence            8899999999998876555556789999999999987322211111122222221   2346999999999864221   


Q ss_pred             -cCHHHHHHHHHHcC-----CeEEEeeccCCCcHHHHH
Q 028300          138 -VSREEGIALAKEHG-----SLFLECSAKTRENVEQCF  169 (211)
Q Consensus       138 -v~~~~~~~~~~~~~-----~~~~~~Sa~~~~gv~~l~  169 (211)
                       ...++...+....+     ++++++||++|.|+++.+
T Consensus       160 ~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~  197 (425)
T PRK12317        160 EEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKS  197 (425)
T ss_pred             HHHHHHHHHHHHhhCCCcCcceEEEeecccCCCccccc
Confidence             11233444444444     579999999999998754

>PRK05433 GTP-binding protein LepA; Provisional

Probab=99.84  E-value=7.9e-20  Score=151.48  Aligned_cols=159  Identities=21%  Similarity=0.228  Sum_probs=112.0

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhhCC--CC------CC------CCccceeeEEEEEEE-----CCEEEEEEEEeCCChh
Q 028300           13 LSFKILLIGDSGVGKSSLLVSFISSS--VD------DL------SPTIGVDFKIKLLTV-----AGKRLKLTIWDTAGQE   73 (211)
Q Consensus        13 ~~~~I~v~G~~~~GKssli~~l~~~~--~~------~~------~~~~~~~~~~~~~~~-----~~~~~~~~l~D~~g~~   73 (211)
                      +--+|+++|+.++|||||+.+|+...  ..      .+      ..+.|.+.......+     ++..+.+.||||||+.
T Consensus         6 ~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~   85 (600)
T PRK05433          6 NIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHV   85 (600)
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcH
Confidence            34589999999999999999998632  11      01      112344443332222     4557899999999999


Q ss_pred             hhccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCC-
Q 028300           74 RFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGS-  152 (211)
Q Consensus        74 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~-  152 (211)
                      +|...+...++.+|++|+|+|+++......... |....     ..++|+++|+||+|+.....  .....++...+++ 
T Consensus        86 dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~-~~~~~-----~~~lpiIvViNKiDl~~a~~--~~v~~ei~~~lg~~  157 (600)
T PRK05433         86 DFSYEVSRSLAACEGALLVVDASQGVEAQTLAN-VYLAL-----ENDLEIIPVLNKIDLPAADP--ERVKQEIEDVIGID  157 (600)
T ss_pred             HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHH-HHHHH-----HCCCCEEEEEECCCCCcccH--HHHHHHHHHHhCCC
Confidence            998888899999999999999998654444333 33221     24789999999999854321  1112233333454 


Q ss_pred             --eEEEeeccCCCcHHHHHHHHHHHHHhc
Q 028300          153 --LFLECSAKTRENVEQCFEQLALKIMEV  179 (211)
Q Consensus       153 --~~~~~Sa~~~~gv~~l~~~i~~~~~~~  179 (211)
                        .++.+||++|.|+++++++|.+.+...
T Consensus       158 ~~~vi~iSAktG~GI~~Ll~~I~~~lp~P  186 (600)
T PRK05433        158 ASDAVLVSAKTGIGIEEVLEAIVERIPPP  186 (600)
T ss_pred             cceEEEEecCCCCCHHHHHHHHHHhCccc
Confidence              389999999999999999999876543

>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=99.83  E-value=1.5e-19  Score=133.62  Aligned_cols=173  Identities=20%  Similarity=0.191  Sum_probs=124.6

Q ss_pred             CCCceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChh------hh------c
Q 028300            9 NSYDLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQE------RF------R   76 (211)
Q Consensus         9 ~~~~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~------~~------~   76 (211)
                      ....+..+|+++|.||+|||||.|.+.+........-..++.......+.....++.|+||||.-      .+      -
T Consensus        67 ~e~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~l  146 (379)
T KOG1423|consen   67 EEAQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVL  146 (379)
T ss_pred             hhcceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhh
Confidence            44578899999999999999999999999987777777777777777777778899999999921      11      1


Q ss_pred             cchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCc-------------ccC--HH
Q 028300           77 TLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSER-------------VVS--RE  141 (211)
Q Consensus        77 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~-------------~v~--~~  141 (211)
                      ......+.++|.+++++|+++.-..-+-+  .+..+..+   ..+|-++|+||.|....+             .+.  ..
T Consensus       147 q~~~~a~q~AD~vvVv~Das~tr~~l~p~--vl~~l~~y---s~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl  221 (379)
T KOG1423|consen  147 QNPRDAAQNADCVVVVVDASATRTPLHPR--VLHMLEEY---SKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKL  221 (379)
T ss_pred             hCHHHHHhhCCEEEEEEeccCCcCccChH--HHHHHHHH---hcCCceeeccchhcchhhhHHhhhHHhccccccchhhh
Confidence            12345678899999999999632211111  33344433   578999999999974332             111  11


Q ss_pred             HHHHHHHHc----------CC----eEEEeeccCCCcHHHHHHHHHHHHHhccchhccc
Q 028300          142 EGIALAKEH----------GS----LFLECSAKTRENVEQCFEQLALKIMEVPSLLEEG  186 (211)
Q Consensus       142 ~~~~~~~~~----------~~----~~~~~Sa~~~~gv~~l~~~i~~~~~~~~~~~~~~  186 (211)
                      +.++.+...          ++    .+|.+||++|+||+++-++|+..+......++..
T Consensus       222 ~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~gpW~y~a~  280 (379)
T KOG1423|consen  222 EVQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPPGPWKYPAD  280 (379)
T ss_pred             hHHHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCCCCCCCCcc
Confidence            112211111          23    2899999999999999999999999988887765

>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.83  E-value=1.2e-20  Score=128.03  Aligned_cols=161  Identities=27%  Similarity=0.401  Sum_probs=122.6

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhhCCC--------CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhc
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFISSSV--------DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYY   83 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~   83 (211)
                      ...+.|+++|+-++|||||+.++.....        ....++.|-...    +++-....+.|||.+|++..+++|..++
T Consensus        15 Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig----~i~v~~~~l~fwdlgGQe~lrSlw~~yY   90 (197)
T KOG0076|consen   15 KEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIG----TIEVCNAPLSFWDLGGQESLRSLWKKYY   90 (197)
T ss_pred             hhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeec----ceeeccceeEEEEcCChHHHHHHHHHHH
Confidence            4567899999999999999998763321        223344444443    2222356789999999999999999999


Q ss_pred             cCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHH---HHc---CCeEEEe
Q 028300           84 RGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALA---KEH---GSLFLEC  157 (211)
Q Consensus        84 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~---~~~---~~~~~~~  157 (211)
                      .-++++|+++|+++++.++.....+...+. .-...++|+++.+||.|+.+...  ..++....   ...   ..++.++
T Consensus        91 ~~~H~ii~viDa~~~eR~~~~~t~~~~v~~-~E~leg~p~L~lankqd~q~~~~--~~El~~~~~~~e~~~~rd~~~~pv  167 (197)
T KOG0076|consen   91 WLAHGIIYVIDATDRERFEESKTAFEKVVE-NEKLEGAPVLVLANKQDLQNAME--AAELDGVFGLAELIPRRDNPFQPV  167 (197)
T ss_pred             HHhceeEEeecCCCHHHHHHHHHHHHHHHH-HHHhcCCchhhhcchhhhhhhhh--HHHHHHHhhhhhhcCCccCccccc
Confidence            999999999999999999988874444443 33578999999999999865433  23332222   222   3469999


Q ss_pred             eccCCCcHHHHHHHHHHHHHhc
Q 028300          158 SAKTRENVEQCFEQLALKIMEV  179 (211)
Q Consensus       158 Sa~~~~gv~~l~~~i~~~~~~~  179 (211)
                      ||.+|+||++...|+...+.++
T Consensus       168 Sal~gegv~egi~w~v~~~~kn  189 (197)
T KOG0076|consen  168 SALTGEGVKEGIEWLVKKLEKN  189 (197)
T ss_pred             hhhhcccHHHHHHHHHHHHhhc
Confidence            9999999999999999998877

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=99.83  E-value=5.2e-20  Score=134.59  Aligned_cols=148  Identities=20%  Similarity=0.174  Sum_probs=96.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCCCCCC------------------------------CCccceeeEEEEEEECCEEEEEE
Q 028300           16 KILLIGDSGVGKSSLLVSFISSSVDDL------------------------------SPTIGVDFKIKLLTVAGKRLKLT   65 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~~~   65 (211)
                      ||+++|++|+|||||+++|+...-...                              ....+++.......+...+..+.
T Consensus         1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~   80 (208)
T cd04166           1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI   80 (208)
T ss_pred             CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence            689999999999999999975432111                              01134455555555555667889


Q ss_pred             EEeCCChhhhccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCccc----CHH
Q 028300           66 IWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVV----SRE  141 (211)
Q Consensus        66 l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v----~~~  141 (211)
                      ||||||+.+|.......+..+|++++|+|+++...-.. .. ....+...   ...++++|+||+|+.+....    ...
T Consensus        81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~-~~-~~~~~~~~---~~~~iIvviNK~D~~~~~~~~~~~i~~  155 (208)
T cd04166          81 IADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQT-RR-HSYILSLL---GIRHVVVAVNKMDLVDYSEEVFEEIVA  155 (208)
T ss_pred             EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhH-HH-HHHHHHHc---CCCcEEEEEEchhcccCCHHHHHHHHH
Confidence            99999998876556667889999999999987532111 11 11222211   22457889999998643221    112


Q ss_pred             HHHHHHHHcC---CeEEEeeccCCCcHHHH
Q 028300          142 EGIALAKEHG---SLFLECSAKTRENVEQC  168 (211)
Q Consensus       142 ~~~~~~~~~~---~~~~~~Sa~~~~gv~~l  168 (211)
                      +...+...++   .+++.+||+++.|+.+.
T Consensus       156 ~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~  185 (208)
T cd04166         156 DYLAFAAKLGIEDITFIPISALDGDNVVSR  185 (208)
T ss_pred             HHHHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence            3334444555   45999999999999753

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha

Probab=99.83  E-value=1e-19  Score=146.34  Aligned_cols=156  Identities=20%  Similarity=0.147  Sum_probs=105.6

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHhhC--CCCC----------------------------CCCccceeeEEEEEEECCE
Q 028300           11 YDLSFKILLIGDSGVGKSSLLVSFISS--SVDD----------------------------LSPTIGVDFKIKLLTVAGK   60 (211)
Q Consensus        11 ~~~~~~I~v~G~~~~GKssli~~l~~~--~~~~----------------------------~~~~~~~~~~~~~~~~~~~   60 (211)
                      ....++|+++|++++|||||+++|+..  ....                            .....+.+.......+...
T Consensus         4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~   83 (426)
T TIGR00483         4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETD   83 (426)
T ss_pred             CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccC
Confidence            345689999999999999999999852  1110                            0112355555555566667


Q ss_pred             EEEEEEEeCCChhhhccchhhhccCCcEEEEEEECCChhhHHHHHHH-HHHHhhhhccCCCccEEEEeecCCCCCCccc-
Q 028300           61 RLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDV-WAKEVDLYSTNQDCVKMLVGNKVDRDSERVV-  138 (211)
Q Consensus        61 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~-~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v-  138 (211)
                      .+.+.|||+||+.+|.......+..+|++++|+|+++.++....... +......   ....|+++++||+|+.+.... 
T Consensus        84 ~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~---~~~~~iIVviNK~Dl~~~~~~~  160 (426)
T TIGR00483        84 KYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLART---LGINQLIVAINKMDSVNYDEEE  160 (426)
T ss_pred             CeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHH---cCCCeEEEEEEChhccCccHHH
Confidence            78999999999988866566667899999999999987533211110 1111221   223579999999999642221 


Q ss_pred             ---CHHHHHHHHHHcC-----CeEEEeeccCCCcHHHHH
Q 028300          139 ---SREEGIALAKEHG-----SLFLECSAKTRENVEQCF  169 (211)
Q Consensus       139 ---~~~~~~~~~~~~~-----~~~~~~Sa~~~~gv~~l~  169 (211)
                         ...+...++...+     ++++++||+++.|+.+.+
T Consensus       161 ~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~  199 (426)
T TIGR00483       161 FEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKS  199 (426)
T ss_pred             HHHHHHHHHHHHHHcCCCcccceEEEeeccccccccccc
Confidence               1234445555544     579999999999998744

This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.

>COG2229 Predicted GTPase [General function prediction only]

Probab=99.83  E-value=7.7e-19  Score=120.85  Aligned_cols=159  Identities=22%  Similarity=0.233  Sum_probs=116.7

Q ss_pred             CCceeeEEEEEcCCCCcHHHHHHHHhhCCCCCC-----C-CccceeeEEEEEEE----CCEEEEEEEEeCCChhhhccch
Q 028300           10 SYDLSFKILLIGDSGVGKSSLLVSFISSSVDDL-----S-PTIGVDFKIKLLTV----AGKRLKLTIWDTAGQERFRTLT   79 (211)
Q Consensus        10 ~~~~~~~I~v~G~~~~GKssli~~l~~~~~~~~-----~-~~~~~~~~~~~~~~----~~~~~~~~l~D~~g~~~~~~~~   79 (211)
                      ....+.||+|.|+.++||||++++++.......     . ...+.....+.+.+    .+.+..+.++++|||.+|.-+|
T Consensus         6 ~k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~RF~fm~   85 (187)
T COG2229           6 NKMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQERFKFMW   85 (187)
T ss_pred             ccccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCCcHHHHHHH
Confidence            446788999999999999999999997763111     0 01110001111111    1234678999999999999999


Q ss_pred             hhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHc--CCeEEEe
Q 028300           80 SSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEH--GSLFLEC  157 (211)
Q Consensus        80 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~--~~~~~~~  157 (211)
                      ....+.++++|+++|.+.+..+ .... ++..+...   ..+|++|++||.|+.+..  +.+.++++....  ..++++.
T Consensus        86 ~~l~~ga~gaivlVDss~~~~~-~a~~-ii~f~~~~---~~ip~vVa~NK~DL~~a~--ppe~i~e~l~~~~~~~~vi~~  158 (187)
T COG2229          86 EILSRGAVGAIVLVDSSRPITF-HAEE-IIDFLTSR---NPIPVVVAINKQDLFDAL--PPEKIREALKLELLSVPVIEI  158 (187)
T ss_pred             HHHhCCcceEEEEEecCCCcch-HHHH-HHHHHhhc---cCCCEEEEeeccccCCCC--CHHHHHHHHHhccCCCceeee
Confidence            9999999999999999998887 4443 45555433   239999999999996654  555555555544  7899999


Q ss_pred             eccCCCcHHHHHHHHHHH
Q 028300          158 SAKTRENVEQCFEQLALK  175 (211)
Q Consensus       158 Sa~~~~gv~~l~~~i~~~  175 (211)
                      ++.+++++.+.++.++..
T Consensus       159 ~a~e~~~~~~~L~~ll~~  176 (187)
T COG2229         159 DATEGEGARDQLDVLLLK  176 (187)
T ss_pred             ecccchhHHHHHHHHHhh
Confidence            999999999988887765

>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins

Probab=99.82  E-value=6.6e-19  Score=130.60  Aligned_cols=152  Identities=23%  Similarity=0.152  Sum_probs=97.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhc-------cchhhhccCCcE
Q 028300           16 KILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFR-------TLTSSYYRGAQG   88 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~-------~~~~~~~~~~d~   88 (211)
                      +|+++|++|+|||||+++|.+..... ....+++.......+...+..+++||+||..+..       ......++++|+
T Consensus         2 ~v~lvG~~~~GKStLl~~Ltg~~~~v-~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad~   80 (233)
T cd01896           2 RVALVGFPSVGKSTLLSKLTNTKSEV-AAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADGKGRGRQVIAVARTADL   80 (233)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCccc-cCCCCccccceEEEEEECCeEEEEEECCCcccccccchhHHHHHHHhhccCCE
Confidence            78999999999999999999875321 1112222222222222245678999999964322       123457889999


Q ss_pred             EEEEEECCChh-hHHHHHHHHHHH-----------------------------------------hhhh---c-------
Q 028300           89 IILVYDVTRRE-TFTNLSDVWAKE-----------------------------------------VDLY---S-------  116 (211)
Q Consensus        89 ~i~v~d~~~~~-s~~~~~~~~~~~-----------------------------------------~~~~---~-------  116 (211)
                      +++|+|+++.+ ....+.. .+..                                         +..+   .       
T Consensus        81 il~V~D~t~~~~~~~~~~~-~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~  159 (233)
T cd01896          81 ILMVLDATKPEGHREILER-ELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIRE  159 (233)
T ss_pred             EEEEecCCcchhHHHHHHH-HHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEcc
Confidence            99999998765 3333322 1111                                         1100   0       


Q ss_pred             -----------c--CCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHHHHHHHHH
Q 028300          117 -----------T--NQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKI  176 (211)
Q Consensus       117 -----------~--~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~~  176 (211)
                                 .  ..-+|+++|+||+|+...     ++...++.  ..+++++||+++.|++++|+.|.+.+
T Consensus       160 ~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~~-----~~~~~~~~--~~~~~~~SA~~g~gi~~l~~~i~~~L  225 (233)
T cd01896         160 DITVDDLIDVIEGNRVYIPCLYVYNKIDLISI-----EELDLLAR--QPNSVVISAEKGLNLDELKERIWDKL  225 (233)
T ss_pred             CCCHHHHHHHHhCCceEeeEEEEEECccCCCH-----HHHHHHhc--CCCEEEEcCCCCCCHHHHHHHHHHHh
Confidence                       0  123689999999998532     33333333  24589999999999999999988755

GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.

>cd01884 EF_Tu EF-Tu subfamily

Probab=99.82  E-value=9e-19  Score=126.32  Aligned_cols=146  Identities=14%  Similarity=0.062  Sum_probs=100.2

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhhCCC---------------CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccc
Q 028300           14 SFKILLIGDSGVGKSSLLVSFISSSV---------------DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTL   78 (211)
Q Consensus        14 ~~~I~v~G~~~~GKssli~~l~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~   78 (211)
                      .++|+++|+.++|||||+++|+....               .......+.+.......+.....++.|+||||+..+...
T Consensus         2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~   81 (195)
T cd01884           2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKN   81 (195)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHH
Confidence            58999999999999999999985411               011124456666666666666778999999999888776


Q ss_pred             hhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCcc-EEEEeecCCCCCCcccC---HHHHHHHHHHc----
Q 028300           79 TSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCV-KMLVGNKVDRDSERVVS---REEGIALAKEH----  150 (211)
Q Consensus        79 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p-~viv~nK~Dl~~~~~v~---~~~~~~~~~~~----  150 (211)
                      ....+..+|++++|+|+...-.-. ... ....+.    ..++| +++++||+|+.......   ..++..+....    
T Consensus        82 ~~~~~~~~D~~ilVvda~~g~~~~-~~~-~~~~~~----~~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~  155 (195)
T cd01884          82 MITGAAQMDGAILVVSATDGPMPQ-TRE-HLLLAR----QVGVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDG  155 (195)
T ss_pred             HHHHhhhCCEEEEEEECCCCCcHH-HHH-HHHHHH----HcCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhcccc
Confidence            777888999999999998642211 111 222332    23566 77899999985332211   12344444443    


Q ss_pred             -CCeEEEeeccCCCcH
Q 028300          151 -GSLFLECSAKTRENV  165 (211)
Q Consensus       151 -~~~~~~~Sa~~~~gv  165 (211)
                       +++++++||++|.++
T Consensus       156 ~~v~iipiSa~~g~n~  171 (195)
T cd01884         156 DNTPIVRGSALKALEG  171 (195)
T ss_pred             cCCeEEEeeCccccCC
Confidence             368999999999875

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA

Probab=99.82  E-value=2.7e-19  Score=147.91  Aligned_cols=158  Identities=18%  Similarity=0.200  Sum_probs=113.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC--CCCCC-------------CCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchh
Q 028300           16 KILLIGDSGVGKSSLLVSFISS--SVDDL-------------SPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTS   80 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~--~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~   80 (211)
                      +|+++|+.++|||||+++|+..  .+...             ....|.+.......+...+..+.||||||+.+|...+.
T Consensus         3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev~   82 (594)
T TIGR01394         3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEVE   82 (594)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHHH
Confidence            7999999999999999999863  23111             12335566555555555678999999999999988889


Q ss_pred             hhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccC-HHHHHHHHH-------HcCC
Q 028300           81 SYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVS-REEGIALAK-------EHGS  152 (211)
Q Consensus        81 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~-~~~~~~~~~-------~~~~  152 (211)
                      ..++.+|++++|+|+++.. ...... |...+..    .++|+++|+||+|+...+... ..+...+..       +..+
T Consensus        83 ~~l~~aD~alLVVDa~~G~-~~qT~~-~l~~a~~----~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~  156 (594)
T TIGR01394        83 RVLGMVDGVLLLVDASEGP-MPQTRF-VLKKALE----LGLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLDF  156 (594)
T ss_pred             HHHHhCCEEEEEEeCCCCC-cHHHHH-HHHHHHH----CCCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccccC
Confidence            9999999999999998632 223333 4333332    478999999999986543211 222333332       2357


Q ss_pred             eEEEeeccCCC----------cHHHHHHHHHHHHHhc
Q 028300          153 LFLECSAKTRE----------NVEQCFEQLALKIMEV  179 (211)
Q Consensus       153 ~~~~~Sa~~~~----------gv~~l~~~i~~~~~~~  179 (211)
                      |++.+||+++.          |+..+|+.|++.+...
T Consensus       157 pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~P  193 (594)
T TIGR01394       157 PIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPAP  193 (594)
T ss_pred             cEEechhhcCcccccCcccccCHHHHHHHHHHhCCCC
Confidence            89999999995          7999999998877544

This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.

>PRK10218 GTP-binding protein; Provisional

Probab=99.81  E-value=1.2e-18  Score=143.91  Aligned_cols=161  Identities=17%  Similarity=0.160  Sum_probs=115.7

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhh--CCCCC-------------CCCccceeeEEEEEEECCEEEEEEEEeCCChhhhcc
Q 028300           13 LSFKILLIGDSGVGKSSLLVSFIS--SSVDD-------------LSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRT   77 (211)
Q Consensus        13 ~~~~I~v~G~~~~GKssli~~l~~--~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~   77 (211)
                      +-.+|+++|+.++|||||+++|+.  +.+..             ...+.+.++......+...+..+.+||+||+.+|..
T Consensus         4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~   83 (607)
T PRK10218          4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGG   83 (607)
T ss_pred             CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHH
Confidence            346899999999999999999996  33321             123456777766667777788999999999999998


Q ss_pred             chhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCccc-CHHHHHHHHH-------H
Q 028300           78 LTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVV-SREEGIALAK-------E  149 (211)
Q Consensus        78 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v-~~~~~~~~~~-------~  149 (211)
                      .+..+++.+|++++|+|+++.... .... +...+.    ..++|.++++||+|+...+.. ...+...+..       .
T Consensus        84 ~v~~~l~~aDg~ILVVDa~~G~~~-qt~~-~l~~a~----~~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~  157 (607)
T PRK10218         84 EVERVMSMVDSVLLVVDAFDGPMP-QTRF-VTKKAF----AYGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQ  157 (607)
T ss_pred             HHHHHHHhCCEEEEEEecccCccH-HHHH-HHHHHH----HcCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCccccc
Confidence            899999999999999999874222 2222 222222    247899999999998644321 1122333321       2


Q ss_pred             cCCeEEEeeccCCC----------cHHHHHHHHHHHHHhc
Q 028300          150 HGSLFLECSAKTRE----------NVEQCFEQLALKIMEV  179 (211)
Q Consensus       150 ~~~~~~~~Sa~~~~----------gv~~l~~~i~~~~~~~  179 (211)
                      ..+|++.+||.+|.          |+..+++.|++.+...
T Consensus       158 ~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~P  197 (607)
T PRK10218        158 LDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAP  197 (607)
T ss_pred             cCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCCCC
Confidence            35789999999998          6888888888776543

>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma

Probab=99.81  E-value=3.8e-19  Score=141.99  Aligned_cols=162  Identities=17%  Similarity=0.164  Sum_probs=104.0

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCC--ccceeeEEE--------------------EEEECC------EEEE
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFISSSVDDLSP--TIGVDFKIK--------------------LLTVAG------KRLK   63 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~--~~~~~~~~~--------------------~~~~~~------~~~~   63 (211)
                      ...++|+++|++++|||||+++|.+...+....  ..+.+...-                    ....+.      ....
T Consensus         2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (406)
T TIGR03680         2 QPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR   81 (406)
T ss_pred             CceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence            357899999999999999999997542211111  111111100                    000011      1467


Q ss_pred             EEEEeCCChhhhccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCccc--CHH
Q 028300           64 LTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVV--SRE  141 (211)
Q Consensus        64 ~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v--~~~  141 (211)
                      +.+||+||+++|...+...+..+|++++|+|+++......... .+..+..   ....|+++++||+|+.+....  ..+
T Consensus        82 i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e-~l~~l~~---~gi~~iIVvvNK~Dl~~~~~~~~~~~  157 (406)
T TIGR03680        82 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKE-HLMALEI---IGIKNIVIVQNKIDLVSKEKALENYE  157 (406)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHH-HHHHHHH---cCCCeEEEEEEccccCCHHHHHHHHH
Confidence            8999999999998777888889999999999996421111111 1112221   223578999999998654321  122


Q ss_pred             HHHHHHHHc---CCeEEEeeccCCCcHHHHHHHHHHHHH
Q 028300          142 EGIALAKEH---GSLFLECSAKTRENVEQCFEQLALKIM  177 (211)
Q Consensus       142 ~~~~~~~~~---~~~~~~~Sa~~~~gv~~l~~~i~~~~~  177 (211)
                      +...+....   +++++++||+++.|+++++++|...+.
T Consensus       158 ~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~  196 (406)
T TIGR03680       158 EIKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFIP  196 (406)
T ss_pred             HHHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCC
Confidence            333333332   578999999999999999999987654

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.

>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2

Probab=99.81  E-value=7.9e-19  Score=144.63  Aligned_cols=154  Identities=23%  Similarity=0.169  Sum_probs=102.3

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhhCCCCCC-----CCccceeeEEEEEEE------------CCEEEEEEEEeCCChhhhc
Q 028300           14 SFKILLIGDSGVGKSSLLVSFISSSVDDL-----SPTIGVDFKIKLLTV------------AGKRLKLTIWDTAGQERFR   76 (211)
Q Consensus        14 ~~~I~v~G~~~~GKssli~~l~~~~~~~~-----~~~~~~~~~~~~~~~------------~~~~~~~~l~D~~g~~~~~   76 (211)
                      +.-|+++|++++|||||+++|.+..+...     +.+.+..+.......            ......+.||||||++.|.
T Consensus         4 ~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~   83 (590)
T TIGR00491         4 SPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFT   83 (590)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHH
Confidence            45699999999999999999998776321     122232222111100            0011238899999999999


Q ss_pred             cchhhhccCCcEEEEEEECCC---hhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCccc------------CHH
Q 028300           77 TLTSSYYRGAQGIILVYDVTR---RETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVV------------SRE  141 (211)
Q Consensus        77 ~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v------------~~~  141 (211)
                      .++...++.+|++++|+|+++   +++++.+..     +.    ..++|+++++||+|+.+....            ...
T Consensus        84 ~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~-----l~----~~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~  154 (590)
T TIGR00491        84 NLRKRGGALADLAILIVDINEGFKPQTQEALNI-----LR----MYKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEI  154 (590)
T ss_pred             HHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHH-----HH----HcCCCEEEEEECCCccchhhhccCchHHHHHHhhhH
Confidence            888889999999999999987   444444321     22    237899999999998532110            000


Q ss_pred             HH------------HHHHH------------Hc--CCeEEEeeccCCCcHHHHHHHHHHHH
Q 028300          142 EG------------IALAK------------EH--GSLFLECSAKTRENVEQCFEQLALKI  176 (211)
Q Consensus       142 ~~------------~~~~~------------~~--~~~~~~~Sa~~~~gv~~l~~~i~~~~  176 (211)
                      ..            .++..            .+  .++++++||++|+|+++++.+|....
T Consensus       155 ~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~  215 (590)
T TIGR00491       155 QVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLA  215 (590)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHH
Confidence            00            01110            11  35799999999999999999887543

This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.

>cd04168 TetM_like Tet(M)-like subfamily

Probab=99.81  E-value=9.7e-19  Score=129.89  Aligned_cols=113  Identities=19%  Similarity=0.198  Sum_probs=81.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCCCC--------------CC---CCccceeeEEEEEEECCEEEEEEEEeCCChhhhccc
Q 028300           16 KILLIGDSGVGKSSLLVSFISSSVD--------------DL---SPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTL   78 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~~~~--------------~~---~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~   78 (211)
                      +|+++|++|+|||||+++|+...-.              ..   ....+.+.......+...+.++.+|||||+.+|...
T Consensus         1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~   80 (237)
T cd04168           1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE   80 (237)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence            5899999999999999999864210              00   112233444444455556788999999999988888


Q ss_pred             hhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCC
Q 028300           79 TSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDS  134 (211)
Q Consensus        79 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~  134 (211)
                      +...++.+|++++|+|+++.... .... +...+..    .++|+++++||+|+..
T Consensus        81 ~~~~l~~aD~~IlVvd~~~g~~~-~~~~-~~~~~~~----~~~P~iivvNK~D~~~  130 (237)
T cd04168          81 VERSLSVLDGAILVISAVEGVQA-QTRI-LWRLLRK----LNIPTIIFVNKIDRAG  130 (237)
T ss_pred             HHHHHHHhCeEEEEEeCCCCCCH-HHHH-HHHHHHH----cCCCEEEEEECccccC
Confidence            88899999999999999986432 2222 3333332    4789999999999853

Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=99.81  E-value=1.4e-18  Score=122.70  Aligned_cols=151  Identities=21%  Similarity=0.229  Sum_probs=98.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhh----------hccchhhhcc
Q 028300           16 KILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER----------FRTLTSSYYR   84 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~----------~~~~~~~~~~   84 (211)
                      .|+++|++|+|||||++.+.+..+ ....++.+.+.....+..+.   .+.+||+||...          +......++.
T Consensus         1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~   77 (170)
T cd01876           1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE   77 (170)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence            389999999999999999996555 55556666655544444333   889999999432          3333333333


Q ss_pred             ---CCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCH--HHHHHHHH--HcCCeEEEe
Q 028300           85 ---GAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSR--EEGIALAK--EHGSLFLEC  157 (211)
Q Consensus        85 ---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~--~~~~~~~~--~~~~~~~~~  157 (211)
                         +.+++++++|..+..+.....  ....+..    .+.|+++++||+|+........  ........  ....+++++
T Consensus        78 ~~~~~~~~~~v~d~~~~~~~~~~~--~~~~l~~----~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  151 (170)
T cd01876          78 NRENLKGVVLLIDSRHGPTEIDLE--MLDWLEE----LGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILF  151 (170)
T ss_pred             hChhhhEEEEEEEcCcCCCHhHHH--HHHHHHH----cCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEE
Confidence               457899999988653222211  2222222    2589999999999854332211  11222222  234579999


Q ss_pred             eccCCCcHHHHHHHHHHH
Q 028300          158 SAKTRENVEQCFEQLALK  175 (211)
Q Consensus       158 Sa~~~~gv~~l~~~i~~~  175 (211)
                      |++++.|+.+++++|.+.
T Consensus       152 Sa~~~~~~~~l~~~l~~~  169 (170)
T cd01876         152 SSLKGQGIDELRALIEKW  169 (170)
T ss_pred             ecCCCCCHHHHHHHHHHh
Confidence            999999999999998764

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.80  E-value=2.5e-19  Score=123.33  Aligned_cols=167  Identities=31%  Similarity=0.555  Sum_probs=138.4

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEE
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGII   90 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (211)
                      -..++++++|..|.|||+++++++-++| ..+.++.|...+...+.-+...+.+..||+.|++.+..+...++=+.-..+
T Consensus         8 ~~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAi   87 (216)
T KOG0096|consen    8 GLTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAI   87 (216)
T ss_pred             cceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeE
Confidence            4678999999999999999999999999 568899999888777655555799999999999999988888888899999


Q ss_pred             EEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHHH
Q 028300           91 LVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFE  170 (211)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~  170 (211)
                      +.||++....+.++.. |...+...  ..++|+++++||.|..... +. .+...+.+..+..|+++|++.+.+.+.-|-
T Consensus        88 imFdVtsr~t~~n~~r-whrd~~rv--~~NiPiv~cGNKvDi~~r~-~k-~k~v~~~rkknl~y~~iSaksn~NfekPFl  162 (216)
T KOG0096|consen   88 IMFDVTSRFTYKNVPR-WHRDLVRV--RENIPIVLCGNKVDIKARK-VK-AKPVSFHRKKNLQYYEISAKSNYNFERPFL  162 (216)
T ss_pred             EEeeeeehhhhhcchH-HHHHHHHH--hcCCCeeeeccceeccccc-cc-cccceeeecccceeEEeecccccccccchH
Confidence            9999999999999988 66555443  5679999999999985432 11 122334455677899999999999999999


Q ss_pred             HHHHHHHhccchh
Q 028300          171 QLALKIMEVPSLL  183 (211)
Q Consensus       171 ~i~~~~~~~~~~~  183 (211)
                      |+..++.....+.
T Consensus       163 ~LarKl~G~p~Le  175 (216)
T KOG0096|consen  163 WLARKLTGDPSLE  175 (216)
T ss_pred             HHhhhhcCCCCeE
Confidence            9999988876553

>PRK04000 translation initiation factor IF-2 subunit gamma; Validated

Probab=99.80  E-value=9.3e-19  Score=139.71  Aligned_cols=159  Identities=21%  Similarity=0.210  Sum_probs=102.6

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCC--CccceeeEEE----E------------EE----EC--C----EEE
Q 028300           11 YDLSFKILLIGDSGVGKSSLLVSFISSSVDDLS--PTIGVDFKIK----L------------LT----VA--G----KRL   62 (211)
Q Consensus        11 ~~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~--~~~~~~~~~~----~------------~~----~~--~----~~~   62 (211)
                      ....++|+++|+.++|||||+.+|.+...+...  ...+.+....    .            +.    ..  +    ...
T Consensus         6 ~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (411)
T PRK04000          6 VQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLR   85 (411)
T ss_pred             CCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCcccccccccccccccccccccc
Confidence            456799999999999999999999654221111  1122222110    0            00    00  0    135


Q ss_pred             EEEEEeCCChhhhccchhhhccCCcEEEEEEECCChh----hHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCccc
Q 028300           63 KLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRE----TFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVV  138 (211)
Q Consensus        63 ~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~----s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v  138 (211)
                      .+.|||+||+.+|.......+..+|++++|+|++++.    +.+.+.     .+..   ....|+++|+||+|+.+....
T Consensus        86 ~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~-----~l~~---~~i~~iiVVlNK~Dl~~~~~~  157 (411)
T PRK04000         86 RVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLM-----ALDI---IGIKNIVIVQNKIDLVSKERA  157 (411)
T ss_pred             EEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHH-----HHHH---cCCCcEEEEEEeeccccchhH
Confidence            7899999999988766666667889999999999642    222221     1221   123478999999998654322


Q ss_pred             C--HHHHHHHHHH---cCCeEEEeeccCCCcHHHHHHHHHHHHH
Q 028300          139 S--REEGIALAKE---HGSLFLECSAKTRENVEQCFEQLALKIM  177 (211)
Q Consensus       139 ~--~~~~~~~~~~---~~~~~~~~Sa~~~~gv~~l~~~i~~~~~  177 (211)
                      .  .++...+...   .+.+++++||+++.|+++++++|.+.+.
T Consensus       158 ~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~  201 (411)
T PRK04000        158 LENYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIP  201 (411)
T ss_pred             HHHHHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCC
Confidence            1  2233333332   2478999999999999999999987664

>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional

Probab=99.80  E-value=3.2e-18  Score=142.22  Aligned_cols=155  Identities=19%  Similarity=0.199  Sum_probs=103.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhhCCCCCCC--CccceeeEEEEEEEC-CEEEEEEEEeCCChhhhccchhhhccCCcEEEE
Q 028300           15 FKILLIGDSGVGKSSLLVSFISSSVDDLS--PTIGVDFKIKLLTVA-GKRLKLTIWDTAGQERFRTLTSSYYRGAQGIIL   91 (211)
Q Consensus        15 ~~I~v~G~~~~GKssli~~l~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   91 (211)
                      +-|+++|++++|||||+++|.+...+...  ...|.+.......+. ..+..+.|||+||++.|.......+..+|++++
T Consensus         1 ~ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lL   80 (614)
T PRK10512          1 MIIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEKFLSNMLAGVGGIDHALL   80 (614)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHHHHHHHHHHHhhcCCEEEE
Confidence            35899999999999999999865432211  123444333222221 123458999999999987666777899999999


Q ss_pred             EEECCC---hhhHHHHHHHHHHHhhhhccCCCcc-EEEEeecCCCCCCcccC--HHHHHHHHHHcC---CeEEEeeccCC
Q 028300           92 VYDVTR---RETFTNLSDVWAKEVDLYSTNQDCV-KMLVGNKVDRDSERVVS--REEGIALAKEHG---SLFLECSAKTR  162 (211)
Q Consensus        92 v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~~p-~viv~nK~Dl~~~~~v~--~~~~~~~~~~~~---~~~~~~Sa~~~  162 (211)
                      |+|+++   +++.+.+.     .+.    ..++| +++|+||+|+.+.....  .++...+....+   ++++++||++|
T Consensus        81 VVda~eg~~~qT~ehl~-----il~----~lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG  151 (614)
T PRK10512         81 VVACDDGVMAQTREHLA-----ILQ----LTGNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEG  151 (614)
T ss_pred             EEECCCCCcHHHHHHHH-----HHH----HcCCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCC
Confidence            999987   33333322     222    22455 57999999986533221  223334443333   68999999999


Q ss_pred             CcHHHHHHHHHHHHHh
Q 028300          163 ENVEQCFEQLALKIME  178 (211)
Q Consensus       163 ~gv~~l~~~i~~~~~~  178 (211)
                      .|++++++.|.+....
T Consensus       152 ~gI~~L~~~L~~~~~~  167 (614)
T PRK10512        152 RGIDALREHLLQLPER  167 (614)
T ss_pred             CCCHHHHHHHHHhhcc
Confidence            9999999998875443

>COG0218 Predicted GTPase [General function prediction only]

Probab=99.80  E-value=6.7e-18  Score=118.76  Aligned_cols=162  Identities=19%  Similarity=0.214  Sum_probs=115.5

Q ss_pred             CCCCceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCC----------hhhhc
Q 028300            8 SNSYDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAG----------QERFR   76 (211)
Q Consensus         8 ~~~~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g----------~~~~~   76 (211)
                      .-+.+...-|+++|.+|||||||||+|++..- .....++|.+.....+.+++.   +.++|.||          .+.+.
T Consensus        18 ~~P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~w~   94 (200)
T COG0218          18 QYPEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEKWK   94 (200)
T ss_pred             hCCCCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHHHH
Confidence            34445677899999999999999999999764 888889999998888887664   78899999          23444


Q ss_pred             cchhhhcc---CCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCH--HHHH-HHHHHc
Q 028300           77 TLTSSYYR---GAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSR--EEGI-ALAKEH  150 (211)
Q Consensus        77 ~~~~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~--~~~~-~~~~~~  150 (211)
                      .+...++.   +..++++++|+..+-.-.+.  .+.+.+.    ..++|++|++||+|.....+...  .... .+....
T Consensus        95 ~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~--em~~~l~----~~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~~  168 (200)
T COG0218          95 KLIEEYLEKRANLKGVVLLIDARHPPKDLDR--EMIEFLL----ELGIPVIVVLTKADKLKKSERNKQLNKVAEELKKPP  168 (200)
T ss_pred             HHHHHHHhhchhheEEEEEEECCCCCcHHHH--HHHHHHH----HcCCCeEEEEEccccCChhHHHHHHHHHHHHhcCCC
Confidence            45555554   34788999998875433222  2444444    45999999999999876544332  1122 111112


Q ss_pred             CCe--EEEeeccCCCcHHHHHHHHHHHHHh
Q 028300          151 GSL--FLECSAKTRENVEQCFEQLALKIME  178 (211)
Q Consensus       151 ~~~--~~~~Sa~~~~gv~~l~~~i~~~~~~  178 (211)
                      ...  ++..|+..+.|++++...|.+.+..
T Consensus       169 ~~~~~~~~~ss~~k~Gi~~l~~~i~~~~~~  198 (200)
T COG0218         169 PDDQWVVLFSSLKKKGIDELKAKILEWLKE  198 (200)
T ss_pred             CccceEEEEecccccCHHHHHHHHHHHhhc
Confidence            222  7889999999999999998887654

>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]

Probab=99.80  E-value=5.6e-21  Score=131.02  Aligned_cols=171  Identities=35%  Similarity=0.558  Sum_probs=140.9

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCE-EEEEEEEeCCChhhhccchhhhccCCcE
Q 028300           11 YDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGK-RLKLTIWDTAGQERFRTLTSSYYRGAQG   88 (211)
Q Consensus        11 ~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~l~D~~g~~~~~~~~~~~~~~~d~   88 (211)
                      -+.-+++.|+|.-|+|||+++.++....| ..+..+.|.++.......+.. -+.+.|||+.|++++..+..-+++.+.+
T Consensus        22 r~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~  101 (229)
T KOG4423|consen   22 REHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHG  101 (229)
T ss_pred             hhhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcc
Confidence            35668999999999999999999998888 677788888877666655543 3678999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHhhhhcc---CCCccEEEEeecCCCCCCccc-CHHHHHHHHHHcCCe-EEEeeccCCC
Q 028300           89 IILVYDVTRRETFTNLSDVWAKEVDLYST---NQDCVKMLVGNKVDRDSERVV-SREEGIALAKEHGSL-FLECSAKTRE  163 (211)
Q Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~~~p~viv~nK~Dl~~~~~v-~~~~~~~~~~~~~~~-~~~~Sa~~~~  163 (211)
                      .++|||++....|+.... |.+.+.....   ....|+++.+||+|....... ......++.+.+++. .+++|++.+.
T Consensus       102 ~~iVfdvt~s~tfe~~sk-wkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf~gwtets~Kenk  180 (229)
T KOG4423|consen  102 AFIVFDVTRSLTFEPVSK-WKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGFEGWTETSAKENK  180 (229)
T ss_pred             eEEEEEccccccccHHHH-HHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCccceeeecccccc
Confidence            999999999999999998 9888865432   346788999999998543221 235566777788864 9999999999


Q ss_pred             cHHHHHHHHHHHHHhccch
Q 028300          164 NVEQCFEQLALKIMEVPSL  182 (211)
Q Consensus       164 gv~~l~~~i~~~~~~~~~~  182 (211)
                      +++|+...+++.++-+...
T Consensus       181 ni~Ea~r~lVe~~lvnd~q  199 (229)
T KOG4423|consen  181 NIPEAQRELVEKILVNDEQ  199 (229)
T ss_pred             ChhHHHHHHHHHHHhhccC
Confidence            9999999999988777643

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=99.79  E-value=2.3e-18  Score=115.93  Aligned_cols=135  Identities=24%  Similarity=0.259  Sum_probs=95.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChh----hhccchhhhccCCcEEEE
Q 028300           16 KILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQE----RFRTLTSSYYRGAQGIIL   91 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~----~~~~~~~~~~~~~d~~i~   91 (211)
                      ||.++|+.|+|||||+++|.+.+. .+..|....+.            =.++||||.-    .+..........+|.+++
T Consensus         3 rimliG~~g~GKTTL~q~L~~~~~-~~~KTq~i~~~------------~~~IDTPGEyiE~~~~y~aLi~ta~dad~V~l   69 (143)
T PF10662_consen    3 RIMLIGPSGSGKTTLAQALNGEEI-RYKKTQAIEYY------------DNTIDTPGEYIENPRFYHALIVTAQDADVVLL   69 (143)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCCC-CcCccceeEec------------ccEEECChhheeCHHHHHHHHHHHhhCCEEEE
Confidence            799999999999999999997653 22222222221            2447999932    222333445568999999


Q ss_pred             EEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCe-EEEeeccCCCcHHHHHH
Q 028300           92 VYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSL-FLECSAKTRENVEQCFE  170 (211)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~Sa~~~~gv~~l~~  170 (211)
                      +.|++++.+...-..         ....+.|++=|+||+|+.. ...+.+.++++.+..|+. +|++|+.+|+|++++.+
T Consensus        70 l~dat~~~~~~pP~f---------a~~f~~pvIGVITK~Dl~~-~~~~i~~a~~~L~~aG~~~if~vS~~~~eGi~eL~~  139 (143)
T PF10662_consen   70 LQDATEPRSVFPPGF---------ASMFNKPVIGVITKIDLPS-DDANIERAKKWLKNAGVKEIFEVSAVTGEGIEELKD  139 (143)
T ss_pred             EecCCCCCccCCchh---------hcccCCCEEEEEECccCcc-chhhHHHHHHHHHHcCCCCeEEEECCCCcCHHHHHH
Confidence            999999754322221         1234789999999999963 234566677777777774 89999999999999998


Q ss_pred             HHH
Q 028300          171 QLA  173 (211)
Q Consensus       171 ~i~  173 (211)
                      +|-
T Consensus       140 ~L~  142 (143)
T PF10662_consen  140 YLE  142 (143)
T ss_pred             HHh
Confidence            864

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>PRK04004 translation initiation factor IF-2; Validated

Probab=99.79  E-value=5.3e-18  Score=140.24  Aligned_cols=156  Identities=24%  Similarity=0.211  Sum_probs=101.8

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCC-----ccceeeEEEEEEE--CCEE-----E-----EEEEEeCCChhh
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFISSSVDDLSP-----TIGVDFKIKLLTV--AGKR-----L-----KLTIWDTAGQER   74 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~-----~~~~~~~~~~~~~--~~~~-----~-----~~~l~D~~g~~~   74 (211)
                      .++..|+++|++++|||||+++|.+.......+     +.|.++.......  .+..     .     .+.||||||++.
T Consensus         4 ~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~   83 (586)
T PRK04004          4 LRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEA   83 (586)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHH
Confidence            456689999999999999999998665422111     2222221111000  0111     1     268999999999


Q ss_pred             hccchhhhccCCcEEEEEEECCC---hhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCccc----C--------
Q 028300           75 FRTLTSSYYRGAQGIILVYDVTR---RETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVV----S--------  139 (211)
Q Consensus        75 ~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v----~--------  139 (211)
                      |..++...+..+|++++|+|+++   +++++.+..     +.    ..++|+++++||+|+......    .        
T Consensus        84 f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~-----~~----~~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~  154 (586)
T PRK04004         84 FTNLRKRGGALADIAILVVDINEGFQPQTIEAINI-----LK----RRKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQ  154 (586)
T ss_pred             HHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHH-----HH----HcCCCEEEEEECcCCchhhhhhcCchHHHHHhhh
Confidence            99888888899999999999997   555554432     11    247899999999998522110    0        


Q ss_pred             HH-----------HHHHHHHH---------------cCCeEEEeeccCCCcHHHHHHHHHHHH
Q 028300          140 RE-----------EGIALAKE---------------HGSLFLECSAKTRENVEQCFEQLALKI  176 (211)
Q Consensus       140 ~~-----------~~~~~~~~---------------~~~~~~~~Sa~~~~gv~~l~~~i~~~~  176 (211)
                      ..           +...+...               ..++++++||.+|.|++++++.+...+
T Consensus       155 ~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~~  217 (586)
T PRK04004        155 SQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGLA  217 (586)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHHH
Confidence            00           00111111               135799999999999999998876533

>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily

Probab=99.79  E-value=1e-18  Score=128.70  Aligned_cols=147  Identities=18%  Similarity=0.125  Sum_probs=96.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCCC------------------------------CCCCCccceeeEEEEEEECCEEEEEE
Q 028300           16 KILLIGDSGVGKSSLLVSFISSSV------------------------------DDLSPTIGVDFKIKLLTVAGKRLKLT   65 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~   65 (211)
                      +|+++|++++|||||+.+|+...-                              .......|++.......+...+..+.
T Consensus         1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~   80 (219)
T cd01883           1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT   80 (219)
T ss_pred             CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence            589999999999999999963211                              01111335556655666666778899


Q ss_pred             EEeCCChhhhccchhhhccCCcEEEEEEECCChhh------HHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCC--cc
Q 028300           66 IWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRET------FTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSE--RV  137 (211)
Q Consensus        66 l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s------~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~--~~  137 (211)
                      +||+||+..+...+...+..+|++++|+|+++...      .......+ .....   ...+|+++++||+|+...  ..
T Consensus        81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~iiivvNK~Dl~~~~~~~  156 (219)
T cd01883          81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHA-LLART---LGVKQLIVAVNKMDDVTVNWSE  156 (219)
T ss_pred             EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHH-HHHHH---cCCCeEEEEEEccccccccccH
Confidence            99999998776666677788999999999998421      01111112 11221   224689999999998632  11


Q ss_pred             cCH----HHHHHHHHHc-----CCeEEEeeccCCCcHH
Q 028300          138 VSR----EEGIALAKEH-----GSLFLECSAKTRENVE  166 (211)
Q Consensus       138 v~~----~~~~~~~~~~-----~~~~~~~Sa~~~~gv~  166 (211)
                      ...    .+...+....     .++++++||++|.|++
T Consensus       157 ~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~  194 (219)
T cd01883         157 ERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI  194 (219)
T ss_pred             HHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence            111    1222223333     3679999999999986

EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in

>PRK12736 elongation factor Tu; Reviewed

Probab=99.79  E-value=6.3e-18  Score=134.52  Aligned_cols=160  Identities=15%  Similarity=0.081  Sum_probs=106.6

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHhhCCC---------------CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhh
Q 028300           11 YDLSFKILLIGDSGVGKSSLLVSFISSSV---------------DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERF   75 (211)
Q Consensus        11 ~~~~~~I~v~G~~~~GKssli~~l~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~   75 (211)
                      ....++|+++|++++|||||+++|++...               .......|.+.......+......+.|+|+||+.+|
T Consensus         9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f   88 (394)
T PRK12736          9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADY   88 (394)
T ss_pred             CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHH
Confidence            45679999999999999999999986311               011124456666666666666678899999999988


Q ss_pred             ccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCcc-EEEEeecCCCCCCcccC---HHHHHHHHHHcC
Q 028300           76 RTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCV-KMLVGNKVDRDSERVVS---REEGIALAKEHG  151 (211)
Q Consensus        76 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p-~viv~nK~Dl~~~~~v~---~~~~~~~~~~~~  151 (211)
                      .......+..+|++++|+|+++...-.. .. ....+.    ..++| +++++||+|+.+..+..   ..+...+....+
T Consensus        89 ~~~~~~~~~~~d~~llVvd~~~g~~~~t-~~-~~~~~~----~~g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~  162 (394)
T PRK12736         89 VKNMITGAAQMDGAILVVAATDGPMPQT-RE-HILLAR----QVGVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYD  162 (394)
T ss_pred             HHHHHHHHhhCCEEEEEEECCCCCchhH-HH-HHHHHH----HcCCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhC
Confidence            7666666788999999999986321111 11 222222    23677 67889999986432221   123444444443


Q ss_pred             -----CeEEEeeccCCC--------cHHHHHHHHHHHH
Q 028300          152 -----SLFLECSAKTRE--------NVEQCFEQLALKI  176 (211)
Q Consensus       152 -----~~~~~~Sa~~~~--------gv~~l~~~i~~~~  176 (211)
                           ++++++||+++.        ++.++++.+.+.+
T Consensus       163 ~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~l  200 (394)
T PRK12736        163 FPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYI  200 (394)
T ss_pred             CCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhC
Confidence                 589999999983        4666666666554

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=99.78  E-value=1.1e-18  Score=138.67  Aligned_cols=168  Identities=27%  Similarity=0.333  Sum_probs=124.6

Q ss_pred             CCCceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcE
Q 028300            9 NSYDLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQG   88 (211)
Q Consensus         9 ~~~~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~   88 (211)
                      ......+||+++|..|+||||||-.+...+|....|..-..+... ....-..+...++|++...+.+......++++|+
T Consensus         4 ~~t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IP-advtPe~vpt~ivD~ss~~~~~~~l~~EirkA~v   82 (625)
T KOG1707|consen    4 DETLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIP-ADVTPENVPTSIVDTSSDSDDRLCLRKEIRKADV   82 (625)
T ss_pred             ccCccceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccC-CccCcCcCceEEEecccccchhHHHHHHHhhcCE
Confidence            345678999999999999999999999999955544433322211 1222233457889998766655556788999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHhhhhcc-CCCccEEEEeecCCCCCCcccCHHH-HHHHHHHcC-C-eEEEeeccCCCc
Q 028300           89 IILVYDVTRRETFTNLSDVWAKEVDLYST-NQDCVKMLVGNKVDRDSERVVSREE-GIALAKEHG-S-LFLECSAKTREN  164 (211)
Q Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~~p~viv~nK~Dl~~~~~v~~~~-~~~~~~~~~-~-~~~~~Sa~~~~g  164 (211)
                      +.++|+++++.+++.+..+|+++++.... ..++|+|+|+||+|......-..+. ...+..++. + ..++|||++..+
T Consensus        83 i~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~EiEtciecSA~~~~n  162 (625)
T KOG1707|consen   83 ICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEIETCIECSALTLAN  162 (625)
T ss_pred             EEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHHHHHHHhhhhhhhhh
Confidence            99999999999999999999999987632 3689999999999986544332222 333333332 2 389999999999


Q ss_pred             HHHHHHHHHHHHH
Q 028300          165 VEQCFEQLALKIM  177 (211)
Q Consensus       165 v~~l~~~i~~~~~  177 (211)
                      +.++|....+++.
T Consensus       163 ~~e~fYyaqKaVi  175 (625)
T KOG1707|consen  163 VSELFYYAQKAVI  175 (625)
T ss_pred             hHhhhhhhhheee
Confidence            9999988776554

>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]

Probab=99.78  E-value=6.8e-18  Score=137.31  Aligned_cols=158  Identities=18%  Similarity=0.146  Sum_probs=117.2

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhc------cchhh-hc-c
Q 028300           13 LSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFR------TLTSS-YY-R   84 (211)
Q Consensus        13 ~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~------~~~~~-~~-~   84 (211)
                      +..+|+++|+||+|||||+|++.+... ....-+|.+.+.++..+...+..+++.|+||--...      ...+. .+ .
T Consensus         2 ~~~~valvGNPNvGKTtlFN~LTG~~q-~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~   80 (653)
T COG0370           2 KKLTVALVGNPNVGKTTLFNALTGANQ-KVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLLEG   80 (653)
T ss_pred             CcceEEEecCCCccHHHHHHHHhccCc-eecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCchHHHHHHHHhcC
Confidence            356799999999999999999997653 344567888888888887777789999999932221      22233 33 4


Q ss_pred             CCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCc
Q 028300           85 GAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTREN  164 (211)
Q Consensus        85 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~g  164 (211)
                      ++|+++-|+|+++.+.   ......+. .    ..+.|++++.|++|..+...+.. +.+.+.+.+|+|+++++|++|.|
T Consensus        81 ~~D~ivnVvDAtnLeR---nLyltlQL-l----E~g~p~ilaLNm~D~A~~~Gi~I-D~~~L~~~LGvPVv~tvA~~g~G  151 (653)
T COG0370          81 KPDLIVNVVDATNLER---NLYLTLQL-L----ELGIPMILALNMIDEAKKRGIRI-DIEKLSKLLGVPVVPTVAKRGEG  151 (653)
T ss_pred             CCCEEEEEcccchHHH---HHHHHHHH-H----HcCCCeEEEeccHhhHHhcCCcc-cHHHHHHHhCCCEEEEEeecCCC
Confidence            6699999999998643   22212222 2    24889999999999866554433 34566778999999999999999


Q ss_pred             HHHHHHHHHHHHHhcc
Q 028300          165 VEQCFEQLALKIMEVP  180 (211)
Q Consensus       165 v~~l~~~i~~~~~~~~  180 (211)
                      ++++...+.+...+..
T Consensus       152 ~~~l~~~i~~~~~~~~  167 (653)
T COG0370         152 LEELKRAIIELAESKT  167 (653)
T ss_pred             HHHHHHHHHHhccccc
Confidence            9999999887555544

>cd04167 Snu114p Snu114p subfamily

Probab=99.77  E-value=5.3e-18  Score=124.53  Aligned_cols=112  Identities=27%  Similarity=0.319  Sum_probs=79.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCCCCCC------------------CCccceeeEEEEEEE-----CCEEEEEEEEeCCCh
Q 028300           16 KILLIGDSGVGKSSLLVSFISSSVDDL------------------SPTIGVDFKIKLLTV-----AGKRLKLTIWDTAGQ   72 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~~~~~~------------------~~~~~~~~~~~~~~~-----~~~~~~~~l~D~~g~   72 (211)
                      +|+++|++|+|||||+++|+.......                  ....+.+.......+     ++..+.+.+||+||+
T Consensus         2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~   81 (213)
T cd04167           2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH   81 (213)
T ss_pred             cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence            689999999999999999987554211                  011222222222222     345688999999999


Q ss_pred             hhhccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCC
Q 028300           73 ERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRD  133 (211)
Q Consensus        73 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~  133 (211)
                      .++.......+..+|++++|+|+++..+.... . +.....    ..++|+++|+||+|+.
T Consensus        82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~~-~-~~~~~~----~~~~p~iiviNK~D~~  136 (213)
T cd04167          82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNTE-R-LIRHAI----LEGLPIVLVINKIDRL  136 (213)
T ss_pred             cchHHHHHHHHHhCCEEEEEEECCCCCCHHHH-H-HHHHHH----HcCCCEEEEEECcccC
Confidence            98877788889999999999999876554332 2 333322    2358999999999974

Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.

>TIGR00485 EF-Tu translation elongation factor TU

Probab=99.77  E-value=1.5e-17  Score=132.56  Aligned_cols=147  Identities=15%  Similarity=0.082  Sum_probs=98.7

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHhhCCC---------------CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhh
Q 028300           11 YDLSFKILLIGDSGVGKSSLLVSFISSSV---------------DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERF   75 (211)
Q Consensus        11 ~~~~~~I~v~G~~~~GKssli~~l~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~   75 (211)
                      ....++|+++|+.++|||||+++|++...               .......|.+.......+......+.|||+||+.+|
T Consensus         9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~f   88 (394)
T TIGR00485         9 TKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY   88 (394)
T ss_pred             CCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHHH
Confidence            35679999999999999999999974310               011123456666666666666778999999999988


Q ss_pred             ccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEE-EEeecCCCCCCcccC---HHHHHHHHHHcC
Q 028300           76 RTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKM-LVGNKVDRDSERVVS---REEGIALAKEHG  151 (211)
Q Consensus        76 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~v-iv~nK~Dl~~~~~v~---~~~~~~~~~~~~  151 (211)
                      .......+..+|++++|+|+.+.-.... .. ....+.    ..++|.+ +++||+|+.+.....   ..+...+....+
T Consensus        89 ~~~~~~~~~~~D~~ilVvda~~g~~~qt-~e-~l~~~~----~~gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~  162 (394)
T TIGR00485        89 VKNMITGAAQMDGAILVVSATDGPMPQT-RE-HILLAR----QVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYD  162 (394)
T ss_pred             HHHHHHHHhhCCEEEEEEECCCCCcHHH-HH-HHHHHH----HcCCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcC
Confidence            6656666788899999999987321111 11 222222    2366755 689999986533221   123445555544


Q ss_pred             -----CeEEEeeccCCC
Q 028300          152 -----SLFLECSAKTRE  163 (211)
Q Consensus       152 -----~~~~~~Sa~~~~  163 (211)
                           ++++++|+.++.
T Consensus       163 ~~~~~~~ii~vSa~~g~  179 (394)
T TIGR00485       163 FPGDDTPIIRGSALKAL  179 (394)
T ss_pred             CCccCccEEECcccccc
Confidence                 689999999874

This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>PRK12735 elongation factor Tu; Reviewed

Probab=99.76  E-value=3.6e-17  Score=130.27  Aligned_cols=160  Identities=13%  Similarity=0.071  Sum_probs=105.9

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHhhCC-------C--------CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhh
Q 028300           11 YDLSFKILLIGDSGVGKSSLLVSFISSS-------V--------DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERF   75 (211)
Q Consensus        11 ~~~~~~I~v~G~~~~GKssli~~l~~~~-------~--------~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~   75 (211)
                      ....++|+++|++++|||||+++|++..       +        .......|.+.......+.....++.|+|+||+.+|
T Consensus         9 ~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~f   88 (396)
T PRK12735          9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHADY   88 (396)
T ss_pred             CCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHHH
Confidence            4567999999999999999999998621       0        011123456666555566566678899999999888


Q ss_pred             ccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEE-EEeecCCCCCCcccC---HHHHHHHHHHcC
Q 028300           76 RTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKM-LVGNKVDRDSERVVS---REEGIALAKEHG  151 (211)
Q Consensus        76 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~v-iv~nK~Dl~~~~~v~---~~~~~~~~~~~~  151 (211)
                      .......+..+|++++|+|+.+.... .... +...+.    ..++|.+ +++||+|+.+..+..   ..+...+....+
T Consensus        89 ~~~~~~~~~~aD~~llVvda~~g~~~-qt~e-~l~~~~----~~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~  162 (396)
T PRK12735         89 VKNMITGAAQMDGAILVVSAADGPMP-QTRE-HILLAR----QVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYD  162 (396)
T ss_pred             HHHHHhhhccCCEEEEEEECCCCCch-hHHH-HHHHHH----HcCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHcC
Confidence            66666778899999999999874211 1112 222222    3467865 579999986432211   123444444432


Q ss_pred             -----CeEEEeeccCCC----------cHHHHHHHHHHHH
Q 028300          152 -----SLFLECSAKTRE----------NVEQCFEQLALKI  176 (211)
Q Consensus       152 -----~~~~~~Sa~~~~----------gv~~l~~~i~~~~  176 (211)
                           ++++++|+.++.          ++.++++.|...+
T Consensus       163 ~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~  202 (396)
T PRK12735        163 FPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYI  202 (396)
T ss_pred             CCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcC
Confidence                 679999999984          5666666665543

>cd04165 GTPBP1_like GTPBP1-like

Probab=99.76  E-value=2.6e-17  Score=121.18  Aligned_cols=152  Identities=18%  Similarity=0.166  Sum_probs=94.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCCCCCCCC------------------------ccceeeEEEE-------------EEEC
Q 028300           16 KILLIGDSGVGKSSLLVSFISSSVDDLSP------------------------TIGVDFKIKL-------------LTVA   58 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~~~~~~~~------------------------~~~~~~~~~~-------------~~~~   58 (211)
                      ||+++|+.++|||||+++|..+.++....                        ..+.+.....             -.+.
T Consensus         1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~   80 (224)
T cd04165           1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE   80 (224)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence            68999999999999999999765532110                        0011110000             0111


Q ss_pred             CEEEEEEEEeCCChhhhccchhhhcc--CCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCc
Q 028300           59 GKRLKLTIWDTAGQERFRTLTSSYYR--GAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSER  136 (211)
Q Consensus        59 ~~~~~~~l~D~~g~~~~~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~  136 (211)
                      ..+..+.++|+||+..|.......+.  .+|++++|+|+.....-.. .. +...+.    ..++|+++|+||+|+.+..
T Consensus        81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d-~~-~l~~l~----~~~ip~ivvvNK~D~~~~~  154 (224)
T cd04165          81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMT-KE-HLGLAL----ALNIPVFVVVTKIDLAPAN  154 (224)
T ss_pred             eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHHH-HH-HHHHHH----HcCCCEEEEEECccccCHH
Confidence            23457899999999888654444443  6899999999886532111 11 333333    3478999999999985433


Q ss_pred             ccCH--HHHHHHHH--------------------------HcCCeEEEeeccCCCcHHHHHHHHH
Q 028300          137 VVSR--EEGIALAK--------------------------EHGSLFLECSAKTRENVEQCFEQLA  173 (211)
Q Consensus       137 ~v~~--~~~~~~~~--------------------------~~~~~~~~~Sa~~~~gv~~l~~~i~  173 (211)
                      ....  .+...+..                          ...+|+|.+|+.+|.|++++...|.
T Consensus       155 ~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~  219 (224)
T cd04165         155 ILQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLN  219 (224)
T ss_pred             HHHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHH
Confidence            2211  11222211                          0124899999999999999887654

Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and

>CHL00071 tufA elongation factor Tu

Probab=99.75  E-value=4.9e-17  Score=130.02  Aligned_cols=148  Identities=14%  Similarity=0.058  Sum_probs=100.0

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHhhCCC---------------CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhh
Q 028300           11 YDLSFKILLIGDSGVGKSSLLVSFISSSV---------------DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERF   75 (211)
Q Consensus        11 ~~~~~~I~v~G~~~~GKssli~~l~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~   75 (211)
                      ....++|+++|++++|||||+++|++...               .......|.+.......+.....++.|+|+||+.+|
T Consensus         9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~~   88 (409)
T CHL00071          9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY   88 (409)
T ss_pred             CCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHHH
Confidence            45679999999999999999999986421               111122456666555556556678899999999888


Q ss_pred             ccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCcc-EEEEeecCCCCCCcccC---HHHHHHHHHHcC
Q 028300           76 RTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCV-KMLVGNKVDRDSERVVS---REEGIALAKEHG  151 (211)
Q Consensus        76 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p-~viv~nK~Dl~~~~~v~---~~~~~~~~~~~~  151 (211)
                      .......+..+|++++|+|+.+.-.- .... ....+.    ..++| +++++||+|+.+..+..   ..+...+....+
T Consensus        89 ~~~~~~~~~~~D~~ilVvda~~g~~~-qt~~-~~~~~~----~~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~  162 (409)
T CHL00071         89 VKNMITGAAQMDGAILVVSAADGPMP-QTKE-HILLAK----QVGVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYD  162 (409)
T ss_pred             HHHHHHHHHhCCEEEEEEECCCCCcH-HHHH-HHHHHH----HcCCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhC
Confidence            66667778899999999999864221 1111 222222    33678 67899999986533221   123444444433


Q ss_pred             -----CeEEEeeccCCCc
Q 028300          152 -----SLFLECSAKTREN  164 (211)
Q Consensus       152 -----~~~~~~Sa~~~~g  164 (211)
                           ++++.+|+.++.+
T Consensus       163 ~~~~~~~ii~~Sa~~g~n  180 (409)
T CHL00071        163 FPGDDIPIVSGSALLALE  180 (409)
T ss_pred             CCCCcceEEEcchhhccc
Confidence                 6899999999864

>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=99.75  E-value=3.7e-17  Score=121.60  Aligned_cols=155  Identities=22%  Similarity=0.267  Sum_probs=104.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEE-EEEEEEeCCChhhh----ccchh---hhccCCc
Q 028300           16 KILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKR-LKLTIWDTAGQERF----RTLTS---SYYRGAQ   87 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~D~~g~~~~----~~~~~---~~~~~~d   87 (211)
                      .|.++|.|++|||||++.+.+... ...+...++..+...+...++ .++.+-|+||.-+-    ..+-.   .-++.++
T Consensus       198 dvGLVG~PNAGKSTLL~als~AKp-kVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLrHiER~~  276 (366)
T KOG1489|consen  198 DVGLVGFPNAGKSTLLNALSRAKP-KVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGLGYKFLRHIERCK  276 (366)
T ss_pred             ccceecCCCCcHHHHHHHhhccCC-cccccceeeeccccceeeccccceeEeccCccccccccccCcccHHHHHHHHhhc
Confidence            578999999999999999998775 222222222222222222233 33899999994322    22222   3356789


Q ss_pred             EEEEEEECCCh---hhHHHHHHHHHHHhhhhc-cCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCe-EEEeeccCC
Q 028300           88 GIILVYDVTRR---ETFTNLSDVWAKEVDLYS-TNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSL-FLECSAKTR  162 (211)
Q Consensus        88 ~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~-~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~Sa~~~  162 (211)
                      .++||+|++..   +.++.+.. +..++..+. .....|.+||+||+|+.+.   ......++++...-+ ++++||+++
T Consensus       277 ~l~fVvD~s~~~~~~p~~~~~l-L~~ELe~yek~L~~rp~liVaNKiD~~ea---e~~~l~~L~~~lq~~~V~pvsA~~~  352 (366)
T KOG1489|consen  277 GLLFVVDLSGKQLRNPWQQLQL-LIEELELYEKGLADRPALIVANKIDLPEA---EKNLLSSLAKRLQNPHVVPVSAKSG  352 (366)
T ss_pred             eEEEEEECCCcccCCHHHHHHH-HHHHHHHHhhhhccCceEEEEeccCchhH---HHHHHHHHHHHcCCCcEEEeeeccc
Confidence            99999999998   77777777 555555442 3567899999999998532   112234555555444 999999999


Q ss_pred             CcHHHHHHHHHHH
Q 028300          163 ENVEQCFEQLALK  175 (211)
Q Consensus       163 ~gv~~l~~~i~~~  175 (211)
                      +|+.++++.|.+.
T Consensus       353 egl~~ll~~lr~~  365 (366)
T KOG1489|consen  353 EGLEELLNGLREL  365 (366)
T ss_pred             cchHHHHHHHhhc
Confidence            9999998887653

>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1

Probab=99.75  E-value=2.9e-17  Score=120.46  Aligned_cols=170  Identities=19%  Similarity=0.223  Sum_probs=108.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEE-CCEEEEEEEEeCCChhhhc-----cchhhhccCCcEE
Q 028300           16 KILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTV-AGKRLKLTIWDTAGQERFR-----TLTSSYYRGAQGI   89 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~g~~~~~-----~~~~~~~~~~d~~   89 (211)
                      ||+++|+.+|||||+.+.+..+..+......+.+.......+ ......+.+||+||+..+.     ......+++++++
T Consensus         1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~L   80 (232)
T PF04670_consen    1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGVL   80 (232)
T ss_dssp             EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESEE
T ss_pred             CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhccCEE
Confidence            799999999999999999997765544444444333333333 2334589999999986442     3457788999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHhhh-hccCCCccEEEEeecCCCCCCcccC------HHHHHHHHHHcC---CeEEEeec
Q 028300           90 ILVYDVTRRETFTNLSDVWAKEVDL-YSTNQDCVKMLVGNKVDRDSERVVS------REEGIALAKEHG---SLFLECSA  159 (211)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~~p~viv~nK~Dl~~~~~v~------~~~~~~~~~~~~---~~~~~~Sa  159 (211)
                      |||+|+.+.+..+.+.. +...+.. +...+++.+.+.+.|+|+..++...      .+.+...+...+   +.++.||.
T Consensus        81 IyV~D~qs~~~~~~l~~-~~~~i~~l~~~sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~TSI  159 (232)
T PF04670_consen   81 IYVFDAQSDDYDEDLAY-LSDCIEALRQYSPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFLTSI  159 (232)
T ss_dssp             EEEEETT-STCHHHHHH-HHHHHHHHHHHSTT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE-T
T ss_pred             EEEEEcccccHHHHHHH-HHHHHHHHHHhCCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEeccC
Confidence            99999996554444443 4444332 2237899999999999986432211      122233333444   67889998


Q ss_pred             cCCCcHHHHHHHHHHHHHhccchhcccc
Q 028300          160 KTRENVEQCFEQLALKIMEVPSLLEEGS  187 (211)
Q Consensus       160 ~~~~gv~~l~~~i~~~~~~~~~~~~~~~  187 (211)
                      .+ ..+-+.|..|++.+..+....++..
T Consensus       160 ~D-~Sly~A~S~Ivq~LiP~~~~le~~L  186 (232)
T PF04670_consen  160 WD-ESLYEAWSKIVQKLIPNLSTLENLL  186 (232)
T ss_dssp             TS-THHHHHHHHHHHTTSTTHCCCCCCC
T ss_pred             cC-cHHHHHHHHHHHHHcccHHHHHHHH
Confidence            88 5899999999999988877766653

RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=99.74  E-value=5.9e-17  Score=117.53  Aligned_cols=159  Identities=21%  Similarity=0.227  Sum_probs=97.0

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhhCCCC-CCCCccc---eeeEEEEEEECCEEEEEEEEeCCChhhhcc-----chhhhcc
Q 028300           14 SFKILLIGDSGVGKSSLLVSFISSSVD-DLSPTIG---VDFKIKLLTVAGKRLKLTIWDTAGQERFRT-----LTSSYYR   84 (211)
Q Consensus        14 ~~~I~v~G~~~~GKssli~~l~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~-----~~~~~~~   84 (211)
                      +++|+++|.+|+|||||+|.|.+..+. ......+   ++.....+... ....+.+||+||......     +....+.
T Consensus         1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~   79 (197)
T cd04104           1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHP-KFPNVTLWDLPGIGSTAFPPDDYLEEMKFS   79 (197)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecC-CCCCceEEeCCCCCcccCCHHHHHHHhCcc
Confidence            479999999999999999999986542 1222222   11111111111 123689999999643221     2223367


Q ss_pred             CCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCccc-------CHHH----HHHHH----HH
Q 028300           85 GAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVV-------SREE----GIALA----KE  149 (211)
Q Consensus        85 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v-------~~~~----~~~~~----~~  149 (211)
                      ++|+++++.+.    .+......|...+...    +.|+++|+||+|+......       ..++    .++..    ..
T Consensus        80 ~~d~~l~v~~~----~~~~~d~~~~~~l~~~----~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~  151 (197)
T cd04104          80 EYDFFIIISST----RFSSNDVKLAKAIQCM----GKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQE  151 (197)
T ss_pred             CcCEEEEEeCC----CCCHHHHHHHHHHHHh----CCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHH
Confidence            78998888542    2333433366666543    6899999999998432110       0111    11111    12


Q ss_pred             cC---CeEEEeecc--CCCcHHHHHHHHHHHHHhccc
Q 028300          150 HG---SLFLECSAK--TRENVEQCFEQLALKIMEVPS  181 (211)
Q Consensus       150 ~~---~~~~~~Sa~--~~~gv~~l~~~i~~~~~~~~~  181 (211)
                      .+   -++|.+|+.  .+.++..+.+.|+..+.+.++
T Consensus       152 ~~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~~~  188 (197)
T cd04104         152 AGVSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAHKR  188 (197)
T ss_pred             cCCCCCCEEEEeCCChhhcChHHHHHHHHHHhhHHHH
Confidence            12   258999998  578999999999998887654

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>COG2262 HflX GTPases [General function prediction only]

Probab=99.74  E-value=2e-16  Score=121.94  Aligned_cols=161  Identities=19%  Similarity=0.140  Sum_probs=111.0

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChh---------hhccchh
Q 028300           11 YDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQE---------RFRTLTS   80 (211)
Q Consensus        11 ~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~---------~~~~~~~   80 (211)
                      ...-..|+++|-.|+|||||+|.|.+... ........-+-+.+.+.+.+ +..+.+-||.|.-         .|.+. -
T Consensus       189 ~~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~-g~~vlLtDTVGFI~~LP~~LV~AFksT-L  266 (411)
T COG2262         189 RSGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGD-GRKVLLTDTVGFIRDLPHPLVEAFKST-L  266 (411)
T ss_pred             ccCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCC-CceEEEecCccCcccCChHHHHHHHHH-H
Confidence            34567899999999999999999997664 23222222333334444543 4567888999932         23332 2


Q ss_pred             hhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeecc
Q 028300           81 SYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAK  160 (211)
Q Consensus        81 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~  160 (211)
                      .....+|.+++|+|++++...+.+.. ....+... ....+|+++|+||+|+..... ...   ....... ..+.+||+
T Consensus       267 EE~~~aDlllhVVDaSdp~~~~~~~~-v~~vL~el-~~~~~p~i~v~NKiD~~~~~~-~~~---~~~~~~~-~~v~iSA~  339 (411)
T COG2262         267 EEVKEADLLLHVVDASDPEILEKLEA-VEDVLAEI-GADEIPIILVLNKIDLLEDEE-ILA---ELERGSP-NPVFISAK  339 (411)
T ss_pred             HHhhcCCEEEEEeecCChhHHHHHHH-HHHHHHHc-CCCCCCEEEEEecccccCchh-hhh---hhhhcCC-CeEEEEec
Confidence            34578999999999999977777666 55566554 345699999999999754433 111   1111112 58999999


Q ss_pred             CCCcHHHHHHHHHHHHHhcc
Q 028300          161 TRENVEQCFEQLALKIMEVP  180 (211)
Q Consensus       161 ~~~gv~~l~~~i~~~~~~~~  180 (211)
                      ++.|++.+++.|.+.+....
T Consensus       340 ~~~gl~~L~~~i~~~l~~~~  359 (411)
T COG2262         340 TGEGLDLLRERIIELLSGLR  359 (411)
T ss_pred             cCcCHHHHHHHHHHHhhhcc
Confidence            99999999999999887554

>PLN03126 Elongation factor Tu; Provisional

Probab=99.72  E-value=2.7e-16  Score=127.10  Aligned_cols=147  Identities=14%  Similarity=0.056  Sum_probs=99.3

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHhhCCC---------------CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhh
Q 028300           11 YDLSFKILLIGDSGVGKSSLLVSFISSSV---------------DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERF   75 (211)
Q Consensus        11 ~~~~~~I~v~G~~~~GKssli~~l~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~   75 (211)
                      ....++|+++|++++|||||+++|+....               .......+.+.......++..+..+.|+|+||+.+|
T Consensus        78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~f  157 (478)
T PLN03126         78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADY  157 (478)
T ss_pred             cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHHH
Confidence            45678999999999999999999985211               111223455555555555556678899999999998


Q ss_pred             ccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCcc-EEEEeecCCCCCCcccC---HHHHHHHHHHc-
Q 028300           76 RTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCV-KMLVGNKVDRDSERVVS---REEGIALAKEH-  150 (211)
Q Consensus        76 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p-~viv~nK~Dl~~~~~v~---~~~~~~~~~~~-  150 (211)
                      .......+..+|++++|+|+.+...-.. .. +...+.    ..++| +++++||+|+.+..+..   ..+...+.... 
T Consensus       158 ~~~~~~g~~~aD~ailVVda~~G~~~qt-~e-~~~~~~----~~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g  231 (478)
T PLN03126        158 VKNMITGAAQMDGAILVVSGADGPMPQT-KE-HILLAK----QVGVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYE  231 (478)
T ss_pred             HHHHHHHHhhCCEEEEEEECCCCCcHHH-HH-HHHHHH----HcCCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcC
Confidence            7666777889999999999887532211 22 222333    23777 77899999986532221   12334444443 


Q ss_pred             ----CCeEEEeeccCCC
Q 028300          151 ----GSLFLECSAKTRE  163 (211)
Q Consensus       151 ----~~~~~~~Sa~~~~  163 (211)
                          .++++.+|+.++.
T Consensus       232 ~~~~~~~~vp~Sa~~g~  248 (478)
T PLN03126        232 FPGDDIPIISGSALLAL  248 (478)
T ss_pred             CCcCcceEEEEEccccc
Confidence                4689999998874

>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.72  E-value=2.6e-17  Score=111.10  Aligned_cols=157  Identities=18%  Similarity=0.198  Sum_probs=120.5

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEE
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIIL   91 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   91 (211)
                      .+.-|++++|..|+|||||++.|.........||...+.....    -...+++.+|++|+..-+..|..++..+|++++
T Consensus        18 kK~gKllFlGLDNAGKTTLLHMLKdDrl~qhvPTlHPTSE~l~----Ig~m~ftt~DLGGH~qArr~wkdyf~~v~~iv~   93 (193)
T KOG0077|consen   18 KKFGKLLFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELS----IGGMTFTTFDLGGHLQARRVWKDYFPQVDAIVY   93 (193)
T ss_pred             ccCceEEEEeecCCchhhHHHHHccccccccCCCcCCChHHhe----ecCceEEEEccccHHHHHHHHHHHHhhhceeEe
Confidence            4566899999999999999999998888888888877766333    366788999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHH---HHc-----------C---CeE
Q 028300           92 VYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALA---KEH-----------G---SLF  154 (211)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~---~~~-----------~---~~~  154 (211)
                      .+|+-+.+.+.+.+..+...+.. ......|++|.+||+|.+.+.  ..++.+...   ...           +   ..+
T Consensus        94 lvda~d~er~~es~~eld~ll~~-e~la~vp~lilgnKId~p~a~--se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~ev  170 (193)
T KOG0077|consen   94 LVDAYDQERFAESKKELDALLSD-ESLATVPFLILGNKIDIPYAA--SEDELRFHLGLSNFTTGKGKVNLTDSNVRPLEV  170 (193)
T ss_pred             eeehhhHHHhHHHHHHHHHHHhH-HHHhcCcceeecccccCCCcc--cHHHHHHHHHHHHHhcccccccccCCCCCeEEE
Confidence            99999999988887744444432 245789999999999986553  333322111   111           1   236


Q ss_pred             EEeeccCCCcHHHHHHHHHHH
Q 028300          155 LECSAKTRENVEQCFEQLALK  175 (211)
Q Consensus       155 ~~~Sa~~~~gv~~l~~~i~~~  175 (211)
                      +.||...+.|-.+.|.|+.+.
T Consensus       171 fmcsi~~~~gy~e~fkwl~qy  191 (193)
T KOG0077|consen  171 FMCSIVRKMGYGEGFKWLSQY  191 (193)
T ss_pred             EEEEEEccCccceeeeehhhh
Confidence            888998888877778777654

>cd04169 RF3 RF3 subfamily

Probab=99.72  E-value=1.6e-16  Score=119.92  Aligned_cols=115  Identities=15%  Similarity=0.192  Sum_probs=81.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhhCCC--CCC---------C----------CccceeeEEEEEEECCEEEEEEEEeCCChh
Q 028300           15 FKILLIGDSGVGKSSLLVSFISSSV--DDL---------S----------PTIGVDFKIKLLTVAGKRLKLTIWDTAGQE   73 (211)
Q Consensus        15 ~~I~v~G~~~~GKssli~~l~~~~~--~~~---------~----------~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~   73 (211)
                      -+|+++|++|+|||||+++|+...-  ...         .          ...+.+.......+...+..+.+|||||+.
T Consensus         3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~   82 (267)
T cd04169           3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE   82 (267)
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence            4799999999999999999985321  100         0          012334444455666677899999999999


Q ss_pred             hhccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCC
Q 028300           74 RFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSE  135 (211)
Q Consensus        74 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~  135 (211)
                      +|.......++.+|++++|+|+++..... ... +.....    ..++|+++++||+|+...
T Consensus        83 df~~~~~~~l~~aD~~IlVvda~~g~~~~-~~~-i~~~~~----~~~~P~iivvNK~D~~~a  138 (267)
T cd04169          83 DFSEDTYRTLTAVDSAVMVIDAAKGVEPQ-TRK-LFEVCR----LRGIPIITFINKLDREGR  138 (267)
T ss_pred             HHHHHHHHHHHHCCEEEEEEECCCCccHH-HHH-HHHHHH----hcCCCEEEEEECCccCCC
Confidence            88776777889999999999998753211 122 223322    347899999999998654

Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.

>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional

Probab=99.72  E-value=1.3e-16  Score=129.39  Aligned_cols=153  Identities=18%  Similarity=0.124  Sum_probs=97.8

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHhhCCCCCC--------------C------------------CccceeeEEEEEEEC
Q 028300           11 YDLSFKILLIGDSGVGKSSLLVSFISSSVDDL--------------S------------------PTIGVDFKIKLLTVA   58 (211)
Q Consensus        11 ~~~~~~I~v~G~~~~GKssli~~l~~~~~~~~--------------~------------------~~~~~~~~~~~~~~~   58 (211)
                      ....++|+++|++++|||||+++|+...-...              .                  ...|.+.......+.
T Consensus        24 ~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~  103 (474)
T PRK05124         24 HKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFS  103 (474)
T ss_pred             ccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEec
Confidence            35679999999999999999999985432100              0                  012334444444455


Q ss_pred             CEEEEEEEEeCCChhhhccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCccc
Q 028300           59 GKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVV  138 (211)
Q Consensus        59 ~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v  138 (211)
                      ....++.||||||+..|.......+..+|++++|+|+.+.-.-..... + ..+...   ...|+++++||+|+.+.+..
T Consensus       104 ~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~-~-~l~~~l---g~~~iIvvvNKiD~~~~~~~  178 (474)
T PRK05124        104 TEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRH-S-FIATLL---GIKHLVVAVNKMDLVDYSEE  178 (474)
T ss_pred             cCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHH-H-HHHHHh---CCCceEEEEEeeccccchhH
Confidence            566789999999998886555556799999999999986421111111 1 111111   12478999999998643221


Q ss_pred             CHHHH----HHHHHHc----CCeEEEeeccCCCcHHHH
Q 028300          139 SREEG----IALAKEH----GSLFLECSAKTRENVEQC  168 (211)
Q Consensus       139 ~~~~~----~~~~~~~----~~~~~~~Sa~~~~gv~~l  168 (211)
                      ...+.    ..+....    .++++++||+++.|+.++
T Consensus       179 ~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~  216 (474)
T PRK05124        179 VFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ  216 (474)
T ss_pred             HHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence            11222    2222232    367999999999999765

>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.72  E-value=3.4e-16  Score=124.20  Aligned_cols=155  Identities=21%  Similarity=0.244  Sum_probs=112.1

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECC---EEEEEEEEeCCChhhhccchhhhccCCcE
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAG---KRLKLTIWDTAGQERFRTLTSSYYRGAQG   88 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~D~~g~~~~~~~~~~~~~~~d~   88 (211)
                      .++.-|+++|+..-|||||+.++....... ...-|.+.+.--+.+..   ....+.|+|||||+.|..+......-+|+
T Consensus         3 ~R~PvVtimGHVDHGKTtLLD~IR~t~Va~-~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDI   81 (509)
T COG0532           3 LRPPVVTIMGHVDHGKTTLLDKIRKTNVAA-GEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDI   81 (509)
T ss_pred             CCCCEEEEeCcccCCccchhhhHhcCcccc-ccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccE
Confidence            356679999999999999999998766522 22334444444444432   23578999999999999999999899999


Q ss_pred             EEEEEECCC---hhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcC---------CeEEE
Q 028300           89 IILVYDVTR---RETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHG---------SLFLE  156 (211)
Q Consensus        89 ~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~---------~~~~~  156 (211)
                      ++||++++|   +++.+.+..         ....+.|+++++||+|..+.   +..........++         ..+++
T Consensus        82 aILVVa~dDGv~pQTiEAI~h---------ak~a~vP~iVAiNKiDk~~~---np~~v~~el~~~gl~~E~~gg~v~~Vp  149 (509)
T COG0532          82 AILVVAADDGVMPQTIEAINH---------AKAAGVPIVVAINKIDKPEA---NPDKVKQELQEYGLVPEEWGGDVIFVP  149 (509)
T ss_pred             EEEEEEccCCcchhHHHHHHH---------HHHCCCCEEEEEecccCCCC---CHHHHHHHHHHcCCCHhhcCCceEEEE
Confidence            999999998   444444332         24569999999999998743   3333333333333         35899


Q ss_pred             eeccCCCcHHHHHHHHHHHHHhc
Q 028300          157 CSAKTRENVEQCFEQLALKIMEV  179 (211)
Q Consensus       157 ~Sa~~~~gv~~l~~~i~~~~~~~  179 (211)
                      +||++|.|+++|+..++-...-.
T Consensus       150 vSA~tg~Gi~eLL~~ill~aev~  172 (509)
T COG0532         150 VSAKTGEGIDELLELILLLAEVL  172 (509)
T ss_pred             eeccCCCCHHHHHHHHHHHHHHH
Confidence            99999999999998877644433

>COG1084 Predicted GTPase [General function prediction only]

Probab=99.71  E-value=3.5e-16  Score=117.20  Aligned_cols=160  Identities=19%  Similarity=0.168  Sum_probs=107.4

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhh-----hc----cchhhh
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER-----FR----TLTSSY   82 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-----~~----~~~~~~   82 (211)
                      .....|+|.|.||||||||++.+...+. +..+-+.++.......++.....++++||||.-+     -+    ....+.
T Consensus       166 p~~pTivVaG~PNVGKSSlv~~lT~Akp-EvA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL  244 (346)
T COG1084         166 PDLPTIVVAGYPNVGKSSLVRKLTTAKP-EVAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEIERQAILAL  244 (346)
T ss_pred             CCCCeEEEecCCCCcHHHHHHHHhcCCC-ccCCCCccccceeEeeeecCCceEEEecCCcccCCChHHhcHHHHHHHHHH
Confidence            3677899999999999999999997764 3344455555555556666778899999999321     11    111222


Q ss_pred             ccCCcEEEEEEECCCh--hhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCC-eEEEeec
Q 028300           83 YRGAQGIILVYDVTRR--ETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGS-LFLECSA  159 (211)
Q Consensus        83 ~~~~d~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~Sa  159 (211)
                      -.-.++++|+||.+.-  -+++.... +...++..   .+.|+++|+||+|..+.+.+...  .......+. ....+++
T Consensus       245 ~hl~~~IlF~~D~Se~cgy~lE~Q~~-L~~eIk~~---f~~p~v~V~nK~D~~~~e~~~~~--~~~~~~~~~~~~~~~~~  318 (346)
T COG1084         245 RHLAGVILFLFDPSETCGYSLEEQIS-LLEEIKEL---FKAPIVVVINKIDIADEEKLEEI--EASVLEEGGEEPLKISA  318 (346)
T ss_pred             HHhcCeEEEEEcCccccCCCHHHHHH-HHHHHHHh---cCCCeEEEEecccccchhHHHHH--HHHHHhhccccccceee
Confidence            2335889999999864  35666666 34444332   34899999999998755544333  333333343 3778888


Q ss_pred             cCCCcHHHHHHHHHHHHHh
Q 028300          160 KTRENVEQCFEQLALKIME  178 (211)
Q Consensus       160 ~~~~gv~~l~~~i~~~~~~  178 (211)
                      ..+.+++.+-..+.....+
T Consensus       319 ~~~~~~d~~~~~v~~~a~~  337 (346)
T COG1084         319 TKGCGLDKLREEVRKTALE  337 (346)
T ss_pred             eehhhHHHHHHHHHHHhhc
Confidence            8898888777776665443

>PRK00049 elongation factor Tu; Reviewed

Probab=99.71  E-value=5.3e-16  Score=123.55  Aligned_cols=147  Identities=13%  Similarity=0.072  Sum_probs=98.0

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHhhCCCC---------------CCCCccceeeEEEEEEECCEEEEEEEEeCCChhhh
Q 028300           11 YDLSFKILLIGDSGVGKSSLLVSFISSSVD---------------DLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERF   75 (211)
Q Consensus        11 ~~~~~~I~v~G~~~~GKssli~~l~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~   75 (211)
                      ....++|+++|++++|||||+++|++....               ......|.+.......+.....++.|+||||+.+|
T Consensus         9 ~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~f   88 (396)
T PRK00049          9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADY   88 (396)
T ss_pred             CCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHHH
Confidence            356799999999999999999999863110               11114456666555566556678899999999888


Q ss_pred             ccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEE-EEeecCCCCCCcccC---HHHHHHHHHHc-
Q 028300           76 RTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKM-LVGNKVDRDSERVVS---REEGIALAKEH-  150 (211)
Q Consensus        76 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~v-iv~nK~Dl~~~~~v~---~~~~~~~~~~~-  150 (211)
                      .......+..+|++++|+|+.+...- .... +...+.    ..++|.+ +++||+|+.+.....   ..+...+.... 
T Consensus        89 ~~~~~~~~~~aD~~llVVDa~~g~~~-qt~~-~~~~~~----~~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~  162 (396)
T PRK00049         89 VKNMITGAAQMDGAILVVSAADGPMP-QTRE-HILLAR----QVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYD  162 (396)
T ss_pred             HHHHHhhhccCCEEEEEEECCCCCch-HHHH-HHHHHH----HcCCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcC
Confidence            66666778899999999999874221 1112 223333    2367876 589999986422211   12233333332 


Q ss_pred             ----CCeEEEeeccCCC
Q 028300          151 ----GSLFLECSAKTRE  163 (211)
Q Consensus       151 ----~~~~~~~Sa~~~~  163 (211)
                          .++++.+||.++.
T Consensus       163 ~~~~~~~iv~iSa~~g~  179 (396)
T PRK00049        163 FPGDDTPIIRGSALKAL  179 (396)
T ss_pred             CCccCCcEEEeeccccc
Confidence                3689999999875

>PLN00043 elongation factor 1-alpha; Provisional

Probab=99.71  E-value=3.6e-16  Score=125.87  Aligned_cols=150  Identities=20%  Similarity=0.214  Sum_probs=103.1

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhhCCC--C----------------------------CCCCccceeeEEEEEEECCEE
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFISSSV--D----------------------------DLSPTIGVDFKIKLLTVAGKR   61 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~~~~~--~----------------------------~~~~~~~~~~~~~~~~~~~~~   61 (211)
                      ...++|+++|+.++|||||+.+|+...-  .                            ......|.+.......+....
T Consensus         5 k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~~   84 (447)
T PLN00043          5 KVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTK   84 (447)
T ss_pred             CceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCCC
Confidence            4578999999999999999999874211  0                            011123455555555667777


Q ss_pred             EEEEEEeCCChhhhccchhhhccCCcEEEEEEECCChhhHH-------HHHHHHHHHhhhhccCCCc-cEEEEeecCCCC
Q 028300           62 LKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFT-------NLSDVWAKEVDLYSTNQDC-VKMLVGNKVDRD  133 (211)
Q Consensus        62 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~-------~~~~~~~~~~~~~~~~~~~-p~viv~nK~Dl~  133 (211)
                      ..+.++|+||+.+|.......+..+|++|+|+|+++. .++       .... .....    ...++ ++++++||+|+.
T Consensus        85 ~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~e-h~~~~----~~~gi~~iIV~vNKmD~~  158 (447)
T PLN00043         85 YYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQTRE-HALLA----FTLGVKQMICCCNKMDAT  158 (447)
T ss_pred             EEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchHHH-HHHHH----HHcCCCcEEEEEEcccCC
Confidence            8999999999999988888889999999999999873 221       2222 11112    23466 468889999975


Q ss_pred             CCc--cc----CHHHHHHHHHHcC-----CeEEEeeccCCCcHHH
Q 028300          134 SER--VV----SREEGIALAKEHG-----SLFLECSAKTRENVEQ  167 (211)
Q Consensus       134 ~~~--~v----~~~~~~~~~~~~~-----~~~~~~Sa~~~~gv~~  167 (211)
                      +..  ..    ..+++..++...+     ++|+++||++|+|+.+
T Consensus       159 ~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~  203 (447)
T PLN00043        159 TPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE  203 (447)
T ss_pred             chhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence            211  10    1234555555554     6799999999999853

>TIGR02034 CysN sulfate adenylyltransferase, large subunit

Probab=99.71  E-value=1e-16  Score=128.04  Aligned_cols=148  Identities=19%  Similarity=0.193  Sum_probs=95.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhhCCC--CC------------------------------CCCccceeeEEEEEEECCEEE
Q 028300           15 FKILLIGDSGVGKSSLLVSFISSSV--DD------------------------------LSPTIGVDFKIKLLTVAGKRL   62 (211)
Q Consensus        15 ~~I~v~G~~~~GKssli~~l~~~~~--~~------------------------------~~~~~~~~~~~~~~~~~~~~~   62 (211)
                      +||+++|++++|||||+.+|+...-  ..                              .....+.+.......+...+.
T Consensus         1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~   80 (406)
T TIGR02034         1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR   80 (406)
T ss_pred             CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence            5899999999999999999974321  00                              001123344444445555667


Q ss_pred             EEEEEeCCChhhhccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCH--
Q 028300           63 KLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSR--  140 (211)
Q Consensus        63 ~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~--  140 (211)
                      ++.|+|+||+.+|.......+..+|++++|+|+.+...-....  ....+...   ...++++++||+|+.+......  
T Consensus        81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~--~~~~~~~~---~~~~iivviNK~D~~~~~~~~~~~  155 (406)
T TIGR02034        81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRR--HSYIASLL---GIRHVVLAVNKMDLVDYDEEVFEN  155 (406)
T ss_pred             EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHH--HHHHHHHc---CCCcEEEEEEecccccchHHHHHH
Confidence            8999999999988665666789999999999988642211111  11112211   2346889999999864322111  


Q ss_pred             --HHHHHHHHHcC---CeEEEeeccCCCcHHH
Q 028300          141 --EEGIALAKEHG---SLFLECSAKTRENVEQ  167 (211)
Q Consensus       141 --~~~~~~~~~~~---~~~~~~Sa~~~~gv~~  167 (211)
                        ++...+....+   ++++++||++|.|+.+
T Consensus       156 i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~  187 (406)
T TIGR02034       156 IKKDYLAFAEQLGFRDVTFIPLSALKGDNVVS  187 (406)
T ss_pred             HHHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence              12222333333   4799999999999875

Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).

>cd01886 EF-G Elongation factor G (EF-G) subfamily

Probab=99.71  E-value=1.4e-16  Score=120.42  Aligned_cols=114  Identities=18%  Similarity=0.222  Sum_probs=80.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCCC--C---------------CCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccc
Q 028300           16 KILLIGDSGVGKSSLLVSFISSSV--D---------------DLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTL   78 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~~~--~---------------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~   78 (211)
                      +|+++|++|+|||||+++|+...-  .               ......+.+.......+...+.++.+|||||+.++...
T Consensus         1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~   80 (270)
T cd01886           1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIE   80 (270)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHH
Confidence            589999999999999999974211  0               01123345555444555556788999999999888877


Q ss_pred             hhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCC
Q 028300           79 TSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSE  135 (211)
Q Consensus        79 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~  135 (211)
                      +...++.+|++++|+|+.+...-.. .. +...+.    ..++|+++++||+|+...
T Consensus        81 ~~~~l~~aD~ailVVDa~~g~~~~t-~~-~~~~~~----~~~~p~ivviNK~D~~~a  131 (270)
T cd01886          81 VERSLRVLDGAVAVFDAVAGVEPQT-ET-VWRQAD----RYNVPRIAFVNKMDRTGA  131 (270)
T ss_pred             HHHHHHHcCEEEEEEECCCCCCHHH-HH-HHHHHH----HcCCCEEEEEECCCCCCC
Confidence            8889999999999999987432221 12 222232    347899999999998643

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta

>PLN03127 Elongation factor Tu; Provisional

Probab=99.71  E-value=5.7e-16  Score=124.61  Aligned_cols=159  Identities=14%  Similarity=0.062  Sum_probs=102.0

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhhC------CC---------CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhc
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFISS------SV---------DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFR   76 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~~~------~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~   76 (211)
                      ...++|+++|++++|||||+++|.+.      ..         .......|++.......++....++.|+|+||+.+|-
T Consensus        59 k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~f~  138 (447)
T PLN03127         59 KPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHADYV  138 (447)
T ss_pred             CceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccchH
Confidence            46789999999999999999999722      10         0111235666666666776677789999999998876


Q ss_pred             cchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCcc-EEEEeecCCCCCCcccCH---HHHHHHHHHc--
Q 028300           77 TLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCV-KMLVGNKVDRDSERVVSR---EEGIALAKEH--  150 (211)
Q Consensus        77 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p-~viv~nK~Dl~~~~~v~~---~~~~~~~~~~--  150 (211)
                      ......+..+|++++|+|+.+...-. ... ....+.    ..++| +++++||+|+.+......   .+...+....  
T Consensus       139 ~~~~~g~~~aD~allVVda~~g~~~q-t~e-~l~~~~----~~gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~~~  212 (447)
T PLN03127        139 KNMITGAAQMDGGILVVSAPDGPMPQ-TKE-HILLAR----QVGVPSLVVFLNKVDVVDDEELLELVEMELRELLSFYKF  212 (447)
T ss_pred             HHHHHHHhhCCEEEEEEECCCCCchh-HHH-HHHHHH----HcCCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHhCC
Confidence            55555667899999999988642211 111 222222    34688 478899999864322111   1222333222  


Q ss_pred             ---CCeEEEeecc---CCCc-------HHHHHHHHHHHH
Q 028300          151 ---GSLFLECSAK---TREN-------VEQCFEQLALKI  176 (211)
Q Consensus       151 ---~~~~~~~Sa~---~~~g-------v~~l~~~i~~~~  176 (211)
                         .++++.+|+.   ++.+       +.++++.+.+.+
T Consensus       213 ~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~l  251 (447)
T PLN03127        213 PGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYI  251 (447)
T ss_pred             CCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhC
Confidence               3678888875   4444       566666666544

>PRK00741 prfC peptide chain release factor 3; Provisional

Probab=99.70  E-value=4e-16  Score=127.64  Aligned_cols=117  Identities=16%  Similarity=0.237  Sum_probs=81.6

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhhCC--CCC-------------------CCCccceeeEEEEEEECCEEEEEEEEeCC
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFISSS--VDD-------------------LSPTIGVDFKIKLLTVAGKRLKLTIWDTA   70 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~~~~--~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~l~D~~   70 (211)
                      .+..+|+|+|++++|||||+++|+...  ...                   .....+.++......+...+..+.+||||
T Consensus         8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTP   87 (526)
T PRK00741          8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTP   87 (526)
T ss_pred             hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECC
Confidence            456699999999999999999997411  100                   00112334444444555567889999999


Q ss_pred             ChhhhccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCC
Q 028300           71 GQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDS  134 (211)
Q Consensus        71 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~  134 (211)
                      |+.+|.......++.+|++|+|+|+++.... .... +.....    ..++|+++++||+|+..
T Consensus        88 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~~-~t~~-l~~~~~----~~~iPiiv~iNK~D~~~  145 (526)
T PRK00741         88 GHEDFSEDTYRTLTAVDSALMVIDAAKGVEP-QTRK-LMEVCR----LRDTPIFTFINKLDRDG  145 (526)
T ss_pred             CchhhHHHHHHHHHHCCEEEEEEecCCCCCH-HHHH-HHHHHH----hcCCCEEEEEECCcccc
Confidence            9998887677788999999999999874321 1222 223222    35899999999999743

>cd01885 EF2 EF2 (for archaea and eukarya)

Probab=99.70  E-value=4.8e-16  Score=114.05  Aligned_cols=112  Identities=21%  Similarity=0.275  Sum_probs=77.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCCC--CCCC-------------CccceeeEE--EEEEEC--------CEEEEEEEEeCC
Q 028300           16 KILLIGDSGVGKSSLLVSFISSSV--DDLS-------------PTIGVDFKI--KLLTVA--------GKRLKLTIWDTA   70 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~~~--~~~~-------------~~~~~~~~~--~~~~~~--------~~~~~~~l~D~~   70 (211)
                      +|+++|+.++|||||+.+|+...-  ....             ...+.+...  ....+.        +..+.+.+||||
T Consensus         2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP   81 (222)
T cd01885           2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP   81 (222)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence            699999999999999999985432  1000             011222111  122232        337889999999


Q ss_pred             ChhhhccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCC
Q 028300           71 GQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRD  133 (211)
Q Consensus        71 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~  133 (211)
                      |+.+|.......++.+|++++|+|+++......... +.. ..    ..++|+++++||+|+.
T Consensus        82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~-l~~-~~----~~~~p~ilviNKiD~~  138 (222)
T cd01885          82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETV-LRQ-AL----KERVKPVLVINKIDRL  138 (222)
T ss_pred             CccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHH-HHH-HH----HcCCCEEEEEECCCcc
Confidence            999998888899999999999999998654433221 222 11    2468999999999975

Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco

>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1)

Probab=99.70  E-value=9e-16  Score=111.31  Aligned_cols=163  Identities=14%  Similarity=0.141  Sum_probs=98.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhcc-----------chhhh
Q 028300           15 FKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRT-----------LTSSY   82 (211)
Q Consensus        15 ~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~-----------~~~~~   82 (211)
                      ++|+++|.+|+|||||+|.+++... .......+.+...........+..+.++||||..+...           .....
T Consensus         1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~   80 (196)
T cd01852           1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLS   80 (196)
T ss_pred             CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccCChHHHHHHHHHHHHhc
Confidence            4899999999999999999998764 22211223332222222222456789999999543211           11223


Q ss_pred             ccCCcEEEEEEECCChhhHHHHHHHHHHHhhhh-ccCCCccEEEEeecCCCCCCcccC------HHHHHHHHHHcCCeEE
Q 028300           83 YRGAQGIILVYDVTRRETFTNLSDVWAKEVDLY-STNQDCVKMLVGNKVDRDSERVVS------REEGIALAKEHGSLFL  155 (211)
Q Consensus        83 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~p~viv~nK~Dl~~~~~v~------~~~~~~~~~~~~~~~~  155 (211)
                      ..++|++++|+++.+ .+-.+..  .+..+... ....-.++++++|+.|......+.      ....+.+....+..|+
T Consensus        81 ~~g~~~illVi~~~~-~t~~d~~--~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r~~  157 (196)
T cd01852          81 APGPHAFLLVVPLGR-FTEEEEQ--AVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGRYV  157 (196)
T ss_pred             CCCCEEEEEEEECCC-cCHHHHH--HHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCeEE
Confidence            467899999999887 2222211  23333222 112235889999999975443211      1233444555555665


Q ss_pred             Eee-----ccCCCcHHHHHHHHHHHHHhcc
Q 028300          156 ECS-----AKTRENVEQCFEQLALKIMEVP  180 (211)
Q Consensus       156 ~~S-----a~~~~gv~~l~~~i~~~~~~~~  180 (211)
                      ..+     +..+.++.++++.|.+.+.++.
T Consensus       158 ~f~~~~~~~~~~~q~~~Ll~~i~~~~~~~~  187 (196)
T cd01852         158 AFNNKAKGEEQEQQVKELLAKVESMVKENG  187 (196)
T ss_pred             EEeCCCCcchhHHHHHHHHHHHHHHHHhcC
Confidence            555     4557899999999888887743

This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).

>PTZ00141 elongation factor 1- alpha; Provisional

Probab=99.70  E-value=4.3e-16  Score=125.48  Aligned_cols=152  Identities=20%  Similarity=0.178  Sum_probs=100.6

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHhhCCC--C----------------------------CCCCccceeeEEEEEEECCE
Q 028300           11 YDLSFKILLIGDSGVGKSSLLVSFISSSV--D----------------------------DLSPTIGVDFKIKLLTVAGK   60 (211)
Q Consensus        11 ~~~~~~I~v~G~~~~GKssli~~l~~~~~--~----------------------------~~~~~~~~~~~~~~~~~~~~   60 (211)
                      ....++|+++|+.++|||||+.+|+...-  .                            ......|.+.......+...
T Consensus         4 ~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~   83 (446)
T PTZ00141          4 EKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETP   83 (446)
T ss_pred             CCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccC
Confidence            35678999999999999999999975210  0                            01112345555555566677


Q ss_pred             EEEEEEEeCCChhhhccchhhhccCCcEEEEEEECCChhh---H---HHHHHHHHHHhhhhccCCCcc-EEEEeecCCCC
Q 028300           61 RLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRET---F---TNLSDVWAKEVDLYSTNQDCV-KMLVGNKVDRD  133 (211)
Q Consensus        61 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~~p-~viv~nK~Dl~  133 (211)
                      ...+.|+|+||+.+|.......+..+|++++|+|+++...   +   ..... ....+    ...++| +++++||+|..
T Consensus        84 ~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~e-h~~~~----~~~gi~~iiv~vNKmD~~  158 (446)
T PTZ00141         84 KYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTRE-HALLA----FTLGVKQMIVCINKMDDK  158 (446)
T ss_pred             CeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHH-HHHHH----HHcCCCeEEEEEEccccc
Confidence            7899999999999998777888899999999999986420   0   11111 11122    234666 67899999953


Q ss_pred             C--CcccC----HHHHHHHHHHc-----CCeEEEeeccCCCcHHH
Q 028300          134 S--ERVVS----REEGIALAKEH-----GSLFLECSAKTRENVEQ  167 (211)
Q Consensus       134 ~--~~~v~----~~~~~~~~~~~-----~~~~~~~Sa~~~~gv~~  167 (211)
                      .  ..+-.    ..++..+....     .++++++|+.+|+|+.+
T Consensus       159 ~~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~  203 (446)
T PTZ00141        159 TVNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE  203 (446)
T ss_pred             cchhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence            2  11111    12233333332     36799999999999853

>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.70  E-value=9.7e-16  Score=121.43  Aligned_cols=156  Identities=20%  Similarity=0.209  Sum_probs=111.5

Q ss_pred             CCCCCceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEE--EEECCEEEEEEEEeCCChhhhccchhhhcc
Q 028300            7 QSNSYDLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKL--LTVAGKRLKLTIWDTAGQERFRTLTSSYYR   84 (211)
Q Consensus         7 ~~~~~~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~   84 (211)
                      ++.-.+++.-|.++|+..-|||||+.+|....... ...-|.+...--  +.+. .+..++|.|||||..|..+......
T Consensus       146 p~~l~~RpPVVTiMGHVDHGKTTLLD~lRks~VAA-~E~GGITQhIGAF~V~~p-~G~~iTFLDTPGHaAF~aMRaRGA~  223 (683)
T KOG1145|consen  146 PKLLEPRPPVVTIMGHVDHGKTTLLDALRKSSVAA-GEAGGITQHIGAFTVTLP-SGKSITFLDTPGHAAFSAMRARGAN  223 (683)
T ss_pred             HhhcCCCCCeEEEeecccCChhhHHHHHhhCceeh-hhcCCccceeceEEEecC-CCCEEEEecCCcHHHHHHHHhccCc
Confidence            44556788899999999999999999998665411 112233322222  2233 3367899999999999999999999


Q ss_pred             CCcEEEEEEECCCh---hhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHc-------C--C
Q 028300           85 GAQGIILVYDVTRR---ETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEH-------G--S  152 (211)
Q Consensus        85 ~~d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~-------~--~  152 (211)
                      -.|++++|+.++|.   ++.+.+.         +....+.|+++++||+|.+...   .+...+....+       |  +
T Consensus       224 vtDIvVLVVAadDGVmpQT~EaIk---------hAk~A~VpiVvAinKiDkp~a~---pekv~~eL~~~gi~~E~~GGdV  291 (683)
T KOG1145|consen  224 VTDIVVLVVAADDGVMPQTLEAIK---------HAKSANVPIVVAINKIDKPGAN---PEKVKRELLSQGIVVEDLGGDV  291 (683)
T ss_pred             cccEEEEEEEccCCccHhHHHHHH---------HHHhcCCCEEEEEeccCCCCCC---HHHHHHHHHHcCccHHHcCCce
Confidence            99999999999983   3333322         2356799999999999986543   33333333333       3  3


Q ss_pred             eEEEeeccCCCcHHHHHHHHHHHH
Q 028300          153 LFLECSAKTRENVEQCFEQLALKI  176 (211)
Q Consensus       153 ~~~~~Sa~~~~gv~~l~~~i~~~~  176 (211)
                      .++++||++|.|++.+-+.++-..
T Consensus       292 QvipiSAl~g~nl~~L~eaill~A  315 (683)
T KOG1145|consen  292 QVIPISALTGENLDLLEEAILLLA  315 (683)
T ss_pred             eEEEeecccCCChHHHHHHHHHHH
Confidence            589999999999999988876543

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=99.70  E-value=2e-16  Score=105.14  Aligned_cols=104  Identities=23%  Similarity=0.302  Sum_probs=67.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEE--EEEEECCEEEEEEEEeCCChhh----------hccchhhhc
Q 028300           16 KILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKI--KLLTVAGKRLKLTIWDTAGQER----------FRTLTSSYY   83 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~D~~g~~~----------~~~~~~~~~   83 (211)
                      +|+|+|.+|+|||||+|+|++..........+.+...  ..+.+.+..  +.++|+||...          +.... ..+
T Consensus         1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~~~vDtpG~~~~~~~~~~~~~~~~~~-~~~   77 (116)
T PF01926_consen    1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKK--FILVDTPGINDGESQDNDGKEIRKFL-EQI   77 (116)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEE--EEEEESSSCSSSSHHHHHHHHHHHHH-HHH
T ss_pred             CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceee--EEEEeCCCCcccchhhHHHHHHHHHH-HHH
Confidence            6999999999999999999986543333333333333  233444444  46999999432          11223 334


Q ss_pred             cCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeec
Q 028300           84 RGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNK  129 (211)
Q Consensus        84 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK  129 (211)
                      ..+|++++|+|++++.. +.... +...+    . .+.|+++|+||
T Consensus        78 ~~~d~ii~vv~~~~~~~-~~~~~-~~~~l----~-~~~~~i~v~NK  116 (116)
T PF01926_consen   78 SKSDLIIYVVDASNPIT-EDDKN-ILREL----K-NKKPIILVLNK  116 (116)
T ss_dssp             CTESEEEEEEETTSHSH-HHHHH-HHHHH----H-TTSEEEEEEES
T ss_pred             HHCCEEEEEEECCCCCC-HHHHH-HHHHH----h-cCCCEEEEEcC
Confidence            89999999999887422 12222 33333    2 58999999998

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]

Probab=99.70  E-value=1.1e-16  Score=125.34  Aligned_cols=168  Identities=21%  Similarity=0.222  Sum_probs=118.7

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhcc---------chhhh
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRT---------LTSSY   82 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~---------~~~~~   82 (211)
                      ...+.|+++|+||+|||||+|.|.+.+.....|.+|+++..+...++-.++.+.|.||+|.-+...         -...-
T Consensus       266 q~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~  345 (531)
T KOG1191|consen  266 QSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERARKR  345 (531)
T ss_pred             hcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHHHHH
Confidence            456899999999999999999999999999999999999999998888899999999999654111         13445


Q ss_pred             ccCCcEEEEEEECCChh--hHHHHHHHHHHHhhh-----hccCCCccEEEEeecCCCCCC-cccCHHHHHHHHHHcC---
Q 028300           83 YRGAQGIILVYDVTRRE--TFTNLSDVWAKEVDL-----YSTNQDCVKMLVGNKVDRDSE-RVVSREEGIALAKEHG---  151 (211)
Q Consensus        83 ~~~~d~~i~v~d~~~~~--s~~~~~~~~~~~~~~-----~~~~~~~p~viv~nK~Dl~~~-~~v~~~~~~~~~~~~~---  151 (211)
                      +..+|++++|+|+....  +-..+.. .+.....     -......|++++.||+|+... .+.... ...+....+   
T Consensus       346 ~~~advi~~vvda~~~~t~sd~~i~~-~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~-~~~~~~~~~~~~  423 (531)
T KOG1191|consen  346 IERADVILLVVDAEESDTESDLKIAR-ILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKI-PVVYPSAEGRSV  423 (531)
T ss_pred             HhhcCEEEEEecccccccccchHHHH-HHHHhccceEEEeccccccceEEEechhhccCccccccCC-ceeccccccCcc
Confidence            67899999999994322  2222222 2222111     012345799999999998654 111110 111112112   


Q ss_pred             C-eEEEeeccCCCcHHHHHHHHHHHHHhccc
Q 028300          152 S-LFLECSAKTRENVEQCFEQLALKIMEVPS  181 (211)
Q Consensus       152 ~-~~~~~Sa~~~~gv~~l~~~i~~~~~~~~~  181 (211)
                      . .+.++|+++++|++++.+.+.+.+.....
T Consensus       424 ~~i~~~vs~~tkeg~~~L~~all~~~~~~~~  454 (531)
T KOG1191|consen  424 FPIVVEVSCTTKEGCERLSTALLNIVERLVV  454 (531)
T ss_pred             cceEEEeeechhhhHHHHHHHHHHHHHHhhc
Confidence            2 35669999999999999999988776544

>COG0536 Obg Predicted GTPase [General function prediction only]

Probab=99.69  E-value=5.9e-16  Score=116.53  Aligned_cols=162  Identities=21%  Similarity=0.198  Sum_probs=108.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCCC--CCCCCccc-eeeEEEEEEECCEEEEEEEEeCCChhhhc----cchhh---hccC
Q 028300           16 KILLIGDSGVGKSSLLVSFISSSV--DDLSPTIG-VDFKIKLLTVAGKRLKLTIWDTAGQERFR----TLTSS---YYRG   85 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~----~~~~~---~~~~   85 (211)
                      -|.++|.|++|||||++.+.....  ..|.-|.- ...-.+..   .....+.+-|+||.-+-.    .+-..   -+..
T Consensus       161 DVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~---~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIER  237 (369)
T COG0536         161 DVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRV---DGGESFVVADIPGLIEGASEGVGLGLRFLRHIER  237 (369)
T ss_pred             ccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEe---cCCCcEEEecCcccccccccCCCccHHHHHHHHh
Confidence            467999999999999999998775  33332221 12222222   334468889999943321    22222   3456


Q ss_pred             CcEEEEEEECCChh---hHHHHHHHHHHHhhhhc-cCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEE-eecc
Q 028300           86 AQGIILVYDVTRRE---TFTNLSDVWAKEVDLYS-TNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLE-CSAK  160 (211)
Q Consensus        86 ~d~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~-~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~-~Sa~  160 (211)
                      +-++++|+|++..+   ..++... +..++..+. ...++|.+||+||+|+....+......+.+....++..+. +|+.
T Consensus       238 t~vL~hviD~s~~~~~dp~~~~~~-i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~~~~~~ISa~  316 (369)
T COG0536         238 TRVLLHVIDLSPIDGRDPIEDYQT-IRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALGWEVFYLISAL  316 (369)
T ss_pred             hheeEEEEecCcccCCCHHHHHHH-HHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCCCcceeeehh
Confidence            79999999998654   3666666 666776662 3568999999999996554433333344444445544222 9999


Q ss_pred             CCCcHHHHHHHHHHHHHhccc
Q 028300          161 TRENVEQCFEQLALKIMEVPS  181 (211)
Q Consensus       161 ~~~gv~~l~~~i~~~~~~~~~  181 (211)
                      ++.|++++...+.+.+.....
T Consensus       317 t~~g~~~L~~~~~~~l~~~~~  337 (369)
T COG0536         317 TREGLDELLRALAELLEETKA  337 (369)
T ss_pred             cccCHHHHHHHHHHHHHHhhh
Confidence            999999999999888877753

>cd01850 CDC_Septin CDC/Septin

Probab=99.69  E-value=1.5e-15  Score=115.28  Aligned_cols=144  Identities=17%  Similarity=0.231  Sum_probs=90.5

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhhCCCCCC-----------CCccceeeEEEEEEECCEEEEEEEEeCCChhhhcc----
Q 028300           13 LSFKILLIGDSGVGKSSLLVSFISSSVDDL-----------SPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRT----   77 (211)
Q Consensus        13 ~~~~I~v~G~~~~GKssli~~l~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~----   77 (211)
                      ..++|+++|.+|+|||||+|+|++..+...           .++.........+..++..+.+.+|||||..+...    
T Consensus         3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~   82 (276)
T cd01850           3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDC   82 (276)
T ss_pred             cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhh
Confidence            468999999999999999999998876222           22223333334445566778999999999432110    


Q ss_pred             ----------------------chhhhcc--CCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCC
Q 028300           78 ----------------------LTSSYYR--GAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRD  133 (211)
Q Consensus        78 ----------------------~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~  133 (211)
                                            .....+.  .+|+++|+++.+.. .+......++..+.     .++|+++|+||+|+.
T Consensus        83 ~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~-~l~~~D~~~lk~l~-----~~v~vi~VinK~D~l  156 (276)
T cd01850          83 WKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGH-GLKPLDIEFMKRLS-----KRVNIIPVIAKADTL  156 (276)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCC-CCCHHHHHHHHHHh-----ccCCEEEEEECCCcC
Confidence                                  0101222  46888888887652 11111111333332     268999999999986


Q ss_pred             CCcc--cCHHHHHHHHHHcCCeEEEeeccCC
Q 028300          134 SERV--VSREEGIALAKEHGSLFLECSAKTR  162 (211)
Q Consensus       134 ~~~~--v~~~~~~~~~~~~~~~~~~~Sa~~~  162 (211)
                      ...+  .....+.+.+..+++++|..+....
T Consensus       157 ~~~e~~~~k~~i~~~l~~~~i~~~~~~~~~~  187 (276)
T cd01850         157 TPEELKEFKQRIMEDIEEHNIKIYKFPEDEE  187 (276)
T ss_pred             CHHHHHHHHHHHHHHHHHcCCceECCCCCcc
Confidence            5332  2334456667778888888766433

Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.

>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily

Probab=99.68  E-value=8.3e-16  Score=116.70  Aligned_cols=114  Identities=21%  Similarity=0.313  Sum_probs=77.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCCCC--C---CC--C----------ccceeeEEEEEEECCEEEEEEEEeCCChhhhccc
Q 028300           16 KILLIGDSGVGKSSLLVSFISSSVD--D---LS--P----------TIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTL   78 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~~~~--~---~~--~----------~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~   78 (211)
                      +|+++|++|+|||||+++|+.....  .   ..  .          ..+.+.......+...+..+.+|||||+.++...
T Consensus         1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~   80 (268)
T cd04170           1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGE   80 (268)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHH
Confidence            5899999999999999999754311  0   00  0          0112222222233334578899999999888777


Q ss_pred             hhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCC
Q 028300           79 TSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSE  135 (211)
Q Consensus        79 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~  135 (211)
                      +...+..+|++++|+|+++......... |. .+.    ..++|.++++||+|+...
T Consensus        81 ~~~~l~~aD~~i~Vvd~~~g~~~~~~~~-~~-~~~----~~~~p~iivvNK~D~~~~  131 (268)
T cd04170          81 TRAALRAADAALVVVSAQSGVEVGTEKL-WE-FAD----EAGIPRIIFINKMDRERA  131 (268)
T ss_pred             HHHHHHHCCEEEEEEeCCCCCCHHHHHH-HH-HHH----HcCCCEEEEEECCccCCC
Confidence            8888999999999999998654332222 32 222    347899999999998654

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group

>cd01899 Ygr210 Ygr210 subfamily

Probab=99.67  E-value=1.3e-15  Score=117.24  Aligned_cols=162  Identities=19%  Similarity=0.253  Sum_probs=97.4

Q ss_pred             EEEEcCCCCcHHHHHHHHhhCCCC--CC-----CCccceeeEEEE---------------EEECC-EEEEEEEEeCCCh-
Q 028300           17 ILLIGDSGVGKSSLLVSFISSSVD--DL-----SPTIGVDFKIKL---------------LTVAG-KRLKLTIWDTAGQ-   72 (211)
Q Consensus        17 I~v~G~~~~GKssli~~l~~~~~~--~~-----~~~~~~~~~~~~---------------~~~~~-~~~~~~l~D~~g~-   72 (211)
                      |+++|.|+||||||+++|.+..+.  .+     .|+.|..+....               ...++ ..+.+++||+||. 
T Consensus         1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv   80 (318)
T cd01899           1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV   80 (318)
T ss_pred             CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence            589999999999999999987641  11     222222221100               00112 3467999999996 


Q ss_pred             ---hhhccchhh---hccCCcEEEEEEECCCh-------------h---hHHHHHH---HH---------HH--------
Q 028300           73 ---ERFRTLTSS---YYRGAQGIILVYDVTRR-------------E---TFTNLSD---VW---------AK--------  110 (211)
Q Consensus        73 ---~~~~~~~~~---~~~~~d~~i~v~d~~~~-------------~---s~~~~~~---~~---------~~--------  110 (211)
                         .++..+...   .++++|++++|+|++..             +   .++.+..   .|         ..        
T Consensus        81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~~~d~~~~~~~~~~~dp~~d~~~i~~El~~~d~~~~~~~~~~~~~~~~~~  160 (318)
T cd01899          81 PGAHEGKGLGNKFLDDLRDADALIHVVDASGGTDAEGNGVETGGHDPLEDIEFLENEIDMWIYGILEKNWEKIVRKADAE  160 (318)
T ss_pred             CCccchhhHHHHHHHHHHHCCEEEEEEeCCCCcccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence               334444334   48999999999999731             1   1111111   01         00        


Q ss_pred             ------------------------Hhhh--------------------hccCCCccEEEEeecCCCCCCcccCHHHHHHH
Q 028300          111 ------------------------EVDL--------------------YSTNQDCVKMLVGNKVDRDSERVVSREEGIAL  146 (211)
Q Consensus       111 ------------------------~~~~--------------------~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~  146 (211)
                                              .+..                    ......+|+++|+||+|+......    ...+
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~llt~KPvI~VlNK~Dl~~~~~~----~~~l  236 (318)
T cd01899         161 KTDIVEALSEQLSGFGVNEKDVIEALEELELPEDLSKWTDEDLLRLARALRKRSKPMVIAANKADIPDAENN----ISKL  236 (318)
T ss_pred             CccHHHHHHHHHhhccccHHHHHHHHHhCCCCCcccCCCHHHHHHHHHHHHhcCCcEEEEEEHHHccChHHH----HHHH
Confidence                                    0000                    001235799999999997433221    1112


Q ss_pred             HHHc-CCeEEEeeccCCCcHHHHHH-HHHHHHHhccch
Q 028300          147 AKEH-GSLFLECSAKTRENVEQCFE-QLALKIMEVPSL  182 (211)
Q Consensus       147 ~~~~-~~~~~~~Sa~~~~gv~~l~~-~i~~~~~~~~~~  182 (211)
                      .... ..+++.+||+.+.++.++.+ .+.+.+.+....
T Consensus       237 ~~~~~~~~iI~iSA~~e~~L~~L~~~~i~~~lPe~~~f  274 (318)
T cd01899         237 RLKYPDEIVVPTSAEAELALRRAAKQGLIKYDPGDSDF  274 (318)
T ss_pred             HhhCCCCeEEEEeCcccccHHHHHHhhHHHhCCCCCCc
Confidence            2222 45799999999999999998 588887665443

Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.

>TIGR00503 prfC peptide chain release factor 3

Probab=99.67  E-value=1.6e-15  Score=124.11  Aligned_cols=117  Identities=17%  Similarity=0.246  Sum_probs=82.9

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHhhCC-C-CC-------------------CCCccceeeEEEEEEECCEEEEEEEEeC
Q 028300           11 YDLSFKILLIGDSGVGKSSLLVSFISSS-V-DD-------------------LSPTIGVDFKIKLLTVAGKRLKLTIWDT   69 (211)
Q Consensus        11 ~~~~~~I~v~G~~~~GKssli~~l~~~~-~-~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~l~D~   69 (211)
                      ..+..+|+|+|++++|||||+++|+... . ..                   .....+.++......++..+..+.+|||
T Consensus         8 ~~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDT   87 (527)
T TIGR00503         8 VDKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDT   87 (527)
T ss_pred             hccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEEC
Confidence            3556799999999999999999986321 1 00                   0012244555555566667789999999


Q ss_pred             CChhhhccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCC
Q 028300           70 AGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRD  133 (211)
Q Consensus        70 ~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~  133 (211)
                      ||+.+|.......++.+|++|+|+|+++.-. ..... +.....    ..++|+++++||+|+.
T Consensus        88 PG~~df~~~~~~~l~~aD~aIlVvDa~~gv~-~~t~~-l~~~~~----~~~~PiivviNKiD~~  145 (527)
T TIGR00503        88 PGHEDFSEDTYRTLTAVDNCLMVIDAAKGVE-TRTRK-LMEVTR----LRDTPIFTFMNKLDRD  145 (527)
T ss_pred             CChhhHHHHHHHHHHhCCEEEEEEECCCCCC-HHHHH-HHHHHH----hcCCCEEEEEECcccc
Confidence            9998887766778899999999999987411 11222 333332    3478999999999974

This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.

>PRK13351 elongation factor G; Reviewed

Probab=99.67  E-value=6.4e-16  Score=131.21  Aligned_cols=117  Identities=16%  Similarity=0.225  Sum_probs=83.3

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhhCCCC-----C---------CC---CccceeeEEEEEEECCEEEEEEEEeCCChhh
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFISSSVD-----D---------LS---PTIGVDFKIKLLTVAGKRLKLTIWDTAGQER   74 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~~~~~~-----~---------~~---~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~   74 (211)
                      ++..+|+|+|+.|+|||||+++|+...-.     .         ..   ...+.+.......+......+.+|||||+.+
T Consensus         6 ~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~d   85 (687)
T PRK13351          6 MQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHID   85 (687)
T ss_pred             ccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHH
Confidence            45679999999999999999999853210     0         00   0122233322333444567899999999999


Q ss_pred             hccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCC
Q 028300           75 FRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDS  134 (211)
Q Consensus        75 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~  134 (211)
                      +...+...++.+|++++|+|+++......... |. .+.    ..++|+++++||+|+..
T Consensus        86 f~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~-~~-~~~----~~~~p~iiviNK~D~~~  139 (687)
T PRK13351         86 FTGEVERSLRVLDGAVVVFDAVTGVQPQTETV-WR-QAD----RYGIPRLIFINKMDRVG  139 (687)
T ss_pred             HHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHH-HH-HHH----hcCCCEEEEEECCCCCC
Confidence            88888889999999999999998665544332 42 222    34789999999999854

>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=99.66  E-value=1.7e-16  Score=111.69  Aligned_cols=119  Identities=22%  Similarity=0.335  Sum_probs=74.9

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEE-CCEEEEEEEEeCCChhhhccchhh---hccCCcEE
Q 028300           14 SFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTV-AGKRLKLTIWDTAGQERFRTLTSS---YYRGAQGI   89 (211)
Q Consensus        14 ~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~g~~~~~~~~~~---~~~~~d~~   89 (211)
                      .-.|+++|+.|+|||+|+.+|..+....+.........   +.+ ......+.++|+|||.+.+.....   .+.++.++
T Consensus         3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~e~n~~---~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~I   79 (181)
T PF09439_consen    3 RPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSMENNIA---YNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGI   79 (181)
T ss_dssp             --EEEEE-STTSSHHHHHHHHHHSS---B---SSEEEE---CCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEE
T ss_pred             CceEEEEcCCCCCHHHHHHHHhcCCcCCeeccccCCce---EEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEE
Confidence            45789999999999999999999866443333322221   111 223456899999999987764433   47889999


Q ss_pred             EEEEECCC-hhhHHHHHHHHHHHhhhhc-cCCCccEEEEeecCCCCCC
Q 028300           90 ILVYDVTR-RETFTNLSDVWAKEVDLYS-TNQDCVKMLVGNKVDRDSE  135 (211)
Q Consensus        90 i~v~d~~~-~~s~~~~~~~~~~~~~~~~-~~~~~p~viv~nK~Dl~~~  135 (211)
                      |||+|.+. ...+.++.+++...+.... ....+|++|++||.|+...
T Consensus        80 IfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A  127 (181)
T PF09439_consen   80 IFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTA  127 (181)
T ss_dssp             EEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT-
T ss_pred             EEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCcccccc
Confidence            99999874 4455666554555554332 3568999999999998654

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=99.66  E-value=1.4e-15  Score=127.95  Aligned_cols=153  Identities=19%  Similarity=0.143  Sum_probs=97.1

Q ss_pred             CCceeeEEEEEcCCCCcHHHHHHHHhhCCCCCC--------------C------------------CccceeeEEEEEEE
Q 028300           10 SYDLSFKILLIGDSGVGKSSLLVSFISSSVDDL--------------S------------------PTIGVDFKIKLLTV   57 (211)
Q Consensus        10 ~~~~~~~I~v~G~~~~GKssli~~l~~~~~~~~--------------~------------------~~~~~~~~~~~~~~   57 (211)
                      .....++|+++|++++|||||+++|+...-...              .                  ...|.+.......+
T Consensus        20 ~~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~   99 (632)
T PRK05506         20 ERKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYF   99 (632)
T ss_pred             cCCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEE
Confidence            345678999999999999999999986432111              0                  01223333333444


Q ss_pred             CCEEEEEEEEeCCChhhhccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcc
Q 028300           58 AGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERV  137 (211)
Q Consensus        58 ~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~  137 (211)
                      ...+.++.|+|+||+.+|.......+..+|++++|+|+++...-... . ....+...   ...++++++||+|+.+...
T Consensus       100 ~~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~-e-~~~~~~~~---~~~~iivvvNK~D~~~~~~  174 (632)
T PRK05506        100 ATPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTR-R-HSFIASLL---GIRHVVLAVNKMDLVDYDQ  174 (632)
T ss_pred             ccCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCH-H-HHHHHHHh---CCCeEEEEEEecccccchh
Confidence            45566889999999988765555678899999999999764221111 1 11112211   2357889999999864222


Q ss_pred             cCH----HHHHHHHHHcC---CeEEEeeccCCCcHHH
Q 028300          138 VSR----EEGIALAKEHG---SLFLECSAKTRENVEQ  167 (211)
Q Consensus       138 v~~----~~~~~~~~~~~---~~~~~~Sa~~~~gv~~  167 (211)
                      ...    .+...+....+   ++++++||++|.|+.+
T Consensus       175 ~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~  211 (632)
T PRK05506        175 EVFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT  211 (632)
T ss_pred             HHHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence            111    12223333444   4699999999999874

>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional

Probab=99.64  E-value=3.6e-15  Score=119.90  Aligned_cols=162  Identities=15%  Similarity=0.149  Sum_probs=101.7

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCC--------ccceeeEEE----------EE-EECC-------------
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFISSSVDDLSP--------TIGVDFKIK----------LL-TVAG-------------   59 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~--------~~~~~~~~~----------~~-~~~~-------------   59 (211)
                      ...++|+++|+...|||||+.+|.+........        ..|......          .+ ....             
T Consensus        32 ~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (460)
T PTZ00327         32 QATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGH  111 (460)
T ss_pred             CCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccccc
Confidence            567899999999999999999999644311111        111111000          00 0000             


Q ss_pred             ---EEEEEEEEeCCChhhhccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCc
Q 028300           60 ---KRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSER  136 (211)
Q Consensus        60 ---~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~  136 (211)
                         ....+.|+|+||++.|.......+..+|++++|+|+++......... ....+..   ..-.++++|+||+|+.+..
T Consensus       112 ~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~e-hl~i~~~---lgi~~iIVvlNKiDlv~~~  187 (460)
T PTZ00327        112 KMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSE-HLAAVEI---MKLKHIIILQNKIDLVKEA  187 (460)
T ss_pred             cccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHH-HHHHHHH---cCCCcEEEEEecccccCHH
Confidence               02468999999999987767777889999999999987311111111 1122221   1234689999999986432


Q ss_pred             ccC--HHHHHHHHHH---cCCeEEEeeccCCCcHHHHHHHHHHHHH
Q 028300          137 VVS--REEGIALAKE---HGSLFLECSAKTRENVEQCFEQLALKIM  177 (211)
Q Consensus       137 ~v~--~~~~~~~~~~---~~~~~~~~Sa~~~~gv~~l~~~i~~~~~  177 (211)
                      ...  .++...+...   ..++++++||++|.|++.+++.|.+.+.
T Consensus       188 ~~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp  233 (460)
T PTZ00327        188 QAQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIP  233 (460)
T ss_pred             HHHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCC
Confidence            221  1222333222   3578999999999999999998887554

>PRK12739 elongation factor G; Reviewed

Probab=99.64  E-value=9.4e-15  Score=123.97  Aligned_cols=117  Identities=17%  Similarity=0.200  Sum_probs=82.8

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhhCCC--C---CCC------------CccceeeEEEEEEECCEEEEEEEEeCCChhh
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFISSSV--D---DLS------------PTIGVDFKIKLLTVAGKRLKLTIWDTAGQER   74 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~~~~~--~---~~~------------~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~   74 (211)
                      ++-.+|+|+|++++|||||+++|+...-  .   ...            ...+++.......+...+.++.|+||||+.+
T Consensus         6 ~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~~   85 (691)
T PRK12739          6 EKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHVD   85 (691)
T ss_pred             cCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHHH
Confidence            4567899999999999999999975311  0   000            1334555444444545667899999999988


Q ss_pred             hccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCC
Q 028300           75 FRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDS  134 (211)
Q Consensus        75 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~  134 (211)
                      +...+...++.+|++++|+|+.+.-..... . ....+.    ..++|.++++||+|+..
T Consensus        86 f~~e~~~al~~~D~~ilVvDa~~g~~~qt~-~-i~~~~~----~~~~p~iv~iNK~D~~~  139 (691)
T PRK12739         86 FTIEVERSLRVLDGAVAVFDAVSGVEPQSE-T-VWRQAD----KYGVPRIVFVNKMDRIG  139 (691)
T ss_pred             HHHHHHHHHHHhCeEEEEEeCCCCCCHHHH-H-HHHHHH----HcCCCEEEEEECCCCCC
Confidence            877788889999999999999875332222 1 222222    34789999999999854

>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.63  E-value=2.9e-15  Score=115.55  Aligned_cols=158  Identities=21%  Similarity=0.157  Sum_probs=106.0

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHhhCCC--C----------------------------CCCCccceeeEEEEEEECCE
Q 028300           11 YDLSFKILLIGDSGVGKSSLLVSFISSSV--D----------------------------DLSPTIGVDFKIKLLTVAGK   60 (211)
Q Consensus        11 ~~~~~~I~v~G~~~~GKssli~~l~~~~~--~----------------------------~~~~~~~~~~~~~~~~~~~~   60 (211)
                      ....++++++|++++|||||+-+|+..--  +                            ......|.+.......++..
T Consensus         4 ~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~   83 (428)
T COG5256           4 EKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETD   83 (428)
T ss_pred             CCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecC
Confidence            35678999999999999999999973221  0                            01123466777777777777


Q ss_pred             EEEEEEEeCCChhhhccchhhhccCCcEEEEEEECCChhhHHH--HHHHHHHHhhhhccCCCccEEEEeecCCCCCCccc
Q 028300           61 RLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTN--LSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVV  138 (211)
Q Consensus        61 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v  138 (211)
                      .+.++++|+||+.+|-.-....+.++|+.|+|+|+.+.+.-..  ........+-......-..+++++||+|+.+.++-
T Consensus        84 k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~lIVavNKMD~v~wde~  163 (428)
T COG5256          84 KYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIKQLIVAVNKMDLVSWDEE  163 (428)
T ss_pred             CceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCCceEEEEEEcccccccCHH
Confidence            8899999999999888777788899999999999998642111  11001111110101223467888999999775444


Q ss_pred             CHHHHH----HHHHHcC-----CeEEEeeccCCCcHHHH
Q 028300          139 SREEGI----ALAKEHG-----SLFLECSAKTRENVEQC  168 (211)
Q Consensus       139 ~~~~~~----~~~~~~~-----~~~~~~Sa~~~~gv~~l  168 (211)
                      ..+++.    .+.+..|     ++|+++|+..|.++.+.
T Consensus       164 rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~  202 (428)
T COG5256         164 RFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKK  202 (428)
T ss_pred             HHHHHHHHHHHHHHHcCCCccCCeEEecccccCCccccc
Confidence            433332    2333332     56999999999998653

>COG1163 DRG Predicted GTPase [General function prediction only]

Probab=99.62  E-value=4.2e-14  Score=105.89  Aligned_cols=161  Identities=20%  Similarity=0.112  Sum_probs=108.1

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhh-------ccchhhhcc
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERF-------RTLTSSYYR   84 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~-------~~~~~~~~~   84 (211)
                      +--.+++++|.|++|||||++.|.+... ....-..++...+...+...+.++++.|+||.-+-       .......++
T Consensus        61 sGda~v~lVGfPsvGKStLL~~LTnt~s-eva~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~grG~~vlsv~R  139 (365)
T COG1163          61 SGDATVALVGFPSVGKSTLLNKLTNTKS-EVADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRGRGRQVLSVAR  139 (365)
T ss_pred             cCCeEEEEEcCCCccHHHHHHHHhCCCc-cccccCceecccccceEeecCceEEEEcCcccccCcccCCCCcceeeeeec
Confidence            4456899999999999999999998764 22233444555555566667889999999984321       123556789


Q ss_pred             CCcEEEEEEECCChhh-HHHHHHHHHH----------------------------------------Hhhhh--------
Q 028300           85 GAQGIILVYDVTRRET-FTNLSDVWAK----------------------------------------EVDLY--------  115 (211)
Q Consensus        85 ~~d~~i~v~d~~~~~s-~~~~~~~~~~----------------------------------------~~~~~--------  115 (211)
                      +||.+++|+|+....+ .+-+...+..                                        .+.++        
T Consensus       140 ~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~  219 (365)
T COG1163         140 NADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVL  219 (365)
T ss_pred             cCCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceEE
Confidence            9999999999997654 3333221111                                        00000        


Q ss_pred             --------------cc-CCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHHHHHHHHHHhcc
Q 028300          116 --------------ST-NQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIMEVP  180 (211)
Q Consensus       116 --------------~~-~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~~~~~~  180 (211)
                                    .. ..-+|.+.|.||+|+...     ++...+.+..  .++.+||..+.|++++.+.|.+.+.-.+
T Consensus       220 Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~~-----e~~~~l~~~~--~~v~isa~~~~nld~L~e~i~~~L~liR  292 (365)
T COG1163         220 IREDVTLDDLIDALEGNRVYKPALYVVNKIDLPGL-----EELERLARKP--NSVPISAKKGINLDELKERIWDVLGLIR  292 (365)
T ss_pred             EecCCcHHHHHHHHhhcceeeeeEEEEecccccCH-----HHHHHHHhcc--ceEEEecccCCCHHHHHHHHHHhhCeEE
Confidence                          00 013688999999998542     2233333322  6999999999999999999988765444

>COG3596 Predicted GTPase [General function prediction only]

Probab=99.61  E-value=6.1e-15  Score=108.22  Aligned_cols=165  Identities=19%  Similarity=0.244  Sum_probs=108.3

Q ss_pred             CCceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcc-ceeeEEEEEEECCEEEEEEEEeCCChh-------hhccchhh
Q 028300           10 SYDLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTI-GVDFKIKLLTVAGKRLKLTIWDTAGQE-------RFRTLTSS   81 (211)
Q Consensus        10 ~~~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~D~~g~~-------~~~~~~~~   81 (211)
                      ....+++|+++|..|+|||||||+|+.++........ +++..... ......-.+.|||+||..       +++.....
T Consensus        35 ~~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~-~~~~~~~~l~lwDtPG~gdg~~~D~~~r~~~~d  113 (296)
T COG3596          35 TEKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRL-RLSYDGENLVLWDTPGLGDGKDKDAEHRQLYRD  113 (296)
T ss_pred             cccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhH-HhhccccceEEecCCCcccchhhhHHHHHHHHH
Confidence            3457899999999999999999999976653333211 21111111 111122568999999943       37777888


Q ss_pred             hccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCc-------ccCHHHHHHHHHH-----
Q 028300           82 YYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSER-------VVSREEGIALAKE-----  149 (211)
Q Consensus        82 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~-------~v~~~~~~~~~~~-----  149 (211)
                      ++...|.++++.++.|++---+... |+..+..   ..+.++++++|.+|...+-       ..+....+++.+.     
T Consensus       114 ~l~~~DLvL~l~~~~draL~~d~~f-~~dVi~~---~~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~  189 (296)
T COG3596         114 YLPKLDLVLWLIKADDRALGTDEDF-LRDVIIL---GLDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEAL  189 (296)
T ss_pred             HhhhccEEEEeccCCCccccCCHHH-HHHHHHh---ccCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHH
Confidence            9999999999999999754333332 4444432   3458999999999975431       1111111222111     


Q ss_pred             ----c-CCeEEEeeccCCCcHHHHHHHHHHHHHhc
Q 028300          150 ----H-GSLFLECSAKTRENVEQCFEQLALKIMEV  179 (211)
Q Consensus       150 ----~-~~~~~~~Sa~~~~gv~~l~~~i~~~~~~~  179 (211)
                          . =-|++..+...+.|++.+...+++.+...
T Consensus       190 ~~~~q~V~pV~~~~~r~~wgl~~l~~ali~~lp~e  224 (296)
T COG3596         190 GRLFQEVKPVVAVSGRLPWGLKELVRALITALPVE  224 (296)
T ss_pred             HHHHhhcCCeEEeccccCccHHHHHHHHHHhCccc
Confidence                1 13688888999999999999999877643

>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]

Probab=99.61  E-value=2e-14  Score=114.12  Aligned_cols=165  Identities=21%  Similarity=0.235  Sum_probs=116.9

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhhCCC--CC------------CCCccceeeEEEEEEE---CCEEEEEEEEeCCChhh
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFISSSV--DD------------LSPTIGVDFKIKLLTV---AGKRLKLTIWDTAGQER   74 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~~~~~--~~------------~~~~~~~~~~~~~~~~---~~~~~~~~l~D~~g~~~   74 (211)
                      ++--++.|+-+..-|||||..+|+...-  +.            .....|.+.....-.+   .+..+.++++|||||-+
T Consensus        58 ~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvD  137 (650)
T KOG0462|consen   58 ENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVD  137 (650)
T ss_pred             hhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCccc
Confidence            5556899999999999999999985332  11            1123454444433222   35669999999999999


Q ss_pred             hccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHH-HHHHHHHHcCCe
Q 028300           75 FRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSRE-EGIALAKEHGSL  153 (211)
Q Consensus        75 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~-~~~~~~~~~~~~  153 (211)
                      |.......+.-+|++|+|+|++..-.-+.+..+|+.      ...+..++.|+||+|++.++....+ +..+.+.....+
T Consensus       138 Fs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lA------fe~~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~~~~~  211 (650)
T KOG0462|consen  138 FSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLA------FEAGLAIIPVLNKIDLPSADPERVENQLFELFDIPPAE  211 (650)
T ss_pred             ccceehehhhhcCceEEEEEcCcCchHHHHHHHHHH------HHcCCeEEEeeeccCCCCCCHHHHHHHHHHHhcCCccc
Confidence            999899999999999999999975333333322221      2457889999999999766543222 223333334457


Q ss_pred             EEEeeccCCCcHHHHHHHHHHHHHhccch
Q 028300          154 FLECSAKTRENVEQCFEQLALKIMEVPSL  182 (211)
Q Consensus       154 ~~~~Sa~~~~gv~~l~~~i~~~~~~~~~~  182 (211)
                      ++.+||++|.|+.+++++|++.+..-...
T Consensus       212 ~i~vSAK~G~~v~~lL~AII~rVPpP~~~  240 (650)
T KOG0462|consen  212 VIYVSAKTGLNVEELLEAIIRRVPPPKGI  240 (650)
T ss_pred             eEEEEeccCccHHHHHHHHHhhCCCCCCC
Confidence            99999999999999999999987665543

>PRK09602 translation-associated GTPase; Reviewed

Probab=99.61  E-value=3.6e-14  Score=112.40  Aligned_cols=82  Identities=26%  Similarity=0.411  Sum_probs=53.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhhCCCC--CCC-----CccceeeEEEE--------------E-EEC-CEEEEEEEEeCCC
Q 028300           15 FKILLIGDSGVGKSSLLVSFISSSVD--DLS-----PTIGVDFKIKL--------------L-TVA-GKRLKLTIWDTAG   71 (211)
Q Consensus        15 ~~I~v~G~~~~GKssli~~l~~~~~~--~~~-----~~~~~~~~~~~--------------~-~~~-~~~~~~~l~D~~g   71 (211)
                      ++|+++|.|+||||||+++|.+..+.  .+.     |+.|.......              . ..+ .....+++||+||
T Consensus         2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG   81 (396)
T PRK09602          2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG   81 (396)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence            58999999999999999999987762  221     22222111000              0 011 2346789999999


Q ss_pred             h----hhhccchhhh---ccCCcEEEEEEECC
Q 028300           72 Q----ERFRTLTSSY---YRGAQGIILVYDVT   96 (211)
Q Consensus        72 ~----~~~~~~~~~~---~~~~d~~i~v~d~~   96 (211)
                      .    .....+...+   ++.+|++++|+|+.
T Consensus        82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~  113 (396)
T PRK09602         82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS  113 (396)
T ss_pred             cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence            4    2233333344   88999999999997

>TIGR00484 EF-G translation elongation factor EF-G

Probab=99.61  E-value=1.3e-14  Score=123.09  Aligned_cols=118  Identities=17%  Similarity=0.204  Sum_probs=84.4

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhhCCC--C---CCC------------CccceeeEEEEEEECCEEEEEEEEeCCChhh
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFISSSV--D---DLS------------PTIGVDFKIKLLTVAGKRLKLTIWDTAGQER   74 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~~~~~--~---~~~------------~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~   74 (211)
                      ++-.+|+|+|++++|||||+++|+...-  .   ...            ...+++.......+...+.++.||||||+.+
T Consensus         8 ~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~   87 (689)
T TIGR00484         8 NRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVD   87 (689)
T ss_pred             ccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcc
Confidence            3456999999999999999999974221  0   010            1234555555555555678899999999988


Q ss_pred             hccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCC
Q 028300           75 FRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSE  135 (211)
Q Consensus        75 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~  135 (211)
                      +...+...++.+|++++|+|+.+......... |. .+.    ..++|+++++||+|+...
T Consensus        88 ~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~-~~-~~~----~~~~p~ivviNK~D~~~~  142 (689)
T TIGR00484        88 FTVEVERSLRVLDGAVAVLDAVGGVQPQSETV-WR-QAN----RYEVPRIAFVNKMDKTGA  142 (689)
T ss_pred             hhHHHHHHHHHhCEEEEEEeCCCCCChhHHHH-HH-HHH----HcCCCEEEEEECCCCCCC
Confidence            87778888999999999999987544333221 32 222    347899999999998654

After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.

>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.57  E-value=6.6e-14  Score=98.81  Aligned_cols=156  Identities=21%  Similarity=0.256  Sum_probs=99.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhcc---CCcEEEE
Q 028300           15 FKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYR---GAQGIIL   91 (211)
Q Consensus        15 ~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~---~~d~~i~   91 (211)
                      -.|.++|+.+||||+|+-+|..+.+..+.........  .+.+  ..-.++++|.|||.+.+.-...++.   .+-++++
T Consensus        39 ~~Vll~Gl~dSGKT~LF~qL~~gs~~~TvtSiepn~a--~~r~--gs~~~~LVD~PGH~rlR~kl~e~~~~~~~akaiVF  114 (238)
T KOG0090|consen   39 NAVLLVGLSDSGKTSLFTQLITGSHRGTVTSIEPNEA--TYRL--GSENVTLVDLPGHSRLRRKLLEYLKHNYSAKAIVF  114 (238)
T ss_pred             CcEEEEecCCCCceeeeeehhcCCccCeeeeecccee--eEee--cCcceEEEeCCCcHHHHHHHHHHccccccceeEEE
Confidence            5789999999999999999998865333322222211  1122  2223789999999988876666666   7899999


Q ss_pred             EEECCC-hhhHHHHHHHHHHHhh-hhccCCCccEEEEeecCCCCCCcccCH------HHH------HH------------
Q 028300           92 VYDVTR-RETFTNLSDVWAKEVD-LYSTNQDCVKMLVGNKVDRDSERVVSR------EEG------IA------------  145 (211)
Q Consensus        92 v~d~~~-~~s~~~~~~~~~~~~~-~~~~~~~~p~viv~nK~Dl~~~~~v~~------~~~------~~------------  145 (211)
                      |+|... .-...++..++...+- .......+|++|++||.|+..+.....      .|+      +.            
T Consensus       115 VVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~~ed~~~  194 (238)
T KOG0090|consen  115 VVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRSISDEDIAK  194 (238)
T ss_pred             EEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhccccccccc
Confidence            999654 2234444443333332 222356899999999999843321000      000      00            


Q ss_pred             ------------HHH--HcCCeEEEeeccCCCcHHHHHHHHHHH
Q 028300          146 ------------LAK--EHGSLFLECSAKTRENVEQCFEQLALK  175 (211)
Q Consensus       146 ------------~~~--~~~~~~~~~Sa~~~~gv~~l~~~i~~~  175 (211)
                                  |.+  ...+.|.+.|++++ +++++-+||.+.
T Consensus       195 ~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~  237 (238)
T KOG0090|consen  195 DFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREA  237 (238)
T ss_pred             cccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHh
Confidence                        000  12345788888888 899999998764

>PRK00007 elongation factor G; Reviewed

Probab=99.57  E-value=1.1e-13  Score=117.38  Aligned_cols=117  Identities=18%  Similarity=0.237  Sum_probs=81.7

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHhhCC--CC---CCC------------CccceeeEEEEEEECCEEEEEEEEeCCChh
Q 028300           11 YDLSFKILLIGDSGVGKSSLLVSFISSS--VD---DLS------------PTIGVDFKIKLLTVAGKRLKLTIWDTAGQE   73 (211)
Q Consensus        11 ~~~~~~I~v~G~~~~GKssli~~l~~~~--~~---~~~------------~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~   73 (211)
                      .++-.+|+|+|++++|||||+++|+...  ..   ...            ...+++.......+...+..+.|+||||+.
T Consensus         7 ~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~   86 (693)
T PRK00007          7 LERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHV   86 (693)
T ss_pred             ccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcH
Confidence            3455699999999999999999997421  10   011            234455555444554556789999999998


Q ss_pred             hhccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCC
Q 028300           74 RFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRD  133 (211)
Q Consensus        74 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~  133 (211)
                      +|.......++.+|++++|+|+...-....... |. .+.    ..++|.++++||+|+.
T Consensus        87 ~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~-~~-~~~----~~~~p~iv~vNK~D~~  140 (693)
T PRK00007         87 DFTIEVERSLRVLDGAVAVFDAVGGVEPQSETV-WR-QAD----KYKVPRIAFVNKMDRT  140 (693)
T ss_pred             HHHHHHHHHHHHcCEEEEEEECCCCcchhhHHH-HH-HHH----HcCCCEEEEEECCCCC
Confidence            876667778889999999999876533222221 22 222    3478999999999985

>PRK09866 hypothetical protein; Provisional

Probab=99.57  E-value=1.5e-13  Score=112.19  Aligned_cols=109  Identities=17%  Similarity=0.146  Sum_probs=71.9

Q ss_pred             EEEEEEeCCChhhh-----ccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCc
Q 028300           62 LKLTIWDTAGQERF-----RTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSER  136 (211)
Q Consensus        62 ~~~~l~D~~g~~~~-----~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~  136 (211)
                      .++.|+||||....     .......+..+|+++||+|+....+..+..  +...+...  ....|+++|+||+|+.+..
T Consensus       230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~Dee--Ilk~Lkk~--~K~~PVILVVNKIDl~dre  305 (741)
T PRK09866        230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISDEE--VREAILAV--GQSVPLYVLVNKFDQQDRN  305 (741)
T ss_pred             CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhHHH--HHHHHHhc--CCCCCEEEEEEcccCCCcc
Confidence            46889999995431     223445789999999999998753333321  33444322  1135999999999985433


Q ss_pred             ccCHHHHHHHHH----HcC---CeEEEeeccCCCcHHHHHHHHHH
Q 028300          137 VVSREEGIALAK----EHG---SLFLECSAKTRENVEQCFEQLAL  174 (211)
Q Consensus       137 ~v~~~~~~~~~~----~~~---~~~~~~Sa~~~~gv~~l~~~i~~  174 (211)
                      ....+....+..    ...   ..+|++||++|.|++++++.|..
T Consensus       306 eddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~  350 (741)
T PRK09866        306 SDDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN  350 (741)
T ss_pred             cchHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence            222334444432    122   25999999999999999888776

>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria

Probab=99.55  E-value=7.4e-14  Score=102.33  Aligned_cols=164  Identities=21%  Similarity=0.216  Sum_probs=94.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCc--cceeeEEEEEEECCEEEEEEEEeCCChhhhcc--------c---hh
Q 028300           15 FKILLIGDSGVGKSSLLVSFISSSV-DDLSPT--IGVDFKIKLLTVAGKRLKLTIWDTAGQERFRT--------L---TS   80 (211)
Q Consensus        15 ~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~--------~---~~   80 (211)
                      ++|+++|..|+||||++|.+++... ......  .............+  ..+.++||||..+...        +   ..
T Consensus         1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g--~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~   78 (212)
T PF04548_consen    1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDG--RQVTVIDTPGLFDSDGSDEEIIREIKRCLS   78 (212)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETT--EEEEEEE--SSEETTEEHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecc--eEEEEEeCCCCCCCcccHHHHHHHHHHHHH
Confidence            5899999999999999999998775 222111  12223223334444  5678999999432211        0   11


Q ss_pred             hhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccC-------HHHHHHHHHHcCCe
Q 028300           81 SYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVS-------REEGIALAKEHGSL  153 (211)
Q Consensus        81 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~-------~~~~~~~~~~~~~~  153 (211)
                      ....+.+++|||+.+... +-.+... +..+...+....-..++||+|..|......+.       ......+....+-.
T Consensus        79 ~~~~g~ha~llVi~~~r~-t~~~~~~-l~~l~~~FG~~~~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~~R  156 (212)
T PF04548_consen   79 LCSPGPHAFLLVIPLGRF-TEEDREV-LELLQEIFGEEIWKHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKCGGR  156 (212)
T ss_dssp             HTTT-ESEEEEEEETTB--SHHHHHH-HHHHHHHHCGGGGGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             hccCCCeEEEEEEecCcc-hHHHHHH-HHHHHHHccHHHHhHhhHHhhhccccccccHHHHHhccCchhHhHHhhhcCCE
Confidence            234578999999999832 2222221 22222222122234689999999875544321       11234455566777


Q ss_pred             EEEeecc------CCCcHHHHHHHHHHHHHhccch
Q 028300          154 FLECSAK------TRENVEQCFEQLALKIMEVPSL  182 (211)
Q Consensus       154 ~~~~Sa~------~~~gv~~l~~~i~~~~~~~~~~  182 (211)
                      |...+..      ....+.++++.|-+.+.++...
T Consensus       157 ~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n~g~  191 (212)
T PF04548_consen  157 YHVFNNKTKDKEKDESQVSELLEKIEEMVQENGGQ  191 (212)
T ss_dssp             EEECCTTHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred             EEEEeccccchhhhHHHHHHHHHHHHHHHHHcCCC
Confidence            8777766      3467888888888888777643

The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....

>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase)

Probab=99.55  E-value=1.5e-13  Score=104.16  Aligned_cols=128  Identities=16%  Similarity=0.193  Sum_probs=73.3

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccc-------hhhhc
Q 028300           11 YDLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTL-------TSSYY   83 (211)
Q Consensus        11 ~~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~-------~~~~~   83 (211)
                      ....++|+++|.+|+||||++|++++..........+.+...........+..+.+|||||..+....       ...++
T Consensus        35 ~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G~~l~VIDTPGL~d~~~~~e~~~~~ik~~l  114 (313)
T TIGR00991        35 DVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAGFTLNIIDTPGLIEGGYINDQAVNIIKRFL  114 (313)
T ss_pred             cccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEECCCCCchHHHHHHHHHHHHHHh
Confidence            35788999999999999999999998765332222222222111222224578999999996543211       11111


Q ss_pred             --cCCcEEEEEEECCChhhHHHHHHHHHHHhhh-hccCCCccEEEEeecCCCCCCcccC
Q 028300           84 --RGAQGIILVYDVTRRETFTNLSDVWAKEVDL-YSTNQDCVKMLVGNKVDRDSERVVS  139 (211)
Q Consensus        84 --~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~~p~viv~nK~Dl~~~~~v~  139 (211)
                        ...|+++||..++... +......+...+.. +...--.++++++|+.|..+.+...
T Consensus       115 ~~~g~DvVLyV~rLD~~R-~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~pd~~~  172 (313)
T TIGR00991       115 LGKTIDVLLYVDRLDAYR-VDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSPPDGLE  172 (313)
T ss_pred             hcCCCCEEEEEeccCccc-CCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCCCCCCC
Confidence              2689999997655321 11111112222222 1122235789999999976544333

>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]

Probab=99.54  E-value=6.9e-14  Score=90.35  Aligned_cols=136  Identities=23%  Similarity=0.213  Sum_probs=94.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhh----hccchhhhccCCcEEEE
Q 028300           16 KILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER----FRTLTSSYYRGAQGIIL   91 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~----~~~~~~~~~~~~d~~i~   91 (211)
                      ||+++|..|+|||||.+.+.+... .+..|...++.       ..    -.+|+||.--    +-.........+|++++
T Consensus         3 ri~~vG~~gcGKTtL~q~L~G~~~-lykKTQAve~~-------d~----~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~   70 (148)
T COG4917           3 RIAFVGQVGCGKTTLFQSLYGNDT-LYKKTQAVEFN-------DK----GDIDTPGEYFEHPRWYHALITTLQDADVIIY   70 (148)
T ss_pred             eeEEecccccCchhHHHHhhcchh-hhcccceeecc-------Cc----cccCCchhhhhhhHHHHHHHHHhhccceeee
Confidence            799999999999999999987643 22222222211       11    1359999432    21223445678899999


Q ss_pred             EEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCC-eEEEeeccCCCcHHHHHH
Q 028300           92 VYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGS-LFLECSAKTRENVEQCFE  170 (211)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~gv~~l~~  170 (211)
                      |-.++++.+.-...         +......|+|-|++|+|+.+..  +....+.+..+.|+ ++|++|+.++.|++++++
T Consensus        71 v~~and~~s~f~p~---------f~~~~~k~vIgvVTK~DLaed~--dI~~~~~~L~eaGa~~IF~~s~~d~~gv~~l~~  139 (148)
T COG4917          71 VHAANDPESRFPPG---------FLDIGVKKVIGVVTKADLAEDA--DISLVKRWLREAGAEPIFETSAVDNQGVEELVD  139 (148)
T ss_pred             eecccCccccCCcc---------cccccccceEEEEecccccchH--hHHHHHHHHHHcCCcceEEEeccCcccHHHHHH
Confidence            99999986533222         2234566799999999997533  44566777788786 599999999999999998


Q ss_pred             HHHH
Q 028300          171 QLAL  174 (211)
Q Consensus       171 ~i~~  174 (211)
                      .+..
T Consensus       140 ~L~~  143 (148)
T COG4917         140 YLAS  143 (148)
T ss_pred             HHHh
Confidence            8654

>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts)

Probab=99.54  E-value=1.4e-13  Score=102.75  Aligned_cols=126  Identities=18%  Similarity=0.260  Sum_probs=74.7

Q ss_pred             CCCceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhc--c-c-------
Q 028300            9 NSYDLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFR--T-L-------   78 (211)
Q Consensus         9 ~~~~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~--~-~-------   78 (211)
                      .....+++|+++|.+|+|||||+|+|++..........+.+.....+.....+..+.+|||||..+..  . .       
T Consensus        26 ~~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~~~~~~~~~~~~~~  105 (249)
T cd01853          26 EELDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDGFKLNIIDTPGLLESVMDQRVNRKILSS  105 (249)
T ss_pred             hhccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCcCcchhhHHHHHHHHHH
Confidence            34567899999999999999999999987753332222223222223333334678999999955331  0 0       


Q ss_pred             hhhhcc--CCcEEEEEEECCChh-hHHHHHHHHHHHhhh-hccCCCccEEEEeecCCCCCCc
Q 028300           79 TSSYYR--GAQGIILVYDVTRRE-TFTNLSDVWAKEVDL-YSTNQDCVKMLVGNKVDRDSER  136 (211)
Q Consensus        79 ~~~~~~--~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~-~~~~~~~p~viv~nK~Dl~~~~  136 (211)
                      ...++.  ..|++++|..++... ...+. . +.+.+.. +...--.++++|.||+|...+.
T Consensus       106 I~~~l~~~~idvIL~V~rlD~~r~~~~d~-~-llk~I~e~fG~~i~~~~ivV~T~~d~~~p~  165 (249)
T cd01853         106 IKRYLKKKTPDVVLYVDRLDMYRRDYLDL-P-LLRAITDSFGPSIWRNAIVVLTHAASSPPD  165 (249)
T ss_pred             HHHHHhccCCCEEEEEEcCCCCCCCHHHH-H-HHHHHHHHhChhhHhCEEEEEeCCccCCCC
Confidence            112232  578888887766431 22211 1 2222322 2111224799999999986443

This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.

>PRK12740 elongation factor G; Reviewed

Probab=99.53  E-value=8.5e-14  Score=118.15  Aligned_cols=108  Identities=20%  Similarity=0.289  Sum_probs=74.7

Q ss_pred             EcCCCCcHHHHHHHHhhCCCC--C---CC------------CccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhh
Q 028300           20 IGDSGVGKSSLLVSFISSSVD--D---LS------------PTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSY   82 (211)
Q Consensus        20 ~G~~~~GKssli~~l~~~~~~--~---~~------------~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~   82 (211)
                      +|++++|||||+++|+...-.  .   ..            ...+.+.......+...+..+.+|||||+.++...+...
T Consensus         1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~   80 (668)
T PRK12740          1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERA   80 (668)
T ss_pred             CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHH
Confidence            599999999999999643210  0   00            012333333333444456789999999998887777888


Q ss_pred             ccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCC
Q 028300           83 YRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRD  133 (211)
Q Consensus        83 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~  133 (211)
                      +..+|++++|+|+++......... |. .+.    ..++|+++|+||+|+.
T Consensus        81 l~~aD~vllvvd~~~~~~~~~~~~-~~-~~~----~~~~p~iiv~NK~D~~  125 (668)
T PRK12740         81 LRVLDGAVVVVCAVGGVEPQTETV-WR-QAE----KYGVPRIIFVNKMDRA  125 (668)
T ss_pred             HHHhCeEEEEEeCCCCcCHHHHHH-HH-HHH----HcCCCEEEEEECCCCC
Confidence            999999999999988654433322 32 222    3478999999999975

>cd00066 G-alpha G protein alpha subunit

Probab=99.53  E-value=3.1e-13  Score=104.69  Aligned_cols=120  Identities=18%  Similarity=0.178  Sum_probs=86.2

Q ss_pred             CEEEEEEEEeCCChhhhccchhhhccCCcEEEEEEECCCh----------hhHHHHHHHHHHHhhhhccCCCccEEEEee
Q 028300           59 GKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRR----------ETFTNLSDVWAKEVDLYSTNQDCVKMLVGN  128 (211)
Q Consensus        59 ~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~~~~~~p~viv~n  128 (211)
                      .....+.+||++|+...+..|..++.+++++++|+|+++-          +.+.+....+...+... .-.++|+++++|
T Consensus       158 ~~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~-~~~~~pill~~N  236 (317)
T cd00066         158 IKNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSR-WFANTSIILFLN  236 (317)
T ss_pred             ecceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCc-cccCCCEEEEcc
Confidence            3467899999999999999999999999999999999973          45666666455554432 346899999999


Q ss_pred             cCCCCCCc----------------ccCHHHHHHHHHH----------cCCeEEEeeccCCCcHHHHHHHHHHHHHhc
Q 028300          129 KVDRDSER----------------VVSREEGIALAKE----------HGSLFLECSAKTRENVEQCFEQLALKIMEV  179 (211)
Q Consensus       129 K~Dl~~~~----------------~v~~~~~~~~~~~----------~~~~~~~~Sa~~~~gv~~l~~~i~~~~~~~  179 (211)
                      |.|+..++                .-..+.+..+...          ..+-+..++|.+..+++.+|+.+.+.+...
T Consensus       237 K~D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~~i~~~  313 (317)
T cd00066         237 KKDLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKDIILQN  313 (317)
T ss_pred             ChHHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHHHHHHHH
Confidence            99963211                1123333333321          123357788999999999999988877654

The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.

>PRK13768 GTPase; Provisional

Probab=99.51  E-value=2e-13  Score=102.54  Aligned_cols=115  Identities=18%  Similarity=0.126  Sum_probs=71.9

Q ss_pred             EEEEEeCCChhhh---ccchhhhccC-----CcEEEEEEECCChhhHHHHHHH-HHHHhhhhccCCCccEEEEeecCCCC
Q 028300           63 KLTIWDTAGQERF---RTLTSSYYRG-----AQGIILVYDVTRRETFTNLSDV-WAKEVDLYSTNQDCVKMLVGNKVDRD  133 (211)
Q Consensus        63 ~~~l~D~~g~~~~---~~~~~~~~~~-----~d~~i~v~d~~~~~s~~~~~~~-~~~~~~~~~~~~~~p~viv~nK~Dl~  133 (211)
                      .+.+||+||+.+.   +..+..+++.     .+++++++|+.......+.... |.......  ..++|+++|+||+|+.
T Consensus        98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~--~~~~~~i~v~nK~D~~  175 (253)
T PRK13768         98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQL--RLGLPQIPVLNKADLL  175 (253)
T ss_pred             CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHH--HcCCCEEEEEEhHhhc
Confidence            6889999997653   3333333322     8999999999754433332221 22222211  2479999999999986


Q ss_pred             CCcccCHH--HHH------------------------HHHHHcC--CeEEEeeccCCCcHHHHHHHHHHHHHhc
Q 028300          134 SERVVSRE--EGI------------------------ALAKEHG--SLFLECSAKTRENVEQCFEQLALKIMEV  179 (211)
Q Consensus       134 ~~~~v~~~--~~~------------------------~~~~~~~--~~~~~~Sa~~~~gv~~l~~~i~~~~~~~  179 (211)
                      ...+....  ...                        +..+..+  .+++++|++++.|+++++++|.+.+...
T Consensus       176 ~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~~~  249 (253)
T PRK13768        176 SEEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFCGG  249 (253)
T ss_pred             CchhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcCCC
Confidence            54332110  000                        1122223  4789999999999999999998877544

>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins

Probab=99.50  E-value=1.2e-12  Score=105.28  Aligned_cols=169  Identities=15%  Similarity=0.270  Sum_probs=117.3

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECC--EEEEEEEEeCCChhhhccchhhhccCC---
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAG--KRLKLTIWDTAGQERFRTLTSSYYRGA---   86 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~D~~g~~~~~~~~~~~~~~~---   86 (211)
                      ...-.|+|+|..++|||||+.+|.+.+  ...++.+.+|....+.-++  ....+.+|.+.|...+..+....+...   
T Consensus        23 ~~~k~vlvlG~~~~GKttli~~L~~~e--~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l~  100 (472)
T PF05783_consen   23 PSEKSVLVLGDKGSGKTTLIARLQGIE--DPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENLP  100 (472)
T ss_pred             CCCceEEEEeCCCCchHHHHHHhhccC--CCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCccccc
Confidence            345689999999999999999987553  3445666666655554432  235689999988766777666655533   


Q ss_pred             -cEEEEEEECCChhhHHHHHHHHHHHhh-------------------------hh-------------------------
Q 028300           87 -QGIILVYDVTRRETFTNLSDVWAKEVD-------------------------LY-------------------------  115 (211)
Q Consensus        87 -d~~i~v~d~~~~~s~~~~~~~~~~~~~-------------------------~~-------------------------  115 (211)
                       -.+++|+|.+.|..+-+-...|...++                         .+                         
T Consensus       101 ~t~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~~~  180 (472)
T PF05783_consen  101 NTLVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSSDDE  180 (472)
T ss_pred             ceEEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCcccccccccccccc
Confidence             578899999998764433333544332                         00                         


Q ss_pred             -----------ccCCCccEEEEeecCCCCC----Ccc-------cCHHHHHHHHHHcCCeEEEeeccCCCcHHHHHHHHH
Q 028300          116 -----------STNQDCVKMLVGNKVDRDS----ERV-------VSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLA  173 (211)
Q Consensus       116 -----------~~~~~~p~viv~nK~Dl~~----~~~-------v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~  173 (211)
                                 ....++|++||++|+|...    ...       ......+.++..+|+.++.+|++...+++.++..|.
T Consensus       181 ~~~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~~yi~  260 (472)
T PF05783_consen  181 SVLLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNLDLLYKYIL  260 (472)
T ss_pred             cccCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccHHHHHHHHH
Confidence                       0012589999999999632    111       112235666778899999999999999999999999


Q ss_pred             HHHHhccch
Q 028300          174 LKIMEVPSL  182 (211)
Q Consensus       174 ~~~~~~~~~  182 (211)
                      .++....-.
T Consensus       261 h~l~~~~f~  269 (472)
T PF05783_consen  261 HRLYGFPFK  269 (472)
T ss_pred             HHhccCCCC
Confidence            998876543

The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].

>TIGR00101 ureG urease accessory protein UreG

Probab=99.49  E-value=1.3e-12  Score=94.67  Aligned_cols=101  Identities=19%  Similarity=0.178  Sum_probs=63.4

Q ss_pred             EEEEEEeCCChhhhccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccE--EEEeecCCCCCCcccC
Q 028300           62 LKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVK--MLVGNKVDRDSERVVS  139 (211)
Q Consensus        62 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~--viv~nK~Dl~~~~~v~  139 (211)
                      ....++++.|..-.......   -+|.+|.|+|+.+.++....   +.         ..+..  ++++||+|+.+.....
T Consensus        92 ~D~iiIEt~G~~l~~~~~~~---l~~~~i~vvD~~~~~~~~~~---~~---------~qi~~ad~~~~~k~d~~~~~~~~  156 (199)
T TIGR00101        92 LEMVFIESGGDNLSATFSPE---LADLTIFVIDVAAGDKIPRK---GG---------PGITRSDLLVINKIDLAPMVGAD  156 (199)
T ss_pred             CCEEEEECCCCCcccccchh---hhCcEEEEEEcchhhhhhhh---hH---------hHhhhccEEEEEhhhcccccccc
Confidence            34566777773221222211   15889999999976553211   11         12223  8999999997532223


Q ss_pred             HHHHHHHHHH--cCCeEEEeeccCCCcHHHHHHHHHHHHH
Q 028300          140 REEGIALAKE--HGSLFLECSAKTRENVEQCFEQLALKIM  177 (211)
Q Consensus       140 ~~~~~~~~~~--~~~~~~~~Sa~~~~gv~~l~~~i~~~~~  177 (211)
                      .+...+..+.  .+++++++|+++|.|++++|++|.+.++
T Consensus       157 ~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~el~~~i~~~~~  196 (199)
T TIGR00101       157 LGVMERDAKKMRGEKPFIFTNLKTKEGLDTVIDWIEHYAL  196 (199)
T ss_pred             HHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence            3333344443  4578999999999999999999987653

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]

Probab=99.49  E-value=1.2e-12  Score=102.62  Aligned_cols=160  Identities=21%  Similarity=0.221  Sum_probs=110.8

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhhCCC--C------C------CCCccceeeEEEE--EEE---CCEEEEEEEEeCCChh
Q 028300           13 LSFKILLIGDSGVGKSSLLVSFISSSV--D------D------LSPTIGVDFKIKL--LTV---AGKRLKLTIWDTAGQE   73 (211)
Q Consensus        13 ~~~~I~v~G~~~~GKssli~~l~~~~~--~------~------~~~~~~~~~~~~~--~~~---~~~~~~~~l~D~~g~~   73 (211)
                      +--+..++-+-.-|||||..+++...-  +      +      .....|.+.....  +.+   ++..+.++|+|||||-
T Consensus         8 ~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHV   87 (603)
T COG0481           8 NIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHV   87 (603)
T ss_pred             hccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCcc
Confidence            334677888999999999999974321  1      0      1122344333322  222   4577999999999999


Q ss_pred             hhccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCe
Q 028300           74 RFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSL  153 (211)
Q Consensus        74 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~  153 (211)
                      +|.......+..+.+.++|+|++..-.-+.+...|+.      ...+.-++-|+||+||+..+...  ...+.-.-.|++
T Consensus        88 DFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlA------le~~LeIiPViNKIDLP~Adper--vk~eIe~~iGid  159 (603)
T COG0481          88 DFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLA------LENNLEIIPVLNKIDLPAADPER--VKQEIEDIIGID  159 (603)
T ss_pred             ceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHH------HHcCcEEEEeeecccCCCCCHHH--HHHHHHHHhCCC
Confidence            9988888888999999999999975333333322221      23577889999999997654321  222333445654


Q ss_pred             ---EEEeeccCCCcHHHHHHHHHHHHHhcc
Q 028300          154 ---FLECSAKTRENVEQCFEQLALKIMEVP  180 (211)
Q Consensus       154 ---~~~~Sa~~~~gv~~l~~~i~~~~~~~~  180 (211)
                         .+.+||++|.||+++++.|++.+..-.
T Consensus       160 ~~dav~~SAKtG~gI~~iLe~Iv~~iP~P~  189 (603)
T COG0481         160 ASDAVLVSAKTGIGIEDVLEAIVEKIPPPK  189 (603)
T ss_pred             cchheeEecccCCCHHHHHHHHHhhCCCCC
Confidence               799999999999999999999876554

>KOG3905 consensus Dynein light intermediate chain [Cell motility]

Probab=99.48  E-value=1.6e-12  Score=97.55  Aligned_cols=166  Identities=17%  Similarity=0.241  Sum_probs=116.0

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECC--EEEEEEEEeCCChhhhccchhhhccCC----
Q 028300           13 LSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAG--KRLKLTIWDTAGQERFRTLTSSYYRGA----   86 (211)
Q Consensus        13 ~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~D~~g~~~~~~~~~~~~~~~----   86 (211)
                      .--+|+|+|..++||||||.+|-+.+  .+..-.+..|-...+.-+.  .-..+.+|=+.|..-+..+....+...    
T Consensus        51 sgk~VlvlGdn~sGKtsLi~klqg~e--~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~ae  128 (473)
T KOG3905|consen   51 SGKNVLVLGDNGSGKTSLISKLQGSE--TVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLAE  128 (473)
T ss_pred             CCCeEEEEccCCCchhHHHHHhhccc--ccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCccc
Confidence            34579999999999999999998776  4445555555555544433  346788999988776666655554433    


Q ss_pred             cEEEEEEECCChhhHHHHHHHHHHHhhhh---------------------------------------------------
Q 028300           87 QGIILVYDVTRRETFTNLSDVWAKEVDLY---------------------------------------------------  115 (211)
Q Consensus        87 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~---------------------------------------------------  115 (211)
                      -.+|++.|++++-.+-+....|...+.++                                                   
T Consensus       129 tlviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de~~  208 (473)
T KOG3905|consen  129 TLVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADEHV  208 (473)
T ss_pred             eEEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCcccccc
Confidence            46889999999944333333366544311                                                   


Q ss_pred             ---------ccCCCccEEEEeecCCCC----CCcc-------cCHHHHHHHHHHcCCeEEEeeccCCCcHHHHHHHHHHH
Q 028300          116 ---------STNQDCVKMLVGNKVDRD----SERV-------VSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALK  175 (211)
Q Consensus       116 ---------~~~~~~p~viv~nK~Dl~----~~~~-------v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~  175 (211)
                               ....++|+++|+||+|..    .+.+       .....++.|+..+|+..+.+|++...+++-++..|.++
T Consensus       209 llPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNidllyKYivhr  288 (473)
T KOG3905|consen  209 LLPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNIDLLYKYIVHR  288 (473)
T ss_pred             ccccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccchHHHHHHHHHH
Confidence                     112468999999999972    1111       11233567777889999999999999999999999998


Q ss_pred             HHhcc
Q 028300          176 IMEVP  180 (211)
Q Consensus       176 ~~~~~  180 (211)
                      ...-.
T Consensus       289 ~yG~~  293 (473)
T KOG3905|consen  289 SYGFP  293 (473)
T ss_pred             hcCcc
Confidence            87654

>smart00275 G_alpha G protein alpha subunit

Probab=99.48  E-value=9.9e-13  Score=102.67  Aligned_cols=120  Identities=16%  Similarity=0.179  Sum_probs=84.9

Q ss_pred             EEEEEEEEeCCChhhhccchhhhccCCcEEEEEEECCCh----------hhHHHHHHHHHHHhhhhccCCCccEEEEeec
Q 028300           60 KRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRR----------ETFTNLSDVWAKEVDLYSTNQDCVKMLVGNK  129 (211)
Q Consensus        60 ~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK  129 (211)
                      ....+.+||++|+...+..|..++.+++++++|+|+++-          +.+.+....|...+... .-.++|++|++||
T Consensus       182 ~~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~-~~~~~piil~~NK  260 (342)
T smart00275      182 KKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSR-WFANTSIILFLNK  260 (342)
T ss_pred             CCeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCc-cccCCcEEEEEec
Confidence            446789999999999999999999999999999999973          35666666555555432 3467999999999


Q ss_pred             CCCCCCc--------------c-cCHHHHHHHHHH-----c------CCeEEEeeccCCCcHHHHHHHHHHHHHhcc
Q 028300          130 VDRDSER--------------V-VSREEGIALAKE-----H------GSLFLECSAKTRENVEQCFEQLALKIMEVP  180 (211)
Q Consensus       130 ~Dl~~~~--------------~-v~~~~~~~~~~~-----~------~~~~~~~Sa~~~~gv~~l~~~i~~~~~~~~  180 (211)
                      .|+..+.              . -..+.+..+...     .      .+-++.++|.+..++..+|+.+.+.+....
T Consensus       261 ~D~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~~~I~~~~  337 (342)
T smart00275      261 IDLFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVKDIILQRN  337 (342)
T ss_pred             HHhHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHHHHHHHHH
Confidence            9973210              0 122233222221     1      133577889999999999998888776543

Subunit of G proteins that contains the guanine nucleotide binding site

>TIGR02836 spore_IV_A stage IV sporulation protein A

Probab=99.47  E-value=1.8e-12  Score=101.07  Aligned_cols=155  Identities=15%  Similarity=0.184  Sum_probs=99.6

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhhC----CCC-----------CCCCccc---eeeEEE-------EEEE-CCEEEEEEE
Q 028300           13 LSFKILLIGDSGVGKSSLLVSFISS----SVD-----------DLSPTIG---VDFKIK-------LLTV-AGKRLKLTI   66 (211)
Q Consensus        13 ~~~~I~v~G~~~~GKssli~~l~~~----~~~-----------~~~~~~~---~~~~~~-------~~~~-~~~~~~~~l   66 (211)
                      -.+-|+|+|+.++|||||||+|.+.    ...           ..++..|   ++..++       .+.. ++....+.+
T Consensus        16 G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vrl   95 (492)
T TIGR02836        16 GDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRL   95 (492)
T ss_pred             CcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEE
Confidence            4578999999999999999999987    333           3344445   332222       2222 345678999


Q ss_pred             EeCCChhhhcc-------c----------------------hhhhcc-CCcEEEEEE-ECC----ChhhHHHHHHHHHHH
Q 028300           67 WDTAGQERFRT-------L----------------------TSSYYR-GAQGIILVY-DVT----RRETFTNLSDVWAKE  111 (211)
Q Consensus        67 ~D~~g~~~~~~-------~----------------------~~~~~~-~~d~~i~v~-d~~----~~~s~~~~~~~~~~~  111 (211)
                      +||+|...-..       -                      ....+. ++|+.|+|. |.+    ..+.+.++...+...
T Consensus        96 IDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~e  175 (492)
T TIGR02836        96 VDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEE  175 (492)
T ss_pred             EECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHH
Confidence            99999322111       0                      233455 899999998 764    123455555557777


Q ss_pred             hhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccC--CCcHHHHHHHHH
Q 028300          112 VDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKT--RENVEQCFEQLA  173 (211)
Q Consensus       112 ~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~--~~gv~~l~~~i~  173 (211)
                      ++..    ++|+++++|+.|-....  .......+...++++++.+|+.+  ...+..+++.++
T Consensus       176 Lk~~----~kPfiivlN~~dp~~~e--t~~l~~~l~eky~vpvl~v~c~~l~~~DI~~il~~vL  233 (492)
T TIGR02836       176 LKEL----NKPFIILLNSTHPYHPE--TEALRQELEEKYDVPVLAMDVESMRESDILSVLEEVL  233 (492)
T ss_pred             HHhc----CCCEEEEEECcCCCCch--hHHHHHHHHHHhCCceEEEEHHHcCHHHHHHHHHHHH
Confidence            7755    99999999999932221  33333455566788888888755  345555555444

A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.

>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]

Probab=99.47  E-value=3.2e-13  Score=106.40  Aligned_cols=169  Identities=14%  Similarity=0.112  Sum_probs=114.1

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhh----ccch-----hh
Q 028300           11 YDLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERF----RTLT-----SS   81 (211)
Q Consensus        11 ~~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~----~~~~-----~~   81 (211)
                      .+..-.++++|.|++|||||++.+.....+ ..|-..++.......++..=..++++||||..+.    .+..     ..
T Consensus       165 Dp~trTlllcG~PNVGKSSf~~~vtradve-vqpYaFTTksL~vGH~dykYlrwQViDTPGILD~plEdrN~IEmqsITA  243 (620)
T KOG1490|consen  165 DPNTRTLLVCGYPNVGKSSFNNKVTRADDE-VQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRNIIEMQIITA  243 (620)
T ss_pred             CCCcCeEEEecCCCCCcHhhcccccccccc-cCCcccccchhhhhhhhhheeeeeecCCccccCcchhhhhHHHHHHHHH
Confidence            345668999999999999999998877652 2333333333333344444567889999994321    1211     22


Q ss_pred             hccCCcEEEEEEECCCh--hhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHH---HHHHHHHcCCeEEE
Q 028300           82 YYRGAQGIILVYDVTRR--ETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREE---GIALAKEHGSLFLE  156 (211)
Q Consensus        82 ~~~~~d~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~---~~~~~~~~~~~~~~  156 (211)
                      ...---+++|+.|++..  .|+..... +...++..  -.+.|+|+|+||+|+.....+..+.   .......-++++++
T Consensus       244 LAHLraaVLYfmDLSe~CGySva~Qvk-LfhsIKpL--FaNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v~v~~  320 (620)
T KOG1490|consen  244 LAHLRSAVLYFMDLSEMCGYSVAAQVK-LYHSIKPL--FANKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNVKVVQ  320 (620)
T ss_pred             HHHhhhhheeeeechhhhCCCHHHHHH-HHHHhHHH--hcCCceEEEeecccccCccccCHHHHHHHHHHHhccCceEEE
Confidence            22334689999999974  35555555 34444433  3589999999999998777666543   23333344589999


Q ss_pred             eeccCCCcHHHHHHHHHHHHHhccchh
Q 028300          157 CSAKTRENVEQCFEQLALKIMEVPSLL  183 (211)
Q Consensus       157 ~Sa~~~~gv~~l~~~i~~~~~~~~~~~  183 (211)
                      +|+.+.+|+.++-....++++..+-..
T Consensus       321 tS~~~eegVm~Vrt~ACe~LLa~RVE~  347 (620)
T KOG1490|consen  321 TSCVQEEGVMDVRTTACEALLAARVEQ  347 (620)
T ss_pred             ecccchhceeeHHHHHHHHHHHHHHHH
Confidence            999999999999999888888776543

>PRK14845 translation initiation factor IF-2; Provisional

Probab=99.47  E-value=1.6e-12  Score=112.85  Aligned_cols=104  Identities=23%  Similarity=0.229  Sum_probs=72.8

Q ss_pred             EEEEeCCChhhhccchhhhccCCcEEEEEEECCC---hhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccC-
Q 028300           64 LTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTR---RETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVS-  139 (211)
Q Consensus        64 ~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~-  139 (211)
                      +.||||||++.|..+....+..+|++++|+|+++   +++++.+.     .+.    ..++|+++|+||+|+....... 
T Consensus       528 i~fiDTPGhe~F~~lr~~g~~~aDivlLVVDa~~Gi~~qT~e~I~-----~lk----~~~iPiIVViNKiDL~~~~~~~~  598 (1049)
T PRK14845        528 LLFIDTPGHEAFTSLRKRGGSLADLAVLVVDINEGFKPQTIEAIN-----ILR----QYKTPFVVAANKIDLIPGWNISE  598 (1049)
T ss_pred             EEEEECCCcHHHHHHHHhhcccCCEEEEEEECcccCCHhHHHHHH-----HHH----HcCCCEEEEEECCCCcccccccc
Confidence            8999999999998877778888999999999987   44444332     222    2368999999999985432210 


Q ss_pred             -----------HHHHH-H-------H---HHH---------------cCCeEEEeeccCCCcHHHHHHHHHHHH
Q 028300          140 -----------REEGI-A-------L---AKE---------------HGSLFLECSAKTRENVEQCFEQLALKI  176 (211)
Q Consensus       140 -----------~~~~~-~-------~---~~~---------------~~~~~~~~Sa~~~~gv~~l~~~i~~~~  176 (211)
                                 .+... +       +   ...               ..++++++||++|+|+++++.+|....
T Consensus       599 ~~~~~~~~~~q~~~~~~el~~~l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~  672 (1049)
T PRK14845        599 DEPFLLNFNEQDQHALTELEIKLYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLA  672 (1049)
T ss_pred             chhhhhhhhhhHHHHHHHHHHHHHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhh
Confidence                       00000 0       0   011               135799999999999999998876543

>TIGR00490 aEF-2 translation elongation factor aEF-2

Probab=99.46  E-value=4.4e-13  Score=114.23  Aligned_cols=116  Identities=19%  Similarity=0.199  Sum_probs=79.4

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhhC---------------CCCC----CCCccceeeEEEEEEECCEEEEEEEEeCCCh
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFISS---------------SVDD----LSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQ   72 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~~~---------------~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~   72 (211)
                      +.-.+|+++|+.++|||||+++|+..               ++..    ...+.........+.+++.++.+.+|||||+
T Consensus        17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~   96 (720)
T TIGR00490        17 KFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGH   96 (720)
T ss_pred             ccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCc
Confidence            34579999999999999999999753               1111    1112222222222345677889999999999


Q ss_pred             hhhccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCC
Q 028300           73 ERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRD  133 (211)
Q Consensus        73 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~  133 (211)
                      .+|.......++.+|++++|+|+.+.-....... |.. .    ...++|.++++||+|..
T Consensus        97 ~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~-~~~-~----~~~~~p~ivviNKiD~~  151 (720)
T TIGR00490        97 VDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETV-LRQ-A----LKENVKPVLFINKVDRL  151 (720)
T ss_pred             cccHHHHHHHHHhcCEEEEEEecCCCCCccHHHH-HHH-H----HHcCCCEEEEEEChhcc
Confidence            9887777888999999999999887322221111 222 1    13467889999999985

This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.

>PTZ00258 GTP-binding protein; Provisional

Probab=99.46  E-value=2.9e-12  Score=100.74  Aligned_cols=84  Identities=21%  Similarity=0.188  Sum_probs=54.9

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEE--CCE---------------EEEEEEEeCCChhh
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTV--AGK---------------RLKLTIWDTAGQER   74 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~---------------~~~~~l~D~~g~~~   74 (211)
                      ....+|+++|.||+|||||+|+|.+... .....++++.......+  .+.               ..++.++|+||...
T Consensus        19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~-~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~   97 (390)
T PTZ00258         19 GNNLKMGIVGLPNVGKSTTFNALCKQQV-PAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVK   97 (390)
T ss_pred             CCCcEEEEECCCCCChHHHHHHHhcCcc-cccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCc
Confidence            5567999999999999999999987654 22223343333222222  211               23589999999432


Q ss_pred             -------hccchhhhccCCcEEEEEEECC
Q 028300           75 -------FRTLTSSYYRGAQGIILVYDVT   96 (211)
Q Consensus        75 -------~~~~~~~~~~~~d~~i~v~d~~   96 (211)
                             ........++.+|++++|+|+.
T Consensus        98 ga~~g~gLg~~fL~~Ir~aD~il~VVd~f  126 (390)
T PTZ00258         98 GASEGEGLGNAFLSHIRAVDGIYHVVRAF  126 (390)
T ss_pred             CCcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence                   1112234567899999999974

>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]

Probab=99.45  E-value=6.4e-13  Score=97.45  Aligned_cols=173  Identities=18%  Similarity=0.175  Sum_probs=100.4

Q ss_pred             CCCCceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcc----------------------------------ceeeEE-
Q 028300            8 SNSYDLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTI----------------------------------GVDFKI-   52 (211)
Q Consensus         8 ~~~~~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~----------------------------------~~~~~~-   52 (211)
                      +.....++.|+++|..|||||||+.+|..+-+....|.-                                  |.+-.. 
T Consensus        13 ~~~~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~   92 (366)
T KOG1532|consen   13 SGAIQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIV   92 (366)
T ss_pred             cccccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchh
Confidence            556678899999999999999999999754331111100                                  000000 


Q ss_pred             --------------EEEEECCEEEEEEEEeCCChhhh------ccchhhhccC--CcEEEEEEECCC---hhhHHHHHHH
Q 028300           53 --------------KLLTVAGKRLKLTIWDTAGQERF------RTLTSSYYRG--AQGIILVYDVTR---RETFTNLSDV  107 (211)
Q Consensus        53 --------------~~~~~~~~~~~~~l~D~~g~~~~------~~~~~~~~~~--~d~~i~v~d~~~---~~s~~~~~~~  107 (211)
                                    ..+.-....+...++||||+-+.      .......+..  .-+++||+|...   +..|-.-.-+
T Consensus        93 TsLNLF~tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlY  172 (366)
T KOG1532|consen   93 TSLNLFATKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLY  172 (366)
T ss_pred             hhHHHHHHHHHHHHHHHHHhhcccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHH
Confidence                          00000112356889999996532      2233333333  356778888543   3333333322


Q ss_pred             HHHHhhhhccCCCccEEEEeecCCCCCCccc-----CHHHHHHHHH--------------------H-cCCeEEEeeccC
Q 028300          108 WAKEVDLYSTNQDCVKMLVGNKVDRDSERVV-----SREEGIALAK--------------------E-HGSLFLECSAKT  161 (211)
Q Consensus       108 ~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v-----~~~~~~~~~~--------------------~-~~~~~~~~Sa~~  161 (211)
                      --.++.    ..+.|+++++||+|+.+..-.     +.+..++...                    . .++..+-+|+.+
T Consensus       173 AcSily----ktklp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~t  248 (366)
T KOG1532|consen  173 ACSILY----KTKLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVT  248 (366)
T ss_pred             HHHHHH----hccCCeEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEeccc
Confidence            333333    458999999999998654210     0011111000                    0 145689999999


Q ss_pred             CCcHHHHHHHHHHHHHhccchhc
Q 028300          162 RENVEQCFEQLALKIMEVPSLLE  184 (211)
Q Consensus       162 ~~gv~~l~~~i~~~~~~~~~~~~  184 (211)
                      |.|++++|..+.+.+.+....+.
T Consensus       249 G~G~ddf~~av~~~vdEy~~~yk  271 (366)
T KOG1532|consen  249 GEGFDDFFTAVDESVDEYEEEYK  271 (366)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHhh
Confidence            99999999998887776654433

>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence

Probab=99.44  E-value=1.3e-12  Score=101.60  Aligned_cols=161  Identities=20%  Similarity=0.209  Sum_probs=83.8

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhhCCC--CCCCCc--cceeeEEEEEEECCEEEEEEEEeCCChhhh-----ccchhhh
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFISSSV--DDLSPT--IGVDFKIKLLTVAGKRLKLTIWDTAGQERF-----RTLTSSY   82 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~-----~~~~~~~   82 (211)
                      ..+++|+|+|.+|+|||||||.|.+-..  +...++  ..++.....+....-+ .+.+||+||..-.     ..+-...
T Consensus        33 ~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~~p-nv~lWDlPG~gt~~f~~~~Yl~~~~  111 (376)
T PF05049_consen   33 NAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPKFP-NVTLWDLPGIGTPNFPPEEYLKEVK  111 (376)
T ss_dssp             H--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS-T-TEEEEEE--GGGSS--HHHHHHHTT
T ss_pred             cCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCCCC-CCeEEeCCCCCCCCCCHHHHHHHcc
Confidence            3578999999999999999999976443  222222  2233444444433222 5899999994321     1223345


Q ss_pred             ccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCC-------CCcccCHHHH----HHHHH---
Q 028300           83 YRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRD-------SERVVSREEG----IALAK---  148 (211)
Q Consensus        83 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~-------~~~~v~~~~~----~~~~~---  148 (211)
                      +...|.+|++.+-.    |......+...+...    ++|+++|-||+|..       .++....+..    ++.+.   
T Consensus       112 ~~~yD~fiii~s~r----f~~ndv~La~~i~~~----gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L  183 (376)
T PF05049_consen  112 FYRYDFFIIISSER----FTENDVQLAKEIQRM----GKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENL  183 (376)
T ss_dssp             GGG-SEEEEEESSS------HHHHHHHHHHHHT----T-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHH
T ss_pred             ccccCEEEEEeCCC----CchhhHHHHHHHHHc----CCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHH
Confidence            67789888776632    223322244455443    89999999999961       1222222222    22221   


Q ss_pred             -HcCC---eEEEeeccCC--CcHHHHHHHHHHHHHhccc
Q 028300          149 -EHGS---LFLECSAKTR--ENVEQCFEQLALKIMEVPS  181 (211)
Q Consensus       149 -~~~~---~~~~~Sa~~~--~gv~~l~~~i~~~~~~~~~  181 (211)
                       ..++   ++|-+|+.+-  .++..+.+.+...+...++
T Consensus       184 ~k~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~Kr  222 (376)
T PF05049_consen  184 QKAGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAHKR  222 (376)
T ss_dssp             HCTT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GGGH
T ss_pred             HHcCCCcCceEEEeCCCcccCChHHHHHHHHHHhHHHHH
Confidence             1233   4899999875  4677788887777766654

IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=99.44  E-value=8.2e-13  Score=98.69  Aligned_cols=96  Identities=21%  Similarity=0.254  Sum_probs=76.1

Q ss_pred             hhhccchhhhccCCcEEEEEEECCChh-hHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcC
Q 028300           73 ERFRTLTSSYYRGAQGIILVYDVTRRE-TFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHG  151 (211)
Q Consensus        73 ~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~  151 (211)
                      +++..+.+.+++++|++++|||++++. ++..+.. |+..+..    .++|++||+||+||.+...+..+....+ ...+
T Consensus        24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r-~l~~~~~----~~i~~vIV~NK~DL~~~~~~~~~~~~~~-~~~g   97 (245)
T TIGR00157        24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDR-FLVVAEA----QNIEPIIVLNKIDLLDDEDMEKEQLDIY-RNIG   97 (245)
T ss_pred             cccceEECcccccCCEEEEEEECCCCCCCHHHHHH-HHHHHHH----CCCCEEEEEECcccCCCHHHHHHHHHHH-HHCC
Confidence            567777888999999999999999887 7877766 7765542    5899999999999976554443334333 4578


Q ss_pred             CeEEEeeccCCCcHHHHHHHHHH
Q 028300          152 SLFLECSAKTRENVEQCFEQLAL  174 (211)
Q Consensus       152 ~~~~~~Sa~~~~gv~~l~~~i~~  174 (211)
                      .+++++||+++.|++++|+.+..
T Consensus        98 ~~v~~~SAktg~gi~eLf~~l~~  120 (245)
T TIGR00157        98 YQVLMTSSKNQDGLKELIEALQN  120 (245)
T ss_pred             CeEEEEecCCchhHHHHHhhhcC
Confidence            89999999999999999987753

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]

Probab=99.43  E-value=1.5e-12  Score=104.30  Aligned_cols=168  Identities=21%  Similarity=0.186  Sum_probs=112.3

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhhCC----------------------C--------CCCCCccceeeEEEEEEECCEE
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFISSS----------------------V--------DDLSPTIGVDFKIKLLTVAGKR   61 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~~~~----------------------~--------~~~~~~~~~~~~~~~~~~~~~~   61 (211)
                      ...+..+++|+.++|||||+.+++..-                      |        .......|.++.....+++...
T Consensus       175 k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~~  254 (603)
T KOG0458|consen  175 KDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESKS  254 (603)
T ss_pred             ccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecCc
Confidence            367899999999999999999987211                      0        1112345677777777887778


Q ss_pred             EEEEEEeCCChhhhccchhhhccCCcEEEEEEECCChh---hHH---HHHHHHHHHhhhhccCCCccEEEEeecCCCCCC
Q 028300           62 LKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRE---TFT---NLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSE  135 (211)
Q Consensus        62 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~---~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~  135 (211)
                      ..++|+|+||+..|..-......++|+.++|+|++..+   .|+   ..++ ....++.   ..-..++|++||+|+...
T Consensus       255 ~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrE-ha~llr~---Lgi~qlivaiNKmD~V~W  330 (603)
T KOG0458|consen  255 KIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTRE-HALLLRS---LGISQLIVAINKMDLVSW  330 (603)
T ss_pred             eeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHH-HHHHHHH---cCcceEEEEeecccccCc
Confidence            88999999999999888888889999999999998642   121   1111 2222222   224567899999999766


Q ss_pred             cccCHHHHH----HHH-HHcC-----CeEEEeeccCCCcHHHH-HHHHHHHHHhccchh
Q 028300          136 RVVSREEGI----ALA-KEHG-----SLFLECSAKTRENVEQC-FEQLALKIMEVPSLL  183 (211)
Q Consensus       136 ~~v~~~~~~----~~~-~~~~-----~~~~~~Sa~~~~gv~~l-~~~i~~~~~~~~~~~  183 (211)
                      .+-..++++    .|. +..|     +.|++||+..|+|+-.. -+.-+..+++.....
T Consensus       331 sq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~~~~~~l~~WY~Gp~LL  389 (603)
T KOG0458|consen  331 SQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKIEQENELSQWYKGPTLL  389 (603)
T ss_pred             cHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCcccccccchhhhhhhcCChHH
Confidence            554444433    222 2333     35999999999998544 222333444444433

>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]

Probab=99.43  E-value=3.5e-12  Score=96.72  Aligned_cols=151  Identities=19%  Similarity=0.147  Sum_probs=104.8

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHhhCCCCC--------------------------------CCCccceeeEEEEEEEC
Q 028300           11 YDLSFKILLIGDSGVGKSSLLVSFISSSVDD--------------------------------LSPTIGVDFKIKLLTVA   58 (211)
Q Consensus        11 ~~~~~~I~v~G~~~~GKssli~~l~~~~~~~--------------------------------~~~~~~~~~~~~~~~~~   58 (211)
                      ....+|.+.+|...=||||||-+|+...-..                                .....|.+.......+.
T Consensus         3 ~k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFs   82 (431)
T COG2895           3 HKSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFS   82 (431)
T ss_pred             cccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecc
Confidence            3456899999999999999999998433100                                00134566766666777


Q ss_pred             CEEEEEEEEeCCChhhhccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCccc
Q 028300           59 GKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVV  138 (211)
Q Consensus        59 ~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v  138 (211)
                      ..+.+|.+-|||||+.|....-.....+|+.|+++|+...- ++..+  ....+..  ...-..+++++||+||.+..+-
T Consensus        83 T~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gv-l~QTr--RHs~I~s--LLGIrhvvvAVNKmDLvdy~e~  157 (431)
T COG2895          83 TEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGV-LEQTR--RHSFIAS--LLGIRHVVVAVNKMDLVDYSEE  157 (431)
T ss_pred             cccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhh-HHHhH--HHHHHHH--HhCCcEEEEEEeeecccccCHH
Confidence            78889999999999999877777788899999999986531 11111  1111111  1233467888999999776554


Q ss_pred             CHHH----HHHHHHHcCC---eEEEeeccCCCcHH
Q 028300          139 SREE----GIALAKEHGS---LFLECSAKTRENVE  166 (211)
Q Consensus       139 ~~~~----~~~~~~~~~~---~~~~~Sa~~~~gv~  166 (211)
                      ..+.    ...|+.++++   .++++||+.|++|-
T Consensus       158 ~F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~  192 (431)
T COG2895         158 VFEAIVADYLAFAAQLGLKDVRFIPISALLGDNVV  192 (431)
T ss_pred             HHHHHHHHHHHHHHHcCCCcceEEechhccCCccc
Confidence            4333    3455666664   59999999999874

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=99.43  E-value=6.7e-12  Score=100.64  Aligned_cols=167  Identities=22%  Similarity=0.260  Sum_probs=120.8

Q ss_pred             CCCCCceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccC
Q 028300            7 QSNSYDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRG   85 (211)
Q Consensus         7 ~~~~~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~   85 (211)
                      .++..++.+...++|+.++|||.|++.+++..+ ..+..+....+....+...+....+.+-|.+-. ....+...- ..
T Consensus       418 ~~~~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~  495 (625)
T KOG1707|consen  418 KKQTDRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AA  495 (625)
T ss_pred             cccccceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ce
Confidence            556778889999999999999999999999888 444455556666556666677778888888754 322222222 67


Q ss_pred             CcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCe-EEEeeccCCCc
Q 028300           86 AQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSL-FLECSAKTREN  164 (211)
Q Consensus        86 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~Sa~~~~g  164 (211)
                      +|++.++||.+++.++......+...    ......|.++|++|+|+.+..+.....-.++..+++++ .+.+|..+...
T Consensus       496 cDv~~~~YDsS~p~sf~~~a~v~~~~----~~~~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~~P~~~S~~~~~s  571 (625)
T KOG1707|consen  496 CDVACLVYDSSNPRSFEYLAEVYNKY----FDLYKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGLPPPIHISSKTLSS  571 (625)
T ss_pred             eeeEEEecccCCchHHHHHHHHHHHh----hhccCCceEEEeeccccchhhhccCCChHHHHHhcCCCCCeeeccCCCCC
Confidence            89999999999999988877632222    23478999999999999765432222225678888875 66777775333


Q ss_pred             HHHHHHHHHHHHHhcc
Q 028300          165 VEQCFEQLALKIMEVP  180 (211)
Q Consensus       165 v~~l~~~i~~~~~~~~  180 (211)
                       .++|..|......-.
T Consensus       572 -~~lf~kL~~~A~~Ph  586 (625)
T KOG1707|consen  572 -NELFIKLATMAQYPH  586 (625)
T ss_pred             -chHHHHHHHhhhCCC
Confidence             889999988766554

>cd01882 BMS1 Bms1

Probab=99.41  E-value=7.1e-12  Score=92.67  Aligned_cols=142  Identities=16%  Similarity=0.238  Sum_probs=85.1

Q ss_pred             CCceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcE
Q 028300           10 SYDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQG   88 (211)
Q Consensus        10 ~~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~   88 (211)
                      .......|+++|++|+|||||++.+..... .......|+ .   .+ ....+..+.++|+||..  .. ....+..+|+
T Consensus        35 ~~~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~-i---~i-~~~~~~~i~~vDtPg~~--~~-~l~~ak~aDv  106 (225)
T cd01882          35 EEPPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP-I---TV-VTGKKRRLTFIECPNDI--NA-MIDIAKVADL  106 (225)
T ss_pred             ccCCCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc-E---EE-EecCCceEEEEeCCchH--HH-HHHHHHhcCE
Confidence            355678899999999999999999986532 212222222 1   11 12245678899999854  22 2334678999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHhhhhccCCCccE-EEEeecCCCCCCcc-cC--HHHHHH-HHHH--cCCeEEEeeccC
Q 028300           89 IILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVK-MLVGNKVDRDSERV-VS--REEGIA-LAKE--HGSLFLECSAKT  161 (211)
Q Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~-viv~nK~Dl~~~~~-v~--~~~~~~-~~~~--~~~~~~~~Sa~~  161 (211)
                      +++++|++........ . +...+..    .+.|. ++|+||.|+.+... ..  ....+. +...  .+.+++.+||++
T Consensus       107 VllviDa~~~~~~~~~-~-i~~~l~~----~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~  180 (225)
T cd01882         107 VLLLIDASFGFEMETF-E-FLNILQV----HGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGIV  180 (225)
T ss_pred             EEEEEecCcCCCHHHH-H-HHHHHHH----cCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeecc
Confidence            9999999864332221 1 3333332    35675 45999999853321 11  111211 2211  246799999998


Q ss_pred             CCcH
Q 028300          162 RENV  165 (211)
Q Consensus       162 ~~gv  165 (211)
                      +..+
T Consensus       181 ~~~~  184 (225)
T cd01882         181 HGRY  184 (225)
T ss_pred             CCCC
Confidence            7443

Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.

>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]

Probab=99.41  E-value=4.9e-12  Score=99.08  Aligned_cols=160  Identities=19%  Similarity=0.234  Sum_probs=112.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhhCC--CCCCC-------------CccceeeEEEEEEECCEEEEEEEEeCCChhhhccch
Q 028300           15 FKILLIGDSGVGKSSLLVSFISSS--VDDLS-------------PTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLT   79 (211)
Q Consensus        15 ~~I~v~G~~~~GKssli~~l~~~~--~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~   79 (211)
                      -+|+|+-+..-|||||+..|+.+.  |....             ...|.+.-.+.-.+...++.+.++|||||.+|....
T Consensus         6 RNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGEV   85 (603)
T COG1217           6 RNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGEV   85 (603)
T ss_pred             ceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccchh
Confidence            479999999999999999998654  32211             233555555555555677899999999999999999


Q ss_pred             hhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccC-HHHHHHHHH-------HcC
Q 028300           80 SSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVS-REEGIALAK-------EHG  151 (211)
Q Consensus        80 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~-~~~~~~~~~-------~~~  151 (211)
                      ...+.=.|++++++|+.+.- ....+..+.+-+     ..+.+-++|+||+|.+..+... .++...++.       +++
T Consensus        86 ERvl~MVDgvlLlVDA~EGp-MPQTrFVlkKAl-----~~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQLd  159 (603)
T COG1217          86 ERVLSMVDGVLLLVDASEGP-MPQTRFVLKKAL-----ALGLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDEQLD  159 (603)
T ss_pred             hhhhhhcceEEEEEEcccCC-CCchhhhHHHHH-----HcCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChhhCC
Confidence            99999999999999998741 222332222222     3466668899999987665322 122333332       356


Q ss_pred             CeEEEeeccCC----------CcHHHHHHHHHHHHHhcc
Q 028300          152 SLFLECSAKTR----------ENVEQCFEQLALKIMEVP  180 (211)
Q Consensus       152 ~~~~~~Sa~~~----------~gv~~l~~~i~~~~~~~~  180 (211)
                      +|++..|+.+|          .++.-+|+.|++.+..-.
T Consensus       160 FPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P~  198 (603)
T COG1217         160 FPIVYASARNGTASLDPEDEADDMAPLFETILDHVPAPK  198 (603)
T ss_pred             CcEEEeeccCceeccCccccccchhHHHHHHHHhCCCCC
Confidence            78999999886          567888888888766544

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=99.39  E-value=5.1e-12  Score=97.62  Aligned_cols=104  Identities=14%  Similarity=0.169  Sum_probs=65.7

Q ss_pred             EEEEEEEeCCChhhhccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccC-
Q 028300           61 RLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVS-  139 (211)
Q Consensus        61 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~-  139 (211)
                      ++.+.|+||+|...-..   .....+|.++++.+....+.+.....    ...      ...-++|+||+|+....... 
T Consensus       148 g~d~viieT~Gv~qs~~---~i~~~aD~vlvv~~p~~gd~iq~~k~----gi~------E~aDIiVVNKaDl~~~~~a~~  214 (332)
T PRK09435        148 GYDVILVETVGVGQSET---AVAGMVDFFLLLQLPGAGDELQGIKK----GIM------ELADLIVINKADGDNKTAARR  214 (332)
T ss_pred             CCCEEEEECCCCccchh---HHHHhCCEEEEEecCCchHHHHHHHh----hhh------hhhheEEeehhcccchhHHHH
Confidence            46789999999653222   24667999999987555544433322    011      11238999999986543211 


Q ss_pred             -HHHHHHHHHH-------cCCeEEEeeccCCCcHHHHHHHHHHHHH
Q 028300          140 -REEGIALAKE-------HGSLFLECSAKTRENVEQCFEQLALKIM  177 (211)
Q Consensus       140 -~~~~~~~~~~-------~~~~~~~~Sa~~~~gv~~l~~~i~~~~~  177 (211)
                       ..+.......       +..|++.+||.++.|++++++.|.+.+.
T Consensus       215 ~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~  260 (332)
T PRK09435        215 AAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRA  260 (332)
T ss_pred             HHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence             1122222221       2357999999999999999999988654

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=99.38  E-value=7.1e-12  Score=91.63  Aligned_cols=56  Identities=25%  Similarity=0.146  Sum_probs=41.2

Q ss_pred             CccEEEEeecCCCCCCcccCHHHHHHHHHHc--CCeEEEeeccCCCcHHHHHHHHHHH
Q 028300          120 DCVKMLVGNKVDRDSERVVSREEGIALAKEH--GSLFLECSAKTRENVEQCFEQLALK  175 (211)
Q Consensus       120 ~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~--~~~~~~~Sa~~~~gv~~l~~~i~~~  175 (211)
                      ..|.++++||+|+.+.............+..  .++++++||+++.|++++|+++.+.
T Consensus       148 ~~a~iiv~NK~Dl~~~~~~~~~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~  205 (207)
T TIGR00073       148 KEADLIVINKADLAEAVGFDVEKMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQ  205 (207)
T ss_pred             hhCCEEEEEHHHccccchhhHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence            4677999999999654332233344444443  3789999999999999999999874

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>PRK09601 GTP-binding protein YchF; Reviewed

Probab=99.38  E-value=2.4e-11  Score=94.64  Aligned_cols=81  Identities=17%  Similarity=0.176  Sum_probs=52.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEE--EEEECCE---------------EEEEEEEeCCChhhh--
Q 028300           15 FKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIK--LLTVAGK---------------RLKLTIWDTAGQERF--   75 (211)
Q Consensus        15 ~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~---------------~~~~~l~D~~g~~~~--   75 (211)
                      ++|+++|.|++|||||+|+|.+... .....++++....  .+.+.+.               ..++.++|+||...-  
T Consensus         3 ~~vgIVG~PNvGKSTLfnaLt~~~~-~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~   81 (364)
T PRK09601          3 LKCGIVGLPNVGKSTLFNALTKAGA-EAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGAS   81 (364)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCC-eecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCC
Confidence            7899999999999999999998773 2222233332222  1222221               135899999994321  


Q ss_pred             -----ccchhhhccCCcEEEEEEECC
Q 028300           76 -----RTLTSSYYRGAQGIILVYDVT   96 (211)
Q Consensus        76 -----~~~~~~~~~~~d~~i~v~d~~   96 (211)
                           .......++++|++++|+|+.
T Consensus        82 ~g~glg~~fL~~i~~aD~li~VVd~f  107 (364)
T PRK09601         82 KGEGLGNQFLANIREVDAIVHVVRCF  107 (364)
T ss_pred             hHHHHHHHHHHHHHhCCEEEEEEeCC
Confidence                 112233467899999999985

>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]

Probab=99.37  E-value=2.4e-11  Score=92.01  Aligned_cols=163  Identities=21%  Similarity=0.211  Sum_probs=98.5

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhhCC----CCC--CCCccceeeEE----EEE-----EECCEEEEEEEEeCCChhhhcc
Q 028300           13 LSFKILLIGDSGVGKSSLLVSFISSS----VDD--LSPTIGVDFKI----KLL-----TVAGKRLKLTIWDTAGQERFRT   77 (211)
Q Consensus        13 ~~~~I~v~G~~~~GKssli~~l~~~~----~~~--~~~~~~~~~~~----~~~-----~~~~~~~~~~l~D~~g~~~~~~   77 (211)
                      ..++|+++|+..||||||.+++....    |+.  ...+.+.+...    ...     .-.++..++.++|+||+...-.
T Consensus         6 ~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasLIR   85 (522)
T KOG0461|consen    6 SNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASLIR   85 (522)
T ss_pred             ceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHHHH
Confidence            34999999999999999999997543    211  11112221111    000     1134567889999999976655


Q ss_pred             chhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccC--HHH-HHHHHHH-----
Q 028300           78 LTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVS--REE-GIALAKE-----  149 (211)
Q Consensus        78 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~--~~~-~~~~~~~-----  149 (211)
                      .......-.|..++|+|+...-.-..+.-.++-.      ..-...++|+||+|...+.+..  .++ .+...+.     
T Consensus        86 tiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~------~~c~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~t~  159 (522)
T KOG0461|consen   86 TIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGE------LLCKKLVVVINKIDVLPENQRASKIEKSAKKVRKTLESTG  159 (522)
T ss_pred             HHHhhhheeeeeeEEEehhcccccccchhhhhhh------hhccceEEEEeccccccchhhhhHHHHHHHHHHHHHHhcC
Confidence            4555555669999999988643222222111111      1233468889999986553221  111 1222221     


Q ss_pred             --cCCeEEEeeccCC----CcHHHHHHHHHHHHHhccc
Q 028300          150 --HGSLFLECSAKTR----ENVEQCFEQLALKIMEVPS  181 (211)
Q Consensus       150 --~~~~~~~~Sa~~~----~gv~~l~~~i~~~~~~~~~  181 (211)
                        -+.|++++|+..|    .++.++.+.+-.++.+-++
T Consensus       160 f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~P~R  197 (522)
T KOG0461|consen  160 FDGNSPIVEVSAADGYFKEEMIQELKEALESRIFEPKR  197 (522)
T ss_pred             cCCCCceeEEecCCCccchhHHHHHHHHHHHhhcCCCc
Confidence              1378999999999    7777777777776665544

>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily

Probab=99.36  E-value=9.5e-12  Score=83.31  Aligned_cols=113  Identities=34%  Similarity=0.401  Sum_probs=78.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhhCCCCC-CC-CccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEEE
Q 028300           15 FKILLIGDSGVGKSSLLVSFISSSVDD-LS-PTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILV   92 (211)
Q Consensus        15 ~~I~v~G~~~~GKssli~~l~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (211)
                      +||+++|..|+|||+|+.++....+.. +. ++.+                           +........+.++.+++|
T Consensus         1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~---------------------------~~~~~~~~~~s~~~~~~v   53 (124)
T smart00010        1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG---------------------------IDVYDPTSYESFDVVLQC   53 (124)
T ss_pred             CEEEEECCCChhHHHHHHHHhcCCccccCceehhh---------------------------hhhccccccCCCCEEEEE
Confidence            589999999999999999998776632 21 2222                           222334456778999999


Q ss_pred             EECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHH
Q 028300           93 YDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVE  166 (211)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~  166 (211)
                      ++.++.++++.+   |...+... ...++|.++++||.|+.+...+...+.        ..++++|++++.++.
T Consensus        54 ~~~~~~~s~~~~---~~~~i~~~-~k~dl~~~~~~nk~dl~~~~~~~~~~~--------~~~~~~s~~~~~~~~  115 (124)
T smart00010       54 WRVDDRDSADNK---NVPEVLVG-NKSDLPILVGGNRDVLEEERQVATEEG--------LEFAETSAKTPEEGE  115 (124)
T ss_pred             EEccCHHHHHHH---hHHHHHhc-CCCCCcEEEEeechhhHhhCcCCHHHH--------HHHHHHhCCCcchhh
Confidence            999999988765   55555433 245689999999999844333333322        235667888888874

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.

>PTZ00416 elongation factor 2; Provisional

Probab=99.36  E-value=3.5e-12  Score=110.20  Aligned_cols=116  Identities=22%  Similarity=0.221  Sum_probs=77.7

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCC---------------CccceeeEE--EEEEEC--------CEEEEEEE
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFISSSVDDLS---------------PTIGVDFKI--KLLTVA--------GKRLKLTI   66 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~---------------~~~~~~~~~--~~~~~~--------~~~~~~~l   66 (211)
                      +.-.+|+++|+.++|||||+++|+...-....               ...+.+...  ....+.        +.+..+.|
T Consensus        17 ~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~l   96 (836)
T PTZ00416         17 DQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINL   96 (836)
T ss_pred             cCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEE
Confidence            44559999999999999999999863210000               011222221  122222        12577999


Q ss_pred             EeCCChhhhccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCC
Q 028300           67 WDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRD  133 (211)
Q Consensus        67 ~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~  133 (211)
                      +||||+.+|.......++.+|++|+|+|+.+.-..... ..|. .+.    ..++|+++++||+|+.
T Consensus        97 iDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~-~~~~-~~~----~~~~p~iv~iNK~D~~  157 (836)
T PTZ00416         97 IDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTE-TVLR-QAL----QERIRPVLFINKVDRA  157 (836)
T ss_pred             EcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHH-HHHH-HHH----HcCCCEEEEEEChhhh
Confidence            99999998877778889999999999998874322222 2132 222    3468999999999985

>PLN00116 translation elongation factor EF-2 subunit; Provisional

Probab=99.36  E-value=3.6e-12  Score=110.26  Aligned_cols=117  Identities=19%  Similarity=0.207  Sum_probs=79.7

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHhhCCCC--C----------CC---CccceeeEE--EEEEE--------------CC
Q 028300           11 YDLSFKILLIGDSGVGKSSLLVSFISSSVD--D----------LS---PTIGVDFKI--KLLTV--------------AG   59 (211)
Q Consensus        11 ~~~~~~I~v~G~~~~GKssli~~l~~~~~~--~----------~~---~~~~~~~~~--~~~~~--------------~~   59 (211)
                      .++-.+|+|+|+.++|||||+++|+...-.  .          ..   ...+.+...  ....+              .+
T Consensus        16 ~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~   95 (843)
T PLN00116         16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDG   95 (843)
T ss_pred             ccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCC
Confidence            345569999999999999999999854310  0          00   011222221  11222              12


Q ss_pred             EEEEEEEEeCCChhhhccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCC
Q 028300           60 KRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRD  133 (211)
Q Consensus        60 ~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~  133 (211)
                      .+..+.|+||||+.+|.......++.+|+.|+|+|+.+.-....... |...     ...++|+++++||+|..
T Consensus        96 ~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~-~~~~-----~~~~~p~i~~iNK~D~~  163 (843)
T PLN00116         96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETV-LRQA-----LGERIRPVLTVNKMDRC  163 (843)
T ss_pred             CceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHH-HHHH-----HHCCCCEEEEEECCccc
Confidence            36788999999999998778888899999999999987533222221 3332     23588999999999985

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=99.36  E-value=4.1e-13  Score=99.63  Aligned_cols=113  Identities=17%  Similarity=0.178  Sum_probs=56.8

Q ss_pred             EEEEEeCCChhhhccchhhhc--------cCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCC
Q 028300           63 KLTIWDTAGQERFRTLTSSYY--------RGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDS  134 (211)
Q Consensus        63 ~~~l~D~~g~~~~~~~~~~~~--------~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~  134 (211)
                      .+.++|||||.++-..+...-        ...-++++++|..-..+......-++..+... ...+.|.+.|+||+|+..
T Consensus        92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~-~~~~lP~vnvlsK~Dl~~  170 (238)
T PF03029_consen   92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIM-LRLELPHVNVLSKIDLLS  170 (238)
T ss_dssp             SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHH-HHHTSEEEEEE--GGGS-
T ss_pred             cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHH-hhCCCCEEEeeeccCccc
Confidence            688999999887654333322        34457888999664333222221122221111 235899999999999966


Q ss_pred             Ccc---c----------------CHHHHHHHHHH---cC-C-eEEEeeccCCCcHHHHHHHHHHHH
Q 028300          135 ERV---V----------------SREEGIALAKE---HG-S-LFLECSAKTRENVEQCFEQLALKI  176 (211)
Q Consensus       135 ~~~---v----------------~~~~~~~~~~~---~~-~-~~~~~Sa~~~~gv~~l~~~i~~~~  176 (211)
                      ...   .                .......++..   ++ . .++.+|+.+++|+++++..|-+++
T Consensus       171 ~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~  236 (238)
T PF03029_consen  171 KYLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN  236 (238)
T ss_dssp             HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred             chhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence            220   0                00111111221   22 3 699999999999999998876654

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>PRK07560 elongation factor EF-2; Reviewed

Probab=99.33  E-value=3.8e-11  Score=102.77  Aligned_cols=116  Identities=22%  Similarity=0.264  Sum_probs=76.9

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhhCCC--CCC----------CC---ccceeeEEE----EEEECCEEEEEEEEeCCCh
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFISSSV--DDL----------SP---TIGVDFKIK----LLTVAGKRLKLTIWDTAGQ   72 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~~~~~--~~~----------~~---~~~~~~~~~----~~~~~~~~~~~~l~D~~g~   72 (211)
                      ++-.+|+++|+.++|||||+.+|+...-  ...          .+   ..+.+....    .+...+.+..+.|+||||+
T Consensus        18 ~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~   97 (731)
T PRK07560         18 EQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGH   97 (731)
T ss_pred             hcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCc
Confidence            3455799999999999999999985331  100          00   011222111    1223445788999999999


Q ss_pred             hhhccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCC
Q 028300           73 ERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRD  133 (211)
Q Consensus        73 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~  133 (211)
                      .+|.......++.+|++|+|+|+...-... ....|....     ..+.|.++++||+|..
T Consensus        98 ~df~~~~~~~l~~~D~avlVvda~~g~~~~-t~~~~~~~~-----~~~~~~iv~iNK~D~~  152 (731)
T PRK07560         98 VDFGGDVTRAMRAVDGAIVVVDAVEGVMPQ-TETVLRQAL-----RERVKPVLFINKVDRL  152 (731)
T ss_pred             cChHHHHHHHHHhcCEEEEEEECCCCCCcc-HHHHHHHHH-----HcCCCeEEEEECchhh
Confidence            988777888899999999999988743222 222133222     2256789999999975

>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.30  E-value=1.6e-11  Score=92.16  Aligned_cols=166  Identities=17%  Similarity=0.143  Sum_probs=108.6

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCC----------------------ccceeeEEEEEEEC------CEEEE
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFISSSVDDLSP----------------------TIGVDFKIKLLTVA------GKRLK   63 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~----------------------~~~~~~~~~~~~~~------~~~~~   63 (211)
                      ..+++|.++|+..-|||||..+|.+--......                      ....+.+...-...      .--..
T Consensus         8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~   87 (415)
T COG5257           8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR   87 (415)
T ss_pred             CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence            568999999999999999999997432111000                      00000111111111      12357


Q ss_pred             EEEEeCCChhhhccchhhhccCCcEEEEEEECCCh----hhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCccc-
Q 028300           64 LTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRR----ETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVV-  138 (211)
Q Consensus        64 ~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v-  138 (211)
                      +.|.|.|||+-.-........-.|+.++|++++++    ++-+.+..  +..+      .-..++|+=||+|+...+.. 
T Consensus        88 VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~A--leIi------gik~iiIvQNKIDlV~~E~Al  159 (415)
T COG5257          88 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMA--LEII------GIKNIIIVQNKIDLVSRERAL  159 (415)
T ss_pred             EEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHH--Hhhh------ccceEEEEecccceecHHHHH
Confidence            88999999987655555555667999999999974    44444432  1222      24467999999999644322 


Q ss_pred             -CHHHHHHHHHH---cCCeEEEeeccCCCcHHHHHHHHHHHHHhccchhcc
Q 028300          139 -SREEGIALAKE---HGSLFLECSAKTRENVEQCFEQLALKIMEVPSLLEE  185 (211)
Q Consensus       139 -~~~~~~~~~~~---~~~~~~~~Sa~~~~gv~~l~~~i~~~~~~~~~~~~~  185 (211)
                       +.+++++|.+-   .++|++++||..+.+++.+++.|.+.+....+....
T Consensus       160 E~y~qIk~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP~rd~~~  210 (415)
T COG5257         160 ENYEQIKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPTPERDLDK  210 (415)
T ss_pred             HHHHHHHHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCCCccCCCC
Confidence             33455566552   468999999999999999999998888766554433

>TIGR00750 lao LAO/AO transport system ATPase

Probab=99.29  E-value=2.7e-11  Score=93.37  Aligned_cols=104  Identities=13%  Similarity=0.125  Sum_probs=63.7

Q ss_pred             EEEEEEEeCCChhhhccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCH
Q 028300           61 RLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSR  140 (211)
Q Consensus        61 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~  140 (211)
                      ++.+.|+||+|.-...   ...+..+|.++++.+....   +++.. +...+      ..+|.++|+||+|+........
T Consensus       126 g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~~~~---~el~~-~~~~l------~~~~~ivv~NK~Dl~~~~~~~~  192 (300)
T TIGR00750       126 GYDVIIVETVGVGQSE---VDIANMADTFVVVTIPGTG---DDLQG-IKAGL------MEIADIYVVNKADGEGATNVTI  192 (300)
T ss_pred             CCCEEEEeCCCCchhh---hHHHHhhceEEEEecCCcc---HHHHH-HHHHH------hhhccEEEEEcccccchhHHHH
Confidence            4678899999843221   2345667888888554433   33332 22111      3567799999999865432111


Q ss_pred             HHH------HHHHH---HcCCeEEEeeccCCCcHHHHHHHHHHHHH
Q 028300          141 EEG------IALAK---EHGSLFLECSAKTRENVEQCFEQLALKIM  177 (211)
Q Consensus       141 ~~~------~~~~~---~~~~~~~~~Sa~~~~gv~~l~~~i~~~~~  177 (211)
                      ...      ..+..   .+..+++.+||+++.|+++++++|.+.+.
T Consensus       193 ~~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~  238 (300)
T TIGR00750       193 ARLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT  238 (300)
T ss_pred             HHHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence            000      11111   12346999999999999999999988644

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another

Probab=99.28  E-value=2.6e-11  Score=85.76  Aligned_cols=63  Identities=25%  Similarity=0.302  Sum_probs=44.1

Q ss_pred             EEEEEeCCChhh----hccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecC
Q 028300           63 KLTIWDTAGQER----FRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKV  130 (211)
Q Consensus        63 ~~~l~D~~g~~~----~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~  130 (211)
                      .+.|+|+||...    ....+..++..+|++|+|.+++...+-.+... +.......    ...+++|.||+
T Consensus       102 ~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~-l~~~~~~~----~~~~i~V~nk~  168 (168)
T PF00350_consen  102 NLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEF-LKQMLDPD----KSRTIFVLNKA  168 (168)
T ss_dssp             SEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHH-HHHHHTTT----CSSEEEEEE-G
T ss_pred             ceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHH-HHHHhcCC----CCeEEEEEcCC
Confidence            478999999543    33557778899999999999998655444444 55555433    34489999985

Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....

>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]

Probab=99.28  E-value=3.2e-11  Score=99.17  Aligned_cols=162  Identities=20%  Similarity=0.162  Sum_probs=106.1

Q ss_pred             CCceeeEEEEEcCCCCcHHHHHHHHhhCCC-----CCCCCccceeeEEEEE--------EEC----CEEEEEEEEeCCCh
Q 028300           10 SYDLSFKILLIGDSGVGKSSLLVSFISSSV-----DDLSPTIGVDFKIKLL--------TVA----GKRLKLTIWDTAGQ   72 (211)
Q Consensus        10 ~~~~~~~I~v~G~~~~GKssli~~l~~~~~-----~~~~~~~~~~~~~~~~--------~~~----~~~~~~~l~D~~g~   72 (211)
                      ..=+..-++|+|+..+|||-|+..+.+...     .......|-++....-        .-.    ..---+.++||||+
T Consensus       471 ~~lRSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpgh  550 (1064)
T KOG1144|consen  471 ENLRSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGH  550 (1064)
T ss_pred             hhcCCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCc
Confidence            344566789999999999999999987553     1122223333332110        000    01124678999999


Q ss_pred             hhhccchhhhccCCcEEEEEEECCC---hhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcc------------
Q 028300           73 ERFRTLTSSYYRGAQGIILVYDVTR---RETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERV------------  137 (211)
Q Consensus        73 ~~~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~------------  137 (211)
                      +.|.++.......+|..|+|+|+-.   +++++.+..     +    ...+.|+||++||+|..-.+.            
T Consensus       551 EsFtnlRsrgsslC~~aIlvvdImhGlepqtiESi~l-----L----R~rktpFivALNKiDRLYgwk~~p~~~i~~~lk  621 (1064)
T KOG1144|consen  551 ESFTNLRSRGSSLCDLAILVVDIMHGLEPQTIESINL-----L----RMRKTPFIVALNKIDRLYGWKSCPNAPIVEALK  621 (1064)
T ss_pred             hhhhhhhhccccccceEEEEeehhccCCcchhHHHHH-----H----HhcCCCeEEeehhhhhhcccccCCCchHHHHHH
Confidence            9999999999999999999999764   555555432     2    245899999999999632110            


Q ss_pred             -----cCH-------HHHHHHHHH-cC-------------CeEEEeeccCCCcHHHHHHHHHHHHHhcc
Q 028300          138 -----VSR-------EEGIALAKE-HG-------------SLFLECSAKTRENVEQCFEQLALKIMEVP  180 (211)
Q Consensus       138 -----v~~-------~~~~~~~~~-~~-------------~~~~~~Sa~~~~gv~~l~~~i~~~~~~~~  180 (211)
                           +..       ..+.+|+.+ ++             +.++++||.+|+||.+|+-+|++......
T Consensus       622 kQ~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~m  690 (1064)
T KOG1144|consen  622 KQKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKTM  690 (1064)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHHHH
Confidence                 000       001122221 11             23689999999999999999988665544

>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=99.28  E-value=1.3e-11  Score=88.40  Aligned_cols=147  Identities=23%  Similarity=0.316  Sum_probs=92.0

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhhCCC--CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhh-----ccchhhhccCC
Q 028300           14 SFKILLIGDSGVGKSSLLVSFISSSV--DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERF-----RTLTSSYYRGA   86 (211)
Q Consensus        14 ~~~I~v~G~~~~GKssli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~-----~~~~~~~~~~~   86 (211)
                      .-||+++|.+|+||||+-..++.+..  +...+....++..-...+- +...+.+||++|++.+     .......+++.
T Consensus         4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~Rfl-Gnl~LnlwDcGgqe~fmen~~~~q~d~iF~nV   82 (295)
T KOG3886|consen    4 KKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFL-GNLVLNLWDCGGQEEFMENYLSSQEDNIFRNV   82 (295)
T ss_pred             cceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhh-hhheeehhccCCcHHHHHHHHhhcchhhheeh
Confidence            45899999999999999777765443  3333333333332222222 2367899999998854     22345688999


Q ss_pred             cEEEEEEECCChhhHHHHHHHHHHHhhhhc-cCCCccEEEEeecCCCCCCcc--cCHHH----HHHHHHHcCCeEEEeec
Q 028300           87 QGIILVYDVTRRETFTNLSDVWAKEVDLYS-TNQDCVKMLVGNKVDRDSERV--VSREE----GIALAKEHGSLFLECSA  159 (211)
Q Consensus        87 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~p~viv~nK~Dl~~~~~--v~~~~----~~~~~~~~~~~~~~~Sa  159 (211)
                      +++++|||++..+-..++.. +..-++... ..+...++....|+|+...+.  ....+    .+.+....+..++.+|.
T Consensus        83 ~vli~vFDves~e~~~D~~~-yqk~Le~ll~~SP~AkiF~l~hKmDLv~~d~r~~if~~r~~~l~~~s~~~~~~~f~Tsi  161 (295)
T KOG3886|consen   83 QVLIYVFDVESREMEKDFHY-YQKCLEALLQNSPEAKIFCLLHKMDLVQEDARELIFQRRKEDLRRLSRPLECKCFPTSI  161 (295)
T ss_pred             eeeeeeeeccchhhhhhHHH-HHHHHHHHHhcCCcceEEEEEeechhcccchHHHHHHHHHHHHHHhcccccccccccch
Confidence            99999999998765555555 555443321 256778899999999964432  22211    22222334455777766


Q ss_pred             cCC
Q 028300          160 KTR  162 (211)
Q Consensus       160 ~~~  162 (211)
                      .+.
T Consensus       162 wDe  164 (295)
T KOG3886|consen  162 WDE  164 (295)
T ss_pred             hhH
Confidence            553

>cd01900 YchF YchF subfamily

Probab=99.27  E-value=6e-11  Score=89.52  Aligned_cols=79  Identities=19%  Similarity=0.174  Sum_probs=49.9

Q ss_pred             EEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEE--EEEECCE---------------EEEEEEEeCCChhhh----
Q 028300           17 ILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIK--LLTVAGK---------------RLKLTIWDTAGQERF----   75 (211)
Q Consensus        17 I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~---------------~~~~~l~D~~g~~~~----   75 (211)
                      |+++|.|+||||||+|+|.+... .....++++....  .+.+.+.               ...+.++|+||.-.-    
T Consensus         1 igivG~PN~GKSTLfn~Lt~~~~-~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~   79 (274)
T cd01900           1 IGIVGLPNVGKSTLFNALTKAGA-EAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKG   79 (274)
T ss_pred             CeEeCCCCCcHHHHHHHHhCCCC-ccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchh
Confidence            58999999999999999998776 2222223222211  1222221               235899999994321    


Q ss_pred             cc---chhhhccCCcEEEEEEECC
Q 028300           76 RT---LTSSYYRGAQGIILVYDVT   96 (211)
Q Consensus        76 ~~---~~~~~~~~~d~~i~v~d~~   96 (211)
                      ..   .....++++|++++|+|+.
T Consensus        80 ~glg~~fL~~i~~~D~li~VV~~f  103 (274)
T cd01900          80 EGLGNKFLSHIREVDAIAHVVRCF  103 (274)
T ss_pred             hHHHHHHHHHHHhCCEEEEEEeCc
Confidence            11   1233467899999999974

YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.

>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=99.27  E-value=9.7e-11  Score=91.50  Aligned_cols=153  Identities=18%  Similarity=0.124  Sum_probs=110.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCCCC--CCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEEEE
Q 028300           16 KILLIGDSGVGKSSLLVSFISSSVD--DLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVY   93 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (211)
                      .|+..|+-.-|||||+..+.+...+  ....-.|++.....+.....+..+.|+|.||++++-......+...|..++|+
T Consensus         2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~i~~miag~~~~d~alLvV   81 (447)
T COG3276           2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDFISNLLAGLGGIDYALLVV   81 (447)
T ss_pred             eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcHHHHHHHHhhhcCCceEEEEE
Confidence            4788899999999999999987652  23334566666666666666678999999999998777777888999999999


Q ss_pred             ECCC---hhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHH---HcCCeEEEeeccCCCcHHH
Q 028300           94 DVTR---RETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAK---EHGSLFLECSAKTRENVEQ  167 (211)
Q Consensus        94 d~~~---~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~---~~~~~~~~~Sa~~~~gv~~  167 (211)
                      ++++   +++.+.+..  +.++.      -...+||+||+|..++..+.. ...+...   ...++++.+|+.+|.||++
T Consensus        82 ~~deGl~~qtgEhL~i--Ldllg------i~~giivltk~D~~d~~r~e~-~i~~Il~~l~l~~~~i~~~s~~~g~GI~~  152 (447)
T COG3276          82 AADEGLMAQTGEHLLI--LDLLG------IKNGIIVLTKADRVDEARIEQ-KIKQILADLSLANAKIFKTSAKTGRGIEE  152 (447)
T ss_pred             eCccCcchhhHHHHHH--HHhcC------CCceEEEEeccccccHHHHHH-HHHHHHhhcccccccccccccccCCCHHH
Confidence            9964   445555442  22222      223499999999865432221 1122222   2346789999999999999


Q ss_pred             HHHHHHHHHH
Q 028300          168 CFEQLALKIM  177 (211)
Q Consensus       168 l~~~i~~~~~  177 (211)
                      +.+.|.+...
T Consensus       153 Lk~~l~~L~~  162 (447)
T COG3276         153 LKNELIDLLE  162 (447)
T ss_pred             HHHHHHHhhh
Confidence            9999998775

>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]

Probab=99.22  E-value=5.2e-11  Score=83.59  Aligned_cols=55  Identities=22%  Similarity=0.113  Sum_probs=43.7

Q ss_pred             cEEEEeecCCCCCCcccCHHHHHHHHHHc--CCeEEEeeccCCCcHHHHHHHHHHHH
Q 028300          122 VKMLVGNKVDRDSERVVSREEGIALAKEH--GSLFLECSAKTRENVEQCFEQLALKI  176 (211)
Q Consensus       122 p~viv~nK~Dl~~~~~v~~~~~~~~~~~~--~~~~~~~Sa~~~~gv~~l~~~i~~~~  176 (211)
                      .=++|+||.|+.+.-..+.+....-+++.  +.+++++|+++|.|++++++|+....
T Consensus       144 aDllVInK~DLa~~v~~dlevm~~da~~~np~~~ii~~n~ktg~G~~~~~~~i~~~~  200 (202)
T COG0378         144 ADLLVINKTDLAPYVGADLEVMARDAKEVNPEAPIIFTNLKTGEGLDEWLRFIEPQA  200 (202)
T ss_pred             eeEEEEehHHhHHHhCccHHHHHHHHHHhCCCCCEEEEeCCCCcCHHHHHHHHHhhc
Confidence            33899999999877666666666555553  47899999999999999999987654

>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []

Probab=99.21  E-value=2.7e-10  Score=86.62  Aligned_cols=141  Identities=18%  Similarity=0.262  Sum_probs=75.5

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhhCCCCCCC-----------CccceeeEEEEEEECCEEEEEEEEeCCChhh-------
Q 028300           13 LSFKILLIGDSGVGKSSLLVSFISSSVDDLS-----------PTIGVDFKIKLLTVAGKRLKLTIWDTAGQER-------   74 (211)
Q Consensus        13 ~~~~I~v~G~~~~GKssli~~l~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-------   74 (211)
                      -.++|.|+|.+|+|||||||.|++.......           .+.........+.-.+..+.+.++||||..+       
T Consensus         3 ~~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~   82 (281)
T PF00735_consen    3 FNFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDC   82 (281)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHH
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhh
Confidence            4689999999999999999999987652111           1112233333344467788999999999211       


Q ss_pred             -----------hccch---------hhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCC
Q 028300           75 -----------FRTLT---------SSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDS  134 (211)
Q Consensus        75 -----------~~~~~---------~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~  134 (211)
                                 |....         ...=...|++||.++.+.. .+..+.-..++.+     ...+++|-|+.|+|...
T Consensus        83 ~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~-~L~~~Di~~mk~L-----s~~vNvIPvIaKaD~lt  156 (281)
T PF00735_consen   83 WEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGH-GLKPLDIEFMKRL-----SKRVNVIPVIAKADTLT  156 (281)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSS-SS-HHHHHHHHHH-----TTTSEEEEEESTGGGS-
T ss_pred             hHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCc-cchHHHHHHHHHh-----cccccEEeEEecccccC
Confidence                       11000         1111456999999998753 1222221133333     34678899999999865


Q ss_pred             CcccC--HHHHHHHHHHcCCeEEEeec
Q 028300          135 ERVVS--REEGIALAKEHGSLFLECSA  159 (211)
Q Consensus       135 ~~~v~--~~~~~~~~~~~~~~~~~~Sa  159 (211)
                      ..+..  ...+.......++.+|....
T Consensus       157 ~~el~~~k~~i~~~l~~~~I~~f~f~~  183 (281)
T PF00735_consen  157 PEELQAFKQRIREDLEENNIKIFDFPE  183 (281)
T ss_dssp             HHHHHHHHHHHHHHHHHTT--S-----
T ss_pred             HHHHHHHHHHHHHHHHHcCceeecccc
Confidence            44332  12234444556776655433

Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.

>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains

Probab=99.21  E-value=2.2e-10  Score=94.35  Aligned_cols=121  Identities=17%  Similarity=0.216  Sum_probs=71.6

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeE-EEEEEECCEEEEEEEEeCCChhhhc-------cc---
Q 028300           11 YDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFK-IKLLTVAGKRLKLTIWDTAGQERFR-------TL---   78 (211)
Q Consensus        11 ~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~-------~~---   78 (211)
                      -+..++|+++|.+|+||||++|.+++... .......+++.. ......  .+..+.++||||..+..       ..   
T Consensus       115 LdfslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~i--dG~~L~VIDTPGL~dt~~dq~~neeILk~  192 (763)
T TIGR00993       115 LDFSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLV--QGVKIRVIDTPGLKSSASDQSKNEKILSS  192 (763)
T ss_pred             cCcceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEE--CCceEEEEECCCCCccccchHHHHHHHHH
Confidence            35568999999999999999999998764 222222233322 112222  34678999999955321       11   


Q ss_pred             hhhhcc--CCcEEEEEEECCChhh-HHHHHHHHHHHhh-hhccCCCccEEEEeecCCCCCC
Q 028300           79 TSSYYR--GAQGIILVYDVTRRET-FTNLSDVWAKEVD-LYSTNQDCVKMLVGNKVDRDSE  135 (211)
Q Consensus        79 ~~~~~~--~~d~~i~v~d~~~~~s-~~~~~~~~~~~~~-~~~~~~~~p~viv~nK~Dl~~~  135 (211)
                      ...++.  .+|++|+|..++.... .++. . ++..+. .+...--..+|||+|+.|..++
T Consensus       193 Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~-~-aLr~Iq~lFG~~Iwk~tIVVFThgD~lpp  251 (763)
T TIGR00993       193 VKKFIKKNPPDIVLYVDRLDMQTRDSNDL-P-LLRTITDVLGPSIWFNAIVTLTHAASAPP  251 (763)
T ss_pred             HHHHHhcCCCCEEEEEEeCCCccccHHHH-H-HHHHHHHHhCHHhHcCEEEEEeCCccCCC
Confidence            122333  5799999998763322 1222 2 223322 2211223467999999998653

The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.

>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=99.20  E-value=1e-09  Score=84.62  Aligned_cols=121  Identities=17%  Similarity=0.184  Sum_probs=81.3

Q ss_pred             CEEEEEEEEeCCChhhhccchhhhccCCcEEEEEEECCChhh----------HHHHHHHHHHHhhhhccCCCccEEEEee
Q 028300           59 GKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRET----------FTNLSDVWAKEVDLYSTNQDCVKMLVGN  128 (211)
Q Consensus        59 ~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s----------~~~~~~~~~~~~~~~~~~~~~p~viv~n  128 (211)
                      -....+.++|.+|+...+.-|.+++.+++++|+|+++++-+.          +.+....+...+... --.+.++++++|
T Consensus       192 ~k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~-~F~~tsiiLFLN  270 (354)
T KOG0082|consen  192 IKGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNK-WFANTSIILFLN  270 (354)
T ss_pred             eCCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCc-ccccCcEEEEee
Confidence            345788999999999888899999999999999999886332          222233222232222 335789999999


Q ss_pred             cCCCCCCc--------------cc-CHHHHHHHHHH----------cCCeEEEeeccCCCcHHHHHHHHHHHHHhcc
Q 028300          129 KVDRDSER--------------VV-SREEGIALAKE----------HGSLFLECSAKTRENVEQCFEQLALKIMEVP  180 (211)
Q Consensus       129 K~Dl~~~~--------------~v-~~~~~~~~~~~----------~~~~~~~~Sa~~~~gv~~l~~~i~~~~~~~~  180 (211)
                      |.|+-+++              .. ..+++..+...          ..+-+..+.|.+..+|+.+|..+.+.+....
T Consensus       271 K~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~d~Ii~~n  347 (354)
T KOG0082|consen  271 KKDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVTDTIIQNN  347 (354)
T ss_pred             cHHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHHHHHHHHH
Confidence            99983321              11 22333333221          1233566788889999999999988776653

>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.20  E-value=1.7e-10  Score=88.22  Aligned_cols=127  Identities=20%  Similarity=0.241  Sum_probs=89.2

Q ss_pred             CCCCCCCCCceeeEEEEEcCCCCcHHHHHHHHhhCCC--CCCCCccceeeEEEEEEECCEEE------------------
Q 028300            3 SSSGQSNSYDLSFKILLIGDSGVGKSSLLVSFISSSV--DDLSPTIGVDFKIKLLTVAGKRL------------------   62 (211)
Q Consensus         3 ~~~~~~~~~~~~~~I~v~G~~~~GKssli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~------------------   62 (211)
                      |+.-....++.+..|.++|+-..||||||+.|+..++  ....+.+.+++....+.-+....                  
T Consensus        47 sp~l~d~dfd~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~  126 (532)
T KOG1954|consen   47 SPALEDPDFDAKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLN  126 (532)
T ss_pred             cccccCcccccCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhh
Confidence            4444567788899999999999999999999999998  34555565655554443322111                  


Q ss_pred             ---------------------EEEEEeCCCh-----------hhhccchhhhccCCcEEEEEEECCChhhHHHHHHHHHH
Q 028300           63 ---------------------KLTIWDTAGQ-----------ERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAK  110 (211)
Q Consensus        63 ---------------------~~~l~D~~g~-----------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~  110 (211)
                                           .++++|+||.           -.|......++..+|.++++||+-..+--.++.. .+.
T Consensus       127 ~FG~aflnRf~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~-vi~  205 (532)
T KOG1954|consen  127 KFGNAFLNRFMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKR-VID  205 (532)
T ss_pred             hhHHHHHHHHHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHH-HHH
Confidence                                 5889999992           2345567889999999999999776554444444 344


Q ss_pred             HhhhhccCCCccEEEEeecCCCCC
Q 028300          111 EVDLYSTNQDCVKMLVGNKVDRDS  134 (211)
Q Consensus       111 ~~~~~~~~~~~p~viv~nK~Dl~~  134 (211)
                      .++.+    .=.+-||+||+|..+
T Consensus       206 aLkG~----EdkiRVVLNKADqVd  225 (532)
T KOG1954|consen  206 ALKGH----EDKIRVVLNKADQVD  225 (532)
T ss_pred             HhhCC----cceeEEEeccccccC
Confidence            44322    334678889999744

>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]

Probab=99.19  E-value=1e-10  Score=98.28  Aligned_cols=118  Identities=18%  Similarity=0.217  Sum_probs=88.3

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHhhCCC--CC---------------CCCccceeeEEEEEEECCE-EEEEEEEeCCCh
Q 028300           11 YDLSFKILLIGDSGVGKSSLLVSFISSSV--DD---------------LSPTIGVDFKIKLLTVAGK-RLKLTIWDTAGQ   72 (211)
Q Consensus        11 ~~~~~~I~v~G~~~~GKssli~~l~~~~~--~~---------------~~~~~~~~~~~~~~~~~~~-~~~~~l~D~~g~   72 (211)
                      .++--+|+++|+.++|||||..+++...-  ..               .....|.+..+........ ++.++|+|||||
T Consensus         7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGH   86 (697)
T COG0480           7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGH   86 (697)
T ss_pred             cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCc
Confidence            55677999999999999999999974321  11               1123356666666666566 599999999999


Q ss_pred             hhhccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCC
Q 028300           73 ERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDS  134 (211)
Q Consensus        73 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~  134 (211)
                      -+|.......++-+|+.++|+|+.+.-....-.. |++..     ..++|.++++||+|...
T Consensus        87 VDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv-~rqa~-----~~~vp~i~fiNKmDR~~  142 (697)
T COG0480          87 VDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETV-WRQAD-----KYGVPRILFVNKMDRLG  142 (697)
T ss_pred             cccHHHHHHHHHhhcceEEEEECCCCeeecHHHH-HHHHh-----hcCCCeEEEEECccccc
Confidence            9999989999999999999999987432222222 55443     45899999999999743

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=99.15  E-value=3.1e-11  Score=88.77  Aligned_cols=147  Identities=21%  Similarity=0.251  Sum_probs=82.9

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhhCCC-----------CCCCCccc----------------eeeEEEEEEECC-----
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFISSSV-----------DDLSPTIG----------------VDFKIKLLTVAG-----   59 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~~~~~-----------~~~~~~~~----------------~~~~~~~~~~~~-----   59 (211)
                      .+.++|+|.|+||+|||||++.|...-.           ++..|..|                ...+.+.+--.+     
T Consensus        27 g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGl  106 (266)
T PF03308_consen   27 GRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGL  106 (266)
T ss_dssp             T-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHH
T ss_pred             CCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCc
Confidence            3568999999999999999999862110           11111111                122222222111     


Q ss_pred             -------------EEEEEEEEeCCC--hhhhccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEE
Q 028300           60 -------------KRLKLTIWDTAG--QERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKM  124 (211)
Q Consensus        60 -------------~~~~~~l~D~~g--~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~v  124 (211)
                                   .++.+.|++|.|  +.+.     ....-+|.+++|......+.++-+..-+++.          +=+
T Consensus       107 s~~t~~~v~ll~aaG~D~IiiETVGvGQsE~-----~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEi----------aDi  171 (266)
T PF03308_consen  107 SRATRDAVRLLDAAGFDVIIIETVGVGQSEV-----DIADMADTVVLVLVPGLGDEIQAIKAGIMEI----------ADI  171 (266)
T ss_dssp             HHHHHHHHHHHHHTT-SEEEEEEESSSTHHH-----HHHTTSSEEEEEEESSTCCCCCTB-TTHHHH-----------SE
T ss_pred             cHhHHHHHHHHHHcCCCEEEEeCCCCCccHH-----HHHHhcCeEEEEecCCCccHHHHHhhhhhhh----------ccE
Confidence                         134677888876  3332     2345589999999987766555544423333          228


Q ss_pred             EEeecCCCCCCcccCHHHHHHHHHH-------cCCeEEEeeccCCCcHHHHHHHHHH
Q 028300          125 LVGNKVDRDSERVVSREEGIALAKE-------HGSLFLECSAKTRENVEQCFEQLAL  174 (211)
Q Consensus       125 iv~nK~Dl~~~~~v~~~~~~~~~~~-------~~~~~~~~Sa~~~~gv~~l~~~i~~  174 (211)
                      +|+||+|....+... .+.......       +..|++.+||.++.|++++++.|.+
T Consensus       172 ~vVNKaD~~gA~~~~-~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~  227 (266)
T PF03308_consen  172 FVVNKADRPGADRTV-RDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDE  227 (266)
T ss_dssp             EEEE--SHHHHHHHH-HHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHH
T ss_pred             EEEeCCChHHHHHHH-HHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHH
Confidence            999999964332221 122222221       2347999999999999999988776

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]

Probab=99.13  E-value=8.5e-10  Score=85.04  Aligned_cols=84  Identities=23%  Similarity=0.277  Sum_probs=53.0

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhhCCC--CCCC-----CccceeeEEEE--------EE--ECCEEEEEEEEeCCChh---
Q 028300           14 SFKILLIGDSGVGKSSLLVSFISSSV--DDLS-----PTIGVDFKIKL--------LT--VAGKRLKLTIWDTAGQE---   73 (211)
Q Consensus        14 ~~~I~v~G~~~~GKssli~~l~~~~~--~~~~-----~~~~~~~~~~~--------~~--~~~~~~~~~l~D~~g~~---   73 (211)
                      .++++|+|.||+|||||+|.+.....  .+|.     |..|..+....        +.  -......+.|+|++|.-   
T Consensus         2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA   81 (372)
T COG0012           2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA   81 (372)
T ss_pred             CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence            57899999999999999999997664  1221     11121111100        00  01235678999999821   


Q ss_pred             ----hhccchhhhccCCcEEEEEEECCC
Q 028300           74 ----RFRTLTSSYYRGAQGIILVYDVTR   97 (211)
Q Consensus        74 ----~~~~~~~~~~~~~d~~i~v~d~~~   97 (211)
                          ...+....-++.+|+++.|+++.+
T Consensus        82 s~GeGLGNkFL~~IRevdaI~hVVr~f~  109 (372)
T COG0012          82 SKGEGLGNKFLDNIREVDAIIHVVRCFG  109 (372)
T ss_pred             ccCCCcchHHHHhhhhcCeEEEEEEecC
Confidence                222334445688999999999773

>smart00053 DYNc Dynamin, GTPase

Probab=99.12  E-value=1.1e-09  Score=81.17  Aligned_cols=69  Identities=25%  Similarity=0.223  Sum_probs=44.2

Q ss_pred             EEEEEEeCCChhh-------------hccchhhhccC-CcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEe
Q 028300           62 LKLTIWDTAGQER-------------FRTLTSSYYRG-AQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVG  127 (211)
Q Consensus        62 ~~~~l~D~~g~~~-------------~~~~~~~~~~~-~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~  127 (211)
                      ..+.|+|+||...             ...+...++++ .+++++|+|+...-.-.+... +.+.+.    ..+.|+++|+
T Consensus       125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~-ia~~ld----~~~~rti~Vi  199 (240)
T smart00053      125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALK-LAKEVD----PQGERTIGVI  199 (240)
T ss_pred             CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHH-HHHHHH----HcCCcEEEEE
Confidence            4688999999632             12234556674 468999998875322222222 333333    4588999999


Q ss_pred             ecCCCCCC
Q 028300          128 NKVDRDSE  135 (211)
Q Consensus       128 nK~Dl~~~  135 (211)
                      ||.|..++
T Consensus       200 TK~D~~~~  207 (240)
T smart00053      200 TKLDLMDE  207 (240)
T ss_pred             ECCCCCCc
Confidence            99998653

Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.

>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]

Probab=99.12  E-value=4.9e-09  Score=76.46  Aligned_cols=90  Identities=21%  Similarity=0.168  Sum_probs=63.4

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhh-------ccchhhhcc
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERF-------RTLTSSYYR   84 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~-------~~~~~~~~~   84 (211)
                      .-..||+++|.|.+|||||+..+..... ....-..++...+...+...+..+++.|+||.-+-       ........+
T Consensus        60 sGdaRValIGfPSVGKStlLs~iT~T~S-eaA~yeFTTLtcIpGvi~y~ga~IQllDLPGIieGAsqgkGRGRQviavAr  138 (364)
T KOG1486|consen   60 SGDARVALIGFPSVGKSTLLSKITSTHS-EAASYEFTTLTCIPGVIHYNGANIQLLDLPGIIEGASQGKGRGRQVIAVAR  138 (364)
T ss_pred             cCCeEEEEecCCCccHHHHHHHhhcchh-hhhceeeeEEEeecceEEecCceEEEecCcccccccccCCCCCceEEEEee
Confidence            3456999999999999999999886543 22233344555555555556678899999994322       223455678


Q ss_pred             CCcEEEEEEECCChhhHH
Q 028300           85 GAQGIILVYDVTRRETFT  102 (211)
Q Consensus        85 ~~d~~i~v~d~~~~~s~~  102 (211)
                      .+|.++.|.|++..+.-.
T Consensus       139 taDlilMvLDatk~e~qr  156 (364)
T KOG1486|consen  139 TADLILMVLDATKSEDQR  156 (364)
T ss_pred             cccEEEEEecCCcchhHH
Confidence            899999999999765443

>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]

Probab=99.12  E-value=1.1e-09  Score=81.44  Aligned_cols=142  Identities=17%  Similarity=0.125  Sum_probs=98.3

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHhh-------CC---C-----CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhh
Q 028300           11 YDLSFKILLIGDSGVGKSSLLVSFIS-------SS---V-----DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERF   75 (211)
Q Consensus        11 ~~~~~~I~v~G~~~~GKssli~~l~~-------~~---~-----~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~   75 (211)
                      ....++|+.+|+.+-|||||..++..       ..   +     .......|.+.....+.++.....+..+|+|||.+|
T Consensus         9 ~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaDY   88 (394)
T COG0050           9 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHADY   88 (394)
T ss_pred             CCCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHHH
Confidence            34678999999999999999887751       11   1     111124567777777777777788889999999999


Q ss_pred             ccchhhhccCCcEEEEEEECCC---hhhHHHHHHHHHHHhhhhccCCCc-cEEEEeecCCCCCCccc---CHHHHHHHHH
Q 028300           76 RTLTSSYYRGAQGIILVYDVTR---RETFTNLSDVWAKEVDLYSTNQDC-VKMLVGNKVDRDSERVV---SREEGIALAK  148 (211)
Q Consensus        76 ~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~~-p~viv~nK~Dl~~~~~v---~~~~~~~~~~  148 (211)
                      -........++|+.|+|+++++   |++-+.+.-     .    ..-+. .+++++||+|+.+..+.   -..+.+.+..
T Consensus        89 vKNMItgAaqmDgAILVVsA~dGpmPqTrEHiLl-----a----rqvGvp~ivvflnK~Dmvdd~ellelVemEvreLLs  159 (394)
T COG0050          89 VKNMITGAAQMDGAILVVAATDGPMPQTREHILL-----A----RQVGVPYIVVFLNKVDMVDDEELLELVEMEVRELLS  159 (394)
T ss_pred             HHHHhhhHHhcCccEEEEEcCCCCCCcchhhhhh-----h----hhcCCcEEEEEEecccccCcHHHHHHHHHHHHHHHH
Confidence            7666677789999999999998   444444431     1    12245 56778899999764332   2344566677


Q ss_pred             HcCC-----eEEEeeccC
Q 028300          149 EHGS-----LFLECSAKT  161 (211)
Q Consensus       149 ~~~~-----~~~~~Sa~~  161 (211)
                      .+++     |++.-|++.
T Consensus       160 ~y~f~gd~~Pii~gSal~  177 (394)
T COG0050         160 EYGFPGDDTPIIRGSALK  177 (394)
T ss_pred             HcCCCCCCcceeechhhh
Confidence            7765     466666654

>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

Probab=99.11  E-value=3.2e-10  Score=84.68  Aligned_cols=155  Identities=19%  Similarity=0.194  Sum_probs=92.2

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHhhCCC-----------CCCCCccc----------------eeeEEEEEEE------
Q 028300           11 YDLSFKILLIGDSGVGKSSLLVSFISSSV-----------DDLSPTIG----------------VDFKIKLLTV------   57 (211)
Q Consensus        11 ~~~~~~I~v~G~~~~GKssli~~l~~~~~-----------~~~~~~~~----------------~~~~~~~~~~------   57 (211)
                      ..+...|+|.|.||+|||||+..|...-.           ++..|..|                .....+...-      
T Consensus        48 tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~lGG  127 (323)
T COG1703          48 TGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGTLGG  127 (323)
T ss_pred             CCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCccchh
Confidence            45667999999999999999999862211           11111111                0111111100      


Q ss_pred             ------------CCEEEEEEEEeCCChhhhccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEE
Q 028300           58 ------------AGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKML  125 (211)
Q Consensus        58 ------------~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~vi  125 (211)
                                  +-.++.+.|++|.|--..+.   ....-+|.+++|.-..-.+.++.+..-++++-+          ++
T Consensus       128 lS~at~~~i~~ldAaG~DvIIVETVGvGQsev---~I~~~aDt~~~v~~pg~GD~~Q~iK~GimEiaD----------i~  194 (323)
T COG1703         128 LSRATREAIKLLDAAGYDVIIVETVGVGQSEV---DIANMADTFLVVMIPGAGDDLQGIKAGIMEIAD----------II  194 (323)
T ss_pred             hhHHHHHHHHHHHhcCCCEEEEEecCCCcchh---HHhhhcceEEEEecCCCCcHHHHHHhhhhhhhh----------ee
Confidence                        11234677888887432221   234458999999888777777766653443333          89


Q ss_pred             EeecCCCCCCcccCHHHH--HHHHH----H--cCCeEEEeeccCCCcHHHHHHHHHHHHHh
Q 028300          126 VGNKVDRDSERVVSREEG--IALAK----E--HGSLFLECSAKTRENVEQCFEQLALKIME  178 (211)
Q Consensus       126 v~nK~Dl~~~~~v~~~~~--~~~~~----~--~~~~~~~~Sa~~~~gv~~l~~~i~~~~~~  178 (211)
                      |+||.|.........+..  ..+..    .  +.-|++.+||..++|++++++.|.+...-
T Consensus       195 vINKaD~~~A~~a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~~  255 (323)
T COG1703         195 VINKADRKGAEKAARELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRKF  255 (323)
T ss_pred             eEeccChhhHHHHHHHHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHHH
Confidence            999999643322111111  11111    1  23469999999999999999998775443

>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.07  E-value=1.1e-09  Score=79.34  Aligned_cols=172  Identities=20%  Similarity=0.243  Sum_probs=107.5

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhh-cc--chhhhccCCcEE
Q 028300           13 LSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERF-RT--LTSSYYRGAQGI   89 (211)
Q Consensus        13 ~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~-~~--~~~~~~~~~d~~   89 (211)
                      .+.+|+++|...+||||+-+..+....+........+.....-.+.+.-+.+.+||+||+..+ ..  -....++++.++
T Consensus        26 ~kp~ilLMG~rRsGKsSI~KVVFhkMsPneTlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gAL  105 (347)
T KOG3887|consen   26 MKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGAL  105 (347)
T ss_pred             CCceEEEEeecccCcchhhheeeeccCCCceeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCeE
Confidence            446799999999999999998776655443332222222111233344577999999997654 22  246678999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcc-cCH------HHHHHHHHH----cCCeEEEee
Q 028300           90 ILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERV-VSR------EEGIALAKE----HGSLFLECS  158 (211)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~-v~~------~~~~~~~~~----~~~~~~~~S  158 (211)
                      ++|+|+.+. ..+.+...-...-+.+...+++-+-+.+.|.|...++- +..      .....++..    ..+.|+-+|
T Consensus       106 ifvIDaQdd-y~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~d~gle~v~vsf~LTS  184 (347)
T KOG3887|consen  106 IFVIDAQDD-YMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIETQRDIHQRTNDELADAGLEKVQVSFYLTS  184 (347)
T ss_pred             EEEEechHH-HHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhhhhhHHHHHHHhhHHHHhhhhccceEEEEEee
Confidence            999998874 23333332222234455578889999999999754321 111      111111111    223467677


Q ss_pred             ccCCCcHHHHHHHHHHHHHhccchhccc
Q 028300          159 AKTRENVEQCFEQLALKIMEVPSLLEEG  186 (211)
Q Consensus       159 a~~~~gv~~l~~~i~~~~~~~~~~~~~~  186 (211)
                      ..+. .+-+.|..+++.+..+-+..+..
T Consensus       185 IyDH-SIfEAFSkvVQkLipqLptLEnl  211 (347)
T KOG3887|consen  185 IYDH-SIFEAFSKVVQKLIPQLPTLENL  211 (347)
T ss_pred             ecch-HHHHHHHHHHHHHhhhchhHHHH
Confidence            6654 57888999999888776665544

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=99.07  E-value=3.8e-10  Score=85.25  Aligned_cols=56  Identities=25%  Similarity=0.202  Sum_probs=40.5

Q ss_pred             CccEEEEeecCCCCCCcccCHHHHHHHHHH--cCCeEEEeeccCCCcHHHHHHHHHHH
Q 028300          120 DCVKMLVGNKVDRDSERVVSREEGIALAKE--HGSLFLECSAKTRENVEQCFEQLALK  175 (211)
Q Consensus       120 ~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~--~~~~~~~~Sa~~~~gv~~l~~~i~~~  175 (211)
                      ..+-++|+||+|+.+......+......+.  ..++++.+|++++.|++++.+||.++
T Consensus       230 ~~ADIVVLNKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~  287 (290)
T PRK10463        230 AAASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ  287 (290)
T ss_pred             hcCcEEEEEhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence            456699999999965322223333333443  25789999999999999999999774

>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]

Probab=99.06  E-value=1.2e-09  Score=85.41  Aligned_cols=118  Identities=15%  Similarity=0.201  Sum_probs=85.1

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhhCC--C-------------------CCCCCccceeeEEEEEEECCEEEEEEEEeCC
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFISSS--V-------------------DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTA   70 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~~~~--~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~   70 (211)
                      .+.-..+|+-+|.+|||||..+|+--.  .                   -......|....+-.+.++..+..++|.|||
T Consensus        10 ~rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTP   89 (528)
T COG4108          10 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTP   89 (528)
T ss_pred             hhhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCC
Confidence            344567999999999999999986211  0                   0011244677777788888889999999999


Q ss_pred             ChhhhccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCC
Q 028300           71 GQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSE  135 (211)
Q Consensus        71 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~  135 (211)
                      ||++|..-.-..+.-+|..+.|+|+...  ++.-...+....+    ..++|++-++||.|....
T Consensus        90 GHeDFSEDTYRtLtAvDsAvMVIDaAKG--iE~qT~KLfeVcr----lR~iPI~TFiNKlDR~~r  148 (528)
T COG4108          90 GHEDFSEDTYRTLTAVDSAVMVIDAAKG--IEPQTLKLFEVCR----LRDIPIFTFINKLDREGR  148 (528)
T ss_pred             CccccchhHHHHHHhhheeeEEEecccC--ccHHHHHHHHHHh----hcCCceEEEeeccccccC
Confidence            9999977666677889999999998763  1111111333333    459999999999997543

>KOG0410 consensus Predicted GTP binding protein [General function prediction only]

Probab=99.06  E-value=3.4e-10  Score=85.20  Aligned_cols=155  Identities=17%  Similarity=0.168  Sum_probs=95.5

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCC--CccceeeEEEEEEECCEEEEEEEEeCCCh---------hhhccc
Q 028300           11 YDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLS--PTIGVDFKIKLLTVAGKRLKLTIWDTAGQ---------ERFRTL   78 (211)
Q Consensus        11 ~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~l~D~~g~---------~~~~~~   78 (211)
                      .+...-|+++|-.|+|||||+++|..... +...  .|..++..  ...+.. +..+.+.||.|.         ..|+. 
T Consensus       175 ~~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h--~a~Lps-g~~vlltDTvGFisdLP~~LvaAF~A-  250 (410)
T KOG0410|consen  175 GESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLH--SAHLPS-GNFVLLTDTVGFISDLPIQLVAAFQA-  250 (410)
T ss_pred             cCCCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhh--hccCCC-CcEEEEeechhhhhhCcHHHHHHHHH-
Confidence            34556799999999999999999995543 2222  22223322  223322 234667799883         22333 


Q ss_pred             hhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCc----cEEEEeecCCCCCCcccCHHHHHHHHHHcCCeE
Q 028300           79 TSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDC----VKMLVGNKVDRDSERVVSREEGIALAKEHGSLF  154 (211)
Q Consensus        79 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~----p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~  154 (211)
                      ....+..+|.++.|.|++.|+.-..... ....+... .-+..    .++=|-||+|..+.. +..       ..++  .
T Consensus       251 TLeeVaeadlllHvvDiShP~ae~q~e~-Vl~vL~~i-gv~~~pkl~~mieVdnkiD~e~~~-~e~-------E~n~--~  318 (410)
T KOG0410|consen  251 TLEEVAEADLLLHVVDISHPNAEEQRET-VLHVLNQI-GVPSEPKLQNMIEVDNKIDYEEDE-VEE-------EKNL--D  318 (410)
T ss_pred             HHHHHhhcceEEEEeecCCccHHHHHHH-HHHHHHhc-CCCcHHHHhHHHhhcccccccccc-Ccc-------ccCC--c
Confidence            2334578999999999999976555444 33333322 11122    345566777764322 111       1122  6


Q ss_pred             EEeeccCCCcHHHHHHHHHHHHHhccc
Q 028300          155 LECSAKTRENVEQCFEQLALKIMEVPS  181 (211)
Q Consensus       155 ~~~Sa~~~~gv~~l~~~i~~~~~~~~~  181 (211)
                      +.+|+.+|.|++++.+.+-+.+.....
T Consensus       319 v~isaltgdgl~el~~a~~~kv~~~t~  345 (410)
T KOG0410|consen  319 VGISALTGDGLEELLKAEETKVASETT  345 (410)
T ss_pred             cccccccCccHHHHHHHHHHHhhhhhe
Confidence            789999999999999988887766543

>cd01859 MJ1464 MJ1464

Probab=99.04  E-value=8e-10  Score=77.21  Aligned_cols=95  Identities=17%  Similarity=0.109  Sum_probs=65.0

Q ss_pred             ccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEE
Q 028300           76 RTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFL  155 (211)
Q Consensus        76 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~  155 (211)
                      +.+.+..++++|++++|+|++++....+. . +...+    ...++|+++|+||+|+.+....  .....+....+.+++
T Consensus         3 ~~~~~~i~~~aD~vl~V~D~~~~~~~~~~-~-l~~~~----~~~~~p~iiv~NK~Dl~~~~~~--~~~~~~~~~~~~~~~   74 (156)
T cd01859           3 KRLVRRIIKESDVVLEVLDARDPELTRSR-K-LERYV----LELGKKLLIVLNKADLVPKEVL--EKWKSIKESEGIPVV   74 (156)
T ss_pred             HHHHHHHHhhCCEEEEEeeCCCCcccCCH-H-HHHHH----HhCCCcEEEEEEhHHhCCHHHH--HHHHHHHHhCCCcEE
Confidence            44567788899999999999876432221 1 22222    2236899999999998543221  111123334567899


Q ss_pred             EeeccCCCcHHHHHHHHHHHHHh
Q 028300          156 ECSAKTRENVEQCFEQLALKIME  178 (211)
Q Consensus       156 ~~Sa~~~~gv~~l~~~i~~~~~~  178 (211)
                      .+||+++.|++++++.+.+.+..
T Consensus        75 ~iSa~~~~gi~~L~~~l~~~~~~   97 (156)
T cd01859          75 YVSAKERLGTKILRRTIKELAKI   97 (156)
T ss_pred             EEEccccccHHHHHHHHHHHHhh
Confidence            99999999999999999887643

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []

Probab=99.03  E-value=5.6e-09  Score=83.52  Aligned_cols=116  Identities=16%  Similarity=0.149  Sum_probs=79.7

Q ss_pred             EEEEEEEEeCCChhhhccchhhhccCCcEEEEEEECCCh----------hhHHHHHHHHHHHhhhhccCCCccEEEEeec
Q 028300           60 KRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRR----------ETFTNLSDVWAKEVDLYSTNQDCVKMLVGNK  129 (211)
Q Consensus        60 ~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK  129 (211)
                      ....+.++|++|+...+.-|..++.+++++|||+++++-          ..+.+....|....... .-.+.|++|++||
T Consensus       234 ~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~-~~~~~~iil~lnK  312 (389)
T PF00503_consen  234 GSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNP-WFKNTPIILFLNK  312 (389)
T ss_dssp             TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSG-GGTTSEEEEEEE-
T ss_pred             cccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCc-ccccCceEEeeec
Confidence            456789999999988888999999999999999997742          23566666455555433 3458999999999


Q ss_pred             CCCCC------C----------cc--cCHHHHHHHHHH------------cCCeEEEeeccCCCcHHHHHHHHHHHH
Q 028300          130 VDRDS------E----------RV--VSREEGIALAKE------------HGSLFLECSAKTRENVEQCFEQLALKI  176 (211)
Q Consensus       130 ~Dl~~------~----------~~--v~~~~~~~~~~~------------~~~~~~~~Sa~~~~gv~~l~~~i~~~~  176 (211)
                      .|+..      .          ..  -..+.+..+...            ..+.+..++|.+...+..+|+.+.+.+
T Consensus       313 ~D~f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v~~~v~~~i  389 (389)
T PF00503_consen  313 IDLFEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKVFNAVKDII  389 (389)
T ss_dssp             HHHHHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHHHHHhcCcC
Confidence            99621      0          01  123444444332            112366788888889999998887643

G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....

>PRK00098 GTPase RsgA; Reviewed

Probab=99.01  E-value=1.7e-09  Score=83.29  Aligned_cols=88  Identities=24%  Similarity=0.213  Sum_probs=65.2

Q ss_pred             hhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeecc
Q 028300           81 SYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAK  160 (211)
Q Consensus        81 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~  160 (211)
                      ..+.++|.+++|+|+.+++........|+..+.    ..++|+++|+||+|+.+... ............+.+++.+||+
T Consensus        76 ~iaaniD~vllV~d~~~p~~~~~~idr~L~~~~----~~~ip~iIVlNK~DL~~~~~-~~~~~~~~~~~~g~~v~~vSA~  150 (298)
T PRK00098         76 LIAANVDQAVLVFAAKEPDFSTDLLDRFLVLAE----ANGIKPIIVLNKIDLLDDLE-EARELLALYRAIGYDVLELSAK  150 (298)
T ss_pred             ceeecCCEEEEEEECCCCCCCHHHHHHHHHHHH----HCCCCEEEEEEhHHcCCCHH-HHHHHHHHHHHCCCeEEEEeCC
Confidence            346899999999999988766665554665554    24789999999999953322 1223334455678899999999


Q ss_pred             CCCcHHHHHHHHH
Q 028300          161 TRENVEQCFEQLA  173 (211)
Q Consensus       161 ~~~gv~~l~~~i~  173 (211)
                      ++.|++++++.+.
T Consensus       151 ~g~gi~~L~~~l~  163 (298)
T PRK00098        151 EGEGLDELKPLLA  163 (298)
T ss_pred             CCccHHHHHhhcc
Confidence            9999999987764

>cd01858 NGP_1 NGP-1

Probab=99.00  E-value=1.4e-09  Score=76.06  Aligned_cols=56  Identities=25%  Similarity=0.367  Sum_probs=44.9

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCC
Q 028300           13 LSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAG   71 (211)
Q Consensus        13 ~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g   71 (211)
                      ..++|+++|.||+|||||+|+|.+.......+.+|++.....+....   .+.++||||
T Consensus       101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~~~~~~~~---~~~liDtPG  156 (157)
T cd01858         101 KQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQYITLMK---RIYLIDCPG  156 (157)
T ss_pred             cceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeEEEEEcCC---CEEEEECcC
Confidence            46789999999999999999999887767777788777655554432   367899998

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=99.00  E-value=2.5e-09  Score=85.62  Aligned_cols=163  Identities=22%  Similarity=0.386  Sum_probs=117.0

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEEE
Q 028300           13 LSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILV   92 (211)
Q Consensus        13 ~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (211)
                      .++|++|+|..++|||+|+++++.+.+.....+.+..+. ..+..++.+..+.+.|.+|...     ..+...+|++|+|
T Consensus        29 pelk~givg~~~sgktalvhr~ltgty~~~e~~e~~~~k-kE~vv~gqs~lLlirdeg~~~~-----aQft~wvdavIfv  102 (749)
T KOG0705|consen   29 PELKLGIVGTSQSGKTALVHRYLTGTYTQDESPEGGRFK-KEVVVDGQSHLLLIRDEGGHPD-----AQFCQWVDAVVFV  102 (749)
T ss_pred             chhheeeeecccCCceeeeeeeccceeccccCCcCccce-eeEEeeccceEeeeecccCCch-----hhhhhhccceEEE
Confidence            568999999999999999999999988554444444433 3445567778888888888432     2344568999999


Q ss_pred             EECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCC--CCcccCHHHHHHHHHH-cCCeEEEeeccCCCcHHHHH
Q 028300           93 YDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRD--SERVVSREEGIALAKE-HGSLFLECSAKTRENVEQCF  169 (211)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~--~~~~v~~~~~~~~~~~-~~~~~~~~Sa~~~~gv~~l~  169 (211)
                      |.+.+.+++..+..+... +..+.....+|+++++++.-..  ..+.+......++..+ ....||++.+..|.++...|
T Consensus       103 f~~~d~~s~q~v~~l~~~-l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~krcsy~et~atyGlnv~rvf  181 (749)
T KOG0705|consen  103 FSVEDEQSFQAVQALAHE-MSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQLSAQMKRCSYYETCATYGLNVERVF  181 (749)
T ss_pred             EEeccccCHHHHHHHHhh-cccccccccchHHhhcCcchhhcccccccchHHHHHHHHhcCccceeecchhhhhhHHHHH
Confidence            999999999998873333 3333236678888888876542  2333344444444444 44679999999999999999


Q ss_pred             HHHHHHHHhccch
Q 028300          170 EQLALKIMEVPSL  182 (211)
Q Consensus       170 ~~i~~~~~~~~~~  182 (211)
                      ..+...+...+..
T Consensus       182 ~~~~~k~i~~~~~  194 (749)
T KOG0705|consen  182 QEVAQKIVQLRKY  194 (749)
T ss_pred             HHHHHHHHHHHhh
Confidence            9988877666433

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=99.00  E-value=1.2e-09  Score=74.98  Aligned_cols=54  Identities=28%  Similarity=0.384  Sum_probs=43.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCCh
Q 028300           16 KILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQ   72 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~   72 (211)
                      +++++|.+|+|||||+|++.+..........+.+.....+.++.   .+.+|||||.
T Consensus        85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~DtpG~  138 (141)
T cd01857          85 TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQTIFLTP---TITLCDCPGL  138 (141)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEEEEeCC---CEEEEECCCc
Confidence            89999999999999999999887755666666666666666544   5799999995

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>cd01855 YqeH YqeH

Probab=98.99  E-value=3.6e-09  Score=76.33  Aligned_cols=94  Identities=19%  Similarity=0.061  Sum_probs=65.2

Q ss_pred             hccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHH-----HH
Q 028300           75 FRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALA-----KE  149 (211)
Q Consensus        75 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~-----~~  149 (211)
                      +..++..+++.+|++++|+|++++..-      |...+..  ...++|+++|+||+|+.+... .......+.     ..
T Consensus        24 ~~~~l~~~~~~ad~il~VvD~~~~~~~------~~~~l~~--~~~~~~~ilV~NK~Dl~~~~~-~~~~~~~~~~~~~~~~   94 (190)
T cd01855          24 ILNLLSSISPKKALVVHVVDIFDFPGS------LIPRLRL--FGGNNPVILVGNKIDLLPKDK-NLVRIKNWLRAKAAAG   94 (190)
T ss_pred             HHHHHHhcccCCcEEEEEEECccCCCc------cchhHHH--hcCCCcEEEEEEchhcCCCCC-CHHHHHHHHHHHHHhh
Confidence            567788889999999999999875421      2222211  234689999999999864332 222222222     22


Q ss_pred             cCC---eEEEeeccCCCcHHHHHHHHHHHHH
Q 028300          150 HGS---LFLECSAKTRENVEQCFEQLALKIM  177 (211)
Q Consensus       150 ~~~---~~~~~Sa~~~~gv~~l~~~i~~~~~  177 (211)
                      .+.   +++.+||+++.|+++++++|.+.+.
T Consensus        95 ~~~~~~~i~~vSA~~~~gi~eL~~~l~~~l~  125 (190)
T cd01855          95 LGLKPKDVILISAKKGWGVEELINAIKKLAK  125 (190)
T ss_pred             cCCCcccEEEEECCCCCCHHHHHHHHHHHhh
Confidence            332   5899999999999999999988764

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=98.99  E-value=1.5e-09  Score=76.76  Aligned_cols=57  Identities=28%  Similarity=0.386  Sum_probs=46.9

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCC
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAG   71 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g   71 (211)
                      ...++|+++|.||+|||||+|++.+.......+.+|++.....+.+.   ..+.++|+||
T Consensus       115 ~~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~~~~~~~---~~~~l~DtPG  171 (172)
T cd04178         115 KTSITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSMQEVHLD---KKVKLLDSPG  171 (172)
T ss_pred             ccCcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcceEEEEeC---CCEEEEECcC
Confidence            44589999999999999999999988776677778888776666553   2578999998

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]

Probab=98.99  E-value=3.8e-09  Score=86.39  Aligned_cols=115  Identities=26%  Similarity=0.342  Sum_probs=82.3

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCC----------C------ccceeeEE--EEEEE---CCEEEEEEEEeCC
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFISSSVDDLS----------P------TIGVDFKI--KLLTV---AGKRLKLTIWDTA   70 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~----------~------~~~~~~~~--~~~~~---~~~~~~~~l~D~~   70 (211)
                      ....+|+++|+-+.|||+|+.-|.....+...          .      ..|.....  .+...   .+..+-+++.|||
T Consensus       126 ~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTP  205 (971)
T KOG0468|consen  126 ERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDTP  205 (971)
T ss_pred             ceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecCC
Confidence            56789999999999999999998866542211          0      11222222  22222   3467889999999


Q ss_pred             ChhhhccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCC
Q 028300           71 GQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDR  132 (211)
Q Consensus        71 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl  132 (211)
                      ||-.|.......++.+|++++++|+.+.-.+..-+.     ++ +....+.|+++|+||.|.
T Consensus       206 GHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~-----ik-haiq~~~~i~vviNKiDR  261 (971)
T KOG0468|consen  206 GHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTERI-----IK-HAIQNRLPIVVVINKVDR  261 (971)
T ss_pred             CcccchHHHHHHhhhcceEEEEEEcccCceeeHHHH-----HH-HHHhccCcEEEEEehhHH
Confidence            999998888889999999999999988654433322     22 223568999999999995

>PRK12289 GTPase RsgA; Reviewed

Probab=98.98  E-value=3e-09  Score=83.23  Aligned_cols=92  Identities=23%  Similarity=0.150  Sum_probs=65.6

Q ss_pred             cchhhhccCCcEEEEEEECCChh-hHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEE
Q 028300           77 TLTSSYYRGAQGIILVYDVTRRE-TFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFL  155 (211)
Q Consensus        77 ~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~  155 (211)
                      .+.+..+.++|.+++|+|+.++. ....+.. |+....    ..++|++||+||+|+......  .........++.+++
T Consensus        81 ~L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR-~L~~a~----~~~ip~ILVlNK~DLv~~~~~--~~~~~~~~~~g~~v~  153 (352)
T PRK12289         81 ELDRPPVANADQILLVFALAEPPLDPWQLSR-FLVKAE----STGLEIVLCLNKADLVSPTEQ--QQWQDRLQQWGYQPL  153 (352)
T ss_pred             ceechhhhcCCEEEEEEECCCCCCCHHHHHH-HHHHHH----HCCCCEEEEEEchhcCChHHH--HHHHHHHHhcCCeEE
Confidence            34455689999999999999875 3333333 544432    358999999999999643222  222333456788999


Q ss_pred             EeeccCCCcHHHHHHHHHHH
Q 028300          156 ECSAKTRENVEQCFEQLALK  175 (211)
Q Consensus       156 ~~Sa~~~~gv~~l~~~i~~~  175 (211)
                      .+||.++.|++++++.+...
T Consensus       154 ~iSA~tg~GI~eL~~~L~~k  173 (352)
T PRK12289        154 FISVETGIGLEALLEQLRNK  173 (352)
T ss_pred             EEEcCCCCCHHHHhhhhccc
Confidence            99999999999999887653

>cd01854 YjeQ_engC YjeQ/EngC

Probab=98.95  E-value=4.8e-09  Score=80.38  Aligned_cols=89  Identities=18%  Similarity=0.118  Sum_probs=66.1

Q ss_pred             hhhhccCCcEEEEEEECCChh-hHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEe
Q 028300           79 TSSYYRGAQGIILVYDVTRRE-TFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLEC  157 (211)
Q Consensus        79 ~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~  157 (211)
                      ....+.++|.+++|+|+.++. ++..+.. |+..+..    .++|+++|+||+|+.+...  ...........+.+++.+
T Consensus        72 ~~~i~anvD~vllV~d~~~p~~s~~~ldr-~L~~~~~----~~ip~iIVlNK~DL~~~~~--~~~~~~~~~~~g~~v~~v  144 (287)
T cd01854          72 EQVIAANVDQLVIVVSLNEPFFNPRLLDR-YLVAAEA----AGIEPVIVLTKADLLDDEE--EELELVEALALGYPVLAV  144 (287)
T ss_pred             ceeEEEeCCEEEEEEEcCCCCCCHHHHHH-HHHHHHH----cCCCEEEEEEHHHCCChHH--HHHHHHHHHhCCCeEEEE
Confidence            344588999999999999887 6666665 6655543    4789999999999965421  122233344577899999


Q ss_pred             eccCCCcHHHHHHHHHH
Q 028300          158 SAKTRENVEQCFEQLAL  174 (211)
Q Consensus       158 Sa~~~~gv~~l~~~i~~  174 (211)
                      |++++.|+++++..+..
T Consensus       145 SA~~g~gi~~L~~~L~~  161 (287)
T cd01854         145 SAKTGEGLDELREYLKG  161 (287)
T ss_pred             ECCCCccHHHHHhhhcc
Confidence            99999999998887653

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>PRK12288 GTPase RsgA; Reviewed

Probab=98.93  E-value=1e-08  Score=80.25  Aligned_cols=88  Identities=17%  Similarity=0.153  Sum_probs=66.2

Q ss_pred             hccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCccc-CHHHHHHHHHHcCCeEEEeecc
Q 028300           82 YYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVV-SREEGIALAKEHGSLFLECSAK  160 (211)
Q Consensus        82 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v-~~~~~~~~~~~~~~~~~~~Sa~  160 (211)
                      ...++|.+++|++.+...++..+.. |+....    ..++|.+||+||+|+.+.... ............+.+++++||+
T Consensus       117 iaANvD~vlIV~s~~p~~s~~~Ldr-~L~~a~----~~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~  191 (347)
T PRK12288        117 IAANIDQIVIVSAVLPELSLNIIDR-YLVACE----TLGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSH  191 (347)
T ss_pred             EEEEccEEEEEEeCCCCCCHHHHHH-HHHHHH----hcCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCC
Confidence            4578999999999988878887777 655443    357899999999999654321 1122233445678899999999


Q ss_pred             CCCcHHHHHHHHHH
Q 028300          161 TRENVEQCFEQLAL  174 (211)
Q Consensus       161 ~~~gv~~l~~~i~~  174 (211)
                      ++.|++++++.|..
T Consensus       192 tg~GideL~~~L~~  205 (347)
T PRK12288        192 TGEGLEELEAALTG  205 (347)
T ss_pred             CCcCHHHHHHHHhh
Confidence            99999999988865

>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.88  E-value=7.2e-08  Score=74.61  Aligned_cols=145  Identities=19%  Similarity=0.279  Sum_probs=85.6

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhhCCCCCC--------CCccceeeEEEEEEE--CCEEEEEEEEeCCChhh-------
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFISSSVDDL--------SPTIGVDFKIKLLTV--AGKRLKLTIWDTAGQER-------   74 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~~~~~~~~--------~~~~~~~~~~~~~~~--~~~~~~~~l~D~~g~~~-------   74 (211)
                      ...+++.++|..|.|||||||.|+...+...        .+............+  ++-.+.++++||||.-+       
T Consensus        19 G~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~   98 (366)
T KOG2655|consen   19 GFDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNC   98 (366)
T ss_pred             CCceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCccccccccc
Confidence            4568999999999999999999998865221        111122223333333  45667889999999211       


Q ss_pred             -----------hc-------cchhhhc--cCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCC
Q 028300           75 -----------FR-------TLTSSYY--RGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDS  134 (211)
Q Consensus        75 -----------~~-------~~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~  134 (211)
                                 |+       .+.+.-+  ..+++++|.+..+.. .+..+.-..+..+     ...+.++-|+.|+|...
T Consensus        99 w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~gh-gL~p~Di~~Mk~l-----~~~vNiIPVI~KaD~lT  172 (366)
T KOG2655|consen   99 WRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGH-GLKPLDIEFMKKL-----SKKVNLIPVIAKADTLT  172 (366)
T ss_pred             chhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCC-CCcHhhHHHHHHH-----hccccccceeeccccCC
Confidence                       11       0111122  267899999997753 1222222122222     34667788888999865


Q ss_pred             CcccCH--HHHHHHHHHcCCeEEEeeccCC
Q 028300          135 ERVVSR--EEGIALAKEHGSLFLECSAKTR  162 (211)
Q Consensus       135 ~~~v~~--~~~~~~~~~~~~~~~~~Sa~~~  162 (211)
                      ..++..  ..+.+....+++++|....-..
T Consensus       173 ~~El~~~K~~I~~~i~~~nI~vf~fp~~~~  202 (366)
T KOG2655|consen  173 KDELNQFKKRIRQDIEEHNIKVFDFPTDES  202 (366)
T ss_pred             HHHHHHHHHHHHHHHHHcCcceecCCCCcc
Confidence            544322  3344455567777766655544

>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]

Probab=98.86  E-value=5.9e-08  Score=74.64  Aligned_cols=139  Identities=19%  Similarity=0.257  Sum_probs=82.5

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhhCCCC-C----------CCCccceeeEEEEEEECCEEEEEEEEeCCChhhh---cc
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFISSSVD-D----------LSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERF---RT   77 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~~~~~~-~----------~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~---~~   77 (211)
                      ...++|.++|+.|+|||||+|.|++.... .          ..++.........+.-++-.+.++++||||.-++   ..
T Consensus        21 Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~  100 (373)
T COG5019          21 GIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSK  100 (373)
T ss_pred             CCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccccc
Confidence            56899999999999999999999987431 1          1122223333333344566788999999993211   11


Q ss_pred             chh-------------------------hhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCC
Q 028300           78 LTS-------------------------SYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDR  132 (211)
Q Consensus        78 ~~~-------------------------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl  132 (211)
                      .|.                         ..=..+++++|.+..+.. .+..+.-..+..+     ...+-+|=|+.|+|.
T Consensus       101 ~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh-~l~~~DIe~Mk~l-----s~~vNlIPVI~KaD~  174 (373)
T COG5019         101 CWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGH-GLKPLDIEAMKRL-----SKRVNLIPVIAKADT  174 (373)
T ss_pred             cHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCC-CCCHHHHHHHHHH-----hcccCeeeeeecccc
Confidence            111                         111356899999987753 2333322233332     235566777889998


Q ss_pred             CCCcccC--HHHHHHHHHHcCCeEEE
Q 028300          133 DSERVVS--REEGIALAKEHGSLFLE  156 (211)
Q Consensus       133 ~~~~~v~--~~~~~~~~~~~~~~~~~  156 (211)
                      ....+..  .+.+.+....+++++|.
T Consensus       175 lT~~El~~~K~~I~~~i~~~nI~vf~  200 (373)
T COG5019         175 LTDDELAEFKERIREDLEQYNIPVFD  200 (373)
T ss_pred             CCHHHHHHHHHHHHHHHHHhCCceeC
Confidence            6544332  23344455567777764

>cd01856 YlqF YlqF

Probab=98.85  E-value=1e-08  Score=72.72  Aligned_cols=58  Identities=22%  Similarity=0.374  Sum_probs=46.4

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCCh
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQ   72 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~   72 (211)
                      ...++++++|.+|+|||||++++.+..+....+..+++.....+.++   ..+.+|||||.
T Consensus       113 ~~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~~~~~~~~---~~~~~iDtpG~  170 (171)
T cd01856         113 PRGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKGIQWIKIS---PGIYLLDTPGI  170 (171)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEeeeEEEEec---CCEEEEECCCC
Confidence            45579999999999999999999988775666666777776666554   45789999994

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A

Probab=98.83  E-value=2.8e-07  Score=72.43  Aligned_cols=155  Identities=17%  Similarity=0.199  Sum_probs=93.6

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhhCCC---------------CCCCCccce----------eeEEEEEEE-CCEEEEEEE
Q 028300           13 LSFKILLIGDSGVGKSSLLVSFISSSV---------------DDLSPTIGV----------DFKIKLLTV-AGKRLKLTI   66 (211)
Q Consensus        13 ~~~~I~v~G~~~~GKssli~~l~~~~~---------------~~~~~~~~~----------~~~~~~~~~-~~~~~~~~l   66 (211)
                      -.+=|+|+||..+||||||++|.....               ...++..|.          -.....+.+ ++-.+++++
T Consensus        16 GdIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kVRL   95 (492)
T PF09547_consen   16 GDIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKVRL   95 (492)
T ss_pred             CceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEEEE
Confidence            356789999999999999999973221               111111121          122234444 456789999


Q ss_pred             EeCCCh--------hhh------ccch---------------hhhcc-CC-cEEEEEEECC----ChhhHHHHHHHHHHH
Q 028300           67 WDTAGQ--------ERF------RTLT---------------SSYYR-GA-QGIILVYDVT----RRETFTNLSDVWAKE  111 (211)
Q Consensus        67 ~D~~g~--------~~~------~~~~---------------~~~~~-~~-d~~i~v~d~~----~~~s~~~~~~~~~~~  111 (211)
                      +|+.|.        .+.      .+-|               +..+. ++ =++++.-|.+    .++.+.++.......
T Consensus        96 iDCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~E  175 (492)
T PF09547_consen   96 IDCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVIEE  175 (492)
T ss_pred             EeecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHHHH
Confidence            999881        100      0001               11111 12 2455555543    256677777767777


Q ss_pred             hhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCC--CcHHHHHHHHH
Q 028300          112 VDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTR--ENVEQCFEQLA  173 (211)
Q Consensus       112 ~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~--~gv~~l~~~i~  173 (211)
                      ++..    ++|++|++|-.+-.  ..-......++..+++++++.+++.+-  ..+..+++.++
T Consensus       176 Lk~i----gKPFvillNs~~P~--s~et~~L~~eL~ekY~vpVlpvnc~~l~~~DI~~Il~~vL  233 (492)
T PF09547_consen  176 LKEI----GKPFVILLNSTKPY--SEETQELAEELEEKYDVPVLPVNCEQLREEDITRILEEVL  233 (492)
T ss_pred             HHHh----CCCEEEEEeCCCCC--CHHHHHHHHHHHHHhCCcEEEeehHHcCHHHHHHHHHHHH
Confidence            7765    99999999998732  223445566777789999988888653  45555554443

It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.

>cd01859 MJ1464 MJ1464

Probab=98.83  E-value=1.4e-08  Score=70.92  Aligned_cols=56  Identities=27%  Similarity=0.377  Sum_probs=43.3

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCC
Q 028300           13 LSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAG   71 (211)
Q Consensus        13 ~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g   71 (211)
                      ...+++++|.+++|||||++++.+.....+.++.+++.....+..+.   .+.+|||||
T Consensus       100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~DtpG  155 (156)
T cd01859         100 KEGKVGVVGYPNVGKSSIINALKGRHSASTSPSPGYTKGEQLVKITS---KIYLLDTPG  155 (156)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeeeeeEEEEcCC---CEEEEECcC
Confidence            45789999999999999999999776666677777765543333322   689999998

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=98.83  E-value=1.2e-08  Score=77.81  Aligned_cols=58  Identities=22%  Similarity=0.394  Sum_probs=47.2

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCCh
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQ   72 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~   72 (211)
                      ...++|+++|.||+|||||+|+|.+.........+|++.....+.+..   .+.++||||.
T Consensus       116 ~~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~~~---~~~l~DtPG~  173 (276)
T TIGR03596       116 NRPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQWIKLSD---GLELLDTPGI  173 (276)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecceEEEEeCC---CEEEEECCCc
Confidence            457899999999999999999999887666667778777766666532   4789999996

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=98.83  E-value=2.8e-08  Score=76.49  Aligned_cols=156  Identities=18%  Similarity=0.224  Sum_probs=94.7

Q ss_pred             CCCCCceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCC------------------------CccceeeEEEEEEEC----
Q 028300            7 QSNSYDLSFKILLIGDSGVGKSSLLVSFISSSVDDLS------------------------PTIGVDFKIKLLTVA----   58 (211)
Q Consensus         7 ~~~~~~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~------------------------~~~~~~~~~~~~~~~----   58 (211)
                      |....-.++|++++|.-.+|||||+..|..++.++..                        ...|.+.....+.+.    
T Consensus       160 Pd~QqfievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~t  239 (591)
T KOG1143|consen  160 PDSQQFIEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMT  239 (591)
T ss_pred             CCcccceEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhccc
Confidence            4445567899999999999999999988765542211                        111221111111111    


Q ss_pred             ------CEEEEEEEEeCCChhhhccchhhhcc--CCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecC
Q 028300           59 ------GKRLKLTIWDTAGQERFRTLTSSYYR--GAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKV  130 (211)
Q Consensus        59 ------~~~~~~~l~D~~g~~~~~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~  130 (211)
                            ....-++|+|++|+..|.......+.  ..|...+|+++...-.... +. -+-++    ...++|++++++|+
T Consensus       240 aEEi~e~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tT-rE-HLgl~----~AL~iPfFvlvtK~  313 (591)
T KOG1143|consen  240 AEEIVEKSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTT-RE-HLGLI----AALNIPFFVLVTKM  313 (591)
T ss_pred             HHHHHhhhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCcccc-HH-HHHHH----HHhCCCeEEEEEee
Confidence                  12346889999999998765544444  3488889998876422111 11 11122    24589999999999


Q ss_pred             CCCCCcc------------------------cCHHHHHHHHHHc----CCeEEEeeccCCCcHHHH
Q 028300          131 DRDSERV------------------------VSREEGIALAKEH----GSLFLECSAKTRENVEQC  168 (211)
Q Consensus       131 Dl~~~~~------------------------v~~~~~~~~~~~~----~~~~~~~Sa~~~~gv~~l  168 (211)
                      |+.....                        ...+++...+.+.    -.|+|.+|+..|+|++-+
T Consensus       314 Dl~~~~~~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll  379 (591)
T KOG1143|consen  314 DLVDRQGLKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLL  379 (591)
T ss_pred             ccccchhHHHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHH
Confidence            9854411                        1122232222222    247999999999998643

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=98.82  E-value=1.8e-08  Score=77.29  Aligned_cols=58  Identities=22%  Similarity=0.361  Sum_probs=47.7

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCCh
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQ   72 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~   72 (211)
                      ...++|+++|.||+|||||+|+|.+.......+.+|++.....+....   .+.++||||.
T Consensus       119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~~~---~~~l~DtPGi  176 (287)
T PRK09563        119 PRAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQWIKLGK---GLELLDTPGI  176 (287)
T ss_pred             cCceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEEEEEEeCC---cEEEEECCCc
Confidence            456899999999999999999999887766677888887766655533   5789999995

>COG5258 GTPBP1 GTPase [General function prediction only]

Probab=98.79  E-value=6.2e-08  Score=74.87  Aligned_cols=164  Identities=17%  Similarity=0.158  Sum_probs=97.0

Q ss_pred             CCCceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCC-Cc--------------cceeeEEEEEEECC--------------
Q 028300            9 NSYDLSFKILLIGDSGVGKSSLLVSFISSSVDDLS-PT--------------IGVDFKIKLLTVAG--------------   59 (211)
Q Consensus         9 ~~~~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~-~~--------------~~~~~~~~~~~~~~--------------   59 (211)
                      ...+..+.|+++|+.+.|||||+-.|.-+..+.-. .+              ...+.....+-+++              
T Consensus       112 ~~~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE  191 (527)
T COG5258         112 EEAPEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAE  191 (527)
T ss_pred             cCCCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHH
Confidence            34677899999999999999999988755442111 00              01111111222211              


Q ss_pred             -------EEEEEEEEeCCChhhhcc-chhh-hccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecC
Q 028300           60 -------KRLKLTIWDTAGQERFRT-LTSS-YYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKV  130 (211)
Q Consensus        60 -------~~~~~~l~D~~g~~~~~~-~~~~-~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~  130 (211)
                             .+..+.|+|+.||+.|-. ..+. +-.+.|..++++.+++.-+--     -.+.+... .....|++++.||+
T Consensus       192 ~~~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~-----tkEHLgi~-~a~~lPviVvvTK~  265 (527)
T COG5258         192 KAAVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKM-----TKEHLGIA-LAMELPVIVVVTKI  265 (527)
T ss_pred             HhHhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchh-----hhHhhhhh-hhhcCCEEEEEEec
Confidence                   123578999999998743 3333 345779999999999852211     12222221 34589999999999


Q ss_pred             CCCCCcccC--HHHHHHH----------------------HHHc---CCeEEEeeccCCCcHHHHHHHHHHHHHhc
Q 028300          131 DRDSERVVS--REEGIAL----------------------AKEH---GSLFLECSAKTRENVEQCFEQLALKIMEV  179 (211)
Q Consensus       131 Dl~~~~~v~--~~~~~~~----------------------~~~~---~~~~~~~Sa~~~~gv~~l~~~i~~~~~~~  179 (211)
                      |+.+.+...  .+++...                      +.+.   =+|+|.+|+.+|.|++- +..+...+...
T Consensus       266 D~~~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~Gldl-L~e~f~~Lp~r  340 (527)
T COG5258         266 DMVPDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDL-LDEFFLLLPKR  340 (527)
T ss_pred             ccCcHHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHH-HHHHHHhCCcc
Confidence            986543211  0111111                      1111   25799999999999864 44444444433

>KOG2486 consensus Predicted GTPase [General function prediction only]

Probab=98.79  E-value=7.6e-09  Score=76.51  Aligned_cols=156  Identities=17%  Similarity=0.095  Sum_probs=91.9

Q ss_pred             CCceeeEEEEEcCCCCcHHHHHHHHhhCCC--CCCCCccceeeEEEEEEECCEEEEEEEEeCCCh----------hhhcc
Q 028300           10 SYDLSFKILLIGDSGVGKSSLLVSFISSSV--DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQ----------ERFRT   77 (211)
Q Consensus        10 ~~~~~~~I~v~G~~~~GKssli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~----------~~~~~   77 (211)
                      ..+...+++++|.+++|||+|+|.+.....  ....+..|.+.....+..   .-.+.++|.||.          .++..
T Consensus       132 Pk~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v---~~~~~~vDlPG~~~a~y~~~~~~d~~~  208 (320)
T KOG2486|consen  132 PKDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHV---GKSWYEVDLPGYGRAGYGFELPADWDK  208 (320)
T ss_pred             CCCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeec---cceEEEEecCCcccccCCccCcchHhH
Confidence            356778999999999999999999987664  333345565555444433   346788899991          12233


Q ss_pred             chhhhccCC---cEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcc----cCHHHHHHHHH--
Q 028300           78 LTSSYYRGA---QGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERV----VSREEGIALAK--  148 (211)
Q Consensus        78 ~~~~~~~~~---d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~----v~~~~~~~~~~--  148 (211)
                      +...++-+-   =-+++.+|++-+-  .......+..+.    ..++|+.+|+||+|......    .....++....  
T Consensus       209 ~t~~Y~leR~nLv~~FLLvd~sv~i--~~~D~~~i~~~g----e~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l  282 (320)
T KOG2486|consen  209 FTKSYLLERENLVRVFLLVDASVPI--QPTDNPEIAWLG----ENNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGL  282 (320)
T ss_pred             hHHHHHHhhhhhheeeeeeeccCCC--CCCChHHHHHHh----hcCCCeEEeeehhhhhhhccccccCccccceeehhhc
Confidence            333333222   2345566655431  111111333333    45999999999999742211    01111111111  


Q ss_pred             -----HcCCeEEEeeccCCCcHHHHHHHHHH
Q 028300          149 -----EHGSLFLECSAKTRENVEQCFEQLAL  174 (211)
Q Consensus       149 -----~~~~~~~~~Sa~~~~gv~~l~~~i~~  174 (211)
                           ....|.+.+|+.++.|++++.-.|.+
T Consensus       283 ~~~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q  313 (320)
T KOG2486|consen  283 IRGVFLVDLPWIYVSSVTSLGRDLLLLHIAQ  313 (320)
T ss_pred             cccceeccCCceeeecccccCceeeeeehhh
Confidence                 12245778999999999988766554

>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]

Probab=98.75  E-value=2.7e-07  Score=67.12  Aligned_cols=154  Identities=20%  Similarity=0.253  Sum_probs=87.0

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhhCCC-C-C--------CCCccceeeEEEEEEECCEEEEEEEEeCCChhhh---ccc
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFISSSV-D-D--------LSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERF---RTL   78 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~~~~~-~-~--------~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~---~~~   78 (211)
                      .-.++|.|+|.+|.|||||+|.++.... . .        +..|.........+.-.+-..+++++||||.-++   +..
T Consensus        44 GF~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~nc  123 (336)
T KOG1547|consen   44 GFDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNC  123 (336)
T ss_pred             cCceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccch
Confidence            4578999999999999999999975443 1 1        1112222222223333455678899999993221   111


Q ss_pred             hhh-----------------------hc--cCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCC
Q 028300           79 TSS-----------------------YY--RGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRD  133 (211)
Q Consensus        79 ~~~-----------------------~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~  133 (211)
                      |..                       .+  ..++.++|.+..+.. ++..+.-.+++.+-     .-+-++-|+.|+|-.
T Consensus       124 WePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGh-sLrplDieflkrLt-----~vvNvvPVIakaDtl  197 (336)
T KOG1547|consen  124 WEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGH-SLRPLDIEFLKRLT-----EVVNVVPVIAKADTL  197 (336)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCC-ccCcccHHHHHHHh-----hhheeeeeEeecccc
Confidence            111                       11  245788888887753 23333222333322     223456677799964


Q ss_pred             C--CcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHHHH
Q 028300          134 S--ERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQ  171 (211)
Q Consensus       134 ~--~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~  171 (211)
                      .  ++..-.+.+++-...+++.+++-.+.+..-=+..++.
T Consensus       198 TleEr~~FkqrI~~el~~~~i~vYPq~~fded~ed~~lN~  237 (336)
T KOG1547|consen  198 TLEERSAFKQRIRKELEKHGIDVYPQDSFDEDLEDKTLND  237 (336)
T ss_pred             cHHHHHHHHHHHHHHHHhcCcccccccccccchhHHHHHH
Confidence            2  3333334455556678888888777665544444443

>cd01855 YqeH YqeH

Probab=98.75  E-value=2.1e-08  Score=72.38  Aligned_cols=55  Identities=22%  Similarity=0.427  Sum_probs=43.1

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhhCCC--------CCCCCccceeeEEEEEEECCEEEEEEEEeCCC
Q 028300           14 SFKILLIGDSGVGKSSLLVSFISSSV--------DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAG   71 (211)
Q Consensus        14 ~~~I~v~G~~~~GKssli~~l~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g   71 (211)
                      ..+++++|.+|+|||||+|+|.+...        ......+|++.....+.+..   .+.++||||
T Consensus       127 ~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~---~~~~~DtPG  189 (190)
T cd01855         127 GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGN---GKKLYDTPG  189 (190)
T ss_pred             CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCC---CCEEEeCcC
Confidence            46899999999999999999997543        23445567888777776643   478999998

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>COG1161 Predicted GTPases [General function prediction only]

Probab=98.74  E-value=2.3e-08  Score=77.67  Aligned_cols=58  Identities=22%  Similarity=0.366  Sum_probs=50.5

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCCh
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQ   72 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~   72 (211)
                      ...++++|+|-|++|||||||+|.+.......+.+|++.....+.++..   +.++||||.
T Consensus       130 ~~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q~i~~~~~---i~LlDtPGi  187 (322)
T COG1161         130 KRKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQWIKLDDG---IYLLDTPGI  187 (322)
T ss_pred             ccceEEEEEcCCCCcHHHHHHHHhcccceeeCCCCceecceEEEEcCCC---eEEecCCCc
Confidence            3458899999999999999999999888888888899988888877654   889999994

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=98.72  E-value=6.9e-08  Score=76.31  Aligned_cols=95  Identities=23%  Similarity=0.240  Sum_probs=68.0

Q ss_pred             hhhhccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHH----HHH
Q 028300           72 QERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGI----ALA  147 (211)
Q Consensus        72 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~----~~~  147 (211)
                      .++|..+...+...++++++|+|+.+...     . |.+.+..+  ..+.|+++|+||+|+.+. .+..+...    +++
T Consensus        50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~~-----s-~~~~l~~~--~~~~piilV~NK~DLl~k-~~~~~~~~~~l~~~~  120 (360)
T TIGR03597        50 DDDFLNLLNSLGDSNALIVYVVDIFDFEG-----S-LIPELKRF--VGGNPVLLVGNKIDLLPK-SVNLSKIKEWMKKRA  120 (360)
T ss_pred             HHHHHHHHhhcccCCcEEEEEEECcCCCC-----C-ccHHHHHH--hCCCCEEEEEEchhhCCC-CCCHHHHHHHHHHHH
Confidence            45677778888889999999999977531     1 33333333  136799999999999653 23333333    335


Q ss_pred             HHcCC---eEEEeeccCCCcHHHHHHHHHHH
Q 028300          148 KEHGS---LFLECSAKTRENVEQCFEQLALK  175 (211)
Q Consensus       148 ~~~~~---~~~~~Sa~~~~gv~~l~~~i~~~  175 (211)
                      ...++   .++.+||+++.|++++++.|.+.
T Consensus       121 k~~g~~~~~i~~vSAk~g~gv~eL~~~l~~~  151 (360)
T TIGR03597       121 KELGLKPVDIILVSAKKGNGIDELLDKIKKA  151 (360)
T ss_pred             HHcCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence            55666   48999999999999999998764

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=98.72  E-value=2.2e-07  Score=75.29  Aligned_cols=141  Identities=15%  Similarity=0.147  Sum_probs=85.6

Q ss_pred             CCCceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcE
Q 028300            9 NSYDLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQG   88 (211)
Q Consensus         9 ~~~~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~   88 (211)
                      ...+.++-++|+||||+||||||+.|.............-..+    ...+....++|.++|.  +... .......+|.
T Consensus        64 ~d~PPPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~GPiT----vvsgK~RRiTflEcp~--Dl~~-miDvaKIaDL  136 (1077)
T COG5192          64 KDLPPPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRGPIT----VVSGKTRRITFLECPS--DLHQ-MIDVAKIADL  136 (1077)
T ss_pred             ccCCCCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCCceE----EeecceeEEEEEeChH--HHHH-HHhHHHhhhe
Confidence            4457789999999999999999999986644222222211111    2245677899999993  3333 2334567899


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHhhhhccCCCcc-EEEEeecCCCCCCcccCHHHHHH-----HHHH-cCCeEEEeeccC
Q 028300           89 IILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCV-KMLVGNKVDRDSERVVSREEGIA-----LAKE-HGSLFLECSAKT  161 (211)
Q Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p-~viv~nK~Dl~~~~~v~~~~~~~-----~~~~-~~~~~~~~Sa~~  161 (211)
                      +++++|.+=....+.+.  ++.++..+    +.| ++-|+|..|+...........+.     +-.- .|+.+|.+|...
T Consensus       137 VlLlIdgnfGfEMETmE--FLnil~~H----GmPrvlgV~ThlDlfk~~stLr~~KKrlkhRfWtEiyqGaKlFylsgV~  210 (1077)
T COG5192         137 VLLLIDGNFGFEMETME--FLNILISH----GMPRVLGVVTHLDLFKNPSTLRSIKKRLKHRFWTEIYQGAKLFYLSGVE  210 (1077)
T ss_pred             eEEEeccccCceehHHH--HHHHHhhc----CCCceEEEEeecccccChHHHHHHHHHHhhhHHHHHcCCceEEEecccc
Confidence            99999987643333333  55555544    555 45688999985432111111111     1111 367888888765


Q ss_pred             C
Q 028300          162 R  162 (211)
Q Consensus       162 ~  162 (211)
                      +
T Consensus       211 n  211 (1077)
T COG5192         211 N  211 (1077)
T ss_pred             c
Confidence            3

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=98.72  E-value=3.8e-08  Score=68.65  Aligned_cols=57  Identities=23%  Similarity=0.312  Sum_probs=43.3

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCC
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAG   71 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g   71 (211)
                      ....+|+++|.+|+|||||+|.+.+..........+++.....+.+.   ..+.++||||
T Consensus        98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~~~~~---~~~~liDtPG  154 (155)
T cd01849          98 KKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQEVKLD---NKIKLLDTPG  154 (155)
T ss_pred             ccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEEEEec---CCEEEEECCC
Confidence            45688999999999999999999987654444555666655555543   3588999998

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>cd01856 YlqF YlqF

Probab=98.71  E-value=7.4e-08  Score=68.32  Aligned_cols=99  Identities=15%  Similarity=0.080  Sum_probs=65.3

Q ss_pred             CCChh-hhccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHH
Q 028300           69 TAGQE-RFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALA  147 (211)
Q Consensus        69 ~~g~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~  147 (211)
                      .||+. +........+.++|++++|+|++++....+..  +...      ..+.|.++|+||+|+.+...+  ....++.
T Consensus         2 ~~~~~~~~~~~~~~~i~~aD~il~v~D~~~~~~~~~~~--i~~~------~~~k~~ilVlNK~Dl~~~~~~--~~~~~~~   71 (171)
T cd01856           2 FPGHMAKALRQIKEKLKLVDLVIEVRDARIPLSSRNPL--LEKI------LGNKPRIIVLNKADLADPKKT--KKWLKYF   71 (171)
T ss_pred             CchHHHHHHHHHHHHHhhCCEEEEEeeccCccCcCChh--hHhH------hcCCCEEEEEehhhcCChHHH--HHHHHHH
Confidence            45643 23344567789999999999998764322111  2111      135789999999998543221  1122333


Q ss_pred             HHcCCeEEEeeccCCCcHHHHHHHHHHHHH
Q 028300          148 KEHGSLFLECSAKTRENVEQCFEQLALKIM  177 (211)
Q Consensus       148 ~~~~~~~~~~Sa~~~~gv~~l~~~i~~~~~  177 (211)
                      ...+..++.+|++++.|++++.+.+.+.+.
T Consensus        72 ~~~~~~vi~iSa~~~~gi~~L~~~l~~~l~  101 (171)
T cd01856          72 ESKGEKVLFVNAKSGKGVKKLLKAAKKLLK  101 (171)
T ss_pred             HhcCCeEEEEECCCcccHHHHHHHHHHHHH
Confidence            334456899999999999999999888763

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]

Probab=98.71  E-value=9.1e-09  Score=80.18  Aligned_cols=121  Identities=17%  Similarity=0.219  Sum_probs=93.4

Q ss_pred             CCCCceeeEEEEEcCCCCcHHHHHHHHhhCC--------C---------CCCCCccceeeEEEEEEECCEEEEEEEEeCC
Q 028300            8 SNSYDLSFKILLIGDSGVGKSSLLVSFISSS--------V---------DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTA   70 (211)
Q Consensus         8 ~~~~~~~~~I~v~G~~~~GKssli~~l~~~~--------~---------~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~   70 (211)
                      +....+--+|+++.+-.+||||...+++.-.        .         -......|.+.++..+.++..+..+.++|||
T Consensus        31 ~p~~akirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtp  110 (753)
T KOG0464|consen   31 NPAIAKIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTP  110 (753)
T ss_pred             CCchhhhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCC
Confidence            3444555689999999999999999886321        1         0111345788888889999999999999999


Q ss_pred             ChhhhccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCC
Q 028300           71 GQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDS  134 (211)
Q Consensus        71 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~  134 (211)
                      |+-+|+-....+++-.|+++.|||.+..-.-..+.. |++.     ...++|....+||+|...
T Consensus       111 ghvdf~leverclrvldgavav~dasagve~qtltv-wrqa-----dk~~ip~~~finkmdk~~  168 (753)
T KOG0464|consen  111 GHVDFRLEVERCLRVLDGAVAVFDASAGVEAQTLTV-WRQA-----DKFKIPAHCFINKMDKLA  168 (753)
T ss_pred             CcceEEEEHHHHHHHhcCeEEEEeccCCcccceeee-ehhc-----cccCCchhhhhhhhhhhh
Confidence            999999989999999999999999986433333333 6544     456899999999999754

>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]

Probab=98.70  E-value=1.5e-07  Score=71.60  Aligned_cols=141  Identities=20%  Similarity=0.164  Sum_probs=95.2

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhh-------CC---CC-----CCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhc
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFIS-------SS---VD-----DLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFR   76 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~~-------~~---~~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~   76 (211)
                      ...++|.-+|+..-|||||..++..       .+   ++     ......|.+.....+.++.....+-=.|+|||.+|-
T Consensus        52 KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHADYI  131 (449)
T KOG0460|consen   52 KPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHADYI  131 (449)
T ss_pred             CCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHHHH
Confidence            4568999999999999999887641       11   11     111234667777777776667777778999999997


Q ss_pred             cchhhhccCCcEEEEEEECCCh---hhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcc---cCHHHHHHHHHHc
Q 028300           77 TLTSSYYRGAQGIILVYDVTRR---ETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERV---VSREEGIALAKEH  150 (211)
Q Consensus        77 ~~~~~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~---v~~~~~~~~~~~~  150 (211)
                      ........+.|+.|+|+.++|.   ++-+.+.  +.+.+      .-..+++.+||.|+.++.+   .-+-+++++...+
T Consensus       132 KNMItGaaqMDGaILVVaatDG~MPQTrEHlL--LArQV------GV~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~  203 (449)
T KOG0460|consen  132 KNMITGAAQMDGAILVVAATDGPMPQTREHLL--LARQV------GVKHIVVFINKVDLVDDPEMLELVEMEIRELLSEF  203 (449)
T ss_pred             HHhhcCccccCceEEEEEcCCCCCcchHHHHH--HHHHc------CCceEEEEEecccccCCHHHHHHHHHHHHHHHHHc
Confidence            7677778899999999999984   3333332  11111      1245788889999964322   2233456667776


Q ss_pred             C-----CeEEEeecc
Q 028300          151 G-----SLFLECSAK  160 (211)
Q Consensus       151 ~-----~~~~~~Sa~  160 (211)
                      +     .|++.-||+
T Consensus       204 gf~Gd~~PvI~GSAL  218 (449)
T KOG0460|consen  204 GFDGDNTPVIRGSAL  218 (449)
T ss_pred             CCCCCCCCeeecchh
Confidence            5     467776664

>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]

Probab=98.69  E-value=1.2e-06  Score=70.94  Aligned_cols=139  Identities=19%  Similarity=0.248  Sum_probs=86.8

Q ss_pred             CCCCCceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCC-----------------------------------------
Q 028300            7 QSNSYDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSP-----------------------------------------   44 (211)
Q Consensus         7 ~~~~~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~-----------------------------------------   44 (211)
                      .....+.-.||+|+|+..+||||.+..+..... +....                                         
T Consensus       301 sYnt~DhLPRVVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRaPVKVTLsEGPyHVAqFrDSsREfDLTKE~DLq~LR  380 (980)
T KOG0447|consen  301 SYNTQDHLPRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTLSEGPHHVALFKDSSREFDLTKEEDLAALR  380 (980)
T ss_pred             cccccccCceEEEEcCccccchHHHHHHHHhccCcCCCcceeccCCeEEEeccCcchhhhhccccccccccchhHHHHHH
Confidence            345677888999999999999999998863331 11000                                         


Q ss_pred             -----------ccceeeE--EEEEEECCEE-EEEEEEeCCCh-------------hhhccchhhhccCCcEEEEEEECCC
Q 028300           45 -----------TIGVDFK--IKLLTVAGKR-LKLTIWDTAGQ-------------ERFRTLTSSYYRGAQGIILVYDVTR   97 (211)
Q Consensus        45 -----------~~~~~~~--~~~~~~~~~~-~~~~l~D~~g~-------------~~~~~~~~~~~~~~d~~i~v~d~~~   97 (211)
                                 -.|.++.  .+..+..+.+ ....++|+||.             +....+..+++.+.+++|+|+--.+
T Consensus       381 ~e~E~RMr~sVr~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGS  460 (980)
T KOG0447|consen  381 HEIELRMRKNVKEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGS  460 (980)
T ss_pred             HHHHHHHHhcccCCcccccceEEEeecCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCC
Confidence                       0011111  1222222222 35778999992             2233456788999999999987554


Q ss_pred             hhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHH
Q 028300           98 RETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKE  149 (211)
Q Consensus        98 ~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~  149 (211)
                      .+.-.....-+....    .+.+...++|+||.|+.+..-.+...+++...-
T Consensus       461 VDAERSnVTDLVsq~----DP~GrRTIfVLTKVDlAEknlA~PdRI~kIleG  508 (980)
T KOG0447|consen  461 VDAERSIVTDLVSQM----DPHGRRTIFVLTKVDLAEKNVASPSRIQQIIEG  508 (980)
T ss_pred             cchhhhhHHHHHHhc----CCCCCeeEEEEeecchhhhccCCHHHHHHHHhc
Confidence            433222222122222    466889999999999988766777777766553

>cd01858 NGP_1 NGP-1

Probab=98.67  E-value=1.4e-07  Score=65.85  Aligned_cols=91  Identities=14%  Similarity=0.001  Sum_probs=57.8

Q ss_pred             hhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeecc
Q 028300           81 SYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAK  160 (211)
Q Consensus        81 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~  160 (211)
                      ..+..+|++++|+|+.++..-.+ .. +...+..  ...++|+++|+||+|+.+.... ......+...+....+.+||+
T Consensus         4 ~~l~~aD~il~VvD~~~p~~~~~-~~-i~~~l~~--~~~~~p~ilVlNKiDl~~~~~~-~~~~~~~~~~~~~~~~~iSa~   78 (157)
T cd01858           4 KVIDSSDVVIQVLDARDPMGTRC-KH-VEEYLKK--EKPHKHLIFVLNKCDLVPTWVT-ARWVKILSKEYPTIAFHASIN   78 (157)
T ss_pred             HhhhhCCEEEEEEECCCCccccC-HH-HHHHHHh--ccCCCCEEEEEEchhcCCHHHH-HHHHHHHhcCCcEEEEEeecc
Confidence            34678999999999998632211 11 3333332  2346899999999999643321 111222222222335789999


Q ss_pred             CCCcHHHHHHHHHHHH
Q 028300          161 TRENVEQCFEQLALKI  176 (211)
Q Consensus       161 ~~~gv~~l~~~i~~~~  176 (211)
                      ++.|++++++.+.+.+
T Consensus        79 ~~~~~~~L~~~l~~~~   94 (157)
T cd01858          79 NPFGKGSLIQLLRQFS   94 (157)
T ss_pred             ccccHHHHHHHHHHHH
Confidence            9999999999987754

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=98.63  E-value=1.8e-07  Score=65.22  Aligned_cols=85  Identities=15%  Similarity=0.046  Sum_probs=56.0

Q ss_pred             cEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHH
Q 028300           87 QGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVE  166 (211)
Q Consensus        87 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~  166 (211)
                      |++++|+|+.++.+....   +...  ......++|+++|+||+|+.+...+. .....+.......++.+||+++.|++
T Consensus         1 Dvvl~VvD~~~p~~~~~~---~i~~--~~~~~~~~p~IiVlNK~Dl~~~~~~~-~~~~~~~~~~~~~ii~vSa~~~~gi~   74 (155)
T cd01849           1 DVILEVLDARDPLGTRSP---DIER--VLIKEKGKKLILVLNKADLVPKEVLR-KWLAYLRHSYPTIPFKISATNGQGIE   74 (155)
T ss_pred             CEEEEEEeccCCccccCH---HHHH--HHHhcCCCCEEEEEechhcCCHHHHH-HHHHHHHhhCCceEEEEeccCCcChh
Confidence            789999999887654432   1211  11124578999999999985432211 11112222335568999999999999


Q ss_pred             HHHHHHHHHHH
Q 028300          167 QCFEQLALKIM  177 (211)
Q Consensus       167 ~l~~~i~~~~~  177 (211)
                      ++++.+.+...
T Consensus        75 ~L~~~i~~~~~   85 (155)
T cd01849          75 KKESAFTKQTN   85 (155)
T ss_pred             hHHHHHHHHhH
Confidence            99999877643

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=98.63  E-value=1.9e-07  Score=71.28  Aligned_cols=101  Identities=18%  Similarity=0.104  Sum_probs=67.8

Q ss_pred             CCChhh-hccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHH
Q 028300           69 TAGQER-FRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALA  147 (211)
Q Consensus        69 ~~g~~~-~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~  147 (211)
                      .|||.. ........+..+|++++|+|+.++.+..+..  +...+      .+.|+++|+||+|+.+....  ....++.
T Consensus         4 fpgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~~~--i~~~l------~~kp~IiVlNK~DL~~~~~~--~~~~~~~   73 (276)
T TIGR03596         4 FPGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRNPM--IDEIR------GNKPRLIVLNKADLADPAVT--KQWLKYF   73 (276)
T ss_pred             ChHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCChh--HHHHH------CCCCEEEEEEccccCCHHHH--HHHHHHH
Confidence            567653 2334567789999999999998765433211  22222      26799999999998543211  2222233


Q ss_pred             HHcCCeEEEeeccCCCcHHHHHHHHHHHHHhc
Q 028300          148 KEHGSLFLECSAKTRENVEQCFEQLALKIMEV  179 (211)
Q Consensus       148 ~~~~~~~~~~Sa~~~~gv~~l~~~i~~~~~~~  179 (211)
                      ...+.+++.+|+.++.|++++.+.+.+.+.+.
T Consensus        74 ~~~~~~vi~iSa~~~~gi~~L~~~i~~~~~~~  105 (276)
T TIGR03596        74 EEKGIKALAINAKKGKGVKKIIKAAKKLLKEK  105 (276)
T ss_pred             HHcCCeEEEEECCCcccHHHHHHHHHHHHHHh
Confidence            33566789999999999999999988876543

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain

Probab=98.63  E-value=1.2e-06  Score=64.80  Aligned_cols=88  Identities=18%  Similarity=0.106  Sum_probs=55.0

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhhC--CCCCCC----CccceeeEEEEEEECCEEEEEEEEeCCChhhhcc------ch
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFISS--SVDDLS----PTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRT------LT   79 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~~~--~~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~------~~   79 (211)
                      ..-.-|+|+|++++|||+|+|+|++.  .|....    .|.|.......... +....+.++||+|......      ..
T Consensus         5 ~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~-~~~~~v~~lDteG~~~~~~~~~~~~~~   83 (224)
T cd01851           5 FPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKL-GKEHAVLLLDTEGTDGRERGEFEDDAR   83 (224)
T ss_pred             CCEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccC-CCcceEEEEecCCcCccccCchhhhhH
Confidence            45567999999999999999999998  663222    22332222211111 2356899999999543221      12


Q ss_pred             hhhccC--CcEEEEEEECCChhh
Q 028300           80 SSYYRG--AQGIILVYDVTRRET  100 (211)
Q Consensus        80 ~~~~~~--~d~~i~v~d~~~~~s  100 (211)
                      ...+..  +|++||..+......
T Consensus        84 ~~~l~~llss~~i~n~~~~~~~~  106 (224)
T cd01851          84 LFALATLLSSVLIYNSWETILGD  106 (224)
T ss_pred             HHHHHHHHhCEEEEeccCcccHH
Confidence            223333  789998888775443

Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein

>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]

Probab=98.61  E-value=5.3e-07  Score=69.76  Aligned_cols=168  Identities=14%  Similarity=0.134  Sum_probs=92.5

Q ss_pred             CCCCCceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCC-------------------C--------------------ccc
Q 028300            7 QSNSYDLSFKILLIGDSGVGKSSLLVSFISSSVDDLS-------------------P--------------------TIG   47 (211)
Q Consensus         7 ~~~~~~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~-------------------~--------------------~~~   47 (211)
                      +....=.++||+++|...+|||||+..|..++.++..                   .                    ..+
T Consensus       126 ~~~~DF~E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg  205 (641)
T KOG0463|consen  126 PTEKDFIEARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHG  205 (641)
T ss_pred             CCCccceeEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCC
Confidence            3344457899999999999999999877644321100                   0                    111


Q ss_pred             eeeEEEEEEECCEEEEEEEEeCCChhhhccc--hhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEE
Q 028300           48 VDFKIKLLTVAGKRLKLTIWDTAGQERFRTL--TSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKML  125 (211)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~--~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~vi  125 (211)
                      -......+. ++....++|+|++|++.|-..  ..+.-.-.|...+.+-++..     +..+-.+.+. ......+|+++
T Consensus       206 ~~LdWvkIc-e~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaG-----IiGmTKEHLg-LALaL~VPVfv  278 (641)
T KOG0463|consen  206 HNLDWVKIC-EDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAG-----IIGMTKEHLG-LALALHVPVFV  278 (641)
T ss_pred             Ccccceeec-cccceeEEEEeccchhhhhheeeeccccCCCCceEEEeccccc-----ceeccHHhhh-hhhhhcCcEEE
Confidence            122212211 223346899999999988532  22222335766776665542     1110111111 11245789999


Q ss_pred             EeecCCCCCCcccCHH--HHHHHH--------------------------HHcCCeEEEeeccCCCcHHHHHHHHHHHHH
Q 028300          126 VGNKVDRDSERVVSRE--EGIALA--------------------------KEHGSLFLECSAKTRENVEQCFEQLALKIM  177 (211)
Q Consensus       126 v~nK~Dl~~~~~v~~~--~~~~~~--------------------------~~~~~~~~~~Sa~~~~gv~~l~~~i~~~~~  177 (211)
                      |+||+|..+.....+.  ....+.                          .+.-+|+|.+|-.+|.++. ++...+..+-
T Consensus       279 VVTKIDMCPANiLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~-LLkmFLNlls  357 (641)
T KOG0463|consen  279 VVTKIDMCPANILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLP-LLKMFLNLLS  357 (641)
T ss_pred             EEEeeccCcHHHHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChH-HHHHHHhhcC
Confidence            9999998655432211  111111                          1122468999999999986 4444455444


Q ss_pred             hccch
Q 028300          178 EVPSL  182 (211)
Q Consensus       178 ~~~~~  182 (211)
                      -++..
T Consensus       358 ~R~~~  362 (641)
T KOG0463|consen  358 LRRQL  362 (641)
T ss_pred             ccccc
Confidence            44443

>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=98.61  E-value=9.7e-08  Score=72.62  Aligned_cols=88  Identities=23%  Similarity=0.213  Sum_probs=56.1

Q ss_pred             CCceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEE---------------CCEEEEEEEEeCCChh
Q 028300           10 SYDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTV---------------AGKRLKLTIWDTAGQE   73 (211)
Q Consensus        10 ~~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~---------------~~~~~~~~l~D~~g~~   73 (211)
                      ...+.++|+|+|.|++|||||+|.|..... ....|....+-..-.+.+               ...+..++++|++|.-
T Consensus        16 R~~~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLv   95 (391)
T KOG1491|consen   16 RDGNNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLV   95 (391)
T ss_pred             CCCCcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccc
Confidence            345788999999999999999999997765 222222221111111111               1135678999999832


Q ss_pred             h-------hccchhhhccCCcEEEEEEECCC
Q 028300           74 R-------FRTLTSSYYRGAQGIILVYDVTR   97 (211)
Q Consensus        74 ~-------~~~~~~~~~~~~d~~i~v~d~~~   97 (211)
                      .       ..+....-++.+|+++.|+++.+
T Consensus        96 kGAs~G~GLGN~FLs~iR~vDaifhVVr~f~  126 (391)
T KOG1491|consen   96 KGASAGEGLGNKFLSHIRHVDAIFHVVRAFE  126 (391)
T ss_pred             cCcccCcCchHHHHHhhhhccceeEEEEecC
Confidence            1       12223345678899999998664

>PRK14974 cell division protein FtsY; Provisional

Probab=98.60  E-value=1.1e-07  Score=74.02  Aligned_cols=93  Identities=17%  Similarity=0.223  Sum_probs=55.2

Q ss_pred             EEEEEEeCCChhhhcc-c---hhhh--ccCCcEEEEEEECCChhh-HHHHHHHHHHHhhhhccCCCccEEEEeecCCCCC
Q 028300           62 LKLTIWDTAGQERFRT-L---TSSY--YRGAQGIILVYDVTRRET-FTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDS  134 (211)
Q Consensus        62 ~~~~l~D~~g~~~~~~-~---~~~~--~~~~d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~  134 (211)
                      ..+.|+||+|...... +   ...+  ..+.|..++|+|+...+. .+.+.. +...+        .+--+|+||.|...
T Consensus       223 ~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~-f~~~~--------~~~giIlTKlD~~~  293 (336)
T PRK14974        223 IDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQARE-FNEAV--------GIDGVILTKVDADA  293 (336)
T ss_pred             CCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHHH-HHhcC--------CCCEEEEeeecCCC
Confidence            4689999999543221 1   1111  235789999999876432 222222 22211        13478999999743


Q ss_pred             CcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHH
Q 028300          135 ERVVSREEGIALAKEHGSLFLECSAKTRENVEQCF  169 (211)
Q Consensus       135 ~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~  169 (211)
                      .--    .+...+...+.|+..++  +|.+++++.
T Consensus       294 ~~G----~~ls~~~~~~~Pi~~i~--~Gq~v~Dl~  322 (336)
T PRK14974        294 KGG----AALSIAYVIGKPILFLG--VGQGYDDLI  322 (336)
T ss_pred             Ccc----HHHHHHHHHCcCEEEEe--CCCChhhcc
Confidence            321    23344555688888876  788888775

>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=98.59  E-value=6.2e-08  Score=72.74  Aligned_cols=115  Identities=15%  Similarity=0.109  Sum_probs=78.9

Q ss_pred             EEEEEEeCCChhhhccchhhhccCCcEEEEEEECCC----hhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcc
Q 028300           62 LKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTR----RETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERV  137 (211)
Q Consensus        62 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~  137 (211)
                      ..+.|.|+||++-.-........-.|+.++++..++    +++-+.+..  .++      ..-+.++|+-||+|+..+.+
T Consensus       125 RHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaa--vei------M~LkhiiilQNKiDli~e~~  196 (466)
T KOG0466|consen  125 RHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAA--VEI------MKLKHIIILQNKIDLIKESQ  196 (466)
T ss_pred             EEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHH--HHH------hhhceEEEEechhhhhhHHH
Confidence            467899999998765555555556799999888775    444444432  111      12345789999999965543


Q ss_pred             c--CHHHHHHHHHH---cCCeEEEeeccCCCcHHHHHHHHHHHHHhccchhc
Q 028300          138 V--SREEGIALAKE---HGSLFLECSAKTRENVEQCFEQLALKIMEVPSLLE  184 (211)
Q Consensus       138 v--~~~~~~~~~~~---~~~~~~~~Sa~~~~gv~~l~~~i~~~~~~~~~~~~  184 (211)
                      .  ..+.+..|...   .++|++++||....+++-+.+.|...+..-.+-+.
T Consensus       197 A~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIPvPvRdf~  248 (466)
T KOG0466|consen  197 ALEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIPVPVRDFT  248 (466)
T ss_pred             HHHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCCCCccccC
Confidence            2  22334444442   46799999999999999999999988766555443

>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]

Probab=98.58  E-value=1.6e-07  Score=78.14  Aligned_cols=115  Identities=26%  Similarity=0.375  Sum_probs=85.3

Q ss_pred             CCCceeeEEEEEcCCCCcHHHHHHHHhhCCC---------------CCCCCccceeeEEEEEEECCEEEEEEEEeCCChh
Q 028300            9 NSYDLSFKILLIGDSGVGKSSLLVSFISSSV---------------DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQE   73 (211)
Q Consensus         9 ~~~~~~~~I~v~G~~~~GKssli~~l~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~   73 (211)
                      ...+.--+|+++.+..-|||||+..|....-               -+...+.|.+...-.+.....++.++++|+|||-
T Consensus         4 ~~~~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghv   83 (887)
T KOG0467|consen    4 KGSEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHV   83 (887)
T ss_pred             CCCCceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCcc
Confidence            3455667899999999999999999874331               2223455667666666666678899999999999


Q ss_pred             hhccchhhhccCCcEEEEEEECCCh---hhHHHHHHHHHHHhhhhccCCCccEEEEeecCCC
Q 028300           74 RFRTLTSSYYRGAQGIILVYDVTRR---ETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDR  132 (211)
Q Consensus        74 ~~~~~~~~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl  132 (211)
                      +|.+......+-+|++++.+|+.+.   ++..-+++.|.         .+...++|+||+|.
T Consensus        84 df~sevssas~l~d~alvlvdvvegv~~qt~~vlrq~~~---------~~~~~~lvinkidr  136 (887)
T KOG0467|consen   84 DFSSEVSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWI---------EGLKPILVINKIDR  136 (887)
T ss_pred             chhhhhhhhhhhcCCcEEEEeeccccchhHHHHHHHHHH---------ccCceEEEEehhhh
Confidence            9999888888899999999998763   33333333333         24445899999993

>TIGR00092 GTP-binding protein YchF

Probab=98.55  E-value=2.1e-07  Score=72.85  Aligned_cols=81  Identities=17%  Similarity=0.088  Sum_probs=52.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhhCCC-C--CCCCc-cceeeEEEEEEECC---------------EEEEEEEEeCCChhh-
Q 028300           15 FKILLIGDSGVGKSSLLVSFISSSV-D--DLSPT-IGVDFKIKLLTVAG---------------KRLKLTIWDTAGQER-   74 (211)
Q Consensus        15 ~~I~v~G~~~~GKssli~~l~~~~~-~--~~~~~-~~~~~~~~~~~~~~---------------~~~~~~l~D~~g~~~-   74 (211)
                      .+++++|.|++|||||++.+.+... .  .+..+ ......  .+...+               ....+.+.|+||.-. 
T Consensus         3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g--~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~g   80 (368)
T TIGR00092         3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAG--VVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGG   80 (368)
T ss_pred             ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCcee--EEEechhHHHHHHHHhCCcCcCCceEEEEeccccccc
Confidence            7899999999999999999998765 2  22111 111111  112222               124678999999432 


Q ss_pred             ------hccchhhhccCCcEEEEEEECCC
Q 028300           75 ------FRTLTSSYYRGAQGIILVYDVTR   97 (211)
Q Consensus        75 ------~~~~~~~~~~~~d~~i~v~d~~~   97 (211)
                            ........++.+|++++|+++.+
T Consensus        81 As~g~Glgn~fL~~ir~~d~l~hVvr~f~  109 (368)
T TIGR00092        81 ASKGEGLGNQFLANIREVDIIQHVVRCFE  109 (368)
T ss_pred             hhcccCcchHHHHHHHhCCEEEEEEeCCC
Confidence                  22234456789999999999853

This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=98.55  E-value=9.2e-07  Score=68.62  Aligned_cols=142  Identities=20%  Similarity=0.274  Sum_probs=79.1

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhhCCC-----------CCCCC-----------ccceeeEEEEEE-------------E
Q 028300           13 LSFKILLIGDSGVGKSSLLVSFISSSV-----------DDLSP-----------TIGVDFKIKLLT-------------V   57 (211)
Q Consensus        13 ~~~~I~v~G~~~~GKssli~~l~~~~~-----------~~~~~-----------~~~~~~~~~~~~-------------~   57 (211)
                      ..-.|+++|++|+||||++..|...-.           +.+..           ..+..+......             .
T Consensus       113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~  192 (318)
T PRK10416        113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAA  192 (318)
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHH
Confidence            456889999999999999998863211           00000           001111100000             0


Q ss_pred             CCEEEEEEEEeCCChhhhcc--------chh---h-hccCCcEEEEEEECCChh-hHHHHHHHHHHHhhhhccCCCccEE
Q 028300           58 AGKRLKLTIWDTAGQERFRT--------LTS---S-YYRGAQGIILVYDVTRRE-TFTNLSDVWAKEVDLYSTNQDCVKM  124 (211)
Q Consensus        58 ~~~~~~~~l~D~~g~~~~~~--------~~~---~-~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~p~v  124 (211)
                      ....+.+.++||||......        +..   . .-...+..++|+|++... .+..+.. +...        -.+.-
T Consensus       193 ~~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a~~-f~~~--------~~~~g  263 (318)
T PRK10416        193 KARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQAKA-FHEA--------VGLTG  263 (318)
T ss_pred             HhCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHHHHH-HHhh--------CCCCE
Confidence            11345789999999543211        111   1 123468899999998642 2333222 2111        13447


Q ss_pred             EEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHH
Q 028300          125 LVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCF  169 (211)
Q Consensus       125 iv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~  169 (211)
                      +|+||.|....-    -.+.......+.|+..++  +|.+++++-
T Consensus       264 iIlTKlD~t~~~----G~~l~~~~~~~~Pi~~v~--~Gq~~~Dl~  302 (318)
T PRK10416        264 IILTKLDGTAKG----GVVFAIADELGIPIKFIG--VGEGIDDLQ  302 (318)
T ss_pred             EEEECCCCCCCc----cHHHHHHHHHCCCEEEEe--CCCChhhCc
Confidence            999999954321    223445566688988887  777787764

>PRK12289 GTPase RsgA; Reviewed

Probab=98.54  E-value=1.5e-07  Score=73.90  Aligned_cols=58  Identities=26%  Similarity=0.338  Sum_probs=40.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCCCCCCCCccc-------eeeEEEEEEECCEEEEEEEEeCCChhhhc
Q 028300           16 KILLIGDSGVGKSSLLVSFISSSVDDLSPTIG-------VDFKIKLLTVAGKRLKLTIWDTAGQERFR   76 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~l~D~~g~~~~~   76 (211)
                      .++|+|++|||||||||+|+...........+       ++.....+.+....   .|+||||...+.
T Consensus       174 i~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l~~g~---~liDTPG~~~~~  238 (352)
T PRK12289        174 ITVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFELPNGG---LLADTPGFNQPD  238 (352)
T ss_pred             eEEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEECCCCc---EEEeCCCccccc
Confidence            37999999999999999999765433333333       55555555554333   688999975433

>PRK12288 GTPase RsgA; Reviewed

Probab=98.53  E-value=1.7e-07  Score=73.47  Aligned_cols=57  Identities=23%  Similarity=0.353  Sum_probs=38.3

Q ss_pred             EEEEcCCCCcHHHHHHHHhhCCCCCCCCcc-------ceeeEEEEEEECCEEEEEEEEeCCChhhhc
Q 028300           17 ILLIGDSGVGKSSLLVSFISSSVDDLSPTI-------GVDFKIKLLTVAGKRLKLTIWDTAGQERFR   76 (211)
Q Consensus        17 I~v~G~~~~GKssli~~l~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~   76 (211)
                      ++|+|.+|||||||||+|++.....+....       .++.....+.+....   .++||||..++.
T Consensus       208 ~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~~---~liDTPGir~~~  271 (347)
T PRK12288        208 SIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHGG---DLIDSPGVREFG  271 (347)
T ss_pred             EEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCCC---EEEECCCCCccc
Confidence            789999999999999999976542222211       244444445554332   489999976655

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=98.52  E-value=4.7e-07  Score=69.52  Aligned_cols=101  Identities=20%  Similarity=0.139  Sum_probs=68.1

Q ss_pred             CCChhhh-ccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHH
Q 028300           69 TAGQERF-RTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALA  147 (211)
Q Consensus        69 ~~g~~~~-~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~  147 (211)
                      .|||..- .......+..+|++++|+|+.++.+..+..  +...+      .+.|+++|+||+|+.+...  ......+.
T Consensus         7 fpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~~~--l~~~~------~~kp~iiVlNK~DL~~~~~--~~~~~~~~   76 (287)
T PRK09563          7 FPGHMAKARREIKENLKLVDVVIEVLDARIPLSSENPM--IDKII------GNKPRLLILNKSDLADPEV--TKKWIEYF   76 (287)
T ss_pred             cHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCChh--HHHHh------CCCCEEEEEEchhcCCHHH--HHHHHHHH
Confidence            6776532 234567789999999999998765432211  22221      2689999999999854321  12223333


Q ss_pred             HHcCCeEEEeeccCCCcHHHHHHHHHHHHHhc
Q 028300          148 KEHGSLFLECSAKTRENVEQCFEQLALKIMEV  179 (211)
Q Consensus       148 ~~~~~~~~~~Sa~~~~gv~~l~~~i~~~~~~~  179 (211)
                      ...+.+++.+|+.++.|++++.+.+.+.+.+.
T Consensus        77 ~~~~~~vi~vSa~~~~gi~~L~~~l~~~l~~~  108 (287)
T PRK09563         77 EEQGIKALAINAKKGQGVKKILKAAKKLLKEK  108 (287)
T ss_pred             HHcCCeEEEEECCCcccHHHHHHHHHHHHHHH
Confidence            44467889999999999999999888776543

>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]

Probab=98.51  E-value=3e-06  Score=70.07  Aligned_cols=144  Identities=17%  Similarity=0.246  Sum_probs=83.7

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhhCCC-CC-CCCc-------------------cc-----------------------
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFISSSV-DD-LSPT-------------------IG-----------------------   47 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~~~~~-~~-~~~~-------------------~~-----------------------   47 (211)
                      +..-||+|.|..++||||++|+++.... +. ..++                   .+                       
T Consensus       107 r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~  186 (749)
T KOG0448|consen  107 RRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDL  186 (749)
T ss_pred             hcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCccccc
Confidence            4567999999999999999999985443 11 1110                   00                       


Q ss_pred             eeeEEEEEEECCE-----EEEEEEEeCCChh---hhccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCC
Q 028300           48 VDFKIKLLTVAGK-----RLKLTIWDTAGQE---RFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQ  119 (211)
Q Consensus        48 ~~~~~~~~~~~~~-----~~~~~l~D~~g~~---~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~  119 (211)
                      .......+.++..     .-.+.++|.||.+   +..+-...+...+|++|+|..+.+-....+..  ++....    ..
T Consensus       187 ~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~sek~--Ff~~vs----~~  260 (749)
T KOG0448|consen  187 GAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSEKQ--FFHKVS----EE  260 (749)
T ss_pred             CcceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHHHH--HHHHhh----cc
Confidence            0000111111111     1157788999943   34444566778899999999998864433333  333222    23


Q ss_pred             CccEEEEeecCCCCCCcccCHHHHHHHHHHcCC--------eEEEeeccC
Q 028300          120 DCVKMLVGNKVDRDSERVVSREEGIALAKEHGS--------LFLECSAKT  161 (211)
Q Consensus       120 ~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~--------~~~~~Sa~~  161 (211)
                      +.-++|+-||.|....++...++++...+++..        .+|.+|++.
T Consensus       261 KpniFIlnnkwDasase~ec~e~V~~Qi~eL~v~~~~eA~DrvfFVS~~e  310 (749)
T KOG0448|consen  261 KPNIFILNNKWDASASEPECKEDVLKQIHELSVVTEKEAADRVFFVSAKE  310 (749)
T ss_pred             CCcEEEEechhhhhcccHHHHHHHHHHHHhcCcccHhhhcCeeEEEeccc
Confidence            666788888989865544344444333333321        378888543

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=98.48  E-value=9.5e-07  Score=67.14  Aligned_cols=94  Identities=15%  Similarity=0.166  Sum_probs=55.4

Q ss_pred             EEEEEEEeCCChhhhccchh-------hh-----ccCCcEEEEEEECCChh-hHHHHHHHHHHHhhhhccCCCccEEEEe
Q 028300           61 RLKLTIWDTAGQERFRTLTS-------SY-----YRGAQGIILVYDVTRRE-TFTNLSDVWAKEVDLYSTNQDCVKMLVG  127 (211)
Q Consensus        61 ~~~~~l~D~~g~~~~~~~~~-------~~-----~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~p~viv~  127 (211)
                      ++.+.++||||....+....       ..     -..+|..++|+|++... .+..+.. +.+.+        .+.-+|+
T Consensus       154 ~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~-f~~~~--------~~~g~Il  224 (272)
T TIGR00064       154 NIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQAKV-FNEAV--------GLTGIIL  224 (272)
T ss_pred             CCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHHHHH-HHhhC--------CCCEEEE
Confidence            46789999999653322111       11     12479999999998532 2322222 22111        2458999


Q ss_pred             ecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHH
Q 028300          128 NKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCF  169 (211)
Q Consensus       128 nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~  169 (211)
                      ||.|.....    -.+.......+.|+..++  +|.+++++-
T Consensus       225 TKlDe~~~~----G~~l~~~~~~~~Pi~~~~--~Gq~~~dl~  260 (272)
T TIGR00064       225 TKLDGTAKG----GIILSIAYELKLPIKFIG--VGEKIDDLA  260 (272)
T ss_pred             EccCCCCCc----cHHHHHHHHHCcCEEEEe--CCCChHhCc
Confidence            999974332    223444556688887777  677777653

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=98.48  E-value=5.9e-07  Score=61.61  Aligned_cols=78  Identities=18%  Similarity=0.122  Sum_probs=51.7

Q ss_pred             hhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeec
Q 028300           80 SSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSA  159 (211)
Q Consensus        80 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa  159 (211)
                      ...+..+|++++|+|+.++.+..+. . +...+...  ..++|+++|+||+|+.++..  ......+....+..++.+||
T Consensus         6 ~~~i~~aD~vl~ViD~~~p~~~~~~-~-l~~~l~~~--~~~k~~iivlNK~DL~~~~~--~~~~~~~~~~~~~~ii~iSa   79 (141)
T cd01857           6 WRVVERSDIVVQIVDARNPLLFRPP-D-LERYVKEV--DPRKKNILLLNKADLLTEEQ--RKAWAEYFKKEGIVVVFFSA   79 (141)
T ss_pred             HHHHhhCCEEEEEEEccCCcccCCH-H-HHHHHHhc--cCCCcEEEEEechhcCCHHH--HHHHHHHHHhcCCeEEEEEe
Confidence            4457889999999999887653321 1 22333222  24789999999999854332  22334455566678999999


Q ss_pred             cCCC
Q 028300          160 KTRE  163 (211)
Q Consensus       160 ~~~~  163 (211)
                      .++.
T Consensus        80 ~~~~   83 (141)
T cd01857          80 LKEN   83 (141)
T ss_pred             cCCC
Confidence            8764

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]

Probab=98.45  E-value=1.3e-06  Score=64.42  Aligned_cols=122  Identities=14%  Similarity=0.113  Sum_probs=76.0

Q ss_pred             ECCEEEEEEEEeCCChhhhccchhhhccCCcEEEEEEECCChh----------hHHHHHHHHHHHhhhhccCCCccEEEE
Q 028300           57 VAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRE----------TFTNLSDVWAKEVDLYSTNQDCVKMLV  126 (211)
Q Consensus        57 ~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~----------s~~~~~~~~~~~~~~~~~~~~~p~viv  126 (211)
                      +.-..+.++.+|.+|+.+.+.-|..++...-++|+|+..++-+          .+.+....+...-... -...+.+++.
T Consensus       197 FqVdkv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNR-wL~tisvIlF  275 (379)
T KOG0099|consen  197 FQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNR-WLRTISVILF  275 (379)
T ss_pred             EeccccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhh-HHhhhheeEE
Confidence            3345567999999999999999999999999999999987521          1222222111111111 1235788999


Q ss_pred             eecCCCCCCc------------------------------ccCHHHHHHHHHH--------c-----CCeEEEeeccCCC
Q 028300          127 GNKVDRDSER------------------------------VVSREEGIALAKE--------H-----GSLFLECSAKTRE  163 (211)
Q Consensus       127 ~nK~Dl~~~~------------------------------~v~~~~~~~~~~~--------~-----~~~~~~~Sa~~~~  163 (211)
                      +||.|+..++                              ......++.+.+.        .     -+-+..+-|.+.+
T Consensus       276 LNKqDllaeKi~Agk~~i~dyFpEf~~y~~p~da~~es~~d~~v~raK~fird~FlRiSta~~Dg~h~CYpHFTcAvDTe  355 (379)
T KOG0099|consen  276 LNKQDLLAEKILAGKSKIEDYFPEFARYTTPEDATPESGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTE  355 (379)
T ss_pred             ecHHHHHHHHHHcchhhHHHhChHHhccCCccccCCCCCCChhhHHHHHhhhhhHhhhccccCCCceecccceeEeechH
Confidence            9999973221                              0001111111111        1     1224667788899


Q ss_pred             cHHHHHHHHHHHHHhc
Q 028300          164 NVEQCFEQLALKIMEV  179 (211)
Q Consensus       164 gv~~l~~~i~~~~~~~  179 (211)
                      +|.++|+.....+...
T Consensus       356 nIrrVFnDcrdiIqr~  371 (379)
T KOG0099|consen  356 NIRRVFNDCRDIIQRM  371 (379)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999887776654

>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]

Probab=98.45  E-value=2.2e-06  Score=63.17  Aligned_cols=90  Identities=18%  Similarity=0.173  Sum_probs=63.1

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhh-------ccchhhhccCC
Q 028300           14 SFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERF-------RTLTSSYYRGA   86 (211)
Q Consensus        14 ~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~-------~~~~~~~~~~~   86 (211)
                      ..++.++|-|.+||||++..+.+.. .+...-.+++...+...+....-++++.|+||.-+-       ........+.+
T Consensus        59 ~a~vg~vgFPSvGksTl~~~l~g~~-s~vasyefttl~~vpG~~~y~gaKiqlldlpgiiegakdgkgrg~qviavartc  137 (358)
T KOG1487|consen   59 DARVGFVGFPSVGKSTLLSKLTGTF-SEVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDGKGRGKQVIAVARTC  137 (358)
T ss_pred             ceeeeEEecCccchhhhhhhhcCCC-CccccccceeEEEecceEeccccceeeecCcchhcccccCCCCccEEEEEeecc
Confidence            3489999999999999999998654 333444445555444444445667899999994321       22345567888


Q ss_pred             cEEEEEEECCChhhHHHH
Q 028300           87 QGIILVYDVTRRETFTNL  104 (211)
Q Consensus        87 d~~i~v~d~~~~~s~~~~  104 (211)
                      ..+++|.|+-.|-+...+
T Consensus       138 nli~~vld~~kp~~hk~~  155 (358)
T KOG1487|consen  138 NLIFIVLDVLKPLSHKKI  155 (358)
T ss_pred             cEEEEEeeccCcccHHHH
Confidence            999999998887655444

>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]

Probab=98.44  E-value=3.9e-07  Score=72.92  Aligned_cols=61  Identities=20%  Similarity=0.298  Sum_probs=51.4

Q ss_pred             CCCceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCCh
Q 028300            9 NSYDLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQ   72 (211)
Q Consensus         9 ~~~~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~   72 (211)
                      ..+...+.|+++|-|||||||+||.|.+.+...+..|+|-+.+..++.+..   .+.|.|+||.
T Consensus       309 ~~~~~~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHFQTi~ls~---~v~LCDCPGL  369 (562)
T KOG1424|consen  309 ERYKDVVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKHFQTIFLSP---SVCLCDCPGL  369 (562)
T ss_pred             cCCCceeEEEeecCCCCchhHHHHHHhcCceeeeecCCCCcceeEEEEcCC---CceecCCCCc
Confidence            334447999999999999999999999999988889999888877776643   5788999993

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=98.44  E-value=4.4e-07  Score=68.00  Aligned_cols=57  Identities=30%  Similarity=0.374  Sum_probs=38.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCCCCCCCC-------ccceeeEEEEEEECCEEEEEEEEeCCChhhhc
Q 028300           16 KILLIGDSGVGKSSLLVSFISSSVDDLSP-------TIGVDFKIKLLTVAGKRLKLTIWDTAGQERFR   76 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~   76 (211)
                      .++++|.+|+|||||+|+|.+........       ...++.....+.+.+    ..++||||...+.
T Consensus       122 ~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l~~----~~liDtPG~~~~~  185 (245)
T TIGR00157       122 ISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHFHG----GLIADTPGFNEFG  185 (245)
T ss_pred             EEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEcCC----cEEEeCCCccccC
Confidence            68999999999999999999765322111       112455545555532    2689999976543

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=98.41  E-value=3.2e-05  Score=53.16  Aligned_cols=149  Identities=19%  Similarity=0.219  Sum_probs=76.3

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChh------------------
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQE------------------   73 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~------------------   73 (211)
                      ....||++.|+|||||||++.++...--.......|  +....+.-.+...-|.+.|+...+                  
T Consensus         3 ~~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgG--f~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~   80 (179)
T COG1618           3 KMAMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGG--FITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYG   80 (179)
T ss_pred             CcceEEEEeCCCCccHHHHHHHHHHHHHhcCceeee--EEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEE
Confidence            456899999999999999999887432111111111  222233334455566666665211                  


Q ss_pred             ----hhc----cchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHH
Q 028300           74 ----RFR----TLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIA  145 (211)
Q Consensus        74 ----~~~----~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~  145 (211)
                          .+.    ......+..+|++  ++|=-.+-  +.....+...+... ...+.|++.++.+.+-.+        ..+
T Consensus        81 V~v~~le~i~~~al~rA~~~aDvI--IIDEIGpM--Elks~~f~~~ve~v-l~~~kpliatlHrrsr~P--------~v~  147 (179)
T COG1618          81 VNVEGLEEIAIPALRRALEEADVI--IIDEIGPM--ELKSKKFREAVEEV-LKSGKPLIATLHRRSRHP--------LVQ  147 (179)
T ss_pred             eeHHHHHHHhHHHHHHHhhcCCEE--EEecccch--hhccHHHHHHHHHH-hcCCCcEEEEEecccCCh--------HHH
Confidence                001    1122233445654  44533332  22212244444433 345778777777665311        112


Q ss_pred             HHHHcCCeEEEeeccCCCcHHHHHHHHHHHHHh
Q 028300          146 LAKEHGSLFLECSAKTRENVEQCFEQLALKIME  178 (211)
Q Consensus       146 ~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~~~~  178 (211)
                      ..+..+-.|+.   .+..+-+.+++.|+..+..
T Consensus       148 ~ik~~~~v~v~---lt~~NR~~i~~~Il~~L~~  177 (179)
T COG1618         148 RIKKLGGVYVF---LTPENRNRILNEILSVLKG  177 (179)
T ss_pred             HhhhcCCEEEE---EccchhhHHHHHHHHHhcc
Confidence            23333433433   5666666888888876654

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=98.40  E-value=4.1e-07  Score=63.11  Aligned_cols=59  Identities=29%  Similarity=0.379  Sum_probs=34.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhhCCCCC---CC----CccceeeEEEEEEECCEEEEEEEEeCCChhhhc
Q 028300           15 FKILLIGDSGVGKSSLLVSFISSSVDD---LS----PTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFR   76 (211)
Q Consensus        15 ~~I~v~G~~~~GKssli~~l~~~~~~~---~~----~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~   76 (211)
                      -.++++|++|||||||+|.|.......   ..    .-..++.....+.++..   ..++||||...+.
T Consensus        36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~~g---~~iIDTPGf~~~~  101 (161)
T PF03193_consen   36 KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLPDG---GYIIDTPGFRSFG  101 (161)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEETTS---EEEECSHHHHT--
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecCCC---cEEEECCCCCccc
Confidence            368999999999999999999774311   11    11224444445555443   3678999976654

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=98.38  E-value=9.2e-07  Score=70.01  Aligned_cols=56  Identities=23%  Similarity=0.377  Sum_probs=42.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhhCCC-----CCCCCccceeeEEEEEEECCEEEEEEEEeCCChh
Q 028300           15 FKILLIGDSGVGKSSLLVSFISSSV-----DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQE   73 (211)
Q Consensus        15 ~~I~v~G~~~~GKssli~~l~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~   73 (211)
                      .+++++|.+|||||||+|+|++...     ......++++.....+.+..   .+.++||||..
T Consensus       155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~~~---~~~l~DtPG~~  215 (360)
T TIGR03597       155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPLDD---GHSLYDTPGII  215 (360)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEeCC---CCEEEECCCCC
Confidence            4899999999999999999997542     24556677777766666532   25799999954

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>PRK13796 GTPase YqeH; Provisional

Probab=98.38  E-value=6.4e-07  Score=70.99  Aligned_cols=56  Identities=21%  Similarity=0.268  Sum_probs=42.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhhCCC-----CCCCCccceeeEEEEEEECCEEEEEEEEeCCChh
Q 028300           15 FKILLIGDSGVGKSSLLVSFISSSV-----DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQE   73 (211)
Q Consensus        15 ~~I~v~G~~~~GKssli~~l~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~   73 (211)
                      .++.++|.+|||||||||+|.....     ....+.+|++.....+.+++.   ..++||||..
T Consensus       161 ~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~~---~~l~DTPGi~  221 (365)
T PRK13796        161 RDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDDG---SFLYDTPGII  221 (365)
T ss_pred             CeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCCC---cEEEECCCcc
Confidence            4799999999999999999986432     224566788887777766443   3789999953

>PRK01889 GTPase RsgA; Reviewed

Probab=98.38  E-value=2.1e-06  Score=67.78  Aligned_cols=85  Identities=15%  Similarity=0.100  Sum_probs=55.8

Q ss_pred             hccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccC
Q 028300           82 YYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKT  161 (211)
Q Consensus        82 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~  161 (211)
                      .+.++|.+++|+++..+-....+.. ++....    ..+++.+||+||+|+.+...........+  ..+.+++.+|+++
T Consensus       109 iaANvD~vliV~s~~p~~~~~~ldr-~L~~a~----~~~i~piIVLNK~DL~~~~~~~~~~~~~~--~~g~~Vi~vSa~~  181 (356)
T PRK01889        109 IAANVDTVFIVCSLNHDFNLRRIER-YLALAW----ESGAEPVIVLTKADLCEDAEEKIAEVEAL--APGVPVLAVSALD  181 (356)
T ss_pred             EEEeCCEEEEEEecCCCCChhHHHH-HHHHHH----HcCCCEEEEEEChhcCCCHHHHHHHHHHh--CCCCcEEEEECCC
Confidence            4688999999999974333222222 444333    34778899999999965311011111111  3467899999999


Q ss_pred             CCcHHHHHHHHH
Q 028300          162 RENVEQCFEQLA  173 (211)
Q Consensus       162 ~~gv~~l~~~i~  173 (211)
                      +.|++++..++.
T Consensus       182 g~gl~~L~~~L~  193 (356)
T PRK01889        182 GEGLDVLAAWLS  193 (356)
T ss_pred             CccHHHHHHHhh
Confidence            999999887764

>cd03112 CobW_like The function of this protein family is unkown

Probab=98.36  E-value=2.7e-06  Score=59.46  Aligned_cols=21  Identities=33%  Similarity=0.559  Sum_probs=19.0

Q ss_pred             EEEEcCCCCcHHHHHHHHhhC
Q 028300           17 ILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        17 I~v~G~~~~GKssli~~l~~~   37 (211)
                      +++.|..|+|||||++++...
T Consensus         3 ~~l~G~~GsGKTtl~~~l~~~   23 (158)
T cd03112           3 TVLTGFLGAGKTTLLNHILTE   23 (158)
T ss_pred             EEEEECCCCCHHHHHHHHHhc
Confidence            679999999999999998865

The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.

>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]

Probab=98.35  E-value=9e-07  Score=64.12  Aligned_cols=124  Identities=15%  Similarity=0.209  Sum_probs=78.5

Q ss_pred             EEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEEEEECCC----------hhhHHHHHHHHHHHhhhhccCCCccEE
Q 028300           55 LTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTR----------RETFTNLSDVWAKEVDLYSTNQDCVKM  124 (211)
Q Consensus        55 ~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~~~~p~v  124 (211)
                      +.++...+.+.+.|.+|+...+.-|.+++.+.-.+++++.+++          .+..++....+...+ .+.=-.+.+++
T Consensus       192 ypfdl~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi-~yPWF~nssVI  270 (359)
T KOG0085|consen  192 YPFDLQKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTII-TYPWFQNSSVI  270 (359)
T ss_pred             cCcchhhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHh-ccccccCCceE
Confidence            3445556778899999998888889999999888887777654          223444444233322 22223578999


Q ss_pred             EEeecCCCCCCcc----------------cCHHHHHHHHHH----cC-----CeE-EEeeccCCCcHHHHHHHHHHHHHh
Q 028300          125 LVGNKVDRDSERV----------------VSREEGIALAKE----HG-----SLF-LECSAKTRENVEQCFEQLALKIME  178 (211)
Q Consensus       125 iv~nK~Dl~~~~~----------------v~~~~~~~~~~~----~~-----~~~-~~~Sa~~~~gv~~l~~~i~~~~~~  178 (211)
                      +.+||.|+.+++.                -+...++.|..+    .+     +.| ..+-|.+..++.-+|..+...++.
T Consensus       271 lFLNKkDlLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaVkDtiLq  350 (359)
T KOG0085|consen  271 LFLNKKDLLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQ  350 (359)
T ss_pred             EEechhhhhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHHHHHHHH
Confidence            9999999855421                112223333322    11     122 446677788999999888777665


Q ss_pred             c
Q 028300          179 V  179 (211)
Q Consensus       179 ~  179 (211)
                      .
T Consensus       351 ~  351 (359)
T KOG0085|consen  351 L  351 (359)
T ss_pred             h
Confidence            4

>TIGR03348 VI_IcmF type VI secretion protein IcmF

Probab=98.35  E-value=8.1e-06  Score=73.82  Aligned_cols=114  Identities=16%  Similarity=0.118  Sum_probs=64.4

Q ss_pred             EEEEcCCCCcHHHHHHHHhhCCCCCCC-----Cc--cceeeEEEEEEECCEEEEEEEEeCCChh--------hhccchhh
Q 028300           17 ILLIGDSGVGKSSLLVSFISSSVDDLS-----PT--IGVDFKIKLLTVAGKRLKLTIWDTAGQE--------RFRTLTSS   81 (211)
Q Consensus        17 I~v~G~~~~GKssli~~l~~~~~~~~~-----~~--~~~~~~~~~~~~~~~~~~~~l~D~~g~~--------~~~~~~~~   81 (211)
                      .+|+|++|+||||++.+- +..++...     .+  .+.+.. ....+.+   .-.++|++|..        .....|..
T Consensus       114 YlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~-c~wwf~~---~avliDtaG~y~~~~~~~~~~~~~W~~  188 (1169)
T TIGR03348       114 YLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRN-CDWWFTD---EAVLIDTAGRYTTQDSDPEEDAAAWLG  188 (1169)
T ss_pred             EEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcc-cceEecC---CEEEEcCCCccccCCCcccccHHHHHH
Confidence            579999999999999987 34442211     11  111221 1222322   34588999921        11223444


Q ss_pred             hc---------cCCcEEEEEEECCChh-----hHHHHHHHHHHHhhhhc--cCCCccEEEEeecCCCCCC
Q 028300           82 YY---------RGAQGIILVYDVTRRE-----TFTNLSDVWAKEVDLYS--TNQDCVKMLVGNKVDRDSE  135 (211)
Q Consensus        82 ~~---------~~~d~~i~v~d~~~~~-----s~~~~~~~~~~~~~~~~--~~~~~p~viv~nK~Dl~~~  135 (211)
                      ++         +..+++|+++|+.+.-     ........++..+.+..  .....|+.+++||+|+...
T Consensus       189 fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dll~G  258 (1169)
T TIGR03348       189 FLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLLAG  258 (1169)
T ss_pred             HHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchhhcC
Confidence            33         3469999999977532     11111111333333221  2468999999999998643

Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.

>PRK13796 GTPase YqeH; Provisional

Probab=98.30  E-value=5.7e-06  Score=65.65  Aligned_cols=94  Identities=20%  Similarity=0.232  Sum_probs=60.5

Q ss_pred             hhhccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHH----HHHHH
Q 028300           73 ERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEG----IALAK  148 (211)
Q Consensus        73 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~----~~~~~  148 (211)
                      ++|.......-...+.+++|+|+.+...     . |...+..+  ..+.|+++|+||+|+.+. ....+..    ..++.
T Consensus        57 ~~~~~~l~~i~~~~~lIv~VVD~~D~~~-----s-~~~~L~~~--~~~kpviLViNK~DLl~~-~~~~~~i~~~l~~~~k  127 (365)
T PRK13796         57 DDFLKLLNGIGDSDALVVNVVDIFDFNG-----S-WIPGLHRF--VGNNPVLLVGNKADLLPK-SVKKNKVKNWLRQEAK  127 (365)
T ss_pred             HHHHHHHHhhcccCcEEEEEEECccCCC-----c-hhHHHHHH--hCCCCEEEEEEchhhCCC-ccCHHHHHHHHHHHHH
Confidence            3454444443333348999999987431     1 33444333  236799999999999643 2222232    23344


Q ss_pred             HcCC---eEEEeeccCCCcHHHHHHHHHHH
Q 028300          149 EHGS---LFLECSAKTRENVEQCFEQLALK  175 (211)
Q Consensus       149 ~~~~---~~~~~Sa~~~~gv~~l~~~i~~~  175 (211)
                      ..++   .++.+||+++.|++++++.|.+.
T Consensus       128 ~~g~~~~~v~~vSAk~g~gI~eL~~~I~~~  157 (365)
T PRK13796        128 ELGLRPVDVVLISAQKGHGIDELLEAIEKY  157 (365)
T ss_pred             hcCCCcCcEEEEECCCCCCHHHHHHHHHHh
Confidence            5565   58999999999999999998764

>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]

Probab=98.28  E-value=6.4e-07  Score=69.71  Aligned_cols=159  Identities=18%  Similarity=0.139  Sum_probs=98.1

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHhhCCC------------------------CC------CCCccceeeEEEEEEECCE
Q 028300           11 YDLSFKILLIGDSGVGKSSLLVSFISSSV------------------------DD------LSPTIGVDFKIKLLTVAGK   60 (211)
Q Consensus        11 ~~~~~~I~v~G~~~~GKssli~~l~~~~~------------------------~~------~~~~~~~~~~~~~~~~~~~   60 (211)
                      -...++++|+|...+||||+-.++....-                        ..      .....|.+...-...++..
T Consensus        76 pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte  155 (501)
T KOG0459|consen   76 PKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETE  155 (501)
T ss_pred             CCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEec
Confidence            35678999999999999999877651110                        00      0112233333344455556


Q ss_pred             EEEEEEEeCCChhhhccchhhhccCCcEEEEEEECCChh---hHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCc-
Q 028300           61 RLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRE---TFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSER-  136 (211)
Q Consensus        61 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~-  136 (211)
                      ...+++.|.||+..|-........++|.-++|+++.-.+   .|+.--+ -+..........-...++++||+|-+... 
T Consensus       156 ~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQ-TREha~Lakt~gv~~lVv~vNKMddPtvnW  234 (501)
T KOG0459|consen  156 NKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQ-TREHAMLAKTAGVKHLIVLINKMDDPTVNW  234 (501)
T ss_pred             ceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccc-hhHHHHHHHhhccceEEEEEEeccCCccCc
Confidence            678899999999998877777788999999999985432   1222111 11222222234456789999999964221 


Q ss_pred             -ccC----HHHHHHHHHHcC------CeEEEeeccCCCcHHHHHH
Q 028300          137 -VVS----REEGIALAKEHG------SLFLECSAKTRENVEQCFE  170 (211)
Q Consensus       137 -~v~----~~~~~~~~~~~~------~~~~~~Sa~~~~gv~~l~~  170 (211)
                       .-.    .+....+.+..+      ..|+++|..+|.++++...
T Consensus       235 s~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~  279 (501)
T KOG0459|consen  235 SNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD  279 (501)
T ss_pred             chhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc
Confidence             111    122233344333      3599999999999987654

>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]

Probab=98.28  E-value=1.3e-06  Score=71.26  Aligned_cols=119  Identities=18%  Similarity=0.223  Sum_probs=85.2

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhhCCC-----CC------------CCCccceeeEEEEEEECCEEEEEEEEeCCChhh
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFISSSV-----DD------------LSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER   74 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~~~~~-----~~------------~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~   74 (211)
                      .+--+|.+.-+-.+||||+-++++.-.-     ..            .....|.+.++......+.++.+.++|||||-+
T Consensus        37 ~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvD  116 (721)
T KOG0465|consen   37 NKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVD  116 (721)
T ss_pred             hhhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCcee
Confidence            4555788999999999999998863221     00            112335556655555666788999999999999


Q ss_pred             hccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCc
Q 028300           75 FRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSER  136 (211)
Q Consensus        75 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~  136 (211)
                      |.-.....++-.|+.++|++....-.-... ..|+++-     ..++|.+..+||+|.....
T Consensus       117 FT~EVeRALrVlDGaVlvl~aV~GVqsQt~-tV~rQ~~-----ry~vP~i~FiNKmDRmGa~  172 (721)
T KOG0465|consen  117 FTFEVERALRVLDGAVLVLDAVAGVESQTE-TVWRQMK-----RYNVPRICFINKMDRMGAS  172 (721)
T ss_pred             EEEEehhhhhhccCeEEEEEcccceehhhH-HHHHHHH-----hcCCCeEEEEehhhhcCCC
Confidence            988788888999999999997763222222 2266553     3489999999999976554

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=98.26  E-value=1.4e-05  Score=64.16  Aligned_cols=113  Identities=16%  Similarity=0.169  Sum_probs=61.3

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhh------CCC-----CCCCC-----------ccceeeEEEEEEEC------------
Q 028300           13 LSFKILLIGDSGVGKSSLLVSFIS------SSV-----DDLSP-----------TIGVDFKIKLLTVA------------   58 (211)
Q Consensus        13 ~~~~I~v~G~~~~GKssli~~l~~------~~~-----~~~~~-----------~~~~~~~~~~~~~~------------   58 (211)
                      .+-.|+++|++||||||++..|..      ...     +.+.+           ..+..+.......+            
T Consensus        99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~  178 (429)
T TIGR01425        99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKF  178 (429)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHH
Confidence            456899999999999999998862      111     11110           01111111000000            


Q ss_pred             -CEEEEEEEEeCCChhhhccch----hh--hccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCC
Q 028300           59 -GKRLKLTIWDTAGQERFRTLT----SS--YYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVD  131 (211)
Q Consensus        59 -~~~~~~~l~D~~g~~~~~~~~----~~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~D  131 (211)
                       ...+.+.|+||+|....+...    ..  ...++|-+++|+|+...+.-.+....+..        .-.+.-+|+||.|
T Consensus       179 ~~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a~~F~~--------~~~~~g~IlTKlD  250 (429)
T TIGR01425       179 KKENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQAKAFKD--------SVDVGSVIITKLD  250 (429)
T ss_pred             HhCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHHHHHHh--------ccCCcEEEEECcc
Confidence             024678999999954332111    11  12356889999998754322222111211        1235688999999


Q ss_pred             CC
Q 028300          132 RD  133 (211)
Q Consensus       132 l~  133 (211)
                      ..
T Consensus       251 ~~  252 (429)
T TIGR01425       251 GH  252 (429)
T ss_pred             CC
Confidence            74

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>PRK00098 GTPase RsgA; Reviewed

Probab=98.24  E-value=2.6e-06  Score=65.79  Aligned_cols=57  Identities=28%  Similarity=0.354  Sum_probs=37.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCCCCCCCCcc-------ceeeEEEEEEECCEEEEEEEEeCCChhhh
Q 028300           16 KILLIGDSGVGKSSLLVSFISSSVDDLSPTI-------GVDFKIKLLTVAGKRLKLTIWDTAGQERF   75 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~l~D~~g~~~~   75 (211)
                      .++++|++|+|||||+|.|.+..........       .++.....+.+...   ..++|+||...+
T Consensus       166 ~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~~~~---~~~~DtpG~~~~  229 (298)
T PRK00098        166 VTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDLPGG---GLLIDTPGFSSF  229 (298)
T ss_pred             eEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEcCCC---cEEEECCCcCcc
Confidence            6899999999999999999876542222211       13333344444332   367899997543

>cd01854 YjeQ_engC YjeQ/EngC

Probab=98.24  E-value=2.5e-06  Score=65.53  Aligned_cols=59  Identities=25%  Similarity=0.323  Sum_probs=38.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhhCCCCCCC-------CccceeeEEEEEEECCEEEEEEEEeCCChhhhc
Q 028300           15 FKILLIGDSGVGKSSLLVSFISSSVDDLS-------PTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFR   76 (211)
Q Consensus        15 ~~I~v~G~~~~GKssli~~l~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~   76 (211)
                      -.++++|++|+|||||+|.|.+.......       ....++.....+.+...   ..++|+||..++.
T Consensus       162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~---~~liDtPG~~~~~  227 (287)
T cd01854         162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGG---GLLIDTPGFREFG  227 (287)
T ss_pred             ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCC---CEEEECCCCCccC
Confidence            47899999999999999999976542111       11124444444444322   2589999986543

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>COG1162 Predicted GTPases [General function prediction only]

Probab=98.23  E-value=1.1e-05  Score=61.16  Aligned_cols=95  Identities=22%  Similarity=0.153  Sum_probs=67.9

Q ss_pred             ccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEE
Q 028300           76 RTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFL  155 (211)
Q Consensus        76 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~  155 (211)
                      ..+.+.-+.+.|-.++|+++.+|+--....+.++-..    ...++.-+|++||+|+.+......++.......++.+++
T Consensus        70 n~L~Rp~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~a----e~~gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~gy~v~  145 (301)
T COG1162          70 NVLIRPPVANNDQAIIVVSLVDPDFNTNLLDRYLVLA----EAGGIEPVIVLNKIDLLDDEEAAVKELLREYEDIGYPVL  145 (301)
T ss_pred             CceeCCcccccceEEEEEeccCCCCCHHHHHHHHHHH----HHcCCcEEEEEEccccCcchHHHHHHHHHHHHhCCeeEE
Confidence            3445556667888999999988865444444243333    345787789999999976655443455666777899999


Q ss_pred             EeeccCCCcHHHHHHHHHH
Q 028300          156 ECSAKTRENVEQCFEQLAL  174 (211)
Q Consensus       156 ~~Sa~~~~gv~~l~~~i~~  174 (211)
                      .+|++++.+++++.+.+..
T Consensus       146 ~~s~~~~~~~~~l~~~l~~  164 (301)
T COG1162         146 FVSAKNGDGLEELAELLAG  164 (301)
T ss_pred             EecCcCcccHHHHHHHhcC
Confidence            9999999999887766543

>KOG2484 consensus GTPase [General function prediction only]

Probab=98.22  E-value=1.6e-06  Score=67.46  Aligned_cols=60  Identities=23%  Similarity=0.372  Sum_probs=51.5

Q ss_pred             CCCceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCC
Q 028300            9 NSYDLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAG   71 (211)
Q Consensus         9 ~~~~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g   71 (211)
                      ..-...++++|+|-|++||||+||+|..........++|.+.....+.++.   .+.|.|.||
T Consensus       247 ~~lk~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGvT~smqeV~Ldk---~i~llDsPg  306 (435)
T KOG2484|consen  247 GELKTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGVTRSMQEVKLDK---KIRLLDSPG  306 (435)
T ss_pred             cccCcceEeeeecCCCCChhHHHHHHHHhccccCCCCccchhhhhheeccC---CceeccCCc
Confidence            445789999999999999999999999998888888899888776666543   688899999

>COG1162 Predicted GTPases [General function prediction only]

Probab=98.18  E-value=2.4e-06  Score=64.74  Aligned_cols=58  Identities=28%  Similarity=0.430  Sum_probs=39.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCCC---CCCC----CccceeeEEEEEEECCEEEEEEEEeCCChhhhc
Q 028300           16 KILLIGDSGVGKSSLLVSFISSSV---DDLS----PTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFR   76 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~~~---~~~~----~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~   76 (211)
                      ..+++|++|+|||||+|+|.....   .+..    .-..++.....+.+.+.+   .++||||..++.
T Consensus       166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG---~iiDTPGf~~~~  230 (301)
T COG1162         166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGG---WIIDTPGFRSLG  230 (301)
T ss_pred             eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCC---EEEeCCCCCccC
Confidence            568999999999999999986432   1111    222356666666665444   467999976655

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=98.18  E-value=1.4e-05  Score=56.79  Aligned_cols=83  Identities=17%  Similarity=0.200  Sum_probs=44.0

Q ss_pred             EEEEEEEeCCChhhhcc----chhhhc--cCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCC
Q 028300           61 RLKLTIWDTAGQERFRT----LTSSYY--RGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDS  134 (211)
Q Consensus        61 ~~~~~l~D~~g~~~~~~----~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~  134 (211)
                      ...+.++|++|......    ....+.  ...|.+++|++.......   .. +...+...   .+ ..-+|.||.|...
T Consensus        82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~~---~~-~~~~~~~~---~~-~~~viltk~D~~~  153 (173)
T cd03115          82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQDA---VN-QAKAFNEA---LG-ITGVILTKLDGDA  153 (173)
T ss_pred             CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChHH---HH-HHHHHHhh---CC-CCEEEEECCcCCC
Confidence            34578899999642211    111111  348999999998754322   22 22222111   12 3577889999743


Q ss_pred             CcccCHHHHHHHHHHcCCeEE
Q 028300          135 ERVVSREEGIALAKEHGSLFL  155 (211)
Q Consensus       135 ~~~v~~~~~~~~~~~~~~~~~  155 (211)
                      ..    ......+...++|+.
T Consensus       154 ~~----g~~~~~~~~~~~p~~  170 (173)
T cd03115         154 RG----GAALSIRAVTGKPIK  170 (173)
T ss_pred             Cc----chhhhhHHHHCcCeE
Confidence            22    122334555566653

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.13  E-value=1.9e-05  Score=62.36  Aligned_cols=143  Identities=14%  Similarity=0.103  Sum_probs=71.2

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhhCCC-C-CCCC-------c---------------cceeeEEEEEE-------ECCE
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFISSSV-D-DLSP-------T---------------IGVDFKIKLLT-------VAGK   60 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~~~~~-~-~~~~-------~---------------~~~~~~~~~~~-------~~~~   60 (211)
                      ...-.++++|++|+||||++..|..... . ....       +               .+.......-.       ....
T Consensus       135 ~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~  214 (374)
T PRK14722        135 ERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELR  214 (374)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhc
Confidence            3345788999999999999999875321 0 0000       0               01111100000       0012


Q ss_pred             EEEEEEEeCCChhhhccch----hh--hccCCcEEEEEEECCC-hhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCC
Q 028300           61 RLKLTIWDTAGQERFRTLT----SS--YYRGAQGIILVYDVTR-RETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRD  133 (211)
Q Consensus        61 ~~~~~l~D~~g~~~~~~~~----~~--~~~~~d~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~  133 (211)
                      +..+.++||+|....+...    ..  ......-.++|++++. .+.+.++...|......-......+--+|+||.|..
T Consensus       215 ~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDEt  294 (374)
T PRK14722        215 NKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEA  294 (374)
T ss_pred             CCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEeccccC
Confidence            4578899999955332221    11  1123345688999876 334444433232221100000011346888999964


Q ss_pred             CCcccCHHHHHHHHHHcCCeEEEee
Q 028300          134 SERVVSREEGIALAKEHGSLFLECS  158 (211)
Q Consensus       134 ~~~~v~~~~~~~~~~~~~~~~~~~S  158 (211)
                      ..    .-.+.......+.|+..++
T Consensus       295 ~~----~G~~l~~~~~~~lPi~yvt  315 (374)
T PRK14722        295 SN----LGGVLDTVIRYKLPVHYVS  315 (374)
T ss_pred             CC----ccHHHHHHHHHCcCeEEEe
Confidence            32    2234455556666655554

>cd03114 ArgK-like The function of this protein family is unkown

Probab=98.11  E-value=1.7e-05  Score=54.73  Aligned_cols=58  Identities=16%  Similarity=0.188  Sum_probs=35.9

Q ss_pred             EEEEEEEeCCChhhhccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCC
Q 028300           61 RLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVD  131 (211)
Q Consensus        61 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~D  131 (211)
                      .+.+.|+|++|....   ...++..+|-++++...+--+.+.-...   .++       ...-++++||+|
T Consensus        91 ~~D~iiIDtaG~~~~---~~~~~~~Ad~~ivv~tpe~~D~y~~~k~---~~~-------~~~~~~~~~k~~  148 (148)
T cd03114          91 GFDVIIVETVGVGQS---EVDIASMADTTVVVMAPGAGDDIQAIKA---GIM-------EIADIVVVNKAD  148 (148)
T ss_pred             CCCEEEEECCccChh---hhhHHHhCCEEEEEECCCchhHHHHhhh---hHh-------hhcCEEEEeCCC
Confidence            457889999885422   2347888999999988874333222221   111       122378899987

The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=98.08  E-value=2.2e-06  Score=62.02  Aligned_cols=85  Identities=18%  Similarity=0.167  Sum_probs=47.1

Q ss_pred             EEEEEEeCCChhhhccc----hhhh--ccCCcEEEEEEECCChhh-HHHHHHHHHHHhhhhccCCCccEEEEeecCCCCC
Q 028300           62 LKLTIWDTAGQERFRTL----TSSY--YRGAQGIILVYDVTRRET-FTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDS  134 (211)
Q Consensus        62 ~~~~l~D~~g~~~~~~~----~~~~--~~~~d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~  134 (211)
                      ..+.|+||+|.......    ...+  ....+-+++|++++.... +..+.. +...+       + +--+|+||.|...
T Consensus        84 ~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~-~~~~~-------~-~~~lIlTKlDet~  154 (196)
T PF00448_consen   84 YDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALA-FYEAF-------G-IDGLILTKLDETA  154 (196)
T ss_dssp             SSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHH-HHHHS-------S-TCEEEEESTTSSS
T ss_pred             CCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHH-Hhhcc-------c-CceEEEEeecCCC
Confidence            46899999995433211    1111  125788999999887543 333322 22221       1 2357799999633


Q ss_pred             CcccCHHHHHHHHHHcCCeEEEeec
Q 028300          135 ERVVSREEGIALAKEHGSLFLECSA  159 (211)
Q Consensus       135 ~~~v~~~~~~~~~~~~~~~~~~~Sa  159 (211)
                      .    .-.........+.|+-.++.
T Consensus       155 ~----~G~~l~~~~~~~~Pi~~it~  175 (196)
T PF00448_consen  155 R----LGALLSLAYESGLPISYITT  175 (196)
T ss_dssp             T----THHHHHHHHHHTSEEEEEES
T ss_pred             C----cccceeHHHHhCCCeEEEEC
Confidence            2    23345566677888666543

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>cd03110 Fer4_NifH_child This protein family's function is unkown

Probab=98.03  E-value=0.00022  Score=50.87  Aligned_cols=86  Identities=23%  Similarity=0.168  Sum_probs=57.4

Q ss_pred             EEEEEEEEeCCChhhhccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccC
Q 028300           60 KRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVS  139 (211)
Q Consensus        60 ~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~  139 (211)
                      ..+.+.++|+|+....  .....+..+|.+++++..+.. ++..+.. +...+...    +.|+.+|+||.|....   .
T Consensus        91 ~~~d~viiDtpp~~~~--~~~~~l~~aD~vliv~~~~~~-~~~~~~~-~~~~l~~~----~~~~~vV~N~~~~~~~---~  159 (179)
T cd03110          91 EGAELIIIDGPPGIGC--PVIASLTGADAALLVTEPTPS-GLHDLER-AVELVRHF----GIPVGVVINKYDLNDE---I  159 (179)
T ss_pred             cCCCEEEEECcCCCcH--HHHHHHHcCCEEEEEecCCcc-cHHHHHH-HHHHHHHc----CCCEEEEEeCCCCCcc---h
Confidence            4568899999975422  234566889999999998844 5555555 44444432    5678999999996432   2


Q ss_pred             HHHHHHHHHHcCCeEEE
Q 028300          140 REEGIALAKEHGSLFLE  156 (211)
Q Consensus       140 ~~~~~~~~~~~~~~~~~  156 (211)
                      ..+..++....+++++.
T Consensus       160 ~~~~~~~~~~~~~~vl~  176 (179)
T cd03110         160 AEEIEDYCEEEGIPILG  176 (179)
T ss_pred             HHHHHHHHHHcCCCeEE
Confidence            34556667777777643

It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=98.03  E-value=1.1e-05  Score=65.15  Aligned_cols=135  Identities=21%  Similarity=0.207  Sum_probs=69.5

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhhCC----C-------CCCCCc-----------cceeeEEEEEEE-----------C
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFISSS----V-------DDLSPT-----------IGVDFKIKLLTV-----------A   58 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~~~~----~-------~~~~~~-----------~~~~~~~~~~~~-----------~   58 (211)
                      ..+..|+++|++|+||||++..|...-    .       +.+.+.           .+..+.......           .
T Consensus        93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~  172 (437)
T PRK00771         93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEK  172 (437)
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHH
Confidence            356789999999999999998875211    0       111110           011111000000           0


Q ss_pred             CEEEEEEEEeCCChhhhccc----h--hhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCC
Q 028300           59 GKRLKLTIWDTAGQERFRTL----T--SSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDR  132 (211)
Q Consensus        59 ~~~~~~~l~D~~g~~~~~~~----~--~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl  132 (211)
                      .....+.++||+|.......    .  ...+..+|.+++|+|++...   +... ....+.   .. -...-+|+||.|.
T Consensus       173 ~~~~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq---~av~-~a~~F~---~~-l~i~gvIlTKlD~  244 (437)
T PRK00771        173 FKKADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ---QAKN-QAKAFH---EA-VGIGGIIITKLDG  244 (437)
T ss_pred             hhcCCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH---HHHH-HHHHHH---hc-CCCCEEEEecccC
Confidence            01237899999995443211    1  11234678999999987643   2211 111111   11 1134678899996


Q ss_pred             CCCcccCHHHHHHHHHHcCCeEEEee
Q 028300          133 DSERVVSREEGIALAKEHGSLFLECS  158 (211)
Q Consensus       133 ~~~~~v~~~~~~~~~~~~~~~~~~~S  158 (211)
                      ...-    -.+.......+.|+..++
T Consensus       245 ~a~~----G~~ls~~~~~~~Pi~fig  266 (437)
T PRK00771        245 TAKG----GGALSAVAETGAPIKFIG  266 (437)
T ss_pred             CCcc----cHHHHHHHHHCcCEEEEe
Confidence            3221    223444555666755543

>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]

Probab=98.02  E-value=4.7e-05  Score=56.86  Aligned_cols=119  Identities=25%  Similarity=0.331  Sum_probs=72.3

Q ss_pred             CCceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcc---ceeeEEEEEEE--CCEEEEEEEEeCCChh-------hhcc
Q 028300           10 SYDLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTI---GVDFKIKLLTV--AGKRLKLTIWDTAGQE-------RFRT   77 (211)
Q Consensus        10 ~~~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~---~~~~~~~~~~~--~~~~~~~~l~D~~g~~-------~~~~   77 (211)
                      ...-.++|.-+|..|.|||||+..|++..|.....+.   +......++.+  .+-..++++.||.|.-       .|..
T Consensus        38 ~~GF~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Syk~  117 (406)
T KOG3859|consen   38 SQGFCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDSYKP  117 (406)
T ss_pred             hcCceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcccccch
Confidence            3456789999999999999999999999984433322   22233223322  4556789999999821       1111


Q ss_pred             -----------chh-----------hhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCC
Q 028300           78 -----------LTS-----------SYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDS  134 (211)
Q Consensus        78 -----------~~~-----------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~  134 (211)
                                 ...           .--...++.+|.+..+.- ++..+....+..+.     .++-++-|+.|+|-..
T Consensus       118 iVdyidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH-~LKslDLvtmk~Ld-----skVNIIPvIAKaDtis  190 (406)
T KOG3859|consen  118 IVDYIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTGH-SLKSLDLVTMKKLD-----SKVNIIPVIAKADTIS  190 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCCc-chhHHHHHHHHHHh-----hhhhhHHHHHHhhhhh
Confidence                       111           111355788888887753 55555544444443     3444555666888543

>KOG4273 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.99  E-value=0.00022  Score=52.62  Aligned_cols=162  Identities=25%  Similarity=0.328  Sum_probs=94.8

Q ss_pred             eEEEEEcCCCC--cHHHHHHHHhhCCCC-CCCCccceeeEEEEEEECCE--EEEEEEEeCCChhhhccchhhhccCCcEE
Q 028300           15 FKILLIGDSGV--GKSSLLVSFISSSVD-DLSPTIGVDFKIKLLTVAGK--RLKLTIWDTAGQERFRTLTSSYYRGAQGI   89 (211)
Q Consensus        15 ~~I~v~G~~~~--GKssli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~~l~D~~g~~~~~~~~~~~~~~~d~~   89 (211)
                      ..++|+|-+|+  ||.+|+.+|...+|. .......+.++.-  ++++.  .-.+.+.=.+-.+++...........-++
T Consensus         5 p~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~hgw--tid~kyysadi~lcishicde~~lpn~~~a~pl~a~   82 (418)
T KOG4273|consen    5 PCALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFHGW--TIDNKYYSADINLCISHICDEKFLPNAEIAEPLQAF   82 (418)
T ss_pred             ceEEEecccccccchHHHHHHhcchhheeeccccCceeeece--EecceeeecceeEEeecccchhccCCcccccceeeE
Confidence            45789999998  999999999988883 3333333333322  22221  11122211111122221122223345789


Q ss_pred             EEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCC------------------c---------------
Q 028300           90 ILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSE------------------R---------------  136 (211)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~------------------~---------------  136 (211)
                      +.|||++....+..+.. |.+......  .. -.+-++||.|..+.                  +               
T Consensus        83 vmvfdlse~s~l~alqd-wl~htdins--fd-illcignkvdrvphhlahdeyrrrl~kasdpsrdl~~di~dfgisete  158 (418)
T KOG4273|consen   83 VMVFDLSEKSGLDALQD-WLPHTDINS--FD-ILLCIGNKVDRVPHHLAHDEYRRRLAKASDPSRDLMIDICDFGISETE  158 (418)
T ss_pred             EEEEeccchhhhHHHHh-hcccccccc--ch-hheecccccccccchhhhhHHHHHHHhhcCcchhHhhhhhhccccccc
Confidence            99999999988888888 887654331  11 23556788885221                  0               


Q ss_pred             --------c---cCHHHHHHHHHHcCCeEEEeeccC------------CCcHHHHHHHHHHHHHhccch
Q 028300          137 --------V---VSREEGIALAKEHGSLFLECSAKT------------RENVEQCFEQLALKIMEVPSL  182 (211)
Q Consensus       137 --------~---v~~~~~~~~~~~~~~~~~~~Sa~~------------~~gv~~l~~~i~~~~~~~~~~  182 (211)
                              .   .......+++.++++.+++.++.+            ..|++.+|..+...+....-.
T Consensus       159 gssllgsedasldirga~lewc~e~~~efieacasn~dfd~c~~~dgdsqgverifgal~ahmwpgmil  227 (418)
T KOG4273|consen  159 GSSLLGSEDASLDIRGAALEWCLEHGFEFIEACASNEDFDECDDDDGDSQGVERIFGALNAHMWPGMIL  227 (418)
T ss_pred             cccccccccchhhHHHHHHHHHHhcCceeeeecCCccccchhhccCcchhhHHHHHHHhhhccCcccee
Confidence                    0   111223455667788899988744            258999999888776655433

>PRK10867 signal recognition particle protein; Provisional

Probab=97.99  E-value=2.3e-05  Score=63.23  Aligned_cols=86  Identities=16%  Similarity=0.215  Sum_probs=45.7

Q ss_pred             EEEEEEEeCCChhhhcc-ch---hh--hccCCcEEEEEEECCChhhH-HHHHHHHHHHhhhhccCCCccEEEEeecCCCC
Q 028300           61 RLKLTIWDTAGQERFRT-LT---SS--YYRGAQGIILVYDVTRRETF-TNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRD  133 (211)
Q Consensus        61 ~~~~~l~D~~g~~~~~~-~~---~~--~~~~~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~  133 (211)
                      .+.+.|+||+|....+. +.   ..  ..-..+.+++|+|+...+.. +.+.. +...+       + ..-+|+||.|..
T Consensus       183 ~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~gq~av~~a~~-F~~~~-------~-i~giIlTKlD~~  253 (433)
T PRK10867        183 GYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTGQDAVNTAKA-FNEAL-------G-LTGVILTKLDGD  253 (433)
T ss_pred             CCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccHHHHHHHHHH-HHhhC-------C-CCEEEEeCccCc
Confidence            35689999999532211 11   11  11256788999998754322 22222 22111       1 236778999963


Q ss_pred             CCcccCHHHHHHHHHHcCCeEEEeec
Q 028300          134 SERVVSREEGIALAKEHGSLFLECSA  159 (211)
Q Consensus       134 ~~~~v~~~~~~~~~~~~~~~~~~~Sa  159 (211)
                      ...    -.+.......+.|+..+..
T Consensus       254 ~rg----G~alsi~~~~~~PI~fig~  275 (433)
T PRK10867        254 ARG----GAALSIRAVTGKPIKFIGT  275 (433)
T ss_pred             ccc----cHHHHHHHHHCcCEEEEeC
Confidence            322    1245555666777655543

>PRK13695 putative NTPase; Provisional

Probab=97.98  E-value=0.00041  Score=49.25  Aligned_cols=82  Identities=12%  Similarity=0.044  Sum_probs=43.2

Q ss_pred             hhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeecc
Q 028300           81 SYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAK  160 (211)
Q Consensus        81 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~  160 (211)
                      ..+..+++  +++|=-.+  .+.....+...+.... ..+.|++++.+|....       .....+..-.+..++++   
T Consensus        92 ~~l~~~~~--lllDE~~~--~e~~~~~~~~~l~~~~-~~~~~~i~v~h~~~~~-------~~~~~i~~~~~~~i~~~---  156 (174)
T PRK13695         92 RALEEADV--IIIDEIGK--MELKSPKFVKAVEEVL-DSEKPVIATLHRRSVH-------PFVQEIKSRPGGRVYEL---  156 (174)
T ss_pred             hccCCCCE--EEEECCCc--chhhhHHHHHHHHHHH-hCCCeEEEEECchhhH-------HHHHHHhccCCcEEEEE---
Confidence            34456666  67783111  1111121344444332 4578999999985421       11122233344556666   


Q ss_pred             CCCcHHHHHHHHHHHHH
Q 028300          161 TRENVEQCFEQLALKIM  177 (211)
Q Consensus       161 ~~~gv~~l~~~i~~~~~  177 (211)
                      +.++-+++.+.|++++.
T Consensus       157 ~~~~r~~~~~~~~~~~~  173 (174)
T PRK13695        157 TPENRDSLPFEILNRLK  173 (174)
T ss_pred             cchhhhhHHHHHHHHHh
Confidence            55666688888887654

>TIGR00959 ffh signal recognition particle protein

Probab=97.97  E-value=2e-05  Score=63.51  Aligned_cols=87  Identities=18%  Similarity=0.182  Sum_probs=47.5

Q ss_pred             EEEEEEEeCCChhhhccc-hh-----hhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCC
Q 028300           61 RLKLTIWDTAGQERFRTL-TS-----SYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDS  134 (211)
Q Consensus        61 ~~~~~l~D~~g~~~~~~~-~~-----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~  134 (211)
                      .+.+.|+||+|....+.. ..     ...-+.|.+++|+|+...+   +... +...+...   -+ ..-+|.||.|...
T Consensus       182 ~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq---~~~~-~a~~f~~~---v~-i~giIlTKlD~~~  253 (428)
T TIGR00959       182 GFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQ---DAVN-TAKTFNER---LG-LTGVVLTKLDGDA  253 (428)
T ss_pred             CCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccchH---HHHH-HHHHHHhh---CC-CCEEEEeCccCcc
Confidence            356899999995332211 11     1123578899999987543   2222 22222211   11 3467899999632


Q ss_pred             CcccCHHHHHHHHHHcCCeEEEeec
Q 028300          135 ERVVSREEGIALAKEHGSLFLECSA  159 (211)
Q Consensus       135 ~~~v~~~~~~~~~~~~~~~~~~~Sa  159 (211)
                      ..    -.+.......++|+..+..
T Consensus       254 ~~----G~~lsi~~~~~~PI~fi~~  274 (428)
T TIGR00959       254 RG----GAALSVRSVTGKPIKFIGV  274 (428)
T ss_pred             cc----cHHHHHHHHHCcCEEEEeC
Confidence            21    1245566667777655543

This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.

>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.95  E-value=3.6e-05  Score=68.50  Aligned_cols=111  Identities=23%  Similarity=0.162  Sum_probs=61.6

Q ss_pred             EEEcCCCCcHHHHHHHHhhCCCCCC-------CCccceeeEEEEEEECCEEEEEEEEeCCC----hh----hhccchhhh
Q 028300           18 LLIGDSGVGKSSLLVSFISSSVDDL-------SPTIGVDFKIKLLTVAGKRLKLTIWDTAG----QE----RFRTLTSSY   82 (211)
Q Consensus        18 ~v~G~~~~GKssli~~l~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~l~D~~g----~~----~~~~~~~~~   82 (211)
                      +|+|++|+||||++..-. ..|+..       ....+ +.... ..+   +-.-.++||.|    ++    .....|..+
T Consensus       129 ~viG~pgsGKTtal~~sg-l~Fpl~~~~~~~~~~~~g-T~~cd-wwf---~deaVlIDtaGry~~q~s~~~~~~~~W~~f  202 (1188)
T COG3523         129 MVIGPPGSGKTTALLNSG-LQFPLAEQMGALGLAGPG-TRNCD-WWF---TDEAVLIDTAGRYITQDSADEVDRAEWLGF  202 (1188)
T ss_pred             EEecCCCCCcchHHhccc-ccCcchhhhccccccCCC-CcccC-ccc---ccceEEEcCCcceecccCcchhhHHHHHHH
Confidence            689999999999988543 333111       11112 11111 111   22456789888    21    122334433


Q ss_pred             ---------ccCCcEEEEEEECCCh-----hhHHHHHHHHHH---HhhhhccCCCccEEEEeecCCCCCC
Q 028300           83 ---------YRGAQGIILVYDVTRR-----ETFTNLSDVWAK---EVDLYSTNQDCVKMLVGNKVDRDSE  135 (211)
Q Consensus        83 ---------~~~~d~~i~v~d~~~~-----~s~~~~~~~~~~---~~~~~~~~~~~p~viv~nK~Dl~~~  135 (211)
                               .+..+++|+.+|+.+.     ..-+.....++.   ++... ..-..|+++++||.|+...
T Consensus       203 L~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~t-L~~~~PVYl~lTk~Dll~G  271 (1188)
T COG3523         203 LGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRET-LHARLPVYLVLTKADLLPG  271 (1188)
T ss_pred             HHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHh-hccCCceEEEEeccccccc
Confidence                     2456999999997652     212122211333   33332 3567899999999998653

>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.94  E-value=2.8e-05  Score=62.39  Aligned_cols=153  Identities=15%  Similarity=0.173  Sum_probs=77.0

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhhCCC-----CC----CCC---------------ccceeeEEEEEE-------ECCEE
Q 028300           13 LSFKILLIGDSGVGKSSLLVSFISSSV-----DD----LSP---------------TIGVDFKIKLLT-------VAGKR   61 (211)
Q Consensus        13 ~~~~I~v~G~~~~GKssli~~l~~~~~-----~~----~~~---------------~~~~~~~~~~~~-------~~~~~   61 (211)
                      ..-+|+++|+.|+||||++..|.+...     ..    ...               ..+.......-.       ....+
T Consensus       190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~~  269 (420)
T PRK14721        190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELRG  269 (420)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhcC
Confidence            345899999999999999998865311     00    000               001111000000       00123


Q ss_pred             EEEEEEeCCChhhhc----cchhhh--ccCCcEEEEEEECCC-hhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCC
Q 028300           62 LKLTIWDTAGQERFR----TLTSSY--YRGAQGIILVYDVTR-RETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDS  134 (211)
Q Consensus        62 ~~~~l~D~~g~~~~~----~~~~~~--~~~~d~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~  134 (211)
                      ..+.++||+|.....    .....+  .....-.++|+|++. .+.+.++..    ...     .--+--+|+||.|...
T Consensus       270 ~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~~~~----~f~-----~~~~~~~I~TKlDEt~  340 (420)
T PRK14721        270 KHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEVIS----AYQ-----GHGIHGCIITKVDEAA  340 (420)
T ss_pred             CCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHHHHH----Hhc-----CCCCCEEEEEeeeCCC
Confidence            467899999944321    111222  123456789999884 433443332    111     1223468899999643


Q ss_pred             CcccCHHHHHHHHHHcCCeEEEeeccCC--CcHHHH-HHHHHHHHHh
Q 028300          135 ERVVSREEGIALAKEHGSLFLECSAKTR--ENVEQC-FEQLALKIME  178 (211)
Q Consensus       135 ~~~v~~~~~~~~~~~~~~~~~~~Sa~~~--~gv~~l-~~~i~~~~~~  178 (211)
                      .    .-.+.......+.|+..++.=.+  +++... -..+.+.++.
T Consensus       341 ~----~G~~l~~~~~~~lPi~yvt~Gq~VP~Dl~~a~~~~lv~~ll~  383 (420)
T PRK14721        341 S----LGIALDAVIRRKLVLHYVTNGQKVPEDLHEANSRYLLHRIFK  383 (420)
T ss_pred             C----ccHHHHHHHHhCCCEEEEECCCCchhhhhhCCHHHHHHHHhc
Confidence            2    22344556666777655543222  222221 2445555555

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.86  E-value=0.00013  Score=60.01  Aligned_cols=136  Identities=17%  Similarity=0.221  Sum_probs=69.0

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhhCC--------C-----CCCCC-----------ccceeeEEEEEE------E-CCE
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFISSS--------V-----DDLSP-----------TIGVDFKIKLLT------V-AGK   60 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~~~~--------~-----~~~~~-----------~~~~~~~~~~~~------~-~~~   60 (211)
                      +..-.|+|+|+.|+||||++..|...-        .     +.+..           ..+..+....-.      + ...
T Consensus       348 ~~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~  427 (559)
T PRK12727        348 ERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLR  427 (559)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhc
Confidence            344588999999999999998886421        1     00000           011111100000      0 012


Q ss_pred             EEEEEEEeCCChhhhccchhh---hc--cCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCC
Q 028300           61 RLKLTIWDTAGQERFRTLTSS---YY--RGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSE  135 (211)
Q Consensus        61 ~~~~~l~D~~g~~~~~~~~~~---~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~  135 (211)
                      .+.+.|+|++|....+.....   .+  ......++|++.+..  ..++.. ....+..     ..+.-+|+||.|... 
T Consensus       428 ~~DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAtss--~~Dl~e-ii~~f~~-----~~~~gvILTKlDEt~-  498 (559)
T PRK12727        428 DYKLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANAH--FSDLDE-VVRRFAH-----AKPQGVVLTKLDETG-  498 (559)
T ss_pred             cCCEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCCC--hhHHHH-HHHHHHh-----hCCeEEEEecCcCcc-
Confidence            467899999995432211100   01  012346677776642  223222 2222211     245679999999632 


Q ss_pred             cccCHHHHHHHHHHcCCeEEEeec
Q 028300          136 RVVSREEGIALAKEHGSLFLECSA  159 (211)
Q Consensus       136 ~~v~~~~~~~~~~~~~~~~~~~Sa  159 (211)
                         ..-.+.......+.|+..++.
T Consensus       499 ---~lG~aLsv~~~~~LPI~yvt~  519 (559)
T PRK12727        499 ---RFGSALSVVVDHQMPITWVTD  519 (559)
T ss_pred             ---chhHHHHHHHHhCCCEEEEeC
Confidence               223445556667777655543

>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []

Probab=97.86  E-value=3.9e-05  Score=54.11  Aligned_cols=135  Identities=20%  Similarity=0.272  Sum_probs=62.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeC-CCh----------------------
Q 028300           16 KILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDT-AGQ----------------------   72 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~-~g~----------------------   72 (211)
                      +|.+.|++|+|||||+++++..-.....+..|.  .+..+.-.+...-+.+.|+ .|.                      
T Consensus         1 ~i~iTG~pG~GKTTll~k~i~~l~~~~~~v~Gf--~t~evr~~g~r~GF~iv~l~~g~~~~la~~~~~~~~~vgky~v~~   78 (168)
T PF03266_consen    1 HIFITGPPGVGKTTLLKKVIEELKKKGLPVGGF--YTEEVRENGRRIGFDIVDLNSGEEAILARVDFRSGPRVGKYFVDL   78 (168)
T ss_dssp             EEEEES-TTSSHHHHHHHHHHHHHHTCGGEEEE--EEEEEETTSSEEEEEEEET-TS-EEEEEETTSS-SCECTTCEE-H
T ss_pred             CEEEECcCCCCHHHHHHHHHHHhhccCCccceE--EeecccCCCceEEEEEEECcCCCccccccccccccccCCCEEEcH
Confidence            689999999999999999885432221222222  2222223344444555555 220                      


Q ss_pred             hhhccchhhhc----cCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecC-CCCCCcccCHHHHHHHH
Q 028300           73 ERFRTLTSSYY----RGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKV-DRDSERVVSREEGIALA  147 (211)
Q Consensus        73 ~~~~~~~~~~~----~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~-Dl~~~~~v~~~~~~~~~  147 (211)
                      +.+.......+    ..+|  ++|+|=--+--  .....|.+.+... -..++|++.++-+. +..        ....+.
T Consensus        79 e~fe~~~~~~L~~~~~~~~--liviDEIG~mE--l~~~~F~~~v~~~-l~s~~~vi~vv~~~~~~~--------~l~~i~  145 (168)
T PF03266_consen   79 ESFEEIGLPALRNALSSSD--LIVIDEIGKME--LKSPGFREAVEKL-LDSNKPVIGVVHKRSDNP--------FLEEIK  145 (168)
T ss_dssp             HHHHCCCCCCCHHHHHCCH--EEEE---STTC--CC-CHHHHHHHHH-HCTTSEEEEE--SS--SC--------CHHHHH
T ss_pred             HHHHHHHHHHHHhhcCCCC--EEEEeccchhh--hcCHHHHHHHHHH-HcCCCcEEEEEecCCCcH--------HHHHHH
Confidence            11222111122    3445  77888222110  0000133333332 23678888877776 321        122334


Q ss_pred             HHcCCeEEEeeccCCCcH
Q 028300          148 KEHGSLFLECSAKTRENV  165 (211)
Q Consensus       148 ~~~~~~~~~~Sa~~~~gv  165 (211)
                      ...++.+++++..+.+-+
T Consensus       146 ~~~~~~i~~vt~~NRd~l  163 (168)
T PF03266_consen  146 RRPDVKIFEVTEENRDAL  163 (168)
T ss_dssp             TTTTSEEEE--TTTCCCH
T ss_pred             hCCCcEEEEeChhHHhhH
Confidence            445678888887776665

It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.

>COG0523 Putative GTPases (G3E family) [General function prediction only]

Probab=97.86  E-value=0.00034  Score=54.43  Aligned_cols=98  Identities=13%  Similarity=0.142  Sum_probs=53.9

Q ss_pred             EEEEEEeCCChhhhccchhhhcc--------CCcEEEEEEECCChhhHHH-HHHHHHHHhhhhccCCCccEEEEeecCCC
Q 028300           62 LKLTIWDTAGQERFRTLTSSYYR--------GAQGIILVYDVTRRETFTN-LSDVWAKEVDLYSTNQDCVKMLVGNKVDR  132 (211)
Q Consensus        62 ~~~~l~D~~g~~~~~~~~~~~~~--------~~d~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~~p~viv~nK~Dl  132 (211)
                      +...++++.|...-......+..        ..|+++-|+|+..-..... ........+..       .=+|++||+|+
T Consensus        85 ~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~-------AD~ivlNK~Dl  157 (323)
T COG0523          85 PDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAF-------ADVIVLNKTDL  157 (323)
T ss_pred             CCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHh-------CcEEEEecccC
Confidence            45567788885544332222222        3488999999887433222 22323333321       12899999999


Q ss_pred             CCCcccCHHHHHHHHHHc--CCeEEEeeccCCCcHHHHH
Q 028300          133 DSERVVSREEGIALAKEH--GSLFLECSAKTRENVEQCF  169 (211)
Q Consensus       133 ~~~~~v~~~~~~~~~~~~--~~~~~~~Sa~~~~gv~~l~  169 (211)
                      .+...  ....+...++.  .++++.++. .+.+..+++
T Consensus       158 v~~~~--l~~l~~~l~~lnp~A~i~~~~~-~~~~~~~ll  193 (323)
T COG0523         158 VDAEE--LEALEARLRKLNPRARIIETSY-GDVDLAELL  193 (323)
T ss_pred             CCHHH--HHHHHHHHHHhCCCCeEEEccc-cCCCHHHhh
Confidence            77654  33334444444  367888777 444444333

>PRK11537 putative GTP-binding protein YjiA; Provisional

Probab=97.86  E-value=0.00019  Score=55.87  Aligned_cols=86  Identities=12%  Similarity=0.127  Sum_probs=44.9

Q ss_pred             EEEEEEeCCChhhhccchhhhcc--------CCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCC
Q 028300           62 LKLTIWDTAGQERFRTLTSSYYR--------GAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRD  133 (211)
Q Consensus        62 ~~~~l~D~~g~~~~~~~~~~~~~--------~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~  133 (211)
                      ....++++.|..+...+...+..        ..++++.|+|+.+-.....-.......+..       .=+|++||+|+.
T Consensus        91 ~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~~-------AD~IvlnK~Dl~  163 (318)
T PRK11537         91 FDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGY-------ADRILLTKTDVA  163 (318)
T ss_pred             CCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHHh-------CCEEEEeccccC
Confidence            45577888886554443333221        248899999987532211111111111211       128999999986


Q ss_pred             CCcccCHHHHHHHHHHc--CCeEEEee
Q 028300          134 SERVVSREEGIALAKEH--GSLFLECS  158 (211)
Q Consensus       134 ~~~~v~~~~~~~~~~~~--~~~~~~~S  158 (211)
                      .+.    +......+..  .++++.++
T Consensus       164 ~~~----~~~~~~l~~lnp~a~i~~~~  186 (318)
T PRK11537        164 GEA----EKLRERLARINARAPVYTVV  186 (318)
T ss_pred             CHH----HHHHHHHHHhCCCCEEEEec
Confidence            532    3344444443  35666554

>KOG2423 consensus Nucleolar GTPase [General function prediction only]

Probab=97.86  E-value=5.6e-06  Score=64.57  Aligned_cols=85  Identities=22%  Similarity=0.268  Sum_probs=58.1

Q ss_pred             CCceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhh--ccchhhhccCCc
Q 028300           10 SYDLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERF--RTLTSSYYRGAQ   87 (211)
Q Consensus        10 ~~~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~--~~~~~~~~~~~d   87 (211)
                      +....+.|+++|-|++||||+||.|.........|.+|.+-....+++   ...+-|+|+||.--.  ++.....+   -
T Consensus       303 ~dkkqISVGfiGYPNvGKSSiINTLR~KkVCkvAPIpGETKVWQYItL---mkrIfLIDcPGvVyps~dset~ivL---k  376 (572)
T KOG2423|consen  303 SDKKQISVGFIGYPNVGKSSIINTLRKKKVCKVAPIPGETKVWQYITL---MKRIFLIDCPGVVYPSSDSETDIVL---K  376 (572)
T ss_pred             cCccceeeeeecCCCCchHHHHHHHhhcccccccCCCCcchHHHHHHH---HhceeEecCCCccCCCCCchHHHHh---h
Confidence            346789999999999999999999999999888898887654333332   235678899993211  12222222   3


Q ss_pred             EEEEEEECCChhh
Q 028300           88 GIILVYDVTRRET  100 (211)
Q Consensus        88 ~~i~v~d~~~~~s  100 (211)
                      +++-|=.+.+++.
T Consensus       377 GvVRVenv~~pe~  389 (572)
T KOG2423|consen  377 GVVRVENVKNPED  389 (572)
T ss_pred             ceeeeeecCCHHH
Confidence            4566666666653

>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain

Probab=97.78  E-value=0.00021  Score=45.13  Aligned_cols=97  Identities=19%  Similarity=0.131  Sum_probs=55.8

Q ss_pred             EEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccc-hhhhccCCcEEEEEEEC
Q 028300           17 ILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTL-TSSYYRGAQGIILVYDV   95 (211)
Q Consensus        17 I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~-~~~~~~~~d~~i~v~d~   95 (211)
                      +++.|..|+||||+...+...-..     .+...    ..++    .+.++|+++....... .......+|.++++++.
T Consensus         2 ~~~~g~~G~Gktt~~~~l~~~l~~-----~g~~v----~~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~~   68 (99)
T cd01983           2 IVVTGKGGVGKTTLAANLAAALAK-----RGKRV----LLID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTTP   68 (99)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHH-----CCCeE----EEEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecCC
Confidence            678899999999999988754221     11111    1222    6888999986433221 24566778999999987


Q ss_pred             CChhhHHHHHHHHHHHhhhhccCCCccEEEEee
Q 028300           96 TRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGN  128 (211)
Q Consensus        96 ~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~n  128 (211)
                      +... ......... ...........+..++.|
T Consensus        69 ~~~~-~~~~~~~~~-~~~~~~~~~~~~~~vv~N   99 (99)
T cd01983          69 EALA-VLGARRLTE-VVLELAIEGLRPVGVVVN   99 (99)
T ss_pred             chhh-HHHHHHHHH-HHHHhhccCCceEEEEeC
Confidence            7653 333333121 122222334555555544

Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.

>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]

Probab=97.76  E-value=4.8e-05  Score=57.68  Aligned_cols=61  Identities=20%  Similarity=0.409  Sum_probs=44.6

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHhhCCC-----CCCCCccceeeEEEE-EEECCEEEEEEEEeCCCh
Q 028300           11 YDLSFKILLIGDSGVGKSSLLVSFISSSV-----DDLSPTIGVDFKIKL-LTVAGKRLKLTIWDTAGQ   72 (211)
Q Consensus        11 ~~~~~~I~v~G~~~~GKssli~~l~~~~~-----~~~~~~~~~~~~~~~-~~~~~~~~~~~l~D~~g~   72 (211)
                      ...++++.|+|-||+|||||||++.....     ..+...+|.+..... +.+.++. .+.+.||||.
T Consensus       140 ~~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp-~vy~iDTPGi  206 (335)
T KOG2485|consen  140 LNSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRP-PVYLIDTPGI  206 (335)
T ss_pred             cCCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccCC-ceEEecCCCc
Confidence            56789999999999999999998865442     445566676665544 5554444 3778899994

>PRK12726 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.74  E-value=0.00024  Score=56.15  Aligned_cols=136  Identities=15%  Similarity=0.176  Sum_probs=69.3

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhhCCC-----------CCCCC-----------ccceeeEEEEE--E-------EC-C
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFISSSV-----------DDLSP-----------TIGVDFKIKLL--T-------VA-G   59 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~~~~~-----------~~~~~-----------~~~~~~~~~~~--~-------~~-~   59 (211)
                      ...-.|+++|+.|+||||++..+...-.           +.+..           ..+..+....-  .       .. .
T Consensus       204 ~~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~~  283 (407)
T PRK12726        204 SNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTYV  283 (407)
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHhc
Confidence            4455789999999999999998863210           11110           01111110000  0       00 0


Q ss_pred             EEEEEEEEeCCChhhhccc----hhhhc--cCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCC
Q 028300           60 KRLKLTIWDTAGQERFRTL----TSSYY--RGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRD  133 (211)
Q Consensus        60 ~~~~~~l~D~~g~~~~~~~----~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~  133 (211)
                      ....+.|+||+|.......    ...+.  .+.+.+++|.++...  ..++.. +   +..+  ..-.+--+|+||.|..
T Consensus       284 ~~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~~--~~d~~~-i---~~~f--~~l~i~glI~TKLDET  355 (407)
T PRK12726        284 NCVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGMK--SADVMT-I---LPKL--AEIPIDGFIITKMDET  355 (407)
T ss_pred             CCCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCccc--HHHHHH-H---HHhc--CcCCCCEEEEEcccCC
Confidence            2357899999996432211    11122  244666777776432  222222 2   2212  1122446789999964


Q ss_pred             CCcccCHHHHHHHHHHcCCeEEEeec
Q 028300          134 SERVVSREEGIALAKEHGSLFLECSA  159 (211)
Q Consensus       134 ~~~~v~~~~~~~~~~~~~~~~~~~Sa  159 (211)
                      ..    .-.+.......+.|+..++.
T Consensus       356 ~~----~G~~Lsv~~~tglPIsylt~  377 (407)
T PRK12726        356 TR----IGDLYTVMQETNLPVLYMTD  377 (407)
T ss_pred             CC----ccHHHHHHHHHCCCEEEEec
Confidence            22    22345556677777666554

>PRK14738 gmk guanylate kinase; Provisional

Probab=97.68  E-value=5.5e-05  Score=55.29  Aligned_cols=37  Identities=22%  Similarity=0.275  Sum_probs=26.2

Q ss_pred             CCCCCCCCCCCceeeEEEEEcCCCCcHHHHHHHHhhCC
Q 028300            1 MGSSSGQSNSYDLSFKILLIGDSGVGKSSLLVSFISSS   38 (211)
Q Consensus         1 ~~~~~~~~~~~~~~~~I~v~G~~~~GKssli~~l~~~~   38 (211)
                      |+.+..-+... ...-|+|+|++|+|||||++.|....
T Consensus         1 ~~~~~~~~~~~-~~~~ivi~GpsG~GK~tl~~~L~~~~   37 (206)
T PRK14738          1 MMNPWLFNKPA-KPLLVVISGPSGVGKDAVLARMRERK   37 (206)
T ss_pred             CCCccccCCCC-CCeEEEEECcCCCCHHHHHHHHHhcC
Confidence            44444444444 44568889999999999999997543

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.68  E-value=0.0003  Score=57.01  Aligned_cols=106  Identities=17%  Similarity=0.197  Sum_probs=55.6

Q ss_pred             EEEEEEEeCCChhhhc----cchhhhcc---CCcEEEEEEECCCh-hhHHHHHHHHHHHhhhhccCCCccEEEEeecCCC
Q 028300           61 RLKLTIWDTAGQERFR----TLTSSYYR---GAQGIILVYDVTRR-ETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDR  132 (211)
Q Consensus        61 ~~~~~l~D~~g~~~~~----~~~~~~~~---~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl  132 (211)
                      ...+.|+|++|.....    .....++.   ...-.++|++++.. ..+..+..    .+.    ..+ +--+|+||.|.
T Consensus       299 ~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~~~----~f~----~~~-~~~vI~TKlDe  369 (424)
T PRK05703        299 DCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYEDLKDIYK----HFS----RLP-LDGLIFTKLDE  369 (424)
T ss_pred             CCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHHHHH----HhC----CCC-CCEEEEecccc
Confidence            3578999999954332    11223333   33567788887653 33333322    111    112 23688999996


Q ss_pred             CCCcccCHHHHHHHHHHcCCeEEEeeccCC--CcHHHH-HHHHHHHHHhc
Q 028300          133 DSERVVSREEGIALAKEHGSLFLECSAKTR--ENVEQC-FEQLALKIMEV  179 (211)
Q Consensus       133 ~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~--~gv~~l-~~~i~~~~~~~  179 (211)
                      ...    .-.+..+....+.|+..++.=.+  +++... -.++.+.++..
T Consensus       370 t~~----~G~i~~~~~~~~lPv~yit~Gq~VpdDl~~a~~~~l~~~ll~~  415 (424)
T PRK05703        370 TSS----LGSILSLLIESGLPISYLTNGQRVPDDIKVANPEELVRLLLGG  415 (424)
T ss_pred             ccc----ccHHHHHHHHHCCCEEEEeCCCCChhhhhhCCHHHHHHHHhcc
Confidence            332    22456667777888766654332  233221 13455555543

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.68  E-value=4.8e-05  Score=60.80  Aligned_cols=142  Identities=18%  Similarity=0.208  Sum_probs=72.9

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhhCCC-C-----------CCC-----------CccceeeEEEE-E-----EECCEEEEE
Q 028300           14 SFKILLIGDSGVGKSSLLVSFISSSV-D-----------DLS-----------PTIGVDFKIKL-L-----TVAGKRLKL   64 (211)
Q Consensus        14 ~~~I~v~G~~~~GKssli~~l~~~~~-~-----------~~~-----------~~~~~~~~~~~-~-----~~~~~~~~~   64 (211)
                      ...|+++|++||||||++.+|..... .           .+.           ...+....... .     .+......+
T Consensus       223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~  302 (432)
T PRK12724        223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSEL  302 (432)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCE
Confidence            34688999999999999999874220 0           000           01111111000 0     001124577


Q ss_pred             EEEeCCChhhhc----cchhhhcc-----CCcEEEEEEECCChh-hHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCC
Q 028300           65 TIWDTAGQERFR----TLTSSYYR-----GAQGIILVYDVTRRE-TFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDS  134 (211)
Q Consensus        65 ~l~D~~g~~~~~----~~~~~~~~-----~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~  134 (211)
                      .++||+|.....    ..+..+++     ...-.++|+|++... ....+..    ...     .--+--+|+||.|...
T Consensus       303 VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~~----~f~-----~~~~~glIlTKLDEt~  373 (432)
T PRK12724        303 ILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLK----AYE-----SLNYRRILLTKLDEAD  373 (432)
T ss_pred             EEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHHH----Hhc-----CCCCCEEEEEcccCCC
Confidence            899999954211    11122221     234678899988643 3333332    111     1123468899999643


Q ss_pred             CcccCHHHHHHHHHHcCCeEEEeec--cCCCcHHHH
Q 028300          135 ERVVSREEGIALAKEHGSLFLECSA--KTRENVEQC  168 (211)
Q Consensus       135 ~~~v~~~~~~~~~~~~~~~~~~~Sa--~~~~gv~~l  168 (211)
                      .    .-.+.......+.|+..++.  .-.+++...
T Consensus       374 ~----~G~il~i~~~~~lPI~ylt~GQ~VPeDi~~A  405 (432)
T PRK12724        374 F----LGSFLELADTYSKSFTYLSVGQEVPFDILNA  405 (432)
T ss_pred             C----ccHHHHHHHHHCCCEEEEecCCCCCCCHHHh
Confidence            2    12245556666777655543  334455443

>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1)

Probab=97.67  E-value=0.00022  Score=40.16  Aligned_cols=45  Identities=20%  Similarity=0.227  Sum_probs=27.4

Q ss_pred             cCCcEEEEEEECCChh--hHHHHHHHHHHHhhhhccCCCccEEEEeecCC
Q 028300           84 RGAQGIILVYDVTRRE--TFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVD  131 (211)
Q Consensus        84 ~~~d~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~D  131 (211)
                      .-.++++|++|++...  ++++... ++..++..  -.++|+++|+||+|
T Consensus        12 hL~~~ilfi~D~Se~CGysie~Q~~-L~~~ik~~--F~~~P~i~V~nK~D   58 (58)
T PF06858_consen   12 HLADAILFIIDPSEQCGYSIEEQLS-LFKEIKPL--FPNKPVIVVLNKID   58 (58)
T ss_dssp             GT-SEEEEEE-TT-TTSS-HHHHHH-HHHHHHHH--TTTS-EEEEE--TT
T ss_pred             hhcceEEEEEcCCCCCCCCHHHHHH-HHHHHHHH--cCCCCEEEEEeccC
Confidence            3468999999999743  5666666 55555544  24899999999998

The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.

>PRK14737 gmk guanylate kinase; Provisional

Probab=97.66  E-value=3.7e-05  Score=55.18  Aligned_cols=25  Identities=16%  Similarity=0.340  Sum_probs=21.5

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhhCC
Q 028300           14 SFKILLIGDSGVGKSSLLVSFISSS   38 (211)
Q Consensus        14 ~~~I~v~G~~~~GKssli~~l~~~~   38 (211)
                      ..-|+|+|++|||||||+++|....
T Consensus         4 ~~~ivl~GpsG~GK~tl~~~l~~~~   28 (186)
T PRK14737          4 PKLFIISSVAGGGKSTIIQALLEEH   28 (186)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhcC
Confidence            3458999999999999999998754

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=97.66  E-value=4.5e-05  Score=50.62  Aligned_cols=22  Identities=32%  Similarity=0.516  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q 028300           16 KILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~   37 (211)
                      .|+|.|++||||||+.+.|...
T Consensus         1 vI~I~G~~gsGKST~a~~La~~   22 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAER   22 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999999865

...

>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation

Probab=97.64  E-value=0.00028  Score=45.51  Aligned_cols=79  Identities=16%  Similarity=0.207  Sum_probs=48.1

Q ss_pred             EEEEc-CCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEEEEEC
Q 028300           17 ILLIG-DSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDV   95 (211)
Q Consensus        17 I~v~G-~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~   95 (211)
                      |++.| ..|+||||+...+...-.....+..-.+       . +..+.+.++|+|+.....  ....+..+|.++++++.
T Consensus         2 i~~~~~kgG~Gkst~~~~la~~~~~~~~~vl~~d-------~-d~~~d~viiD~p~~~~~~--~~~~l~~ad~viv~~~~   71 (104)
T cd02042           2 IAVANQKGGVGKTTTAVNLAAALARRGKRVLLID-------L-DPQYDYIIIDTPPSLGLL--TRNALAAADLVLIPVQP   71 (104)
T ss_pred             EEEEeCCCCcCHHHHHHHHHHHHHhCCCcEEEEe-------C-CCCCCEEEEeCcCCCCHH--HHHHHHHCCEEEEeccC
Confidence            56777 5589999998877643211111111111       1 112678999999864322  33677789999999987


Q ss_pred             CChhhHHHHHH
Q 028300           96 TRRETFTNLSD  106 (211)
Q Consensus        96 ~~~~s~~~~~~  106 (211)
                      +.. ++..+..
T Consensus        72 ~~~-s~~~~~~   81 (104)
T cd02042          72 SPL-DLDGLEK   81 (104)
T ss_pred             CHH-HHHHHHH
Confidence            643 5555554

ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.

>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily

Probab=97.63  E-value=0.00019  Score=49.05  Aligned_cols=105  Identities=16%  Similarity=0.152  Sum_probs=59.7

Q ss_pred             EEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEEEEECCCh
Q 028300           19 LIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRR   98 (211)
Q Consensus        19 v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~   98 (211)
                      .-|..|+|||++.-.+...-......+.-.+...   ....-.+.+.++|+|+...  ......+..+|.++++.+.+..
T Consensus         5 ~~~kgg~gkt~~~~~~a~~~~~~~~~~~~vd~D~---~~~~~~yd~VIiD~p~~~~--~~~~~~l~~aD~vviv~~~~~~   79 (139)
T cd02038           5 TSGKGGVGKTNISANLALALAKLGKRVLLLDADL---GLANLDYDYIIIDTGAGIS--DNVLDFFLAADEVIVVTTPEPT   79 (139)
T ss_pred             EcCCCCCcHHHHHHHHHHHHHHCCCcEEEEECCC---CCCCCCCCEEEEECCCCCC--HHHHHHHHhCCeEEEEcCCChh
Confidence            4578899999997766532111111111111000   0001116789999997532  2345678899999999998744


Q ss_pred             hhHHHHHHHHHHHhhhhccCCCccEEEEeecCCC
Q 028300           99 ETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDR  132 (211)
Q Consensus        99 ~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl  132 (211)
                       ++..... ..+.+...  ....++.+|+|+.+.
T Consensus        80 -s~~~~~~-~l~~l~~~--~~~~~~~lVvN~~~~  109 (139)
T cd02038          80 -SITDAYA-LIKKLAKQ--LRVLNFRVVVNRAES  109 (139)
T ss_pred             -HHHHHHH-HHHHHHHh--cCCCCEEEEEeCCCC
Confidence             4444443 33333222  235577899999974

It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=97.60  E-value=5.6e-05  Score=53.79  Aligned_cols=22  Identities=36%  Similarity=0.688  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q 028300           16 KILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~   37 (211)
                      ||+|+|+|||||||+...|...
T Consensus         2 riiilG~pGaGK~T~A~~La~~   23 (178)
T COG0563           2 RILILGPPGAGKSTLAKKLAKK   23 (178)
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            7999999999999999999876

>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]

Probab=97.59  E-value=0.0023  Score=50.78  Aligned_cols=158  Identities=18%  Similarity=0.231  Sum_probs=80.5

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccc-eeeEE-------------------EEEEEC----------CEEE
Q 028300           14 SFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIG-VDFKI-------------------KLLTVA----------GKRL   62 (211)
Q Consensus        14 ~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~-~~~~~-------------------~~~~~~----------~~~~   62 (211)
                      .-.|+++||.||||||-+-.|..... .......+ .+...                   .....+          -...
T Consensus       203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~  282 (407)
T COG1419         203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDC  282 (407)
T ss_pred             CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcC
Confidence            56789999999999999888875433 11111110 00000                   000000          1234


Q ss_pred             EEEEEeCCChhhhccc----hhhhcc--CCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCc
Q 028300           63 KLTIWDTAGQERFRTL----TSSYYR--GAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSER  136 (211)
Q Consensus        63 ~~~l~D~~g~~~~~~~----~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~  136 (211)
                      .+.|+||.|...++..    ...++.  ...-+.+|++++..  .+++.. ....+...    + .--+++||.|...  
T Consensus       283 d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K--~~dlke-i~~~f~~~----~-i~~~I~TKlDET~--  352 (407)
T COG1419         283 DVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTK--YEDLKE-IIKQFSLF----P-IDGLIFTKLDETT--  352 (407)
T ss_pred             CEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcc--hHHHHH-HHHHhccC----C-cceeEEEcccccC--
Confidence            6889999996654432    222332  23456678888864  233333 22222221    1 2257789999532  


Q ss_pred             ccCHHHHHHHHHHcCCeEEEee--ccCCCcHHHH-HHHHHHHHHhccchh
Q 028300          137 VVSREEGIALAKEHGSLFLECS--AKTRENVEQC-FEQLALKIMEVPSLL  183 (211)
Q Consensus       137 ~v~~~~~~~~~~~~~~~~~~~S--a~~~~gv~~l-~~~i~~~~~~~~~~~  183 (211)
                        ..-.........+.|+-.++  -.-.++|... -.++++.+.......
T Consensus       353 --s~G~~~s~~~e~~~PV~YvT~GQ~VPeDI~va~~~~Lv~~~~g~~~~~  400 (407)
T COG1419         353 --SLGNLFSLMYETRLPVSYVTNGQRVPEDIVVANPDYLVRRILGTFANQ  400 (407)
T ss_pred             --chhHHHHHHHHhCCCeEEEeCCCCCCchhhhcChHHHHHHHhcccccC
Confidence              22223344445555544443  2333444332 366777776665544

>KOG1534 consensus Putative transcription factor FET5 [Transcription]

Probab=97.59  E-value=7.9e-05  Score=53.50  Aligned_cols=22  Identities=32%  Similarity=0.570  Sum_probs=19.2

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHh
Q 028300           14 SFKILLIGDSGVGKSSLLVSFI   35 (211)
Q Consensus        14 ~~~I~v~G~~~~GKssli~~l~   35 (211)
                      .+-+.|+||.||||||+.+.+.
T Consensus         3 ~ya~lV~GpAgSGKSTyC~~~~   24 (273)
T KOG1534|consen    3 RYAQLVMGPAGSGKSTYCSSMY   24 (273)
T ss_pred             ceeEEEEccCCCCcchHHHHHH
Confidence            3557899999999999999886

>PRK08118 topology modulation protein; Reviewed

Probab=97.59  E-value=6.1e-05  Score=53.12  Aligned_cols=22  Identities=45%  Similarity=0.658  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q 028300           16 KILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~   37 (211)
                      ||+|+|++|||||||...|...
T Consensus         3 rI~I~G~~GsGKSTlak~L~~~   24 (167)
T PRK08118          3 KIILIGSGGSGKSTLARQLGEK   24 (167)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            7999999999999999999854

>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]

Probab=97.54  E-value=3.8e-05  Score=54.12  Aligned_cols=46  Identities=28%  Similarity=0.308  Sum_probs=29.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEE
Q 028300           15 FKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKR   61 (211)
Q Consensus        15 ~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   61 (211)
                      .-+++.||+|+|||||++.|+... .-......+++..+....++.+
T Consensus         5 ~l~vlsgPSG~GKsTl~k~L~~~~-~l~~SVS~TTR~pR~gEv~G~d   50 (191)
T COG0194           5 LLIVLSGPSGVGKSTLVKALLEDD-KLRFSVSATTRKPRPGEVDGVD   50 (191)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhhc-CeEEEEEeccCCCCCCCcCCce
Confidence            457899999999999999999775 3222233344444444444433

>PRK07261 topology modulation protein; Provisional

Probab=97.53  E-value=7.9e-05  Score=52.79  Aligned_cols=22  Identities=45%  Similarity=0.591  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q 028300           16 KILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~   37 (211)
                      ||+|+|++|||||||...+...
T Consensus         2 ri~i~G~~GsGKSTla~~l~~~   23 (171)
T PRK07261          2 KIAIIGYSGSGKSTLARKLSQH   23 (171)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            7999999999999999998754

>PF13521 AAA_28: AAA domain; PDB: 1LW7_A

Probab=97.51  E-value=7.2e-05  Score=52.53  Aligned_cols=22  Identities=23%  Similarity=0.593  Sum_probs=17.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q 028300           16 KILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~   37 (211)
                      ||+|.|.+++|||||++.|...
T Consensus         1 rI~i~G~~stGKTTL~~~L~~~   22 (163)
T PF13521_consen    1 RIVITGGPSTGKTTLIEALAAR   22 (163)
T ss_dssp             -EEEE--TTSHHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHc
Confidence            7999999999999999999866

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.50  E-value=0.00016  Score=59.04  Aligned_cols=23  Identities=26%  Similarity=0.434  Sum_probs=20.2

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhh
Q 028300           14 SFKILLIGDSGVGKSSLLVSFIS   36 (211)
Q Consensus        14 ~~~I~v~G~~~~GKssli~~l~~   36 (211)
                      .--|+++|+.|+||||.+..|..
T Consensus       256 g~Vi~LvGpnGvGKTTTiaKLA~  278 (484)
T PRK06995        256 GGVFALMGPTGVGKTTTTAKLAA  278 (484)
T ss_pred             CcEEEEECCCCccHHHHHHHHHH
Confidence            34689999999999999999874

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=97.49  E-value=9e-05  Score=50.67  Aligned_cols=21  Identities=38%  Similarity=0.589  Sum_probs=19.0

Q ss_pred             EEEEcCCCCcHHHHHHHHhhC
Q 028300           17 ILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        17 I~v~G~~~~GKssli~~l~~~   37 (211)
                      |+++|+||||||||++.+...
T Consensus         2 ii~~G~pgsGKSt~a~~l~~~   22 (143)
T PF13671_consen    2 IILCGPPGSGKSTLAKRLAKR   22 (143)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999999844

...

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=97.48  E-value=0.00098  Score=45.21  Aligned_cols=25  Identities=28%  Similarity=0.465  Sum_probs=21.7

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhhCC
Q 028300           14 SFKILLIGDSGVGKSSLLVSFISSS   38 (211)
Q Consensus        14 ~~~I~v~G~~~~GKssli~~l~~~~   38 (211)
                      .-.+.+.|++|+|||+|++.+...-
T Consensus        19 ~~~v~i~G~~G~GKT~l~~~i~~~~   43 (151)
T cd00009          19 PKNLLLYGPPGTGKTTLARAIANEL   43 (151)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHh
Confidence            3468999999999999999998764

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]

Probab=97.45  E-value=0.002  Score=47.26  Aligned_cols=47  Identities=19%  Similarity=0.212  Sum_probs=33.0

Q ss_pred             hhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCC-ccEEEEeecCCC
Q 028300           80 SSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQD-CVKMLVGNKVDR  132 (211)
Q Consensus        80 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-~p~viv~nK~Dl  132 (211)
                      +...+.+|.+|.|+|.+-. ++..+.. ..++..    ..+ .++.+|+||.|.
T Consensus       150 Rg~~~~vD~vivVvDpS~~-sl~taer-i~~L~~----elg~k~i~~V~NKv~e  197 (255)
T COG3640         150 RGTIEGVDLVIVVVDPSYK-SLRTAER-IKELAE----ELGIKRIFVVLNKVDE  197 (255)
T ss_pred             cccccCCCEEEEEeCCcHH-HHHHHHH-HHHHHH----HhCCceEEEEEeeccc
Confidence            3456789999999999865 4444443 333333    335 899999999995

>TIGR02475 CobW cobalamin biosynthesis protein CobW

Probab=97.45  E-value=0.0022  Score=50.52  Aligned_cols=21  Identities=24%  Similarity=0.531  Sum_probs=18.4

Q ss_pred             EEEEcCCCCcHHHHHHHHhhC
Q 028300           17 ILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        17 I~v~G~~~~GKssli~~l~~~   37 (211)
                      .++.|.-|||||||+++++..
T Consensus         7 ~iltGFLGaGKTTll~~ll~~   27 (341)
T TIGR02475         7 TIVTGFLGAGKTTLIRHLLQN   27 (341)
T ss_pred             EEEEECCCCCHHHHHHHHHhc
Confidence            567899999999999999854

A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).

>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.44  E-value=0.00022  Score=61.23  Aligned_cols=152  Identities=16%  Similarity=0.198  Sum_probs=77.1

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhhCCC-CC-C-------CCc---------------cceeeEEEEEE-------E-CCEE
Q 028300           14 SFKILLIGDSGVGKSSLLVSFISSSV-DD-L-------SPT---------------IGVDFKIKLLT-------V-AGKR   61 (211)
Q Consensus        14 ~~~I~v~G~~~~GKssli~~l~~~~~-~~-~-------~~~---------------~~~~~~~~~~~-------~-~~~~   61 (211)
                      .-.|+|+|+.|+||||.+..|..... .. .       ..+               .+..+.... .       + ...+
T Consensus       185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~-~~~~l~~al~~~~~  263 (767)
T PRK14723        185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVK-DAADLRFALAALGD  263 (767)
T ss_pred             CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccC-CHHHHHHHHHHhcC
Confidence            34689999999999999999874321 10 0       000               011111000 0       0 0123


Q ss_pred             EEEEEEeCCChhhhcc----chhhh--ccCCcEEEEEEECCC-hhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCC
Q 028300           62 LKLTIWDTAGQERFRT----LTSSY--YRGAQGIILVYDVTR-RETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDS  134 (211)
Q Consensus        62 ~~~~l~D~~g~~~~~~----~~~~~--~~~~d~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~  134 (211)
                      ..+.|+||+|....+.    .....  ....+-.++|+|++. .+.+.++...|....      .--+-=+|+||.|...
T Consensus       264 ~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~~~f~~~~------~~~i~glIlTKLDEt~  337 (767)
T PRK14723        264 KHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVVHAYRHGA------GEDVDGCIITKLDEAT  337 (767)
T ss_pred             CCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHHHHHhhcc------cCCCCEEEEeccCCCC
Confidence            4689999999332211    11111  234567889999875 333443332121110      0013468899999643


Q ss_pred             CcccCHHHHHHHHHHcCCeEEEeeccCCCcH-HHHH----HHHHHHHHh
Q 028300          135 ERVVSREEGIALAKEHGSLFLECSAKTRENV-EQCF----EQLALKIME  178 (211)
Q Consensus       135 ~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv-~~l~----~~i~~~~~~  178 (211)
                      .    .-.+..+....+.|+..++.  |.+| +++.    +.+.+.++.
T Consensus       338 ~----~G~iL~i~~~~~lPI~yit~--GQ~VPdDL~~a~~~~lv~~ll~  380 (767)
T PRK14723        338 H----LGPALDTVIRHRLPVHYVST--GQKVPEHLELAQADELVDRAFA  380 (767)
T ss_pred             C----ccHHHHHHHHHCCCeEEEec--CCCChhhcccCCHHHHHHHHhc
Confidence            2    22334555666777655543  3444 3332    445555554

>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]

Probab=97.44  E-value=0.00012  Score=59.05  Aligned_cols=125  Identities=22%  Similarity=0.272  Sum_probs=77.6

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhhCC------------C-CC--CCCccceeeEEEEEE----------------ECCEE
Q 028300           13 LSFKILLIGDSGVGKSSLLVSFISSS------------V-DD--LSPTIGVDFKIKLLT----------------VAGKR   61 (211)
Q Consensus        13 ~~~~I~v~G~~~~GKssli~~l~~~~------------~-~~--~~~~~~~~~~~~~~~----------------~~~~~   61 (211)
                      +--++.++.+..-|||||...|....            | +.  .....+.+..+..+.                -++.+
T Consensus        18 NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~~~   97 (842)
T KOG0469|consen   18 NIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDGNG   97 (842)
T ss_pred             ccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCCcc
Confidence            44567889999999999999986322            1 00  011122222222211                12346


Q ss_pred             EEEEEEeCCChhhhccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCC-CCcccCH
Q 028300           62 LKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRD-SERVVSR  140 (211)
Q Consensus        62 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~-~~~~v~~  140 (211)
                      +.+.++|.|||-+|.+...+.++-.|+.+.|+|..+.--...- ..+.+.+.+     .+.-++++||.|.. -+-++..
T Consensus        98 FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTE-TVLrQA~~E-----RIkPvlv~NK~DRAlLELq~~~  171 (842)
T KOG0469|consen   98 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTE-TVLRQAIAE-----RIKPVLVMNKMDRALLELQLSQ  171 (842)
T ss_pred             eeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechH-HHHHHHHHh-----hccceEEeehhhHHHHhhcCCH
Confidence            8899999999999999999999999999999998763211111 113333332     33337889999952 2334444


Q ss_pred             HHH
Q 028300          141 EEG  143 (211)
Q Consensus       141 ~~~  143 (211)
                      ++.
T Consensus       172 EeL  174 (842)
T KOG0469|consen  172 EEL  174 (842)
T ss_pred             HHH
Confidence            444

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=97.43  E-value=0.00015  Score=43.12  Aligned_cols=21  Identities=33%  Similarity=0.534  Sum_probs=19.2

Q ss_pred             EEEEcCCCCcHHHHHHHHhhC
Q 028300           17 ILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        17 I~v~G~~~~GKssli~~l~~~   37 (211)
                      |++.|++|+||||+.+.+...
T Consensus         2 i~i~G~~gsGKst~~~~l~~~   22 (69)
T cd02019           2 IAITGGSGSGKSTVAKKLAEQ   22 (69)
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999998865

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A []

Probab=97.42  E-value=0.02  Score=40.14  Aligned_cols=145  Identities=17%  Similarity=0.112  Sum_probs=98.3

Q ss_pred             CCCceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEE-eCCChhhhccchhhhccCCc
Q 028300            9 NSYDLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIW-DTAGQERFRTLTSSYYRGAQ   87 (211)
Q Consensus         9 ~~~~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-D~~g~~~~~~~~~~~~~~~d   87 (211)
                      .+.-+...|.++|..+.++..|...+...+-         ++.          +++.+- -+|-..+....    =...|
T Consensus        10 lp~ln~atiLLVg~e~~~~~~LA~a~l~~~~---------~~~----------l~Vh~a~sLPLp~e~~~l----RprID   66 (176)
T PF11111_consen   10 LPELNTATILLVGTEEALLQQLAEAMLEEDK---------EFK----------LKVHLAKSLPLPSENNNL----RPRID   66 (176)
T ss_pred             CCCcceeEEEEecccHHHHHHHHHHHHhhcc---------cee----------EEEEEeccCCCcccccCC----CceeE
Confidence            4566788999999999999999999986321         011          111111 11111111111    23579


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHH
Q 028300           88 GIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQ  167 (211)
Q Consensus        88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~  167 (211)
                      .+++++|.....|+..+.. =+..+...... + .+.++++-..-.+...+...++.+++..+..|++.+.-.+..+...
T Consensus        67 lIVFvinl~sk~SL~~ve~-SL~~vd~~ffl-G-KVCfl~t~a~~~~~~sv~~~~V~kla~~y~~plL~~~le~~~~~~~  143 (176)
T PF11111_consen   67 LIVFVINLHSKYSLQSVEA-SLSHVDPSFFL-G-KVCFLATNAGRESHCSVHPNEVRKLAATYNSPLLFADLENEEGRTS  143 (176)
T ss_pred             EEEEEEecCCcccHHHHHH-HHhhCChhhhc-c-ceEEEEcCCCcccccccCHHHHHHHHHHhCCCEEEeecccchHHHH
Confidence            9999999999999988877 44444432122 2 3455566666556677888999999999999999999999988887


Q ss_pred             HHHHHHHHHHhc
Q 028300          168 CFEQLALKIMEV  179 (211)
Q Consensus       168 l~~~i~~~~~~~  179 (211)
                      +-..|++.+.-.
T Consensus       144 lAqRLL~~lqi~  155 (176)
T PF11111_consen  144 LAQRLLRMLQIC  155 (176)
T ss_pred             HHHHHHHHHHHH
Confidence            777777765543

CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival [].

>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=97.42  E-value=0.00016  Score=57.42  Aligned_cols=121  Identities=19%  Similarity=0.213  Sum_probs=65.6

Q ss_pred             CCCCCCCCceeeEEEEEcCCCCcHHHHHHHHhhCC----C-------CCCCC-----------ccceeeEEEE-----EE
Q 028300            4 SSGQSNSYDLSFKILLIGDSGVGKSSLLVSFISSS----V-------DDLSP-----------TIGVDFKIKL-----LT   56 (211)
Q Consensus         4 ~~~~~~~~~~~~~I~v~G~~~~GKssli~~l~~~~----~-------~~~~~-----------~~~~~~~~~~-----~~   56 (211)
                      +...+.....+..|.++|..|+||||.+-.|...-    .       +.+.|           ..+..++...     +.
T Consensus        90 ~~~~~l~~~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~  169 (451)
T COG0541          90 NSELNLAKKPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVE  169 (451)
T ss_pred             CcccccCCCCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHH
Confidence            34444556678899999999999999987775211    0       11111           0111111110     00


Q ss_pred             E--------CCEEEEEEEEeCCChhhhccc------hhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCcc
Q 028300           57 V--------AGKRLKLTIWDTAGQERFRTL------TSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCV  122 (211)
Q Consensus        57 ~--------~~~~~~~~l~D~~g~~~~~~~------~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p  122 (211)
                      +        ....+.+.++||+|....+..      ...-.-++|=+++|+|+.-.+.-.+.-.-+...+...       
T Consensus       170 Iak~al~~ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~A~aF~e~l~it-------  242 (451)
T COG0541         170 IAKAALEKAKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVNTAKAFNEALGIT-------  242 (451)
T ss_pred             HHHHHHHHHHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHHHHHHHHhhhcCCc-------
Confidence            0        012347899999994433221      1123457799999999887554433333244444321       


Q ss_pred             EEEEeecCCC
Q 028300          123 KMLVGNKVDR  132 (211)
Q Consensus       123 ~viv~nK~Dl  132 (211)
                       =||+||.|-
T Consensus       243 -GvIlTKlDG  251 (451)
T COG0541         243 -GVILTKLDG  251 (451)
T ss_pred             -eEEEEcccC
Confidence             355666664

>TIGR00150 HI0065_YjeE ATPase, YjeE family

Probab=97.40  E-value=0.00075  Score=45.50  Aligned_cols=23  Identities=35%  Similarity=0.638  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCC
Q 028300           16 KILLIGDSGVGKSSLLVSFISSS   38 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~~   38 (211)
                      .|++.|+.|+|||||++.+...-
T Consensus        24 ~i~l~G~lGaGKTtl~~~l~~~l   46 (133)
T TIGR00150        24 VVLLKGDLGAGKTTLVQGLLQGL   46 (133)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHc
Confidence            58999999999999999998763

Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.

>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.37  E-value=0.0017  Score=49.30  Aligned_cols=131  Identities=18%  Similarity=0.188  Sum_probs=68.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhhCCC-----------CCCC-----------CccceeeEEEEE------E---E-CCEEE
Q 028300           15 FKILLIGDSGVGKSSLLVSFISSSV-----------DDLS-----------PTIGVDFKIKLL------T---V-AGKRL   62 (211)
Q Consensus        15 ~~I~v~G~~~~GKssli~~l~~~~~-----------~~~~-----------~~~~~~~~~~~~------~---~-~~~~~   62 (211)
                      -+|+++|++|+||||++..+...-.           +...           ...+..+....-      .   . ....+
T Consensus        76 ~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~  155 (270)
T PRK06731         76 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEARV  155 (270)
T ss_pred             CEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcCCC
Confidence            5899999999999999887753211           0000           001111110000      0   0 01246


Q ss_pred             EEEEEeCCChhhhcc-c---hhhhc--cCCcEEEEEEECCC-hhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCC
Q 028300           63 KLTIWDTAGQERFRT-L---TSSYY--RGAQGIILVYDVTR-RETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSE  135 (211)
Q Consensus        63 ~~~l~D~~g~~~~~~-~---~~~~~--~~~d~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~  135 (211)
                      .+.++|++|....+. .   +..++  ...+-.++|+|++. .+...+.    ...+.     .-.+--+|+||.|....
T Consensus       156 D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~d~~~~----~~~f~-----~~~~~~~I~TKlDet~~  226 (270)
T PRK06731        156 DYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEI----ITNFK-----DIHIDGIVFTKFDETAS  226 (270)
T ss_pred             CEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHHHHHHH----HHHhC-----CCCCCEEEEEeecCCCC
Confidence            789999999553211 1   11222  24567899999874 3222222    22211     12334788999996432


Q ss_pred             cccCHHHHHHHHHHcCCeEEEee
Q 028300          136 RVVSREEGIALAKEHGSLFLECS  158 (211)
Q Consensus       136 ~~v~~~~~~~~~~~~~~~~~~~S  158 (211)
                        .  -.+.......+.|+..++
T Consensus       227 --~--G~~l~~~~~~~~Pi~~it  245 (270)
T PRK06731        227 --S--GELLKIPAVSSAPIVLMT  245 (270)
T ss_pred             --c--cHHHHHHHHHCcCEEEEe
Confidence              1  223445556677755554

>KOG1533 consensus Predicted GTPase [General function prediction only]

Probab=97.36  E-value=1.9e-05  Score=57.54  Aligned_cols=69  Identities=12%  Similarity=0.062  Sum_probs=38.7

Q ss_pred             EEEEEEEeCCChhhh----ccc--hhhhccCCcEEEEEEE------CCChhhHHHHHHHHHHHhhhhccCCCccEEEEee
Q 028300           61 RLKLTIWDTAGQERF----RTL--TSSYYRGAQGIILVYD------VTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGN  128 (211)
Q Consensus        61 ~~~~~l~D~~g~~~~----~~~--~~~~~~~~d~~i~v~d------~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~n  128 (211)
                      .-.+.++|+||+-++    ..+  ....+++.|.=+.++.      .+++..|-...-   ..+... .....|-+=|+.
T Consensus        96 ~~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~iS~lL---~sl~tM-l~melphVNvlS  171 (290)
T KOG1533|consen   96 TDHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKFISSLL---VSLATM-LHMELPHVNVLS  171 (290)
T ss_pred             cCcEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHHHHHHH---HHHHHH-Hhhcccchhhhh
Confidence            346789999996442    111  2233445665555444      345655554432   222222 234778899999


Q ss_pred             cCCCC
Q 028300          129 KVDRD  133 (211)
Q Consensus       129 K~Dl~  133 (211)
                      |+|+.
T Consensus       172 K~Dl~  176 (290)
T KOG1533|consen  172 KADLL  176 (290)
T ss_pred             HhHHH
Confidence            99973

>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=97.36  E-value=0.002  Score=52.81  Aligned_cols=44  Identities=16%  Similarity=0.218  Sum_probs=29.9

Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCC
Q 028300           88 GIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDR  132 (211)
Q Consensus        88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl  132 (211)
                      .+|+|=|+-+......... ++..+..+......|+|+++|-+-.
T Consensus       196 ~liLveDLPn~~~~d~~~~-f~evL~~y~s~g~~PlIf~iTd~~~  239 (634)
T KOG1970|consen  196 KLILVEDLPNQFYRDDSET-FREVLRLYVSIGRCPLIFIITDSLS  239 (634)
T ss_pred             eEEEeeccchhhhhhhHHH-HHHHHHHHHhcCCCcEEEEEecccc
Confidence            3577777666544444444 6666666767788999999988765

>PF03215 Rad17: Rad17 cell cycle checkpoint protein

Probab=97.35  E-value=0.002  Score=53.48  Aligned_cols=22  Identities=32%  Similarity=0.530  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q 028300           16 KILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~   37 (211)
                      -+++.||+|+||||.++.|...
T Consensus        47 iLlLtGP~G~GKtttv~~La~e   68 (519)
T PF03215_consen   47 ILLLTGPSGCGKTTTVKVLAKE   68 (519)
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            4667899999999999988754

>KOG3929 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.35  E-value=0.00018  Score=53.32  Aligned_cols=89  Identities=17%  Similarity=0.301  Sum_probs=55.0

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECC-EEEEEEEEeCCChhhhccchhhhc--c--CC
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAG-KRLKLTIWDTAGQERFRTLTSSYY--R--GA   86 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~D~~g~~~~~~~~~~~~--~--~~   86 (211)
                      ..+..|++.|..+  ||++|++.+..+-....++...+|..-...-.+ .+--..+|+++|......+..--+  .  +.
T Consensus        43 ~~E~~I~~~Gn~~--~tt~I~~~FdR~e~~~~ptlaLEYtygRR~~g~~~kdiaN~WELGgg~~~~~LLsVPit~~~l~~  120 (363)
T KOG3929|consen   43 KFEFFIGSKGNGG--KTTIILRCFDRDEPPKPPTLALEYTYGRRAKGHNPKDIANFWELGGGTSLLDLLSVPITGDTLRT  120 (363)
T ss_pred             cceeEEEEecCCc--eeEeehhhcCcccCCCCCceeeeeehhhhccCCCchhHHHHHHhcCCccHHHHhcCcccccchhh
Confidence            5677899999765  499999888776555566665555433322223 223458999998654433221111  1  12


Q ss_pred             cEEEEEEECCChhhHH
Q 028300           87 QGIILVYDVTRRETFT  102 (211)
Q Consensus        87 d~~i~v~d~~~~~s~~  102 (211)
                      =.+|++.|++.++.+.
T Consensus       121 ~slIL~LDls~p~~~W  136 (363)
T KOG3929|consen  121 FSLILVLDLSKPNDLW  136 (363)
T ss_pred             hhheeeeecCChHHHH
Confidence            3578999999987543

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=97.34  E-value=0.00023  Score=41.03  Aligned_cols=22  Identities=36%  Similarity=0.540  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q 028300           16 KILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~   37 (211)
                      ..+|.|+.|+|||||+..+.-.
T Consensus        25 ~tli~G~nGsGKSTllDAi~~~   46 (62)
T PF13555_consen   25 VTLITGPNGSGKSTLLDAIQTV   46 (62)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            3789999999999999987643

>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.34  E-value=0.00019  Score=56.11  Aligned_cols=104  Identities=17%  Similarity=0.202  Sum_probs=56.7

Q ss_pred             CCceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCC---------------------CccceeeEE-------EEE-----
Q 028300           10 SYDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLS---------------------PTIGVDFKI-------KLL-----   55 (211)
Q Consensus        10 ~~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~---------------------~~~~~~~~~-------~~~-----   55 (211)
                      ...++--|.++|..|+||||.+-.|....- ..+.                     .-.+..++.       ..+     
T Consensus        97 ~K~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv  176 (483)
T KOG0780|consen   97 KKGKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGV  176 (483)
T ss_pred             ccCCCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHH
Confidence            345556788999999999999887752110 0000                     000111111       000     


Q ss_pred             -EECCEEEEEEEEeCCChhhh-ccchhh-----hccCCcEEEEEEECCChhhHHHHHHHHHHHhh
Q 028300           56 -TVAGKRLKLTIWDTAGQERF-RTLTSS-----YYRGAQGIILVYDVTRRETFTNLSDVWAKEVD  113 (211)
Q Consensus        56 -~~~~~~~~~~l~D~~g~~~~-~~~~~~-----~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~  113 (211)
                       .+..+.+.+.+.||.|.... ..+...     -.-+.|-+|+|.|++-.+.-+....-+.+.+.
T Consensus       177 ~~fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa~aFk~~vd  241 (483)
T KOG0780|consen  177 DRFKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQARAFKETVD  241 (483)
T ss_pred             HHHHhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHHHHHHHhhc
Confidence             11224578999999993321 222211     12357999999999976654444332555543

>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein

Probab=97.33  E-value=0.00018  Score=53.36  Aligned_cols=32  Identities=28%  Similarity=0.551  Sum_probs=26.8

Q ss_pred             CCCCCceeeEEEEEcCCCCcHHHHHHHHhhCC
Q 028300            7 QSNSYDLSFKILLIGDSGVGKSSLLVSFISSS   38 (211)
Q Consensus         7 ~~~~~~~~~~I~v~G~~~~GKssli~~l~~~~   38 (211)
                      ...-.+.++|++|+|++|||||+|+..++...
T Consensus         6 ~~~l~~~~fr~viIG~sGSGKT~li~~lL~~~   37 (241)
T PF04665_consen    6 RNSLLKDPFRMVIIGKSGSGKTTLIKSLLYYL   37 (241)
T ss_pred             hhHhcCCCceEEEECCCCCCHHHHHHHHHHhh
Confidence            34456778999999999999999999998653

This is thought to be an ATPase involved in viral DNA packaging [].

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=97.30  E-value=0.00025  Score=51.35  Aligned_cols=23  Identities=39%  Similarity=0.595  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCC
Q 028300           16 KILLIGDSGVGKSSLLVSFISSS   38 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~~   38 (211)
                      .++++||+|||||||++.+.+-+
T Consensus        30 vv~iiGpSGSGKSTlLRclN~LE   52 (240)
T COG1126          30 VVVIIGPSGSGKSTLLRCLNGLE   52 (240)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCc
Confidence            68999999999999999988664

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=97.29  E-value=0.00023  Score=48.28  Aligned_cols=23  Identities=30%  Similarity=0.528  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCC
Q 028300           16 KILLIGDSGVGKSSLLVSFISSS   38 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~~   38 (211)
                      .++|+|+.|+|||||++.+.+..
T Consensus        13 ~~~i~G~nGsGKStLl~~l~g~~   35 (137)
T PF00005_consen   13 IVAIVGPNGSGKSTLLKALAGLL   35 (137)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTSS
T ss_pred             EEEEEccCCCccccceeeecccc
Confidence            68999999999999999888763

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>TIGR03263 guanyl_kin guanylate kinase

Probab=97.28  E-value=0.0003  Score=50.16  Aligned_cols=23  Identities=39%  Similarity=0.684  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCC
Q 028300           16 KILLIGDSGVGKSSLLVSFISSS   38 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~~   38 (211)
                      .|+|+|++|||||||++.|....
T Consensus         3 ii~l~G~~GsGKsTl~~~L~~~~   25 (180)
T TIGR03263         3 LIVISGPSGVGKSTLVKALLEED   25 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHccC
Confidence            48999999999999999998753

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster

Probab=97.28  E-value=0.0011  Score=43.08  Aligned_cols=103  Identities=16%  Similarity=0.121  Sum_probs=56.4

Q ss_pred             EEEE-cCCCCcHHHHHHHHhhCCCCC-CCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEEEEE
Q 028300           17 ILLI-GDSGVGKSSLLVSFISSSVDD-LSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYD   94 (211)
Q Consensus        17 I~v~-G~~~~GKssli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d   94 (211)
                      |+++ +..|+||||+...|...-... .......+..     ... ...+.++|+|+.....  ....+..+|.++++.+
T Consensus         2 i~~~~~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~d-----~~~-~~D~IIiDtpp~~~~~--~~~~l~~aD~vlvvv~   73 (106)
T cd03111           2 IAFIGAKGGVGATTLAANLAVALAKEAGRRVLLVDLD-----LQF-GDDYVVVDLGRSLDEV--SLAALDQADRVFLVTQ   73 (106)
T ss_pred             EEEECCCCCCcHHHHHHHHHHHHHhcCCCcEEEEECC-----CCC-CCCEEEEeCCCCcCHH--HHHHHHHcCeEEEEec
Confidence            3443 456899999887775332211 1111111111     000 1168999999864322  3456788999999998


Q ss_pred             CCChhhHHHHHHHHHHHhhhhccCCCccEEEEeec
Q 028300           95 VTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNK  129 (211)
Q Consensus        95 ~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK  129 (211)
                      .+.. ++..+.. +.+.+..........+.+|+|+
T Consensus        74 ~~~~-s~~~~~~-~~~~l~~~~~~~~~~~~lVvNr  106 (106)
T cd03111          74 QDLP-SIRNAKR-LLELLRVLDYSLPAKIELVLNR  106 (106)
T ss_pred             CChH-HHHHHHH-HHHHHHHcCCCCcCceEEEecC
Confidence            7754 4555555 4555443311113456677764

The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=97.27  E-value=0.00023  Score=52.28  Aligned_cols=23  Identities=35%  Similarity=0.460  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCC
Q 028300           16 KILLIGDSGVGKSSLLVSFISSS   38 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~~   38 (211)
                      -|+|+|++|||||||++-+.+-.
T Consensus        33 ~vaI~GpSGSGKSTLLniig~ld   55 (226)
T COG1136          33 FVAIVGPSGSGKSTLLNLLGGLD   55 (226)
T ss_pred             EEEEECCCCCCHHHHHHHHhccc
Confidence            58999999999999999776543

>PRK06217 hypothetical protein; Validated

Probab=97.24  E-value=0.00029  Score=50.51  Aligned_cols=22  Identities=27%  Similarity=0.498  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q 028300           16 KILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~   37 (211)
                      +|+|+|.+|||||||..+|...
T Consensus         3 ~I~i~G~~GsGKSTla~~L~~~   24 (183)
T PRK06217          3 RIHITGASGSGTTTLGAALAER   24 (183)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6999999999999999999854

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=97.22  E-value=0.00029  Score=47.05  Aligned_cols=21  Identities=24%  Similarity=0.374  Sum_probs=19.3

Q ss_pred             EEEEcCCCCcHHHHHHHHhhC
Q 028300           17 ILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        17 I~v~G~~~~GKssli~~l~~~   37 (211)
                      |+|.|.+||||||+++.|...
T Consensus         1 I~i~G~~GsGKtTia~~L~~~   21 (129)
T PF13238_consen    1 IGISGIPGSGKTTIAKELAER   21 (129)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999998865

...

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=97.21  E-value=0.00032  Score=47.07  Aligned_cols=21  Identities=38%  Similarity=0.586  Sum_probs=19.5

Q ss_pred             EEEEcCCCCcHHHHHHHHhhC
Q 028300           17 ILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        17 I~v~G~~~~GKssli~~l~~~   37 (211)
                      |++.|++|+|||++++.+...
T Consensus         1 ill~G~~G~GKT~l~~~la~~   21 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQY   21 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHH
T ss_pred             CEEECcCCCCeeHHHHHHHhh
Confidence            689999999999999999876

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=97.21  E-value=0.0046  Score=44.04  Aligned_cols=24  Identities=21%  Similarity=0.319  Sum_probs=21.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhhCC
Q 028300           15 FKILLIGDSGVGKSSLLVSFISSS   38 (211)
Q Consensus        15 ~~I~v~G~~~~GKssli~~l~~~~   38 (211)
                      =.++++|+.|+|||||++.+.+..
T Consensus        26 e~~~l~G~nGsGKSTLl~~l~Gl~   49 (177)
T cd03222          26 EVIGIVGPNGTGKTTAVKILAGQL   49 (177)
T ss_pred             CEEEEECCCCChHHHHHHHHHcCC
Confidence            378999999999999999888754

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK14530 adenylate kinase; Provisional

Probab=97.21  E-value=0.00032  Score=51.64  Aligned_cols=21  Identities=33%  Similarity=0.639  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhh
Q 028300           16 KILLIGDSGVGKSSLLVSFIS   36 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~   36 (211)
                      +|+|+|+|||||||+.+.|..
T Consensus         5 ~I~i~G~pGsGKsT~~~~La~   25 (215)
T PRK14530          5 RILLLGAPGAGKGTQSSNLAE   25 (215)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            899999999999999999864

>PLN02459 probable adenylate kinase

Probab=97.21  E-value=0.00047  Score=51.84  Aligned_cols=34  Identities=21%  Similarity=0.306  Sum_probs=28.4

Q ss_pred             CCCCCCCCCceeeEEEEEcCCCCcHHHHHHHHhh
Q 028300            3 SSSGQSNSYDLSFKILLIGDSGVGKSSLLVSFIS   36 (211)
Q Consensus         3 ~~~~~~~~~~~~~~I~v~G~~~~GKssli~~l~~   36 (211)
                      +-+..|.......+|+|+|+||+||||+...+..
T Consensus        18 ~~~~~~~~~~~~~~ii~~G~PGsGK~T~a~~la~   51 (261)
T PLN02459         18 SACDRSLAKGRNVNWVFLGCPGVGKGTYASRLSK   51 (261)
T ss_pred             ccccCCccccCccEEEEECCCCCCHHHHHHHHHH
Confidence            4456677777778999999999999999998874

>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A

Probab=97.19  E-value=0.00037  Score=47.60  Aligned_cols=22  Identities=23%  Similarity=0.530  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q 028300           16 KILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~   37 (211)
                      .|.|+|+.|+|||||+..|++.
T Consensus         2 vv~VvG~~~sGKTTl~~~Li~~   23 (140)
T PF03205_consen    2 VVQVVGPKNSGKTTLIRKLINE   23 (140)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999999865

>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop

Probab=97.19  E-value=0.0013  Score=43.65  Aligned_cols=24  Identities=33%  Similarity=0.486  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhhCC
Q 028300           15 FKILLIGDSGVGKSSLLVSFISSS   38 (211)
Q Consensus        15 ~~I~v~G~~~~GKssli~~l~~~~   38 (211)
                      --|++-|+-|+|||||++.+...-
T Consensus        16 ~vi~L~GdLGaGKTtf~r~l~~~l   39 (123)
T PF02367_consen   16 DVILLSGDLGAGKTTFVRGLARAL   39 (123)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHc
Confidence            358899999999999999998644

They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.

>PLN02840 tRNA dimethylallyltransferase

Probab=97.18  E-value=0.004  Score=50.08  Aligned_cols=101  Identities=12%  Similarity=0.092  Sum_probs=51.4

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEEEE
Q 028300           14 SFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVY   93 (211)
Q Consensus        14 ~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (211)
                      ..-|+|.|++|||||+|...|...-....            +..+... .+.-+|++...-   .....-.-.+.+|=++
T Consensus        21 ~~vi~I~GptgsGKTtla~~La~~~~~~i------------is~Ds~q-vYr~~~IgTaKp---t~eE~~~V~Hhlidil   84 (421)
T PLN02840         21 EKVIVISGPTGAGKSRLALELAKRLNGEI------------ISADSVQ-VYRGLDVGSAKP---SLSERKEVPHHLIDIL   84 (421)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHCCCCe------------Eeccccc-eecceeEEcCCC---CHHHHcCCCeEeEeec
Confidence            33589999999999999999986531111            1111100 112223222110   0111111234444455


Q ss_pred             ECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecC
Q 028300           94 DVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKV  130 (211)
Q Consensus        94 d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~  130 (211)
                      |.++.-+...........+.......++|+++-+|-.
T Consensus        85 ~p~e~ySv~~F~~~A~~~I~~i~~rgkiPIvVGGTGl  121 (421)
T PLN02840         85 HPSDDYSVGAFFDDARRATQDILNRGRVPIVAGGTGL  121 (421)
T ss_pred             CCCCceeHHHHHHHHHHHHHHHHhcCCCEEEEcCccH
Confidence            6666555444444344445544456788988777654

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=97.18  E-value=0.00035  Score=47.57  Aligned_cols=21  Identities=52%  Similarity=0.808  Sum_probs=19.2

Q ss_pred             EEEEcCCCCcHHHHHHHHhhC
Q 028300           17 ILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        17 I~v~G~~~~GKssli~~l~~~   37 (211)
                      |+|+|++|+|||||++.|...
T Consensus         2 i~i~GpsGsGKstl~~~L~~~   22 (137)
T cd00071           2 IVLSGPSGVGKSTLLKRLLEE   22 (137)
T ss_pred             EEEECCCCCCHHHHHHHHHhc
Confidence            689999999999999999865

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>PRK03839 putative kinase; Provisional

Probab=97.18  E-value=0.00037  Score=49.77  Aligned_cols=22  Identities=27%  Similarity=0.457  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q 028300           16 KILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~   37 (211)
                      +|+++|+|||||||+.+.|...
T Consensus         2 ~I~l~G~pGsGKsT~~~~La~~   23 (180)
T PRK03839          2 IIAITGTPGVGKTTVSKLLAEK   23 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6999999999999999998754

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.18  E-value=0.00032  Score=51.83  Aligned_cols=23  Identities=35%  Similarity=0.508  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCC
Q 028300           16 KILLIGDSGVGKSSLLVSFISSS   38 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~~   38 (211)
                      -|+++|++|+|||||++-+.+-.
T Consensus        31 fvsilGpSGcGKSTLLriiAGL~   53 (248)
T COG1116          31 FVAILGPSGCGKSTLLRLIAGLE   53 (248)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47999999999999999888654

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=97.17  E-value=0.0004  Score=46.75  Aligned_cols=26  Identities=27%  Similarity=0.386  Sum_probs=22.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhhCCCC
Q 028300           15 FKILLIGDSGVGKSSLLVSFISSSVD   40 (211)
Q Consensus        15 ~~I~v~G~~~~GKssli~~l~~~~~~   40 (211)
                      -.++++|++|+|||+++..+...-..
T Consensus         3 ~~~~l~G~~G~GKTtl~~~l~~~~~~   28 (148)
T smart00382        3 EVILIVGPPGSGKTTLARALARELGP   28 (148)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhccCC
Confidence            46899999999999999999876543

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=97.16  E-value=0.00084  Score=51.75  Aligned_cols=142  Identities=19%  Similarity=0.260  Sum_probs=77.7

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCC------------------c----cceeeEEEE-------EEE-----
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFISSSVDDLSP------------------T----IGVDFKIKL-------LTV-----   57 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~------------------~----~~~~~~~~~-------~~~-----   57 (211)
                      ..++-|+|+|-.|+||||-|-.|..........                  .    .+..+-...       +-+     
T Consensus       137 ~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~~  216 (340)
T COG0552         137 KKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQA  216 (340)
T ss_pred             CCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHHH
Confidence            458899999999999999998886221100000                  0    011111000       000     


Q ss_pred             -CCEEEEEEEEeCCChhhhcc-------chhhhccCC-----cEEEEEEECCCh-hhHHHHHHHHHHHhhhhccCCCccE
Q 028300           58 -AGKRLKLTIWDTAGQERFRT-------LTSSYYRGA-----QGIILVYDVTRR-ETFTNLSDVWAKEVDLYSTNQDCVK  123 (211)
Q Consensus        58 -~~~~~~~~l~D~~g~~~~~~-------~~~~~~~~~-----d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~~p~  123 (211)
                       ..+.+.+.|+||+|......       -....+...     +=++++.|++.. +++..++. +...+..-        
T Consensus       217 Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QAk~-F~eav~l~--------  287 (340)
T COG0552         217 AKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQAKI-FNEAVGLD--------  287 (340)
T ss_pred             HHHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHHHHH-HHHhcCCc--------
Confidence             01356789999999322111       012223333     338888898764 45555555 54444322        


Q ss_pred             EEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHH
Q 028300          124 MLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQC  168 (211)
Q Consensus       124 viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l  168 (211)
                      -+++||.|....--+    +...+..+++|+..+-.  |++++++
T Consensus       288 GiIlTKlDgtAKGG~----il~I~~~l~~PI~fiGv--GE~~~DL  326 (340)
T COG0552         288 GIILTKLDGTAKGGI----ILSIAYELGIPIKFIGV--GEGYDDL  326 (340)
T ss_pred             eEEEEecccCCCcce----eeeHHHHhCCCEEEEeC--CCChhhc
Confidence            688999996433322    23456677888666532  5556555

>PRK04195 replication factor C large subunit; Provisional

Probab=97.15  E-value=0.0062  Score=50.46  Aligned_cols=24  Identities=38%  Similarity=0.567  Sum_probs=21.1

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhhC
Q 028300           14 SFKILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        14 ~~~I~v~G~~~~GKssli~~l~~~   37 (211)
                      .-.+++.|++|+||||+++.+...
T Consensus        39 ~~~lLL~GppG~GKTtla~ala~e   62 (482)
T PRK04195         39 KKALLLYGPPGVGKTSLAHALAND   62 (482)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH
Confidence            446889999999999999999875

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=97.15  E-value=0.00037  Score=49.67  Aligned_cols=22  Identities=36%  Similarity=0.498  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q 028300           16 KILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~   37 (211)
                      .|+|+|++|||||||++.|...
T Consensus         3 ~~~i~G~sGsGKttl~~~l~~~   24 (179)
T TIGR02322         3 LIYVVGPSGAGKDTLLDYARAR   24 (179)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999998765

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>PRK08233 hypothetical protein; Provisional

Probab=97.14  E-value=0.00043  Score=49.36  Aligned_cols=24  Identities=25%  Similarity=0.260  Sum_probs=21.0

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhhC
Q 028300           14 SFKILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        14 ~~~I~v~G~~~~GKssli~~l~~~   37 (211)
                      ..-|+|.|++|||||||.++|...
T Consensus         3 ~~iI~I~G~~GsGKtTla~~L~~~   26 (182)
T PRK08233          3 TKIITIAAVSGGGKTTLTERLTHK   26 (182)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhh
Confidence            367899999999999999999854

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=97.14  E-value=0.00042  Score=49.80  Aligned_cols=22  Identities=45%  Similarity=0.647  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q 028300           16 KILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~   37 (211)
                      .|+|+|++|+|||||++.|...
T Consensus         4 ~i~l~G~sGsGKsTl~~~l~~~   25 (186)
T PRK10078          4 LIWLMGPSGSGKDSLLAALRQR   25 (186)
T ss_pred             EEEEECCCCCCHHHHHHHHhcc
Confidence            6899999999999999999765

>PRK05480 uridine/cytidine kinase; Provisional

Probab=97.13  E-value=0.00048  Score=50.45  Aligned_cols=26  Identities=23%  Similarity=0.365  Sum_probs=23.0

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhhC
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~~~   37 (211)
                      .....|+|.|++|||||||.+.|...
T Consensus         4 ~~~~iI~I~G~sGsGKTTl~~~l~~~   29 (209)
T PRK05480          4 KKPIIIGIAGGSGSGKTTVASTIYEE   29 (209)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            36789999999999999999998864

>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=97.13  E-value=0.0037  Score=45.10  Aligned_cols=119  Identities=15%  Similarity=0.239  Sum_probs=60.6

Q ss_pred             EEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCC---hhhhc-----cchhhhccCCcE
Q 028300           17 ILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAG---QERFR-----TLTSSYYRGAQG   88 (211)
Q Consensus        17 I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g---~~~~~-----~~~~~~~~~~d~   88 (211)
                      |++.|.||||||||.+.|...--.........+         ..-....+||-.-   .+.|+     ...+......+-
T Consensus         4 iIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~---------kdy~~~i~~DEslpi~ke~yres~~ks~~rlldSalkn   74 (261)
T COG4088           4 IILTGYPGSGKTTFAKELAKELRQEIWRVIHLE---------KDYLRGILWDESLPILKEVYRESFLKSVERLLDSALKN   74 (261)
T ss_pred             EEEecCCCCCchHHHHHHHHHHHHhhhhccccc---------hhhhhheecccccchHHHHHHHHHHHHHHHHHHHHhcc
Confidence            688999999999999988743211111111110         0111234555332   11121     111222222334


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCC--------CCCcccCHHHHHHHHHHc
Q 028300           89 IILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDR--------DSERVVSREEGIALAKEH  150 (211)
Q Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl--------~~~~~v~~~~~~~~~~~~  150 (211)
                      .+.++|.++  .+..++..+.-+.    .....+.-||-.++-+        .....++.+...++...+
T Consensus        75 ~~VIvDdtN--YyksmRrqL~cea----k~~~tt~ciIyl~~plDtc~rrN~ergepip~Evl~qly~Rf  138 (261)
T COG4088          75 YLVIVDDTN--YYKSMRRQLACEA----KERKTTWCIIYLRTPLDTCLRRNRERGEPIPEEVLRQLYDRF  138 (261)
T ss_pred             eEEEEeccc--HHHHHHHHHHHHH----HhcCCceEEEEEccCHHHHHHhhccCCCCCCHHHHHHHHHhh
Confidence            455556554  3445444333333    3457778888877765        234556777777776654

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=97.12  E-value=0.00056  Score=48.32  Aligned_cols=24  Identities=33%  Similarity=0.439  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhhCC
Q 028300           15 FKILLIGDSGVGKSSLLVSFISSS   38 (211)
Q Consensus        15 ~~I~v~G~~~~GKssli~~l~~~~   38 (211)
                      =+++|+|++|+|||||+|-+.+-.
T Consensus        26 e~vAi~GpSGaGKSTLLnLIAGF~   49 (231)
T COG3840          26 EIVAILGPSGAGKSTLLNLIAGFE   49 (231)
T ss_pred             cEEEEECCCCccHHHHHHHHHhcc
Confidence            378999999999999999887554

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=97.11  E-value=0.00043  Score=50.24  Aligned_cols=21  Identities=33%  Similarity=0.528  Sum_probs=19.3

Q ss_pred             EEEEcCCCCcHHHHHHHHhhC
Q 028300           17 ILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        17 I~v~G~~~~GKssli~~l~~~   37 (211)
                      |+|.|++|||||||++.|.+.
T Consensus         2 igi~G~~GsGKSTl~~~l~~~   22 (198)
T cd02023           2 IGIAGGSGSGKTTVAEEIIEQ   22 (198)
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999999765

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=97.10  E-value=0.00041  Score=49.70  Aligned_cols=22  Identities=23%  Similarity=0.460  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhh
Q 028300           15 FKILLIGDSGVGKSSLLVSFIS   36 (211)
Q Consensus        15 ~~I~v~G~~~~GKssli~~l~~   36 (211)
                      ..|+++|++||||||+++.+..
T Consensus         4 ~ii~i~G~~GsGKsTl~~~l~~   25 (188)
T TIGR01360         4 KIIFIVGGPGSGKGTQCEKIVE   25 (188)
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999999973

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>TIGR00235 udk uridine kinase

Probab=97.10  E-value=0.00056  Score=50.01  Aligned_cols=26  Identities=23%  Similarity=0.272  Sum_probs=22.3

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhhC
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~~~   37 (211)
                      +....|+|.|++|||||||++.+.+.
T Consensus         4 ~~g~vi~I~G~sGsGKSTl~~~l~~~   29 (207)
T TIGR00235         4 PKGIIIGIGGGSGSGKTTVARKIYEQ   29 (207)
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHHHH
Confidence            34567999999999999999999864

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>PRK13949 shikimate kinase; Provisional

Probab=97.10  E-value=0.00051  Score=48.58  Aligned_cols=22  Identities=32%  Similarity=0.575  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q 028300           16 KILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~   37 (211)
                      +|+++|++||||||+.+.+...
T Consensus         3 ~I~liG~~GsGKstl~~~La~~   24 (169)
T PRK13949          3 RIFLVGYMGAGKTTLGKALARE   24 (169)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            7999999999999999988754

>PRK10646 ADP-binding protein; Provisional

Probab=97.09  E-value=0.0042  Score=42.89  Aligned_cols=23  Identities=35%  Similarity=0.603  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCC
Q 028300           16 KILLIGDSGVGKSSLLVSFISSS   38 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~~   38 (211)
                      -|++-|+-|+|||||++.+...-
T Consensus        30 vi~L~GdLGaGKTtf~rgl~~~L   52 (153)
T PRK10646         30 VIYLYGDLGAGKTTFSRGFLQAL   52 (153)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHc
Confidence            48899999999999999998653

>PRK01889 GTPase RsgA; Reviewed

Probab=97.07  E-value=0.00057  Score=54.19  Aligned_cols=25  Identities=40%  Similarity=0.693  Sum_probs=21.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhhCCC
Q 028300           15 FKILLIGDSGVGKSSLLVSFISSSV   39 (211)
Q Consensus        15 ~~I~v~G~~~~GKssli~~l~~~~~   39 (211)
                      -+++++|.+|+|||||++.+.+...
T Consensus       196 ~~~~lvG~sgvGKStLin~L~g~~~  220 (356)
T PRK01889        196 KTVALLGSSGVGKSTLVNALLGEEV  220 (356)
T ss_pred             CEEEEECCCCccHHHHHHHHHHhcc
Confidence            3799999999999999999987543

>cd01131 PilT Pilus retraction ATPase PilT

Probab=97.07  E-value=0.0021  Score=46.63  Aligned_cols=22  Identities=36%  Similarity=0.623  Sum_probs=19.5

Q ss_pred             EEEEcCCCCcHHHHHHHHhhCC
Q 028300           17 ILLIGDSGVGKSSLLVSFISSS   38 (211)
Q Consensus        17 I~v~G~~~~GKssli~~l~~~~   38 (211)
                      |+|.|++||||||+++.++...
T Consensus         4 ilI~GptGSGKTTll~~ll~~~   25 (198)
T cd01131           4 VLVTGPTGSGKSTTLAAMIDYI   25 (198)
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            7899999999999999887653

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=97.06  E-value=0.00052  Score=44.34  Aligned_cols=21  Identities=43%  Similarity=0.854  Sum_probs=18.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 028300           15 FKILLIGDSGVGKSSLLVSFI   35 (211)
Q Consensus        15 ~~I~v~G~~~~GKssli~~l~   35 (211)
                      -.++++|++|+|||||++.+.
T Consensus        16 e~v~I~GpSGsGKSTLl~~l~   36 (107)
T cd00820          16 VGVLITGDSGIGKTELALELI   36 (107)
T ss_pred             EEEEEEcCCCCCHHHHHHHhh
Confidence            468999999999999999876

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway

Probab=97.06  E-value=0.00046  Score=50.94  Aligned_cols=21  Identities=29%  Similarity=0.298  Sum_probs=19.0

Q ss_pred             EEEEcCCCCcHHHHHHHHhhC
Q 028300           17 ILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        17 I~v~G~~~~GKssli~~l~~~   37 (211)
                      |+|.|++|||||||++.|.+.
T Consensus         2 igI~G~sGSGKTTla~~L~~~   22 (220)
T cd02025           2 IGIAGSVAVGKSTTARVLQAL   22 (220)
T ss_pred             EEeeCCCCCCHHHHHHHHHHH
Confidence            789999999999999988864

The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.

>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell

Probab=97.06  E-value=0.0074  Score=42.74  Aligned_cols=84  Identities=12%  Similarity=0.020  Sum_probs=49.0

Q ss_pred             EEEEEeCCChhhhccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHH
Q 028300           63 KLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREE  142 (211)
Q Consensus        63 ~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~  142 (211)
                      .+.++|+|+.....  ....+..+|.+|++++.+.. ++..+.. +...+...   ......+|+|+.+.....  ..+.
T Consensus        64 d~viiD~p~~~~~~--~~~~l~~ad~viiv~~~~~~-s~~~~~~-~~~~~~~~---~~~~~~iv~N~~~~~~~~--~~~~  134 (179)
T cd02036          64 DYILIDSPAGIERG--FITAIAPADEALLVTTPEIS-SLRDADR-VKGLLEAL---GIKVVGVIVNRVRPDMVE--GGDM  134 (179)
T ss_pred             CEEEEECCCCCcHH--HHHHHHhCCcEEEEeCCCcc-hHHHHHH-HHHHHHHc---CCceEEEEEeCCcccccc--hhhH
Confidence            68999999754322  34556789999999987754 3444444 44444332   234577899999864322  1121


Q ss_pred             HHHHHHHcCCeEE
Q 028300          143 GIALAKEHGSLFL  155 (211)
Q Consensus       143 ~~~~~~~~~~~~~  155 (211)
                      ...+.+.++.+++
T Consensus       135 ~~~~~~~~~~~v~  147 (179)
T cd02036         135 VEDIEEILGVPLL  147 (179)
T ss_pred             HHHHHHHhCCCEE
Confidence            2333444565543

The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=97.05  E-value=0.00059  Score=48.54  Aligned_cols=24  Identities=33%  Similarity=0.483  Sum_probs=20.5

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHh
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFI   35 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~   35 (211)
                      ..--.++++|+.|+|||||++.++
T Consensus        19 ~~G~~~~l~G~nG~GKSTLl~~il   42 (176)
T cd03238          19 PLNVLVVVTGVSGSGKSTLVNEGL   42 (176)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHh
Confidence            344478999999999999999875

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>PLN02200 adenylate kinase family protein

Probab=97.04  E-value=0.00086  Score=49.98  Aligned_cols=26  Identities=19%  Similarity=0.460  Sum_probs=22.1

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhhC
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~~~   37 (211)
                      .....|+|+|+|||||||+...|...
T Consensus        41 ~~~~ii~I~G~PGSGKsT~a~~La~~   66 (234)
T PLN02200         41 KTPFITFVLGGPGSGKGTQCEKIVET   66 (234)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            34678999999999999999988743

>PRK14531 adenylate kinase; Provisional

Probab=97.04  E-value=0.00058  Score=48.92  Aligned_cols=24  Identities=21%  Similarity=0.511  Sum_probs=20.8

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhhC
Q 028300           14 SFKILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        14 ~~~I~v~G~~~~GKssli~~l~~~   37 (211)
                      ..+|+++|+|||||||+...+...
T Consensus         2 ~~~i~i~G~pGsGKsT~~~~la~~   25 (183)
T PRK14531          2 KQRLLFLGPPGAGKGTQAARLCAA   25 (183)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHH
Confidence            348999999999999999988644

>KOG2203 consensus GTP-binding protein [General function prediction only]

Probab=97.03  E-value=0.00034  Score=57.03  Aligned_cols=57  Identities=21%  Similarity=0.336  Sum_probs=38.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEEC---CEEEEEEEEeCCC
Q 028300           15 FKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVA---GKRLKLTIWDTAG   71 (211)
Q Consensus        15 ~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~D~~g   71 (211)
                      --|+|+|+..+|||||+|.|++..|..-....|...+.+.+++.   +....+.+.|+-|
T Consensus        38 hVVavmG~QSSGKSTLLN~LFgTnF~~MDA~~gRqQTTKGIWlar~~~i~p~i~vmDvEG   97 (772)
T KOG2203|consen   38 HVVAVMGSQSSGKSTLLNHLFGTNFREMDAFKGRQQTTKGIWLARCAGIEPCILVMDVEG   97 (772)
T ss_pred             eEEEEecCcccchHHHHHHHhccChHHHHhhhccccccchhhHHhhcCCCCceEEEeccc
Confidence            35799999999999999999999985554445544444444442   2222355667665

>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional

Probab=97.03  E-value=0.00077  Score=47.61  Aligned_cols=25  Identities=28%  Similarity=0.395  Sum_probs=21.7

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhhC
Q 028300           13 LSFKILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        13 ~~~~I~v~G~~~~GKssli~~l~~~   37 (211)
                      ...-++|+|++|||||||++++...
T Consensus         5 ~~~ii~ivG~sgsGKTTLi~~li~~   29 (173)
T PRK10751          5 MIPLLAIAAWSGTGKTTLLKKLIPA   29 (173)
T ss_pred             CceEEEEECCCCChHHHHHHHHHHH
Confidence            3457899999999999999999865

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.03  E-value=0.00055  Score=50.23  Aligned_cols=21  Identities=48%  Similarity=0.689  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhh
Q 028300           16 KILLIGDSGVGKSSLLVSFIS   36 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~   36 (211)
                      .|+++|++|+|||||++.+.+
T Consensus        32 ~VaiIG~SGaGKSTLLR~lng   52 (258)
T COG3638          32 MVAIIGPSGAGKSTLLRSLNG   52 (258)
T ss_pred             EEEEECCCCCcHHHHHHHHhc
Confidence            589999999999999999886

>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]

Probab=97.03  E-value=0.0014  Score=53.24  Aligned_cols=74  Identities=14%  Similarity=0.063  Sum_probs=52.6

Q ss_pred             hccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccC
Q 028300           82 YYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKT  161 (211)
Q Consensus        82 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~  161 (211)
                      .+..+|++|.++|+.++--|....  +...+..  ....+..++++||+||....+  .....++....+++++..||..
T Consensus       171 VlErSDivvqIVDARnPllfr~~d--Le~Yvke--~d~~K~~~LLvNKaDLl~~~q--r~aWa~YF~~~ni~~vf~SA~~  244 (562)
T KOG1424|consen  171 VLERSDIVVQIVDARNPLLFRSPD--LEDYVKE--VDPSKANVLLVNKADLLPPEQ--RVAWAEYFRQNNIPVVFFSALA  244 (562)
T ss_pred             HHhhcceEEEEeecCCccccCChh--HHHHHhc--cccccceEEEEehhhcCCHHH--HHHHHHHHHhcCceEEEEeccc
Confidence            578899999999999975433221  1222221  234577899999999976653  3445677888889999999877

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=97.01  E-value=0.00066  Score=48.76  Aligned_cols=24  Identities=33%  Similarity=0.596  Sum_probs=21.2

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhhC
Q 028300           14 SFKILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        14 ~~~I~v~G~~~~GKssli~~l~~~   37 (211)
                      .-.++++|++|+|||||++.+++.
T Consensus        25 g~~i~I~G~tGSGKTTll~aL~~~   48 (186)
T cd01130          25 RKNILISGGTGSGKTTLLNALLAF   48 (186)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhh
Confidence            347899999999999999998865

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP)

Probab=97.00  E-value=0.00052  Score=49.48  Aligned_cols=22  Identities=32%  Similarity=0.570  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q 028300           16 KILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~   37 (211)
                      +|+|+|+|||||||+...|...
T Consensus         1 ~I~i~G~pGsGKst~a~~La~~   22 (194)
T cd01428           1 RILLLGPPGSGKGTQAERLAKK   22 (194)
T ss_pred             CEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999998754

This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.

>PTZ00088 adenylate kinase 1; Provisional

Probab=97.00  E-value=0.00063  Score=50.47  Aligned_cols=24  Identities=33%  Similarity=0.588  Sum_probs=21.0

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhhC
Q 028300           14 SFKILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        14 ~~~I~v~G~~~~GKssli~~l~~~   37 (211)
                      ..+|+|+|+|||||||+...|...
T Consensus         6 ~mrIvl~G~PGsGK~T~a~~La~~   29 (229)
T PTZ00088          6 PLKIVLFGAPGVGKGTFAEILSKK   29 (229)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHH
Confidence            467999999999999999998643

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=96.99  E-value=0.00061  Score=51.10  Aligned_cols=21  Identities=33%  Similarity=0.515  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhh
Q 028300           16 KILLIGDSGVGKSSLLVSFIS   36 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~   36 (211)
                      -++++||.|+|||||++.+.+
T Consensus        30 i~~iiGpNG~GKSTLLk~l~g   50 (258)
T COG1120          30 ITGILGPNGSGKSTLLKCLAG   50 (258)
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            468999999999999999985

>PRK14532 adenylate kinase; Provisional

Probab=96.99  E-value=0.00069  Score=48.69  Aligned_cols=22  Identities=18%  Similarity=0.468  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q 028300           16 KILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~   37 (211)
                      +|+++|+|||||||+..+|...
T Consensus         2 ~i~~~G~pGsGKsT~a~~la~~   23 (188)
T PRK14532          2 NLILFGPPAAGKGTQAKRLVEE   23 (188)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6999999999999999999743

>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]

Probab=96.99  E-value=0.00066  Score=47.39  Aligned_cols=20  Identities=30%  Similarity=0.481  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 028300           16 KILLIGDSGVGKSSLLVSFI   35 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~   35 (211)
                      +|+|.|.||+||||+.++|.
T Consensus         2 ~I~ITGTPGvGKTT~~~~L~   21 (180)
T COG1936           2 LIAITGTPGVGKTTVCKLLR   21 (180)
T ss_pred             eEEEeCCCCCchHHHHHHHH
Confidence            69999999999999999988

>PRK08356 hypothetical protein; Provisional

Probab=96.97  E-value=0.00098  Score=48.26  Aligned_cols=22  Identities=18%  Similarity=0.341  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhh
Q 028300           15 FKILLIGDSGVGKSSLLVSFIS   36 (211)
Q Consensus        15 ~~I~v~G~~~~GKssli~~l~~   36 (211)
                      ..|+++|+|||||||+.+.|..
T Consensus         6 ~~i~~~G~~gsGK~t~a~~l~~   27 (195)
T PRK08356          6 MIVGVVGKIAAGKTTVAKFFEE   27 (195)
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999954

>TIGR01351 adk adenylate kinases

Probab=96.97  E-value=0.00058  Score=50.07  Aligned_cols=21  Identities=24%  Similarity=0.531  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhh
Q 028300           16 KILLIGDSGVGKSSLLVSFIS   36 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~   36 (211)
                      ||+|+|+|||||||+...|..
T Consensus         1 rI~i~G~pGsGKsT~a~~La~   21 (210)
T TIGR01351         1 RLVLLGPPGSGKGTQAKRIAE   21 (210)
T ss_pred             CEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999874

Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	211
1x3s_A	195	Crystal Structure Of Human Rab18 In Complex With Gp		1e-44
2rhd_A	175	Crystal Structure Of Cryptosporidium Parvum Small G		6e-42
3cph_A	213	Crystal Structure Of Sec4 In Complex With Rab-Gdi L		4e-40
3sfv_A	181	Crystal Structure Of The Gdp-Bound Rab1a S25n Mutan		1e-39
3tkl_A	196	Crystal Structure Of The Gtp-Bound Rab1a In Complex		1e-39
1z0a_A	174	Gdp-Bound Rab2a Gtpase Length = 174		6e-39
3jza_A	175	Crystal Structure Of Human Rab1b In Complex With Th		2e-38
4i1o_A	181	Crystal Structure Of The Legionella Pneumophila Gap		2e-38
2fol_A	191	Crystal Structure Of Human Rab1a In Complex With Gd		3e-38
2fu5_C	183	Structure Of Rab8 In Complex With Mss4 Length = 183		3e-38
4fmc_B	171	Espg-Rab1 Complex Length = 171		4e-38
1z0f_A	179	Gdp-Bound Rab14 Gtpase Length = 179		4e-38
4fmb_B	171	Vira-Rab1 Complex Structure Length = 171		4e-38
3l0i_B	199	Complex Structure Of Sidm/drra With The Wild Type R		6e-38
1g17_A	170	Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)		4e-37
2wwx_A	175	Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Ra		4e-37
1g16_A	170	Crystal Structure Of Sec4-Gdp Length = 170		4e-37
1ukv_Y	206	Structure Of Rabgdp-Dissociation Inhibitor In Compl		4e-37
3qbt_A	174	Crystal Structure Of Ocrl1 540-678 In Complex With		5e-37
4drz_A	196	Crystal Structure Of Human Rab14 Length = 196		5e-37
2eqb_A	174	Crystal Structure Of The Rab Gtpase Sec4p, The Sec2		6e-37
2g6b_A	180	Crystal Structure Of Human Rab26 In Complex With A		6e-37
2a5j_A	191	Crystal Structure Of Human Rab2b Length = 191		7e-37
2ocy_C	170	Complex Of The Guanine Exchange Factor Sec2p And Th		7e-37
2bcg_Y	206	Structure Of Doubly Prenylated Ypt1:gdi Complex Len		2e-36
4fmd_F	164	Espg-Rab1 Complex Structure At 3.05 A Length = 164		3e-36
1yzn_A	185	Gppnhp-Bound Ypt1p Gtpase Length = 185		3e-36
3rab_A	169	Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169		1e-35
1zbd_A	203	Structural Basis Of Rab Effector Specificity: Cryst		1e-35
3dz8_A	191	Crystal Structure Of Human Rab3b Gtpase Bound With		5e-35
2bmd_A	186	High Resolution Structure Of Gdp-Bound Human Rab4a		2e-34
2gf9_A	189	Crystal Structure Of Human Rab3d In Complex With Gd		3e-34
1yu9_A	175	Gppnhp-Bound Rab4a Length = 175		8e-34
3tw8_B	181	Gef Domain Of Dennd 1b In Complex With Rab Gtpase R		4e-33
1z0k_A	172	Structure Of Gtp-Bound Rab4q67l Gtpase In Complex W		7e-33
2ew1_A	201	Crystal Structure Of Rab30 In Complex With A Gtp An		8e-33
2il1_A	192	Crystal Structure Of A Predicted Human Gtpase In Co		1e-32
2hup_A	201	Crystal Structure Of Human Rab43 In Complex With Gd		2e-31
3cpj_B	223	Crystal Structure Of Ypt31 In Complex With Yeast Ra		3e-31
1yzk_A	184	Gppnhp Bound Rab11 Gtpase Length = 184		7e-31
1oiv_A	191	X-Ray Structure Of The Small G Protein Rab11a In Co		2e-30
2o52_A	200	Crystal Structure Of Human Rab4b In Complex With Gd		2e-30
2f9l_A	199	3d Structure Of Inactive Human Rab11b Gtpase Length		2e-30
2hv8_A	172	Crystal Structure Of Gtp-Bound Rab11 In Complex Wit		6e-30
1oiw_A	191	X-ray Structure Of The Small G Protein Rab11a In Co		2e-29
3bfk_A	181	Crystal Structure Of Plasmodium Falciparum Rab11a I		1e-28
2gzd_A	173	Crystal Structure Of Rab11 In Complex With Rab11-Fi		2e-28
2d7c_A	167	Crystal Structure Of Human Rab11 In Complex With Fi		3e-28
4fmc_F	117	Espg-Rab1 Complex Length = 117		7e-28
3rwm_B	185	Crystal Structure Of Ypt32 In Complex With Gppnhp L		2e-27
2oil_A	193	Crystal Structure Of Human Rab25 In Complex With Gd		2e-27
1ek0_A	170	Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 17		3e-27
3tso_A	178	Structure Of The Cancer Associated Rab25 Protein In		5e-27
2hei_A	179	Crystal Structure Of Human Rab5b In Complex With Gd		8e-25
2p5s_A	199	Rab Domain Of Human Rasef In Complex With Gdp Lengt		1e-24
1z08_A	170	Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170		2e-24
1huq_A	164	1.8a Crystal Structure Of The Monomeric Gtpase Rab5		2e-24
2f7s_A	217	The Crystal Structure Of Human Rab27b Bound To Gdp		3e-24
4dkx_A	216	Crystal Structure Of The Rab 6a'(Q72l) Length = 216		7e-24
3bc1_A	195	Crystal Structure Of The Complex Rab27a-slp2a Lengt		8e-24
1n6h_A	170	Crystal Structure Of Human Rab5a Length = 170		1e-23
1tu3_A	171	Crystal Structure Of Rab5 Complex With Rabaptin5 C-		1e-23
2fe4_A	171	The Crystal Structure Of Human Neuronal Rab6b In It		1e-23
1yzt_A	184	Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Leng		1e-23
1tu4_A	171	Crystal Structure Of Rab5-Gdp Complex Length = 171		1e-23
1z07_A	166	Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166		1e-23
1z0d_A	167	Gdp-bound Rab5c Gtpase Length = 167		2e-23
1yzu_A	170	Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Leng		2e-23
1n6i_A	170	Crystal Structure Of Human Rab5a A30p Mutant Comple		2e-23
1n6o_A	170	Crystal Structure Of Human Rab5a A30k Mutant Comple		2e-23
2y8e_A	179	Crystal Structure Of D. Melanogaster Rab6 Gtpase Bo		2e-23
3bbp_A	211	Rab6-Gtp:gcc185 Rab Binding Domain Complex Length =		3e-23
1n6p_A	170	Crystal Structure Of Human Rab5a A30e Mutant Comple		3e-23
1n6n_A	170	Crystal Structure Of Human Rab5a A30r Mutant Comple		3e-23
1yzq_A	170	Gppnhp-Bound Rab6 Gtpase Length = 170		4e-23
1n6r_A	170	Crystal Structure Of Human Rab5a A30l Mutant Comple		4e-23
1d5c_A	162	Crystal Structure Of Plasmodium Falciparum Rab6 Com		4e-23
2ocb_A	180	Crystal Structure Of Human Rab9b In Complex With A		4e-23
2efc_B	181	Ara7-GdpATVPS9A Length = 181		5e-23
2if0_A	200	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		5e-23
2iez_A	220	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		5e-23
1wms_A	177	High Resolution Crystal Structure Of Human Rab9 Gtp		1e-22
1s8f_A	177	Crystal Structure Of Rab9 Complexed To Gdp Reveals		1e-22
3mjh_A	168	Crystal Structure Of Human Rab5a In Complex With Th		1e-22
1yzl_A	179	Gppnhp-Bound Rab9 Gtpase Length = 179		1e-22
2g77_B	198	Crystal Structure Of Gyp1 Tbc Domain In Complex Wit		1e-22
2gil_A	162	Structure Of The Extremely Slow Gtpase Rab6a In The		2e-22
1z06_A	189	Gppnhp-Bound Rab33 Gtpase Length = 189		2e-22
2fg5_A	192	Crystal Structure Of Human Rab31 In Complex With A		3e-22
2zet_A	203	Crystal Structure Of The Small Gtpase Rab27b Comple		3e-22
2iey_A	195	Crystal Structure Of Mouse Rab27b Bound To Gdp In H		3e-22
1yvd_A	169	Gppnhp-Bound Rab22 Gtpase Length = 169		8e-22
3cwz_A	188	Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188		1e-21
1ky2_A	182	Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182		4e-21
1vg0_B	207	The Crystal Structures Of The Rep-1 Protein In Comp		5e-21
3law_A	207	Structure Of Gtp-Bound L129f Mutant Rab7 Length = 2		5e-21
1vg1_A	185	Gdp-bound Rab7 Length = 185		7e-21
1z0j_A	170	Structure Of Gtp-Bound Rab22q64l Gtpase In Complex		7e-21
1t91_A	207	Crystal Structure Of Human Small Gtpase Rab7(Gtp) L		4e-20
1z22_A	168	Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Spac		2e-18
2hxs_A	178	Crystal Structure Of Rab28a Gtpase In The Inactive		5e-18
2bku_A	177	Kap95p:rangtp Complex Length = 177		6e-18
1byu_A	216	Canine Gdp-Ran Length = 216		7e-18
3brw_D	167	Structure Of The Rap-Rapgap Complex Length = 167		7e-18
4dxa_A	169	Co-Crystal Structure Of Rap1 In Complex With Krit1		8e-18
2fn4_A	181	The Crystal Structure Of Human Ras-Related Protein,		2e-17
4djt_A	218	Crystal Structure Of A Nuclear Gtp-Binding Protein		3e-17
1c1y_A	167	Crystal Structure Of Rap.Gmppnp In Complex With The		4e-17
1gua_A	167	Human Rap1a, Residues 1-167, Double Mutant (E30d,K3		5e-17
3gj4_A	221	Crystal Structure Of Human Rangdp-Nup153znf3 Comple		6e-17
3gj0_A	221	Crystal Structure Of Human Rangdp Length = 221		6e-17
1wa5_A	176	Crystal Structure Of The Exportin Cse1p Complexed W		8e-17
1qg2_A	216	Canine Gdp-Ran R76e Mutant Length = 216		8e-17
1rrp_A	204	Structure Of The Ran-Gppnhp-Ranbd1 Complex Length =		8e-17
1a2k_C	216	Gdpran-Ntf2 Complex Length = 216		9e-17
3ea5_A	216	Kap95p Binding Induces The Switch Loops Of Rangdp T		9e-17
3t5g_A	181	Structure Of Fully Modified Farnesylated Rheb In Co		9e-17
1xtq_A	177	Structure Of Small Gtpase Human Rheb In Complex Wit		1e-16
2l0x_A	169	Solution Structure Of The 21 Kda Gtpase Rheb Bound		1e-16
3sea_A	167	Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bo		1e-16
1qbk_C	216	Structure Of The Karyopherin Beta2-ran Gppnhp Nucle		1e-16
1qg4_A	216	Canine Gdp-Ran F72y Mutant Length = 216		2e-16
3nc1_C	182	Crystal Structure Of The Crm1-Rangtp Complex Length		2e-16
3nby_C	176	Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclea		6e-16
2kwi_A	178	Ralb-Rlip76 (Ralbp1) Complex Length = 178		6e-16
2ke5_A	174	Solution Structure And Dynamics Of The Small Gtpase		7e-16
3ran_A	216	Canine Gdp-Ran Q69l Mutant Length = 216		8e-16
2j1l_A	214	Crystal Structure Of Human Rho-Related Gtp-Binding		1e-15
3m1i_A	219	Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex		1e-15
2ery_A	172	The Crystal Structure Of The Ras Related Protein Rr		2e-15
2bov_A	206	Molecular Recognition Of An Adp-Ribosylating Clostr		2e-15
2a78_A	187	Crystal Structure Of The C3bot-Rala Complex Reveals		2e-15
1uad_A	175	Crystal Structure Of The Rala-gppnhp-sec5 Ral-bindi		2e-15
2x19_A	172	Crystal Structure Of Importin13 - Rangtp Complex Le		2e-15
3icq_B	171	Karyopherin Nuclear State Length = 171		3e-15
1u8y_A	168	Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal		3e-15
1zc3_A	175	Crystal Structure Of The Ral-Binding Domain Of Exo8		2e-14
2nty_C	180	Rop4-Gdp-Prone8 Length = 180		4e-14
2j0v_A	212	The Crystal Structure Of Arabidopsis Thaliana Rac7-		5e-14
4dso_A	189	Small-Molecule Ligands Bind To A Distinct Pocket In		6e-14
4epr_A	170	Discovery Of Small Molecules That Bind To K-Ras And		8e-14
3clv_A	208	Crystal Structure Of Rab5a From Plasmodium Falcipar		1e-13
2atx_A	194	Crystal Structure Of The Tc10 Gppnhp Complex Length		2e-13
1clu_A	166	H-Ras Complexed With Diaminobenzophenone-Beta,Gamma		2e-13
3msx_A	180	Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With		2e-13
3lw8_A	185	Shigella Ipgb2 In Complex With Human Rhoa, Gdp And		3e-13
1xcg_B	178	Crystal Structure Of Human Rhoa In Complex With DhP		3e-13
1agp_A	166	Three-Dimensional Structures And Properties Of A Tr		3e-13
1tx4_B	177	RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 177		3e-13
1cc0_A	190	Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Le		3e-13
2wbl_C	180	Three-Dimensional Structure Of A Binary Rop-Prone C		3e-13
1s1c_A	183	Crystal Structure Of The Complex Between The Human		3e-13
3kz1_E	182	Crystal Structure Of The Complex Of Pdz-Rhogef DhPH		3e-13
3bwd_D	182	Crystal Structure Of The Plant Rho Protein Rop5 Len		3e-13
1ow3_B	193	Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With		3e-13
1lb1_B	192	Crystal Structure Of The Dbl And Pleckstrin Homolog		3e-13
421p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		3e-13
3con_A	190	Crystal Structure Of The Human Nras Gtpase Bound Wi		4e-13
1jah_A	166	H-Ras P21 Protein Mutant G12p, Complexed With Guano		4e-13
3tvd_A	193	Crystal Structure Of Mouse Rhoa-Gtp Complex Length		4e-13
4f38_A	195	Crystal Structure Of Geranylgeranylated Rhoa In Com		4e-13
1x86_B	196	Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-A		4e-13
1cxz_A	182	Crystal Structure Of Human Rhoa Complexed With The		4e-13
2gco_A	201	Crystal Structure Of The Human Rhoc-gppnhp Complex		5e-13
1z2c_A	193	Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With		5e-13
2gcn_A	201	Crystal Structure Of The Human Rhoc-Gdp Complex Len		5e-13
1kmq_A	184	Crystal Structure Of A Constitutively Activated Rho		2e-12
1dpf_A	180	Crystal Structure Of A Mg-Free Form Of Rhoa Complex		2e-12
2fv8_A	207	The Crystal Structure Of Rhob In The Gdp-Bound Stat		2e-12
4epx_A	170	Discovery Of Small Molecules That Bind To K-Ras And		2e-12
4ept_A	170	Discovery Of Small Molecules That Bind To K-Ras And		2e-12
4q21_A	189	Molecular Switch For Signal Transduction: Structura		3e-12
2vrw_A	184	Critical Structural Role For The Ph And C1 Domains		4e-12
1i4d_D	192	Crystal Structure Analysis Of Rac1-Gdp Complexed Wi		5e-12
2c5l_A	173	Structure Of Plc Epsilon Ras Association Domain Wit		5e-12
4efm_A	171	Crystal Structure Of H-Ras G12v In Complex With Gpp		6e-12
4efl_A	171	Crystal Structure Of H-Ras Wt In Complex With Gppnh		6e-12
3gft_A	187	Human K-Ras In Complex With A Gtp Analogue Length =		6e-12
1mh1_A	186	Small G-Protein Length = 186		7e-12
1g4u_R	184	Crystal Structure Of The Salmonella Tyrosine Phosph		8e-12
221p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		8e-12
3oes_A	201	Crystal Structure Of The Small Gtpase Rhebl1 Length		8e-12
3ref_B	194	Crystal Structure Of Ehrho1 Bound To Gdp And Magnes		8e-12
1hh4_A	192	Rac1-Rhogdi Complex Involved In Nadph Oxidase Activ		8e-12
2h7v_A	188	Co-crystal Structure Of Ypka-rac1 Length = 188		9e-12
3lo5_A	166	Crystal Structure Of The Dominant Negative S17n Mut		9e-12
3k9n_A	166	Allosteric Modulation Of H-Ras Gtpase Length = 166		9e-12
1wq1_R	166	Ras-Rasgap Complex Length = 166		9e-12
1rvd_A	166	H-Ras Complexed With Diaminobenzophenone-Beta,Gamma		9e-12
4gzm_A	204	Crystal Structure Of Rac1 F28l Mutant Length = 204		9e-12
3v4f_A	166	H-Ras Peg 400CACL2, ORDERED OFF Length = 166		9e-12
3b13_B	184	Crystal Structure Of The Dhr-2 Domain Of Dock2 In C		9e-12
1he1_C	176	Crystal Structure Of The Complex Between The Gap Do		9e-12
1lfd_B	167	Crystal Structure Of The Active Ras Protein Complex		1e-11
3ddc_A	166	Crystal Structure Of Nore1a In Complex With Ras Len		1e-11
3th5_A	204	Crystal Structure Of Wild-Type Rac1 Length = 204		1e-11
2fju_A	178	Activated Rac1 Bound To Its Effector Phospholipase		1e-11
6q21_A	171	Molecular Switch For Signal Transduction: Structura		1e-11
2q21_A	171	Crystal Structures At 2.2 Angstroms Resolution Of T		1e-11
2cl0_X	166	Crystal Structure Analysis Of A Fluorescent Form Of		1e-11
3sua_A	184	Crystal Structure Of The Intracellular Domain Of Pl		1e-11
1foe_B	177	Crystal Structure Of Rac1 In Complex With The Guani		1e-11
2cld_X	166	Crystal Structure Analysis Of A Fluorescent Form Of		1e-11
3rap_R	167	The Small G Protein Rap2 In A Non Catalytic Complex		1e-11
2yin_C	196	Structure Of The Complex Between Dock2 And Rac1. Le		1e-11
3sbd_A	187	Crystal Structure Of Rac1 P29s Mutant Length = 187		1e-11
3i3s_R	166	Crystal Structure Of H-Ras With Thr50 Replaced By I		1e-11
4dvg_A	188	Crystal Structure Of E. Histolytica Formin1 Bound T		1e-11
3kkm_A	172	Crystal Structure Of H-Ras T35s In Complex With Gpp		1e-11
2atv_A	196	The Crystal Structure Of Human Rerg In The Gdp Boun		2e-11
2ic5_A	180	Crystal Structure Of Human Rac3 Grown In The Presen		2e-11
2g0n_A	179	The Crystal Structure Of The Human Rac3 In Complex		2e-11
2quz_A	166	Crystal Structure Of The Activating H-Rask117r Muta		2e-11
2x1v_A	166	Crystal Structure Of The Activating H-Ras I163f Mut		2e-11
2c2h_A	192	Crystal Structure Of The Human Rac3 In Complex With		2e-11
1iaq_A	166	C-H-Ras P21 Protein Mutant With Thr 35 Replaced By		2e-11
1lf0_A	166	Crystal Structure Of Rasa59g In The Gtp-Bound Form		3e-11
621p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		3e-11
2rgb_A	166	Crystal Structure Of H-Rasq61k-Gppnhp Length = 166		3e-11
1e96_A	192	Structure Of The RacP67PHOX COMPLEX Length = 192		3e-11
521p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		3e-11
1xj0_A	166	Crystal Structure Of The Gdp-Bound Form Of The Rasg		4e-11
1i4t_D	192	Crystal Structure Analysis Of Rac1-Gmppnp In Comple		4e-11
1xcm_A	167	Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mu		4e-11
1nvv_Q	166	Structural Evidence For Feedback Activation By Rasg		4e-11
4efn_A	171	Crystal Structure Of H-Ras Q61l In Complex With Gpp		5e-11
1zw6_A	166	Crystal Structure Of The Gtp-Bound Form Of Rasq61g		7e-11
3ryt_C	180	The Plexin A1 Intracellular Region In Complex With		7e-11
1zvq_A	166	Structure Of The Q61g Mutant Of Ras In The Gdp-Boun		7e-11
4gzl_A	204	Crystal Structure Of Rac1 Q61l Mutant Length = 204		7e-11
721p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		8e-11
2rgc_A	166	Crystal Structure Of H-Rasq61v-Gppnhp Length = 166		8e-11
2rga_A	166	Crystal Structure Of H-Rasq61i-Gppnhp Length = 166		9e-11
2erx_A	172	Crystal Structure Of Diras2 In Complex With Gdp And		1e-10
2q3h_A	201	The Crystal Structure Of Rhoua In The Gdp-bound Sta		1e-10
3a58_B	188	Crystal Structure Of Sec3p - Rho1p Complex From Sac		1e-10
2nzj_A	175	The Crystal Structure Of Rem1 In Complex With Gdp L		1e-10
3pir_A	183	Crystal Structure Of M-Rasd41e In Complex With Gppn		5e-10
2wkp_A	332	Structure Of A Photoactivatable Rac1 Containing Lov		5e-10
3kkp_A	183	Crystal Structure Of M-Ras P40d In Complex With Gpp		5e-10
2wkr_A	332	Structure Of A Photoactivatable Rac1 Containing The		5e-10
2wkq_A	332	Structure Of A Photoactivatable Rac1 Containing The		5e-10
1x1r_A	178	Crystal Structure Of M-Ras In Complex With Gdp Leng		6e-10
2gf0_A	199	The Crystal Structure Of The Human Diras1 Gtpase In		6e-10
3kko_A	183	Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX		7e-10
1ryf_A	203	Alternative Splicing Of Rac1 Generates Rac1b, A Sel		8e-10
4did_A	193	Crystal Structure Of Salmonella Effector N-Terminal		8e-10
2cls_A	198	The Crystal Structure Of The Human Rnd1 Gtpase In T		1e-09
3q3j_B	214	Crystal Structure Of Plexin A2 Rbd In Complex With		1e-09
2rex_B	197	Crystal Structure Of The Effector Domain Of Plxnb1		1e-09
1ds6_A	192	Crystal Structure Of A Rac-Rhogdi Complex Length =		1e-09
2w2t_A	185	Rac2 (G12v) In Complex With Gdp Length = 185		1e-09
1doa_A	191	Structure Of The Rho Family Gtp-Binding Protein Cdc		1e-09
2dfk_B	194	Crystal Structure Of The Cdc42-Collybistin Ii Compl		1e-09
2wm9_B	190	Structure Of The Complex Between Dock9 And Cdc42. L		2e-09
1z6x_A	180	Structure Of Human Adp-Ribosylation Factor 4 Length		2e-09
3vhl_B	195	Crystal Structure Of The Dhr-2 Domain Of Dock8 In C		2e-09
2w2v_A	184	Rac2 (G12v) In Complex With Gtpgs Length = 184		2e-09
1aje_A	194	Cdc42 From Human, Nmr, 20 Structures Length = 194		2e-09
2odb_A	192	The Crystal Structure Of Human Cdc42 In Complex Wit		2e-09
1grn_A	191	Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX.		2e-09
2qrz_A	189	Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is		2e-09
1kz7_B	188	Crystal Structure Of The DhPH FRAGMENT OF MURINE DB		2e-09
1a4r_B	191	G12v Mutant Of Human Placental Cdc42 Gtpase In The		3e-09
1mr3_F	181	Saccharomyces Cerevisiae Adp-Ribosylation Factor 2		3e-09
2v55_B	200	Mechanism Of Multi-site Phosphorylation From A Rock		3e-09
1an0_A	190	Cdc42hs-Gdp Complex Length = 190		4e-09
1gwn_A	205	The Crystal Structure Of The Core Domain Of RhoeRND		4e-09
1m7b_A	184	Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATI		5e-09
3tjz_A	164	Crystal Structure Of Arf1 Bound To The GammaZETA-Co		7e-09
2k5u_A	181	Solution Structure Of Myirstoylated Yeast Arf1 Prot		7e-09
1cee_A	179	Solution Structure Of Cdc42 In Complex With The Gtp		8e-09
3gcg_A	182	Crystal Structure Of Map And Cdc42 Complex Length =		8e-09
1gzs_A	180	Crystal Structure Of The Complex Between The Gef Do		9e-09
2ase_A	178	Nmr Structure Of The F28l Mutant Of Cdc42hs Length		1e-08
1ees_A	178	Solution Structure Of Cdc42hs Complexed With A Pept		1e-08
3eg5_A	178	Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex W		1e-08
1cf4_A	184	Cdc42ACK GTPASE-Binding Domain Complex Length = 184		2e-08
1nf3_A	195	Structure Of Cdc42 In A Complex With The Gtpase-Bin		2e-08
2kb0_A	178	Cdc42(T35a) Length = 178		4e-08
3lvr_E	497	The Crystal Structure Of Asap3 In Complex With Arf6		4e-08
3qbv_A	178	Structure Of Designed Orthogonal Interaction Betwee		4e-08
3q72_A	166	Crystal Structure Of Rad G-Domain-Gtp Analog Comple		4e-08
1am4_D	177	Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. S		4e-08
2gjs_A	176	The Crystal Structure Of Human Rrad In Complex With		4e-08
2dpx_A	174	Crystal Structure Of Human Rad Gtpase Length = 174		4e-08
4fme_C	160	Espg-Rab1-Arf6 Complex Length = 160		1e-07
1e0s_A	174	Small G Protein Arf6-Gdp Length = 174		1e-07
2a5d_A	175	Structural Basis For The Activation Of Cholera Toxi		1e-07
3n5c_A	162	Crystal Structure Of Arf6delta13 Complexed With Gdp		1e-07
3o47_A	329	Crystal Structure Of Arfgap1-Arf1 Fusion Protein Le		2e-07
2b6h_A	192	Structure Of Human Adp-Ribosylation Factor 5 Length		2e-07
1re0_A	164	Structure Of Arf1-Gdp Bound To Sec7 Domain Complexe		2e-07
1rrg_A	181	Non-Myristoylated Rat Adp-Ribosylation Factor-1 Com		2e-07
1hur_A	180	Human Adp-Ribosylation Factor 1 Complexed With Gdp,		2e-07
1moz_A	183	Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharo		3e-07
3aq4_A	184	Molecular Insights Into Plant Cell Proliferation Di		3e-07
2ht6_A	174	Crystal Structure Of Human Gem G-Domain Bound To Gd		4e-07
3rd1_A	178	Structure Of An Adp Ribosylation Factor From Entamo		4e-07
3pcr_B	162	Structure Of Espg-Arf6 Complex Length = 162		4e-07
2g3y_A	211	Crystal Structure Of The Human Small Gtpase Gem Len		5e-07
2w83_A	165	Crystal Structure Of The Arf6 Gtpase In Complex Wit		5e-07
3vhx_A	172	The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesi		5e-07
1j2j_A	166	Crystal Structure Of Gga1 Gat N-terminal Region In		6e-07
2cjw_B	192	Crystal Structure Of The Small Gtpase Gem (Gemdndca		6e-07
2cjw_A	192	Crystal Structure Of The Small Gtpase Gem (Gemdndca		7e-07
3cbq_A	195	Crystal Structure Of The Human Rem2 Gtpase With Bou		8e-07
2a5g_A	175	Cholera Toxin A1 Subunit Bound To Arf6(Q67l) Length		1e-06
3lrp_A	181	Crystal Structure Of Plasmodium Falciparum Adp-Ribo		1e-06
2ksq_A	181	The Myristoylated Yeast Arf1 In A Gtp And Bicelle B		2e-06
3c5c_A	187	Crystal Structure Of Human Ras-Like, Family 12 Prot		8e-06
1yzg_A	179	Structure Of Human Adp-ribosylation Factor-like 8 L		4e-05
3doe_A	192	Complex Of Arl2 And Bart, Crystal Form 1 Length = 1		6e-05
4goj_A	189	The Crystal Structure Of Full Length Arl3gppnhp In		6e-05
1ksg_A	186	Complex Of Arl2 And Pde Delta, Crystal Form 1 Lengt		6e-05
1fzq_A	181	Crystal Structure Of Murine Arl3-Gdp Length = 181		7e-05
1ksh_A	186	Complex Of Arl2 And Pde Delta, Crystal Form 2 (Nati		7e-05
1r4a_A	165	Crystal Structure Of Gtp-Bound Adp-Ribosylation Fac		8e-05
3q85_A	169	Crystal Structure Of Rem2 G-Domain -Gtp Analog Comp		1e-04
2al7_A	186	Structure Of Human Adp-Ribosylation Factor-Like 10c		1e-04
4aii_A	180	Crystal Structure Of The Rat Rem2 Gtpase - G Domain		2e-04
3bh7_A	164	Crystal Structure Of The Rp2-Arl3 Complex Bound To		2e-04
2h16_A	183	Structure Of Human Adp-Ribosylation Factor-Like 5 (		3e-04
2h17_A	181	Structure Of Human Adp-Ribosylation Factor-Like 5 (		3e-04
1zj6_A	187	Crystal Structure Of Human Arl5 Length = 187		3e-04
1z6y_A	179	Structure Of Human Adp-Ribosylation Factor-Like 5 L		3e-04
1ksj_A	186	Complex Of Arl2 And Pde Delta, Crystal Form 2 (Seme		5e-04
4gok_B	169	The Crystal Structure Of Arl2gppnhp In Complex With		5e-04
4dcn_A	166	Crystal Structure Analysis Of The Arfaptin2 Bar Dom		6e-04
1zd9_A	188	Structure Of Human Adp-Ribosylation Factor-Like 10b		7e-04
2h57_A	190	Crystal Structure Of Human Adp-Ribosylation Factor-		8e-04
2h18_A	193	Structure Of Human Adp-Ribosylation Factor-Like 10b		8e-04

>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp Length = 195

Iteration: 1
 Score =  176 bits (445), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 92/172 (53%), Positives = 116/172 (67%), Gaps = 3/172 (1%)
Query: 14  SFKILLIGDSGVGKXXXXXXXXXXXXX-XXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQ 72
           + KIL+IG+SGVGK                  TIGVDFK+K ++V G + KL IWDTAGQ
Sbjct: 15  TLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQ 74
Query: 73  ERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDR 132
           ERFRTLT SYYRGAQG+ILVYDVTRR+TF  L D W  E++ Y T  D V  LVGNK+D+
Sbjct: 75  ERFRTLTPSYYRGAQGVILVYDVTRRDTFVKL-DNWLNELETYCTRNDIVNXLVGNKIDK 133
Query: 133 DSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIMEVPSLLE 184
           ++ R V R EG+  A++H  LF+E SAKT + V+  FE+L  KI++ P L E
Sbjct: 134 EN-REVDRNEGLKFARKHSXLFIEASAKTCDGVQCAFEELVEKIIQTPGLWE 184

>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase Rab1a Length = 175

Iteration: 1
 Score =  166 bits (421), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 90/172 (52%), Positives = 114/172 (66%), Gaps = 3/172 (1%)
Query: 6   GQSNSYDLSFKILLIGDSGVGKX-XXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKL 64
           G +  YD  FK+LLIGDSGVGK                  TIGVDFKI+ +++  K +KL
Sbjct: 1   GMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTDSYISTIGVDFKIRTISLENKTVKL 60
Query: 65  TIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKM 124
            IWDTAGQERFRT+TSSYYRGA GII+VYDVT R++F N+   W +E+D Y+  ++  K+
Sbjct: 61  QIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDRDSFDNVKQ-WIQEIDRYAM-ENVNKL 118
Query: 125 LVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKI 176
           LVGNK D  S+RVV+ +EG  LA  HG  F+E SAK   NVEQ F  +A +I
Sbjct: 119 LVGNKCDLVSKRVVTSDEGRELADSHGIKFIETSAKNAYNVEQAFHTMAGEI 170

>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi Length = 213

Iteration: 1
 Score =  160 bits (405), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 92/179 (51%), Positives = 117/179 (65%), Gaps = 4/179 (2%)
Query: 1   MGSSSGQSNSYDLSFKILLIGDSGVGKX-XXXXXXXXXXXXXXXPTIGVDFKIKLLTVAG 59
           + +SSG   SYD   KILLIGDSGVGK                  TIG+DFKIK + + G
Sbjct: 7   VSASSGNGKSYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDING 66
Query: 60  KRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQ 119
           K++KL +WDTAGQERFRT+T++YYRGA GIILVYDVT   TFTN+   W K V+ ++ N 
Sbjct: 67  KKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQ-WFKTVNEHA-ND 124
Query: 120 DCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIME 178
           +   +LVGNK D ++ RVV+ ++G ALAKE G  F+E SAK  +NV + F  LA  I E
Sbjct: 125 EAQLLLVGNKSDMET-RVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQE 182

>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In Complex With The Coiled-Coil Domain Of Lida From Legionella Pneumophila Length = 181

Iteration: 1
 Score =  159 bits (402), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 88/177 (49%), Positives = 112/177 (63%), Gaps = 3/177 (1%)
Query: 1   MGSSSGQSNSYDLSFKILLIGDSGVGKX-XXXXXXXXXXXXXXXPTIGVDFKIKLLTVAG 59
           +GS S  +  YD  FK+LLIGDSGVGK                  TIGVDFKI+ + + G
Sbjct: 3   LGSMSSMNPEYDYLFKLLLIGDSGVGKNCLLLRFADDTYTESYISTIGVDFKIRTIELDG 62
Query: 60  KRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQ 119
           K +KL IWDTAGQERFRT+TSSYYRGA GII+VYDVT +E+F N+   W +E+D Y++ +
Sbjct: 63  KTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLQEIDRYAS-E 120
Query: 120 DCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKI 176
           +  K+LVGNK D  +++VV        A   G  FLE SAK   NVEQ F  +A +I
Sbjct: 121 NVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 177

>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With The Coiled- Coil Domain Of Lida From Legionella Pneumophila Length = 196

Iteration: 1
 Score =  159 bits (402), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 88/177 (49%), Positives = 112/177 (63%), Gaps = 3/177 (1%)
Query: 1   MGSSSGQSNSYDLSFKILLIGDSGVGKX-XXXXXXXXXXXXXXXPTIGVDFKIKLLTVAG 59
           +GS S  +  YD  FK+LLIGDSGVGK                  TIGVDFKI+ + + G
Sbjct: 3   LGSMSSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDG 62
Query: 60  KRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQ 119
           K +KL IWDTAGQERFRT+TSSYYRGA GII+VYDVT +E+F N+   W +E+D Y++ +
Sbjct: 63  KTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLQEIDRYAS-E 120
Query: 120 DCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKI 176
           +  K+LVGNK D  +++VV        A   G  FLE SAK   NVEQ F  +A +I
Sbjct: 121 NVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 177

>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase Length = 174

Iteration: 1
 Score =  157 bits (396), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 82/171 (47%), Positives = 113/171 (66%), Gaps = 3/171 (1%)
Query: 9   NSYDLSFKILLIGDSGVGKXXXXXXXXXXXXXXXXP-TIGVDFKIKLLTVAGKRLKLTIW 67
           ++Y   FK ++IGD+GVGK                  TIGV+F  +++T+ GK++KL IW
Sbjct: 5   SAYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIW 64
Query: 68  DTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVG 127
           DTAGQE FR++T SYYRGA G +LVYD+TRR+TF +L+  W ++   +S N + V ML+G
Sbjct: 65  DTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLT-TWLEDARQHS-NSNMVIMLIG 122
Query: 128 NKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIME 178
           NK D +S R V +EEG A A+EHG +F+E SAKT  NVE+ F   A +I E
Sbjct: 123 NKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYE 173

>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA Length = 175

Iteration: 1
 Score =  155 bits (392), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 85/172 (49%), Positives = 108/172 (62%), Gaps = 3/172 (1%)
Query: 6   GQSNSYDLSFKILLIGDSGVGKX-XXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKL 64
           G    YD  FK+LLIGDSGVGK                  TIGVDFKI+ + + GK +KL
Sbjct: 1   GHMPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKL 60
Query: 65  TIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKM 124
            IWDTAGQERFRT+TSSYYRGA GII+VYDVT +E++ N+   W +E+D Y++ ++  K+
Sbjct: 61  QIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQ-WLQEIDRYAS-ENVNKL 118
Query: 125 LVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKI 176
           LVGNK D  +++VV        A   G  FLE SAK   NVEQ F  +A +I
Sbjct: 119 LVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEI 170

>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain Of Lepb In Complex With Rab1b Bound To Gdp And Bef3 Length = 181

Iteration: 1
 Score =  155 bits (391), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 85/172 (49%), Positives = 108/172 (62%), Gaps = 3/172 (1%)
Query: 6   GQSNSYDLSFKILLIGDSGVGKX-XXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKL 64
           G    YD  FK+LLIGDSGVGK                  TIGVDFKI+ + + GK +KL
Sbjct: 1   GHMPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKL 60
Query: 65  TIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKM 124
            IWDTAGQERFRT+TSSYYRGA GII+VYDVT +E++ N+   W +E+D Y++ ++  K+
Sbjct: 61  QIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQ-WLQEIDRYAS-ENVNKL 118
Query: 125 LVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKI 176
           LVGNK D  +++VV        A   G  FLE SAK   NVEQ F  +A +I
Sbjct: 119 LVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEI 170

>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp Length = 191

Iteration: 1
 Score =  154 bits (390), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 86/170 (50%), Positives = 108/170 (63%), Gaps = 3/170 (1%)
Query: 8   SNSYDLSFKILLIGDSGVGKX-XXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTI 66
           S  YD  FK+LLIGDSGVGK                  TIGVDFKI+ + + GK +KL I
Sbjct: 19  SPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQI 78
Query: 67  WDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLV 126
           WDTAGQERFRT+TSSYYRGA GII+VYDVT +E+F N+   W +E+D Y++ ++  K+LV
Sbjct: 79  WDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLQEIDRYAS-ENVNKLLV 136
Query: 127 GNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKI 176
           GNK D  +++VV        A   G  FLE SAK   NVEQ F  +A +I
Sbjct: 137 GNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 186

>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4 Length = 183

Iteration: 1
 Score =  154 bits (389), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 81/170 (47%), Positives = 112/170 (65%), Gaps = 3/170 (1%)
Query: 8   SNSYDLSFKILLIGDSGVGKX-XXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTI 66
           + +YD  FK+LLIGDSGVGK                  TIG+DFKI+ + + GKR+KL I
Sbjct: 2   AKTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQI 61
Query: 67  WDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLV 126
           WDTAGQERFRT+T++YYRGA GI+LVYD+T  ++F N+ + W + ++ +++  D  KM++
Sbjct: 62  WDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRN-WIRNIEEHAS-ADVEKMIL 119
Query: 127 GNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKI 176
           GNK D + +R VS+E G  LA ++G  F+E SAK   NVE  F  LA  I
Sbjct: 120 GNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDI 169

>pdb|4FMC|B Chain B, Espg-Rab1 Complex Length = 171

Iteration: 1
 Score =  154 bits (389), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 85/167 (50%), Positives = 107/167 (64%), Gaps = 3/167 (1%)
Query: 11  YDLSFKILLIGDSGVGKX-XXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDT 69
           YD  FK+LLIGDSGVGK                  TIGVDFKI+ + + GK +KL IWDT
Sbjct: 3   YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDT 62
Query: 70  AGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNK 129
           AGQERFRT+TSSYYRGA GII+VYDVT +E+F N+   W +E+D Y++ ++  K+LVGNK
Sbjct: 63  AGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLQEIDRYAS-ENVNKLLVGNK 120
Query: 130 VDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKI 176
            D  +++VV        A   G  FLE SAK   NVEQ F  +A +I
Sbjct: 121 CDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 167

>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase Length = 179

Iteration: 1
 Score =  154 bits (389), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 83/179 (46%), Positives = 114/179 (63%), Gaps = 4/179 (2%)
Query: 1   MGSSSGQSNSYDLSFKILLIGDSGVGKXXXXXXXXXXXXXXXXP-TIGVDFKIKLLTVAG 59
           +GS++   N Y   FK ++IGD GVGK                P TIGV+F  +++ V+G
Sbjct: 3   LGSATAPYN-YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSG 61
Query: 60  KRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQ 119
           +++KL IWDTAGQERFR +T SYYRGA G ++VYD+TRR T+ +LS       +L  TN 
Sbjct: 62  QKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNL--TNP 119
Query: 120 DCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIME 178
           + V +L+GNK D +++R V+ EE    A+E+G LFLE SAKT ENVE  F + A KI +
Sbjct: 120 NTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQ 178

>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure Length = 171

Iteration: 1
 Score =  154 bits (388), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 85/167 (50%), Positives = 107/167 (64%), Gaps = 3/167 (1%)
Query: 11  YDLSFKILLIGDSGVGKX-XXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDT 69
           YD  FK+LLIGDSGVGK                  TIGVDFKI+ + + GK +KL IWDT
Sbjct: 3   YDALFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDT 62
Query: 70  AGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNK 129
           AGQERFRT+TSSYYRGA GII+VYDVT +E+F N+   W +E+D Y++ ++  K+LVGNK
Sbjct: 63  AGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLQEIDRYAS-ENVNKLLVGNK 120
Query: 130 VDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKI 176
            D  +++VV        A   G  FLE SAK   NVEQ F  +A +I
Sbjct: 121 CDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 167

>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1 Length = 199

Iteration: 1
 Score =  153 bits (387), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 86/173 (49%), Positives = 108/173 (62%), Gaps = 3/173 (1%)
Query: 5   SGQSNSYDLSFKILLIGDSGVGKX-XXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLK 63
           S  +  YD  FK+LLIGDSGVGK                  TIGVDFKI+ + + GK +K
Sbjct: 24  SSXNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIK 83
Query: 64  LTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVK 123
           L IWDTAGQERFRT+TSSYYRGA GII+VYDVT +E+F N+   W +E+D Y++ ++  K
Sbjct: 84  LQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLQEIDRYAS-ENVNK 141
Query: 124 MLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKI 176
           +LVGNK D  +++VV        A   G  FLE SAK   NVEQ F   A +I
Sbjct: 142 LLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFXTXAAEI 194

>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)- Imidotriphosphate Length = 170

Iteration: 1
 Score =  150 bits (380), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 87/168 (51%), Positives = 110/168 (65%), Gaps = 4/168 (2%)
Query: 12  DLSFKILLIGDSGVGKX-XXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTA 70
           D   KILLIGDSGVGK                  TIG+DFKIK + + GK++KL IWDTA
Sbjct: 1   DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTA 60
Query: 71  GQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKV 130
           GQERFRT+T++YYRGA GIILVYD+T   TFTN+   W K V+ ++ N +   +LVGNK 
Sbjct: 61  GQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQ-WFKTVNEHA-NDEAQLLLVGNKS 118
Query: 131 DRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIME 178
           D ++ RVV+ ++G ALAKE G  F+E SAK  +NV + F  LA  I E
Sbjct: 119 DMET-RVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQE 165

>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1 (Gtpase Domain) Complex Length = 175

Iteration: 1
 Score =  150 bits (380), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 84/167 (50%), Positives = 106/167 (63%), Gaps = 3/167 (1%)
Query: 11  YDLSFKILLIGDSGVGKX-XXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDT 69
           YD  FK+LLIGDSGVGK                  TIGVDFKI+ + + GK +KL IWDT
Sbjct: 5   YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDT 64
Query: 70  AGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNK 129
           AGQERFRT+TSSYYRGA GII+VYDVT +E+F N+   W +E+D Y++ ++  K+LVG K
Sbjct: 65  AGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLQEIDRYAS-ENVNKLLVGIK 122
Query: 130 VDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKI 176
            D  +++VV        A   G  FLE SAK   NVEQ F  +A +I
Sbjct: 123 CDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 169

>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp Length = 170

Iteration: 1
 Score =  150 bits (379), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 86/164 (52%), Positives = 109/164 (66%), Gaps = 4/164 (2%)
Query: 16  KILLIGDSGVGKX-XXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER 74
           KILLIGDSGVGK                  TIG+DFKIK + + GK++KL IWDTAGQER
Sbjct: 5   KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQER 64
Query: 75  FRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDS 134
           FRT+T++YYRGA GIILVYD+T   TFTN+   W K V+ ++ N +   +LVGNK D ++
Sbjct: 65  FRTITTAYYRGAXGIILVYDITDERTFTNIKQ-WFKTVNEHA-NDEAQLLLVGNKSDXET 122
Query: 135 ERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIME 178
            RVV+ ++G ALAKE G  F+E SAK  +NV + F  LA  I E
Sbjct: 123 -RVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQE 165

>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With Prenylated Ypt1 Gtpase Length = 206

Iteration: 1
 Score =  150 bits (379), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 91/204 (44%), Positives = 119/204 (58%), Gaps = 6/204 (2%)
Query: 11  YDLSFKILLIGDSGVGKX-XXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDT 69
           YD  FK+LLIG+SGVGK                  TIGVDFKIK + + GK +KL IWDT
Sbjct: 5   YDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDT 64
Query: 70  AGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNK 129
           AGQERFRT+TSSYYRG+ GII+VYDVT +E+F  +  +W +E+D Y+T+   +K+LVGNK
Sbjct: 65  AGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVK-MWLQEIDRYATST-VLKLLVGNK 122
Query: 130 VDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIMEVPS---LLEEG 186
            D   +RVV  +     A  +   FLE SA    NVE  F  +A +I E  S   L E  
Sbjct: 123 CDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLNETT 182
Query: 187 SNVVKRNILKQKPENQSPPIGGCC 210
                +  +  K ++ +   GGCC
Sbjct: 183 QKKEDKGNVNLKGQSLTNTGGGCC 206

>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With Rab8a:gppnhp Length = 174

Iteration: 1
 Score =  150 bits (379), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 80/166 (48%), Positives = 109/166 (65%), Gaps = 3/166 (1%)
Query: 12  DLSFKILLIGDSGVGKX-XXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTA 70
           D  FK+LLIGDSGVGK                  TIG+DFKI+ + + GKR+KL IWDTA
Sbjct: 4   DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTA 63
Query: 71  GQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKV 130
           GQERFRT+T++YYRGA GI+LVYD+T  ++F N+ + W + ++ +++  D  KM++GNK 
Sbjct: 64  GQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRN-WIRNIEEHAS-ADVEKMILGNKC 121
Query: 131 DRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKI 176
           D + +R VS+E G  LA ++G  F+E SAK   NVE  F  LA  I
Sbjct: 122 DVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDI 167

>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14 Length = 196

Iteration: 1
 Score =  150 bits (379), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 81/178 (45%), Positives = 111/178 (62%), Gaps = 3/178 (1%)
Query: 2   GSSSGQSNSYDLSFKILLIGDSGVGKXXXXXXXXXXXXXXXXP-TIGVDFKIKLLTVAGK 60
           GS +    +Y   FK ++IGD GVGK                P TIGV+F  +++ V+G+
Sbjct: 18  GSMATAPYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQ 77
Query: 61  RLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQD 120
           ++KL IWDTAGQ RFR +T SYYRGA G ++VYD+TRR T+ +LS       +L  TN +
Sbjct: 78  KIKLQIWDTAGQGRFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNL--TNPN 135
Query: 121 CVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIME 178
            V +L+GNK D +++R V+ EE    A+E+G LFLE SAKT ENVE  F + A KI +
Sbjct: 136 TVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQ 193

>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef Domain, And Phosphate Complex Length = 174

Iteration: 1
 Score =  150 bits (379), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 86/164 (52%), Positives = 109/164 (66%), Gaps = 4/164 (2%)
Query: 16  KILLIGDSGVGKX-XXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER 74
           KILLIGDSGVGK                  TIG+DFKIK + + GK++KL +WDTAGQER
Sbjct: 9   KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQER 68
Query: 75  FRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDS 134
           FRT+T++YYRGA GIILVYDVT   TFTN+   W K V+ ++ N +   +LVGNK D ++
Sbjct: 69  FRTITTAYYRGAMGIILVYDVTDERTFTNIKQ-WFKTVNEHA-NDEAQLLLVGNKSDMET 126
Query: 135 ERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIME 178
            RVV+ ++G ALAKE G  F+E SAK  +NV + F  LA  I E
Sbjct: 127 -RVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQE 169

>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score =  150 bits (378), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 77/165 (46%), Positives = 106/165 (64%), Gaps = 4/165 (2%)
Query: 11  YDLSFKILLIGDSGVGKX--XXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWD 68
           YD++FK++L+GDSGVGK                   T+G+DF+ K+L V G ++KL +WD
Sbjct: 7   YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWD 66
Query: 69  TAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGN 128
           TAGQERFR++T +YYR A  ++L+YDVT + +F N+   W  E+  Y+   D   ML+GN
Sbjct: 67  TAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQ-AWLTEIHEYA-QHDVALMLLGN 124
Query: 129 KVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLA 173
           KVD   ERVV RE+G  LAKE+G  F+E SAKT  NV+  F  +A
Sbjct: 125 KVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIA 169

>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b Length = 191

Iteration: 1
 Score =  150 bits (378), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 80/163 (49%), Positives = 109/163 (66%), Gaps = 3/163 (1%)
Query: 15  FKILLIGDSGVGKXXXXXXXXXXXXXXXXP-TIGVDFKIKLLTVAGKRLKLTIWDTAGQE 73
           FK ++IGD+GVGK                  TIGV+F  +++ + GK++KL IWDTAGQE
Sbjct: 22  FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQE 81
Query: 74  RFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRD 133
            FR++T SYYRGA G +LVYD+TRRETF +L+  W ++   +S++ + V ML+GNK D +
Sbjct: 82  SFRSITRSYYRGAAGALLVYDITRRETFNHLTS-WLEDARQHSSS-NMVIMLIGNKSDLE 139
Query: 134 SERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKI 176
           S R V REEG A A+EHG +F+E SAKT  NVE+ F   A +I
Sbjct: 140 SRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEI 182

>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab Gtpase Sec4p Length = 170

Iteration: 1
 Score =  149 bits (377), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 86/164 (52%), Positives = 109/164 (66%), Gaps = 4/164 (2%)
Query: 16  KILLIGDSGVGKX-XXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER 74
           KILLIGDSGVGK                  TIG+DFKIK + + GK++KL +WDTAGQER
Sbjct: 5   KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQER 64
Query: 75  FRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDS 134
           FRT+T++YYRGA GIILVYDVT   TFTN+   W K V+ ++ N +   +LVGNK D ++
Sbjct: 65  FRTITTAYYRGAXGIILVYDVTDERTFTNIKQ-WFKTVNEHA-NDEAQLLLVGNKSDXET 122
Query: 135 ERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIME 178
            RVV+ ++G ALAKE G  F+E SAK  +NV + F  LA  I E
Sbjct: 123 -RVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQE 165

>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex Length = 206

Iteration: 1
 Score =  148 bits (374), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 92/207 (44%), Positives = 117/207 (56%), Gaps = 13/207 (6%)
Query: 11  YDLSFKILLIGDSGVGKX-XXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDT 69
           YD  FK+LLIG+SGVGK                  TIGVDFKIK + + GK +KL IWDT
Sbjct: 5   YDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDT 64
Query: 70  AGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNK 129
           AGQERFRT+TSSYYRG+ GII+VYDVT +E+F  +  +W +E+D Y+T+   +K+LVGNK
Sbjct: 65  AGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVK-MWLQEIDRYATST-VLKLLVGNK 122
Query: 130 VDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIMEVPSLLEEGSNV 189
            D   +RVV  +     A  +   FLE SA    NVE  F  +A +I E  S        
Sbjct: 123 CDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLNETT 182
Query: 190 VKR------NILKQKPENQSPPIGGCC 210
            K+      N+  Q   N     GGCC
Sbjct: 183 QKKEDKGNVNLKGQSLTN----TGGCC 205

>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A Length = 164

Iteration: 1
 Score =  147 bits (372), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 82/162 (50%), Positives = 104/162 (64%), Gaps = 3/162 (1%)
Query: 16  KILLIGDSGVGKX-XXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER 74
           K+LLIGDSGVGK                  TIGVDFKI+ + + GK +KL IWDTAGQER
Sbjct: 1   KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 60
Query: 75  FRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDS 134
           FRT+TSSYYRGA GII+VYDVT +E+F N+   W +E+D Y++ ++  K+LVGNK D  +
Sbjct: 61  FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLQEIDRYAS-ENVNKLLVGNKCDLTT 118
Query: 135 ERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKI 176
           ++VV        A   G  FLE SAK   NVEQ F  +A +I
Sbjct: 119 KKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 160

>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase Length = 185

Iteration: 1
 Score =  147 bits (372), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 85/178 (47%), Positives = 110/178 (61%), Gaps = 3/178 (1%)
Query: 2   GSSSGQSNSYDLSFKILLIGDSGVGKX-XXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGK 60
           GS   + + YD  FK+LLIG+SGVGK                  TIGVDFKIK + + GK
Sbjct: 9   GSLVPRGSEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGK 68
Query: 61  RLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQD 120
            +KL IWDTAGQERFRT+TSSYYRG+ GII+VYDVT +E+F  +  +W +E+D Y+T+  
Sbjct: 69  TVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVK-MWLQEIDRYATST- 126
Query: 121 CVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIME 178
            +K+LVGNK D   +RVV  +     A  +   FLE SA    NVE  F  +A +I E
Sbjct: 127 VLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKE 184

>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169

Iteration: 1
 Score =  145 bits (367), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 80/170 (47%), Positives = 105/170 (61%), Gaps = 3/170 (1%)
Query: 10  SYDLSFKILLIGDSGVGKXXXXXXXXXXXXX-XXXPTIGVDFKIKLLTVAGKRLKLTIWD 68
           ++D  FKIL+IG+S VGK                  T+G+DFK+K +    KR+KL IWD
Sbjct: 1   NFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWD 60
Query: 69  TAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGN 128
           TAGQER+RT+T++YYRGA G IL+YD+T  E+F  + D W+ ++  YS +   V +LVGN
Sbjct: 61  TAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQD-WSTQIKTYSWDNAQV-LLVGN 118
Query: 129 KVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIME 178
           K D + ERVVS E G  LA   G  F E SAK   NV+Q FE+L   I E
Sbjct: 119 KCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICE 168

>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal Structure Of The Small G Protein Rab3a Complexed With The Effector Domain Of Rabphilin-3a Length = 203

Iteration: 1
 Score =  145 bits (366), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 89/203 (43%), Positives = 116/203 (57%), Gaps = 9/203 (4%)
Query: 8   SNSYDLSFKILLIGDSGVGKXXXXXXXXXXXXX-XXXPTIGVDFKIKLLTVAGKRLKLTI 66
           S+ +D  FKIL+IG+S VGK                  T+G+DFK+K +    KR+KL I
Sbjct: 2   SHXFDYXFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQI 61
Query: 67  WDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLV 126
           WDTAG ER+RT+T++YYRGA G IL YD+T  E+F  + D W+ ++  YS +   V +LV
Sbjct: 62  WDTAGLERYRTITTAYYRGAXGFILXYDITNEESFNAVQD-WSTQIKTYSWDNAQV-LLV 119
Query: 127 GNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIMEVPS-LLEE 185
           GNK D + ERVVS E G  LA   G  F E SAK   NV+Q FE+L   I E  S  L+ 
Sbjct: 120 GNKCDXEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKXSESLDT 179
Query: 186 GSNVVKRNILKQKPE---NQSPP 205
               V     KQ P+    Q+PP
Sbjct: 180 ADPAVTG--AKQGPQLTDQQAPP 200

>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp Length = 191

Iteration: 1
 Score =  144 bits (362), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 81/175 (46%), Positives = 108/175 (61%), Gaps = 8/175 (4%)
Query: 4   SSGQSNSY-----DLSFKILLIGDSGVGKXXXXXXXXXXXXX-XXXPTIGVDFKIKLLTV 57
           SSG+ N Y     D  FK+L+IG+S VGK                  T+G+DFK+K +  
Sbjct: 8   SSGRENLYFQGNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYR 67
Query: 58  AGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYST 117
             KR+KL IWDTAGQER+RT+T++YYRGA G IL+YD+T  E+F  + D WA ++  YS 
Sbjct: 68  HEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQD-WATQIKTYSW 126
Query: 118 NQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQL 172
           +   V +LVGNK D + ERVV  E+G  LA++ G  F E SAK   +V Q FE+L
Sbjct: 127 DNAQV-ILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERL 180

>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a Length = 186

Iteration: 1
 Score =  142 bits (357), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 79/171 (46%), Positives = 108/171 (63%), Gaps = 3/171 (1%)
Query: 8   SNSYDLSFKILLIGDSGVGKX-XXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTI 66
           S +YD  FK L+IG++G GK                  TIGV+F  K++ V GK +KL I
Sbjct: 4   SETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQI 63
Query: 67  WDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLV 126
           WDTAGQERFR++T SYYRGA G +LVYD+T RET+  L++ W  +  + ++ Q+ V +L 
Sbjct: 64  WDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTN-WLTDARMLAS-QNIVIILC 121
Query: 127 GNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIM 177
           GNK D D++R V+  E    A+E+  +FLE SA T ENVE+ F Q A KI+
Sbjct: 122 GNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKIL 172

>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp Length = 189

Iteration: 1
 Score =  141 bits (356), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 78/168 (46%), Positives = 104/168 (61%), Gaps = 3/168 (1%)
Query: 12  DLSFKILLIGDSGVGKXXXXXXXXXXXXX-XXXPTIGVDFKIKLLTVAGKRLKLTIWDTA 70
           D  FK+LLIG+S VGK                  T+G+DFK+K +    KR+KL IWDTA
Sbjct: 20  DYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTA 79
Query: 71  GQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKV 130
           GQER+RT+T++YYRGA G +L+YD+  +E+F  + D WA ++  YS +   V +LVGNK 
Sbjct: 80  GQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQD-WATQIKTYSWDNAQV-ILVGNKC 137
Query: 131 DRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIME 178
           D + ERVV  E+G  LA + G  F E SAK   NV+Q FE+L   I E
Sbjct: 138 DLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVICE 185

>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a Length = 175

Iteration: 1
 Score =  139 bits (351), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 78/171 (45%), Positives = 108/171 (63%), Gaps = 3/171 (1%)
Query: 8   SNSYDLSFKILLIGDSGVGKX-XXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTI 66
           S +YD  FK L+IG++G GK                  TIGV+F  K++ V GK +KL I
Sbjct: 5   SETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQI 64
Query: 67  WDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLV 126
           WDTAGQERFR++T SYYRGA G +LVYD+T RET+  L++ W  +  + ++ Q+ V +L 
Sbjct: 65  WDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTN-WLTDARMLAS-QNIVIILC 122
Query: 127 GNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIM 177
           GNK D D++R V+  E    A+E+  +FLE SA T E+VE+ F Q A KI+
Sbjct: 123 GNKKDLDADREVTFLEASRFAQENELMFLETSALTGEDVEEAFVQCARKIL 173

>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35 Length = 181

Iteration: 1
 Score =  137 bits (345), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 78/175 (44%), Positives = 103/175 (58%), Gaps = 13/175 (7%)
Query: 8   SNSYDLSFKILLIGDSGVGKXXXXXXXXXXXXX-XXXPTIGVDFKIKLLTVAGKRLKLTI 66
           +  YD  FK+L+IGDSGVGK                  TIGVDFKI+ + + G+++KL I
Sbjct: 3   ARDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQI 62
Query: 67  WDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDC---VK 123
           WDTAGQERFRT+TS+YYRG  G+I+VYDVT  E+F N+   W  E+     NQ+C    +
Sbjct: 63  WDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKR-WLHEI-----NQNCDDVCR 116
Query: 124 MLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQ---CFEQLALK 175
           +LVGNK D    +VV  E+    A + G    E SAK   NVE+   C  +L L+
Sbjct: 117 ILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLR 171

>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The Central Rab Binding Domain Of Rabenosyn-5 Length = 172

Iteration: 1
 Score =  136 bits (343), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 77/171 (45%), Positives = 107/171 (62%), Gaps = 3/171 (1%)
Query: 8   SNSYDLSFKILLIGDSGVGKX-XXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTI 66
           S +YD  FK L+IG++G GK                  TIGV+F  K++ V GK +KL I
Sbjct: 2   SETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQI 61
Query: 67  WDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLV 126
           WDTAG ERFR++T SYYRGA G +LVYD+T RET+  L++ W  +  + ++ Q+ V +L 
Sbjct: 62  WDTAGLERFRSVTRSYYRGAAGALLVYDITSRETYNALTN-WLTDARMLAS-QNIVIILC 119
Query: 127 GNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIM 177
           GNK D D++R V+  E    A+E+  +FLE SA T E+VE+ F Q A KI+
Sbjct: 120 GNKKDLDADREVTFLEASRFAQENELMFLETSALTGEDVEEAFVQCARKIL 170

>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue Length = 201

Iteration: 1
 Score =  136 bits (343), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 73/173 (42%), Positives = 106/173 (61%), Gaps = 3/173 (1%)
Query: 6   GQSNSYDLSFKILLIGDSGVGKX-XXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKL 64
           G    YD  FKI+LIG++GVGK                  TIGVDF IK + + G+++KL
Sbjct: 18  GSMEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKL 77
Query: 65  TIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKM 124
            IWDTAGQERFR++T SYYR A  +IL YD+T  E+F  L + W +E++ Y++N+  + +
Sbjct: 78  QIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPE-WLREIEQYASNK-VITV 135
Query: 125 LVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIM 177
           LVGNK+D    R VS++     ++     +LE SAK  +NVE+ F  LA +++
Sbjct: 136 LVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLI 188

>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex With Gdp Length = 192

Iteration: 1
 Score =  135 bits (340), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 73/175 (41%), Positives = 111/175 (63%), Gaps = 4/175 (2%)
Query: 6   GQSNSYDLSFKILLIGDSGVGKXXXXXXXXXXXXXXX-XPTIGVDFKIKLLTVAGKRLKL 64
           G     D   ++++IG  GVGK                  T+GVDFKIK + + GK+++L
Sbjct: 18  GSPRPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRL 77
Query: 65  TIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKM 124
            IWDTAGQERF ++TS+YYR A+GIILVYD+T++ETF +L   W K +D Y++ +D   +
Sbjct: 78  QIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPK-WMKMIDKYAS-EDAELL 135
Query: 125 LVGNKVDRDSERVVSREEGIALAKE-HGSLFLECSAKTRENVEQCFEQLALKIME 178
           LVGNK+D +++R ++R++G   A++  G  F E SAK   NV++ F +L   I++
Sbjct: 136 LVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILK 190

>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp Length = 201

Iteration: 1
 Score =  132 bits (331), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 74/169 (43%), Positives = 104/169 (61%), Gaps = 4/169 (2%)
Query: 11  YDLSFKILLIGDSGVGKX-XXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDT 69
           YD  FK++L+GD+ VGK                  TIGVDF +K L + GKR+KL IWDT
Sbjct: 26  YDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDT 85
Query: 70  AGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNK 129
           AGQERFRT+T SYYR A G IL YD+T+R +F ++   W ++V  Y+   + V++L+GNK
Sbjct: 86  AGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPH-WIEDVRKYA-GSNIVQLLIGNK 143
Query: 130 VDRDSERVVSREEGIALAKEHGSL-FLECSAKTRENVEQCFEQLALKIM 177
            D    R VS  E  +LA+ +  L  +E SAK   NVE+ F ++A +++
Sbjct: 144 SDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELI 192

>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi Length = 223

Iteration: 1
 Score =  131 bits (329), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 75/170 (44%), Positives = 99/170 (58%), Gaps = 5/170 (2%)
Query: 11  YDLSFKILLIGDSGVGKXXXXXXXXXXX-XXXXXPTIGVDFKIKLLTVAGKRLKLTIWDT 69
           YDL FKI+LIGDSGVGK                  TIGV+F  + L + GKR+K  IWDT
Sbjct: 10  YDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDT 69
Query: 70  AGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKM-LVGN 128
           AGQER+R +TS+YYRGA G ++VYD+++  ++ N +  W  E  L     D V + L+GN
Sbjct: 70  AGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNH-WLSE--LRENADDNVAVGLIGN 126
Query: 129 KVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIME 178
           K D    R V  EE    A+E+  LF E SA   ENV++ FE+L   I +
Sbjct: 127 KSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTIYQ 176

>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase Length = 184

Iteration: 1
 Score =  130 bits (326), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 73/171 (42%), Positives = 102/171 (59%), Gaps = 3/171 (1%)
Query: 10  SYDLSFKILLIGDSGVGKXXXXXXXXXXX-XXXXXPTIGVDFKIKLLTVAGKRLKLTIWD 68
           SYD  FK++LIGDSGVGK                  TIGV+F  + + V GK +K  IWD
Sbjct: 16  SYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWD 75
Query: 69  TAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGN 128
           TAGQER+R +TS+YYRGA G +LVYD+ +  T+ N+ + W KE+  ++ + + V MLVGN
Sbjct: 76  TAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHA-DSNIVIMLVGN 133
Query: 129 KVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIMEV 179
           K D    R V  +E  A A+++G  F+E SA    NVE  F+ +  +I  +
Sbjct: 134 KSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRI 184

>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex With Gdp Length = 191

Iteration: 1
 Score =  128 bits (322), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 72/171 (42%), Positives = 102/171 (59%), Gaps = 3/171 (1%)
Query: 7   QSNSYDLSFKILLIGDSGVGKXXXXXXXXXXX-XXXXXPTIGVDFKIKLLTVAGKRLKLT 65
           + + YD  FK++LIGDSGVGK                  TIGV+F  + + V GK +K  
Sbjct: 22  RDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQ 81
Query: 66  IWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKML 125
           IWDTAGQER+R +TS+YYRGA G +LVYD+ +  T+ N+ + W KE+  ++ + + V ML
Sbjct: 82  IWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHA-DSNIVIML 139
Query: 126 VGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKI 176
           VGNK D    R V  +E  A A+++G  F+E SA    NVE  F+ +  +I
Sbjct: 140 VGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 190

>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp Length = 200

Iteration: 1
 Score =  128 bits (321), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 76/167 (45%), Positives = 98/167 (58%), Gaps = 3/167 (1%)
Query: 12  DLSFKILLIGDSGVGKX-XXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTA 70
           D  FK L+IG +G GK                  TIGV+F  +++ V GK +KL IWDTA
Sbjct: 23  DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTA 82
Query: 71  GQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKV 130
           GQERFR++T SYYRGA G +LVYD+T RET+ +L+        L S N   V +L GNK 
Sbjct: 83  GQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPN--IVVILCGNKK 140
Query: 131 DRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIM 177
           D D ER V+  E    A+E+  +FLE SA T ENVE+ F + A  I+
Sbjct: 141 DLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTIL 187

>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase Length = 199

Iteration: 1
 Score =  128 bits (321), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 75/195 (38%), Positives = 110/195 (56%), Gaps = 12/195 (6%)
Query: 11  YDLSFKILLIGDSGVGKXXXXXXXXXXX-XXXXXPTIGVDFKIKLLTVAGKRLKLTIWDT 69
           YD  FK++LIGDSGVGK                  TIGV+F  + + V GK +K  IWDT
Sbjct: 2   YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 61
Query: 70  AGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNK 129
           AGQER+R +TS+YYRGA G +LVYD+ +  T+ N+ + W KE+  ++ + + V MLVGNK
Sbjct: 62  AGQERYRRITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHA-DSNIVIMLVGNK 119
Query: 130 VDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIMEVPSLLEEGSNV 189
            D    R V  +E  A A+++   F+E SA    NVE+ F+ +  +I  +         V
Sbjct: 120 SDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRI---------V 170
Query: 190 VKRNILKQKPENQSP 204
            ++ I  +   ++SP
Sbjct: 171 SQKQIADRAAHDESP 185

>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3 Length = 172

Iteration: 1
 Score =  127 bits (318), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 72/173 (41%), Positives = 102/173 (58%), Gaps = 3/173 (1%)
Query: 8   SNSYDLSFKILLIGDSGVGKXXXXXXXXXXX-XXXXXPTIGVDFKIKLLTVAGKRLKLTI 66
           S+ YD  FK++LIGDSGVGK                  TIGV+F  + + V GK +K  I
Sbjct: 2   SDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQI 61
Query: 67  WDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLV 126
           WDTAG ER+R +TS+YYRGA G +LVYD+ +  T+ N+ + W KE+  ++ + + V MLV
Sbjct: 62  WDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHA-DSNIVIMLV 119
Query: 127 GNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIMEV 179
           GNK D    R V  +E  A A+++G  F+E SA    NVE  F+ +  +I  +
Sbjct: 120 GNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRI 172

>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex With Gtpgammas Length = 191

Iteration: 1
 Score =  125 bits (314), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 71/171 (41%), Positives = 101/171 (59%), Gaps = 3/171 (1%)
Query: 7   QSNSYDLSFKILLIGDSGVGKXXXXXXXXXXX-XXXXXPTIGVDFKIKLLTVAGKRLKLT 65
           + + YD  FK++LIGDSGVGK                  TIGV+F  + + V GK +K  
Sbjct: 22  RDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQ 81
Query: 66  IWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKML 125
           IWDTAG ER+R +TS+YYRGA G +LVYD+ +  T+ N+ + W KE+  ++ + + V ML
Sbjct: 82  IWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHA-DSNIVIML 139
Query: 126 VGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKI 176
           VGNK D    R V  +E  A A+++G  F+E SA    NVE  F+ +  +I
Sbjct: 140 VGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 190

>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In Complex With Gdp Length = 181

Iteration: 1
 Score =  122 bits (306), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 72/171 (42%), Positives = 99/171 (57%), Gaps = 4/171 (2%)
Query: 11  YDLSFKILLIGDSGVGKXXXXXXXXXXX-XXXXXPTIGVDFKIKLLTVAGKRL-KLTIWD 68
           YD  FKI+LIGDSGVGK                  TIGV+F  K + +   ++ K  IWD
Sbjct: 4   YDYLFKIVLIGDSGVGKSNLLSRFTRDEFNLESKSTIGVEFATKSIQLKNNKIIKAQIWD 63
Query: 69  TAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGN 128
           TAGQER+R +TS+YYRGA G +LVYD+T++ +F N+ + W KE+   + + + V +LVGN
Sbjct: 64  TAGQERYRAITSAYYRGAVGALLVYDITKKNSFENI-EKWLKELRD-NADSNIVILLVGN 121
Query: 129 KVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIMEV 179
           K D    RV++  +    AK+    F+E SA    NVE  F QL  +I  V
Sbjct: 122 KSDLKHLRVINDNDATQYAKKEKLAFIETSALEATNVELAFHQLLNEIYNV 172

>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2 Length = 173

Iteration: 1
 Score =  122 bits (305), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 70/171 (40%), Positives = 100/171 (58%), Gaps = 3/171 (1%)
Query: 7   QSNSYDLSFKILLIGDSGVGKXXXXXXXXXXXXX-XXXPTIGVDFKIKLLTVAGKRLKLT 65
           + + YD  FK++LIGDSGVGK                  TIGV+F  + + V GK +K  
Sbjct: 4   RDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQ 63
Query: 66  IWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKML 125
           IWDTAG ER+R +TS+YYRGA G +LVYD+ +  T+ N+ + W KE+  ++ + + V  L
Sbjct: 64  IWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHA-DSNIVIXL 121
Query: 126 VGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKI 176
           VGNK D    R V  +E  A A+++G  F+E SA    NVE  F+ +  +I
Sbjct: 122 VGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 172

>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab- Binding Domain Length = 167

Iteration: 1
 Score =  121 bits (304), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 70/167 (41%), Positives = 98/167 (58%), Gaps = 3/167 (1%)
Query: 11  YDLSFKILLIGDSGVGKXXXXXXXXXXXXX-XXXPTIGVDFKIKLLTVAGKRLKLTIWDT 69
           YD  FK++LIGDSGVGK                  TIGV+F  + + V GK +K  IWDT
Sbjct: 2   YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 61
Query: 70  AGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNK 129
           AG ER+R +TS+YYRGA G +LVYD+ +  T+ N+ + W KE+  ++ + + V  LVGNK
Sbjct: 62  AGLERYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHA-DSNIVIXLVGNK 119
Query: 130 VDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKI 176
            D    R V  +E  A A+++G  F+E SA    NVE  F+ +  +I
Sbjct: 120 SDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 166

>pdb|4FMC|F Chain F, Espg-Rab1 Complex Length = 117

Iteration: 1
 Score =  120 bits (300), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 64/116 (55%), Positives = 81/116 (69%), Gaps = 3/116 (2%)
Query: 17  ILLIGDSGVGKX-XXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERF 75
           +LLIGDSGVGK                  TIGVDFKI+ + + GK +KL IWDTAGQERF
Sbjct: 1   LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF 60
Query: 76  RTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVD 131
           RT+TSSYYRGA GII+VYDVT +E+F N+   W +E+D Y++ ++  K+LVGNK D
Sbjct: 61  RTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLQEIDRYAS-ENVNKLLVGNKCD 114

>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp Length = 185

Iteration: 1
 Score =  118 bits (296), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 69/173 (39%), Positives = 97/173 (56%), Gaps = 5/173 (2%)
Query: 11  YDLSFKILLIGDSGVGKXXXXX-XXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDT 69
           YD  FKI+LIGDSGVGK                  TIGV+F  + + V  K++K  IWDT
Sbjct: 7   YDYLFKIVLIGDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKIKAQIWDT 66
Query: 70  AGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKM-LVGN 128
           AG ER+R +TS+YYRGA G ++VYD+++  ++ N +  W  E  L     D V + L+GN
Sbjct: 67  AGLERYRAITSAYYRGAVGALIVYDISKSSSYENCNH-WLTE--LRENADDNVAVGLIGN 123
Query: 129 KVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIMEVPS 181
           K D    R V  +E    A E+  LF E SA   +NV++ F +L + I ++ S
Sbjct: 124 KSDLAHLRAVPTDEAKNFAMENQMLFTETSALNSDNVDKAFRELIVAIFQMVS 176

>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp Length = 193

Iteration: 1
 Score =  118 bits (295), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 71/172 (41%), Positives = 95/172 (55%), Gaps = 5/172 (2%)
Query: 8   SNSYDLSFKILLIGDSGVGKXXXXXXXXXXXXXX-XXPTIGVDFKIKLLTVAGKRLKLTI 66
           S  Y+  FK++LIG+SGVGK                  TIGV+F  + + +    +K  I
Sbjct: 19  SEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQI 78
Query: 67  WDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLY-STNQDCVKML 125
           WDTAG ER+R +TS+YYRGA G +LV+D+T+ +T+  + + W KE  LY       V ML
Sbjct: 79  WDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYA-VVERWLKE--LYDHAEATIVVML 135
Query: 126 VGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIM 177
           VGNK D    R V  EE    A+ +G LFLE SA    NVE  FE +  +I 
Sbjct: 136 VGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIF 187

>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 170

Iteration: 1
 Score =  118 bits (295), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 70/167 (41%), Positives = 93/167 (55%), Gaps = 6/167 (3%)
Query: 14  SFKILLIGDSGVGKXXXXXXXXXX-XXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQ 72
           S K++L+G++ VGK                 PTIG  F  + +T+    +K  IWDTAGQ
Sbjct: 3   SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQ 62
Query: 73  ERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVD- 131
           ERF +L   YYR AQ  ++VYDVT+ ++F      W KE+     ++D +  LVGNK+D 
Sbjct: 63  ERFASLAPXYYRNAQAALVVYDVTKPQSFIKARH-WVKELH-EQASKDIIIALVGNKIDX 120
Query: 132 --RDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKI 176
                ER V+REEG  LA+E G LF E SAKT ENV   F  +  KI
Sbjct: 121 LQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKI 167

>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In Complex With Fip2 Length = 178

Iteration: 1
 Score =  117 bits (293), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 70/169 (41%), Positives = 95/169 (56%), Gaps = 5/169 (2%)
Query: 11  YDLSFKILLIGDSGVGKXXXXXXXXXXXXXX-XXPTIGVDFKIKLLTVAGKRLKLTIWDT 69
           Y+  FK++LIG+SGVGK                  TIGV+F  + + +    +K  IWDT
Sbjct: 7   YNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDT 66
Query: 70  AGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQ-DCVKMLVGN 128
           AG ER+R +TS+YYRGA G +LV+D+T+ +T+  + + W KE  LY   +   V MLVGN
Sbjct: 67  AGLERYRAITSAYYRGAVGALLVFDLTKHQTYA-VVERWLKE--LYDHAEATIVVMLVGN 123
Query: 129 KVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIM 177
           K D    R V  EE    A+ +G LFLE SA    NVE  FE +  +I 
Sbjct: 124 KSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIF 172

>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp Length = 179

Iteration: 1
 Score =  110 bits (274), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 64/163 (39%), Positives = 89/163 (54%), Gaps = 3/163 (1%)
Query: 15  FKILLIGDSGVGKXXXXXXXXX-XXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQE 73
           FK++L+G+S VGK                  TIG  F  + + +    +K  IWDTAGQE
Sbjct: 9   FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQE 68
Query: 74  RFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRD 133
           R+ +L   YYRGAQ  I+VYD+T +ETF   +  W KE+   ++    V  L GNK D  
Sbjct: 69  RYHSLAPMYYRGAQAAIVVYDITNQETFAR-AKTWVKELQRQAS-PSIVIALAGNKADLA 126
Query: 134 SERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKI 176
           ++R+V  EE  A A ++  LF+E SAKT  NV   F  +A K+
Sbjct: 127 NKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKL 169

>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp Length = 199

Iteration: 1
 Score =  109 bits (273), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 68/179 (37%), Positives = 102/179 (56%), Gaps = 9/179 (5%)
Query: 5   SGQSNSYDLSFKILLIGDSGVGKXXXXXXX-XXXXXXXXXPTIGVDFKIKLLTVAGKRLK 63
           S +S S   ++KI+L GD+ VGK                  T+GVDF++K L V G+R  
Sbjct: 19  SAKSFSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTV 78
Query: 64  LTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVK 123
           L +WDTAGQERFR++  SY+R A G++L+YDVT  ++F N+ + W   ++  + ++    
Sbjct: 79  LQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIRE-WVDMIE-DAAHETVPI 136
Query: 124 MLVGNKVD-RDS-----ERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKI 176
           MLVGNK D RD+     ++ V    G  LA  +G+LF E SAK   N+ +    LA ++
Sbjct: 137 MLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAREV 195

>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170

Iteration: 1
 Score =  108 bits (271), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 63/166 (37%), Positives = 92/166 (55%), Gaps = 3/166 (1%)
Query: 14  SFKILLIGDSGVGKXXXXXXX-XXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQ 72
           SFK++L+G+  VGK                  T+G  F  K L + GKR+ L IWDTAGQ
Sbjct: 6   SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQ 65
Query: 73  ERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDR 132
           ERF  L   YYR + G ILVYD+T  ++F  + + W KE+     N+ C+  +VGNK+D 
Sbjct: 66  ERFHALGPIYYRDSNGAILVYDITDEDSFQKVKN-WVKELRKMLGNEICL-CIVGNKIDL 123
Query: 133 DSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIME 178
           + ER VS +E  + A+  G+     SAK  + +E+ F  L  +++E
Sbjct: 124 EKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIE 169

>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c (Mouse) Length = 164

Iteration: 1
 Score =  108 bits (270), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 63/163 (38%), Positives = 89/163 (54%), Gaps = 3/163 (1%)
Query: 15  FKILLIGDSGVGKXXXXXXXXX-XXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQE 73
           FK++L+G+S VGK                  TIG  F  + + +    +K  IWDTAGQE
Sbjct: 4   FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 63
Query: 74  RFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRD 133
           R+ +L   YYRGAQ  I+VYD+T  +TF    + W KE+   ++  + V  L GNK D  
Sbjct: 64  RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKN-WVKELQRQAS-PNIVIALAGNKADLA 121
Query: 134 SERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKI 176
           S+R V  +E  A A ++  LF+E SAKT  NV + F  +A K+
Sbjct: 122 SKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 164

>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp Length = 217

Iteration: 1
 Score =  108 bits (269), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 66/183 (36%), Positives = 102/183 (55%), Gaps = 14/183 (7%)
Query: 8   SNSYDLSFKILLIGDSGVGKXXXXXXXXXXXXXXXX-PTIGVDFKIKLLTV--------A 58
           S  YD   K+L +GDSGVGK                  T+G+DF+ K +          +
Sbjct: 19  SGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSS 78
Query: 59  GKRLK--LTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAK-EVDLY 115
           GK  K  L +WDTAGQERFR+LT++++R A G +L++D+T +++F N+ +  ++ + + Y
Sbjct: 79  GKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAY 138
Query: 116 STNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALK 175
             N D V  L+GNK D   +R V+  +   LA ++G  + E SA T +NVE+  E L   
Sbjct: 139 CENPDIV--LIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDL 196
Query: 176 IME 178
           IM+
Sbjct: 197 IMK 199

>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l) Length = 216

Iteration: 1
 Score =  107 bits (266), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 69/196 (35%), Positives = 102/196 (52%), Gaps = 4/196 (2%)
Query: 15  FKILLIGDSGVGKXXXXXXXXXXX-XXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQE 73
           FK++ +G+  VGK                  TIG+DF  K + +  + ++L +WDTAG E
Sbjct: 14  FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLE 73
Query: 74  RFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRD 133
           RFR+L  SY R +   ++VYD+T   +F   +  W  +V       D + MLVGNK D  
Sbjct: 74  RFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTK-WIDDVRT-ERGSDVIIMLVGNKTDLA 131
Query: 134 SERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIMEVPSLLEEGSNVVKRN 193
            +R VS EEG   AKE   +F+E SAK   NV+Q F ++A  +  + S  ++ S     +
Sbjct: 132 DKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMES-TQDRSREDMID 190
Query: 194 ILKQKPENQSPPIGGC 209
           I  +KP+ Q    GGC
Sbjct: 191 IKLEKPQEQPVSEGGC 206

>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a Length = 195

Iteration: 1
 Score =  106 bits (265), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 64/181 (35%), Positives = 96/181 (53%), Gaps = 16/181 (8%)
Query: 11  YDLSFKILLIGDSGVGKXXXXXXXXX-XXXXXXXPTIGVDFKIKLLTVA----------G 59
           YD   K L +GDSGVGK                  T+G+DF+ K +             G
Sbjct: 8   YDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRG 67
Query: 60  KRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDL--YST 117
           +R+ L +WDTAG ERFR+LT++++R A G +L++D+T  ++F N+ + W  ++ +  YS 
Sbjct: 68  QRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRN-WISQLQMHAYSE 126
Query: 118 NQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIM 177
           N D V  L GNK D + +R V  EE   LA+++G  + E SA    N+    E L   IM
Sbjct: 127 NPDIV--LCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEMLLDLIM 184
Query: 178 E 178
           +
Sbjct: 185 K 185

>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a Length = 170

Iteration: 1
 Score =  106 bits (264), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 61/163 (37%), Positives = 89/163 (54%), Gaps = 3/163 (1%)
Query: 15  FKILLIGDSGVGKXXXXXXXXX-XXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQE 73
           FK++L+G+S VGK                  TIG  F  + + +    +K  IWDTAGQE
Sbjct: 7   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 74  RFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRD 133
           R+ +L   YYRGAQ  I+VYD+T  E+F    + W KE+   ++  + V  L GNK D  
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKN-WVKELQRQAS-PNIVIALSGNKADLA 124
Query: 134 SERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKI 176
           ++R V  +E  + A ++  LF+E SAKT  NV + F  +A K+
Sbjct: 125 NKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167

>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5 C-Terminal Domain Length = 171

Iteration: 1
 Score =  106 bits (264), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 61/163 (37%), Positives = 89/163 (54%), Gaps = 3/163 (1%)
Query: 15  FKILLIGDSGVGKXXXXXXXXX-XXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQE 73
           FK++L+G+S VGK                  TIG  F  + + +    +K  IWDTAGQE
Sbjct: 8   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 67
Query: 74  RFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRD 133
           R+ +L   YYRGAQ  I+VYD+T  E+F    + W KE+   ++  + V  L GNK D  
Sbjct: 68  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKN-WVKELQRQAS-PNIVIALSGNKADLA 125
Query: 134 SERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKI 176
           ++R V  +E  + A ++  LF+E SAKT  NV + F  +A K+
Sbjct: 126 NKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 168

>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its Inactive Gdp-Bound Form Length = 171

Iteration: 1
 Score =  106 bits (264), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 62/165 (37%), Positives = 91/165 (55%), Gaps = 3/165 (1%)
Query: 15  FKILLIGDSGVGKXXXXXXXXXXXX-XXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQE 73
           FK++ +G+  VGK                  TIG+DF  K + +  + ++L +WDTAGQE
Sbjct: 3   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 62
Query: 74  RFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRD 133
           RFR+L  SY R +   ++VYD+T   +F   S  W  +V       D + MLVGNK D  
Sbjct: 63  RFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSK-WIDDVRT-ERGSDVIIMLVGNKTDLA 120
Query: 134 SERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIME 178
            +R ++ EEG   AKE   +F+E SAKT  NV+Q F ++A  ++E
Sbjct: 121 DKRQITIEEGEQRAKELSVMFIETSAKTGYNVKQLFRRVASALLE 165

>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Length = 184

Iteration: 1
 Score =  106 bits (264), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 62/166 (37%), Positives = 91/166 (54%), Gaps = 3/166 (1%)
Query: 14  SFKILLIGDSGVGKXXXXXXX-XXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQ 72
           SFK++L+G+  VGK                  T+   F  K L + GKR+ L IWDTAGQ
Sbjct: 20  SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQ 79
Query: 73  ERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDR 132
           ERF  L   YYR + G ILVYD+T  ++F  + + W KE+     N+ C+  +VGNK+D 
Sbjct: 80  ERFHALGPIYYRDSNGAILVYDITDEDSFQKVKN-WVKELRKMLGNEICL-CIVGNKIDL 137
Query: 133 DSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIME 178
           + ER VS +E  + A+  G+     SAK  + +E+ F  L  +++E
Sbjct: 138 EKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIE 183

>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex Length = 171

Iteration: 1
 Score =  106 bits (264), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 61/163 (37%), Positives = 88/163 (53%), Gaps = 3/163 (1%)
Query: 15  FKILLIGDSGVGKXXXXXXXXX-XXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQE 73
           FK++L+G+S VGK                  TIG  F  + + +    +K  IWDTAGQE
Sbjct: 8   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 67
Query: 74  RFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRD 133
           R+ +L   YYRGAQ  I+VYD+T  E+F    + W KE+   ++  + V  L GNK D  
Sbjct: 68  RYHSLAPXYYRGAQAAIVVYDITNEESFARAKN-WVKELQRQAS-PNIVIALSGNKADLA 125
Query: 134 SERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKI 176
           ++R V  +E  + A ++  LF E SAKT  NV + F  +A K+
Sbjct: 126 NKRAVDFQEAQSYADDNSLLFXETSAKTSXNVNEIFXAIAKKL 168

>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166

Iteration: 1
 Score =  105 bits (263), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 62/163 (38%), Positives = 88/163 (53%), Gaps = 3/163 (1%)
Query: 15  FKILLIGDSGVGKXXXXXXXXX-XXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQE 73
           FK++L+G+S VGK                  TI   F  + + +    +K  IWDTAGQE
Sbjct: 6   FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIQAAFLTQTVCLDDTTVKFEIWDTAGQE 65
Query: 74  RFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRD 133
           R+ +L   YYRGAQ  I+VYD+T  +TF    + W KE+   ++  + V  L GNK D  
Sbjct: 66  RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKN-WVKELQRQAS-PNIVIALAGNKADLA 123
Query: 134 SERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKI 176
           S+R V  +E  A A ++  LF+E SAKT  NV + F  +A K+
Sbjct: 124 SKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 166

>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase Length = 167

Iteration: 1
 Score =  105 bits (263), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 62/163 (38%), Positives = 87/163 (53%), Gaps = 3/163 (1%)
Query: 15  FKILLIGDSGVGKXXXXXXXXX-XXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQE 73
           FK++L+G+S VGK                  TIG  F  + + +    +K  IWDTAG E
Sbjct: 6   FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLE 65
Query: 74  RFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRD 133
           R+ +L   YYRGAQ  I+VYD+T  +TF    + W KE+     + + V  L GNK D  
Sbjct: 66  RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKN-WVKELQ-RQASPNIVIALAGNKADLA 123
Query: 134 SERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKI 176
           S+R V  +E  A A ++  LF+E SAKT  NV + F  +A K+
Sbjct: 124 SKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 166

>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Length = 170

Iteration: 1
 Score =  105 bits (263), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 62/166 (37%), Positives = 91/166 (54%), Gaps = 3/166 (1%)
Query: 14  SFKILLIGDSGVGKXXXXXXX-XXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQ 72
           SFK++L+G+  VGK                  T+   F  K L + GKR+ L IWDTAGQ
Sbjct: 6   SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQ 65
Query: 73  ERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDR 132
           ERF  L   YYR + G ILVYD+T  ++F  + + W KE+     N+ C+  +VGNK+D 
Sbjct: 66  ERFHALGPIYYRDSNGAILVYDITDEDSFQKVKN-WVKELRKMLGNEICL-CIVGNKIDL 123
Query: 133 DSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIME 178
           + ER VS +E  + A+  G+     SAK  + +E+ F  L  +++E
Sbjct: 124 EKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIE 169

>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With Gdp Length = 170

Iteration: 1
 Score =  105 bits (262), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 61/163 (37%), Positives = 89/163 (54%), Gaps = 3/163 (1%)
Query: 15  FKILLIGDSGVGKXXXXXXXXX-XXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQE 73
           FK++L+G+S VGK                  TIG  F  + + +    +K  IWDTAGQE
Sbjct: 7   FKLVLLGESPVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 74  RFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRD 133
           R+ +L   YYRGAQ  I+VYD+T  E+F    + W KE+   ++  + V  L GNK D  
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKN-WVKELQRQAS-PNIVIALSGNKADLA 124
Query: 134 SERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKI 176
           ++R V  +E  + A ++  LF+E SAKT  NV + F  +A K+
Sbjct: 125 NKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167

>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  105 bits (261), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 61/163 (37%), Positives = 89/163 (54%), Gaps = 3/163 (1%)
Query: 15  FKILLIGDSGVGKXXXXXXXXX-XXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQE 73
           FK++L+G+S VGK                  TIG  F  + + +    +K  IWDTAGQE
Sbjct: 7   FKLVLLGESKVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 74  RFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRD 133
           R+ +L   YYRGAQ  I+VYD+T  E+F    + W KE+   ++  + V  L GNK D  
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKN-WVKELQRQAS-PNIVIALSGNKADLA 124
Query: 134 SERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKI 176
           ++R V  +E  + A ++  LF+E SAKT  NV + F  +A K+
Sbjct: 125 NKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167

>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To Gmppnp Length = 179

Iteration: 1
 Score =  105 bits (261), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 62/160 (38%), Positives = 87/160 (54%), Gaps = 3/160 (1%)
Query: 15  FKILLIGDSGVGKXXXXXXXXXXXX-XXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQE 73
           FK++ +G+  VGK                  TIG+DF  K + +  + ++L +WDTAGQE
Sbjct: 15  FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 74
Query: 74  RFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRD 133
           RFR+L  SY R +   ++VYD+T   +F   S  W  +V       D + MLVGNK D  
Sbjct: 75  RFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSK-WIDDVRT-ERGSDVIIMLVGNKTDLS 132
Query: 134 SERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLA 173
            +R VS EEG   AKE   +F+E SAK   NV+Q F ++A
Sbjct: 133 DKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 172

>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex Length = 211

Iteration: 1
 Score =  105 bits (261), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 69/197 (35%), Positives = 102/197 (51%), Gaps = 4/197 (2%)
Query: 15  FKILLIGDSGVGKXXXXXXXXXXX-XXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQE 73
           FK++ +G+  VGK                  TIG+DF  K + +  + ++L +WDTAG E
Sbjct: 17  FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLE 76
Query: 74  RFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRD 133
           RFR+L  SY R +   ++VYD+T   +F   +  W  +V       D + MLVGNK D  
Sbjct: 77  RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTK-WIDDVRT-ERGSDVIIMLVGNKTDLA 134
Query: 134 SERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIMEVPSLLEEGSNVVKRN 193
            +R VS EEG   AKE   +F+E SAK   NV+Q F ++A  +  + S  ++ S     +
Sbjct: 135 DKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMES-TQDRSREDMID 193
Query: 194 ILKQKPENQSPPIGGCC 210
           I  +KP+ Q    GGC 
Sbjct: 194 IKLEKPQEQPVSEGGCL 210

>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  105 bits (261), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 61/163 (37%), Positives = 89/163 (54%), Gaps = 3/163 (1%)
Query: 15  FKILLIGDSGVGKXXXXXXXXX-XXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQE 73
           FK++L+G+S VGK                  TIG  F  + + +    +K  IWDTAGQE
Sbjct: 7   FKLVLLGESEVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 74  RFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRD 133
           R+ +L   YYRGAQ  I+VYD+T  E+F    + W KE+   ++  + V  L GNK D  
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKN-WVKELQRQAS-PNIVIALSGNKADLA 124
Query: 134 SERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKI 176
           ++R V  +E  + A ++  LF+E SAKT  NV + F  +A K+
Sbjct: 125 NKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167

>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  104 bits (260), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 61/163 (37%), Positives = 89/163 (54%), Gaps = 3/163 (1%)
Query: 15  FKILLIGDSGVGKXXXXXXXXX-XXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQE 73
           FK++L+G+S VGK                  TIG  F  + + +    +K  IWDTAGQE
Sbjct: 7   FKLVLLGESRVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 74  RFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRD 133
           R+ +L   YYRGAQ  I+VYD+T  E+F    + W KE+   ++  + V  L GNK D  
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKN-WVKELQRQAS-PNIVIALSGNKADLA 124
Query: 134 SERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKI 176
           ++R V  +E  + A ++  LF+E SAKT  NV + F  +A K+
Sbjct: 125 NKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167

>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase Length = 170

Iteration: 1
 Score =  104 bits (259), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 61/160 (38%), Positives = 87/160 (54%), Gaps = 3/160 (1%)
Query: 15  FKILLIGDSGVGKXXXXXXXXXXXX-XXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQE 73
           FK++ +G+  VGK                  TIG+DF  K + +  + ++L +WDTAGQE
Sbjct: 7   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQE 66
Query: 74  RFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRD 133
           RFR+L  SY R +   ++VYD+T   +F   +  W  +V       D + MLVGNK D  
Sbjct: 67  RFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTK-WIDDVRT-ERGSDVIIMLVGNKTDLA 124
Query: 134 SERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLA 173
            +R VS EEG   AKE   +F+E SAK   NV+Q F ++A
Sbjct: 125 DKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 164

>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  104 bits (259), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 61/163 (37%), Positives = 89/163 (54%), Gaps = 3/163 (1%)
Query: 15  FKILLIGDSGVGKXXXXXXXXX-XXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQE 73
           FK++L+G+S VGK                  TIG  F  + + +    +K  IWDTAGQE
Sbjct: 7   FKLVLLGESLVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 74  RFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRD 133
           R+ +L   YYRGAQ  I+VYD+T  E+F    + W KE+   ++  + V  L GNK D  
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKN-WVKELQRQAS-PNIVIALSGNKADLA 124
Query: 134 SERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKI 176
           ++R V  +E  + A ++  LF+E SAKT  NV + F  +A K+
Sbjct: 125 NKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167

>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed With Gdp Length = 162

Iteration: 1
 Score =  104 bits (259), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 61/163 (37%), Positives = 92/163 (56%), Gaps = 3/163 (1%)
Query: 15  FKILLIGDSGVGKXXXXXXXXXXXX-XXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQE 73
           +K++ +G+  VGK                  TIG+DF  K L +    ++L +WDTAGQE
Sbjct: 2   YKLVFLGEQAVGKTSIITRFXYDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQE 61
Query: 74  RFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRD 133
           RFR+L  SY R +   I+VYD+T R++F N +  W +++ L    +D +  LVGNK D  
Sbjct: 62  RFRSLIPSYIRDSAAAIVVYDITNRQSFENTTK-WIQDI-LNERGKDVIIALVGNKTDLG 119
Query: 134 SERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKI 176
             R V+ EEG   A+E+ + F E SAK   N++  F++ A K+
Sbjct: 120 DLRKVTYEEGXQKAQEYNTXFHETSAKAGHNIKVLFKKTASKL 162

>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score =  104 bits (259), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 67/177 (37%), Positives = 98/177 (55%), Gaps = 7/177 (3%)
Query: 13  LSFKILLIGDSGVGKXX-XXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAG 71
           L  K++L+GD GVGK                  TIGV+F  + L V G+ + L IWDTAG
Sbjct: 6   LLLKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDTAG 65
Query: 72  QERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVK---MLVGN 128
           QERF++L + +YRGA   +L + V  R++F NL + W KE   Y+  +D      +++GN
Sbjct: 66  QERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGN-WQKEFIYYADVKDPEHFPFVVLGN 124
Query: 129 KVDRDSERVVSREEGIALAKEHGSL-FLECSAKTRENVEQCFEQLALKIMEVPSLLE 184
           KVD++ +R V+ EE      E+G   +LE SAK   NV   FE+   +++ V   LE
Sbjct: 125 KVDKE-DRQVTTEEAQTWCMENGDYPYLETSAKDDTNVTVAFEEAVRQVLAVEEQLE 180

>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A Length = 181

Iteration: 1
 Score =  103 bits (258), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 64/179 (35%), Positives = 93/179 (51%), Gaps = 4/179 (2%)
Query: 2   GSSSGQSNSYDLSFKILLIGDSGVGKXXXXXXXXX-XXXXXXXPTIGVDFKIKLLTVAGK 60
           GS +   N   ++ K++L+GD G GK                  TIG  F  + L V   
Sbjct: 1   GSMAAAGNK-SINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDA 59
Query: 61  RLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQD 120
            +K  IWDTAGQER+ +L   YYRGA   I+V+DVT + +F   +  W +E+     N +
Sbjct: 60  TVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFER-AKKWVQELQA-QGNPN 117
Query: 121 CVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIMEV 179
            V  L GNK D    R V+ E+    A+E+G  F+E SAKT  NV++ F ++A ++  V
Sbjct: 118 MVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRLPRV 176

>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 200

Iteration: 1
 Score =  103 bits (258), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 65/181 (35%), Positives = 101/181 (55%), Gaps = 16/181 (8%)
Query: 11  YDLSFKILLIGDSGVGKXXXXXXXXXXXXX-XXXPTIGVDFKIKLLT--------VAGKR 61
           YD   K+L +GDSGVGK                  T+G+DF+ K +          +GK 
Sbjct: 8   YDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKA 67
Query: 62  LK--LTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEV--DLYST 117
            K  L +WDTAG ERFR+LT++++R A G +L++D+T +++F N+ + W  ++  + Y  
Sbjct: 68  FKVHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRN-WMSQLQANAYCE 126
Query: 118 NQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIM 177
           N D V  L+GNK D   +R V+  +   LA+++G  + E SA T +NVE+  E L   IM
Sbjct: 127 NPDIV--LIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLIM 184
Query: 178 E 178
           +
Sbjct: 185 K 185

>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 220

Iteration: 1
 Score =  103 bits (258), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 64/180 (35%), Positives = 101/180 (56%), Gaps = 14/180 (7%)
Query: 11  YDLSFKILLIGDSGVGKXXXXXXXXXXXXX-XXXPTIGVDFKIKLLT--------VAGKR 61
           YD   K+L +GDSGVGK                  T+G+DF+ K +          +GK 
Sbjct: 8   YDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKA 67
Query: 62  LK--LTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAK-EVDLYSTN 118
            K  L +WDTAG ERFR+LT++++R A G +L++D+T +++F N+ +  ++ + + Y  N
Sbjct: 68  FKVHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCEN 127
Query: 119 QDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIME 178
            D V  L+GNK D   +R V+  +   LA+++G  + E SA T +NVE+  E L   IM+
Sbjct: 128 PDIV--LIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLIMK 185

>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A Novel Antiviral Drug Target Length = 177

Iteration: 1
 Score =  102 bits (255), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 64/168 (38%), Positives = 93/168 (55%), Gaps = 7/168 (4%)
Query: 15  FKILLIGDSGVGKXXXXXXXXXXXXXXX-XPTIGVDFKIKLLTVAGKRLKLTIWDTAGQE 73
           FK++L+GD GVGK                  TIGV+F  K L V G  + + IWDTAGQE
Sbjct: 8   FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQE 67
Query: 74  RFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKM---LVGNKV 130
           RFR+L + +YRG+   +L + V   ++F NLS+ W KE   Y+  ++       ++GNK+
Sbjct: 68  RFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSN-WKKEFIYYADVKEPESFPFVILGNKI 126
Query: 131 DRDSERVVSREEGIALAKEHGSL-FLECSAKTRENVEQCFEQLALKIM 177
           D  SER VS EE  A  +++G   + E SAK   NV   FE+   +++
Sbjct: 127 DI-SERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVL 173

>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer With An Active Conformation Of Switch Ii Length = 177

Iteration: 1
 Score =  102 bits (255), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 64/168 (38%), Positives = 93/168 (55%), Gaps = 7/168 (4%)
Query: 15  FKILLIGDSGVGKXXXXXXXXXXXXXXX-XPTIGVDFKIKLLTVAGKRLKLTIWDTAGQE 73
           FK++L+GD GVGK                  TIGV+F  K L V G  + + IWDTAGQE
Sbjct: 10  FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQE 69
Query: 74  RFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKM---LVGNKV 130
           RFR+L + +YRG+   +L + V   ++F NLS+ W KE   Y+  ++       ++GNK+
Sbjct: 70  RFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSN-WKKEFIYYADVKEPESFPFVILGNKI 128
Query: 131 DRDSERVVSREEGIALAKEHGSL-FLECSAKTRENVEQCFEQLALKIM 177
           D  SER VS EE  A  +++G   + E SAK   NV   FE+   +++
Sbjct: 129 DI-SERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVL 175

>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2 Zinc Finger Of Eea1 Length = 168

Iteration: 1
 Score =  102 bits (255), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 60/163 (36%), Positives = 88/163 (53%), Gaps = 3/163 (1%)
Query: 15  FKILLIGDSGVGKXXXXXXXXX-XXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQE 73
           FK++L+G+S VGK                  TIG  F  + + +    +K  IWDTAG E
Sbjct: 6   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLE 65
Query: 74  RFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRD 133
           R+ +L   YYRGAQ  I+VYD+T  E+F    + W KE+   ++  + V  L GNK D  
Sbjct: 66  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKN-WVKELQRQAS-PNIVIALSGNKADLA 123
Query: 134 SERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKI 176
           ++R V  +E  + A ++  LF+E SAKT  NV + F  +A K+
Sbjct: 124 NKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 166

>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase Length = 179

Iteration: 1
 Score =  102 bits (254), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 66/168 (39%), Positives = 91/168 (54%), Gaps = 7/168 (4%)
Query: 15  FKILLIGDSGVGKXXXXXXXXXXXXXXX-XPTIGVDFKIKLLTVAGKRLKLTIWDTAGQE 73
           FKI+L+GD GVGK                  TIGV+F  K L V G  + + IWDTAGQE
Sbjct: 12  FKIILLGDGGVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQE 71
Query: 74  RFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKM---LVGNKV 130
           RFR+L + +YRG+   +L + V   ++F NLS+ W KE   Y+  ++       ++GNK 
Sbjct: 72  RFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSN-WKKEFIYYADVKEPESFPFVILGNKT 130
Query: 131 DRDSERVVSREEGIALAKEHGSL-FLECSAKTRENVEQCFEQLALKIM 177
           D   ER VS EE  A  K++G   + E SAK   NV   FE+   +I+
Sbjct: 131 DI-KERQVSTEEAQAWCKDNGDYPYFETSAKDSTNVAAAFEEAVRRIL 177

>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33 Gtpase Bound To Gdp And Alf3 Length = 198

Iteration: 1
 Score =  102 bits (254), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 61/167 (36%), Positives = 85/167 (50%), Gaps = 6/167 (3%)
Query: 15  FKILLIGDSGVGKXXXXXXXXX-XXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQE 73
           FKI++IGDS VGK                  TIGVDF+ + + + G+R+K+ +WDTAGQE
Sbjct: 30  FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQE 89
Query: 74  RFR-TLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDR 132
           RFR ++   YYR    ++ VYD T   +F +L   W +E   +    D  ++LVGNK D 
Sbjct: 90  RFRKSMVQHYYRNVHAVVFVYDXTNXASFHSLP-AWIEECKQHLLANDIPRILVGNKCDL 148
Query: 133 DSERVVSREEGIALAKEHGSLFLECSAKT---RENVEQCFEQLALKI 176
            S   V  +     A  H     E SAK     ++VE  F  LA K+
Sbjct: 149 RSAIQVPTDLAQKFADTHSXPLFETSAKNPNDNDHVEAIFXTLAHKL 195

>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp Bound Form At 1.8 Resolution Length = 162

Iteration: 1
 Score =  102 bits (254), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 61/160 (38%), Positives = 87/160 (54%), Gaps = 3/160 (1%)
Query: 15  FKILLIGDSGVGKXXXXXXXXXXXX-XXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQE 73
           FK++ +G+  VGK                  TIG+DF  K + +  + ++L +WDTAGQE
Sbjct: 2   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 61
Query: 74  RFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRD 133
           RFR+L  SY R +   ++VYD+T   +F   +  W  +V       D + MLVGNK D  
Sbjct: 62  RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTK-WIDDVRT-ERGSDVIIMLVGNKTDLA 119
Query: 134 SERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLA 173
            +R VS EEG   AKE   +F+E SAK   NV+Q F ++A
Sbjct: 120 DKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 159

>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase Length = 189

Iteration: 1
 Score =  102 bits (253), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 61/167 (36%), Positives = 86/167 (51%), Gaps = 6/167 (3%)
Query: 15  FKILLIGDSGVGKXXXXXXX-XXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQE 73
           FKI++IGDS VGK                  TIGVDF+ + + + G+R+K+ +WDTAGQE
Sbjct: 21  FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQE 80
Query: 74  RFR-TLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDR 132
           RFR ++   YYR    ++ VYD+T   +F +L   W +E   +    D  ++LVGNK D 
Sbjct: 81  RFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLP-AWIEECKQHLLANDIPRILVGNKCDL 139
Query: 133 DSERVVSREEGIALAKEHGSLFLECSAKT---RENVEQCFEQLALKI 176
            S   V  +     A  H     E SAK     ++VE  F  LA K+
Sbjct: 140 RSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKL 186

>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp Analogue Length = 192

Iteration: 1
 Score =  101 bits (252), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 56/163 (34%), Positives = 87/163 (53%), Gaps = 3/163 (1%)
Query: 15  FKILLIGDSGVGKXXXX-XXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQE 73
            K+ L+GD+GVGK                 PTIG  F  K +    +  K  IWDTAGQE
Sbjct: 24  LKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQE 83
Query: 74  RFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRD 133
           RF +L   YYRG+   ++VYD+T++++F  L   W KE+  +   ++ V  + GNK D  
Sbjct: 84  RFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKK-WVKELKEHGP-ENIVMAIAGNKCDLS 141
Query: 134 SERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKI 176
             R V  ++    A+  G++ +E SAK   N+E+ F+ ++ +I
Sbjct: 142 DIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQI 184

>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed With The Slp Homology Domain Of Slac2-AMELANOPHILIN Length = 203

Iteration: 1
 Score =  101 bits (251), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 64/181 (35%), Positives = 98/181 (54%), Gaps = 16/181 (8%)
Query: 5   SGQSNSYDLSFKILLIGDSGVGKXXXXXXXXXXXXX-XXXPTIGVDFKIKLLT------- 56
           S     YD   K+L +GDSGVGK                  T+G+DF+ K +        
Sbjct: 2   SXTDGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGAD 61
Query: 57  -VAGKRLK--LTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEV- 112
             +GK  K  L +WDTAG ERFR+LT++++R A G +L +D+T +++F N+ + W  ++ 
Sbjct: 62  GASGKAFKVHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRN-WXSQLQ 120
Query: 113 -DLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQ 171
            + Y  N D V  L+GNK D   +R V+  +   LA+++G  + E SA T +NVE+  E 
Sbjct: 121 ANAYCENPDIV--LIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVET 178
Query: 172 L 172
           L
Sbjct: 179 L 179

>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Hexagonal Space Group Length = 195

Iteration: 1
 Score =  101 bits (251), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 64/181 (35%), Positives = 98/181 (54%), Gaps = 16/181 (8%)
Query: 5   SGQSNSYDLSFKILLIGDSGVGKXXXXXXXXXXXXX-XXXPTIGVDFKIKLLT------- 56
           S     YD   K+L +GDSGVGK                  T+G+DF+ K +        
Sbjct: 2   SXTDGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGAD 61
Query: 57  -VAGKRLK--LTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEV- 112
             +GK  K  L +WDTAG ERFR+LT++++R A G +L +D+T +++F N+ + W  ++ 
Sbjct: 62  GASGKAFKVHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRN-WXSQLQ 120
Query: 113 -DLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQ 171
            + Y  N D V  L+GNK D   +R V+  +   LA+++G  + E SA T +NVE+  E 
Sbjct: 121 ANAYCENPDIV--LIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVET 178
Query: 172 L 172
           L
Sbjct: 179 L 179

>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase Length = 169

Iteration: 1
 Score =  100 bits (248), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 58/163 (35%), Positives = 83/163 (50%), Gaps = 3/163 (1%)
Query: 15  FKILLIGDSGVGKXXXX-XXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQE 73
            K+ L+GD+GVGK                 PTIG  F  K +    +  K  IWDTAGQE
Sbjct: 6   LKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGQE 65
Query: 74  RFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRD 133
           RFR L   YYRG+   I+VYD+T+ ETF+ L + W +E+  +      V  + GNK D  
Sbjct: 66  RFRALAPMYYRGSAAAIIVYDITKEETFSTLKN-WVRELRQHGP-PSIVVAIAGNKCDLT 123
Query: 134 SERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKI 176
             R V   +    A    ++F+E SAK   N+ + F +++ +I
Sbjct: 124 DVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI 166

>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188

Iteration: 1
 Score = 99.8 bits (247), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 60/160 (37%), Positives = 86/160 (53%), Gaps = 3/160 (1%)
Query: 15  FKILLIGDSGVGKXXXXXXXXXXX-XXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQE 73
           FK++ +G+  VGK                  TIG+DF  K + +  + ++L +WDTAG E
Sbjct: 7   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLE 66
Query: 74  RFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRD 133
           RFR+L  SY R +   ++VYD+T   +F   +  W  +V       D + MLVGNK D  
Sbjct: 67  RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTK-WIDDVRT-ERGSDVIIMLVGNKTDLA 124
Query: 134 SERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLA 173
            +R VS EEG   AKE   +F+E SAK   NV+Q F ++A
Sbjct: 125 DKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 164

>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182

Iteration: 1
 Score = 97.8 bits (242), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 63/167 (37%), Positives = 96/167 (57%), Gaps = 10/167 (5%)
Query: 15  FKILLIGDSGVGKXX-XXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLK-LTIWDTAGQ 72
            K++++GDSGVGK                  TIG DF  K +TV G ++  + +WDTAGQ
Sbjct: 9   LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQ 68
Query: 73  ERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYS---TNQDCVKMLVGNK 129
           ERF++L  ++YRGA   +LVYDVT   +F N+   W  E  +++   + +    +++GNK
Sbjct: 69  ERFQSLGVAFYRGADCCVLVYDVTNASSFENIKS-WRDEFLVHANVNSPETFPFVILGNK 127
Query: 130 VD-RDSERVVSREEGIALAKEHGS--LFLECSAKTRENVEQCFEQLA 173
           +D  +S+++VS +    LAK  G   LFL  SAK   NV+  FE++A
Sbjct: 128 IDAEESKKIVSEKSAQELAKSLGDIPLFL-TSAKNAINVDTAFEEIA 173

>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex With Monoprenylated Rab7 Protein Length = 207

Iteration: 1
 Score = 97.4 bits (241), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 57/163 (34%), Positives = 89/163 (54%), Gaps = 5/163 (3%)
Query: 15  FKILLIGDSGVGKXX-XXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQE 73
            K++++GDSGVGK                  TIG DF  K + V  + + + IWDTAGQE
Sbjct: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQE 68
Query: 74  RFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVK---MLVGNKV 130
           RF++L  ++YRGA   +LV+DVT   TF  L D W  E  + ++ +D      +++GNK+
Sbjct: 69  RFQSLGVAFYRGADCCVLVFDVTAPNTFKTL-DSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 131 DRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLA 173
           D ++ +V ++        ++   + E SAK   NVEQ F+ +A
Sbjct: 128 DLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIA 170

>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7 Length = 207

Iteration: 1
 Score = 97.4 bits (241), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 57/162 (35%), Positives = 89/162 (54%), Gaps = 5/162 (3%)
Query: 16  KILLIGDSGVGKXX-XXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER 74
           K++++GDSGVGK                  TIG DF  K + V  + + + IWDTAGQER
Sbjct: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQER 69
Query: 75  FRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVK---MLVGNKVD 131
           F++L  ++YRGA   +LV+DVT   TF  L D W  E  + ++ +D      +++GNK+D
Sbjct: 70  FQSLGVAFYRGADCCVLVFDVTAPNTFKTL-DSWRDEFLIQASPRDPENFPFVVLGNKID 128
Query: 132 RDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLA 173
            ++ +V ++        ++   + E SAK   NVEQ F+ +A
Sbjct: 129 FENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIA 170

>pdb|1VG1|A Chain A, Gdp-bound Rab7 Length = 185

Iteration: 1
 Score = 97.1 bits (240), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 57/162 (35%), Positives = 89/162 (54%), Gaps = 5/162 (3%)
Query: 16  KILLIGDSGVGKXX-XXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER 74
           K++++GDSGVGK                  TIG DF  K + V  + + + IWDTAGQER
Sbjct: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQER 69
Query: 75  FRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVK---MLVGNKVD 131
           F++L  ++YRGA   +LV+DVT   TF  L D W  E  + ++ +D      +++GNK+D
Sbjct: 70  FQSLGVAFYRGADCCVLVFDVTAPNTFKTL-DSWRDEFLIQASPRDPENFPFVVLGNKID 128
Query: 132 RDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLA 173
            ++ +V ++        ++   + E SAK   NVEQ F+ +A
Sbjct: 129 LENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIA 170

>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With The Minimal Rab Binding Domain Of Rabenosyn-5 Length = 170

Iteration: 1
 Score = 97.1 bits (240), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 57/163 (34%), Positives = 82/163 (50%), Gaps = 3/163 (1%)
Query: 15  FKILLIGDSGVGKXXXX-XXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQE 73
            K+ L+GD+GVGK                 PTIG  F  K +    +  K  IWDTAG E
Sbjct: 7   LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE 66
Query: 74  RFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRD 133
           RFR L   YYRG+   I+VYD+T+ ETF+ L + W +E+  +      V  + GNK D  
Sbjct: 67  RFRALAPMYYRGSAAAIIVYDITKEETFSTLKN-WVRELRQHGP-PSIVVAIAGNKCDLT 124
Query: 134 SERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKI 176
             R V   +    A    ++F+E SAK   N+ + F +++ +I
Sbjct: 125 DVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI 167

>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp) Length = 207

Iteration: 1
 Score = 94.4 bits (233), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 56/163 (34%), Positives = 88/163 (53%), Gaps = 5/163 (3%)
Query: 15  FKILLIGDSGVGKXX-XXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQE 73
            K++++GDSGVGK                  TIG DF  K + V  + + + IWDTAG E
Sbjct: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGLE 68
Query: 74  RFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVK---MLVGNKV 130
           RF++L  ++YRGA   +LV+DVT   TF  L D W  E  + ++ +D      +++GNK+
Sbjct: 69  RFQSLGVAFYRGADCCVLVFDVTAPNTFKTL-DSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 131 DRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLA 173
           D ++ +V ++        ++   + E SAK   NVEQ F+ +A
Sbjct: 128 DLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIA 170

>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group Length = 168

Iteration: 1
 Score = 88.6 bits (218), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 57/168 (33%), Positives = 87/168 (51%), Gaps = 4/168 (2%)
Query: 12  DLSFKILLIGDSGVGKXXXXXXX-XXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTA 70
           +++ K++++G+  VGK                  TIGVDF  + + V  + ++L +WDTA
Sbjct: 3   EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTA 62
Query: 71  GQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKV 130
           GQE F  +T +YYRGAQ  +LV+  T RE+F  +S  W ++V   +   D    LV NK+
Sbjct: 63  GQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISS-WREKV--VAEVGDIPTALVQNKI 119
Query: 131 DRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIME 178
           D   +  +  EE   LAK     F   S K   NV + F+ LA K ++
Sbjct: 120 DLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHLQ 167

>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive (Gdp-3'p- Bound) Form Length = 178

Iteration: 1
 Score = 87.4 bits (215), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 58/174 (33%), Positives = 91/174 (52%), Gaps = 5/174 (2%)
Query: 10  SYDLSFKILLIGDSGVGKXXXXX-XXXXXXXXXXXPTIGVDFKIKLLTVAGK-RLKLTIW 67
           S+    KI+++GD   GK                  TIG+DF ++ +T+ G   + L IW
Sbjct: 2   SHMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIW 61
Query: 68  DTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVW--AKEVDLYSTNQDCVKML 125
           D  GQ     +   Y  GAQG++LVYD+T  ++F NL D +   K+V   S  Q  V  L
Sbjct: 62  DIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVA-L 120
Query: 126 VGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIMEV 179
           VGNK+D +  R +  E+ +   +E+G      SAKT ++V  CF+++A +I+ +
Sbjct: 121 VGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEILGI 174

>pdb|2BKU|A Chain A, Kap95p:rangtp Complex Length = 177

Iteration: 1
 Score = 87.0 bits (214), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 55/171 (32%), Positives = 87/171 (50%), Gaps = 6/171 (3%)
Query: 13  LSFKILLIGDSGVGKXXXXXXXXX-XXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAG 71
           + FK++L+GD G GK                 PT+GV+    +       +K  +WDTAG
Sbjct: 9   VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAG 68
Query: 72  QERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVD 131
           QE+F  L   YY  AQ  I+++DVT R T+ N+ + W +  DL    ++   +L GNKVD
Sbjct: 69  QEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPN-WHR--DLVRVCENIPIVLCGNKVD 125
Query: 132 RDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIMEVPSL 182
               +V  + + I   ++    + + SAK+  N E+ F  LA K++  P+L
Sbjct: 126 IKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNL 174

>pdb|1BYU|A Chain A, Canine Gdp-Ran Length = 216

Iteration: 1
 Score = 87.0 bits (214), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 55/171 (32%), Positives = 87/171 (50%), Gaps = 6/171 (3%)
Query: 13  LSFKILLIGDSGVGKXXXXXXXXX-XXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAG 71
           + FK++L+GD G GK                 PT+GV+    +       +K  +WDTAG
Sbjct: 9   VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAG 68
Query: 72  QERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVD 131
           QE+F  L   YY  AQ  I+++DVT R T+ N+ + W +  DL    ++   +L GNKVD
Sbjct: 69  QEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPN-WHR--DLVRVCENIPIVLCGNKVD 125
Query: 132 RDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIMEVPSL 182
               +V  + + I   ++    + + SAK+  N E+ F  LA K++  P+L
Sbjct: 126 IKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNL 174

>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex Length = 167

Iteration: 1
 Score = 87.0 bits (214), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 57/164 (34%), Positives = 89/164 (54%), Gaps = 4/164 (2%)
Query: 15  FKILLIGDSGVGKXXXXXXXXX-XXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQE 73
           +K++++G  GVGK                 PTI   ++ K + V  ++  L I DTAG E
Sbjct: 4   YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDAQQCMLEILDTAGTE 62
Query: 74  RFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRD 133
           +F  +   Y +  QG  LVY +T + TF +L D+  + + +  T+ D   +LVGNK D +
Sbjct: 63  QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTD-DVPMILVGNKCDLE 121
Query: 134 SERVVSREEGIALAKE-HGSLFLECSAKTRENVEQCFEQLALKI 176
            ERVV +E+G  LA++ +   FLE SAK++ NV + F  L  +I
Sbjct: 122 DERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQI 165

>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1 Length = 169

Iteration: 1
 Score = 86.7 bits (213), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 57/164 (34%), Positives = 89/164 (54%), Gaps = 4/164 (2%)
Query: 15  FKILLIGDSGVGKXXXXXXXXX-XXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQE 73
           +K++++G  GVGK                 PTI   ++ K + V  ++  L I DTAG E
Sbjct: 6   YKLVVLGSVGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDAQQCMLEILDTAGTE 64
Query: 74  RFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRD 133
           +F  +   Y +  QG  LVY +T + TF +L D+  + + +  T+ D   +LVGNK D +
Sbjct: 65  QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTD-DVPMILVGNKCDLE 123
Query: 134 SERVVSREEGIALAKE-HGSLFLECSAKTRENVEQCFEQLALKI 176
            ERVV +E+G  LA++ +   FLE SAK++ NV + F  L  +I
Sbjct: 124 DERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQI 167

>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras, In The Gdp- Bound State Length = 181

Iteration: 1
 Score = 85.5 bits (210), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 48/129 (37%), Positives = 70/129 (54%), Gaps = 2/129 (1%)
Query: 44  PTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTN 103
           PTI  D   K+ +V G   +L I DTAGQE F  +   Y R   G +LV+ +  R++F  
Sbjct: 40  PTIE-DSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNE 98
Query: 104 LSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRE 163
           +  ++ + + +   + D   +LVGNK D +S+R V R E  A    H   + E SAK R 
Sbjct: 99  VGKLFTQILRVKDRD-DFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRL 157
Query: 164 NVEQCFEQL 172
           NV++ FEQL
Sbjct: 158 NVDEAFEQL 166

>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From Encephalitozoon Cuniculi Bound To Gdp-Mg2+ Length = 218

Iteration: 1
 Score = 84.7 bits (208), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 59/174 (33%), Positives = 84/174 (48%), Gaps = 4/174 (2%)
Query: 12  DLSFKILLIGDSGVGKXXXXXXXXX-XXXXXXXPTIG-VDFKIKLLTVAGKRLKLTIWDT 69
           +L++KI LIGD GVGK                  T+G V+  +  L   G  +K  +WDT
Sbjct: 9   ELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDT 68
Query: 70  AGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNK 129
           AGQE+   L   YY GA G IL +DVT R T  NL+  W KE      N+  + ++  NK
Sbjct: 69  AGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLAR-WVKEFQAVVGNEAPI-VVCANK 126
Query: 130 VDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIMEVPSLL 183
           +D  + + +S++  + + K     + E SAKT  N    F  LA      P L+
Sbjct: 127 IDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLARIFTGRPDLI 180

>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras- Binding-Domain Of C-Raf1 Kinase (Rafrbd) Length = 167

Iteration: 1
 Score = 84.3 bits (207), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 57/164 (34%), Positives = 88/164 (53%), Gaps = 4/164 (2%)
Query: 15  FKILLIGDSGVGKXXXXXXXXX-XXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQE 73
           +K++++G  GVGK                 PTI   ++ K + V  ++  L I DTAG E
Sbjct: 4   YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDCQQCMLEILDTAGTE 62
Query: 74  RFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRD 133
           +F  +   Y +  QG  LVY +T + TF +L D+  + + +  T +D   +LVGNK D +
Sbjct: 63  QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDT-EDVPMILVGNKCDLE 121
Query: 134 SERVVSREEGIALAKEH-GSLFLECSAKTRENVEQCFEQLALKI 176
            ERVV +E+G  LA++     FLE SAK++ NV + F  L  +I
Sbjct: 122 DERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165

>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e) Complexed With Gppnhp And The Ras-Binding-Domain Of Human C-Raf1, Residues 51-131 Length = 167

Iteration: 1
 Score = 84.3 bits (207), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 57/164 (34%), Positives = 88/164 (53%), Gaps = 4/164 (2%)
Query: 15  FKILLIGDSGVGKXXXXXXXXX-XXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQE 73
           +K++++G  GVGK                 PTI   ++ K + V  ++  L I DTAG E
Sbjct: 4   YKLVVLGSGGVGKSALTVQFVQGIFVDEYDPTIEDSYR-KQVEVDCQQCMLEILDTAGTE 62
Query: 74  RFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRD 133
           +F  +   Y +  QG  LVY +T + TF +L D+  + + +  T +D   +LVGNK D +
Sbjct: 63  QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDT-EDVPMILVGNKCDLE 121
Query: 134 SERVVSREEGIALAKEH-GSLFLECSAKTRENVEQCFEQLALKI 176
            ERVV +E+G  LA++     FLE SAK++ NV + F  L  +I
Sbjct: 122 DERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165

>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex Length = 221

Iteration: 1
 Score = 84.0 bits (206), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 55/180 (30%), Positives = 88/180 (48%), Gaps = 6/180 (3%)
Query: 4   SSGQSNSYDLSFKILLIGDSGVGKXXXXXXXXX-XXXXXXXPTIGVDFKIKLLTVAGKRL 62
           +S       + FK++L+GD G GK                  T+GV+    +       +
Sbjct: 5   ASAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGESEKKYVATLGVEVHPLVFHTNRGPI 64
Query: 63  KLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCV 122
           K  +WDTAGQE+F  L   YY  AQ  I+++DVT R T+ N+ + W +  DL    ++  
Sbjct: 65  KFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPN-WHR--DLVRVCENIP 121
Query: 123 KMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIMEVPSL 182
            +L GNKVD    +V  + + I   ++    + + SAK+  N E+ F  LA K++  P+L
Sbjct: 122 IVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNL 179

>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp Length = 221

Iteration: 1
 Score = 84.0 bits (206), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 55/180 (30%), Positives = 88/180 (48%), Gaps = 6/180 (3%)
Query: 4   SSGQSNSYDLSFKILLIGDSGVGKXXXXXXXXX-XXXXXXXPTIGVDFKIKLLTVAGKRL 62
           +S       + FK++L+GD G GK                  T+GV+    +       +
Sbjct: 5   ASAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPI 64
Query: 63  KLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCV 122
           K  +WDTAGQE+F  L   YY  AQ  I+++DVT R T+ N+ + W +  DL    ++  
Sbjct: 65  KFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPN-WHR--DLVRVCENIP 121
Query: 123 KMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIMEVPSL 182
            +L GNKVD    +V  + + I   ++    + + SAK+  N E+ F  LA K++  P+L
Sbjct: 122 IVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNL 179

>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its Cargo (Kap60p) And Rangtp Length = 176

Iteration: 1
 Score = 83.6 bits (205), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 54/171 (31%), Positives = 86/171 (50%), Gaps = 6/171 (3%)
Query: 13  LSFKILLIGDSGVGKXXXXXXXXX-XXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAG 71
           + FK++L+GD G GK                  T+GV+    +       +K  +WDTAG
Sbjct: 9   VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAG 68
Query: 72  QERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVD 131
           QE+F  L   YY  AQ  I+++DVT R T+ N+ + W +  DL    ++   +L GNKVD
Sbjct: 69  QEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPN-WHR--DLVRVCENIPIVLCGNKVD 125
Query: 132 RDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIMEVPSL 182
               +V  + + I   ++    + + SAK+  N E+ F  LA K++  P+L
Sbjct: 126 IKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNL 174

>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant Length = 216

Iteration: 1
 Score = 83.6 bits (205), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 54/171 (31%), Positives = 86/171 (50%), Gaps = 6/171 (3%)
Query: 13  LSFKILLIGDSGVGKXXXXXXXXX-XXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAG 71
           + FK++L+GD G GK                  T+GV+    +       +K  +WDTAG
Sbjct: 9   VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAG 68
Query: 72  QERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVD 131
           QE+F  L   YY  AQ  I+++DVT R T+ N+ + W +  DL    ++   +L GNKVD
Sbjct: 69  QEKFGGLEDGYYIQAQCAIIMFDVTSRVTYKNVPN-WHR--DLVRVCENIPIVLCGNKVD 125
Query: 132 RDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIMEVPSL 182
               +V  + + I   ++    + + SAK+  N E+ F  LA K++  P+L
Sbjct: 126 IKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNL 174

>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex Length = 204

Iteration: 1
 Score = 83.6 bits (205), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 54/171 (31%), Positives = 86/171 (50%), Gaps = 6/171 (3%)
Query: 13  LSFKILLIGDSGVGKXXXXXXXXX-XXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAG 71
           + FK++L+GD G GK                  T+GV+    +       +K  +WDTAG
Sbjct: 2   VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAG 61
Query: 72  QERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVD 131
           QE+F  L   YY  AQ  I+++DVT R T+ N+ + W +  DL    ++   +L GNKVD
Sbjct: 62  QEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPN-WHR--DLVRVCENIPIVLCGNKVD 118
Query: 132 RDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIMEVPSL 182
               +V  + + I   ++    + + SAK+  N E+ F  LA K++  P+L
Sbjct: 119 IKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNL 167

>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex Length = 216

Iteration: 1
 Score = 83.2 bits (204), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 54/171 (31%), Positives = 86/171 (50%), Gaps = 6/171 (3%)
Query: 13  LSFKILLIGDSGVGKXXXXXXXXX-XXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAG 71
           + FK++L+GD G GK                  T+GV+    +       +K  +WDTAG
Sbjct: 9   VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAG 68
Query: 72  QERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVD 131
           QE+F  L   YY  AQ  I+++DVT R T+ N+ + W +  DL    ++   +L GNKVD
Sbjct: 69  QEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPN-WHR--DLVRVCENIPIVLCGNKVD 125
Query: 132 RDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIMEVPSL 182
               +V  + + I   ++    + + SAK+  N E+ F  LA K++  P+L
Sbjct: 126 IKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNL 174

>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt The Gtp- Bound Conformation: Implications For Nuclear Import Complex Assembly Dynamics Length = 216

Iteration: 1
 Score = 83.2 bits (204), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 54/171 (31%), Positives = 86/171 (50%), Gaps = 6/171 (3%)
Query: 13  LSFKILLIGDSGVGKXXXXXXXXX-XXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAG 71
           + FK++L+GD G GK                  T+GV+    +       +K  +WDTAG
Sbjct: 9   VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAG 68
Query: 72  QERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVD 131
           QE+F  L   YY  AQ  I+++DVT R T+ N+ + W +  DL    ++   +L GNKVD
Sbjct: 69  QEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPN-WHR--DLVRVCENIPIVLCGNKVD 125
Query: 132 RDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIMEVPSL 182
               +V  + + I   ++    + + SAK+  N E+ F  LA K++  P+L
Sbjct: 126 IKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNL 174

>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex With Pde6d Length = 181

Iteration: 1
 Score = 83.2 bits (204), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 52/132 (39%), Positives = 72/132 (54%), Gaps = 2/132 (1%)
Query: 44  PTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTN 103
           PTI   F  KL+TV G+   L + DTAGQ+ +     +Y     G ILVY VT  ++F  
Sbjct: 37  PTIENTFT-KLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEV 95
Query: 104 LSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRE 163
           +  +  K +D+    Q  + MLVGNK D   ERV+S EEG ALA+   + FLE SAK  +
Sbjct: 96  IKVIHGKLLDMVGKVQIPI-MLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQ 154
Query: 164 NVEQCFEQLALK 175
                F ++ L+
Sbjct: 155 TAVDVFRRIILE 166

>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp Length = 177

Iteration: 1
 Score = 83.2 bits (204), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 52/132 (39%), Positives = 72/132 (54%), Gaps = 2/132 (1%)
Query: 44  PTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTN 103
           PTI   F  KL+TV G+   L + DTAGQ+ +     +Y     G ILVY VT  ++F  
Sbjct: 37  PTIENTFT-KLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEV 95
Query: 104 LSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRE 163
           +  +  K +D+    Q  + MLVGNK D   ERV+S EEG ALA+   + FLE SAK  +
Sbjct: 96  IKVIHGKLLDMVGKVQIPI-MLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQ 154
Query: 164 NVEQCFEQLALK 175
                F ++ L+
Sbjct: 155 TAVDVFRRIILE 166

>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp Length = 169

Iteration: 1
 Score = 82.8 bits (203), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 52/132 (39%), Positives = 72/132 (54%), Gaps = 2/132 (1%)
Query: 44  PTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTN 103
           PTI   F  KL+TV G+   L + DTAGQ+ +     +Y     G ILVY VT  ++F  
Sbjct: 32  PTIENTFT-KLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEV 90
Query: 104 LSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRE 163
           +  +  K +D+    Q  + MLVGNK D   ERV+S EEG ALA+   + FLE SAK  +
Sbjct: 91  IKVIHGKLLDMVGKVQIPI-MLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQ 149
Query: 164 NVEQCFEQLALK 175
                F ++ L+
Sbjct: 150 TAVDVFRRIILE 161

>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound Forms Length = 167

Iteration: 1
 Score = 82.8 bits (203), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 52/132 (39%), Positives = 72/132 (54%), Gaps = 2/132 (1%)
Query: 44  PTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTN 103
           PTI   F  KL+TV G+   L + DTAGQ+ +     +Y     G ILVY VT  ++F  
Sbjct: 35  PTIENTFT-KLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEV 93
Query: 104 LSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRE 163
           +  +  K +D+    Q  + MLVGNK D   ERV+S EEG ALA+   + FLE SAK  +
Sbjct: 94  IKVIHGKLLDMVGKVQIPI-MLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQ 152
Query: 164 NVEQCFEQLALK 175
                F ++ L+
Sbjct: 153 TAVDVFRRIILE 164

>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear Transport Complex Length = 216

Iteration: 1
 Score = 82.8 bits (203), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 54/171 (31%), Positives = 85/171 (49%), Gaps = 6/171 (3%)
Query: 13  LSFKILLIGDSGVGKXXXXXXXXX-XXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAG 71
           + FK++L+GD G GK                  T+GV+    +       +K  +WDTAG
Sbjct: 9   VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAG 68
Query: 72  QERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVD 131
           QE+F  L   YY  AQ  I+ +DVT R T+ N+ + W +  DL    ++   +L GNKVD
Sbjct: 69  QEKFGGLRDGYYIQAQCAIIXFDVTSRVTYKNVPN-WHR--DLVRVCENIPIVLCGNKVD 125
Query: 132 RDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIMEVPSL 182
               +V  + + I   ++    + + SAK+  N E+ F  LA K++  P+L
Sbjct: 126 IKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNL 174

>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant Length = 216

Iteration: 1
 Score = 82.0 bits (201), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 53/171 (30%), Positives = 86/171 (50%), Gaps = 6/171 (3%)
Query: 13  LSFKILLIGDSGVGKXXXXXXXXX-XXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAG 71
           + FK++L+GD G GK                  T+GV+    +       +K  +WDTAG
Sbjct: 9   VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAG 68
Query: 72  QERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVD 131
           QE++  L   YY  AQ  I+++DVT R T+ N+ + W +  DL    ++   +L GNKVD
Sbjct: 69  QEKYGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPN-WHR--DLVRVCENIPIVLCGNKVD 125
Query: 132 RDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIMEVPSL 182
               +V  + + I   ++    + + SAK+  N E+ F  LA K++  P+L
Sbjct: 126 IKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNL 174

>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex Length = 182

Iteration: 1
 Score = 81.6 bits (200), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 56/182 (30%), Positives = 89/182 (48%), Gaps = 7/182 (3%)
Query: 2   GSSSGQSNSYDLSFKILLIGDSGVGKXXXXXXXXX-XXXXXXXPTIGVDFKIKLLTVAGK 60
           GS + Q     + FK++L+GD G GK                  T+GV+    +      
Sbjct: 1   GSMAAQGEP-QVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG 59
Query: 61  RLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQD 120
            +K  +WDTAG E+F  L   YY  AQ  I+++DVT R T+ N+ + W +  DL    ++
Sbjct: 60  PIKFNVWDTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPN-WHR--DLVRVCEN 116
Query: 121 CVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIMEVP 180
              +L GNKVD    +V  + + I   ++    + + SAK+  N E+ F  LA K++  P
Sbjct: 117 IPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDP 174
Query: 181 SL 182
           +L
Sbjct: 175 NL 176

>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear Export Complex Length = 176

Iteration: 1
 Score = 80.5 bits (197), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 53/171 (30%), Positives = 85/171 (49%), Gaps = 6/171 (3%)
Query: 13  LSFKILLIGDSGVGKXXXXXXXXX-XXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAG 71
           + FK++L+GD G GK                  T+GV+    +       +K  +WDTAG
Sbjct: 5   VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAG 64
Query: 72  QERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVD 131
            E+F  L   YY  AQ  I+++DVT R T+ N+ + W +  DL    ++   +L GNKVD
Sbjct: 65  LEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPN-WHR--DLVRVCENIPIVLCGNKVD 121
Query: 132 RDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIMEVPSL 182
               +V  + + I   ++    + + SAK+  N E+ F  LA K++  P+L
Sbjct: 122 IKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNL 170

>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex Length = 178

Iteration: 1
 Score = 80.5 bits (197), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 49/162 (30%), Positives = 85/162 (52%), Gaps = 2/162 (1%)
Query: 16  KILLIGDSGVGKXXXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERF 75
           K++++G  GVGK                     D   K + + G+ +++ I DTAG E +
Sbjct: 9   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGLEDY 68
Query: 76  RTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLV-GNKVDRDS 134
             +  +Y+R  +G +LV+ +T  E+FT  ++ + +++      +D + +LV GNK D + 
Sbjct: 69  AAIRDNYFRSGEGFLLVFSITEHESFTATAE-FREQILRVKAEEDKIPLLVVGNKSDLEE 127
Query: 135 ERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKI 176
            R V  EE  + A+E G  ++E SAKTR NV++ F  L  +I
Sbjct: 128 RRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREI 169

>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb In Its Active Conformation: Significance For Effector Protein Binding Length = 174

Iteration: 1
 Score = 80.5 bits (197), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 49/162 (30%), Positives = 85/162 (52%), Gaps = 2/162 (1%)
Query: 16  KILLIGDSGVGKXXXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERF 75
           K++++G  GVGK                     D   K + + G+ +++ I DTAG E +
Sbjct: 5   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGLEDY 64
Query: 76  RTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLV-GNKVDRDS 134
             +  +Y+R  +G +LV+ +T  E+FT  ++ + +++      +D + +LV GNK D + 
Sbjct: 65  AAIRDNYFRSGEGFLLVFSITEHESFTATAE-FREQILRVKAEEDKIPLLVVGNKSDLEE 123
Query: 135 ERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKI 176
            R V  EE  + A+E G  ++E SAKTR NV++ F  L  +I
Sbjct: 124 RRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREI 165

>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant Length = 216

Iteration: 1
 Score = 80.1 bits (196), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 53/171 (30%), Positives = 85/171 (49%), Gaps = 6/171 (3%)
Query: 13  LSFKILLIGDSGVGKXXXXXXXXX-XXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAG 71
           + FK++L+GD G GK                  T+GV+    +       +K  +WDTAG
Sbjct: 9   VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAG 68
Query: 72  QERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVD 131
            E+F  L   YY  AQ  I+++DVT R T+ N+ + W +  DL    ++   +L GNKVD
Sbjct: 69  LEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPN-WHR--DLVRVCENIPIVLCGNKVD 125
Query: 132 RDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIMEVPSL 182
               +V  + + I   ++    + + SAK+  N E+ F  LA K++  P+L
Sbjct: 126 IKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNL 174

>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein Rhod Length = 214

Iteration: 1
 Score = 79.7 bits (195), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 53/173 (30%), Positives = 84/173 (48%), Gaps = 15/173 (8%)
Query: 14  SFKILLIGDSGVGKXXXXXXXXX-XXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQ 72
           S K++L+GD G GK                 PT+   + + L  V GK + L IWDTAGQ
Sbjct: 34  SVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNL-QVKGKPVHLHIWDTAGQ 92
Query: 73  ERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCV---------- 122
           + +  L   +Y  A  ++L +DVT   +F N+ + W  EV+ +      +          
Sbjct: 93  DDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRK 152
Query: 123 -KMLVGNKVDRDSERVVSREEGIALAKEHGSL-FLECSAKTRENVEQCFEQLA 173
            K LV NK+ R+    V+   G  +A+  G++ +LECSA+  +NV   F++ A
Sbjct: 153 DKSLV-NKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQEAA 204

>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp) Length = 219

Iteration: 1
 Score = 79.7 bits (195), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 56/180 (31%), Positives = 86/180 (47%), Gaps = 6/180 (3%)
Query: 4   SSGQSNSYDLSFKILLIGDSGVGKXXXXXXXXX-XXXXXXXPTIGVDFKIKLLTVAGKRL 62
           S+  +N    +FK++L+GD G GK                  TIGV+            +
Sbjct: 2   SAPAANGEVPTFKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEI 61
Query: 63  KLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCV 122
           K  +WDTAG E+F  L   YY  AQ  I+++DVT R T+ N+ + W +  DL    ++  
Sbjct: 62  KFDVWDTAGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPN-WHR--DLVRVCENIP 118
Query: 123 KMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIMEVPSL 182
            +L GNKVD    +V  + + I   ++    + + SAK+  N E+ F  LA K+   P L
Sbjct: 119 IVLCGNKVDVKERKV--KAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLAGNPQL 176

>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2 (Rras2) In The Gdp Bound State Length = 172

Iteration: 1
 Score = 79.0 bits (193), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 46/129 (35%), Positives = 71/129 (55%), Gaps = 2/129 (1%)
Query: 44  PTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTN 103
           PTI  D   K   +  +  +L I DTAGQE F  +   Y R  +G +LV+ VT R +F  
Sbjct: 36  PTIE-DSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTGEGFLLVFSVTDRGSFEE 94
Query: 104 LSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRE 163
           +   + +++       +   +L+GNK D D +R V++EEG  LA++    ++E SAK R 
Sbjct: 95  IYK-FQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEEGQQLARQLKVTYMEASAKIRM 153
Query: 164 NVEQCFEQL 172
           NV+Q F +L
Sbjct: 154 NVDQAFHEL 162

>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium Botulinum C3 Exoenzyme By Rala Gtpase Length = 206

Iteration: 1
 Score = 79.0 bits (193), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 84/161 (52%), Gaps = 1/161 (0%)
Query: 16  KILLIGDSGVGKXXXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERF 75
           K++++G  GVGK                     D   K + + G+ +++ I DTAGQE +
Sbjct: 16  KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY 75
Query: 76  RTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSE 135
             +  +Y+R  +G + V+ +T  E+F   +D + +++     +++   +LVGNK D + +
Sbjct: 76  AAIRDNYFRSGEGFLCVFSITEMESFAATAD-FREQILRVKEDENVPFLLVGNKSDLEDK 134
Query: 136 RVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKI 176
           R VS EE    A++    ++E SAKTR NV++ F  L  +I
Sbjct: 135 RQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 175

>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A Novel Type Of Action Of A Bacterial Exoenzyme Length = 187

Iteration: 1
 Score = 79.0 bits (193), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 84/161 (52%), Gaps = 1/161 (0%)
Query: 16  KILLIGDSGVGKXXXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERF 75
           K++++G  GVGK                     D   K + + G+ +++ I DTAGQE +
Sbjct: 20  KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY 79
Query: 76  RTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSE 135
             +  +Y+R  +G + V+ +T  E+F   +D + +++     +++   +LVGNK D + +
Sbjct: 80  AAIRDNYFRSGEGFLCVFSITEMESFAATAD-FREQILRVKEDENVPFLLVGNKSDLEDK 138
Query: 136 RVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKI 176
           R VS EE    A++    ++E SAKTR NV++ F  L  +I
Sbjct: 139 RQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 179

>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding Domain Complex Length = 175

Iteration: 1
 Score = 79.0 bits (193), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 84/161 (52%), Gaps = 1/161 (0%)
Query: 16  KILLIGDSGVGKXXXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERF 75
           K++++G  GVGK                     D   K + + G+ +++ I DTAGQE +
Sbjct: 8   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY 67
Query: 76  RTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSE 135
             +  +Y+R  +G + V+ +T  E+F   +D + +++     +++   +LVGNK D + +
Sbjct: 68  AAIRDNYFRSGEGFLCVFSITEMESFAATAD-FREQILRVKEDENVPFLLVGNKSDLEDK 126
Query: 136 RVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKI 176
           R VS EE    A++    ++E SAKTR NV++ F  L  +I
Sbjct: 127 RQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 167

>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex Length = 172

Iteration: 1
 Score = 78.6 bits (192), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 54/170 (31%), Positives = 82/170 (48%), Gaps = 6/170 (3%)
Query: 14  SFKILLIGDSGVGKXXXXXXXXX-XXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQ 72
           +FK++L+GD G GK                  TIGV+            +K  +WDTAG 
Sbjct: 5   TFKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGL 64
Query: 73  ERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDR 132
           E+F  L   YY  AQ  I+++DVT R T+ N+ + W +  DL    ++   +L GNKVD 
Sbjct: 65  EKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPN-WHR--DLVRVCENIPIVLCGNKVDV 121
Query: 133 DSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIMEVPSL 182
              +V  + + I   ++    + + SAK+  N E+ F  LA K+   P L
Sbjct: 122 KERKV--KAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLAGNPQL 169

>pdb|3ICQ|B Chain B, Karyopherin Nuclear State Length = 171

Iteration: 1
 Score = 78.2 bits (191), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 54/170 (31%), Positives = 82/170 (48%), Gaps = 6/170 (3%)
Query: 14  SFKILLIGDSGVGKXXXXXXXXX-XXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQ 72
           +FK++L+GD G GK                  TIGV+            +K  +WDTAG 
Sbjct: 4   TFKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGL 63
Query: 73  ERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDR 132
           E+F  L   YY  AQ  I+++DVT R T+ N+ + W +  DL    ++   +L GNKVD 
Sbjct: 64  EKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPN-WHR--DLVRVCENIPIVLCGNKVDV 120
Query: 133 DSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIMEVPSL 182
              +V  + + I   ++    + + SAK+  N E+ F  LA K+   P L
Sbjct: 121 KERKV--KAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLAGNPQL 168

>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two Novel Binding Sites That Are Also Present In Ras And Rap Length = 168

Iteration: 1
 Score = 78.2 bits (191), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 83/161 (51%), Gaps = 1/161 (0%)
Query: 16  KILLIGDSGVGKXXXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERF 75
           K++++G  GVGK                     D   K + + G+ +++ I DTAGQE +
Sbjct: 6   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY 65
Query: 76  RTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSE 135
             +  +Y+R  +G + V+ +T  E+F   +D + +++     +++   +LVGNK D + +
Sbjct: 66  AAIRDNYFRSGEGFLCVFSITEMESFAATAD-FREQILRVKEDENVPFLLVGNKSDLEDK 124
Query: 136 RVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKI 176
           R VS EE    A +    ++E SAKTR NV++ F  L  +I
Sbjct: 125 RQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREI 165

>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In Complex With The Active Rala Length = 175

Iteration: 1
 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 83/161 (51%), Gaps = 1/161 (0%)
Query: 16  KILLIGDSGVGKXXXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERF 75
           K++++G  GVGK                     D   K + + G+ +++ I DTAG E +
Sbjct: 8   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGLEDY 67
Query: 76  RTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSE 135
             +  +Y+R  +G + V+ +T  E+F   +D + +++     +++   +LVGNK D + +
Sbjct: 68  AAIRDNYFRSGEGFLCVFSITEMESFAATAD-FREQILRVKEDENVPFLLVGNKSDLEDK 126
Query: 136 RVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKI 176
           R VS EE    A++    ++E SAKTR NV++ F  L  +I
Sbjct: 127 RQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 167

>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8 Length = 180

Iteration: 1
 Score = 74.7 bits (182), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 53/177 (29%), Positives = 89/177 (50%), Gaps = 16/177 (9%)
Query: 16  KILLIGDSGVGKX-XXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER 74
           K + +GD  VGK                 PT+  +F   ++ V G  + L +WDTAGQE 
Sbjct: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGNTVNLGLWDTAGQED 66
Query: 75  FRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVD-RD 133
           +  L    YRGA   IL + +  + ++ N++  W  E+  Y+     +  LVG K+D RD
Sbjct: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPII--LVGTKLDLRD 124
Query: 134 SERV---------VSREEGIALAKEHGS-LFLECSAKTRENVEQCFEQLALKIMEVP 180
            ++          ++  +G  L K  GS +++ECS+KT++NV+  F+  A+K++  P
Sbjct: 125 DKQFFIDHPGAVPITTNQGEELKKLIGSPIYIECSSKTQQNVKAVFDA-AIKVVLQP 180

>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9: The First Ras Superfamily Gtpase From The Plant Kingdom Length = 212

Iteration: 1
 Score = 73.9 bits (180), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 55/190 (28%), Positives = 91/190 (47%), Gaps = 14/190 (7%)
Query: 6   GQSNSYDLSFKILLIGDSGVGKXXXXX-XXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKL 64
           G   S     K + +GD  VGK                 PT+  +F   +  V G+ + L
Sbjct: 1   GSHMSVSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANV-AVDGQIVNL 59
Query: 65  TIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKM 124
            +WDTAGQE +  L    YRGA   +L + +  + ++ N+   W  E+  ++ N   V  
Sbjct: 60  GLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIV-- 117
Query: 125 LVGNKVD--------RDSERVVSREEGIALAKEHG-SLFLECSAKTRENVEQCFEQLALK 175
           LVG K+D         D   V++  +G  L K+ G + ++ECS+KT++NV+  F+  A+K
Sbjct: 118 LVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDT-AIK 176
Query: 176 IMEVPSLLEE 185
           ++  P   +E
Sbjct: 177 VVLQPPRRKE 186

>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras And Inhibit Sos-Mediated Nucleotide Exchange Activity Length = 189

Iteration: 1
 Score = 73.9 bits (180), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 83/163 (50%), Gaps = 4/163 (2%)
Query: 15  FKILLIGDSGVGKXXXXXXXXXXX-XXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQE 73
           +K++++G  GVGK                 PTI   ++ K + + G+   L I DTAGQE
Sbjct: 5   YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 63
Query: 74  RFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRD 133
            +  +   Y R  +G + V+ +   ++F ++   + +++     ++D   +LVGNK D  
Sbjct: 64  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHH-YREQIKRVKDSEDVPMVLVGNKCDLP 122
Query: 134 SERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKI 176
           S R V  ++   LA+ +G  F+E SAKTR+ V+  F  L  +I
Sbjct: 123 S-RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 164

>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 73.6 bits (179), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 83/163 (50%), Gaps = 4/163 (2%)
Query: 15  FKILLIGDSGVGKXXXXXXXXXXX-XXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQE 73
           +K++++G  GVGK                 PTI   ++ K + + G+   L I DTAGQE
Sbjct: 5   YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 63
Query: 74  RFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRD 133
            +  +   Y R  +G + V+ +   ++F ++   + +++     ++D   +LVGNK D  
Sbjct: 64  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHH-YREQIKRVKDSEDVPMVLVGNKSDLP 122
Query: 134 SERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKI 176
           S R V  ++   LA+ +G  F+E SAKTR+ V+  F  L  +I
Sbjct: 123 S-RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 164

>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum, Pfb0500c Length = 208

Iteration: 1
 Score = 72.8 bits (177), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 40/118 (33%), Positives = 69/118 (58%), Gaps = 5/118 (4%)
Query: 61  RLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQD 120
            +K  IWDTAGQER+ ++   YYRGA   I+V+D++   T  + +  W  ++ + S   +
Sbjct: 92  NIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTL-DRAKTWVNQLKISS---N 147
Query: 121 CVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIME 178
            + +LV NK+D++  +V   E     A+++  LF++ SAKT  N++  F  LA +I +
Sbjct: 148 YIIILVANKIDKNKFQVDILEVQ-KYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIYK 204

>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex Length = 194

Iteration: 1
 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 52/190 (27%), Positives = 90/190 (47%), Gaps = 17/190 (8%)
Query: 2   GSSSGQSNSYDLSFKILLIGDSGVGKX-XXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGK 60
           G SS       L  K +++GD  VGK                 PT+   + + + TV GK
Sbjct: 6   GRSSMAHGPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSV-TVGGK 64
Query: 61  RLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQD 120
           +  L ++DTAGQE +  L    Y      ++ + V    +F N+ + W  E+  Y+ N  
Sbjct: 65  QYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVP 124
Query: 121 CVKMLVGNKVD-RDSERVVSR-----------EEGIALAKEHGS-LFLECSAKTRENVEQ 167
              +L+G ++D RD  + ++R           E+G  LAKE G+  ++ECSA T++ ++ 
Sbjct: 125 --FLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKT 182
Query: 168 CFEQLALKIM 177
            F++  + I+
Sbjct: 183 VFDEAIIAIL 192

>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166

Iteration: 1
 Score = 72.0 bits (175), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 82/163 (50%), Gaps = 4/163 (2%)
Query: 15  FKILLIGDSGVGKXXXXXXXXXXX-XXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQE 73
           +K++++G  GVGK                 PTI   ++ K + + G+   L I DTAGQE
Sbjct: 4   YKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 74  RFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRD 133
            +  +   Y R  +G + V+ +   ++F ++   + +++     + D   +LVGNK D  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCDLA 121
Query: 134 SERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKI 176
           +  V SR +   LA+ +G  ++E SAKTR+ VE  F  L  +I
Sbjct: 122 ARTVESR-QAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap Domain Of Arhgap20 Length = 180

Iteration: 1
 Score = 72.0 bits (175), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 81/169 (47%), Gaps = 17/169 (10%)
Query: 16  KILLIGDSGVGKX-XXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER 74
           K++++GD   GK                 PT+  ++ +  + V GK+++L +WDTAGQE 
Sbjct: 7   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 65
Query: 75  FRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVD-RD 133
           +  L    Y     I++ + +   ++  N+ + W  EV  +  N   +  LVGNK D R+
Sbjct: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII--LVGNKKDLRN 123
Query: 134 SERV-----------VSREEGIALAKEHGSL-FLECSAKTRENVEQCFE 170
            E             V  EEG  +A   G+  ++ECSAKT++ V + FE
Sbjct: 124 DEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 172

>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+ (Complex A) Length = 185

Iteration: 1
 Score = 71.6 bits (174), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 51/179 (28%), Positives = 84/179 (46%), Gaps = 17/179 (9%)
Query: 6   GQSNSYDLSFKILLIGDSGVGKX-XXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKL 64
           G   S  +  K++++GD   GK                 PT+  ++ +  + V GK+++L
Sbjct: 1   GPLGSAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVEL 59
Query: 65  TIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKM 124
            +WDTAGQE +  L    Y     I++ + +   ++  N+ + W  EV  +  N   +  
Sbjct: 60  ALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII-- 117
Query: 125 LVGNKVD-RDSERV-----------VSREEGIALAKEHGSL-FLECSAKTRENVEQCFE 170
           LVGNK D R+ E             V  EEG  +A   G+  ++ECSAKT++ V + FE
Sbjct: 118 LVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 176

>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH Fragment Of Pdzrhogef Length = 178

Iteration: 1
 Score = 71.6 bits (174), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 81/169 (47%), Gaps = 17/169 (10%)
Query: 16  KILLIGDSGVGKX-XXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER 74
           K++++GD   GK                 PT+  ++ +  + V GK+++L +WDTAGQE 
Sbjct: 5   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 63
Query: 75  FRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVD-RD 133
           +  L    Y     I++ + +   ++  N+ + W  EV  +  N   +  LVGNK D R+
Sbjct: 64  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII--LVGNKKDLRN 121
Query: 134 SERV-----------VSREEGIALAKEHGSL-FLECSAKTRENVEQCFE 170
            E             V  EEG  +A   G+  ++ECSAKT++ V + FE
Sbjct: 122 DEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 170

>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A Transforming And A Nontransforming Gly-12 Mutant Of P21-H-Ras Length = 166

Iteration: 1
 Score = 71.6 bits (174), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 82/163 (50%), Gaps = 4/163 (2%)
Query: 15  FKILLIGDSGVGKXXXXXXXXXXX-XXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQE 73
           +K++++G  GVGK                 PTI   ++ K + + G+   L I DTAGQE
Sbjct: 4   YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 74  RFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRD 133
            +  +   Y R  +G + V+ +   ++F ++   + +++     + D   +LVGNK D  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCDLA 121
Query: 134 SERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKI 176
           +  V SR +   LA+ +G  ++E SAKTR+ VE  F  L  +I
Sbjct: 122 ARTVESR-QAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 177

Iteration: 1
 Score = 71.6 bits (174), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 81/169 (47%), Gaps = 17/169 (10%)
Query: 16  KILLIGDSGVGKX-XXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER 74
           K++++GD   GK                 PT+  ++ +  + V GK+++L +WDTAGQE 
Sbjct: 5   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 63
Query: 75  FRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVD-RD 133
           +  L    Y     I++ + +   ++  N+ + W  EV  +  N   +  LVGNK D R+
Sbjct: 64  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII--LVGNKKDLRN 121
Query: 134 SERV-----------VSREEGIALAKEHGSL-FLECSAKTRENVEQCFE 170
            E             V  EEG  +A   G+  ++ECSAKT++ V + FE
Sbjct: 122 DEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 170

>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Length = 190

Iteration: 1
 Score = 71.6 bits (174), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 81/169 (47%), Gaps = 17/169 (10%)
Query: 16  KILLIGDSGVGKX-XXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER 74
           K++++GD   GK                 PT+  ++ +  + V GK+++L +WDTAGQE 
Sbjct: 7   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 65
Query: 75  FRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVD-RD 133
           +  L    Y     I++ + +   ++  N+ + W  EV  +  N   +  LVGNK D R+
Sbjct: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII--LVGNKKDLRN 123
Query: 134 SERV-----------VSREEGIALAKEHGSL-FLECSAKTRENVEQCFE 170
            E             V  EEG  +A   G+  ++ECSAKT++ V + FE
Sbjct: 124 DEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 172

>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex Length = 180

Iteration: 1
 Score = 71.6 bits (174), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 53/177 (29%), Positives = 86/177 (48%), Gaps = 16/177 (9%)
Query: 16  KILLIGDSGVGKX-XXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER 74
           K + +GD  VGK                 PT+  +F   ++ V G  + L +WDTAGQE 
Sbjct: 8   KCVTVGDGAVGKTCMLISYTGNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQED 66
Query: 75  FRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVD-RD 133
           +  L    YRGA   +L + +  + ++ N+   W  E+  Y+     V  LVG K+D RD
Sbjct: 67  YNRLRPLSYRGADVFLLAFSLISKASYENIHKKWLPELKHYAPGIPIV--LVGTKLDLRD 124
Query: 134 SERVVSREEGIA---------LAKEHGSL-FLECSAKTRENVEQCFEQLALKIMEVP 180
            ++ +    G A         L K  G++ +LECS+KT++NV+  F+  A+++   P
Sbjct: 125 DKQFLKDHPGAASITTAQGEELRKMIGAVRYLECSSKTQQNVKAVFDT-AIRVALRP 180

>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa And Rho-Binding Domain Of Human Rocki Length = 183

Iteration: 1
 Score = 71.6 bits (174), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 81/169 (47%), Gaps = 17/169 (10%)
Query: 16  KILLIGDSGVGKX-XXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER 74
           K++++GD   GK                 PT+  ++ +  + V GK+++L +WDTAGQE 
Sbjct: 9   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 67
Query: 75  FRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVD-RD 133
           +  L    Y     I++ + +   ++  N+ + W  EV  +  N   +  LVGNK D R+
Sbjct: 68  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII--LVGNKKDLRN 125
Query: 134 SERV-----------VSREEGIALAKEHGSL-FLECSAKTRENVEQCFE 170
            E             V  EEG  +A   G+  ++ECSAKT++ V + FE
Sbjct: 126 DEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 174

>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH DOMAINS WITH GTP- Gamma-S Activated Rhoa Length = 182

Iteration: 1
 Score = 71.6 bits (174), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 81/169 (47%), Gaps = 17/169 (10%)
Query: 16  KILLIGDSGVGKX-XXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER 74
           K++++GD   GK                 PT+  ++ +  + V GK+++L +WDTAGQE 
Sbjct: 8   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 66
Query: 75  FRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVD-RD 133
           +  L    Y     I++ + +   ++  N+ + W  EV  +  N   +  LVGNK D R+
Sbjct: 67  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII--LVGNKKDLRN 124
Query: 134 SERV-----------VSREEGIALAKEHGSL-FLECSAKTRENVEQCFE 170
            E             V  EEG  +A   G+  ++ECSAKT++ V + FE
Sbjct: 125 DEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 173

>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5 Length = 182

Iteration: 1
 Score = 71.2 bits (173), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 53/177 (29%), Positives = 88/177 (49%), Gaps = 16/177 (9%)
Query: 16  KILLIGDSGVGKX-XXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER 74
           K + +GD  VGK                 PT+  +F   ++ V G  + L +WDTAGQE 
Sbjct: 10  KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGATVNLGLWDTAGQED 68
Query: 75  FRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVD-RD 133
           +  L    YRGA   IL + +  + ++ N+S  W  E+  Y+     V  LVG K+D RD
Sbjct: 69  YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIV--LVGTKLDLRD 126
Query: 134 SERV---------VSREEGIALAKEHGS-LFLECSAKTRENVEQCFEQLALKIMEVP 180
            ++          ++  +G  L K  G+  ++ECS+K++ENV+  F+  A++++  P
Sbjct: 127 DKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDA-AIRVVLQP 182

>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap Length = 193

Iteration: 1
 Score = 71.2 bits (173), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 81/169 (47%), Gaps = 17/169 (10%)
Query: 16  KILLIGDSGVGKX-XXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER 74
           K++++GD   GK                 PT+  ++ +  + V GK+++L +WDTAGQE 
Sbjct: 7   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 65
Query: 75  FRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVD-RD 133
           +  L    Y     I++ + +   ++  N+ + W  EV  +  N   +  LVGNK D R+
Sbjct: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII--LVGNKKDLRN 123
Query: 134 SERV-----------VSREEGIALAKEHGSL-FLECSAKTRENVEQCFE 170
            E             V  EEG  +A   G+  ++ECSAKT++ V + FE
Sbjct: 124 DEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 172

>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology Domains Of Dbs In Complex With Rhoa Length = 192

Iteration: 1
 Score = 71.2 bits (173), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 81/169 (47%), Gaps = 17/169 (10%)
Query: 16  KILLIGDSGVGKX-XXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER 74
           K++++GD   GK                 PT+  ++ +  + V GK+++L +WDTAGQE 
Sbjct: 9   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 67
Query: 75  FRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVD-RD 133
           +  L    Y     I++ + +   ++  N+ + W  EV  +  N   +  LVGNK D R+
Sbjct: 68  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII--LVGNKKDLRN 125
Query: 134 SERV-----------VSREEGIALAKEHGSL-FLECSAKTRENVEQCFE 170
            E             V  EEG  +A   G+  ++ECSAKT++ V + FE
Sbjct: 126 DEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 174

>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 71.2 bits (173), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 82/163 (50%), Gaps = 4/163 (2%)
Query: 15  FKILLIGDSGVGKXXXXXXXXXXX-XXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQE 73
           +K++++G  GVGK                 PTI   ++ K + + G+   L I DTAGQE
Sbjct: 4   YKLVVVGARGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 74  RFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRD 133
            +  +   Y R  +G + V+ +   ++F ++   + +++     + D   +LVGNK D  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCDLA 121
Query: 134 SERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKI 176
           +  V SR +   LA+ +G  ++E SAKTR+ VE  F  L  +I
Sbjct: 122 ARTVESR-QAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp Length = 190

Iteration: 1
 Score = 71.2 bits (173), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 43/133 (32%), Positives = 73/133 (54%), Gaps = 3/133 (2%)
Query: 44  PTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTN 103
           PTI   ++ K + + G+   L I DTAGQE +  +   Y R  +G + V+ +   ++F +
Sbjct: 52  PTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFAD 110
Query: 104 LSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRE 163
           + +++ +++     + D   +LVGNK D  + R V  ++   LAK +G  F+E SAKTR+
Sbjct: 111 I-NLYREQIKRVKDSDDVPMVLVGNKCDLPT-RTVDTKQAHELAKSYGIPFIETSAKTRQ 168
Query: 164 NVEQCFEQLALKI 176
            VE  F  L  +I
Sbjct: 169 GVEDAFYTLVREI 181

>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And Magnesium Length = 166

Iteration: 1
 Score = 71.2 bits (173), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 81/163 (49%), Gaps = 4/163 (2%)
Query: 15  FKILLIGDSGVGKXXXXXXXXXXX-XXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQE 73
           +K++++G  GVGK                 PTI   ++ K + + G+   L I DTAGQE
Sbjct: 4   YKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 74  RFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRD 133
            +  +   Y R  +G + V+ +   ++F ++   + +++     + D   +LVGNK D  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCDLA 121
Query: 134 SERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKI 176
              V SR +   LA+ +G  ++E SAKTR+ VE  F  L  +I
Sbjct: 122 GRTVESR-QAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex Length = 193

Iteration: 1
 Score = 71.2 bits (173), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 81/169 (47%), Gaps = 17/169 (10%)
Query: 16  KILLIGDSGVGKX-XXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER 74
           K++++GD   GK                 PT+  ++ +  + V GK+++L +WDTAGQE 
Sbjct: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 65
Query: 75  FRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVD-RD 133
           +  L    Y     I++ + +   ++  N+ + W  EV  +  N   +  LVGNK D R+
Sbjct: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII--LVGNKKDLRN 123
Query: 134 SERV-----------VSREEGIALAKEHGSL-FLECSAKTRENVEQCFE 170
            E             V  EEG  +A   G+  ++ECSAKT++ V + FE
Sbjct: 124 DEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 172

>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex With Rhogdi In Its Active Gppnhp-Bound Form Length = 195

Iteration: 1
 Score = 71.2 bits (173), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 81/169 (47%), Gaps = 17/169 (10%)
Query: 16  KILLIGDSGVGKX-XXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER 74
           K++++GD   GK                 PT+  ++ +  + V GK+++L +WDTAGQE 
Sbjct: 9   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 67
Query: 75  FRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVD-RD 133
           +  L    Y     I++ + +   ++  N+ + W  EV  +  N   +  LVGNK D R+
Sbjct: 68  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII--LVGNKKDLRN 125
Query: 134 SERV-----------VSREEGIALAKEHGSL-FLECSAKTRENVEQCFE 170
            E             V  EEG  +A   G+  ++ECSAKT++ V + FE
Sbjct: 126 DEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 174

>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-Associated Rhogef In Complex With Rhoa Length = 196

Iteration: 1
 Score = 71.2 bits (173), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 81/169 (47%), Gaps = 17/169 (10%)
Query: 16  KILLIGDSGVGKX-XXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER 74
           K++++GD   GK                 PT+  ++ +  + V GK+++L +WDTAGQE 
Sbjct: 10  KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 68
Query: 75  FRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVD-RD 133
           +  L    Y     I++ + +   ++  N+ + W  EV  +  N   +  LVGNK D R+
Sbjct: 69  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII--LVGNKKDLRN 126
Query: 134 SERV-----------VSREEGIALAKEHGSL-FLECSAKTRENVEQCFE 170
            E             V  EEG  +A   G+  ++ECSAKT++ V + FE
Sbjct: 127 DEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 175

>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The Effector Domain Of The Protein Kinase PknPRK1 Length = 182

Iteration: 1
 Score = 71.2 bits (173), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 81/169 (47%), Gaps = 17/169 (10%)
Query: 16  KILLIGDSGVGKX-XXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER 74
           K++++GD   GK                 PT+  ++ +  + V GK+++L +WDTAGQE 
Sbjct: 8   KLVIVGDVACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 66
Query: 75  FRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVD-RD 133
           +  L    Y     I++ + +   ++  N+ + W  EV  +  N   +  LVGNK D R+
Sbjct: 67  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII--LVGNKKDLRN 124
Query: 134 SERV-----------VSREEGIALAKEHGSL-FLECSAKTRENVEQCFE 170
            E             V  EEG  +A   G+  ++ECSAKT++ V + FE
Sbjct: 125 DEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 173

>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex Length = 201

Iteration: 1
 Score = 70.9 bits (172), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 51/169 (30%), Positives = 79/169 (46%), Gaps = 17/169 (10%)
Query: 16  KILLIGDSGVGKX-XXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER 74
           K++++GD   GK                 PT+  ++ I  + V GK+++L +WDTAGQE 
Sbjct: 27  KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-IADIEVDGKQVELALWDTAGQED 85
Query: 75  FRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVD-RD 133
           +  L    Y     I++ + +   ++  N+ + W  EV  +  N   +  LVGNK D R 
Sbjct: 86  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFXPNVPII--LVGNKKDLRQ 143
Query: 134 SERV-----------VSREEGIALAKEHGSL-FLECSAKTRENVEQCFE 170
            E             V  EEG  +A    +  +LECSAKT+E V + FE
Sbjct: 144 DEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFE 192

>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc- Gmppnp Length = 193

Iteration: 1
 Score = 70.9 bits (172), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 51/169 (30%), Positives = 79/169 (46%), Gaps = 17/169 (10%)
Query: 16  KILLIGDSGVGKX-XXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER 74
           K++++GD   GK                 PT+  ++ I  + V GK+++L +WDTAGQE 
Sbjct: 7   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-IADIEVDGKQVELALWDTAGQED 65
Query: 75  FRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVD-RD 133
           +  L    Y     I++ + +   ++  N+ + W  EV  +  N   +  LVGNK D R 
Sbjct: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII--LVGNKKDLRQ 123
Query: 134 SERV-----------VSREEGIALAKEHGSL-FLECSAKTRENVEQCFE 170
            E             V  EEG  +A    +  +LECSAKT+E V + FE
Sbjct: 124 DEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFE 172

>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex Length = 201

Iteration: 1
 Score = 70.9 bits (172), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 51/169 (30%), Positives = 79/169 (46%), Gaps = 17/169 (10%)
Query: 16  KILLIGDSGVGKX-XXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER 74
           K++++GD   GK                 PT+  ++ I  + V GK+++L +WDTAGQE 
Sbjct: 27  KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-IADIEVDGKQVELALWDTAGQED 85
Query: 75  FRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVD-RD 133
           +  L    Y     I++ + +   ++  N+ + W  EV  +  N   +  LVGNK D R 
Sbjct: 86  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII--LVGNKKDLRQ 143
Query: 134 SERV-----------VSREEGIALAKEHGSL-FLECSAKTRENVEQCFE 170
            E             V  EEG  +A    +  +LECSAKT+E V + FE
Sbjct: 144 DEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFE 192

>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa Mutant (Q63l) Length = 184

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 48/169 (28%), Positives = 80/169 (47%), Gaps = 17/169 (10%)
Query: 16  KILLIGDSGVGKX-XXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER 74
           K++++GD   GK                 PT+  ++ +  + V GK+++L +WDTAG E 
Sbjct: 10  KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLED 68
Query: 75  FRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVD-RD 133
           +  L    Y     I++ + +   ++  N+ + W  EV  +  N   +  LVGNK D R+
Sbjct: 69  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII--LVGNKKDLRN 126
Query: 134 SERV-----------VSREEGIALAKEHGSL-FLECSAKTRENVEQCFE 170
            E             V  EEG  +A   G+  ++ECSAKT++ V + FE
Sbjct: 127 DEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 175

>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With Gdp Length = 180

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 46/169 (27%), Positives = 80/169 (47%), Gaps = 17/169 (10%)
Query: 16  KILLIGDSGVGKX-XXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER 74
           K++++GD   GK                 PT+  ++ +  + V GK+++L +WDTAGQE 
Sbjct: 7   KLVIVGDVACGKTCLLIVFSKDQFPAVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 65
Query: 75  FRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDS 134
           +       Y     I++ + +   ++  N+ + W  EV  +  N   +  LVGNK D  +
Sbjct: 66  YDRARPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII--LVGNKKDLRN 123
Query: 135 ERVVSRE------------EGIALAKEHGSL-FLECSAKTRENVEQCFE 170
           +   +RE            EG  +A   G+  ++ECSAKT++ V + FE
Sbjct: 124 DEHTARELAKMKQEPVKPAEGRDMANRIGAFGYMECSAKTKDGVREVFE 172

>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State Length = 207

Iteration: 1
 Score = 68.6 bits (166), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 55/186 (29%), Positives = 85/186 (45%), Gaps = 20/186 (10%)
Query: 2   GSSSGQSNSYDLSF---KILLIGDSGVGKX-XXXXXXXXXXXXXXXPTIGVDFKIKLLTV 57
           G   G  N Y  S    K++++GD   GK                 PT+  ++ +  + V
Sbjct: 10  GVDLGTENLYFQSMIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENY-VADIEV 68
Query: 58  AGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYST 117
            GK+++L +WDTAGQE +  L    Y     I++ + V   ++  N+ + W  EV  +  
Sbjct: 69  DGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCP 128
Query: 118 NQDCVKMLVGNKVD-RDSERV-----------VSREEGIALA-KEHGSLFLECSAKTREN 164
           N   +  LV NK D R  E V           V  ++G A+A +     +LECSAKT+E 
Sbjct: 129 NVPII--LVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEG 186
Query: 165 VEQCFE 170
           V + FE
Sbjct: 187 VREVFE 192

>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 68.6 bits (166), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 42/133 (31%), Positives = 72/133 (54%), Gaps = 3/133 (2%)
Query: 44  PTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTN 103
           PTI   ++ K + + G+   L I DTAGQE +  +   Y R  +G + V+ +   ++F +
Sbjct: 35  PTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFED 93
Query: 104 LSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRE 163
           +   + +++     ++D   +LVGNK D  S R V  ++   LA+ +G  F+E SAKTR+
Sbjct: 94  IHH-YREQIKRVKDSEDVPMVLVGNKSDLPS-RTVDTKQAQDLARSYGIPFIETSAKTRQ 151
Query: 164 NVEQCFEQLALKI 176
            V+  F  L  +I
Sbjct: 152 GVDDAFYTLVREI 164

>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 68.6 bits (166), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 42/133 (31%), Positives = 72/133 (54%), Gaps = 3/133 (2%)
Query: 44  PTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTN 103
           PTI   ++ K + + G+   L I DTAGQE +  +   Y R  +G + V+ +   ++F +
Sbjct: 35  PTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFED 93
Query: 104 LSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRE 163
           +   + +++     ++D   +LVGNK D  S R V  ++   LA+ +G  F+E SAKTR+
Sbjct: 94  IHH-YREQIKRVKDSEDVPMVLVGNKSDLPS-RTVDTKQAQDLARSYGIPFIETSAKTRQ 151
Query: 164 NVEQCFEQLALKI 176
            V+  F  L  +I
Sbjct: 152 GVDDAFYTLVREI 164

>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 189

Iteration: 1
 Score = 68.2 bits (165), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 82/168 (48%), Gaps = 18/168 (10%)
Query: 44  PTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTN 103
           PTI   ++ K + + G+   L I DTAGQE +  +   Y R  +G + V+ +   ++F +
Sbjct: 34  PTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFED 92
Query: 104 LSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRE 163
           +   + +++     + D   +LVGNK D  +  V SR +   LA+ +G  ++E SAKTR+
Sbjct: 93  IHQ-YREQIKRVKDSDDVPMVLVGNKCDLAARTVESR-QAQDLARSYGIPYIETSAKTRQ 150
Query: 164 NVEQCFEQLALKIMEVPSLLEEGSNVVKRNILKQKPENQSPPIGGCCS 211
            VE  F  L  +I +               + K  P ++S P  GC S
Sbjct: 151 GVEDAFYTLVREIRQ-------------HKLRKLNPPDESGP--GCMS 183

>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The Vav1 Exchange Factor Length = 184

Iteration: 1
 Score = 67.8 bits (164), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 48/183 (26%), Positives = 86/183 (46%), Gaps = 17/183 (9%)
Query: 14  SFKILLIGDSGVGKXXXXXXXXXXXXX-XXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQ 72
           + K +++GD  VGK                 PT+  ++   ++ V GK + L +WDTAGQ
Sbjct: 3   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQ 61
Query: 73  ERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVD- 131
           E +  L    Y      ++ + +    +F N+   W  EV  +  N   +  LVG K+D 
Sbjct: 62  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPII--LVGTKLDL 119
Query: 132 RDSERVVSR-----------EEGIALAKEHGSL-FLECSAKTRENVEQCFEQLALKIMEV 179
           RD +  + +            +G+A+AKE G++ +LECSA T+  ++  F++    ++  
Sbjct: 120 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCP 179
Query: 180 PSL 182
           P +
Sbjct: 180 PPV 182

>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With Arfaptin (P21) Length = 192

Iteration: 1
 Score = 67.8 bits (164), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 48/183 (26%), Positives = 86/183 (46%), Gaps = 17/183 (9%)
Query: 14  SFKILLIGDSGVGKXXXXXXXXXXXXX-XXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQ 72
           + K +++GD  VGK                 PT+  ++   ++ V GK + L +WDTAGQ
Sbjct: 3   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQ 61
Query: 73  ERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVD- 131
           E +  L    Y      ++ + +    +F N+   W  EV  +  N   +  LVG K+D 
Sbjct: 62  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPII--LVGTKLDL 119
Query: 132 RDSERVVSR-----------EEGIALAKEHGSL-FLECSAKTRENVEQCFEQLALKIMEV 179
           RD +  + +            +G+A+AKE G++ +LECSA T+  ++  F++    ++  
Sbjct: 120 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCP 179
Query: 180 PSL 182
           P +
Sbjct: 180 PPV 182

>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras Length = 173

Iteration: 1
 Score = 67.4 bits (163), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 42/135 (31%), Positives = 72/135 (53%), Gaps = 3/135 (2%)
Query: 44  PTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTN 103
           PTI   ++ K + + G+   L I DTAGQE +  +   Y R  +G + V+ +   ++F +
Sbjct: 41  PTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFED 99
Query: 104 LSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRE 163
           +   + +++     + D   +LVGNK D  +  V SR +   LA+ +G  ++E SAKTR+
Sbjct: 100 IHQ-YREQIKRVKDSDDVPMVLVGNKCDLAARTVESR-QAQDLARSYGIPYIETSAKTRQ 157
Query: 164 NVEQCFEQLALKIME 178
            VE  F  L  +I +
Sbjct: 158 GVEDAFYTLVREIRQ 172

>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 67.4 bits (163), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 42/133 (31%), Positives = 71/133 (53%), Gaps = 3/133 (2%)
Query: 44  PTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTN 103
           PTI   ++ K + + G+   L I DTAGQE +  +   Y R  +G + V+ +   ++F +
Sbjct: 39  PTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFED 97
Query: 104 LSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRE 163
           +   + +++     + D   +LVGNK D  +  V SR +   LA+ +G  ++E SAKTR+
Sbjct: 98  IHQ-YREQIKRVKDSDDVPMVLVGNKCDLAARTVESR-QAQDLARSYGIPYIETSAKTRQ 155
Query: 164 NVEQCFEQLALKI 176
            VE  F  L  +I
Sbjct: 156 GVEDAFYTLVREI 168

>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 67.4 bits (163), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 42/133 (31%), Positives = 71/133 (53%), Gaps = 3/133 (2%)
Query: 44  PTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTN 103
           PTI   ++ K + + G+   L I DTAGQE +  +   Y R  +G + V+ +   ++F +
Sbjct: 39  PTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFED 97
Query: 104 LSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRE 163
           +   + +++     + D   +LVGNK D  +  V SR +   LA+ +G  ++E SAKTR+
Sbjct: 98  IHQ-YREQIKRVKDSDDVPMVLVGNKCDLAARTVESR-QAQDLARSYGIPYIETSAKTRQ 155
Query: 164 NVEQCFEQLALKI 176
            VE  F  L  +I
Sbjct: 156 GVEDAFYTLVREI 168

>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue Length = 187

Iteration: 1
 Score = 67.4 bits (163), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 71/133 (53%), Gaps = 3/133 (2%)
Query: 44  PTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTN 103
           PTI   ++ K + + G+   L I DTAG E +  +   Y R  +G + V+ +   ++F +
Sbjct: 52  PTIEDSYR-KQVVIDGETCLLDILDTAGHEEYSAMRDQYMRTGEGFLCVFAINNTKSFED 110
Query: 104 LSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRE 163
           +   + +++     ++D   +LVGNK D  S R V  ++   LA+ +G  F+E SAKTR+
Sbjct: 111 IHH-YREQIKRVKDSEDVPMVLVGNKCDLPS-RTVDTKQAQDLARSYGIPFIETSAKTRQ 168
Query: 164 NVEQCFEQLALKI 176
            V+  F  L  +I
Sbjct: 169 GVDDAFYTLVREI 181

>pdb|1MH1|A Chain A, Small G-Protein Length = 186

Iteration: 1
 Score = 67.0 bits (162), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 48/183 (26%), Positives = 86/183 (46%), Gaps = 17/183 (9%)
Query: 14  SFKILLIGDSGVGKXXXXXXXXXXXXX-XXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQ 72
           + K +++GD  VGK                 PT+  ++   ++ V GK + L +WDTAGQ
Sbjct: 5   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQ 63
Query: 73  ERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVD- 131
           E +  L    Y      ++ + +    +F N+   W  EV  +  N   +  LVG K+D 
Sbjct: 64  EDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPII--LVGTKLDL 121
Query: 132 RDSERVVSR-----------EEGIALAKEHGSL-FLECSAKTRENVEQCFEQLALKIMEV 179
           RD +  + +            +G+A+AKE G++ +LECSA T+  ++  F++    ++  
Sbjct: 122 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCP 181
Query: 180 PSL 182
           P +
Sbjct: 182 PPV 184

>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase And Gtpase Activating Protein Sptp Bound To Rac1 Length = 184

Iteration: 1
 Score = 67.0 bits (162), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 48/183 (26%), Positives = 86/183 (46%), Gaps = 17/183 (9%)
Query: 14  SFKILLIGDSGVGKXXXXXXXXXXXXX-XXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQ 72
           + K +++GD  VGK                 PT+  ++   ++ V GK + L +WDTAGQ
Sbjct: 3   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQ 61
Query: 73  ERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVD- 131
           E +  L    Y      ++ + +    +F N+   W  EV  +  N   +  LVG K+D 
Sbjct: 62  EDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPII--LVGTKLDL 119
Query: 132 RDSERVVSR-----------EEGIALAKEHGSL-FLECSAKTRENVEQCFEQLALKIMEV 179
           RD +  + +            +G+A+AKE G++ +LECSA T+  ++  F++    ++  
Sbjct: 120 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCP 179
Query: 180 PSL 182
           P +
Sbjct: 180 PPV 182

>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 67.0 bits (162), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 42/133 (31%), Positives = 71/133 (53%), Gaps = 3/133 (2%)
Query: 44  PTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTN 103
           PTI   ++ K + + G+   L I DTAGQE +  +   Y R  +G + V+ +   ++F +
Sbjct: 34  PTIEESYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFED 92
Query: 104 LSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRE 163
           +   + +++     + D   +LVGNK D  +  V SR +   LA+ +G  ++E SAKTR+
Sbjct: 93  IHQ-YREQIKRVKDSDDVPMVLVGNKCDLAARTVESR-QAQDLARSYGIPYIETSAKTRQ 150
Query: 164 NVEQCFEQLALKI 176
            VE  F  L  +I
Sbjct: 151 GVEDAFYTLVREI 163

>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1 Length = 201

Iteration: 1
 Score = 67.0 bits (162), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 43/136 (31%), Positives = 70/136 (51%), Gaps = 2/136 (1%)
Query: 44  PTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTN 103
           PT+   +  K++T+      L + DTAGQ+ +  L  S+  G  G +LVY VT   +F  
Sbjct: 55  PTVENTYS-KIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQV 113
Query: 104 LSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRE 163
           +  ++ K  + +   +  V +LVGNK D   ER V   EG  LA+  G+ F+E SA+  +
Sbjct: 114 IESLYQKLHEGHGKTRVPV-VLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQ 172
Query: 164 NVEQCFEQLALKIMEV 179
             +  F ++  +I  V
Sbjct: 173 LTQGIFTKVIQEIARV 188

>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium Length = 194

Iteration: 1
 Score = 67.0 bits (162), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 48/175 (27%), Positives = 84/175 (48%), Gaps = 7/175 (4%)
Query: 1   MGSSSGQSNSYDLSFKILLIGDSGVGKX-XXXXXXXXXXXXXXXPTIGVDFKIKLLTVAG 59
           M + +G+  +   + KI+++GD  VGK                 PT+  +F   ++    
Sbjct: 10  MNTGAGKIENGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFS-HVMKYKN 68
Query: 60  KRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQ 119
           +   L +WDTAGQE +  L    Y  +  ++L + V  R +F N+S  W  E+  Y    
Sbjct: 69  EEFILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTA 128
Query: 120 DCVKMLVGNKVD--RDSERVVSREEGIALAKEHGSL-FLECSAKTRENVEQCFEQ 171
             V  LVG KVD  +D    V+++EG  L ++ G + ++E S+  +  + + FE+
Sbjct: 129 KTV--LVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEK 181

>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation Length = 192

Iteration: 1
 Score = 66.6 bits (161), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 48/183 (26%), Positives = 86/183 (46%), Gaps = 17/183 (9%)
Query: 14  SFKILLIGDSGVGKXXXXXXXXXXXXX-XXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQ 72
           + K +++GD  VGK                 PT+  ++   ++ V GK + L +WDTAGQ
Sbjct: 3   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQ 61
Query: 73  ERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVD- 131
           E +  L    Y      ++ + +    +F N+   W  EV  +  N   +  LVG K+D 
Sbjct: 62  EDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPII--LVGTKLDL 119
Query: 132 RDSERVVSR-----------EEGIALAKEHGSL-FLECSAKTRENVEQCFEQLALKIMEV 179
           RD +  + +            +G+A+AKE G++ +LECSA T+  ++  F++    ++  
Sbjct: 120 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCP 179
Query: 180 PSL 182
           P +
Sbjct: 180 PPV 182

>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1 Length = 188

Iteration: 1
 Score = 66.6 bits (161), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 48/183 (26%), Positives = 86/183 (46%), Gaps = 17/183 (9%)
Query: 14  SFKILLIGDSGVGKXXXXXXXXXXXXX-XXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQ 72
           + K +++GD  VGK                 PT+  ++   ++ V GK + L +WDTAGQ
Sbjct: 7   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQ 65
Query: 73  ERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVD- 131
           E +  L    Y      ++ + +    +F N+   W  EV  +  N   +  LVG K+D 
Sbjct: 66  EDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPII--LVGTKLDL 123
Query: 132 RDSERVVSR-----------EEGIALAKEHGSL-FLECSAKTRENVEQCFEQLALKIMEV 179
           RD +  + +            +G+A+AKE G++ +LECSA T+  ++  F++    ++  
Sbjct: 124 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCP 183
Query: 180 PSL 182
           P +
Sbjct: 184 PPV 186

>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of Ras Length = 166

Iteration: 1
 Score = 66.6 bits (161), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 42/133 (31%), Positives = 71/133 (53%), Gaps = 3/133 (2%)
Query: 44  PTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTN 103
           PTI   ++ K + + G+   L I DTAGQE +  +   Y R  +G + V+ +   ++F +
Sbjct: 34  PTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFED 92
Query: 104 LSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRE 163
           +   + +++     + D   +LVGNK D  +  V SR +   LA+ +G  ++E SAKTR+
Sbjct: 93  IHQ-YREQIKRVKDSDDVPMVLVGNKCDLAARTVESR-QAQDLARSYGIPYIETSAKTRQ 150
Query: 164 NVEQCFEQLALKI 176
            VE  F  L  +I
Sbjct: 151 GVEDAFYTLVREI 163

>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase Length = 166

Iteration: 1
 Score = 66.6 bits (161), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 42/133 (31%), Positives = 71/133 (53%), Gaps = 3/133 (2%)
Query: 44  PTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTN 103
           PTI   ++ K + + G+   L I DTAGQE +  +   Y R  +G + V+ +   ++F +
Sbjct: 34  PTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFED 92
Query: 104 LSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRE 163
           +   + +++     + D   +LVGNK D  +  V SR +   LA+ +G  ++E SAKTR+
Sbjct: 93  IHQ-YREQIKRVKDSDDVPMVLVGNKCDLAARTVESR-QAQDLARSYGIPYIETSAKTRQ 150
Query: 164 NVEQCFEQLALKI 176
            VE  F  L  +I
Sbjct: 151 GVEDAFYTLVREI 163

>pdb|1WQ1|R Chain R, Ras-Rasgap Complex Length = 166

Iteration: 1
 Score = 66.6 bits (161), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 42/133 (31%), Positives = 71/133 (53%), Gaps = 3/133 (2%)
Query: 44  PTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTN 103
           PTI   ++ K + + G+   L I DTAGQE +  +   Y R  +G + V+ +   ++F +
Sbjct: 34  PTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFED 92
Query: 104 LSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRE 163
           +   + +++     + D   +LVGNK D  +  V SR +   LA+ +G  ++E SAKTR+
Sbjct: 93  IHQ-YREQIKRVKDSDDVPMVLVGNKCDLAARTVESR-QAQDLARSYGIPYIETSAKTRQ 150
Query: 164 NVEQCFEQLALKI 176
            VE  F  L  +I
Sbjct: 151 GVEDAFYTLVREI 163

>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166

Iteration: 1
 Score = 66.6 bits (161), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 42/133 (31%), Positives = 71/133 (53%), Gaps = 3/133 (2%)
Query: 44  PTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTN 103
           PTI   ++ K + + G+   L I DTAGQE +  +   Y R  +G + V+ +   ++F +
Sbjct: 34  PTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFED 92
Query: 104 LSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRE 163
           +   + +++     + D   +LVGNK D  +  V SR +   LA+ +G  ++E SAKTR+
Sbjct: 93  IHQ-YREQIKRVKDSDDVPMVLVGNKCDLAARTVESR-QAQDLARSYGIPYIETSAKTRQ 150
Query: 164 NVEQCFEQLALKI 176
            VE  F  L  +I
Sbjct: 151 GVEDAFYTLVREI 163

>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant Length = 204

Iteration: 1
 Score = 66.6 bits (161), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 82/172 (47%), Gaps = 17/172 (9%)
Query: 14  SFKILLIGDSGVGKX-XXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQ 72
           + K +++GD  VGK                 PT+  ++   ++ V GK + L +WDTAGQ
Sbjct: 30  AIKCVVVGDGAVGKTCLLISYTTNALPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQ 88
Query: 73  ERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVD- 131
           E +  L    Y      ++ + +    +F N+   W  EV  +  N   +  LVG K+D 
Sbjct: 89  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPII--LVGTKLDL 146
Query: 132 RDSERVVSR-----------EEGIALAKEHGSL-FLECSAKTRENVEQCFEQ 171
           RD +  + +            +G+A+AKE G++ +LECSA T+  ++  F++
Sbjct: 147 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 198

>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF Length = 166

Iteration: 1
 Score = 66.6 bits (161), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 42/133 (31%), Positives = 71/133 (53%), Gaps = 3/133 (2%)
Query: 44  PTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTN 103
           PTI   ++ K + + G+   L I DTAGQE +  +   Y R  +G + V+ +   ++F +
Sbjct: 34  PTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDEYMRTGEGFLCVFAINNTKSFED 92
Query: 104 LSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRE 163
           +   + +++     + D   +LVGNK D  +  V SR +   LA+ +G  ++E SAKTR+
Sbjct: 93  IHQ-YREQIKRVKDSDDVPMVLVGNKCDLAARTVESR-QAQDLARSYGIPYIETSAKTRQ 150
Query: 164 NVEQCFEQLALKI 176
            VE  F  L  +I
Sbjct: 151 GVEDAFYTLVREI 163

>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex With Rac1 (T17n Mutant) Length = 184

Iteration: 1
 Score = 66.6 bits (161), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 51/182 (28%), Positives = 86/182 (47%), Gaps = 19/182 (10%)
Query: 4   SSGQSNSYDLSFKILLIGDSGVGKX-XXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRL 62
           SSG S     + K +++GD  VGK                 PT+  ++   ++ V GK +
Sbjct: 2   SSGSSGMQ--AIKCVVVGDGAVGKNCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPV 58
Query: 63  KLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCV 122
            L +WDTAGQE +  L    Y      ++ + +    +F N+   W  EV  +  N   +
Sbjct: 59  NLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPII 118
Query: 123 KMLVGNKVD-RDSERVVSR-----------EEGIALAKEHGSL-FLECSAKTRENVEQCF 169
             LVG K+D RD +  + +            +G+A+AKE G++ +LECSA T+  ++  F
Sbjct: 119 --LVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 176
Query: 170 EQ 171
           ++
Sbjct: 177 DE 178

>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of The Pseudomonas Aeruginosa Exos Toxin And Human Rac Length = 176

Iteration: 1
 Score = 66.6 bits (161), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 82/172 (47%), Gaps = 17/172 (9%)
Query: 14  SFKILLIGDSGVGKXXXXXXXXXXXXX-XXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQ 72
           + K +++GD  VGK                 PT+  ++   ++ V GK + L +WDTAGQ
Sbjct: 3   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQ 61
Query: 73  ERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVD- 131
           E +  L    Y      ++ + +    +F N+   W  EV  +  N   +  LVG K+D 
Sbjct: 62  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPII--LVGTKLDL 119
Query: 132 RDSERVVSR-----------EEGIALAKEHGSL-FLECSAKTRENVEQCFEQ 171
           RD +  + +            +G+A+AKE G++ +LECSA T+  ++  F++
Sbjct: 120 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 171

>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With The Ras-interacting Domain Of Ralgds Length = 167

Iteration: 1
 Score = 66.6 bits (161), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 42/133 (31%), Positives = 71/133 (53%), Gaps = 3/133 (2%)
Query: 44  PTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTN 103
           PTI   ++ K + + G+   L I DTAGQE +  +   Y R  +G + V+ +   ++F +
Sbjct: 34  PTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFED 92
Query: 104 LSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRE 163
           +   + +++     + D   +LVGNK D  +  V SR +   LA+ +G  ++E SAKTR+
Sbjct: 93  IHQ-YREQIKRVKDSDDVPMVLVGNKCDLAARTVESR-QAQDLARSYGIPYIETSAKTRQ 150
Query: 164 NVEQCFEQLALKI 176
            VE  F  L  +I
Sbjct: 151 GVEDAFYTLVREI 163

>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras Length = 166

Iteration: 1
 Score = 66.6 bits (161), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 42/133 (31%), Positives = 71/133 (53%), Gaps = 3/133 (2%)
Query: 44  PTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTN 103
           PTI   ++ K + + G+   L I DTAGQE +  +   Y R  +G + V+ +   ++F +
Sbjct: 34  PTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFED 92
Query: 104 LSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRE 163
           +   + +++     + D   +LVGNK D  +  V SR +   LA+ +G  ++E SAKTR+
Sbjct: 93  IHQ-YREQIKRVKDSDDVPMVLVGNKCDLAARTVESR-QAQDLARSYGIPYIETSAKTRQ 150
Query: 164 NVEQCFEQLALKI 176
            VE  F  L  +I
Sbjct: 151 GVEDAFYTLVREI 163

>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1 Length = 204

Iteration: 1
 Score = 66.6 bits (161), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 82/172 (47%), Gaps = 17/172 (9%)
Query: 14  SFKILLIGDSGVGKX-XXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQ 72
           + K +++GD  VGK                 PT+  ++   ++ V GK + L +WDTAGQ
Sbjct: 30  AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQ 88
Query: 73  ERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVD- 131
           E +  L    Y      ++ + +    +F N+   W  EV  +  N   +  LVG K+D 
Sbjct: 89  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPII--LVGTKLDL 146
Query: 132 RDSERVVSR-----------EEGIALAKEHGSL-FLECSAKTRENVEQCFEQ 171
           RD +  + +            +G+A+AKE G++ +LECSA T+  ++  F++
Sbjct: 147 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 198

>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta 2 Length = 178

Iteration: 1
 Score = 66.6 bits (161), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 82/172 (47%), Gaps = 17/172 (9%)
Query: 14  SFKILLIGDSGVGKXXXXXXXXXXXXX-XXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQ 72
           + K +++GD  VGK                 PT+  ++   ++ V GK + L +WDTAGQ
Sbjct: 3   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQ 61
Query: 73  ERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVD- 131
           E +  L    Y      ++ + +    +F N+   W  EV  +  N   +  LVG K+D 
Sbjct: 62  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPII--LVGTKLDL 119
Query: 132 RDSERVVSR-----------EEGIALAKEHGSL-FLECSAKTRENVEQCFEQ 171
           RD +  + +            +G+A+AKE G++ +LECSA T+  ++  F++
Sbjct: 120 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 171

>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 171

Iteration: 1
 Score = 66.6 bits (161), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 42/133 (31%), Positives = 71/133 (53%), Gaps = 3/133 (2%)
Query: 44  PTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTN 103
           PTI   ++ K + + G+   L I DTAGQE +  +   Y R  +G + V+ +   ++F +
Sbjct: 34  PTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFED 92
Query: 104 LSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRE 163
           +   + +++     + D   +LVGNK D  +  V SR +   LA+ +G  ++E SAKTR+
Sbjct: 93  IHQ-YREQIKRVKDSDDVPMVLVGNKCDLAARTVESR-QAQDLARSYGIPYIETSAKTRQ 150
Query: 164 NVEQCFEQLALKI 176
            VE  F  L  +I
Sbjct: 151 GVEDAFYTLVREI 163

>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The Catalytic Domains Of Normal Ras Protein And An Oncogenic Mutant Complexed With Gsp Length = 171

Iteration: 1
 Score = 66.6 bits (161), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 42/133 (31%), Positives = 71/133 (53%), Gaps = 3/133 (2%)
Query: 44  PTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTN 103
           PTI   ++ K + + G+   L I DTAGQE +  +   Y R  +G + V+ +   ++F +
Sbjct: 34  PTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFED 92
Query: 104 LSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRE 163
           +   + +++     + D   +LVGNK D  +  V SR +   LA+ +G  ++E SAKTR+
Sbjct: 93  IHQ-YREQIKRVKDSDDVPMVLVGNKCDLAARTVESR-QAQDLARSYGIPYIETSAKTRQ 150
Query: 164 NVEQCFEQLALKI 176
            VE  F  L  +I
Sbjct: 151 GVEDAFYTLVREI 163

>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras P21 In Complex With Gppnhp Length = 166

Iteration: 1
 Score = 66.6 bits (161), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 42/133 (31%), Positives = 71/133 (53%), Gaps = 3/133 (2%)
Query: 44  PTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTN 103
           PTI   ++ K + + G+   L I DTAGQE +  +   Y R  +G + V+ +   ++F +
Sbjct: 34  PTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFED 92
Query: 104 LSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRE 163
           +   + +++     + D   +LVGNK D  +  V SR +   LA+ +G  ++E SAKTR+
Sbjct: 93  IHQ-YREQIKRVKDSDDVPMVLVGNKSDLAARTVESR-QAQDLARSYGIPYIETSAKTRQ 150
Query: 164 NVEQCFEQLALKI 176
            VE  F  L  +I
Sbjct: 151 GVEDAFYTLVREI 163

>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1 In Complex With Rac1 Length = 184

Iteration: 1
 Score = 66.2 bits (160), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 82/172 (47%), Gaps = 17/172 (9%)
Query: 14  SFKILLIGDSGVGKXXXXXXXXXXXXX-XXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQ 72
           + K +++GD  VGK                 PT+  ++   ++ V GK + L +WDTAGQ
Sbjct: 3   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQ 61
Query: 73  ERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVD- 131
           E +  L    Y      ++ + +    +F N+   W  EV  +  N   +  LVG K+D 
Sbjct: 62  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPII--LVGTKLDL 119
Query: 132 RDSERVVSR-----------EEGIALAKEHGSL-FLECSAKTRENVEQCFEQ 171
           RD +  + +            +G+A+AKE G++ +LECSA T+  ++  F++
Sbjct: 120 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 171

>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine Nucleotide Exchange Region Of Tiam1 Length = 177

Iteration: 1
 Score = 66.2 bits (160), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 82/172 (47%), Gaps = 17/172 (9%)
Query: 14  SFKILLIGDSGVGKXXXXXXXXXXXXX-XXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQ 72
           + K +++GD  VGK                 PT+  ++   ++ V GK + L +WDTAGQ
Sbjct: 3   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQ 61
Query: 73  ERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVD- 131
           E +  L    Y      ++ + +    +F N+   W  EV  +  N   +  LVG K+D 
Sbjct: 62  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPII--LVGTKLDL 119
Query: 132 RDSERVVSR-----------EEGIALAKEHGSL-FLECSAKTRENVEQCFEQ 171
           RD +  + +            +G+A+AKE G++ +LECSA T+  ++  F++
Sbjct: 120 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 171

>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With Gtp Length = 167

Iteration: 1
 Score = 66.2 bits (160), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 50/130 (38%), Positives = 76/130 (58%), Gaps = 2/130 (1%)
Query: 44  PTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTN 103
           PTI  DF  K + V      L I DTAG E+F ++   Y +  QG ILVY +  +++F +
Sbjct: 34  PTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQD 92
Query: 104 LSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRE 163
           +  +  + + +    +  V +LVGNKVD +SER VS  EG ALA+E G  F+E SAK++ 
Sbjct: 93  IKPMRDQIIRVKRYEKVPV-ILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKT 151
Query: 164 NVEQCFEQLA 173
            V++ F ++ 
Sbjct: 152 MVDELFAEIV 161

>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1. Length = 196

Iteration: 1
 Score = 66.2 bits (160), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 82/172 (47%), Gaps = 17/172 (9%)
Query: 14  SFKILLIGDSGVGKXXXXXXXXXXXXX-XXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQ 72
           + K +++GD  VGK                 PT+  ++   ++ V GK + L +WDTAGQ
Sbjct: 22  AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQ 80
Query: 73  ERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVD- 131
           E +  L    Y      ++ + +    +F N+   W  EV  +  N   +  LVG K+D 
Sbjct: 81  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPII--LVGTKLDL 138
Query: 132 RDSERVVSR-----------EEGIALAKEHGSL-FLECSAKTRENVEQCFEQ 171
           RD +  + +            +G+A+AKE G++ +LECSA T+  ++  F++
Sbjct: 139 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 190

>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant Length = 187

Iteration: 1
 Score = 66.2 bits (160), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 82/172 (47%), Gaps = 17/172 (9%)
Query: 14  SFKILLIGDSGVGKX-XXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQ 72
           + K +++GD  VGK                 PT+  ++   ++ V GK + L +WDTAGQ
Sbjct: 13  AIKCVVVGDGAVGKTCLLISYTTNAFSGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQ 71
Query: 73  ERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVD- 131
           E +  L    Y      ++ + +    +F N+   W  EV  +  N   +  LVG K+D 
Sbjct: 72  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPII--LVGTKLDL 129
Query: 132 RDSERVVSR-----------EEGIALAKEHGSL-FLECSAKTRENVEQCFEQ 171
           RD +  + +            +G+A+AKE G++ +LECSA T+  ++  F++
Sbjct: 130 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 181

>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By Isoleucine Length = 166

Iteration: 1
 Score = 66.2 bits (160), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 42/133 (31%), Positives = 71/133 (53%), Gaps = 3/133 (2%)
Query: 44  PTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTN 103
           PTI   ++ K + + G+   L I DTAGQE +  +   Y R  +G + V+ +   ++F +
Sbjct: 34  PTIEDSYR-KQVVIDGEICLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFED 92
Query: 104 LSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRE 163
           +   + +++     + D   +LVGNK D  +  V SR +   LA+ +G  ++E SAKTR+
Sbjct: 93  IHQ-YREQIKRVKDSDDVPMVLVGNKCDLAARTVESR-QAQDLARSYGIPYIETSAKTRQ 150
Query: 164 NVEQCFEQLALKI 176
            VE  F  L  +I
Sbjct: 151 GVEDAFYTLVREI 163

>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To Ehrho1-Gtpgammas Length = 188

Iteration: 1
 Score = 66.2 bits (160), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 48/175 (27%), Positives = 84/175 (48%), Gaps = 7/175 (4%)
Query: 1   MGSSSGQSNSYDLSFKILLIGDSGVGKX-XXXXXXXXXXXXXXXPTIGVDFKIKLLTVAG 59
           M + +G+  +   + KI+++GD  VGK                 PT+  +F   ++    
Sbjct: 9   MNTGAGKIENGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFS-HVMKYKN 67
Query: 60  KRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQ 119
           +   L +WDTAGQE +  L    Y  +  ++L + V  R +F N+S  W  E+  Y    
Sbjct: 68  EEFILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTA 127
Query: 120 DCVKMLVGNKVD--RDSERVVSREEGIALAKEHGSL-FLECSAKTRENVEQCFEQ 171
             V  LVG KVD  +D    V+++EG  L ++ G + ++E S+  +  + + FE+
Sbjct: 128 KTV--LVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEK 180

>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp Length = 172

Iteration: 1
 Score = 65.9 bits (159), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 71/133 (53%), Gaps = 3/133 (2%)
Query: 44  PTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTN 103
           P+I   ++ K + + G+   L I DTAGQE +  +   Y R  +G + V+ +   ++F +
Sbjct: 40  PSIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFED 98
Query: 104 LSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRE 163
           +   + +++     + D   +LVGNK D  +  V SR +   LA+ +G  ++E SAKTR+
Sbjct: 99  IHQ-YREQIKRVKDSDDVPMVLVGNKCDLAARTVESR-QAQDLARSYGIPYIETSAKTRQ 156
Query: 164 NVEQCFEQLALKI 176
            VE  F  L  +I
Sbjct: 157 GVEDAFYTLVREI 169

>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State Length = 196

Iteration: 1
 Score = 65.9 bits (159), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 54/172 (31%), Positives = 82/172 (47%), Gaps = 5/172 (2%)
Query: 7   QSNSYDLSFKILLIGDSGVGKXXXXXXXXXXXXX-XXXPTIGVDFKIKLLTVAGKRLKLT 65
           QS +     K+ + G +GVGK                 PT+   ++ +  T+  + + + 
Sbjct: 21  QSMAKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQA-TIDDEVVSME 79
Query: 66  IWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKML 125
           I DTAGQE        + R  +G +LVYD+T R +F  +  +    +D     ++   +L
Sbjct: 80  ILDTAGQED-TIQREGHMRWGEGFVLVYDITDRGSFEEVLPL-KNILDEIKKPKNVTLIL 137
Query: 126 VGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRE-NVEQCFEQLALKI 176
           VGNK D D  R VS EEG  LA E    F ECSA T E N+ + F +L  ++
Sbjct: 138 VGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREV 189

>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of Gpp(Nh)p. Length = 180

Iteration: 1
 Score = 65.9 bits (159), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 82/172 (47%), Gaps = 17/172 (9%)
Query: 14  SFKILLIGDSGVGKX-XXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQ 72
           + K +++GD  VGK                 PT+  ++   ++ V GK + L +WDTAGQ
Sbjct: 4   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQ 62
Query: 73  ERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVD- 131
           E +  L    Y      ++ + +    +F N+   W  EV  +  +     +LVG K+D 
Sbjct: 63  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPI--LLVGTKLDL 120
Query: 132 RDSERVVSR-----------EEGIALAKEHGSL-FLECSAKTRENVEQCFEQ 171
           RD +  + R            +G+A+A+E GS+ +LECSA T+  ++  F++
Sbjct: 121 RDDKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDE 172

>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With Gdp And Chloride Length = 179

Iteration: 1
 Score = 65.9 bits (159), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 82/172 (47%), Gaps = 17/172 (9%)
Query: 14  SFKILLIGDSGVGKXXXXXXXXXXXXX-XXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQ 72
           + K +++GD  VGK                 PT+  ++   ++ V GK + L +WDTAGQ
Sbjct: 4   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQ 62
Query: 73  ERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVD- 131
           E +  L    Y      ++ + +    +F N+   W  EV  +  +     +LVG K+D 
Sbjct: 63  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPI--LLVGTKLDL 120
Query: 132 RDSERVVSR-----------EEGIALAKEHGSL-FLECSAKTRENVEQCFEQ 171
           RD +  + R            +G+A+A+E GS+ +LECSA T+  ++  F++
Sbjct: 121 RDDKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDE 172

>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166

Iteration: 1
 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 71/133 (53%), Gaps = 3/133 (2%)
Query: 44  PTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTN 103
           PTI   ++ K + + G+   L I DTAGQE +  +   Y R  +G + V+ +   ++F +
Sbjct: 34  PTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFED 92
Query: 104 LSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRE 163
           +   + +++     + D   +LVGN+ D  +  V SR +   LA+ +G  ++E SAKTR+
Sbjct: 93  IHQ-YREQIKRVKDSDDVPMVLVGNRCDLAARTVESR-QAQDLARSYGIPYIETSAKTRQ 150
Query: 164 NVEQCFEQLALKI 176
            VE  F  L  +I
Sbjct: 151 GVEDAFYTLVREI 163

>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166

Iteration: 1
 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 41/129 (31%), Positives = 69/129 (53%), Gaps = 3/129 (2%)
Query: 44  PTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTN 103
           PTI   ++ K + + G+   L I DTAGQE +  +   Y R  +G + V+ +   ++F +
Sbjct: 34  PTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFED 92
Query: 104 LSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRE 163
           +   + +++     + D   +LVGNK D  +  V SR +   LA+ +G  ++E SAKTR+
Sbjct: 93  IHQ-YREQIKRVKDSDDVPMVLVGNKCDLAARTVESR-QAQDLARSYGIPYIETSAKTRQ 150
Query: 164 NVEQCFEQL 172
            VE  F  L
Sbjct: 151 GVEDAFYTL 159

>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp Length = 192

Iteration: 1
 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 82/172 (47%), Gaps = 17/172 (9%)
Query: 14  SFKILLIGDSGVGKXXXXXXXXXXXXX-XXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQ 72
           + K +++GD  VGK                 PT+  ++   ++ V GK + L +WDTAGQ
Sbjct: 3   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQ 61
Query: 73  ERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVD- 131
           E +  L    Y      ++ + +    +F N+   W  EV  +  +     +LVG K+D 
Sbjct: 62  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPI--LLVGTKLDL 119
Query: 132 RDSERVVSR-----------EEGIALAKEHGSL-FLECSAKTRENVEQCFEQ 171
           RD +  + R            +G+A+A+E GS+ +LECSA T+  ++  F++
Sbjct: 120 RDDKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDE 171

>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser (T35s) Complexed With Guanosine-5'-[b,G-Imido] Triphosphate Length = 166

Iteration: 1
 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 71/133 (53%), Gaps = 3/133 (2%)
Query: 44  PTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTN 103
           P+I   ++ K + + G+   L I DTAGQE +  +   Y R  +G + V+ +   ++F +
Sbjct: 34  PSIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFED 92
Query: 104 LSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRE 163
           +   + +++     + D   +LVGNK D  +  V SR +   LA+ +G  ++E SAKTR+
Sbjct: 93  IHQ-YREQIKRVKDSDDVPMVLVGNKCDLAARTVESR-QAQDLARSYGIPYIETSAKTRQ 150
Query: 164 NVEQCFEQLALKI 176
            VE  F  L  +I
Sbjct: 151 GVEDAFYTLVREI 163

>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form Length = 166

Iteration: 1
 Score = 65.1 bits (157), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 70/133 (52%), Gaps = 3/133 (2%)
Query: 44  PTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTN 103
           PTI   ++ K + + G+   L I DT GQE +  +   Y R  +G + V+ +   ++F +
Sbjct: 34  PTIEDSYR-KQVVIDGETCLLDILDTGGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFED 92
Query: 104 LSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRE 163
           +   + +++     + D   +LVGNK D  +  V SR +   LA+ +G  ++E SAKTR+
Sbjct: 93  IHQ-YREQIKRVKDSDDVPMVLVGNKCDLAARTVESR-QAQDLARSYGIPYIETSAKTRQ 150
Query: 164 NVEQCFEQLALKI 176
            VE  F  L  +I
Sbjct: 151 GVEDAFYTLVREI 163

>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 65.1 bits (157), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 70/133 (52%), Gaps = 3/133 (2%)
Query: 44  PTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTN 103
           PTI   ++ K + + G+   L I DTAG E +  +   Y R  +G + V+ +   ++F +
Sbjct: 34  PTIEDSYR-KQVVIDGETCLLDILDTAGHEEYSAMRDQYMRTGEGFLCVFAINNTKSFED 92
Query: 104 LSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRE 163
           +   + +++     + D   +LVGNK D  +  V SR +   LA+ +G  ++E SAKTR+
Sbjct: 93  IHQ-YREQIKRVKDSDDVPMVLVGNKCDLAARTVESR-QAQDLARSYGIPYIETSAKTRQ 150
Query: 164 NVEQCFEQLALKI 176
            VE  F  L  +I
Sbjct: 151 GVEDAFYTLVREI 163

>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp Length = 166

Iteration: 1
 Score = 65.1 bits (157), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 71/133 (53%), Gaps = 3/133 (2%)
Query: 44  PTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTN 103
           PTI   ++ K + + G+   L I DTAG+E +  +   Y R  +G + V+ +   ++F +
Sbjct: 34  PTIEDSYR-KQVVIDGETCLLDILDTAGKEEYSAMRDQYMRTGEGFLCVFAINNTKSFED 92
Query: 104 LSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRE 163
           +   + +++     + D   +LVGNK D  +  V SR +   LA+ +G  ++E SAKTR+
Sbjct: 93  IHQ-YREQIKRVKDSDDVPMVLVGNKCDLAARTVESR-QAQDLARSYGIPYIETSAKTRQ 150
Query: 164 NVEQCFEQLALKI 176
            VE  F  L  +I
Sbjct: 151 GVEDAFYTLVREI 163

>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX Length = 192

Iteration: 1
 Score = 64.7 bits (156), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 47/183 (25%), Positives = 85/183 (46%), Gaps = 17/183 (9%)
Query: 14  SFKILLIGDSGVGKXXXXXXXXXXXXX-XXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQ 72
           + K +++GD  VGK                 PT+  ++   ++ V GK + L +WDTAG 
Sbjct: 3   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGL 61
Query: 73  ERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVD- 131
           E +  L    Y      ++ + +    +F N+   W  EV  +  N   +  LVG K+D 
Sbjct: 62  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPII--LVGTKLDL 119
Query: 132 RDSERVVSR-----------EEGIALAKEHGSL-FLECSAKTRENVEQCFEQLALKIMEV 179
           RD +  + +            +G+A+AKE G++ +LECSA T+  ++  F++    ++  
Sbjct: 120 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCP 179
Query: 180 PSL 182
           P +
Sbjct: 180 PPV 182

>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 64.7 bits (156), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 70/133 (52%), Gaps = 3/133 (2%)
Query: 44  PTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTN 103
           PTI   ++ K + + G+   L I DT GQE +  +   Y R  +G + V+ +   ++F +
Sbjct: 34  PTIEDSYR-KQVVIDGETCLLDILDTTGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFED 92
Query: 104 LSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRE 163
           +   + +++     + D   +LVGNK D  +  V SR +   LA+ +G  ++E SAKTR+
Sbjct: 93  IHQ-YREQIKRVKDSDDVPMVLVGNKCDLAARTVESR-QAQDLARSYGIPYIETSAKTRQ 150
Query: 164 NVEQCFEQLALKI 176
            VE  F  L  +I
Sbjct: 151 GVEDAFYTLVREI 163

>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a Mutant Length = 166

Iteration: 1
 Score = 64.7 bits (156), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 70/133 (52%), Gaps = 3/133 (2%)
Query: 44  PTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTN 103
           PTI   ++ K + + G+   L I DTA QE +  +   Y R  +G + V+ +   ++F +
Sbjct: 34  PTIEDSYR-KQVVIDGETCLLDILDTAAQEEYSAMRDQYMRTGEGFLCVFAINNTKSFED 92
Query: 104 LSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRE 163
           +   + +++     + D   +LVGNK D  +  V SR +   LA+ +G  ++E SAKTR+
Sbjct: 93  IHQ-YREQIKRVKDSDDVPMVLVGNKXDLAARTVESR-QAQDLARSYGIPYIETSAKTRQ 150
Query: 164 NVEQCFEQLALKI 176
            VE  F  L  +I
Sbjct: 151 GVEDAFYTLVREI 163

>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With Arfaptin Length = 192

Iteration: 1
 Score = 64.7 bits (156), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 47/183 (25%), Positives = 85/183 (46%), Gaps = 17/183 (9%)
Query: 14  SFKILLIGDSGVGKXXXXXXXXXXXXX-XXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQ 72
           + K +++GD  VGK                 PT+  ++   ++ V GK + L +WDTAG 
Sbjct: 3   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGL 61
Query: 73  ERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVD- 131
           E +  L    Y      ++ + +    +F N+   W  EV  +  N   +  LVG K+D 
Sbjct: 62  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPII--LVGTKLDL 119
Query: 132 RDSERVVSR-----------EEGIALAKEHGSL-FLECSAKTRENVEQCFEQLALKIMEV 179
           RD +  + +            +G+A+AKE G++ +LECSA T+  ++  F++    ++  
Sbjct: 120 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCP 179
Query: 180 PSL 182
           P +
Sbjct: 180 PPV 182

>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant Length = 167

Iteration: 1
 Score = 64.3 bits (155), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 70/133 (52%), Gaps = 3/133 (2%)
Query: 44  PTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTN 103
           PTI   ++ K + + G+   L I DTA QE +  +   Y R  +G + V+ +   ++F +
Sbjct: 34  PTIEDSYR-KQVVIDGETCLLDILDTAAQEEYSAMRDQYMRTGEGFLCVFAINNTKSFED 92
Query: 104 LSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRE 163
           +   + +++     + D   +LVGNK D  +  V SR +   LA+ +G  ++E SAKTR+
Sbjct: 93  IHQ-YREQIKRVKDSDDVPMVLVGNKXDLAARTVESR-QAQDLARSYGIPYIETSAKTRQ 150
Query: 164 NVEQCFEQLALKI 176
            VE  F  L  +I
Sbjct: 151 GVEDAFYTLVREI 163

>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of The Ras-specific Nucleotide Exchange Factor Sos Length = 166

Iteration: 1
 Score = 64.3 bits (155), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 42/133 (31%), Positives = 70/133 (52%), Gaps = 3/133 (2%)
Query: 44  PTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTN 103
           PTI   ++ K + + G+   L I DTAGQE    +   Y R  +G + V+ +   ++F +
Sbjct: 34  PTIEDSYR-KQVVIDGETCLLDILDTAGQEEASAMRDQYMRTGEGFLCVFAINNTKSFED 92
Query: 104 LSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRE 163
           +   + +++     + D   +LVGNK D  +  V SR +   LA+ +G  ++E SAKTR+
Sbjct: 93  IHQ-YREQIKRVKDSDDVPMVLVGNKCDLAARTVESR-QAQDLARSYGIPYIETSAKTRQ 150
Query: 164 NVEQCFEQLALKI 176
            VE  F  L  +I
Sbjct: 151 GVEDAFYTLVREI 163

>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 64.3 bits (155), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 70/133 (52%), Gaps = 3/133 (2%)
Query: 44  PTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTN 103
           PTI   ++ K + + G+   L I DTAG E +  +   Y R  +G + V+ +   ++F +
Sbjct: 39  PTIEDSYR-KQVVIDGETCLLDILDTAGLEEYSAMRDQYMRTGEGFLCVFAINNTKSFED 97
Query: 104 LSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRE 163
           +   + +++     + D   +LVGNK D  +  V SR +   LA+ +G  ++E SAKTR+
Sbjct: 98  IHQ-YREQIKRVKDSDDVPMVLVGNKCDLAARTVESR-QAQDLARSYGIPYIETSAKTRQ 155
Query: 164 NVEQCFEQLALKI 176
            VE  F  L  +I
Sbjct: 156 GVEDAFYTLVREI 168

>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g Length = 166

Iteration: 1
 Score = 63.9 bits (154), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 70/133 (52%), Gaps = 3/133 (2%)
Query: 44  PTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTN 103
           PTI   ++ K + + G+   L I DTAG E +  +   Y R  +G + V+ +   ++F +
Sbjct: 34  PTIEDSYR-KQVVIDGETXLLDILDTAGGEEYSAMRDQYMRTGEGFLCVFAINNTKSFED 92
Query: 104 LSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRE 163
           +   + +++     + D   +LVGNK D  +  V SR +   LA+ +G  ++E SAKTR+
Sbjct: 93  IHQ-YREQIKRVKDSDDVPMVLVGNKCDLAARTVESR-QAQDLARSYGIPYIETSAKTRQ 150
Query: 164 NVEQCFEQLALKI 176
            VE  F  L  +I
Sbjct: 151 GVEDAFYTLVREI 163

>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1 Length = 180

Iteration: 1
 Score = 63.9 bits (154), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 81/172 (47%), Gaps = 17/172 (9%)
Query: 14  SFKILLIGDSGVGKXXXXXXXXXXXXX-XXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQ 72
           + K +++GD  VGK                 PT+  ++   ++ V GK + L +WDTAG 
Sbjct: 6   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGL 64
Query: 73  ERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVD- 131
           E +  L    Y      ++ + +    +F N+   W  EV  +  N   +  LVG K+D 
Sbjct: 65  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPII--LVGTKLDL 122
Query: 132 RDSERVVSR-----------EEGIALAKEHGSL-FLECSAKTRENVEQCFEQ 171
           RD +  + +            +G+A+AKE G++ +LECSA T+  ++  F++
Sbjct: 123 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 174

>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form Length = 166

Iteration: 1
 Score = 63.5 bits (153), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 70/133 (52%), Gaps = 3/133 (2%)
Query: 44  PTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTN 103
           PTI   ++ K + + G+   L I DTAG E +  +   Y R  +G + V+ +   ++F +
Sbjct: 34  PTIEDSYR-KQVVIDGETCLLDILDTAGGEEYSAMRDQYMRTGEGFLCVFAINNTKSFED 92
Query: 104 LSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRE 163
           +   + +++     + D   +LVGNK D  +  V SR +   LA+ +G  ++E SAKTR+
Sbjct: 93  IHQ-YREQIKRVKDSDDVPMVLVGNKCDLAARTVESR-QAQDLARSYGIPYIETSAKTRQ 150
Query: 164 NVEQCFEQLALKI 176
            VE  F  L  +I
Sbjct: 151 GVEDAFYTLVREI 163

>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant Length = 204

Iteration: 1
 Score = 63.5 bits (153), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 81/172 (47%), Gaps = 17/172 (9%)
Query: 14  SFKILLIGDSGVGKX-XXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQ 72
           + K +++GD  VGK                 PT+  ++   ++ V GK + L +WDTAG 
Sbjct: 30  AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGL 88
Query: 73  ERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVD- 131
           E +  L    Y      ++ + +    +F N+   W  EV  +  N   +  LVG K+D 
Sbjct: 89  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPII--LVGTKLDL 146
Query: 132 RDSERVVSR-----------EEGIALAKEHGSL-FLECSAKTRENVEQCFEQ 171
           RD +  + +            +G+A+AKE G++ +LECSA T+  ++  F++
Sbjct: 147 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 198

>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 63.5 bits (153), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 70/133 (52%), Gaps = 3/133 (2%)
Query: 44  PTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTN 103
           PTI   ++ K + + G+   L I DTAG E +  +   Y R  +G + V+ +   ++F +
Sbjct: 34  PTIEDSYR-KQVVIDGETCLLDILDTAGLEEYSAMRDQYMRTGEGFLCVFAINNTKSFED 92
Query: 104 LSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRE 163
           +   + +++     + D   +LVGNK D  +  V SR +   LA+ +G  ++E SAKTR+
Sbjct: 93  IHQ-YREQIKRVKDSDDVPMVLVGNKCDLAARTVESR-QAQDLARSYGIPYIETSAKTRQ 150
Query: 164 NVEQCFEQLALKI 176
            VE  F  L  +I
Sbjct: 151 GVEDAFYTLVREI 163

>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp Length = 166

Iteration: 1
 Score = 63.5 bits (153), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 70/133 (52%), Gaps = 3/133 (2%)
Query: 44  PTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTN 103
           PTI   ++ K + + G+   L I DTAG E +  +   Y R  +G + V+ +   ++F +
Sbjct: 34  PTIEDSYR-KQVVIDGETCLLDILDTAGVEEYSAMRDQYMRTGEGFLCVFAINNTKSFED 92
Query: 104 LSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRE 163
           +   + +++     + D   +LVGNK D  +  V SR +   LA+ +G  ++E SAKTR+
Sbjct: 93  IHQ-YREQIKRVKDSDDVPMVLVGNKCDLAARTVESR-QAQDLARSYGIPYIETSAKTRQ 150
Query: 164 NVEQCFEQLALKI 176
            VE  F  L  +I
Sbjct: 151 GVEDAFYTLVREI 163

>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp Length = 166

Iteration: 1
 Score = 63.2 bits (152), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 70/133 (52%), Gaps = 3/133 (2%)
Query: 44  PTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTN 103
           PTI   ++ K + + G+   L I DTAG E +  +   Y R  +G + V+ +   ++F +
Sbjct: 34  PTIEDSYR-KQVVIDGETCLLDILDTAGIEEYSAMRDQYMRTGEGFLCVFAINNTKSFED 92
Query: 104 LSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRE 163
           +   + +++     + D   +LVGNK D  +  V SR +   LA+ +G  ++E SAKTR+
Sbjct: 93  IHQ-YREQIKRVKDSDDVPMVLVGNKCDLAARTVESR-QAQDLARSYGIPYIETSAKTRQ 150
Query: 164 NVEQCFEQLALKI 176
            VE  F  L  +I
Sbjct: 151 GVEDAFYTLVREI 163

>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And Inorganic Phosphate Length = 172

Iteration: 1
 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 70/159 (44%), Gaps = 2/159 (1%)
Query: 15  FKILLIGDSGVGKXXXXXXXXX-XXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQE 73
           +++ + G  GVGK                 PT+   ++ ++++       L I DT G  
Sbjct: 4   YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYR-QVISCDKSICTLQITDTTGSH 62
Query: 74  RFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRD 133
           +F  +           ILVY +T R++   L  ++ +  ++    +    MLVGNK D  
Sbjct: 63  QFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDES 122
Query: 134 SERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQL 172
             R V   E  ALA+     F+E SAK   NV++ F++L
Sbjct: 123 PSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQEL 161

>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State Length = 201

Iteration: 1
 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 78/168 (46%), Gaps = 15/168 (8%)
Query: 16  KILLIGDSGVGKXXXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERF 75
           K +L+GD  VGK                     D    +++V G+ ++L + DTAGQ+ F
Sbjct: 22  KCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEF 81
Query: 76  RTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVD---------LYSTNQDC---VK 123
             L    Y      +L + V    +F N+S+ W  E+          L  T  D    VK
Sbjct: 82  DKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVK 141
Query: 124 MLVGNKVDRDSERVVSREEGIALAKE-HGSLFLECSAKTRENVEQCFE 170
           +L+  ++D+  E+ V  E    LA+E   + ++ECSA T++N+++ F+
Sbjct: 142 VLI--ELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVFD 187

>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From Saccharomyces Cerevisiae Length = 188

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 45/169 (26%), Positives = 83/169 (49%), Gaps = 17/169 (10%)
Query: 16  KILLIGDSGVGKX-XXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER 74
           K++++GD   GK                 PT+  ++ +  + V G+R++L +WDTAGQE 
Sbjct: 12  KLVIVGDGACGKTCLLIVNSKGQFPEVYVPTVFENY-VADVEVDGRRVELALWDTAGQED 70
Query: 75  FRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVD--- 131
           +  L    Y  +  +++ + +   ++  N+ + W  EV  +   Q    +LVG KVD   
Sbjct: 71  YDRLRPLSYPDSNVVLICFSIDLPDSLENVQEKWIAEVLHFC--QGVPIILVGCKVDLRN 128
Query: 132 ---------RDSERVVSREEGIALAKEHGSL-FLECSAKTRENVEQCFE 170
                    ++ ++ V+ +EG ++A + G+  + ECSAKT   V + FE
Sbjct: 129 DPQTIEQLRQEGQQPVTSQEGQSVADQIGATGYYECSAKTGYGVREVFE 177

>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp Length = 175

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 52/160 (32%), Positives = 76/160 (47%), Gaps = 7/160 (4%)
Query: 15  FKILLIGDSGVGKXXXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER 74
           ++++L+GD GVGK                  +G D   + LTV G+   L + DT   E+
Sbjct: 5   YRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEK 64
Query: 75  FRTLTS--SYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQ-DCVKM-LVGNKV 130
                S  S  +G    ++VY +  R +F + S++    + L  T+Q D V + LVGNK 
Sbjct: 65  LDKSWSQESCLQGGSAYVIVYSIADRGSFESASEL---RIQLRRTHQADHVPIILVGNKA 121
Query: 131 DRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFE 170
           D    R VS EEG A A      F+E SA  + NV + FE
Sbjct: 122 DLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELFE 161

>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp (Type 1) Length = 183

Iteration: 1
 Score = 60.8 bits (146), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 41/130 (31%), Positives = 67/130 (51%), Gaps = 3/130 (2%)
Query: 44  PTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTN 103
           PTI  D  +K   +  +   L + DTAGQE F  +   Y R   G ++VY VT + +F +
Sbjct: 49  PTIE-DSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEH 107
Query: 104 LSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRE 163
           + D + + +      +    +LV NKVD    R V+R++G  +A ++   ++E SAK   
Sbjct: 108 V-DRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPP 166
Query: 164 -NVEQCFEQL 172
            NV++ F  L
Sbjct: 167 LNVDKTFHDL 176

>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2 Wildtype Length = 332

Iteration: 1
 Score = 60.8 bits (146), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 46/179 (25%), Positives = 83/179 (46%), Gaps = 17/179 (9%)
Query: 16  KILLIGDSGVGKX-XXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER 74
           K +++GD  VGK                 PT+  ++   ++ V GK + L +WDTAG E 
Sbjct: 157 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGLED 215
Query: 75  FRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVD-RD 133
           +  L    Y      ++ + +    +F ++   W  EV  +  N   +  LVG K+D RD
Sbjct: 216 YDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPII--LVGTKLDLRD 273
Query: 134 SERVVSR-----------EEGIALAKEHGSL-FLECSAKTRENVEQCFEQLALKIMEVP 180
            +  + +            +G+A+AKE G++ +LECSA T+  ++  F++    ++  P
Sbjct: 274 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPP 332

>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp Length = 183

Iteration: 1
 Score = 60.8 bits (146), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 41/130 (31%), Positives = 67/130 (51%), Gaps = 3/130 (2%)
Query: 44  PTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTN 103
           PTI  D  +K   +  +   L + DTAGQE F  +   Y R   G ++VY VT + +F +
Sbjct: 49  PTIE-DSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEH 107
Query: 104 LSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRE 163
           + D + + +      +    +LV NKVD    R V+R++G  +A ++   ++E SAK   
Sbjct: 108 V-DRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPP 166
Query: 164 -NVEQCFEQL 172
            NV++ F  L
Sbjct: 167 LNVDKTFHDL 176

>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450m Mutant Length = 332

Iteration: 1
 Score = 60.8 bits (146), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 46/179 (25%), Positives = 83/179 (46%), Gaps = 17/179 (9%)
Query: 16  KILLIGDSGVGKX-XXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER 74
           K +++GD  VGK                 PT+  ++   ++ V GK + L +WDTAG E 
Sbjct: 157 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGLED 215
Query: 75  FRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVD-RD 133
           +  L    Y      ++ + +    +F ++   W  EV  +  N   +  LVG K+D RD
Sbjct: 216 YDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPII--LVGTKLDLRD 273
Query: 134 SERVVSR-----------EEGIALAKEHGSL-FLECSAKTRENVEQCFEQLALKIMEVP 180
            +  + +            +G+A+AKE G++ +LECSA T+  ++  F++    ++  P
Sbjct: 274 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPP 332

>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450a Mutant Length = 332

Iteration: 1
 Score = 60.8 bits (146), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 46/179 (25%), Positives = 83/179 (46%), Gaps = 17/179 (9%)
Query: 16  KILLIGDSGVGKX-XXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER 74
           K +++GD  VGK                 PT+  ++   ++ V GK + L +WDTAG E 
Sbjct: 157 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGLED 215
Query: 75  FRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVD-RD 133
           +  L    Y      ++ + +    +F ++   W  EV  +  N   +  LVG K+D RD
Sbjct: 216 YDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPII--LVGTKLDLRD 273
Query: 134 SERVVSR-----------EEGIALAKEHGSL-FLECSAKTRENVEQCFEQLALKIMEVP 180
            +  + +            +G+A+AKE G++ +LECSA T+  ++  F++    ++  P
Sbjct: 274 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPP 332

>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp Length = 178

Iteration: 1
 Score = 60.5 bits (145), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 41/130 (31%), Positives = 67/130 (51%), Gaps = 3/130 (2%)
Query: 44  PTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTN 103
           PTI  D  +K   +  +   L + DTAGQE F  +   Y R   G ++VY VT + +F +
Sbjct: 44  PTIE-DSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEH 102
Query: 104 LSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRE 163
           + D + + +      +    +LV NKVD    R V+R++G  +A ++   ++E SAK   
Sbjct: 103 V-DRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPP 161
Query: 164 -NVEQCFEQL 172
            NV++ F  L
Sbjct: 162 LNVDKTFHDL 171

>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The Inactive Gdp Bound State Length = 199

Iteration: 1
 Score = 60.5 bits (145), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 36/109 (33%), Positives = 57/109 (52%), Gaps = 1/109 (0%)
Query: 64  LTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVK 123
           L I DT G  +F  +           ILV+ VT +++   L  ++   V +  + +D   
Sbjct: 58  LQITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPV 117
Query: 124 MLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQL 172
           MLVGNK D +++R V   E  A+A+E    F+E SAK   NV++ F++L
Sbjct: 118 MLVGNKCD-ETQREVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQEL 165

>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP Length = 183

Iteration: 1
 Score = 60.5 bits (145), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 36/110 (32%), Positives = 59/110 (53%), Gaps = 2/110 (1%)
Query: 64  LTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVK 123
           L + DTAGQE F  +   Y R   G ++VY VT + +F ++ D + + +      +    
Sbjct: 68  LDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHV-DRFHQLILRVKDRESFPM 126
Query: 124 MLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRE-NVEQCFEQL 172
           +LV NKVD    R V+R++G  +A ++   ++E SAK    NV++ F  L
Sbjct: 127 ILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDL 176

>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A Self-Activating Gtpase Length = 203

Iteration: 1
 Score = 60.1 bits (144), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 52/202 (25%), Positives = 87/202 (43%), Gaps = 36/202 (17%)
Query: 14  SFKILLIGDSGVGKX-XXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQ 72
           + K +++GD  VGK                 PT+  ++   ++ V GK + L +WDTAGQ
Sbjct: 5   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQ 63
Query: 73  ERFRTLTSSYYRGAQGIILVYDVTRR-------------------ETFTNLSDVWAKEVD 113
           E +  L    Y    G     D+T R                    +F N+   W  EV 
Sbjct: 64  EDYDRLRPLSYPQTVGETYGKDITSRGKDKPIADVFLICFSLVSPASFENVRAKWYPEVR 123
Query: 114 LYSTNQDCVKMLVGNKVD-RDSERVVSR-----------EEGIALAKEHGSL-FLECSAK 160
            +  N   +  LVG K+D RD +  + +            +G+A+AKE G++ +LECSA 
Sbjct: 124 HHCPNTPII--LVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL 181
Query: 161 TRENVEQCFEQLALKIMEVPSL 182
           T+  ++  F++    ++  P +
Sbjct: 182 TQRGLKTVFDEAIRAVLCPPPV 203

>pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal Domain Sopb In Complex With Cdc42 Length = 193

Iteration: 1
 Score = 60.1 bits (144), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 45/197 (22%), Positives = 90/197 (45%), Gaps = 24/197 (12%)
Query: 1   MGSSSGQSNSYDLSFKILLIGDSGVGKX-XXXXXXXXXXXXXXXPTIGVDFKIKLLTVAG 59
           MGSS    +    + K +++GD  VGK                 PT+  ++ + ++ + G
Sbjct: 1   MGSSHHHHHHMQ-TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGG 58
Query: 60  KRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQ 119
           +   L ++DTAGQE +  L    Y      ++ + V    +F N+ + W  E+       
Sbjct: 59  EPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----TH 113
Query: 120 DCVK---MLVGNKVD------------RDSERVVSREEGIALAKEHGSL-FLECSAKTRE 163
            C K   +LVG ++D            ++ ++ ++ E    LA++  ++ ++ECSA T++
Sbjct: 114 HCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQK 173
Query: 164 NVEQCFEQLALKIMEVP 180
            ++  F++  L  +E P
Sbjct: 174 GLKNVFDEAILAALEPP 190

>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The Active Gtp Bound State Length = 198

Iteration: 1
 Score = 59.7 bits (143), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/189 (25%), Positives = 87/189 (46%), Gaps = 18/189 (9%)
Query: 16  KILLIGDSGVGKXXXXXXXXX-XXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER 74
           K++L+GD   GK                 PT+  ++   L T   +R++L++WDT+G   
Sbjct: 13  KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLET-EEQRVELSLWDTSGSPY 71
Query: 75  FRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVD--- 131
           +  +    Y  +  ++L +D++R ET  +    W  E+  Y  +     +L+G K D   
Sbjct: 72  YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTR--VLLIGCKTDLRT 129
Query: 132 ---------RDSERVVSREEGIALAKEHGS-LFLECSAKTRE-NVEQCFEQLALKIMEVP 180
                       +  +S E+G A+AK+ G+ ++LE SA T E ++   F   ++  +  P
Sbjct: 130 DLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCLNKP 189
Query: 181 SLLEEGSNV 189
           S L + S V
Sbjct: 190 SPLPQKSPV 198

>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1 Length = 214

Iteration: 1
 Score = 59.7 bits (143), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/189 (25%), Positives = 87/189 (46%), Gaps = 18/189 (9%)
Query: 16  KILLIGDSGVGKXXXXXXXXX-XXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER 74
           K++L+GD   GK                 PT+  ++   L T   +R++L++WDT+G   
Sbjct: 29  KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLET-EEQRVELSLWDTSGSPY 87
Query: 75  FRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVD--- 131
           +  +    Y  +  ++L +D++R ET  +    W  E+  Y  +     +L+G K D   
Sbjct: 88  YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTR--VLLIGCKTDLRT 145
Query: 132 ---------RDSERVVSREEGIALAKEHGS-LFLECSAKTRE-NVEQCFEQLALKIMEVP 180
                       +  +S E+G A+AK+ G+ ++LE SA T E ++   F   ++  +  P
Sbjct: 146 DLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCLNKP 205
Query: 181 SLLEEGSNV 189
           S L + S V
Sbjct: 206 SPLPQKSPV 214

>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound With Rnd1 Gtpase Length = 197

Iteration: 1
 Score = 59.7 bits (143), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/189 (25%), Positives = 87/189 (46%), Gaps = 18/189 (9%)
Query: 16  KILLIGDSGVGKXXXXXXXXX-XXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER 74
           K++L+GD   GK                 PT+  ++   L T   +R++L++WDT+G   
Sbjct: 12  KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLET-EEQRVELSLWDTSGSPY 70
Query: 75  FRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVD--- 131
           +  +    Y  +  ++L +D++R ET  +    W  E+  Y  +     +L+G K D   
Sbjct: 71  YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTR--VLLIGCKTDLRT 128
Query: 132 ---------RDSERVVSREEGIALAKEHGS-LFLECSAKTRE-NVEQCFEQLALKIMEVP 180
                       +  +S E+G A+AK+ G+ ++LE SA T E ++   F   ++  +  P
Sbjct: 129 DLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCLNKP 188
Query: 181 SLLEEGSNV 189
           S L + S V
Sbjct: 189 SPLPQKSPV 197

>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex Length = 192

Iteration: 1
 Score = 59.7 bits (143), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/172 (26%), Positives = 80/172 (46%), Gaps = 17/172 (9%)
Query: 14  SFKILLIGDSGVGKXXXXXXXXXXXXX-XXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQ 72
           + K +++GD  VGK                 PT+  ++   ++ V  K + L +WDTAGQ
Sbjct: 3   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDSKPVNLGLWDTAGQ 61
Query: 73  ERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVD- 131
           E +  L    Y      ++ + +    ++ N+   W  EV  +  +   +  LVG K+D 
Sbjct: 62  EDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPII--LVGTKLDL 119
Query: 132 RDSERVVSR-----------EEGIALAKEHGSL-FLECSAKTRENVEQCFEQ 171
           RD +  + +            +G+ALAKE  S+ +LECSA T+  ++  F++
Sbjct: 120 RDDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDE 171

>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp Length = 185

Iteration: 1
 Score = 59.7 bits (143), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 49/184 (26%), Positives = 84/184 (45%), Gaps = 21/184 (11%)
Query: 2   GSSSGQSNSYDLSFKILLIGDSGVGKXXXXXXXXXXXXX-XXXPTIGVDFKIKLLTVAGK 60
           G  SG S +     K +++GD  VGK                 PT+  ++   ++ V  K
Sbjct: 1   GGGSGGSQA----IKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDSK 55
Query: 61  RLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQD 120
            + L +WDTAGQE +  L    Y      ++ + +    ++ N+   W  EV  +  +  
Sbjct: 56  PVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTP 115
Query: 121 CVKMLVGNKVD-RDSERVVSR-----------EEGIALAKEHGSL-FLECSAKTRENVEQ 167
            +  LVG K+D RD +  + +            +G+ALAKE  S+ +LECSA T+  ++ 
Sbjct: 116 II--LVGTKLDLRDDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKT 173
Query: 168 CFEQ 171
            F++
Sbjct: 174 VFDE 177

>pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In Complex With The Multifunctional Regulator Rhogdi Length = 191

Iteration: 1
 Score = 59.3 bits (142), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/188 (22%), Positives = 87/188 (46%), Gaps = 23/188 (12%)
Query: 10  SYDLSFKILLIGDSGVGKX-XXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWD 68
           S+  + K +++GD  VGK                 PT+  ++ + ++ + G+   L ++D
Sbjct: 2   SHMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFD 60
Query: 69  TAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVK---ML 125
           TAGQE +  L    Y      ++ + V    +F N+ + W  E+        C K   +L
Sbjct: 61  TAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLL 115
Query: 126 VGNKVD------------RDSERVVSREEGIALAKEHGSL-FLECSAKTRENVEQCFEQL 172
           VG ++D            ++ ++ ++ E    LA++  ++ ++ECSA T++ ++  F++ 
Sbjct: 116 VGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEA 175
Query: 173 ALKIMEVP 180
            L  +E P
Sbjct: 176 ILAALEPP 183

>pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex Length = 194

Iteration: 1
 Score = 59.3 bits (142), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/188 (22%), Positives = 87/188 (46%), Gaps = 23/188 (12%)
Query: 10  SYDLSFKILLIGDSGVGKX-XXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWD 68
           S+  + K +++GD  VGK                 PT+  ++ + ++ + G+   L ++D
Sbjct: 2   SHMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFD 60
Query: 69  TAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVK---ML 125
           TAGQE +  L    Y      ++ + V    +F N+ + W  E+        C K   +L
Sbjct: 61  TAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLL 115
Query: 126 VGNKVD------------RDSERVVSREEGIALAKEHGSL-FLECSAKTRENVEQCFEQL 172
           VG ++D            ++ ++ ++ E    LA++  ++ ++ECSA T++ ++  F++ 
Sbjct: 116 VGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEA 175
Query: 173 ALKIMEVP 180
            L  +E P
Sbjct: 176 ILAALEPP 183

>pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42. Length = 190

Iteration: 1
 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 42/188 (22%), Positives = 87/188 (46%), Gaps = 23/188 (12%)
Query: 10  SYDLSFKILLIGDSGVGKX-XXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWD 68
           S+  + K +++GD  VGK                 PT+  ++ + ++ + G+   L ++D
Sbjct: 1   SHMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFD 59
Query: 69  TAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVK---ML 125
           TAGQE +  L    Y      ++ + V    +F N+ + W  E+        C K   +L
Sbjct: 60  TAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLL 114
Query: 126 VGNKVD------------RDSERVVSREEGIALAKEHGSL-FLECSAKTRENVEQCFEQL 172
           VG ++D            ++ ++ ++ E    LA++  ++ ++ECSA T++ ++  F++ 
Sbjct: 115 VGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEA 174
Query: 173 ALKIMEVP 180
            L  +E P
Sbjct: 175 ILAALEPP 182

>pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4 Length = 180

Iteration: 1
 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 56/125 (44%), Gaps = 5/125 (4%)
Query: 15  FKILLIGDSGVGKXXXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER 74
            +IL++G    GK                PTIG + +    TV  K +  T+WD  GQ+R
Sbjct: 18  MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE----TVEYKNICFTVWDVGGQDR 73
Query: 75  FRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDS 134
            R L   Y++  QG+I V D   RE    ++D   K + L    +D V +L  NK D  +
Sbjct: 74  IRPLWKHYFQNTQGLIFVVDSNDRERIQEVADELQKML-LVDELRDAVLLLFANKQDLPN 132
Query: 135 ERVVS 139
              +S
Sbjct: 133 AMAIS 137

>pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In Complex With Cdc42 (T17n Mutant) Length = 195

Iteration: 1
 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/184 (22%), Positives = 85/184 (46%), Gaps = 23/184 (12%)
Query: 14  SFKILLIGDSGVGKX-XXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQ 72
           + K +++GD  VGK                 PT+  ++ + ++ + G+   L ++DTAGQ
Sbjct: 10  TIKCVVVGDGAVGKNCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQ 68
Query: 73  ERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVK---MLVGNK 129
           E +  L    Y      ++ + V    +F N+ + W  E+        C K   +LVG +
Sbjct: 69  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVGTQ 123
Query: 130 VD------------RDSERVVSREEGIALAKEHGSL-FLECSAKTRENVEQCFEQLALKI 176
           +D            ++ ++ ++ E    LA++  ++ ++ECSA T++ ++  F++  L  
Sbjct: 124 IDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAA 183
Query: 177 MEVP 180
           +E P
Sbjct: 184 LEPP 187

>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs Length = 184

Iteration: 1
 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 49/184 (26%), Positives = 84/184 (45%), Gaps = 20/184 (10%)
Query: 2   GSSSGQSNSYDLSFKILLIGDSGVGKX-XXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGK 60
           G  SG S     + K +++GD  VGK                 PT+  ++   ++ V  K
Sbjct: 1   GGGSGGSMQ---AIKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDSK 56
Query: 61  RLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQD 120
            + L +WDTAGQE +  L    Y      ++ + +    ++ N+   W  EV  +  +  
Sbjct: 57  PVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTP 116
Query: 121 CVKMLVGNKVD-RDSERVVSR-----------EEGIALAKEHGSL-FLECSAKTRENVEQ 167
            +  LVG K+D RD +  + +            +G+ALAKE  S+ +LECSA T+  ++ 
Sbjct: 117 II--LVGTKLDLRDDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKT 174
Query: 168 CFEQ 171
            F++
Sbjct: 175 VFDE 178

>pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures Length = 194

Iteration: 1
 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/184 (22%), Positives = 85/184 (46%), Gaps = 23/184 (12%)
Query: 14  SFKILLIGDSGVGKX-XXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQ 72
           + K +++GD  VGK                 PT+  ++ + ++ + G+   L ++DTAGQ
Sbjct: 10  TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQ 68
Query: 73  ERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVK---MLVGNK 129
           E +  L    Y      ++ + V    +F N+ + W  E+        C K   +LVG +
Sbjct: 69  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVGTQ 123
Query: 130 VD------------RDSERVVSREEGIALAKEHGSL-FLECSAKTRENVEQCFEQLALKI 176
           +D            ++ ++ ++ E    LA++  ++ ++ECSA T++ ++  F++  L  
Sbjct: 124 IDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAA 183
Query: 177 MEVP 180
           +E P
Sbjct: 184 LEPP 187

>pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The Crib Domain Of Human P21-Activated Kinase 6 (Pak6) Length = 192

Iteration: 1
 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/184 (22%), Positives = 85/184 (46%), Gaps = 23/184 (12%)
Query: 14  SFKILLIGDSGVGKX-XXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQ 72
           + K +++GD  VGK                 PT+  ++ + ++ + G+   L ++DTAGQ
Sbjct: 4   TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQ 62
Query: 73  ERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVK---MLVGNK 129
           E +  L    Y      ++ + V    +F N+ + W  E+        C K   +LVG +
Sbjct: 63  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVGTQ 117
Query: 130 VD------------RDSERVVSREEGIALAKEHGSL-FLECSAKTRENVEQCFEQLALKI 176
           +D            ++ ++ ++ E    LA++  ++ ++ECSA T++ ++  F++  L  
Sbjct: 118 IDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAA 177
Query: 177 MEVP 180
           +E P
Sbjct: 178 LEPP 181

>pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX. Length = 191

Iteration: 1
 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/184 (22%), Positives = 85/184 (46%), Gaps = 23/184 (12%)
Query: 14  SFKILLIGDSGVGKX-XXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQ 72
           + K +++GD  VGK                 PT+  ++ + ++ + G+   L ++DTAGQ
Sbjct: 3   TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQ 61
Query: 73  ERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVK---MLVGNK 129
           E +  L    Y      ++ + V    +F N+ + W  E+        C K   +LVG +
Sbjct: 62  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVGTQ 116
Query: 130 VD------------RDSERVVSREEGIALAKEHGSL-FLECSAKTRENVEQCFEQLALKI 176
           +D            ++ ++ ++ E    LA++  ++ ++ECSA T++ ++  F++  L  
Sbjct: 117 IDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAA 176
Query: 177 MEVP 180
           +E P
Sbjct: 177 LEPP 180

>pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is Required Length = 189

Iteration: 1
 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/184 (22%), Positives = 85/184 (46%), Gaps = 23/184 (12%)
Query: 14  SFKILLIGDSGVGKX-XXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQ 72
           + K +++GD  VGK                 PT+  ++ + ++ + G+   L ++DTAGQ
Sbjct: 3   TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQ 61
Query: 73  ERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVK---MLVGNK 129
           E +  L    Y      ++ + V    +F N+ + W  E+        C K   +LVG +
Sbjct: 62  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVGTQ 116
Query: 130 VD------------RDSERVVSREEGIALAKEHGSL-FLECSAKTRENVEQCFEQLALKI 176
           +D            ++ ++ ++ E    LA++  ++ ++ECSA T++ ++  F++  L  
Sbjct: 117 IDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAA 176
Query: 177 MEVP 180
           +E P
Sbjct: 177 LEPP 180

>pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN Complex With The Placental Isoform Of Human Cdc42 Length = 188

Iteration: 1
 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/184 (22%), Positives = 85/184 (46%), Gaps = 23/184 (12%)
Query: 14  SFKILLIGDSGVGKX-XXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQ 72
           + K +++GD  VGK                 PT+  ++ + ++ + G+   L ++DTAGQ
Sbjct: 3   TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQ 61
Query: 73  ERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVK---MLVGNK 129
           E +  L    Y      ++ + V    +F N+ + W  E+        C K   +LVG +
Sbjct: 62  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVGTQ 116
Query: 130 VD------------RDSERVVSREEGIALAKEHGSL-FLECSAKTRENVEQCFEQLALKI 176
           +D            ++ ++ ++ E    LA++  ++ ++ECSA T++ ++  F++  L  
Sbjct: 117 IDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAA 176
Query: 177 MEVP 180
           +E P
Sbjct: 177 LEPP 180

>pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp Form Length = 191

Iteration: 1
 Score = 58.5 bits (140), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 41/184 (22%), Positives = 85/184 (46%), Gaps = 23/184 (12%)
Query: 14  SFKILLIGDSGVGKX-XXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQ 72
           + K +++GD  VGK                 PT+  ++ + ++ + G+   L ++DTAGQ
Sbjct: 3   TIKCVVVGDVAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQ 61
Query: 73  ERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVK---MLVGNK 129
           E +  L    Y      ++ + V    +F N+ + W  E+        C K   +LVG +
Sbjct: 62  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVGTQ 116
Query: 130 VD------------RDSERVVSREEGIALAKEHGSL-FLECSAKTRENVEQCFEQLALKI 176
           +D            ++ ++ ++ E    LA++  ++ ++ECSA T++ ++  F++  L  
Sbjct: 117 IDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAA 176
Query: 177 MEVP 180
           +E P
Sbjct: 177 LEPP 180

>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2 (Scarf2) Complexed With Gdp-3'p At 1.6a Resolution Length = 181

Iteration: 1
 Score = 58.5 bits (140), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 53/121 (43%), Gaps = 13/121 (10%)
Query: 15  FKILLIGDSGVGKXXXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER 74
            +IL++G  G GK                PTIG + +    TV  K +  T+WD  GQ+R
Sbjct: 18  MRILMVGLDGAGKTTVLYKLKLGEVITTIPTIGFNVE----TVQYKNISFTVWDVGGQDR 73
Query: 75  FRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQD----CVKMLVGNKV 130
            R+L   YYR  +G+I V D   R          A+EV     N+D     V ++  NK 
Sbjct: 74  IRSLWRHYYRNTEGVIFVIDSNDRSRIGE-----AREVMQRMLNEDELRNAVWLVFANKQ 128
Query: 131 D 131
           D
Sbjct: 129 D 129

>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe Complex Structure Length = 200

Iteration: 1
 Score = 58.2 bits (139), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 42/178 (23%), Positives = 81/178 (45%), Gaps = 17/178 (9%)
Query: 1   MGSSSGQSNSYDLSFKILLIGDSGVGKXXXXXXXXXX-XXXXXXPTIGVDFKIKLLTVAG 59
           + S S    + ++  KI+++GDS  GK                 PT+  ++      +  
Sbjct: 10  LSSKSIMDPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASF-EIDT 68
Query: 60  KRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQ 119
           +R++L++WDT+G   +  +    Y  +  +++ +D++R ET  ++   W  E+  +  N 
Sbjct: 69  QRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNT 128
Query: 120 DCVKMLVGNKVD------------RDSERVVSREEGIALAKEHG-SLFLECSAKTREN 164
               +LVG K D               +  VS ++G  +AK+ G + ++ECSA   EN
Sbjct: 129 K--MLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSEN 184

>pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex Length = 190

Iteration: 1
 Score = 57.8 bits (138), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 41/184 (22%), Positives = 84/184 (45%), Gaps = 23/184 (12%)
Query: 14  SFKILLIGDSGVGKX-XXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQ 72
           + K +++GD  VGK                 PT+  ++ + +  + G+   L ++DTAGQ
Sbjct: 3   TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTV-XIGGEPYTLGLFDTAGQ 61
Query: 73  ERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVK---MLVGNK 129
           E +  L    Y      ++ + V    +F N+ + W  E+        C K   +LVG +
Sbjct: 62  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVGTQ 116
Query: 130 VD------------RDSERVVSREEGIALAKEHGSL-FLECSAKTRENVEQCFEQLALKI 176
           +D            ++ ++ ++ E    LA++  ++ ++ECSA T++ ++  F++  L  
Sbjct: 117 IDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAA 176
Query: 177 MEVP 180
           +E P
Sbjct: 177 LEPP 180

>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A Constitutively Activated Small G Protein Length = 205

Iteration: 1
 Score = 57.8 bits (138), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 40/163 (24%), Positives = 75/163 (46%), Gaps = 17/163 (10%)
Query: 16  KILLIGDSGVGKXXXXXXXXXX-XXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER 74
           KI+++GDS  GK                 PT+  ++      +  +R++L++WDT+G   
Sbjct: 30  KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASF-EIDTQRIELSLWDTSGSPY 88
Query: 75  FRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVD--- 131
           +  +    Y  +  +++ +D++R ET  ++   W  E+  +  N     +LVG K D   
Sbjct: 89  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTK--MLLVGCKSDLRT 146
Query: 132 ---------RDSERVVSREEGIALAKEHG-SLFLECSAKTREN 164
                       +  VS ++G  +AK+ G + ++ECSA   EN
Sbjct: 147 DVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSEN 189

>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS Length = 184

Iteration: 1
 Score = 57.8 bits (138), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 40/163 (24%), Positives = 75/163 (46%), Gaps = 17/163 (10%)
Query: 16  KILLIGDSGVGKXXXXXXXXXX-XXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER 74
           KI+++GDS  GK                 PT+  ++      +  +R++L++WDT+G   
Sbjct: 9   KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASF-EIDTQRIELSLWDTSGSPY 67
Query: 75  FRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVD--- 131
           +  +    Y  +  +++ +D++R ET  ++   W  E+  +  N     +LVG K D   
Sbjct: 68  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTK--MLLVGCKSDLRT 125
Query: 132 ---------RDSERVVSREEGIALAKEHG-SLFLECSAKTREN 164
                       +  VS ++G  +AK+ G + ++ECSA   EN
Sbjct: 126 DVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSEN 168

>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core Complex Length = 164

Iteration: 1
 Score = 57.0 bits (136), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 37/121 (30%), Positives = 54/121 (44%), Gaps = 13/121 (10%)
Query: 15  FKILLIGDSGVGKXXXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER 74
            +IL++G  G GK                PTIG + +    TV  K +  T+WD  GQ+R
Sbjct: 1   MRILMVGLDGAGKTTVLYKLKLGEVITTIPTIGFNVE----TVQYKNISFTVWDVGGQDR 56
Query: 75  FRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVK----MLVGNKV 130
            R+L   YYR  +G+I V D   R          A+EV     N+D ++    ++  NK 
Sbjct: 57  IRSLWRHYYRNTEGVIFVVDSNDRSRIGE-----AREVMQRMLNEDELRNAAWLVFANKQ 111
Query: 131 D 131
           D
Sbjct: 112 D 112

>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein, Gdp- Bound Length = 181

Iteration: 1
 Score = 57.0 bits (136), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 54/120 (45%), Gaps = 13/120 (10%)
Query: 16  KILLIGDSGVGKXXXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERF 75
           +IL++G  G GK                PTIG + +    TV  K +  T+WD  GQ+R 
Sbjct: 19  RILMVGLDGAGKTTVLYKLKLGEVITTIPTIGFNVE----TVQYKNISFTVWDVGGQDRI 74
Query: 76  RTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVK----MLVGNKVD 131
           R+L   YYR  +G+I V D   R          A+EV     N+D ++    ++  NK D
Sbjct: 75  RSLWRHYYRNTEGVIFVVDSNDRSRIGE-----AREVMQRMLNEDELRNAAWLVFANKQD 129

>pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase Binding Domain Of Wasp Length = 179

Iteration: 1
 Score = 57.0 bits (136), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 40/182 (21%), Positives = 84/182 (46%), Gaps = 23/182 (12%)
Query: 14  SFKILLIGDSGVGKX-XXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQ 72
           + K +++GD  VGK                 PT+  ++ + ++ + G+   L ++DTAGQ
Sbjct: 3   TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQ 61
Query: 73  ERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVK---MLVGNK 129
           E +  L    Y      ++ + V    +F N+ + W  E+        C K   +LVG +
Sbjct: 62  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVGTQ 116
Query: 130 VD------------RDSERVVSREEGIALAKEHGSL-FLECSAKTRENVEQCFEQLALKI 176
           +D            ++ ++ ++ E    LA++  ++ ++ECSA T++ ++  F++  L  
Sbjct: 117 IDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAA 176
Query: 177 ME 178
           +E
Sbjct: 177 LE 178

>pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex Length = 182

Iteration: 1
 Score = 57.0 bits (136), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 40/182 (21%), Positives = 84/182 (46%), Gaps = 23/182 (12%)
Query: 14  SFKILLIGDSGVGKX-XXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQ 72
           + K +++GD  VGK                 PT+  ++ + ++ + G+   L ++DTAGQ
Sbjct: 7   TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQ 65
Query: 73  ERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVK---MLVGNK 129
           E +  L    Y      ++ + V    +F N+ + W  E+        C K   +LVG +
Sbjct: 66  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVGTQ 120
Query: 130 VD------------RDSERVVSREEGIALAKEHGSL-FLECSAKTRENVEQCFEQLALKI 176
           +D            ++ ++ ++ E    LA++  ++ ++ECSA T++ ++  F++  L  
Sbjct: 121 IDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAA 180
Query: 177 ME 178
           +E
Sbjct: 181 LE 182

>pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain Of The Salmonella Typhimurium Sope Toxin And Human Cdc42 Length = 180

Iteration: 1
 Score = 56.6 bits (135), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 40/182 (21%), Positives = 84/182 (46%), Gaps = 23/182 (12%)
Query: 14  SFKILLIGDSGVGKX-XXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQ 72
           + K +++GD  VGK                 PT+  ++ + ++ + G+   L ++DTAGQ
Sbjct: 5   TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQ 63
Query: 73  ERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVK---MLVGNK 129
           E +  L    Y      ++ + V    +F N+ + W  E+        C K   +LVG +
Sbjct: 64  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVGTQ 118
Query: 130 VD------------RDSERVVSREEGIALAKEHGSL-FLECSAKTRENVEQCFEQLALKI 176
           +D            ++ ++ ++ E    LA++  ++ ++ECSA T++ ++  F++  L  
Sbjct: 119 IDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAA 178
Query: 177 ME 178
           +E
Sbjct: 179 LE 180

>pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs Length = 178

Iteration: 1
 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 40/182 (21%), Positives = 84/182 (46%), Gaps = 23/182 (12%)
Query: 14  SFKILLIGDSGVGKX-XXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQ 72
           + K +++GD  VGK                 PT+  ++ + ++ + G+   L ++DTAGQ
Sbjct: 3   TIKCVVVGDGAVGKTCLLISYTTNKLPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQ 61
Query: 73  ERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVK---MLVGNK 129
           E +  L    Y      ++ + V    +F N+ + W  E+        C K   +LVG +
Sbjct: 62  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVGTQ 116
Query: 130 VD------------RDSERVVSREEGIALAKEHGSL-FLECSAKTRENVEQCFEQLALKI 176
           +D            ++ ++ ++ E    LA++  ++ ++ECSA T++ ++  F++  L  
Sbjct: 117 IDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAA 176
Query: 177 ME 178
           +E
Sbjct: 177 LE 178

>pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide Derived From P-21 Activated Kinase, Nmr, 20 Structures Length = 178

Iteration: 1
 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 40/182 (21%), Positives = 84/182 (46%), Gaps = 23/182 (12%)
Query: 14  SFKILLIGDSGVGKX-XXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQ 72
           + K +++GD  VGK                 PT+  ++ + ++ + G+   L ++DTAGQ
Sbjct: 3   TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQ 61
Query: 73  ERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVK---MLVGNK 129
           E +  L    Y      ++ + V    +F N+ + W  E+        C K   +LVG +
Sbjct: 62  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVGTQ 116
Query: 130 VD------------RDSERVVSREEGIALAKEHGSL-FLECSAKTRENVEQCFEQLALKI 176
           +D            ++ ++ ++ E    LA++  ++ ++ECSA T++ ++  F++  L  
Sbjct: 117 IDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAA 176
Query: 177 ME 178
           +E
Sbjct: 177 LE 178

>pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With Cdc42-Gmppnp Length = 178

Iteration: 1
 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 40/182 (21%), Positives = 83/182 (45%), Gaps = 23/182 (12%)
Query: 14  SFKILLIGDSGVGKX-XXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQ 72
           + K +++GD  VGK                 PT+  ++ + ++ + G+   L ++DTAGQ
Sbjct: 3   TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQ 61
Query: 73  ERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVK---MLVGNK 129
           E +  L    Y      ++ + V    +F N+ + W  E+        C K   +LVG +
Sbjct: 62  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVGTQ 116
Query: 130 VD------------RDSERVVSREEGIALAKEHGSL-FLECSAKTRENVEQCFEQLALKI 176
           +D            ++ ++ ++ E    LA++  ++ ++ECSA T+  ++  F++  L  
Sbjct: 117 IDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVFDEAILAA 176
Query: 177 ME 178
           +E
Sbjct: 177 LE 178

>pdb|1CF4|A Chain A, Cdc42ACK GTPASE-Binding Domain Complex Length = 184

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/184 (21%), Positives = 84/184 (45%), Gaps = 23/184 (12%)
Query: 14  SFKILLIGDSGVGKX-XXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQ 72
           + K +++GD  VGK                 PT+  ++ + ++ + G+   L ++DTAG 
Sbjct: 3   TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGL 61
Query: 73  ERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVK---MLVGNK 129
           E +  L    Y      ++ + V    +F N+ + W  E+        C K   +LVG +
Sbjct: 62  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVGTQ 116
Query: 130 VD------------RDSERVVSREEGIALAKEHGSL-FLECSAKTRENVEQCFEQLALKI 176
           +D            ++ ++ ++ E    LA++  ++ ++ECSA T++ ++  F++  L  
Sbjct: 117 IDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAA 176
Query: 177 MEVP 180
           +E P
Sbjct: 177 LEPP 180

>pdb|1NF3|A Chain A, Structure Of Cdc42 In A Complex With The Gtpase-Binding Domain Of The Cell Polarity Protein, Par6 Length = 195

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/184 (21%), Positives = 84/184 (45%), Gaps = 23/184 (12%)
Query: 14  SFKILLIGDSGVGKX-XXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQ 72
           + K +++GD  VGK                 PT+  ++ + ++ + G+   L ++DTAG 
Sbjct: 7   TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGL 65
Query: 73  ERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVK---MLVGNK 129
           E +  L    Y      ++ + V    +F N+ + W  E+        C K   +LVG +
Sbjct: 66  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVGTQ 120
Query: 130 VD------------RDSERVVSREEGIALAKEHGSL-FLECSAKTRENVEQCFEQLALKI 176
           +D            ++ ++ ++ E    LA++  ++ ++ECSA T++ ++  F++  L  
Sbjct: 121 IDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAA 180
Query: 177 MEVP 180
           +E P
Sbjct: 181 LEPP 184

>pdb|2KB0|A Chain A, Cdc42(T35a) Length = 178

Iteration: 1
 Score = 54.7 bits (130), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 39/182 (21%), Positives = 83/182 (45%), Gaps = 23/182 (12%)
Query: 14  SFKILLIGDSGVGKX-XXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQ 72
           + K +++GD  VGK                 P +  ++ + ++ + G+   L ++DTAGQ
Sbjct: 3   TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPAVFDNYAVTVM-IGGEPYTLGLFDTAGQ 61
Query: 73  ERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVK---MLVGNK 129
           E +  L    Y      ++ + V    +F N+ + W  E+        C K   +LVG +
Sbjct: 62  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVGTQ 116
Query: 130 VD------------RDSERVVSREEGIALAKEHGSL-FLECSAKTRENVEQCFEQLALKI 176
           +D            ++ ++ ++ E    LA++  ++ ++ECSA T++ ++  F++  L  
Sbjct: 117 IDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAA 176
Query: 177 ME 178
           +E
Sbjct: 177 LE 178

>pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In Trans State Soaked With Calcium Length = 497

Iteration: 1
 Score = 54.7 bits (130), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
Query: 15  FKILLIGDSGVGKXXXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER 74
            +IL++G    GK                PT+G + +    TV  K +K  +WD  GQ++
Sbjct: 323 MRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVE----TVTYKNVKFNVWDVGGQDK 378
Query: 75  FRTLTSSYYRGAQGIILVYDVTRRE 99
            R L   YY G QG+I V D   R+
Sbjct: 379 IRPLWRHYYTGTQGLIFVVDCADRD 403

>pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between Cdc42 And Nucleotide Exchange Domains Of Intersectin Length = 178

Iteration: 1
 Score = 54.7 bits (130), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 40/182 (21%), Positives = 83/182 (45%), Gaps = 23/182 (12%)
Query: 14  SFKILLIGDSGVGKX-XXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQ 72
           + K +++GD  VGK                 PT+  ++ + ++ + G+   L + DTAGQ
Sbjct: 3   TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLRDTAGQ 61
Query: 73  ERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVK---MLVGNK 129
           E +  L    Y      ++ + V    +F N+ + W  E+        C K   +LVG +
Sbjct: 62  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVGTQ 116
Query: 130 VD------------RDSERVVSREEGIALAKEHGSL-FLECSAKTRENVEQCFEQLALKI 176
           +D            ++ ++ ++ E    LA++  ++ ++ECSA T++ ++  F++  L  
Sbjct: 117 IDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAA 176
Query: 177 ME 178
           +E
Sbjct: 177 LE 178

>pdb|3Q72|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex Length = 166

Iteration: 1
 Score = 54.7 bits (130), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 48/164 (29%), Positives = 70/164 (42%), Gaps = 6/164 (3%)
Query: 15  FKILLIGDSGVGKXXXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER 74
           +K+LL+G  GVGK                   G  +  + + V G+   L ++D   Q+ 
Sbjct: 3   YKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYD-RSIVVDGEEASLMVYDIWEQDG 61
Query: 75  FRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQ--DCVKMLVGNKVDR 132
            R L           ++VY VT + +F   S++    V L    Q  D   +LVGNK D 
Sbjct: 62  GRWLPGHCMAMGDAYVIVYSVTDKGSFEKASEL---RVQLRRARQTDDVPIILVGNKSDL 118
Query: 133 DSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKI 176
              R VS +EG A A      F+E SA    NV+  FE +  +I
Sbjct: 119 VRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQI 162

>pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens) Length = 177

Iteration: 1
 Score = 54.7 bits (130), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 39/181 (21%), Positives = 82/181 (45%), Gaps = 23/181 (12%)
Query: 14  SFKILLIGDSGVGKX-XXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQ 72
           + K +++GD  VGK                 PT+  ++ + ++ + G+   L ++DTAGQ
Sbjct: 3   TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQ 61
Query: 73  ERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVK---MLVGNK 129
           E +  L    Y      ++ + V    +F N+ + W  E+        C K   +LVG +
Sbjct: 62  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVGTQ 116
Query: 130 VD------------RDSERVVSREEGIALAKEHGSL-FLECSAKTRENVEQCFEQLALKI 176
           +D            ++ ++ ++ E    LA++  ++ ++ECSA T+  ++  F++  L  
Sbjct: 117 IDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVFDEAILAA 176
Query: 177 M 177
           +
Sbjct: 177 L 177

>pdb|2GJS|A Chain A, The Crystal Structure Of Human Rrad In Complex With Gdp Length = 176

Iteration: 1
 Score = 54.7 bits (130), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 48/164 (29%), Positives = 70/164 (42%), Gaps = 6/164 (3%)
Query: 15  FKILLIGDSGVGKXXXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER 74
           +K+LL+G  GVGK                   G  +  + + V G+   L ++D   Q+ 
Sbjct: 8   YKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYD-RSIVVDGEEASLMVYDIWEQDG 66
Query: 75  FRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQ--DCVKMLVGNKVDR 132
            R L           ++VY VT + +F   S++    V L    Q  D   +LVGNK D 
Sbjct: 67  GRWLPGHCMAMGDAYVIVYSVTDKGSFEKASEL---RVQLRRARQTDDVPIILVGNKSDL 123
Query: 133 DSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKI 176
              R VS +EG A A      F+E SA    NV+  FE +  +I
Sbjct: 124 VRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQI 167

>pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase Length = 174

Iteration: 1
 Score = 54.3 bits (129), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 48/164 (29%), Positives = 70/164 (42%), Gaps = 6/164 (3%)
Query: 15  FKILLIGDSGVGKXXXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER 74
           +K+LL+G  GVGK                   G  +  + + V G+   L ++D   Q+ 
Sbjct: 8   YKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYD-RSIVVDGEEASLMVYDIWEQDG 66
Query: 75  FRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQ--DCVKMLVGNKVDR 132
            R L           ++VY VT + +F   S++    V L    Q  D   +LVGNK D 
Sbjct: 67  GRWLPGHCMAMGDAYVIVYSVTDKGSFEKASEL---RVQLRRARQTDDVPIILVGNKSDL 123
Query: 133 DSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKI 176
              R VS +EG A A      F+E SA    NV+  FE +  +I
Sbjct: 124 VRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQI 167

>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex Length = 160

Iteration: 1
 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
Query: 15 FKILLIGDSGVGKXXXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER 74
           +IL++G    GK                PT+G + +    TV  K +K  +WD  GQ++
Sbjct: 1  MRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVE----TVTYKNVKFNVWDVGGQDK 56
Query: 75 FRTLTSSYYRGAQGIILVYDVTRRE 99
           R L   YY G QG+I V D   R+
Sbjct: 57 IRPLWRHYYTGTQGLIFVVDCADRD 81

>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp Length = 174

Iteration: 1
 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
Query: 15 FKILLIGDSGVGKXXXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER 74
           +IL++G    GK                PT+G + +    TV  K +K  +WD  GQ++
Sbjct: 13 MRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVE----TVTYKNVKFNVWDVGGQDK 68
Query: 75 FRTLTSSYYRGAQGIILVYDVTRRE 99
           R L   YY G QG+I V D   R+
Sbjct: 69 IRPLWRHYYTGTQGLIFVVDCADRD 93

>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By Human Arf6-Gtp Length = 175

Iteration: 1
 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
Query: 15 FKILLIGDSGVGKXXXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER 74
           +IL++G    GK                PT+G + +    TV  K +K  +WD  GQ++
Sbjct: 14 MRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVE----TVTYKNVKFNVWDVGGQDK 69
Query: 75 FRTLTSSYYRGAQGIILVYDVTRRE 99
           R L   YY G QG+I V D   R+
Sbjct: 70 IRPLWRHYYTGTQGLIFVVDCADRD 94

>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp Length = 162

Iteration: 1
 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
Query: 15 FKILLIGDSGVGKXXXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER 74
           +IL++G    GK                PT+G + +    TV  K +K  +WD  GQ++
Sbjct: 1  MRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVE----TVTYKNVKFNVWDVGGQDK 56
Query: 75 FRTLTSSYYRGAQGIILVYDVTRRE 99
           R L   YY G QG+I V D   R+
Sbjct: 57 IRPLWRHYYTGTQGLIFVVDCADRD 81

>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein Length = 329

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
Query: 15  FKILLIGDSGVGKXXXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER 74
            +IL++G    GK                PTIG + +    TV  K +  T+WD  GQ++
Sbjct: 166 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE----TVEYKNISFTVWDVGGQDK 221
Query: 75  FRTLTSSYYRGAQGIILVYDVTRRE 99
            R L   Y++  QG+I V D   RE
Sbjct: 222 IRPLWRHYFQNTQGLIFVVDSNDRE 246

>pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5 Length = 192

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/125 (28%), Positives = 54/125 (43%), Gaps = 5/125 (4%)
Query: 15  FKILLIGDSGVGKXXXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER 74
            +IL++G    GK                PTIG + +    TV  K +  T+WD  GQ++
Sbjct: 30  MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE----TVEYKNICFTVWDVGGQDK 85
Query: 75  FRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDS 134
            R L   Y++  QG+I V D   RE     +D   K +      +D V ++  NK D  +
Sbjct: 86  IRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQ-EDELRDAVLLVFANKQDMPN 144
Query: 135 ERVVS 139
              VS
Sbjct: 145 AMPVS 149

>pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With Brefeldin A Length = 164

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
Query: 15 FKILLIGDSGVGKXXXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER 74
           +IL++G    GK                PTIG + +    TV  K +  T+WD  GQ++
Sbjct: 1  MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE----TVEYKNISFTVWDVGGQDK 56
Query: 75 FRTLTSSYYRGAQGIILVYDVTRRE 99
           R L   Y++  QG+I V D   RE
Sbjct: 57 IRPLWRHYFQNTQGLIFVVDSNDRE 81

>pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed With Gdp, Dimeric Crystal Form Length = 181

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 39/84 (46%), Gaps = 4/84 (4%)
Query: 16 KILLIGDSGVGKXXXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERF 75
          +IL++G    GK                PTIG + +    TV  K +  T+WD  GQ++ 
Sbjct: 19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE----TVEYKNISFTVWDVGGQDKI 74
Query: 76 RTLTSSYYRGAQGIILVYDVTRRE 99
          R L   Y++  QG+I V D   RE
Sbjct: 75 RPLWRHYFQNTQGLIFVVDSNDRE 98

>pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full Length = 180

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 39/84 (46%), Gaps = 4/84 (4%)
Query: 16 KILLIGDSGVGKXXXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERF 75
          +IL++G    GK                PTIG + +    TV  K +  T+WD  GQ++ 
Sbjct: 18 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE----TVEYKNISFTVWDVGGQDKI 73
Query: 76 RTLTSSYYRGAQGIILVYDVTRRE 99
          R L   Y++  QG+I V D   RE
Sbjct: 74 RPLWRHYFQNTQGLIFVVDSNDRE 97

>pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces Cerevisiae Length = 183

Iteration: 1
 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 67/164 (40%), Gaps = 14/164 (8%)
Query: 15  FKILLIGDSGVGKXXXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER 74
            +IL++G  G GK                PTIG + +    T++ K LKL +WD  GQ  
Sbjct: 19  LRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVE----TLSYKNLKLNVWDLGGQTS 74
Query: 75  FRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTN---QDCVKMLVGNKVD 131
            R     YY     +I V D T ++  +  S    KE+ L       QD   ++  NK D
Sbjct: 75  IRPYWRCYYADTAAVIFVVDSTDKDRMSTAS----KELHLMLQEEELQDAALLVFANKQD 130
Query: 132 RD---SERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQL 172
           +    S   VS+E  +   K+     +  SA   E + +  + L
Sbjct: 131 QPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWL 174

>pdb|3AQ4|A Chain A, Molecular Insights Into Plant Cell Proliferation Disturbance By Agrobacterium Protein 6b Length = 184

Iteration: 1
 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 32/116 (27%), Positives = 51/116 (43%), Gaps = 5/116 (4%)
Query: 16  KILLIGDSGVGKXXXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERF 75
           +IL++G    GK                PTIG + +    TV  K +  T+WD  GQ++ 
Sbjct: 22  RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE----TVEYKNISFTVWDVGGQDKI 77
Query: 76  RTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVD 131
           R L   Y++  QG+I V D   R+      D   + ++     +D V ++  NK D
Sbjct: 78  RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLN-EDELRDAVLLVFANKQD 132

>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp Length = 174

Iteration: 1
 Score = 51.2 bits (121), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 79/178 (44%), Gaps = 15/178 (8%)
Query: 6   GQSNSYDLSFKILLIGDSGVGKXXXXXXXXXXXXXXXX--PTIGVDFKIKLLTVAGKR-- 61
           G  N+Y   ++++LIG+ GVGK                    +G D   + L V G+   
Sbjct: 1   GSGNTY---YRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESAT 57
Query: 62  -LKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQ- 119
            + L +W+  G+  +  L     +     ++VY +T R +F   S++    + L    Q 
Sbjct: 58  IILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASEL---RIQLRRARQT 112
Query: 120 -DCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKI 176
            D   +LVGNK D    R VS  EG A A      F+E SA  + NV++ FE +  ++
Sbjct: 113 EDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQV 170

>pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba Histolytica Hm- 1:imss Bound To Mg-Gdp Length = 178

Iteration: 1
 Score = 51.2 bits (121), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 38/85 (44%), Gaps = 4/85 (4%)
Query: 15 FKILLIGDSGVGKXXXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER 74
           +IL++G    GK                PTIG + +    TV  K +  T+WD  GQ++
Sbjct: 18 MRILMVGLDAAGKTSILYKLKLGEIVTTIPTIGFNVE----TVEYKNISFTVWDVGGQDK 73
Query: 75 FRTLTSSYYRGAQGIILVYDVTRRE 99
           R L   YY+  Q II V D   R+
Sbjct: 74 IRPLWRHYYQNTQAIIFVVDSNDRD 98

>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex Length = 162

Iteration: 1
 Score = 51.2 bits (121), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 38/84 (45%), Gaps = 4/84 (4%)
Query: 16 KILLIGDSGVGKXXXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERF 75
          +IL +G    GK                PT+G + +    TV  K +K  +WD  GQ++ 
Sbjct: 2  RILXLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVE----TVTYKNVKFNVWDVGGQDKI 57
Query: 76 RTLTSSYYRGAQGIILVYDVTRRE 99
          R L   YY G QG+I V D   R+
Sbjct: 58 RPLWRHYYTGTQGLIFVVDCADRD 81

>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem Length = 211

Iteration: 1
 Score = 50.8 bits (120), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 50/180 (27%), Positives = 80/180 (44%), Gaps = 15/180 (8%)
Query: 4   SSGQSNSYDLSFKILLIGDSGVGKXXXXXXXXXXXXXXXX--PTIGVDFKIKLLTVAGKR 61
           SS   N+Y   ++++LIG+ GVGK                    +G D   + L V G+ 
Sbjct: 30  SSESGNTY---YRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGES 86
Query: 62  ---LKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTN 118
              + L +W+  G+  +  L     +     ++VY +T R +F   S++    + L    
Sbjct: 87  ATIILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASEL---RIQLRRAR 141
Query: 119 Q--DCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKI 176
           Q  D   +LVGNK D    R VS  EG A A      F+E SA  + NV++ FE +  ++
Sbjct: 142 QTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQV 201

>pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A Specific Effector, Jip4 Length = 165

Iteration: 1
 Score = 50.8 bits (120), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 26/87 (29%), Positives = 39/87 (44%), Gaps = 4/87 (4%)
Query: 13 LSFKILLIGDSGVGKXXXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQ 72
          +  +IL++G    GK                PT+G + +    TV  K +K  +WD  G 
Sbjct: 2  MEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVE----TVTYKNVKFNVWDVGGL 57
Query: 73 ERFRTLTSSYYRGAQGIILVYDVTRRE 99
          ++ R L   YY G QG+I V D   R+
Sbjct: 58 DKIRPLWRHYYTGTQGLIFVVDCADRD 84

>pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like Protein 1) Complex Length = 172

Iteration: 1
 Score = 50.8 bits (120), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 26/87 (29%), Positives = 39/87 (44%), Gaps = 4/87 (4%)
Query: 13 LSFKILLIGDSGVGKXXXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQ 72
          +  +IL++G    GK                PT+G + +    TV  K +K  +WD  G 
Sbjct: 1  MEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVE----TVTYKNVKFNVWDVGGL 56
Query: 73 ERFRTLTSSYYRGAQGIILVYDVTRRE 99
          ++ R L   YY G QG+I V D   R+
Sbjct: 57 DKIRPLWRHYYTGTQGLIFVVDCADRD 83

>pdb|1J2J|A Chain A, Crystal Structure Of Gga1 Gat N-terminal Region In Complex With Arf1 Gtp Form Length = 166

Iteration: 1
 Score = 50.8 bits (120), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 39/86 (45%), Gaps = 4/86 (4%)
Query: 14 SFKILLIGDSGVGKXXXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQE 73
          S +IL++G    GK                PTIG + +    TV  K +  T+WD  G +
Sbjct: 2  SMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE----TVEYKNISFTVWDVGGLD 57
Query: 74 RFRTLTSSYYRGAQGIILVYDVTRRE 99
          + R L   Y++  QG+I V D   RE
Sbjct: 58 KIRPLWRHYFQNTQGLIFVVDSNDRE 83

>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In Complex To Mg.Gdp Length = 192

Iteration: 1
 Score = 50.8 bits (120), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 76/169 (44%), Gaps = 12/169 (7%)
Query: 15  FKILLIGDSGVGKXXXXXXXX--XXXXXXXXPTIGVDFKIKLLTVAGKR---LKLTIWDT 69
           ++++LIG+ GVGK                    +G D   + L V G+    + L +W+ 
Sbjct: 7   YRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWEN 66
Query: 70  AGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQ--DCVKMLVG 127
            G+  +  L     +     ++VY +T R +F   S++    + L    Q  D   +LVG
Sbjct: 67  KGENEW--LHDHXMQVGDAYLIVYSITDRASFEKASEL---RIQLRRARQTEDIPIILVG 121
Query: 128 NKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKI 176
           NK D    R VS  EG A A      F+E SA  + NV++ FE +  ++
Sbjct: 122 NKSDLVRXREVSVSEGRAXAVVFDCKFIETSAAVQHNVKELFEGIVRQV 170

>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In Complex To Mg.Gdp Length = 192

Iteration: 1
 Score = 50.4 bits (119), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 76/169 (44%), Gaps = 12/169 (7%)
Query: 15  FKILLIGDSGVGKXXXXXXXX--XXXXXXXXPTIGVDFKIKLLTVAGKR---LKLTIWDT 69
           ++++LIG+ GVGK                    +G D   + L V G+    + L +W+ 
Sbjct: 7   YRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWEN 66
Query: 70  AGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQ--DCVKMLVG 127
            G+  +  L     +     ++VY +T R +F   S++    + L    Q  D   +LVG
Sbjct: 67  KGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASEL---RIQLRRARQTEDIPIILVG 121
Query: 128 NKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKI 176
           NK D    R VS  EG A A      F+E SA  + NV++ FE +  ++
Sbjct: 122 NKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGIVRQV 170

>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp Length = 195

Iteration: 1
 Score = 50.1 bits (118), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 49/180 (27%), Positives = 76/180 (42%), Gaps = 8/180 (4%)
Query: 4   SSGQSNSY-----DLSFKILLIGDSGVGKXXXXXX-XXXXXXXXXXPTIGVDFKIKLLTV 57
           SSG+ N Y     D  FK++L+G+SGVGK                 P    D   + + V
Sbjct: 8   SSGRENLYFQGQKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMV 67
Query: 58  AGKRLKLTIWDTAGQ-ERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYS 116
             + + L ++D   Q +    L     +     ++V+ VT R +F+ + +   + +    
Sbjct: 68  DKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLR-LRAGR 126
Query: 117 TNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKI 176
            + D   +LVGNK D    R VS EEG  LA       +E SA    N  + FE    +I
Sbjct: 127 PHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQI 186

>pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l) Length = 175

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 38/85 (44%), Gaps = 4/85 (4%)
Query: 15 FKILLIGDSGVGKXXXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER 74
           +IL++G    GK                PT+G + +    TV  K +K  +WD  G ++
Sbjct: 14 MRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVE----TVTYKNVKFNVWDVGGLDK 69
Query: 75 FRTLTSSYYRGAQGIILVYDVTRRE 99
           R L   YY G QG+I V D   R+
Sbjct: 70 IRPLWRHYYTGTQGLIFVVDCADRD 94

>pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum Adp-Ribosylation Factor 1 Length = 181

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 4/84 (4%)
Query: 16 KILLIGDSGVGKXXXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERF 75
          +IL++G    GK                PTIG + +    TV  + +  T+WD  GQ++ 
Sbjct: 19 RILMVGLDAAGKTTILYKVKLGEVVTTIPTIGFNVE----TVEFRNISFTVWDVGGQDKI 74
Query: 76 RTLTSSYYRGAQGIILVYDVTRRE 99
          R L   YY    G+I V D   RE
Sbjct: 75 RPLWRHYYSNTDGLIFVVDSNDRE 98

>pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound Conformation Length = 181

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/83 (31%), Positives = 37/83 (44%), Gaps = 4/83 (4%)
Query: 16 KILLIGDSGVGKXXXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERF 75
          +IL++G  G GK                PTIG + +     V    +  T+WD  GQ+R 
Sbjct: 19 RILMVGLDGAGKTTVLYKLKLGEVITTIPTIGFNVE----CVQYCNISFTVWDVGGQDRI 74
Query: 76 RTLTSSYYRGAQGIILVYDVTRR 98
          R+L   YY   +G+I V D   R
Sbjct: 75 RSLWRHYYCNTEGVIFVVDSNDR 97

>pdb|3C5C|A Chain A, Crystal Structure Of Human Ras-Like, Family 12 Protein In Complex With Gdp Length = 187

Iteration: 1
 Score = 47.0 bits (110), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 72/178 (40%), Gaps = 16/178 (8%)
Query: 4   SSGQSNSY---DLSFKILLIGDSGVGKXXXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGK 60
           SSG+ N Y    L   + ++G  G GK                     D      TV  +
Sbjct: 8   SSGRENLYFQGPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQ 67
Query: 61  RLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDV------TRRETFTNLSDVWAKEVDL 114
            + L + DTA  +  R     Y   A   ++VY V          ++  L  + AKE   
Sbjct: 68  PVHLRVMDTADLDTPRN-CERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKE--- 123
Query: 115 YSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSA-KTRENVEQCFEQ 171
             T +    +L+GNK+D    R V++ EG+ALA   G LF E SA    E+V+  F +
Sbjct: 124 --TQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHE 179

>pdb|1YZG|A Chain A, Structure Of Human Adp-ribosylation Factor-like 8 Length = 179

Iteration: 1
 Score = 44.3 bits (103), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 39/171 (22%), Positives = 69/171 (40%), Gaps = 22/171 (12%)
Query: 16  KILLIGDSGVGKXXXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERF 75
           K++++G    GK                PTIG + +     +  K     +WD  GQE  
Sbjct: 18  KVIIVGLDNAGKTTILYQFLMNEVVHTSPTIGSNVE----EIVVKNTHFLMWDIGGQESL 73
Query: 76  RTLTSSYYRGAQGIILVYD--------VTRRETFTNLS--DVWAKEVDLYSTNQDCVKML 125
           R+  ++YY   + IILV D        +T+ E +  L+  D+    V +++  QD    +
Sbjct: 74  RSSWNTYYSNTEFIILVVDSIDRERLAITKEELYRMLAHEDLRKAAVLIFANKQDMKGCM 133
Query: 126 VGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKI 176
              +        +S+   ++  K+H      C A T E + Q  E +  +I
Sbjct: 134 TAAE--------ISKYLTLSSIKDHPWHIQSCCALTGEGLCQGLEWMTSRI 176

>pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1 Length = 192

Iteration: 1
 Score = 43.9 bits (102), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 4/85 (4%)
Query: 15 FKILLIGDSGVGKXXXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER 74
           ++L++G    GK                PT+G + K    T+  +  KL IWD  GQ+ 
Sbjct: 17 LRLLMLGLDNAGKTTILKKFNGEDIDTISPTLGFNIK----TLEHRGFKLNIWDVGGQKS 72
Query: 75 FRTLTSSYYRGAQGIILVYDVTRRE 99
           R+   +Y+    G+I V D   R+
Sbjct: 73 LRSYWRNYFESTDGLIWVVDSADRQ 97

>pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In Complex With Unc119a Length = 189

Iteration: 1
 Score = 43.9 bits (102), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 36/90 (40%), Gaps = 4/90 (4%)
Query: 12  DLSFKILLIGDSGVGKXXXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAG 71
           D   +ILL+G    GK                PT G + K    +V  +  KL +WD  G
Sbjct: 15  DQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIK----SVQSQGFKLNVWDIGG 70
Query: 72  QERFRTLTSSYYRGAQGIILVYDVTRRETF 101
           Q + R    SY+     +I V D   R+ F
Sbjct: 71  QRKIRPYWRSYFENTDILIYVIDSADRKRF 100

>pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1 Length = 186

Iteration: 1
 Score = 43.9 bits (102), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 4/85 (4%)
Query: 15 FKILLIGDSGVGKXXXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER 74
           ++L++G    GK                PT+G + K    T+  +  KL IWD  GQ+ 
Sbjct: 19 LRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIK----TLEHRGFKLNIWDVGGQKS 74
Query: 75 FRTLTSSYYRGAQGIILVYDVTRRE 99
           R+   +Y+    G+I V D   R+
Sbjct: 75 LRSYWRNYFESTDGLIWVVDSADRQ 99

>pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp Length = 181

Iteration: 1
 Score = 43.9 bits (102), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 36/90 (40%), Gaps = 4/90 (4%)
Query: 12  DLSFKILLIGDSGVGKXXXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAG 71
           D   +ILL+G    GK                PT G + K    +V  +  KL +WD  G
Sbjct: 14  DQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIK----SVQSQGFKLNVWDIGG 69
Query: 72  QERFRTLTSSYYRGAQGIILVYDVTRRETF 101
           Q + R    SY+     +I V D   R+ F
Sbjct: 70  QRKIRPYWRSYFENTDILIYVIDSADRKRF 99

>pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native) Length = 186

Iteration: 1
 Score = 43.9 bits (102), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 4/85 (4%)
Query: 15 FKILLIGDSGVGKXXXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER 74
           ++L++G    GK                PT+G + K    T+  +  KL IWD  GQ+ 
Sbjct: 19 LRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIK----TLEHRGFKLNIWDVGGQKS 74
Query: 75 FRTLTSSYYRGAQGIILVYDVTRRE 99
           R+   +Y+    G+I V D   R+
Sbjct: 75 LRSYWRNYFESTDGLIWVVDSADRQ 99

>pdb|1R4A|A Chain A, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor Like Protein 1 (Arl1) And Grip Domain Of Golgin245 Complex Length = 165

Iteration: 1
 Score = 43.5 bits (101), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 34/85 (40%), Gaps = 4/85 (4%)
Query: 15 FKILLIGDSGVGKXXXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER 74
           +IL++G  G GK                PTIG + +    TV  K LK  +WD  GQ  
Sbjct: 3  MRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVE----TVTYKNLKFQVWDLGGQTS 58
Query: 75 FRTLTSSYYRGAQGIILVYDVTRRE 99
           R     YY     +I V D   R+
Sbjct: 59 IRPYWRCYYSNTDAVIYVVDSCDRD 83

>pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex Length = 169

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 66/158 (41%), Gaps = 3/158 (1%)
Query: 15  FKILLIGDSGVGKXXXXXXXXXXXXXXXXPTIGV-DFKIKLLTVAGKRLKLTIWDTAGQ- 72
           FK++L+G+SGVGK                      D   + + V  + + L ++D   Q 
Sbjct: 3   FKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQG 62
Query: 73  ERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDR 132
           +    L     +     ++V+ VT R +F+ + +   + +     + D   +LVGNK D 
Sbjct: 63  DAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLR-LRAGRPHHDLPVILVGNKSDL 121
Query: 133 DSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFE 170
              R VS EEG  LA       +E SA    N  + FE
Sbjct: 122 ARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFE 159

>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c Length = 186

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Query: 44  PTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRE 99
           PT+G + +     V    + + IWD  GQ RFR++   Y RG   I+ + D   RE
Sbjct: 53  PTVGFNMR----KVTKGNVTIKIWDIGGQPRFRSMWERYCRGVNAIVYMIDAADRE 104

>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound To Gdp Length = 180

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 69/167 (41%), Gaps = 3/167 (1%)
Query: 12  DLSFKILLIGDSGVGKXXXXXXXXXXXXXXXXPTIGV-DFKIKLLTVAGKRLKLTIWDTA 70
           D  FK++L+G+SGVGK                      D   + + V  + + L ++D  
Sbjct: 10  DGVFKVMLLGESGVGKSTLAGTFGGLQGDNAHEMENSEDTYERRIMVDKEEVTLIVYDIW 69
Query: 71  GQ-ERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNK 129
            Q +    L     +     ++V+ VT R +F+ + +   + +     + D   +LVGNK
Sbjct: 70  EQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLR-LRAGRPHHDLPVILVGNK 128
Query: 130 VDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKI 176
            D    R VS EEG  LA       +E SA    N  + FE    +I
Sbjct: 129 SDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQI 175

>pdb|3BH7|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gdp-Alf4 Length = 164

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 35/86 (40%), Gaps = 4/86 (4%)
Query: 16  KILLIGDSGVGKXXXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERF 75
           +ILL+G    GK                PT G + K    +V  +  KL +WD  GQ + 
Sbjct: 6   RILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIK----SVQSQGFKLNVWDIGGQRKI 61
Query: 76  RTLTSSYYRGAQGIILVYDVTRRETF 101
           R    SY+     +I V D   R+ F
Sbjct: 62  RPYWRSYFENTDILIYVIDSADRKRF 87

>pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5) Length = 183

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 4/84 (4%)
Query: 16  KILLIGDSGVGKXXXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERF 75
           K++++G    GK                PTIG + +     +     +  +WD  GQE  
Sbjct: 24  KVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVE----EIVINNTRFLMWDIGGQESL 79
Query: 76  RTLTSSYYRGAQGIILVYDVTRRE 99
           R+  ++YY   + +I+V D T RE
Sbjct: 80  RSSWNTYYTNTEFVIVVVDSTDRE 103

>pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5) (Casp Target) Length = 181

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 4/84 (4%)
Query: 16  KILLIGDSGVGKXXXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERF 75
           K++++G    GK                PTIG + +     +     +  +WD  GQE  
Sbjct: 23  KVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVE----EIVINNTRFLMWDIGGQESL 78
Query: 76  RTLTSSYYRGAQGIILVYDVTRRE 99
           R+  ++YY   + +I+V D T RE
Sbjct: 79  RSSWNTYYTNTEFVIVVVDSTDRE 102

>pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5 Length = 187

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 4/84 (4%)
Query: 16 KILLIGDSGVGKXXXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERF 75
          K++++G    GK                PTIG + +     +     +  +WD  GQE  
Sbjct: 18 KVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVE----EIVINNTRFLMWDIGGQESL 73
Query: 76 RTLTSSYYRGAQGIILVYDVTRRE 99
          R+  ++YY   + +I+V D T RE
Sbjct: 74 RSSWNTYYTNTEFVIVVVDSTDRE 97

>pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 Length = 179

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 4/84 (4%)
Query: 16 KILLIGDSGVGKXXXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERF 75
          K++++G    GK                PTIG + +     +     +  +WD  GQE  
Sbjct: 18 KVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVE----EIVINNTRFLMWDIGGQESL 73
Query: 76 RTLTSSYYRGAQGIILVYDVTRRE 99
          R+  ++YY   + +I+V D T RE
Sbjct: 74 RSSWNTYYTNTEFVIVVVDSTDRE 97

>pdb|1KSJ|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Semet) Length = 186

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Query: 44 PTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRE 99
          PT+G  F IK L   G   KL IWD  GQ+  R+   +Y+    G+I V D   R+
Sbjct: 48 PTLG--FNIKTLEHRG--FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQ 99

>pdb|4GOK|B Chain B, The Crystal Structure Of Arl2gppnhp In Complex With Unc119a Length = 169

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 22/85 (25%), Positives = 36/85 (42%), Gaps = 4/85 (4%)
Query: 15 FKILLIGDSGVGKXXXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER 74
           ++L++G    GK                PT+G + K    T+  +  KL IWD  G + 
Sbjct: 2  LRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIK----TLEHRGFKLNIWDVGGLKS 57
Query: 75 FRTLTSSYYRGAQGIILVYDVTRRE 99
           R+   +Y+    G+I V D   R+
Sbjct: 58 LRSYWRNYFESTDGLIWVVDSADRQ 82

>pdb|4DCN|A Chain A, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In Complex With Arl1 Length = 166

Iteration: 1
 Score = 40.4 bits (93), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 33/85 (38%), Gaps = 4/85 (4%)
Query: 15 FKILLIGDSGVGKXXXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER 74
           +IL++G  G GK                PTIG + +    TV  K LK  +WD  G   
Sbjct: 5  MRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVE----TVTYKNLKFQVWDLGGLTS 60
Query: 75 FRTLTSSYYRGAQGIILVYDVTRRE 99
           R     YY     +I V D   R+
Sbjct: 61 IRPYWRCYYSNTDAVIYVVDSCDRD 85

>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b Length = 188

Iteration: 1
 Score = 40.4 bits (93), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 44  PTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRE 99
           PT+G  F ++ +T     +KL  WD  GQ RFR++   Y RG   I+ + D   +E
Sbjct: 53  PTVG--FNMRKITKGNVTIKL--WDIGGQPRFRSMWERYCRGVSAIVYMVDAADQE 104

>pdb|2H57|A Chain A, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6 Length = 190

Iteration: 1
 Score = 40.4 bits (93), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Query: 44  PTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRR 98
           PTIG  F I+        L  T++D +GQ R+R L   YY+  Q II V D + R
Sbjct: 53  PTIG--FSIE--KFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDR 103

>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b (Arl10b) Length = 193

Iteration: 1
 Score = 40.4 bits (93), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 44  PTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRE 99
           PT+G  F ++ +T     +KL  WD  GQ RFR++   Y RG   I+ + D   +E
Sbjct: 62  PTVG--FNMRKITKGNVTIKL--WDIGGQPRFRSMWERYCRGVSAIVYMVDAADQE 113

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	211
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	1e-100
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	1e-97
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	4e-97
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	7e-97
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	4e-96
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	6e-96
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	6e-96
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	9e-96
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	1e-95
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	2e-95
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	2e-95
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	7e-95
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	3e-94
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	3e-94
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	3e-94
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	4e-94
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	1e-93
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	1e-93
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	1e-93
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	1e-93
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	2e-93
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	2e-93
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	5e-93
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	1e-92
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	2e-92
3bbp_A	211	RAB-6, RAS-related protein RAB-6A; golgi complex,	2e-91
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	4e-91
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	1e-90
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	1e-90
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	1e-90
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	2e-90
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	2e-89
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	4e-89
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	6e-88
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	7e-88
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	2e-87
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	3e-87
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	3e-87
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	4e-86
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	3e-84
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	6e-84
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	2e-82
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	1e-79
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	1e-77
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	2e-77
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	4e-77
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	3e-76
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	9e-75
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	2e-74
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	2e-74
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	2e-74
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	8e-74
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	5e-73
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	9e-73
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	2e-72
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	2e-72
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	2e-71
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	3e-71
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	1e-70
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	6e-70
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	2e-69
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	3e-67
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	6e-67
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	5e-66
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	2e-64
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	3e-62
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	4e-61
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	4e-61
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	2e-59
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	2e-55
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	1e-52
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	5e-49
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	1e-47
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	1e-47
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	2e-47
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	2e-44
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	7e-44
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	1e-43
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	1e-43
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	3e-43
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	2e-41
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	4e-41
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	5e-41
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	1e-30
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	4e-28
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	1e-26
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	3e-19
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	4e-19
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	1e-18
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	3e-18
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	9e-18
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	1e-17
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	1e-17
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	4e-17
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	5e-17
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	5e-17
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	5e-17
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	1e-16
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	4e-16
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	5e-16
3llu_A	196	RAS-related GTP-binding protein C; structural geno	4e-15
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	5e-14
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	2e-13
2fh5_B	214	SR-beta, signal recognition particle receptor beta	4e-12
2ged_A	193	SR-beta, signal recognition particle receptor beta	6e-11
1nrj_B	218	SR-beta, signal recognition particle receptor beta	6e-10
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	1e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-09
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	3e-06
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	2e-05
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	9e-05
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	2e-04
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	3e-04

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 Length = 195

 Score =  286 bits (735), Expect = e-100
 Identities = 101/188 (53%), Positives = 130/188 (69%), Gaps = 3/188 (1%)

Query: 2   GSSSGQSNSYDLSFKILLIGDSGVGKSSLLVSFISSS-VDDLSPTIGVDFKIKLLTVAGK 60
             SSG       + KIL+IG+SGVGKSSLL+ F   +   +L+ TIGVDFK+K ++V G 
Sbjct: 3   SGSSGMDEDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGN 62

Query: 61  RLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQD 120
           + KL IWDTAGQERFRTLT SYYRGAQG+ILVYDVTRR+TF  L + W  E++ Y T  D
Sbjct: 63  KAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDN-WLNELETYCTRND 121

Query: 121 CVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIMEVP 180
            V MLVGNK+D++  R V R EG+  A++H  LF+E SAKT + V+  FE+L  KI++ P
Sbjct: 122 IVNMLVGNKIDKE-NREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTP 180

Query: 181 SLLEEGSN 188
            L E  + 
Sbjct: 181 GLWESENQ 188

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* Length = 206

 Score =  281 bits (720), Expect = 1e-97
 Identities = 93/207 (44%), Positives = 124/207 (59%), Gaps = 6/207 (2%)

Query: 8   SNSYDLSFKILLIGDSGVGKSSLLVSFISSS-VDDLSPTIGVDFKIKLLTVAGKRLKLTI 66
           ++ YD  FK+LLIG+SGVGKS LL+ F   +  +D   TIGVDFKIK + + GK +KL I
Sbjct: 2   NSEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQI 61

Query: 67  WDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLV 126
           WDTAGQERFRT+TSSYYRG+ GII+VYDVT +E+F  +   W +E+D Y+     +K+LV
Sbjct: 62  WDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKM-WLQEIDRYA-TSTVLKLLV 119

Query: 127 GNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIMEVPSLLEEG 186
           GNK D   +RVV  +     A  +   FLE SA    NVE  F  +A +I E  S     
Sbjct: 120 GNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLN 179

Query: 187 SNVVK---RNILKQKPENQSPPIGGCC 210
               K   +  +  K ++ +   G CC
Sbjct: 180 ETTQKKEDKGNVNLKGQSLTNTGGCCC 206

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} Length = 196

 Score =  279 bits (717), Expect = 4e-97
 Identities = 94/195 (48%), Positives = 123/195 (63%), Gaps = 3/195 (1%)

Query: 1   MGSSSGQSNSYDLSFKILLIGDSGVGKSSLLVSFISSS-VDDLSPTIGVDFKIKLLTVAG 59
           +GS S  +  YD  FK+LLIGDSGVGKS LL+ F   +  +    TIGVDFKI+ + + G
Sbjct: 3   LGSMSSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDG 62

Query: 60  KRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQ 119
           K +KL IWDTAGQERFRT+TSSYYRGA GII+VYDVT +E+F N+   W +E+D Y+ ++
Sbjct: 63  KTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLQEIDRYA-SE 120

Query: 120 DCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIMEV 179
           +  K+LVGNK D  +++VV        A   G  FLE SAK   NVEQ F  +A +I + 
Sbjct: 121 NVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKR 180

Query: 180 PSLLEEGSNVVKRNI 194
                      K N+
Sbjct: 181 MGPGATAGGAEKSNV 195

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 Length = 203

 Score =  279 bits (716), Expect = 7e-97
 Identities = 87/201 (43%), Positives = 120/201 (59%), Gaps = 5/201 (2%)

Query: 8   SNSYDLSFKILLIGDSGVGKSSLLVSFISSS-VDDLSPTIGVDFKIKLLTVAGKRLKLTI 66
           S+ +D  FKIL+IG+S VGK+S L  +   S       T+G+DFK+K +    KR+KL I
Sbjct: 2   SHMFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQI 61

Query: 67  WDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLV 126
           WDTAG ER+RT+T++YYRGA G IL+YD+T  E+F  + D W+ ++  YS   +   +LV
Sbjct: 62  WDTAGLERYRTITTAYYRGAMGFILMYDITNEESFNAVQD-WSTQIKTYS-WDNAQVLLV 119

Query: 127 GNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIMEVPSLLEEG 186
           GNK D + ERVVS E G  LA   G  F E SAK   NV+Q FE+L   I E  S   + 
Sbjct: 120 GNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKMSESLDT 179

Query: 187 SNVVKRNILK--QKPENQSPP 205
           ++       +  Q  + Q+PP
Sbjct: 180 ADPAVTGAKQGPQLTDQQAPP 200

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 180

 Score =  276 bits (708), Expect = 4e-96
 Identities = 81/175 (46%), Positives = 115/175 (65%), Gaps = 4/175 (2%)

Query: 6   GQSNSYDLSFKILLIGDSGVGKSSLLVSFISSS--VDDLSPTIGVDFKIKLLTVAGKRLK 63
              + YD++FK++L+GDSGVGK+ LLV F   +        T+G+DF+ K+L V G ++K
Sbjct: 2   SGVDFYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVK 61

Query: 64  LTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVK 123
           L +WDTAGQERFR++T +YYR A  ++L+YDVT + +F N+   W  E+  Y+   D   
Sbjct: 62  LQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQA-WLTEIHEYA-QHDVAL 119

Query: 124 MLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIME 178
           ML+GNKVD   ERVV RE+G  LAKE+G  F+E SAKT  NV+  F  +A ++  
Sbjct: 120 MLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELKR 174

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* Length = 179

 Score =  276 bits (708), Expect = 6e-96
 Identities = 84/177 (47%), Positives = 116/177 (65%), Gaps = 3/177 (1%)

Query: 3   SSSGQSNSYDLSFKILLIGDSGVGKSSLLVSFISSS-VDDLSPTIGVDFKIKLLTVAGKR 61
            S+    +Y   FK ++IGD GVGKS LL  F     + D   TIGV+F  +++ V+G++
Sbjct: 4   GSATAPYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQK 63

Query: 62  LKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDC 121
           +KL IWDTAGQERFR +T SYYRGA G ++VYD+TRR T+ +LS  W  +    + N + 
Sbjct: 64  IKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSS-WLTDARNLT-NPNT 121

Query: 122 VKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIME 178
           V +L+GNK D +++R V+ EE    A+E+G LFLE SAKT ENVE  F + A KI +
Sbjct: 122 VIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQ 178

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} Length = 191

 Score =  276 bits (708), Expect = 6e-96
 Identities = 79/180 (43%), Positives = 112/180 (62%), Gaps = 3/180 (1%)

Query: 3   SSSGQSNSYDLSFKILLIGDSGVGKSSLLVSFISSS-VDDLSPTIGVDFKIKLLTVAGKR 61
            +     ++D  FK+L+IG+S VGK+S L  +   +       T+G+DFK+K +    KR
Sbjct: 12  ENLYFQGNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKR 71

Query: 62  LKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDC 121
           +KL IWDTAGQER+RT+T++YYRGA G IL+YD+T  E+F  + D WA ++  YS   + 
Sbjct: 72  VKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQD-WATQIKTYS-WDNA 129

Query: 122 VKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIMEVPS 181
             +LVGNK D + ERVV  E+G  LA++ G  F E SAK   +V Q FE+L   I +  S
Sbjct: 130 QVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAICDKMS 189

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* Length = 189

 Score =  276 bits (707), Expect = 9e-96
 Identities = 84/187 (44%), Positives = 113/187 (60%), Gaps = 11/187 (5%)

Query: 1   MGSSSGQSNS--------YDLSFKILLIGDSGVGKSSLLVSFISSS-VDDLSPTIGVDFK 51
           MGSS    +          D  FK+LLIG+S VGK+S L  +   S       T+G+DFK
Sbjct: 1   MGSSHHHHHHSSGLVPRGSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFK 60

Query: 52  IKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKE 111
           +K +    KR+KL IWDTAGQER+RT+T++YYRGA G +L+YD+  +E+F  + D WA +
Sbjct: 61  VKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQD-WATQ 119

Query: 112 VDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQ 171
           +  YS   +   +LVGNK D + ERVV  E+G  LA + G  F E SAK   NV+Q FE+
Sbjct: 120 IKTYS-WDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFER 178

Query: 172 LALKIME 178
           L   I E
Sbjct: 179 LVDVICE 185

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} Length = 199

 Score =  276 bits (707), Expect = 1e-95
 Identities = 90/178 (50%), Positives = 117/178 (65%), Gaps = 3/178 (1%)

Query: 2   GSSSGQSNSYDLSFKILLIGDSGVGKSSLLVSFISSS-VDDLSPTIGVDFKIKLLTVAGK 60
              S  +  YD  FK+LLIGDSGVGKS LL+ F   +  +    TIGVDFKI+ + + GK
Sbjct: 21  RPMSSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGK 80

Query: 61  RLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQD 120
            +KL IWDTAGQERFRT+TSSYYRGA GII+VYDVT +E+F N+   W +E+D Y+ +++
Sbjct: 81  TIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLQEIDRYA-SEN 138

Query: 121 CVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIME 178
             K+LVGNK D  +++VV        A   G  FLE SAK   NVEQ F  +A +I +
Sbjct: 139 VNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKK 196

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* Length = 191

 Score =  275 bits (706), Expect = 2e-95
 Identities = 75/176 (42%), Positives = 108/176 (61%), Gaps = 3/176 (1%)

Query: 2   GSSSGQSNSYDLSFKILLIGDSGVGKSSLLVSFISSS-VDDLSPTIGVDFKIKLLTVAGK 60
            +   + + YD  FK++LIGDSGVGKS+LL  F  +    +   TIGV+F  + + V GK
Sbjct: 17  RAMGTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGK 76

Query: 61  RLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQD 120
            +K  IWDTAG ER+R +TS+YYRGA G +LVYD+ +  T+ N+   W KE+  ++ + +
Sbjct: 77  TIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVER-WLKELRDHA-DSN 134

Query: 121 CVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKI 176
            V MLVGNK D    R V  +E  A A+++G  F+E SA    NVE  F+ +  +I
Sbjct: 135 IVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 190

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} Length = 181

 Score =  274 bits (703), Expect = 2e-95
 Identities = 78/172 (45%), Positives = 108/172 (62%), Gaps = 4/172 (2%)

Query: 8   SNSYDLSFKILLIGDSGVGKSSLLVSFISSS-VDDLSPTIGVDFKIKLLTVAGKRLKLTI 66
           +  YD  FK+L+IGDSGVGKSSLL+ F  ++       TIGVDFKI+ + + G+++KL I
Sbjct: 3   ARDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQI 62

Query: 67  WDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLV 126
           WDTAGQERFRT+TS+YYRG  G+I+VYDVT  E+F N+   W  E++    +    ++LV
Sbjct: 63  WDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKR-WLHEINQNCDD--VCRILV 119

Query: 127 GNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIME 178
           GNK D    +VV  E+    A + G    E SAK   NVE+ F  +   ++ 
Sbjct: 120 GNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLR 171

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* Length = 189

 Score =  273 bits (701), Expect = 7e-95
 Identities = 66/180 (36%), Positives = 93/180 (51%), Gaps = 6/180 (3%)

Query: 4   SSGQSNSYDLSFKILLIGDSGVGKSSLLVSFISSS-VDDLSPTIGVDFKIKLLTVAGKRL 62
           S     S    FKI++IGDS VGK+ L   F +    D    TIGVDF+ + + + G+R+
Sbjct: 10  SLVPRGSRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERI 69

Query: 63  KLTIWDTAGQERFR-TLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDC 121
           K+ +WDTAGQERFR ++   YYR    ++ VYD+T   +F +L   W +E   +    D 
Sbjct: 70  KIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPA-WIEECKQHLLANDI 128

Query: 122 VKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTR---ENVEQCFEQLALKIME 178
            ++LVGNK D  S   V  +     A  H     E SAK     ++VE  F  LA K+  
Sbjct: 129 PRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKLKS 188

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 201

 Score =  272 bits (698), Expect = 3e-94
 Identities = 74/177 (41%), Positives = 108/177 (61%), Gaps = 3/177 (1%)

Query: 3   SSSGQSNSYDLSFKILLIGDSGVGKSSLLVSFISSS-VDDLSPTIGVDFKIKLLTVAGKR 61
              G    YD  FKI+LIG++GVGK+ L+  F           TIGVDF IK + + G++
Sbjct: 15  VPRGSMEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEK 74

Query: 62  LKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDC 121
           +KL IWDTAGQERFR++T SYYR A  +IL YD+T  E+F  L + W +E++ Y+ +   
Sbjct: 75  VKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPE-WLREIEQYA-SNKV 132

Query: 122 VKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIME 178
           + +LVGNK+D    R VS++     ++     +LE SAK  +NVE+ F  LA +++ 
Sbjct: 133 ITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLIS 189

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* Length = 191

 Score =  272 bits (697), Expect = 3e-94
 Identities = 90/186 (48%), Positives = 119/186 (63%), Gaps = 10/186 (5%)

Query: 1   MGSS-------SGQSNSYDLSFKILLIGDSGVGKSSLLVSFISSS-VDDLSPTIGVDFKI 52
           MGSS       SG        FK ++IGD+GVGKS LL+ F           TIGV+F  
Sbjct: 1   MGSSHHHHHHSSGLVPRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGA 60

Query: 53  KLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEV 112
           +++ + GK++KL IWDTAGQE FR++T SYYRGA G +LVYD+TRRETF +L+  W ++ 
Sbjct: 61  RMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTS-WLEDA 119

Query: 113 DLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQL 172
             +S + + V ML+GNK D +S R V REEG A A+EHG +F+E SAKT  NVE+ F   
Sbjct: 120 RQHS-SSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINT 178

Query: 173 ALKIME 178
           A +I  
Sbjct: 179 AKEIYR 184

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} Length = 192

 Score =  272 bits (697), Expect = 3e-94
 Identities = 76/179 (42%), Positives = 118/179 (65%), Gaps = 4/179 (2%)

Query: 2   GSSSGQSNSYDLSFKILLIGDSGVGKSSLLVSFISSS-VDDLSPTIGVDFKIKLLTVAGK 60
               G     D   ++++IG  GVGK+SL+  F   +  +    T+GVDFKIK + + GK
Sbjct: 14  LVPRGSPRPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGK 73

Query: 61  RLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQD 120
           +++L IWDTAGQERF ++TS+YYR A+GIILVYD+T++ETF +L   W K +D Y+ ++D
Sbjct: 74  KIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPK-WMKMIDKYA-SED 131

Query: 121 CVKMLVGNKVDRDSERVVSREEGIALAKE-HGSLFLECSAKTRENVEQCFEQLALKIME 178
              +LVGNK+D +++R ++R++G   A++  G  F E SAK   NV++ F +L   I++
Sbjct: 132 AELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILK 190

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* Length = 183

 Score =  271 bits (696), Expect = 4e-94
 Identities = 83/172 (48%), Positives = 117/172 (68%), Gaps = 3/172 (1%)

Query: 8   SNSYDLSFKILLIGDSGVGKSSLLVSFISSS-VDDLSPTIGVDFKIKLLTVAGKRLKLTI 66
           + +YD  FK+LLIGDSGVGK+ +L  F   +       TIG+DFKI+ + + GKR+KL I
Sbjct: 2   AKTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQI 61

Query: 67  WDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLV 126
           WDTAGQERFRT+T++YYRGA GI+LVYD+T  ++F N+ + W + ++ ++ + D  KM++
Sbjct: 62  WDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRN-WIRNIEEHA-SADVEKMIL 119

Query: 127 GNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIME 178
           GNK D + +R VS+E G  LA ++G  F+E SAK   NVE  F  LA  I  
Sbjct: 120 GNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKA 171

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} Length = 193

 Score =  271 bits (694), Expect = 1e-93
 Identities = 74/178 (41%), Positives = 103/178 (57%), Gaps = 3/178 (1%)

Query: 2   GSSSGQSNSYDLSFKILLIGDSGVGKSSLLVSFISSS-VDDLSPTIGVDFKIKLLTVAGK 60
           G     S  Y+  FK++LIG+SGVGK++LL  F  +    D   TIGV+F  + + +   
Sbjct: 13  GLVPRGSEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTA 72

Query: 61  RLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQD 120
            +K  IWDTAG ER+R +TS+YYRGA G +LV+D+T+ +T+  +   W KE+  ++    
Sbjct: 73  AVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVER-WLKELYDHA-EAT 130

Query: 121 CVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIME 178
            V MLVGNK D    R V  EE    A+ +G LFLE SA    NVE  FE +  +I  
Sbjct: 131 IVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFA 188

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* Length = 186

 Score =  270 bits (693), Expect = 1e-93
 Identities = 86/172 (50%), Positives = 116/172 (67%), Gaps = 3/172 (1%)

Query: 8   SNSYDLSFKILLIGDSGVGKSSLLVSFISSS-VDDLSPTIGVDFKIKLLTVAGKRLKLTI 66
           S +YD  FK L+IG++G GKS LL  FI     DD + TIGV+F  K++ V GK +KL I
Sbjct: 4   SETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQI 63

Query: 67  WDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLV 126
           WDTAGQERFR++T SYYRGA G +LVYD+T RET+  L++ W  +  + + +Q+ V +L 
Sbjct: 64  WDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTN-WLTDARMLA-SQNIVIILC 121

Query: 127 GNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIME 178
           GNK D D++R V+  E    A+E+  +FLE SA T ENVE+ F Q A KI+ 
Sbjct: 122 GNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILN 173

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} Length = 200

 Score =  271 bits (694), Expect = 1e-93
 Identities = 82/178 (46%), Positives = 110/178 (61%), Gaps = 3/178 (1%)

Query: 2   GSSSGQSNSYDLSFKILLIGDSGVGKSSLLVSFISSS-VDDLSPTIGVDFKIKLLTVAGK 60
           G     S   D  FK L+IG +G GKS LL  FI +    D + TIGV+F  +++ V GK
Sbjct: 13  GLVPRGSIWSDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGK 72

Query: 61  RLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQD 120
            +KL IWDTAGQERFR++T SYYRGA G +LVYD+T RET+ +L+  W  +    + + +
Sbjct: 73  TVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAA-WLTDARTLA-SPN 130

Query: 121 CVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIME 178
            V +L GNK D D ER V+  E    A+E+  +FLE SA T ENVE+ F + A  I+ 
Sbjct: 131 IVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILN 188

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* Length = 195

 Score =  270 bits (693), Expect = 1e-93
 Identities = 62/185 (33%), Positives = 103/185 (55%), Gaps = 12/185 (6%)

Query: 5   SGQSNSYDLSFKILLIGDSGVGKSSLLVSFISSS-VDDLSPTIGVDFKIKLLTV------ 57
           S     YD   K L +GDSGVGK+S+L  +           T+G+DF+ K +        
Sbjct: 2   SMSDGDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPD 61

Query: 58  ----AGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVD 113
                G+R+ L +WDTAG ERFR+LT++++R A G +L++D+T  ++F N+ + W  ++ 
Sbjct: 62  GAVGRGQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRN-WISQLQ 120

Query: 114 LYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLA 173
           +++ +++   +L GNK D + +R V  EE   LA+++G  + E SA    N+    E L 
Sbjct: 121 MHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEMLL 180

Query: 174 LKIME 178
             IM+
Sbjct: 181 DLIMK 185

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 213

 Score =  271 bits (694), Expect = 2e-93
 Identities = 100/207 (48%), Positives = 130/207 (62%), Gaps = 7/207 (3%)

Query: 1   MGSSSGQSNSYDLSFKILLIGDSGVGKSSLLVSFISSS-VDDLSPTIGVDFKIKLLTVAG 59
           + +SSG   SYD   KILLIGDSGVGKS LLV F+          TIG+DFKIK + + G
Sbjct: 7   VSASSGNGKSYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDING 66

Query: 60  KRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQ 119
           K++KL +WDTAGQERFRT+T++YYRGA GIILVYDVT   TFTN+   W K V+ ++ N 
Sbjct: 67  KKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQ-WFKTVNEHA-ND 124

Query: 120 DCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKI--- 176
           +   +LVGNK D +  RVV+ ++G ALAKE G  F+E SAK  +NV + F  LA  I   
Sbjct: 125 EAQLLLVGNKSDME-TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEK 183

Query: 177 MEVPSLLEEGSNVVKRNILKQKPENQS 203
           ++   L+  G+       +     N S
Sbjct: 184 IDSNKLVGVGNGKEGNISINSGSGNSS 210

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} Length = 201

 Score =  270 bits (692), Expect = 2e-93
 Identities = 76/178 (42%), Positives = 112/178 (62%), Gaps = 4/178 (2%)

Query: 3   SSSGQSNSYDLSFKILLIGDSGVGKSSLLVSFISSS-VDDLSPTIGVDFKIKLLTVAGKR 61
            S      YD  FK++L+GD+ VGK+ ++  F + +  +    TIGVDF +K L + GKR
Sbjct: 18  GSGDPDEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKR 77

Query: 62  LKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDC 121
           +KL IWDTAGQERFRT+T SYYR A G IL YD+T+R +F ++   W ++V  Y+   + 
Sbjct: 78  VKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPH-WIEDVRKYA-GSNI 135

Query: 122 VKMLVGNKVDRDSERVVSREEGIALAKEHGSL-FLECSAKTRENVEQCFEQLALKIME 178
           V++L+GNK D    R VS  E  +LA+ +  L  +E SAK   NVE+ F ++A +++ 
Sbjct: 136 VQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELIM 193

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* Length = 217

 Score =  270 bits (692), Expect = 5e-93
 Identities = 62/188 (32%), Positives = 106/188 (56%), Gaps = 12/188 (6%)

Query: 2   GSSSGQSNSYDLSFKILLIGDSGVGKSSLLVSFISSS-VDDLSPTIGVDFKIKLLTVAGK 60
           G     S  YD   K+L +GDSGVGK++ L  +  +        T+G+DF+ K +    +
Sbjct: 13  GLVPRGSGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQ 72

Query: 61  ----------RLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAK 110
                     ++ L +WDTAGQERFR+LT++++R A G +L++D+T +++F N+ + W  
Sbjct: 73  GPNGSSGKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRN-WMS 131

Query: 111 EVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFE 170
           ++   +  ++   +L+GNK D   +R V+  +   LA ++G  + E SA T +NVE+  E
Sbjct: 132 QLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVE 191

Query: 171 QLALKIME 178
            L   IM+
Sbjct: 192 TLLDLIMK 199

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* Length = 199

 Score =  268 bits (688), Expect = 1e-92
 Identities = 78/196 (39%), Positives = 112/196 (57%), Gaps = 3/196 (1%)

Query: 11  YDLSFKILLIGDSGVGKSSLLVSFISSS-VDDLSPTIGVDFKIKLLTVAGKRLKLTIWDT 69
           YD  FK++LIGDSGVGKS+LL  F  +    +   TIGV+F  + + V GK +K  IWDT
Sbjct: 2   YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 61

Query: 70  AGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNK 129
           AGQER+R +TS+YYRGA G +LVYD+ +  T+ N+   W KE+  ++ + + V MLVGNK
Sbjct: 62  AGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVER-WLKELRDHA-DSNIVIMLVGNK 119

Query: 130 VDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIMEVPSLLEEGSNV 189
            D    R V  +E  A A+++   F+E SA    NVE+ F+ +  +I  + S  +     
Sbjct: 120 SDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQIADRA 179

Query: 190 VKRNILKQKPENQSPP 205
                      + S P
Sbjct: 180 AHDESPGNNVVDISVP 195

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} Length = 223

 Score =  268 bits (688), Expect = 2e-92
 Identities = 84/224 (37%), Positives = 117/224 (52%), Gaps = 18/224 (8%)

Query: 3   SSSGQSNSYDLSFKILLIGDSGVGKSSLLVSFISSS-VDDLSPTIGVDFKIKLLTVAGKR 61
           SS      YDL FKI+LIGDSGVGKS+LL  F  +    D   TIGV+F  + L + GKR
Sbjct: 2   SSEDYGYDYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKR 61

Query: 62  LKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDC 121
           +K  IWDTAGQER+R +TS+YYRGA G ++VYD+++  ++ N +  W  E+   + + + 
Sbjct: 62  IKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNH-WLSELRENA-DDNV 119

Query: 122 VKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIME--- 178
              L+GNK D    R V  EE    A+E+  LF E SA   ENV++ FE+L   I +   
Sbjct: 120 AVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTIYQKVS 179

Query: 179 ------------VPSLLEEGSNVVKRNILKQKPENQSPPIGGCC 210
                         +      N    ++     EN+      CC
Sbjct: 180 KHQMDLGDSSANGNANGASAPNGPTISLTPTPNENKKANGNNCC 223

>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens} Length = 211

 Score =  266 bits (681), Expect = 2e-91
 Identities = 76/209 (36%), Positives = 115/209 (55%), Gaps = 4/209 (1%)

Query: 3   SSSGQSNSYDLSFKILLIGDSGVGKSSLLVSFISSSVDDLS-PTIGVDFKIKLLTVAGKR 61
           S+ G   +    FK++ +G+  VGK+SL+  F+  S D+    TIG+DF  K + +  + 
Sbjct: 5   STGGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRT 64

Query: 62  LKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDC 121
           ++L +WDTAG ERFR+L  SY R +   ++VYD+T   +F   +  W  +V       D 
Sbjct: 65  VRLQLWDTAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTK-WIDDVRTER-GSDV 122

Query: 122 VKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIMEVPS 181
           + MLVGNK D   +R VS EEG   AKE   +F+E SAK   NV+Q F ++A  +  + S
Sbjct: 123 IIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMES 182

Query: 182 LLEEGSNVVKRNILKQKPENQSPPIGGCC 210
             ++ S     +I  +KP+ Q    GGC 
Sbjct: 183 -TQDRSREDMIDIKLEKPQEQPVSEGGCL 210

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* Length = 170

 Score =  263 bits (675), Expect = 4e-91
 Identities = 65/170 (38%), Positives = 99/170 (58%), Gaps = 3/170 (1%)

Query: 10  SYDLSFKILLIGDSGVGKSSLLVSFISSSVDDLS-PTIGVDFKIKLLTVAGKRLKLTIWD 68
           S   SFK++L+G+  VGK+SL++ +  +  +D    T+G  F  K L + GKR+ L IWD
Sbjct: 2   SRAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWD 61

Query: 69  TAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGN 128
           TAGQERF  L   YYR + G ILVYD+T  ++F  + + W KE+       +    +VGN
Sbjct: 62  TAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKN-WVKELRKML-GNEICLCIVGN 119

Query: 129 KVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIME 178
           K+D + ER VS +E  + A+  G+     SAK  + +E+ F  L  +++E
Sbjct: 120 KIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIE 169

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A Length = 170

 Score =  262 bits (672), Expect = 1e-90
 Identities = 92/168 (54%), Positives = 115/168 (68%), Gaps = 4/168 (2%)

Query: 12  DLSFKILLIGDSGVGKSSLLVSFISSS-VDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTA 70
           D   KILLIGDSGVGKS LLV F+          TIG+DFKIK + + GK++KL IWDTA
Sbjct: 1   DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTA 60

Query: 71  GQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKV 130
           GQERFRT+T++YYRGA GIILVYD+T   TFTN+   W K V+ ++ N +   +LVGNK 
Sbjct: 61  GQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQ-WFKTVNEHA-NDEAQLLLVGNKS 118

Query: 131 DRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIME 178
           D +  RVV+ ++G ALAKE G  F+E SAK  +NV + F  LA  I E
Sbjct: 119 DME-TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQE 165

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* Length = 168

 Score =  262 bits (672), Expect = 1e-90
 Identities = 59/169 (34%), Positives = 92/169 (54%), Gaps = 4/169 (2%)

Query: 11  YDLSFKILLIGDSGVGKSSLLVSFISSS-VDDLSPTIGVDFKIKLLTVAGKRLKLTIWDT 69
            +++ K++++G+  VGKSS++  +       D   TIGVDF  + + V  + ++L +WDT
Sbjct: 2   SEVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDT 61

Query: 70  AGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNK 129
           AGQE F  +T +YYRGAQ  +LV+  T RE+F  +S  W ++V     +      LV NK
Sbjct: 62  AGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISS-WREKVVAEVGD--IPTALVQNK 118

Query: 130 VDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIME 178
           +D   +  +  EE   LAK     F   S K   NV + F+ LA K ++
Sbjct: 119 IDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHLQ 167

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* Length = 178

 Score =  262 bits (673), Expect = 1e-90
 Identities = 59/176 (33%), Positives = 93/176 (52%), Gaps = 5/176 (2%)

Query: 10  SYDLSFKILLIGDSGVGKSSLLVSFISSSVDDLS-PTIGVDFKIKLLTVAGK-RLKLTIW 67
           S+    KI+++GD   GK+SL   F   +       TIG+DF ++ +T+ G   + L IW
Sbjct: 2   SHMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIW 61

Query: 68  DTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYST--NQDCVKML 125
           D  GQ     +   Y  GAQG++LVYD+T  ++F NL D W   V   S       +  L
Sbjct: 62  DIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLED-WYTVVKKVSEESETQPLVAL 120

Query: 126 VGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIMEVPS 181
           VGNK+D +  R +  E+ +   +E+G      SAKT ++V  CF+++A +I+ +  
Sbjct: 121 VGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEILGIKL 176

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} Length = 199

 Score =  262 bits (672), Expect = 2e-90
 Identities = 70/183 (38%), Positives = 110/183 (60%), Gaps = 9/183 (4%)

Query: 3   SSSGQSNSYDLSFKILLIGDSGVGKSSLLVSFISSS-VDDLSPTIGVDFKIKLLTVAGKR 61
             S +S S   ++KI+L GD+ VGKSS L+    +   +++S T+GVDF++K L V G+R
Sbjct: 17  RGSAKSFSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGER 76

Query: 62  LKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDC 121
             L +WDTAGQERFR++  SY+R A G++L+YDVT  ++F N+ + W   ++  + ++  
Sbjct: 77  TVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIRE-WVDMIEDAA-HETV 134

Query: 122 VKMLVGNKVD------RDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALK 175
             MLVGNK D       + ++ V    G  LA  +G+LF E SAK   N+ +    LA +
Sbjct: 135 PIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLARE 194

Query: 176 IME 178
           + +
Sbjct: 195 VKK 197

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* Length = 181

 Score =  260 bits (666), Expect = 2e-89
 Identities = 66/179 (36%), Positives = 99/179 (55%), Gaps = 3/179 (1%)

Query: 4   SSGQSNSYDLSFKILLIGDSGVGKSSLLVSFISSSVDDLS-PTIGVDFKIKLLTVAGKRL 62
           S   + +  ++ K++L+GD G GKSSL++ F+     +    TIG  F  + L V    +
Sbjct: 2   SMAAAGNKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATV 61

Query: 63  KLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCV 122
           K  IWDTAGQER+ +L   YYRGA   I+V+DVT + +F      W +E+     N + V
Sbjct: 62  KFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKK-WVQELQAQG-NPNMV 119

Query: 123 KMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIMEVPS 181
             L GNK D    R V+ E+    A+E+G  F+E SAKT  NV++ F ++A ++  V  
Sbjct: 120 MALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRLPRVQP 178

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* Length = 177

 Score =  258 bits (662), Expect = 4e-89
 Identities = 67/174 (38%), Positives = 102/174 (58%), Gaps = 7/174 (4%)

Query: 10  SYDLSFKILLIGDSGVGKSSLLVSFISSS-VDDLSPTIGVDFKIKLLTVAGKRLKLTIWD 68
                FK++L+GD GVGKSSL+  ++++     L  TIGV+F  K L V G  + + IWD
Sbjct: 3   GKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWD 62

Query: 69  TAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDC---VKML 125
           TAGQERFR+L + +YRG+   +L + V   ++F NLS+ W KE   Y+  ++      ++
Sbjct: 63  TAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSN-WKKEFIYYADVKEPESFPFVI 121

Query: 126 VGNKVDRDSERVVSREEGIALAKEHGSL-FLECSAKTRENVEQCFEQLALKIME 178
           +GNK+D   ER VS EE  A  +++G   + E SAK   NV   FE+   +++ 
Sbjct: 122 LGNKIDIS-ERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLA 174

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} Length = 218

 Score =  257 bits (658), Expect = 6e-88
 Identities = 59/202 (29%), Positives = 94/202 (46%), Gaps = 4/202 (1%)

Query: 5   SGQSNSYDLSFKILLIGDSGVGKSSLLVSFISSS-VDDLSPTIGV-DFKIKLLTVAGKRL 62
            G     +L++KI LIGD GVGK++ +   +      + + T+G  +  +  L   G  +
Sbjct: 2   PGSMERRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVI 61

Query: 63  KLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCV 122
           K  +WDTAGQE+   L   YY GA G IL +DVT R T  NL+  W KE      N +  
Sbjct: 62  KFNVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLAR-WVKEFQAVVGN-EAP 119

Query: 123 KMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIMEVPSL 182
            ++  NK+D  + + +S++  + + K     + E SAKT  N    F  LA      P L
Sbjct: 120 IVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLARIFTGRPDL 179

Query: 183 LEEGSNVVKRNILKQKPENQSP 204
           +   +  ++   +     +   
Sbjct: 180 IFVSNVNLEPTEVNYDYHSPEE 201

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* Length = 207

 Score =  256 bits (657), Expect = 7e-88
 Identities = 62/208 (29%), Positives = 112/208 (53%), Gaps = 7/208 (3%)

Query: 8   SNSYDLSFKILLIGDSGVGKSSLLVSFISSSVDDLS-PTIGVDFKIKLLTVAGKRLKLTI 66
           ++   +  K++++GDSGVGK+SL+  +++    +    TIG DF  K + V  + + + I
Sbjct: 2   TSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQI 61

Query: 67  WDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDC---VK 123
           WDTAGQERF++L  ++YRGA   +LV+DVT   TF  L   W  E  + ++ +D      
Sbjct: 62  WDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDS-WRDEFLIQASPRDPENFPF 120

Query: 124 MLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIMEVPSLL 183
           +++GNK+D ++ +V ++        ++   + E SAK   NVEQ F+ +A   ++  + +
Sbjct: 121 VVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEV 180

Query: 184 EEGSNVVKRNILKQKPENQSPPIGGCCS 211
           E  +   +   L +    ++      CS
Sbjct: 181 ELYNEFPEPIKLDKNERAKAS--AESCS 206

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 Length = 192

 Score =  254 bits (652), Expect = 2e-87
 Identities = 62/180 (34%), Positives = 97/180 (53%), Gaps = 3/180 (1%)

Query: 3   SSSGQSNSYDLSFKILLIGDSGVGKSSLLVSFISSSVDDLS-PTIGVDFKIKLLTVAGKR 61
           S      S     K+ L+GD+GVGKSS++  F+    D    PTIG  F  K +    + 
Sbjct: 12  SGLVPRGSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNEL 71

Query: 62  LKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDC 121
            K  IWDTAGQERF +L   YYRG+   ++VYD+T++++F  L   W KE+  +   ++ 
Sbjct: 72  HKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKK-WVKELKEHG-PENI 129

Query: 122 VKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIMEVPS 181
           V  + GNK D    R V  ++    A+  G++ +E SAK   N+E+ F+ ++ +I  +  
Sbjct: 130 VMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQIPPLDP 189

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* Length = 179

 Score =  254 bits (651), Expect = 3e-87
 Identities = 70/174 (40%), Positives = 101/174 (58%), Gaps = 3/174 (1%)

Query: 4   SSGQSNSYDLSFKILLIGDSGVGKSSLLVSFISSSVDDLS-PTIGVDFKIKLLTVAGKRL 62
           SSG   +    FK++ +G+  VGK+SL+  F+  S D+    TIG+DF  K + +  + +
Sbjct: 4   SSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTV 63

Query: 63  KLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCV 122
           +L +WDTAGQERFR+L  SY R +   ++VYD+T   +F   S  W  +V       D +
Sbjct: 64  RLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSK-WIDDVRTER-GSDVI 121

Query: 123 KMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKI 176
            MLVGNK D   +R VS EEG   AKE   +F+E SAK   NV+Q F ++A  +
Sbjct: 122 IMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 175

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* Length = 170

 Score =  253 bits (650), Expect = 3e-87
 Identities = 62/166 (37%), Positives = 90/166 (54%), Gaps = 3/166 (1%)

Query: 14  SFKILLIGDSGVGKSSLLVSFISSSVDDLS-PTIGVDFKIKLLTVAGKRLKLTIWDTAGQ 72
             K+ L+GD+GVGKSS++  F+  S D    PTIG  F  K +    +  K  IWDTAG 
Sbjct: 6   ELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGL 65

Query: 73  ERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDR 132
           ERFR L   YYRG+   I+VYD+T+ ETF+ L + W +E+  +      V  + GNK D 
Sbjct: 66  ERFRALAPMYYRGSAAAIIVYDITKEETFSTLKN-WVRELRQHG-PPSIVVAIAGNKCDL 123

Query: 133 DSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIME 178
              R V   +    A    ++F+E SAK   N+ + F +++ +I  
Sbjct: 124 TDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRIPS 169

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* Length = 170

 Score =  250 bits (642), Expect = 4e-86
 Identities = 65/170 (38%), Positives = 99/170 (58%), Gaps = 3/170 (1%)

Query: 10  SYDLSFKILLIGDSGVGKSSLLVSFISSSVDDLS-PTIGVDFKIKLLTVAGKRLKLTIWD 68
           +    FK++L+G+S VGKSSL++ F+     +    TIG  F  + + +    +K  IWD
Sbjct: 2   NKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWD 61

Query: 69  TAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGN 128
           TAGQER+ +L   YYRGAQ  I+VYD+T  E+F    + W KE+   + + + V  L GN
Sbjct: 62  TAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKN-WVKELQRQA-SPNIVIALSGN 119

Query: 129 KVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIME 178
           K D  ++R V  +E  + A ++  LF+E SAKT  NV + F  +A K+ +
Sbjct: 120 KADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C* ... Length = 221

 Score =  247 bits (634), Expect = 3e-84
 Identities = 55/201 (27%), Positives = 96/201 (47%), Gaps = 6/201 (2%)

Query: 4   SSGQSNSYDLSFKILLIGDSGVGKSSLLVSFISSSVDDLS-PTIGVDFKIKLLTVAGKRL 62
           +S       + FK++L+GD G GK++ +   ++   +     T+GV+    +       +
Sbjct: 5   ASAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPI 64

Query: 63  KLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCV 122
           K  +WDTAGQE+F  L   YY  AQ  I+++DVT R T+ N+ + W +++     N    
Sbjct: 65  KFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPN-WHRDLVRVCEN--IP 121

Query: 123 KMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIMEVPSL 182
            +L GNKVD    +V    + I   ++    + + SAK+  N E+ F  LA K++  P+L
Sbjct: 122 IVLCGNKVDIKDRKVK--AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNL 179

Query: 183 LEEGSNVVKRNILKQKPENQS 203
                  +    +   P   +
Sbjct: 180 EFVAMPALAPPEVVMDPALAA 200

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* Length = 182

 Score =  245 bits (629), Expect = 6e-84
 Identities = 63/178 (35%), Positives = 105/178 (58%), Gaps = 8/178 (4%)

Query: 8   SNSYDLSFKILLIGDSGVGKSSLLVSFISSSVDDLS-PTIGVDFKIKLLTVAGKRL-KLT 65
           S+      K++++GDSGVGK+SL+  +++         TIG DF  K +TV G ++  + 
Sbjct: 2   SSRKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQ 61

Query: 66  IWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYS---TNQDCV 122
           +WDTAGQERF++L  ++YRGA   +LVYDVT   +F N+   W  E  +++   + +   
Sbjct: 62  VWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKS-WRDEFLVHANVNSPETFP 120

Query: 123 KMLVGNKVD-RDSERVVSREEGIALAKEHGSL-FLECSAKTRENVEQCFEQLALKIME 178
            +++GNK+D  +S+++VS +    LAK  G +     SAK   NV+  FE++A   ++
Sbjct: 121 FVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQ 178

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C Length = 208

 Score =  242 bits (621), Expect = 2e-82
 Identities = 43/185 (23%), Positives = 81/185 (43%), Gaps = 10/185 (5%)

Query: 3   SSSGQSNSYDLSFKILLIGDSGVGKSSLLVSFISSS---VDDLSPTIGVDFKIKLLTVAG 59
                  +  L  K+ ++G++ VGKS+L+  F S     + D + T GV+  +  +T+  
Sbjct: 9   EVKPIDITATLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPD 68

Query: 60  KRLKLTIW--DTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYS- 116
             + + ++  DTAG + ++   S Y+ G    ILV+DV+  E+F +    W + +     
Sbjct: 69  TTVSVELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKA-WFELLKSARP 127

Query: 117 -TNQDCVKMLVGNKVDRDSER-VVSREEGIALAKEHGSLFLECSAK-TRENVEQCFEQLA 173
              +    +LV NK D   +R  V  +     A  +   F + SA    ++ +  F  +A
Sbjct: 128 DRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGKDADAPFLSIA 187

Query: 174 LKIME 178
                
Sbjct: 188 TTFYR 192

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} Length = 206

 Score =  235 bits (602), Expect = 1e-79
 Identities = 58/211 (27%), Positives = 111/211 (52%), Gaps = 8/211 (3%)

Query: 1   MGSSSGQSNSYDLSFKILLIGDSGVGKSSLLVSFISSS-VDDLSPTIGVDFKIKLLTVAG 59
           M ++  +  +     K++++G  GVGKS+L + F+    V+D  PT    ++ K + + G
Sbjct: 1   MAANKPKGQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDG 59

Query: 60  KRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQ 119
           + +++ I DTAGQE +  +  +Y+R  +G + V+ +T  E+F   +D + +++     ++
Sbjct: 60  EEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATAD-FREQILRVKEDE 118

Query: 120 DCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIMEV 179
           +   +LVGNK D + +R VS EE    A++    ++E SAKTR NV++ F  L  +I   
Sbjct: 119 NVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRA- 177

Query: 180 PSLLEEGSNVVKRNILKQKPENQSPPIGGCC 210
                +  +  ++N  K++          CC
Sbjct: 178 ----RKMEDSKEKNGKKKRKSLAKRIRERCC 204

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* Length = 187

 Score =  230 bits (588), Expect = 1e-77
 Identities = 55/179 (30%), Positives = 100/179 (55%), Gaps = 3/179 (1%)

Query: 1   MGSSSGQSNSYDLSFKILLIGDSGVGKSSLLVSFISSS-VDDLSPTIGVDFKIKLLTVAG 59
           +    G S +     K++++G  GVGKS+L + F+    V+D  PT    ++ K + + G
Sbjct: 5   ISGGGGGSQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDG 63

Query: 60  KRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQ 119
           + +++ I DTAGQE +  +  +Y+R  +G + V+ +T  E+F   +D + +++     ++
Sbjct: 64  EEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATAD-FREQILRVKEDE 122

Query: 120 DCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIME 178
           +   +LVGNK D + +R VS EE    A++    ++E SAKTR NV++ F  L  +I  
Sbjct: 123 NVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRA 181

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* Length = 181

 Score =  229 bits (586), Expect = 2e-77
 Identities = 64/198 (32%), Positives = 92/198 (46%), Gaps = 21/198 (10%)

Query: 8   SNSYDLSFKILLIGDSGVGKSSLLVSFISSS-VDDLSPTIGVDFKIKLLTVAGKRLKLTI 66
                 + K++++G  GVGKS+L + FI S  V D  PTI  D   K+ +V G   +L I
Sbjct: 3   DPPPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIE-DSYTKICSVDGIPARLDI 61

Query: 67  WDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLV 126
            DTAGQE F  +   Y R   G +LV+ +  R++F  +      ++       D   +LV
Sbjct: 62  LDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGK-LFTQILRVKDRDDFPVVLV 120

Query: 127 GNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIMEVPSLLEEG 186
           GNK D +S+R V R E  A    H   + E SAK R NV++ FEQL              
Sbjct: 121 GNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLV------------- 167

Query: 187 SNVVKRNILKQKPENQSP 204
                R + K + +   P
Sbjct: 168 -----RAVRKYQEQELPP 180

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} Length = 195

 Score =  229 bits (585), Expect = 4e-77
 Identities = 48/178 (26%), Positives = 75/178 (42%), Gaps = 4/178 (2%)

Query: 2   GSSSGQSNS-YDLSFKILLIGDSGVGKSSLLVSFISSS-VDDLSPTIGVDFKIKLLTVAG 59
           G  +       D  FK++L+G+SGVGKS+L  +F          P    D   + + V  
Sbjct: 10  GRENLYFQGQKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDK 69

Query: 60  KRLKLTIWDTAGQERFR-TLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTN 118
           + + L ++D   Q      L     +     ++V+ VT R +F+ + +     +     +
Sbjct: 70  EEVTLVVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPE-TLLRLRAGRPH 128

Query: 119 QDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKI 176
            D   +LVGNK D    R VS EEG  LA       +E SA    N  + FE    +I
Sbjct: 129 HDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQI 186

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} Length = 208

 Score =  227 bits (580), Expect = 3e-76
 Identities = 53/207 (25%), Positives = 93/207 (44%), Gaps = 43/207 (20%)

Query: 10  SYDLSFKILLIGDSGVGKSSLLVSFISSSVDDLS-PTIGVDFKIKLLTVAGKRLK----- 63
               S+K +L+G+S VGKSS+++     +  + +  TIG  F   ++ +    +K     
Sbjct: 3   EKKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNN 62

Query: 64  --------------------------------LTIWDTAGQERFRTLTSSYYRGAQGIIL 91
                                             IWDTAGQER+ ++   YYRGA   I+
Sbjct: 63  EKNNNINSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIV 122

Query: 92  VYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHG 151
           V+D++   T       W  ++     + + + +LV NK+D++ +  V   E    A+++ 
Sbjct: 123 VFDISNSNTLDRAKT-WVNQLK---ISSNYIIILVANKIDKN-KFQVDILEVQKYAQDNN 177

Query: 152 SLFLECSAKTRENVEQCFEQLALKIME 178
            LF++ SAKT  N++  F  LA +I +
Sbjct: 178 LLFIQTSAKTGTNIKNIFYMLAEEIYK 204

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} Length = 169

 Score =  222 bits (567), Expect = 9e-75
 Identities = 45/164 (27%), Positives = 71/164 (43%), Gaps = 3/164 (1%)

Query: 15  FKILLIGDSGVGKSSLLVSFISSS-VDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQE 73
           FK++L+G+SGVGKS+L  +F               D   + + V  + + L ++D   Q 
Sbjct: 3   FKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQG 62

Query: 74  RFR-TLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDR 132
                L     +     ++V+ VT R +F+ + +     +     + D   +LVGNK D 
Sbjct: 63  DAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPE-TLLRLRAGRPHHDLPVILVGNKSDL 121

Query: 133 DSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKI 176
              R VS EEG  LA       +E SA    N  + FE    +I
Sbjct: 122 ARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQI 165

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 199

 Score =  222 bits (568), Expect = 2e-74
 Identities = 52/204 (25%), Positives = 92/204 (45%), Gaps = 10/204 (4%)

Query: 9   NSYDLSFKILLIGDSGVGKSSLLVSFISSS-VDDLSPTIGVDFKIKLLTVAGKRLKLTIW 67
                 +++++ G  GVGKSSL++ F+  +  D   PTI   ++ ++++       L I 
Sbjct: 3   PEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYR-QVISCDKSVCTLQIT 61

Query: 68  DTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVG 127
           DT G  +F  +           ILV+ VT +++   L  ++   V +  + +D   MLVG
Sbjct: 62  DTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVG 121

Query: 128 NKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIMEVPSLLEEGS 187
           NK D   +R V   E  A+A+E    F+E SAK   NV++ F++L          L    
Sbjct: 122 NKCDET-QREVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQELLTLETRRNMSLNIDG 180

Query: 188 NVVKRNILKQKPENQSPPIGGCCS 211
                   +   + ++  + G C+
Sbjct: 181 K-------RSGKQKRTDRVKGKCT 197

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* Length = 166

 Score =  220 bits (564), Expect = 2e-74
 Identities = 48/162 (29%), Positives = 73/162 (45%), Gaps = 2/162 (1%)

Query: 15  FKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER 74
           +K+LL+G  GVGKS+L   F        +   G  +  + + V G+   L ++D   Q+ 
Sbjct: 3   YKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYD-RSIVVDGEEASLMVYDIWEQDG 61

Query: 75  FRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDS 134
            R L           ++VY VT + +F   S+    ++       D   +LVGNK D   
Sbjct: 62  GRWLPGHCMAMGDAYVIVYSVTDKGSFEKASE-LRVQLRRARQTDDVPIILVGNKSDLVR 120

Query: 135 ERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKI 176
            R VS +EG A A      F+E SA    NV+  FE +  +I
Sbjct: 121 SREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQI 162

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* Length = 181

 Score =  221 bits (565), Expect = 2e-74
 Identities = 65/180 (36%), Positives = 92/180 (51%), Gaps = 3/180 (1%)

Query: 10  SYDLSFKILLIGDSGVGKSSLLVSFISSS-VDDLSPTIGVDFKIKLLTVAGKRLKLTIWD 68
               S KI ++G   VGKSSL + F+    VD   PTI   F  KL+TV G+   L + D
Sbjct: 2   PQSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFT-KLITVNGQEYHLQLVD 60

Query: 69  TAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGN 128
           TAGQ+ +     +Y     G ILVY VT  ++F  +  +  K +D+         MLVGN
Sbjct: 61  TAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGK-VQIPIMLVGN 119

Query: 129 KVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIMEVPSLLEEGSN 188
           K D   ERV+S EEG ALA+   + FLE SAK  +     F ++ L+  ++     +G +
Sbjct: 120 KKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEAEKMDGACSQGKS 179

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* Length = 168

 Score =  219 bits (561), Expect = 8e-74
 Identities = 53/165 (32%), Positives = 95/165 (57%), Gaps = 3/165 (1%)

Query: 15  FKILLIGDSGVGKSSLLVSFISSS-VDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQE 73
            K++++G  GVGKS+L + F+    V+D  PT    ++ K + + G+ +++ I DTAGQE
Sbjct: 5   HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQIDILDTAGQE 63

Query: 74  RFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRD 133
            +  +  +Y+R  +G + V+ +T  E+F   +D + +++     +++   +LVGNK D +
Sbjct: 64  DYAAIRDNYFRSGEGFLCVFSITEMESFAATAD-FREQILRVKEDENVPFLLVGNKSDLE 122

Query: 134 SERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIME 178
            +R VS EE    A +    ++E SAKTR NV++ F  L  +I  
Sbjct: 123 DKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREIRA 167

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* Length = 183

 Score =  218 bits (557), Expect = 5e-73
 Identities = 55/178 (30%), Positives = 93/178 (52%), Gaps = 4/178 (2%)

Query: 3   SSSGQSNSYDLSFKILLIGDSGVGKSSLLVSFISSS-VDDLSPTIGVDFKIKLLTVAGKR 61
           ++S   +    ++K++++GD GVGKS+L + F     VDD  PTI  D  +K   +  + 
Sbjct: 7   ATSAVPSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIE-DSYLKHTEIDNQW 65

Query: 62  LKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDC 121
             L + DTAGQE F  +   Y R   G ++VY VT + +F ++   + + +      +  
Sbjct: 66  AILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDR-FHQLILRVKDRESF 124

Query: 122 VKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRE-NVEQCFEQLALKIME 178
             +LV NKVD    R V+R++G  +A ++   ++E SAK    NV++ F  L   I +
Sbjct: 125 PMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQ 182

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* Length = 167

 Score =  216 bits (554), Expect = 9e-73
 Identities = 59/163 (36%), Positives = 96/163 (58%), Gaps = 3/163 (1%)

Query: 15  FKILLIGDSGVGKSSLLVSFISSS-VDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQE 73
           +K++++G  GVGKS+L V F++ + ++   PTI  DF  K + V      L I DTAG E
Sbjct: 4   YKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTE 62

Query: 74  RFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRD 133
           +F ++   Y +  QG ILVY +  +++F ++      ++      +    +LVGNKVD +
Sbjct: 63  QFASMRDLYIKNGQGFILVYSLVNQQSFQDIKP-MRDQIIRVKRYEKVPVILVGNKVDLE 121

Query: 134 SERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKI 176
           SER VS  EG ALA+E G  F+E SAK++  V++ F ++  ++
Sbjct: 122 SEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQM 164

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} Length = 201

 Score =  217 bits (554), Expect = 2e-72
 Identities = 50/178 (28%), Positives = 83/178 (46%), Gaps = 3/178 (1%)

Query: 3   SSSGQSNSYDLSFKILLIGDSGVGKSSLLVSFISSS-VDDLSPTIGVDFKIKLLTVAGKR 61
           +   Q        K++++G   VGK+SL   F+     +   PT+   +  K++T+    
Sbjct: 13  NLYFQGMPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYS-KIVTLGKDE 71

Query: 62  LKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDC 121
             L + DTAGQ+ +  L  S+  G  G +LVY VT   +F  +     +++         
Sbjct: 72  FHLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIES-LYQKLHEGHGKTRV 130

Query: 122 VKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIMEV 179
             +LVGNK D   ER V   EG  LA+  G+ F+E SA+  +  +  F ++  +I  V
Sbjct: 131 PVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGIFTKVIQEIARV 188

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... Length = 166

 Score =  215 bits (551), Expect = 2e-72
 Identities = 52/165 (31%), Positives = 91/165 (55%), Gaps = 4/165 (2%)

Query: 15  FKILLIGDSGVGKSSLLVSFISSS-VDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQE 73
           +K++++G  GVGKS+L +  I +  VD+  PTI   ++ K + + G+   L I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62

Query: 74  RFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRD 133
            +  +   Y R  +G + V+ +   ++F ++   + +++     + D   +LVGNK D  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKSD-L 120

Query: 134 SERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIME 178
           + R V   +   LA+ +G  ++E SAKTR+ VE  F  L  +I +
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* Length = 190

 Score =  214 bits (547), Expect = 2e-71
 Identities = 59/179 (32%), Positives = 98/179 (54%), Gaps = 7/179 (3%)

Query: 4   SSGQSNSYDLS---FKILLIGDSGVGKSSLLVSFISSS-VDDLSPTIGVDFKIKLLTVAG 59
           SSG+ N Y      +K++++G  GVGKS+L +  I +  VD+  PTI   ++ K + + G
Sbjct: 8   SSGRENLYFQGMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDG 66

Query: 60  KRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQ 119
           +   L I DTAGQE +  +   Y R  +G + V+ +   ++F +++  + +++     + 
Sbjct: 67  ETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINL-YREQIKRVKDSD 125

Query: 120 DCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIME 178
           D   +LVGNK D    R V  ++   LAK +G  F+E SAKTR+ VE  F  L  +I +
Sbjct: 126 DVPMVLVGNKCDLP-TRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREIRQ 183

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 Length = 172

 Score =  213 bits (544), Expect = 3e-71
 Identities = 46/163 (28%), Positives = 79/163 (48%), Gaps = 2/163 (1%)

Query: 15  FKILLIGDSGVGKSSLLVSFISSS-VDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQE 73
           +++ + G  GVGKSSL++ F+  +  +   PT+   ++ ++++       L I DT G  
Sbjct: 4   YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYR-QVISCDKSICTLQITDTTGSH 62

Query: 74  RFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRD 133
           +F  +           ILVY +T R++   L  ++ +  ++    +    MLVGNK D  
Sbjct: 63  QFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDES 122

Query: 134 SERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKI 176
             R V   E  ALA+     F+E SAK   NV++ F++L    
Sbjct: 123 PSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNLE 165

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* Length = 189

 Score =  212 bits (542), Expect = 1e-70
 Identities = 55/197 (27%), Positives = 98/197 (49%), Gaps = 15/197 (7%)

Query: 15  FKILLIGDSGVGKSSLLVSFISSS-VDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQE 73
           +K++++G  GVGKS+L +  I +  VD+  PTI   ++ K + + G+   L I DTAGQE
Sbjct: 5   YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 63

Query: 74  RFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRD 133
            +  +   Y R  +G + V+ +   ++F ++   + +++     ++D   +LVGNK D  
Sbjct: 64  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHH-YREQIKRVKDSEDVPMVLVGNKCDLP 122

Query: 134 SERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIMEVPSLLEEGSNVVKRN 193
             R V  ++   LA+ +G  F+E SAKTR+ V+  F  L  +I +            K  
Sbjct: 123 -SRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRK-----------HKEK 170

Query: 194 ILKQKPENQSPPIGGCC 210
           + K   + +      C 
Sbjct: 171 MSKDGKKKKKKSKTKCV 187

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* Length = 167

 Score =  209 bits (535), Expect = 6e-70
 Identities = 61/164 (37%), Positives = 94/164 (57%), Gaps = 4/164 (2%)

Query: 15  FKILLIGDSGVGKSSLLVSFISSS-VDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQE 73
           +K++++G  GVGKS+L V F+    V+   PTI   ++ K + V  ++  L I DTAG E
Sbjct: 4   YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDCQQCMLEILDTAGTE 62

Query: 74  RFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRD 133
           +F  +   Y +  QG  LVY +T + TF +L D   +++      +D   +LVGNK D +
Sbjct: 63  QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQD-LREQILRVKDTEDVPMILVGNKCDLE 121

Query: 134 SERVVSREEGIALAKEH-GSLFLECSAKTRENVEQCFEQLALKI 176
            ERVV +E+G  LA++     FLE SAK++ NV + F  L  +I
Sbjct: 122 DERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} Length = 175

 Score =  208 bits (533), Expect = 2e-69
 Identities = 50/165 (30%), Positives = 76/165 (46%), Gaps = 5/165 (3%)

Query: 15  FKILLIGDSGVGKSSLLVSFISSS-VDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQE 73
           ++++L+GD GVGK+SL   F      D        D   + LTV G+   L + DT   E
Sbjct: 5   YRVVLLGDPGVGKTSLASLFAGKQERDLHEQLG-EDVYERTLTVDGEDTTLVVVDTWEAE 63

Query: 74  RFRTLTS--SYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVD 131
           +     S  S  +G    ++VY +  R +F + S+    ++           +LVGNK D
Sbjct: 64  KLDKSWSQESCLQGGSAYVIVYSIADRGSFESASE-LRIQLRRTHQADHVPIILVGNKAD 122

Query: 132 RDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKI 176
               R VS EEG A A      F+E SA  + NV + FE +  ++
Sbjct: 123 LARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELFEGVVRQL 167

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 170

 Score =  203 bits (517), Expect = 3e-67
 Identities = 74/169 (43%), Positives = 104/169 (61%), Gaps = 6/169 (3%)

Query: 14  SFKILLIGDSGVGKSSLLVSFISSSVDDLS-PTIGVDFKIKLLTVAGKRLKLTIWDTAGQ 72
           S K++L+G++ VGKSS+++ F+S+   +   PTIG  F  + +T+    +K  IWDTAGQ
Sbjct: 3   SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQ 62

Query: 73  ERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVD- 131
           ERF +L   YYR AQ  ++VYDVT+ ++F      W KE+   + ++D +  LVGNK+D 
Sbjct: 63  ERFASLAPXYYRNAQAALVVYDVTKPQSFIKARH-WVKELHEQA-SKDIIIALVGNKIDX 120

Query: 132 --RDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIME 178
                ER V+REEG  LA+E G LF E SAKT ENV   F  +  KI  
Sbjct: 121 LQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKIPL 169

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 Length = 211

 Score =  203 bits (519), Expect = 6e-67
 Identities = 50/180 (27%), Positives = 81/180 (45%), Gaps = 10/180 (5%)

Query: 3   SSSGQSNSYDLSFKILLIGDSGVGKSSLLVSFISSS---VDDLSPTIGVDFKIKLLTVAG 59
            S   S S +  ++++LIG+ GVGKS+L   F         D       D   + L V G
Sbjct: 26  DSVISSESGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLG-EDTYERTLMVDG 84

Query: 60  KR---LKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYS 116
           +    + L +W+  G+  +  L     +     ++VY +T R +F   S+    ++    
Sbjct: 85  ESATIILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASE-LRIQLRRAR 141

Query: 117 TNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKI 176
             +D   +LVGNK D    R VS  EG A A      F+E SA  + NV++ FE +  ++
Sbjct: 142 QTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQV 201

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 196

 Score =  200 bits (512), Expect = 5e-66
 Identities = 58/178 (32%), Positives = 91/178 (51%), Gaps = 5/178 (2%)

Query: 3   SSSGQSNSYDLSFKILLIGDSGVGKSSLLVSFISSS-VDDLSPTIGVDFKIKLLTVAGKR 61
           +   QS +     K+ + G +GVGKS+L+V F++   + +  PT+   ++    T+  + 
Sbjct: 17  NLYFQSMAKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYR-HQATIDDEV 75

Query: 62  LKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDC 121
           + + I DTAGQE        + R  +G +LVYD+T R +F  +       +D     ++ 
Sbjct: 76  VSMEILDTAGQEDTIQ-REGHMRWGEGFVLVYDITDRGSFEEVLP-LKNILDEIKKPKNV 133

Query: 122 VKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRE-NVEQCFEQLALKIME 178
             +LVGNK D D  R VS EEG  LA E    F ECSA T E N+ + F +L  ++  
Sbjct: 134 TLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREVRR 191

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} Length = 187

 Score =  196 bits (500), Expect = 2e-64
 Identities = 53/182 (29%), Positives = 88/182 (48%), Gaps = 10/182 (5%)

Query: 3   SSSGQSNSY---DLSFKILLIGDSGVGKSSLLVSFISSS-VDDLSPTIGVDFKIKLLTVA 58
            SSG+ N Y    L   + ++G  G GKS+L V F++   + +  P +   +     TV 
Sbjct: 7   HSSGRENLYFQGPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYS-SEETVD 65

Query: 59  GKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLY--S 116
            + + L + DTA  +  R     Y   A   ++VY V  R++F + S  + + + L+   
Sbjct: 66  HQPVHLRVMDTADLDTPRNCER-YLNWAHAFLVVYSVDSRQSFDSSSS-YLELLALHAKE 123

Query: 117 TNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTR-ENVEQCFEQLALK 175
           T +    +L+GNK+D    R V++ EG+ALA   G LF E SA    E+V+  F +   +
Sbjct: 124 TQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHEAVRE 183

Query: 176 IM 177
             
Sbjct: 184 AR 185

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* Length = 184

 Score =  191 bits (486), Expect = 3e-62
 Identities = 34/178 (19%), Positives = 76/178 (42%), Gaps = 16/178 (8%)

Query: 15  FKILLIGDSGVGKSSLLVSFISSSVDDLS---PTIGVDFKIKLLTVAGKR---LKLTIWD 68
            K++++G++G GK++LL   + +   DL     T+G+D K   + +  KR   L L +WD
Sbjct: 3   MKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWD 62

Query: 69  TAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGN 128
            AG+E F +    +       + VYD+++ +   +    W   +   +++     +LVG 
Sbjct: 63  FAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARASS--SPVILVGT 120

Query: 129 KVDRDSER---VVSREEGIALAKEHG-----SLFLECSAKTRENVEQCFEQLALKIME 178
            +D   E+       +    L  + G           + +  + + +  + +  + + 
Sbjct: 121 HLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATEESDALAKLRKTIINESLN 178

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} Length = 184

 Score =  188 bits (479), Expect = 4e-61
 Identities = 40/181 (22%), Positives = 79/181 (43%), Gaps = 14/181 (7%)

Query: 4   SSGQSNSYDLS--FKILLIGDSGVGKSSLLVSFISSS-VDDLSPTIGVDFKIKLLTVAGK 60
           SSG+ N Y      K+ ++G+   GKS+L+  +++ + V + SP  G  FK K + V G+
Sbjct: 8   SSGRENLYFQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGG-RFK-KEIVVDGQ 65

Query: 61  RLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQD 120
              L I D  G    +     +      ++ V+ +    +F  + + +   +  +    +
Sbjct: 66  SYLLLIRDEGGPPELQ-----FAAWVDAVVFVFSLEDEISFQTVYN-YFLRLCSFRNASE 119

Query: 121 CVKMLVGNKVD--RDSERVVSREEGIALAKEHGSL-FLECSAKTRENVEQCFEQLALKIM 177
              +LVG +      + RV+       L+ +     + E  A    NVE+ F+ +A K++
Sbjct: 120 VPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVERVFQDVAQKVV 179

Query: 178 E 178
            
Sbjct: 180 A 180

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* Length = 192

 Score =  188 bits (479), Expect = 4e-61
 Identities = 47/168 (27%), Positives = 77/168 (45%), Gaps = 10/168 (5%)

Query: 15  FKILLIGDSGVGKSSLLVSFISSS---VDDLSPTIGVDFKIKLLTVAGKR---LKLTIWD 68
           ++++LIG+ GVGKS+L   F         D       D   + L V G+    + L +W+
Sbjct: 7   YRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLG-EDTYERTLMVDGESATIILLDMWE 65

Query: 69  TAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGN 128
             G+  +  L     +     ++VY +T R +F   S+    ++      +D   +LVGN
Sbjct: 66  NKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASE-LRIQLRRARQTEDIPIILVGN 122

Query: 129 KVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKI 176
           K D    R VS  EG A A      F+E SA  + NV++ FE +  ++
Sbjct: 123 KSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGIVRQV 170

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A Length = 178

 Score =  183 bits (467), Expect = 2e-59
 Identities = 37/168 (22%), Positives = 74/168 (44%), Gaps = 10/168 (5%)

Query: 15  FKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER 74
            ++ ++GD+  GKSSL+  F++ S   L  T    +K K + V G+   + I + AG   
Sbjct: 8   LRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYK-KEMLVDGQTHLVLIREEAGAPD 66

Query: 75  FRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKM---LVGNKVD 131
            +     +   A  +I V+ +    +F  +S +  +   L    +  + +      +++ 
Sbjct: 67  AK-----FSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRIS 121

Query: 132 RDSERVVSREEGIALAKEHGSL-FLECSAKTRENVEQCFEQLALKIME 178
             S RVV      AL  +     + E  A    NV++ F+++A K++ 
Sbjct: 122 ASSPRVVGDARARALXADMKRCSYYETXATYGLNVDRVFQEVAQKVVT 169

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* Length = 194

 Score =  174 bits (442), Expect = 2e-55
 Identities = 51/184 (27%), Positives = 90/184 (48%), Gaps = 7/184 (3%)

Query: 1   MGSSSGQSNSYDLSFKILLIGDSGVGKSSLLVSFISSS-VDDLSPTIGVDFKIKLLTVAG 59
           M + +G+  +   + KI+++GD  VGK+ LL++F          PT+  +F   +     
Sbjct: 10  MNTGAGKIENGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVM-KYKN 68

Query: 60  KRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQ 119
           +   L +WDTAGQE +  L    Y  +  ++L + V  R +F N+S  W  E+  Y    
Sbjct: 69  EEFILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDT- 127

Query: 120 DCVKMLVGNKVD--RDSERVVSREEGIALAKEHGSL-FLECSAKTRENVEQCFEQLALKI 176
               +LVG KVD  +D    V+++EG  L ++ G + ++E S+  +  + + FE+    I
Sbjct: 128 -AKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCI 186

Query: 177 MEVP 180
               
Sbjct: 187 FSNK 190

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} Length = 535

 Score =  176 bits (447), Expect = 1e-52
 Identities = 41/193 (21%), Positives = 71/193 (36%), Gaps = 15/193 (7%)

Query: 2   GSSSGQSNSYDLSFKILLIGDSGVGKSSLLVSFISSSVDDL-SPTIGVDFKIKLLTVA-- 58
             S G++  +    K+ LIGD   GK+SLL   I  + D   S T G++   K       
Sbjct: 29  ARSKGEALVHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKG 88

Query: 59  ------GKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEV 112
                  K      WD  GQE        +   +   +L+ D     T +N    W + +
Sbjct: 89  LENDDELKECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSR---TDSNKHY-WLRHI 144

Query: 113 DLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQL 172
           + Y        ++V NK+D +    + +++         + F   S K  + VE   + L
Sbjct: 145 EKYGGK--SPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNGDGVESIAKSL 202

Query: 173 ALKIMEVPSLLEE 185
              ++   S+   
Sbjct: 203 KSAVLHPDSIYGT 215

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C Length = 182

 Score =  157 bits (398), Expect = 5e-49
 Identities = 57/183 (31%), Positives = 96/183 (52%), Gaps = 15/183 (8%)

Query: 8   SNSYDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTI 66
           S S     K + +GD  VGK+ LL+S+ S++   D  PT+  +F    + V G  + L +
Sbjct: 2   SMSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGATVNLGL 60

Query: 67  WDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLV 126
           WDTAGQE +  L    YRGA   IL + +  + ++ N+S  W  E+  Y+       +LV
Sbjct: 61  WDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPG--VPIVLV 118

Query: 127 GNKVD-RDSERV---------VSREEGIALAKEHGSL-FLECSAKTRENVEQCFEQLALK 175
           G K+D RD ++          ++  +G  L K  G+  ++ECS+K++ENV+  F+     
Sbjct: 119 GTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAIRV 178

Query: 176 IME 178
           +++
Sbjct: 179 VLQ 181

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... Length = 201

 Score =  154 bits (391), Expect = 1e-47
 Identities = 55/192 (28%), Positives = 91/192 (47%), Gaps = 17/192 (8%)

Query: 2   GSSSGQSNSYDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGK 60
           G     S+   +  K++++GD   GK+ LL+ F      +   PT+  +  I  + V GK
Sbjct: 13  GLVPRGSHMAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVF-ENYIADIEVDGK 71

Query: 61  RLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQD 120
           +++L +WDTAGQE +  L    Y     I++ + +   ++  N+ + W  EV  +  N  
Sbjct: 72  QVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN-- 129

Query: 121 CVKMLVGNKVD------------RDSERVVSREEGIALAKEHGSL-FLECSAKTRENVEQ 167
              +LVGNK D            +  +  V  EEG  +A    +  +LECSAKT+E V +
Sbjct: 130 VPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVRE 189

Query: 168 CFEQLALKIMEV 179
            FE      ++V
Sbjct: 190 VFEMATRAGLQV 201

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} Length = 214

 Score =  154 bits (392), Expect = 1e-47
 Identities = 56/193 (29%), Positives = 96/193 (49%), Gaps = 17/193 (8%)

Query: 2   GSSSGQSNSYDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGK 60
             +  ++     S K++L+GD G GK+SLL+ F   +  +  +PT+   + +  L V GK
Sbjct: 22  SMAGEEAPPGVRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERY-MVNLQVKGK 80

Query: 61  RLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQD 120
            + L IWDTAGQ+ +  L   +Y  A  ++L +DVT   +F N+ + W  EV+ +     
Sbjct: 81  PVHLHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKK-- 138

Query: 121 CVKMLVGNKVD------------RDSERVVSREEGIALAKEHGSL-FLECSAKTRENVEQ 167
              ++VG K D            R+    V+   G  +A+  G++ +LECSA+  +NV  
Sbjct: 139 VPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHA 198

Query: 168 CFEQLALKIMEVP 180
            F++ A   +   
Sbjct: 199 VFQEAAEVALSSR 211

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} Length = 212

 Score =  154 bits (390), Expect = 2e-47
 Identities = 60/216 (27%), Positives = 104/216 (48%), Gaps = 27/216 (12%)

Query: 6   GQSNSYDLSFKILLIGDSGVGKSSLLVSFISSS-VDDLSPTIGVDFKIKLLTVAGKRLKL 64
           G   S     K + +GD  VGK+ +L+ + S+    D  PT+  +F    + V G+ + L
Sbjct: 1   GSHMSVSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGQIVNL 59

Query: 65  TIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKM 124
            +WDTAGQE +  L    YRGA   +L + +  + ++ N+   W  E+  ++ N   V +
Sbjct: 60  GLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPN---VPI 116

Query: 125 -LVGNKVD--------RDSERVVSREEGIALAKEHGSL-FLECSAKTRENVEQCFEQLAL 174
            LVG K+D         D   V++  +G  L K+ G+  ++ECS+KT++NV+  F+    
Sbjct: 117 VLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIK 176

Query: 175 KIMEVPSLLEEGSNVVKRNILKQKPENQSPPIGGCC 210
            +++ P          K    ++K   +S    GC 
Sbjct: 177 VVLQPPR--------RKEVPRRRKNHRRS----GCS 200

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} Length = 204

 Score =  146 bits (369), Expect = 2e-44
 Identities = 53/184 (28%), Positives = 91/184 (49%), Gaps = 17/184 (9%)

Query: 2   GSSSGQSNSYDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGK 60
           GS          + K +++GD  VGK+ LL+S+ +++   +  PT+  D     + V GK
Sbjct: 18  GSHMENLYFQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGK 76

Query: 61  RLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQD 120
            + L +WDTAGQE +  L    Y      ++ + +    +F N+   W  EV  +  N  
Sbjct: 77  PVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPN-- 134

Query: 121 CVKMLVGNKVD-RD-----------SERVVSREEGIALAKEHGSL-FLECSAKTRENVEQ 167
              +LVG K+D RD               ++  +G+A+AKE G++ +LECSA T+  ++ 
Sbjct: 135 TPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKT 194

Query: 168 CFEQ 171
            F++
Sbjct: 195 VFDE 198

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 207

 Score =  144 bits (366), Expect = 7e-44
 Identities = 55/187 (29%), Positives = 90/187 (48%), Gaps = 20/187 (10%)

Query: 2   GSSSGQSNSY---DLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTV 57
           G   G  N Y    +  K++++GD   GK+ LL+ F      +   PT+  ++ +  + V
Sbjct: 10  GVDLGTENLYFQSMIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENY-VADIEV 68

Query: 58  AGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYST 117
            GK+++L +WDTAGQE +  L    Y     I++ + V   ++  N+ + W  EV  +  
Sbjct: 69  DGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCP 128

Query: 118 NQDCVKMLVGNKVD-RD-----------SERVVSREEGIALAKEHGSL-FLECSAKTREN 164
           N     +LV NK D R             +  V  ++G A+A    +  +LECSAKT+E 
Sbjct: 129 N--VPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEG 186

Query: 165 VEQCFEQ 171
           V + FE 
Sbjct: 187 VREVFET 193

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... Length = 186

 Score =  143 bits (363), Expect = 1e-43
 Identities = 50/180 (27%), Positives = 88/180 (48%), Gaps = 15/180 (8%)

Query: 14  SFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQE 73
           + K +++GD  VGK+ LL+S+ +++          D     + V GK + L +WDTAGQE
Sbjct: 5   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQE 64

Query: 74  RFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVD-R 132
            +  L    Y      ++ + +    +F N+   W  EV  +  N     +LVG K+D R
Sbjct: 65  DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPN--TPIILVGTKLDLR 122

Query: 133 D-----------SERVVSREEGIALAKEHGSL-FLECSAKTRENVEQCFEQLALKIMEVP 180
           D               ++  +G+A+AKE G++ +LECSA T+  ++  F++    ++  P
Sbjct: 123 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPP 182

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} Length = 201

 Score =  144 bits (364), Expect = 1e-43
 Identities = 50/194 (25%), Positives = 91/194 (46%), Gaps = 17/194 (8%)

Query: 2   GSSSGQSNSYDLSFKILLIGDSGVGKSSLLVSFISSS-VDDLSPTIGVDFKIKLLTVAGK 60
           G       +     K +L+GD  VGK+SL+VS+ ++    +  PT   D    +++V G+
Sbjct: 8   GGRGRAGGAEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTA-FDNFSAVVSVDGR 66

Query: 61  RLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQD 120
            ++L + DTAGQ+ F  L    Y      +L + V    +F N+S+ W  E+  +     
Sbjct: 67  PVRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPK-- 124

Query: 121 CVKMLVGNKVD------------RDSERVVSREEGIALAKEHGSL-FLECSAKTRENVEQ 167
              +LVG + D            +  E+ V  E    LA+E  +  ++ECSA T++N+++
Sbjct: 125 APIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKE 184

Query: 168 CFEQLALKIMEVPS 181
            F+   +  ++   
Sbjct: 185 VFDAAIVAGIQYSD 198

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 Length = 205

 Score =  142 bits (361), Expect = 3e-43
 Identities = 47/186 (25%), Positives = 90/186 (48%), Gaps = 18/186 (9%)

Query: 1   MGSSSGQSNSYDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAG 59
           +   S    + ++  KI+++GDS  GK++LL  F      ++  PT+  ++      +  
Sbjct: 15  VPRGSHMDPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASF-EIDT 73

Query: 60  KRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQ 119
           +R++L++WDT+G   +  +    Y  +  +++ +D++R ET  ++   W  E+  +  N 
Sbjct: 74  QRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPN- 132

Query: 120 DCVKMLVGNKVD-RD-----------SERVVSREEGIALAKEHGSL-FLECSAKTREN-V 165
               +LVG K D R             +  VS ++G  +AK+ G+  ++ECSA   EN V
Sbjct: 133 -TKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSV 191

Query: 166 EQCFEQ 171
              F  
Sbjct: 192 RDIFHV 197

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 Length = 194

 Score =  138 bits (349), Expect = 2e-41
 Identities = 55/184 (29%), Positives = 95/184 (51%), Gaps = 17/184 (9%)

Query: 2   GSSSGQSNSYDLSFKILLIGDSGVGKSSLLVSFISSS-VDDLSPTIGVDFKIKLLTVAGK 60
           G SS       L  K +++GD  VGK+ LL+S+ + +  ++  PT+  D     +TV GK
Sbjct: 6   GRSSMAHGPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVGGK 64

Query: 61  RLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQD 120
           +  L ++DTAGQE +  L    Y      ++ + V    +F N+ + W  E+  Y+ N  
Sbjct: 65  QYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPN-- 122

Query: 121 CVKMLVGNKVD-RD-----------SERVVSREEGIALAKEHGSL-FLECSAKTRENVEQ 167
              +L+G ++D RD            E+ +  E+G  LAKE G+  ++ECSA T++ ++ 
Sbjct: 123 VPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKT 182

Query: 168 CFEQ 171
            F++
Sbjct: 183 VFDE 186

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* Length = 184

 Score =  137 bits (346), Expect = 4e-41
 Identities = 45/175 (25%), Positives = 86/175 (49%), Gaps = 18/175 (10%)

Query: 12  DLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTA 70
           ++  KI+++GDS  GK++LL  F      ++  PT+  ++      +  +R++L++WDT+
Sbjct: 5   NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASF-EIDTQRIELSLWDTS 63

Query: 71  GQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKV 130
           G   +  +    Y  +  +++ +D++R ET  ++   W  E+  +  N     +LVG K 
Sbjct: 64  GSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPN--TKMLLVGCKS 121

Query: 131 D------------RDSERVVSREEGIALAKEHGSL-FLECSAKTREN-VEQCFEQ 171
           D               +  VS ++G  +AK+ G+  ++ECSA   EN V   F  
Sbjct: 122 DLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHV 176

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* Length = 214

 Score =  137 bits (347), Expect = 5e-41
 Identities = 51/203 (25%), Positives = 93/203 (45%), Gaps = 27/203 (13%)

Query: 3   SSSGQSNSY---------DLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKI 52
            SSG+ N Y             K++L+GD   GK+++L         +   PT+  ++  
Sbjct: 7   HSSGRENLYFQGRAPQPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-T 65

Query: 53  KLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEV 112
             L    +R++L++WDT+G   +  +    Y  +  ++L +D++R ET  +    W  E+
Sbjct: 66  ACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEI 125

Query: 113 DLYSTNQDCVKMLVGNKVD-RD-----------SERVVSREEGIALAKEHGSL-FLECSA 159
             Y  +     +L+G K D R             +  +S E+G A+AK+ G+  +LE SA
Sbjct: 126 LDYCPS--TRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSA 183

Query: 160 KTRE-NVEQCFEQLALKIMEVPS 181
            T E ++   F   ++  +  PS
Sbjct: 184 FTSEKSIHSIFRTASMLCLNKPS 206

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens} Length = 255

 Score =  112 bits (281), Expect = 1e-30
 Identities = 41/221 (18%), Positives = 63/221 (28%), Gaps = 67/221 (30%)

Query: 21  GDSGVGKSSLLVSFISSSVDD-----LSPTIGVDFKIKLL--------------TVAGKR 61
           G  G+GKS L   F+  S D+      S     DF  +++                    
Sbjct: 35  GQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVE 94

Query: 62  LKLTIW-------DTAGQERFRTLTSSYYRGA---------------------------- 86
            K+ I        D   Q    T    Y + A                            
Sbjct: 95  CKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQK 154

Query: 87  ---------QGIILVYDVTR--RETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSE 135
                     G +L  DV+R     F +    +   +           ++V  K D   E
Sbjct: 155 QMPDGKLLVDGFLLGIDVSRGMNRNFDDQLK-FVSNLYNQLAKTKKPIVVVLTKCDEGVE 213

Query: 136 RVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKI 176
           R +      AL+K+     +E SA++  NV+  F  L   I
Sbjct: 214 RYIRDAHTFALSKK-NLQVVETSARSNVNVDLAFSTLVQLI 253

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A* Length = 332

 Score =  107 bits (268), Expect = 4e-28
 Identities = 47/171 (27%), Positives = 84/171 (49%), Gaps = 17/171 (9%)

Query: 15  FKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER 74
            K +++GD  VGK+ LL+S+ +++          D     + V GK + L +WDTAG E 
Sbjct: 156 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLED 215

Query: 75  FRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVK-MLVGNKVD-R 132
           +  L    Y      ++ + +    +F ++   W  EV  +  N      +LVG K+D R
Sbjct: 216 YDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPN---TPIILVGTKLDLR 272

Query: 133 DSERV-----------VSREEGIALAKEHGSL-FLECSAKTRENVEQCFEQ 171
           D +             ++  +G+A+AKE G++ +LECSA T+  ++  F++
Sbjct: 273 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 323

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* Length = 198

 Score =  100 bits (251), Expect = 1e-26
 Identities = 35/183 (19%), Positives = 67/183 (36%), Gaps = 18/183 (9%)

Query: 12  DLSFKILLIGDSGVGKSSLL-----------VSFISSSVDDLSPTIGVDF-KIKLLTVAG 59
           +++FKI+  G    GK++ L              + S   +   T+  DF  + +  V G
Sbjct: 12  EINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKG 71

Query: 60  KRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLS--DVWAKEVDLYST 117
            + +  ++   GQ  +        RG  GI+ V D        N        + +  Y  
Sbjct: 72  FKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGL 131

Query: 118 NQDCVKMLVG-NKVDRDSERVVSREE-GIALAKEHGSLFLECSAKTRENVEQCFEQLALK 175
             D V +++  NK  RD    +  E     +  E     LE  A   + V +  ++++  
Sbjct: 132 TLDDVPIVIQVNK--RDLPDALPVEMVRAVVDPEGKFPVLEAVATEGKGVFETLKEVSRL 189

Query: 176 IME 178
           ++ 
Sbjct: 190 VLA 192

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* Length = 181

 Score = 80.4 bits (199), Expect = 3e-19
 Identities = 46/189 (24%), Positives = 79/189 (41%), Gaps = 21/189 (11%)

Query: 1   MGSSSGQ----SNSYDLS---FKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIK 53
           MGSS       S          K++++G    GK+++L  F  + V   SPTIG    ++
Sbjct: 1   MGSSHHHHHHSSGLVPRGSQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIG--SNVE 58

Query: 54  LLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAK--- 110
              +     +  +WD  GQE  R+  ++YY   + +I+V D T RE  +   +   K   
Sbjct: 59  --EIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLA 116

Query: 111 EVDLYSTNQDCVKMLVGNKVDRD---SERVVSREEGIALAKEHGSLFLECSAKTRENVEQ 167
             DL    +    ++  NK D     +   +S+   +   K+H      C A T E + Q
Sbjct: 117 HEDL----RKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQ 172

Query: 168 CFEQLALKI 176
             E +  ++
Sbjct: 173 GLEWMMSRL 181

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 187

 Score = 80.0 bits (198), Expect = 4e-19
 Identities = 42/191 (21%), Positives = 76/191 (39%), Gaps = 28/191 (14%)

Query: 15  FKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER 74
            K++++G    GK+++L  F  + V   SPTIG    ++   +     +  +WD  GQE 
Sbjct: 17  HKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIG--SNVE--EIVINNTRFLMWDIGGQES 72

Query: 75  FRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAK---EVDLYSTNQDCVKMLVGNKVD 131
            R+  ++YY   + +I+V D T RE  +   +   K     DL    +    ++  NK D
Sbjct: 73  LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDL----RKAGLLIFANKQD 128

Query: 132 RD---SERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIMEVPSLLEEGSN 188
                +   +S+   +   K+H      C A T E + Q  E +               +
Sbjct: 129 VKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWM--------------MS 174

Query: 189 VVKRNILKQKP 199
            +K  +     
Sbjct: 175 RLKIRLEHHHH 185

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* Length = 171

 Score = 78.4 bits (194), Expect = 1e-18
 Identities = 39/168 (23%), Positives = 68/168 (40%), Gaps = 20/168 (11%)

Query: 15  FKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER 74
            +IL++G  G GK+++L       V    PTIG  F ++  TV  K LK  +WD  G   
Sbjct: 8   MRILILGLDGAGKTTILYRLQVGEVVTTIPTIG--FNVE--TVTYKNLKFQVWDLGGLTS 63

Query: 75  FRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWA------KEVDLYSTNQDCVKMLVGN 128
            R     YY     +I V D   R+    +    +      +E +L    +  + ++  N
Sbjct: 64  IRPYWRCYYSNTDAVIYVVDSCDRD---RIGISKSELVAMLEEEEL----RKAILVVFAN 116

Query: 129 KVDRD---SERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLA 173
           K D +   +   ++   G+   K+      + SA     +++  E L 
Sbjct: 117 KQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLV 164

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* Length = 186

 Score = 77.7 bits (192), Expect = 3e-18
 Identities = 44/168 (26%), Positives = 70/168 (41%), Gaps = 14/168 (8%)

Query: 15  FKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER 74
            ++L++G    GK+++L  F    VD +SPT+G  F IK  T+  +  KL IWD  GQ+ 
Sbjct: 19  LRLLMLGLDNAGKTTILKKFNGEDVDTISPTLG--FNIK--TLEHRGFKLNIWDVGGQKS 74

Query: 75  FRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAK---EVDLYSTNQDCVKMLVGNKVD 131
            R+   +Y+    G+I V D   R+   +          E  L         ++  NK D
Sbjct: 75  LRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERL----AGATLLIFANKQD 130

Query: 132 RD---SERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKI 176
                S   +     +   + H      CSA T E++    + L   I
Sbjct: 131 LPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDI 178

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 183

 Score = 76.5 bits (189), Expect = 9e-18
 Identities = 47/171 (27%), Positives = 74/171 (43%), Gaps = 20/171 (11%)

Query: 15  FKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER 74
            +IL++G  G GK+++L       V    PTIG  F ++  T++ K LKL +WD  GQ  
Sbjct: 19  LRILILGLDGAGKTTILYRLQIGEVVTTKPTIG--FNVE--TLSYKNLKLNVWDLGGQTS 74

Query: 75  FRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWA------KEVDLYSTNQDCVKMLVGN 128
            R     YY     +I V D T ++    +S          +E +L    QD   ++  N
Sbjct: 75  IRPYWRCYYADTAAVIFVVDSTDKD---RMSTASKELHLMLQEEEL----QDAALLVFAN 127

Query: 129 KVDRD---SERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKI 176
           K D+    S   VS+E  +   K+     +  SA   E + +  + L   I
Sbjct: 128 KQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVI 178

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... Length = 164

 Score = 75.7 bits (187), Expect = 1e-17
 Identities = 39/167 (23%), Positives = 75/167 (44%), Gaps = 14/167 (8%)

Query: 16  KILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERF 75
           +IL++G    GK+++L       +    PTIG  F ++  TV  K +  T+WD  GQ++ 
Sbjct: 2   RILMVGLDAAGKTTILYKLKLGEIVTTIPTIG--FNVE--TVEYKNISFTVWDVGGQDKI 57

Query: 76  RTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAK---EVDLYSTNQDCVKMLVGNKVDR 132
           R L   Y++  QG+I V D   RE      +   +   E +L    +D V ++  NK D 
Sbjct: 58  RPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDEL----RDAVLLVFANKQDL 113

Query: 133 D---SERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKI 176
               +   ++ + G+   +          A + + + +  + L+ ++
Sbjct: 114 PNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 160

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} Length = 189

 Score = 76.1 bits (188), Expect = 1e-17
 Identities = 35/168 (20%), Positives = 68/168 (40%), Gaps = 20/168 (11%)

Query: 15  FKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER 74
            ++L++G    GK+S+L       V    PT+G    ++  T+  K +   +WD  GQ  
Sbjct: 23  IRVLMLGLDNAGKTSILYRLHLGDVVTTVPTVG--VNLE--TLQYKNISFEVWDLGGQTG 78

Query: 75  FRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWA------KEVDLYSTNQDCVKMLVGN 128
            R     Y+     +I V D T R+    +            E +L    +  + ++  N
Sbjct: 79  VRPYWRCYFSDTDAVIYVVDSTDRD---RMGVAKHELYALLDEDEL----RKSLLLIFAN 131

Query: 129 KVDRD---SERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLA 173
           K D     SE  ++ + G++         ++ S+KT + + +  + L 
Sbjct: 132 KQDLPDAASEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLVEGMDWLV 179

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} Length = 190

 Score = 75.0 bits (185), Expect = 4e-17
 Identities = 44/192 (22%), Positives = 75/192 (39%), Gaps = 23/192 (11%)

Query: 1   MGSSSGQ----SNSYDLS---FKILLIGDSGVGKSSLLVSFISSSVD--DLSPTIGVDFK 51
           MGSS       S           +L +G    GK++++     S+    ++ PTIG  F 
Sbjct: 1   MGSSHHHHHHSSGLVPRGSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG--FS 58

Query: 52  IKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETF----TNLSDV 107
           I+        L  T++D +GQ R+R L   YY+  Q II V D + R         L  +
Sbjct: 59  IE--KFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTL 116

Query: 108 WAKEVDLYSTNQDCVKMLVGNKVDRD---SERVVSREEGIALAKEHGSLFLECSAKTREN 164
                D+   ++    +   NK+D     +   VS+   +   K+         A   E 
Sbjct: 117 LNHP-DI--KHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWHICASDAIKGEG 173

Query: 165 VEQCFEQLALKI 176
           +++  + L  +I
Sbjct: 174 LQEGVDWLQDQI 185

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* Length = 192

 Score = 74.6 bits (184), Expect = 5e-17
 Identities = 38/165 (23%), Positives = 70/165 (42%), Gaps = 8/165 (4%)

Query: 15  FKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER 74
            +IL++G    GK+++L       +    PTIG  F ++  TV  K +  T+WD  GQ++
Sbjct: 30  MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG--FNVE--TVEYKNICFTVWDVGGQDK 85

Query: 75  FRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRD- 133
            R L   Y++  QG+I V D   RE     S    +++      +D V ++  NK D   
Sbjct: 86  IRPLWRHYFQNTQGLIFVVDSNDRERV-QESADELQKMLQEDELRDAVLLVFANKQDMPN 144

Query: 134 --SERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKI 176
                 ++ + G+   +          A     +    + L+ ++
Sbjct: 145 AMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHEL 189

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* Length = 188

 Score = 74.5 bits (184), Expect = 5e-17
 Identities = 41/189 (21%), Positives = 79/189 (41%), Gaps = 25/189 (13%)

Query: 1   MGSSSGQSN-SYDLS-------FKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFK 51
           MGSS    + S  L         ++ L+G    GK++ +    S    +D+ PT+G  F 
Sbjct: 1   MGSSHHHHHHSSGLVPRGSKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVG--FN 58

Query: 52  IKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTN----LSDV 107
           ++   +    + + +WD  GQ RFR++   Y RG   I+ + D   +E        L ++
Sbjct: 59  MR--KITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNL 116

Query: 108 WAKEVDLYSTNQDCVKMLVGNKVDRD---SERVVSREEGIALAKEHGSLFLECSAKTREN 164
             K        Q    +++GNK D      E+ +  +  ++  ++        S K ++N
Sbjct: 117 LDKP-----QLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDN 171

Query: 165 VEQCFEQLA 173
           ++   + L 
Sbjct: 172 IDITLQWLI 180

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* Length = 181

 Score = 74.5 bits (184), Expect = 5e-17
 Identities = 41/168 (24%), Positives = 66/168 (39%), Gaps = 14/168 (8%)

Query: 15  FKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER 74
            +ILL+G    GK++LL    S  +  ++PT G  F IK  +V  +  KL +WD  GQ +
Sbjct: 17  VRILLLGLDNAGKTTLLKQLASEDISHITPTQG--FNIK--SVQSQGFKLNVWDIGGQRK 72

Query: 75  FRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAK---EVDLYSTNQDCVKMLVGNKVD 131
            R    SY+     +I V D   R+ F        +   E  L         ++  NK D
Sbjct: 73  IRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKL----SCVPVLIFANKQD 128

Query: 132 RD---SERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKI 176
                    ++    +   ++       CSA T E V+     +   +
Sbjct: 129 LLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNV 176

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 307

 Score = 75.8 bits (186), Expect = 1e-16
 Identities = 39/187 (20%), Positives = 74/187 (39%), Gaps = 20/187 (10%)

Query: 16  KILLIGDSGVGKSSLL-VSFISSSVDD---LSPTIGVDFKIKLLTVAGKRLKLTIWDTAG 71
           K+LL+G SG GKSS+  + F + S  D   L  TI V+            + L +WD  G
Sbjct: 5   KLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRF---LGNMTLNLWDCGG 61

Query: 72  QERF-----RTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLV 126
           Q+ F            ++  Q +I V+DV   E   ++         L   + D    ++
Sbjct: 62  QDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVL 121

Query: 127 GNKVD--RDSERVVSREEGIALAKEH------GSLFLECSAKTRENVEQCFEQLALKIME 178
            +K+D  +  +R    +  +    E        +L    ++   E++ + + Q+   ++ 
Sbjct: 122 LHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFPTSIWDESLYKAWSQIVCSLIP 181

Query: 179 VPSLLEE 185
             S  + 
Sbjct: 182 NMSNHQS 188

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* Length = 190

 Score = 72.2 bits (178), Expect = 4e-16
 Identities = 38/175 (21%), Positives = 67/175 (38%), Gaps = 25/175 (14%)

Query: 14  SFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQE 73
             K+L +G    GK++LL    +  +  L PT       +   +A   +K T +D  G  
Sbjct: 23  HGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWH--PTSE--ELAIGNIKFTTFDLGGHI 78

Query: 74  RFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYS-----TNQDCVKMLVGN 128
           + R L   Y+    GI+ + D    E F       A+  +L +       +D   +++GN
Sbjct: 79  QARRLWKDYFPEVNGIVFLVDAADPERFDE-----ARV-ELDALFNIAELKDVPFVILGN 132

Query: 129 KVDRD---SERVVSREEGIALAKEHGSLFLE-------CSAKTRENVEQCFEQLA 173
           K+D     SE  +    G+        +  +       CS   R    + F+ L+
Sbjct: 133 KIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLS 187

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* Length = 198

 Score = 72.3 bits (178), Expect = 5e-16
 Identities = 35/176 (19%), Positives = 64/176 (36%), Gaps = 26/176 (14%)

Query: 16  KILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERF 75
           K++ +G    GK++LL       +    PT+      +   +    +  T +D  G  + 
Sbjct: 27  KLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLH--PTSE--ELTIAGMTFTTFDLGGHIQA 82

Query: 76  RTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDL---YSTNQDCVKMLVGNKVDR 132
           R +  +Y     GI+ + D    E          +E+D      T  +   +++GNK+DR
Sbjct: 83  RRVWKNYLPAINGIVFLVDCADHERL----LESKEELDSLMTDETIANVPILILGNKIDR 138

Query: 133 ----DSERVVSREEGIALAKEHGSLFLE-----------CSAKTRENVEQCFEQLA 173
                 ER+             GS+ L+           CS   R+   + F  +A
Sbjct: 139 PEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMA 194

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* Length = 196

 Score = 69.6 bits (170), Expect = 4e-15
 Identities = 31/145 (21%), Positives = 48/145 (33%), Gaps = 19/145 (13%)

Query: 1   MGSSSGQSNSYDLSF------KILLIGDSGVGKSS----LLVSFISSSVDDLSPTIGVDF 50
           M      S+  +  +      +ILL+G    GKSS    +      +    L  T  +  
Sbjct: 1   MHHHHHHSSGRENLYFQGSKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYK 60

Query: 51  KIKLLTVAGKR-LKLTIWDTAGQERFRTLTS---SYYRGAQGIILVYDVTRRETFTNLSD 106
                 ++    +   IWD  GQ  F   T      +RG   +I V D         L+ 
Sbjct: 61  D----DISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEA-LTR 115

Query: 107 VWAKEVDLYSTNQDCVKMLVGNKVD 131
           +       Y  N D    +  +KVD
Sbjct: 116 LHITVSKAYKVNPDMNFEVFIHKVD 140

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} Length = 329

 Score = 68.8 bits (168), Expect = 5e-14
 Identities = 39/179 (21%), Positives = 77/179 (43%), Gaps = 20/179 (11%)

Query: 7   QSNSYDLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTI 66
           +        +IL++G    GK+++L       +    PTIG  F ++  TV  K +  T+
Sbjct: 158 RGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG--FNVE--TVEYKNISFTV 213

Query: 67  WDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWA------KEVDLYSTNQD 120
           WD  GQ++ R L   Y++  QG+I V D   RE    +++          E +L    +D
Sbjct: 214 WDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRE---RVNEAREELMRMLAEDEL----RD 266

Query: 121 CVKMLVGNKVDRD---SERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKI 176
            V ++  NK D     +   ++ + G+   +          A + + + +  + L+ ++
Sbjct: 267 AVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 325

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 Length = 214

 Score = 61.7 bits (150), Expect = 4e-12
 Identities = 26/122 (21%), Positives = 46/122 (37%), Gaps = 10/122 (8%)

Query: 16  KILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKR-LKLTIWDTAGQER 74
            +L +G    GK+ L V  ++    D   +I       +  V   R   LT+ D  G E 
Sbjct: 9   AVLFVGLCDSGKTLLFVRLLTGQYRDTQTSIT--DSSAIYKVNNNRGNSLTLIDLPGHES 66

Query: 75  FR-TLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTN---QDCVKMLV-GNK 129
            R  L   +   A+ ++ V D    +    + DV      +   +   ++   +L+  NK
Sbjct: 67  LRFQLLDRFKSSARAVVFVVDSAAFQ--REVKDVAEFLYQVLIDSMALKNSPSLLIACNK 124

Query: 130 VD 131
            D
Sbjct: 125 QD 126

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} Length = 193

 Score = 58.2 bits (141), Expect = 6e-11
 Identities = 20/95 (21%), Positives = 32/95 (33%), Gaps = 9/95 (9%)

Query: 4   SSGQSNSYDLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLK 63
             G          I++ G    GK+SLL    + SV     +        L         
Sbjct: 38  GGGSGGGGSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQE-----PLSAADYDGSG 92

Query: 64  LTIWDTAGQERFRTLTSSYYR----GAQGIILVYD 94
           +T+ D  G  + R   S Y +      +G+I + D
Sbjct: 93  VTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVD 127

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 218

 Score = 55.9 bits (135), Expect = 6e-10
 Identities = 29/140 (20%), Positives = 50/140 (35%), Gaps = 19/140 (13%)

Query: 2   GSSSGQSNSYDLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKR 61
           GS  G          I++ G    GK+SLL    + SV     +        L       
Sbjct: 1   GSHMGIKQK-SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQE-----PLSAADYDG 54

Query: 62  LKLTIWDTAGQERFRTLTSSYY----RGAQGIILVYD-VTRRETFTNLSDVWAKEVDLYS 116
             +T+ D  G  + R   S Y     +  +G+I + D     +    L+      VD+ S
Sbjct: 55  SGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPK---KLTTTAEFLVDILS 111

Query: 117 TNQ----DCVKMLV-GNKVD 131
             +    + + +L+  NK +
Sbjct: 112 ITESSCENGIDILIACNKSE 131

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 331

 Score = 56.2 bits (135), Expect = 1e-09
 Identities = 23/124 (18%), Positives = 44/124 (35%), Gaps = 9/124 (7%)

Query: 17  ILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFR 76
           +LL+G    GKSS+      +     +  +       L   +   + L + +  GQ  + 
Sbjct: 2   VLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHFSTL-IDLAVMELPGQLNYF 60

Query: 77  TLT---SSYYRGAQGIILVYDVTR--RETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVD 131
             +      ++    ++ V D         TNL+ +       Y  N      ++ +KVD
Sbjct: 61  EPSYDSERLFKSVGALVYVIDSQDEYINAITNLAMIIEY---AYKVNPSINIEVLIHKVD 117

Query: 132 RDSE 135
             SE
Sbjct: 118 GLSE 121

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 55.6 bits (133), Expect = 2e-09
 Identities = 30/215 (13%), Positives = 59/215 (27%), Gaps = 70/215 (32%)

Query: 7   QSNSYDLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTI 66
           +         +L+ G  G GK+ +                 +DFKI              
Sbjct: 148 RPAKN-----VLIDGVLGSGKTWV----ALDVCLSYKVQCKMDFKI-------------F 185

Query: 67  WDTAGQER-----FRTLTSSYYR----------GAQGIILVYDVTR---RETFTN----- 103
           W               L    Y+           +  I L     +   R    +     
Sbjct: 186 WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN 245

Query: 104 ----LSDVWAKEV----DLYSTNQDCVKMLVGNKVDRDSE--RVVSREEGIALAKEHGSL 153
               L +V   +     +L      C K+L+     R  +    +S      ++ +H S+
Sbjct: 246 CLLVLLNVQNAKAWNAFNL-----SC-KILL---TTRFKQVTDFLSAATTTHISLDHHSM 296

Query: 154 FLECSAKTRENVEQCFEQ-LALKIMEVPSLLEEGS 187
            L     T + V+    + L  +  ++P  +   +
Sbjct: 297 TL-----TPDEVKSLLLKYLDCRPQDLPREVLTTN 326

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} Length = 427

 Score = 46.3 bits (109), Expect = 3e-06
 Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 5/63 (7%)

Query: 14  SFKILLIGDSGVGKSSLLVSFISSSVDD-----LSPTIGVDFKIKLLTVAGKRLKLTIWD 68
            F IL +G++G+GKS+L+ +  ++  +        P + +      L  +  RLKLTI  
Sbjct: 42  CFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVS 101

Query: 69  TAG 71
           T G
Sbjct: 102 TVG 104

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* Length = 301

 Score = 43.6 bits (102), Expect = 2e-05
 Identities = 17/78 (21%), Positives = 37/78 (47%), Gaps = 10/78 (12%)

Query: 15 FKILLIGDSGVGKSSLLVSFISSSV----------DDLSPTIGVDFKIKLLTVAGKRLKL 64
          F ++++G+SG+GKS+L+ S   + +          + +  T+ ++     +   G +L+L
Sbjct: 19 FTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRL 78

Query: 65 TIWDTAGQERFRTLTSSY 82
          T+ DT G          +
Sbjct: 79 TVVDTPGYGDAINCRDCF 96

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* Length = 262

 Score = 41.4 bits (97), Expect = 9e-05
 Identities = 33/213 (15%), Positives = 60/213 (28%), Gaps = 43/213 (20%)

Query: 14  SFKILLIGDSGVGKSSLL----------VSFISSSVDDLSPTIGVDFKIKLLTVAGKRLK 63
           S  +L++G  GVGKSS +          VS   +                  T+ G    
Sbjct: 36  SMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSR--------TMGGF--T 85

Query: 64  LTIWDTAG-----------QERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEV 112
           + I DT G            E  +    +  R    ++ V  +           V     
Sbjct: 86  INIIDTPGLVEAGYVNHQALELIKGFLVN--RTIDVLLYVDRLDVYAVDELDKQVVIAIT 143

Query: 113 DLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQL 172
             +     C  +LV           +S E   +   +     +   +K R        + 
Sbjct: 144 QTFGKEIWCKTLLVLTHAQFSPPDELSYETFSSKRSDSLLKTIRAGSKMR--------KQ 195

Query: 173 ALKIMEVPSLLEEGSNVVKRNILKQK--PENQS 203
             +   +  +  E S    +N   +K  P  ++
Sbjct: 196 EFEDSAIAVVYAENSGRCSKNDKDEKALPNGEA 228

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A* Length = 274

 Score = 40.1 bits (93), Expect = 2e-04
 Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 9/66 (13%)

Query: 15 FKILLIGDSGVGKSSLLVSFISSSVDD---------LSPTIGVDFKIKLLTVAGKRLKLT 65
          F ++++G+SG+GKS+L+ S   + +           +  T+ V+    L+   G +L LT
Sbjct: 9  FTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLT 68

Query: 66 IWDTAG 71
          I DT G
Sbjct: 69 IVDTPG 74

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* Length = 270

 Score = 39.9 bits (93), Expect = 3e-04
 Identities = 36/208 (17%), Positives = 62/208 (29%), Gaps = 46/208 (22%)

Query: 14  SFKILLIGDSGVGKSSLL----------VSFISSSVDDLSPTIGVDFKIKLLTVAGKRLK 63
           S  IL++G  GVGKSS +          +S   S                  + AG    
Sbjct: 39  SLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSR--------SRAGF--T 88

Query: 64  LTIWDTAG-----------QERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEV 112
           L I DT G               ++      +    ++ V D        NL  + AK +
Sbjct: 89  LNIIDTPGLIEGGYINDMALNIIKSFLLD--KTIDVLLYV-DRLDAYRVDNLDKLVAKAI 145

Query: 113 -DLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQC-FE 170
            D +        ++            +  +E           F + S    + V      
Sbjct: 146 TDSFGKGIWNKAIVALTHAQFSPPDGLPYDE----------FFSKRSEALLQVVRSGASL 195

Query: 171 QLALKIMEVPSLLEEGSNVVKRNILKQK 198
           +   +  ++P +L E S    +N   +K
Sbjct: 196 KKDAQASDIPVVLIENSGRCNKNDSDEK 223

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	211
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	100.0
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	100.0
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	100.0
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	100.0
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	100.0
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	100.0
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	100.0
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	100.0
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	100.0
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	100.0
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	100.0
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	100.0
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	100.0
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	100.0
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	100.0
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	100.0
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	100.0
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	100.0
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	100.0
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	100.0
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	100.0
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	100.0
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	100.0
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	100.0
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	100.0
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	100.0
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	100.0
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	100.0
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	100.0
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	100.0
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	100.0
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	100.0
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	100.0
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	100.0
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	100.0
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	100.0
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	100.0
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	100.0
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	100.0
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	100.0
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	100.0
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	100.0
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	100.0
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	100.0
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	100.0
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	100.0
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	100.0
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	100.0
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	100.0
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	100.0
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	100.0
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	100.0
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	100.0
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	100.0
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	100.0
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	100.0
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	100.0
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	100.0
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	100.0
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	100.0
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	100.0
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	100.0
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	100.0
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	100.0
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	100.0
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	100.0
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	100.0
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	100.0
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	100.0
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	100.0
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	100.0
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	100.0
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	100.0
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	100.0
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	100.0
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	100.0
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	100.0
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	100.0
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	100.0
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.98
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	99.98
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	99.98
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	99.98
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	99.97
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	99.97
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	99.97
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	99.97
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	99.97
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	99.97
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	99.97
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	99.97
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	99.97
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	99.97
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	99.97
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	99.97
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	99.97
3llu_A	196	RAS-related GTP-binding protein C; structural geno	99.97
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	99.97
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	99.96
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.93
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	99.96
2fh5_B	214	SR-beta, signal recognition particle receptor beta	99.96
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.96
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	99.95
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	99.95
2wji_A	165	Ferrous iron transport protein B homolog; membrane	99.95
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	99.95
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	99.95
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	99.95
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	99.95
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	99.95
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	99.94
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	99.94
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	99.94
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	99.94
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	99.94
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	99.94
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	99.93
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	99.93
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	99.93
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	99.92
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	99.92
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	99.92
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	99.92
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	99.92
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.92
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.91
1nrj_B	218	SR-beta, signal recognition particle receptor beta	99.91
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	99.9
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	99.9
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	99.9
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	99.9
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	99.9
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.89
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	99.89
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.89
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	99.89
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	99.89
1wb1_A	482	Translation elongation factor SELB; selenocysteine	99.88
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	99.88
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	99.88
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	99.88
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.88
3ohm_A	327	Guanine nucleotide-binding protein G(Q) subunit A;	99.88
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	99.87
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	99.87
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	99.87
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	99.87
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.87
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	99.87
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	99.87
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	99.86
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	99.86
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	99.86
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	99.86
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	99.86
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	99.85
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	99.85
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	99.85
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	99.85
4fid_A	340	G protein alpha subunit; RAS-like domain, all-heli	99.85
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	99.85
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	99.85
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	99.85
2ged_A	193	SR-beta, signal recognition particle receptor beta	99.85
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	99.84
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	99.84
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	99.83
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	99.83
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	99.83
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	99.82
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	99.82
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	99.82
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	99.82
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	99.82
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	99.8
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	99.79
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	99.79
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	99.79
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	99.78
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	99.78
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	99.77
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	99.77
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	99.75
1wxq_A	397	GTP-binding protein; structural genomics, riken st	99.75
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	99.74
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	99.74
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	99.74
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	99.74
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	99.71
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	99.7
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	99.68
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	99.68
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	99.66
2hf9_A	226	Probable hydrogenase nickel incorporation protein	99.65
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	99.65
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	99.63
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	99.62
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	99.61
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	99.6
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	99.6
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	99.58
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	99.56
3j25_A	638	Tetracycline resistance protein TETM; antibiotic r	99.53
4fn5_A	709	EF-G 1, elongation factor G 1; translation, transl	99.5
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	99.49
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	99.45
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	99.43
3l82_B	227	F-box only protein 4; TRFH domain, helix, GTPase d	99.39
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	99.34
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	99.31
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	99.23
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	99.04
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	98.99
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	98.99
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	98.99
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	98.94
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	98.92
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.86
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	98.84
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	98.83
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.81
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.74
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	98.6
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	98.47
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.43
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	98.3
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	98.29
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	98.24
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	98.19
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	98.18
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	98.12
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	98.09
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	97.95
3q5d_A	447	Atlastin-1; G protein, GTPase, GDP/GTP binding, hy	97.89
2xxa_A	433	Signal recognition particle protein; protein trans	97.65
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	97.57
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	97.48
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	97.48
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	97.43
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	97.36
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	97.35
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	97.34
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	97.34
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	97.3
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	97.3
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	97.29
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	97.28
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	97.27
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	97.26
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	97.24
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	97.24
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	97.23
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	97.2
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	97.18
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	97.16
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	97.15
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	97.15
3cwq_A	209	Para family chromosome partitioning protein; alpha	97.14
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	97.14
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	97.13
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	97.12
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	97.11
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	97.11
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	97.1
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	97.1
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	97.09
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	97.08
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	97.08
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	97.07
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	97.07
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	97.06
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	97.04
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	97.03
1b0u_A	262	Histidine permease; ABC transporter, transport pro	97.03
1sgw_A	214	Putative ABC transporter; structural genomics, P p	97.02
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	97.02
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	97.02
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	97.0
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	97.0
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	97.0
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	97.0
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	97.0
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	96.99
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	96.99
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	96.99
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	96.99
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	96.99
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	96.98
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	96.98
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	96.98
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	96.98
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	96.98
1g6h_A	257	High-affinity branched-chain amino acid transport	96.97
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	96.97
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	96.97
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	96.97
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	96.96
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	96.96
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	96.96
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	96.95
2eyu_A	261	Twitching motility protein PILT; pilus retraction	96.95
1ji0_A	240	ABC transporter; ATP binding protein, structural g	96.95
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	96.95
2ghi_A	260	Transport protein; multidrug resistance protein, M	96.94
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	96.94
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	96.94
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	96.94
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	96.94
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	96.93
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	96.93
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	96.92
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	96.92
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	96.92
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	96.91
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	96.91
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	96.91
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	96.9
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	96.9
4a74_A	231	DNA repair and recombination protein RADA; hydrola	96.89
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	96.89
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	96.88
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	96.86
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	96.86
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	96.85
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	96.85
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	96.85
4ido_A	457	Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HE	96.85
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	96.84
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	96.84
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	96.84
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	96.83
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	96.8
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	96.8
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	96.8
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	96.79
1via_A	175	Shikimate kinase; structural genomics, transferase	96.79
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	96.78
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	96.78
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	96.76
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	96.76
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	96.76
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	96.75
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	96.75
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	96.73
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	96.73
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	96.71
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	96.71
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	96.71
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	96.71
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	96.71
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	96.71
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	96.7
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	96.69
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	96.68
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	96.68
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	96.68
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	96.68
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	96.67
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	96.66
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	96.66
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	96.66
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	96.66
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	96.65
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	96.64
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	96.64
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	96.64
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	96.64
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	96.63
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	96.63
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	96.63
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	96.62
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	96.62
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	96.61
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	96.61
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	96.59
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	96.59
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	96.59
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	96.57
2ewv_A	372	Twitching motility protein PILT; pilus retraction	96.57
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	96.57
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	96.56
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	96.54
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	96.54
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	96.54
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	96.53
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	96.53
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	96.53
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	96.5
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	96.49
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	96.49
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	96.48
1p9r_A	418	General secretion pathway protein E; bacterial typ	96.47
2vli_A	183	Antibiotic resistance protein; transferase, tunica	96.46
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	96.44
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	96.43
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	96.42
3co5_A	143	Putative two-component system transcriptional RES	96.41
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	96.4
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	96.39
2og2_A	359	Putative signal recognition particle receptor; nuc	96.38
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	96.37
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	96.37
2cvh_A	220	DNA repair and recombination protein RADB; filamen	96.36
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	96.36
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	96.35
3bos_A	242	Putative DNA replication factor; P-loop containing	96.35
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	96.34
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	96.34
1tue_A	212	Replication protein E1; helicase, replication, E1E	96.34
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	96.34
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	96.33
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	96.32
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	96.31
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	96.3
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	96.29
3kta_A	182	Chromosome segregation protein SMC; structural mai	96.27
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	96.25
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	96.24
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	96.22
3uc9_A	233	Increased recombination centers protein 6; rossman	96.21
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	96.18
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	96.17
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	96.14
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	96.12
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	96.08
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	96.08
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	96.07
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	96.06
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	96.06
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	96.06
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	96.06
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	96.06
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	96.05
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	96.04
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	96.04
2chg_A	226	Replication factor C small subunit; DNA-binding pr	96.04
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	96.01
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	95.98
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	95.96
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	95.95
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	95.93
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	95.92
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	95.91
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	95.87
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	95.86
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	95.86
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	95.85
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	95.81
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	95.8
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	95.8
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	95.78
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	95.78
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	95.75
1c9k_A	180	COBU, adenosylcobinamide kinase; alpha/beta struct	95.75
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	95.73
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	95.72
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	95.72
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	95.7
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	95.69
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	95.68
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	95.68
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	95.67
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	95.67
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	95.67
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	95.66
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	95.66
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	95.65
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	95.65
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	95.63
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	95.61
2qgz_A	308	Helicase loader, putative primosome component; str	95.6
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	95.6
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	95.58
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	95.57
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	95.56
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	95.52
3te6_A	318	Regulatory protein SIR3; heterochromatin, gene sil	95.51
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	95.48
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	95.47
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	95.47
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	95.47
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	95.45
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	95.45
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	95.44
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	95.42
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	95.42
2axn_A	520	6-phosphofructo-2-kinase/fructose-2,6- biphosphata	95.41
1qhl_A	227	Protein (cell division protein MUKB); SMC, chromos	95.41
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	95.38
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	95.36
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	95.34
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	95.32
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	95.31
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	95.31
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	95.3
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	95.3
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	95.3
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	95.27
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	95.27

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=100.00  E-value=1.9e-44  Score=263.61  Aligned_cols=207  Identities=36%  Similarity=0.585  Sum_probs=142.4

Q ss_pred             CCCCCCCCCCCceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccch
Q 028300            1 MGSSSGQSNSYDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLT   79 (211)
Q Consensus         1 ~~~~~~~~~~~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~   79 (211)
                      |+++..... -.+++||+|+|.+|||||||+++|..+.| ..+.+|.+.++....+...+..+.+.||||+|+++|..++
T Consensus         1 ms~~~~~~~-P~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~   79 (216)
T 4dkx_A            1 MSTGGDFGN-PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLI   79 (216)
T ss_dssp             -------------CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGH
T ss_pred             CCCCCCCCC-CCCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHH
Confidence            444443322 23679999999999999999999999998 6778999999988888889999999999999999999999


Q ss_pred             hhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeec
Q 028300           80 SSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSA  159 (211)
Q Consensus        80 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa  159 (211)
                      ..+++.+|++++|||++++++|+++.. |...+... ...++|++||+||+|+.+.+.+..+++..++..++++|++|||
T Consensus        80 ~~~~~~a~~~ilv~di~~~~Sf~~i~~-~~~~i~~~-~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~SA  157 (216)
T 4dkx_A           80 PSYIRDSAAAVVVYDITNVNSFQQTTK-WIDDVRTE-RGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSA  157 (216)
T ss_dssp             HHHHTTCSEEEEEEETTCHHHHHTHHH-HHHHHHHH-HTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEEBT
T ss_pred             HHHhccccEEEEEeecchhHHHHHHHH-HHHHHHHh-cCCCCeEEEEeeccchHhcCcccHHHHhhHHHHhCCeeEEEeC
Confidence            999999999999999999999999998 77776654 4568999999999999888899999999999999999999999


Q ss_pred             cCCCcHHHHHHHHHHHHHhccchhcccccccccccccCCCCCCCCCCCCCCC
Q 028300          160 KTRENVEQCFEQLALKIMEVPSLLEEGSNVVKRNILKQKPENQSPPIGGCCS  211 (211)
Q Consensus       160 ~~~~gv~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (211)
                      ++|.||+++|++|++.+........... .....+....+++++..+++|||
T Consensus       158 ktg~nV~e~F~~i~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~C~C  208 (216)
T 4dkx_A          158 KAGYNVKQLFRRVAAALPGMESTQDRSR-EDMIDIKLEKPQEQPVSEGGCSC  208 (216)
T ss_dssp             TTTBSHHHHHHHHHHHC-----------------------------------
T ss_pred             CCCcCHHHHHHHHHHHHHhhhccccccc-ccccccccCCCCCCCCCCCCCce
Confidence            9999999999999998876554333222 11222333455566667788887

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=100.00  E-value=2.7e-37  Score=224.83  Aligned_cols=172  Identities=51%  Similarity=0.806  Sum_probs=153.7

Q ss_pred             CCceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcE
Q 028300           10 SYDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQG   88 (211)
Q Consensus        10 ~~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~   88 (211)
                      ..+..++|+|+|++|+|||||+++|.+..+ ..+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|+
T Consensus         4 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   83 (206)
T 2bcg_Y            4 EYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHG   83 (206)
T ss_dssp             CCSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSE
T ss_pred             ccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCE
Confidence            357789999999999999999999999988 5677888888888888888889999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHH
Q 028300           89 IILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQC  168 (211)
Q Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l  168 (211)
                      +|+|||++++.++..+.. |+..+... ...++|+++|+||+|+.+.+.+..++...++...+++++++||+++.|++++
T Consensus        84 vilv~d~~~~~s~~~~~~-~~~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l  161 (206)
T 2bcg_Y           84 IIIVYDVTDQESFNGVKM-WLQEIDRY-ATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDA  161 (206)
T ss_dssp             EEEEEETTCHHHHHHHHH-HHHHHHHH-SCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHH
T ss_pred             EEEEEECcCHHHHHHHHH-HHHHHHHh-cCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHH
Confidence            999999999999999988 87777655 3468999999999999887778888888888889999999999999999999


Q ss_pred             HHHHHHHHHhccchh
Q 028300          169 FEQLALKIMEVPSLL  183 (211)
Q Consensus       169 ~~~i~~~~~~~~~~~  183 (211)
                      |++|.+.+.+.....
T Consensus       162 ~~~l~~~i~~~~~~~  176 (206)
T 2bcg_Y          162 FLTMARQIKESMSQQ  176 (206)
T ss_dssp             HHHHHHHHHHHCCHH
T ss_pred             HHHHHHHHHHHHhhc
Confidence            999999988765443

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=100.00  E-value=7.3e-37  Score=222.37  Aligned_cols=180  Identities=29%  Similarity=0.498  Sum_probs=148.5

Q ss_pred             CCCCCCCCCCCceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccch
Q 028300            1 MGSSSGQSNSYDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLT   79 (211)
Q Consensus         1 ~~~~~~~~~~~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~   79 (211)
                      |.++.+........++|+|+|++|||||||+++|.+..+ ..+.++.+..+ ...+.+++..+.+.+||+||+..+...+
T Consensus         1 m~~~~~~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~   79 (206)
T 2bov_A            1 MAANKPKGQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIR   79 (206)
T ss_dssp             ----------CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHH
T ss_pred             CCcccccCCCCCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEcCCChhhhHHHH
Confidence            667777777778899999999999999999999999887 55566666554 3556778888999999999999999889


Q ss_pred             hhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeec
Q 028300           80 SSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSA  159 (211)
Q Consensus        80 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa  159 (211)
                      ..+++.+|++++|||+++.+++..+.. |...+.......++|+++|+||+|+.+.+.+..++...++..++++++++||
T Consensus        80 ~~~~~~~~~~i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa  158 (206)
T 2bov_A           80 DNYFRSGEGFLCVFSITEMESFAATAD-FREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSA  158 (206)
T ss_dssp             HHHHHHCSEEEEEEETTCHHHHHHHHH-HHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECT
T ss_pred             HHHHhhCCEEEEEEECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHHHhCCeEEEEeC
Confidence            999999999999999999999999987 7777766545568999999999999877778888888899889999999999


Q ss_pred             cCCCcHHHHHHHHHHHHHhccch
Q 028300          160 KTRENVEQCFEQLALKIMEVPSL  182 (211)
Q Consensus       160 ~~~~gv~~l~~~i~~~~~~~~~~  182 (211)
                      +++.|++++|++|.+.+.+.+..
T Consensus       159 ~~g~gi~~l~~~l~~~i~~~~~~  181 (206)
T 2bov_A          159 KTRANVDKVFFDLMREIRARKME  181 (206)
T ss_dssp             TTCTTHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHcccc
Confidence            99999999999999998876543

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.5e-36  Score=221.65  Aligned_cols=180  Identities=44%  Similarity=0.708  Sum_probs=143.6

Q ss_pred             CCCCCCCCCCCceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccch
Q 028300            1 MGSSSGQSNSYDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLT   79 (211)
Q Consensus         1 ~~~~~~~~~~~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~   79 (211)
                      |++... ....+..++|+|+|++|+|||||+++|.+..+ ..+.++.+.++....+.+.+..+.+.+||+||++.+..++
T Consensus         1 Ms~~~~-~~~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~   79 (223)
T 3cpj_B            1 MSSEDY-GYDYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAIT   79 (223)
T ss_dssp             ----------CCEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCC
T ss_pred             CCcccc-CCCCCeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhH
Confidence            444433 33457889999999999999999999999988 5666788888888888888888999999999999999999


Q ss_pred             hhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeec
Q 028300           80 SSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSA  159 (211)
Q Consensus        80 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa  159 (211)
                      ..+++.+|++|+|||++++.+++.+.. |+..+... ...++|++||+||+|+.+.+.+..++...++...+++++++||
T Consensus        80 ~~~~~~~d~vilV~D~~~~~s~~~~~~-~l~~i~~~-~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa  157 (223)
T 3cpj_B           80 SAYYRGAVGALIVYDISKSSSYENCNH-WLSELREN-ADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSA  157 (223)
T ss_dssp             GGGTTTCCEEEEEEC-CCHHHHHHHHH-HHHHHHHH-CC--CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTCEEEECCC
T ss_pred             HHHhccCCEEEEEEeCCCHHHHHHHHH-HHHHHHHh-CCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeC
Confidence            999999999999999999999999887 87777655 3468999999999999777778888888888889999999999


Q ss_pred             cCCCcHHHHHHHHHHHHHhccchh
Q 028300          160 KTRENVEQCFEQLALKIMEVPSLL  183 (211)
Q Consensus       160 ~~~~gv~~l~~~i~~~~~~~~~~~  183 (211)
                      +++.|++++|++|.+.+.+.....
T Consensus       158 ~~~~gi~~l~~~l~~~i~~~~~~~  181 (223)
T 3cpj_B          158 LNSENVDKAFEELINTIYQKVSKH  181 (223)
T ss_dssp             C-CCCHHHHHHHHHHHHTTCC---
T ss_pred             CCCCCHHHHHHHHHHHHHHHhhhc
Confidence            999999999999999988765443

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=100.00  E-value=2.8e-36  Score=219.49  Aligned_cols=198  Identities=32%  Similarity=0.561  Sum_probs=147.2

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEE
Q 028300           11 YDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGI   89 (211)
Q Consensus        11 ~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~   89 (211)
                      ....++|+|+|++|+|||||+++|.+..+ ..+.++.+.++....+.+++..+.+.+||+||+..+...+..+++.+|++
T Consensus         5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   84 (207)
T 1vg8_A            5 KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCC   84 (207)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEE
T ss_pred             cCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEE
Confidence            45789999999999999999999999887 56777888888888888888889999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHhhhhcc---CCCccEEEEeecCCCCCCcccCHHHHHHHHH-HcCCeEEEeeccCCCcH
Q 028300           90 ILVYDVTRRETFTNLSDVWAKEVDLYST---NQDCVKMLVGNKVDRDSERVVSREEGIALAK-EHGSLFLECSAKTRENV  165 (211)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~-~~~~~~~~~Sa~~~~gv  165 (211)
                      |+|||++++.++..+.. |...+.....   ..++|+++|+||+|+. .+.+..++...++. ..+++++++||+++.|+
T Consensus        85 i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi  162 (207)
T 1vg8_A           85 VLVFDVTAPNTFKTLDS-WRDEFLIQASPRDPENFPFVVLGNKIDLE-NRQVATKRAQAWCYSKNNIPYFETSAKEAINV  162 (207)
T ss_dssp             EEEEETTCHHHHHTHHH-HHHHHHHHHCCSSGGGSCEEEEEECTTSS-CCCSCHHHHHHHHHHTTSCCEEECBTTTTBSH
T ss_pred             EEEEECCCHHHHHHHHH-HHHHHHHhcccccCCCCcEEEEEECCCCc-ccccCHHHHHHHHHhcCCceEEEEeCCCCCCH
Confidence            99999999999998877 7666654422   2578999999999997 44566677777776 56789999999999999


Q ss_pred             HHHHHHHHHHHHhccchhcccccccccccccCCCCCCCCCCCCCCC
Q 028300          166 EQCFEQLALKIMEVPSLLEEGSNVVKRNILKQKPENQSPPIGGCCS  211 (211)
Q Consensus       166 ~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (211)
                      +++|++|.+.+.+.....+..+. ....+.....++..+.++||||
T Consensus       163 ~~l~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~c~c  207 (207)
T 1vg8_A          163 EQAFQTIARNALKQETEVELYNE-FPEPIKLDKNERAKASAESCSC  207 (207)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH-SCCCC-----------------
T ss_pred             HHHHHHHHHHHHHhccccccccC-CCccccCCcccccccCCCCCCC
Confidence            99999999999876643322111 1112222222333477888987

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=100.00  E-value=2e-34  Score=207.88  Aligned_cols=174  Identities=51%  Similarity=0.817  Sum_probs=154.6

Q ss_pred             CCCCceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCC
Q 028300            8 SNSYDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGA   86 (211)
Q Consensus         8 ~~~~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~   86 (211)
                      +...+..+||+|+|++|+|||||+++|.+..+ ..+.++.+.++....+.+.+..+.+.+||+||++.+...+..+++.+
T Consensus        10 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~   89 (196)
T 3tkl_A           10 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGA   89 (196)
T ss_dssp             -CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTC
T ss_pred             CcccccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhC
Confidence            34557889999999999999999999999887 66778888888888888899999999999999999999999999999


Q ss_pred             cEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHH
Q 028300           87 QGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVE  166 (211)
Q Consensus        87 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~  166 (211)
                      |++++|||++++.+++.+.. |...+... ...++|+++|+||+|+.+.+.+...+...++..++++++++||+++.|++
T Consensus        90 d~~i~v~d~~~~~s~~~~~~-~~~~i~~~-~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~  167 (196)
T 3tkl_A           90 HGIIVVYDVTDQESFNNVKQ-WLQEIDRY-ASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVE  167 (196)
T ss_dssp             SEEEEEEETTCHHHHHTHHH-HHHHHHHH-SCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEEECTTTCTTHH
T ss_pred             CEEEEEEECcCHHHHHHHHH-HHHHHHHh-cCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHH
Confidence            99999999999999999988 87777665 35689999999999998888888888899999999999999999999999


Q ss_pred             HHHHHHHHHHHhccchh
Q 028300          167 QCFEQLALKIMEVPSLL  183 (211)
Q Consensus       167 ~l~~~i~~~~~~~~~~~  183 (211)
                      ++|++|.+.+.+.....
T Consensus       168 ~l~~~l~~~i~~~~~~~  184 (196)
T 3tkl_A          168 QSFMTMAAEIKKRMGPG  184 (196)
T ss_dssp             HHHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHHHHhccc
Confidence            99999999998775543

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=100.00  E-value=9.5e-35  Score=209.05  Aligned_cols=171  Identities=49%  Similarity=0.785  Sum_probs=148.5

Q ss_pred             CCCCCceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccC
Q 028300            7 QSNSYDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRG   85 (211)
Q Consensus         7 ~~~~~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~   85 (211)
                      +.......+||+|+|++|+|||||+++|.+..+ ..+.++.+.++....+.+++..+.+.+||+||++.+...+..++++
T Consensus        14 ~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~   93 (191)
T 2a5j_A           14 LVPRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRG   93 (191)
T ss_dssp             CCCTTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTT
T ss_pred             cccccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhcc
Confidence            345568899999999999999999999999888 4566777888887888888889999999999999999999999999


Q ss_pred             CcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcH
Q 028300           86 AQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENV  165 (211)
Q Consensus        86 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv  165 (211)
                      +|++++|||++++++++.+.. |+..+... ...++|+++|+||+|+.+.+.+..++...++...+++++++||+++.|+
T Consensus        94 ~d~ii~v~d~~~~~s~~~~~~-~l~~i~~~-~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi  171 (191)
T 2a5j_A           94 AAGALLVYDITRRETFNHLTS-WLEDARQH-SSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNV  171 (191)
T ss_dssp             CSEEEEEEETTCHHHHHTHHH-HHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTH
T ss_pred             CCEEEEEEECCCHHHHHHHHH-HHHHHHHh-cCCCCCEEEEEECcccCCccccCHHHHHHHHHHcCCEEEEEeCCCCCCH
Confidence            999999999999999999888 77777654 3468999999999999777778888888999999999999999999999


Q ss_pred             HHHHHHHHHHHHhc
Q 028300          166 EQCFEQLALKIMEV  179 (211)
Q Consensus       166 ~~l~~~i~~~~~~~  179 (211)
                      +++|++|.+.+.+.
T Consensus       172 ~~l~~~l~~~i~~~  185 (191)
T 2a5j_A          172 EEAFINTAKEIYRK  185 (191)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999988764

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=100.00  E-value=1.8e-34  Score=209.40  Aligned_cols=170  Identities=47%  Similarity=0.786  Sum_probs=152.2

Q ss_pred             CCCceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCc
Q 028300            9 NSYDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQ   87 (211)
Q Consensus         9 ~~~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d   87 (211)
                      ...+..+||+|+|++|+|||||+++|.+..+ ..+.++.+.++....+...+..+.+.+||+||++.+...+..+++.+|
T Consensus         3 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   82 (203)
T 1zbd_A            3 HMFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAM   82 (203)
T ss_dssp             CSCSEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCS
T ss_pred             cccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCC
Confidence            3467889999999999999999999999888 566788888888888888888999999999999999999999999999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHH
Q 028300           88 GIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQ  167 (211)
Q Consensus        88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~  167 (211)
                      ++|+|||++++.+++.+.. |...+... ...++|+++|+||+|+.+.+.+..++...++..++++++++||+++.|+++
T Consensus        83 ~ii~v~d~~~~~s~~~~~~-~~~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  160 (203)
T 1zbd_A           83 GFILMYDITNEESFNAVQD-WSTQIKTY-SWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQ  160 (203)
T ss_dssp             EEEEEEETTCHHHHHHHHH-HHHHHHHH-SCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTCEEEECBTTTTBSSHH
T ss_pred             EEEEEEECcCHHHHHHHHH-HHHHHHHh-cCCCCCEEEEEECcccCcccccCHHHHHHHHHHCCCeEEEEECCCCCCHHH
Confidence            9999999999999999887 77777655 346899999999999988777888888889999999999999999999999


Q ss_pred             HHHHHHHHHHhcc
Q 028300          168 CFEQLALKIMEVP  180 (211)
Q Consensus       168 l~~~i~~~~~~~~  180 (211)
                      +|++|.+.+.+..
T Consensus       161 l~~~l~~~i~~~~  173 (203)
T 1zbd_A          161 TFERLVDVICEKM  173 (203)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999887654

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=100.00  E-value=2.6e-34  Score=204.24  Aligned_cols=168  Identities=50%  Similarity=0.829  Sum_probs=149.1

Q ss_pred             CCCceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCc
Q 028300            9 NSYDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQ   87 (211)
Q Consensus         9 ~~~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d   87 (211)
                      ...+..++|+|+|.+|+|||||+++|.+..+ ..+.++.+.++....+.+.+..+.+.+||+||++.+...+..+++.+|
T Consensus        10 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   89 (179)
T 1z0f_A           10 YNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAA   89 (179)
T ss_dssp             -CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCS
T ss_pred             cccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCC
Confidence            4467889999999999999999999999887 566778888888888888888999999999999999999999999999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHH
Q 028300           88 GIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQ  167 (211)
Q Consensus        88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~  167 (211)
                      ++++|||+++..+++.+.. |...+... ...++|+++|+||+|+.+.+.+..++..+++..++++++++||+++.|+++
T Consensus        90 ~~i~v~d~~~~~s~~~~~~-~~~~~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  167 (179)
T 1z0f_A           90 GALMVYDITRRSTYNHLSS-WLTDARNL-TNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVED  167 (179)
T ss_dssp             EEEEEEETTCHHHHHTHHH-HHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHH
T ss_pred             EEEEEEeCcCHHHHHHHHH-HHHHHHHh-cCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence            9999999999999998887 77777655 346899999999999977777788888899999999999999999999999


Q ss_pred             HHHHHHHHHHh
Q 028300          168 CFEQLALKIME  178 (211)
Q Consensus       168 l~~~i~~~~~~  178 (211)
                      +|++|.+.+.+
T Consensus       168 l~~~l~~~i~~  178 (179)
T 1z0f_A          168 AFLEAAKKIYQ  178 (179)
T ss_dssp             HHHHHHHHHC-
T ss_pred             HHHHHHHHHhh
Confidence            99999988754

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=100.00  E-value=6.1e-35  Score=213.30  Aligned_cols=195  Identities=28%  Similarity=0.507  Sum_probs=141.4

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEE
Q 028300           11 YDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGI   89 (211)
Q Consensus        11 ~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~   89 (211)
                      ....++|+++|++|+|||||+++|.++.+ ..+.++.+..+ ...+.+++..+.+.+||+||++.+..++..+++++|++
T Consensus         6 ~~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~   84 (212)
T 2j0v_A            6 VSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIF   84 (212)
T ss_dssp             CCCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCE-EEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEE
T ss_pred             cCceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeE-EEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEE
Confidence            35689999999999999999999999887 55667776555 34556677889999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcc--------cCHHHHHHHHHHcCC-eEEEeecc
Q 028300           90 ILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERV--------VSREEGIALAKEHGS-LFLECSAK  160 (211)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~--------v~~~~~~~~~~~~~~-~~~~~Sa~  160 (211)
                      |+|||++++++++.+...|...+..+  ..++|+++|+||+|+.+.+.        +..++...++..+++ +|+++||+
T Consensus        85 ilv~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~  162 (212)
T 2j0v_A           85 VLAFSLISKASYENVLKKWMPELRRF--APNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSK  162 (212)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHH--CTTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEECCTT
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEEEccCC
Confidence            99999999999999985588888765  34899999999999866543        367778888888886 89999999


Q ss_pred             CCCcHHHHHHHHHHHHHhccchhcccccccccccccCCCCCCCCCCCCCC
Q 028300          161 TRENVEQCFEQLALKIMEVPSLLEEGSNVVKRNILKQKPENQSPPIGGCC  210 (211)
Q Consensus       161 ~~~gv~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (211)
                      ++.|++++|++|.+.+.+.....+......+++.  ..-.-...-.+|||
T Consensus       163 ~g~gi~~l~~~l~~~~~~~~~~~~~~~~~~~~~~--~~c~~~~~~~~~~~  210 (212)
T 2j0v_A          163 TQQNVKAVFDTAIKVVLQPPRRKEVPRRRKNHRR--SGCSIASIVCGGCT  210 (212)
T ss_dssp             TCTTHHHHHHHHHHHHHCC-------------------------------
T ss_pred             CCCCHHHHHHHHHHHHhhhhhhcccccccccccC--CCcEEehHhhcccc
Confidence            9999999999999999877654443322222221  11112266678888

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=2.4e-34  Score=208.54  Aligned_cols=170  Identities=43%  Similarity=0.779  Sum_probs=151.2

Q ss_pred             CCCceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCc
Q 028300            9 NSYDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQ   87 (211)
Q Consensus         9 ~~~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d   87 (211)
                      ...+..+||+++|++|+|||||+++|.+..+ ..+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|
T Consensus        21 ~~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d  100 (201)
T 2ew1_A           21 EDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSAN  100 (201)
T ss_dssp             -CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCS
T ss_pred             cccccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCC
Confidence            4567889999999999999999999999888 567788888888888888888999999999999999998999999999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHH
Q 028300           88 GIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQ  167 (211)
Q Consensus        88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~  167 (211)
                      ++|+|||++++.+++.+.. |...+... ...++|+++|+||+|+.+.+.+..++...++...+++++++||+++.|+++
T Consensus       101 ~~i~v~D~~~~~s~~~~~~-~~~~i~~~-~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~  178 (201)
T 2ew1_A          101 ALILTYDITCEESFRCLPE-WLREIEQY-ASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEK  178 (201)
T ss_dssp             EEEEEEETTCHHHHHTHHH-HHHHHHHH-SCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHH
T ss_pred             EEEEEEECCCHHHHHHHHH-HHHHHHHh-cCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence            9999999999999998887 87777655 346899999999999977777888888888888899999999999999999


Q ss_pred             HHHHHHHHHHhcc
Q 028300          168 CFEQLALKIMEVP  180 (211)
Q Consensus       168 l~~~i~~~~~~~~  180 (211)
                      +|++|.+.+.+..
T Consensus       179 l~~~l~~~i~~~~  191 (201)
T 2ew1_A          179 LFLDLACRLISEA  191 (201)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999887643

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=100.00  E-value=2.5e-34  Score=203.68  Aligned_cols=168  Identities=30%  Similarity=0.400  Sum_probs=136.2

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhh--hccchhhhccCCcEE
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER--FRTLTSSYYRGAQGI   89 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~--~~~~~~~~~~~~d~~   89 (211)
                      ...+||+++|++|+|||||+++|.+..+....++.+.++....+.+++..+.+.+||+||+..  +..+...+++.+|++
T Consensus         2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~   81 (175)
T 2nzj_A            2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAY   81 (175)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSEE
T ss_pred             ceEEEEEEECCCCccHHHHHHHHhcCCCccccCccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCEE
Confidence            357999999999999999999999988866667788888777888888899999999999887  556667888999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHH
Q 028300           90 ILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCF  169 (211)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~  169 (211)
                      ++|||++++.+++.+.. |...+.......++|+++|+||+|+.+.+.+..++...++..++++++++||++|.|++++|
T Consensus        82 i~v~d~~~~~s~~~~~~-~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~  160 (175)
T 2nzj_A           82 VIVYSIADRGSFESASE-LRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELF  160 (175)
T ss_dssp             EEEEETTCHHHHHHHHH-HHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHH
T ss_pred             EEEEECCCHHHHHHHHH-HHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHH
Confidence            99999999999999987 76666554345689999999999998777788888888888889999999999999999999


Q ss_pred             HHHHHHHHhcc
Q 028300          170 EQLALKIMEVP  180 (211)
Q Consensus       170 ~~i~~~~~~~~  180 (211)
                      ++|.+.+...+
T Consensus       161 ~~l~~~~~~~~  171 (175)
T 2nzj_A          161 EGVVRQLRLRR  171 (175)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhh
Confidence            99999886543

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=100.00  E-value=5.6e-34  Score=203.50  Aligned_cols=168  Identities=31%  Similarity=0.516  Sum_probs=148.6

Q ss_pred             CCCceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCc
Q 028300            9 NSYDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQ   87 (211)
Q Consensus         9 ~~~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d   87 (211)
                      ......+||+|+|++|+|||||+++|.+..+ ..+.++.+..+ ......++..+.+.+||+||++.+...+..+++++|
T Consensus        13 ~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d   91 (183)
T 3kkq_A           13 SENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGD   91 (183)
T ss_dssp             -CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCS
T ss_pred             ccCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee-EEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCC
Confidence            4456789999999999999999999999887 56666666666 666778888999999999999999999999999999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeecc-CCCcHH
Q 028300           88 GIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAK-TRENVE  166 (211)
Q Consensus        88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~-~~~gv~  166 (211)
                      ++++|||++++.+++.+.. |...+.......++|+++|+||+|+.+.+.+..++...++..++++|+++||+ ++.|++
T Consensus        92 ~~i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~v~  170 (183)
T 3kkq_A           92 GFLIVYSVTDKASFEHVDR-FHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVD  170 (183)
T ss_dssp             EEEEEEETTCHHHHHTHHH-HHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHH
T ss_pred             EEEEEEECCCHHHHHHHHH-HHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhCCeEEEeccCCCCCCHH
Confidence            9999999999999999988 77766555456789999999999998888889999999999999999999999 999999


Q ss_pred             HHHHHHHHHHHh
Q 028300          167 QCFEQLALKIME  178 (211)
Q Consensus       167 ~l~~~i~~~~~~  178 (211)
                      ++|++|.+.+.+
T Consensus       171 ~l~~~l~~~i~~  182 (183)
T 3kkq_A          171 KTFHDLVRVIRQ  182 (183)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhh
Confidence            999999998765

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=100.00  E-value=4.4e-34  Score=203.69  Aligned_cols=169  Identities=36%  Similarity=0.501  Sum_probs=147.5

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEE
Q 028300           11 YDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGI   89 (211)
Q Consensus        11 ~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~   89 (211)
                      ....++|+++|++|+|||||+++|.++.+ ..+.++.+..+ ...+..++..+.+.+||+||++.+...+..+++.+|++
T Consensus         3 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~   81 (181)
T 3t5g_A            3 QSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGY   81 (181)
T ss_dssp             CEEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEE
T ss_pred             CCceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEE
Confidence            35789999999999999999999998887 66777777776 66677888899999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHH
Q 028300           90 ILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCF  169 (211)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~  169 (211)
                      ++|||++++++++.+.. |...+.......++|+++|+||+|+.+.+.+..++...++..++++|+++||+++.|++++|
T Consensus        82 i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~  160 (181)
T 3t5g_A           82 ILVYSVTSIKSFEVIKV-IHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVF  160 (181)
T ss_dssp             EEEEETTCHHHHHHHHH-HHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCTTSHHHHHHHH
T ss_pred             EEEEECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHHhCCcEEEEecCCCCCHHHHH
Confidence            99999999999999988 77766555456689999999999998888889999999999999999999999999999999


Q ss_pred             HHHHHHHHhccc
Q 028300          170 EQLALKIMEVPS  181 (211)
Q Consensus       170 ~~i~~~~~~~~~  181 (211)
                      ++|.+.+.....
T Consensus       161 ~~l~~~~~~~~~  172 (181)
T 3t5g_A          161 RRIILEAEKMDG  172 (181)
T ss_dssp             HHHHHHHHTC--
T ss_pred             HHHHHHHHHhcC
Confidence            999999887754

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=8.5e-34  Score=204.40  Aligned_cols=175  Identities=56%  Similarity=0.948  Sum_probs=153.5

Q ss_pred             CCCceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCc
Q 028300            9 NSYDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQ   87 (211)
Q Consensus         9 ~~~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d   87 (211)
                      ......++|+|+|++|+|||||+++|.+..+ ..+.++.+.++....+.+.+..+.+.+||+||+..+...+..+++.+|
T Consensus        10 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d   89 (195)
T 1x3s_A           10 EDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQ   89 (195)
T ss_dssp             TTEEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCC
T ss_pred             cCCCCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCC
Confidence            3445689999999999999999999999987 567788888888888888999999999999999999999999999999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHH
Q 028300           88 GIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQ  167 (211)
Q Consensus        88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~  167 (211)
                      ++|+|||++++.++..+.. |+..+..+....++|+++|+||+|+. .+.+..++...++...+++++++||+++.|+++
T Consensus        90 ~ii~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~p~ilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  167 (195)
T 1x3s_A           90 GVILVYDVTRRDTFVKLDN-WLNELETYCTRNDIVNMLVGNKIDKE-NREVDRNEGLKFARKHSMLFIEASAKTCDGVQC  167 (195)
T ss_dssp             EEEEEEETTCHHHHHTHHH-HHHHHTTCCSCSCCEEEEEEECTTSS-SCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHH
T ss_pred             EEEEEEECcCHHHHHHHHH-HHHHHHHhcCcCCCcEEEEEECCcCc-ccccCHHHHHHHHHHcCCEEEEecCCCCCCHHH
Confidence            9999999999999999887 87777665445689999999999994 455677788888888999999999999999999


Q ss_pred             HHHHHHHHHHhccchhcc
Q 028300          168 CFEQLALKIMEVPSLLEE  185 (211)
Q Consensus       168 l~~~i~~~~~~~~~~~~~  185 (211)
                      +|++|.+.+.+....++.
T Consensus       168 l~~~l~~~~~~~~~~~~~  185 (195)
T 1x3s_A          168 AFEELVEKIIQTPGLWES  185 (195)
T ss_dssp             HHHHHHHHHHTSGGGTCC
T ss_pred             HHHHHHHHHHhhhhhhcc
Confidence            999999999877655443

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=100.00  E-value=9.2e-35  Score=207.57  Aligned_cols=170  Identities=49%  Similarity=0.829  Sum_probs=123.1

Q ss_pred             CCceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcE
Q 028300           10 SYDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQG   88 (211)
Q Consensus        10 ~~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~   88 (211)
                      ..+..++|+++|++|+|||||+++|.+..+ ..+.++.+.++....+.+++..+.+.+||+||++.+...+..+++++|+
T Consensus         4 ~~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   83 (183)
T 2fu5_C            4 TYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG   83 (183)
T ss_dssp             CCSEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSE
T ss_pred             ccCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCE
Confidence            356789999999999999999999998877 4556777777777777888888999999999999999989999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHH
Q 028300           89 IILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQC  168 (211)
Q Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l  168 (211)
                      +++|||++++.+++.+.. |+..+... ...++|+++|+||+|+.+.+.+..++...++..++++++++||+++.|++++
T Consensus        84 ~i~v~d~~~~~s~~~~~~-~~~~i~~~-~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l  161 (183)
T 2fu5_C           84 IMLVYDITNEKSFDNIRN-WIRNIEEH-ASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENA  161 (183)
T ss_dssp             EEEEEETTCHHHHHHHHH-HHHHHHHH-SCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCHHHH
T ss_pred             EEEEEECcCHHHHHHHHH-HHHHHHHh-cCCCCCEEEEEECccCCccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHH
Confidence            999999999999999987 77777654 3468999999999999877778888888999999999999999999999999


Q ss_pred             HHHHHHHHHhccc
Q 028300          169 FEQLALKIMEVPS  181 (211)
Q Consensus       169 ~~~i~~~~~~~~~  181 (211)
                      |++|.+.+.+...
T Consensus       162 ~~~l~~~i~~~~~  174 (183)
T 2fu5_C          162 FFTLARDIKAKMD  174 (183)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhh
Confidence            9999998876543

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=100.00  E-value=6.7e-34  Score=204.26  Aligned_cols=171  Identities=46%  Similarity=0.780  Sum_probs=152.0

Q ss_pred             CCCCCceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccC
Q 028300            7 QSNSYDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRG   85 (211)
Q Consensus         7 ~~~~~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~   85 (211)
                      .....+..+||+|+|++|+|||||+++|.+..+ ..+.++.+.++....+...+..+.+.+||+||++.+...+..+++.
T Consensus        15 ~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~   94 (189)
T 2gf9_A           15 VPRGSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRG   94 (189)
T ss_dssp             CCTTCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTT
T ss_pred             CCcccCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccC
Confidence            345567889999999999999999999999988 5667888888887888888889999999999999999999999999


Q ss_pred             CcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcH
Q 028300           86 AQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENV  165 (211)
Q Consensus        86 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv  165 (211)
                      +|++++|||++++.+++.+.. |...+... ...++|+++|+||+|+.+.+.+..++...++..++++++++||+++.|+
T Consensus        95 ~d~ii~v~d~~~~~s~~~~~~-~~~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi  172 (189)
T 2gf9_A           95 AMGFLLMYDIANQESFAAVQD-WATQIKTY-SWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINV  172 (189)
T ss_dssp             CSEEEEEEETTCHHHHHTHHH-HHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSH
T ss_pred             CCEEEEEEECCCHHHHHHHHH-HHHHHHHh-cCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEECCCCCCH
Confidence            999999999999999999887 77777655 3468999999999999877777788888899999999999999999999


Q ss_pred             HHHHHHHHHHHHhc
Q 028300          166 EQCFEQLALKIMEV  179 (211)
Q Consensus       166 ~~l~~~i~~~~~~~  179 (211)
                      +++|++|.+.+.+.
T Consensus       173 ~~l~~~l~~~i~~~  186 (189)
T 2gf9_A          173 KQVFERLVDVICEK  186 (189)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999988654

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=100.00  E-value=2.9e-34  Score=208.22  Aligned_cols=171  Identities=43%  Similarity=0.745  Sum_probs=143.7

Q ss_pred             CCCCceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCC
Q 028300            8 SNSYDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGA   86 (211)
Q Consensus         8 ~~~~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~   86 (211)
                      ....+..+||+|+|++|+|||||+++|.+..+ ..+.++.+.++....+.+++..+.+.+||+||++++...+..+++.+
T Consensus        23 ~~~~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~  102 (201)
T 2hup_A           23 DEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSA  102 (201)
T ss_dssp             ---CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTC
T ss_pred             ccccccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhC
Confidence            35567789999999999999999999999888 56677777778777888888889999999999999999999999999


Q ss_pred             cEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCC-eEEEeeccCCCcH
Q 028300           87 QGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGS-LFLECSAKTRENV  165 (211)
Q Consensus        87 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~gv  165 (211)
                      |++|+|||++++++++.+.. |+..+... ...++|+++|+||+|+.+.+.+..++...++...++ +++++||+++.|+
T Consensus       103 d~iilv~D~~~~~s~~~~~~-~~~~i~~~-~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi  180 (201)
T 2hup_A          103 NGAILAYDITKRSSFLSVPH-WIEDVRKY-AGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNV  180 (201)
T ss_dssp             SEEEEEEETTBHHHHHTHHH-HHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEEECBTTTTBSH
T ss_pred             CEEEEEEECCCHHHHHHHHH-HHHHHHHh-cCCCCCEEEEEECCccccccccCHHHHHHHHHHcCCCEEEEEeCCCCCCH
Confidence            99999999999999999887 77777655 346899999999999987777888888899999999 9999999999999


Q ss_pred             HHHHHHHHHHHHhcc
Q 028300          166 EQCFEQLALKIMEVP  180 (211)
Q Consensus       166 ~~l~~~i~~~~~~~~  180 (211)
                      +++|++|.+.+.+..
T Consensus       181 ~~l~~~l~~~i~~~~  195 (201)
T 2hup_A          181 EEAFLRVATELIMRH  195 (201)
T ss_dssp             HHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhc
Confidence            999999999887643

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=100.00  E-value=5.2e-34  Score=205.41  Aligned_cols=170  Identities=42%  Similarity=0.700  Sum_probs=150.5

Q ss_pred             CCCceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCc
Q 028300            9 NSYDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQ   87 (211)
Q Consensus         9 ~~~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d   87 (211)
                      ...+..+||+|+|++|+|||||+++|.+..+ ..+.++.+.++....+.+.+..+.+.+||+||+..+...+..+++.+|
T Consensus        20 ~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d   99 (193)
T 2oil_A           20 EDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAV   99 (193)
T ss_dssp             CCCSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCC
T ss_pred             cccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCC
Confidence            4457789999999999999999999999888 456677788888888888888999999999999999999999999999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHH
Q 028300           88 GIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQ  167 (211)
Q Consensus        88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~  167 (211)
                      ++|+|||++++.++..+.. |+..+... ...++|+++|+||+|+...+.+...+...++...+++++++||+++.|+++
T Consensus       100 ~vi~v~D~~~~~s~~~~~~-~l~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  177 (193)
T 2oil_A          100 GALLVFDLTKHQTYAVVER-WLKELYDH-AEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVEL  177 (193)
T ss_dssp             EEEEEEETTCHHHHHTHHH-HHHHHHTT-SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHH
T ss_pred             EEEEEEECCCHHHHHHHHH-HHHHHHHh-cCCCCeEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence            9999999999999998887 77766544 346899999999999977677788888888888999999999999999999


Q ss_pred             HHHHHHHHHHhcc
Q 028300          168 CFEQLALKIMEVP  180 (211)
Q Consensus       168 l~~~i~~~~~~~~  180 (211)
                      +|++|.+.+.+..
T Consensus       178 l~~~l~~~i~~~~  190 (193)
T 2oil_A          178 AFETVLKEIFAKV  190 (193)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999887643

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=100.00  E-value=2.9e-34  Score=201.73  Aligned_cols=164  Identities=29%  Similarity=0.380  Sum_probs=122.2

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEEEE
Q 028300           14 SFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVY   93 (211)
Q Consensus        14 ~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (211)
                      .+||+++|++|+|||||+++|.+..+....++.+.++. ..+.+.+..+.+.+||++|++.+...+..+++.+|++++||
T Consensus         2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (166)
T 3q72_A            2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYD-RSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVY   80 (166)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHCCC----------CEEE-EEEEETTEEEEEEEEECC---------------CCEEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHcCccccCCCCccccceE-EEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEEE
Confidence            58999999999999999999998777666677777663 56677889999999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHHHHHH
Q 028300           94 DVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLA  173 (211)
Q Consensus        94 d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~  173 (211)
                      |++++++++.+.. |...+.......++|+++|+||+|+.+.+.+..++...++...+++++++||++|.|++++|++|.
T Consensus        81 d~~~~~s~~~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  159 (166)
T 3q72_A           81 SVTDKGSFEKASE-LRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVV  159 (166)
T ss_dssp             ETTCHHHHHHHHH-HHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTCEEEECBGGGTBSHHHHHHHHH
T ss_pred             ECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHH
Confidence            9999999999988 666655443457899999999999988888888888999999999999999999999999999999


Q ss_pred             HHHHhc
Q 028300          174 LKIMEV  179 (211)
Q Consensus       174 ~~~~~~  179 (211)
                      +.+.+.
T Consensus       160 ~~~~~~  165 (166)
T 3q72_A          160 RQIRLR  165 (166)
T ss_dssp             HHHHHH
T ss_pred             HHHHhc
Confidence            988754

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=1.1e-33  Score=201.39  Aligned_cols=171  Identities=47%  Similarity=0.820  Sum_probs=142.3

Q ss_pred             CCCCceeeEEEEEcCCCCcHHHHHHHHhhCCCC--CCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccC
Q 028300            8 SNSYDLSFKILLIGDSGVGKSSLLVSFISSSVD--DLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRG   85 (211)
Q Consensus         8 ~~~~~~~~~I~v~G~~~~GKssli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~   85 (211)
                      +...+..++|+++|++|+|||||+++|.+..+.  .+.++.+.++....+..++..+.+.+||+||++.+...+..++++
T Consensus         4 ~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~   83 (180)
T 2g6b_A            4 VDFYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRD   83 (180)
T ss_dssp             -CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGG
T ss_pred             cccCCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccC
Confidence            445678999999999999999999999998873  566777888777777888888999999999999999999999999


Q ss_pred             CcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcH
Q 028300           86 AQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENV  165 (211)
Q Consensus        86 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv  165 (211)
                      +|++++|||++++.+++.+.. |+..+... ...++|+++|+||+|+.+.+.+..++...++..++++++++||+++.|+
T Consensus        84 ~d~ii~v~d~~~~~s~~~~~~-~~~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  161 (180)
T 2g6b_A           84 AHALLLLYDVTNKASFDNIQA-WLTEIHEY-AQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNV  161 (180)
T ss_dssp             CSEEEEEEETTCHHHHHTHHH-HHHHHHHH-SCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTH
T ss_pred             CCEEEEEEECCCHHHHHHHHH-HHHHHHHh-CCCCCcEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEeCCCCCCH
Confidence            999999999999999998887 77777655 3368999999999999887778888888888888999999999999999


Q ss_pred             HHHHHHHHHHHHhcc
Q 028300          166 EQCFEQLALKIMEVP  180 (211)
Q Consensus       166 ~~l~~~i~~~~~~~~  180 (211)
                      +++|++|.+.+.+..
T Consensus       162 ~~l~~~l~~~~~~~~  176 (180)
T 2g6b_A          162 DLAFTAIAKELKRRS  176 (180)
T ss_dssp             HHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999999999887654

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=100.00  E-value=6.5e-34  Score=202.52  Aligned_cols=170  Identities=46%  Similarity=0.793  Sum_probs=151.1

Q ss_pred             CCceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcE
Q 028300           10 SYDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQG   88 (211)
Q Consensus        10 ~~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~   88 (211)
                      ..+..+||+|+|++|+|||||+++|.+..+ ..+.++.+.++....+.+.+..+.+.+||+||++.+...+..+++.+|+
T Consensus         5 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   84 (181)
T 3tw8_B            5 DYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHG   84 (181)
T ss_dssp             -CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSE
T ss_pred             ccCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCE
Confidence            457889999999999999999999999887 5677888888888888888989999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHH
Q 028300           89 IILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQC  168 (211)
Q Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l  168 (211)
                      +++|||++++.++..+.. |...+...  ..++|+++|+||+|+.+.+.+...+...++...+++++++||+++.|++++
T Consensus        85 ~i~v~d~~~~~s~~~~~~-~~~~~~~~--~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  161 (181)
T 3tw8_B           85 VIVVYDVTSAESFVNVKR-WLHEINQN--CDDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEM  161 (181)
T ss_dssp             EEEEEETTCHHHHHHHHH-HHHHHHHH--CTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHH
T ss_pred             EEEEEECCCHHHHHHHHH-HHHHHHHh--CCCCCEEEEEECCCCchhcccCHHHHHHHHHHcCCeEEEEECCCCCCHHHH
Confidence            999999999999999887 77777654  458999999999999887778888888999999999999999999999999


Q ss_pred             HHHHHHHHHhccch
Q 028300          169 FEQLALKIMEVPSL  182 (211)
Q Consensus       169 ~~~i~~~~~~~~~~  182 (211)
                      |++|.+.+.+.+..
T Consensus       162 ~~~l~~~~~~~~~~  175 (181)
T 3tw8_B          162 FNCITELVLRAKKD  175 (181)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhh
Confidence            99999988876543

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=2.3e-34  Score=207.25  Aligned_cols=171  Identities=36%  Similarity=0.628  Sum_probs=148.8

Q ss_pred             CCCCCceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccC
Q 028300            7 QSNSYDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRG   85 (211)
Q Consensus         7 ~~~~~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~   85 (211)
                      +....+..+||+|+|++|+|||||+++|.+..+ ..+.++.+.++....+.+.+..+.+.+||+||++.+...+..+++.
T Consensus        16 ~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~   95 (192)
T 2fg5_A           16 PRGSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRG   95 (192)
T ss_dssp             -----CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTT
T ss_pred             cccccCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhcc
Confidence            445668899999999999999999999999987 5788889988888888888888999999999999999999999999


Q ss_pred             CcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcH
Q 028300           86 AQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENV  165 (211)
Q Consensus        86 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv  165 (211)
                      +|++++|||++++.+++.+.. |+..+... ...++|+++|+||+|+.+.+.+..++...++...+++++++||+++.|+
T Consensus        96 ~d~iilV~d~~~~~s~~~~~~-~~~~i~~~-~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi  173 (192)
T 2fg5_A           96 SAAAVIVYDITKQDSFYTLKK-WVKELKEH-GPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINI  173 (192)
T ss_dssp             CSEEEEEEETTCTHHHHHHHH-HHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCEEEECBTTTTBSH
T ss_pred             CCEEEEEEeCCCHHHHHHHHH-HHHHHHHh-CCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCH
Confidence            999999999999999999987 87777655 3468999999999999766777888888999889999999999999999


Q ss_pred             HHHHHHHHHHHHhc
Q 028300          166 EQCFEQLALKIMEV  179 (211)
Q Consensus       166 ~~l~~~i~~~~~~~  179 (211)
                      +++|++|.+.+.+.
T Consensus       174 ~~l~~~l~~~i~~~  187 (192)
T 2fg5_A          174 EELFQGISRQIPPL  187 (192)
T ss_dssp             HHHHHHHHHTCC--
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999999877544

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=100.00  E-value=1.1e-33  Score=201.56  Aligned_cols=170  Identities=38%  Similarity=0.643  Sum_probs=147.7

Q ss_pred             CCCceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCc
Q 028300            9 NSYDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQ   87 (211)
Q Consensus         9 ~~~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d   87 (211)
                      ......+||+++|++|+|||||+++|.+..+ ....++.+.++....+.+.+..+.+.+||+||+..+...+..+++.+|
T Consensus         7 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d   86 (181)
T 2efe_B            7 GNKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAA   86 (181)
T ss_dssp             ---CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCS
T ss_pred             CCCccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCC
Confidence            3456789999999999999999999999888 555678888888888888888999999999999999999999999999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHH
Q 028300           88 GIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQ  167 (211)
Q Consensus        88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~  167 (211)
                      ++++|||++++.+++.+.. |+..+... ...++|+++|+||+|+.+.+.+..++...++...+++++++||+++.|+++
T Consensus        87 ~~i~v~d~~~~~s~~~~~~-~~~~~~~~-~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~  164 (181)
T 2efe_B           87 AAIIVFDVTNQASFERAKK-WVQELQAQ-GNPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKE  164 (181)
T ss_dssp             EEEEEEETTCHHHHHHHHH-HHHHHHHH-SCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCSSSCTTHHH
T ss_pred             EEEEEEECCCHHHHHHHHH-HHHHHHHh-cCCCCcEEEEEECCcccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHH
Confidence            9999999999999999887 77776655 346899999999999987777888888899989999999999999999999


Q ss_pred             HHHHHHHHHHhcc
Q 028300          168 CFEQLALKIMEVP  180 (211)
Q Consensus       168 l~~~i~~~~~~~~  180 (211)
                      +|++|.+.+.+.+
T Consensus       165 l~~~l~~~~~~~~  177 (181)
T 2efe_B          165 IFYEIARRLPRVQ  177 (181)
T ss_dssp             HHHHHHHTCC---
T ss_pred             HHHHHHHHHHhcC
Confidence            9999998776544

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=100.00  E-value=1.1e-33  Score=202.76  Aligned_cols=169  Identities=31%  Similarity=0.547  Sum_probs=142.2

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEE
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGII   90 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (211)
                      ..++||+++|++|||||||+++|.+..+ ..+.++. .+.....+.+++..+.+.+||+||++.+...+..+++.+|+++
T Consensus         2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i   80 (189)
T 4dsu_A            2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL   80 (189)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTC-CEEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEE
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCc-hheEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEE
Confidence            4689999999999999999999999887 4444444 3444566677888999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHHH
Q 028300           91 LVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFE  170 (211)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~  170 (211)
                      +|||++++.+++.+.. |...+.......+.|+++|+||+|+. ...+..+....++..++++++++||+++.|++++|+
T Consensus        81 ~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~p~i~v~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~  158 (189)
T 4dsu_A           81 CVFAINNTKSFEDIHH-YREQIKRVKDSEDVPMVLVGNKCDLP-SRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFY  158 (189)
T ss_dssp             EEEETTCHHHHHHHHH-HHHHHHHHTTCSCCCEEEEEECTTSS-SCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHH
T ss_pred             EEEECCCHHHHHHHHH-HHHHHHHhcCCCCCcEEEEEECccCc-ccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence            9999999999999988 77776665456789999999999986 345677788888889999999999999999999999


Q ss_pred             HHHHHHHhccchh
Q 028300          171 QLALKIMEVPSLL  183 (211)
Q Consensus       171 ~i~~~~~~~~~~~  183 (211)
                      +|.+.+.+.....
T Consensus       159 ~l~~~~~~~~~~~  171 (189)
T 4dsu_A          159 TLVREIRKHKEKM  171 (189)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhhc
Confidence            9999988766543

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=100.00  E-value=1.2e-33  Score=203.77  Aligned_cols=173  Identities=28%  Similarity=0.539  Sum_probs=147.4

Q ss_pred             CCCCCCceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhcc
Q 028300            6 GQSNSYDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYR   84 (211)
Q Consensus         6 ~~~~~~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~   84 (211)
                      .........+||+++|.+|+|||||+++|.+..+ ..+.++.+..+. ..+.+.+..+.+.+||+||++.+...+..+++
T Consensus        15 ~~~~~~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~   93 (194)
T 3reg_A           15 GKIENGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFS-HVMKYKNEEFILHLWDTAGQEEYDRLRPLSYA   93 (194)
T ss_dssp             ------CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEEETTEEEEEEEEEECCSGGGTTTGGGGCT
T ss_pred             ccccccceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeE-EEEEECCEEEEEEEEECCCcHHHHHHhHhhcc
Confidence            3344567889999999999999999999999988 556677776665 35677888999999999999999999999999


Q ss_pred             CCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCC--cccCHHHHHHHHHHcCCe-EEEeeccC
Q 028300           85 GAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSE--RVVSREEGIALAKEHGSL-FLECSAKT  161 (211)
Q Consensus        85 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~--~~v~~~~~~~~~~~~~~~-~~~~Sa~~  161 (211)
                      ++|++++|||++++.+++.+...|...+...  ..++|+++|+||+|+.+.  +.+..++...++..++++ |+++||++
T Consensus        94 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  171 (194)
T 3reg_A           94 DSDVVLLCFAVNNRTSFDNISTKWEPEIKHY--IDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVA  171 (194)
T ss_dssp             TCSEEEEEEETTCHHHHHHHHHTHHHHHHHH--CTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTTT
T ss_pred             CCcEEEEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeecCC
Confidence            9999999999999999999866588888755  468999999999999753  667888889999999988 99999999


Q ss_pred             CCcHHHHHHHHHHHHHhccc
Q 028300          162 RENVEQCFEQLALKIMEVPS  181 (211)
Q Consensus       162 ~~gv~~l~~~i~~~~~~~~~  181 (211)
                      +.|++++|++|.+.+.+.+.
T Consensus       172 ~~gi~~l~~~l~~~i~~~~~  191 (194)
T 3reg_A          172 KIGLNEVFEKSVDCIFSNKP  191 (194)
T ss_dssp             TBSHHHHHHHHHHHHHCSCC
T ss_pred             CCCHHHHHHHHHHHHHhcCC
Confidence            99999999999999887654

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=100.00  E-value=7e-34  Score=200.31  Aligned_cols=165  Identities=39%  Similarity=0.649  Sum_probs=146.5

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEE
Q 028300           11 YDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGI   89 (211)
Q Consensus        11 ~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~   89 (211)
                      ....++|+++|++|+|||||+++|.++.+ ..+.++.+.++....+.+.+..+.+.+||+||+..+...+..+++++|++
T Consensus         3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~   82 (170)
T 1r2q_A            3 KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAA   82 (170)
T ss_dssp             EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEE
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEE
Confidence            35789999999999999999999999887 55678888888888888888899999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHH
Q 028300           90 ILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCF  169 (211)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~  169 (211)
                      ++|||++++.+++.+.. |...+... ...++|+++|+||+|+.+.+.+..++...++...+++++++||+++.|++++|
T Consensus        83 i~v~d~~~~~s~~~~~~-~~~~~~~~-~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~  160 (170)
T 1r2q_A           83 IVVYDITNEESFARAKN-WVKELQRQ-ASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIF  160 (170)
T ss_dssp             EEEEETTCHHHHHHHHH-HHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHH
T ss_pred             EEEEECCCHHHHHHHHH-HHHHHHHh-cCCCCcEEEEEECccCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Confidence            99999999999999887 76666554 34689999999999997767777888888888899999999999999999999


Q ss_pred             HHHHHHHH
Q 028300          170 EQLALKIM  177 (211)
Q Consensus       170 ~~i~~~~~  177 (211)
                      ++|.+.+.
T Consensus       161 ~~i~~~~~  168 (170)
T 1r2q_A          161 MAIAKKLP  168 (170)
T ss_dssp             HHHHHTSC
T ss_pred             HHHHHHHh
Confidence            99988664

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=100.00  E-value=7.8e-34  Score=203.19  Aligned_cols=170  Identities=50%  Similarity=0.805  Sum_probs=150.8

Q ss_pred             CCCceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCc
Q 028300            9 NSYDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQ   87 (211)
Q Consensus         9 ~~~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d   87 (211)
                      ...+..+||+|+|++|||||||+++|.+..+ ..+.++.+.++....+..++..+.+.+||+||++.+...+..+++++|
T Consensus         5 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   84 (186)
T 2bme_A            5 ETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAA   84 (186)
T ss_dssp             CCCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCS
T ss_pred             cccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCC
Confidence            3457889999999999999999999999888 566777787888788888888899999999999999999999999999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHH
Q 028300           88 GIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQ  167 (211)
Q Consensus        88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~  167 (211)
                      ++++|||++++.++..+.. |...+... ...++|+++|+||+|+...+.+...+...++...+++++++||+++.|+++
T Consensus        85 ~~i~v~d~~~~~s~~~~~~-~~~~~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  162 (186)
T 2bme_A           85 GALLVYDITSRETYNALTN-WLTDARML-ASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEE  162 (186)
T ss_dssp             EEEEEEETTCHHHHHTHHH-HHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHH
T ss_pred             EEEEEEECcCHHHHHHHHH-HHHHHHHh-cCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEecCCCCCCHHH
Confidence            9999999999999999887 77766654 346899999999999977677888888888989999999999999999999


Q ss_pred             HHHHHHHHHHhcc
Q 028300          168 CFEQLALKIMEVP  180 (211)
Q Consensus       168 l~~~i~~~~~~~~  180 (211)
                      +|++|.+.+.+..
T Consensus       163 l~~~l~~~~~~~~  175 (186)
T 2bme_A          163 AFVQCARKILNKI  175 (186)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999887654

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=100.00  E-value=4.9e-34  Score=201.28  Aligned_cols=167  Identities=39%  Similarity=0.684  Sum_probs=141.0

Q ss_pred             CCceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcE
Q 028300           10 SYDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQG   88 (211)
Q Consensus        10 ~~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~   88 (211)
                      ..+..+||+++|++|+|||||+++|.+..+ ..+.++.+.++....+.+++..+.+.+||+||++.+...+..+++++|+
T Consensus         2 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~   81 (170)
T 1z08_A            2 SRAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNG   81 (170)
T ss_dssp             --CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSE
T ss_pred             CCCcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCE
Confidence            346789999999999999999999999888 5677888888877778888888999999999999999889999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHH
Q 028300           89 IILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQC  168 (211)
Q Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l  168 (211)
                      +++|||++++.+++.+.. |...+... ...++|+++|+||+|+.+.+.+..++...++...+++++++||+++.|++++
T Consensus        82 ~i~v~d~~~~~s~~~~~~-~~~~~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  159 (170)
T 1z08_A           82 AILVYDITDEDSFQKVKN-WVKELRKM-LGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEEL  159 (170)
T ss_dssp             EEEEEETTCHHHHHHHHH-HHHHHHHH-HGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHH
T ss_pred             EEEEEECcCHHHHHHHHH-HHHHHHHh-cCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHH
Confidence            999999999999999887 77776654 2357999999999999877778888888999999999999999999999999


Q ss_pred             HHHHHHHHHh
Q 028300          169 FEQLALKIME  178 (211)
Q Consensus       169 ~~~i~~~~~~  178 (211)
                      |++|.+.+.+
T Consensus       160 ~~~l~~~~~~  169 (170)
T 1z08_A          160 FLDLCKRMIE  169 (170)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHhh
Confidence            9999988764

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=100.00  E-value=1.3e-33  Score=198.97  Aligned_cols=165  Identities=37%  Similarity=0.630  Sum_probs=148.7

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEE
Q 028300           11 YDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGI   89 (211)
Q Consensus        11 ~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~   89 (211)
                      ..+.+||+++|++|+|||||+++|.+..+ ..+.++.+.++....+.+.+....+.+||+||++.+...+..+++.+|++
T Consensus         3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~   82 (170)
T 1z0j_A            3 ALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAA   82 (170)
T ss_dssp             SEEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEE
T ss_pred             CCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEE
Confidence            46789999999999999999999999987 66788888888888888888899999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHH
Q 028300           90 ILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCF  169 (211)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~  169 (211)
                      ++|||++++.++..+.. |...+... .....|+++|+||+|+.+.+.+..++...++...+++++++||+++.|++++|
T Consensus        83 i~v~d~~~~~s~~~~~~-~~~~l~~~-~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~  160 (170)
T 1z0j_A           83 IIVYDITKEETFSTLKN-WVRELRQH-GPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELF  160 (170)
T ss_dssp             EEEEETTCHHHHHHHHH-HHHHHHHH-SCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHH
T ss_pred             EEEEECcCHHHHHHHHH-HHHHHHHh-CCCCCcEEEEEECCccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHH
Confidence            99999999999999877 77777654 45689999999999998777778888888888899999999999999999999


Q ss_pred             HHHHHHHH
Q 028300          170 EQLALKIM  177 (211)
Q Consensus       170 ~~i~~~~~  177 (211)
                      ++|.+.+.
T Consensus       161 ~~i~~~i~  168 (170)
T 1z0j_A          161 IEISRRIP  168 (170)
T ss_dssp             HHHHHHCC
T ss_pred             HHHHHHHh
Confidence            99988764

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=100.00  E-value=5.3e-34  Score=206.64  Aligned_cols=171  Identities=47%  Similarity=0.729  Sum_probs=141.8

Q ss_pred             CCCceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCc
Q 028300            9 NSYDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQ   87 (211)
Q Consensus         9 ~~~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d   87 (211)
                      ...+..+||+|+|++|+|||||+++|.+..+ ..+.++.+.++....+.+.+..+.+.+||+||+..+...+..+++.+|
T Consensus        20 ~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d   99 (200)
T 2o52_A           20 IWSDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAA   99 (200)
T ss_dssp             --CCEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCS
T ss_pred             cccCcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCC
Confidence            3457889999999999999999999998887 556677787887788888888899999999999999999999999999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHH
Q 028300           88 GIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQ  167 (211)
Q Consensus        88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~  167 (211)
                      ++|+|||++++.+++.+.. |+..+... ...++|+++|+||+|+...+.+...+...++...+++++++||+++.|+++
T Consensus       100 ~~i~v~d~~~~~s~~~~~~-~~~~~~~~-~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gi~~  177 (200)
T 2o52_A          100 GALLVYDITSRETYNSLAA-WLTDARTL-ASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEE  177 (200)
T ss_dssp             EEEEEEETTCHHHHHTHHH-HHHHHHHH-TCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHH
T ss_pred             EEEEEEECcCHHHHHHHHH-HHHHHHHh-cCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence            9999999999999999887 77766554 346899999999999977777788888888889999999999999999999


Q ss_pred             HHHHHHHHHHhccc
Q 028300          168 CFEQLALKIMEVPS  181 (211)
Q Consensus       168 l~~~i~~~~~~~~~  181 (211)
                      +|++|.+.+.+...
T Consensus       178 l~~~l~~~i~~~~~  191 (200)
T 2o52_A          178 AFLKCARTILNKID  191 (200)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999998876543

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=100.00  E-value=3.9e-34  Score=207.46  Aligned_cols=173  Identities=28%  Similarity=0.438  Sum_probs=140.8

Q ss_pred             CCCCceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCC
Q 028300            8 SNSYDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGA   86 (211)
Q Consensus         8 ~~~~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~   86 (211)
                      .......+||+|+|.+|||||||+++|.+..+ ..+.++.+..+ ...+.+.+..+.+.+||+||++.+...+..+++.+
T Consensus        18 ~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   96 (201)
T 3oes_A           18 GMPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGV   96 (201)
T ss_dssp             -----CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC----CEEEEEEEECCCCTTCCCCGGGTTTC
T ss_pred             CCCCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEECCCccchHHHHHHHHhcC
Confidence            34456789999999999999999999999988 55556666655 45555666778999999999999999999999999


Q ss_pred             cEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHH
Q 028300           87 QGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVE  166 (211)
Q Consensus        87 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~  166 (211)
                      |++++|||++++++++.+.. |...+.......++|+++|+||+|+.+.+.+...+...++..++++|+++||+++.|++
T Consensus        97 d~~i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~  175 (201)
T 3oes_A           97 HGYVLVYSVTSLHSFQVIES-LYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQ  175 (201)
T ss_dssp             CEEEEEEETTCHHHHHHHHH-HHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHH
T ss_pred             CEEEEEEeCCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHhCCeEEEEeCCCCCCHH
Confidence            99999999999999999987 77777655456689999999999998888888888999999999999999999999999


Q ss_pred             HHHHHHHHHHHhccch
Q 028300          167 QCFEQLALKIMEVPSL  182 (211)
Q Consensus       167 ~l~~~i~~~~~~~~~~  182 (211)
                      ++|++|.+.+.+....
T Consensus       176 ~l~~~l~~~i~~~~~~  191 (201)
T 3oes_A          176 GIFTKVIQEIARVENS  191 (201)
T ss_dssp             HHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHHhhhhh
Confidence            9999999998876543

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=100.00  E-value=1.6e-33  Score=198.49  Aligned_cols=163  Identities=45%  Similarity=0.751  Sum_probs=144.8

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEE
Q 028300           13 LSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIIL   91 (211)
Q Consensus        13 ~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   91 (211)
                      ..+||+++|++|+|||||+++|.+..+ ..+.++.+.++....+.+++..+.+.+||+||+..+...+..+++++|++++
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~   81 (170)
T 1ek0_A            2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV   81 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence            468999999999999999999999887 5677888888888888888899999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCC---cccCHHHHHHHHHHcCCeEEEeeccCCCcHHHH
Q 028300           92 VYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSE---RVVSREEGIALAKEHGSLFLECSAKTRENVEQC  168 (211)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~---~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l  168 (211)
                      |||++++.++..+.. |...+... ...+.|+++|+||+|+.+.   +.+..++...++...+++++++||+++.|++++
T Consensus        82 v~d~~~~~s~~~~~~-~~~~~~~~-~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  159 (170)
T 1ek0_A           82 VYDVTKPQSFIKARH-WVKELHEQ-ASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDV  159 (170)
T ss_dssp             EEETTCHHHHHHHHH-HHHHHHHH-SCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHH
T ss_pred             EEecCChHHHHHHHH-HHHHHHHh-cCCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence            999999999999888 77766654 3468999999999999654   567778888888889999999999999999999


Q ss_pred             HHHHHHHHH
Q 028300          169 FEQLALKIM  177 (211)
Q Consensus       169 ~~~i~~~~~  177 (211)
                      |++|.+.+.
T Consensus       160 ~~~l~~~i~  168 (170)
T 1ek0_A          160 FLGIGEKIP  168 (170)
T ss_dssp             HHHHHTTSC
T ss_pred             HHHHHHHHh
Confidence            999987653

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=100.00  E-value=2.7e-33  Score=199.34  Aligned_cols=168  Identities=35%  Similarity=0.574  Sum_probs=145.9

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEE
Q 028300           11 YDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGI   89 (211)
Q Consensus        11 ~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~   89 (211)
                      ....++|+++|++|+|||||+++|.+..+ ..+.++.+..+. ..+.+++..+.+.+||+||++++...+..+++.+|++
T Consensus         6 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~   84 (181)
T 2fn4_A            6 PSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGF   84 (181)
T ss_dssp             SSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEE
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE-EEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCEE
Confidence            45689999999999999999999999887 556666666655 5567788889999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHH
Q 028300           90 ILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCF  169 (211)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~  169 (211)
                      ++|||+++++++..+.. |...+.......++|+++|+||+|+.+.+.+..++...++...+++++++||+++.|++++|
T Consensus        85 i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~  163 (181)
T 2fn4_A           85 LLVFAINDRQSFNEVGK-LFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAF  163 (181)
T ss_dssp             EEEEETTCHHHHHHHHH-HHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHH
T ss_pred             EEEEeCCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHH
Confidence            99999999999999988 66655333356689999999999998777788888888888899999999999999999999


Q ss_pred             HHHHHHHHhcc
Q 028300          170 EQLALKIMEVP  180 (211)
Q Consensus       170 ~~i~~~~~~~~  180 (211)
                      ++|.+.+.+..
T Consensus       164 ~~l~~~~~~~~  174 (181)
T 2fn4_A          164 EQLVRAVRKYQ  174 (181)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHhh
Confidence            99999887654

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=100.00  E-value=4.6e-34  Score=209.35  Aligned_cols=172  Identities=35%  Similarity=0.637  Sum_probs=147.0

Q ss_pred             CCCceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCE----------EEEEEEEeCCChhhhcc
Q 028300            9 NSYDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGK----------RLKLTIWDTAGQERFRT   77 (211)
Q Consensus         9 ~~~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~----------~~~~~l~D~~g~~~~~~   77 (211)
                      ...+..+||+|+|++|+|||||+++|.+..+ ..+.++.+.++....+.+.+.          .+.+.|||+||++.+..
T Consensus        20 ~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~   99 (217)
T 2f7s_A           20 GDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRS   99 (217)
T ss_dssp             -CCSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHH
T ss_pred             CCcceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHh
Confidence            4567889999999999999999999998887 445566666666666666555          78999999999999999


Q ss_pred             chhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEe
Q 028300           78 LTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLEC  157 (211)
Q Consensus        78 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~  157 (211)
                      .+..+++.+|++|+|||+++..++..+.. |+..+.......++|+++|+||+|+.+.+.+..++...++..++++++++
T Consensus       100 ~~~~~~~~~d~iilV~D~~~~~s~~~~~~-~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~  178 (217)
T 2f7s_A          100 LTTAFFRDAMGFLLMFDLTSQQSFLNVRN-WMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFET  178 (217)
T ss_dssp             HHHHHHTTCCEEEEEEETTCHHHHHHHHH-HHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEE
T ss_pred             HHHHHhcCCCEEEEEEECcCHHHHHHHHH-HHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHHHCCCcEEEE
Confidence            99999999999999999999999999887 87777655334689999999999997777788888889999999999999


Q ss_pred             eccCCCcHHHHHHHHHHHHHhccc
Q 028300          158 SAKTRENVEQCFEQLALKIMEVPS  181 (211)
Q Consensus       158 Sa~~~~gv~~l~~~i~~~~~~~~~  181 (211)
                      ||+++.|++++|++|.+.+.+...
T Consensus       179 Sa~~g~gi~~l~~~l~~~i~~~~~  202 (217)
T 2f7s_A          179 SAATGQNVEKAVETLLDLIMKRME  202 (217)
T ss_dssp             BTTTTBTHHHHHHHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHHHHHHhh
Confidence            999999999999999998877543

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=100.00  E-value=1.1e-33  Score=203.77  Aligned_cols=169  Identities=44%  Similarity=0.819  Sum_probs=143.3

Q ss_pred             CCCCceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCC
Q 028300            8 SNSYDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGA   86 (211)
Q Consensus         8 ~~~~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~   86 (211)
                      ....+..+||+|+|.+|+|||||+++|.+..+ ..+.++.+.++....+.+.+..+.+.+||+||+..+...+..+++.+
T Consensus        20 p~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~   99 (192)
T 2il1_A           20 PRPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSA   99 (192)
T ss_dssp             --CCSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHC
T ss_pred             CcccCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCC
Confidence            35567889999999999999999999998887 56677888888888888888899999999999999998899999999


Q ss_pred             cEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHc-CCeEEEeeccCCCcH
Q 028300           87 QGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEH-GSLFLECSAKTRENV  165 (211)
Q Consensus        87 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~-~~~~~~~Sa~~~~gv  165 (211)
                      |++|+|||+++..+++.+.. |...+... ...++|+++|+||+|+.+.+.+..++...++... +++++++||+++.|+
T Consensus       100 d~iilV~D~~~~~s~~~~~~-~~~~i~~~-~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi  177 (192)
T 2il1_A          100 KGIILVYDITKKETFDDLPK-WMKMIDKY-ASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNV  177 (192)
T ss_dssp             SEEEEEEETTCHHHHHTHHH-HHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEEECBTTTTBSH
T ss_pred             CEEEEEEECcCHHHHHHHHH-HHHHHHHh-cCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCeEEEEeCCCCCCH
Confidence            99999999999999999877 87777655 4468999999999999777777888888888774 789999999999999


Q ss_pred             HHHHHHHHHHHHh
Q 028300          166 EQCFEQLALKIME  178 (211)
Q Consensus       166 ~~l~~~i~~~~~~  178 (211)
                      +++|++|.+.+.+
T Consensus       178 ~~l~~~l~~~i~~  190 (192)
T 2il1_A          178 DEIFLKLVDDILK  190 (192)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999998765

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=7.7e-35  Score=209.54  Aligned_cols=172  Identities=45%  Similarity=0.769  Sum_probs=153.7

Q ss_pred             CCCCCceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccC
Q 028300            7 QSNSYDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRG   85 (211)
Q Consensus         7 ~~~~~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~   85 (211)
                      .+...+..+||+|+|++|+|||||+++|.+..+ ..+.++.+.++....+...+..+.+.+||+||++.+...+..+++.
T Consensus        16 ~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~   95 (191)
T 3dz8_A           16 FQGNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRG   95 (191)
T ss_dssp             ETTEEEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTT
T ss_pred             cccccCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHcc
Confidence            345567889999999999999999999999887 5666777888888888888888999999999999999999999999


Q ss_pred             CcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcH
Q 028300           86 AQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENV  165 (211)
Q Consensus        86 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv  165 (211)
                      +|++++|||++++.+++.+.. |...+... ...++|+++|+||+|+.+.+.+..++...++..++++++++||+++.|+
T Consensus        96 ~d~~i~v~d~~~~~s~~~~~~-~~~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  173 (191)
T 3dz8_A           96 AMGFILMYDITNEESFNAVQD-WATQIKTY-SWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISV  173 (191)
T ss_dssp             CCEEEEEEETTCHHHHHTHHH-HHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSH
T ss_pred             CCEEEEEEECcCHHHHHHHHH-HHHHHHHh-cCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEECCCCCCH
Confidence            999999999999999999888 88887765 4568999999999999877788888889999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcc
Q 028300          166 EQCFEQLALKIMEVP  180 (211)
Q Consensus       166 ~~l~~~i~~~~~~~~  180 (211)
                      +++|++|.+.+.+..
T Consensus       174 ~~l~~~l~~~i~~~~  188 (191)
T 3dz8_A          174 RQAFERLVDAICDKM  188 (191)
T ss_dssp             HHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHhc
Confidence            999999999887653

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=100.00  E-value=1.4e-33  Score=203.69  Aligned_cols=172  Identities=27%  Similarity=0.330  Sum_probs=141.1

Q ss_pred             CCCCceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhcc-chhhhccC
Q 028300            8 SNSYDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRT-LTSSYYRG   85 (211)
Q Consensus         8 ~~~~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~-~~~~~~~~   85 (211)
                      +......+||+|+|++|||||||+++|.+..+ ....++.+.+.....+.+++..+.+.+||++|+..+.. ++..+++.
T Consensus        17 ~~~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~   96 (195)
T 3cbq_A           17 QGQKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQT   96 (195)
T ss_dssp             -----CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHH
T ss_pred             CCCCCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhcc
Confidence            34456789999999999999999999975443 22334455555666677888899999999999987664 67778899


Q ss_pred             CcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcH
Q 028300           86 AQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENV  165 (211)
Q Consensus        86 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv  165 (211)
                      +|++|+|||++++.+++.+.. |...+.......++|+++|+||+|+.+.+.+..++...++..++++|+++||+++.|+
T Consensus        97 ~d~~ilv~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v  175 (195)
T 3cbq_A           97 GDAFLIVFSVTDRRSFSKVPE-TLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNT  175 (195)
T ss_dssp             CSEEEEEEETTCHHHHHTHHH-HHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEEEBTTTTBSH
T ss_pred             CCEEEEEEECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHHhCCEEEEEcCCCCCCH
Confidence            999999999999999999988 7777665433468999999999999877778888888899889999999999999999


Q ss_pred             HHHHHHHHHHHHhcc
Q 028300          166 EQCFEQLALKIMEVP  180 (211)
Q Consensus       166 ~~l~~~i~~~~~~~~  180 (211)
                      +++|++|++.+...+
T Consensus       176 ~~lf~~l~~~i~~~~  190 (195)
T 3cbq_A          176 RELFEGAVRQIRLRR  190 (195)
T ss_dssp             HHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHhc
Confidence            999999999887544

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=100.00  E-value=1.9e-33  Score=197.78  Aligned_cols=164  Identities=37%  Similarity=0.606  Sum_probs=146.5

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEE
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGII   90 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (211)
                      +..+||+++|++|+|||||+++|.+..+ ..+.++.+.++....+.+.+..+.+.+||+||+..+...+..+++.+|+++
T Consensus         3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   82 (168)
T 1z2a_A            3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACV   82 (168)
T ss_dssp             -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEE
T ss_pred             ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEE
Confidence            5689999999999999999999999887 566778888888888888888999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHHH
Q 028300           91 LVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFE  170 (211)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~  170 (211)
                      +|||++++.+++.+.. |...+....  .+.|+++|+||+|+.+.+.+..++...++...+++++++||+++.|++++|+
T Consensus        83 ~v~d~~~~~s~~~~~~-~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~  159 (168)
T 1z2a_A           83 LVFSTTDRESFEAISS-WREKVVAEV--GDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFK  159 (168)
T ss_dssp             EEEETTCHHHHHTHHH-HHHHHHHHH--CSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHH
T ss_pred             EEEECcCHHHHHHHHH-HHHHHHHhC--CCCCEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHH
Confidence            9999999999998888 777766552  6899999999999977677778888888888999999999999999999999


Q ss_pred             HHHHHHHh
Q 028300          171 QLALKIME  178 (211)
Q Consensus       171 ~i~~~~~~  178 (211)
                      +|.+.+.+
T Consensus       160 ~l~~~~~~  167 (168)
T 1z2a_A          160 YLAEKHLQ  167 (168)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHHhh
Confidence            99988764

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=100.00  E-value=2.5e-33  Score=201.65  Aligned_cols=172  Identities=35%  Similarity=0.644  Sum_probs=148.8

Q ss_pred             CCCceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeE-EEEEEECCE---------EEEEEEEeCCChhhhcc
Q 028300            9 NSYDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFK-IKLLTVAGK---------RLKLTIWDTAGQERFRT   77 (211)
Q Consensus         9 ~~~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~-~~~~~~~~~---------~~~~~l~D~~g~~~~~~   77 (211)
                      ...+..+||+|+|++|+|||||+++|.+..+ ..+.++.+.++. ...+...+.         .+.+.+||+||+..+..
T Consensus         6 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~   85 (195)
T 3bc1_A            6 GDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRS   85 (195)
T ss_dssp             CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHH
T ss_pred             cccceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHH
Confidence            3467889999999999999999999999887 566777777776 555555554         78999999999999999


Q ss_pred             chhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEe
Q 028300           78 LTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLEC  157 (211)
Q Consensus        78 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~  157 (211)
                      .+..+++++|++|+|||++++.++..+.. |+..+.......++|+++|+||+|+.+.+.+..++...++...+++++++
T Consensus        86 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  164 (195)
T 3bc1_A           86 LTTAFFRDAMGFLLLFDLTNEQSFLNVRN-WISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFET  164 (195)
T ss_dssp             HHHHTTTTCSEEEEEEETTCHHHHHTHHH-HHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEEC
T ss_pred             HHHHHHcCCCEEEEEEECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCCEEEE
Confidence            99999999999999999999999999887 77777665444789999999999997767778888888888899999999


Q ss_pred             eccCCCcHHHHHHHHHHHHHhccc
Q 028300          158 SAKTRENVEQCFEQLALKIMEVPS  181 (211)
Q Consensus       158 Sa~~~~gv~~l~~~i~~~~~~~~~  181 (211)
                      ||+++.|++++|++|.+.+.+...
T Consensus       165 Sa~~~~~v~~l~~~l~~~~~~~~~  188 (195)
T 3bc1_A          165 SAANGTNISHAIEMLLDLIMKRME  188 (195)
T ss_dssp             CTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHHHHHHhh
Confidence            999999999999999998876543

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=100.00  E-value=1.9e-33  Score=201.87  Aligned_cols=168  Identities=39%  Similarity=0.649  Sum_probs=144.8

Q ss_pred             CCceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhc-cchhhhccCCc
Q 028300           10 SYDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFR-TLTSSYYRGAQ   87 (211)
Q Consensus        10 ~~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~-~~~~~~~~~~d   87 (211)
                      .....+||+|+|.+|+|||||+++|.+..+ ..+.++.+.++....+.+++..+.+.+||+||++.+. .++..+++++|
T Consensus        16 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d   95 (189)
T 1z06_A           16 SRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVH   95 (189)
T ss_dssp             ---CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCC
T ss_pred             CCCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCC
Confidence            345679999999999999999999999888 5677788888888888888888999999999999988 88899999999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCC---Cc
Q 028300           88 GIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTR---EN  164 (211)
Q Consensus        88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~---~g  164 (211)
                      ++|+|||++++.++..+.. |...+.......++|+++|+||+|+.+.+.+..++...++..++++++++||+++   .|
T Consensus        96 ~iilv~D~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~  174 (189)
T 1z06_A           96 AVVFVYDMTNMASFHSLPA-WIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDH  174 (189)
T ss_dssp             EEEEEEETTCHHHHHTHHH-HHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSC
T ss_pred             EEEEEEECcCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHHHcCCEEEEEeCCcCCcccC
Confidence            9999999999999999888 7777766645678999999999999777778888888899899999999999999   99


Q ss_pred             HHHHHHHHHHHHHh
Q 028300          165 VEQCFEQLALKIME  178 (211)
Q Consensus       165 v~~l~~~i~~~~~~  178 (211)
                      ++++|++|.+.+.+
T Consensus       175 i~~l~~~l~~~i~~  188 (189)
T 1z06_A          175 VEAIFMTLAHKLKS  188 (189)
T ss_dssp             HHHHHHHHC-----
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999999887653

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=100.00  E-value=1.5e-33  Score=206.40  Aligned_cols=173  Identities=26%  Similarity=0.487  Sum_probs=142.3

Q ss_pred             CCCCCceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccC
Q 028300            7 QSNSYDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRG   85 (211)
Q Consensus         7 ~~~~~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~   85 (211)
                      .+......+||+|+|.+|||||||+++|.++.+ ..+.++.+..+ ...+.+++..+.+.+||++|++.+..++..++++
T Consensus        20 ~~~~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~   98 (214)
T 3q3j_B           20 APQPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPYYDNVRPLCYSD   98 (214)
T ss_dssp             -------CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTT
T ss_pred             CCCCccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeE-EEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCC
Confidence            445567789999999999999999999999988 55677777666 3455667778999999999999999999999999


Q ss_pred             CcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCC------------cccCHHHHHHHHHHcCC-
Q 028300           86 AQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSE------------RVVSREEGIALAKEHGS-  152 (211)
Q Consensus        86 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~------------~~v~~~~~~~~~~~~~~-  152 (211)
                      +|++|+|||++++.+++.+...|...+...  ..++|+++|+||+|+.+.            +.+..++...++..+++ 
T Consensus        99 ~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  176 (214)
T 3q3j_B           99 SDAVLLCFDISRPETVDSALKKWRTEILDY--CPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAE  176 (214)
T ss_dssp             CSEEEEEEETTCTHHHHHHHTHHHHHHHHH--CTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCS
T ss_pred             CeEEEEEEECcCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCC
Confidence            999999999999999999644598888766  468999999999999653            56888899999999999 


Q ss_pred             eEEEeeccCCCc-HHHHHHHHHHHHHhccch
Q 028300          153 LFLECSAKTREN-VEQCFEQLALKIMEVPSL  182 (211)
Q Consensus       153 ~~~~~Sa~~~~g-v~~l~~~i~~~~~~~~~~  182 (211)
                      +|+++||+++.| ++++|++|.+.+.+....
T Consensus       177 ~~~e~SA~~g~g~v~~lf~~l~~~~~~~~~~  207 (214)
T 3q3j_B          177 IYLEGSAFTSEKSIHSIFRTASMLCLNKPSP  207 (214)
T ss_dssp             EEEECCTTTCHHHHHHHHHHHHHHHHC----
T ss_pred             EEEEeccCCCcccHHHHHHHHHHHHhccCcC
Confidence            999999999998 999999999998876543

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=100.00  E-value=1.8e-33  Score=198.31  Aligned_cols=165  Identities=27%  Similarity=0.332  Sum_probs=131.8

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhcc-chhhhccCCcEEEE
Q 028300           14 SFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRT-LTSSYYRGAQGIIL   91 (211)
Q Consensus        14 ~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~-~~~~~~~~~d~~i~   91 (211)
                      .+||+++|++|+|||||+++|.+..+ ....++.+.+.....+.+++..+.+.+||+||+..+.. ++..+++.+|++++
T Consensus         2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~   81 (169)
T 3q85_A            2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI   81 (169)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence            58999999999999999999997766 34445555666777778889999999999999988865 67778899999999


Q ss_pred             EEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHHHH
Q 028300           92 VYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQ  171 (211)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~  171 (211)
                      |||++++++++.+.. |...+.......++|+++|+||+|+.+.+.+..++...++...+++++++||+++.|++++|++
T Consensus        82 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~  160 (169)
T 3q85_A           82 VFSVTDRRSFSKVPE-TLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEG  160 (169)
T ss_dssp             EEETTCHHHHHTHHH-HHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHH
T ss_pred             EEECCChHHHHHHHH-HHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCCcEEEecCccCCCHHHHHHH
Confidence            999999999999988 6666655534458999999999999877888889999999999999999999999999999999


Q ss_pred             HHHHHHhc
Q 028300          172 LALKIMEV  179 (211)
Q Consensus       172 i~~~~~~~  179 (211)
                      +.+.+...
T Consensus       161 l~~~i~~~  168 (169)
T 3q85_A          161 AVRQIRLR  168 (169)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHhc
Confidence            99988764

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=100.00  E-value=2.3e-33  Score=200.65  Aligned_cols=171  Identities=31%  Similarity=0.523  Sum_probs=144.5

Q ss_pred             CCCCceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCC
Q 028300            8 SNSYDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGA   86 (211)
Q Consensus         8 ~~~~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~   86 (211)
                      +......+||+|+|++|+|||||+++|.+..+ ..+.++.+..+ ...+.+.+..+.+.+||+||+..+...+..+++.+
T Consensus        12 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   90 (187)
T 2a9k_A           12 SQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSG   90 (187)
T ss_dssp             -----CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHC
T ss_pred             CCCCCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEE-EEEEEECCEEEEEEEEECCCCcccHHHHHHHhccC
Confidence            44456789999999999999999999999887 45555555544 34567788889999999999999988899999999


Q ss_pred             cEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHH
Q 028300           87 QGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVE  166 (211)
Q Consensus        87 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~  166 (211)
                      |++++|||+++++++..+.. |...+.......++|+++|+||+|+.+.+.+..++...++..++++++++||+++.|++
T Consensus        91 d~~i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  169 (187)
T 2a9k_A           91 EGFLCVFSITEMESFAATAD-FREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVD  169 (187)
T ss_dssp             SEEEEEEETTCHHHHHHHHH-HHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHH
T ss_pred             CEEEEEEECcCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHH
Confidence            99999999999999999988 77776665455689999999999997777788888888999999999999999999999


Q ss_pred             HHHHHHHHHHHhcc
Q 028300          167 QCFEQLALKIMEVP  180 (211)
Q Consensus       167 ~l~~~i~~~~~~~~  180 (211)
                      ++|++|.+.+.+.+
T Consensus       170 ~l~~~l~~~i~~~~  183 (187)
T 2a9k_A          170 KVFFDLMREIRARK  183 (187)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999999887654

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=100.00  E-value=2.8e-33  Score=197.33  Aligned_cols=164  Identities=55%  Similarity=0.854  Sum_probs=139.2

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEE
Q 028300           13 LSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIIL   91 (211)
Q Consensus        13 ~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   91 (211)
                      ..+||+++|++|+|||||+++|.+..+ ..+.++.+.++....+.+.+..+.+.+||+||++.+...+..+++.+|++++
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   81 (170)
T 1g16_A            2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL   81 (170)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred             CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence            578999999999999999999999887 5667777777777777778888999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHHHH
Q 028300           92 VYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQ  171 (211)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~  171 (211)
                      |||++++.++..+.. |...+... ...++|+++|+||+|+ ..+.+..++...++..++++++++||+++.|++++|++
T Consensus        82 v~d~~~~~s~~~~~~-~~~~i~~~-~~~~~piilv~nK~Dl-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~  158 (170)
T 1g16_A           82 VYDITDERTFTNIKQ-WFKTVNEH-ANDEAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFT  158 (170)
T ss_dssp             EEETTCHHHHHTHHH-HHHHHHHH-SCTTCEEEEEEECTTC-TTCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHH
T ss_pred             EEECCCHHHHHHHHH-HHHHHHHh-cCCCCcEEEEEECccC-CcCccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHH
Confidence            999999999988887 77776654 3468999999999999 44556777888888888999999999999999999999


Q ss_pred             HHHHHHhc
Q 028300          172 LALKIMEV  179 (211)
Q Consensus       172 i~~~~~~~  179 (211)
                      |.+.+.+.
T Consensus       159 l~~~~~~~  166 (170)
T 1g16_A          159 LAKLIQEK  166 (170)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHH
Confidence            99988764

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=100.00  E-value=2.5e-33  Score=199.12  Aligned_cols=165  Identities=40%  Similarity=0.659  Sum_probs=145.6

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEE
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGII   90 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (211)
                      ...++|+|+|++|+|||||+++|++..+ ..+.++.+.++....+.+++..+.+.+||+||++.+...+..+++++|+++
T Consensus        12 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i   91 (179)
T 2y8e_A           12 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAV   91 (179)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEE
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence            4679999999999999999999998887 566778888888888888888899999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHHH
Q 028300           91 LVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFE  170 (211)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~  170 (211)
                      +|||++++.++..+.. |...+... ...++|+++|+||+|+.+.+.+...+...++...+++++++||+++.|++++|+
T Consensus        92 ~v~d~~~~~s~~~~~~-~~~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~  169 (179)
T 2y8e_A           92 VVYDITNTNSFHQTSK-WIDDVRTE-RGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFR  169 (179)
T ss_dssp             EEEETTCHHHHHTHHH-HHHHHHHH-HTTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHH
T ss_pred             EEEECCCHHHHHHHHH-HHHHHHHh-cCCCCcEEEEEECCcccccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence            9999999999999887 76666544 346899999999999987777788888888888999999999999999999999


Q ss_pred             HHHHHHHh
Q 028300          171 QLALKIME  178 (211)
Q Consensus       171 ~i~~~~~~  178 (211)
                      +|.+.+.+
T Consensus       170 ~l~~~~~~  177 (179)
T 2y8e_A          170 RVAAALPG  177 (179)
T ss_dssp             HHHHTCC-
T ss_pred             HHHHHHhh
Confidence            99886644

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=3.5e-33  Score=203.44  Aligned_cols=171  Identities=27%  Similarity=0.358  Sum_probs=138.4

Q ss_pred             CCCceeeEEEEEcCCCCcHHHHHHHHhhCC--CCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhh-hccchhhhccC
Q 028300            9 NSYDLSFKILLIGDSGVGKSSLLVSFISSS--VDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER-FRTLTSSYYRG   85 (211)
Q Consensus         9 ~~~~~~~~I~v~G~~~~GKssli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-~~~~~~~~~~~   85 (211)
                      ......+||+|+|.+|||||||+++|.+..  +....++.+.++....+.+++..+.+.+||++|... +..+...+++.
T Consensus        32 ~~~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~  111 (211)
T 2g3y_A           32 ESGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQV  111 (211)
T ss_dssp             ---CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCC
T ss_pred             ccCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhh
Confidence            455677999999999999999999999644  344445566676667778888899999999999776 45566778889


Q ss_pred             CcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcH
Q 028300           86 AQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENV  165 (211)
Q Consensus        86 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv  165 (211)
                      +|++|+|||+++.++|+.+.. |...+.......++|+++|+||+|+.+.+.+..++...++..++++|+++||++|.||
T Consensus       112 a~~~ilVydvt~~~sf~~~~~-~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~~~~e~SAk~g~~v  190 (211)
T 2g3y_A          112 GDAYLIVYSITDRASFEKASE-LRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNV  190 (211)
T ss_dssp             CSEEEEEEETTCHHHHHHHHH-HHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSH
T ss_pred             CCEEEEEEECCCHHHHHHHHH-HHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHHHHcCCEEEEEeCCCCCCH
Confidence            999999999999999999987 6665554323458999999999999776778878888888888999999999999999


Q ss_pred             HHHHHHHHHHHHhcc
Q 028300          166 EQCFEQLALKIMEVP  180 (211)
Q Consensus       166 ~~l~~~i~~~~~~~~  180 (211)
                      +++|++|.+.+....
T Consensus       191 ~elf~~l~~~i~~~~  205 (211)
T 2g3y_A          191 KELFEGIVRQVRLRR  205 (211)
T ss_dssp             HHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHhc
Confidence            999999999875433

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=100.00  E-value=2.4e-33  Score=201.17  Aligned_cols=168  Identities=28%  Similarity=0.445  Sum_probs=139.3

Q ss_pred             CCCCceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCC
Q 028300            8 SNSYDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGA   86 (211)
Q Consensus         8 ~~~~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~   86 (211)
                      .......+||+++|++|||||||+++|.+..+ ..+.++.+..+ ...+.+++..+.+.+||++|++.+..+ ..+++.+
T Consensus        15 ~~~~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~   92 (187)
T 3c5c_A           15 YFQGPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY-SSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWA   92 (187)
T ss_dssp             -----CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CCCT-HHHHTTC
T ss_pred             HhCCCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCcccee-eEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhC
Confidence            34457789999999999999999999999987 56677777665 345677888999999999999988774 6788999


Q ss_pred             cEEEEEEECCChhhHHHHHHHHHHHhhhhcc--CCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeec-cCCC
Q 028300           87 QGIILVYDVTRRETFTNLSDVWAKEVDLYST--NQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSA-KTRE  163 (211)
Q Consensus        87 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa-~~~~  163 (211)
                      |++++|||++++++++.+.. |...+.....  ..++|+++|+||+|+...+.+..++...++..++++|+++|| +++.
T Consensus        93 ~~~ilv~d~~~~~s~~~~~~-~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~g~  171 (187)
T 3c5c_A           93 HAFLVVYSVDSRQSFDSSSS-YLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFE  171 (187)
T ss_dssp             SEEEEEEETTCHHHHHHHHH-HHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECCSSSCSH
T ss_pred             CEEEEEEECCCHHHHHHHHH-HHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcCCcEEEEeecCccc
Confidence            99999999999999999987 7777665422  368999999999999777778888899999999999999999 8999


Q ss_pred             cHHHHHHHHHHHHHh
Q 028300          164 NVEQCFEQLALKIME  178 (211)
Q Consensus       164 gv~~l~~~i~~~~~~  178 (211)
                      |++++|++|.+.+.+
T Consensus       172 gv~~lf~~l~~~i~~  186 (187)
T 3c5c_A          172 HVQHVFHEAVREARR  186 (187)
T ss_dssp             HHHHHHHHHHHHHHC
T ss_pred             cHHHHHHHHHHHHhh
Confidence            999999999988754

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=100.00  E-value=4.2e-33  Score=195.84  Aligned_cols=164  Identities=32%  Similarity=0.553  Sum_probs=140.1

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEE
Q 028300           13 LSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIIL   91 (211)
Q Consensus        13 ~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   91 (211)
                      ..+||+++|++|+|||||+++|.+..+ ..+.++.+..+ ...+.+++..+.+.+||+||+.++...+..+++.+|++++
T Consensus         3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   81 (168)
T 1u8z_A            3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC   81 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEE-EEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEE
Confidence            469999999999999999999999887 45555555554 3455778888999999999999998889999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHHHH
Q 028300           92 VYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQ  171 (211)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~  171 (211)
                      |||++++++++.+.. |...+.......++|+++|+||+|+.+.+.+..++...++..++++++++||+++.|++++|++
T Consensus        82 v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  160 (168)
T 1u8z_A           82 VFSITEMESFAATAD-FREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFD  160 (168)
T ss_dssp             EEETTCHHHHHHHHH-HHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHH
T ss_pred             EEECCCHHHHHHHHH-HHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHH
Confidence            999999999999987 7777666545568999999999999777778888888899889999999999999999999999


Q ss_pred             HHHHHHh
Q 028300          172 LALKIME  178 (211)
Q Consensus       172 i~~~~~~  178 (211)
                      |.+.+.+
T Consensus       161 l~~~i~~  167 (168)
T 1u8z_A          161 LMREIRA  167 (168)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHh
Confidence            9998764

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=1.7e-33  Score=203.44  Aligned_cols=167  Identities=29%  Similarity=0.442  Sum_probs=138.9

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEE
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGII   90 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (211)
                      ...++|+++|++|||||||+++|.++.+ ..+.++.+..+. ..+..++..+.+.+||+||+..+...+..+++.+|+++
T Consensus         6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   84 (199)
T 2gf0_A            6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYR-QVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFI   84 (199)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEE-EEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEE
T ss_pred             CCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCcccccee-EEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEE
Confidence            4579999999999999999999999887 455566554443 34566788889999999999999888999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHhhhhcc-CCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHH
Q 028300           91 LVYDVTRRETFTNLSDVWAKEVDLYST-NQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCF  169 (211)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~  169 (211)
                      +|||++++.+++.+.. |...+..... ..++|+++|+||+|+.+ +.+..++...++..++++++++||+++.|++++|
T Consensus        85 ~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  162 (199)
T 2gf0_A           85 LVFSVTSKQSLEELGP-IYKLIVQIKGSVEDIPVMLVGNKCDETQ-REVDTREAQAVAQEWKCAFMETSAKMNYNVKELF  162 (199)
T ss_dssp             EEEETTCHHHHHTTHH-HHHHHHHHHSCGGGSCEEEEEECTTCSS-CSSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHH
T ss_pred             EEEECcCHHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECccCCc-cccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHH
Confidence            9999999999998887 5555544322 35789999999999965 4566777888888889999999999999999999


Q ss_pred             HHHHHHHHhccc
Q 028300          170 EQLALKIMEVPS  181 (211)
Q Consensus       170 ~~i~~~~~~~~~  181 (211)
                      ++|.+.+.+...
T Consensus       163 ~~l~~~~~~~~~  174 (199)
T 2gf0_A          163 QELLTLETRRNM  174 (199)
T ss_dssp             HHHHHHCSSSCE
T ss_pred             HHHHHHHhhhhc
Confidence            999998766543

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=100.00  E-value=1.7e-33  Score=203.84  Aligned_cols=168  Identities=40%  Similarity=0.683  Sum_probs=135.9

Q ss_pred             CCCceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCc
Q 028300            9 NSYDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQ   87 (211)
Q Consensus         9 ~~~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d   87 (211)
                      ...+..+||+|+|++|+|||||+++|++..+ ..+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|
T Consensus        23 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d  102 (199)
T 2p5s_A           23 FSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKAD  102 (199)
T ss_dssp             -----CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCS
T ss_pred             cCcCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCC
Confidence            4456789999999999999999999999987 567788888888888888999999999999999999988999999999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCC------CCcccCHHHHHHHHHHcCCeEEEeeccC
Q 028300           88 GIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRD------SERVVSREEGIALAKEHGSLFLECSAKT  161 (211)
Q Consensus        88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~------~~~~v~~~~~~~~~~~~~~~~~~~Sa~~  161 (211)
                      ++|+|||++++.++..+.. |+..+... ...++|+++|+||+|+.      ..+.+..++...++...+++++++||++
T Consensus       103 ~iilv~d~~~~~s~~~~~~-~~~~i~~~-~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~SA~~  180 (199)
T 2p5s_A          103 GVLLLYDVTCEKSFLNIRE-WVDMIEDA-AHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKD  180 (199)
T ss_dssp             EEEEEEETTCHHHHHTHHH-HHHHHHHH-C---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCEEEECCTTT
T ss_pred             EEEEEEECCChHHHHHHHH-HHHHHHHh-cCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCeEEEeeCCC
Confidence            9999999999999999887 87777654 34579999999999985      3466777888888888999999999999


Q ss_pred             CCcHHHHHHHHHHHHHh
Q 028300          162 RENVEQCFEQLALKIME  178 (211)
Q Consensus       162 ~~gv~~l~~~i~~~~~~  178 (211)
                      +.|++++|++|.+.+.+
T Consensus       181 g~gv~el~~~l~~~i~~  197 (199)
T 2p5s_A          181 GSNIVEAVLHLAREVKK  197 (199)
T ss_dssp             CTTHHHHHHHHHHHHTC
T ss_pred             CCCHHHHHHHHHHHHHh
Confidence            99999999999998764

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=100.00  E-value=1.6e-32  Score=194.81  Aligned_cols=168  Identities=39%  Similarity=0.672  Sum_probs=143.1

Q ss_pred             CCceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcE
Q 028300           10 SYDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQG   88 (211)
Q Consensus        10 ~~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~   88 (211)
                      .....++|+++|++|+|||||+++|.+..+ ..+.++.+.++....+.+++..+.+.+||+||+..+...+..+++.+|+
T Consensus         3 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~   82 (177)
T 1wms_A            3 GKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDC   82 (177)
T ss_dssp             CCEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSE
T ss_pred             CccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCE
Confidence            346789999999999999999999999887 5667888888888888888888999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHhhhhcc---CCCccEEEEeecCCCCCCcccCHHHHHHHHH-HcCCeEEEeeccCCCc
Q 028300           89 IILVYDVTRRETFTNLSDVWAKEVDLYST---NQDCVKMLVGNKVDRDSERVVSREEGIALAK-EHGSLFLECSAKTREN  164 (211)
Q Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~-~~~~~~~~~Sa~~~~g  164 (211)
                      +++|||+++..++..+.. |...+.....   ..++|+++|+||+|+. .+.+..++...++. ..+++++++||+++.|
T Consensus        83 ~i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  160 (177)
T 1wms_A           83 CLLTFSVDDSQSFQNLSN-WKKEFIYYADVKEPESFPFVILGNKIDIS-ERQVSTEEAQAWCRDNGDYPYFETSAKDATN  160 (177)
T ss_dssp             EEEEEETTCHHHHHTHHH-HHHHHHHHHTCSCTTTSCEEEEEECTTCS-SCSSCHHHHHHHHHHTTCCCEEECCTTTCTT
T ss_pred             EEEEEECcCHHHHHHHHH-HHHHHHHHccccccCCCcEEEEEECCccc-ccccCHHHHHHHHHhcCCceEEEEeCCCCCC
Confidence            999999999999998877 7776654422   2688999999999996 45667778888877 5678999999999999


Q ss_pred             HHHHHHHHHHHHHhc
Q 028300          165 VEQCFEQLALKIMEV  179 (211)
Q Consensus       165 v~~l~~~i~~~~~~~  179 (211)
                      ++++|++|.+.+.+.
T Consensus       161 i~~l~~~l~~~~~~~  175 (177)
T 1wms_A          161 VAAAFEEAVRRVLAT  175 (177)
T ss_dssp             HHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHhh
Confidence            999999999988764

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=100.00  E-value=2e-33  Score=199.67  Aligned_cols=169  Identities=34%  Similarity=0.572  Sum_probs=144.5

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECC-EEEEEEEEeCCChhhhccchhhhccCCcE
Q 028300           11 YDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAG-KRLKLTIWDTAGQERFRTLTSSYYRGAQG   88 (211)
Q Consensus        11 ~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~l~D~~g~~~~~~~~~~~~~~~d~   88 (211)
                      ....++|+++|++|+|||||+++|.+..+ ..+.++.+.++....+.+.+ ..+.+.+||+||++.+...+..+++++|+
T Consensus         3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~   82 (178)
T 2hxs_A            3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQG   82 (178)
T ss_dssp             CCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSE
T ss_pred             CCceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCE
Confidence            35679999999999999999999998887 44566777777777777766 67899999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHhhhhcc--CCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHH
Q 028300           89 IILVYDVTRRETFTNLSDVWAKEVDLYST--NQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVE  166 (211)
Q Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~  166 (211)
                      +++|||++++++++.+.. |...+..+..  ....|+++|+||+|+.+.+.+..++...++..++++++++||+++.|++
T Consensus        83 ~i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  161 (178)
T 2hxs_A           83 VLLVYDITNYQSFENLED-WYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVF  161 (178)
T ss_dssp             EEEEEETTCHHHHHTHHH-HHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEEECTTTCTTHH
T ss_pred             EEEEEECCCHHHHHHHHH-HHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHH
Confidence            999999999999998876 7777655321  2334489999999997767778888888888899999999999999999


Q ss_pred             HHHHHHHHHHHhcc
Q 028300          167 QCFEQLALKIMEVP  180 (211)
Q Consensus       167 ~l~~~i~~~~~~~~  180 (211)
                      ++|++|.+.+.+..
T Consensus       162 ~l~~~l~~~~~~~~  175 (178)
T 2hxs_A          162 LCFQKVAAEILGIK  175 (178)
T ss_dssp             HHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHhhh
Confidence            99999999887654

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=100.00  E-value=9e-33  Score=197.66  Aligned_cols=166  Identities=20%  Similarity=0.350  Sum_probs=139.2

Q ss_pred             CCCCCceeeEEEEEcCCCCcHHHHHHHHhhCCCC-CCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccC
Q 028300            7 QSNSYDLSFKILLIGDSGVGKSSLLVSFISSSVD-DLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRG   85 (211)
Q Consensus         7 ~~~~~~~~~~I~v~G~~~~GKssli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~   85 (211)
                      +.......+||+|+|++|||||||+++|+++.+. .+.++ +..+ ...+.+++..+.+.+||++|++.+.     +++.
T Consensus        13 ~~~~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t-~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~   85 (184)
T 3ihw_A           13 NLYFQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPE-GGRF-KKEIVVDGQSYLLLIRDEGGPPELQ-----FAAW   85 (184)
T ss_dssp             ---CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTT-CEEE-EEEEEETTEEEEEEEEECSSSCCHH-----HHHH
T ss_pred             CCCCCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCC-cceE-EEEEEECCEEEEEEEEECCCChhhh-----eecC
Confidence            3455678899999999999999999999999884 45555 3333 3677888899999999999988766     6778


Q ss_pred             CcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCC--CCcccCHHHHHHHHHHcC-CeEEEeeccCC
Q 028300           86 AQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRD--SERVVSREEGIALAKEHG-SLFLECSAKTR  162 (211)
Q Consensus        86 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~--~~~~v~~~~~~~~~~~~~-~~~~~~Sa~~~  162 (211)
                      +|++++|||++++.+++.+.. |...+.......++|+++|+||+|+.  ..+.+..++...++..++ ++|+++||+++
T Consensus        86 ~~~~i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~  164 (184)
T 3ihw_A           86 VDAVVFVFSLEDEISFQTVYN-YFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYG  164 (184)
T ss_dssp             CSEEEEEEETTCHHHHHHHHH-HHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTTT
T ss_pred             CCEEEEEEECcCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEecCCCC
Confidence            999999999999999999988 88877665334689999999999993  456778888899999887 89999999999


Q ss_pred             CcHHHHHHHHHHHHHhcc
Q 028300          163 ENVEQCFEQLALKIMEVP  180 (211)
Q Consensus       163 ~gv~~l~~~i~~~~~~~~  180 (211)
                      .|++++|++|.+.+.+.+
T Consensus       165 ~gv~~lf~~l~~~i~~~~  182 (184)
T 3ihw_A          165 LNVERVFQDVAQKVVALR  182 (184)
T ss_dssp             BTHHHHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHHHHHHh
Confidence            999999999999887654

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=1.3e-32  Score=198.24  Aligned_cols=167  Identities=29%  Similarity=0.561  Sum_probs=143.0

Q ss_pred             CCCceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCc
Q 028300            9 NSYDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQ   87 (211)
Q Consensus         9 ~~~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d   87 (211)
                      ......++|+++|++|+|||||+++|.+..+ ..+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++++|
T Consensus        13 ~~~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d   91 (194)
T 2atx_A           13 GPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTD   91 (194)
T ss_dssp             CCEEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCE-EEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCS
T ss_pred             CCCCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCC
Confidence            3446789999999999999999999999887 55666666554 345566777899999999999999999999999999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCC------------cccCHHHHHHHHHHcCC-eE
Q 028300           88 GIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSE------------RVVSREEGIALAKEHGS-LF  154 (211)
Q Consensus        88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~------------~~v~~~~~~~~~~~~~~-~~  154 (211)
                      ++++|||+++++++..+...|...+...  ..++|+++|+||+|+.+.            +.+..++...++..+++ +|
T Consensus        92 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  169 (194)
T 2atx_A           92 VFLICFSVVNPASFQNVKEEWVPELKEY--APNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCY  169 (194)
T ss_dssp             EEEEEEETTCHHHHHHHHHTHHHHHHHH--STTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCE
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCcEE
Confidence            9999999999999999985588887765  358999999999999654            35777888888888887 89


Q ss_pred             EEeeccCCCcHHHHHHHHHHHHHh
Q 028300          155 LECSAKTRENVEQCFEQLALKIME  178 (211)
Q Consensus       155 ~~~Sa~~~~gv~~l~~~i~~~~~~  178 (211)
                      +++||+++.|++++|++|.+.+..
T Consensus       170 ~~~Sa~~g~gi~~l~~~l~~~i~~  193 (194)
T 2atx_A          170 VECSALTQKGLKTVFDEAIIAILT  193 (194)
T ss_dssp             EECCTTTCTTHHHHHHHHHHHHHC
T ss_pred             EEeeCCCCCCHHHHHHHHHHHHhc
Confidence            999999999999999999988763

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=100.00  E-value=4.4e-33  Score=195.55  Aligned_cols=164  Identities=35%  Similarity=0.554  Sum_probs=140.7

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEE
Q 028300           13 LSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIIL   91 (211)
Q Consensus        13 ~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   91 (211)
                      .+++|+++|++|+|||||++++.++.+ ..+.++.+.. ....+.+.+....+.+||+||++.+...+..+++.+|++++
T Consensus         2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~   80 (167)
T 1kao_A            2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDF-YRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIL   80 (167)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEE-EEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCccee-EEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEE
Confidence            468999999999999999999999887 4445555433 35667778888999999999999998888999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHHHH
Q 028300           92 VYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQ  171 (211)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~  171 (211)
                      |||++++.+++.+.. |...+.......+.|+++|+||+|+.+.+.+...+...++..++++++++||+++.|++++|++
T Consensus        81 v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  159 (167)
T 1kao_A           81 VYSLVNQQSFQDIKP-MRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAE  159 (167)
T ss_dssp             EEETTCHHHHHHHHH-HHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHH
T ss_pred             EEeCCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHHhCCCEEEecCCCCcCHHHHHHH
Confidence            999999999999888 5555544434568999999999999777777888888888888999999999999999999999


Q ss_pred             HHHHHHh
Q 028300          172 LALKIME  178 (211)
Q Consensus       172 i~~~~~~  178 (211)
                      |.+.+.+
T Consensus       160 l~~~~~~  166 (167)
T 1kao_A          160 IVRQMNY  166 (167)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHhh
Confidence            9988754

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=100.00  E-value=5e-33  Score=195.47  Aligned_cols=163  Identities=37%  Similarity=0.614  Sum_probs=140.5

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEE
Q 028300           13 LSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIIL   91 (211)
Q Consensus        13 ~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   91 (211)
                      +.+||+++|++|+|||||+++|.++.+ ..+.++.+..+. ..+.+++..+.+.+||+||+..+...+..+++++|++++
T Consensus         2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   80 (167)
T 1c1y_A            2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFAL   80 (167)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEE-EEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEE
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEE-EEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence            468999999999999999999999887 455666665543 455667778999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHc-CCeEEEeeccCCCcHHHHHH
Q 028300           92 VYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEH-GSLFLECSAKTRENVEQCFE  170 (211)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~-~~~~~~~Sa~~~~gv~~l~~  170 (211)
                      |||++++.+++.+.. |...+.......++|+++|+||+|+.+.+.+..++...++..+ +.+++++||++|.|++++|+
T Consensus        81 v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  159 (167)
T 1c1y_A           81 VYSITAQSTFNDLQD-LREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFY  159 (167)
T ss_dssp             EEETTCHHHHHTHHH-HHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHH
T ss_pred             EEECCCHHHHHHHHH-HHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEecCCCCCCHHHHHH
Confidence            999999999999888 6666655445578999999999999877777888888888887 78999999999999999999


Q ss_pred             HHHHHHH
Q 028300          171 QLALKIM  177 (211)
Q Consensus       171 ~i~~~~~  177 (211)
                      +|.+.+.
T Consensus       160 ~l~~~i~  166 (167)
T 1c1y_A          160 DLVRQIN  166 (167)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHh
Confidence            9998764

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=100.00  E-value=1.2e-32  Score=201.21  Aligned_cols=172  Identities=55%  Similarity=0.852  Sum_probs=145.2

Q ss_pred             CCCCCCceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhcc
Q 028300            6 GQSNSYDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYR   84 (211)
Q Consensus         6 ~~~~~~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~   84 (211)
                      ......+..++|+|+|++|+|||||+++|++..+ ..+.++.+.++....+.+.+..+.+.+||+||++.+...+..+++
T Consensus        12 ~~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~   91 (213)
T 3cph_A           12 GNGKSYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYR   91 (213)
T ss_dssp             --------CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHT
T ss_pred             CCCCCCCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhc
Confidence            3445567789999999999999999999999887 567778888888788888888899999999999999999999999


Q ss_pred             CCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCc
Q 028300           85 GAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTREN  164 (211)
Q Consensus        85 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~g  164 (211)
                      .+|++++|||++++.+++.+.. |+..+... ...++|+++|+||+|+ ..+.+..++...++..++++++++||+++.|
T Consensus        92 ~~d~ii~v~d~~~~~s~~~~~~-~~~~i~~~-~~~~~piilv~nK~Dl-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  168 (213)
T 3cph_A           92 GAMGIILVYDVTDERTFTNIKQ-WFKTVNEH-ANDEAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDN  168 (213)
T ss_dssp             TCSEEEEEEETTCHHHHHTHHH-HHHHHHHH-TTTCSEEEEEEECTTC-SSCCSCHHHHHHHHHHHTCCEEECBTTTTBS
T ss_pred             cCCEEEEEEECCCHHHHHHHHH-HHHHHHHh-cCCCCCEEEEEECCCC-cccccCHHHHHHHHHHcCCEEEEEeCCCCCC
Confidence            9999999999999999998887 77776654 3457999999999999 4556677778888888899999999999999


Q ss_pred             HHHHHHHHHHHHHhcc
Q 028300          165 VEQCFEQLALKIMEVP  180 (211)
Q Consensus       165 v~~l~~~i~~~~~~~~  180 (211)
                      ++++|++|.+.+.+..
T Consensus       169 i~~l~~~l~~~~~~~~  184 (213)
T 3cph_A          169 VNEIFFTLAKLIQEKI  184 (213)
T ss_dssp             SHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999887654

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=100.00  E-value=1.3e-32  Score=195.49  Aligned_cols=164  Identities=23%  Similarity=0.332  Sum_probs=137.0

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEE
Q 028300           11 YDLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGII   90 (211)
Q Consensus        11 ~~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (211)
                      ....+||+++|++|||||||+++|.++.+..+.++.+..+ ...+.+++..+.+.+||++|++.     ..+++++|+++
T Consensus         4 ~~~~~ki~~vG~~~vGKTsli~~l~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~i   77 (178)
T 2iwr_A            4 SIPELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQY-KKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVI   77 (178)
T ss_dssp             CCCEEEEEEECCGGGCHHHHHHHHHHSCCCCCSSCSSSEE-EEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEE
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHhCCCCCcCCCcceeE-EEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEE
Confidence            4568999999999999999999999999866777777554 46667788889999999999875     45678899999


Q ss_pred             EEEECCChhhHHHHHHHHHHHhhhhcc--CCCccEEEEeecCCCC--CCcccCHHHHHHHHHHc-CCeEEEeeccCCCcH
Q 028300           91 LVYDVTRRETFTNLSDVWAKEVDLYST--NQDCVKMLVGNKVDRD--SERVVSREEGIALAKEH-GSLFLECSAKTRENV  165 (211)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~~p~viv~nK~Dl~--~~~~v~~~~~~~~~~~~-~~~~~~~Sa~~~~gv  165 (211)
                      +|||++++++++.+.. |...+.....  ..++|+++|+||+|+.  ..+.+..++...++... +++++++||++|.|+
T Consensus        78 lv~D~~~~~s~~~~~~-~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  156 (178)
T 2iwr_A           78 FVFSLEDENSFQAVSR-LHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNV  156 (178)
T ss_dssp             EEEETTCHHHHHHHHH-HHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEEEBTTTTBTH
T ss_pred             EEEECcCHHHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEEEeccccCCH
Confidence            9999999999999988 6555543322  3589999999999993  45667788888888776 689999999999999


Q ss_pred             HHHHHHHHHHHHhccc
Q 028300          166 EQCFEQLALKIMEVPS  181 (211)
Q Consensus       166 ~~l~~~i~~~~~~~~~  181 (211)
                      +++|++|.+.+.+...
T Consensus       157 ~~lf~~l~~~~~~~~~  172 (178)
T 2iwr_A          157 DRVFQEVAQKVVTLRK  172 (178)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            9999999998877644

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=8.3e-33  Score=199.65  Aligned_cols=169  Identities=33%  Similarity=0.496  Sum_probs=143.6

Q ss_pred             CCceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcE
Q 028300           10 SYDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQG   88 (211)
Q Consensus        10 ~~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~   88 (211)
                      .....+||+++|++|+|||||+++|.+..+ ..+.++.+..+ ...+.+++..+.+.+||+||+.. ...+..+++.+|+
T Consensus        24 ~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~  101 (196)
T 2atv_A           24 AKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEG  101 (196)
T ss_dssp             ---CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSE
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceE-EEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCE
Confidence            345689999999999999999999999888 45566666554 45567788889999999999887 6678889999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCC-cHHH
Q 028300           89 IILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRE-NVEQ  167 (211)
Q Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~-gv~~  167 (211)
                      +++|||++++++++.+.. |...+.......++|+++|+||+|+.+.+.+..++...++..++++++++||+++. |+++
T Consensus       102 iilv~D~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~~gi~~  180 (196)
T 2atv_A          102 FVLVYDITDRGSFEEVLP-LKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITE  180 (196)
T ss_dssp             EEEEEETTCHHHHHTHHH-HHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHH
T ss_pred             EEEEEECcCHHHHHHHHH-HHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHHHhCCeEEEECCCcCCcCHHH
Confidence            999999999999999987 77776655455789999999999997777788888888998899999999999999 9999


Q ss_pred             HHHHHHHHHHhccc
Q 028300          168 CFEQLALKIMEVPS  181 (211)
Q Consensus       168 l~~~i~~~~~~~~~  181 (211)
                      +|++|.+.+.+.+.
T Consensus       181 l~~~l~~~i~~~~~  194 (196)
T 2atv_A          181 IFYELCREVRRRRM  194 (196)
T ss_dssp             HHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhhcc
Confidence            99999998876543

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=100.00  E-value=1.7e-32  Score=198.67  Aligned_cols=171  Identities=29%  Similarity=0.499  Sum_probs=137.3

Q ss_pred             CCCCceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCC
Q 028300            8 SNSYDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGA   86 (211)
Q Consensus         8 ~~~~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~   86 (211)
                      +......++|+++|++|+|||||+++|.+..+ ..+.++.+..+ ...+..++..+.+.+||+||++.+..++..++.++
T Consensus        14 ~~~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~   92 (201)
T 2q3h_A           14 GGAEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNF-SAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNT   92 (201)
T ss_dssp             ------CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEE-EEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTC
T ss_pred             CCCCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCC
Confidence            34567899999999999999999999998887 55566665444 34567788889999999999999999999999999


Q ss_pred             cEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCC------------CcccCHHHHHHHHHHcCC-e
Q 028300           87 QGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDS------------ERVVSREEGIALAKEHGS-L  153 (211)
Q Consensus        87 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~------------~~~v~~~~~~~~~~~~~~-~  153 (211)
                      |++++|||++++.++.++...|...+...  ..++|+++|+||+|+.+            .+.+..++...++..++. +
T Consensus        93 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  170 (201)
T 2q3h_A           93 DIFLLCFSVVSPSSFQNVSEKWVPEIRCH--CPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAAS  170 (201)
T ss_dssp             SEEEEEEETTCHHHHHHHHHTHHHHHHHH--CSSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSE
T ss_pred             cEEEEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcE
Confidence            99999999999999999975588887765  34899999999999864            245677788888888887 8


Q ss_pred             EEEeeccCCCcHHHHHHHHHHHHHhccc
Q 028300          154 FLECSAKTRENVEQCFEQLALKIMEVPS  181 (211)
Q Consensus       154 ~~~~Sa~~~~gv~~l~~~i~~~~~~~~~  181 (211)
                      |+++||+++.|++++|++|.+.+.+.+.
T Consensus       171 ~~~~Sa~~g~gi~~l~~~l~~~~~~~~~  198 (201)
T 2q3h_A          171 YIECSALTQKNLKEVFDAAIVAGIQYSD  198 (201)
T ss_dssp             EEECCTTTCTTHHHHHHHHHHHHHHHHC
T ss_pred             EEEEecCCCCCHHHHHHHHHHHHhcccc
Confidence            9999999999999999999998876543

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=100.00  E-value=5.8e-32  Score=194.17  Aligned_cols=172  Identities=31%  Similarity=0.515  Sum_probs=132.3

Q ss_pred             CCCCCceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccC
Q 028300            7 QSNSYDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRG   85 (211)
Q Consensus         7 ~~~~~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~   85 (211)
                      .+......++|+++|.+|||||||+++|.+..+ ..+.++.+..+ ...+.+.+..+.+.+||+||+..+...+..+++.
T Consensus        14 ~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~   92 (190)
T 3con_A           14 LYFQGMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT   92 (190)
T ss_dssp             -----CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC-----------CTT
T ss_pred             ccccccceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEE-EEEEEECCEEEEEEEEECCChHHHHHHHHHhhCc
Confidence            344556789999999999999999999998887 44445544433 3556778888999999999999999999999999


Q ss_pred             CcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcH
Q 028300           86 AQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENV  165 (211)
Q Consensus        86 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv  165 (211)
                      +|++++|||+++..++..+.. |...+.......++|+++|+||+|+.. +.+..++...++..++++++++||+++.|+
T Consensus        93 ~d~~i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  170 (190)
T 3con_A           93 GEGFLCVFAINNSKSFADINL-YREQIKRVKDSDDVPMVLVGNKCDLPT-RTVDTKQAHELAKSYGIPFIETSAKTRQGV  170 (190)
T ss_dssp             CSEEEEEEETTCHHHHHHHHH-HHHHHHHHHTCSCCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEECCTTTCTTH
T ss_pred             CCEEEEEEECcCHHHHHHHHH-HHHHHHHHhCCCCCeEEEEEECCcCCc-ccCCHHHHHHHHHHcCCeEEEEeCCCCCCH
Confidence            999999999999999999877 777776654456899999999999865 556778888888889999999999999999


Q ss_pred             HHHHHHHHHHHHhccc
Q 028300          166 EQCFEQLALKIMEVPS  181 (211)
Q Consensus       166 ~~l~~~i~~~~~~~~~  181 (211)
                      +++|++|.+.+.+.+.
T Consensus       171 ~~l~~~l~~~~~~~~~  186 (190)
T 3con_A          171 EDAFYTLVREIRQYRM  186 (190)
T ss_dssp             HHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999998876543

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=100.00  E-value=7.2e-32  Score=195.54  Aligned_cols=167  Identities=30%  Similarity=0.552  Sum_probs=142.3

Q ss_pred             CCCceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCc
Q 028300            9 NSYDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQ   87 (211)
Q Consensus         9 ~~~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d   87 (211)
                      ......+||+++|.+|+|||||+++|.+..+ ..+.++.+..+. ..+.+++..+.+.+||+||++.+...+..+++++|
T Consensus        20 ~m~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d   98 (201)
T 2gco_A           20 HMAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYI-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTD   98 (201)
T ss_dssp             --CCEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCE-EEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCS
T ss_pred             CCcccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEE-EEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCC
Confidence            3446789999999999999999999999887 555666666654 34677888899999999999999999999999999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCC------------cccCHHHHHHHHHHcCC-eE
Q 028300           88 GIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSE------------RVVSREEGIALAKEHGS-LF  154 (211)
Q Consensus        88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~------------~~v~~~~~~~~~~~~~~-~~  154 (211)
                      ++++|||+++++++..+...|...+...  ..++|+++|+||+|+.+.            +.+..++...++...+. ++
T Consensus        99 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  176 (201)
T 2gco_A           99 VILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGY  176 (201)
T ss_dssp             EEEEEEETTCHHHHHHHHHTHHHHHHHH--STTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEE
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEE
Confidence            9999999999999999965588887765  358999999999999765            44677788888888887 89


Q ss_pred             EEeeccCCCcHHHHHHHHHHHHHh
Q 028300          155 LECSAKTRENVEQCFEQLALKIME  178 (211)
Q Consensus       155 ~~~Sa~~~~gv~~l~~~i~~~~~~  178 (211)
                      +++||+++.|++++|++|.+.+.+
T Consensus       177 ~~~SA~~g~gi~~l~~~i~~~~l~  200 (201)
T 2gco_A          177 LECSAKTKEGVREVFEMATRAGLQ  200 (201)
T ss_dssp             EECCTTTCTTHHHHHHHHHHHHHC
T ss_pred             EEeeCCCCCCHHHHHHHHHHHHhc
Confidence            999999999999999999988754

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=100.00  E-value=2.1e-32  Score=195.70  Aligned_cols=165  Identities=26%  Similarity=0.557  Sum_probs=140.2

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEE
Q 028300           11 YDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGI   89 (211)
Q Consensus        11 ~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~   89 (211)
                      ....+||+++|++|+|||||+++|.+..+ ..+.++.+..+. ..+.+++..+.+.+||+||++.+...+..+++++|++
T Consensus         4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~   82 (184)
T 1m7b_A            4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT-ASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV   82 (184)
T ss_dssp             --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred             CceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEE-EEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEE
Confidence            35679999999999999999999999888 556677766553 4566677889999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCC------------cccCHHHHHHHHHHcC-CeEEE
Q 028300           90 ILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSE------------RVVSREEGIALAKEHG-SLFLE  156 (211)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~------------~~v~~~~~~~~~~~~~-~~~~~  156 (211)
                      ++|||++++++++++...|...+..+  ..++|+++|+||+|+.+.            +.+..++...++..++ ++|++
T Consensus        83 i~v~d~~~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e  160 (184)
T 1m7b_A           83 LICFDISRPETLDSVLKKWKGEIQEF--CPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIE  160 (184)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHH--CTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEE
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHH--CCCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEE
Confidence            99999999999999855588877665  358999999999999642            4577788888888887 68999


Q ss_pred             eecc-CCCcHHHHHHHHHHHHHh
Q 028300          157 CSAK-TRENVEQCFEQLALKIME  178 (211)
Q Consensus       157 ~Sa~-~~~gv~~l~~~i~~~~~~  178 (211)
                      +||+ ++.|++++|++|.+.+.+
T Consensus       161 ~Sa~~~~~gi~~l~~~i~~~~l~  183 (184)
T 1m7b_A          161 CSALQSENSVRDIFHVATLACVN  183 (184)
T ss_dssp             CBTTTBHHHHHHHHHHHHHHHHT
T ss_pred             eeecCCCcCHHHHHHHHHHHHhc
Confidence            9999 689999999999998764

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=100.00  E-value=6.3e-32  Score=195.88  Aligned_cols=164  Identities=32%  Similarity=0.579  Sum_probs=141.2

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEE----------------------------
Q 028300           11 YDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKR----------------------------   61 (211)
Q Consensus        11 ~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~----------------------------   61 (211)
                      .+..+||+|+|++|+|||||+++|++..+ ..+.++.+.++....+.+.+..                            
T Consensus         4 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (208)
T 3clv_A            4 KKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQH   83 (208)
T ss_dssp             CCSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC------------------------------
T ss_pred             CCcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccccccccccccccccccccccccccccc
Confidence            35679999999999999999999999988 5677777777777766666544                            


Q ss_pred             ---------EEEEEEeCCChhhhccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCC
Q 028300           62 ---------LKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDR  132 (211)
Q Consensus        62 ---------~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl  132 (211)
                               ..+.+||+||+..+...+..+++.+|++++|||++++.++..+.. |+..+...   .+.|+++|+||+| 
T Consensus        84 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~-~~~~i~~~---~~~piilv~NK~D-  158 (208)
T 3clv_A           84 NNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKT-WVNQLKIS---SNYIIILVANKID-  158 (208)
T ss_dssp             -CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHH-HHHHHHHH---SCCEEEEEEECTT-
T ss_pred             ccccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHH-HHHHHHhh---CCCcEEEEEECCC-
Confidence                     889999999999999999999999999999999999999999887 77776654   2399999999999 


Q ss_pred             CCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHHHHHHHHHHhc
Q 028300          133 DSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIMEV  179 (211)
Q Consensus       133 ~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~~~~~  179 (211)
                      ...+.+..++...++...+++++++||+++.|++++|++|.+.+.++
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~  205 (208)
T 3clv_A          159 KNKFQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIYKN  205 (208)
T ss_dssp             CC-CCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHHH
T ss_pred             cccccCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence            55567788888999999999999999999999999999999987654

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=100.00  E-value=6.2e-32  Score=193.13  Aligned_cols=167  Identities=29%  Similarity=0.541  Sum_probs=142.5

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEE
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGII   90 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (211)
                      ...++|+++|++|+|||||+++|.++.+ ..+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+|+++
T Consensus         3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   81 (186)
T 1mh1_A            3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSL   81 (186)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEE-EEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCccccee-EEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEE
Confidence            4689999999999999999999998887 55556665444 445677888999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCC------------cccCHHHHHHHHHHcCC-eEEEe
Q 028300           91 LVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSE------------RVVSREEGIALAKEHGS-LFLEC  157 (211)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~------------~~v~~~~~~~~~~~~~~-~~~~~  157 (211)
                      +|||++++.++.++...|...+...  ..++|+++|+||+|+.+.            +.+..++...++...+. +++++
T Consensus        82 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  159 (186)
T 1mh1_A           82 ICFSLVSPASFENVRAKWYPEVRHH--CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLEC  159 (186)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHH--STTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred             EEEECCChhhHHHHHHHHHHHHHHh--CCCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEe
Confidence            9999999999999985588877765  348999999999998653            45677778888888887 99999


Q ss_pred             eccCCCcHHHHHHHHHHHHHhccc
Q 028300          158 SAKTRENVEQCFEQLALKIMEVPS  181 (211)
Q Consensus       158 Sa~~~~gv~~l~~~i~~~~~~~~~  181 (211)
                      ||++|.|++++|++|.+.+.+...
T Consensus       160 Sa~~g~gi~~l~~~l~~~~~~~~~  183 (186)
T 1mh1_A          160 SALTQRGLKTVFDEAIRAVLCPPP  183 (186)
T ss_dssp             CTTTCTTHHHHHHHHHHHHSCCCC
T ss_pred             cCCCccCHHHHHHHHHHHHhcccc
Confidence            999999999999999998876543

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=100.00  E-value=1.5e-32  Score=195.65  Aligned_cols=169  Identities=36%  Similarity=0.610  Sum_probs=129.8

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEEC-CEEEEEEEEeCCChhhhccchhhhccCCcE
Q 028300           11 YDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVA-GKRLKLTIWDTAGQERFRTLTSSYYRGAQG   88 (211)
Q Consensus        11 ~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~   88 (211)
                      ....++|+++|++|+|||||+++|.+..+ ..+.++.+.++....+.+. +....+.+||+||++.+...+..+++.+|+
T Consensus         5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   84 (182)
T 1ky3_A            5 KKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADC   84 (182)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCE
T ss_pred             cCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCE
Confidence            45689999999999999999999999887 5667777777777777666 556889999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHhhhhcc---CCCccEEEEeecCCCCC-CcccCHHHHHHHHH-HcCCeEEEeeccCCC
Q 028300           89 IILVYDVTRRETFTNLSDVWAKEVDLYST---NQDCVKMLVGNKVDRDS-ERVVSREEGIALAK-EHGSLFLECSAKTRE  163 (211)
Q Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~~~p~viv~nK~Dl~~-~~~v~~~~~~~~~~-~~~~~~~~~Sa~~~~  163 (211)
                      +++|||++++.+++.+.. |...+.....   ..++|+++|+||+|+.. .+.+..++...++. ..+++++++||+++.
T Consensus        85 ~i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~  163 (182)
T 1ky3_A           85 CVLVYDVTNASSFENIKS-WRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAI  163 (182)
T ss_dssp             EEEEEETTCHHHHHTHHH-HHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTB
T ss_pred             EEEEEECCChHHHHHHHH-HHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeEEEEecCCCC
Confidence            999999999999999887 7666654422   36889999999999953 34566777777777 466889999999999


Q ss_pred             cHHHHHHHHHHHHHhcc
Q 028300          164 NVEQCFEQLALKIMEVP  180 (211)
Q Consensus       164 gv~~l~~~i~~~~~~~~  180 (211)
                      |++++|++|.+.+.+++
T Consensus       164 gi~~l~~~l~~~~~~~~  180 (182)
T 1ky3_A          164 NVDTAFEEIARSALQQN  180 (182)
T ss_dssp             SHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHhh
Confidence            99999999999887653

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=100.00  E-value=2.2e-32  Score=198.80  Aligned_cols=166  Identities=26%  Similarity=0.554  Sum_probs=139.9

Q ss_pred             CCceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcE
Q 028300           10 SYDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQG   88 (211)
Q Consensus        10 ~~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~   88 (211)
                      .....+||+++|++|||||||+++|.+..+ ..+.++.+..+ ...+.+++..+.+.+||+||++.+..++..+++++|+
T Consensus        24 ~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~  102 (205)
T 1gwn_A           24 NQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDA  102 (205)
T ss_dssp             ---CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred             ccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeE-EEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCE
Confidence            346789999999999999999999999988 45567776655 3455667778999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCC------------cccCHHHHHHHHHHcC-CeEE
Q 028300           89 IILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSE------------RVVSREEGIALAKEHG-SLFL  155 (211)
Q Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~------------~~v~~~~~~~~~~~~~-~~~~  155 (211)
                      +|+|||++++.+++++...|...+...  ..++|+++|+||+|+.+.            +.+..++...++..++ ++|+
T Consensus       103 ~ilv~D~~~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  180 (205)
T 1gwn_A          103 VLICFDISRPETLDSVLKKWKGEIQEF--CPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYI  180 (205)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHH--CTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEE
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHH--CCCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCCEEE
Confidence            999999999999999854488877665  358999999999999642            4577788888888887 6899


Q ss_pred             Eeecc-CCCcHHHHHHHHHHHHHh
Q 028300          156 ECSAK-TRENVEQCFEQLALKIME  178 (211)
Q Consensus       156 ~~Sa~-~~~gv~~l~~~i~~~~~~  178 (211)
                      ++||+ ++.|++++|++|.+.+.+
T Consensus       181 e~SAk~~~~gv~~lf~~l~~~~l~  204 (205)
T 1gwn_A          181 ECSALQSENSVRDIFHVATLACVN  204 (205)
T ss_dssp             ECCTTTCHHHHHHHHHHHHHHHHH
T ss_pred             EeeeccCCcCHHHHHHHHHHHHhh
Confidence            99999 689999999999998764

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=100.00  E-value=1.7e-31  Score=187.15  Aligned_cols=162  Identities=31%  Similarity=0.578  Sum_probs=138.5

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEEE
Q 028300           14 SFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILV   92 (211)
Q Consensus        14 ~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (211)
                      .++|+++|++|+|||||+++|.+..+ ..+.++.+..+ ...+...+..+.+.+||+||+.++...+..++..+|++++|
T Consensus         3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   81 (166)
T 2ce2_X            3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV   81 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEE
T ss_pred             eeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEE-EEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEE
Confidence            68999999999999999999999887 44445554433 45567788889999999999999888889999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHHHHH
Q 028300           93 YDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQL  172 (211)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i  172 (211)
                      ||+++..++..+.. |...+.......++|+++|+||+|+.+ ..+...+...++..++++++++||+++.|++++|++|
T Consensus        82 ~d~~~~~~~~~~~~-~~~~i~~~~~~~~~p~iiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  159 (166)
T 2ce2_X           82 FAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKSDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL  159 (166)
T ss_dssp             EETTCHHHHHHHHH-HHHHHHHHHTCSCCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEEECTTTCTTHHHHHHHH
T ss_pred             EECCCHHHHHHHHH-HHHHHHHhcCCCCCcEEEEEEchhhhh-cccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Confidence            99999999999877 777776654456899999999999866 4566777888888899999999999999999999999


Q ss_pred             HHHHHh
Q 028300          173 ALKIME  178 (211)
Q Consensus       173 ~~~~~~  178 (211)
                      .+.+.+
T Consensus       160 ~~~~~~  165 (166)
T 2ce2_X          160 VREIRQ  165 (166)
T ss_dssp             HHHHHT
T ss_pred             HHHHHh
Confidence            998754

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=100.00  E-value=3.9e-33  Score=202.84  Aligned_cols=170  Identities=25%  Similarity=0.387  Sum_probs=111.6

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHhhC--CC-CCCCCccceeeEEEEEEECCE--EEEEEEEeCCChhhhccchhhhccC
Q 028300           11 YDLSFKILLIGDSGVGKSSLLVSFISS--SV-DDLSPTIGVDFKIKLLTVAGK--RLKLTIWDTAGQERFRTLTSSYYRG   85 (211)
Q Consensus        11 ~~~~~~I~v~G~~~~GKssli~~l~~~--~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~l~D~~g~~~~~~~~~~~~~~   85 (211)
                      ....++|+|+|++|+|||||+++|.+.  .+ ..+.++.+.++....+.+.+.  .+.+.+||+||+..+...+..++++
T Consensus        17 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~   96 (208)
T 2yc2_C           17 ATLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNG   96 (208)
T ss_dssp             EEEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCC
T ss_pred             cccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhh
Confidence            367899999999999999999999988  66 466677776676677777776  8899999999999999999999999


Q ss_pred             CcEEEEEEECCChhhHHHHHHHHHHHhhhhcc--CCCccEEEEeecCCCCC-CcccCHHHHHHHHHHcCCeEEEeeccC-
Q 028300           86 AQGIILVYDVTRRETFTNLSDVWAKEVDLYST--NQDCVKMLVGNKVDRDS-ERVVSREEGIALAKEHGSLFLECSAKT-  161 (211)
Q Consensus        86 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~~p~viv~nK~Dl~~-~~~v~~~~~~~~~~~~~~~~~~~Sa~~-  161 (211)
                      +|++|+|||++++.+++.+.. |+..+.....  ..++|+++|+||+|+.+ .+.+..++...++..++++++++||++ 
T Consensus        97 ~d~~i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~  175 (208)
T 2yc2_C           97 VYYAILVFDVSSMESFESCKA-WFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPP  175 (208)
T ss_dssp             CCEEEEEEETTCHHHHHHHHH-HHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTTCEEEECCC---
T ss_pred             CcEEEEEEECCCHHHHHHHHH-HHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCCEEEEeccCCC
Confidence            999999999999999999987 8887776522  26899999999999987 677888888999999999999999999 


Q ss_pred             CCcHHHHHHHHHHHHHhccc
Q 028300          162 RENVEQCFEQLALKIMEVPS  181 (211)
Q Consensus       162 ~~gv~~l~~~i~~~~~~~~~  181 (211)
                      +.|++++|++|.+.+.+...
T Consensus       176 ~~gi~~l~~~i~~~~~~~~~  195 (208)
T 2yc2_C          176 GKDADAPFLSIATTFYRNYE  195 (208)
T ss_dssp             ----CHHHHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHHHHHHH
Confidence            99999999999998876543

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=100.00  E-value=5.4e-32  Score=198.07  Aligned_cols=166  Identities=33%  Similarity=0.609  Sum_probs=123.9

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEE
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGII   90 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (211)
                      ...+||+++|++|+|||||+++|.+..+ ..+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++++|+++
T Consensus        32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i  110 (214)
T 2j1l_A           32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERY-MVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLL  110 (214)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEE-EEEEEETTEEEEEEEEEC---------------CEEEEE
T ss_pred             cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEE
Confidence            4679999999999999999999998887 44555554443 455677888899999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCc------------ccCHHHHHHHHHHcCC-eEEEe
Q 028300           91 LVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSER------------VVSREEGIALAKEHGS-LFLEC  157 (211)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~------------~v~~~~~~~~~~~~~~-~~~~~  157 (211)
                      +|||++++.+++.+...|...+...  ..++|+++|+||+|+....            .+..++...++..+++ +|+++
T Consensus       111 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  188 (214)
T 2j1l_A          111 LCFDVTSPNSFDNIFNRWYPEVNHF--CKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLEC  188 (214)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHH--CSSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEe
Confidence            9999999999999975588887765  3689999999999996543            5667778888888887 89999


Q ss_pred             eccCCCcHHHHHHHHHHHHHhcc
Q 028300          158 SAKTRENVEQCFEQLALKIMEVP  180 (211)
Q Consensus       158 Sa~~~~gv~~l~~~i~~~~~~~~  180 (211)
                      ||++|.|++++|++|.+.+.+.+
T Consensus       189 SA~~g~gi~el~~~l~~~~~~~~  211 (214)
T 2j1l_A          189 SARLHDNVHAVFQEAAEVALSSR  211 (214)
T ss_dssp             BTTTTBSHHHHHHHHHHHHHHC-
T ss_pred             cCCCCCCHHHHHHHHHHHHHHhh
Confidence            99999999999999999988664

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=100.00  E-value=1.6e-32  Score=201.31  Aligned_cols=174  Identities=32%  Similarity=0.493  Sum_probs=143.9

Q ss_pred             CCCceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECC-EEEEEEEEeCCChhhhccchhhhccCC
Q 028300            9 NSYDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAG-KRLKLTIWDTAGQERFRTLTSSYYRGA   86 (211)
Q Consensus         9 ~~~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~l~D~~g~~~~~~~~~~~~~~~   86 (211)
                      ......+||+|+|.+|||||||+++|++..+ ..+.++.+.......+.... ..+.+.+||+||+..+...+..++..+
T Consensus         6 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   85 (218)
T 4djt_A            6 ERRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGA   85 (218)
T ss_dssp             ----CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTC
T ss_pred             ccccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcC
Confidence            3446789999999999999999999998887 55567777776666655543 448899999999999999999999999


Q ss_pred             cEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHH
Q 028300           87 QGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVE  166 (211)
Q Consensus        87 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~  166 (211)
                      |++|+|||+++..+++++.. |...+... ...++|+++|+||+|+.+.+.+...+...++...+++++++||+++.|++
T Consensus        86 d~~i~v~d~~~~~s~~~~~~-~~~~~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~  163 (218)
T 4djt_A           86 SGAILFFDVTSRITCQNLAR-WVKEFQAV-VGNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFG  163 (218)
T ss_dssp             SEEEEEEETTCHHHHHTHHH-HHHHHHHH-HCSSSCEEEEEECTTCC----CCHHHHHHHTTTCCCEEEEEBTTTTBTTT
T ss_pred             CEEEEEEeCCCHHHHHHHHH-HHHHHHHh-cCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCcEEEEecCCCCCHH
Confidence            99999999999999999887 87777655 34568999999999998777788888888888889999999999999999


Q ss_pred             HHHHHHHHHHHhccchhc
Q 028300          167 QCFEQLALKIMEVPSLLE  184 (211)
Q Consensus       167 ~l~~~i~~~~~~~~~~~~  184 (211)
                      ++|++|.+.+.+......
T Consensus       164 ~l~~~l~~~~~~~~~~~~  181 (218)
T 4djt_A          164 LPFLHLARIFTGRPDLIF  181 (218)
T ss_dssp             HHHHHHHHHHHCCTTCCB
T ss_pred             HHHHHHHHHHhccccccc
Confidence            999999999988765543

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=4.9e-32  Score=191.15  Aligned_cols=165  Identities=28%  Similarity=0.441  Sum_probs=137.0

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEE
Q 028300           13 LSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIIL   91 (211)
Q Consensus        13 ~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   91 (211)
                      ..++|+++|++|+|||||+++|.++.+ ..+.++.+..+. ..+..++..+.+.+||+||+..+...+..+++.+|++++
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~   80 (172)
T 2erx_A            2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYR-QVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFIL   80 (172)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEE-EEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEE-EEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEE
Confidence            478999999999999999999999887 455566554443 345667788899999999999988888999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHhhhh-ccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHHH
Q 028300           92 VYDVTRRETFTNLSDVWAKEVDLY-STNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFE  170 (211)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~  170 (211)
                      |||++++.+++.+.. |...+... ....++|+++|+||+|+.+.+.+...+...++..++++++++||+++.|++++|+
T Consensus        81 v~d~~~~~~~~~~~~-~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  159 (172)
T 2erx_A           81 VYSITSRQSLEELKP-IYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQ  159 (172)
T ss_dssp             EEETTCHHHHHTTHH-HHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHH
T ss_pred             EEECcCHHHHHHHHH-HHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEecCCCCcCHHHHHH
Confidence            999999999988887 55554433 1235799999999999977777777888888888899999999999999999999


Q ss_pred             HHHHHHHhc
Q 028300          171 QLALKIMEV  179 (211)
Q Consensus       171 ~i~~~~~~~  179 (211)
                      +|.+.+.+.
T Consensus       160 ~l~~~~~~~  168 (172)
T 2erx_A          160 ELLNLEKRR  168 (172)
T ss_dssp             HHHHTCCSS
T ss_pred             HHHHHHhhh
Confidence            999866543

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=2.1e-31  Score=193.96  Aligned_cols=167  Identities=30%  Similarity=0.537  Sum_probs=138.0

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEE
Q 028300           11 YDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGI   89 (211)
Q Consensus        11 ~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~   89 (211)
                      ....+||+++|.+|+|||||+++|.+..+ ..+.++.+..+. ..+..++..+.+.+||+||++.+...+..+++++|++
T Consensus        22 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~  100 (207)
T 2fv8_A           22 SMIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVI  100 (207)
T ss_dssp             GSEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEE-EEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEE
T ss_pred             cccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEE-EEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEE
Confidence            35678999999999999999999999887 445566665554 3366788889999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCC------------cccCHHHHHHHHHHcCC-eEEE
Q 028300           90 ILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSE------------RVVSREEGIALAKEHGS-LFLE  156 (211)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~------------~~v~~~~~~~~~~~~~~-~~~~  156 (211)
                      ++|||+++++++..+...|...+...  ..++|+++|+||+|+.+.            +.+..++...++...+. ++++
T Consensus       101 i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  178 (207)
T 2fv8_A          101 LMCFSVDSPDSLENIPEKWVPEVKHF--CPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLE  178 (207)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHH--STTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEE
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEE
Confidence            99999999999999955588887764  358999999999999654            34667777888888887 8999


Q ss_pred             eeccCCCcHHHHHHHHHHHHHhcc
Q 028300          157 CSAKTRENVEQCFEQLALKIMEVP  180 (211)
Q Consensus       157 ~Sa~~~~gv~~l~~~i~~~~~~~~  180 (211)
                      +||+++.|++++|++|.+.+....
T Consensus       179 ~SA~~g~gi~el~~~l~~~i~~~~  202 (207)
T 2fv8_A          179 CSAKTKEGVREVFETATRAALQKR  202 (207)
T ss_dssp             CCTTTCTTHHHHHHHHHHHHHSCC
T ss_pred             eeCCCCCCHHHHHHHHHHHHHHHh
Confidence            999999999999999999887653

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=100.00  E-value=2.4e-31  Score=191.49  Aligned_cols=168  Identities=27%  Similarity=0.367  Sum_probs=135.0

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhhCC--CCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhh-hccchhhhccCCcE
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFISSS--VDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER-FRTLTSSYYRGAQG   88 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-~~~~~~~~~~~~d~   88 (211)
                      ...+||+++|.+|||||||+++|.+..  +....++.+.++....+.+++..+.+.+||++|... +..+...+++.+|+
T Consensus         4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~   83 (192)
T 2cjw_A            4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDA   83 (192)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCSE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCCE
Confidence            356999999999999999999999643  344444566666667778888899999999999765 45566778889999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHH
Q 028300           89 IILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQC  168 (211)
Q Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l  168 (211)
                      +++|||+++.++|+.+.. |...+.......++|+++|+||+|+...+.+..++...++..++++|+++||++|.||+++
T Consensus        84 ~i~v~dv~~~~s~~~~~~-~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~SA~~g~~v~~l  162 (192)
T 2cjw_A           84 YLIVYSITDRASFEKASE-LRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKEL  162 (192)
T ss_dssp             EEEEEETTCHHHHHHHHH-HHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHH
T ss_pred             EEEEEECCCHHHHHHHHH-HHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHHHHHHhCCceEEeccccCCCHHHH
Confidence            999999999999999887 6665554323458999999999999766677777777788888899999999999999999


Q ss_pred             HHHHHHHHHhcc
Q 028300          169 FEQLALKIMEVP  180 (211)
Q Consensus       169 ~~~i~~~~~~~~  180 (211)
                      |++|.+.+....
T Consensus       163 f~~l~~~~~~~~  174 (192)
T 2cjw_A          163 FEGIVRQVRLRR  174 (192)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhc
Confidence            999999886543

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=100.00  E-value=1.4e-32  Score=195.88  Aligned_cols=166  Identities=33%  Similarity=0.597  Sum_probs=125.6

Q ss_pred             CCceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcE
Q 028300           10 SYDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQG   88 (211)
Q Consensus        10 ~~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~   88 (211)
                      +....+||+++|++|+|||||++++....+ ..+.++.+..+. ..+.+.+..+.+.+||+||++++...+..+++++|+
T Consensus         4 ~~~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   82 (182)
T 3bwd_D            4 SASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFS-ANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADV   82 (182)
T ss_dssp             ---CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CB-CCCC-------CEEECCCC-CTTTTTGGGGGTTCSE
T ss_pred             CCCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEE-EEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCE
Confidence            345679999999999999999999998887 445555553332 123345567788899999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcc----------cCHHHHHHHHHHcCC-eEEEe
Q 028300           89 IILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERV----------VSREEGIALAKEHGS-LFLEC  157 (211)
Q Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~  157 (211)
                      +++|||++++.+++.+...|...+...  ..++|+++|+||+|+.+.+.          +..++...++..++. +|+++
T Consensus        83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  160 (182)
T 3bwd_D           83 FILAFSLISKASYENVSKKWIPELKHY--APGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIEC  160 (182)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHH--CTTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEEC
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEEEE
Confidence            999999999999999985588888765  34899999999999866544          366778888888886 89999


Q ss_pred             eccCCCcHHHHHHHHHHHHHh
Q 028300          158 SAKTRENVEQCFEQLALKIME  178 (211)
Q Consensus       158 Sa~~~~gv~~l~~~i~~~~~~  178 (211)
                      ||+++.|++++|++|.+.+..
T Consensus       161 Sa~~~~gi~~l~~~l~~~i~~  181 (182)
T 3bwd_D          161 SSKSQENVKGVFDAAIRVVLQ  181 (182)
T ss_dssp             CTTTCTTHHHHHHHHHHHHSC
T ss_pred             ECCCCCCHHHHHHHHHHHHhc
Confidence            999999999999999987753

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=100.00  E-value=7.7e-32  Score=190.16  Aligned_cols=161  Identities=21%  Similarity=0.332  Sum_probs=127.8

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEE
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIIL   91 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   91 (211)
                      ...++|+++|++|+|||||+++|.++.+..+.++.+....  .+.+.  ...+.+||+||+..+...+..+++.+|++++
T Consensus         5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~--~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~   80 (171)
T 1upt_A            5 TREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVE--TVTYK--NLKFQVWDLGGLTSIRPYWRCYYSNTDAVIY   80 (171)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEEEE--EEEET--TEEEEEEEECCCGGGGGGGGGGCTTCSEEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCCCcCCcCccceE--EEEEC--CEEEEEEECCCChhhhHHHHHHhccCCEEEE
Confidence            4579999999999999999999999988777777765443  33443  5789999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHH-----HHHcCCeEEEeeccCCCcHH
Q 028300           92 VYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIAL-----AKEHGSLFLECSAKTRENVE  166 (211)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~-----~~~~~~~~~~~Sa~~~~gv~  166 (211)
                      |||+++++++......+...+... ...++|+++|+||+|+.+...  ..+....     +...+++++++||+++.|++
T Consensus        81 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  157 (171)
T 1upt_A           81 VVDSCDRDRIGISKSELVAMLEEE-ELRKAILVVFANKQDMEQAMT--SSEMANSLGLPALKDRKWQIFKTSATKGTGLD  157 (171)
T ss_dssp             EEETTCCTTHHHHHHHHHHHHTCG-GGTTCEEEEEEECTTSTTCCC--HHHHHHHHTGGGCTTSCEEEEECCTTTCTTHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHhch-hhCCCEEEEEEECCCCcCCCC--HHHHHHHhCchhccCCceEEEECcCCCCcCHH
Confidence            999999999999887444444322 346899999999999966432  2222211     22345689999999999999


Q ss_pred             HHHHHHHHHHHhc
Q 028300          167 QCFEQLALKIMEV  179 (211)
Q Consensus       167 ~l~~~i~~~~~~~  179 (211)
                      ++|++|.+.+.+.
T Consensus       158 ~l~~~l~~~i~~~  170 (171)
T 1upt_A          158 EAMEWLVETLKSR  170 (171)
T ss_dssp             HHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHhhc
Confidence            9999999988654

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=100.00  E-value=4.5e-32  Score=199.36  Aligned_cols=170  Identities=31%  Similarity=0.562  Sum_probs=147.2

Q ss_pred             CCCCceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCC
Q 028300            8 SNSYDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGA   86 (211)
Q Consensus         8 ~~~~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~   86 (211)
                      .......+||+++|.+|||||||+++|+.+.+ ..+.++.+.++....+.+.+..+.+.+||+||++.+...+..+++++
T Consensus         9 ~~~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~   88 (221)
T 3gj0_A            9 QGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQA   88 (221)
T ss_dssp             TTCCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTC
T ss_pred             CCCcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcC
Confidence            34556789999999999999999999777766 66778889999988889999999999999999999999999999999


Q ss_pred             cEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHH
Q 028300           87 QGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVE  166 (211)
Q Consensus        87 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~  166 (211)
                      |++++|||+++..++..+.. |...+...  ..++|+++|+||+|+.+.....  +...++...+++|+++||+++.|++
T Consensus        89 ~~~i~v~d~~~~~s~~~~~~-~~~~~~~~--~~~~p~ilv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~Sa~~~~gi~  163 (221)
T 3gj0_A           89 QCAIIMFDVTSRVTYKNVPN-WHRDLVRV--CENIPIVLCGNKVDIKDRKVKA--KSIVFHRKKNLQYYDISAKSNYNFE  163 (221)
T ss_dssp             CEEEEEEETTCHHHHHTHHH-HHHHHHHH--STTCCEEEEEECTTSSSCSSCG--GGCCHHHHHTCEEEECBGGGTBTTT
T ss_pred             CEEEEEEECCCHHHHHHHHH-HHHHHHHh--CCCCCEEEEEECCccccccccH--HHHHHHHHcCCEEEEEeCCCCCCHH
Confidence            99999999999999999987 87777665  3589999999999996544322  4456677788999999999999999


Q ss_pred             HHHHHHHHHHHhccch
Q 028300          167 QCFEQLALKIMEVPSL  182 (211)
Q Consensus       167 ~l~~~i~~~~~~~~~~  182 (211)
                      ++|++|.+.+......
T Consensus       164 ~l~~~l~~~l~~~~~~  179 (221)
T 3gj0_A          164 KPFLWLARKLIGDPNL  179 (221)
T ss_dssp             HHHHHHHHHHHTCTTC
T ss_pred             HHHHHHHHHHHhCccc
Confidence            9999999999877654

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=100.00  E-value=5.4e-34  Score=206.39  Aligned_cols=168  Identities=53%  Similarity=0.864  Sum_probs=137.4

Q ss_pred             CCceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcE
Q 028300           10 SYDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQG   88 (211)
Q Consensus        10 ~~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~   88 (211)
                      ..+..+||+|+|.+|||||||+++|.+..+ ..+.++.+.++....+.+.+..+.+.+||+||++.+...+..+++++|+
T Consensus        29 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~  108 (199)
T 3l0i_B           29 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHG  108 (199)
T ss_dssp             CCSEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSE
T ss_pred             ccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCE
Confidence            346789999999999999999999998877 4556677778888888888889999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHH
Q 028300           89 IILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQC  168 (211)
Q Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l  168 (211)
                      +++|||++++.+++.+.. |+..+... ...++|+++|+||+|+.+.+.+...+...++..++++++++||+++.|++++
T Consensus       109 ~i~v~d~~~~~s~~~~~~-~~~~i~~~-~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gv~~l  186 (199)
T 3l0i_B          109 IIVVYDVTDQESFNNVKQ-WLQEIDRY-ASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQS  186 (199)
T ss_dssp             EEECC-CCCSHHHHHHHH-HHHHHHSC-C-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTTCCBCCCCC---HHHHHH
T ss_pred             EEEEEECCCHHHHHHHHH-HHHHHHHh-ccCCCCEEEEEECccCCccccCCHHHHHHHHHHcCCeEEEEECCCCCCHHHH
Confidence            999999999999999988 87777654 3458999999999999877767666677888888999999999999999999


Q ss_pred             HHHHHHHHHhc
Q 028300          169 FEQLALKIMEV  179 (211)
Q Consensus       169 ~~~i~~~~~~~  179 (211)
                      |++|.+.+.+.
T Consensus       187 ~~~l~~~l~~~  197 (199)
T 3l0i_B          187 FMTMAAEIKKR  197 (199)
T ss_dssp             HHHHTTTTTTT
T ss_pred             HHHHHHHHHHh
Confidence            99998876543

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=99.98  E-value=1.9e-31  Score=193.73  Aligned_cols=163  Identities=28%  Similarity=0.515  Sum_probs=135.8

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEE
Q 028300           11 YDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGI   89 (211)
Q Consensus        11 ~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~   89 (211)
                      ....+||+++|.+|+|||||+++|..+.+ ..+.++.+. .....+.+++..+.+.+||+||++.+...+..+++++|++
T Consensus        27 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~  105 (204)
T 4gzl_A           27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFD-NYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVF  105 (204)
T ss_dssp             ---CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEE-EEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred             cCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeecc-eeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEE
Confidence            36789999999999999999999998887 455555543 3445566777888999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcc------------cCHHHHHHHHHHcCC-eEEE
Q 028300           90 ILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERV------------VSREEGIALAKEHGS-LFLE  156 (211)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~------------v~~~~~~~~~~~~~~-~~~~  156 (211)
                      ++|||++++.+++++...|...+...  ..++|+++|+||+|+.....            +...+...++...+. ++++
T Consensus       106 i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  183 (204)
T 4gzl_A          106 LICFSLVSPASFENVRAKWYPEVRHH--CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLE  183 (204)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHH--CSSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEE
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEEE
Confidence            99999999999999985588888766  36899999999999865433            667778888888886 5999


Q ss_pred             eeccCCCcHHHHHHHHHHHH
Q 028300          157 CSAKTRENVEQCFEQLALKI  176 (211)
Q Consensus       157 ~Sa~~~~gv~~l~~~i~~~~  176 (211)
                      +||++|.|++++|++|.+.+
T Consensus       184 ~SA~~g~gi~~l~~~l~~~~  203 (204)
T 4gzl_A          184 CSALTQRGLKTVFDEAIRAV  203 (204)
T ss_dssp             CCTTTCTTHHHHHHHHHHTT
T ss_pred             eeCCCCCCHHHHHHHHHHHh
Confidence            99999999999999998754

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=99.98  E-value=6.1e-32  Score=194.94  Aligned_cols=168  Identities=22%  Similarity=0.278  Sum_probs=134.6

Q ss_pred             CCCceeeEEEEEcCCCCcHHHHHHHHhhCCCCCC-----------CCccceeeEEEEE-EECCEEEEEEEEeCCChhhhc
Q 028300            9 NSYDLSFKILLIGDSGVGKSSLLVSFISSSVDDL-----------SPTIGVDFKIKLL-TVAGKRLKLTIWDTAGQERFR   76 (211)
Q Consensus         9 ~~~~~~~~I~v~G~~~~GKssli~~l~~~~~~~~-----------~~~~~~~~~~~~~-~~~~~~~~~~l~D~~g~~~~~   76 (211)
                      ...+..+||+++|++|||||||++.+.+.....+           .++.+.++....+ .+++..+.+.+||+||++.+.
T Consensus         9 ~~~~~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~   88 (198)
T 3t1o_A            9 ANREINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYN   88 (198)
T ss_dssp             TTTEEEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCS
T ss_pred             hccccccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHH
Confidence            4557889999999999999999976665443332           2344444443333 445678899999999999999


Q ss_pred             cchhhhccCCcEEEEEEECC------ChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHc
Q 028300           77 TLTSSYYRGAQGIILVYDVT------RRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEH  150 (211)
Q Consensus        77 ~~~~~~~~~~d~~i~v~d~~------~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~  150 (211)
                      ..+..+++++|++|+|||++      +.+++..+.. |+..+..  ...++|+++|+||+|+.+.  +..+++..++..+
T Consensus        89 ~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~-~l~~~~~--~~~~~piilv~NK~Dl~~~--~~~~~~~~~~~~~  163 (198)
T 3t1o_A           89 ASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRE-NLAEYGL--TLDDVPIVIQVNKRDLPDA--LPVEMVRAVVDPE  163 (198)
T ss_dssp             HHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHH-HHHHTTC--CTTSSCEEEEEECTTSTTC--CCHHHHHHHHCTT
T ss_pred             HHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHH-HHHhhcc--ccCCCCEEEEEEchhcccc--cCHHHHHHHHHhc
Confidence            99999999999999999999      5566777766 6666632  3578999999999999654  6778888888888


Q ss_pred             CC-eEEEeeccCCCcHHHHHHHHHHHHHhccc
Q 028300          151 GS-LFLECSAKTRENVEQCFEQLALKIMEVPS  181 (211)
Q Consensus       151 ~~-~~~~~Sa~~~~gv~~l~~~i~~~~~~~~~  181 (211)
                      ++ +++++||+++.|++++|++|.+.+.+...
T Consensus       164 ~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~~~  195 (198)
T 3t1o_A          164 GKFPVLEAVATEGKGVFETLKEVSRLVLARVA  195 (198)
T ss_dssp             CCSCEEECBGGGTBTHHHHHHHHHHHHHHHHC
T ss_pred             CCceEEEEecCCCcCHHHHHHHHHHHHHHHhh
Confidence            98 99999999999999999999998877543

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=99.98  E-value=8.6e-32  Score=194.53  Aligned_cols=171  Identities=14%  Similarity=0.269  Sum_probs=127.7

Q ss_pred             CCCCCCceeeEEEEEcCCCCcHHHHHHHHhhCCCC--CCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhc
Q 028300            6 GQSNSYDLSFKILLIGDSGVGKSSLLVSFISSSVD--DLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYY   83 (211)
Q Consensus         6 ~~~~~~~~~~~I~v~G~~~~GKssli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~   83 (211)
                      ++........+|+|+|.+|||||||+++|.+..+.  .+.++.+.....  +  ....+.+.+||+||++.+...+..++
T Consensus         9 ~~~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~~--~--~~~~~~~~i~Dt~G~~~~~~~~~~~~   84 (199)
T 4bas_A            9 HHMGQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVET--F--EKGRVAFTVFDMGGAKKFRGLWETYY   84 (199)
T ss_dssp             -------CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEEE--E--EETTEEEEEEEECCSGGGGGGGGGGC
T ss_pred             ccccCCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEEE--E--EeCCEEEEEEECCCCHhHHHHHHHHH
Confidence            35567788999999999999999999999999884  457777755442  2  34557899999999999999999999


Q ss_pred             cCCcEEEEEEECCChhhHHHHHHHHHHHhhhhcc------CCCccEEEEeecCCCCCCcccC---HHHHHHH-HHHcCCe
Q 028300           84 RGAQGIILVYDVTRRETFTNLSDVWAKEVDLYST------NQDCVKMLVGNKVDRDSERVVS---REEGIAL-AKEHGSL  153 (211)
Q Consensus        84 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~------~~~~p~viv~nK~Dl~~~~~v~---~~~~~~~-~~~~~~~  153 (211)
                      +++|++|+|||+++.+++..+...+...+.....      ..++|+++|+||+|+.......   ....... +...+++
T Consensus        85 ~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  164 (199)
T 4bas_A           85 DNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLMGDHPFV  164 (199)
T ss_dssp             TTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHTTSCEE
T ss_pred             hcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhhccCCeeE
Confidence            9999999999999999999998844444433211      1389999999999997653221   1111111 1346778


Q ss_pred             EEEeeccCCCcHHHHHHHHHHHHHhcc
Q 028300          154 FLECSAKTRENVEQCFEQLALKIMEVP  180 (211)
Q Consensus       154 ~~~~Sa~~~~gv~~l~~~i~~~~~~~~  180 (211)
                      ++++||+++.|++++|++|.+.+.+..
T Consensus       165 ~~~~Sa~~g~gv~~l~~~l~~~~~~~~  191 (199)
T 4bas_A          165 IFASNGLKGTGVHEGFSWLQETASRQS  191 (199)
T ss_dssp             EEECBTTTTBTHHHHHHHHHHHHHHHC
T ss_pred             EEEeeCCCccCHHHHHHHHHHHHHHHh
Confidence            999999999999999999999887654

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=99.98  E-value=3e-32  Score=191.09  Aligned_cols=157  Identities=22%  Similarity=0.369  Sum_probs=122.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEEEEE
Q 028300           15 FKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYD   94 (211)
Q Consensus        15 ~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d   94 (211)
                      +||+++|++|+|||||+++|.++.+..+.|+.+....  .+.  .....+.+||+||++.+...+..+++++|++++|||
T Consensus         1 ~ki~~~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~--~~~--~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d   76 (164)
T 1r8s_A            1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE--TVE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD   76 (164)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSCCEE--EEE--CSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCcCcccCcCceeEE--EEE--ECCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEE
Confidence            5899999999999999999999888666777764433  222  345789999999999999889999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHH-----HHcCCeEEEeeccCCCcHHHHH
Q 028300           95 VTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALA-----KEHGSLFLECSAKTRENVEQCF  169 (211)
Q Consensus        95 ~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~~~gv~~l~  169 (211)
                      +++++++..+.. |...+.......+.|+++|+||+|+.+..  ...+.....     ...+++++++||+++.|++++|
T Consensus        77 ~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  153 (164)
T 1r8s_A           77 SNDRERVNEARE-ELMRMLAEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGL  153 (164)
T ss_dssp             TTCGGGHHHHHH-HHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHH
T ss_pred             CCCHHHHHHHHH-HHHHHHhchhhcCCeEEEEEECcCCcCCC--CHHHHHHHhCcccccCccEEEEEcccCCCcCHHHHH
Confidence            999999999887 55444332245689999999999996542  222222111     1134579999999999999999


Q ss_pred             HHHHHHHHh
Q 028300          170 EQLALKIME  178 (211)
Q Consensus       170 ~~i~~~~~~  178 (211)
                      ++|.+.+.+
T Consensus       154 ~~l~~~i~~  162 (164)
T 1r8s_A          154 DWLSNQLRN  162 (164)
T ss_dssp             HHHHHHC--
T ss_pred             HHHHHHHhh
Confidence            999987754

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=99.97  E-value=1.1e-30  Score=187.76  Aligned_cols=157  Identities=23%  Similarity=0.309  Sum_probs=126.4

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEE
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIIL   91 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   91 (211)
                      .+.++|+++|++|||||||++++.+..+..+.++.+...  ..+.+++  ..+.+||+||+..+...+..+++++|++++
T Consensus        21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~   96 (190)
T 1m2o_B           21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTS--EELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIVF   96 (190)
T ss_dssp             ---CEEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCEE--EEEEETT--EEEEEEECCCSGGGTTSGGGGCTTCCEEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCCccccCCCCCe--EEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEEE
Confidence            457899999999999999999999998877777777653  3445554  789999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHH------------cCCeEEEeec
Q 028300           92 VYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKE------------HGSLFLECSA  159 (211)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~------------~~~~~~~~Sa  159 (211)
                      |||++++++++++.. |...+.......++|+++|+||+|+.+  .+..++..+....            .+++++++||
T Consensus        97 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  173 (190)
T 1m2o_B           97 LVDAADPERFDEARV-ELDALFNIAELKDVPFVILGNKIDAPN--AVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSV  173 (190)
T ss_dssp             EEETTCGGGHHHHHH-HHHHHHTCGGGTTCCEEEEEECTTSTT--CCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBT
T ss_pred             EEECCChHHHHHHHH-HHHHHHcchhhcCCCEEEEEECCCCcC--CCCHHHHHHHhCCccccccccccccceEEEEEeEC
Confidence            999999999999988 555443332346899999999999965  4555555554432            3457999999


Q ss_pred             cCCCcHHHHHHHHHHH
Q 028300          160 KTRENVEQCFEQLALK  175 (211)
Q Consensus       160 ~~~~gv~~l~~~i~~~  175 (211)
                      ++|.|++++|++|.+.
T Consensus       174 ~~g~gi~~l~~~l~~~  189 (190)
T 1m2o_B          174 VMRNGYLEAFQWLSQY  189 (190)
T ss_dssp             TTTBSHHHHHHHHHTT
T ss_pred             CcCCCHHHHHHHHHhh
Confidence            9999999999998753

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=99.97  E-value=6.9e-32  Score=193.63  Aligned_cols=163  Identities=21%  Similarity=0.367  Sum_probs=126.3

Q ss_pred             CCceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcE
Q 028300           10 SYDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQG   88 (211)
Q Consensus        10 ~~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~   88 (211)
                      .....+||+|+|++|+|||||+++|.+..+ ..+.++.+.++..  +.  ...+.+.+||+||+..+...+..+++++|+
T Consensus        18 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   93 (188)
T 1zd9_A           18 GSKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRK--IT--KGNVTIKLWDIGGQPRFRSMWERYCRGVSA   93 (188)
T ss_dssp             -CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEE--EE--ETTEEEEEEEECCSHHHHTTHHHHHTTCSE
T ss_pred             CCCCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEE--EE--eCCEEEEEEECCCCHhHHHHHHHHHccCCE
Confidence            345689999999999999999999999888 4677777776653  22  245789999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHH-----HcCCeEEEeeccCCC
Q 028300           89 IILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAK-----EHGSLFLECSAKTRE  163 (211)
Q Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa~~~~  163 (211)
                      +++|||+++++++..+...+...+.. ....++|+++|+||+|+....  ...+......     ..+++++++||+++.
T Consensus        94 ii~v~D~~~~~s~~~~~~~~~~~~~~-~~~~~~piilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~  170 (188)
T 1zd9_A           94 IVYMVDAADQEKIEASKNELHNLLDK-PQLQGIPVLVLGNKRDLPGAL--DEKELIEKMNLSAIQDREICCYSISCKEKD  170 (188)
T ss_dssp             EEEEEETTCGGGHHHHHHHHHHHHTC-GGGTTCCEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCT
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHhC-cccCCCCEEEEEECCCCccCC--CHHHHHHHhChhhhccCCeeEEEEECCCCC
Confidence            99999999999999988844444332 234689999999999996542  2222222111     234579999999999


Q ss_pred             cHHHHHHHHHHHHHhc
Q 028300          164 NVEQCFEQLALKIMEV  179 (211)
Q Consensus       164 gv~~l~~~i~~~~~~~  179 (211)
                      |++++|++|.+.+.+.
T Consensus       171 gv~~l~~~l~~~~~~~  186 (188)
T 1zd9_A          171 NIDITLQWLIQHSKSR  186 (188)
T ss_dssp             THHHHHHHHHHTCC--
T ss_pred             CHHHHHHHHHHHHHhh
Confidence            9999999999876543

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=99.97  E-value=5.1e-31  Score=190.65  Aligned_cols=157  Identities=22%  Similarity=0.315  Sum_probs=120.4

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEE
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIIL   91 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   91 (211)
                      .+.++|+++|++|||||||+++|.++.+..+.++.+.+..  .+.+++  ..+.+||+||++.++..+..+++.+|++++
T Consensus        23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~--~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~   98 (198)
T 1f6b_A           23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSE--ELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIVF   98 (198)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSCC------CCCCCSCE--EEEETT--EEEEEEEECC----CCGGGGGGGGCSEEEE
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeE--EEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCEEEE
Confidence            4578999999999999999999999888777777776543  444554  789999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHH-----------------cCCeE
Q 028300           92 VYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKE-----------------HGSLF  154 (211)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~-----------------~~~~~  154 (211)
                      |||+++++++.++.. |...+.......++|+++|+||+|+.+  .+..++...+...                 .++++
T Consensus        99 v~D~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (198)
T 1f6b_A           99 LVDCADHERLLESKE-ELDSLMTDETIANVPILILGNKIDRPE--AISEERLREMFGLYGQTTGKGSVSLKELNARPLEV  175 (198)
T ss_dssp             EEETTCGGGHHHHHH-HHHHHHTCGGGTTSCEEEEEECTTSTT--CCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEE
T ss_pred             EEECCCHHHHHHHHH-HHHHHHhCcccCCCcEEEEEECCCccc--cCCHHHHHHHhCcccccccccccccccccCceEEE
Confidence            999999999999988 555544332346899999999999965  4566666665542                 24579


Q ss_pred             EEeeccCCCcHHHHHHHHHHH
Q 028300          155 LECSAKTRENVEQCFEQLALK  175 (211)
Q Consensus       155 ~~~Sa~~~~gv~~l~~~i~~~  175 (211)
                      +++||++|.|++++|++|.+.
T Consensus       176 ~~~SA~~g~gv~~l~~~l~~~  196 (198)
T 1f6b_A          176 FMCSVLKRQGYGEGFRWMAQY  196 (198)
T ss_dssp             EECBTTTTBSHHHHHHHHHTT
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            999999999999999998764

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=99.97  E-value=2.1e-31  Score=190.00  Aligned_cols=162  Identities=24%  Similarity=0.354  Sum_probs=123.7

Q ss_pred             CCCCCceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCC
Q 028300            7 QSNSYDLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGA   86 (211)
Q Consensus         7 ~~~~~~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~   86 (211)
                      ......+.+||+++|.+|+|||||+++|.+..+..+.++.+.....  +.+.+  ..+.+||+||++.+...+..+++++
T Consensus        14 ~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~--~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~   89 (181)
T 2h17_A           14 LVPRGSQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEE--IVINN--TRFLMWDIGGQESLRSSWNTYYTNT   89 (181)
T ss_dssp             -------CEEEEEEEETTSSHHHHHHHHHTTSCEEEECCSSSSCEE--EEETT--EEEEEEEESSSGGGTCGGGGGGTTC
T ss_pred             ccCCCCceeEEEEECCCCCCHHHHHHHHhcCCCCccCCcCceeeEE--EEECC--EEEEEEECCCCHhHHHHHHHHhccC
Confidence            3455578899999999999999999999999886666777765543  33333  7899999999999999999999999


Q ss_pred             cEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHH-----HHcCCeEEEeeccC
Q 028300           87 QGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALA-----KEHGSLFLECSAKT  161 (211)
Q Consensus        87 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~  161 (211)
                      |++++|||+++.++++.+...+...+.. ....++|+++|+||+|+.+.  ...++.....     ...+++++++||++
T Consensus        90 d~ii~v~D~~~~~s~~~~~~~~~~~~~~-~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~  166 (181)
T 2h17_A           90 EFVIVVVDSTDRERISVTREELYKMLAH-EDLRKAGLLIFANKQDVKEC--MTVAEISQFLKLTSIKDHQWHIQACCALT  166 (181)
T ss_dssp             CEEEEEEETTCTTTHHHHHHHHHHHHTC-GGGTTCEEEEEEECTTSTTC--CCHHHHHHHTTGGGCCSSCEEEEECBTTT
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHhC-hhhCCCeEEEEEECCCcccC--CCHHHHHHHhCcccccCCceEEEEccCCC
Confidence            9999999999999999998844444432 23468999999999999653  2333333322     12345899999999


Q ss_pred             CCcHHHHHHHHHHH
Q 028300          162 RENVEQCFEQLALK  175 (211)
Q Consensus       162 ~~gv~~l~~~i~~~  175 (211)
                      +.|++++|++|.+.
T Consensus       167 g~gi~~l~~~l~~~  180 (181)
T 2h17_A          167 GEGLCQGLEWMMSR  180 (181)
T ss_dssp             TBTHHHHHHHHHTC
T ss_pred             CcCHHHHHHHHHhh
Confidence            99999999998753

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=99.97  E-value=1.2e-30  Score=187.48  Aligned_cols=164  Identities=22%  Similarity=0.301  Sum_probs=124.2

Q ss_pred             CCCceeeEEEEEcCCCCcHHHHHHHHhhCC-C-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCC
Q 028300            9 NSYDLSFKILLIGDSGVGKSSLLVSFISSS-V-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGA   86 (211)
Q Consensus         9 ~~~~~~~~I~v~G~~~~GKssli~~l~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~   86 (211)
                      ....+.+||+|+|.+|+|||||+++|.+.. + ..+.++.+..  ...+.+.  +..+.+||+||++.+...+..+++++
T Consensus        16 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~~--~~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~   91 (190)
T 2h57_A           16 PRGSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFS--IEKFKSS--SLSFTVFDMSGQGRYRNLWEHYYKEG   91 (190)
T ss_dssp             -----CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSSEE--EEEEECS--SCEEEEEEECCSTTTGGGGGGGGGGC
T ss_pred             cCCCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCcccee--EEEEEEC--CEEEEEEECCCCHHHHHHHHHHHhcC
Confidence            445678999999999999999999999887 3 5556666643  3334443  47899999999999999999999999


Q ss_pred             cEEEEEEECCChhhHHHHHHHHHHHhhhhccC--CCccEEEEeecCCCCCCcccCHHHHHHHHH-----HcCCeEEEeec
Q 028300           87 QGIILVYDVTRRETFTNLSDVWAKEVDLYSTN--QDCVKMLVGNKVDRDSERVVSREEGIALAK-----EHGSLFLECSA  159 (211)
Q Consensus        87 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa  159 (211)
                      |++++|||+++++++..+.. |...+......  .++|+++|+||+|+.+.  ...++......     ..+++++++||
T Consensus        92 d~ii~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa  168 (190)
T 2h57_A           92 QAIIFVIDSSDRLRMVVAKE-ELDTLLNHPDIKHRRIPILFFANKMDLRDA--VTSVKVSQLLCLENIKDKPWHICASDA  168 (190)
T ss_dssp             SEEEEEEETTCHHHHHHHHH-HHHHHHHSTTTTTSCCCEEEEEECTTSTTC--CCHHHHHHHHTGGGCCSSCEEEEECBT
T ss_pred             CEEEEEEECCCHHHHHHHHH-HHHHHHhChhhccCCCeEEEEEeCcCcccC--CCHHHHHHHhChhhccCCceEEEEccC
Confidence            99999999999999999888 44444332222  68999999999999653  34445544442     23568999999


Q ss_pred             cCCCcHHHHHHHHHHHHHhc
Q 028300          160 KTRENVEQCFEQLALKIMEV  179 (211)
Q Consensus       160 ~~~~gv~~l~~~i~~~~~~~  179 (211)
                      +++.|++++|++|.+.+.+.
T Consensus       169 ~~~~gi~~l~~~l~~~i~~~  188 (190)
T 2h57_A          169 IKGEGLQEGVDWLQDQIQTV  188 (190)
T ss_dssp             TTTBTHHHHHHHHHHHC---
T ss_pred             CCCcCHHHHHHHHHHHHHHh
Confidence            99999999999999877543

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=99.97  E-value=3.6e-30  Score=184.21  Aligned_cols=161  Identities=24%  Similarity=0.378  Sum_probs=127.8

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEE
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIIL   91 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   91 (211)
                      ...++|+++|++|+|||||++++.+.....+.++.+....  .+.+.  ...+.+||+||+.++...+..+++++|++++
T Consensus        16 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~--~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~   91 (186)
T 1ksh_A           16 ERELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIK--TLEHR--GFKLNIWDVGGQKSLRSYWRNYFESTDGLIW   91 (186)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHTTCCCSSCCCCSSEEEE--EEEET--TEEEEEEEECCSHHHHTTGGGGCTTCSEEEE
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCCCCcccccCccceE--EEEEC--CEEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence            5789999999999999999999998876667777775543  33343  4789999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHH-----HcCCeEEEeeccCCCcHH
Q 028300           92 VYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAK-----EHGSLFLECSAKTRENVE  166 (211)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa~~~~gv~  166 (211)
                      |||++++++++++.. |...+.......++|+++|+||+|+.+...  .++......     ..+++++++||+++.|++
T Consensus        92 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  168 (186)
T 1ksh_A           92 VVDSADRQRMQDCQR-ELQSLLVEERLAGATLLIFANKQDLPGALS--CNAIQEALELDSIRSHHWRIQGCSAVTGEDLL  168 (186)
T ss_dssp             EEETTCGGGHHHHHH-HHHHHHTCGGGTTCEEEEEEECTTSTTCCC--HHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred             EEECcCHHHHHHHHH-HHHHHHhChhcCCCcEEEEEeCccCCCCCC--HHHHHHHhChhhccCCceEEEEeeCCCCCCHH
Confidence            999999999999888 444443322446899999999999965432  233322221     235689999999999999


Q ss_pred             HHHHHHHHHHHhc
Q 028300          167 QCFEQLALKIMEV  179 (211)
Q Consensus       167 ~l~~~i~~~~~~~  179 (211)
                      ++|++|.+.+.+.
T Consensus       169 ~l~~~l~~~i~~~  181 (186)
T 1ksh_A          169 PGIDWLLDDISSR  181 (186)
T ss_dssp             HHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999988665

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=99.97  E-value=1.3e-31  Score=192.84  Aligned_cols=161  Identities=22%  Similarity=0.344  Sum_probs=120.2

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEE
Q 028300           11 YDLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGII   90 (211)
Q Consensus        11 ~~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (211)
                      ....+||+++|++|||||||+++|..+.+..+.++.+...  ..+..  ..+.+.+||+||++.+...+..+++++|+++
T Consensus        26 ~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~~~~t~~~~~--~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii  101 (192)
T 2b6h_A           26 GKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNV--ETVEY--KNICFTVWDVGGQDKIRPLWRHYFQNTQGLI  101 (192)
T ss_dssp             TTSCEEEEEEESTTSSHHHHHHHHCSSCCEEEEEETTEEE--EEEEE--TTEEEEEEECC-----CTTHHHHHHTCCEEE
T ss_pred             cCCccEEEEECCCCCCHHHHHHHHHhCCccccCCcCceeE--EEEEE--CCEEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence            4678999999999999999999999888765555655332  23333  3478999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHH-----HHcCCeEEEeeccCCCcH
Q 028300           91 LVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALA-----KEHGSLFLECSAKTRENV  165 (211)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~~~gv  165 (211)
                      +|||++++++++.+.. |...+.......++|+++|+||+|+.+..  ...+.....     ...+++++++||+++.|+
T Consensus       102 lv~D~~~~~s~~~~~~-~l~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi  178 (192)
T 2b6h_A          102 FVVDSNDRERVQESAD-ELQKMLQEDELRDAVLLVFANKQDMPNAM--PVSELTDKLGLQHLRSRTWYVQATCATQGTGL  178 (192)
T ss_dssp             EEEETTCGGGHHHHHH-HHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCSSCCEEEEECBTTTTBTH
T ss_pred             EEEECCCHHHHHHHHH-HHHHHhcccccCCCeEEEEEECCCCCCCC--CHHHHHHHhCcccccCCceEEEECcCCCcCCH
Confidence            9999999999999887 55444333244689999999999996542  222222111     123457999999999999


Q ss_pred             HHHHHHHHHHHHh
Q 028300          166 EQCFEQLALKIME  178 (211)
Q Consensus       166 ~~l~~~i~~~~~~  178 (211)
                      +++|++|.+.+.+
T Consensus       179 ~~l~~~l~~~i~~  191 (192)
T 2b6h_A          179 YDGLDWLSHELSK  191 (192)
T ss_dssp             HHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999987754

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=99.97  E-value=1.5e-29  Score=183.03  Aligned_cols=168  Identities=45%  Similarity=0.738  Sum_probs=144.6

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEE
Q 028300           11 YDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGI   89 (211)
Q Consensus        11 ~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~   89 (211)
                      ++..++|+++|++|||||||+++|.+..+ ..+.++.+.++....+.+++..+.+.+||++|++.+...+..++..+|++
T Consensus         2 ~~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~   81 (199)
T 2f9l_A            2 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGA   81 (199)
T ss_dssp             CSEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEE
T ss_pred             CcceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEE
Confidence            35689999999999999999999999887 55667777788778888899999999999999999988888899999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHH
Q 028300           90 ILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCF  169 (211)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~  169 (211)
                      ++|+|+++..+++++.. |...+... ...+.|+++++||+|+.+.+.+...++..++...++.++++|++++.|++++|
T Consensus        82 i~v~d~~~~~s~~~~~~-~~~~~~~~-~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~~d~Sal~~~~i~~l~  159 (199)
T 2f9l_A           82 LLVYDIAKHLTYENVER-WLKELRDH-ADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAF  159 (199)
T ss_dssp             EEEEETTCHHHHHTHHH-HHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHH
T ss_pred             EEEEECcCHHHHHHHHH-HHHHHHHh-cCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Confidence            99999999999888876 76665543 34578999999999997767777788888888899999999999999999999


Q ss_pred             HHHHHHHHhcc
Q 028300          170 EQLALKIMEVP  180 (211)
Q Consensus       170 ~~i~~~~~~~~  180 (211)
                      ++|.+.+.+..
T Consensus       160 ~~l~~~~~~~~  170 (199)
T 2f9l_A          160 KNILTEIYRIV  170 (199)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999887643

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=99.97  E-value=2.3e-31  Score=190.99  Aligned_cols=162  Identities=21%  Similarity=0.329  Sum_probs=127.3

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEE
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIIL   91 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   91 (211)
                      ...+||+++|++|+|||||++++..+.+..+.++.+....  .+...  ...+.+||+||++.+...+..+++++|++++
T Consensus        20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~--~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~   95 (189)
T 2x77_A           20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVTTVPTVGVNLE--TLQYK--NISFEVWDLGGQTGVRPYWRCYFSDTDAVIY   95 (189)
T ss_dssp             TSCEEEEEEEETTSSHHHHHHHTCCSCCEEECSSTTCCEE--EEEET--TEEEEEEEECCSSSSCCCCSSSSTTCCEEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHcCCCCCcCCCCceEEE--EEEEC--CEEEEEEECCCCHhHHHHHHHHhhcCCEEEE
Confidence            5789999999999999999999998888666677765443  33333  5789999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHH-----HHHcCCeEEEeeccCCCcHH
Q 028300           92 VYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIAL-----AKEHGSLFLECSAKTRENVE  166 (211)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~-----~~~~~~~~~~~Sa~~~~gv~  166 (211)
                      |||+++++++..+...+...+. .....++|+++|+||+|+.+...  ..+....     +...+++++++||+++.|++
T Consensus        96 v~d~~~~~s~~~~~~~~~~~~~-~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  172 (189)
T 2x77_A           96 VVDSTDRDRMGVAKHELYALLD-EDELRKSLLLIFANKQDLPDAAS--EAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLV  172 (189)
T ss_dssp             EEETTCCTTHHHHHHHHHHHHT-CSTTTTCEEEEEEECTTSTTCCC--HHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred             EEeCCCHHHHHHHHHHHHHHHh-hhhcCCCeEEEEEECCCCcCCCC--HHHHHHHhChhhccCCceEEEEccCCCccCHH
Confidence            9999999999998874444433 22346899999999999965432  2222211     12234579999999999999


Q ss_pred             HHHHHHHHHHHhcc
Q 028300          167 QCFEQLALKIMEVP  180 (211)
Q Consensus       167 ~l~~~i~~~~~~~~  180 (211)
                      ++|++|.+.+.+..
T Consensus       173 ~l~~~l~~~i~~~~  186 (189)
T 2x77_A          173 EGMDWLVERLREQG  186 (189)
T ss_dssp             HHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHhcc
Confidence            99999999887654

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.97  E-value=2.3e-30  Score=185.50  Aligned_cols=163  Identities=23%  Similarity=0.339  Sum_probs=124.4

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEE
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIIL   91 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   91 (211)
                      ...++|+++|++|||||||+++|.++.+..+.++.+....  .+.+.  ...+.+||+||++++...+..+++++|++++
T Consensus        14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~--~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~   89 (187)
T 1zj6_A           14 HQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVE--EIVIN--NTRFLMWDIGGQESLRSSWNTYYTNTEFVIV   89 (187)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTTSCEEEECCSCSSCE--EEEET--TEEEEEEECCC----CGGGHHHHTTCCEEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCCcCcCCCccceE--EEEEC--CEEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence            5679999999999999999999998887666666665543  33333  3789999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHH-----HcCCeEEEeeccCCCcHH
Q 028300           92 VYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAK-----EHGSLFLECSAKTRENVE  166 (211)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa~~~~gv~  166 (211)
                      |||++++++++.+.. |...+.......+.|+++|+||+|+.+.  ...++......     ..+++++++||+++.|++
T Consensus        90 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~  166 (187)
T 1zj6_A           90 VVDSTDRERISVTRE-ELYKMLAHEDLRKAGLLIFANKQDVKEC--MTVAEISQFLKLTSIKDHQWHIQACCALTGEGLC  166 (187)
T ss_dssp             EEETTCTTTHHHHHH-HHHHHHTSGGGTTCEEEEEEECTTSTTC--CCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHH
T ss_pred             EEeCCCHHHHHHHHH-HHHHHHhchhhCCCeEEEEEECCCCcCC--CCHHHHHHHhChhhhcCCCcEEEEccCCCCcCHH
Confidence            999999999999988 5555443323468999999999999653  23344433322     235689999999999999


Q ss_pred             HHHHHHHHHHHhccc
Q 028300          167 QCFEQLALKIMEVPS  181 (211)
Q Consensus       167 ~l~~~i~~~~~~~~~  181 (211)
                      ++|++|.+.+.....
T Consensus       167 ~l~~~l~~~~~~~~~  181 (187)
T 1zj6_A          167 QGLEWMMSRLKIRLE  181 (187)
T ss_dssp             HHHHHHHHHHCC---
T ss_pred             HHHHHHHHHHHHHhh
Confidence            999999998766554

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=99.97  E-value=5e-31  Score=188.07  Aligned_cols=160  Identities=24%  Similarity=0.348  Sum_probs=124.7

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEE
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIIL   91 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   91 (211)
                      ...++|+++|++|||||||+++|.+..+..+.++.+....  .+.++  .+.+.+||+||++.+...+..+++.+|++++
T Consensus        14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g~~~~--~~~~~--~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~   89 (181)
T 1fzq_A           14 DQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIK--SVQSQ--GFKLNVWDIGGQRKIRPYWRSYFENTDILIY   89 (181)
T ss_dssp             SSCEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEEEE--EEEET--TEEEEEEECSSCGGGHHHHHHHHTTCSEEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhcCCCCcccCcCCeEEE--EEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEEE
Confidence            5679999999999999999999998877666777775433  33444  5789999999999999889999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHH-----HHcCCeEEEeeccCCCcHH
Q 028300           92 VYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALA-----KEHGSLFLECSAKTRENVE  166 (211)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~~~gv~  166 (211)
                      |||+++++++..+.. |...+.......++|+++|+||+|+.+...  .++.....     ...+++++++||++|.|++
T Consensus        90 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~  166 (181)
T 1fzq_A           90 VIDSADRKRFEETGQ-ELTELLEEEKLSCVPVLIFANKQDLLTAAP--ASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQ  166 (181)
T ss_dssp             EEETTCGGGHHHHHH-HHHHHTTCGGGTTCCEEEEEECTTSTTCCC--HHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred             EEECcCHHHHHHHHH-HHHHHHhChhhcCCCEEEEEECcCcccCCC--HHHHHHHhCchhccCCceEEEEccCCCCCCHH
Confidence            999999999999887 444433222346899999999999965533  22222221     1234579999999999999


Q ss_pred             HHHHHHHHHHHh
Q 028300          167 QCFEQLALKIME  178 (211)
Q Consensus       167 ~l~~~i~~~~~~  178 (211)
                      ++|++|.+.+.+
T Consensus       167 ~l~~~l~~~~~~  178 (181)
T 1fzq_A          167 DGMNWVCKNVNA  178 (181)
T ss_dssp             HHHHHHHHTC--
T ss_pred             HHHHHHHHHHHh
Confidence            999999887654

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.97  E-value=1.2e-30  Score=186.20  Aligned_cols=162  Identities=25%  Similarity=0.354  Sum_probs=124.6

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEE
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIIL   91 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   91 (211)
                      ...++|+++|++|||||||++++.++.+..+.++.+....  .+.+.  +..+.+||+||+..+...+..+++++|++++
T Consensus        16 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~--~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~   91 (183)
T 1moz_A           16 NKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVE--TLSYK--NLKLNVWDLGGQTSIRPYWRCYYADTAAVIF   91 (183)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTCCSEEEEECSSTTCCEE--EEEET--TEEEEEEEEC----CCTTGGGTTTTEEEEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCcCccCCcCccceE--EEEEC--CEEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence            5789999999999999999999998888667777775543  33343  3789999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHH-----cCCeEEEeeccCCCcHH
Q 028300           92 VYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKE-----HGSLFLECSAKTRENVE  166 (211)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~-----~~~~~~~~Sa~~~~gv~  166 (211)
                      |+|++++++++.+.. |...+.......++|+++|+||+|+.+.  ...++.......     .+++++++||+++.|++
T Consensus        92 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  168 (183)
T 1moz_A           92 VVDSTDKDRMSTASK-ELHLMLQEEELQDAALLVFANKQDQPGA--LSASEVSKELNLVELKDRSWSIVASSAIKGEGIT  168 (183)
T ss_dssp             EEETTCTTTHHHHHH-HHHHHTTSSTTSSCEEEEEEECTTSTTC--CCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHH
T ss_pred             EEECCCHHHHHHHHH-HHHHHHcChhhCCCeEEEEEECCCCCCC--CCHHHHHHHhCcccccCCceEEEEccCCCCcCHH
Confidence            999999999999888 5554443323568999999999998654  233333332221     23479999999999999


Q ss_pred             HHHHHHHHHHHhcc
Q 028300          167 QCFEQLALKIMEVP  180 (211)
Q Consensus       167 ~l~~~i~~~~~~~~  180 (211)
                      ++|++|.+.+.+.+
T Consensus       169 ~l~~~l~~~~~~~q  182 (183)
T 1moz_A          169 EGLDWLIDVIKEEQ  182 (183)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcc
Confidence            99999999886543

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=99.97  E-value=1.1e-28  Score=177.37  Aligned_cols=166  Identities=45%  Similarity=0.750  Sum_probs=144.8

Q ss_pred             CCCceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCc
Q 028300            9 NSYDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQ   87 (211)
Q Consensus         9 ~~~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d   87 (211)
                      ...+..++|+++|++|||||||++++.+..+ ..+.++.+.++....+.+++..+.+.+||++|...+...+..+++.++
T Consensus        24 ~~~~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~  103 (191)
T 1oix_A           24 DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAV  103 (191)
T ss_dssp             CCCSEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCC
T ss_pred             cccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCC
Confidence            3456789999999999999999999999887 567788888888888888998999999999999988888888899999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHH
Q 028300           88 GIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQ  167 (211)
Q Consensus        88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~  167 (211)
                      ++++|+|.++..+++++.. |...+... ...+.|+++++||+|+.+...+...+++.++...++.++++|++++.|+++
T Consensus       104 ~~i~v~d~~~~~s~~~~~~-~~~~~~~~-~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~ld~Sald~~~v~~  181 (191)
T 1oix_A          104 GALLVYDIAKHLTYENVER-WLKELRDH-ADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEA  181 (191)
T ss_dssp             EEEEEEETTCHHHHHTHHH-HHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHH
T ss_pred             EEEEEEECcCHHHHHHHHH-HHHHHHHh-cCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence            9999999999999888776 66655443 345789999999999977667777888889988999999999999999999


Q ss_pred             HHHHHHHHH
Q 028300          168 CFEQLALKI  176 (211)
Q Consensus       168 l~~~i~~~~  176 (211)
                      +|++|.+.+
T Consensus       182 l~~~l~~~i  190 (191)
T 1oix_A          182 AFQTILTEI  190 (191)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            999998765

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=99.97  E-value=4.1e-30  Score=185.55  Aligned_cols=164  Identities=24%  Similarity=0.246  Sum_probs=119.7

Q ss_pred             CCCCCceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceee--EEEEEEEC-CEEEEEEEEeCCChhhhccch---h
Q 028300            7 QSNSYDLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDF--KIKLLTVA-GKRLKLTIWDTAGQERFRTLT---S   80 (211)
Q Consensus         7 ~~~~~~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~l~D~~g~~~~~~~~---~   80 (211)
                      ........+||+++|.+|||||||++++.+.....  ++.+.+.  ......+. +..+.+.+||++|++.|....   .
T Consensus        13 ~~~~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~   90 (196)
T 3llu_A           13 NLYFQGSKPRILLMGLRRSGKSSIQKVVFHKMSPN--ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYE   90 (196)
T ss_dssp             -------CCEEEEEESTTSSHHHHHHHHHSCCCGG--GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHH
T ss_pred             CCcccCcceEEEEECCCCCCHHHHHHHHHhcCCCc--ceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcc
Confidence            44566788999999999999999999887653333  3333322  22222332 566889999999999987766   7


Q ss_pred             hhccCCcEEEEEEECCCh--hhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCC-------cccCHHHHHHHHH---
Q 028300           81 SYYRGAQGIILVYDVTRR--ETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSE-------RVVSREEGIALAK---  148 (211)
Q Consensus        81 ~~~~~~d~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~-------~~v~~~~~~~~~~---  148 (211)
                      .+++++|++|+|||+++.  +++..+.. |+..+..  ...++|+++|+||+|+.+.       +.+...+...++.   
T Consensus        91 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~-~l~~~~~--~~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~  167 (196)
T 3llu_A           91 MIFRGTGALIYVIDAQDDYMEALTRLHI-TVSKAYK--VNPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGL  167 (196)
T ss_dssp             HHHHTCSEEEEEEETTSCCHHHHHHHHH-HHHHHHH--HCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             cccccCCEEEEEEECCCchHHHHHHHHH-HHHHHHh--cCCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhh
Confidence            899999999999999997  56666655 5555432  2568999999999998552       3444555666776   


Q ss_pred             -HcCCeEEEeeccCCCcHHHHHHHHHHHH
Q 028300          149 -EHGSLFLECSAKTRENVEQCFEQLALKI  176 (211)
Q Consensus       149 -~~~~~~~~~Sa~~~~gv~~l~~~i~~~~  176 (211)
                       ..+++|+++||++ .|++++|.+|++.+
T Consensus       168 ~~~~~~~~e~Sa~~-~~v~~~f~~l~~~l  195 (196)
T 3llu_A          168 EKLHLSFYLTSIYD-HSIFEAFSKVVQKL  195 (196)
T ss_dssp             TTSCEEEEEECTTS-THHHHHHHHHHHHT
T ss_pred             hcCCcceEEEEech-hhHHHHHHHHHHHh
Confidence             5678999999999 99999999998865

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=99.97  E-value=1.4e-28  Score=191.03  Aligned_cols=164  Identities=27%  Similarity=0.523  Sum_probs=140.7

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEE
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGII   90 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (211)
                      ...++|+++|.+|+|||||++++..+.+ ..+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+|+++
T Consensus       153 ~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i  231 (332)
T 2wkq_A          153 KELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFL  231 (332)
T ss_dssp             TTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEE-EEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEE
T ss_pred             cceeEEEEECCCCCChHHHHHHHHhCCCCcccCCccccee-EEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEE
Confidence            4568999999999999999999998887 55556665444 445677888899999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCC------------cccCHHHHHHHHHHcCC-eEEEe
Q 028300           91 LVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSE------------RVVSREEGIALAKEHGS-LFLEC  157 (211)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~------------~~v~~~~~~~~~~~~~~-~~~~~  157 (211)
                      +|||++++.+++.+...|...+...  ..++|+++|+||+|+.+.            +.+...+...++...++ +|+++
T Consensus       232 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  309 (332)
T 2wkq_A          232 ICFSLVSPASFHHVRAKWYPEVRHH--CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLEC  309 (332)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHH--CTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHHhh--CCCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEe
Confidence            9999999999999985588877765  348999999999998543            45777888888888887 89999


Q ss_pred             eccCCCcHHHHHHHHHHHHHh
Q 028300          158 SAKTRENVEQCFEQLALKIME  178 (211)
Q Consensus       158 Sa~~~~gv~~l~~~i~~~~~~  178 (211)
                      ||+++.|++++|++|.+.+..
T Consensus       310 Sa~~~~gi~~l~~~l~~~~~~  330 (332)
T 2wkq_A          310 SALTQRGLKTVFDEAIRAVLC  330 (332)
T ss_dssp             CTTTCTTHHHHHHHHHHHHHC
T ss_pred             cCCCCcCHHHHHHHHHHHHhc
Confidence            999999999999999988764

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=99.96  E-value=9.2e-30  Score=181.97  Aligned_cols=164  Identities=20%  Similarity=0.376  Sum_probs=120.7

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhhC--CC-CCCCCccceeeEEEEEEE---CCEEEEEEEEeCCChhhhccchhhhccCCc
Q 028300           14 SFKILLIGDSGVGKSSLLVSFISS--SV-DDLSPTIGVDFKIKLLTV---AGKRLKLTIWDTAGQERFRTLTSSYYRGAQ   87 (211)
Q Consensus        14 ~~~I~v~G~~~~GKssli~~l~~~--~~-~~~~~~~~~~~~~~~~~~---~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d   87 (211)
                      .+||+++|++|||||||+++|.+.  .+ ..+.++.+.++....+..   .+..+.+.+||++|++++..++..+++.+|
T Consensus         2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~   81 (184)
T 2zej_A            2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA   81 (184)
T ss_dssp             -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence            589999999999999999999985  34 446677777766554433   235678999999999999988899999999


Q ss_pred             EEEEEEECCCh-hhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccC---HHHHHHHHHHcCCe----EEEeec
Q 028300           88 GIILVYDVTRR-ETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVS---REEGIALAKEHGSL----FLECSA  159 (211)
Q Consensus        88 ~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~---~~~~~~~~~~~~~~----~~~~Sa  159 (211)
                      ++++|||++++ .++..+.. |+..+...  ..+.|+++|+||+|+.+.+.+.   ......++..++++    |+++||
T Consensus        82 ~~i~v~d~~~~~~s~~~~~~-~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  158 (184)
T 2zej_A           82 LYLAVYDLSKGQAEVDAMKP-WLFNIKAR--ASSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNA  158 (184)
T ss_dssp             EEEEEEEGGGCHHHHHTHHH-HHHHHHHH--CTTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEECCT
T ss_pred             EEEEEEeCCcchhHHHHHHH-HHHHHHhh--CCCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhheEEEec
Confidence            99999999997 47888776 77776544  3578999999999986554332   22234444456776    999999


Q ss_pred             cCCC-cHHHHHHHHHHHHHhcc
Q 028300          160 KTRE-NVEQCFEQLALKIMEVP  180 (211)
Q Consensus       160 ~~~~-gv~~l~~~i~~~~~~~~  180 (211)
                      +++. +++++++.|.+.+.+.+
T Consensus       159 ~~~~~~~~~l~~~i~~~~~~~~  180 (184)
T 2zej_A          159 TEESDALAKLRKTIINESLNFK  180 (184)
T ss_dssp             TSCCHHHHHHHHHHHHHHHCC-
T ss_pred             ccCchhHHHHHHHHHHHHhccc
Confidence            9997 99999999998876643

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=99.93  E-value=1e-31  Score=195.13  Aligned_cols=162  Identities=29%  Similarity=0.559  Sum_probs=133.0

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEE
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGII   90 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (211)
                      ...+||+++|.+|+|||||+++|.++.+ ..+.++.+..+ ...+.+++..+.+.+||+||++++...+..+++++|+++
T Consensus        28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii  106 (204)
T 3th5_A           28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFL  106 (204)
Confidence            5789999999999999999999998877 44455554333 334455667788899999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCc------------ccCHHHHHHHHHHcCC-eEEEe
Q 028300           91 LVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSER------------VVSREEGIALAKEHGS-LFLEC  157 (211)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~------------~v~~~~~~~~~~~~~~-~~~~~  157 (211)
                      +|||++++.+++.+...|...+...  ..++|+++|+||+|+.+..            .+...+...++...++ +++++
T Consensus       107 lv~D~~~~~s~~~~~~~~~~~l~~~--~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~v  184 (204)
T 3th5_A          107 ICFSLVSPASFENVRAKWYPEVRHH--CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLEC  184 (204)
Confidence            9999999999999875587777654  2389999999999996543            4455666677777777 89999


Q ss_pred             eccCCCcHHHHHHHHHHHH
Q 028300          158 SAKTRENVEQCFEQLALKI  176 (211)
Q Consensus       158 Sa~~~~gv~~l~~~i~~~~  176 (211)
                      ||+++.|++++|++|.+.+
T Consensus       185 SA~~g~gi~~l~~~l~~~i  203 (204)
T 3th5_A          185 SALTQRGLKTVFDEAIRAV  203 (204)
Confidence            9999999999999998765

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=99.96  E-value=8.1e-30  Score=197.46  Aligned_cols=162  Identities=21%  Similarity=0.342  Sum_probs=121.7

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEE
Q 028300           11 YDLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGII   90 (211)
Q Consensus        11 ~~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (211)
                      ....+||+|+|.+|+|||||+++|.+..+....++.+..+..  +.  ...+.+.||||||++.+..++..+++.+|++|
T Consensus       162 ~~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~pT~~~~~~~--~~--~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vi  237 (329)
T 3o47_A          162 GKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVET--VE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI  237 (329)
T ss_dssp             -CCSEEEEEEESTTSSHHHHHHHTCSSCCEEEEEETTEEEEE--EE--ETTEEEEEEECC-----CCSHHHHHTTEEEEE
T ss_pred             ccCcceEEEECCCCccHHHHHHHHhCCCCCCcccccceEEEE--Ee--cCcEEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence            346789999999999999999999988875444555544432  22  24578999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHH-----HcCCeEEEeeccCCCcH
Q 028300           91 LVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAK-----EHGSLFLECSAKTRENV  165 (211)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa~~~~gv  165 (211)
                      +|||+++++++..+...|...+... ...++|++||+||+|+.+...  ..+......     ..+++++++||+++.||
T Consensus       238 lV~D~~~~~s~~~~~~~~~~~~~~~-~~~~~piilV~NK~Dl~~~~~--~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi  314 (329)
T 3o47_A          238 FVVDSNDRERVNEAREELMRMLAED-ELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRHRNWYIQATCATSGDGL  314 (329)
T ss_dssp             EEEETTCSSSHHHHHHHHHHHHTCG-GGTTCEEEEEEECTTSTTCCC--HHHHHHHHTCTTCCSSCEEEEECBTTTTBTH
T ss_pred             EEEECCchHHHHHHHHHHHHHHhhh-ccCCCeEEEEEECccCCcccC--HHHHHHHhchhhhhcCCCEEEEEECCCCcCH
Confidence            9999999999999988566655543 456899999999999965432  222222211     13457999999999999


Q ss_pred             HHHHHHHHHHHHhc
Q 028300          166 EQCFEQLALKIMEV  179 (211)
Q Consensus       166 ~~l~~~i~~~~~~~  179 (211)
                      +++|++|.+.+.+.
T Consensus       315 ~el~~~l~~~l~~~  328 (329)
T 3o47_A          315 YEGLDWLSNQLRNQ  328 (329)
T ss_dssp             HHHHHHHHHHHTC-
T ss_pred             HHHHHHHHHHHHhc
Confidence            99999999987653

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=99.96  E-value=4.2e-28  Score=177.23  Aligned_cols=162  Identities=20%  Similarity=0.238  Sum_probs=116.9

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCE-EEEEEEEeCCChhhhcc-chhhhccCCcEE
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGK-RLKLTIWDTAGQERFRT-LTSSYYRGAQGI   89 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~D~~g~~~~~~-~~~~~~~~~d~~   89 (211)
                      ...+||+++|++|+|||||+++|.+..+....++.......  +.+.+. .+.+.+||+||+..+.. ++..+++.+|++
T Consensus         5 ~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~   82 (214)
T 2fh5_B            5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAI--YKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAV   82 (214)
T ss_dssp             ---CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCSCEEEE--EECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCcceeeEE--EEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCEE
Confidence            46799999999999999999999999885544444444432  444443 68899999999999887 788889999999


Q ss_pred             EEEEECCChh-hHHHHHHHHHHHhhhh-ccCCCccEEEEeecCCCCCCcccCH--HHHHHHHH-----------------
Q 028300           90 ILVYDVTRRE-TFTNLSDVWAKEVDLY-STNQDCVKMLVGNKVDRDSERVVSR--EEGIALAK-----------------  148 (211)
Q Consensus        90 i~v~d~~~~~-s~~~~~~~~~~~~~~~-~~~~~~p~viv~nK~Dl~~~~~v~~--~~~~~~~~-----------------  148 (211)
                      ++|||+++.. ++......|...+... ....++|+++|+||+|+........  ........                 
T Consensus        83 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~~~  162 (214)
T 2fh5_B           83 VFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSS  162 (214)
T ss_dssp             EEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC----------
T ss_pred             EEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccccCCc
Confidence            9999999854 4666666566665542 1345799999999999975543211  11111111                 


Q ss_pred             ----------------Hc--CCeEEEeeccCC------CcHHHHHHHHHHH
Q 028300          149 ----------------EH--GSLFLECSAKTR------ENVEQCFEQLALK  175 (211)
Q Consensus       149 ----------------~~--~~~~~~~Sa~~~------~gv~~l~~~i~~~  175 (211)
                                      .+  +++|++|||++|      .||+++|++|.+.
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~  213 (214)
T 2fh5_B          163 TAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI  213 (214)
T ss_dssp             --CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred             cccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence                            11  567999999999      9999999999875

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=99.95  E-value=4.6e-29  Score=187.02  Aligned_cols=169  Identities=21%  Similarity=0.281  Sum_probs=120.6

Q ss_pred             CCCCCCceeeEEEEEcCC---------CCcHHHHHHHHhhC---CC-CCCCCcc-ceeeEEEE--------------EEE
Q 028300            6 GQSNSYDLSFKILLIGDS---------GVGKSSLLVSFISS---SV-DDLSPTI-GVDFKIKL--------------LTV   57 (211)
Q Consensus         6 ~~~~~~~~~~~I~v~G~~---------~~GKssli~~l~~~---~~-~~~~~~~-~~~~~~~~--------------~~~   57 (211)
                      +........+||+|+|.+         |||||||+++|.+.   .+ ..+.++. +.++....              ...
T Consensus        11 ~~~~~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~   90 (255)
T 3c5h_A           11 RENLYFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLE   90 (255)
T ss_dssp             CTTSSCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC----
T ss_pred             cCCCCCCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeeccccccccccccccc
Confidence            344556788999999999         99999999999984   44 3444443 22211111              113


Q ss_pred             CCEEEEEEEEe-----------------------CCChhhhccchhhhcc---------------------CCcEEEEEE
Q 028300           58 AGKRLKLTIWD-----------------------TAGQERFRTLTSSYYR---------------------GAQGIILVY   93 (211)
Q Consensus        58 ~~~~~~~~l~D-----------------------~~g~~~~~~~~~~~~~---------------------~~d~~i~v~   93 (211)
                      ++..+.+.+||                       ++|++.+..++..+++                     ++|++|+||
T Consensus        91 ~~~~~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~  170 (255)
T 3c5h_A           91 DCVECKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGI  170 (255)
T ss_dssp             -----CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEE
T ss_pred             CCcEEEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEE
Confidence            45678899999                       5556666666666666                     799999999


Q ss_pred             ECCCh--hhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHH-cCCeEEEeeccCCCcHHHHHH
Q 028300           94 DVTRR--ETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKE-HGSLFLECSAKTRENVEQCFE  170 (211)
Q Consensus        94 d~~~~--~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~-~~~~~~~~Sa~~~~gv~~l~~  170 (211)
                      |++++  .+++.+.. |...+.......++|+++|+||+|+...+.+  ++...++.. .+++++++||+++.|++++|+
T Consensus       171 D~t~~~~~s~~~~~~-~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v--~~~~~~~~~~~~~~~~e~SAk~g~gv~elf~  247 (255)
T 3c5h_A          171 DVSRGMNRNFDDQLK-FVSNLYNQLAKTKKPIVVVLTKCDEGVERYI--RDAHTFALSKKNLQVVETSARSNVNVDLAFS  247 (255)
T ss_dssp             ECBC----CHHHHHH-HHHHHHHHHHHTTCCEEEEEECGGGBCHHHH--HHHHHHHHTSSSCCEEECBTTTTBSHHHHHH
T ss_pred             ECCCCchhhHHHHHH-HHHHHHHHhccCCCCEEEEEEcccccccHHH--HHHHHHHHhcCCCeEEEEECCCCCCHHHHHH
Confidence            99998  89999887 7776654423468999999999999655444  456666665 478999999999999999999


Q ss_pred             HHHHHHH
Q 028300          171 QLALKIM  177 (211)
Q Consensus       171 ~i~~~~~  177 (211)
                      +|.+.+.
T Consensus       248 ~l~~~l~  254 (255)
T 3c5h_A          248 TLVQLID  254 (255)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHhc
Confidence            9988764

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=99.95  E-value=3.1e-27  Score=167.61  Aligned_cols=162  Identities=21%  Similarity=0.229  Sum_probs=118.0

Q ss_pred             CCCceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCc
Q 028300            9 NSYDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQ   87 (211)
Q Consensus         9 ~~~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d   87 (211)
                      ......++|+++|++|+|||||+++|.+..+ ..+.++.+.+.....+.+.+  ..+.+||+||++.+...+...+..+|
T Consensus         3 ~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d   80 (178)
T 2lkc_A            3 HMVERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVND--KKITFLDTPGHEAFTTMRARGAQVTD   80 (178)
T ss_dssp             TTCCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETT--EEEEESCCCSSSSSSCSCCSSCCCCC
T ss_pred             CcCCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCC--ceEEEEECCCCHHHHHHHHHHHhhCC
Confidence            3456789999999999999999999999887 34444444444444455555  35779999999999988889999999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHc-------C--CeEEEee
Q 028300           88 GIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEH-------G--SLFLECS  158 (211)
Q Consensus        88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~-------~--~~~~~~S  158 (211)
                      ++++|+|+++........  +...+    ...++|+++|+||+|+.+..   .++........       +  ++++++|
T Consensus        81 ~~i~v~d~~~~~~~~~~~--~l~~~----~~~~~p~ilv~nK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~S  151 (178)
T 2lkc_A           81 IVILVVAADDGVMPQTVE--AINHA----KAANVPIIVAINKMDKPEAN---PDRVMQELMEYNLVPEEWGGDTIFCKLS  151 (178)
T ss_dssp             EEEEEEETTCCCCHHHHH--HHHHH----GGGSCCEEEEEETTTSSCSC---HHHHHHHHTTTTCCBTTTTSSEEEEECC
T ss_pred             EEEEEEECCCCCcHHHHH--HHHHH----HhCCCCEEEEEECccCCcCC---HHHHHHHHHhcCcChhHcCCcccEEEEe
Confidence            999999998843222222  11122    23478999999999996532   22222222221       1  4799999


Q ss_pred             ccCCCcHHHHHHHHHHHHHhccc
Q 028300          159 AKTRENVEQCFEQLALKIMEVPS  181 (211)
Q Consensus       159 a~~~~gv~~l~~~i~~~~~~~~~  181 (211)
                      |+++.|++++|++|.+.+...+.
T Consensus       152 a~~~~gv~~l~~~l~~~~~~~~~  174 (178)
T 2lkc_A          152 AKTKEGLDHLLEMILLVSEMEEL  174 (178)
T ss_dssp             SSSSHHHHHHHHHHHHHHHHTTT
T ss_pred             cCCCCCHHHHHHHHHHhhhhhcc
Confidence            99999999999999998776544

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=99.95  E-value=1e-27  Score=168.43  Aligned_cols=153  Identities=20%  Similarity=0.216  Sum_probs=110.4

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhc------cchhhhcc-
Q 028300           13 LSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFR------TLTSSYYR-   84 (211)
Q Consensus        13 ~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~------~~~~~~~~-   84 (211)
                      ..++|+++|++|+|||||+++|.+..+ ....++.+.+.....+.+.+  ..+.+|||||+..+.      .+...+++ 
T Consensus         2 ~~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~   79 (165)
T 2wji_A            2 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIIN   79 (165)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT--EEEEEEECCCCSCSSSSSHHHHHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC--cEEEEEECCCcccCCCcchhHHHHHHHHhc
Confidence            368999999999999999999998765 33333333333333444444  578999999987764      23345554 


Q ss_pred             -CCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCC
Q 028300           85 -GAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRE  163 (211)
Q Consensus        85 -~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  163 (211)
                       ++|++++|+|+++.+..   .. |...+..    .++|+++|+||+|+...+.+.. +...++..++++++++||++|.
T Consensus        80 ~~~~~~i~v~D~~~~~~~---~~-~~~~~~~----~~~p~ilv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~SA~~~~  150 (165)
T 2wji_A           80 EKPDLVVNIVDATALERN---LY-LTLQLME----MGANLLLALNKMDLAKSLGIEI-DVDKLEKILGVKVVPLSAAKKM  150 (165)
T ss_dssp             HCCSEEEEEEETTCHHHH---HH-HHHHHHH----TTCCEEEEEECHHHHHHTTCCC-CHHHHHHHHTSCEEECBGGGTB
T ss_pred             CCCCEEEEEecCCchhHh---HH-HHHHHHh----cCCCEEEEEEchHhccccChhh-HHHHHHHHhCCCEEEEEcCCCC
Confidence             89999999999986433   33 5544433    3789999999999854433332 3456677788999999999999


Q ss_pred             cHHHHHHHHHHHH
Q 028300          164 NVEQCFEQLALKI  176 (211)
Q Consensus       164 gv~~l~~~i~~~~  176 (211)
                      |++++|++|.+.+
T Consensus       151 ~v~~l~~~l~~~~  163 (165)
T 2wji_A          151 GIEELKKAISIAV  163 (165)
T ss_dssp             SHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHh
Confidence            9999999998865

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=99.95  E-value=9e-28  Score=184.45  Aligned_cols=164  Identities=26%  Similarity=0.372  Sum_probs=128.7

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhhCCCC----CCCCccceeeEEEEEEECCEEEEEEEEeCCChhhh-----ccchhhhc
Q 028300           13 LSFKILLIGDSGVGKSSLLVSFISSSVD----DLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERF-----RTLTSSYY   83 (211)
Q Consensus        13 ~~~~I~v~G~~~~GKssli~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~-----~~~~~~~~   83 (211)
                      ..+||+++|.+|||||||+++++++...    .+.+|.+..+..  +.+.+ .+.+.+||+||++.+     ...+..++
T Consensus         2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~--~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~   78 (307)
T 3r7w_A            2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSH--LRFLG-NMTLNLWDCGGQDVFMENYFTKQKDHIF   78 (307)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEE--EEETT-TEEEEEEEECCSHHHHHHHHTTTHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEE--EEeCC-ceEEEEEECCCcHHHhhhhhhhHHHHHh
Confidence            4689999999999999999999987432    344555554443  33333 678999999999888     67888899


Q ss_pred             cCCcEEEEEEECCChhhHHHHHHHHHHHhhhh-ccCCCccEEEEeecCCCCC--Ccc----cCHHHHHHHHHHcC---Ce
Q 028300           84 RGAQGIILVYDVTRRETFTNLSDVWAKEVDLY-STNQDCVKMLVGNKVDRDS--ERV----VSREEGIALAKEHG---SL  153 (211)
Q Consensus        84 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~p~viv~nK~Dl~~--~~~----v~~~~~~~~~~~~~---~~  153 (211)
                      +++|++|+|||+++.++++++.. |...+... ....++|+++|+||+|+.+  .+.    +..+++..++..++   ++
T Consensus        79 ~~ad~vi~V~D~t~~~s~~~l~~-~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~  157 (307)
T 3r7w_A           79 QMVQVLIHVFDVESTEVLKDIEI-FAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLI  157 (307)
T ss_dssp             TTCSEEEEEEETTCSCHHHHHHH-HHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCE
T ss_pred             ccCCEEEEEEECCChhhHHHHHH-HHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeE
Confidence            99999999999999999999876 55444332 1256899999999999976  333    45567778888887   68


Q ss_pred             EEEeeccCCCcHHHHHHHHHHHHHhccc
Q 028300          154 FLECSAKTRENVEQCFEQLALKIMEVPS  181 (211)
Q Consensus       154 ~~~~Sa~~~~gv~~l~~~i~~~~~~~~~  181 (211)
                      ++++||++ .++.++|..+++.+.....
T Consensus       158 ~~~tSa~~-~~i~e~~~~iv~~li~~~~  184 (307)
T 3r7w_A          158 GFPTSIWD-ESLYKAWSQIVCSLIPNMS  184 (307)
T ss_dssp             EEECCTTS-SHHHHHHHHHHHTTCSCHH
T ss_pred             EEEeeecC-ChHHHHHHHHHHHHcCCHH
Confidence            99999999 8999999999887765544

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=99.95  E-value=3.2e-27  Score=181.42  Aligned_cols=174  Identities=18%  Similarity=0.146  Sum_probs=133.8

Q ss_pred             CCCCCceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCE-EEEEEEEeCCChhhhc---------
Q 028300            7 QSNSYDLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGK-RLKLTIWDTAGQERFR---------   76 (211)
Q Consensus         7 ~~~~~~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~D~~g~~~~~---------   76 (211)
                      .+......-.|+++|.+|||||||+|+|++..+....+..+++........... ..++.||||||+..+.         
T Consensus         3 ~~~~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~   82 (308)
T 3iev_A            3 HHHHHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSM   82 (308)
T ss_dssp             ----CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHH
T ss_pred             CCCCCCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHH
Confidence            345567788999999999999999999999988666666666655444443333 6789999999975433         


Q ss_pred             -cchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcC--Ce
Q 028300           77 -TLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHG--SL  153 (211)
Q Consensus        77 -~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~--~~  153 (211)
                       ......++.+|++++|+|+++..+..+... |...+..    .++|+++|+||+|+.............+...++  .+
T Consensus        83 ~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~-~~~~l~~----~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~  157 (308)
T 3iev_A           83 VEIAKQSLEEADVILFMIDATEGWRPRDEEI-YQNFIKP----LNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTE  157 (308)
T ss_dssp             HHHHHHHHHHCSEEEEEEETTTBSCHHHHHH-HHHHTGG----GCCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCC
T ss_pred             HHHHHHHhhcCCEEEEEEeCCCCCCchhHHH-HHHHHHh----cCCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCe
Confidence             455677889999999999999877777655 6777664    378999999999997444455556666666665  78


Q ss_pred             EEEeeccCCCcHHHHHHHHHHHHHhccchhcc
Q 028300          154 FLECSAKTRENVEQCFEQLALKIMEVPSLLEE  185 (211)
Q Consensus       154 ~~~~Sa~~~~gv~~l~~~i~~~~~~~~~~~~~  185 (211)
                      ++++||+++.|++++|++|.+.+.+....++.
T Consensus       158 i~~vSA~~g~gv~~L~~~l~~~l~~~~~~~~~  189 (308)
T 3iev_A          158 IVPISALKGANLDELVKTILKYLPEGEPLFPE  189 (308)
T ss_dssp             EEECBTTTTBSHHHHHHHHHHHSCBCCCSSCT
T ss_pred             EEEEeCCCCCCHHHHHHHHHHhCccCCCCCCc
Confidence            99999999999999999999998777655544

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=99.95  E-value=1.2e-27  Score=176.52  Aligned_cols=165  Identities=18%  Similarity=0.091  Sum_probs=114.6

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhhCCCC-CCCCccceeeEEEEEEECCEEEEEEEEeCCChh------h----hccchh
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFISSSVD-DLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQE------R----FRTLTS   80 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~------~----~~~~~~   80 (211)
                      +..++|+|+|.+|||||||+++|++..+. ...+....+.....+...  ...+.+||+||+.      .    +.. +.
T Consensus        27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~~~~~~~-~~  103 (228)
T 2qu8_A           27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHK--LNKYQIIDTPGLLDRAFENRNTIEMTT-IT  103 (228)
T ss_dssp             TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEET--TEEEEEEECTTTTTSCGGGCCHHHHHH-HH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecC--CCeEEEEECCCCcCcccchhhhHHHHH-HH
Confidence            56799999999999999999999988763 211111112222222222  3679999999983      2    221 23


Q ss_pred             hhccCCcEEEEEEECCChhhHHHHH-HHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHH---HHHHHHHHcC--CeE
Q 028300           81 SYYRGAQGIILVYDVTRRETFTNLS-DVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSRE---EGIALAKEHG--SLF  154 (211)
Q Consensus        81 ~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~---~~~~~~~~~~--~~~  154 (211)
                      .++..+|++|+|||++++.++.... ..|...+...  ..++|+++|+||+|+.+.+.+...   ....++...+  +++
T Consensus       104 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (228)
T 2qu8_A          104 ALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSV--FSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKF  181 (228)
T ss_dssp             HHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTC--C-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEEE
T ss_pred             HhhccccEEEEEEecccccCcchHHHHHHHHHHHHh--hcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCceE
Confidence            4577889999999999987764221 1244444432  348999999999999776666543   3455666666  789


Q ss_pred             EEeeccCCCcHHHHHHHHHHHHHhccc
Q 028300          155 LECSAKTRENVEQCFEQLALKIMEVPS  181 (211)
Q Consensus       155 ~~~Sa~~~~gv~~l~~~i~~~~~~~~~  181 (211)
                      +++||+++.|++++|++|.+.+.+.+.
T Consensus       182 ~~~SA~~g~gi~~l~~~l~~~i~~~~~  208 (228)
T 2qu8_A          182 SSFSTLTGVGVEQAKITACELLKNDQA  208 (228)
T ss_dssp             EECCTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred             EEEecccCCCHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999877654

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=99.95  E-value=1.2e-27  Score=172.22  Aligned_cols=160  Identities=16%  Similarity=0.217  Sum_probs=111.9

Q ss_pred             CCCceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCC----------hhhhcc
Q 028300            9 NSYDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAG----------QERFRT   77 (211)
Q Consensus         9 ~~~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g----------~~~~~~   77 (211)
                      ......++|+++|++|+|||||+++|.+..+ ..+.++.+.+.....+..+.   .+.+||+||          ++.+..
T Consensus        18 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~   94 (195)
T 1svi_A           18 YPEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGR   94 (195)
T ss_dssp             SCCSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHH
T ss_pred             CCCCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHHHH
Confidence            3445789999999999999999999999875 56667777666655555543   589999999          667777


Q ss_pred             chhhhccCC---cEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCH--HHHHH-HHHHcC
Q 028300           78 LTSSYYRGA---QGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSR--EEGIA-LAKEHG  151 (211)
Q Consensus        78 ~~~~~~~~~---d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~--~~~~~-~~~~~~  151 (211)
                      ++..+++.+   |++++|+|+++..++....  +...+..    .+.|+++|+||+|+.+.+.+..  ++..+ +....+
T Consensus        95 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~--~~~~~~~----~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~  168 (195)
T 1svi_A           95 MIETYITTREELKAVVQIVDLRHAPSNDDVQ--MYEFLKY----YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPE  168 (195)
T ss_dssp             HHHHHHHHCTTEEEEEEEEETTSCCCHHHHH--HHHHHHH----TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTT
T ss_pred             HHHHHHhhhhcCCEEEEEEECCCCCCHHHHH--HHHHHHH----cCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCC
Confidence            777777666   9999999999877766543  2222222    5789999999999976554432  22222 222235


Q ss_pred             CeEEEeeccCCCcHHHHHHHHHHHHH
Q 028300          152 SLFLECSAKTRENVEQCFEQLALKIM  177 (211)
Q Consensus       152 ~~~~~~Sa~~~~gv~~l~~~i~~~~~  177 (211)
                      ++++++||+++.|++++|++|.+.+.
T Consensus       169 ~~~~~~Sa~~~~gv~~l~~~l~~~l~  194 (195)
T 1svi_A          169 DELILFSSETKKGKDEAWGAIKKMIN  194 (195)
T ss_dssp             SEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred             CceEEEEccCCCCHHHHHHHHHHHhc
Confidence            78999999999999999999988764

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=99.95  E-value=2.3e-27  Score=169.95  Aligned_cols=158  Identities=25%  Similarity=0.298  Sum_probs=116.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhhCCCC-CCCCccceeeEEEEEEECCEEEEEEEEeCCC-----------hhhhccchhhh
Q 028300           15 FKILLIGDSGVGKSSLLVSFISSSVD-DLSPTIGVDFKIKLLTVAGKRLKLTIWDTAG-----------QERFRTLTSSY   82 (211)
Q Consensus        15 ~~I~v~G~~~~GKssli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g-----------~~~~~~~~~~~   82 (211)
                      +||+++|++|||||||+++|.+..+. .+.+  +++.....+...    .+.+||+||           ++.+...+..+
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~--~~t~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~   75 (190)
T 2cxx_A            2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRP--GVTRKIIEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHF   75 (190)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHSCCCSSSSST--TCTTSCEEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhCcCCccCCCC--CccceeEEEecC----CEEEEECCCccccccCCHHHHHHHHHHHHHH
Confidence            68999999999999999999988873 3333  333333333433    689999999           56677777777


Q ss_pred             ccC-CcEEEEEEECCChhhHHHHHHHHHHH--------hhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCe
Q 028300           83 YRG-AQGIILVYDVTRRETFTNLSDVWAKE--------VDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSL  153 (211)
Q Consensus        83 ~~~-~d~~i~v~d~~~~~s~~~~~~~~~~~--------~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~  153 (211)
                      ++. ++++++|+++.+..++.++...|...        +.......++|+++|+||+|+....   .++...++..++.+
T Consensus        76 ~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~---~~~~~~~~~~~~~~  152 (190)
T 2cxx_A           76 IEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV---QEVINFLAEKFEVP  152 (190)
T ss_dssp             HHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH---HHHHHHHHHHHTCC
T ss_pred             HHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH---HHHHHHHHHHhhhh
Confidence            776 77777777777777887775546542        2122234689999999999986654   45566777777764


Q ss_pred             -------EEEeeccCCCcHHHHHHHHHHHHHhccc
Q 028300          154 -------FLECSAKTRENVEQCFEQLALKIMEVPS  181 (211)
Q Consensus       154 -------~~~~Sa~~~~gv~~l~~~i~~~~~~~~~  181 (211)
                             ++++||++|.|++++|++|.+.+.+.+.
T Consensus       153 ~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~  187 (190)
T 2cxx_A          153 LSEIDKVFIPISAKFGDNIERLKNRIFEVIRERQG  187 (190)
T ss_dssp             GGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC--
T ss_pred             hhccCCcEEEEecCCCCCHHHHHHHHHHhcchhhc
Confidence                   7999999999999999999998876554

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=99.94  E-value=2.2e-26  Score=165.38  Aligned_cols=163  Identities=20%  Similarity=0.217  Sum_probs=118.7

Q ss_pred             CCCCCceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCC----------hhhhc
Q 028300            7 QSNSYDLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAG----------QERFR   76 (211)
Q Consensus         7 ~~~~~~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g----------~~~~~   76 (211)
                      .+.+....++|+++|++|+|||||+++|++..+....++.+++..........   .+.+||+||          ...+.
T Consensus        16 ~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~~~~~---~~~i~Dt~G~~~~~~~~~~~~~~~   92 (195)
T 3pqc_A           16 GDYPPPLKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYLVNS---KYYFVDLPGYGYAKVSKKERMLWK   92 (195)
T ss_dssp             TCCCCCTTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEEEETT---TEEEEECCCBSSSCCCHHHHHHHH
T ss_pred             hhCCCCCCeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEEEECC---cEEEEECCCCccccCChhhHHHHH
Confidence            34455677899999999999999999999988777777777766655544433   578999999          56666


Q ss_pred             cchhhhccCC---cEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCccc--CHHHHHHHHHHc-
Q 028300           77 TLTSSYYRGA---QGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVV--SREEGIALAKEH-  150 (211)
Q Consensus        77 ~~~~~~~~~~---d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v--~~~~~~~~~~~~-  150 (211)
                      .++..+++.+   |++++|+|+++..+.....  +...+..    .++|+++|+||+|+.+....  ..++...++... 
T Consensus        93 ~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~--~~~~~~~----~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~  166 (195)
T 3pqc_A           93 RLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLM--MVEWMKS----LNIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYG  166 (195)
T ss_dssp             HHHHHHHHHCTTEEEEEEEEETTSCCCHHHHH--HHHHHHH----TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSC
T ss_pred             HHHHHHHhcCcCceEEEEEecCCCCCCHHHHH--HHHHHHH----cCCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcC
Confidence            6666666655   9999999988754333221  2222222    27899999999999654332  233444555543 


Q ss_pred             CCeEEEeeccCCCcHHHHHHHHHHHHHh
Q 028300          151 GSLFLECSAKTRENVEQCFEQLALKIME  178 (211)
Q Consensus       151 ~~~~~~~Sa~~~~gv~~l~~~i~~~~~~  178 (211)
                      .++++++||+++.|++++|++|.+.+.+
T Consensus       167 ~~~~~~~Sa~~~~gv~~l~~~l~~~l~~  194 (195)
T 3pqc_A          167 EYTIIPTSSVTGEGISELLDLISTLLKE  194 (195)
T ss_dssp             CSCEEECCTTTCTTHHHHHHHHHHHHC-
T ss_pred             CCceEEEecCCCCCHHHHHHHHHHHhhc
Confidence            3689999999999999999999987754

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=99.94  E-value=3.2e-27  Score=164.77  Aligned_cols=149  Identities=19%  Similarity=0.194  Sum_probs=104.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccce--eeEEEEEEECCEEEEEEEEeCCChhh-------hccchhhhccC
Q 028300           15 FKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGV--DFKIKLLTVAGKRLKLTIWDTAGQER-------FRTLTSSYYRG   85 (211)
Q Consensus        15 ~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~D~~g~~~-------~~~~~~~~~~~   85 (211)
                      .||+++|++|+|||||++++.+..+....+..++  +.....+...+  ..+.+||+||...       +...+...++.
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~   79 (161)
T 2dyk_A            2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDR--GRFLLVDTGGLWSGDKWEKKIQEKVDRALED   79 (161)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETT--EEEEEEECGGGCSSSSCCHHHHHHHHHHTTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCC--ceEEEEECCCCCCccchHHHHHHHHHHHHHh
Confidence            5899999999999999999998876333333333  33334444444  3688999999876       33445667899


Q ss_pred             CcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCC-eEEEeeccCCCc
Q 028300           86 AQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGS-LFLECSAKTREN  164 (211)
Q Consensus        86 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~g  164 (211)
                      +|++++|+|+++..+...  ..+...+..    .++|+++|+||+|+.+..    ++...+. .+++ +++++||+++.|
T Consensus        80 ~~~~i~v~d~~~~~~~~~--~~~~~~~~~----~~~p~ilv~nK~Dl~~~~----~~~~~~~-~~~~~~~~~~Sa~~~~g  148 (161)
T 2dyk_A           80 AEVVLFAVDGRAELTQAD--YEVAEYLRR----KGKPVILVATKVDDPKHE----LYLGPLY-GLGFGDPIPTSSEHARG  148 (161)
T ss_dssp             CSEEEEEEESSSCCCHHH--HHHHHHHHH----HTCCEEEEEECCCSGGGG----GGCGGGG-GGSSCSCEECBTTTTBS
T ss_pred             CCEEEEEEECCCcccHhH--HHHHHHHHh----cCCCEEEEEECcccccch----HhHHHHH-hCCCCCeEEEecccCCC
Confidence            999999999998544322  113333332    478999999999986542    2223334 5677 799999999999


Q ss_pred             HHHHHHHHHHHH
Q 028300          165 VEQCFEQLALKI  176 (211)
Q Consensus       165 v~~l~~~i~~~~  176 (211)
                      ++++|++|.+.+
T Consensus       149 v~~l~~~l~~~l  160 (161)
T 2dyk_A          149 LEELLEAIWERL  160 (161)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             hHHHHHHHHHhC
Confidence            999999998764

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=99.94  E-value=4.7e-28  Score=184.73  Aligned_cols=161  Identities=19%  Similarity=0.210  Sum_probs=122.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCCCCC----CCCccceeeEEEEEEECCEEEEEEEEeCCChhhhcc---chhhhccCCcE
Q 028300           16 KILLIGDSGVGKSSLLVSFISSSVDD----LSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRT---LTSSYYRGAQG   88 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~---~~~~~~~~~d~   88 (211)
                      ||+++|..|||||||++++.+..++.    ..+|.+.++..    +. ..+.+++|||+|+++|..   .+..+++++++
T Consensus         1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~----v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~   75 (331)
T 3r7w_B            1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH----FS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGA   75 (331)
T ss_dssp             CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE----EC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSE
T ss_pred             CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE----Ec-cEEEEEEEECCCchhccchhhhhhhhccCCCE
Confidence            68999999999999999887665432    45677766653    22 347899999999999964   35889999999


Q ss_pred             EEEEEECCChhhHHHHHHHH---HHHhhhhccCCCccEEEEeecCCCCCC-------cccCHHHHHHHHHH----cCCeE
Q 028300           89 IILVYDVTRRETFTNLSDVW---AKEVDLYSTNQDCVKMLVGNKVDRDSE-------RVVSREEGIALAKE----HGSLF  154 (211)
Q Consensus        89 ~i~v~d~~~~~s~~~~~~~~---~~~~~~~~~~~~~p~viv~nK~Dl~~~-------~~v~~~~~~~~~~~----~~~~~  154 (211)
                      +|+|||+++.  +.+....|   +..+...  .+++|+++++||+|+..+       +++..++..++++.    ++++|
T Consensus        76 ~IlV~Ditd~--~~~~~~~l~~~l~~~~~~--~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f  151 (331)
T 3r7w_B           76 LVYVIDSQDE--YINAITNLAMIIEYAYKV--NPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSF  151 (331)
T ss_dssp             EEEECCCSSC--TTHHHHHHHHHHHHHHHH--CTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEE
T ss_pred             EEEEEECCch--HHHHHHHHHHHHHHHhhc--CCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceE
Confidence            9999999997  22333324   3333322  468999999999999764       34555666666664    57899


Q ss_pred             EEeeccCCCcHHHHHHHHHHHHHhccchhccc
Q 028300          155 LECSAKTRENVEQCFEQLALKIMEVPSLLEEG  186 (211)
Q Consensus       155 ~~~Sa~~~~gv~~l~~~i~~~~~~~~~~~~~~  186 (211)
                      ++|||++ .+|.++|..|++.+.++....++.
T Consensus       152 ~eTSAkd-~nV~eAFs~iv~~li~~~~~le~~  182 (331)
T 3r7w_B          152 YLTSIFD-HSIYEAFSRIVQKLIPELSFLENM  182 (331)
T ss_dssp             ECCCSSS-SHHHHHHHHHHTTSSTTHHHHHHH
T ss_pred             EEeccCC-CcHHHHHHHHHHHHHhhHHHHHHH
Confidence            9999998 589999999999888877666555

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=99.94  E-value=1.6e-26  Score=165.40  Aligned_cols=157  Identities=19%  Similarity=0.201  Sum_probs=116.5

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhc------cchhhhcc-
Q 028300           13 LSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFR------TLTSSYYR-   84 (211)
Q Consensus        13 ~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~------~~~~~~~~-   84 (211)
                      ..++|+++|++|||||||+++|.+..+ ....++...+.....+...+  ..+.+||+||+..+.      .++..++. 
T Consensus         6 ~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~   83 (188)
T 2wjg_A            6 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIIN   83 (188)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSCCSSSSHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCC--cEEEEEECCCcCccccccHHHHHHHHHHhc
Confidence            679999999999999999999998765 33334444444444445443  678999999987764      23455554 


Q ss_pred             -CCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCC
Q 028300           85 -GAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRE  163 (211)
Q Consensus        85 -~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  163 (211)
                       .+|++++|+|.++.   +.... |...+..    .+.|+++|+||+|+.....+. .....++..++++++++||+++.
T Consensus        84 ~~~~~~i~v~d~~~~---~~~~~-~~~~~~~----~~~piilv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~Sa~~~~  154 (188)
T 2wjg_A           84 EKPDLVVNIVDATAL---ERNLY-LTLQLME----MGANLLLALNKMDLAKSLGIE-IDVDKLEKILGVKVVPLSAAKKM  154 (188)
T ss_dssp             HCCSEEEEEEEGGGH---HHHHH-HHHHHHT----TTCCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBGGGTB
T ss_pred             cCCCEEEEEecchhH---HHHHH-HHHHHHh----cCCCEEEEEEhhhccccccch-HHHHHHHHHhCCCeEEEEecCCC
Confidence             58999999998864   44444 5555443    478999999999985443333 24566677788999999999999


Q ss_pred             cHHHHHHHHHHHHHhcc
Q 028300          164 NVEQCFEQLALKIMEVP  180 (211)
Q Consensus       164 gv~~l~~~i~~~~~~~~  180 (211)
                      |++++|++|.+.+.+..
T Consensus       155 ~v~~l~~~i~~~~~~~~  171 (188)
T 2wjg_A          155 GIEELKKAISIAVKDKK  171 (188)
T ss_dssp             SHHHHHHHHHHHHTTC-
T ss_pred             CHHHHHHHHHHHHHhcc
Confidence            99999999999887765

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=99.94  E-value=9.9e-27  Score=174.36  Aligned_cols=156  Identities=21%  Similarity=0.156  Sum_probs=115.8

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccc------hhhhc--
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTL------TSSYY--   83 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~------~~~~~--   83 (211)
                      .+.++|+++|++|+|||||+++|.+..+. ....++++.......+......+.+||+||...+...      ...++  
T Consensus         3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~-~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~   81 (258)
T 3a1s_A            3 LHMVKVALAGCPNVGKTSLFNALTGTKQY-VANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLLK   81 (258)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHTTCEE-EEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSSHHHHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHCCCCc-ccCCCCceEEEEEEEEEECCeEEEEEECCCcCccCCCCHHHHHHHHHHhh
Confidence            46799999999999999999999987762 1122344444444444333478999999998776542      24444  


Q ss_pred             cCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCC
Q 028300           84 RGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRE  163 (211)
Q Consensus        84 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  163 (211)
                      ..+|++++|+|+++.++...    |...+..    .++|+++|+||+|+...+.+.. +...+...++++++++||+++.
T Consensus        82 ~~~d~ii~V~D~t~~~~~~~----~~~~l~~----~~~pvilv~NK~Dl~~~~~i~~-~~~~l~~~lg~~vi~~SA~~g~  152 (258)
T 3a1s_A           82 GDADLVILVADSVNPEQSLY----LLLEILE----MEKKVILAMTAIDEAKKTGMKI-DRYELQKHLGIPVVFTSSVTGE  152 (258)
T ss_dssp             SCCSEEEEEEETTSCHHHHH----HHHHHHT----TTCCEEEEEECHHHHHHTTCCB-CHHHHHHHHCSCEEECCTTTCT
T ss_pred             cCCCEEEEEeCCCchhhHHH----HHHHHHh----cCCCEEEEEECcCCCCccchHH-HHHHHHHHcCCCEEEEEeeCCc
Confidence            58999999999998754332    3333332    3799999999999854444332 3566777889999999999999


Q ss_pred             cHHHHHHHHHHHHH
Q 028300          164 NVEQCFEQLALKIM  177 (211)
Q Consensus       164 gv~~l~~~i~~~~~  177 (211)
                      |++++|++|.+.+.
T Consensus       153 gi~el~~~i~~~~~  166 (258)
T 3a1s_A          153 GLEELKEKIVEYAQ  166 (258)
T ss_dssp             THHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHhh
Confidence            99999999998765

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=99.94  E-value=3.3e-27  Score=166.96  Aligned_cols=154  Identities=21%  Similarity=0.234  Sum_probs=108.0

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccc--eeeEEEEEEECCEEEEEEEEeCCChhhhccc--------hhhh
Q 028300           13 LSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIG--VDFKIKLLTVAGKRLKLTIWDTAGQERFRTL--------TSSY   82 (211)
Q Consensus        13 ~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~--------~~~~   82 (211)
                      ..++|+++|++|+|||||+++|.+..+....+..+  .++....+.+++.  .+.+||+||+.++...        ....
T Consensus         3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~   80 (172)
T 2gj8_A            3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGM--PLHIIDTAGLREASDEVERIGIERAWQE   80 (172)
T ss_dssp             -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTE--EEEEEECCCCSCCSSHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCe--EEEEEECCCcccchhHHHHHHHHHHHHH
Confidence            45799999999999999999999876532222233  3344445556553  4789999997543211        1235


Q ss_pred             ccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCC
Q 028300           83 YRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTR  162 (211)
Q Consensus        83 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~  162 (211)
                      ++.+|++++|||+++..+++.. . |...+... ...++|+++|+||+|+.+...       .++...+.+++++||+++
T Consensus        81 ~~~ad~~i~v~D~~~~~s~~~~-~-~~~~~~~~-~~~~~p~ilv~NK~Dl~~~~~-------~~~~~~~~~~~~~SA~~g  150 (172)
T 2gj8_A           81 IEQADRVLFMVDGTTTDAVDPA-E-IWPEFIAR-LPAKLPITVVRNKADITGETL-------GMSEVNGHALIRLSARTG  150 (172)
T ss_dssp             HHTCSEEEEEEETTTCCCCSHH-H-HCHHHHHH-SCTTCCEEEEEECHHHHCCCC-------EEEEETTEEEEECCTTTC
T ss_pred             HHhCCEEEEEEECCCCCCHHHH-H-HHHHHHHh-cccCCCEEEEEECccCCcchh-------hhhhccCCceEEEeCCCC
Confidence            7899999999999998876533 3 55555443 345799999999999843211       011124568999999999


Q ss_pred             CcHHHHHHHHHHHHHh
Q 028300          163 ENVEQCFEQLALKIME  178 (211)
Q Consensus       163 ~gv~~l~~~i~~~~~~  178 (211)
                      .|++++|++|.+.+..
T Consensus       151 ~gv~~l~~~l~~~~~~  166 (172)
T 2gj8_A          151 EGVDVLRNHLKQSMGF  166 (172)
T ss_dssp             TTHHHHHHHHHHHC--
T ss_pred             CCHHHHHHHHHHHhhh
Confidence            9999999999887643

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=99.93  E-value=1.1e-26  Score=190.97  Aligned_cols=166  Identities=22%  Similarity=0.287  Sum_probs=125.1

Q ss_pred             CCceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEE------EEE--CCEEEEEEEEeCCChhhhccchh
Q 028300           10 SYDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKL------LTV--AGKRLKLTIWDTAGQERFRTLTS   80 (211)
Q Consensus        10 ~~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~------~~~--~~~~~~~~l~D~~g~~~~~~~~~   80 (211)
                      .....+||+++|.+|||||||++++.+..+ ..+.++.+.++....      +.+  .+..+.+.+||+||++.+.....
T Consensus        37 ~~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~  116 (535)
T 3dpu_A           37 VHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQ  116 (535)
T ss_dssp             BCCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCH
T ss_pred             ccccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHH
Confidence            356789999999999999999999999887 566677776665432      111  23357899999999999999999


Q ss_pred             hhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeecc
Q 028300           81 SYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAK  160 (211)
Q Consensus        81 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~  160 (211)
                      .+++++|++|+|+|+++.+.   ... |...+..+  ..+.|+++|+||+|+.+.+.+..++...++...+++++++||+
T Consensus       117 ~~l~~~d~ii~V~D~s~~~~---~~~-~~~~l~~~--~~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~  190 (535)
T 3dpu_A          117 FFMTRSSVYMLLLDSRTDSN---KHY-WLRHIEKY--GGKSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCK  190 (535)
T ss_dssp             HHHHSSEEEEEEECGGGGGG---HHH-HHHHHHHH--SSSCCEEEEECCTTTCTTCCCCHHHHHHHCGGGTTCEEECCC-
T ss_pred             HHccCCcEEEEEEeCCCchh---HHH-HHHHHHHh--CCCCCEEEEEECCCcccccccCHHHHHHHHHhcCCceEEEecC
Confidence            99999999999999987643   333 77777665  3479999999999998877788888888888888999999999


Q ss_pred             CCCcHHHHHHHHHHHHHhccc
Q 028300          161 TRENVEQCFEQLALKIMEVPS  181 (211)
Q Consensus       161 ~~~gv~~l~~~i~~~~~~~~~  181 (211)
                      ++.|++++|++|.+.+.+...
T Consensus       191 ~g~gi~eL~~~l~~~~~~~~~  211 (535)
T 3dpu_A          191 NGDGVESIAKSLKSAVLHPDS  211 (535)
T ss_dssp             ----CTTHHHHHHHHHTCTTS
T ss_pred             cccCHHHHHHHHHHHHhcccc
Confidence            999999999999998877654

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=99.93  E-value=6.6e-26  Score=166.52  Aligned_cols=166  Identities=17%  Similarity=0.102  Sum_probs=115.7

Q ss_pred             CCCceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEEC-CEEEEEEEEeCCCh----------hhhc
Q 028300            9 NSYDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVA-GKRLKLTIWDTAGQ----------ERFR   76 (211)
Q Consensus         9 ~~~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~l~D~~g~----------~~~~   76 (211)
                      ......++|+|+|.+|+|||||+++|++..+ .......+++......... .....+.||||||.          +.+.
T Consensus        24 ~~~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~  103 (223)
T 4dhe_A           24 LPPTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWE  103 (223)
T ss_dssp             SCCCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHH
T ss_pred             CCCCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHH
Confidence            3445678999999999999999999999873 4555666666655555554 44567899999994          3444


Q ss_pred             cchhhhccC---CcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCH--HHHHHHHHH--
Q 028300           77 TLTSSYYRG---AQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSR--EEGIALAKE--  149 (211)
Q Consensus        77 ~~~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~--~~~~~~~~~--  149 (211)
                      .....++..   +|++++|+|+++..+...  ..|...+..    .++|+++|+||+|+........  .........  
T Consensus       104 ~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~--~~~~~~l~~----~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~  177 (223)
T 4dhe_A          104 QLLSSYLQTRPQLCGMILMMDARRPLTELD--RRMIEWFAP----TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYR  177 (223)
T ss_dssp             HHHHHHHHHCTTEEEEEEEEETTSCCCHHH--HHHHHHHGG----GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCcCcCEEEEEEeCCCCCCHHH--HHHHHHHHh----cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhh
Confidence            455555554   788999999987543222  224444443    4789999999999865443221  122222222  


Q ss_pred             -----cCCeEEEeeccCCCcHHHHHHHHHHHHHhcc
Q 028300          150 -----HGSLFLECSAKTRENVEQCFEQLALKIMEVP  180 (211)
Q Consensus       150 -----~~~~~~~~Sa~~~~gv~~l~~~i~~~~~~~~  180 (211)
                           .+.+++++||+++.|++++|++|.+.+....
T Consensus       178 ~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~~  213 (223)
T 4dhe_A          178 DAGYAGKLTVQLFSALKRTGLDDAHALIESWLRPAA  213 (223)
T ss_dssp             HHTCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC---
T ss_pred             hcccCCCCeEEEeecCCCcCHHHHHHHHHHhcCccC
Confidence                 4568999999999999999999998876553

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=99.93  E-value=2.8e-26  Score=172.87  Aligned_cols=155  Identities=21%  Similarity=0.137  Sum_probs=115.6

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhc------cchhhhcc--
Q 028300           13 LSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFR------TLTSSYYR--   84 (211)
Q Consensus        13 ~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~------~~~~~~~~--   84 (211)
                      ..++|+++|++|+|||||+++|.+.... ....+|+++......+.. ...+.+||+||...+.      .+...++.  
T Consensus         2 ~~~kI~lvG~~nvGKSTL~n~L~g~~~~-v~~~pg~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~   79 (272)
T 3b1v_A            2 SMTEIALIGNPNSGKTSLFNLITGHNQR-VGNWPGVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQ   79 (272)
T ss_dssp             -CEEEEEECCTTSSHHHHHHHHHCCCCC-CCSSSCCCCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHCCCCc-ccCCCCCcEEEEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhcC
Confidence            4589999999999999999999987531 222346666555556666 6789999999987765      33455554  


Q ss_pred             CCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCc
Q 028300           85 GAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTREN  164 (211)
Q Consensus        85 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~g  164 (211)
                      .+|++++|+|+++.++..   . |...+..    .++|+++|+||+|+.....+. .....+...++++++++||++|.|
T Consensus        80 ~~d~vi~V~D~t~~e~~~---~-~~~~l~~----~~~p~ilv~NK~Dl~~~~~~~-~~~~~l~~~lg~~vi~~SA~~g~g  150 (272)
T 3b1v_A           80 RADSILNVVDATNLERNL---Y-LTTQLIE----TGIPVTIALNMIDVLDGQGKK-INVDKLSYHLGVPVVATSALKQTG  150 (272)
T ss_dssp             CCSEEEEEEEGGGHHHHH---H-HHHHHHH----TCSCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBTTTTBS
T ss_pred             CCCEEEEEecCCchHhHH---H-HHHHHHh----cCCCEEEEEEChhhCCcCCcH-HHHHHHHHHcCCCEEEEEccCCCC
Confidence            699999999999865432   2 4444432    489999999999985443333 234567777899999999999999


Q ss_pred             HHHHHHHHHHHHHh
Q 028300          165 VEQCFEQLALKIME  178 (211)
Q Consensus       165 v~~l~~~i~~~~~~  178 (211)
                      ++++|++|.+.+..
T Consensus       151 i~el~~~i~~~~~~  164 (272)
T 3b1v_A          151 VDQVVKKAAHTTTS  164 (272)
T ss_dssp             HHHHHHHHHHSCTT
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999999886543

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=99.92  E-value=1.8e-25  Score=167.33  Aligned_cols=150  Identities=18%  Similarity=0.150  Sum_probs=109.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhcc----------chhhhc
Q 028300           15 FKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRT----------LTSSYY   83 (211)
Q Consensus        15 ~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~----------~~~~~~   83 (211)
                      .+|+++|.+|+|||||+|+|.+..+ ....+....+.....+...+  ..+.+||+||...+..          +...++
T Consensus         2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~   79 (256)
T 3iby_A            2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGE--HLIEITDLPGVYSLVANAEGISQDEQIAAQSV   79 (256)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETT--EEEEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECC--eEEEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence            4899999999999999999998765 22333333334444445444  4789999999876653          345566


Q ss_pred             --cCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccC
Q 028300           84 --RGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKT  161 (211)
Q Consensus        84 --~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~  161 (211)
                        .++|++|+|+|+++.++...+..    .+.    ..++|+++|+||+|+.....+.. ....+...++++++++||++
T Consensus        80 ~~~~~d~vi~VvDas~~~~~~~l~~----~l~----~~~~pvilv~NK~Dl~~~~~~~~-~~~~l~~~lg~~vi~~SA~~  150 (256)
T 3iby_A           80 IDLEYDCIINVIDACHLERHLYLTS----QLF----ELGKPVVVALNMMDIAEHRGISI-DTEKLESLLGCSVIPIQAHK  150 (256)
T ss_dssp             HHSCCSEEEEEEEGGGHHHHHHHHH----HHT----TSCSCEEEEEECHHHHHHTTCEE-CHHHHHHHHCSCEEECBGGG
T ss_pred             hhCCCCEEEEEeeCCCchhHHHHHH----HHH----HcCCCEEEEEEChhcCCcCCcHH-HHHHHHHHcCCCEEEEECCC
Confidence              89999999999998655444322    222    23899999999999854333221 13446667899999999999


Q ss_pred             CCcHHHHHHHHHHH
Q 028300          162 RENVEQCFEQLALK  175 (211)
Q Consensus       162 ~~gv~~l~~~i~~~  175 (211)
                      |.|++++|++|.+.
T Consensus       151 g~gi~el~~~i~~~  164 (256)
T 3iby_A          151 NIGIPALQQSLLHC  164 (256)
T ss_dssp             TBSHHHHHHHHHTC
T ss_pred             CCCHHHHHHHHHhh
Confidence            99999999999876

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=99.92  E-value=3.6e-25  Score=169.19  Aligned_cols=164  Identities=20%  Similarity=0.186  Sum_probs=115.2

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhh--------hccchhhhc
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER--------FRTLTSSYY   83 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~--------~~~~~~~~~   83 (211)
                      -+..+|+++|.+|+|||||+|+|++..+....+.++++.............++.||||||...        +.......+
T Consensus         5 ~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l   84 (301)
T 1wf3_A            5 TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEAL   84 (301)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHT
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCCcEEEEecCccccchhhHHHHHHHHHHHHHH
Confidence            356789999999999999999999988755444444443332222223457899999999765        344556788


Q ss_pred             cCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHH-cC-CeEEEeeccC
Q 028300           84 RGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKE-HG-SLFLECSAKT  161 (211)
Q Consensus        84 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~-~~-~~~~~~Sa~~  161 (211)
                      +.+|++++|+|+++..+...  ..+...+...  ..+.|+++|+||+|+......    ....... .+ .+++++||++
T Consensus        85 ~~ad~il~VvD~~~~~~~~~--~~i~~~l~~~--~~~~p~ilV~NK~Dl~~~~~~----~~~~~~~~~~~~~~~~iSA~~  156 (301)
T 1wf3_A           85 ADVNAVVWVVDLRHPPTPED--ELVARALKPL--VGKVPILLVGNKLDAAKYPEE----AMKAYHELLPEAEPRMLSALD  156 (301)
T ss_dssp             SSCSEEEEEEETTSCCCHHH--HHHHHHHGGG--TTTSCEEEEEECGGGCSSHHH----HHHHHHHTSTTSEEEECCTTC
T ss_pred             hcCCEEEEEEECCCCCChHH--HHHHHHHHhh--cCCCCEEEEEECcccCCchHH----HHHHHHHhcCcCcEEEEeCCC
Confidence            99999999999998654432  2233444433  247999999999998654330    1222222 23 4799999999


Q ss_pred             CCcHHHHHHHHHHHHHhccchh
Q 028300          162 RENVEQCFEQLALKIMEVPSLL  183 (211)
Q Consensus       162 ~~gv~~l~~~i~~~~~~~~~~~  183 (211)
                      +.|++++|++|.+.+.+....+
T Consensus       157 g~gv~~l~~~l~~~l~~~~~~y  178 (301)
T 1wf3_A          157 ERQVAELKADLLALMPEGPFFY  178 (301)
T ss_dssp             HHHHHHHHHHHHTTCCBCCCSS
T ss_pred             CCCHHHHHHHHHHhcccCCCCC
Confidence            9999999999998776554444

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=99.92  E-value=5.5e-26  Score=171.85  Aligned_cols=157  Identities=18%  Similarity=0.147  Sum_probs=111.4

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccc----------hhhh
Q 028300           13 LSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTL----------TSSY   82 (211)
Q Consensus        13 ~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~----------~~~~   82 (211)
                      ..++|+++|.+|+|||||+|+|.+..+ .....++++.......+......+.+||+||...+...          ...+
T Consensus         2 ~~~~I~lvG~~n~GKSTLin~l~g~~~-~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~   80 (274)
T 3i8s_A            2 KKLTIGLIGNPNSGKTTLFNQLTGSRQ-RVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHY   80 (274)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHTTCE-EEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHhCCCc-ccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHHHH
Confidence            368999999999999999999998875 22223344444434333333456889999998766521          2222


Q ss_pred             --ccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeecc
Q 028300           83 --YRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAK  160 (211)
Q Consensus        83 --~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~  160 (211)
                        .+.+|++++|+|+++.+....+    ...+...    ++|+++|+||+|+.+...+.. ....+...++++++++||+
T Consensus        81 ~~~~~~d~ii~VvD~~~~~~~~~~----~~~l~~~----~~p~ivv~NK~Dl~~~~~~~~-~~~~l~~~lg~~~i~~SA~  151 (274)
T 3i8s_A           81 ILSGDADLLINVVDASNLERNLYL----TLQLLEL----GIPCIVALNMLDIAEKQNIRI-EIDALSARLGCPVIPLVST  151 (274)
T ss_dssp             HHHTCCSEEEEEEEGGGHHHHHHH----HHHHHHH----TCCEEEEEECHHHHHHTTEEE-CHHHHHHHHTSCEEECCCG
T ss_pred             HhhcCCCEEEEEecCCChHHHHHH----HHHHHhc----CCCEEEEEECccchhhhhHHH-HHHHHHHhcCCCEEEEEcC
Confidence              2799999999999986554333    3333332    799999999999854333221 2345667788999999999


Q ss_pred             CCCcHHHHHHHHHHHHHhc
Q 028300          161 TRENVEQCFEQLALKIMEV  179 (211)
Q Consensus       161 ~~~gv~~l~~~i~~~~~~~  179 (211)
                      +|.|++++|++|.+.+...
T Consensus       152 ~g~gi~el~~~i~~~~~~~  170 (274)
T 3i8s_A          152 RGRGIEALKLAIDRYKANE  170 (274)
T ss_dssp             GGHHHHHHHHHHHTCCCCC
T ss_pred             CCCCHHHHHHHHHHHHhcC
Confidence            9999999999998866543

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=99.92  E-value=2.7e-25  Score=168.02  Aligned_cols=158  Identities=19%  Similarity=0.145  Sum_probs=113.7

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhcc------chhhhc--
Q 028300           13 LSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRT------LTSSYY--   83 (211)
Q Consensus        13 ~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~------~~~~~~--   83 (211)
                      ..++|+++|++|+|||||+++|.+..+ ....+..+.+.....+...+  ..+.+||+||...+..      ....++  
T Consensus         2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~   79 (271)
T 3k53_A            2 VLKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYRE--KEFLVVDLPGIYSLTAHSIDELIARNFILD   79 (271)
T ss_dssp             CCEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETT--EEEEEEECCCCSCCCSSCHHHHHHHHHHHT
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECC--ceEEEEeCCCccccccCCHHHHHHHHhhhc
Confidence            358999999999999999999998876 22333333444444444444  4589999999877655      344555  


Q ss_pred             cCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCC
Q 028300           84 RGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRE  163 (211)
Q Consensus        84 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  163 (211)
                      .++|++++|+|+++.+   .... |...+...   ..+|+++|+||+|+.+...+... ...+...++++++++||+++.
T Consensus        80 ~~~d~vi~v~D~~~~~---~~~~-~~~~~~~~---~~~p~ilv~NK~Dl~~~~~~~~~-~~~l~~~lg~~~~~~Sa~~g~  151 (271)
T 3k53_A           80 GNADVIVDIVDSTCLM---RNLF-LTLELFEM---EVKNIILVLNKFDLLKKKGAKID-IKKMRKELGVPVIPTNAKKGE  151 (271)
T ss_dssp             TCCSEEEEEEEGGGHH---HHHH-HHHHHHHT---TCCSEEEEEECHHHHHHHTCCCC-HHHHHHHHSSCEEECBGGGTB
T ss_pred             cCCcEEEEEecCCcch---hhHH-HHHHHHhc---CCCCEEEEEEChhcCcccccHHH-HHHHHHHcCCcEEEEEeCCCC
Confidence            6899999999999853   2233 22222222   23999999999997543333222 556677789999999999999


Q ss_pred             cHHHHHHHHHHHHHhcc
Q 028300          164 NVEQCFEQLALKIMEVP  180 (211)
Q Consensus       164 gv~~l~~~i~~~~~~~~  180 (211)
                      |++++|+++.+.+....
T Consensus       152 gi~~l~~~i~~~~~~~~  168 (271)
T 3k53_A          152 GVEELKRMIALMAEGKV  168 (271)
T ss_dssp             THHHHHHHHHHHHHTCC
T ss_pred             CHHHHHHHHHHHHhccc
Confidence            99999999999876543

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=99.92  E-value=6.5e-25  Score=176.87  Aligned_cols=157  Identities=17%  Similarity=0.160  Sum_probs=97.8

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEE--EEEEECCEEEEEEEEeCCChhhhccch--------hh
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKI--KLLTVAGKRLKLTIWDTAGQERFRTLT--------SS   81 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~D~~g~~~~~~~~--------~~   81 (211)
                      ...++|+++|.+|+|||||+|+|.+.+.....+.++++...  ..+.+.  +..+.+|||||+..+...+        ..
T Consensus       231 r~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~--g~~l~liDT~G~~~~~~~ve~~gi~~~~~  308 (476)
T 3gee_A          231 SEGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHD--KTMFRLTDTAGLREAGEEIEHEGIRRSRM  308 (476)
T ss_dssp             HHCEEEEEECCTTSSHHHHHHHCC------------------CEEEEET--TEEEEEEC--------------------C
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEEC--CeEEEEEECCCCCcchhHHHHHHHHHHHh
Confidence            35689999999999999999999988654444445554443  334444  3679999999987655433        34


Q ss_pred             hccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccC
Q 028300           82 YYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKT  161 (211)
Q Consensus        82 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~  161 (211)
                      .++.+|++++|+|++++.+++.... +...+...   .++|+++|+||+|+........   ..+......+++++||++
T Consensus       309 ~~~~aD~vl~VvD~s~~~s~~~~~~-~~~~l~~l---~~~piIvV~NK~Dl~~~~~~~~---~~l~~~~~~~~i~vSAkt  381 (476)
T 3gee_A          309 KMAEADLILYLLDLGTERLDDELTE-IRELKAAH---PAAKFLTVANKLDRAANADALI---RAIADGTGTEVIGISALN  381 (476)
T ss_dssp             CCSSCSEEEEEEETTTCSSGGGHHH-HHHHHHHC---TTSEEEEEEECTTSCTTTHHHH---HHHHHHHTSCEEECBTTT
T ss_pred             hcccCCEEEEEEECCCCcchhhhHH-HHHHHHhc---CCCCEEEEEECcCCCCccchhH---HHHHhcCCCceEEEEECC
Confidence            6789999999999999877654322 33333322   2789999999999976654422   223333236899999999


Q ss_pred             CCcHHHHHHHHHHHHH
Q 028300          162 RENVEQCFEQLALKIM  177 (211)
Q Consensus       162 ~~gv~~l~~~i~~~~~  177 (211)
                      +.|++++|++|.+.+.
T Consensus       382 g~GI~eL~~~i~~~~~  397 (476)
T 3gee_A          382 GDGIDTLKQHMGDLVK  397 (476)
T ss_dssp             TBSHHHHHHHHTHHHH
T ss_pred             CCCHHHHHHHHHHHHh
Confidence            9999999999999887

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.92  E-value=2.4e-25  Score=178.67  Aligned_cols=161  Identities=19%  Similarity=0.139  Sum_probs=114.0

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEE--EEEEECCEEEEEEEEeCCCh----------hhhccch
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKI--KLLTVAGKRLKLTIWDTAGQ----------ERFRTLT   79 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~D~~g~----------~~~~~~~   79 (211)
                      +..++|+++|.+|+|||||+|+|++..+....+..+++...  ..+..++  ..+.||||||+          +.|....
T Consensus       173 ~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~e~~~~~~  250 (436)
T 2hjg_A          173 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQ--QEFVIVDTAGMRKKGKVYETTEKYSVLR  250 (436)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETT--EEEEETTHHHHTCBTTBCCCCSHHHHHH
T ss_pred             ccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECC--eEEEEEECCCcCcCccccchHHHHHHHH
Confidence            45799999999999999999999988764333344444433  2334444  35899999997          3343332


Q ss_pred             h-hhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHH-HHH----cCCe
Q 028300           80 S-SYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIAL-AKE----HGSL  153 (211)
Q Consensus        80 ~-~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~-~~~----~~~~  153 (211)
                      . ..++.+|++++|+|+++..+..+..  |...+..    .++|+++|+||+|+.+.+.+..++.... ...    .+++
T Consensus       251 ~~~~~~~ad~~llv~D~~~~~s~~~~~--~~~~~~~----~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~  324 (436)
T 2hjg_A          251 ALKAIDRSEVVAVVLDGEEGIIEQDKR--IAGYAHE----AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAP  324 (436)
T ss_dssp             HHHHHHHCSEEEEEEETTTCCCHHHHH--HHHHHHH----TTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSC
T ss_pred             HHHHHHhCCEEEEEEcCCcCCcHHHHH--HHHHHHH----cCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCC
Confidence            2 4778899999999999988877653  5555442    4799999999999976655443333222 222    3679


Q ss_pred             EEEeeccCCCcHHHHHHHHHHHHHhcc
Q 028300          154 FLECSAKTRENVEQCFEQLALKIMEVP  180 (211)
Q Consensus       154 ~~~~Sa~~~~gv~~l~~~i~~~~~~~~  180 (211)
                      ++++||++|.|++++|+++.+.+.+..
T Consensus       325 ~~~~SA~tg~~v~~l~~~i~~~~~~~~  351 (436)
T 2hjg_A          325 ILFMSALTKKRIHTLMPAIIKASENHS  351 (436)
T ss_dssp             EEECCTTTCTTGGGHHHHHHHHHHHHT
T ss_pred             EEEEecccCCCHHHHHHHHHHHHHHhh
Confidence            999999999999999999998887654

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.91  E-value=7.8e-25  Score=176.61  Aligned_cols=163  Identities=20%  Similarity=0.154  Sum_probs=117.5

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeE--EEEEEECCEEEEEEEEeCCC----------hhhhccc
Q 028300           11 YDLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFK--IKLLTVAGKRLKLTIWDTAG----------QERFRTL   78 (211)
Q Consensus        11 ~~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~D~~g----------~~~~~~~   78 (211)
                      .+..++|+++|.+|+|||||+++|.+.......+..+++..  ...+...+.  .+.+|||||          ++.+...
T Consensus       192 ~~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~  269 (456)
T 4dcu_A          192 NEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVL  269 (456)
T ss_dssp             CTTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTE--EEEETTGGGTTTBTTBCCCCSHHHHH
T ss_pred             ccccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCc--eEEEEECCCCCcCcccchHHHHHHHH
Confidence            45679999999999999999999997764322333333332  233444443  789999999          5555554


Q ss_pred             hh-hhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHc-----CC
Q 028300           79 TS-SYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEH-----GS  152 (211)
Q Consensus        79 ~~-~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~-----~~  152 (211)
                      .. .+++.+|++|+|+|+++......  ..|...+..    .++|+++|+||+|+.+.+.+..++..+.+...     .+
T Consensus       270 ~~~~~~~~ad~~llviD~~~~~~~~~--~~~~~~~~~----~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  343 (456)
T 4dcu_A          270 RALKAIDRSEVVAVVLDGEEGIIEQD--KRIAGYAHE----AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYA  343 (456)
T ss_dssp             HHHHHHHHCSEEEEEEETTTCCCHHH--HHHHHHHHH----TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTS
T ss_pred             HHHHHHhhCCEEEEEEeCCCCcCHHH--HHHHHHHHH----cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCC
Confidence            43 37789999999999998543222  225544443    47999999999999877666666666666553     57


Q ss_pred             eEEEeeccCCCcHHHHHHHHHHHHHhccc
Q 028300          153 LFLECSAKTRENVEQCFEQLALKIMEVPS  181 (211)
Q Consensus       153 ~~~~~Sa~~~~gv~~l~~~i~~~~~~~~~  181 (211)
                      +++++||++|.|++++|+++.+.+.+...
T Consensus       344 ~~~~~SA~~g~gv~~l~~~i~~~~~~~~~  372 (456)
T 4dcu_A          344 PILFMSALTKKRIHTLMPAIIKASENHSL  372 (456)
T ss_dssp             CEEECCTTTCTTGGGHHHHHHHHHHHHTC
T ss_pred             CEEEEcCCCCcCHHHHHHHHHHHHHHhcc
Confidence            89999999999999999999998866653

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.91  E-value=5.1e-25  Score=161.26  Aligned_cols=151  Identities=19%  Similarity=0.202  Sum_probs=102.7

Q ss_pred             CCCceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccC---
Q 028300            9 NSYDLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRG---   85 (211)
Q Consensus         9 ~~~~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~---   85 (211)
                      ......++|+++|++|+|||||+++|.+..+.........+.     ........+.+||+||++.+...+..++..   
T Consensus         7 ~~~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~   81 (218)
T 1nrj_B            7 KQKSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLS-----AADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAK   81 (218)
T ss_dssp             ---CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEE-----ETTGGGSSCEEEECCCCGGGTHHHHHHHHHHGG
T ss_pred             CccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceE-----EEEeeCceEEEEECCCcHHHHHHHHHHHHhccc
Confidence            345678999999999999999999999988743211111111     111144578999999999998888888777   


Q ss_pred             -CcEEEEEEECC-ChhhHHHHHHHHHHHhhhhc--cCCCccEEEEeecCCCCCCcccC------HHHHHHHHHHcCCeEE
Q 028300           86 -AQGIILVYDVT-RRETFTNLSDVWAKEVDLYS--TNQDCVKMLVGNKVDRDSERVVS------REEGIALAKEHGSLFL  155 (211)
Q Consensus        86 -~d~~i~v~d~~-~~~s~~~~~~~~~~~~~~~~--~~~~~p~viv~nK~Dl~~~~~v~------~~~~~~~~~~~~~~~~  155 (211)
                       +|++|+|+|++ +++++......+...+....  ...++|+++|+||+|+.....+.      ..+...+....+++|+
T Consensus        82 ~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  161 (218)
T 1nrj_B           82 FVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERRKKSLN  161 (218)
T ss_dssp             GEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHHhcccc
Confidence             89999999999 88888888874444433221  24689999999999997765543      3445556666677899


Q ss_pred             EeeccCCCc
Q 028300          156 ECSAKTREN  164 (211)
Q Consensus       156 ~~Sa~~~~g  164 (211)
                      ++|++++.+
T Consensus       162 ~~Sa~~~~~  170 (218)
T 1nrj_B          162 EVERKINEE  170 (218)
T ss_dssp             C--------
T ss_pred             ccccccccc
Confidence            999998865

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=99.90  E-value=1.4e-23  Score=160.57  Aligned_cols=165  Identities=20%  Similarity=0.126  Sum_probs=112.3

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChh---------hhccchhhh
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQE---------RFRTLTSSY   82 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~---------~~~~~~~~~   82 (211)
                      -+..+|+++|++|+|||||+|+|++..+....+.++++.......+......+.+|||||+.         .+.......
T Consensus         6 ~r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~   85 (301)
T 1ega_A            6 SYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSS   85 (301)
T ss_dssp             CEEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSC
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECCeeEEEEECcCCCccchhhHHHHHHHHHHHH
Confidence            35568999999999999999999988764333333333322222222234678999999986         233445677


Q ss_pred             ccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCC-eEEEeeccC
Q 028300           83 YRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGS-LFLECSAKT  161 (211)
Q Consensus        83 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~  161 (211)
                      ++.+|++++|+|+++ -+  .....+...+.    ..+.|+++++||+|+.............+...+++ .++++||++
T Consensus        86 l~~~D~vl~Vvd~~~-~~--~~~~~i~~~l~----~~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~  158 (301)
T 1ega_A           86 IGDVELVIFVVEGTR-WT--PDDEMVLNKLR----EGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAET  158 (301)
T ss_dssp             CCCEEEEEEEEETTC-CC--HHHHHHHHHHH----SSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTT
T ss_pred             HhcCCEEEEEEeCCC-CC--HHHHHHHHHHH----hcCCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceEEEECCC
Confidence            889999999999977 22  22221222222    35789999999999865222222334444444565 699999999


Q ss_pred             CCcHHHHHHHHHHHHHhccchh
Q 028300          162 RENVEQCFEQLALKIMEVPSLL  183 (211)
Q Consensus       162 ~~gv~~l~~~i~~~~~~~~~~~  183 (211)
                      +.|+++++++|.+.+.+....+
T Consensus       159 g~~v~~l~~~i~~~l~~~~~~~  180 (301)
T 1ega_A          159 GLNVDTIAAIVRKHLPEATHHF  180 (301)
T ss_dssp             TTTHHHHHHHHHTTCCBCCCSS
T ss_pred             CCCHHHHHHHHHHhCCcCCCCC
Confidence            9999999999998776554433

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=99.90  E-value=2.9e-23  Score=162.54  Aligned_cols=162  Identities=18%  Similarity=0.161  Sum_probs=115.6

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhhCCCC-CCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhc---------cchhh
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFISSSVD-DLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFR---------TLTSS   81 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~---------~~~~~   81 (211)
                      ...++|+++|.+|||||||+++|.+..+. ...+..........+...  ...+.+|||||.....         .....
T Consensus       165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~  242 (357)
T 2e87_A          165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDG--YFRYQIIDTPGLLDRPISERNEIEKQAILA  242 (357)
T ss_dssp             SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEET--TEEEEEEECTTTSSSCSTTSCHHHHHHHHG
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEec--CceEEEEeCCCccccchhhhhHHHHHHHHH
Confidence            46789999999999999999999987651 111111112222222222  4578999999974421         11223


Q ss_pred             hccCCcEEEEEEECCChh--hHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeec
Q 028300           82 YYRGAQGIILVYDVTRRE--TFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSA  159 (211)
Q Consensus        82 ~~~~~d~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa  159 (211)
                      ....+|++++|+|+++..  +++.... |...+....  .++|+++|+||+|+.....+  ++...++...+++++++||
T Consensus       243 ~~~~ad~illV~D~s~~~~~~~~~~~~-~~~~i~~~~--~~~piilV~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~iSA  317 (357)
T 2e87_A          243 LRYLGNLIIYIFDPSEHCGFPLEEQIH-LFEEVHGEF--KDLPFLVVINKIDVADEENI--KRLEKFVKEKGLNPIKISA  317 (357)
T ss_dssp             GGGTCSEEEEEECTTCTTSSCHHHHHH-HHHHHHHHT--TTSCEEEEECCTTTCCHHHH--HHHHHHHHHTTCCCEECBT
T ss_pred             HHhcCCEEEEEEeCCccccCCHHHHHH-HHHHHHHhc--CCCCEEEEEECcccCChHHH--HHHHHHHHhcCCCeEEEeC
Confidence            445789999999999876  6676666 666665432  28999999999999655433  3455566677889999999


Q ss_pred             cCCCcHHHHHHHHHHHHHhcc
Q 028300          160 KTRENVEQCFEQLALKIMEVP  180 (211)
Q Consensus       160 ~~~~gv~~l~~~i~~~~~~~~  180 (211)
                      ++|.|++++|++|.+.+....
T Consensus       318 ~~g~gi~~l~~~i~~~l~~~~  338 (357)
T 2e87_A          318 LKGTGIDLVKEEIIKTLRPLA  338 (357)
T ss_dssp             TTTBTHHHHHHHHHHHHHHHH
T ss_pred             CCCcCHHHHHHHHHHHHHHHH
Confidence            999999999999999886653

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=99.90  E-value=5.5e-24  Score=171.60  Aligned_cols=153  Identities=20%  Similarity=0.222  Sum_probs=111.3

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceee--EEEEEEECCEEEEEEEEeCCChh-hhcc--------chhh
Q 028300           13 LSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDF--KIKLLTVAGKRLKLTIWDTAGQE-RFRT--------LTSS   81 (211)
Q Consensus        13 ~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~D~~g~~-~~~~--------~~~~   81 (211)
                      ..++|+++|.+|+|||||+|+|.+.++....+.++++.  ....+.+++  ..+.+|||||.. ++..        ....
T Consensus       242 ~~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g--~~~~l~DTaG~~~~~~~~ve~~gi~~~~~  319 (482)
T 1xzp_A          242 RGLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTLQ  319 (482)
T ss_dssp             HCEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHHH
T ss_pred             CCCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCC--eEEEEEECCCccccchhhHHHHHHHHHHH
Confidence            34899999999999999999999887543333344333  333444544  568999999987 5432        2345


Q ss_pred             hccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccC
Q 028300           82 YYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKT  161 (211)
Q Consensus        82 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~  161 (211)
                      .++.+|++|+|+|++++.++++..  +...+      .++|+++|+||+|+.+.  +..++...+. ..+.+++++||++
T Consensus       320 ~~~~aD~vl~VvD~s~~~s~~~~~--il~~l------~~~piivV~NK~DL~~~--~~~~~~~~~~-~~~~~~i~iSAkt  388 (482)
T 1xzp_A          320 EIEKADIVLFVLDASSPLDEEDRK--ILERI------KNKRYLVVINKVDVVEK--INEEEIKNKL-GTDRHMVKISALK  388 (482)
T ss_dssp             HHHHCSEEEEEEETTSCCCHHHHH--HHHHH------TTSSEEEEEEECSSCCC--CCHHHHHHHH-TCSTTEEEEEGGG
T ss_pred             HhhcccEEEEEecCCCCCCHHHHH--HHHHh------cCCCEEEEEECcccccc--cCHHHHHHHh-cCCCcEEEEECCC
Confidence            788999999999999887776543  22222      37899999999999653  3434444332 2346899999999


Q ss_pred             CCcHHHHHHHHHHHHHh
Q 028300          162 RENVEQCFEQLALKIME  178 (211)
Q Consensus       162 ~~gv~~l~~~i~~~~~~  178 (211)
                      +.|+++++++|.+.+..
T Consensus       389 g~Gi~eL~~~l~~~~~~  405 (482)
T 1xzp_A          389 GEGLEKLEESIYRETQE  405 (482)
T ss_dssp             TCCHHHHHHHHHHHTHH
T ss_pred             CCCHHHHHHHHHHHHhh
Confidence            99999999999997663

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=99.90  E-value=4.4e-23  Score=153.11  Aligned_cols=167  Identities=15%  Similarity=0.185  Sum_probs=104.4

Q ss_pred             CCCceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccce--eeEEEEEEECCEEEEEEEEeCCCh-----------hh
Q 028300            9 NSYDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGV--DFKIKLLTVAGKRLKLTIWDTAGQ-----------ER   74 (211)
Q Consensus         9 ~~~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~l~D~~g~-----------~~   74 (211)
                      ......++|+++|++|+|||||+++|++..+ ....+..++  ......+.+.+  ..+.||||||.           ..
T Consensus        24 ~~~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~  101 (239)
T 3lxx_A           24 EPRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKE--TELVVVDTPGIFDTEVPNAETSKE  101 (239)
T ss_dssp             ----CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETT--EEEEEEECCSCC-----CHHHHHH
T ss_pred             CCCCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCC--ceEEEEECCCccCCCCCHHHHHHH
Confidence            3446789999999999999999999998877 333332222  23333334443  56899999993           23


Q ss_pred             hccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhh-hhccCCCccEEEEeecCCCCCCcccC------HHHHHHHH
Q 028300           75 FRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVD-LYSTNQDCVKMLVGNKVDRDSERVVS------REEGIALA  147 (211)
Q Consensus        75 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~-~~~~~~~~p~viv~nK~Dl~~~~~v~------~~~~~~~~  147 (211)
                      +...+...++.+|++|+|+|+++..... . . +...+. .+......|+++|+||+|+.....+.      .+....+.
T Consensus       102 ~~~~~~~~~~~~~~~l~v~d~~~~~~~~-~-~-~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~  178 (239)
T 3lxx_A          102 IIRCILLTSPGPHALLLVVPLGRYTEEE-H-K-ATEKILKMFGERARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLM  178 (239)
T ss_dssp             HHHHHHHTTTCCSEEEEEEETTCCSSHH-H-H-HHHHHHHHHHHHHGGGEEEEEECGGGC------------CHHHHHHH
T ss_pred             HHHHHHhcCCCCcEEEEEeeCCCCCHHH-H-H-HHHHHHHHhhhhccceEEEEEeCCccCCcccHHHHHHhchHHHHHHH
Confidence            4444555667889999999987644311 1 1 222221 11112346999999999986554433      13456677


Q ss_pred             HHcCCeEEEeeccCC-----CcHHHHHHHHHHHHHhcc
Q 028300          148 KEHGSLFLECSAKTR-----ENVEQCFEQLALKIMEVP  180 (211)
Q Consensus       148 ~~~~~~~~~~Sa~~~-----~gv~~l~~~i~~~~~~~~  180 (211)
                      ...+..|+.++...+     .++.++|..+.+.+.+..
T Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~~~  216 (239)
T 3lxx_A          179 DIFGDRYCALNNKATGAEQEAQRAQLLGLIQRVVRENK  216 (239)
T ss_dssp             HHHSSSEEECCTTCCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred             HHcCCEEEEEECCCCccccHHHHHHHHHHHHHHHHHcC
Confidence            778888888876643     789999999888776643

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=99.90  E-value=3e-25  Score=176.09  Aligned_cols=159  Identities=20%  Similarity=0.149  Sum_probs=111.5

Q ss_pred             CCceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccce--eeEEEEEEECCEEEEEEEEeCCChhhhccc-------hh
Q 028300           10 SYDLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGV--DFKIKLLTVAGKRLKLTIWDTAGQERFRTL-------TS   80 (211)
Q Consensus        10 ~~~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~-------~~   80 (211)
                      .....++|+|+|.+|+|||||+++|++..+.......++  +.....+.+... ..+.+|||||+.++..+       ..
T Consensus        30 ~~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~-~~l~liDTpG~~d~~~l~~~~~~~~~  108 (423)
T 3qq5_A           30 DAGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPI-GPVTLVDTPGLDDVGELGRLRVEKAR  108 (423)
T ss_dssp             --CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTT-EEEEEEECSSTTCCCTTCCCCHHHHH
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCC-CeEEEEECcCCCcccchhHHHHHHHH
Confidence            345678999999999999999999998876433333343  333334444433 27899999998876544       34


Q ss_pred             hhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeecc
Q 028300           81 SYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAK  160 (211)
Q Consensus        81 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~  160 (211)
                      .++.++|++|+|+|++.....   .. |...+...    ++|+++|+||+|+...+..  +....+...++++++++||+
T Consensus       109 ~~l~~aD~vllVvD~~~~~~~---~~-~l~~l~~~----~~piIvV~NK~Dl~~~~~~--~~~~~l~~~~g~~v~~vSAk  178 (423)
T 3qq5_A          109 RVFYRADCGILVTDSAPTPYE---DD-VVNLFKEM----EIPFVVVVNKIDVLGEKAE--ELKGLYESRYEAKVLLVSAL  178 (423)
T ss_dssp             HHHTSCSEEEEECSSSCCHHH---HH-HHHHHHHT----TCCEEEECCCCTTTTCCCT--HHHHHSSCCTTCCCCCCSSC
T ss_pred             HHHhcCCEEEEEEeCCChHHH---HH-HHHHHHhc----CCCEEEEEeCcCCCCccHH--HHHHHHHHHcCCCEEEEECC
Confidence            578899999999999433222   22 55555543    8999999999999766544  44455555678899999999


Q ss_pred             CCCcHHHHHHHHHHHHHhc
Q 028300          161 TRENVEQCFEQLALKIMEV  179 (211)
Q Consensus       161 ~~~gv~~l~~~i~~~~~~~  179 (211)
                      ++.|++++|++|.+.+.+.
T Consensus       179 tg~gI~eL~~~L~~~l~~~  197 (423)
T 3qq5_A          179 QKKGFDDIGKTISEILPGD  197 (423)
T ss_dssp             CTTSTTTHHHHHHHHSCCC
T ss_pred             CCCCHHHHHHHHHHhhhhh
Confidence            9999999999999988554

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.89  E-value=1.7e-23  Score=168.10  Aligned_cols=153  Identities=24%  Similarity=0.245  Sum_probs=100.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeE--EEEEEECCEEEEEEEEeCCChhh---------hccchhhhc
Q 028300           15 FKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFK--IKLLTVAGKRLKLTIWDTAGQER---------FRTLTSSYY   83 (211)
Q Consensus        15 ~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~D~~g~~~---------~~~~~~~~~   83 (211)
                      .+|+++|.||||||||+|+|.+........+++++..  ...+.+.+  ..+.+|||||...         +...+..++
T Consensus         2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~   79 (439)
T 1mky_A            2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYG--KTFKLVDTCGVFDNPQDIISQKMKEVTLNMI   79 (439)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETT--EEEEEEECTTTTSSGGGCCCHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECC--eEEEEEECCCccccccchHHHHHHHHHHHHH
Confidence            3799999999999999999998876544555565443  33444444  4578999999653         234456688


Q ss_pred             cCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHH-HHHHHHcCC-eEEEeeccC
Q 028300           84 RGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEG-IALAKEHGS-LFLECSAKT  161 (211)
Q Consensus        84 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~-~~~~~~~~~-~~~~~Sa~~  161 (211)
                      +.+|++++|+|+++..+..+..  +...+..    .++|+++|+||+|+...  . ..+. .++. .++. +++++||++
T Consensus        80 ~~ad~il~V~D~~~~~~~~d~~--i~~~l~~----~~~p~ilv~NK~D~~~~--~-~~~~~~~~~-~lg~~~~~~iSA~~  149 (439)
T 1mky_A           80 READLVLFVVDGKRGITKEDES--LADFLRK----STVDTILVANKAENLRE--F-EREVKPELY-SLGFGEPIPVSAEH  149 (439)
T ss_dssp             TTCSEEEEEEETTTCCCHHHHH--HHHHHHH----HTCCEEEEEESCCSHHH--H-HHHTHHHHG-GGSSCSCEECBTTT
T ss_pred             HhCCEEEEEEECCCCCCHHHHH--HHHHHHH----cCCCEEEEEeCCCCccc--c-HHHHHHHHH-hcCCCCEEEEeccC
Confidence            9999999999998754433311  2222332    37899999999997422  1 1222 2332 4566 689999999


Q ss_pred             CCcHHHHHHHHHHHHHhc
Q 028300          162 RENVEQCFEQLALKIMEV  179 (211)
Q Consensus       162 ~~gv~~l~~~i~~~~~~~  179 (211)
                      |.|+++++++|.+.+.+.
T Consensus       150 g~gv~~L~~~i~~~l~~~  167 (439)
T 1mky_A          150 NINLDTMLETIIKKLEEK  167 (439)
T ss_dssp             TBSHHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHhcccc
Confidence            999999999999988653

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=99.89  E-value=1.2e-23  Score=162.88  Aligned_cols=158  Identities=22%  Similarity=0.276  Sum_probs=114.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCCC--CCCC-CccceeeEEEEEEECCEEEEEEEEeCCChhh----hccchhhhcc---C
Q 028300           16 KILLIGDSGVGKSSLLVSFISSSV--DDLS-PTIGVDFKIKLLTVAGKRLKLTIWDTAGQER----FRTLTSSYYR---G   85 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~----~~~~~~~~~~---~   85 (211)
                      +|+|+|.+|||||||+++|++...  ..+. .|...+..  .+.+.+ ...+.+||+||..+    +..+...+++   .
T Consensus       160 ~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g--~v~~~~-~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~  236 (342)
T 1lnz_A          160 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLG--MVETDD-GRSFVMADLPGLIEGAHQGVGLGHQFLRHIER  236 (342)
T ss_dssp             CEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEE--EEECSS-SCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHH
T ss_pred             eeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEE--EEEeCC-CceEEEecCCCCcccccccchhHHHHHHHHHh
Confidence            588999999999999999998764  2221 22222222  233332 24789999999643    3334455544   5


Q ss_pred             CcEEEEEEECCC---hhhHHHHHHHHHHHhhhhcc-CCCccEEEEeecCCCCCCcccCHHHHHHHHHHcC--CeEEEeec
Q 028300           86 AQGIILVYDVTR---RETFTNLSDVWAKEVDLYST-NQDCVKMLVGNKVDRDSERVVSREEGIALAKEHG--SLFLECSA  159 (211)
Q Consensus        86 ~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~-~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~--~~~~~~Sa  159 (211)
                      +|++|+|+|+++   .++++++.. |...+..+.. ..++|+++|+||+|+....    +....+...+.  .+++++||
T Consensus       237 ~d~ll~VvD~s~~~~~~~~~~~~~-~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~----e~~~~l~~~l~~~~~v~~iSA  311 (342)
T 1lnz_A          237 TRVIVHVIDMSGLEGRDPYDDYLT-INQELSEYNLRLTERPQIIVANKMDMPEAA----ENLEAFKEKLTDDYPVFPISA  311 (342)
T ss_dssp             CCEEEEEEESSCSSCCCHHHHHHH-HHHHHHHSCSSTTTSCBCBEEECTTSTTHH----HHHHHHHHHCCSCCCBCCCSS
T ss_pred             ccEEEEEEECCcccccChHHHHHH-HHHHHHHhhhhhcCCCEEEEEECccCCCCH----HHHHHHHHHhhcCCCEEEEEC
Confidence            999999999998   778888876 7777776522 3589999999999986432    23445555555  68999999


Q ss_pred             cCCCcHHHHHHHHHHHHHhccc
Q 028300          160 KTRENVEQCFEQLALKIMEVPS  181 (211)
Q Consensus       160 ~~~~gv~~l~~~i~~~~~~~~~  181 (211)
                      +++.|+++++.+|.+.+.+.+.
T Consensus       312 ~tg~gi~eL~~~l~~~l~~~~~  333 (342)
T 1lnz_A          312 VTREGLRELLFEVANQLENTPE  333 (342)
T ss_dssp             CCSSTTHHHHHHHHHHHTSCCC
T ss_pred             CCCcCHHHHHHHHHHHHhhCcc
Confidence            9999999999999998876543

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.89  E-value=3.6e-24  Score=171.82  Aligned_cols=155  Identities=17%  Similarity=0.137  Sum_probs=104.9

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChh--------hhccchhhhccC
Q 028300           14 SFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQE--------RFRTLTSSYYRG   85 (211)
Q Consensus        14 ~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~--------~~~~~~~~~~~~   85 (211)
                      ..+|+++|.+|||||||+|+|.+..+..+.+++|+++..........+..+.+|||||+.        .+...+..+++.
T Consensus         3 ~~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~   82 (436)
T 2hjg_A            3 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDE   82 (436)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHHh
Confidence            368999999999999999999988877777888888776666666666789999999975        455667778899


Q ss_pred             CcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCC-eEEEeeccCCCc
Q 028300           86 AQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGS-LFLECSAKTREN  164 (211)
Q Consensus        86 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~g  164 (211)
                      +|++|+|+|+.+..+..+..  +...+.    ..++|+++|+||+|+......    ..++. .++. +++++||++|.|
T Consensus        83 ad~il~vvD~~~~~~~~d~~--~~~~l~----~~~~pvilv~NK~D~~~~~~~----~~~~~-~lg~~~~~~iSA~~g~g  151 (436)
T 2hjg_A           83 ADVIIFMVNGREGVTAADEE--VAKILY----RTKKPVVLAVNKLDNTEMRAN----IYDFY-SLGFGEPYPISGTHGLG  151 (436)
T ss_dssp             CSEEEEEEETTTCSCHHHHH--HHHHHT----TCCSCEEEEEECCCC-----C----CCSSG-GGSSCCCEECBTTTTBT
T ss_pred             CCEEEEEEeCCCCCCHHHHH--HHHHHH----HcCCCEEEEEECccCccchhh----HHHHH-HcCCCCeEEEeCcCCCC
Confidence            99999999999866544321  334343    358899999999998643211    11122 3454 689999999999


Q ss_pred             HHHHHHHHHHHHHhc
Q 028300          165 VEQCFEQLALKIMEV  179 (211)
Q Consensus       165 v~~l~~~i~~~~~~~  179 (211)
                      ++++++++.+.+.+.
T Consensus       152 v~~L~~~i~~~l~~~  166 (436)
T 2hjg_A          152 LGDLLDAVAEHFKNI  166 (436)
T ss_dssp             HHHHHHHHHHTGGGC
T ss_pred             hHHHHHHHHHhcCcc
Confidence            999999999887643

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...

Probab=99.89  E-value=4.3e-23  Score=160.39  Aligned_cols=118  Identities=19%  Similarity=0.171  Sum_probs=96.3

Q ss_pred             EEEEEEEeCCChhhhccchhhhccCCcEEEEEEECCC----------hhhHHHHHHHHHHHhhhhccCCCccEEEEeecC
Q 028300           61 RLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTR----------RETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKV  130 (211)
Q Consensus        61 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~  130 (211)
                      .+.+.+||++|+..++..|..++++++++|+|||+++          .+++.+... |...+.......++|+++++||+
T Consensus       192 ~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~-~~~~i~~~~~~~~~piiLv~NK~  270 (353)
T 1cip_A          192 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMK-LFDSICNNKWFTDTSIILFLNKK  270 (353)
T ss_dssp             TEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHH-HHHHHHTCGGGTTSEEEEEEECH
T ss_pred             CeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHH-HHHHHHcCccccCCcEEEEEECc
Confidence            5789999999999999999999999999999999999          567888888 44444333234679999999999


Q ss_pred             CCCCCc---------------ccCHHHHHHHHH-----------HcCCeEEEeeccCCCcHHHHHHHHHHHHHhc
Q 028300          131 DRDSER---------------VVSREEGIALAK-----------EHGSLFLECSAKTRENVEQCFEQLALKIMEV  179 (211)
Q Consensus       131 Dl~~~~---------------~v~~~~~~~~~~-----------~~~~~~~~~Sa~~~~gv~~l~~~i~~~~~~~  179 (211)
                      |+...+               .+..+++..++.           ..++.+++|||+++.||+++|+++.+.+...
T Consensus       271 DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i~~~  345 (353)
T 1cip_A          271 DLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKN  345 (353)
T ss_dssp             HHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             CchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHHHHH
Confidence            984322               356677777776           3467899999999999999999999988654

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=99.89  E-value=1.8e-22  Score=160.38  Aligned_cols=166  Identities=15%  Similarity=0.088  Sum_probs=114.5

Q ss_pred             CCceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEE-------EE------------EECCEEEEEEEEeCC
Q 028300           10 SYDLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIK-------LL------------TVAGKRLKLTIWDTA   70 (211)
Q Consensus        10 ~~~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~-------~~------------~~~~~~~~~~l~D~~   70 (211)
                      .....++|+++|++++|||||+++|.+............+....       .+            ........+.|||+|
T Consensus         4 ~~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtP   83 (403)
T 3sjy_A            4 KVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAP   83 (403)
T ss_dssp             CCCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECC
T ss_pred             ccCCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECC
Confidence            45668999999999999999999999754322111100000000       00            001133789999999


Q ss_pred             ChhhhccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccC--HHHHHHHHH
Q 028300           71 GQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVS--REEGIALAK  148 (211)
Q Consensus        71 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~--~~~~~~~~~  148 (211)
                      |+..|.......+..+|++++|+|+++..++..... +...+...   ...|+++|+||+|+.+.....  .++...+..
T Consensus        84 Gh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~-~~~~~~~~---~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~  159 (403)
T 3sjy_A           84 GHEVLMATMLSGAALMDGAILVVAANEPFPQPQTRE-HFVALGII---GVKNLIIVQNKVDVVSKEEALSQYRQIKQFTK  159 (403)
T ss_dssp             CCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHH-HHHHHHHH---TCCCEEEEEECGGGSCHHHHHHHHHHHHHHHT
T ss_pred             CcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHH-HHHHHHHc---CCCCEEEEEECccccchHHHHHHHHHHHHHHH
Confidence            999998888889999999999999998765666655 44444433   235899999999986543221  112222222


Q ss_pred             H---cCCeEEEeeccCCCcHHHHHHHHHHHHHhc
Q 028300          149 E---HGSLFLECSAKTRENVEQCFEQLALKIMEV  179 (211)
Q Consensus       149 ~---~~~~~~~~Sa~~~~gv~~l~~~i~~~~~~~  179 (211)
                      .   .+++++++||++|.|+++++++|.+.+...
T Consensus       160 ~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~~~  193 (403)
T 3sjy_A          160 GTWAENVPIIPVSALHKINIDSLIEGIEEYIKTP  193 (403)
T ss_dssp             TSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCCC
T ss_pred             hhCCCCCEEEEEECCCCcChHHHHHHHHHhCCCC
Confidence            2   156899999999999999999998876543

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=99.88  E-value=2.2e-22  Score=162.86  Aligned_cols=158  Identities=16%  Similarity=0.150  Sum_probs=110.3

Q ss_pred             CCCceeeEEEEEcCCCCcHHHHHHHHhhCC----CCC--CCCccceeeEE--EEEEECCEEEEEEEEeCCChhhhccchh
Q 028300            9 NSYDLSFKILLIGDSGVGKSSLLVSFISSS----VDD--LSPTIGVDFKI--KLLTVAGKRLKLTIWDTAGQERFRTLTS   80 (211)
Q Consensus         9 ~~~~~~~~I~v~G~~~~GKssli~~l~~~~----~~~--~~~~~~~~~~~--~~~~~~~~~~~~~l~D~~g~~~~~~~~~   80 (211)
                      ......++|+++|++++|||||+++|.+..    .+.  .....+.+...  ..+..+  ...+.|||+||+++|.....
T Consensus        14 ~~~m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~--~~~i~iiDtPGh~~~~~~~~   91 (482)
T 1wb1_A           14 HMDFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLE--NYRITLVDAPGHADLIRAVV   91 (482)
T ss_dssp             CCCCEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEET--TEEEEECCCSSHHHHHHHHH
T ss_pred             hhcCCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEEC--CEEEEEEECCChHHHHHHHH
Confidence            334567999999999999999999999876    211  11112222211  122333  36799999999999988888


Q ss_pred             hhccCCcEEEEEEECCC---hhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCccc--CHHHHHHHHHHc----C
Q 028300           81 SYYRGAQGIILVYDVTR---RETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVV--SREEGIALAKEH----G  151 (211)
Q Consensus        81 ~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v--~~~~~~~~~~~~----~  151 (211)
                      ..+..+|++|+|+|+++   +++.+.+.     .+.    ..++|.++|+||+|+.+....  ..++...++...    +
T Consensus        92 ~~~~~aD~~ilVvda~~g~~~qt~e~l~-----~~~----~~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~  162 (482)
T 1wb1_A           92 SAADIIDLALIVVDAKEGPKTQTGEHML-----ILD----HFNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKN  162 (482)
T ss_dssp             HHTTSCCEEEEEEETTTCSCHHHHHHHH-----HHH----HTTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGG
T ss_pred             HHHhhCCEEEEEEecCCCccHHHHHHHH-----HHH----HcCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhccccc
Confidence            89999999999999998   44444433     222    236888999999999653221  123344444444    5


Q ss_pred             CeEEEeeccCCCcHHHHHHHHHHHHH
Q 028300          152 SLFLECSAKTRENVEQCFEQLALKIM  177 (211)
Q Consensus       152 ~~~~~~Sa~~~~gv~~l~~~i~~~~~  177 (211)
                      ++++++||++|.|+++++++|.+.+.
T Consensus       163 ~~ii~vSA~~g~gI~~L~~~L~~~i~  188 (482)
T 1wb1_A          163 SSIIPISAKTGFGVDELKNLIITTLN  188 (482)
T ss_dssp             CCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             ceEEEEECcCCCCHHHHHHHHHHhhc
Confidence            78999999999999999999998775

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=99.88  E-value=1e-21  Score=157.38  Aligned_cols=157  Identities=18%  Similarity=0.212  Sum_probs=106.7

Q ss_pred             CCCceeeEEEEEcCCCCcHHHHHHHHhhCCC--C----------------------------CCCCccceeeEEEEEEEC
Q 028300            9 NSYDLSFKILLIGDSGVGKSSLLVSFISSSV--D----------------------------DLSPTIGVDFKIKLLTVA   58 (211)
Q Consensus         9 ~~~~~~~~I~v~G~~~~GKssli~~l~~~~~--~----------------------------~~~~~~~~~~~~~~~~~~   58 (211)
                      ......++|+++|++++|||||+++|+...-  .                            ......|.+.......+.
T Consensus        12 ~~~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~   91 (439)
T 3j2k_7           12 APKKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFE   91 (439)
T ss_pred             CCCCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEe
Confidence            3456779999999999999999999965421  0                            011123455555555555


Q ss_pred             CEEEEEEEEeCCChhhhccchhhhccCCcEEEEEEECCChhh---HH---HHHHHHHHHhhhhccCCCcc-EEEEeecCC
Q 028300           59 GKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRET---FT---NLSDVWAKEVDLYSTNQDCV-KMLVGNKVD  131 (211)
Q Consensus        59 ~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~~~p-~viv~nK~D  131 (211)
                      ..+..+.||||||+.+|.......++.+|++|+|+|+++...   ++   .... ....+.    ..++| +++++||+|
T Consensus        92 ~~~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e-~l~~~~----~~~v~~iIvviNK~D  166 (439)
T 3j2k_7           92 TEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTRE-HAMLAK----TAGVKHLIVLINKMD  166 (439)
T ss_pred             cCCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHH-HHHHHH----HcCCCeEEEEeecCC
Confidence            566789999999999998888888999999999999998531   11   1111 111111    23566 999999999


Q ss_pred             CCCCc--cc----CHHHHHHHHHHc------CCeEEEeeccCCCcHHHHHH
Q 028300          132 RDSER--VV----SREEGIALAKEH------GSLFLECSAKTRENVEQCFE  170 (211)
Q Consensus       132 l~~~~--~v----~~~~~~~~~~~~------~~~~~~~Sa~~~~gv~~l~~  170 (211)
                      +....  +.    ...+...++...      .++++++||++|.|+.++++
T Consensus       167 l~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~  217 (439)
T 3j2k_7          167 DPTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD  217 (439)
T ss_pred             CcccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence            85321  11    112233344443      35799999999999999765

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=99.88  E-value=2e-23  Score=167.63  Aligned_cols=155  Identities=19%  Similarity=0.200  Sum_probs=102.6

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcccee--eEEEEEEECCEEEEEEEEeCCChhhhccch--------hh
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVD--FKIKLLTVAGKRLKLTIWDTAGQERFRTLT--------SS   81 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~--------~~   81 (211)
                      ...++|+++|++|+|||||+|+|++..+.......+++  .....+.+++  ..+.+|||||..++...+        ..
T Consensus       222 r~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~v~liDT~G~~~~~~~ve~~gi~~~~~  299 (462)
T 3geh_A          222 RTGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGG--IPVQVLDTAGIRETSDQVEKIGVERSRQ  299 (462)
T ss_dssp             HHCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETT--EEEEECC--------------------C
T ss_pred             cCCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECC--EEEEEEECCccccchhHHHHHHHHHHhh
Confidence            35689999999999999999999987653333333332  2223344444  567999999976544322        33


Q ss_pred             hccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccC
Q 028300           82 YYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKT  161 (211)
Q Consensus        82 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~  161 (211)
                      .+..+|++++|+|++++.+.... . |...+.      ..|+++|+||+|+.....+.  ....+.  ...+++++||++
T Consensus       300 ~~~~aD~vl~VvD~s~~~~~~~~-~-i~~~l~------~~piivV~NK~Dl~~~~~~~--~~~~~~--~~~~~i~iSAkt  367 (462)
T 3geh_A          300 AANTADLVLLTIDAATGWTTGDQ-E-IYEQVK------HRPLILVMNKIDLVEKQLIT--SLEYPE--NITQIVHTAAAQ  367 (462)
T ss_dssp             CCCSCSEEEEEEETTTCSCHHHH-H-HHHHHT------TSCEEEEEECTTSSCGGGST--TCCCCT--TCCCEEEEBTTT
T ss_pred             hhhcCCEEEEEeccCCCCCHHHH-H-HHHhcc------CCcEEEEEECCCCCcchhhH--HHHHhc--cCCcEEEEECCC
Confidence            67899999999999987665542 2 444432      36999999999997654433  111111  356799999999


Q ss_pred             CCcHHHHHHHHHHHHHhcc
Q 028300          162 RENVEQCFEQLALKIMEVP  180 (211)
Q Consensus       162 ~~gv~~l~~~i~~~~~~~~  180 (211)
                      +.|+++++++|.+.+....
T Consensus       368 g~Gi~eL~~~i~~~~~~~~  386 (462)
T 3geh_A          368 KQGIDSLETAILEIVQTGK  386 (462)
T ss_dssp             TBSHHHHHHHHHHHHTTSS
T ss_pred             CCCHHHHHHHHHHHHhccC
Confidence            9999999999999887654

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=99.88  E-value=2.7e-22  Score=150.69  Aligned_cols=165  Identities=16%  Similarity=0.170  Sum_probs=104.1

Q ss_pred             CCceeeEEEEEcCCCCcHHHHHHHHhhCCC-C-CCCCc-cceeeEEEEEEECCEEEEEEEEeCCChhhhccc--------
Q 028300           10 SYDLSFKILLIGDSGVGKSSLLVSFISSSV-D-DLSPT-IGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTL--------   78 (211)
Q Consensus        10 ~~~~~~~I~v~G~~~~GKssli~~l~~~~~-~-~~~~~-~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~--------   78 (211)
                      +....++|+|+|++|||||||+++|++... . ...++ .............  +..+.||||||+..+...        
T Consensus        18 ~~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~i~iiDTpG~~~~~~~~~~~~~~i   95 (260)
T 2xtp_A           18 ASRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWG--NREIVIIDTPDMFSWKDHCEALYKEV   95 (260)
T ss_dssp             ---CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEET--TEEEEEEECCGGGGSSCCCHHHHHHH
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeC--CCEEEEEECcCCCCCCCCHHHHHHHH
Confidence            345679999999999999999999998773 2 22222 2222222233333  356899999997654322        


Q ss_pred             ---hhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhh-ccCCCccEEEEee-cCCCCCCcccCH-------HHHHHH
Q 028300           79 ---TSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLY-STNQDCVKMLVGN-KVDRDSERVVSR-------EEGIAL  146 (211)
Q Consensus        79 ---~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~p~viv~n-K~Dl~~~~~v~~-------~~~~~~  146 (211)
                         ....++.+|++|+|+|+++.......   +...+... ......|.++++| |+|+.... +..       .+...+
T Consensus        96 ~~~~~~~~~~~d~il~V~d~~~~~~~~~~---~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~~-~~~~i~~~~~~~~~~~  171 (260)
T 2xtp_A           96 QRCYLLSAPGPHVLLLVTQLGRYTSQDQQ---AAQRVKEIFGEDAMGHTIVLFTHKEDLNGGS-LMDYMHDSDNKALSKL  171 (260)
T ss_dssp             HHHHHHHTTCCSEEEEEEETTCCCHHHHH---HHHHHHHHHCGGGGGGEEEEEECGGGGTTCC-HHHHHHHCCCHHHHHH
T ss_pred             HHHHHhcCCCCcEEEEEEeCCCCCHHHHH---HHHHHHHHhCchhhccEEEEEEcccccCCcc-HHHHHHhcchHHHHHH
Confidence               22367889999999999863222111   22222221 1122456677776 99996432 221       223345


Q ss_pred             HHHcCCe---E--EEeeccCCCcHHHHHHHHHHHHHhcc
Q 028300          147 AKEHGSL---F--LECSAKTRENVEQCFEQLALKIMEVP  180 (211)
Q Consensus       147 ~~~~~~~---~--~~~Sa~~~~gv~~l~~~i~~~~~~~~  180 (211)
                      ....+..   +  +++||+++.|++++|++|.+.+....
T Consensus       172 ~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~~~  210 (260)
T 2xtp_A          172 VAACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLMEKN  210 (260)
T ss_dssp             HHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHhCCeEEEecCcccccccHHHHHHHHHHHHHHHHhCC
Confidence            5555432   2  78999999999999999999887755

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.88  E-value=3.6e-22  Score=160.35  Aligned_cols=161  Identities=22%  Similarity=0.239  Sum_probs=108.7

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEE--EEEEECCEEEEEEEEeCCChhhhccc-----------
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKI--KLLTVAGKRLKLTIWDTAGQERFRTL-----------   78 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~D~~g~~~~~~~-----------   78 (211)
                      +..++|+++|++|||||||+|+|++.......+.++++...  ..+.+++.  .+.+||++|.......           
T Consensus       178 ~~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~--~~~l~Dt~G~~~~~~~~~~~~e~~~~~  255 (439)
T 1mky_A          178 TDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR--KYVFVDTAGLRRKSRVEPRTVEKYSNY  255 (439)
T ss_dssp             CSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE--EEEESSCSCC-----------CCSCCH
T ss_pred             ccCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCE--EEEEEECCCCccccccchhhHHHHHHH
Confidence            45699999999999999999999988764444444544433  33445554  5789999996432211           


Q ss_pred             -hhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHH-HHH----cCC
Q 028300           79 -TSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIAL-AKE----HGS  152 (211)
Q Consensus        79 -~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~-~~~----~~~  152 (211)
                       ....++.+|++++++|+++..+..+..  +...+.    ..++|+++|+||+|+.+.+....++.... ...    ..+
T Consensus       256 ~~~~~i~~ad~vllv~d~~~~~~~~~~~--i~~~l~----~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  329 (439)
T 1mky_A          256 RVVDSIEKADVVVIVLDATQGITRQDQR--MAGLME----RRGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYS  329 (439)
T ss_dssp             HHHHHHHHCSEEEEEEETTTCCCHHHHH--HHHHHH----HTTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTS
T ss_pred             HHHHHHhhCCEEEEEEeCCCCCCHHHHH--HHHHHH----HcCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCC
Confidence             124567899999999998866554422  333332    34899999999999976554444333222 222    357


Q ss_pred             eEEEeeccCCCcHHHHHHHHHHHHHhcc
Q 028300          153 LFLECSAKTRENVEQCFEQLALKIMEVP  180 (211)
Q Consensus       153 ~~~~~Sa~~~~gv~~l~~~i~~~~~~~~  180 (211)
                      +++++||++|.|++++|+.+.+.+.+..
T Consensus       330 ~~~~~SA~~g~gv~~l~~~i~~~~~~~~  357 (439)
T 1mky_A          330 PLIFTSADKGWNIDRMIDAMNLAYASYT  357 (439)
T ss_dssp             CEEECBTTTTBSHHHHHHHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHHhhc
Confidence            8999999999999999999998776653

>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*

Probab=99.88  E-value=2.8e-22  Score=153.77  Aligned_cols=120  Identities=14%  Similarity=0.167  Sum_probs=95.5

Q ss_pred             EEEEEEEEeCCChhhhccchhhhccCCcEEEEEEECC----------ChhhHHHHHHHHHHHhhhhccCCCccEEEEeec
Q 028300           60 KRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVT----------RRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNK  129 (211)
Q Consensus        60 ~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK  129 (211)
                      ..+.+++||++|++.++..|..++++++++|+|||++          +.+++.+....|...+. .....++|+++++||
T Consensus       165 ~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~-~~~~~~~~iiL~~NK  243 (327)
T 3ohm_A          165 QSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIIT-YPWFQNSSVILFLNK  243 (327)
T ss_dssp             TTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHT-SGGGTTCEEEEEEEC
T ss_pred             eceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhh-hhccCCceEEEEEEC
Confidence            3578999999999999999999999999999999665          66778888774444433 324468999999999


Q ss_pred             CCCCCCc----------------ccCHHHHHHHHH----------HcCCeEEEeeccCCCcHHHHHHHHHHHHHhcc
Q 028300          130 VDRDSER----------------VVSREEGIALAK----------EHGSLFLECSAKTRENVEQCFEQLALKIMEVP  180 (211)
Q Consensus       130 ~Dl~~~~----------------~v~~~~~~~~~~----------~~~~~~~~~Sa~~~~gv~~l~~~i~~~~~~~~  180 (211)
                      +|+..++                .+..+++..+..          ..++.+++|||+++.+|+.+|..+.+.+....
T Consensus       244 ~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~~Il~~~  320 (327)
T 3ohm_A          244 KDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLN  320 (327)
T ss_dssp             HHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             chhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHHHHHHHh
Confidence            9985433                356677776643          34567899999999999999999999887653

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.87  E-value=4.9e-21  Score=152.40  Aligned_cols=159  Identities=19%  Similarity=0.179  Sum_probs=104.9

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhhCCCC----CCCC--ccceeeEEEEEEE-------------C--C----EEEEEEE
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFISSSVD----DLSP--TIGVDFKIKLLTV-------------A--G----KRLKLTI   66 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~~~~~~----~~~~--~~~~~~~~~~~~~-------------~--~----~~~~~~l   66 (211)
                      ...++|+++|++++|||||+++|.+....    +..+  |....+....+..             .  +    ....+.|
T Consensus         6 ~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i   85 (408)
T 1s0u_A            6 QAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSF   85 (408)
T ss_dssp             CCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEE
T ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEE
Confidence            45799999999999999999999854321    1112  3333333222211             1  1    2378999


Q ss_pred             EeCCChhhhccchhhhccCCcEEEEEEECCC----hhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCccc--CH
Q 028300           67 WDTAGQERFRTLTSSYYRGAQGIILVYDVTR----RETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVV--SR  140 (211)
Q Consensus        67 ~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v--~~  140 (211)
                      ||+||+++|.......+..+|++|+|+|+++    +++.+.+.. |    ..   ....|+++++||+|+.+....  ..
T Consensus        86 iDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~-~----~~---l~~~~iivv~NK~Dl~~~~~~~~~~  157 (408)
T 1s0u_A           86 VDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMA-L----EI---LGIDKIIIVQNKIDLVDEKQAEENY  157 (408)
T ss_dssp             EECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHH-H----HH---TTCCCEEEEEECTTSSCTTTTTTHH
T ss_pred             EECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHH-H----HH---cCCCeEEEEEEccCCCCHHHHHHHH
Confidence            9999999998777778889999999999995    444444432 2    11   123589999999999765432  23


Q ss_pred             HHHHHHHHH---cCCeEEEeeccCCCcHHHHHHHHHHHHHh
Q 028300          141 EEGIALAKE---HGSLFLECSAKTRENVEQCFEQLALKIME  178 (211)
Q Consensus       141 ~~~~~~~~~---~~~~~~~~Sa~~~~gv~~l~~~i~~~~~~  178 (211)
                      +++..++..   .+++++++||+++.|+++++++|.+.+..
T Consensus       158 ~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~~  198 (408)
T 1s0u_A          158 EQIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIPT  198 (408)
T ss_dssp             HHHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHSCC
T ss_pred             HHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCCC
Confidence            445555543   35789999999999999999999886654

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=99.87  E-value=1e-21  Score=161.78  Aligned_cols=159  Identities=23%  Similarity=0.270  Sum_probs=108.9

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhhCC--CC------C------CCCccceeeEEEEEEE-----CCEEEEEEEEeCCChh
Q 028300           13 LSFKILLIGDSGVGKSSLLVSFISSS--VD------D------LSPTIGVDFKIKLLTV-----AGKRLKLTIWDTAGQE   73 (211)
Q Consensus        13 ~~~~I~v~G~~~~GKssli~~l~~~~--~~------~------~~~~~~~~~~~~~~~~-----~~~~~~~~l~D~~g~~   73 (211)
                      +-.+|+++|+.++|||||+++|+...  ..      .      ...+.|.+.......+     ++..+.+.||||||+.
T Consensus         3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~   82 (599)
T 3cb4_D            3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV   82 (599)
T ss_dssp             TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence            45799999999999999999998632  11      0      0112333333222222     4557899999999999


Q ss_pred             hhccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCC-
Q 028300           74 RFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGS-  152 (211)
Q Consensus        74 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~-  152 (211)
                      +|...+...++.+|++|+|+|+++..+...... |.....     .++|+++|+||+|+...+  ......++...++. 
T Consensus        83 dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~-~~~~~~-----~~ipiIvViNKiDl~~a~--~~~v~~ei~~~lg~~  154 (599)
T 3cb4_D           83 DFSYEVSRSLAACEGALLVVDAGQGVEAQTLAN-CYTAME-----MDLEVVPVLNKIDLPAAD--PERVAEEIEDIVGID  154 (599)
T ss_dssp             GGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHH-HHHHHH-----TTCEEEEEEECTTSTTCC--HHHHHHHHHHHTCCC
T ss_pred             HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHH-HHHHHH-----CCCCEEEeeeccCccccc--HHHHHHHHHHHhCCC
Confidence            999888899999999999999998766555554 544332     478999999999996543  22223444555565 


Q ss_pred             --eEEEeeccCCCcHHHHHHHHHHHHHhc
Q 028300          153 --LFLECSAKTRENVEQCFEQLALKIMEV  179 (211)
Q Consensus       153 --~~~~~Sa~~~~gv~~l~~~i~~~~~~~  179 (211)
                        +++++||++|.|+++++++|.+.+...
T Consensus       155 ~~~vi~vSAktg~GI~~Ll~~I~~~lp~p  183 (599)
T 3cb4_D          155 ATDAVRCSAKTGVGVQDVLERLVRDIPPP  183 (599)
T ss_dssp             CTTCEEECTTTCTTHHHHHHHHHHHSCCC
T ss_pred             cceEEEeecccCCCchhHHHHHhhcCCCc
Confidence              499999999999999999999877653

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=99.87  E-value=1.3e-22  Score=164.71  Aligned_cols=153  Identities=17%  Similarity=0.103  Sum_probs=101.3

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhhCCC--C----------------------------CCCCccceeeEEEEEEECCEE
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFISSSV--D----------------------------DLSPTIGVDFKIKLLTVAGKR   61 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~~~~~--~----------------------------~~~~~~~~~~~~~~~~~~~~~   61 (211)
                      ...+||+++|.+++|||||+++|++...  .                            ......|.+.......+....
T Consensus        31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~  110 (483)
T 3p26_A           31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR  110 (483)
T ss_dssp             CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCC
Confidence            3569999999999999999999975511  0                            011123444444444455566


Q ss_pred             EEEEEEeCCChhhhccchhhhccCCcEEEEEEECCChhhHHH------HHHHHHHHhhhhccCCCccEEEEeecCCCCCC
Q 028300           62 LKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTN------LSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSE  135 (211)
Q Consensus        62 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~------~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~  135 (211)
                      ..+.||||||+.+|.......++.+|++|+|+|+++..+...      ... ....+.   .....|+++|+||+|+.+.
T Consensus       111 ~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e-~~~~~~---~~~~~~iIvviNK~Dl~~~  186 (483)
T 3p26_A          111 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKE-HMLLAS---SLGIHNLIIAMNKMDNVDW  186 (483)
T ss_dssp             CEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHH-HHHHHH---HTTCCCEEEEEECGGGGTT
T ss_pred             ceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHH-HHHHHH---HcCCCcEEEEEECcCcccc
Confidence            789999999999999888999999999999999998644322      111 111222   1223579999999999764


Q ss_pred             cccCHHHHH----HHHHHc-----CCeEEEeeccCCCcHHHH
Q 028300          136 RVVSREEGI----ALAKEH-----GSLFLECSAKTRENVEQC  168 (211)
Q Consensus       136 ~~v~~~~~~----~~~~~~-----~~~~~~~Sa~~~~gv~~l  168 (211)
                      +....++..    .+....     +++++++||++|.|++++
T Consensus       187 ~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~el  228 (483)
T 3p26_A          187 SQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI  228 (483)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSSS
T ss_pred             hHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCcccc
Confidence            433333333    223322     457999999999999753

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.87  E-value=9.5e-23  Score=164.44  Aligned_cols=158  Identities=17%  Similarity=0.121  Sum_probs=105.6

Q ss_pred             CCceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCC--------hhhhccchhh
Q 028300           10 SYDLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAG--------QERFRTLTSS   81 (211)
Q Consensus        10 ~~~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g--------~~~~~~~~~~   81 (211)
                      ......+|+++|.+|||||||+|+|.+..+.....++|++...........+..+.+|||||        +..+...+..
T Consensus        19 ~~m~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~   98 (456)
T 4dcu_A           19 SHMGKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEI   98 (456)
T ss_dssp             ----CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHH
T ss_pred             hhcCCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHh
Confidence            33456799999999999999999999988776777888888777777777777899999999        6667777888


Q ss_pred             hccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCC-eEEEeecc
Q 028300           82 YYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGS-LFLECSAK  160 (211)
Q Consensus        82 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~  160 (211)
                      +++.+|++|+|+|..+.....+  ..+...+.    ..++|+++|+||+|+.+...    ...++. ..+. .++++||.
T Consensus        99 ~~~~ad~il~VvD~~~~~~~~d--~~l~~~l~----~~~~pvilV~NK~D~~~~~~----~~~e~~-~lg~~~~~~iSA~  167 (456)
T 4dcu_A           99 AMDEADVIIFMVNGREGVTAAD--EEVAKILY----RTKKPVVLAVNKLDNTEMRA----NIYDFY-SLGFGEPYPISGT  167 (456)
T ss_dssp             HHHHCSEEEEEEESSSCSCHHH--HHHHHHHT----TCCSCEEEEEECC-------------CCSG-GGSSSSEEECCTT
T ss_pred             hHhhCCEEEEEEeCCCCCChHH--HHHHHHHH----HcCCCEEEEEECccchhhhh----hHHHHH-HcCCCceEEeecc
Confidence            8999999999999887433222  22334443    35899999999999853321    111111 2233 46799999


Q ss_pred             CCCcHHHHHHHHHHHHHh
Q 028300          161 TRENVEQCFEQLALKIME  178 (211)
Q Consensus       161 ~~~gv~~l~~~i~~~~~~  178 (211)
                      +|.|+.++++++.+.+..
T Consensus       168 ~g~gv~~L~~~i~~~l~~  185 (456)
T 4dcu_A          168 HGLGLGDLLDAVAEHFKN  185 (456)
T ss_dssp             TCTTHHHHHHHHHTTGGG
T ss_pred             cccchHHHHHHHHhhccc
Confidence            999999999999887654

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}

Probab=99.87  E-value=1.5e-21  Score=151.76  Aligned_cols=119  Identities=16%  Similarity=0.163  Sum_probs=90.6

Q ss_pred             EEEEEEEEeCCChhhhccchhhhccCCcEEEEEEECC----------ChhhHHHHHHHHHHHhhhhccCCCccEEEEeec
Q 028300           60 KRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVT----------RRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNK  129 (211)
Q Consensus        60 ~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK  129 (211)
                      ..+.+.+||++|++.++..|..++++++++|+|||++          +.+++++... |...+.......++|+++|+||
T Consensus       181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~-~~~~i~~~~~~~~~piiLvgNK  259 (354)
T 2xtz_A          181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKE-LFDWVLKQPCFEKTSFMLFLNK  259 (354)
T ss_dssp             ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHH-HHHHHHTCGGGSSCEEEEEEEC
T ss_pred             cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHH-HHHHHHhccccCCCeEEEEEEC
Confidence            5789999999999999999999999999999999998          7888999988 5444433323468999999999


Q ss_pred             CCCCCCcc--c-------------------CHHHHHHHHHH----------------cCCeEEEeeccCCCcHHHHHHHH
Q 028300          130 VDRDSERV--V-------------------SREEGIALAKE----------------HGSLFLECSAKTRENVEQCFEQL  172 (211)
Q Consensus       130 ~Dl~~~~~--v-------------------~~~~~~~~~~~----------------~~~~~~~~Sa~~~~gv~~l~~~i  172 (211)
                      +|+..++.  +                   ..+++..++..                ..+.+++|||+++.||+++|+++
T Consensus       260 ~DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v  339 (354)
T 2xtz_A          260 FDIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLV  339 (354)
T ss_dssp             HHHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHH
T ss_pred             cchhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHH
Confidence            99843221  1                   13455555332                12346999999999999999999


Q ss_pred             HHHHHhc
Q 028300          173 ALKIMEV  179 (211)
Q Consensus       173 ~~~~~~~  179 (211)
                      .+.+...
T Consensus       340 ~~~I~~~  346 (354)
T 2xtz_A          340 DETLRRR  346 (354)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9887653

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=99.87  E-value=4e-21  Score=153.03  Aligned_cols=161  Identities=17%  Similarity=0.178  Sum_probs=111.0

Q ss_pred             CCceeeEEEEEcCCCCcHHHHHHHHhhCCCC----CCCC--ccceeeEEEEEEE-------------C--C----EEEEE
Q 028300           10 SYDLSFKILLIGDSGVGKSSLLVSFISSSVD----DLSP--TIGVDFKIKLLTV-------------A--G----KRLKL   64 (211)
Q Consensus        10 ~~~~~~~I~v~G~~~~GKssli~~l~~~~~~----~~~~--~~~~~~~~~~~~~-------------~--~----~~~~~   64 (211)
                      .....++|+++|++++|||||+++|.+....    +..+  |....+....+..             .  +    ....+
T Consensus         6 ~~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i   85 (410)
T 1kk1_A            6 SRQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRV   85 (410)
T ss_dssp             CCSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEE
T ss_pred             cCCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEE
Confidence            3467799999999999999999999854321    1112  3322333222211             0  1    13789


Q ss_pred             EEEeCCChhhhccchhhhccCCcEEEEEEECCC----hhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCccc--
Q 028300           65 TIWDTAGQERFRTLTSSYYRGAQGIILVYDVTR----RETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVV--  138 (211)
Q Consensus        65 ~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v--  138 (211)
                      .|||+||+.+|.......+..+|++|+|+|+++    +++.+.+.. +    ...   ...|+++|+||+|+.+....  
T Consensus        86 ~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~-~----~~~---~~~~iivviNK~Dl~~~~~~~~  157 (410)
T 1kk1_A           86 SFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMA-L----QII---GQKNIIIAQNKIELVDKEKALE  157 (410)
T ss_dssp             EEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHH-H----HHH---TCCCEEEEEECGGGSCHHHHHH
T ss_pred             EEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHH-H----HHc---CCCcEEEEEECccCCCHHHHHH
Confidence            999999999988777778889999999999995    344444332 2    211   23589999999998654321  


Q ss_pred             CHHHHHHHHHH---cCCeEEEeeccCCCcHHHHHHHHHHHHHh
Q 028300          139 SREEGIALAKE---HGSLFLECSAKTRENVEQCFEQLALKIME  178 (211)
Q Consensus       139 ~~~~~~~~~~~---~~~~~~~~Sa~~~~gv~~l~~~i~~~~~~  178 (211)
                      ..+++..++..   .+++++++||+++.|+++++++|.+.+..
T Consensus       158 ~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~  200 (410)
T 1kk1_A          158 NYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIPT  200 (410)
T ss_dssp             HHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCCC
Confidence            22334444433   35789999999999999999999886654

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=99.86  E-value=2.8e-21  Score=159.05  Aligned_cols=160  Identities=23%  Similarity=0.264  Sum_probs=112.0

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhhCC--CCC------CC------CccceeeE----EEEEEE-CCEEEEEEEEeCCCh
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFISSS--VDD------LS------PTIGVDFK----IKLLTV-AGKRLKLTIWDTAGQ   72 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~~~~--~~~------~~------~~~~~~~~----~~~~~~-~~~~~~~~l~D~~g~   72 (211)
                      ++..+|+++|+.++|||||+++|+...  ...      ..      ...|.+..    ...+.. ++..+.+.||||||+
T Consensus         4 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh   83 (600)
T 2ywe_A            4 KNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGH   83 (600)
T ss_dssp             GGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCS
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCc
Confidence            456799999999999999999998631  110      00      11222221    111221 455689999999999


Q ss_pred             hhhccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCC
Q 028300           73 ERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGS  152 (211)
Q Consensus        73 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~  152 (211)
                      .+|...+...++.+|++|+|+|+++..+...... |....     ..++|+++|+||+|+...+  ......++...++.
T Consensus        84 ~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~-~~~a~-----~~~ipiIvviNKiDl~~a~--~~~v~~el~~~lg~  155 (600)
T 2ywe_A           84 VDFSYEVSRALAACEGALLLIDASQGIEAQTVAN-FWKAV-----EQDLVIIPVINKIDLPSAD--VDRVKKQIEEVLGL  155 (600)
T ss_dssp             GGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHH-HHHHH-----HTTCEEEEEEECTTSTTCC--HHHHHHHHHHTSCC
T ss_pred             HhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHH-HHHHH-----HCCCCEEEEEeccCccccC--HHHHHHHHHHhhCC
Confidence            9998888888999999999999999766666554 54433     2478999999999996543  12223444455565


Q ss_pred             ---eEEEeeccCCCcHHHHHHHHHHHHHhc
Q 028300          153 ---LFLECSAKTRENVEQCFEQLALKIMEV  179 (211)
Q Consensus       153 ---~~~~~Sa~~~~gv~~l~~~i~~~~~~~  179 (211)
                         +++++||++|.|++++|++|.+.+...
T Consensus       156 ~~~~vi~vSAktg~GI~~Lle~I~~~lp~p  185 (600)
T 2ywe_A          156 DPEEAILASAKEGIGIEEILEAIVNRIPPP  185 (600)
T ss_dssp             CGGGCEECBTTTTBSHHHHHHHHHHHSCCC
T ss_pred             CcccEEEEEeecCCCchHHHHHHHHhcccc
Confidence               499999999999999999999877653

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=99.86  E-value=1.1e-20  Score=147.65  Aligned_cols=163  Identities=20%  Similarity=0.135  Sum_probs=106.6

Q ss_pred             eeE-EEEEcCCCCcHHHHHHHHhhCCCC-CCCCccceeeEEEEEEECCEEEEEEEEeCCChh---------hhccchhhh
Q 028300           14 SFK-ILLIGDSGVGKSSLLVSFISSSVD-DLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQE---------RFRTLTSSY   82 (211)
Q Consensus        14 ~~~-I~v~G~~~~GKssli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~---------~~~~~~~~~   82 (211)
                      .++ |+++|++|+|||||+|+|.+..+. ...+....+.....+.+.+  ..+.+|||+|.-         .+...+ ..
T Consensus       178 ~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g--~~v~l~DT~G~i~~lp~~lve~f~~tl-~~  254 (364)
T 2qtf_A          178 NIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINN--RKIMLVDTVGFIRGIPPQIVDAFFVTL-SE  254 (364)
T ss_dssp             -CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETT--EEEEEEECCCBCSSCCGGGHHHHHHHH-HG
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECC--EEEEEEeCCCchhcCCHHHHHHHHHHH-HH
Confidence            455 999999999999999999987751 1112222223344556665  467899999962         233322 35


Q ss_pred             ccCCcEEEEEEECCChh--hHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccC-HHHHHHHHHHc---CCeEEE
Q 028300           83 YRGAQGIILVYDVTRRE--TFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVS-REEGIALAKEH---GSLFLE  156 (211)
Q Consensus        83 ~~~~d~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~-~~~~~~~~~~~---~~~~~~  156 (211)
                      +..+|++++|+|++++.  ..+.... |...+... ...+.|+++|+||+|+....... ......+...+   +.++++
T Consensus       255 ~~~aD~il~VvD~s~~~~~~~~~~~~-~~~~L~~l-~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~~  332 (364)
T 2qtf_A          255 AKYSDALILVIDSTFSENLLIETLQS-SFEILREI-GVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIP  332 (364)
T ss_dssp             GGGSSEEEEEEETTSCHHHHHHHHHH-HHHHHHHH-TCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEEE
T ss_pred             HHhCCEEEEEEECCCCcchHHHHHHH-HHHHHHHh-CcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcEEE
Confidence            78899999999999876  4444433 55555543 34578999999999986543111 11222233444   236899


Q ss_pred             eeccCCCcHHHHHHHHHHHHHhccc
Q 028300          157 CSAKTRENVEQCFEQLALKIMEVPS  181 (211)
Q Consensus       157 ~Sa~~~~gv~~l~~~i~~~~~~~~~  181 (211)
                      +||+++.|+++++++|.+.+.....
T Consensus       333 ~SA~~g~gi~~L~~~I~~~l~~~~~  357 (364)
T 2qtf_A          333 ISALKRTNLELLRDKIYQLATQLSL  357 (364)
T ss_dssp             CBTTTTBSHHHHHHHHHHHHHHHC-
T ss_pred             EECCCCcCHHHHHHHHHHHhcccCC
Confidence            9999999999999999987766543

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=99.86  E-value=6.9e-22  Score=154.92  Aligned_cols=147  Identities=9%  Similarity=0.072  Sum_probs=105.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEEEEEC
Q 028300           16 KILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDV   95 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~   95 (211)
                      +|+++|++++|||||+++|+         ..+.+.......+......+.||||||+.+|.......++.+|++|+|+| 
T Consensus        23 ~i~iiG~~d~GKSTL~~~L~---------~~giTi~~~~~~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd-   92 (370)
T 2elf_A           23 NVAIIGTEKSGRTSLAANLG---------KKGTSSDITMYNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP-   92 (370)
T ss_dssp             EEEEEESTTSSHHHHHHTTS---------EEEEESSSEEEEECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-
T ss_pred             EEEEECCCCCCHHHHHHHHH---------hCCEEEEeeEEEEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-
Confidence            99999999999999999998         22222222223445455679999999999987777778899999999999 


Q ss_pred             CChhhHHHHHHHHHHHhhhhccCCCccE-EEEee-cCCCCCCcccCH--HHHHHHHHHc---CCeEEE--eeccC---CC
Q 028300           96 TRRETFTNLSDVWAKEVDLYSTNQDCVK-MLVGN-KVDRDSERVVSR--EEGIALAKEH---GSLFLE--CSAKT---RE  163 (211)
Q Consensus        96 ~~~~s~~~~~~~~~~~~~~~~~~~~~p~-viv~n-K~Dl~~~~~v~~--~~~~~~~~~~---~~~~~~--~Sa~~---~~  163 (211)
                      ++ ........ +...+..    .++|. ++++| |+|+ +.+.+..  ++...++...   .+++++  +||++   +.
T Consensus        93 ~~-g~~~qt~e-~~~~~~~----~~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~  165 (370)
T 2elf_A           93 PQ-GLDAHTGE-CIIALDL----LGFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFE  165 (370)
T ss_dssp             TT-CCCHHHHH-HHHHHHH----TTCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTT
T ss_pred             CC-CCcHHHHH-HHHHHHH----cCCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEecccccccCcCCC
Confidence            53 23334444 4444432    36777 89999 9998 4332221  3344444333   368999  99999   99


Q ss_pred             cHHHHHHHHHHHHHhc
Q 028300          164 NVEQCFEQLALKIMEV  179 (211)
Q Consensus       164 gv~~l~~~i~~~~~~~  179 (211)
                      |++++++.|.+.+...
T Consensus       166 gi~~L~~~l~~~~~~~  181 (370)
T 2elf_A          166 GVDELKARINEVAEKI  181 (370)
T ss_dssp             THHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhhcccc
Confidence            9999999999877654

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=99.86  E-value=6.1e-22  Score=149.78  Aligned_cols=159  Identities=19%  Similarity=0.295  Sum_probs=90.9

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhhCCC-C-CC-------CCccceeeEEEEEEECCEEEEEEEEeCCChhh-------h
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFISSSV-D-DL-------SPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER-------F   75 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~~~~~-~-~~-------~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-------~   75 (211)
                      ...++|+++|.+|+|||||+|+|++... . .+       .++.+.+.....+...+..+.+.+|||||...       +
T Consensus         6 g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~   85 (274)
T 3t5d_A            6 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW   85 (274)
T ss_dssp             -CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTT
T ss_pred             ccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhH
Confidence            4579999999999999999999887664 2 22       33444444433333344446899999999622       2


Q ss_pred             ccch-------hhhc-------------cCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCC
Q 028300           76 RTLT-------SSYY-------------RGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSE  135 (211)
Q Consensus        76 ~~~~-------~~~~-------------~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~  135 (211)
                      ..+.       ..++             ..+|+++++++.+... +......+...+..     ++|+++|+||+|+...
T Consensus        86 ~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~-~~~~d~~~l~~l~~-----~~pvi~V~nK~D~~~~  159 (274)
T 3t5d_A           86 QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHG-LKPLDIEFMKRLHE-----KVNIIPLIAKADTLTP  159 (274)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSS-CCHHHHHHHHHHTT-----TSCEEEEESSGGGSCH
T ss_pred             HHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCC-CCHHHHHHHHHHhc-----cCCEEEEEeccCCCCH
Confidence            2211       1222             2378999999876522 11222214444332     7999999999998654


Q ss_pred             cccCH--HHHHHHHHHcCCeEEEeeccCCCcHHHHHHHHHHHH
Q 028300          136 RVVSR--EEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKI  176 (211)
Q Consensus       136 ~~v~~--~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~~  176 (211)
                      .+...  ..+.......+++++.+|+.++.|+++++++|.+.+
T Consensus       160 ~e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~  202 (274)
T 3t5d_A          160 EECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRL  202 (274)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCCCCC-----------CHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcCC
Confidence            33322  234445556789999999999999999999987754

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=99.86  E-value=7.3e-22  Score=153.98  Aligned_cols=118  Identities=14%  Similarity=0.145  Sum_probs=87.9

Q ss_pred             EEEEEEEeCCChhhhccchhhhccCCcEEEEEEECCC----------hhhHHHHHHHHHHHhhhhccCCCccEEEEeecC
Q 028300           61 RLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTR----------RETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKV  130 (211)
Q Consensus        61 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~  130 (211)
                      .+.+.+||++|+..++..|..++++++++|+|||+++          .+++.+....|...+... ...++|+++++||+
T Consensus       200 ~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~-~~~~~piILv~NK~  278 (362)
T 1zcb_A          200 NVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNR-VFSNVSIILFLNKT  278 (362)
T ss_dssp             TEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCG-GGTTSEEEEEEECH
T ss_pred             CeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcch-hhCCCCEEEEEECh
Confidence            4789999999999999999999999999999999999          778999888454444432 34679999999999


Q ss_pred             CCCCCc----------------ccCHHHHHHHHH-----------HcCCeEEEeeccCCCcHHHHHHHHHHHHHhc
Q 028300          131 DRDSER----------------VVSREEGIALAK-----------EHGSLFLECSAKTRENVEQCFEQLALKIMEV  179 (211)
Q Consensus       131 Dl~~~~----------------~v~~~~~~~~~~-----------~~~~~~~~~Sa~~~~gv~~l~~~i~~~~~~~  179 (211)
                      |+..++                .+..+++..++.           ..++.+++|||+++.||+++|+++.+.+...
T Consensus       279 DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~i~~~  354 (362)
T 1zcb_A          279 DLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILHD  354 (362)
T ss_dssp             HHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHHHHHHH
Confidence            985322                255666666551           3457799999999999999999999988654

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.85  E-value=3e-21  Score=154.78  Aligned_cols=155  Identities=19%  Similarity=0.170  Sum_probs=103.4

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHhhCCC---CCC----------CCc-------------------cceeeEEEEEEEC
Q 028300           11 YDLSFKILLIGDSGVGKSSLLVSFISSSV---DDL----------SPT-------------------IGVDFKIKLLTVA   58 (211)
Q Consensus        11 ~~~~~~I~v~G~~~~GKssli~~l~~~~~---~~~----------~~~-------------------~~~~~~~~~~~~~   58 (211)
                      ....++|+++|++++|||||+++|++...   ...          ..+                   .|.+.......+.
T Consensus        21 ~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~  100 (434)
T 1zun_B           21 RKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFS  100 (434)
T ss_dssp             SCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEE
T ss_pred             cCCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEee
Confidence            35679999999999999999999986541   110          011                   1222222222333


Q ss_pred             CEEEEEEEEeCCChhhhccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCccc
Q 028300           59 GKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVV  138 (211)
Q Consensus        59 ~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v  138 (211)
                      .....+.||||||+.+|.......+..+|++|+|+|+++..... ... +...+...   ...|+++|+||+|+.+....
T Consensus       101 ~~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~q-t~~-~l~~~~~~---~~~~iIvviNK~Dl~~~~~~  175 (434)
T 1zun_B          101 TAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQ-TRR-HSYIASLL---GIKHIVVAINKMDLNGFDER  175 (434)
T ss_dssp             CSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHH-HHH-HHHHHHHT---TCCEEEEEEECTTTTTSCHH
T ss_pred             cCCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHH-HHH-HHHHHHHc---CCCeEEEEEEcCcCCcccHH
Confidence            34567999999999999887888899999999999999854222 222 33333222   22369999999999653211


Q ss_pred             ----CHHHHHHHHHHcC-----CeEEEeeccCCCcHHHHHH
Q 028300          139 ----SREEGIALAKEHG-----SLFLECSAKTRENVEQCFE  170 (211)
Q Consensus       139 ----~~~~~~~~~~~~~-----~~~~~~Sa~~~~gv~~l~~  170 (211)
                          ...+...++..++     ++++++||++|.|++++++
T Consensus       176 ~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~~  216 (434)
T 1zun_B          176 VFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKSE  216 (434)
T ss_dssp             HHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCCT
T ss_pred             HHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccccc
Confidence                1234455566666     6799999999999987543

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.85  E-value=3.1e-22  Score=156.63  Aligned_cols=163  Identities=18%  Similarity=0.294  Sum_probs=90.9

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhhCCC-C-CCC--------CccceeeEEEEEEECCEEEEEEEEeCCCh-------hh
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFISSSV-D-DLS--------PTIGVDFKIKLLTVAGKRLKLTIWDTAGQ-------ER   74 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~~~~~-~-~~~--------~~~~~~~~~~~~~~~~~~~~~~l~D~~g~-------~~   74 (211)
                      ...++|+|+|++|+|||||+++|++... . .+.        ++.+.......+...+....+.+||+||+       +.
T Consensus        35 ~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~  114 (361)
T 2qag_A           35 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC  114 (361)
T ss_dssp             CCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-------------
T ss_pred             CCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHH
Confidence            4578999999999999999999876543 2 111        23233332223333455678999999998       55


Q ss_pred             hccchh-------hhccCC-------------cEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCC
Q 028300           75 FRTLTS-------SYYRGA-------------QGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDS  134 (211)
Q Consensus        75 ~~~~~~-------~~~~~~-------------d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~  134 (211)
                      +..++.       .+++.+             |+++|+++.+ ..++..+...|...+     ..++|+++|+||+|+..
T Consensus       115 ~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~-~~~l~~~d~~~~~~l-----~~~~piIlV~NK~Dl~~  188 (361)
T 2qag_A          115 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPF-GHGLKPLDVAFMKAI-----HNKVNIVPVIAKADTLT  188 (361)
T ss_dssp             -CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSS-SSSCCHHHHHHHHHT-----CS-SCEEEEEECCSSSC
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecC-CCCcchhHHHHHHHh-----ccCCCEEEEEECCCCCC
Confidence            555554       444333             3455555432 334555543355443     25789999999999976


Q ss_pred             CcccCH--HHHHHHHHHcCCeEEEeeccCCCcHHHHHHHHHHHHHhccc
Q 028300          135 ERVVSR--EEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIMEVPS  181 (211)
Q Consensus       135 ~~~v~~--~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~~~~~~~  181 (211)
                      .+++..  .++..++..++++++++||+++.+ ++.|.++.+.+.+..+
T Consensus       189 ~~ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~~~ip  236 (361)
T 2qag_A          189 LKERERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLLKASIP  236 (361)
T ss_dssp             HHHHHHHHHHHHHHTTCC-CCSCCCC----------CHHHHHHHHHTCS
T ss_pred             HHHHHHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHHHhcCC
Confidence            655443  455566666789999999999999 8889998888876543

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=99.85  E-value=2.5e-23  Score=169.08  Aligned_cols=160  Identities=19%  Similarity=0.148  Sum_probs=109.5

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEE
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGII   90 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (211)
                      +++++|+++|++++|||||+++|.+..+ ....+....+.....+... ....+.||||||+..|..++...+..+|++|
T Consensus         2 ~r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~-~g~~i~~iDTPGhe~f~~~~~~~~~~aD~vI   80 (537)
T 3izy_P            2 PRSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLP-SGEKITFLDTPGHAAFSAMRARGTQVTDIVI   80 (537)
T ss_dssp             CCCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSS-CSSCCBCEECSSSCCTTTSBBSSSBSBSSCE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeC-CCCEEEEEECCChHHHHHHHHHHHccCCEEE
Confidence            4678999999999999999999997765 2222222222211111111 2346899999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCH-HHHHHH---HHHc--CCeEEEeeccCCCc
Q 028300           91 LVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSR-EEGIAL---AKEH--GSLFLECSAKTREN  164 (211)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~-~~~~~~---~~~~--~~~~~~~Sa~~~~g  164 (211)
                      +|+|+++......... | ..+    ...++|+++++||+|+.+...... .+...+   ...+  .++++++||++|.|
T Consensus        81 LVVDa~dg~~~qt~e~-l-~~~----~~~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~G  154 (537)
T 3izy_P           81 LVVAADDGVMKQTVES-I-QHA----KDAHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGEN  154 (537)
T ss_dssp             EECBSSSCCCHHHHHH-H-HHH----HTTTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCS
T ss_pred             EEEECCCCccHHHHHH-H-HHH----HHcCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCCC
Confidence            9999998544433322 2 222    235789999999999864322111 111111   1111  24799999999999


Q ss_pred             HHHHHHHHHHHHHh
Q 028300          165 VEQCFEQLALKIME  178 (211)
Q Consensus       165 v~~l~~~i~~~~~~  178 (211)
                      ++++|++|...+..
T Consensus       155 I~eLle~I~~l~~~  168 (537)
T 3izy_P          155 MMALAEATIALAEM  168 (537)
T ss_dssp             SHHHHHHHHHHHTT
T ss_pred             chhHHHHHHHhhhc
Confidence            99999999887653

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=99.85  E-value=2.9e-21  Score=153.21  Aligned_cols=159  Identities=14%  Similarity=0.086  Sum_probs=110.1

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhhCC-------CCCC--------CCccceeeEEEEEEECCEEEEEEEEeCCChhhhcc
Q 028300           13 LSFKILLIGDSGVGKSSLLVSFISSS-------VDDL--------SPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRT   77 (211)
Q Consensus        13 ~~~~I~v~G~~~~GKssli~~l~~~~-------~~~~--------~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~   77 (211)
                      ..++|+++|++++|||||+++|.+..       +..+        ....+.+.......+......+.|||+||+.+|..
T Consensus         2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~   81 (397)
T 1d2e_A            2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK   81 (397)
T ss_dssp             CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred             CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHH
Confidence            46899999999999999999998641       1100        01234444433444444557889999999999987


Q ss_pred             chhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCcc-EEEEeecCCCCCCccc---CHHHHHHHHHHcC--
Q 028300           78 LTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCV-KMLVGNKVDRDSERVV---SREEGIALAKEHG--  151 (211)
Q Consensus        78 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p-~viv~nK~Dl~~~~~v---~~~~~~~~~~~~~--  151 (211)
                      .....+..+|++|+|+|+++......... | ..+..    .++| +++++||+|+......   ...+...++..++  
T Consensus        82 ~~~~~~~~aD~~ilVvda~~g~~~qt~e~-l-~~~~~----~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~  155 (397)
T 1d2e_A           82 NMITGTAPLDGCILVVAANDGPMPQTREH-L-LLARQ----IGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYK  155 (397)
T ss_dssp             HHHHTSSCCSEEEEEEETTTCSCHHHHHH-H-HHHHH----TTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSC
T ss_pred             HHHhhHhhCCEEEEEEECCCCCCHHHHHH-H-HHHHH----cCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCC
Confidence            78888999999999999998533222221 2 22222    3778 6899999998642211   1234555666655  


Q ss_pred             ---CeEEEeeccCCC---------c-HHHHHHHHHHHHH
Q 028300          152 ---SLFLECSAKTRE---------N-VEQCFEQLALKIM  177 (211)
Q Consensus       152 ---~~~~~~Sa~~~~---------g-v~~l~~~i~~~~~  177 (211)
                         ++++++||+++.         | +.++++.|.+.+.
T Consensus       156 ~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p  194 (397)
T 1d2e_A          156 GEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIP  194 (397)
T ss_dssp             TTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSC
T ss_pred             cccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCC
Confidence               589999999965         3 8888888877654

>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}

Probab=99.85  E-value=3.6e-21  Score=148.08  Aligned_cols=119  Identities=18%  Similarity=0.180  Sum_probs=93.6

Q ss_pred             CEEEEEEEEeCCChhhhccchhhhccCCcEEEEEEECC----------ChhhHHHHHHHHHHHhhhhccCCCccEEEEee
Q 028300           59 GKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVT----------RRETFTNLSDVWAKEVDLYSTNQDCVKMLVGN  128 (211)
Q Consensus        59 ~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~n  128 (211)
                      ...+.+++||++|++.++..|..++++++++|+|||++          +.+++.+....|...+... ...++|+++++|
T Consensus       158 ~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~-~~~~~piiLv~N  236 (340)
T 4fid_A          158 VKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNE-FLKGAVKLIFLN  236 (340)
T ss_dssp             SSSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCG-GGTTSEEEEEEE
T ss_pred             eeeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhh-ccCCCeEEEEEE
Confidence            34578999999999999999999999999999999998          6788998888454444432 446899999999


Q ss_pred             cCCCCCCc---------------ccCHHHHHHHHHH-c--------------------------CCeEEEeeccCCCcHH
Q 028300          129 KVDRDSER---------------VVSREEGIALAKE-H--------------------------GSLFLECSAKTRENVE  166 (211)
Q Consensus       129 K~Dl~~~~---------------~v~~~~~~~~~~~-~--------------------------~~~~~~~Sa~~~~gv~  166 (211)
                      |+|+..++               ....+++..++.. +                          .+.+++|||++..+|+
T Consensus       237 K~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv~  316 (340)
T 4fid_A          237 KMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNIK  316 (340)
T ss_dssp             CHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHHHH
T ss_pred             CchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHHHH
Confidence            99984321               1234454443322 2                          3668999999999999


Q ss_pred             HHHHHHHHHHHh
Q 028300          167 QCFEQLALKIME  178 (211)
Q Consensus       167 ~l~~~i~~~~~~  178 (211)
                      .+|+.+.+.++.
T Consensus       317 ~vF~~v~~~Il~  328 (340)
T 4fid_A          317 RVFMLAVDVIMK  328 (340)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999999887

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=99.85  E-value=1.6e-21  Score=155.19  Aligned_cols=161  Identities=14%  Similarity=0.088  Sum_probs=111.1

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHhhC--------CCCCC--------CCccceeeEEEEEEECCEEEEEEEEeCCChhh
Q 028300           11 YDLSFKILLIGDSGVGKSSLLVSFISS--------SVDDL--------SPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER   74 (211)
Q Consensus        11 ~~~~~~I~v~G~~~~GKssli~~l~~~--------~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~   74 (211)
                      ....++|+++|++++|||||+++|.+.        .+..+        ..+.+.+.......+......+.||||||+.+
T Consensus         8 ~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~   87 (405)
T 2c78_A            8 TKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHAD   87 (405)
T ss_dssp             -CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGG
T ss_pred             CCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHH
Confidence            346799999999999999999999873        22111        01234444444444545557889999999999


Q ss_pred             hccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCcc-EEEEeecCCCCCCccc---CHHHHHHHHHHc
Q 028300           75 FRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCV-KMLVGNKVDRDSERVV---SREEGIALAKEH  150 (211)
Q Consensus        75 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p-~viv~nK~Dl~~~~~v---~~~~~~~~~~~~  150 (211)
                      |.......+..+|++|+|+|+++.... .... +...+..    .++| +++++||+|+......   ...+...++..+
T Consensus        88 f~~~~~~~~~~aD~~ilVvda~~g~~~-qt~~-~l~~~~~----~~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~  161 (405)
T 2c78_A           88 YIKNMITGAAQMDGAILVVSAADGPMP-QTRE-HILLARQ----VGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQY  161 (405)
T ss_dssp             GHHHHHHHHTTCSSEEEEEETTTCCCH-HHHH-HHHHHHH----TTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHCCEEEEEEECCCCCcH-HHHH-HHHHHHH----cCCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHh
Confidence            988888889999999999999886432 2333 3344332    3678 8899999998642211   122344555555


Q ss_pred             C-----CeEEEeeccCCCc------------------HHHHHHHHHHHHH
Q 028300          151 G-----SLFLECSAKTREN------------------VEQCFEQLALKIM  177 (211)
Q Consensus       151 ~-----~~~~~~Sa~~~~g------------------v~~l~~~i~~~~~  177 (211)
                      +     ++++++||+++.|                  +.++++.|.+.+.
T Consensus       162 ~~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp  211 (405)
T 2c78_A          162 EFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIP  211 (405)
T ss_dssp             TSCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSC
T ss_pred             cccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcC
Confidence            4     6899999999987                  6666666665443

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=99.85  E-value=5.6e-22  Score=158.95  Aligned_cols=157  Identities=17%  Similarity=0.217  Sum_probs=104.2

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhhC--CCCCC----------------------------CCccceeeEEEEEEECCEE
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFISS--SVDDL----------------------------SPTIGVDFKIKLLTVAGKR   61 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~~~--~~~~~----------------------------~~~~~~~~~~~~~~~~~~~   61 (211)
                      ...++|+++|++++|||||+++|+..  .+...                            ....+.+.......+....
T Consensus         4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~   83 (435)
T 1jny_A            4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK   83 (435)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS
T ss_pred             CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCC
Confidence            35789999999999999999999864  22110                            0012333333333344455


Q ss_pred             EEEEEEeCCChhhhccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhh---ccCCC-ccEEEEeecCCCCCCc-
Q 028300           62 LKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLY---STNQD-CVKMLVGNKVDRDSER-  136 (211)
Q Consensus        62 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~-~p~viv~nK~Dl~~~~-  136 (211)
                      ..+.||||||+.+|...+...++.+|++|+|+|+++ .+|+.... |......+   ....+ .|+++++||+|+.+.. 
T Consensus        84 ~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~-~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~  161 (435)
T 1jny_A           84 YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMS-VEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPY  161 (435)
T ss_dssp             CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHS-TTCHHHHHHHHHHHTTCTTCEEEEECGGGSSSTT
T ss_pred             eEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-Cccccccc-cchHHHHHHHHHHHcCCCeEEEEEEcccCCCccc
Confidence            789999999999998888889999999999999998 56665433 22111111   01224 4689999999996521 


Q ss_pred             -c----cCHHHHHHHHHHcC-----CeEEEeeccCCCcHHHHHH
Q 028300          137 -V----VSREEGIALAKEHG-----SLFLECSAKTRENVEQCFE  170 (211)
Q Consensus       137 -~----v~~~~~~~~~~~~~-----~~~~~~Sa~~~~gv~~l~~  170 (211)
                       +    ...++...++...+     ++++++||++|.|+.++++
T Consensus       162 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~  205 (435)
T 1jny_A          162 DEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSE  205 (435)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCS
T ss_pred             cHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccccc
Confidence             1    12344556666655     6799999999999986554

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=99.85  E-value=1.3e-21  Score=159.44  Aligned_cols=118  Identities=17%  Similarity=0.229  Sum_probs=82.9

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhhCC------------------CCCC---CCccceeeEEEEEEECCEEEEEEEEeCC
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFISSS------------------VDDL---SPTIGVDFKIKLLTVAGKRLKLTIWDTA   70 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~~~~------------------~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~D~~   70 (211)
                      .+..+|+|+|++|+|||||+++|+...                  +...   ....+.+.......+...+..+.|||||
T Consensus        11 ~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTP   90 (528)
T 3tr5_A           11 AMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTP   90 (528)
T ss_dssp             HTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCC
T ss_pred             hcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECC
Confidence            456899999999999999999996211                  0000   0012222222222333345789999999


Q ss_pred             ChhhhccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCC
Q 028300           71 GQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSE  135 (211)
Q Consensus        71 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~  135 (211)
                      |+.+|...+...++.+|++|+|+|+++..+...... |.. +.    ..++|+++|+||+|+...
T Consensus        91 G~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~-~~~-~~----~~~iPiivviNK~Dl~~~  149 (528)
T 3tr5_A           91 GHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKL-MEV-CR----LRHTPIMTFINKMDRDTR  149 (528)
T ss_dssp             CSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHH-HHH-HH----TTTCCEEEEEECTTSCCS
T ss_pred             CchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHH-HHH-HH----HcCCCEEEEEeCCCCccc
Confidence            999998888999999999999999998665555443 432 22    347899999999998643

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=99.85  E-value=2e-21  Score=139.44  Aligned_cols=123  Identities=19%  Similarity=0.214  Sum_probs=87.7

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccC----C
Q 028300           11 YDLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRG----A   86 (211)
Q Consensus        11 ~~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~----~   86 (211)
                      ....++|+++|++|||||||+++|.+..+.....+...+.     ........+.+||+||+..+...+..++..    +
T Consensus        45 ~~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~  119 (193)
T 2ged_A           45 GSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLS-----AADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFV  119 (193)
T ss_dssp             -CCCCEEEEECCTTSSHHHHHHHHHHSSCC-----------------CCCCTTCSEEEETTCCBSSCCHHHHHHHHGGGE
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCce-----eeeecCCeEEEEECCCCchHHHHHHHHHHhhcccC
Confidence            3677999999999999999999999987643211111111     111245678999999998887777777665    8


Q ss_pred             cEEEEEEECC-ChhhHHHHHHHHHHHhhhhc--cCCCccEEEEeecCCCCCCccc
Q 028300           87 QGIILVYDVT-RRETFTNLSDVWAKEVDLYS--TNQDCVKMLVGNKVDRDSERVV  138 (211)
Q Consensus        87 d~~i~v~d~~-~~~s~~~~~~~~~~~~~~~~--~~~~~p~viv~nK~Dl~~~~~v  138 (211)
                      |++++|||++ +.+++..+...+...+....  ...++|+++|+||+|+.+...+
T Consensus       120 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~  174 (193)
T 2ged_A          120 KGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPP  174 (193)
T ss_dssp             EEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCH
T ss_pred             CEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCCH
Confidence            9999999999 88899888874444443221  2368999999999999765543

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=99.84  E-value=1.7e-20  Score=154.66  Aligned_cols=158  Identities=23%  Similarity=0.166  Sum_probs=107.3

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCC-----CccceeeEEEEE------------EECCEEEEEEEEeCCChhh
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFISSSVDDLS-----PTIGVDFKIKLL------------TVAGKRLKLTIWDTAGQER   74 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~-----~~~~~~~~~~~~------------~~~~~~~~~~l~D~~g~~~   74 (211)
                      .+.++|+++|++++|||||+++|.+..+....     ++.+..+.....            ........+.||||||+..
T Consensus         3 ~r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~   82 (594)
T 1g7s_A            3 IRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEA   82 (594)
T ss_dssp             ECCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSC
T ss_pred             CCCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHH
Confidence            35689999999999999999999876543222     222222211000            0000112589999999999


Q ss_pred             hccchhhhccCCcEEEEEEECCC---hhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccC------------
Q 028300           75 FRTLTSSYYRGAQGIILVYDVTR---RETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVS------------  139 (211)
Q Consensus        75 ~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~------------  139 (211)
                      |...+...++.+|++|+|+|+++   +++++.+..     +.    ..++|+++++||+|+.......            
T Consensus        83 F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~-----l~----~~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~  153 (594)
T 1g7s_A           83 FTTLRKRGGALADLAILIVDINEGFKPQTQEALNI-----LR----MYRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQ  153 (594)
T ss_dssp             CTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHH-----HH----HTTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTS
T ss_pred             HHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHH-----HH----HcCCeEEEEecccccccccccccCCchHHHHHHh
Confidence            99988888999999999999998   666655432     22    2478999999999986432110            


Q ss_pred             -H----------HHHHHHHHHcC---------------CeEEEeeccCCCcHHHHHHHHHHHHHh
Q 028300          140 -R----------EEGIALAKEHG---------------SLFLECSAKTRENVEQCFEQLALKIME  178 (211)
Q Consensus       140 -~----------~~~~~~~~~~~---------------~~~~~~Sa~~~~gv~~l~~~i~~~~~~  178 (211)
                       .          .+........+               ++++++||++|.|+++++++|...+..
T Consensus       154 ~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~~  218 (594)
T 1g7s_A          154 DIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQ  218 (594)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhccc
Confidence             0          01111111111               379999999999999999999987653

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=99.84  E-value=1.4e-21  Score=161.91  Aligned_cols=156  Identities=18%  Similarity=0.100  Sum_probs=102.4

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCC------------------------------ccceeeEEEEEEECCEE
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFISSSVDDLSP------------------------------TIGVDFKIKLLTVAGKR   61 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~   61 (211)
                      ...++|+++|++++|||||+++|++........                              ..|++.......+....
T Consensus       165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~  244 (611)
T 3izq_1          165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR  244 (611)
T ss_dssp             CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred             CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence            457899999999999999999998664311110                              12334333333444455


Q ss_pred             EEEEEEeCCChhhhccchhhhccCCcEEEEEEECCChhh---HHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCccc
Q 028300           62 LKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRET---FTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVV  138 (211)
Q Consensus        62 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v  138 (211)
                      ..+.||||||+.+|.......++.+|++|+|+|+++...   +..... +...+.........|+++|+||+|+.+....
T Consensus       245 ~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~q-t~e~l~~~~~lgi~~iIVVvNKiDl~~~~~~  323 (611)
T 3izq_1          245 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQ-TKEHMLLASSLGIHNLIIAMNKMDNVDWSQQ  323 (611)
T ss_dssp             CEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSH-HHHHHHHHHTTTCCEEEEEEECTTTTTTCHH
T ss_pred             ceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhH-HHHHHHHHHHcCCCeEEEEEecccccchhHH
Confidence            789999999999998888889999999999999987420   000001 1111111111223469999999999764332


Q ss_pred             CHH----HHHHHHHHc-----CCeEEEeeccCCCcHHHH
Q 028300          139 SRE----EGIALAKEH-----GSLFLECSAKTRENVEQC  168 (211)
Q Consensus       139 ~~~----~~~~~~~~~-----~~~~~~~Sa~~~~gv~~l  168 (211)
                      ..+    +...++...     +++++++||++|.|+.++
T Consensus       324 ~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el  362 (611)
T 3izq_1          324 RFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI  362 (611)
T ss_dssp             HHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred             HHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence            222    223333333     358999999999999876

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=99.83  E-value=3.5e-20  Score=145.66  Aligned_cols=119  Identities=17%  Similarity=0.132  Sum_probs=93.3

Q ss_pred             EEEEEEEeCCChhhhccchhhhccCCcEEEEEEECCC----------hhhHHHHHHHHHHHhhhhccCCCccEEEEeecC
Q 028300           61 RLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTR----------RETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKV  130 (211)
Q Consensus        61 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~  130 (211)
                      .+.+.+||++|+..++..|..++++++++|+|||+++          .+++.+... |...+.......++|++||+||+
T Consensus       216 ~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~-~~~~i~~~~~~~~~piiLvgNK~  294 (402)
T 1azs_C          216 KVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALN-LFKSIWNNRWLRTISVILFLNKQ  294 (402)
T ss_dssp             TEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHH-HHHHHHTCTTCSSCCEEEEEECH
T ss_pred             CccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHH-HHHHHHhcccCCCCeEEEEEECh
Confidence            3789999999999999999999999999999999999          889999988 55555433234689999999999


Q ss_pred             CCCCCcc---c---------------------------CHHHHHHHH-----HH--------cCCeEEEeeccCCCcHHH
Q 028300          131 DRDSERV---V---------------------------SREEGIALA-----KE--------HGSLFLECSAKTRENVEQ  167 (211)
Q Consensus       131 Dl~~~~~---v---------------------------~~~~~~~~~-----~~--------~~~~~~~~Sa~~~~gv~~  167 (211)
                      |+...+.   +                           ..+++..++     ..        ..+.+++|||+++.||++
T Consensus       295 DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~d~~nV~~  374 (402)
T 1azs_C          295 DLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRR  374 (402)
T ss_dssp             HHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTTCHHHHHH
T ss_pred             hhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEeecCcCHHH
Confidence            9843322   1                           134444443     21        245678999999999999


Q ss_pred             HHHHHHHHHHhcc
Q 028300          168 CFEQLALKIMEVP  180 (211)
Q Consensus       168 l~~~i~~~~~~~~  180 (211)
                      +|.++.+.+....
T Consensus       375 vF~~v~~~I~~~~  387 (402)
T 1azs_C          375 VFNDCRDIIQRMH  387 (402)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999988776543

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=99.83  E-value=1.6e-21  Score=157.47  Aligned_cols=156  Identities=20%  Similarity=0.185  Sum_probs=89.5

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhhCC--CCC----------------------C------CCccceeeEEEEEEECCEE
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFISSS--VDD----------------------L------SPTIGVDFKIKLLTVAGKR   61 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~~~~--~~~----------------------~------~~~~~~~~~~~~~~~~~~~   61 (211)
                      ...++|+++|++++|||||+++|+...  +..                      .      ....+.+.......+....
T Consensus        41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~  120 (467)
T 1r5b_A           41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH  120 (467)
T ss_dssp             CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS
T ss_pred             CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCC
Confidence            467899999999999999999997521  110                      0      0012222222211222234


Q ss_pred             EEEEEEeCCChhhhccchhhhccCCcEEEEEEECCChh---hHHHHHHHHHHHhhhhccCCCcc-EEEEeecCCCCCCc-
Q 028300           62 LKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRE---TFTNLSDVWAKEVDLYSTNQDCV-KMLVGNKVDRDSER-  136 (211)
Q Consensus        62 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~~~p-~viv~nK~Dl~~~~-  136 (211)
                      ..+.|||+||+.+|.......+..+|++|+|+|+++..   +|+.... +...+... ...++| +++++||+|+.... 
T Consensus       121 ~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~q-t~e~l~~~-~~~~vp~iivviNK~Dl~~~~~  198 (467)
T 1r5b_A          121 RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQ-TREHAVLA-RTQGINHLVVVINKMDEPSVQW  198 (467)
T ss_dssp             EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCC-HHHHHHHH-HHTTCSSEEEEEECTTSTTCSS
T ss_pred             eEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCc-HHHHHHHH-HHcCCCEEEEEEECccCCCccc
Confidence            67999999999999888888899999999999999852   2221111 22222211 234677 99999999995421 


Q ss_pred             -c----cCHHHHHHHHHHc-------CCeEEEeeccCCCcHHHHH
Q 028300          137 -V----VSREEGIALAKEH-------GSLFLECSAKTRENVEQCF  169 (211)
Q Consensus       137 -~----v~~~~~~~~~~~~-------~~~~~~~Sa~~~~gv~~l~  169 (211)
                       .    ....+...++...       +++++++||++|.|+.+++
T Consensus       199 ~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~  243 (467)
T 1r5b_A          199 SEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV  243 (467)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred             cHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence             1    1122345555554       4679999999999998766

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=99.83  E-value=4.5e-20  Score=134.08  Aligned_cols=162  Identities=17%  Similarity=0.166  Sum_probs=101.4

Q ss_pred             CCCceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhh----------hcc
Q 028300            9 NSYDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER----------FRT   77 (211)
Q Consensus         9 ~~~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~----------~~~   77 (211)
                      .......+|+++|++|||||||++++.+..+ ..+.++.|.+.....+.+.+   .+.+||+||...          +..
T Consensus        21 ~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~   97 (210)
T 1pui_A           21 LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQR   97 (210)
T ss_dssp             SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHH
T ss_pred             CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHH
Confidence            3456678999999999999999999998874 55566777665443333333   578999999632          222


Q ss_pred             chhhhc---cCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCccc--CHHHHHHHHHHcC-
Q 028300           78 LTSSYY---RGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVV--SREEGIALAKEHG-  151 (211)
Q Consensus        78 ~~~~~~---~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v--~~~~~~~~~~~~~-  151 (211)
                      ....++   ..++++++++|+++..+.....  +...+.    ..++|+++++||+|+....+.  ....+..++...+ 
T Consensus        98 ~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~--~~~~~~----~~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~  171 (210)
T 1pui_A           98 ALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQ--MIEWAV----DSNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNG  171 (210)
T ss_dssp             HHHHHHHHCTTEEEEEEEEETTSCCCHHHHH--HHHHHH----HTTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCS
T ss_pred             HHHHHHHhhhcccEEEEEEECCCCCchhHHH--HHHHHH----HcCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCC
Confidence            222333   5789999999998865543211  122222    247899999999998653221  1234444444443 


Q ss_pred             -CeEEEeeccCCCcHHHHHHHHHHHHHhc
Q 028300          152 -SLFLECSAKTRENVEQCFEQLALKIMEV  179 (211)
Q Consensus       152 -~~~~~~Sa~~~~gv~~l~~~i~~~~~~~  179 (211)
                       +.++++|++++.|+++++++|.+.+.+.
T Consensus       172 ~~~~~~~Sal~~~~~~~l~~~l~~~~~~~  200 (210)
T 1pui_A          172 DVQVETFSSLKKQGVDKLRQKLDTWFSEM  200 (210)
T ss_dssp             CEEEEECBTTTTBSHHHHHHHHHHHHC--
T ss_pred             CCceEEEeecCCCCHHHHHHHHHHHHhhc
Confidence             4689999999999999999998876543

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=99.82  E-value=2.6e-20  Score=160.69  Aligned_cols=161  Identities=14%  Similarity=0.047  Sum_probs=108.6

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHhhCC-------CC--------CCCCccceeeEEEEEEECCEEEEEEEEeCCChhhh
Q 028300           11 YDLSFKILLIGDSGVGKSSLLVSFISSS-------VD--------DLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERF   75 (211)
Q Consensus        11 ~~~~~~I~v~G~~~~GKssli~~l~~~~-------~~--------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~   75 (211)
                      ....++|+++|++++|||||+++|.+..       +.        ....+.|.+.....+.++.....+.||||||+.+|
T Consensus       293 ~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF  372 (1289)
T 3avx_A          293 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADY  372 (1289)
T ss_dssp             CCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHH
T ss_pred             cCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHH
Confidence            3467999999999999999999998641       10        11123344443333344445578999999999999


Q ss_pred             ccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCcc-EEEEeecCCCCCCccc---CHHHHHHHHHHcC
Q 028300           76 RTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCV-KMLVGNKVDRDSERVV---SREEGIALAKEHG  151 (211)
Q Consensus        76 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p-~viv~nK~Dl~~~~~v---~~~~~~~~~~~~~  151 (211)
                      .......+..+|++|+|+|+++....+ ... +...+..    .++| +++++||+|+.+....   ...+...++...+
T Consensus       373 ~~~mi~gas~AD~aILVVDAtdGv~~Q-TrE-hL~ll~~----lgIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G  446 (1289)
T 3avx_A          373 VKNMITGAAQMDGAILVVAATDGPMPQ-TRE-HILLGRQ----VGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYD  446 (1289)
T ss_dssp             HHHHHHTSCCCSEEEEEEETTTCSCTT-HHH-HHHHHHH----HTCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhhCCEEEEEEcCCccCcHH-HHH-HHHHHHH----cCCCeEEEEEeecccccchhhHHHHHHHHHHHHHhcc
Confidence            888888899999999999999853222 222 3333332    2678 7899999999653221   1234555666554


Q ss_pred             -----CeEEEeeccCC--------CcHHHHHHHHHHHHH
Q 028300          152 -----SLFLECSAKTR--------ENVEQCFEQLALKIM  177 (211)
Q Consensus       152 -----~~~~~~Sa~~~--------~gv~~l~~~i~~~~~  177 (211)
                           ++++++||++|        .|+.+++++|.+.+.
T Consensus       447 ~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip  485 (1289)
T 3avx_A          447 FPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIP  485 (1289)
T ss_dssp             SCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSC
T ss_pred             ccccceeEEEEEeccCCCCCccccccchhhHhHHhhhcC
Confidence                 68999999999        468888888776554

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=99.82  E-value=2.9e-21  Score=155.54  Aligned_cols=152  Identities=18%  Similarity=0.186  Sum_probs=100.9

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhhC--CCCCC----------------------------CCccceeeEEEEEEECCEE
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFISS--SVDDL----------------------------SPTIGVDFKIKLLTVAGKR   61 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~~~--~~~~~----------------------------~~~~~~~~~~~~~~~~~~~   61 (211)
                      ...++|+++|++++|||||+++|++.  .+...                            ....|.+.......+....
T Consensus         5 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~   84 (458)
T 1f60_A            5 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK   84 (458)
T ss_dssp             CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSS
T ss_pred             CceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCC
Confidence            35799999999999999999999864  12110                            0012222222222334445


Q ss_pred             EEEEEEeCCChhhhccchhhhccCCcEEEEEEECCChh---hHH---HHHHHHHHHhhhhccCCCcc-EEEEeecCCCCC
Q 028300           62 LKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRE---TFT---NLSDVWAKEVDLYSTNQDCV-KMLVGNKVDRDS  134 (211)
Q Consensus        62 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~---~~~~~~~~~~~~~~~~~~~p-~viv~nK~Dl~~  134 (211)
                      ..+.||||||+.+|.......+..+|++|+|+|+++..   +|+   .... ....+.    ..++| +++|+||+|+.+
T Consensus        85 ~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~-~~~~~~----~~~v~~iivviNK~Dl~~  159 (458)
T 1f60_A           85 YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTRE-HALLAF----TLGVRQLIVAVNKMDSVK  159 (458)
T ss_dssp             EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHH-HHHHHH----HTTCCEEEEEEECGGGGT
T ss_pred             ceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHH-HHHHHH----HcCCCeEEEEEEcccccc
Confidence            68999999999999888888999999999999999752   221   2222 112222    23555 899999999863


Q ss_pred             Cccc----CHHHHHHHHHHcC-----CeEEEeeccCCCcHHHH
Q 028300          135 ERVV----SREEGIALAKEHG-----SLFLECSAKTRENVEQC  168 (211)
Q Consensus       135 ~~~v----~~~~~~~~~~~~~-----~~~~~~Sa~~~~gv~~l  168 (211)
                      ....    ...+...++..++     ++++++||++|.|+.++
T Consensus       160 ~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~  202 (458)
T 1f60_A          160 WDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA  202 (458)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred             CCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence            2211    1233445555554     68999999999998754

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=99.82  E-value=3.1e-22  Score=161.48  Aligned_cols=153  Identities=22%  Similarity=0.277  Sum_probs=103.8

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEE
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIIL   91 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   91 (211)
                      +++.+|+++|++++|||||+++|....+.... ..+.+.......+...+..+.||||||+..|...+...+..+|++++
T Consensus         2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e-~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~f~~~~~~~~~~aD~aIL   80 (501)
T 1zo1_I            2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASGE-AGGITQHIGAYHVETENGMITFLDTPGHAAFTSMRARGAQATDIVVL   80 (501)
T ss_dssp             CCCCCEEEEESTTSSSHHHHHHHHHHHHSBTT-BCCCCCCSSCCCCCTTSSCCCEECCCTTTCCTTSBCSSSBSCSSEEE
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHcCCCcccc-CCCeeEeEEEEEEEECCEEEEEEECCCcHHHHHHHHHHHhhCCEEEE
Confidence            46789999999999999999999875542111 11111111111222233468999999999999988889999999999


Q ss_pred             EEECCC---hhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCc--ccCHHH--HHHHHHHcC--CeEEEeeccCC
Q 028300           92 VYDVTR---RETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSER--VVSREE--GIALAKEHG--SLFLECSAKTR  162 (211)
Q Consensus        92 v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~--~v~~~~--~~~~~~~~~--~~~~~~Sa~~~  162 (211)
                      |+|+++   +++.+.+.     .+    ...++|+++++||+|+....  .+....  ...+...++  ++++++||++|
T Consensus        81 VVda~~g~~~qT~e~l~-----~~----~~~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG  151 (501)
T 1zo1_I           81 VVAADDGVMPQTIEAIQ-----HA----KAAQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAG  151 (501)
T ss_dssp             EEETTTBSCTTTHHHHH-----HH----HHTTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTTTC
T ss_pred             EeecccCccHHHHHHHH-----HH----HhcCceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeeeec
Confidence            999988   44444332     11    13478999999999996432  111100  000111222  68999999999


Q ss_pred             CcHHHHHHHHHH
Q 028300          163 ENVEQCFEQLAL  174 (211)
Q Consensus       163 ~gv~~l~~~i~~  174 (211)
                      .|++++|++|..
T Consensus       152 ~gI~eLle~I~~  163 (501)
T 1zo1_I          152 TGIDELLDAILL  163 (501)
T ss_dssp             TTCTTHHHHTTT
T ss_pred             cCcchhhhhhhh
Confidence            999999999864

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=99.82  E-value=1.2e-20  Score=144.42  Aligned_cols=159  Identities=23%  Similarity=0.158  Sum_probs=101.7

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHhhCCCC-----CCCCccc----------------------eeeE------------
Q 028300           11 YDLSFKILLIGDSGVGKSSLLVSFISSSVD-----DLSPTIG----------------------VDFK------------   51 (211)
Q Consensus        11 ~~~~~~I~v~G~~~~GKssli~~l~~~~~~-----~~~~~~~----------------------~~~~------------   51 (211)
                      ....++|+|+|.+|||||||+|+|++..+.     .....++                      +++.            
T Consensus        23 ~~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~  102 (299)
T 2aka_B           23 DLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDR  102 (299)
T ss_dssp             TCCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHH
T ss_pred             CCCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHH
Confidence            456789999999999999999999988763     1111121                      1100            


Q ss_pred             -----------EEEEEEC-CEEEEEEEEeCCChh-------------hhccchhhhccCCcEEE-EEEECCChhhHHHHH
Q 028300           52 -----------IKLLTVA-GKRLKLTIWDTAGQE-------------RFRTLTSSYYRGAQGII-LVYDVTRRETFTNLS  105 (211)
Q Consensus        52 -----------~~~~~~~-~~~~~~~l~D~~g~~-------------~~~~~~~~~~~~~d~~i-~v~d~~~~~s~~~~~  105 (211)
                                 ...+.+. .....+.||||||..             .+......+++.++.++ +|+|+++..+..+..
T Consensus       103 i~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~  182 (299)
T 2aka_B          103 VTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL  182 (299)
T ss_dssp             HCSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHH
T ss_pred             hcccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHH
Confidence                       0000000 012579999999953             34455667788888666 799998754433332


Q ss_pred             HHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHH--cC-CeEEEeeccCCCcHHHHHHHHHH
Q 028300          106 DVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKE--HG-SLFLECSAKTRENVEQCFEQLAL  174 (211)
Q Consensus       106 ~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~--~~-~~~~~~Sa~~~~gv~~l~~~i~~  174 (211)
                      . +...+.    ..+.|+++|+||+|+.+...............  .+ .+++++||+++.|+++++++|.+
T Consensus       183 ~-~~~~~~----~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~  249 (299)
T 2aka_B          183 K-IAKEVD----PQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA  249 (299)
T ss_dssp             H-HHHHHC----TTCSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHH
T ss_pred             H-HHHHhC----CCCCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHH
Confidence            2 444333    35789999999999975543222222110001  12 36889999999999999999877

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=99.82  E-value=7.1e-20  Score=137.58  Aligned_cols=127  Identities=19%  Similarity=0.197  Sum_probs=84.1

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhcc-------
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYR-------   84 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~-------   84 (211)
                      ...++|+++|.+|+|||||+++|++..+....+..+++.......+...+..+.||||||+.++......+++       
T Consensus        34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~~~~~~~~~~i~~~l~  113 (262)
T 3def_A           34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVNHQALELIKGFLV  113 (262)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTT
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECCeeEEEEECCCCCCcccchHHHHHHHHHHHh
Confidence            3689999999999999999999999876333333333333223233223458999999998776554433332       


Q ss_pred             --CCcEEEEEEECCChhhHHHHHHHHHHHhhhhcc-CCCccEEEEeecCCCCCCcccC
Q 028300           85 --GAQGIILVYDVTRRETFTNLSDVWAKEVDLYST-NQDCVKMLVGNKVDRDSERVVS  139 (211)
Q Consensus        85 --~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~~p~viv~nK~Dl~~~~~v~  139 (211)
                        .+|++++|++++... +......|...+..... ....|+++|+||+|+.+.+...
T Consensus       114 ~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~~~~~  170 (262)
T 3def_A          114 NRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPDELS  170 (262)
T ss_dssp             TCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCSTTCC
T ss_pred             cCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCCCCcc
Confidence              789999999988654 33333225555554311 2235999999999996544433

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=99.80  E-value=7e-19  Score=148.02  Aligned_cols=164  Identities=14%  Similarity=0.159  Sum_probs=108.6

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcccee--------------eE--------------------------
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVD--------------FK--------------------------   51 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~--------------~~--------------------------   51 (211)
                      ...++|+|+|.+|+|||||+|+|++.........+++.              ..                          
T Consensus        67 ~~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~  146 (695)
T 2j69_A           67 QGVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEA  146 (695)
T ss_dssp             HCCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHH
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHH
Confidence            46789999999999999999999988763332222221              00                          


Q ss_pred             ---------------EEEEEECCEE--EEEEEEeCCChhhh---ccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHH
Q 028300           52 ---------------IKLLTVAGKR--LKLTIWDTAGQERF---RTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKE  111 (211)
Q Consensus        52 ---------------~~~~~~~~~~--~~~~l~D~~g~~~~---~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~  111 (211)
                                     ...+......  ..+.||||||....   ......+++++|++|+|+|+++..+..+... |...
T Consensus       147 ~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~-l~~~  225 (695)
T 2j69_A          147 KKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRY-LENY  225 (695)
T ss_dssp             HHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHH-HHHH
T ss_pred             HHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHH-HHHH
Confidence                           0000000000  35899999996653   3445678899999999999998877766654 5544


Q ss_pred             hhhhccCCCccEEEEeecCCCCCCcccCH------H----HHHHH----H-HH--------cCCeEEEeecc--------
Q 028300          112 VDLYSTNQDCVKMLVGNKVDRDSERVVSR------E----EGIAL----A-KE--------HGSLFLECSAK--------  160 (211)
Q Consensus       112 ~~~~~~~~~~p~viv~nK~Dl~~~~~v~~------~----~~~~~----~-~~--------~~~~~~~~Sa~--------  160 (211)
                      +..    .+.|+++|+||+|+.....+..      +    .....    . ..        ...+++++||+        
T Consensus       226 l~~----~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~  301 (695)
T 2j69_A          226 IKG----RGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLK  301 (695)
T ss_dssp             TTT----SCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHH
T ss_pred             HHh----hCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhcc
Confidence            432    3678999999999854321111      0    11111    1 11        12369999999        


Q ss_pred             ------CCCcHHHHHHHHHHHHHhcc
Q 028300          161 ------TRENVEQCFEQLALKIMEVP  180 (211)
Q Consensus       161 ------~~~gv~~l~~~i~~~~~~~~  180 (211)
                            ++.|++++++++.+.+...+
T Consensus       302 ~~~~~~~~~Gi~~L~~~L~~~l~~~~  327 (695)
T 2j69_A          302 NPQADLDGTGFPKFMDSLNTFLTRER  327 (695)
T ss_dssp             CTTCCCTTSSHHHHHHHHHHHHHHTH
T ss_pred             CchhhhhccCHHHHHHHHHHHHHHhH
Confidence                  99999999999988776544

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=99.79  E-value=3.7e-19  Score=134.27  Aligned_cols=127  Identities=20%  Similarity=0.174  Sum_probs=85.4

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchh-------h--h
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTS-------S--Y   82 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~-------~--~   82 (211)
                      ...++|+++|.+|+|||||+|+|++..+....+..+++.....+.+......+.+|||||+.++.....       .  .
T Consensus        37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~  116 (270)
T 1h65_A           37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLL  116 (270)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTT
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHhh
Confidence            358999999999999999999999887644444455444444444434456799999999866543221       1  1


Q ss_pred             ccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhcc-CCCccEEEEeecCCCCCCcccC
Q 028300           83 YRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYST-NQDCVKMLVGNKVDRDSERVVS  139 (211)
Q Consensus        83 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~~p~viv~nK~Dl~~~~~v~  139 (211)
                      .+.+|+++||+|++.. ++......|...+..... ....|+++|+||+|+.+.+...
T Consensus       117 ~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~~~~  173 (270)
T 1h65_A          117 DKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLP  173 (270)
T ss_dssp             TCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGGGCC
T ss_pred             cCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcCCCC
Confidence            3478999999998753 333333235555543311 1237999999999997655433

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=99.79  E-value=3e-21  Score=159.59  Aligned_cols=146  Identities=18%  Similarity=0.121  Sum_probs=80.6

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhhCCC--C----------------------------CCCCccceeeEEEEEEECCEE
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFISSSV--D----------------------------DLSPTIGVDFKIKLLTVAGKR   61 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~~~~~--~----------------------------~~~~~~~~~~~~~~~~~~~~~   61 (211)
                      ...++|+++|++++|||||+++|+....  .                            ......|++.......+....
T Consensus       175 k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~~  254 (592)
T 3mca_A          175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESDK  254 (592)
T ss_dssp             CCEEEEEEECCSSSTHHHHHHHHHHHHHCC--------------------------------------------------
T ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeCC
Confidence            4578999999999999999999964210  0                            000123445444444555556


Q ss_pred             EEEEEEeCCChhhhccchhhhccCCcEEEEEEECCCh----------hhHHHHHHHHHHHhhhhccCCCcc-EEEEeecC
Q 028300           62 LKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRR----------ETFTNLSDVWAKEVDLYSTNQDCV-KMLVGNKV  130 (211)
Q Consensus        62 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~~~~~~p-~viv~nK~  130 (211)
                      ..+.||||||+.+|.......+..+|++|+|+|+++.          ++.+.+.     .+.    ..++| +++|+||+
T Consensus       255 ~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~-----~~~----~lgip~iIvviNKi  325 (592)
T 3mca_A          255 KIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAY-----LLR----ALGISEIVVSVNKL  325 (592)
T ss_dssp             ----CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHH-----HHH----HSSCCCEEEEEECG
T ss_pred             eEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHH-----HHH----HcCCCeEEEEEecc
Confidence            7899999999999988888889999999999999853          2222221     122    23555 89999999


Q ss_pred             CCCCCcccCH----HHHHHHH-HHcCC-----eEEEeeccCCCcHH
Q 028300          131 DRDSERVVSR----EEGIALA-KEHGS-----LFLECSAKTRENVE  166 (211)
Q Consensus       131 Dl~~~~~v~~----~~~~~~~-~~~~~-----~~~~~Sa~~~~gv~  166 (211)
                      |+.+......    .+...+. ...++     +++++||++|.|+.
T Consensus       326 Dl~~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~  371 (592)
T 3mca_A          326 DLMSWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLI  371 (592)
T ss_dssp             GGGTTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSC
T ss_pred             ccccccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccc
Confidence            9865322111    2233333 33343     79999999999997

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=99.79  E-value=1.4e-18  Score=141.89  Aligned_cols=118  Identities=15%  Similarity=0.197  Sum_probs=79.3

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhhCCC--CC-------------------CCCccceeeEEEEEEECCEEEEEEEEeCC
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFISSSV--DD-------------------LSPTIGVDFKIKLLTVAGKRLKLTIWDTA   70 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~~~~~--~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~l~D~~   70 (211)
                      .+..+|+++|++|+|||||+++|+...-  ..                   ...+.+.+.......+......+.|||||
T Consensus        11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTP   90 (529)
T 2h5e_A           11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTP   90 (529)
T ss_dssp             HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCC
T ss_pred             cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECC
Confidence            4578999999999999999999986321  00                   00122222222222233345789999999


Q ss_pred             ChhhhccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCC
Q 028300           71 GQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSE  135 (211)
Q Consensus        71 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~  135 (211)
                      |+.+|.......++.+|++|+|+|+++...... .. +...+    ...++|+++++||+|+...
T Consensus        91 G~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t-~~-~~~~~----~~~~ipiivviNK~Dl~~~  149 (529)
T 2h5e_A           91 GHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRT-RK-LMEVT----RLRDTPILTFMNKLDRDIR  149 (529)
T ss_dssp             CSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHH-HH-HHHHH----TTTTCCEEEEEECTTSCCS
T ss_pred             CChhHHHHHHHHHHHCCEEEEEEeCCccchHHH-HH-HHHHH----HHcCCCEEEEEcCcCCccc
Confidence            999988878888999999999999987532221 22 22222    2358899999999998643

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=99.78  E-value=1.5e-18  Score=145.49  Aligned_cols=118  Identities=12%  Similarity=0.130  Sum_probs=82.2

Q ss_pred             CCceeeEEEEEcCCCCcHHHHHHHHhhCCCC-CCCC----------------ccceeeEEEEEEECCEEEEEEEEeCCCh
Q 028300           10 SYDLSFKILLIGDSGVGKSSLLVSFISSSVD-DLSP----------------TIGVDFKIKLLTVAGKRLKLTIWDTAGQ   72 (211)
Q Consensus        10 ~~~~~~~I~v~G~~~~GKssli~~l~~~~~~-~~~~----------------~~~~~~~~~~~~~~~~~~~~~l~D~~g~   72 (211)
                      ..+...+|+++|+.|+|||||+++|++.... ....                ..+.++......+....+.+++|||||+
T Consensus         5 ~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~   84 (665)
T 2dy1_A            5 GGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGY   84 (665)
T ss_dssp             -CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCS
T ss_pred             ccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCc
Confidence            3456789999999999999999999854321 0000                1123333333333334578999999999


Q ss_pred             hhhccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCC
Q 028300           73 ERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRD  133 (211)
Q Consensus        73 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~  133 (211)
                      .+|...+...++.+|++++|+|+++....... . +...+..    .++|+++++||+|+.
T Consensus        85 ~~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~-~-~~~~~~~----~~ip~ilv~NKiD~~  139 (665)
T 2dy1_A           85 GDFVGEIRGALEAADAALVAVSAEAGVQVGTE-R-AWTVAER----LGLPRMVVVTKLDKG  139 (665)
T ss_dssp             GGGHHHHHHHHHHCSEEEEEEETTTCSCHHHH-H-HHHHHHH----TTCCEEEEEECGGGC
T ss_pred             cchHHHHHHHHhhcCcEEEEEcCCcccchhHH-H-HHHHHHH----ccCCEEEEecCCchh
Confidence            99988888899999999999998875433222 2 3333332    378999999999986

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=99.78  E-value=1.8e-18  Score=137.02  Aligned_cols=160  Identities=22%  Similarity=0.207  Sum_probs=107.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCCC--CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhh----hccchhh---hccCC
Q 028300           16 KILLIGDSGVGKSSLLVSFISSSV--DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER----FRTLTSS---YYRGA   86 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~----~~~~~~~---~~~~~   86 (211)
                      .|+++|++|||||||++.+.+...  ..+..+ ........+...+ ...+.+||+||..+    +..+...   .+..+
T Consensus       159 ~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ft-Tl~p~~G~V~~~~-~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era  236 (416)
T 1udx_A          159 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFT-TLSPNLGVVEVSE-EERFTLADIPGIIEGASEGKGLGLEFLRHIART  236 (416)
T ss_dssp             SEEEECCGGGCHHHHHHHHCSSCCEECCCTTC-SSCCEEEEEECSS-SCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHHcCCccccCcccc-eecceeeEEEecC-cceEEEEeccccccchhhhhhhhHHHHHHHHHH
Confidence            479999999999999999997753  111111 1111111223222 25688999999632    2222222   24578


Q ss_pred             cEEEEEEECCChhhHHHHHHHHHHHhhhhcc-CCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcH
Q 028300           87 QGIILVYDVTRRETFTNLSDVWAKEVDLYST-NQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENV  165 (211)
Q Consensus        87 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv  165 (211)
                      +.+++++|++ ...+.++.. |...+..+.. ....|.++|+||+|+...  .............+.+++.+||+++.|+
T Consensus       237 ~~lL~vvDls-~~~~~~ls~-g~~el~~la~aL~~~P~ILVlNKlDl~~~--~~~~~l~~~l~~~g~~vi~iSA~~g~gi  312 (416)
T 1udx_A          237 RVLLYVLDAA-DEPLKTLET-LRKEVGAYDPALLRRPSLVALNKVDLLEE--EAVKALADALAREGLAVLPVSALTGAGL  312 (416)
T ss_dssp             SEEEEEEETT-SCHHHHHHH-HHHHHHHHCHHHHHSCEEEEEECCTTSCH--HHHHHHHHHHHTTTSCEEECCTTTCTTH
T ss_pred             HhhhEEeCCc-cCCHHHHHH-HHHHHHHHhHHhhcCCEEEEEECCChhhH--HHHHHHHHHHHhcCCeEEEEECCCccCH
Confidence            9999999998 556666665 5555544311 236799999999998653  2233344445556789999999999999


Q ss_pred             HHHHHHHHHHHHhccc
Q 028300          166 EQCFEQLALKIMEVPS  181 (211)
Q Consensus       166 ~~l~~~i~~~~~~~~~  181 (211)
                      ++++++|.+.+.+.+.
T Consensus       313 ~eL~~~i~~~l~~~~~  328 (416)
T 1udx_A          313 PALKEALHALVRSTPP  328 (416)
T ss_dssp             HHHHHHHHHHHHTSCC
T ss_pred             HHHHHHHHHHHHhccc
Confidence            9999999999987654

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=99.77  E-value=2e-18  Score=145.24  Aligned_cols=120  Identities=17%  Similarity=0.248  Sum_probs=82.9

Q ss_pred             CCCceeeEEEEEcCCCCcHHHHHHHHhhCC--CCC---C------C------CccceeeEEEEEEECCEEEEEEEEeCCC
Q 028300            9 NSYDLSFKILLIGDSGVGKSSLLVSFISSS--VDD---L------S------PTIGVDFKIKLLTVAGKRLKLTIWDTAG   71 (211)
Q Consensus         9 ~~~~~~~~I~v~G~~~~GKssli~~l~~~~--~~~---~------~------~~~~~~~~~~~~~~~~~~~~~~l~D~~g   71 (211)
                      ....+..+|+|+|++|+|||||+++|+...  +..   .      .      ...+.+.......+......+.||||||
T Consensus         7 ~~~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG   86 (691)
T 1dar_A            7 YDLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPG   86 (691)
T ss_dssp             CCGGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCS
T ss_pred             CccccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcC
Confidence            345678999999999999999999998421  100   0      0      0112222211122222347899999999


Q ss_pred             hhhhccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCC
Q 028300           72 QERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDS  134 (211)
Q Consensus        72 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~  134 (211)
                      +.+|...+...++.+|++|+|+|+++..+...... |... .    ..++|+++|+||+|+..
T Consensus        87 ~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~-~~~~-~----~~~~p~ivviNKiD~~~  143 (691)
T 1dar_A           87 HVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETV-WRQA-E----KYKVPRIAFANKMDKTG  143 (691)
T ss_dssp             STTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHH-HHHH-H----HTTCCEEEEEECTTSTT
T ss_pred             ccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHH-HHHH-H----HcCCCEEEEEECCCccc
Confidence            99988888899999999999999998776665544 5432 2    23899999999999854

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=99.77  E-value=1e-18  Score=134.67  Aligned_cols=166  Identities=17%  Similarity=0.158  Sum_probs=99.4

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHhhCCC-CC----CCCccceeeEEE--------------------------------
Q 028300           11 YDLSFKILLIGDSGVGKSSLLVSFISSSV-DD----LSPTIGVDFKIK--------------------------------   53 (211)
Q Consensus        11 ~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~----~~~~~~~~~~~~--------------------------------   53 (211)
                      .....+|+|+|.+|+|||||+|+|++..+ +.    ....++......                                
T Consensus        21 ~~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (315)
T 1jwy_B           21 PLDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIRE  100 (315)
T ss_dssp             TTCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHH
T ss_pred             CCCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHH
Confidence            34567999999999999999999998876 21    111111001100                                


Q ss_pred             ---------------------EEE-ECCEEEEEEEEeCCChhh-------------hccchhhhccCCcEEEEEEECCCh
Q 028300           54 ---------------------LLT-VAGKRLKLTIWDTAGQER-------------FRTLTSSYYRGAQGIILVYDVTRR   98 (211)
Q Consensus        54 ---------------------~~~-~~~~~~~~~l~D~~g~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~   98 (211)
                                           .+. .......+.||||||...             +......++..+|++++|+|..+.
T Consensus       101 ~i~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~  180 (315)
T 1jwy_B          101 EIIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANT  180 (315)
T ss_dssp             HHHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSS
T ss_pred             HHHHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCc
Confidence                                 000 001124689999999643             344566788999999999997432


Q ss_pred             hhH-HHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeec---cC---CCcHHHHHHH
Q 028300           99 ETF-TNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSA---KT---RENVEQCFEQ  171 (211)
Q Consensus        99 ~s~-~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa---~~---~~gv~~l~~~  171 (211)
                      ... ..... +...+.    ..+.|+++|+||+|+........+........++..++++++   .+   +.|+.++++.
T Consensus       181 ~~~~~~~~~-i~~~~~----~~~~~~i~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~  255 (315)
T 1jwy_B          181 DLANSDALQ-LAKEVD----PEGKRTIGVITKLDLMDKGTDAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKS  255 (315)
T ss_dssp             CSTTCSHHH-HHHHHC----SSCSSEEEEEECTTSSCSSCCCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHH
T ss_pred             chhhhHHHH-HHHHhC----CCCCcEEEEEcCcccCCcchHHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHH
Confidence            211 11111 233332    357899999999999755432222221100112245666554   44   7899999999


Q ss_pred             HHHHHHhccc
Q 028300          172 LALKIMEVPS  181 (211)
Q Consensus       172 i~~~~~~~~~  181 (211)
                      +.+.+.....
T Consensus       256 ~~~~~~~~~~  265 (315)
T 1jwy_B          256 EILYFKNHPI  265 (315)
T ss_dssp             HHHHHHTCTT
T ss_pred             HHHHHhCCCc
Confidence            8887766544

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=99.75  E-value=6.1e-19  Score=138.25  Aligned_cols=155  Identities=16%  Similarity=0.133  Sum_probs=99.7

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccc---eee---------------------------------------
Q 028300           14 SFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIG---VDF---------------------------------------   50 (211)
Q Consensus        14 ~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~---~~~---------------------------------------   50 (211)
                      -.+|+|+|++|||||||+++|.+..+ +.......   +..                                       
T Consensus        34 lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~  113 (360)
T 3t34_A           34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETDR  113 (360)
T ss_dssp             CCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHHH
Confidence            34999999999999999999999876 22111110   000                                       


Q ss_pred             ----------EEEEEEE-CCEEEEEEEEeCCChhhh-------------ccchhhhccCCcEEEEEEECCChhhHHHHHH
Q 028300           51 ----------KIKLLTV-AGKRLKLTIWDTAGQERF-------------RTLTSSYYRGAQGIILVYDVTRRETFTNLSD  106 (211)
Q Consensus        51 ----------~~~~~~~-~~~~~~~~l~D~~g~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~  106 (211)
                                ......+ ......+.+|||||...+             ......++.++|++|+|+|..+.+.....  
T Consensus       114 ~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~--  191 (360)
T 3t34_A          114 ETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSD--  191 (360)
T ss_dssp             TSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCH--
T ss_pred             hcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHH--
Confidence                      0000000 011235899999997654             45567788999999999987654322211  


Q ss_pred             HHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHHHHH
Q 028300          107 VWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQL  172 (211)
Q Consensus       107 ~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i  172 (211)
                       |...+... ...+.|+++|+||+|+.+......+....+...++.+|+.+++..+.++++.+..+
T Consensus       192 -~~~l~~~~-~~~~~~~i~V~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~~i~~~~~~~  255 (360)
T 3t34_A          192 -AIKISREV-DPSGDRTFGVLTKIDLMDKGTDAVEILEGRSFKLKYPWVGVVNRSQADINKNVDMI  255 (360)
T ss_dssp             -HHHHHHHS-CTTCTTEEEEEECGGGCCTTCCSHHHHTTSSSCCSSCCEEECCCCHHHHHTTCCHH
T ss_pred             -HHHHHHHh-cccCCCEEEEEeCCccCCCcccHHHHHcCccccccCCeEEEEECChHHhccCCCHH
Confidence             33333322 34578999999999997655544444433334466789999999988887765543

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=99.75  E-value=1.5e-18  Score=137.09  Aligned_cols=83  Identities=23%  Similarity=0.261  Sum_probs=47.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcccee----eEEEEE-------------------EECC-EEEEEEEEeCC
Q 028300           15 FKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVD----FKIKLL-------------------TVAG-KRLKLTIWDTA   70 (211)
Q Consensus        15 ~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~----~~~~~~-------------------~~~~-~~~~~~l~D~~   70 (211)
                      ++|+++|.+|||||||+|+|.+... .....++++    .....+                   .+.+ ....+.|||+|
T Consensus         1 ~kI~ivG~pnvGKSTL~n~L~~~~~-~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtp   79 (397)
T 1wxq_A            1 MEIGVVGKPNVGKSTFFSAATLVDV-EIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVA   79 (397)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC---------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCC-cccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECC
Confidence            5899999999999999999998763 211111111    111111                   1122 25789999999


Q ss_pred             Chhh----hccchh---hhccCCcEEEEEEECCCh
Q 028300           71 GQER----FRTLTS---SYYRGAQGIILVYDVTRR   98 (211)
Q Consensus        71 g~~~----~~~~~~---~~~~~~d~~i~v~d~~~~   98 (211)
                      |...    ...+..   ..++.+|++++|+|+++.
T Consensus        80 G~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~  114 (397)
T 1wxq_A           80 GLVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK  114 (397)
T ss_dssp             ---------------CCCSSTTCSEEEEEEETTCC
T ss_pred             CcccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence            9753    222222   456899999999999875

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=99.74  E-value=1.3e-18  Score=133.06  Aligned_cols=163  Identities=18%  Similarity=0.267  Sum_probs=85.9

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHhhC-CCC-CCCC------ccceeeEEEEEEE--CCEEEEEEEEeCCCh-------h
Q 028300           11 YDLSFKILLIGDSGVGKSSLLVSFISS-SVD-DLSP------TIGVDFKIKLLTV--AGKRLKLTIWDTAGQ-------E   73 (211)
Q Consensus        11 ~~~~~~I~v~G~~~~GKssli~~l~~~-~~~-~~~~------~~~~~~~~~~~~~--~~~~~~~~l~D~~g~-------~   73 (211)
                      ....++|+++|++|+|||||+++|++. .+. ...+      +.........+.+  .+....+++||++|.       +
T Consensus        15 ~~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e   94 (301)
T 2qnr_A           15 KGFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRD   94 (301)
T ss_dssp             ---CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC----------
T ss_pred             cCCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHH
Confidence            356789999999999999999998865 332 1111      1111111122222  233468899999997       4


Q ss_pred             hhccchh-------hhcc-------------CCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCC
Q 028300           74 RFRTLTS-------SYYR-------------GAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRD  133 (211)
Q Consensus        74 ~~~~~~~-------~~~~-------------~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~  133 (211)
                      .+..+..       .+++             .+++++|+.+.+.. +++.....++..+     ....|+++|+||.|+.
T Consensus        95 ~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~-~Ld~~~~~~l~~l-----~~~~~iilV~~K~Dl~  168 (301)
T 2qnr_A           95 CFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGH-GLKPLDVAFMKAI-----HNKVNIVPVIAKADTL  168 (301)
T ss_dssp             -CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSS-SCCHHHHHHHHHH-----TTTSCEEEEECCGGGS
T ss_pred             HHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCccc-CCCHHHHHHHHHH-----HhcCCEEEEEEeCCCC
Confidence            4443332       2222             23445555554321 2222221122222     2467999999999987


Q ss_pred             CCccc--CHHHHHHHHHHcCCeEEEeeccCCCcHHHHHHHHHHHHHhcc
Q 028300          134 SERVV--SREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIMEVP  180 (211)
Q Consensus       134 ~~~~v--~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~~~~~~  180 (211)
                      ..+++  ..+++.+++..++++++++||+++ +++++|.++.+.+.+..
T Consensus       169 ~~~e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~~~  216 (301)
T 2qnr_A          169 TLKERERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLKASI  216 (301)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCCCCCCC----------CHHHHHHHHTTC
T ss_pred             CHHHHHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhhcCC
Confidence            65443  235667778888999999999999 99999999999887654

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=99.74  E-value=8e-17  Score=135.66  Aligned_cols=118  Identities=15%  Similarity=0.168  Sum_probs=82.0

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHhhCC--CCCC---C------------CccceeeEEEE--EEEC-----CEEEEEEE
Q 028300           11 YDLSFKILLIGDSGVGKSSLLVSFISSS--VDDL---S------------PTIGVDFKIKL--LTVA-----GKRLKLTI   66 (211)
Q Consensus        11 ~~~~~~I~v~G~~~~GKssli~~l~~~~--~~~~---~------------~~~~~~~~~~~--~~~~-----~~~~~~~l   66 (211)
                      .++..+|+|+|+.|+|||||+++|+...  +...   .            ...+.+.....  +.+.     +..+.+.|
T Consensus         7 ~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~l   86 (704)
T 2rdo_7            7 IARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINI   86 (704)
T ss_pred             cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEE
Confidence            4567899999999999999999997531  1110   0            01222322222  2221     23388999


Q ss_pred             EeCCChhhhccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCC
Q 028300           67 WDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDS  134 (211)
Q Consensus        67 ~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~  134 (211)
                      |||||+.+|...+...++.+|++|+|+|+++......... |...     ...++|+++++||+|+..
T Consensus        87 iDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~-~~~~-----~~~~ip~ilviNKiD~~~  148 (704)
T 2rdo_7           87 IDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETV-WRQA-----NKYKVPRIAFVNKMDRMG  148 (704)
T ss_pred             EeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHH-HHHH-----HHcCCCEEEEEeCCCccc
Confidence            9999999998888889999999999999998654433332 4322     234789999999999854

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=99.74  E-value=2.1e-17  Score=139.04  Aligned_cols=119  Identities=16%  Similarity=0.210  Sum_probs=81.7

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHhh--CCCCC---CC------C------ccceeeEEEEEEECCEEEEEEEEeCCChh
Q 028300           11 YDLSFKILLIGDSGVGKSSLLVSFIS--SSVDD---LS------P------TIGVDFKIKLLTVAGKRLKLTIWDTAGQE   73 (211)
Q Consensus        11 ~~~~~~I~v~G~~~~GKssli~~l~~--~~~~~---~~------~------~~~~~~~~~~~~~~~~~~~~~l~D~~g~~   73 (211)
                      .++..+|+|+|++|+|||||+++|+.  +.+..   ..      .      ..+++.......+......+.||||||+.
T Consensus         7 ~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~   86 (693)
T 2xex_A            7 LEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHV   86 (693)
T ss_dssp             STTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCS
T ss_pred             cccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCc
Confidence            45678999999999999999999985  22210   00      0      11222111111222234679999999999


Q ss_pred             hhccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCC
Q 028300           74 RFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSE  135 (211)
Q Consensus        74 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~  135 (211)
                      ++...+...++.+|++|+|+|+++..+...... |.. +..    .++|+++|+||+|+...
T Consensus        87 df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~-~~~-~~~----~~~p~ilviNK~Dl~~~  142 (693)
T 2xex_A           87 DFTVEVERSLRVLDGAVTVLDAQSGVEPQTETV-WRQ-ATT----YGVPRIVFVNKMDKLGA  142 (693)
T ss_dssp             SCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHH-HHH-HHH----TTCCEEEEEECTTSTTC
T ss_pred             chHHHHHHHHHHCCEEEEEECCCCCCcHHHHHH-HHH-HHH----cCCCEEEEEECCCcccc
Confidence            888888889999999999999998766555543 443 222    37899999999998643

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.74  E-value=5.6e-18  Score=134.22  Aligned_cols=162  Identities=17%  Similarity=0.235  Sum_probs=82.6

Q ss_pred             CCceeeEEEEEcCCCCcHHHHHHHHhhCCCC-CCCC------ccceeeEEEEEEE--CCEEEEEEEEeCCChhhhc----
Q 028300           10 SYDLSFKILLIGDSGVGKSSLLVSFISSSVD-DLSP------TIGVDFKIKLLTV--AGKRLKLTIWDTAGQERFR----   76 (211)
Q Consensus        10 ~~~~~~~I~v~G~~~~GKssli~~l~~~~~~-~~~~------~~~~~~~~~~~~~--~~~~~~~~l~D~~g~~~~~----   76 (211)
                      -....++|+|+|++|+|||||++.|++..+. ....      ..........+.+  .+....+++||++|...+.    
T Consensus        27 l~~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~  106 (418)
T 2qag_C           27 KRGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSN  106 (418)
T ss_dssp             C-CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC----------
T ss_pred             ecCCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchh
Confidence            3456688999999999999999999987652 1110      0011111112222  2223478999999965431    


Q ss_pred             ---c------------------chhhhccCCcEEEEEEECCCh-hhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCC
Q 028300           77 ---T------------------LTSSYYRGAQGIILVYDVTRR-ETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDS  134 (211)
Q Consensus        77 ---~------------------~~~~~~~~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~  134 (211)
                         .                  +...++..+++.+++|..+.- .++......|+..+.     .++|+++|+||+|+..
T Consensus       107 ~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~-----~~v~iIlVinK~Dll~  181 (418)
T 2qag_C          107 CWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH-----EKVNIIPLIAKADTLT  181 (418)
T ss_dssp             -CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT-----TTSEEEEEEESTTSSC
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh-----ccCcEEEEEEcccCcc
Confidence               1                  112344555544444443322 233333323555543     3789999999999976


Q ss_pred             CcccCH--HHHHHHHHHcCCeEEEeeccCCCcHHHHHHHHHHHH
Q 028300          135 ERVVSR--EEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKI  176 (211)
Q Consensus       135 ~~~v~~--~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~~  176 (211)
                      .+++..  ..+...+..++++++++|+.++.++.++|..+.+.+
T Consensus       182 ~~ev~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~i  225 (418)
T 2qag_C          182 PEECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRL  225 (418)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCCCCCCC-----------------C
T ss_pred             HHHHHHHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHhhC
Confidence            555544  556677778899999999999999998887776643

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=99.71  E-value=6.4e-18  Score=129.21  Aligned_cols=132  Identities=18%  Similarity=0.124  Sum_probs=102.9

Q ss_pred             HHHHHHhhCCC--CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEEEEECCChh-hHHHHH
Q 028300           29 SLLVSFISSSV--DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRE-TFTNLS  105 (211)
Q Consensus        29 sli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~  105 (211)
                      +|+.++..+.|  ..+.||.|..+. ..  ..... .+.+||+  +++++.+++.+++++|++|+|||+++++ ++..+.
T Consensus        32 sl~~~~~~~~f~~~~~~pTiGd~~~-~~--~~~~~-~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~  105 (301)
T 1u0l_A           32 ERILCKLRGKFRLQNLKIYVGDRVE-YT--PDETG-SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIID  105 (301)
T ss_dssp             CEEEEEECGGGTTTTCCCCTTCEEE-EE--CCCSS-SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHH
T ss_pred             cEEEEEEcccccccCCCCCCccEEE-EE--EcCCC-eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHH
Confidence            67888887777  457788885544 22  22222 7899999  8889999999999999999999999987 676666


Q ss_pred             HHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcC--CeEEEeeccCCCcHHHHHHHHH
Q 028300          106 DVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHG--SLFLECSAKTRENVEQCFEQLA  173 (211)
Q Consensus       106 ~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~--~~~~~~Sa~~~~gv~~l~~~i~  173 (211)
                      . |+..+..    .++|+++|+||+|+.+.+.+  ++...++..++  ++++++||+++.|++++|.++.
T Consensus       106 ~-~l~~~~~----~~~piilv~NK~DL~~~~~v--~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~  168 (301)
T 1u0l_A          106 K-FLVLAEK----NELETVMVINKMDLYDEDDL--RKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLK  168 (301)
T ss_dssp             H-HHHHHHH----TTCEEEEEECCGGGCCHHHH--HHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHS
T ss_pred             H-HHHHHHH----CCCCEEEEEeHHHcCCchhH--HHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhc
Confidence            6 7776653    47999999999999655433  34556666666  8999999999999999997764

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=99.70  E-value=1.1e-17  Score=130.79  Aligned_cols=105  Identities=11%  Similarity=0.102  Sum_probs=69.9

Q ss_pred             EEEEEEEeCCChhhhccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCH
Q 028300           61 RLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSR  140 (211)
Q Consensus        61 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~  140 (211)
                      ++.+.||||||...   .....+..+|++++|+|....+.+..+.        .  .....|.++|+||+|+........
T Consensus       171 ~~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~--------~--~~~~~p~ivVlNK~Dl~~~~~~~~  237 (355)
T 3p32_A          171 GFDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIK--------K--GVLELADIVVVNKADGEHHKEARL  237 (355)
T ss_dssp             TCCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCC--------T--TSGGGCSEEEEECCCGGGHHHHHH
T ss_pred             CCCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHH--------H--hHhhcCCEEEEECCCCcChhHHHH
Confidence            36789999999432   2334458899999999987654332211        0  123469999999999854322211


Q ss_pred             --HHHHHHHHH-------cCCeEEEeeccCCCcHHHHHHHHHHHHHh
Q 028300          141 --EEGIALAKE-------HGSLFLECSAKTRENVEQCFEQLALKIME  178 (211)
Q Consensus       141 --~~~~~~~~~-------~~~~~~~~Sa~~~~gv~~l~~~i~~~~~~  178 (211)
                        .+.......       ++.+++.+||+++.|+++++++|.+.+..
T Consensus       238 ~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~  284 (355)
T 3p32_A          238 AARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV  284 (355)
T ss_dssp             HHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence              111111111       25789999999999999999999887755

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=99.68  E-value=1.1e-15  Score=118.69  Aligned_cols=145  Identities=17%  Similarity=0.190  Sum_probs=89.6

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhhCCC--CCCC-CccceeeEEEEEEECCE---------------EEEEEEEeCCChhhh
Q 028300           14 SFKILLIGDSGVGKSSLLVSFISSSV--DDLS-PTIGVDFKIKLLTVAGK---------------RLKLTIWDTAGQERF   75 (211)
Q Consensus        14 ~~~I~v~G~~~~GKssli~~l~~~~~--~~~~-~~~~~~~~~~~~~~~~~---------------~~~~~l~D~~g~~~~   75 (211)
                      .++|+++|.||+|||||+|+|.+..+  ..+. .|...+..  .+.+.+.               +..+.+||+||...+
T Consensus         2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g--~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~   79 (363)
T 1jal_A            2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTG--VVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAG   79 (363)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSS--EEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEE--EEecCCcccceeeeeecccceeeeEEEEEECCCCccc
Confidence            47899999999999999999998764  1111 12222221  1222221               257999999997654


Q ss_pred             c----cc---hhhhccCCcEEEEEEECCCh----------hhHHHHHHHHHHH---------------------------
Q 028300           76 R----TL---TSSYYRGAQGIILVYDVTRR----------ETFTNLSDVWAKE---------------------------  111 (211)
Q Consensus        76 ~----~~---~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~---------------------------  111 (211)
                      .    .+   ....++.+|++++|+|+++.          +.+.++.. +..+                           
T Consensus        80 a~~~~gl~~~fl~~ir~ad~il~VvD~~~~~~v~~v~~~~dp~~d~~~-i~~EL~~~d~~~~~k~~~~~~k~~k~g~~~~  158 (363)
T 1jal_A           80 ASKGEGLGNKFLANIRETDAIGHVVRCFENDDIVHVAGKIDPLDDIDT-INTELALADLDSCERAIQRLQKRAKGGDKEA  158 (363)
T ss_dssp             HHHHGGGTCCHHHHHHTCSEEEEEEECSCC---------CCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHTTTCHHH
T ss_pred             ccccchHHHHHHHHHHhcCeEEEEEecCCCCceeeecCCcChHHHHHH-HHHHHHhhhHHHHhhHHHHHHHHhhccchhH
Confidence            2    22   23357899999999999862          22333221 1111                           


Q ss_pred             -------------hh-------------------hhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeec
Q 028300          112 -------------VD-------------------LYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSA  159 (211)
Q Consensus       112 -------------~~-------------------~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa  159 (211)
                                   +.                   .+.....+|+++++|+.|..-........++.++...+++++++||
T Consensus       159 ~~~~~~l~~~~~~L~~~~~~~~~~~~~~e~~~l~~~~llt~KPvi~v~N~~e~~~~~n~~~~~v~~~~~~~~~~~i~~sA  238 (363)
T 1jal_A          159 KFELSVMEKILPVLENAGMIRSVGLDKEELQAIKSYNFLTLKPTMYIANVNEDGFENNPYLDRVREIAAKEGAVVVPVCA  238 (363)
T ss_dssp             HHHHHHHHHHHHHHHTTCCGGGSCCCHHHHHHHGGGCCSTTSCEEEEEECCTTCSSSCHHHHHHHHHHHHTTCEEEEECH
T ss_pred             HHHHHHHHHHHHHHhcCCCccccCCCHHHHHHHHHhhcccCCcEEEEEecccccccccHHHHHHHHHHHHcCCCEEEech
Confidence                         10                   0112335899999999996422223345566777778899999996


Q ss_pred             cC
Q 028300          160 KT  161 (211)
Q Consensus       160 ~~  161 (211)
                      +.
T Consensus       239 ~~  240 (363)
T 1jal_A          239 AI  240 (363)
T ss_dssp             HH
T ss_pred             HH
Confidence            53

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=99.68  E-value=4.8e-18  Score=132.79  Aligned_cols=158  Identities=23%  Similarity=0.168  Sum_probs=93.5

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhhCCCC-C----CCCccce----------------------eeE-------------
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFISSSVD-D----LSPTIGV----------------------DFK-------------   51 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~~~~~~-~----~~~~~~~----------------------~~~-------------   51 (211)
                      ....+|+|+|.+|||||||+|+|++..+. .    ....++.                      ++.             
T Consensus        29 ~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i  108 (353)
T 2x2e_A           29 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV  108 (353)
T ss_dssp             CCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHh
Confidence            34579999999999999999999988763 1    1111210                      000             


Q ss_pred             ----------EEEEEEC-CEEEEEEEEeCCChh-------------hhccchhhhccCCc-EEEEEEECCChhhHHHHHH
Q 028300           52 ----------IKLLTVA-GKRLKLTIWDTAGQE-------------RFRTLTSSYYRGAQ-GIILVYDVTRRETFTNLSD  106 (211)
Q Consensus        52 ----------~~~~~~~-~~~~~~~l~D~~g~~-------------~~~~~~~~~~~~~d-~~i~v~d~~~~~s~~~~~~  106 (211)
                                ...+.+. .....+.||||||..             .+..+...++...+ ++++|.|++....-.+...
T Consensus       109 ~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~  188 (353)
T 2x2e_A          109 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK  188 (353)
T ss_dssp             HTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHH
T ss_pred             cccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHH
Confidence                      0001110 113569999999953             33445556666565 5555666654322122211


Q ss_pred             HHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHH--HHHcC-CeEEEeeccCCCcHHHHHHHHHH
Q 028300          107 VWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIAL--AKEHG-SLFLECSAKTRENVEQCFEQLAL  174 (211)
Q Consensus       107 ~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~--~~~~~-~~~~~~Sa~~~~gv~~l~~~i~~  174 (211)
                       +...+    ...+.|+++|+||+|+.+............  ....+ .+++.+||+++.|++++++++.+
T Consensus       189 -i~~~~----~~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~  254 (353)
T 2x2e_A          189 -VAKEV----DPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA  254 (353)
T ss_dssp             -HHHHH----CTTCTTEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred             -HHHHh----CcCCCceEEEeccccccCcchhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence             33332    345889999999999965433111111100  00123 25788999999999999998876

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=99.66  E-value=7.5e-16  Score=126.30  Aligned_cols=118  Identities=14%  Similarity=0.153  Sum_probs=80.0

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhhCC---------------------CCCCCCccceeeEEEEEEECCEEEEEEEEeCC
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFISSS---------------------VDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTA   70 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~   70 (211)
                      .+.-+|+|+|+.++|||||..+|+...                     +.......|.+.......+...+..++|+|||
T Consensus        29 ~r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTP  108 (548)
T 3vqt_A           29 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTP  108 (548)
T ss_dssp             HTEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCC
T ss_pred             cccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCC
Confidence            345789999999999999999996211                     11111122333332233333355789999999


Q ss_pred             ChhhhccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCC
Q 028300           71 GQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSE  135 (211)
Q Consensus        71 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~  135 (211)
                      |+.+|..-....++-+|++|+|+|+.+.-....... |....     ..++|.++++||+|....
T Consensus       109 GHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v-~~~a~-----~~~lp~i~fINK~Dr~~a  167 (548)
T 3vqt_A          109 GHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKL-MDVCR-----MRATPVMTFVNKMDREAL  167 (548)
T ss_dssp             CGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHH-HHHHH-----HTTCCEEEEEECTTSCCC
T ss_pred             CcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHH-HHHHH-----HhCCceEEEEecccchhc
Confidence            999999989999999999999999987433222222 43332     348999999999997543

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=99.65  E-value=2.8e-18  Score=125.98  Aligned_cols=60  Identities=22%  Similarity=0.159  Sum_probs=46.6

Q ss_pred             CccEEEEeecCCCCCCcccCHHHHHHHHHHc--CCeEEEeeccCCCcHHHHHHHHHHHHHhc
Q 028300          120 DCVKMLVGNKVDRDSERVVSREEGIALAKEH--GSLFLECSAKTRENVEQCFEQLALKIMEV  179 (211)
Q Consensus       120 ~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~--~~~~~~~Sa~~~~gv~~l~~~i~~~~~~~  179 (211)
                      ..|.++|+||+|+.+...+..++...++..+  +++++++||+++.|++++|++|.+.+...
T Consensus       164 ~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~  225 (226)
T 2hf9_A          164 KTADLIVINKIDLADAVGADIKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVKEV  225 (226)
T ss_dssp             TTCSEEEEECGGGHHHHTCCHHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHHHC
T ss_pred             hcCCEEEEeccccCchhHHHHHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHHhh
Confidence            4677999999998644334556666666554  57899999999999999999998877543

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=99.65  E-value=7.3e-17  Score=118.02  Aligned_cols=155  Identities=16%  Similarity=0.148  Sum_probs=93.7

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhhCCCCCCC-----Cccce----------eeEEEEEEE----------------CCEE
Q 028300           13 LSFKILLIGDSGVGKSSLLVSFISSSVDDLS-----PTIGV----------DFKIKLLTV----------------AGKR   61 (211)
Q Consensus        13 ~~~~I~v~G~~~~GKssli~~l~~~~~~~~~-----~~~~~----------~~~~~~~~~----------------~~~~   61 (211)
                      ...+|+++|.+|||||||+++|.........     ...+.          ......+..                ....
T Consensus        29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (221)
T 2wsm_A           29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD  108 (221)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence            4578999999999999999999865321100     00000          000011110                0123


Q ss_pred             EEEEEEeCCChhhhccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHH
Q 028300           62 LKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSRE  141 (211)
Q Consensus        62 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~  141 (211)
                      ..+.+||++|......   .+....+.+++|+|+++....  ... +..   .    .+.|.++|+||+|+.+.......
T Consensus       109 ~d~iiidt~G~~~~~~---~~~~~~~~~i~vvd~~~~~~~--~~~-~~~---~----~~~~~iiv~NK~Dl~~~~~~~~~  175 (221)
T 2wsm_A          109 CDLLLIENVGNLICPV---DFDLGENYRVVMVSVTEGDDV--VEK-HPE---I----FRVADLIVINKVALAEAVGADVE  175 (221)
T ss_dssp             CSEEEEEEEEBSSGGG---GCCCSCSEEEEEEEGGGCTTH--HHH-CHH---H----HHTCSEEEEECGGGHHHHTCCHH
T ss_pred             CCEEEEeCCCCCCCCc---hhccccCcEEEEEeCCCcchh--hhh-hhh---h----hhcCCEEEEecccCCcchhhHHH
Confidence            4678899888411110   111256889999998865321  111 111   1    25788999999998543223455


Q ss_pred             HHHHHHHHc--CCeEEEeeccCCCcHHHHHHHHHHHHHhcc
Q 028300          142 EGIALAKEH--GSLFLECSAKTRENVEQCFEQLALKIMEVP  180 (211)
Q Consensus       142 ~~~~~~~~~--~~~~~~~Sa~~~~gv~~l~~~i~~~~~~~~  180 (211)
                      +........  .++++++||+++.|++++|++|.+.+....
T Consensus       176 ~~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~~~  216 (221)
T 2wsm_A          176 KMKADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNVHS  216 (221)
T ss_dssp             HHHHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC---
T ss_pred             HHHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHHH
Confidence            555555543  478999999999999999999998775543

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=99.63  E-value=9.1e-16  Score=125.92  Aligned_cols=123  Identities=20%  Similarity=0.243  Sum_probs=82.3

Q ss_pred             CCceeeEEEEEcCCCCcHHHHHHHHhhCCCC--CCCCccceeeEEEEEEECC------E----------------E----
Q 028300           10 SYDLSFKILLIGDSGVGKSSLLVSFISSSVD--DLSPTIGVDFKIKLLTVAG------K----------------R----   61 (211)
Q Consensus        10 ~~~~~~~I~v~G~~~~GKssli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~------~----------------~----   61 (211)
                      .....++|+|+|.+|+|||||+|+|++..+.  ...+.+.++.......-+.      .                +    
T Consensus        61 ~~~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~  140 (550)
T 2qpt_A           61 DFDGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFL  140 (550)
T ss_dssp             TTSSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCC
T ss_pred             cccCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhccccc
Confidence            3456789999999999999999999998763  2222222222110000000      0                0    


Q ss_pred             -------------EEEEEEeCCChhh-----------hccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhcc
Q 028300           62 -------------LKLTIWDTAGQER-----------FRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYST  117 (211)
Q Consensus        62 -------------~~~~l~D~~g~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~  117 (211)
                                   ..+.||||||...           +...+..++..+|++|+|+|+++......... |...+..   
T Consensus       141 ~~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~-~l~~l~~---  216 (550)
T 2qpt_A          141 NRFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSE-AIGALRG---  216 (550)
T ss_dssp             TTEEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHH-HHHHTTT---
T ss_pred             ccceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHH-HHHHHHh---
Confidence                         2589999999764           44556677889999999999987544444444 5555442   


Q ss_pred             CCCccEEEEeecCCCCCCcc
Q 028300          118 NQDCVKMLVGNKVDRDSERV  137 (211)
Q Consensus       118 ~~~~p~viv~nK~Dl~~~~~  137 (211)
                       .+.|+++|+||+|+....+
T Consensus       217 -~~~pvilVlNK~Dl~~~~e  235 (550)
T 2qpt_A          217 -HEDKIRVVLNKADMVETQQ  235 (550)
T ss_dssp             -CGGGEEEEEECGGGSCHHH
T ss_pred             -cCCCEEEEEECCCccCHHH
Confidence             3689999999999865433

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=99.62  E-value=2.7e-15  Score=112.50  Aligned_cols=174  Identities=19%  Similarity=0.065  Sum_probs=100.0

Q ss_pred             CCCCCCCCceeeEEEEEcCCCCcHHHHHHHHh-----hCCC--CCCCCc-cce------------eeEEE---EEE----
Q 028300            4 SSGQSNSYDLSFKILLIGDSGVGKSSLLVSFI-----SSSV--DDLSPT-IGV------------DFKIK---LLT----   56 (211)
Q Consensus         4 ~~~~~~~~~~~~~I~v~G~~~~GKssli~~l~-----~~~~--~~~~~~-~~~------------~~~~~---~~~----   56 (211)
                      +-+...-....+.+++.|.+||||||++++|.     +...  -...+. ...            +....   ...    
T Consensus         4 ~~~~~~~~~~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (262)
T 1yrb_A            4 SHHHHHHGMASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMREGYGPNGA   83 (262)
T ss_dssp             CCCCCCTTCCCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECCSSCSCCSSCCSEEGGGTCCHHHHHTTTCCHHHH
T ss_pred             ccccccCCcceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCCccccCCCCCCChhhcccHHHHhhccCCCCCc
Confidence            34455667788999999999999999999997     3331  000000 000            00000   000    


Q ss_pred             --------------------ECCEEEEEEEEeCCChhhhccchh------hhccCCcEEEEEEECCChhhHHHHHHHHHH
Q 028300           57 --------------------VAGKRLKLTIWDTAGQERFRTLTS------SYYRGAQGIILVYDVTRRETFTNLSDVWAK  110 (211)
Q Consensus        57 --------------------~~~~~~~~~l~D~~g~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~  110 (211)
                                          .-...+.+.||||||..+......      ..+.. +++++++|+....+.......+..
T Consensus        84 ~~~~~~~~~~~~~~l~~~l~~~~~~~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~  162 (262)
T 1yrb_A           84 IVESYDRLMEKFNEYLNKILRLEKENDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFF  162 (262)
T ss_dssp             HHHHHHHHHTTHHHHHHHHHHHHHHCSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHH
T ss_pred             EEecHHHHhhhHHHHHHHHHHHhhcCCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHH
Confidence                                000125789999999776533211      23456 889999987643332232221111


Q ss_pred             HhhhhccCCCccEEEEeecCCCCCCcccCH--------HHHH-H-----------------HHHHcC--CeEEEeeccCC
Q 028300          111 EVDLYSTNQDCVKMLVGNKVDRDSERVVSR--------EEGI-A-----------------LAKEHG--SLFLECSAKTR  162 (211)
Q Consensus       111 ~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~--------~~~~-~-----------------~~~~~~--~~~~~~Sa~~~  162 (211)
                      ... .....+.|+++|+||+|+.....+..        .... .                 ++..++  ++++++||+++
T Consensus       163 ~~~-~~~~~~~p~~iv~NK~D~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~  241 (262)
T 1yrb_A          163 ALL-IDLRLGATTIPALNKVDLLSEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTR  241 (262)
T ss_dssp             HHH-HHHHHTSCEEEEECCGGGCCHHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTC
T ss_pred             HHH-HhcccCCCeEEEEecccccccccHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCc
Confidence            111 11223689999999999865432110        0000 0                 023333  47999999999


Q ss_pred             CcHHHHHHHHHHHHHhc
Q 028300          163 ENVEQCFEQLALKIMEV  179 (211)
Q Consensus       163 ~gv~~l~~~i~~~~~~~  179 (211)
                      .|+++++++|.+.+...
T Consensus       242 ~gi~~l~~~i~~~~~~~  258 (262)
T 1yrb_A          242 EGFEDLETLAYEHYCTC  258 (262)
T ss_dssp             TTHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHhccc
Confidence            99999999998877544

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=99.61  E-value=2.4e-15  Score=117.39  Aligned_cols=154  Identities=16%  Similarity=0.134  Sum_probs=92.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhhCCC--CCCCC-ccceeeEEEEEEECC-------------------EEEEEEEEeCCCh
Q 028300           15 FKILLIGDSGVGKSSLLVSFISSSV--DDLSP-TIGVDFKIKLLTVAG-------------------KRLKLTIWDTAGQ   72 (211)
Q Consensus        15 ~~I~v~G~~~~GKssli~~l~~~~~--~~~~~-~~~~~~~~~~~~~~~-------------------~~~~~~l~D~~g~   72 (211)
                      ++|+++|.+|+|||||+++|.+...  ..+.. |...+....  .+.+                   ....+.+||+||.
T Consensus         2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~--~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl   79 (368)
T 2dby_A            2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVV--PLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGL   79 (368)
T ss_dssp             CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEE--ECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeE--ecChHHHHHHHHHhcccccccccCCceEEEEECCCc
Confidence            5799999999999999999997642  11111 111222111  2211                   2457999999997


Q ss_pred             hhhc----cc---hhhhccCCcEEEEEEECCCh----------hhHHHHHHHHHHHh-----------------------
Q 028300           73 ERFR----TL---TSSYYRGAQGIILVYDVTRR----------ETFTNLSDVWAKEV-----------------------  112 (211)
Q Consensus        73 ~~~~----~~---~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~-----------------------  112 (211)
                      ....    .+   ....++.+|++++|+|+++.          +.+.++.. +..++                       
T Consensus        80 ~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~~~~~~~v~~~~dp~~d~~~-i~~EL~~~d~~~l~k~~~~~~~~~~~~~  158 (368)
T 2dby_A           80 VKGAHKGEGLGNQFLAHIREVAAIAHVLRCFPDPDVVHVMGRVDPLEDAEV-VETELLLADLATLERRLERLRKEARADR  158 (368)
T ss_dssp             CCCCCSSSCTTHHHHHHHHTCSEEEEEEECCCCH-----------HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHCG
T ss_pred             cccccccchHHHHHHHHHHhCCEEEEEEECCCCCceeEeecccChHHHHHH-HhhHHHHccHHHHHHHHHHHHhhhccch
Confidence            6542    12   23357899999999999862          12222111 10000                       


Q ss_pred             ----------------h-------------------hhccCCCccEEEEeecCCCC--CC-cccCHHHHHHHHHHcCCeE
Q 028300          113 ----------------D-------------------LYSTNQDCVKMLVGNKVDRD--SE-RVVSREEGIALAKEHGSLF  154 (211)
Q Consensus       113 ----------------~-------------------~~~~~~~~p~viv~nK~Dl~--~~-~~v~~~~~~~~~~~~~~~~  154 (211)
                                      .                   .+.....+|+++++||.|..  +. ........+.++...++++
T Consensus       159 ~~~~~~~~l~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~lt~KPvi~v~N~~e~d~~~~~~n~~~~~v~~~a~~~g~~v  238 (368)
T 2dby_A          159 ERLPLLEAAEGLYVHLQEGKPARTFPPSEAVARFLKETPLLTAKPVIYVANVAEEDLPDGRGNPQVEAVRRKALEEGAEV  238 (368)
T ss_dssp             GGHHHHHHHHHHHHHHHTTCCGGGSCCCHHHHHHHHHSCCGGGSCEEEEEECCGGGTTTCTTCHHHHHHHHHHHHHTCEE
T ss_pred             hHHHHHHHHHHHHHHHhcCCCcccCCCCHHHHHHHHHHhhhhcCCeEEeccccHHhhcccchhhHHHHHHHHHHHcCCeE
Confidence                            0                   00012247999999999842  21 1234556677777788999


Q ss_pred             EEeeccCCCcHHHHHHH
Q 028300          155 LECSAKTRENVEQCFEQ  171 (211)
Q Consensus       155 ~~~Sa~~~~gv~~l~~~  171 (211)
                      +++||+...++.++.+.
T Consensus       239 v~iSAk~E~el~eL~~~  255 (368)
T 2dby_A          239 VVVSARLEAELAELSGE  255 (368)
T ss_dssp             EEECHHHHHHHHTSCHH
T ss_pred             EEeechhHHHHHHhchH
Confidence            99999885555544433

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=99.60  E-value=5.7e-15  Score=115.02  Aligned_cols=103  Identities=9%  Similarity=0.069  Sum_probs=62.6

Q ss_pred             EEEEEEEeCCChhhhccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCH
Q 028300           61 RLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSR  140 (211)
Q Consensus        61 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~  140 (211)
                      ++.+.|+||+|....   .......+|++++|+|+++.+....+..    .      ....|.++|+||+|+.+..... 
T Consensus       166 ~~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~~----~------il~~~~ivVlNK~Dl~~~~~~~-  231 (349)
T 2www_A          166 GYDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIKR----G------IIEMADLVAVTKSDGDLIVPAR-  231 (349)
T ss_dssp             TCSEEEEECCCC--C---HHHHHTTCSEEEEEECCC----------------------CCSCSEEEECCCSGGGHHHHH-
T ss_pred             CCCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhHH----H------HHhcCCEEEEeeecCCCchhHH-
Confidence            356789999995321   2344678999999999987543221111    0      1245789999999985321111 


Q ss_pred             HHHHHHHH----------HcCCeEEEeeccCCCcHHHHHHHHHHHHH
Q 028300          141 EEGIALAK----------EHGSLFLECSAKTRENVEQCFEQLALKIM  177 (211)
Q Consensus       141 ~~~~~~~~----------~~~~~~~~~Sa~~~~gv~~l~~~i~~~~~  177 (211)
                      .....+..          .+..+++.+||+++.|+++++++|.+.+.
T Consensus       232 ~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~  278 (349)
T 2www_A          232 RIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQD  278 (349)
T ss_dssp             HHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHH
Confidence            01111211          12457899999999999999999988764

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=99.60  E-value=3e-15  Score=128.41  Aligned_cols=116  Identities=20%  Similarity=0.220  Sum_probs=84.4

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhhCCC--C----------C-----C--CCccceeeEEEEEE------------ECCE
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFISSSV--D----------D-----L--SPTIGVDFKIKLLT------------VAGK   60 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~~~~~--~----------~-----~--~~~~~~~~~~~~~~------------~~~~   60 (211)
                      .+..+|+|+|++++|||||+++|+...-  .          .     .  ..|.........+.            .++.
T Consensus        17 ~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~   96 (842)
T 1n0u_A           17 TNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGN   96 (842)
T ss_dssp             GGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSS
T ss_pred             ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCC
Confidence            4568999999999999999999986421  0          0     0  01111112222222            1334


Q ss_pred             EEEEEEEeCCChhhhccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCC
Q 028300           61 RLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRD  133 (211)
Q Consensus        61 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~  133 (211)
                      .+.+.||||||+.+|...+...++.+|++|+|+|+++..++..... |....     ..++|+++++||+|+.
T Consensus        97 ~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~-~~~~~-----~~~~p~ilviNK~D~~  163 (842)
T 1n0u_A           97 SFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETV-LRQAL-----GERIKPVVVINKVDRA  163 (842)
T ss_dssp             EEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHH-HHHHH-----HTTCEEEEEEECHHHH
T ss_pred             CceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHH-HHHHH-----HcCCCeEEEEECCCcc
Confidence            7899999999999999889999999999999999999877766544 54332     2478999999999985

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=99.58  E-value=5.1e-16  Score=120.70  Aligned_cols=104  Identities=15%  Similarity=0.121  Sum_probs=65.7

Q ss_pred             EEEEEEEeCCChhhhccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCH
Q 028300           61 RLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSR  140 (211)
Q Consensus        61 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~  140 (211)
                      ++.+.||||||......   .....+|++++|+|++..+.+..        +..  ...+.|.++|+||+|+........
T Consensus       148 ~~~i~liDTpG~~~~~~---~~~~~aD~vl~Vvd~~~~~~~~~--------l~~--~~~~~p~ivv~NK~Dl~~~~~~~~  214 (341)
T 2p67_A          148 GYDVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDDLQG--------IKK--GLMEVADLIVINKDDGDNHTNVAI  214 (341)
T ss_dssp             TCSEEEEEEECCTTHHH---HHHTTCSEEEEEECC------CC--------CCH--HHHHHCSEEEECCCCTTCHHHHHH
T ss_pred             CCCEEEEeCCCccchHH---HHHHhCCEEEEEEeCCccHHHHH--------HHH--hhhcccCEEEEECCCCCChHHHHH
Confidence            35799999999654332   24588999999999976532211        110  012568899999999864322211


Q ss_pred             --HHHHHHHHHc-------CCeEEEeeccCCCcHHHHHHHHHHHHH
Q 028300          141 --EEGIALAKEH-------GSLFLECSAKTRENVEQCFEQLALKIM  177 (211)
Q Consensus       141 --~~~~~~~~~~-------~~~~~~~Sa~~~~gv~~l~~~i~~~~~  177 (211)
                        .+........       ..+++++||+++.|+++++++|.+.+.
T Consensus       215 ~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~  260 (341)
T 2p67_A          215 ARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT  260 (341)
T ss_dssp             HHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence              1122211221       357899999999999999999988765

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=99.56  E-value=4.6e-14  Score=110.18  Aligned_cols=155  Identities=14%  Similarity=0.069  Sum_probs=93.3

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhc-------cchhhhcc
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFR-------TLTSSYYR   84 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~-------~~~~~~~~   84 (211)
                      +-..+|+++|.||||||||+|+|.+... .....++++.......+...+..++|+|+||.-...       ......++
T Consensus        70 ~g~a~V~ivG~PNvGKSTL~n~Lt~~~~-~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~  148 (376)
T 4a9a_A           70 TGVASVGFVGFPSVGKSTLLSKLTGTES-EAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDGRGRGKQVIAVAR  148 (376)
T ss_dssp             CSSEEEEEECCCCHHHHHHHHHHHSBCC-CGGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC-----CHHHHHHHHHH
T ss_pred             cCCCeEEEECCCCCCHHHHHHHHhCCCC-cccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCCchhhhHHHHHHHHHHH
Confidence            3456999999999999999999998664 223334455444443333344678899999953211       11234568


Q ss_pred             CCcEEEEEEECCChhhHHHHHHHHHHHhhhh-ccCCCccEEEEeecCCCCC--------CcccCHHHHHHHHHHcCCeEE
Q 028300           85 GAQGIILVYDVTRRETFTNLSDVWAKEVDLY-STNQDCVKMLVGNKVDRDS--------ERVVSREEGIALAKEHGSLFL  155 (211)
Q Consensus        85 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~p~viv~nK~Dl~~--------~~~v~~~~~~~~~~~~~~~~~  155 (211)
                      .+|++++|+|++++..  .... +..++... ......|.++++||.|...        ......++.+.....+.+.--
T Consensus       149 ~ad~il~vvD~~~p~~--~~~~-i~~EL~~~~~~l~~k~~~i~~nK~d~~gi~i~~~~~~~~l~~eeik~il~~~~lt~k  225 (376)
T 4a9a_A          149 TCNLLFIILDVNKPLH--HKQI-IEKELEGVGIRLNKTPPDILIKKKEKGGISITNTVPLTHLGNDEIRAVMSEYRINSA  225 (376)
T ss_dssp             HCSEEEEEEETTSHHH--HHHH-HHHHHHHTTEEETCCCCCEEEEECSSSCEEEEESSCCSSCCHHHHHHHHHHTTCCSE
T ss_pred             hcCccccccccCccHH--HHHH-HHHHHHHhhHhhccCChhhhhhHhhhhhhhhhcchhhhhccHHHHHHHHHHhcccCC
Confidence            8999999999998743  2222 33333322 1234678899999999632        123445555555555544322


Q ss_pred             EeeccCCCcHHHHHH
Q 028300          156 ECSAKTRENVEQCFE  170 (211)
Q Consensus       156 ~~Sa~~~~gv~~l~~  170 (211)
                      ++--..+...+++.+
T Consensus       226 pv~~~~nv~eddl~d  240 (376)
T 4a9a_A          226 EIAFRCDATVDDLID  240 (376)
T ss_dssp             EEEECSCCCHHHHHH
T ss_pred             CeeecccCCHHHHHH
Confidence            222234445555443

>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}

Probab=99.53  E-value=1.3e-15  Score=127.10  Aligned_cols=114  Identities=17%  Similarity=0.226  Sum_probs=79.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhhCC--CCC---------CCC------ccceeeEEEEEEECCEEEEEEEEeCCChhhhcc
Q 028300           15 FKILLIGDSGVGKSSLLVSFISSS--VDD---------LSP------TIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRT   77 (211)
Q Consensus        15 ~~I~v~G~~~~GKssli~~l~~~~--~~~---------~~~------~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~   77 (211)
                      .||+|+|+.++|||||..+|+...  ...         +..      ..|.+.......+...+..++|+|||||.+|..
T Consensus         3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~~   82 (638)
T 3j25_A            3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFLA   82 (638)
T ss_dssp             CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHHH
Confidence            378999999999999999997311  110         000      113444444444555667899999999999998


Q ss_pred             chhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCC
Q 028300           78 LTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDS  134 (211)
Q Consensus        78 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~  134 (211)
                      .....++-+|++|+|+|+.+.-.... ...|.....     .++|.++++||+|...
T Consensus        83 Ev~raL~~~DgavlVVDa~~GV~~qT-~~v~~~a~~-----~~lp~i~~INKmDr~~  133 (638)
T 3j25_A           83 EVYRSLSVLDGAILLISAKDGVQAQT-RILFHALRK-----MGIPTIFFINKIDQNG  133 (638)
T ss_dssp             HHHHHHTTCSEEECCEESSCTTCSHH-HHHHHHHHH-----HTCSCEECCEECCSSS
T ss_pred             HHHHHHHHhCEEEEEEeCCCCCcHHH-HHHHHHHHH-----cCCCeEEEEecccccc
Confidence            89999999999999999987422222 222433322     3789999999999743

>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}

Probab=99.50  E-value=3.5e-13  Score=113.98  Aligned_cols=117  Identities=15%  Similarity=0.161  Sum_probs=78.5

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHhhCC--------CC---------CCCCccceeeEE--EEEEEC-----CEEEEEEE
Q 028300           11 YDLSFKILLIGDSGVGKSSLLVSFISSS--------VD---------DLSPTIGVDFKI--KLLTVA-----GKRLKLTI   66 (211)
Q Consensus        11 ~~~~~~I~v~G~~~~GKssli~~l~~~~--------~~---------~~~~~~~~~~~~--~~~~~~-----~~~~~~~l   66 (211)
                      .++--+|+|+|+.++|||||..+|+...        ..         ......|.+...  ..+.+.     ..++.++|
T Consensus        10 ~~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNl   89 (709)
T 4fn5_A           10 INRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNV   89 (709)
T ss_dssp             GGGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEE
T ss_pred             hHHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEE
Confidence            4566799999999999999999997211        10         011122333322  222332     23688999


Q ss_pred             EeCCChhhhccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCC
Q 028300           67 WDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRD  133 (211)
Q Consensus        67 ~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~  133 (211)
                      +|||||-+|.......++-+|++|+|+|+.+.-......- |.....     .++|.++++||+|..
T Consensus        90 IDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v-~~~a~~-----~~lp~i~~iNKiDr~  150 (709)
T 4fn5_A           90 IDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETV-WRQANK-----YGVPRIVYVNKMDRQ  150 (709)
T ss_dssp             ECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHH-HHHHHH-----HTCCEEEEEECSSST
T ss_pred             EeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHH-HHHHHH-----cCCCeEEEEcccccc
Confidence            9999999999889999999999999999887432222222 444332     389999999999974

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=99.49  E-value=1.7e-14  Score=121.22  Aligned_cols=158  Identities=21%  Similarity=0.130  Sum_probs=96.6

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccce-------------------------------------------
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGV-------------------------------------------   48 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~-------------------------------------------   48 (211)
                      ....+|+|+|.+++|||||+|+|++..+-.......+                                           
T Consensus        49 i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~  128 (772)
T 3zvr_A           49 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV  128 (772)
T ss_dssp             GCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhh
Confidence            4566999999999999999999998776111110000                                           


Q ss_pred             -------eeE--EEEEEECCEEEEEEEEeCCChhh-------------hccchhhhc-cCCcEEEEEEECCChhhHHHHH
Q 028300           49 -------DFK--IKLLTVAGKRLKLTIWDTAGQER-------------FRTLTSSYY-RGAQGIILVYDVTRRETFTNLS  105 (211)
Q Consensus        49 -------~~~--~~~~~~~~~~~~~~l~D~~g~~~-------------~~~~~~~~~-~~~d~~i~v~d~~~~~s~~~~~  105 (211)
                             ...  ...+...+ ...+.|+||||...             +..+...++ ..+|++++|+|++......+..
T Consensus       129 ~g~~~~is~~~i~l~I~~P~-~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l  207 (772)
T 3zvr_A          129 TGTNKGISPVPINLRVYSPH-VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL  207 (772)
T ss_dssp             HCSTTCCCSCCEEEEEEETT-CCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHH
T ss_pred             cCCCCcccccceEEEEecCC-CCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHH
Confidence                   000  01111111 12578999999432             222333333 5789999999998753333322


Q ss_pred             HHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHH--HcC-CeEEEeeccCCCcHHHHHHHHHHH
Q 028300          106 DVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAK--EHG-SLFLECSAKTRENVEQCFEQLALK  175 (211)
Q Consensus       106 ~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~--~~~-~~~~~~Sa~~~~gv~~l~~~i~~~  175 (211)
                      . +...+.    ..+.|+++|+||+|+.+..............  ..+ .+++.+||+++.|++++++.+.+.
T Consensus       208 ~-ll~~L~----~~g~pvIlVlNKiDlv~~~~~~~~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e  275 (772)
T 3zvr_A          208 K-IAKEVD----PQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE  275 (772)
T ss_dssp             H-HHHHHC----TTCSSEEEEEECTTSSCTTCCSHHHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHH
T ss_pred             H-HHHHHH----hcCCCEEEEEeCcccCCcchhhHHHHHHHhhhhhccCCceEEecccccccchhHHHHHHHH
Confidence            2 333333    4478999999999997654433221110000  012 357889999999999999998873

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=99.45  E-value=2.9e-13  Score=103.43  Aligned_cols=96  Identities=23%  Similarity=0.213  Sum_probs=76.0

Q ss_pred             hhhhccchhhhccCCcEEEEEEECCChh-hHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccC-HHHHHHHHHH
Q 028300           72 QERFRTLTSSYYRGAQGIILVYDVTRRE-TFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVS-REEGIALAKE  149 (211)
Q Consensus        72 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~-~~~~~~~~~~  149 (211)
                      ++++..+.+.+++++|++++|+|+++++ ++..+.. |+..+..    .++|+++|+||+|+.+...+. .++...++..
T Consensus        66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~-~l~~~~~----~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~  140 (302)
T 2yv5_A           66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDN-MLVVYEY----FKVEPVIVFNKIDLLNEEEKKELERWISIYRD  140 (302)
T ss_dssp             CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHH-HHHHHHH----TTCEEEEEECCGGGCCHHHHHHHHHHHHHHHH
T ss_pred             CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHH-HHHHHHh----CCCCEEEEEEcccCCCccccHHHHHHHHHHHH
Confidence            5667777888999999999999999986 7776665 7665543    589999999999996544322 3445566667


Q ss_pred             cCCeEEEeeccCCCcHHHHHHHH
Q 028300          150 HGSLFLECSAKTRENVEQCFEQL  172 (211)
Q Consensus       150 ~~~~~~~~Sa~~~~gv~~l~~~i  172 (211)
                      .+.+++++||+++.|++++++.+
T Consensus       141 ~g~~~~~~SA~~g~gi~~L~~~l  163 (302)
T 2yv5_A          141 AGYDVLKVSAKTGEGIDELVDYL  163 (302)
T ss_dssp             TTCEEEECCTTTCTTHHHHHHHT
T ss_pred             CCCeEEEEECCCCCCHHHHHhhc
Confidence            78999999999999999998664

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=99.43  E-value=6.1e-14  Score=108.67  Aligned_cols=104  Identities=7%  Similarity=0.077  Sum_probs=63.2

Q ss_pred             EEEEEEEeCCChhhhccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCH
Q 028300           61 RLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSR  140 (211)
Q Consensus        61 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~  140 (211)
                      ++.+.|+||+|.....   ......+|.+++++|....+....+..    .+      ...|.++++||+|+........
T Consensus       147 ~~~~iliDT~Gi~~~~---~~v~~~~d~vl~v~d~~~~~~~~~i~~----~i------~~~~~ivvlNK~Dl~~~~~~s~  213 (337)
T 2qm8_A          147 GFDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGIKK----GI------FELADMIAVNKADDGDGERRAS  213 (337)
T ss_dssp             TCCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------CCT----TH------HHHCSEEEEECCSTTCCHHHHH
T ss_pred             CCCEEEEECCCCCcch---hhHHhhCCEEEEEEcCCCcccHHHHHH----HH------hccccEEEEEchhccCchhHHH
Confidence            4578999999964321   234578999999999875432211110    00      1245678889999744322211


Q ss_pred             HHHHHHHHH----------cCCeEEEeeccCCCcHHHHHHHHHHHHH
Q 028300          141 EEGIALAKE----------HGSLFLECSAKTRENVEQCFEQLALKIM  177 (211)
Q Consensus       141 ~~~~~~~~~----------~~~~~~~~Sa~~~~gv~~l~~~i~~~~~  177 (211)
                      .....+...          +..+++.+|++++.|++++++.|.+.+.
T Consensus       214 ~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~  260 (337)
T 2qm8_A          214 AAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS  260 (337)
T ss_dssp             HHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            112222221          1356899999999999999999988654

>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}

Probab=99.39  E-value=4.5e-13  Score=95.23  Aligned_cols=109  Identities=9%  Similarity=-0.027  Sum_probs=71.3

Q ss_pred             CCChhhhccchhhhccCCcEEEEEEECCChhhHHHHHHHH---HHHhhhhccCCCccEEEEeecC-CCCCCcccCHHHHH
Q 028300           69 TAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVW---AKEVDLYSTNQDCVKMLVGNKV-DRDSERVVSREEGI  144 (211)
Q Consensus        69 ~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~---~~~~~~~~~~~~~p~viv~nK~-Dl~~~~~v~~~~~~  144 (211)
                      .+|+..++.+|+.++.+.|++|||+|.+|.+.++ ....+   ..++.......+.|++|++||. |+..  .....++.
T Consensus       109 ~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~--Ams~~EI~  185 (227)
T 3l82_B          109 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVK--RMPCFYLA  185 (227)
T ss_dssp             --------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSC--BCCHHHHH
T ss_pred             cCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccC--CCCHHHHH
Confidence            3478889999999999999999999999876544 33323   3334332123689999999995 6643  34444443


Q ss_pred             HHHH----HcCCeEEEeeccCCCcHHHHHHHHHHHHHhcc
Q 028300          145 ALAK----EHGSLFLECSAKTRENVEQCFEQLALKIMEVP  180 (211)
Q Consensus       145 ~~~~----~~~~~~~~~Sa~~~~gv~~l~~~i~~~~~~~~  180 (211)
                      +...    ...+.+..|||.+|+|+.+-++||.+.+...+
T Consensus       186 e~L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~~k~  225 (227)
T 3l82_B          186 HELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVESKR  225 (227)
T ss_dssp             HHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTTTC-
T ss_pred             HHcCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHHhhc
Confidence            3221    13466999999999999999999987765443

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=99.34  E-value=2e-11  Score=95.88  Aligned_cols=88  Identities=20%  Similarity=0.201  Sum_probs=57.3

Q ss_pred             CCceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccc--eeeEEEEEEECCE---------------EEEEEEEeCCCh
Q 028300           10 SYDLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIG--VDFKIKLLTVAGK---------------RLKLTIWDTAGQ   72 (211)
Q Consensus        10 ~~~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~---------------~~~~~l~D~~g~   72 (211)
                      ......+|+++|++|||||||+|.|.+.........++  .....-.+.+.+.               ...+.+||+||.
T Consensus        16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl   95 (392)
T 1ni3_A           16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL   95 (392)
T ss_dssp             SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred             cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence            34556799999999999999999999866422222222  1112222333321               136899999995


Q ss_pred             hh-------hccchhhhccCCcEEEEEEECCC
Q 028300           73 ER-------FRTLTSSYYRGAQGIILVYDVTR   97 (211)
Q Consensus        73 ~~-------~~~~~~~~~~~~d~~i~v~d~~~   97 (211)
                      ..       ........++.+|++++|+|+.+
T Consensus        96 ~~~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~  127 (392)
T 1ni3_A           96 TKGASTGVGLGNAFLSHVRAVDAIYQVVRAFD  127 (392)
T ss_dssp             CCCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             ccCCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            32       22234456688999999999864

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=99.31  E-value=1.7e-12  Score=101.77  Aligned_cols=91  Identities=21%  Similarity=0.223  Sum_probs=51.6

Q ss_pred             CCceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCE---------------EEEEEEEeCCChh
Q 028300           10 SYDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGK---------------RLKLTIWDTAGQE   73 (211)
Q Consensus        10 ~~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~D~~g~~   73 (211)
                      ......+|+++|.+|+|||||+|+|.+..+ ....|..........+.+.+.               ...+.+||+||..
T Consensus        18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~   97 (396)
T 2ohf_A           18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLV   97 (396)
T ss_dssp             CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC--
T ss_pred             hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcc
Confidence            445678999999999999999999998765 111121111111222233221               2359999999976


Q ss_pred             hhcc-------chhhhccCCcEEEEEEECCChhh
Q 028300           74 RFRT-------LTSSYYRGAQGIILVYDVTRRET  100 (211)
Q Consensus        74 ~~~~-------~~~~~~~~~d~~i~v~d~~~~~s  100 (211)
                      ....       .+...++.+|++++|+|+++.++
T Consensus        98 ~~as~~~glg~~~l~~ir~aD~Il~VvD~~~~~~  131 (396)
T 2ohf_A           98 KGAHNGQGLGNAFLSHISACDGIFHLTRAFEDDD  131 (396)
T ss_dssp             ---------CCHHHHHHHTSSSEEEEEEC-----
T ss_pred             cccchhhHHHHHHHHHHHhcCeEEEEEecCCCcc
Confidence            5432       35567889999999999886443

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=99.23  E-value=1.7e-11  Score=91.30  Aligned_cols=109  Identities=9%  Similarity=-0.021  Sum_probs=75.4

Q ss_pred             CCChhhhccchhhhccCCcEEEEEEECCChhhHHHHHHHH---HHHhhhhccCCCccEEEEeec-CCCCCCcccCHHHHH
Q 028300           69 TAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVW---AKEVDLYSTNQDCVKMLVGNK-VDRDSERVVSREEGI  144 (211)
Q Consensus        69 ~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~---~~~~~~~~~~~~~p~viv~nK-~Dl~~~~~v~~~~~~  144 (211)
                      .+|+...+.+|+.++.+.|++|||+|.+|.+.++ ....+   ..++.......+.|++|++|| .|+...  ....++.
T Consensus       194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~A--ms~~EI~  270 (312)
T 3l2o_B          194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKR--MPCFYLA  270 (312)
T ss_dssp             ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCB--CCHHHHH
T ss_pred             CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCC--CCHHHHH
Confidence            4578888999999999999999999999987544 22212   234433212468999999997 577433  4444443


Q ss_pred             HHHH----HcCCeEEEeeccCCCcHHHHHHHHHHHHHhcc
Q 028300          145 ALAK----EHGSLFLECSAKTRENVEQCFEQLALKIMEVP  180 (211)
Q Consensus       145 ~~~~----~~~~~~~~~Sa~~~~gv~~l~~~i~~~~~~~~  180 (211)
                      +...    ...+.+..|||.+|+|+.+-++||.+.+...+
T Consensus       271 e~L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~~k~  310 (312)
T 3l2o_B          271 HELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVESKR  310 (312)
T ss_dssp             HHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSCC--
T ss_pred             HHcCCccCCCcEEEEecccCCCcCHHHHHHHHHHHHHhhc
Confidence            3221    13456999999999999999999998875543

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=99.04  E-value=3.4e-11  Score=94.39  Aligned_cols=142  Identities=15%  Similarity=0.123  Sum_probs=85.7

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhhC-----CCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhcc--------chh
Q 028300           14 SFKILLIGDSGVGKSSLLVSFISS-----SVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRT--------LTS   80 (211)
Q Consensus        14 ~~~I~v~G~~~~GKssli~~l~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~--------~~~   80 (211)
                      ..+|+++|.+|+|||||+|+|++.     ........++++.....+.+...   +.++||||......        ...
T Consensus       162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l~  238 (369)
T 3ec1_A          162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLESG---ATLYDTPGIINHHQMAHFVDARDLK  238 (369)
T ss_dssp             TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEECSTT---CEEEECCSCCCCSSGGGGSCTTTHH
T ss_pred             cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEEeCCC---eEEEeCCCcCcHHHHHHHHhHHHHH
Confidence            357999999999999999999976     22333445566666666655432   78999999532211        112


Q ss_pred             hhc--cCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEee
Q 028300           81 SYY--RGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECS  158 (211)
Q Consensus        81 ~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~S  158 (211)
                      .++  ...|.++++++......+..+.  .   +.. ....+.|+++++||.|......... ....+.+..+..+...+
T Consensus       239 ~~~~~~~i~~~~~~l~~~~~~~~g~l~--~---l~~-l~~~~~~~~~v~~k~d~~~~~~~~~-~~~~~~~~~g~~l~p~~  311 (369)
T 3ec1_A          239 IITPKREIHPRVYQLNEGQTLFFGGLA--R---LDY-IKGGRRSFVCYMANELTVHRTKLEK-ADSLYANQLGELLSPPS  311 (369)
T ss_dssp             HHSCSSCCCCEEEEECTTEEEEETTTE--E---EEE-EESSSEEEEEEECTTSCEEEEEGGG-HHHHHHHHBTTTBCSSC
T ss_pred             HHhcccccCceEEEEcCCceEEECCEE--E---EEE-ccCCCceEEEEecCCcccccccHHH-HHHHHHHhcCCccCCCC
Confidence            222  5679999999985321111111  0   111 1345789999999999865443322 22334445666665555


Q ss_pred             ccCCCcH
Q 028300          159 AKTRENV  165 (211)
Q Consensus       159 a~~~~gv  165 (211)
                      +.+..++
T Consensus       312 ~~~~~~~  318 (369)
T 3ec1_A          312 KRYAAEF  318 (369)
T ss_dssp             GGGTTTC
T ss_pred             chhhhhc
Confidence            5544443

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=98.99  E-value=6.4e-10  Score=88.04  Aligned_cols=139  Identities=20%  Similarity=0.282  Sum_probs=70.5

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhhCCCCC---CCCccceeeEEEEEEECCE--EEEEEEEeCCChhhh-------------
Q 028300           14 SFKILLIGDSGVGKSSLLVSFISSSVDD---LSPTIGVDFKIKLLTVAGK--RLKLTIWDTAGQERF-------------   75 (211)
Q Consensus        14 ~~~I~v~G~~~~GKssli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~--~~~~~l~D~~g~~~~-------------   75 (211)
                      .++++|+|++|+|||||++.|++..+..   .....+.......+.....  ...++++|++|....             
T Consensus        42 i~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~  121 (427)
T 2qag_B           42 CFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEF  121 (427)
T ss_dssp             EEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHH
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHH
Confidence            3569999999999999999999875421   1112233333333333222  236889999874211             


Q ss_pred             -----ccchhhh---------ccCC--cE-EEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCccc
Q 028300           76 -----RTLTSSY---------YRGA--QG-IILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVV  138 (211)
Q Consensus        76 -----~~~~~~~---------~~~~--d~-~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v  138 (211)
                           .......         +..+  |+ ++++.|....-+..++  .++..+.     .++|+++|.||+|.....++
T Consensus       122 i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Di--eilk~L~-----~~~~vI~Vi~KtD~Lt~~E~  194 (427)
T 2qag_B          122 IDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDL--VTMKKLD-----SKVNIIPIIAKADAISKSEL  194 (427)
T ss_dssp             HHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHH--HHHHHTC-----SCSEEEEEESCGGGSCHHHH
T ss_pred             HHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHH--HHHHHHh-----hCCCEEEEEcchhccchHHH
Confidence                 0111111         1122  33 5556665543222222  1333332     58899999999998654432


Q ss_pred             CH--HHHHHHHHHcCCeEEEeec
Q 028300          139 SR--EEGIALAKEHGSLFLECSA  159 (211)
Q Consensus       139 ~~--~~~~~~~~~~~~~~~~~Sa  159 (211)
                      ..  ..+.......+++++.+|.
T Consensus       195 ~~l~~~I~~~L~~~gi~I~~is~  217 (427)
T 2qag_B          195 TKFKIKITSELVSNGVQIYQFPT  217 (427)
T ss_dssp             HHHHHHHHHHHBTTBCCCCCCC-
T ss_pred             HHHHHHHHHHHHHcCCcEEecCC
Confidence            21  1112212235666666664

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=98.99  E-value=3.6e-09  Score=83.72  Aligned_cols=159  Identities=16%  Similarity=0.182  Sum_probs=88.1

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhhCCCCC--CCCcccee--eEEEEEEECCEEEEEEEEeCCChhhhccch-----hhhcc
Q 028300           14 SFKILLIGDSGVGKSSLLVSFISSSVDD--LSPTIGVD--FKIKLLTVAGKRLKLTIWDTAGQERFRTLT-----SSYYR   84 (211)
Q Consensus        14 ~~~I~v~G~~~~GKssli~~l~~~~~~~--~~~~~~~~--~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~-----~~~~~   84 (211)
                      ...|+++|++|+|||||+|.+.+.....  .....+..  .....+. ......+.+||++|........     ...+.
T Consensus        69 ~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q-~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~  147 (413)
T 1tq4_A           69 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYK-HPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFY  147 (413)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEE-CSSCTTEEEEECCCGGGSSCCHHHHHHHTTGG
T ss_pred             CeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEecc-ccccCCeeehHhhcccchHHHHHHHHHHcCCC
Confidence            3489999999999999999999743211  11111111  1111111 1111257899999853211111     12234


Q ss_pred             CCcEEEEEEECC--ChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCC-------CCcccCHHHH----HHHH----
Q 028300           85 GAQGIILVYDVT--RRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRD-------SERVVSREEG----IALA----  147 (211)
Q Consensus        85 ~~d~~i~v~d~~--~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~-------~~~~v~~~~~----~~~~----  147 (211)
                      ..+..++ ++..  ..+...     +...+.    ..+.|+++|.||.|+.       .-+.....+.    ..+.    
T Consensus       148 ~~~~~~~-lS~G~~~kqrv~-----la~aL~----~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l  217 (413)
T 1tq4_A          148 EYDFFII-ISATRFKKNDID-----IAKAIS----MMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTF  217 (413)
T ss_dssp             GCSEEEE-EESSCCCHHHHH-----HHHHHH----HTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHH
T ss_pred             ccCCeEE-eCCCCccHHHHH-----HHHHHH----hcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHH
Confidence            4455555 7776  322111     222222    2378999999999962       1112222222    2222    


Q ss_pred             HHcC---CeEEEeec--cCCCcHHHHHHHHHHHHHhccchh
Q 028300          148 KEHG---SLFLECSA--KTRENVEQCFEQLALKIMEVPSLL  183 (211)
Q Consensus       148 ~~~~---~~~~~~Sa--~~~~gv~~l~~~i~~~~~~~~~~~  183 (211)
                      ...+   ..++.+|+  ..+.|++++.+.+.+.+.+.++..
T Consensus       218 ~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg~~~~  258 (413)
T 1tq4_A          218 RENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIYKRHN  258 (413)
T ss_dssp             HHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGGGHHH
T ss_pred             HhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCccchhhH
Confidence            1222   25788999  556679999999998887776544

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=98.99  E-value=1.3e-09  Score=85.45  Aligned_cols=97  Identities=15%  Similarity=0.191  Sum_probs=72.4

Q ss_pred             ChhhhccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHH----HHH
Q 028300           71 GQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEG----IAL  146 (211)
Q Consensus        71 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~----~~~  146 (211)
                      ..++|..++..+.+.+|++++|+|++++.      ..|...+..+  ..++|+++|+||+|+.+.. ...+..    ..+
T Consensus        55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~------~~~~~~l~~~--~~~~p~ilV~NK~DL~~~~-~~~~~~~~~l~~~  125 (368)
T 3h2y_A           55 TDDDFLRILNGIGKSDALVVKIVDIFDFN------GSWLPGLHRF--VGNNKVLLVGNKADLIPKS-VKHDKVKHWMRYS  125 (368)
T ss_dssp             -CHHHHHHHHHHHHSCCEEEEEEETTSHH------HHCCTTHHHH--SSSSCEEEEEECGGGSCTT-SCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHhccCcEEEEEEECCCCc------ccHHHHHHHH--hCCCcEEEEEEChhcCCcc-cCHHHHHHHHHHH
Confidence            45778888889999999999999999863      2255555554  2478999999999996543 222222    233


Q ss_pred             HHHcCC---eEEEeeccCCCcHHHHHHHHHHHH
Q 028300          147 AKEHGS---LFLECSAKTRENVEQCFEQLALKI  176 (211)
Q Consensus       147 ~~~~~~---~~~~~Sa~~~~gv~~l~~~i~~~~  176 (211)
                      +...+.   +++.+||+++.|++++++.|.+..
T Consensus       126 ~~~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~~  158 (368)
T 3h2y_A          126 AKQLGLKPEDVFLISAAKGQGIAELADAIEYYR  158 (368)
T ss_dssp             HHHTTCCCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             HHHcCCCcccEEEEeCCCCcCHHHHHhhhhhhc
Confidence            556676   799999999999999999987654

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=98.94  E-value=1.3e-09  Score=88.33  Aligned_cols=151  Identities=15%  Similarity=0.141  Sum_probs=84.5

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHh------hCCC-----CCCCCcc-----------ceeeEEEEEE-------------
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFI------SSSV-----DDLSPTI-----------GVDFKIKLLT-------------   56 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~------~~~~-----~~~~~~~-----------~~~~~~~~~~-------------   56 (211)
                      .....|+|+|.+||||||++++|.      +...     +.+.+..           +..+......             
T Consensus        99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~  178 (504)
T 2j37_W           99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK  178 (504)
T ss_dssp             S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence            456789999999999999999998      3331     1111100           0111110000             


Q ss_pred             ECCEEEEEEEEeCCChhhhc-cchhh---h--ccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccE-EEEeec
Q 028300           57 VAGKRLKLTIWDTAGQERFR-TLTSS---Y--YRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVK-MLVGNK  129 (211)
Q Consensus        57 ~~~~~~~~~l~D~~g~~~~~-~~~~~---~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~-viv~nK  129 (211)
                      .....+.+.|+||||..... .+...   .  +..+|.+++|+|+.........    ...+..     .+|+ .+|+||
T Consensus       179 ~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~~~----a~~~~~-----~~~i~gvVlNK  249 (504)
T 2j37_W          179 FKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQ----AKAFKD-----KVDVASVIVTK  249 (504)
T ss_dssp             HHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHHHH----HHHHHH-----HHCCCCEEEEC
T ss_pred             HHHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHHHH----HHHHHh-----hcCceEEEEeC
Confidence            00023578999999964321 11111   1  2278999999999875432111    112211     2564 899999


Q ss_pred             CCCCCCcccCHHHHHHHHHHcCCeE------------------EEeeccCCCc-HHHHHHHHHHH
Q 028300          130 VDRDSERVVSREEGIALAKEHGSLF------------------LECSAKTREN-VEQCFEQLALK  175 (211)
Q Consensus       130 ~Dl~~~~~v~~~~~~~~~~~~~~~~------------------~~~Sa~~~~g-v~~l~~~i~~~  175 (211)
                      .|.......    ........+.|+                  +.+|+..|.| +.++++++.+.
T Consensus       250 ~D~~~~~g~----~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~  310 (504)
T 2j37_W          250 LDGHAKGGG----ALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL  310 (504)
T ss_dssp             TTSCCCCTH----HHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred             CccccchHH----HHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence            998633221    122233445443                  3368888988 98888888765

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=98.92  E-value=3.9e-11  Score=93.97  Aligned_cols=134  Identities=13%  Similarity=0.147  Sum_probs=77.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhhCCC------CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhcc----ch----h
Q 028300           15 FKILLIGDSGVGKSSLLVSFISSSV------DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRT----LT----S   80 (211)
Q Consensus        15 ~~I~v~G~~~~GKssli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~----~~----~   80 (211)
                      .+|+++|.+|+|||||+|+|++...      ......++++.....+.+...   +.++||||......    +.    .
T Consensus       161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l~  237 (368)
T 3h2y_A          161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEE---SSLYDTPGIINHHQMAHYVGKQSLK  237 (368)
T ss_dssp             SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSSS---CEEEECCCBCCTTSGGGGSCHHHHH
T ss_pred             ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecCC---eEEEeCCCcCcHHHHHHHhhHHHHH
Confidence            5799999999999999999997632      223455566666656555443   78999999533221    11    1


Q ss_pred             hh--ccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEee
Q 028300           81 SY--YRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECS  158 (211)
Q Consensus        81 ~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~S  158 (211)
                      .+  ....+..+++++......+..+.  .   +. .....+.|+++++||+|........ .....+.+..+..++..+
T Consensus       238 ~~~~~~~i~~~~~~l~~~~~~~~g~l~--~---~d-~l~~~~~~~~~v~nk~d~~~~~~~~-~~~~~~~~~~g~~l~p~~  310 (368)
T 3h2y_A          238 LITPTKEIKPMVFQLNEEQTLFFSGLA--R---FD-YVSGGRRAFTCHFSNRLTIHRTKLE-KADELYKNHAGDLLSPPT  310 (368)
T ss_dssp             HHSCSSCCCCEEEEECTTEEEEETTTE--E---EE-EEESSSEEEEEEECTTSCEEEEEHH-HHHHHHHHHBTTTBCSSC
T ss_pred             HhccccccCceEEEEcCCCEEEEcceE--E---EE-EecCCCceEEEEecCccccccccHH-HHHHHHHHHhCCccCCCc
Confidence            11  35668888998874321111111  1   11 1134578999999999986544322 222333444555444444

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.86  E-value=4.4e-09  Score=79.43  Aligned_cols=101  Identities=14%  Similarity=0.101  Sum_probs=70.3

Q ss_pred             EEeCCChh-hhccchhhhccCCcEEEEEEECCChhhHHH--HHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHH
Q 028300           66 IWDTAGQE-RFRTLTSSYYRGAQGIILVYDVTRRETFTN--LSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREE  142 (211)
Q Consensus        66 l~D~~g~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~  142 (211)
                      +-..|||. .........+.++|++++|+|+.++.+..+  +.. |   +      .++|.++|+||+|+.+...  .+.
T Consensus         3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~-~---l------~~kp~ilVlNK~DL~~~~~--~~~   70 (282)
T 1puj_A            3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIED-I---L------KNKPRIMLLNKADKADAAV--TQQ   70 (282)
T ss_dssp             ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHH-H---C------SSSCEEEEEECGGGSCHHH--HHH
T ss_pred             CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHH-H---H------CCCCEEEEEECcccCCHHH--HHH
Confidence            34578876 334456677899999999999999877542  222 2   1      4789999999999965321  223


Q ss_pred             HHHHHHHcCCeEEEeeccCCCcHHHHHHHHHHHHHh
Q 028300          143 GIALAKEHGSLFLECSAKTRENVEQCFEQLALKIME  178 (211)
Q Consensus       143 ~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~~~~  178 (211)
                      ...+....+.+++.+||.++.|++++++.+.+.+.+
T Consensus        71 ~~~~~~~~g~~~i~iSA~~~~gi~~L~~~i~~~l~~  106 (282)
T 1puj_A           71 WKEHFENQGIRSLSINSVNGQGLNQIVPASKEILQE  106 (282)
T ss_dssp             HHHHHHTTTCCEEECCTTTCTTGGGHHHHHHHHHHH
T ss_pred             HHHHHHhcCCcEEEEECCCcccHHHHHHHHHHHHHH
Confidence            344555567899999999999999999988877654

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=98.84  E-value=3.3e-09  Score=83.11  Aligned_cols=97  Identities=16%  Similarity=0.142  Sum_probs=70.9

Q ss_pred             ChhhhccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHH----HHH
Q 028300           71 GQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEG----IAL  146 (211)
Q Consensus        71 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~----~~~  146 (211)
                      .++.|..+...+.+.++++++|+|++++++     . |...+..+  ..+.|+++|+||+|+.+.. ...+..    ..+
T Consensus        57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s-~~~~l~~~--l~~~piilV~NK~DLl~~~-~~~~~~~~~l~~~  127 (369)
T 3ec1_A           57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG-----S-FIPGLPRF--AADNPILLVGNKADLLPRS-VKYPKLLRWMRRM  127 (369)
T ss_dssp             --CHHHHHHHHHHHHCCEEEEEEETTCSGG-----G-CCSSHHHH--CTTSCEEEEEECGGGSCTT-CCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHhhccCcEEEEEEECCCCCC-----c-hhhHHHHH--hCCCCEEEEEEChhcCCCc-cCHHHHHHHHHHH
Confidence            467888888888899999999999999763     1 44444433  2378999999999996543 222222    233


Q ss_pred             HHHcCC---eEEEeeccCCCcHHHHHHHHHHHH
Q 028300          147 AKEHGS---LFLECSAKTRENVEQCFEQLALKI  176 (211)
Q Consensus       147 ~~~~~~---~~~~~Sa~~~~gv~~l~~~i~~~~  176 (211)
                      +...+.   .++.+||+++.|++++++.+.+..
T Consensus       128 ~~~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~  160 (369)
T 3ec1_A          128 AEELGLCPVDVCLVSAAKGIGMAKVMEAINRYR  160 (369)
T ss_dssp             HHTTTCCCSEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred             HHHcCCCcccEEEEECCCCCCHHHHHHHHHhhc
Confidence            455666   689999999999999999987654

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=98.83  E-value=1.2e-08  Score=76.50  Aligned_cols=136  Identities=21%  Similarity=0.212  Sum_probs=71.7

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhhCCCCCCC-------Cccc-eeeEEEEEEECCEE--EEEEEEeCCChhhh--------
Q 028300           14 SFKILLIGDSGVGKSSLLVSFISSSVDDLS-------PTIG-VDFKIKLLTVAGKR--LKLTIWDTAGQERF--------   75 (211)
Q Consensus        14 ~~~I~v~G~~~~GKssli~~l~~~~~~~~~-------~~~~-~~~~~~~~~~~~~~--~~~~l~D~~g~~~~--------   75 (211)
                      .++++++|++|+|||||++.|++.......       +... .......+......  ..++++|++|....        
T Consensus         2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~   81 (270)
T 3sop_A            2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE   81 (270)
T ss_dssp             EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence            589999999999999999999865431110       0000 11111222222222  36789999983210        


Q ss_pred             --c--------cc----------hhhhccCCcEEEEEEECC-ChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCC
Q 028300           76 --R--------TL----------TSSYYRGAQGIILVYDVT-RRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDS  134 (211)
Q Consensus        76 --~--------~~----------~~~~~~~~d~~i~v~d~~-~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~  134 (211)
                        .        ..          .+..+..+++.++++|.. .+-.-.+. . ++..+.    .. .++++|.+|+|...
T Consensus        82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~-~-~l~~L~----~~-~~vI~Vi~K~D~lt  154 (270)
T 3sop_A           82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDL-E-FMKHLS----KV-VNIIPVIAKADTMT  154 (270)
T ss_dssp             HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHH-H-HHHHHH----TT-SEEEEEETTGGGSC
T ss_pred             HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHH-H-HHHHHH----hc-CcEEEEEeccccCC
Confidence              0        00          011234568889999954 32222221 1 333332    22 89999999999865


Q ss_pred             CcccCH--HHHHHHHHHcCCeEEE
Q 028300          135 ERVVSR--EEGIALAKEHGSLFLE  156 (211)
Q Consensus       135 ~~~v~~--~~~~~~~~~~~~~~~~  156 (211)
                      ..+...  ..+......+++.+|.
T Consensus       155 ~~e~~~~k~~i~~~l~~~~i~i~~  178 (270)
T 3sop_A          155 LEEKSEFKQRVRKELEVNGIEFYP  178 (270)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCCSS
T ss_pred             HHHHHHHHHHHHHHHHHcCccccC
Confidence            433221  2233344556776654

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.81  E-value=3.9e-09  Score=79.67  Aligned_cols=59  Identities=24%  Similarity=0.373  Sum_probs=37.8

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChh
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQE   73 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~   73 (211)
                      ...++|+++|.||+|||||+|+|.+.....+.+.++++.....+....   .+.+|||||..
T Consensus       118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~~~---~~~l~DtpG~~  176 (282)
T 1puj_A          118 PRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKVGK---ELELLDTPGIL  176 (282)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHTSCCC------------CCEEETT---TEEEEECCCCC
T ss_pred             CCCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeEEEEeCC---CEEEEECcCcC
Confidence            467899999999999999999999877655666666665544444422   57899999953

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.74  E-value=3.3e-09  Score=79.22  Aligned_cols=57  Identities=19%  Similarity=0.353  Sum_probs=36.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhh
Q 028300           15 FKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER   74 (211)
Q Consensus        15 ~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~   74 (211)
                      ++|+++|.+|+|||||+|+|.+.......++++++.....+...   ..+.+|||||...
T Consensus       100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~~---~~~~l~DtpG~~~  156 (262)
T 3cnl_A          100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQWFSLE---NGVKILDTPGILY  156 (262)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTCC----------CCSCEEECT---TSCEEESSCEECC
T ss_pred             hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccceEEEEeC---CCEEEEECCCccc
Confidence            69999999999999999999988765566666665544333332   2578999999653

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=98.60  E-value=1.3e-07  Score=75.30  Aligned_cols=140  Identities=18%  Similarity=0.201  Sum_probs=76.1

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhh------CCC-----CCCCC-----------ccceeeEEEEEEEC------------
Q 028300           13 LSFKILLIGDSGVGKSSLLVSFIS------SSV-----DDLSP-----------TIGVDFKIKLLTVA------------   58 (211)
Q Consensus        13 ~~~~I~v~G~~~~GKssli~~l~~------~~~-----~~~~~-----------~~~~~~~~~~~~~~------------   58 (211)
                      .+..|+++|++|+||||++..|..      ...     +.+.+           ..+..........+            
T Consensus        99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a  178 (443)
T 3dm5_A           99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF  178 (443)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence            467899999999999999998873      111     11111           01111110000000            


Q ss_pred             -CEEEEEEEEeCCChhhhccc----h--hhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCC
Q 028300           59 -GKRLKLTIWDTAGQERFRTL----T--SSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVD  131 (211)
Q Consensus        59 -~~~~~~~l~D~~g~~~~~~~----~--~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~D  131 (211)
                       ...+.+.|+||+|.......    .  ......+|.+++|+|+..........    ..+..    .-.+..+|+||.|
T Consensus       179 ~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~a----~~f~~----~~~i~gVIlTKlD  250 (443)
T 3dm5_A          179 KSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQA----LAFKE----ATPIGSIIVTKLD  250 (443)
T ss_dssp             HHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHH----HHHHH----SCTTEEEEEECCS
T ss_pred             HhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHHHH----HHHHh----hCCCeEEEEECCC
Confidence             01256889999994322110    0  11223579999999988754332222    11211    1235579999999


Q ss_pred             CCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHH
Q 028300          132 RDSERVVSREEGIALAKEHGSLFLECSAKTRENVE  166 (211)
Q Consensus       132 l~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~  166 (211)
                      .....    -.+.......+.|+..++.  |++++
T Consensus       251 ~~~~g----G~~ls~~~~~g~PI~fig~--Ge~vd  279 (443)
T 3dm5_A          251 GSAKG----GGALSAVAATGAPIKFIGT--GEKID  279 (443)
T ss_dssp             SCSSH----HHHHHHHHTTCCCEEEEEC--SSSTT
T ss_pred             Ccccc----cHHHHHHHHHCCCEEEEEc--CCChH
Confidence            75322    2234445567888777764  44443

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=98.47  E-value=7.9e-08  Score=73.15  Aligned_cols=89  Identities=15%  Similarity=0.108  Sum_probs=61.5

Q ss_pred             cchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCccc--CHHHHHHHHHHcCCeE
Q 028300           77 TLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVV--SREEGIALAKEHGSLF  154 (211)
Q Consensus        77 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v--~~~~~~~~~~~~~~~~  154 (211)
                      .+.+..+.++|.+++|+|+.++..-.+..+.++...    ...++|.+||+||+|+.+....  ............+.++
T Consensus        78 ~l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~----~~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v  153 (307)
T 1t9h_A           78 ELIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLV----EANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDV  153 (307)
T ss_dssp             EETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHH----HTTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCE
T ss_pred             hhhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHH----HHCCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeE
Confidence            445567899999999999997765444333233222    2458899999999999765321  1233445555668899


Q ss_pred             EEeeccCCCcHHHHH
Q 028300          155 LECSAKTRENVEQCF  169 (211)
Q Consensus       155 ~~~Sa~~~~gv~~l~  169 (211)
                      +.+|+.++.|+++++
T Consensus       154 ~~~sa~~~~g~~~L~  168 (307)
T 1t9h_A          154 YLTSSKDQDSLADII  168 (307)
T ss_dssp             EECCHHHHTTCTTTG
T ss_pred             EEEecCCCCCHHHHH
Confidence            999999888877654

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.43  E-value=8.6e-08  Score=71.56  Aligned_cols=93  Identities=15%  Similarity=0.104  Sum_probs=62.6

Q ss_pred             CCChhhh-ccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHH
Q 028300           69 TAGQERF-RTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALA  147 (211)
Q Consensus        69 ~~g~~~~-~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~  147 (211)
                      .|||... .......+.++|++++|+|+.++.+..+.      .+. + .  ++|.++|+||+|+.+...  .+....+.
T Consensus         4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~------~l~-l-l--~k~~iivlNK~DL~~~~~--~~~~~~~~   71 (262)
T 3cnl_A            4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAY------GVD-F-S--RKETIILLNKVDIADEKT--TKKWVEFF   71 (262)
T ss_dssp             -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCT------TSC-C-T--TSEEEEEEECGGGSCHHH--HHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcCh------HHH-h-c--CCCcEEEEECccCCCHHH--HHHHHHHH
Confidence            5776532 23456678999999999999988654332      112 2 1  889999999999965321  22334455


Q ss_pred             HHcCCeEEEeeccCCCcHHHHHHHHHH
Q 028300          148 KEHGSLFLECSAKTRENVEQCFEQLAL  174 (211)
Q Consensus       148 ~~~~~~~~~~Sa~~~~gv~~l~~~i~~  174 (211)
                      ...+.++ .+||.++.|++++++.+.+
T Consensus        72 ~~~g~~v-~iSa~~~~gi~~L~~~l~~   97 (262)
T 3cnl_A           72 KKQGKRV-ITTHKGEPRKVLLKKLSFD   97 (262)
T ss_dssp             HHTTCCE-EECCTTSCHHHHHHHHCCC
T ss_pred             HHcCCeE-EEECCCCcCHHHHHHHHHH
Confidence            5667888 9999999999998877654

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*

Probab=98.30  E-value=8.4e-07  Score=73.18  Aligned_cols=63  Identities=19%  Similarity=0.143  Sum_probs=39.7

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHhhCCCC-CCCCc-cceeeEEEEEE--E-CCEEEEEEEEeCCChh
Q 028300           11 YDLSFKILLIGDSGVGKSSLLVSFISSSVD-DLSPT-IGVDFKIKLLT--V-AGKRLKLTIWDTAGQE   73 (211)
Q Consensus        11 ~~~~~~I~v~G~~~~GKssli~~l~~~~~~-~~~~~-~~~~~~~~~~~--~-~~~~~~~~l~D~~g~~   73 (211)
                      ....++|+|+|.||+|||||+|+|++.... ....+ .+.+.....+.  . ...+..+.|+||||..
T Consensus        35 ~~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~  102 (592)
T 1f5n_A           35 TQPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLG  102 (592)
T ss_dssp             CSBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBC
T ss_pred             cCCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcC
Confidence            356789999999999999999999987632 22111 12222111111  1 1233568899999954

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=98.29  E-value=2.3e-07  Score=74.01  Aligned_cols=131  Identities=21%  Similarity=0.187  Sum_probs=69.8

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhhC------CC-----CCCCCc-----------cc--------eeeEEEEE---EE-CC
Q 028300           14 SFKILLIGDSGVGKSSLLVSFISS------SV-----DDLSPT-----------IG--------VDFKIKLL---TV-AG   59 (211)
Q Consensus        14 ~~~I~v~G~~~~GKssli~~l~~~------~~-----~~~~~~-----------~~--------~~~~~~~~---~~-~~   59 (211)
                      ...|+++|++|+||||+++.|...      ..     +.+.+.           .+        .+.....+   .+ ..
T Consensus        99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~~  178 (432)
T 2v3c_C           99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKF  178 (432)
T ss_dssp             CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHTT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHHh
Confidence            467999999999999999998752      11     000000           00        00000000   00 01


Q ss_pred             EEEEEEEEeCCChhhhcc-ch-----hhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCc-c-EEEEeecCC
Q 028300           60 KRLKLTIWDTAGQERFRT-LT-----SSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDC-V-KMLVGNKVD  131 (211)
Q Consensus        60 ~~~~~~l~D~~g~~~~~~-~~-----~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~-p-~viv~nK~D  131 (211)
                      ..+.+.|+||||...... +.     ...+..+|.+++|+|+.....   ... ....+.     ... | ..+|+||.|
T Consensus       179 ~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~---~~~-~~~~~~-----~~~~~i~gvVlnK~D  249 (432)
T 2v3c_C          179 KKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQ---AGI-QAKAFK-----EAVGEIGSIIVTKLD  249 (432)
T ss_dssp             SSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG---HHH-HHHHHH-----TTSCSCEEEEEECSS
T ss_pred             hCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHH---HHH-HHHHHh-----hcccCCeEEEEeCCC
Confidence            345688999999543211 11     112236899999999876542   211 111111     234 4 899999999


Q ss_pred             CCCCcccCHHHHHHHHHHcCCeEEEe
Q 028300          132 RDSERVVSREEGIALAKEHGSLFLEC  157 (211)
Q Consensus       132 l~~~~~v~~~~~~~~~~~~~~~~~~~  157 (211)
                      .....    ..........+.|+..+
T Consensus       250 ~~~~~----g~~l~~~~~~~~pi~~i  271 (432)
T 2v3c_C          250 GSAKG----GGALSAVAETKAPIKFI  271 (432)
T ss_dssp             SCSTT----HHHHHHHHHSSCCEEEE
T ss_pred             Cccch----HHHHHHHHHHCCCEEEe
Confidence            74321    12334555667665544

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=98.24  E-value=6.4e-07  Score=71.26  Aligned_cols=139  Identities=22%  Similarity=0.292  Sum_probs=75.7

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhh------CCC-----CCCCC-----------ccceeeEEEE------------E-EE
Q 028300           13 LSFKILLIGDSGVGKSSLLVSFIS------SSV-----DDLSP-----------TIGVDFKIKL------------L-TV   57 (211)
Q Consensus        13 ~~~~I~v~G~~~~GKssli~~l~~------~~~-----~~~~~-----------~~~~~~~~~~------------~-~~   57 (211)
                      ....|+++|++|+||||++..|..      ...     +.+.+           ..+.......            + ..
T Consensus        96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a  175 (433)
T 3kl4_A           96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF  175 (433)
T ss_dssp             SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence            467889999999999999998862      111     11100           0011111000            0 00


Q ss_pred             CCEEEEEEEEeCCChhh--hcc-c---hhh--hccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeec
Q 028300           58 AGKRLKLTIWDTAGQER--FRT-L---TSS--YYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNK  129 (211)
Q Consensus        58 ~~~~~~~~l~D~~g~~~--~~~-~---~~~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK  129 (211)
                      ....+.+.++||||...  ... +   ...  .....|.+++|+|+...+...+....+...        -.+..+|+||
T Consensus       176 ~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~a~~f~~~--------~~~~gVIlTK  247 (433)
T 3kl4_A          176 VKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDLASRFHQA--------SPIGSVIITK  247 (433)
T ss_dssp             TTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHHHHHHHHH--------CSSEEEEEEC
T ss_pred             HhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHHHHHHhcc--------cCCcEEEEec
Confidence            11235678999999533  111 0   111  112568999999988754333322212221        2356899999


Q ss_pred             CCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcH
Q 028300          130 VDRDSERVVSREEGIALAKEHGSLFLECSAKTRENV  165 (211)
Q Consensus       130 ~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv  165 (211)
                      .|...    ....+.......+.|+..++.  |+++
T Consensus       248 lD~~a----~~G~als~~~~~g~Pi~fig~--Ge~v  277 (433)
T 3kl4_A          248 MDGTA----KGGGALSAVVATGATIKFIGT--GEKI  277 (433)
T ss_dssp             GGGCS----CHHHHHHHHHHHTCEEEEEEC--CSSS
T ss_pred             ccccc----cchHHHHHHHHHCCCEEEEEC--CCCh
Confidence            99753    223344555567889877775  5554

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=98.19  E-value=1.3e-06  Score=66.27  Aligned_cols=92  Identities=17%  Similarity=0.225  Sum_probs=54.1

Q ss_pred             EEEEEEEeCCChhh--hcc-chh-----hhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCcc-EEEEeecCC
Q 028300           61 RLKLTIWDTAGQER--FRT-LTS-----SYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCV-KMLVGNKVD  131 (211)
Q Consensus        61 ~~~~~l~D~~g~~~--~~~-~~~-----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p-~viv~nK~D  131 (211)
                      .+.+.++||||...  ... +..     ..+..+|.+++|+|+.....   ... ....+.   .  ..| ..+|+||.|
T Consensus       180 ~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~---~~~-~~~~~~---~--~~~i~gvVlnk~D  250 (297)
T 1j8m_F          180 KMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQK---AYD-LASKFN---Q--ASKIGTIIITKMD  250 (297)
T ss_dssp             TCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGG---HHH-HHHHHH---H--TCTTEEEEEECGG
T ss_pred             CCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchHH---HHH-HHHHHH---h--hCCCCEEEEeCCC
Confidence            34689999999655  211 111     12346899999999875322   221 111111   1  345 678999999


Q ss_pred             CCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHH
Q 028300          132 RDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQ  167 (211)
Q Consensus       132 l~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~  167 (211)
                      ....    ...........+.|+..++  .|.++++
T Consensus       251 ~~~~----~g~~~~~~~~~~~pi~~i~--~Ge~v~d  280 (297)
T 1j8m_F          251 GTAK----GGGALSAVAATGATIKFIG--TGEKIDE  280 (297)
T ss_dssp             GCTT----HHHHHHHHHTTTCCEEEEE--CSSSTTC
T ss_pred             CCcc----hHHHHHHHHHHCcCEEEEe--CCCChhh
Confidence            6432    2234456667788887766  4555544

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=98.18  E-value=2.7e-06  Score=70.85  Aligned_cols=22  Identities=41%  Similarity=0.598  Sum_probs=20.5

Q ss_pred             EEEEcCCCCcHHHHHHHHhhCC
Q 028300           17 ILLIGDSGVGKSSLLVSFISSS   38 (211)
Q Consensus        17 I~v~G~~~~GKssli~~l~~~~   38 (211)
                      |+|+|++|||||||++.+.+..
T Consensus        48 iaIvG~nGsGKSTLL~~I~Gl~   69 (608)
T 3szr_A           48 IAVIGDQSSGKSSVLEALSGVA   69 (608)
T ss_dssp             EECCCCTTSCHHHHHHHHHSCC
T ss_pred             EEEECCCCChHHHHHHHHhCCC
Confidence            9999999999999999998764

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=98.12  E-value=1e-05  Score=62.83  Aligned_cols=86  Identities=17%  Similarity=0.191  Sum_probs=56.3

Q ss_pred             hhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCccc-CHHHHHHHHHHcCCeEEEeec
Q 028300           81 SYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVV-SREEGIALAKEHGSLFLECSA  159 (211)
Q Consensus        81 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v-~~~~~~~~~~~~~~~~~~~Sa  159 (211)
                      ..+.++|.+++|.+.. |..-....+.++....    ..++|.+||+||+|+.+.... ............+.+++.+|+
T Consensus       126 ~i~anvD~v~iv~a~~-P~~~~~~i~r~L~~a~----~~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v~~~Sa  200 (358)
T 2rcn_A          126 PIAANIDQIVIVSAIL-PELSLNIIDRYLVGCE----TLQVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSS  200 (358)
T ss_dssp             EEEECCCEEEEEEEST-TTCCHHHHHHHHHHHH----HHTCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCCEEECBT
T ss_pred             HHHhcCCEEEEEEeCC-CCCCHHHHHHHHHHHH----hcCCCEEEEEECccCCCchhHHHHHHHHHHHHhCCCcEEEEec
Confidence            3478999999887654 5443333332333322    237788999999999754321 122233444567889999999


Q ss_pred             cCCCcHHHHHHH
Q 028300          160 KTRENVEQCFEQ  171 (211)
Q Consensus       160 ~~~~gv~~l~~~  171 (211)
                      .++.|++++...
T Consensus       201 ~~~~gl~~L~~~  212 (358)
T 2rcn_A          201 HTQDGLKPLEEA  212 (358)
T ss_dssp             TTTBTHHHHHHH
T ss_pred             CCCcCHHHHHHh
Confidence            999999887643

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=98.09  E-value=3.9e-06  Score=64.56  Aligned_cols=143  Identities=14%  Similarity=0.221  Sum_probs=74.0

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhhCCCCC-----------CCCc-----------cceeeEEEEEEEC-----------
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFISSSVDD-----------LSPT-----------IGVDFKIKLLTVA-----------   58 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~~~~~~~-----------~~~~-----------~~~~~~~~~~~~~-----------   58 (211)
                      ...-.|+++|++||||||+++.+.+.....           ....           .+..+........           
T Consensus       127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~  206 (328)
T 3e70_C          127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQH  206 (328)
T ss_dssp             CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHH
Confidence            345689999999999999999987432100           0000           0000100000000           


Q ss_pred             --CEEEEEEEEeCCChhhhccchhh------hccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecC
Q 028300           59 --GKRLKLTIWDTAGQERFRTLTSS------YYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKV  130 (211)
Q Consensus        59 --~~~~~~~l~D~~g~~~~~~~~~~------~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~  130 (211)
                        .....+.++|++|..........      ..-..|-.+++.|........+....+...+        -..++++||.
T Consensus       207 ~~~~~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~~~~~~~~~~~~~~--------~it~iilTKl  278 (328)
T 3e70_C          207 AKARGIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGNAIVEQARQFNEAV--------KIDGIILTKL  278 (328)
T ss_dssp             HHHHTCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTTHHHHHHHHHHHHS--------CCCEEEEECG
T ss_pred             HHhccchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHHHHHHHHHHHHHhc--------CCCEEEEeCc
Confidence              01123567899985432211110      1124688999999776532222211121111        2337889999


Q ss_pred             CCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHH
Q 028300          131 DRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQC  168 (211)
Q Consensus       131 Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l  168 (211)
                      |....    .-.........+.|+..++  +|.+++++
T Consensus       279 D~~a~----~G~~l~~~~~~~~pi~~i~--~Ge~v~dl  310 (328)
T 3e70_C          279 DADAR----GGAALSISYVIDAPILFVG--VGQGYDDL  310 (328)
T ss_dssp             GGCSC----CHHHHHHHHHHTCCEEEEE--CSSSTTCE
T ss_pred             CCccc----hhHHHHHHHHHCCCEEEEe--CCCCcccc
Confidence            96322    1224455667788877776  66665543

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=97.95  E-value=3.4e-07  Score=74.01  Aligned_cols=102  Identities=13%  Similarity=0.058  Sum_probs=57.0

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhh--hccch--------hh
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER--FRTLT--------SS   81 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~--~~~~~--------~~   81 (211)
                      ..+..|+++|.+||||||+.++|.........++.............+......+||..|...  ....+        ..
T Consensus        37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~~  116 (469)
T 1bif_A           37 NCPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVRK  116 (469)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            457899999999999999999997543211112211110000000001112346788888632  22222        44


Q ss_pred             hccCCcEEEEEEECCChhhHHHHHHHHHHHhhhh
Q 028300           82 YYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLY  115 (211)
Q Consensus        82 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~  115 (211)
                      ++...++.++|+|.++. +.+.... |...+...
T Consensus       117 ~l~~~~G~~vV~D~tn~-~~~~R~~-~~~~~~~~  148 (469)
T 1bif_A          117 FLSEEGGHVAVFDATNT-TRERRAM-IFNFGEQN  148 (469)
T ss_dssp             HHHTTCCSEEEEESCCC-SHHHHHH-HHHHHHHH
T ss_pred             HHHhCCCCEEEEeCCCC-CHHHHHH-HHHHHHhc
Confidence            55567888999999987 3333333 66655543

>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*

Probab=97.89  E-value=1.1e-05  Score=64.34  Aligned_cols=27  Identities=19%  Similarity=0.113  Sum_probs=23.3

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHhhC
Q 028300           11 YDLSFKILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        11 ~~~~~~I~v~G~~~~GKssli~~l~~~   37 (211)
                      ..+..-|+|+|++++|||+|+|+|++.
T Consensus        64 ~~~v~vVsV~G~~~~GKStLLN~llg~   90 (447)
T 3q5d_A           64 DKEVVAVSVAGAFRKGKSFLMDFMLRY   90 (447)
T ss_dssp             TSBEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCceEEEEEECCCCCcHHHHHHHHhhh
Confidence            345678999999999999999999863

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=97.65  E-value=0.00031  Score=56.05  Aligned_cols=24  Identities=21%  Similarity=0.285  Sum_probs=20.5

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHh
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFI   35 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~   35 (211)
                      .....|+++|.+|+||||++..|.
T Consensus        98 ~~~~vI~ivG~~GvGKTT~a~~LA  121 (433)
T 2xxa_A           98 QPPAVVLMAGLQGAGKTTSVGKLG  121 (433)
T ss_dssp             SSSEEEEEECSTTSSHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHH
Confidence            345678889999999999999887

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=97.57  E-value=4.4e-05  Score=53.47  Aligned_cols=23  Identities=35%  Similarity=0.738  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCC
Q 028300           16 KILLIGDSGVGKSSLLVSFISSS   38 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~~   38 (211)
                      +++++|++|+|||||++.+.+..
T Consensus         2 ~i~l~G~nGsGKTTLl~~l~g~l   24 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVKKIVERL   24 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            68999999999999999887653

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=97.48  E-value=6.3e-05  Score=52.67  Aligned_cols=22  Identities=27%  Similarity=0.668  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q 028300           16 KILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~   37 (211)
                      .|+++|++|||||||++.|.+.
T Consensus         7 ~i~i~GpsGsGKSTL~~~L~~~   28 (180)
T 1kgd_A            7 TLVLLGAHGVGRRHIKNTLITK   28 (180)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            5899999999999999999864

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=97.48  E-value=7.2e-05  Score=53.12  Aligned_cols=31  Identities=29%  Similarity=0.486  Sum_probs=22.5

Q ss_pred             CCCCCceeeEEEEEcCCCCcHHHHHHHHhhC
Q 028300            7 QSNSYDLSFKILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus         7 ~~~~~~~~~~I~v~G~~~~GKssli~~l~~~   37 (211)
                      .+.+....--|+|+|++|+|||||++.|...
T Consensus        12 ~~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~   42 (197)
T 3ney_A           12 ENLYFQGRKTLVLIGASGVGRSHIKNALLSQ   42 (197)
T ss_dssp             ----CCSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             ccCCCCCCCEEEEECcCCCCHHHHHHHHHhh
Confidence            3444444456899999999999999999864

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=97.43  E-value=7.7e-05  Score=53.10  Aligned_cols=22  Identities=41%  Similarity=0.676  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q 028300           16 KILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~   37 (211)
                      .++|+|++|||||||++.+.+.
T Consensus         6 ~i~lvGpsGaGKSTLl~~L~~~   27 (198)
T 1lvg_A            6 PVVLSGPSGAGKSTLLKKLFQE   27 (198)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            5899999999999999998763

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=97.36  E-value=0.0001  Score=52.42  Aligned_cols=22  Identities=27%  Similarity=0.548  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q 028300           16 KILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~   37 (211)
                      .|+++|++|||||||++.+.+.
T Consensus         9 ii~l~Gp~GsGKSTl~~~L~~~   30 (205)
T 3tr0_A            9 LFIISAPSGAGKTSLVRALVKA   30 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHHhh
Confidence            5899999999999999999865

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=97.34  E-value=0.00011  Score=51.66  Aligned_cols=23  Identities=30%  Similarity=0.452  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhhC
Q 028300           15 FKILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        15 ~~I~v~G~~~~GKssli~~l~~~   37 (211)
                      -.|+++|++|||||||++.|.+.
T Consensus        10 ~~i~l~G~~GsGKSTl~~~La~~   32 (191)
T 1zp6_A           10 NILLLSGHPGSGKSTIAEALANL   32 (191)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHTC
T ss_pred             eEEEEECCCCCCHHHHHHHHHhc
Confidence            36899999999999999999875

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=97.34  E-value=7.9e-05  Score=56.68  Aligned_cols=24  Identities=42%  Similarity=0.524  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhhCC
Q 028300           15 FKILLIGDSGVGKSSLLVSFISSS   38 (211)
Q Consensus        15 ~~I~v~G~~~~GKssli~~l~~~~   38 (211)
                      -.++++|++|||||||+|.|.+..
T Consensus       174 ~~~~lvG~sG~GKSTLln~L~g~~  197 (307)
T 1t9h_A          174 KTTVFAGQSGVGKSSLLNAISPEL  197 (307)
T ss_dssp             SEEEEEESHHHHHHHHHHHHCC--
T ss_pred             CEEEEECCCCCCHHHHHHHhcccc
Confidence            378999999999999999998654

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=97.30  E-value=0.00048  Score=52.35  Aligned_cols=22  Identities=45%  Similarity=0.647  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCC
Q 028300           16 KILLIGDSGVGKSSLLVSFISSS   38 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~~   38 (211)
                      .++++|++|+|||||+|.+. ..
T Consensus       167 i~~l~G~sG~GKSTLln~l~-~~  188 (302)
T 2yv5_A          167 ICILAGPSGVGKSSILSRLT-GE  188 (302)
T ss_dssp             EEEEECSTTSSHHHHHHHHH-SC
T ss_pred             EEEEECCCCCCHHHHHHHHH-Hh
Confidence            67999999999999999998 54

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=97.30  E-value=0.00016  Score=51.36  Aligned_cols=30  Identities=23%  Similarity=0.402  Sum_probs=23.5

Q ss_pred             CCCCCceeeEEEEEcCCCCcHHHHHHHHhh
Q 028300            7 QSNSYDLSFKILLIGDSGVGKSSLLVSFIS   36 (211)
Q Consensus         7 ~~~~~~~~~~I~v~G~~~~GKssli~~l~~   36 (211)
                      ++........|+|.|++||||||+.+.|..
T Consensus        13 ~~~~~~~~~~I~l~G~~GsGKST~a~~La~   42 (201)
T 2cdn_A           13 GLVPRGSHMRVLLLGPPGAGKGTQAVKLAE   42 (201)
T ss_dssp             ---CCCSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             cccCCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            445556667899999999999999998874

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=97.29  E-value=0.00014  Score=52.65  Aligned_cols=23  Identities=30%  Similarity=0.521  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCC
Q 028300           16 KILLIGDSGVGKSSLLVSFISSS   38 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~~   38 (211)
                      -++|+|++|||||||++.+.+..
T Consensus        18 ii~l~GpsGsGKSTLlk~L~g~~   40 (219)
T 1s96_A           18 LYIVSAPSGAGKSSLIQALLKTQ   40 (219)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhccC
Confidence            68899999999999999998643

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=97.28  E-value=0.00014  Score=52.07  Aligned_cols=27  Identities=26%  Similarity=0.361  Sum_probs=21.7

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhhCC
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFISSS   38 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~~~~   38 (211)
                      ..-=.++++|++|||||||++.+.+..
T Consensus        18 ~~Gei~~l~GpnGsGKSTLl~~l~gl~   44 (207)
T 1znw_A           18 AVGRVVVLSGPSAVGKSTVVRCLRERI   44 (207)
T ss_dssp             -CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            333468999999999999999998653

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=97.27  E-value=0.00012  Score=50.76  Aligned_cols=20  Identities=40%  Similarity=0.655  Sum_probs=17.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 028300           16 KILLIGDSGVGKSSLLVSFI   35 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~   35 (211)
                      -++++|++|||||||++.+.
T Consensus        11 i~~l~G~nGsGKSTl~~~~~   30 (171)
T 4gp7_A           11 LVVLIGSSGSGKSTFAKKHF   30 (171)
T ss_dssp             EEEEECCTTSCHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHc
Confidence            57999999999999999654

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=97.26  E-value=0.00014  Score=52.13  Aligned_cols=26  Identities=27%  Similarity=0.302  Sum_probs=22.4

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhhC
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~~~   37 (211)
                      .....|+|+|++|||||||++.+.+.
T Consensus        20 ~~g~~v~I~G~sGsGKSTl~~~l~~~   45 (208)
T 3c8u_A           20 PGRQLVALSGAPGSGKSTLSNPLAAA   45 (208)
T ss_dssp             CSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            44568999999999999999988764

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=97.24  E-value=0.00017  Score=51.61  Aligned_cols=24  Identities=33%  Similarity=0.537  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhhCC
Q 028300           15 FKILLIGDSGVGKSSLLVSFISSS   38 (211)
Q Consensus        15 ~~I~v~G~~~~GKssli~~l~~~~   38 (211)
                      --|+++|++|||||||++.|....
T Consensus         9 ~~i~l~GpsGsGKsTl~~~L~~~~   32 (208)
T 3tau_A            9 LLIVLSGPSGVGKGTVREAVFKDP   32 (208)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHST
T ss_pred             cEEEEECcCCCCHHHHHHHHHhhC
Confidence            358999999999999999998653

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=97.24  E-value=0.00017  Score=50.74  Aligned_cols=21  Identities=43%  Similarity=0.725  Sum_probs=19.2

Q ss_pred             EEEEcCCCCcHHHHHHHHhhC
Q 028300           17 ILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        17 I~v~G~~~~GKssli~~l~~~   37 (211)
                      |+|+||+|||||||+++|+..
T Consensus         4 IVi~GPSG~GK~Tl~~~L~~~   24 (186)
T 1ex7_A            4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            789999999999999999854

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=97.23  E-value=0.00014  Score=52.52  Aligned_cols=28  Identities=25%  Similarity=0.549  Sum_probs=21.9

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHhhCC
Q 028300           11 YDLSFKILLIGDSGVGKSSLLVSFISSS   38 (211)
Q Consensus        11 ~~~~~~I~v~G~~~~GKssli~~l~~~~   38 (211)
                      ...--.++|+|++|||||||++.+.+..
T Consensus        20 i~~G~~~~lvGpsGsGKSTLl~~L~g~~   47 (218)
T 1z6g_A           20 MNNIYPLVICGPSGVGKGTLIKKLLNEF   47 (218)
T ss_dssp             --CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            3344468999999999999999998743

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=97.20  E-value=0.00024  Score=49.31  Aligned_cols=22  Identities=45%  Similarity=0.555  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhh
Q 028300           15 FKILLIGDSGVGKSSLLVSFIS   36 (211)
Q Consensus        15 ~~I~v~G~~~~GKssli~~l~~   36 (211)
                      ..|++.|++||||||+.+.|..
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEecCCCCCHHHHHHHHHh
Confidence            5689999999999999999986

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=97.18  E-value=0.00022  Score=48.83  Aligned_cols=23  Identities=30%  Similarity=0.521  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCC
Q 028300           16 KILLIGDSGVGKSSLLVSFISSS   38 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~~   38 (211)
                      .++++|+.|+|||||++.+.+..
T Consensus        35 ~v~L~G~nGaGKTTLlr~l~g~l   57 (158)
T 1htw_A           35 MVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHhC
Confidence            58999999999999999998754

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=97.16  E-value=0.00024  Score=49.12  Aligned_cols=23  Identities=30%  Similarity=0.488  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhhC
Q 028300           15 FKILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        15 ~~I~v~G~~~~GKssli~~l~~~   37 (211)
                      ..|+++|++||||||+.+.|...
T Consensus         5 ~~i~l~G~~GsGKSTl~~~La~~   27 (173)
T 1kag_A            5 RNIFLVGPMGAGKSTIGRQLAQQ   27 (173)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            35999999999999999998764

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=97.15  E-value=0.00024  Score=50.69  Aligned_cols=23  Identities=35%  Similarity=0.598  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhhC
Q 028300           15 FKILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        15 ~~I~v~G~~~~GKssli~~l~~~   37 (211)
                      ..|+|+|++|||||||++.|...
T Consensus        13 ~~i~l~G~sGsGKsTl~~~L~~~   35 (204)
T 2qor_A           13 PPLVVCGPSGVGKGTLIKKVLSE   35 (204)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHh
Confidence            35899999999999999999754

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=97.15  E-value=0.00022  Score=52.22  Aligned_cols=23  Identities=30%  Similarity=0.407  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCC
Q 028300           16 KILLIGDSGVGKSSLLVSFISSS   38 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~~   38 (211)
                      .++++|+.|||||||++.+.+-.
T Consensus        33 ~~~iiG~nGsGKSTLl~~l~Gl~   55 (235)
T 3tif_A           33 FVSIMGPSGSGKSTMLNIIGCLD   55 (235)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Confidence            57999999999999999888653

>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}

Probab=97.14  E-value=0.0026  Score=45.46  Aligned_cols=86  Identities=9%  Similarity=0.057  Sum_probs=52.8

Q ss_pred             EEEEEEEeCCCh-hhhccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccC
Q 028300           61 RLKLTIWDTAGQ-ERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVS  139 (211)
Q Consensus        61 ~~~~~l~D~~g~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~  139 (211)
                      .+.+.++|+|+. ..  ......+..+|.+|+++..+. .++..+.. +...+...   .+.++.+|+|+.|.....  .
T Consensus        67 ~yD~viiD~p~~~~~--~~~~~~l~~aD~viiv~~~~~-~~~~~~~~-~~~~l~~~---~~~~~~vv~N~~~~~~~~--~  137 (209)
T 3cwq_A           67 KYQNIVIDTQARPED--EDLEALADGCDLLVIPSTPDA-LALDALML-TIETLQKL---GNNRFRILLTIIPPYPSK--D  137 (209)
T ss_dssp             GCSEEEEEEECCCSS--SHHHHHHHTSSEEEEEECSSH-HHHHHHHH-HHHHHHHT---CSSSEEEEECSBCCTTSC--H
T ss_pred             cCCEEEEeCCCCcCc--HHHHHHHHHCCEEEEEecCCc-hhHHHHHH-HHHHHHhc---cCCCEEEEEEecCCccch--H
Confidence            356889999986 32  234456778999999988764 35555555 44444432   156688999999864301  1


Q ss_pred             HHHHHHHHHHcCCeEE
Q 028300          140 REEGIALAKEHGSLFL  155 (211)
Q Consensus       140 ~~~~~~~~~~~~~~~~  155 (211)
                      ..+..+....++.+++
T Consensus       138 ~~~~~~~l~~~g~~v~  153 (209)
T 3cwq_A          138 GDEARQLLTTAGLPLF  153 (209)
T ss_dssp             HHHHHHHHHHTTCCBC
T ss_pred             HHHHHHHHHHcCCchh
Confidence            2344444555665544

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=97.14  E-value=0.00025  Score=50.49  Aligned_cols=24  Identities=33%  Similarity=0.535  Sum_probs=21.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhhCC
Q 028300           15 FKILLIGDSGVGKSSLLVSFISSS   38 (211)
Q Consensus        15 ~~I~v~G~~~~GKssli~~l~~~~   38 (211)
                      -.|+++|++||||||+++.|.+..
T Consensus         7 ~~i~l~G~~GsGKSTl~~~L~~~~   30 (207)
T 2j41_A            7 LLIVLSGPSGVGKGTVRKRIFEDP   30 (207)
T ss_dssp             CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhh
Confidence            468999999999999999998754

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=97.13  E-value=0.00025  Score=49.82  Aligned_cols=21  Identities=29%  Similarity=0.482  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhh
Q 028300           16 KILLIGDSGVGKSSLLVSFIS   36 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~   36 (211)
                      .|+++|++|||||||++.+..
T Consensus         4 ii~l~G~~GaGKSTl~~~L~~   24 (189)
T 2bdt_A            4 LYIITGPAGVGKSTTCKRLAA   24 (189)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHhc
Confidence            578999999999999999975

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=97.12  E-value=0.0003  Score=48.46  Aligned_cols=22  Identities=23%  Similarity=0.205  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q 028300           16 KILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~   37 (211)
                      .|+|.|++||||||+.+.|...
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~~   24 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSKE   24 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999998743

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=97.11  E-value=0.00029  Score=51.77  Aligned_cols=22  Identities=18%  Similarity=0.480  Sum_probs=20.2

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHh
Q 028300           14 SFKILLIGDSGVGKSSLLVSFI   35 (211)
Q Consensus        14 ~~~I~v~G~~~~GKssli~~l~   35 (211)
                      .-.|+|+|++|||||||++.|.
T Consensus        27 ~~~i~l~G~~GsGKSTl~k~La   48 (246)
T 2bbw_A           27 LLRAVILGPPGSGKGTVCQRIA   48 (246)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHH
Confidence            3579999999999999999988

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=97.11  E-value=0.00028  Score=50.12  Aligned_cols=24  Identities=21%  Similarity=0.451  Sum_probs=20.6

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhhC
Q 028300           14 SFKILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        14 ~~~I~v~G~~~~GKssli~~l~~~   37 (211)
                      .-.|+++|++|||||||++.|.+.
T Consensus        29 g~~i~l~G~~GsGKSTl~~~L~~~   52 (200)
T 4eun_A           29 TRHVVVMGVSGSGKTTIAHGVADE   52 (200)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHh
Confidence            346899999999999999988753

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=97.10  E-value=0.00027  Score=48.68  Aligned_cols=20  Identities=35%  Similarity=0.434  Sum_probs=18.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHH
Q 028300           15 FKILLIGDSGVGKSSLLVSF   34 (211)
Q Consensus        15 ~~I~v~G~~~~GKssli~~l   34 (211)
                      ..|++.|++||||||+.+.|
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHH
Confidence            36899999999999999999

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=97.10  E-value=0.00033  Score=49.08  Aligned_cols=29  Identities=24%  Similarity=0.378  Sum_probs=23.1

Q ss_pred             CCCceeeEEEEEcCCCCcHHHHHHHHhhC
Q 028300            9 NSYDLSFKILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus         9 ~~~~~~~~I~v~G~~~~GKssli~~l~~~   37 (211)
                      .......+|+++|++||||||+.+.|...
T Consensus         5 ~~~~~~~~I~l~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A            5 MEQPKGINILITGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             -CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             cCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence            33344568999999999999999988764

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=97.09  E-value=0.00027  Score=51.32  Aligned_cols=22  Identities=41%  Similarity=0.463  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q 028300           16 KILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~   37 (211)
                      .++++|+.|||||||++.+.+-
T Consensus        32 ~~~iiG~nGsGKSTLl~~l~Gl   53 (224)
T 2pcj_A           32 FVSIIGASGSGKSTLLYILGLL   53 (224)
T ss_dssp             EEEEEECTTSCHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5789999999999999988865

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=97.08  E-value=0.0003  Score=54.57  Aligned_cols=24  Identities=42%  Similarity=0.584  Sum_probs=21.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCCC
Q 028300           16 KILLIGDSGVGKSSLLVSFISSSV   39 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~~~   39 (211)
                      .++++|++|+|||||+|.|.+...
T Consensus       217 ~~~lvG~sG~GKSTLln~L~g~~~  240 (358)
T 2rcn_A          217 ISIFAGQSGVGKSSLLNALLGLQN  240 (358)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCCSS
T ss_pred             EEEEECCCCccHHHHHHHHhcccc
Confidence            689999999999999999997543

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=97.08  E-value=0.00035  Score=49.98  Aligned_cols=24  Identities=25%  Similarity=0.455  Sum_probs=21.0

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhhC
Q 028300           14 SFKILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        14 ~~~I~v~G~~~~GKssli~~l~~~   37 (211)
                      ...|+++|+.|||||||++.+.+.
T Consensus         6 ~~~i~i~G~~GsGKSTl~~~l~~~   29 (211)
T 3asz_A            6 PFVIGIAGGTASGKTTLAQALART   29 (211)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHH
Confidence            357999999999999999988763

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=97.07  E-value=0.00037  Score=51.24  Aligned_cols=29  Identities=21%  Similarity=0.190  Sum_probs=22.3

Q ss_pred             CCCCceeeEEEEEcCCCCcHHHHHHHHhh
Q 028300            8 SNSYDLSFKILLIGDSGVGKSSLLVSFIS   36 (211)
Q Consensus         8 ~~~~~~~~~I~v~G~~~~GKssli~~l~~   36 (211)
                      +........|+|+|+.|||||||++.|.+
T Consensus        19 sl~i~~g~iigI~G~~GsGKSTl~k~L~~   47 (245)
T 2jeo_A           19 YFQSMRPFLIGVSGGTASGKSTVCEKIME   47 (245)
T ss_dssp             ----CCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred             eccCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            34455667899999999999999998876

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=97.07  E-value=0.00029  Score=49.75  Aligned_cols=22  Identities=32%  Similarity=0.579  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q 028300           16 KILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~   37 (211)
                      +++++|++|+|||||++.+.+.
T Consensus         3 ~i~i~G~nG~GKTTll~~l~g~   24 (189)
T 2i3b_A            3 HVFLTGPPGVGKTTLIHKASEV   24 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHH
T ss_pred             EEEEECCCCChHHHHHHHHHhh
Confidence            4799999999999999988764

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=97.06  E-value=0.00036  Score=51.20  Aligned_cols=23  Identities=30%  Similarity=0.440  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCC
Q 028300           16 KILLIGDSGVGKSSLLVSFISSS   38 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~~   38 (211)
                      .++++|+.|||||||++.+.+-.
T Consensus        26 ~~~liG~nGsGKSTLl~~l~Gl~   48 (240)
T 2onk_A           26 YCVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57999999999999999988753

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=97.04  E-value=0.00032  Score=48.88  Aligned_cols=24  Identities=29%  Similarity=0.560  Sum_probs=20.9

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhhC
Q 028300           14 SFKILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        14 ~~~I~v~G~~~~GKssli~~l~~~   37 (211)
                      .-.++++|++|+|||||++.+.+.
T Consensus        38 g~~~~l~G~~G~GKTtL~~~i~~~   61 (180)
T 3ec2_A           38 GKGLTFVGSPGVGKTHLAVATLKA   61 (180)
T ss_dssp             CCEEEECCSSSSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHH
Confidence            456899999999999999998764

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=97.03  E-value=0.00036  Score=51.07  Aligned_cols=22  Identities=36%  Similarity=0.700  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q 028300           16 KILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~   37 (211)
                      .++++|+.|+|||||++.+.+.
T Consensus        33 ~~~i~G~nGsGKSTLl~~l~Gl   54 (237)
T 2cbz_A           33 LVAVVGQVGCGKSSLLSALLAE   54 (237)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            6899999999999999998865

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=97.03  E-value=0.00034  Score=52.05  Aligned_cols=23  Identities=39%  Similarity=0.479  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCC
Q 028300           16 KILLIGDSGVGKSSLLVSFISSS   38 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~~   38 (211)
                      .++++|+.|||||||++.+.+-.
T Consensus        34 ~~~liG~nGsGKSTLlk~l~Gl~   56 (262)
T 1b0u_A           34 VISIIGSSGSGKSTFLRCINFLE   56 (262)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            57999999999999999988653

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=97.02  E-value=0.00035  Score=50.31  Aligned_cols=22  Identities=27%  Similarity=0.517  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q 028300           16 KILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~   37 (211)
                      .++++|+.|+|||||++.+.+-
T Consensus        37 ~~~iiG~NGsGKSTLlk~l~Gl   58 (214)
T 1sgw_A           37 VVNFHGPNGIGKTTLLKTISTY   58 (214)
T ss_dssp             CEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999998865

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=97.02  E-value=0.00034  Score=52.41  Aligned_cols=23  Identities=35%  Similarity=0.570  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCC
Q 028300           16 KILLIGDSGVGKSSLLVSFISSS   38 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~~   38 (211)
                      .++++|+.|||||||++.+.+-.
T Consensus        36 ~~~iiGpnGsGKSTLl~~l~Gl~   58 (275)
T 3gfo_A           36 VTAILGGNGVGKSTLFQNFNGIL   58 (275)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            57999999999999999888653

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=97.02  E-value=0.00051  Score=47.54  Aligned_cols=22  Identities=32%  Similarity=0.439  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhh
Q 028300           15 FKILLIGDSGVGKSSLLVSFIS   36 (211)
Q Consensus        15 ~~I~v~G~~~~GKssli~~l~~   36 (211)
                      -.|+++|++||||||+.+.|..
T Consensus         9 ~~i~l~G~~GsGKSTl~~~l~~   30 (175)
T 1knq_A            9 HIYVLMGVSGSGKSAVASEVAH   30 (175)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHH
T ss_pred             cEEEEEcCCCCCHHHHHHHHHH
Confidence            4689999999999999998864

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=97.00  E-value=0.00041  Score=51.02  Aligned_cols=23  Identities=30%  Similarity=0.333  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCC
Q 028300           16 KILLIGDSGVGKSSLLVSFISSS   38 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~~   38 (211)
                      .++++|+.|+|||||++.+.+-.
T Consensus        30 ~~~i~G~nGsGKSTLl~~l~Gl~   52 (243)
T 1mv5_A           30 IIAFAGPSGGGKSTIFSLLERFY   52 (243)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            68999999999999999988653

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=97.00  E-value=0.00044  Score=49.51  Aligned_cols=21  Identities=19%  Similarity=0.455  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhh
Q 028300           16 KILLIGDSGVGKSSLLVSFIS   36 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~   36 (211)
                      +|+++|+|||||+|....|..
T Consensus         2 ~Iil~GpPGsGKgTqa~~La~   22 (206)
T 3sr0_A            2 ILVFLGPPGAGKGTQAKRLAK   22 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999998873

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=97.00  E-value=0.00046  Score=48.99  Aligned_cols=22  Identities=36%  Similarity=0.593  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhh
Q 028300           15 FKILLIGDSGVGKSSLLVSFIS   36 (211)
Q Consensus        15 ~~I~v~G~~~~GKssli~~l~~   36 (211)
                      -.|+++|++||||||+.+.|..
T Consensus        26 ~~i~l~G~~GsGKsTl~~~La~   47 (199)
T 3vaa_A           26 VRIFLTGYMGAGKTTLGKAFAR   47 (199)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHH
Confidence            4799999999999999998874

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=97.00  E-value=0.00041  Score=51.14  Aligned_cols=23  Identities=35%  Similarity=0.356  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCC
Q 028300           16 KILLIGDSGVGKSSLLVSFISSS   38 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~~   38 (211)
                      .++++|+.|+|||||++.+.+-.
T Consensus        37 ~~~i~G~nGsGKSTLl~~l~Gl~   59 (247)
T 2ff7_A           37 VIGIVGRSGSGKSTLTKLIQRFY   59 (247)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            68999999999999999988763

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=97.00  E-value=0.00042  Score=50.45  Aligned_cols=23  Identities=30%  Similarity=0.573  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCC
Q 028300           16 KILLIGDSGVGKSSLLVSFISSS   38 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~~   38 (211)
                      .++++|+.|+|||||++.+.+..
T Consensus        36 ~~~i~G~nGsGKSTLl~~l~Gl~   58 (229)
T 2pze_A           36 LLAVAGSTGAGKTSLLMMIMGEL   58 (229)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            67999999999999999988653

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=96.99  E-value=0.00044  Score=49.63  Aligned_cols=21  Identities=33%  Similarity=0.559  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhh
Q 028300           16 KILLIGDSGVGKSSLLVSFIS   36 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~   36 (211)
                      +|+|.|++||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3fb4_A            2 NIVLMGLPGAGKGTQAEQIIE   22 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            699999999999999998853

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=96.99  E-value=0.00042  Score=52.61  Aligned_cols=23  Identities=35%  Similarity=0.356  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhhC
Q 028300           15 FKILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        15 ~~I~v~G~~~~GKssli~~l~~~   37 (211)
                      =.++|+|++|+|||||++.|.+-
T Consensus       127 e~vaIvGpsGsGKSTLl~lL~gl  149 (305)
T 2v9p_A          127 NCLAFIGPPNTGKSMLCNSLIHF  149 (305)
T ss_dssp             SEEEEECSSSSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCcHHHHHHHHhhh
Confidence            37899999999999999998864

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=96.99  E-value=0.00041  Score=51.71  Aligned_cols=23  Identities=35%  Similarity=0.522  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCC
Q 028300           16 KILLIGDSGVGKSSLLVSFISSS   38 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~~   38 (211)
                      .++++|+.|||||||++.+.+-.
T Consensus        39 ~~~liG~nGsGKSTLl~~l~Gl~   61 (266)
T 4g1u_C           39 MVAIIGPNGAGKSTLLRLLTGYL   61 (266)
T ss_dssp             EEEEECCTTSCHHHHHHHHTSSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Confidence            57999999999999999988653

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=96.99  E-value=0.00061  Score=48.37  Aligned_cols=26  Identities=23%  Similarity=0.397  Sum_probs=21.8

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHhh
Q 028300           11 YDLSFKILLIGDSGVGKSSLLVSFIS   36 (211)
Q Consensus        11 ~~~~~~I~v~G~~~~GKssli~~l~~   36 (211)
                      ......|+|.|++||||||+.+.|..
T Consensus        12 ~~~~~~I~l~G~~GsGKsT~~~~L~~   37 (203)
T 1ukz_A           12 PDQVSVIFVLGGPGAGKGTQCEKLVK   37 (203)
T ss_dssp             TTTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHH
Confidence            34456899999999999999998874

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=96.99  E-value=0.00042  Score=49.26  Aligned_cols=24  Identities=33%  Similarity=0.407  Sum_probs=20.6

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhhC
Q 028300           14 SFKILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        14 ~~~I~v~G~~~~GKssli~~l~~~   37 (211)
                      ...|+|+|++||||||+.+.|...
T Consensus        18 ~~~I~l~G~~GsGKSTla~~L~~~   41 (202)
T 3t61_A           18 PGSIVVMGVSGSGKSSVGEAIAEA   41 (202)
T ss_dssp             SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            347999999999999999988643

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=96.98  E-value=0.00045  Score=49.08  Aligned_cols=21  Identities=38%  Similarity=0.561  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhh
Q 028300           16 KILLIGDSGVGKSSLLVSFIS   36 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~   36 (211)
                      +|+|+|++||||||+.+.|..
T Consensus         3 ~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            3 RIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHH
Confidence            699999999999999999876

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=96.98  E-value=0.00051  Score=48.91  Aligned_cols=22  Identities=27%  Similarity=0.495  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhh
Q 028300           15 FKILLIGDSGVGKSSLLVSFIS   36 (211)
Q Consensus        15 ~~I~v~G~~~~GKssli~~l~~   36 (211)
                      +.|+++|++||||||+.+.|..
T Consensus         3 ~~i~l~G~~GsGKST~~~~La~   24 (206)
T 1jjv_A            3 YIVGLTGGIGSGKTTIANLFTD   24 (206)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999999975

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=96.98  E-value=0.00045  Score=48.04  Aligned_cols=23  Identities=30%  Similarity=0.403  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhhC
Q 028300           15 FKILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        15 ~~I~v~G~~~~GKssli~~l~~~   37 (211)
                      ..++|+|++|+|||||++++...
T Consensus         7 ~~i~i~G~sGsGKTTl~~~l~~~   29 (174)
T 1np6_A            7 PLLAFAAWSGTGKTTLLKKLIPA   29 (174)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHh
Confidence            46899999999999999999864

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=96.98  E-value=0.00069  Score=48.30  Aligned_cols=29  Identities=21%  Similarity=0.228  Sum_probs=24.1

Q ss_pred             CCCceeeEEEEEcCCCCcHHHHHHHHhhC
Q 028300            9 NSYDLSFKILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus         9 ~~~~~~~~I~v~G~~~~GKssli~~l~~~   37 (211)
                      ........|+|+|++||||||+.+.|...
T Consensus        16 ~~~~~~~~i~i~G~~GsGKSTl~~~L~~~   44 (207)
T 2qt1_A           16 PRGSKTFIIGISGVTNSGKTTLAKNLQKH   44 (207)
T ss_dssp             CCSCCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred             ccCCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence            34455678999999999999999998864

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=96.98  E-value=0.00046  Score=49.54  Aligned_cols=21  Identities=24%  Similarity=0.469  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhh
Q 028300           16 KILLIGDSGVGKSSLLVSFIS   36 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~   36 (211)
                      +|+|+|++||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3dl0_A            2 NLVLMGLPGAGKGTQGERIVE   22 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            699999999999999999863

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=96.97  E-value=0.00044  Score=51.29  Aligned_cols=23  Identities=35%  Similarity=0.492  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCC
Q 028300           16 KILLIGDSGVGKSSLLVSFISSS   38 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~~   38 (211)
                      .++++|+.|||||||++.+.+-.
T Consensus        35 ~~~liG~nGsGKSTLlk~l~Gl~   57 (257)
T 1g6h_A           35 VTLIIGPNGSGKSTLINVITGFL   57 (257)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            58999999999999999988653

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=96.97  E-value=0.00045  Score=51.37  Aligned_cols=22  Identities=36%  Similarity=0.536  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q 028300           16 KILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~   37 (211)
                      .++++|+.|+|||||++.+.+-
T Consensus        52 i~~liG~NGsGKSTLlk~l~Gl   73 (263)
T 2olj_A           52 VVVVIGPSGSGKSTFLRCLNLL   73 (263)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Confidence            5799999999999999998865

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=96.97  E-value=0.00049  Score=49.72  Aligned_cols=22  Identities=32%  Similarity=0.389  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhh
Q 028300           15 FKILLIGDSGVGKSSLLVSFIS   36 (211)
Q Consensus        15 ~~I~v~G~~~~GKssli~~l~~   36 (211)
                      ..|+++|++||||||+.+.|..
T Consensus         6 ~~i~i~G~~GsGKSTl~~~L~~   27 (227)
T 1cke_A            6 PVITIDGPSGAGKGTLCKAMAE   27 (227)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999998864

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=96.97  E-value=0.00048  Score=48.29  Aligned_cols=21  Identities=33%  Similarity=0.450  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhh
Q 028300           16 KILLIGDSGVGKSSLLVSFIS   36 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~   36 (211)
                      .|+|.|++||||||+.+.|..
T Consensus         3 ~I~i~G~~GsGKsT~~~~L~~   23 (194)
T 1nks_A            3 IGIVTGIPGVGKSTVLAKVKE   23 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999998864

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=96.96  E-value=0.00036  Score=50.06  Aligned_cols=22  Identities=23%  Similarity=0.365  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q 028300           16 KILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~   37 (211)
                      .++++|+.|+|||||++.+.+.
T Consensus        24 ~~~liG~nGsGKSTLl~~l~Gl   45 (208)
T 3b85_A           24 IVFGLGPAGSGKTYLAMAKAVQ   45 (208)
T ss_dssp             EEEEECCTTSSTTHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5799999999999999999876

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=96.96  E-value=0.00056  Score=50.21  Aligned_cols=24  Identities=17%  Similarity=0.357  Sum_probs=21.5

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhh
Q 028300           13 LSFKILLIGDSGVGKSSLLVSFIS   36 (211)
Q Consensus        13 ~~~~I~v~G~~~~GKssli~~l~~   36 (211)
                      ...+|+|+|++||||||+.+.|..
T Consensus        28 ~~~~I~l~G~~GsGKsT~a~~L~~   51 (243)
T 3tlx_A           28 PDGRYIFLGAPGSGKGTQSLNLKK   51 (243)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            567899999999999999999863

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=96.96  E-value=0.00061  Score=52.00  Aligned_cols=27  Identities=26%  Similarity=0.277  Sum_probs=23.4

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHhhC
Q 028300           11 YDLSFKILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        11 ~~~~~~I~v~G~~~~GKssli~~l~~~   37 (211)
                      ......|+|+|++|||||||++.+.+.
T Consensus        87 ~~~g~ivgI~G~sGsGKSTL~~~L~gl  113 (312)
T 3aez_A           87 RPVPFIIGVAGSVAVGKSTTARVLQAL  113 (312)
T ss_dssp             SCCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCchHHHHHHHHHhh
Confidence            456678999999999999999988764

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=96.95  E-value=0.00048  Score=50.82  Aligned_cols=22  Identities=36%  Similarity=0.616  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q 028300           16 KILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~   37 (211)
                      .++++|+.|+|||||++.+.+-
T Consensus        28 ~~~liG~NGsGKSTLlk~l~Gl   49 (249)
T 2qi9_C           28 ILHLVGPNGAGKSTLLARMAGM   49 (249)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            5799999999999999998865

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=96.95  E-value=0.00049  Score=51.12  Aligned_cols=22  Identities=41%  Similarity=0.631  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q 028300           16 KILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~   37 (211)
                      .++|+|++|||||||++.+.+.
T Consensus        27 ~v~i~Gp~GsGKSTll~~l~g~   48 (261)
T 2eyu_A           27 LILVTGPTGSGKSTTIASMIDY   48 (261)
T ss_dssp             EEEEECSTTCSHHHHHHHHHHH
T ss_pred             EEEEECCCCccHHHHHHHHHHh
Confidence            6899999999999999998753

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=96.95  E-value=0.00048  Score=50.53  Aligned_cols=23  Identities=30%  Similarity=0.504  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCC
Q 028300           16 KILLIGDSGVGKSSLLVSFISSS   38 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~~   38 (211)
                      .++++|+.|+|||||++.+.+-.
T Consensus        34 ~~~l~G~nGsGKSTLl~~l~Gl~   56 (240)
T 1ji0_A           34 IVTLIGANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57999999999999999988653

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=96.95  E-value=0.00054  Score=48.54  Aligned_cols=21  Identities=33%  Similarity=0.571  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhh
Q 028300           16 KILLIGDSGVGKSSLLVSFIS   36 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~   36 (211)
                      .|+|.|++||||||+.+.|..
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~   22 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISK   22 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCccCHHHHHHHHHH
Confidence            589999999999999998875

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=96.94  E-value=0.00048  Score=51.18  Aligned_cols=22  Identities=27%  Similarity=0.434  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q 028300           16 KILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~   37 (211)
                      .++++|+.|+|||||++.+.+-
T Consensus        48 ~~~i~G~nGsGKSTLl~~l~Gl   69 (260)
T 2ghi_A           48 TCALVGHTGSGKSTIAKLLYRF   69 (260)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcc
Confidence            6899999999999999998865

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=96.94  E-value=0.00049  Score=47.71  Aligned_cols=23  Identities=35%  Similarity=0.424  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhhC
Q 028300           15 FKILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        15 ~~I~v~G~~~~GKssli~~l~~~   37 (211)
                      ..|++.|++||||||+.+.|...
T Consensus         4 ~~i~l~G~~GsGKST~a~~La~~   26 (178)
T 1qhx_A            4 RMIILNGGSSAGKSGIVRCLQSV   26 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHh
Confidence            35899999999999999998763

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=96.94  E-value=0.0005  Score=50.96  Aligned_cols=23  Identities=30%  Similarity=0.356  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCC
Q 028300           16 KILLIGDSGVGKSSLLVSFISSS   38 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~~   38 (211)
                      .++++|+.|+|||||++.+.+-.
T Consensus        43 i~~l~G~NGsGKSTLlk~l~Gl~   65 (256)
T 1vpl_A           43 IFGLIGPNGAGKTTTLRIISTLI   65 (256)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            57999999999999999988653

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=96.94  E-value=0.00058  Score=47.92  Aligned_cols=23  Identities=22%  Similarity=0.420  Sum_probs=20.5

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhh
Q 028300           14 SFKILLIGDSGVGKSSLLVSFIS   36 (211)
Q Consensus        14 ~~~I~v~G~~~~GKssli~~l~~   36 (211)
                      ...|++.|++||||||+.+.|..
T Consensus         5 ~~~I~l~G~~GsGKST~~~~L~~   27 (193)
T 2rhm_A            5 PALIIVTGHPATGKTTLSQALAT   27 (193)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999999874

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=96.94  E-value=0.00052  Score=50.65  Aligned_cols=22  Identities=32%  Similarity=0.404  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q 028300           16 KILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~   37 (211)
                      .++++|+.|+|||||++.+.+-
T Consensus        31 ~~~l~G~nGsGKSTLlk~l~Gl   52 (250)
T 2d2e_A           31 VHALMGPNGAGKSTLGKILAGD   52 (250)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5789999999999999999875

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=96.93  E-value=0.0005  Score=48.84  Aligned_cols=25  Identities=32%  Similarity=0.349  Sum_probs=21.3

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhhC
Q 028300           13 LSFKILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        13 ~~~~I~v~G~~~~GKssli~~l~~~   37 (211)
                      ..-.|+++|++||||||+.+.|...
T Consensus        24 ~g~~i~l~G~sGsGKSTl~~~La~~   48 (200)
T 3uie_A           24 KGCVIWVTGLSGSGKSTLACALNQM   48 (200)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            3457999999999999999988754

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=96.93  E-value=0.00079  Score=51.51  Aligned_cols=26  Identities=23%  Similarity=0.287  Sum_probs=22.6

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHhh
Q 028300           11 YDLSFKILLIGDSGVGKSSLLVSFIS   36 (211)
Q Consensus        11 ~~~~~~I~v~G~~~~GKssli~~l~~   36 (211)
                      ...++-|+|+|++|||||||++.|.+
T Consensus        89 ~~~p~iigI~GpsGSGKSTl~~~L~~  114 (321)
T 3tqc_A           89 PKVPYIIGIAGSVAVGKSTTSRVLKA  114 (321)
T ss_dssp             CCCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            45678899999999999999998864

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=96.92  E-value=0.00056  Score=51.03  Aligned_cols=22  Identities=27%  Similarity=0.471  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q 028300           16 KILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~   37 (211)
                      .++++|+.|+|||||++.+.+-
T Consensus        48 ~~~l~G~NGsGKSTLlk~l~Gl   69 (267)
T 2zu0_C           48 VHAIMGPNGSGKSTLSATLAGR   69 (267)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5799999999999999999875

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=96.92  E-value=0.00052  Score=51.50  Aligned_cols=23  Identities=35%  Similarity=0.481  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCC
Q 028300           16 KILLIGDSGVGKSSLLVSFISSS   38 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~~   38 (211)
                      .++++|+.|+|||||++.+.+..
T Consensus        49 ~~~liG~NGsGKSTLlk~l~Gl~   71 (279)
T 2ihy_A           49 KWILYGLNGAGKTTLLNILNAYE   71 (279)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            57999999999999999988653

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=96.91  E-value=0.00053  Score=51.26  Aligned_cols=23  Identities=26%  Similarity=0.365  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCC
Q 028300           16 KILLIGDSGVGKSSLLVSFISSS   38 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~~   38 (211)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        47 ~~~i~G~nGsGKSTLlk~l~Gl~   69 (271)
T 2ixe_A           47 VTALVGPNGSGKSTVAALLQNLY   69 (271)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            57999999999999999988653

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=96.91  E-value=0.00072  Score=47.22  Aligned_cols=23  Identities=17%  Similarity=0.439  Sum_probs=20.2

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhh
Q 028300           14 SFKILLIGDSGVGKSSLLVSFIS   36 (211)
Q Consensus        14 ~~~I~v~G~~~~GKssli~~l~~   36 (211)
                      ...|+++|++||||||+.+.|..
T Consensus         4 g~~I~l~G~~GsGKST~~~~La~   26 (186)
T 3cm0_A            4 GQAVIFLGPPGAGKGTQASRLAQ   26 (186)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999998873

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=96.91  E-value=0.00065  Score=47.69  Aligned_cols=23  Identities=17%  Similarity=0.537  Sum_probs=20.3

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhh
Q 028300           14 SFKILLIGDSGVGKSSLLVSFIS   36 (211)
Q Consensus        14 ~~~I~v~G~~~~GKssli~~l~~   36 (211)
                      ...|++.|.+||||||+.+.|..
T Consensus         3 ~~~I~l~G~~GsGKsT~a~~L~~   25 (196)
T 1tev_A            3 PLVVFVLGGPGAGKGTQCARIVE   25 (196)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            46799999999999999998864

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=96.90  E-value=0.00033  Score=48.58  Aligned_cols=22  Identities=23%  Similarity=0.523  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q 028300           16 KILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~   37 (211)
                      .|+|+|++|||||||++.+.+.
T Consensus         4 ~v~IvG~SGsGKSTL~~~L~~~   25 (171)
T 2f1r_A            4 ILSIVGTSDSGKTTLITRMMPI   25 (171)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999998865

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=96.90  E-value=0.00062  Score=47.66  Aligned_cols=22  Identities=18%  Similarity=0.271  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhh
Q 028300           15 FKILLIGDSGVGKSSLLVSFIS   36 (211)
Q Consensus        15 ~~I~v~G~~~~GKssli~~l~~   36 (211)
                      ..|+|.|++||||||+.+.|..
T Consensus         4 ~~I~i~G~~GsGKsT~~~~L~~   25 (192)
T 1kht_A            4 KVVVVTGVPGVGSTTSSQLAMD   25 (192)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999998864

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=96.89  E-value=0.00052  Score=49.57  Aligned_cols=22  Identities=23%  Similarity=0.335  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q 028300           16 KILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~   37 (211)
                      -++++|++|+|||||++.+.+.
T Consensus        27 ~~~l~G~nGsGKSTll~~l~g~   48 (231)
T 4a74_A           27 ITEVFGEFGSGKTQLAHTLAVM   48 (231)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5799999999999999999874

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=96.89  E-value=0.00057  Score=50.55  Aligned_cols=23  Identities=30%  Similarity=0.563  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCC
Q 028300           16 KILLIGDSGVGKSSLLVSFISSS   38 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~~   38 (211)
                      .++++|+.|+|||||++.+.+-.
T Consensus        33 ~~~l~G~nGsGKSTLl~~l~Gl~   55 (253)
T 2nq2_C           33 ILAVLGQNGCGKSTLLDLLLGIH   55 (253)
T ss_dssp             EEEEECCSSSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57999999999999999988753

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=96.88  E-value=0.00035  Score=50.78  Aligned_cols=26  Identities=19%  Similarity=0.416  Sum_probs=16.7

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHh-hC
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFI-SS   37 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~-~~   37 (211)
                      ..--.|+++|++|||||||++.|. +.
T Consensus        25 ~~G~ii~l~Gp~GsGKSTl~~~L~~~~   51 (231)
T 3lnc_A           25 SVGVILVLSSPSGCGKTTVANKLLEKQ   51 (231)
T ss_dssp             ECCCEEEEECSCC----CHHHHHHC--
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhcC
Confidence            333468999999999999999998 54

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=96.86  E-value=0.00069  Score=49.96  Aligned_cols=28  Identities=25%  Similarity=0.298  Sum_probs=21.6

Q ss_pred             CCCceeeEEEEEcCCCCcHHHHHHHHhh
Q 028300            9 NSYDLSFKILLIGDSGVGKSSLLVSFIS   36 (211)
Q Consensus         9 ~~~~~~~~I~v~G~~~~GKssli~~l~~   36 (211)
                      ......+.|+|.|++||||||+.+.|..
T Consensus        17 ~~~~~~~iI~I~G~~GSGKST~a~~L~~   44 (252)
T 1uj2_A           17 PNGGEPFLIGVSGGTASGKSSVCAKIVQ   44 (252)
T ss_dssp             ----CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ccCCCcEEEEEECCCCCCHHHHHHHHHH
Confidence            3445567899999999999999998865

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=96.86  E-value=0.0006  Score=50.80  Aligned_cols=23  Identities=35%  Similarity=0.507  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCC
Q 028300           16 KILLIGDSGVGKSSLLVSFISSS   38 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~~   38 (211)
                      .++++|+.|+|||||++.+.+-.
T Consensus        35 ~~~liG~nGsGKSTLl~~i~Gl~   57 (266)
T 2yz2_A           35 CLLVAGNTGSGKSTLLQIVAGLI   57 (266)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            67899999999999999988653

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=96.85  E-value=0.00057  Score=51.86  Aligned_cols=24  Identities=42%  Similarity=0.389  Sum_probs=21.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCCC
Q 028300           16 KILLIGDSGVGKSSLLVSFISSSV   39 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~~~   39 (211)
                      .++++|++|+|||||+|.+.+...
T Consensus       171 iv~l~G~sG~GKSTll~~l~g~~~  194 (301)
T 1u0l_A          171 ISTMAGLSGVGKSSLLNAINPGLK  194 (301)
T ss_dssp             EEEEECSTTSSHHHHHHHHSTTCC
T ss_pred             eEEEECCCCCcHHHHHHHhccccc
Confidence            579999999999999999987543

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=96.85  E-value=0.0007  Score=47.27  Aligned_cols=22  Identities=36%  Similarity=0.454  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhh
Q 028300           15 FKILLIGDSGVGKSSLLVSFIS   36 (211)
Q Consensus        15 ~~I~v~G~~~~GKssli~~l~~   36 (211)
                      ..|+++|++||||||+.+.|..
T Consensus         6 ~~i~l~G~~GsGKst~a~~La~   27 (185)
T 3trf_A            6 TNIYLIGLMGAGKTSVGSQLAK   27 (185)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999999864

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=96.85  E-value=0.00065  Score=50.54  Aligned_cols=23  Identities=30%  Similarity=0.615  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCC
Q 028300           16 KILLIGDSGVGKSSLLVSFISSS   38 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~~   38 (211)
                      .++++|+.|+|||||++.+.+..
T Consensus        32 ~~~i~G~NGsGKSTLlk~l~Gl~   54 (263)
T 2pjz_A           32 KVIILGPNGSGKTTLLRAISGLL   54 (263)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57999999999999999988763

>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*

Probab=96.85  E-value=0.0019  Score=51.54  Aligned_cols=62  Identities=19%  Similarity=0.280  Sum_probs=39.1

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhh------------------CCCC----CCCCccceeeEEEEE--EE-CCEEEEEEE
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFIS------------------SSVD----DLSPTIGVDFKIKLL--TV-AGKRLKLTI   66 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~~------------------~~~~----~~~~~~~~~~~~~~~--~~-~~~~~~~~l   66 (211)
                      ....-|+|+|+.++|||+|+|.|++                  ..|.    ....|.|...-...+  .. ++....+.+
T Consensus        65 ~~v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vll  144 (457)
T 4ido_A           65 KEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLL  144 (457)
T ss_dssp             SBEEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEEE
T ss_pred             CceEEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEEE
Confidence            4566778999999999999996642                  1231    122344443332221  11 456788999


Q ss_pred             EeCCChh
Q 028300           67 WDTAGQE   73 (211)
Q Consensus        67 ~D~~g~~   73 (211)
                      +||.|..
T Consensus       145 lDTEG~~  151 (457)
T 4ido_A          145 MDTQGTF  151 (457)
T ss_dssp             EEECCBT
T ss_pred             EeccCCC
Confidence            9999954

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=96.84  E-value=0.00063  Score=53.07  Aligned_cols=25  Identities=20%  Similarity=0.333  Sum_probs=22.2

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhhCC
Q 028300           14 SFKILLIGDSGVGKSSLLVSFISSS   38 (211)
Q Consensus        14 ~~~I~v~G~~~~GKssli~~l~~~~   38 (211)
                      .-+++|+|++|+|||||++.|.+..
T Consensus       170 g~k~~IvG~nGsGKSTLlk~L~gl~  194 (365)
T 1lw7_A          170 AKTVAILGGESSGKSVLVNKLAAVF  194 (365)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred             hCeEEEECCCCCCHHHHHHHHHHHh
Confidence            5689999999999999999998753

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=96.84  E-value=0.00068  Score=48.63  Aligned_cols=21  Identities=24%  Similarity=0.447  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhh
Q 028300           16 KILLIGDSGVGKSSLLVSFIS   36 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~   36 (211)
                      +|+|.|++||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (214)
T 1e4v_A            2 RIILLGAPVAGKGTQAQFIME   22 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999998864

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=96.84  E-value=0.0008  Score=47.94  Aligned_cols=23  Identities=30%  Similarity=0.278  Sum_probs=20.6

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhh
Q 028300           14 SFKILLIGDSGVGKSSLLVSFIS   36 (211)
Q Consensus        14 ~~~I~v~G~~~~GKssli~~l~~   36 (211)
                      ...|+|.|++||||||+.+.|..
T Consensus         4 ~~~I~i~G~~GsGKsT~~~~L~~   26 (213)
T 2plr_A            4 GVLIAFEGIDGSGKSSQATLLKD   26 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHH
Confidence            35799999999999999999875

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=96.83  E-value=0.00068  Score=47.16  Aligned_cols=24  Identities=46%  Similarity=0.578  Sum_probs=20.7

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhh
Q 028300           13 LSFKILLIGDSGVGKSSLLVSFIS   36 (211)
Q Consensus        13 ~~~~I~v~G~~~~GKssli~~l~~   36 (211)
                      ....|++.|++||||||+.+.|..
T Consensus        10 ~~~~i~i~G~~GsGKst~~~~l~~   33 (180)
T 3iij_A           10 LLPNILLTGTPGVGKTTLGKELAS   33 (180)
T ss_dssp             CCCCEEEECSTTSSHHHHHHHHHH
T ss_pred             cCCeEEEEeCCCCCHHHHHHHHHH
Confidence            345789999999999999998874

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=96.80  E-value=0.001  Score=47.45  Aligned_cols=23  Identities=22%  Similarity=0.166  Sum_probs=20.6

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhh
Q 028300           14 SFKILLIGDSGVGKSSLLVSFIS   36 (211)
Q Consensus        14 ~~~I~v~G~~~~GKssli~~l~~   36 (211)
                      ...|+|.|.+||||||+.+.|..
T Consensus        10 ~~~I~l~G~~GsGKST~~~~L~~   32 (212)
T 2wwf_A           10 GKFIVFEGLDRSGKSTQSKLLVE   32 (212)
T ss_dssp             SCEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHH
Confidence            45799999999999999998874

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=96.80  E-value=0.00083  Score=50.62  Aligned_cols=26  Identities=31%  Similarity=0.423  Sum_probs=22.3

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHhh
Q 028300           11 YDLSFKILLIGDSGVGKSSLLVSFIS   36 (211)
Q Consensus        11 ~~~~~~I~v~G~~~~GKssli~~l~~   36 (211)
                      ......|++.|++||||||+.+.|..
T Consensus        30 ~~~~~livl~G~sGsGKSTla~~L~~   55 (287)
T 1gvn_B           30 VESPTAFLLGGQPGSGKTSLRSAIFE   55 (287)
T ss_dssp             CSSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            34567899999999999999999974

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=96.80  E-value=0.00056  Score=52.01  Aligned_cols=22  Identities=36%  Similarity=0.603  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q 028300           16 KILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~   37 (211)
                      .++|+|+.|+|||||++.+.+-
T Consensus        82 ~vaivG~sGsGKSTLl~ll~gl  103 (306)
T 3nh6_A           82 TLALVGPSGAGKSTILRLLFRF  103 (306)
T ss_dssp             EEEEESSSCHHHHHHHHHHTTS
T ss_pred             EEEEECCCCchHHHHHHHHHcC
Confidence            6899999999999999988765

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=96.79  E-value=0.00076  Score=48.86  Aligned_cols=23  Identities=17%  Similarity=0.484  Sum_probs=20.4

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhh
Q 028300           14 SFKILLIGDSGVGKSSLLVSFIS   36 (211)
Q Consensus        14 ~~~I~v~G~~~~GKssli~~l~~   36 (211)
                      ...|+|.|++||||||+.+.|..
T Consensus         7 ~~~I~l~G~~GsGKsT~a~~La~   29 (227)
T 1zd8_A            7 LLRAVIMGAPGSGKGTVSSRITT   29 (227)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            36799999999999999998863

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=96.79  E-value=0.00069  Score=46.93  Aligned_cols=21  Identities=38%  Similarity=0.566  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhh
Q 028300           16 KILLIGDSGVGKSSLLVSFIS   36 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~   36 (211)
                      +|+|+|++||||||+.+.|..
T Consensus         6 ~i~i~G~~GsGKsTla~~La~   26 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAK   26 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            599999999999999998864

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=96.78  E-value=0.00085  Score=48.83  Aligned_cols=25  Identities=20%  Similarity=0.397  Sum_probs=21.4

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhh
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFIS   36 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~~   36 (211)
                      ....+|+|+|.+||||||+.+.|..
T Consensus        14 ~~~~~I~l~G~~GsGKsT~a~~La~   38 (233)
T 1ak2_A           14 PKGVRAVLLGPPGAGKGTQAPKLAK   38 (233)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3446899999999999999998864

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=96.78  E-value=0.0011  Score=50.07  Aligned_cols=26  Identities=23%  Similarity=0.321  Sum_probs=22.0

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHhh
Q 028300           11 YDLSFKILLIGDSGVGKSSLLVSFIS   36 (211)
Q Consensus        11 ~~~~~~I~v~G~~~~GKssli~~l~~   36 (211)
                      ......|+|.|++|||||||++.|..
T Consensus        28 ~~~~~ii~I~G~sGsGKSTla~~L~~   53 (290)
T 1odf_A           28 NKCPLFIFFSGPQGSGKSFTSIQIYN   53 (290)
T ss_dssp             CCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            34567899999999999999988764

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=96.76  E-value=0.00077  Score=50.43  Aligned_cols=22  Identities=32%  Similarity=0.514  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q 028300           16 KILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~   37 (211)
                      .++++|++|+|||||++.+.+.
T Consensus        46 GvlL~Gp~GtGKTtLakala~~   67 (274)
T 2x8a_A           46 GVLLAGPPGCGKTLLAKAVANE   67 (274)
T ss_dssp             EEEEESSTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHH
Confidence            3999999999999999999864

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=96.76  E-value=0.00086  Score=48.29  Aligned_cols=22  Identities=27%  Similarity=0.566  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhh
Q 028300           15 FKILLIGDSGVGKSSLLVSFIS   36 (211)
Q Consensus        15 ~~I~v~G~~~~GKssli~~l~~   36 (211)
                      ..|+|+|++||||||+.+.|..
T Consensus         5 ~~I~l~G~~GsGKsT~a~~La~   26 (220)
T 1aky_A            5 IRMVLIGPPGAGKGTQAPNLQE   26 (220)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999998864

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=96.76  E-value=0.0011  Score=46.39  Aligned_cols=23  Identities=17%  Similarity=0.458  Sum_probs=20.3

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhh
Q 028300           14 SFKILLIGDSGVGKSSLLVSFIS   36 (211)
Q Consensus        14 ~~~I~v~G~~~~GKssli~~l~~   36 (211)
                      ...|++.|++||||||+.+.|..
T Consensus         6 ~~~I~l~G~~GsGKsT~~~~L~~   28 (194)
T 1qf9_A            6 PNVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999998864

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=96.75  E-value=0.00054  Score=46.36  Aligned_cols=22  Identities=36%  Similarity=0.671  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q 028300           16 KILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~   37 (211)
                      .++++|++|+|||+|++.+.+.
T Consensus        38 ~~~l~G~~G~GKTtL~~~i~~~   59 (149)
T 2kjq_A           38 FIYVWGEEGAGKSHLLQAWVAQ   59 (149)
T ss_dssp             EEEEESSSTTTTCHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5889999999999999998864

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=96.75  E-value=0.0012  Score=46.84  Aligned_cols=25  Identities=20%  Similarity=0.130  Sum_probs=21.5

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhh
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFIS   36 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~~   36 (211)
                      .....|+++|++|||||||++.|.+
T Consensus        20 ~~~~~i~i~G~~GsGKstl~~~l~~   44 (201)
T 1rz3_A           20 AGRLVLGIDGLSRSGKTTLANQLSQ   44 (201)
T ss_dssp             SSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3456799999999999999998874

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=96.73  E-value=0.001  Score=45.58  Aligned_cols=21  Identities=33%  Similarity=0.322  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhh
Q 028300           16 KILLIGDSGVGKSSLLVSFIS   36 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~   36 (211)
                      +|+|.|.+||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSR   22 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999998875

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=96.73  E-value=0.00084  Score=50.65  Aligned_cols=22  Identities=32%  Similarity=0.631  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q 028300           16 KILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~   37 (211)
                      .++++|+.|+|||||++.+.+.
T Consensus        66 ~~~i~G~NGsGKSTLlk~l~Gl   87 (290)
T 2bbs_A           66 LLAVAGSTGAGKTSLLMMIMGE   87 (290)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhcC
Confidence            5799999999999999998865

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=96.71  E-value=0.00083  Score=52.15  Aligned_cols=23  Identities=35%  Similarity=0.616  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCC
Q 028300           16 KILLIGDSGVGKSSLLVSFISSS   38 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~~   38 (211)
                      .++++|++|+|||||++.+.+-.
T Consensus        32 ~~~llGpsGsGKSTLLr~iaGl~   54 (359)
T 3fvq_A           32 ILFIIGASGCGKTTLLRCLAGFE   54 (359)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCchHHHHHHHHhcCC
Confidence            47899999999999999998764

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=96.71  E-value=0.0015  Score=45.68  Aligned_cols=26  Identities=19%  Similarity=0.367  Sum_probs=21.9

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhhC
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~~~   37 (211)
                      .....|++.|.+||||||+.+.|...
T Consensus        11 ~~~~~i~l~G~~GsGKsT~~~~L~~~   36 (186)
T 2yvu_A           11 EKGIVVWLTGLPGSGKTTIATRLADL   36 (186)
T ss_dssp             SCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence            34567999999999999999988753

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=96.71  E-value=0.0012  Score=46.62  Aligned_cols=25  Identities=28%  Similarity=0.300  Sum_probs=22.0

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhhC
Q 028300           13 LSFKILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        13 ~~~~I~v~G~~~~GKssli~~l~~~   37 (211)
                      ....|+|.|++||||||+.+.|...
T Consensus         7 ~~~~I~i~G~~GsGKST~~~~La~~   31 (203)
T 1uf9_A            7 HPIIIGITGNIGSGKSTVAALLRSW   31 (203)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHC
Confidence            3568999999999999999998865

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=96.71  E-value=0.00092  Score=49.35  Aligned_cols=27  Identities=33%  Similarity=0.358  Sum_probs=22.9

Q ss_pred             CCceeeEEEEEcCCCCcHHHHHHHHhh
Q 028300           10 SYDLSFKILLIGDSGVGKSSLLVSFIS   36 (211)
Q Consensus        10 ~~~~~~~I~v~G~~~~GKssli~~l~~   36 (211)
                      .......|+++|++||||||+.+.|..
T Consensus        28 ~~~~~~~i~l~G~~GsGKSTla~~L~~   54 (253)
T 2p5t_B           28 SSKQPIAILLGGQSGAGKTTIHRIKQK   54 (253)
T ss_dssp             CCSSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred             cccCCeEEEEECCCCCCHHHHHHHHHH
Confidence            345567899999999999999999864

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=96.71  E-value=0.00074  Score=48.73  Aligned_cols=23  Identities=17%  Similarity=0.345  Sum_probs=20.1

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhh
Q 028300           14 SFKILLIGDSGVGKSSLLVSFIS   36 (211)
Q Consensus        14 ~~~I~v~G~~~~GKssli~~l~~   36 (211)
                      ...|+|+|++||||||+.+.|..
T Consensus         5 ~~~I~l~G~~GsGKsT~~~~La~   27 (222)
T 1zak_A            5 PLKVMISGAPASGKGTQCELIKT   27 (222)
T ss_dssp             SCCEEEEESTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999998864

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=96.71  E-value=0.001  Score=45.95  Aligned_cols=23  Identities=17%  Similarity=0.362  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhhC
Q 028300           15 FKILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        15 ~~I~v~G~~~~GKssli~~l~~~   37 (211)
                      ..|+++|++|||||||+.++...
T Consensus         5 ~~i~i~G~sGsGKTTl~~~L~~~   27 (169)
T 1xjc_A            5 NVWQVVGYKHSGKTTLMEKWVAA   27 (169)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHh
Confidence            36899999999999999998853

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=96.70  E-value=0.0012  Score=46.85  Aligned_cols=23  Identities=22%  Similarity=0.288  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhhC
Q 028300           15 FKILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        15 ~~I~v~G~~~~GKssli~~l~~~   37 (211)
                      ..|+|.|++||||||+.+.|...
T Consensus         5 ~~I~l~G~~GsGKsT~~~~L~~~   27 (204)
T 2v54_A            5 ALIVFEGLDKSGKTTQCMNIMES   27 (204)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHT
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHH
Confidence            57999999999999999999865

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=96.69  E-value=0.0013  Score=50.12  Aligned_cols=26  Identities=23%  Similarity=0.346  Sum_probs=22.2

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhhC
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~~~   37 (211)
                      .....|+|+|++|||||||++.|.+.
T Consensus        78 ~~g~iigI~G~~GsGKSTl~~~L~~~  103 (308)
T 1sq5_A           78 RIPYIISIAGSVAVGKSTTARVLQAL  103 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            34467999999999999999988763

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=96.68  E-value=0.00044  Score=49.43  Aligned_cols=22  Identities=27%  Similarity=0.433  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q 028300           16 KILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~   37 (211)
                      .|+|.|++||||||+++.|...
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~~   23 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSGA   23 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            4899999999999999998743

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=96.68  E-value=0.00099  Score=49.07  Aligned_cols=22  Identities=36%  Similarity=0.641  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q 028300           16 KILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~   37 (211)
                      .++++|++|+|||||++.+.+.
T Consensus        51 g~ll~G~~G~GKTtl~~~i~~~   72 (254)
T 1ixz_A           51 GVLLVGPPGVGKTHLARAVAGE   72 (254)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            3999999999999999999865

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=96.68  E-value=0.001  Score=51.66  Aligned_cols=22  Identities=32%  Similarity=0.601  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q 028300           16 KILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~   37 (211)
                      .|+|+|++|||||||++.+.+.
T Consensus       125 ~i~I~GptGSGKTTlL~~l~g~  146 (356)
T 3jvv_A          125 LVLVTGPTGSGKSTTLAAMLDY  146 (356)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhc
Confidence            7999999999999999998753

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=96.68  E-value=0.00098  Score=46.86  Aligned_cols=23  Identities=22%  Similarity=0.450  Sum_probs=20.2

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhh
Q 028300           14 SFKILLIGDSGVGKSSLLVSFIS   36 (211)
Q Consensus        14 ~~~I~v~G~~~~GKssli~~l~~   36 (211)
                      ...|++.|++||||||+.+.|..
T Consensus         9 ~~~I~l~G~~GsGKsT~~~~La~   31 (196)
T 2c95_A            9 TNIIFVVGGPGSGKGTQCEKIVQ   31 (196)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999998864

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=96.67  E-value=0.0011  Score=47.84  Aligned_cols=21  Identities=29%  Similarity=0.396  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhh
Q 028300           16 KILLIGDSGVGKSSLLVSFIS   36 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~   36 (211)
                      .|+|.|++||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~   22 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKD   22 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999998864

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=96.66  E-value=0.00098  Score=51.70  Aligned_cols=23  Identities=30%  Similarity=0.465  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCC
Q 028300           16 KILLIGDSGVGKSSLLVSFISSS   38 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~~   38 (211)
                      .++++|++|+|||||++.+.+-.
T Consensus        43 ~~~llGpnGsGKSTLLr~iaGl~   65 (355)
T 1z47_A           43 MVGLLGPSGSGKTTILRLIAGLE   65 (355)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            57899999999999999988664

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=96.66  E-value=0.001  Score=51.76  Aligned_cols=23  Identities=35%  Similarity=0.371  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCC
Q 028300           16 KILLIGDSGVGKSSLLVSFISSS   38 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~~   38 (211)
                      .++++|+.|||||||++.+.+-.
T Consensus        56 i~~IiGpnGaGKSTLlr~i~GL~   78 (366)
T 3tui_C           56 IYGVIGASGAGKSTLIRCVNLLE   78 (366)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEEcCCCchHHHHHHHHhcCC
Confidence            57899999999999999888653

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=96.66  E-value=0.001  Score=50.59  Aligned_cols=22  Identities=27%  Similarity=0.517  Sum_probs=19.7

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHh
Q 028300           14 SFKILLIGDSGVGKSSLLVSFI   35 (211)
Q Consensus        14 ~~~I~v~G~~~~GKssli~~l~   35 (211)
                      .-.|+++|++||||||+++.+.
T Consensus       102 g~vi~lvG~nGsGKTTll~~La  123 (304)
T 1rj9_A          102 GRVVLVVGVNGVGKTTTIAKLG  123 (304)
T ss_dssp             SSEEEEECSTTSSHHHHHHHHH
T ss_pred             CeEEEEECCCCCcHHHHHHHHH
Confidence            3478999999999999999987

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=96.66  E-value=0.0011  Score=49.07  Aligned_cols=21  Identities=19%  Similarity=0.371  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhh
Q 028300           16 KILLIGDSGVGKSSLLVSFIS   36 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~   36 (211)
                      .|+|+|++|||||||.+.|..
T Consensus         3 li~I~G~~GSGKSTla~~La~   23 (253)
T 2ze6_A            3 LHLIYGPTCSGKTDMAIQIAQ   23 (253)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999999864

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=96.64  E-value=0.001  Score=51.67  Aligned_cols=23  Identities=30%  Similarity=0.492  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCC
Q 028300           16 KILLIGDSGVGKSSLLVSFISSS   38 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~~   38 (211)
                      .++++|++|+|||||++.+.+-.
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl~   53 (359)
T 2yyz_A           31 FVALLGPSGCGKTTTLLMLAGIY   53 (359)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEEcCCCchHHHHHHHHHCCC
Confidence            57899999999999999998654

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=96.64  E-value=0.0012  Score=47.20  Aligned_cols=23  Identities=26%  Similarity=0.286  Sum_probs=20.7

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhh
Q 028300           14 SFKILLIGDSGVGKSSLLVSFIS   36 (211)
Q Consensus        14 ~~~I~v~G~~~~GKssli~~l~~   36 (211)
                      ...|+|.|.+||||||+.+.|..
T Consensus         9 ~~~I~l~G~~GsGKsT~~~~L~~   31 (215)
T 1nn5_A            9 GALIVLEGVDRAGKSTQSRKLVE   31 (215)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            46799999999999999999874

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=96.64  E-value=0.0017  Score=46.86  Aligned_cols=21  Identities=24%  Similarity=0.536  Sum_probs=18.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhh
Q 028300           16 KILLIGDSGVGKSSLLVSFIS   36 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~   36 (211)
                      -|+|+|+|||||+|....|..
T Consensus        31 iI~llGpPGsGKgTqa~~L~~   51 (217)
T 3umf_A           31 VIFVLGGPGSGKGTQCEKLVQ   51 (217)
T ss_dssp             EEEEECCTTCCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            467789999999999998864

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=96.64  E-value=0.0012  Score=46.50  Aligned_cols=23  Identities=26%  Similarity=0.469  Sum_probs=20.4

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhh
Q 028300           14 SFKILLIGDSGVGKSSLLVSFIS   36 (211)
Q Consensus        14 ~~~I~v~G~~~~GKssli~~l~~   36 (211)
                      ...|++.|++||||||+.+.|..
T Consensus        12 ~~~I~l~G~~GsGKsT~a~~L~~   34 (199)
T 2bwj_A           12 CKIIFIIGGPGSGKGTQCEKLVE   34 (199)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999998864

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=96.63  E-value=0.0011  Score=51.59  Aligned_cols=23  Identities=39%  Similarity=0.541  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCC
Q 028300           16 KILLIGDSGVGKSSLLVSFISSS   38 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~~   38 (211)
                      .++++|+.|+|||||++.+.+-.
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl~   53 (362)
T 2it1_A           31 FMALLGPSGSGKSTLLYTIAGIY   53 (362)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCchHHHHHHHHhcCC
Confidence            57899999999999999998754

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=96.63  E-value=0.0013  Score=45.65  Aligned_cols=23  Identities=30%  Similarity=0.599  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhhC
Q 028300           15 FKILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        15 ~~I~v~G~~~~GKssli~~l~~~   37 (211)
                      -.+++.|++|+|||+|++.+...
T Consensus        44 ~~~ll~G~~G~GKT~l~~~~~~~   66 (195)
T 1jbk_A           44 NNPVLIGEPGVGKTAIVEGLAQR   66 (195)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CceEEECCCCCCHHHHHHHHHHH
Confidence            45899999999999999988754

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=96.63  E-value=0.0013  Score=46.11  Aligned_cols=21  Identities=24%  Similarity=0.300  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhh
Q 028300           16 KILLIGDSGVGKSSLLVSFIS   36 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~   36 (211)
                      .|++.|.+||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~   22 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYE   22 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999875

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=96.62  E-value=0.0013  Score=48.61  Aligned_cols=22  Identities=32%  Similarity=0.394  Sum_probs=20.0

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHh
Q 028300           14 SFKILLIGDSGVGKSSLLVSFI   35 (211)
Q Consensus        14 ~~~I~v~G~~~~GKssli~~l~   35 (211)
                      ...|+|+|++||||||+++.|.
T Consensus        27 g~~I~I~G~~GsGKSTl~k~La   48 (252)
T 4e22_A           27 APVITVDGPSGAGKGTLCKALA   48 (252)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHH
Confidence            3579999999999999999887

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=96.62  E-value=0.0011  Score=51.83  Aligned_cols=23  Identities=35%  Similarity=0.554  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCC
Q 028300           16 KILLIGDSGVGKSSLLVSFISSS   38 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~~   38 (211)
                      .++++|++|+|||||++.+.+-.
T Consensus        31 ~~~llGpsGsGKSTLLr~iaGl~   53 (381)
T 3rlf_A           31 FVVFVGPSGCGKSTLLRMIAGLE   53 (381)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEEcCCCchHHHHHHHHHcCC
Confidence            47899999999999999998764

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=96.61  E-value=0.0016  Score=46.83  Aligned_cols=23  Identities=30%  Similarity=0.556  Sum_probs=20.8

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhh
Q 028300           14 SFKILLIGDSGVGKSSLLVSFIS   36 (211)
Q Consensus        14 ~~~I~v~G~~~~GKssli~~l~~   36 (211)
                      ...|+|.|.+||||||+.+.|..
T Consensus         4 ~~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            4 RYIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999999875

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=96.61  E-value=0.0012  Score=47.47  Aligned_cols=22  Identities=27%  Similarity=0.448  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhh
Q 028300           15 FKILLIGDSGVGKSSLLVSFIS   36 (211)
Q Consensus        15 ~~I~v~G~~~~GKssli~~l~~   36 (211)
                      .+|+|+|++||||||+.+.|..
T Consensus         6 ~~I~l~G~~GsGKsT~a~~La~   27 (217)
T 3be4_A            6 HNLILIGAPGSGKGTQCEFIKK   27 (217)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999998864

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=96.59  E-value=0.0019  Score=49.04  Aligned_cols=27  Identities=22%  Similarity=0.404  Sum_probs=22.3

Q ss_pred             CCceeeEEEEEcCCCCcHHHHHHHHhh
Q 028300           10 SYDLSFKILLIGDSGVGKSSLLVSFIS   36 (211)
Q Consensus        10 ~~~~~~~I~v~G~~~~GKssli~~l~~   36 (211)
                      .....-.++++|+.||||||+++.+.+
T Consensus        96 ~~~~g~vi~lvG~nGsGKTTll~~Lag  122 (302)
T 3b9q_A           96 GFRKPAVIMIVGVNGGGKTTSLGKLAH  122 (302)
T ss_dssp             CSSSCEEEEEECCTTSCHHHHHHHHHH
T ss_pred             ccCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence            344556789999999999999998874

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=96.59  E-value=0.0012  Score=51.57  Aligned_cols=23  Identities=30%  Similarity=0.488  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCC
Q 028300           16 KILLIGDSGVGKSSLLVSFISSS   38 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~~   38 (211)
                      .++++|+.|+|||||++.+.+-.
T Consensus        39 ~~~llGpnGsGKSTLLr~iaGl~   61 (372)
T 1v43_A           39 FLVLLGPSGCGKTTTLRMIAGLE   61 (372)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHHcCC
Confidence            57899999999999999988654

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=96.59  E-value=0.0012  Score=51.63  Aligned_cols=23  Identities=30%  Similarity=0.498  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCC
Q 028300           16 KILLIGDSGVGKSSLLVSFISSS   38 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~~   38 (211)
                      .++++|++|+|||||++.+.+-.
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl~   53 (372)
T 1g29_1           31 FMILLGPSGCGKTTTLRMIAGLE   53 (372)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCcHHHHHHHHHHcCC
Confidence            47899999999999999998764

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=96.57  E-value=0.0012  Score=50.81  Aligned_cols=23  Identities=22%  Similarity=0.528  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCC
Q 028300           16 KILLIGDSGVGKSSLLVSFISSS   38 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~~   38 (211)
                      .++++|++|||||||++.+.+..
T Consensus       173 ~v~i~G~~GsGKTTll~~l~g~~  195 (330)
T 2pt7_A          173 NVIVCGGTGSGKTTYIKSIMEFI  195 (330)
T ss_dssp             CEEEEESTTSCHHHHHHHGGGGS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            68999999999999999998653

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=96.57  E-value=0.0013  Score=51.43  Aligned_cols=22  Identities=41%  Similarity=0.631  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q 028300           16 KILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~   37 (211)
                      .|+|+|++|||||||++.+.+.
T Consensus       138 ~i~ivG~~GsGKTTll~~l~~~  159 (372)
T 2ewv_A          138 LILVTGPTGSGKSTTIASMIDY  159 (372)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            6899999999999999998763

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=96.57  E-value=0.001  Score=51.55  Aligned_cols=23  Identities=22%  Similarity=0.424  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCC
Q 028300           16 KILLIGDSGVGKSSLLVSFISSS   38 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~~   38 (211)
                      .++++|+.|+|||||++.+.+-.
T Consensus        28 ~~~llGpnGsGKSTLLr~iaGl~   50 (348)
T 3d31_A           28 YFVILGPTGAGKTLFLELIAGFH   50 (348)
T ss_dssp             EEEEECCCTHHHHHHHHHHHTSS
T ss_pred             EEEEECCCCccHHHHHHHHHcCC
Confidence            57899999999999999998654

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=96.56  E-value=0.0014  Score=45.09  Aligned_cols=21  Identities=19%  Similarity=0.458  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhh
Q 028300           16 KILLIGDSGVGKSSLLVSFIS   36 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~   36 (211)
                      .|++.|.+||||||+.+.|..
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~   24 (173)
T 1e6c_A            4 PIFMVGARGCGMTTVGRELAR   24 (173)
T ss_dssp             CEEEESCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999998864

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=96.54  E-value=0.0014  Score=47.32  Aligned_cols=22  Identities=36%  Similarity=0.643  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q 028300           16 KILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~   37 (211)
                      -++++|++|+|||||+..+...
T Consensus        25 ~~~i~G~~GsGKTtl~~~l~~~   46 (235)
T 2w0m_A           25 FIALTGEPGTGKTIFSLHFIAK   46 (235)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            5789999999999999998844

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=96.54  E-value=0.0013  Score=50.59  Aligned_cols=22  Identities=36%  Similarity=0.607  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q 028300           16 KILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~   37 (211)
                      .++++|++|+|||||++.+.+.
T Consensus        53 ~~ll~Gp~G~GKTTLa~~ia~~   74 (334)
T 1in4_A           53 HVLLAGPPGLGKTTLAHIIASE   74 (334)
T ss_dssp             CEEEESSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHH
Confidence            4899999999999999999864

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=96.54  E-value=0.0014  Score=48.59  Aligned_cols=22  Identities=36%  Similarity=0.555  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhh
Q 028300           15 FKILLIGDSGVGKSSLLVSFIS   36 (211)
Q Consensus        15 ~~I~v~G~~~~GKssli~~l~~   36 (211)
                      ..|++.|.+||||||+.+.|..
T Consensus         5 ~lIvl~G~pGSGKSTla~~La~   26 (260)
T 3a4m_A            5 MLIILTGLPGVGKSTFSKNLAK   26 (260)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEEcCCCCCHHHHHHHHHH
Confidence            4699999999999999999875

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=96.53  E-value=0.0013  Score=51.30  Aligned_cols=22  Identities=27%  Similarity=0.688  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q 028300           16 KILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~   37 (211)
                      .++|+|+.|||||||++.+.+.
T Consensus       177 ~i~ivG~sGsGKSTll~~l~~~  198 (361)
T 2gza_A          177 VIVVAGETGSGKTTLMKALMQE  198 (361)
T ss_dssp             CEEEEESSSSCHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHHhc
Confidence            7899999999999999999865

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=96.53  E-value=0.0015  Score=45.57  Aligned_cols=21  Identities=33%  Similarity=0.491  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhh
Q 028300           16 KILLIGDSGVGKSSLLVSFIS   36 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~   36 (211)
                      .|+++|++||||||+.+.|..
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~   24 (184)
T 2iyv_A            4 KAVLVGLPGSGKSTIGRRLAK   24 (184)
T ss_dssp             SEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999998864

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=96.53  E-value=0.0016  Score=47.49  Aligned_cols=25  Identities=28%  Similarity=0.340  Sum_probs=20.9

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhh
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFIS   36 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~~   36 (211)
                      ..++.|+|.|++|+||||+.+.+..
T Consensus         7 ~~~~~i~i~G~~GsGKsTla~~la~   31 (233)
T 3r20_A            7 SGSLVVAVDGPAGTGKSSVSRGLAR   31 (233)
T ss_dssp             --CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3467899999999999999998874

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=96.50  E-value=0.0015  Score=48.82  Aligned_cols=22  Identities=36%  Similarity=0.641  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q 028300           16 KILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~   37 (211)
                      .|+++|++|+|||||++.+.+.
T Consensus        75 gvll~Gp~GtGKTtl~~~i~~~   96 (278)
T 1iy2_A           75 GVLLVGPPGVGKTHLARAVAGE   96 (278)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCcChHHHHHHHHHHH
Confidence            4999999999999999999865

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=96.49  E-value=0.002  Score=46.83  Aligned_cols=26  Identities=31%  Similarity=0.547  Sum_probs=22.4

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhhC
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~~~   37 (211)
                      ....-|+|.|+.||||||+++.|.+.
T Consensus        18 ~~g~~i~i~G~~GsGKSTl~~~L~~~   43 (230)
T 2vp4_A           18 TQPFTVLIEGNIGSGKTTYLNHFEKY   43 (230)
T ss_dssp             CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhc
Confidence            44567999999999999999988765

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=96.49  E-value=0.0019  Score=44.85  Aligned_cols=22  Identities=27%  Similarity=0.475  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhh
Q 028300           15 FKILLIGDSGVGKSSLLVSFIS   36 (211)
Q Consensus        15 ~~I~v~G~~~~GKssli~~l~~   36 (211)
                      -.|+++|.+||||||+.+.|..
T Consensus         6 ~~i~l~G~~GsGKST~~~~L~~   27 (179)
T 2pez_A            6 CTVWLTGLSGAGKTTVSMALEE   27 (179)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999998875

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=96.48  E-value=0.0019  Score=44.31  Aligned_cols=21  Identities=43%  Similarity=0.487  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhh
Q 028300           16 KILLIGDSGVGKSSLLVSFIS   36 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~   36 (211)
                      .|++.|.+||||||+.+.|..
T Consensus         9 ~i~l~G~~GsGKSTva~~La~   29 (168)
T 1zuh_A            9 HLVLIGFMGSGKSSLAQELGL   29 (168)
T ss_dssp             EEEEESCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999998864

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=96.47  E-value=0.0015  Score=51.84  Aligned_cols=22  Identities=36%  Similarity=0.520  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q 028300           16 KILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~   37 (211)
                      .|+|+|+.|||||||++.+++.
T Consensus       169 ii~I~GpnGSGKTTlL~allg~  190 (418)
T 1p9r_A          169 IILVTGPTGSGKSTTLYAGLQE  190 (418)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHhh
Confidence            5899999999999999998864

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=96.46  E-value=0.0013  Score=45.72  Aligned_cols=22  Identities=27%  Similarity=0.283  Sum_probs=15.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhh
Q 028300           15 FKILLIGDSGVGKSSLLVSFIS   36 (211)
Q Consensus        15 ~~I~v~G~~~~GKssli~~l~~   36 (211)
                      ..|++.|.+||||||+.+.|..
T Consensus         6 ~~I~l~G~~GsGKST~a~~La~   27 (183)
T 2vli_A            6 PIIWINGPFGVGKTHTAHTLHE   27 (183)
T ss_dssp             CEEEEECCC----CHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4699999999999999999874

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=96.44  E-value=0.00098  Score=51.72  Aligned_cols=23  Identities=22%  Similarity=0.472  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCC
Q 028300           16 KILLIGDSGVGKSSLLVSFISSS   38 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~~   38 (211)
                      .++++|+.|+|||||++.+.+-.
T Consensus        33 ~~~llGpnGsGKSTLLr~iaGl~   55 (353)
T 1oxx_K           33 RFGILGPSGAGKTTFMRIIAGLD   55 (353)
T ss_dssp             EEEEECSCHHHHHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            57899999999999999988764

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=96.43  E-value=0.0017  Score=49.04  Aligned_cols=22  Identities=27%  Similarity=0.416  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q 028300           16 KILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~   37 (211)
                      -++|+|++|+|||||+..+.+.
T Consensus        37 ~~~i~G~~G~GKTTl~~~ia~~   58 (296)
T 1cr0_A           37 VIMVTSGSGMGKSTFVRQQALQ   58 (296)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHH
Confidence            5789999999999999998765

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=96.42  E-value=0.0017  Score=51.11  Aligned_cols=22  Identities=41%  Similarity=0.768  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q 028300           16 KILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~   37 (211)
                      .++++|++|+|||||++.+.+-
T Consensus        49 ~~~llGpsGsGKSTLLr~iaGl   70 (390)
T 3gd7_A           49 RVGLLGRTGSGKSTLLSAFLRL   70 (390)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCChHHHHHHHHhCC
Confidence            5899999999999999998864

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=96.41  E-value=0.005  Score=41.11  Aligned_cols=23  Identities=17%  Similarity=0.297  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhhC
Q 028300           15 FKILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        15 ~~I~v~G~~~~GKssli~~l~~~   37 (211)
                      ..|.+.|++|+|||++.+.+...
T Consensus        28 ~~vll~G~~GtGKt~lA~~i~~~   50 (143)
T 3co5_A           28 SPVFLTGEAGSPFETVARYFHKN   50 (143)
T ss_dssp             SCEEEEEETTCCHHHHHGGGCCT
T ss_pred             CcEEEECCCCccHHHHHHHHHHh
Confidence            45899999999999999987654

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=96.40  E-value=0.0016  Score=45.04  Aligned_cols=24  Identities=29%  Similarity=0.577  Sum_probs=20.4

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhhC
Q 028300           14 SFKILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        14 ~~~I~v~G~~~~GKssli~~l~~~   37 (211)
                      .-.+++.|++|+|||+|++.+...
T Consensus        43 ~~~vll~G~~G~GKT~la~~~~~~   66 (187)
T 2p65_A           43 KNNPILLGDPGVGKTAIVEGLAIK   66 (187)
T ss_dssp             SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHHHH
Confidence            346799999999999999988754

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=96.39  E-value=0.0017  Score=52.89  Aligned_cols=23  Identities=17%  Similarity=0.424  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCC
Q 028300           16 KILLIGDSGVGKSSLLVSFISSS   38 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~~   38 (211)
                      .|+|+|++|||||||++.+++.-
T Consensus       262 ~i~I~GptGSGKTTlL~aL~~~i  284 (511)
T 2oap_1          262 SAIVVGETASGKTTTLNAIMMFI  284 (511)
T ss_dssp             CEEEEESTTSSHHHHHHHHGGGS
T ss_pred             EEEEECCCCCCHHHHHHHHHhhC
Confidence            48999999999999999998643

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=96.38  E-value=0.0032  Score=48.94  Aligned_cols=27  Identities=22%  Similarity=0.404  Sum_probs=22.4

Q ss_pred             CCceeeEEEEEcCCCCcHHHHHHHHhh
Q 028300           10 SYDLSFKILLIGDSGVGKSSLLVSFIS   36 (211)
Q Consensus        10 ~~~~~~~I~v~G~~~~GKssli~~l~~   36 (211)
                      .....-.|+++|+.||||||+++.+.+
T Consensus       153 ~~~~g~vi~lvG~nGsGKTTll~~Lag  179 (359)
T 2og2_A          153 GFRKPAVIMIVGVNGGGKTTSLGKLAH  179 (359)
T ss_dssp             CSSSSEEEEEECCTTSCHHHHHHHHHH
T ss_pred             ecCCCeEEEEEcCCCChHHHHHHHHHh
Confidence            344556799999999999999998874

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=96.37  E-value=0.0021  Score=47.44  Aligned_cols=24  Identities=25%  Similarity=0.475  Sum_probs=20.9

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhhC
Q 028300           14 SFKILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        14 ~~~I~v~G~~~~GKssli~~l~~~   37 (211)
                      +-.|++.|++|+|||+|++.+.+.
T Consensus        45 ~~~vll~G~~GtGKT~la~~la~~   68 (257)
T 1lv7_A           45 PKGVLMVGPPGTGKTLLAKAIAGE   68 (257)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHH
Confidence            346999999999999999999764

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=96.37  E-value=0.0022  Score=48.08  Aligned_cols=25  Identities=32%  Similarity=0.317  Sum_probs=21.6

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhh
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFIS   36 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~~   36 (211)
                      .....|+|.|++||||||+.+.|..
T Consensus        73 ~~~~iI~I~G~~GSGKSTva~~La~   97 (281)
T 2f6r_A           73 SGLYVLGLTGISGSGKSSVAQRLKN   97 (281)
T ss_dssp             TTCEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            3467899999999999999998873

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=96.36  E-value=0.0021  Score=46.00  Aligned_cols=21  Identities=19%  Similarity=0.146  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhh
Q 028300           16 KILLIGDSGVGKSSLLVSFIS   36 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~   36 (211)
                      -++++|++|+|||||+..+..
T Consensus        22 ~~~i~G~~GsGKTtl~~~l~~   42 (220)
T 2cvh_A           22 LTQVYGPYASGKTTLALQTGL   42 (220)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            579999999999999999987

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=96.36  E-value=0.0021  Score=49.73  Aligned_cols=23  Identities=39%  Similarity=0.551  Sum_probs=21.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCC
Q 028300           16 KILLIGDSGVGKSSLLVSFISSS   38 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~~   38 (211)
                      +++++|+.|+|||||++.+.+..
T Consensus        73 ~~gIiG~nGaGKTTLl~~I~g~~   95 (347)
T 2obl_A           73 RIGIFAGSGVGKSTLLGMICNGA   95 (347)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            78999999999999999998774

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=96.35  E-value=0.0024  Score=48.17  Aligned_cols=22  Identities=45%  Similarity=0.555  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhh
Q 028300           15 FKILLIGDSGVGKSSLLVSFIS   36 (211)
Q Consensus        15 ~~I~v~G~~~~GKssli~~l~~   36 (211)
                      ..|++.|++||||||+.+.|..
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~   24 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIA   24 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999875

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=96.35  E-value=0.0023  Score=46.27  Aligned_cols=24  Identities=21%  Similarity=0.266  Sum_probs=20.8

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhhC
Q 028300           14 SFKILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        14 ~~~I~v~G~~~~GKssli~~l~~~   37 (211)
                      .-.+++.|++|+|||+|++.+...
T Consensus        52 ~~~~ll~G~~G~GKT~la~~l~~~   75 (242)
T 3bos_A           52 VQAIYLWGPVKSGRTHLIHAACAR   75 (242)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH
Confidence            457899999999999999988754

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=96.34  E-value=0.0025  Score=45.13  Aligned_cols=23  Identities=35%  Similarity=0.499  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhhC
Q 028300           15 FKILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        15 ~~I~v~G~~~~GKssli~~l~~~   37 (211)
                      -.|++.|++|+|||+|+..+...
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~   77 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANE   77 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            57899999999999999988754

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=96.34  E-value=0.0022  Score=46.64  Aligned_cols=22  Identities=14%  Similarity=0.271  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q 028300           16 KILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~   37 (211)
                      -++++|++|+|||||+..+...
T Consensus        26 ~~~i~G~~GsGKTtl~~~l~~~   47 (243)
T 1n0w_A           26 ITEMFGEFRTGKTQICHTLAVT   47 (243)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHH
Confidence            5789999999999999999874

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=96.34  E-value=0.0019  Score=45.99  Aligned_cols=23  Identities=30%  Similarity=0.385  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhhC
Q 028300           15 FKILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        15 ~~I~v~G~~~~GKssli~~l~~~   37 (211)
                      -.+++.|+||+|||+++..+...
T Consensus        59 n~ili~GPPGtGKTt~a~ala~~   81 (212)
T 1tue_A           59 NCLVFCGPANTGKSYFGMSFIHF   81 (212)
T ss_dssp             SEEEEESCGGGCHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            35999999999999998888753

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=96.34  E-value=0.0032  Score=45.75  Aligned_cols=25  Identities=24%  Similarity=0.368  Sum_probs=21.7

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhhC
Q 028300           13 LSFKILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        13 ~~~~I~v~G~~~~GKssli~~l~~~   37 (211)
                      ....|+|.|++||||||+++.|...
T Consensus        25 ~g~~i~i~G~~GsGKsT~~~~l~~~   49 (229)
T 4eaq_A           25 MSAFITFEGPEGSGKTTVINEVYHR   49 (229)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence            4567999999999999999998754

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=96.33  E-value=0.0022  Score=45.82  Aligned_cols=23  Identities=39%  Similarity=0.472  Sum_probs=20.1

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhh
Q 028300           14 SFKILLIGDSGVGKSSLLVSFIS   36 (211)
Q Consensus        14 ~~~I~v~G~~~~GKssli~~l~~   36 (211)
                      ...|++.|.+||||||+.+.|..
T Consensus        25 ~~~i~~~G~~GsGKsT~~~~l~~   47 (211)
T 1m7g_A           25 GLTIWLTGLSASGKSTLAVELEH   47 (211)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            45789999999999999998865

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=96.32  E-value=0.0017  Score=52.18  Aligned_cols=23  Identities=30%  Similarity=0.560  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCC
Q 028300           16 KILLIGDSGVGKSSLLVSFISSS   38 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~~   38 (211)
                      +++|+|+.|||||||++.+.+-.
T Consensus       140 ~v~IvGpnGsGKSTLlr~L~Gl~  162 (460)
T 2npi_A          140 RVVIVGGSQTGKTSLSRTLCSYA  162 (460)
T ss_dssp             CEEEEESTTSSHHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhCcc
Confidence            68999999999999999988653

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=96.31  E-value=0.0029  Score=51.14  Aligned_cols=28  Identities=29%  Similarity=0.472  Sum_probs=22.6

Q ss_pred             CCCceeeEEEEEcCCCCcHHHHHHHHhh
Q 028300            9 NSYDLSFKILLIGDSGVGKSSLLVSFIS   36 (211)
Q Consensus         9 ~~~~~~~~I~v~G~~~~GKssli~~l~~   36 (211)
                      ......-.|+|+|+.|||||||++.|.+
T Consensus       288 l~i~~GeVI~LVGpNGSGKTTLl~~LAg  315 (503)
T 2yhs_A          288 VEGKAPFVILMVGVNGVGKTTTIGKLAR  315 (503)
T ss_dssp             CCSCTTEEEEEECCTTSSHHHHHHHHHH
T ss_pred             eeccCCeEEEEECCCcccHHHHHHHHHH
Confidence            3344556799999999999999998864

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=96.30  E-value=0.0021  Score=47.45  Aligned_cols=22  Identities=23%  Similarity=0.329  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhh
Q 028300           15 FKILLIGDSGVGKSSLLVSFIS   36 (211)
Q Consensus        15 ~~I~v~G~~~~GKssli~~l~~   36 (211)
                      -.|+++|++|+||||+.+.|..
T Consensus        49 ~~i~l~G~~GsGKSTl~~~La~   70 (250)
T 3nwj_A           49 RSMYLVGMMGSGKTTVGKIMAR   70 (250)
T ss_dssp             CCEEEECSTTSCHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4699999999999999998864

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=96.29  E-value=0.0033  Score=44.38  Aligned_cols=25  Identities=24%  Similarity=0.288  Sum_probs=21.9

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhhC
Q 028300           13 LSFKILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        13 ~~~~I~v~G~~~~GKssli~~l~~~   37 (211)
                      ....|++.|.+||||||+.+.|...
T Consensus        11 ~~~iIgltG~~GSGKSTva~~L~~~   35 (192)
T 2grj_A           11 HHMVIGVTGKIGTGKSTVCEILKNK   35 (192)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             cceEEEEECCCCCCHHHHHHHHHHh
Confidence            4678999999999999999988754

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=96.27  E-value=0.0025  Score=44.25  Aligned_cols=21  Identities=24%  Similarity=0.384  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhh
Q 028300           16 KILLIGDSGVGKSSLLVSFIS   36 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~   36 (211)
                      -.+|+|+.|+|||||+..+..
T Consensus        28 ~~~i~G~NGsGKStll~ai~~   48 (182)
T 3kta_A           28 FTAIVGANGSGKSNIGDAILF   48 (182)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            468999999999999999864

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=96.25  E-value=0.0018  Score=47.95  Aligned_cols=26  Identities=23%  Similarity=0.217  Sum_probs=21.9

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhhC
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~~~   37 (211)
                      .+...|+|.|.+||||||+++.|...
T Consensus        22 ~~~~~I~ieG~~GsGKST~~~~L~~~   47 (263)
T 1p5z_B           22 TRIKKISIEGNIAAGKSTFVNILKQL   47 (263)
T ss_dssp             -CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHHh
Confidence            45578999999999999999988754

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=96.24  E-value=0.0017  Score=49.61  Aligned_cols=23  Identities=35%  Similarity=0.515  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCC
Q 028300           16 KILLIGDSGVGKSSLLVSFISSS   38 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~~   38 (211)
                      -++|+|+.|||||||++.+.+..
T Consensus         6 v~~i~G~~GaGKTTll~~l~~~~   28 (318)
T 1nij_A            6 VTLLTGFLGAGKTTLLRHILNEQ   28 (318)
T ss_dssp             EEEEEESSSSSCHHHHHHHHHSC
T ss_pred             EEEEEecCCCCHHHHHHHHHhhc
Confidence            46889999999999999999653

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=96.22  E-value=0.0032  Score=47.52  Aligned_cols=26  Identities=19%  Similarity=0.220  Sum_probs=21.6

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhhC
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~~~   37 (211)
                      ..+..+++.|+||+|||+|++.+...
T Consensus        34 ~~p~~lLl~GppGtGKT~la~aiA~~   59 (293)
T 3t15_A           34 KVPLILGIWGGKGQGKSFQCELVFRK   59 (293)
T ss_dssp             CCCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            34557788899999999999999864

>3uc9_A Increased recombination centers protein 6; rossmann-fold, clathrin accessory factor; 1.80A {Saccharomyces cerevisiae}

Probab=96.21  E-value=0.0049  Score=44.49  Aligned_cols=23  Identities=26%  Similarity=0.358  Sum_probs=19.4

Q ss_pred             EEEEE--cCCCCcHHHHHHHHhhCC
Q 028300           16 KILLI--GDSGVGKSSLLVSFISSS   38 (211)
Q Consensus        16 ~I~v~--G~~~~GKssli~~l~~~~   38 (211)
                      ||+|+  |+++.|||.|++++++..
T Consensus        29 kilvl~~~~~~~~~~~~~~~lf~~~   53 (233)
T 3uc9_A           29 KILVLSDHPHNFLKTQFLQDLFHCS   53 (233)
T ss_dssp             EEEEEEEGGGHHHHHHHHHHHHCCC
T ss_pred             ceEEEecCcccccHHHHHHHHhccc
Confidence            55555  999999999999999874

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=96.18  E-value=0.0028  Score=49.59  Aligned_cols=24  Identities=21%  Similarity=0.277  Sum_probs=20.9

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhh
Q 028300           13 LSFKILLIGDSGVGKSSLLVSFIS   36 (211)
Q Consensus        13 ~~~~I~v~G~~~~GKssli~~l~~   36 (211)
                      ..-.|+++|++|+|||||++.+.+
T Consensus       168 ~~~~i~l~G~~GsGKSTl~~~l~~  191 (377)
T 1svm_A          168 KKRYWLFKGPIDSGKTTLAAALLE  191 (377)
T ss_dssp             TCCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHh
Confidence            344789999999999999999885

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=96.17  E-value=0.0035  Score=45.51  Aligned_cols=23  Identities=22%  Similarity=0.478  Sum_probs=20.0

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhh
Q 028300           14 SFKILLIGDSGVGKSSLLVSFIS   36 (211)
Q Consensus        14 ~~~I~v~G~~~~GKssli~~l~~   36 (211)
                      ..+++|+|+|||||||+...|..
T Consensus         8 ~~~~~~~G~pGsGKsT~a~~L~~   30 (230)
T 3gmt_A            8 HMRLILLGAPGAGKGTQANFIKE   30 (230)
T ss_dssp             -CEEEEECCTTSCHHHHHHHHHH
T ss_pred             ccceeeECCCCCCHHHHHHHHHH
Confidence            46899999999999999998863

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=96.14  E-value=0.0036  Score=45.60  Aligned_cols=27  Identities=19%  Similarity=0.204  Sum_probs=22.0

Q ss_pred             CCceeeEEEEEcCCCCcHHHHHHHHhh
Q 028300           10 SYDLSFKILLIGDSGVGKSSLLVSFIS   36 (211)
Q Consensus        10 ~~~~~~~I~v~G~~~~GKssli~~l~~   36 (211)
                      .+.....|+++|++||||||+.+.|..
T Consensus        12 ~~~~~~~i~i~G~~gsGKst~~~~l~~   38 (236)
T 1q3t_A           12 DKMKTIQIAIDGPASSGKSTVAKIIAK   38 (236)
T ss_dssp             --CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred             cccCCcEEEEECCCCCCHHHHHHHHHH
Confidence            445567899999999999999998874

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=96.12  E-value=0.0072  Score=45.89  Aligned_cols=25  Identities=24%  Similarity=0.485  Sum_probs=20.9

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhh
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFIS   36 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~~   36 (211)
                      ...-.|+++|++|+||||++..+..
T Consensus       102 ~~~~vi~ivG~~GsGKTTl~~~LA~  126 (306)
T 1vma_A          102 EPPFVIMVVGVNGTGKTTSCGKLAK  126 (306)
T ss_dssp             SSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEEcCCCChHHHHHHHHHH
Confidence            3445789999999999999998863

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=96.08  E-value=0.0036  Score=41.89  Aligned_cols=25  Identities=16%  Similarity=0.236  Sum_probs=21.3

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhhCC
Q 028300           14 SFKILLIGDSGVGKSSLLVSFISSS   38 (211)
Q Consensus        14 ~~~I~v~G~~~~GKssli~~l~~~~   38 (211)
                      ...|.+.|++|+|||++.+.+....
T Consensus        24 ~~~vll~G~~GtGKt~lA~~i~~~~   48 (145)
T 3n70_A           24 DIAVWLYGAPGTGRMTGARYLHQFG   48 (145)
T ss_dssp             CSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHhC
Confidence            3468999999999999999987653

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=96.08  E-value=0.0036  Score=50.06  Aligned_cols=23  Identities=39%  Similarity=0.481  Sum_probs=21.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCC
Q 028300           16 KILLIGDSGVGKSSLLVSFISSS   38 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~~   38 (211)
                      +++++|++|+|||||++.+.+..
T Consensus       159 ~~~IvG~sGsGKSTLl~~Iag~~  181 (438)
T 2dpy_A          159 RMGLFAGSGVGKSVLLGMMARYT  181 (438)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhccc
Confidence            78999999999999999998764

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=96.07  E-value=0.0051  Score=48.85  Aligned_cols=26  Identities=23%  Similarity=0.360  Sum_probs=21.9

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhhC
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~~~   37 (211)
                      ....-|+++|++||||||+.+.|...
T Consensus       256 ~~~~lIil~G~pGSGKSTla~~L~~~  281 (416)
T 3zvl_A          256 PNPEVVVAVGFPGAGKSTFIQEHLVS  281 (416)
T ss_dssp             SSCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHh
Confidence            34567899999999999999998753

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=96.06  E-value=0.0038  Score=46.64  Aligned_cols=25  Identities=32%  Similarity=0.405  Sum_probs=21.4

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhhC
Q 028300           13 LSFKILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        13 ~~~~I~v~G~~~~GKssli~~l~~~   37 (211)
                      ..-.+++.|++|+|||+|++.+...
T Consensus        50 ~~~~~ll~G~~GtGKT~la~~la~~   74 (285)
T 3h4m_A           50 PPKGILLYGPPGTGKTLLAKAVATE   74 (285)
T ss_dssp             CCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHH
Confidence            3446999999999999999999764

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=96.06  E-value=0.0036  Score=42.22  Aligned_cols=19  Identities=53%  Similarity=0.810  Sum_probs=17.1

Q ss_pred             EEEEcCCCCcHHHHHHHHh
Q 028300           17 ILLIGDSGVGKSSLLVSFI   35 (211)
Q Consensus        17 I~v~G~~~~GKssli~~l~   35 (211)
                      .+|+|+.|+|||||+..+.
T Consensus        26 ~~I~G~NGsGKStil~Ai~   44 (149)
T 1f2t_A           26 NLIIGQNGSGKSSLLDAIL   44 (149)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            4789999999999999875

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=96.06  E-value=0.0037  Score=46.02  Aligned_cols=25  Identities=28%  Similarity=0.442  Sum_probs=21.3

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhhC
Q 028300           13 LSFKILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        13 ~~~~I~v~G~~~~GKssli~~l~~~   37 (211)
                      ..-.|++.|++|+|||++++.+...
T Consensus        38 ~~~~vll~G~~GtGKT~la~~la~~   62 (262)
T 2qz4_A           38 VPKGALLLGPPGCGKTLLAKAVATE   62 (262)
T ss_dssp             CCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHH
Confidence            3456899999999999999998763

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=96.06  E-value=0.0039  Score=46.95  Aligned_cols=24  Identities=29%  Similarity=0.436  Sum_probs=21.3

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhhC
Q 028300           14 SFKILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        14 ~~~I~v~G~~~~GKssli~~l~~~   37 (211)
                      .-.|++.|++|+|||+|++.+...
T Consensus        54 ~~~vll~Gp~GtGKT~la~~la~~   77 (297)
T 3b9p_A           54 AKGLLLFGPPGNGKTLLARAVATE   77 (297)
T ss_dssp             CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHH
Confidence            457899999999999999999864

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=96.06  E-value=0.0037  Score=51.31  Aligned_cols=23  Identities=22%  Similarity=0.387  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCC
Q 028300           16 KILLIGDSGVGKSSLLVSFISSS   38 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~~   38 (211)
                      .++++|+.|+|||||++.+.+..
T Consensus        49 ~~~LvG~NGaGKSTLlk~l~Gl~   71 (538)
T 1yqt_A           49 VVGIVGPNGTGKSTAVKILAGQL   71 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            68999999999999999998754

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=96.05  E-value=0.0037  Score=45.03  Aligned_cols=22  Identities=32%  Similarity=0.489  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q 028300           16 KILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~   37 (211)
                      .++|.|++|+|||+|++.+...
T Consensus        47 ~~ll~G~~G~GKT~l~~~~~~~   68 (250)
T 1njg_A           47 AYLFSGTRGVGKTSIARLLAKG   68 (250)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999988743

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=96.04  E-value=0.0035  Score=50.56  Aligned_cols=22  Identities=32%  Similarity=0.637  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhh
Q 028300           15 FKILLIGDSGVGKSSLLVSFIS   36 (211)
Q Consensus        15 ~~I~v~G~~~~GKssli~~l~~   36 (211)
                      =.++|+|+.|+|||||++.+.+
T Consensus        30 e~~~liG~nGsGKSTLl~~l~G   51 (483)
T 3euj_A           30 LVTTLSGGNGAGKSTTMAGFVT   51 (483)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCcHHHHHHHHhc
Confidence            3679999999999999998873

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=96.04  E-value=0.0035  Score=46.83  Aligned_cols=21  Identities=29%  Similarity=0.385  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhh
Q 028300           16 KILLIGDSGVGKSSLLVSFIS   36 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~   36 (211)
                      -++|+|++|+|||||+..+..
T Consensus        32 i~~i~G~~GsGKTtl~~~l~~   52 (279)
T 1nlf_A           32 VGALVSPGGAGKSMLALQLAA   52 (279)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            578999999999999999875

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=96.04  E-value=0.0038  Score=44.36  Aligned_cols=21  Identities=24%  Similarity=0.564  Sum_probs=19.1

Q ss_pred             EEEEcCCCCcHHHHHHHHhhC
Q 028300           17 ILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        17 I~v~G~~~~GKssli~~l~~~   37 (211)
                      +++.|++|+|||+|++.+...
T Consensus        41 ~ll~G~~G~GKT~l~~~l~~~   61 (226)
T 2chg_A           41 LLFSGPPGTGKTATAIALARD   61 (226)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            899999999999999988753

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=96.01  E-value=0.0046  Score=43.81  Aligned_cols=21  Identities=29%  Similarity=0.308  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhh
Q 028300           16 KILLIGDSGVGKSSLLVSFIS   36 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~   36 (211)
                      .|+|.|++||||||+.+.|..
T Consensus         4 ~i~i~G~~GsGKst~~~~la~   24 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAA   24 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            699999999999999998864

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=95.98  E-value=0.0039  Score=47.18  Aligned_cols=24  Identities=29%  Similarity=0.443  Sum_probs=21.0

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhhC
Q 028300           14 SFKILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        14 ~~~I~v~G~~~~GKssli~~l~~~   37 (211)
                      .-.|++.|++|+|||+|++.+...
T Consensus        49 ~~~vLL~Gp~GtGKT~la~ala~~   72 (301)
T 3cf0_A           49 SKGVLFYGPPGCGKTLLAKAIANE   72 (301)
T ss_dssp             CSEEEEECSSSSSHHHHHHHHHHH
T ss_pred             CceEEEECCCCcCHHHHHHHHHHH
Confidence            346899999999999999999864

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=95.96  E-value=0.0037  Score=51.28  Aligned_cols=23  Identities=26%  Similarity=0.494  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCC
Q 028300           16 KILLIGDSGVGKSSLLVSFISSS   38 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~~   38 (211)
                      .++++|+.|+|||||++.+.+..
T Consensus        27 i~gLiGpNGaGKSTLlkiL~Gl~   49 (538)
T 3ozx_A           27 ILGVLGKNGVGKTTVLKILAGEI   49 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Confidence            57999999999999999988754

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=95.95  E-value=0.004  Score=51.69  Aligned_cols=22  Identities=32%  Similarity=0.495  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q 028300           16 KILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~   37 (211)
                      .++++|+.|+|||||++.+.+-
T Consensus       371 ~~~ivG~sGsGKSTLl~~l~g~  392 (582)
T 3b60_A          371 TVALVGRSGSGKSTIASLITRF  392 (582)
T ss_dssp             EEEEEECTTSSHHHHHHHHTTT
T ss_pred             EEEEECCCCCCHHHHHHHHhhc
Confidence            6899999999999999988865

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=95.93  E-value=0.0042  Score=47.43  Aligned_cols=23  Identities=30%  Similarity=0.437  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhhC
Q 028300           15 FKILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        15 ~~I~v~G~~~~GKssli~~l~~~   37 (211)
                      -.+++.|++|+|||+|++.+.+.
T Consensus        38 ~~lll~G~~GtGKT~la~~i~~~   60 (324)
T 1l8q_A           38 NPIFIYGSVGTGKTHLLQAAGNE   60 (324)
T ss_dssp             SSEEEECSSSSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHH
Confidence            35899999999999999998764

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=95.92  E-value=0.0048  Score=46.68  Aligned_cols=133  Identities=17%  Similarity=0.177  Sum_probs=68.3

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhhCCC------------CCCCCcc-----------ceeeEEEE----E--EE-CCEEEE
Q 028300           14 SFKILLIGDSGVGKSSLLVSFISSSV------------DDLSPTI-----------GVDFKIKL----L--TV-AGKRLK   63 (211)
Q Consensus        14 ~~~I~v~G~~~~GKssli~~l~~~~~------------~~~~~~~-----------~~~~~~~~----~--~~-~~~~~~   63 (211)
                      .-.|+++|++|+||||++..|...-.            +...+..           +.......    .  .+ .-....
T Consensus       105 g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~~~~d  184 (296)
T 2px0_A          105 SKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELFSEYD  184 (296)
T ss_dssp             SSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHGGGSS
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHhcCCC
Confidence            34789999999999999998862210            0110000           00000000    0  00 002346


Q ss_pred             EEEEeCCChhhhcc--c--hhhhcc--CCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcc
Q 028300           64 LTIWDTAGQERFRT--L--TSSYYR--GAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERV  137 (211)
Q Consensus        64 ~~l~D~~g~~~~~~--~--~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~  137 (211)
                      +.|+||+|......  +  ....+.  ..+..++|+|++..  ...+.. +...+.    ..+ ..-+|+||.|..... 
T Consensus       185 lvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~--~~~~~~-~~~~~~----~l~-~~giVltk~D~~~~~-  255 (296)
T 2px0_A          185 HVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAK--YEDMKH-IVKRFS----SVP-VNQYIFTKIDETTSL-  255 (296)
T ss_dssp             EEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBC--HHHHHH-HTTTTS----SSC-CCEEEEECTTTCSCC-
T ss_pred             EEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCC--HHHHHH-HHHHHh----cCC-CCEEEEeCCCcccch-
Confidence            88999999654321  1  112232  36788999987753  223332 222222    112 235677999975321 


Q ss_pred             cCHHHHHHHHHHcCCeEEEee
Q 028300          138 VSREEGIALAKEHGSLFLECS  158 (211)
Q Consensus       138 v~~~~~~~~~~~~~~~~~~~S  158 (211)
                         ..+.......+.|+..+.
T Consensus       256 ---g~~~~~~~~~~~pi~~i~  273 (296)
T 2px0_A          256 ---GSVFNILAESKIGVGFMT  273 (296)
T ss_dssp             ---HHHHHHHHTCSCCCSEEC
T ss_pred             ---hHHHHHHHHHCcCEEEEE
Confidence               244556667777765543

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=95.91  E-value=0.0043  Score=51.66  Aligned_cols=23  Identities=30%  Similarity=0.518  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCC
Q 028300           16 KILLIGDSGVGKSSLLVSFISSS   38 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~~   38 (211)
                      .++++|+.|+|||||++.+.+..
T Consensus       105 i~~LvGpNGaGKSTLLkiL~Gll  127 (608)
T 3j16_B          105 VLGLVGTNGIGKSTALKILAGKQ  127 (608)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHhcCC
Confidence            58999999999999999988754

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=95.87  E-value=0.0048  Score=44.90  Aligned_cols=21  Identities=33%  Similarity=0.570  Sum_probs=18.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhh
Q 028300           16 KILLIGDSGVGKSSLLVSFIS   36 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~   36 (211)
                      -++++|++|+|||||+.+++.
T Consensus        25 ~~~i~G~~GsGKTtl~~~~~~   45 (247)
T 2dr3_A           25 VVLLSGGPGTGKTIFSQQFLW   45 (247)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            578999999999999887764

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=95.86  E-value=0.0062  Score=46.03  Aligned_cols=24  Identities=17%  Similarity=0.499  Sum_probs=20.1

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhh
Q 028300           13 LSFKILLIGDSGVGKSSLLVSFIS   36 (211)
Q Consensus        13 ~~~~I~v~G~~~~GKssli~~l~~   36 (211)
                      ....|++.|++|+|||++++.+..
T Consensus        66 ~~~~vll~G~~GtGKT~la~~la~   89 (309)
T 3syl_A           66 PTLHMSFTGNPGTGKTTVALKMAG   89 (309)
T ss_dssp             CCCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHH
Confidence            345799999999999999987654

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=95.86  E-value=0.0046  Score=51.27  Aligned_cols=23  Identities=35%  Similarity=0.515  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCC
Q 028300           16 KILLIGDSGVGKSSLLVSFISSS   38 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~~   38 (211)
                      .++++|+.|+|||||++.+.+-.
T Consensus       371 ~~~ivG~sGsGKSTll~~l~g~~  393 (582)
T 3b5x_A          371 TVALVGRSGSGKSTIANLFTRFY  393 (582)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            78999999999999999988653

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=95.85  E-value=0.0074  Score=44.83  Aligned_cols=26  Identities=23%  Similarity=0.311  Sum_probs=22.4

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhhC
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~~~   37 (211)
                      .....+++.|++|+|||+|++.+...
T Consensus        62 ~~~~~vLl~G~~GtGKT~la~~ia~~   87 (272)
T 1d2n_A           62 TPLVSVLLEGPPHSGKTALAAKIAEE   87 (272)
T ss_dssp             CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence            44568999999999999999998864

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=95.81  E-value=0.0051  Score=51.21  Aligned_cols=23  Identities=17%  Similarity=0.377  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCC
Q 028300           16 KILLIGDSGVGKSSLLVSFISSS   38 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~~   38 (211)
                      .++++|+.|+|||||++.+.+..
T Consensus       119 ~~~LiG~NGsGKSTLlkiL~Gll  141 (607)
T 3bk7_A          119 VVGIVGPNGTGKTTAVKILAGQL  141 (607)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCChHHHHHHHHhCCC
Confidence            68999999999999999988754

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=95.80  E-value=0.0056  Score=50.26  Aligned_cols=23  Identities=22%  Similarity=0.502  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCC
Q 028300           16 KILLIGDSGVGKSSLLVSFISSS   38 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~~   38 (211)
                      .++|+|+.|+|||||++.+.+..
T Consensus       314 ~~~i~G~NGsGKSTLlk~l~Gl~  336 (538)
T 1yqt_A          314 VIGIVGPNGIGKTTFVKMLAGVE  336 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57999999999999999998754

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=95.80  E-value=0.0052  Score=43.52  Aligned_cols=24  Identities=38%  Similarity=0.707  Sum_probs=21.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhhCC
Q 028300           15 FKILLIGDSGVGKSSLLVSFISSS   38 (211)
Q Consensus        15 ~~I~v~G~~~~GKssli~~l~~~~   38 (211)
                      ..|+|+|++|+|||+|...|...-
T Consensus        35 ~~ilI~GpsGsGKStLA~~La~~g   58 (205)
T 2qmh_A           35 LGVLITGDSGVGKSETALELVQRG   58 (205)
T ss_dssp             EEEEEECCCTTTTHHHHHHHHTTT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhC
Confidence            468999999999999999998653

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=95.78  E-value=0.0058  Score=50.92  Aligned_cols=23  Identities=22%  Similarity=0.502  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCC
Q 028300           16 KILLIGDSGVGKSSLLVSFISSS   38 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~~   38 (211)
                      .++++|+.|+|||||++.+.+..
T Consensus       384 i~~i~G~NGsGKSTLlk~l~Gl~  406 (607)
T 3bk7_A          384 VIGIVGPNGIGKTTFVKMLAGVE  406 (607)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            57999999999999999998754

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=95.78  E-value=0.0053  Score=47.58  Aligned_cols=23  Identities=22%  Similarity=0.287  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhhC
Q 028300           15 FKILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        15 ~~I~v~G~~~~GKssli~~l~~~   37 (211)
                      --+.|+|++|+|||||+..++..
T Consensus       132 ~i~~I~G~~GsGKTTL~~~l~~~  154 (349)
T 1pzn_A          132 AITEVFGEFGSGKTQLAHTLAVM  154 (349)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            36789999999999999999875

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=95.75  E-value=0.0057  Score=50.20  Aligned_cols=23  Identities=22%  Similarity=0.483  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCC
Q 028300           16 KILLIGDSGVGKSSLLVSFISSS   38 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~~   38 (211)
                      .++++|+.|+|||||++.+.+..
T Consensus       296 i~~i~G~nGsGKSTLl~~l~Gl~  318 (538)
T 3ozx_A          296 IIGILGPNGIGKTTFARILVGEI  318 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47999999999999999998754

>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A

Probab=95.75  E-value=0.0063  Score=42.40  Aligned_cols=21  Identities=33%  Similarity=0.474  Sum_probs=19.2

Q ss_pred             EEEEcCCCCcHHHHHHHHhhC
Q 028300           17 ILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        17 I~v~G~~~~GKssli~~l~~~   37 (211)
                      |.|+|.++||||+|..++...
T Consensus         2 ilV~Gg~~SGKS~~A~~la~~   22 (180)
T 1c9k_A            2 ILVTGGARSGKSRHAEALIGD   22 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCS
T ss_pred             EEEECCCCCcHHHHHHHHHhc
Confidence            789999999999999999854

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=95.73  E-value=0.0056  Score=47.53  Aligned_cols=24  Identities=25%  Similarity=0.468  Sum_probs=20.7

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhhC
Q 028300           14 SFKILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        14 ~~~I~v~G~~~~GKssli~~l~~~   37 (211)
                      .-.++|.|++|+|||+|++.+...
T Consensus        45 ~~~vli~G~~G~GKTtl~~~l~~~   68 (386)
T 2qby_A           45 PNNIFIYGLTGTGKTAVVKFVLSK   68 (386)
T ss_dssp             CCCEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH
Confidence            346899999999999999998864

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.72  E-value=0.0059  Score=48.56  Aligned_cols=25  Identities=32%  Similarity=0.462  Sum_probs=21.7

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhhC
Q 028300           13 LSFKILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        13 ~~~~I~v~G~~~~GKssli~~l~~~   37 (211)
                      .+-.|++.||||+|||+|++++.+.
T Consensus       205 ~prGiLL~GPPGtGKT~lakAiA~~  229 (428)
T 4b4t_K          205 PPRGVLLYGPPGTGKTMLVKAVANS  229 (428)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHH
Confidence            3446999999999999999999864

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=95.72  E-value=0.0061  Score=45.95  Aligned_cols=24  Identities=33%  Similarity=0.559  Sum_probs=20.8

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhhC
Q 028300           14 SFKILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        14 ~~~I~v~G~~~~GKssli~~l~~~   37 (211)
                      ...+++.|++|+|||++++.+...
T Consensus        50 ~~~vll~G~~GtGKT~la~~la~~   73 (310)
T 1ofh_A           50 PKNILMIGPTGVGKTEIARRLAKL   73 (310)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHH
Confidence            346899999999999999998754

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.70  E-value=0.0049  Score=47.54  Aligned_cols=20  Identities=30%  Similarity=0.649  Sum_probs=18.9

Q ss_pred             EEEEcCCCCcHHHHHHHHhh
Q 028300           17 ILLIGDSGVGKSSLLVSFIS   36 (211)
Q Consensus        17 I~v~G~~~~GKssli~~l~~   36 (211)
                      +++.|++|+||||+++.+.+
T Consensus        39 ~ll~Gp~G~GKTtl~~~la~   58 (354)
T 1sxj_E           39 LLLYGPNGTGKKTRCMALLE   58 (354)
T ss_dssp             EEEECSTTSSHHHHHHTHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            89999999999999998876

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.69  E-value=0.006  Score=46.93  Aligned_cols=21  Identities=33%  Similarity=0.662  Sum_probs=19.3

Q ss_pred             EEEEcCCCCcHHHHHHHHhhC
Q 028300           17 ILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        17 I~v~G~~~~GKssli~~l~~~   37 (211)
                      +++.|++|+||||+++.+.+.
T Consensus        49 ~ll~Gp~G~GKTtla~~la~~   69 (340)
T 1sxj_C           49 LLFYGPPGTGKTSTIVALARE   69 (340)
T ss_dssp             EEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            899999999999999998765

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.68  E-value=0.007  Score=48.20  Aligned_cols=26  Identities=23%  Similarity=0.303  Sum_probs=22.5

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhhC
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~~~   37 (211)
                      ..+-.|++.||||+|||+|++++.+.
T Consensus       213 ~~prGvLLyGPPGTGKTllAkAiA~e  238 (434)
T 4b4t_M          213 RAPKGALMYGPPGTGKTLLARACAAQ  238 (434)
T ss_dssp             CCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CCCCeeEEECcCCCCHHHHHHHHHHH
Confidence            34567999999999999999999865

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=95.67  E-value=0.0064  Score=46.77  Aligned_cols=22  Identities=27%  Similarity=0.601  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhh
Q 028300           15 FKILLIGDSGVGKSSLLVSFIS   36 (211)
Q Consensus        15 ~~I~v~G~~~~GKssli~~l~~   36 (211)
                      ..|+|.|++|||||||...|..
T Consensus         8 ~lI~I~GptgSGKTtla~~La~   29 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAK   29 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCcCcHHHHHHHHHH
Confidence            5799999999999999998874

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=95.67  E-value=0.0063  Score=46.55  Aligned_cols=24  Identities=38%  Similarity=0.440  Sum_probs=21.2

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhhC
Q 028300           14 SFKILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        14 ~~~I~v~G~~~~GKssli~~l~~~   37 (211)
                      .-.|++.|+||+|||+|++.+...
T Consensus        45 ~~~iLL~GppGtGKT~la~ala~~   68 (322)
T 1xwi_A           45 WRGILLFGPPGTGKSYLAKAVATE   68 (322)
T ss_dssp             CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred             CceEEEECCCCccHHHHHHHHHHH
Confidence            357999999999999999999864

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=95.67  E-value=0.0064  Score=47.40  Aligned_cols=22  Identities=32%  Similarity=0.481  Sum_probs=18.5

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHh
Q 028300           13 LSFKILLIGDSGVGKSSLLVSFI   35 (211)
Q Consensus        13 ~~~~I~v~G~~~~GKssli~~l~   35 (211)
                      ..+ .+|+|+.|+|||||++.++
T Consensus        23 ~g~-~~i~G~NGaGKTTll~ai~   44 (365)
T 3qf7_A           23 SGI-TVVEGPNGAGKSSLFEAIS   44 (365)
T ss_dssp             SEE-EEEECCTTSSHHHHHHHHH
T ss_pred             CCe-EEEECCCCCCHHHHHHHHH
Confidence            344 4589999999999999986

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=95.66  E-value=0.0046  Score=51.49  Aligned_cols=23  Identities=26%  Similarity=0.550  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCC
Q 028300           16 KILLIGDSGVGKSSLLVSFISSS   38 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~~   38 (211)
                      .++++|+.|+|||||++.+.+-.
T Consensus       383 ~~~ivG~sGsGKSTll~~l~g~~  405 (598)
T 3qf4_B          383 KVALVGPTGSGKTTIVNLLMRFY  405 (598)
T ss_dssp             EEEEECCTTSSTTHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCc
Confidence            78999999999999999887653

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=95.66  E-value=0.0086  Score=45.76  Aligned_cols=23  Identities=26%  Similarity=0.528  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhhC
Q 028300           15 FKILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        15 ~~I~v~G~~~~GKssli~~l~~~   37 (211)
                      ..|+|+|++|||||||...|...
T Consensus         6 ~~i~i~GptGsGKTtla~~La~~   28 (323)
T 3crm_A            6 PAIFLMGPTAAGKTDLAMALADA   28 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999998753

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=95.65  E-value=0.0072  Score=47.09  Aligned_cols=22  Identities=27%  Similarity=0.457  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q 028300           16 KILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~   37 (211)
                      .++|.|++|+|||+|++.+...
T Consensus        46 ~~li~G~~G~GKTtl~~~l~~~   67 (389)
T 1fnn_A           46 RATLLGRPGTGKTVTLRKLWEL   67 (389)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999998865

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=95.65  E-value=0.0039  Score=51.68  Aligned_cols=22  Identities=32%  Similarity=0.419  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q 028300           16 KILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~   37 (211)
                      .++++|+.|+|||||++.+.+-
T Consensus       369 ~~~ivG~sGsGKSTll~~l~g~  390 (578)
T 4a82_A          369 TVAFVGMSGGGKSTLINLIPRF  390 (578)
T ss_dssp             EEEEECSTTSSHHHHHTTTTTS
T ss_pred             EEEEECCCCChHHHHHHHHhcC
Confidence            7899999999999999977765

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=95.63  E-value=0.0073  Score=46.14  Aligned_cols=24  Identities=38%  Similarity=0.488  Sum_probs=21.3

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhhC
Q 028300           14 SFKILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        14 ~~~I~v~G~~~~GKssli~~l~~~   37 (211)
                      ...|++.|+||+|||+|++.+...
T Consensus        51 ~~~vLl~GppGtGKT~la~aia~~   74 (322)
T 3eie_A           51 TSGILLYGPPGTGKSYLAKAVATE   74 (322)
T ss_dssp             CCEEEEECSSSSCHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHH
Confidence            457999999999999999999764

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=95.61  E-value=0.0077  Score=45.51  Aligned_cols=23  Identities=30%  Similarity=0.580  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhhC
Q 028300           15 FKILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        15 ~~I~v~G~~~~GKssli~~l~~~   37 (211)
                      -.+++.|++|+|||++++.+...
T Consensus        48 ~~~ll~G~~GtGKt~la~~la~~   70 (311)
T 4fcw_A           48 GSFLFLGPTGVGKTELAKTLAAT   70 (311)
T ss_dssp             EEEEEESCSSSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHHH
Confidence            47899999999999999988764

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=95.60  E-value=0.0079  Score=45.74  Aligned_cols=24  Identities=38%  Similarity=0.578  Sum_probs=20.9

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhhC
Q 028300           14 SFKILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        14 ~~~I~v~G~~~~GKssli~~l~~~   37 (211)
                      .-.+++.|++|+|||+|+..+...
T Consensus       152 ~~~lll~G~~GtGKT~La~aia~~  175 (308)
T 2qgz_A          152 QKGLYLYGDMGIGKSYLLAAMAHE  175 (308)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHH
Confidence            457999999999999999988754

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=95.60  E-value=0.0086  Score=43.65  Aligned_cols=23  Identities=22%  Similarity=0.403  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhhC
Q 028300           15 FKILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        15 ~~I~v~G~~~~GKssli~~l~~~   37 (211)
                      ..|++.|..||||||+++.|...
T Consensus         3 ~~i~~~G~~g~GKtt~~~~l~~~   25 (241)
T 2ocp_A            3 RRLSIEGNIAVGKSTFVKLLTKT   25 (241)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHH
Confidence            56899999999999999998754

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.58  E-value=0.0072  Score=48.17  Aligned_cols=26  Identities=27%  Similarity=0.396  Sum_probs=22.4

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhhC
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~~~   37 (211)
                      ..+-.|++.||||+|||+|++++.+.
T Consensus       213 ~~prGvLL~GPPGtGKTllAkAiA~e  238 (437)
T 4b4t_L          213 KPPKGVLLYGPPGTGKTLLAKAVAAT  238 (437)
T ss_dssp             CCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCcHHHHHHHHHHH
Confidence            34558999999999999999999865

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=95.57  E-value=0.0077  Score=50.15  Aligned_cols=23  Identities=22%  Similarity=0.600  Sum_probs=20.5

Q ss_pred             EEEEcCCCCcHHHHHHHHhhCCC
Q 028300           17 ILLIGDSGVGKSSLLVSFISSSV   39 (211)
Q Consensus        17 I~v~G~~~~GKssli~~l~~~~~   39 (211)
                      ++++|+.|+|||||++.+.+...
T Consensus       381 v~iiG~NGsGKSTLlk~l~Gl~~  403 (608)
T 3j16_B          381 LVMMGENGTGKTTLIKLLAGALK  403 (608)
T ss_dssp             EEEESCTTSSHHHHHHHHHTSSC
T ss_pred             EEEECCCCCcHHHHHHHHhcCCC
Confidence            79999999999999999987643

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=95.56  E-value=0.0053  Score=51.01  Aligned_cols=22  Identities=27%  Similarity=0.499  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q 028300           16 KILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~   37 (211)
                      .++++|+.|+|||||++.+.+-
T Consensus       371 ~~~ivG~sGsGKSTll~~l~g~  392 (587)
T 3qf4_A          371 LVAVLGETGSGKSTLMNLIPRL  392 (587)
T ss_dssp             EEEEECSSSSSHHHHHHTTTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            7899999999999999988754

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=95.52  E-value=0.0098  Score=46.00  Aligned_cols=22  Identities=27%  Similarity=0.569  Sum_probs=19.3

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHh
Q 028300           14 SFKILLIGDSGVGKSSLLVSFI   35 (211)
Q Consensus        14 ~~~I~v~G~~~~GKssli~~l~   35 (211)
                      ..+|+++|++|+||||+.+.|.
T Consensus        24 ~~~i~l~G~~G~GKTTl~~~la   45 (359)
T 2ga8_A           24 RVCVILVGSPGSGKSTIAEELC   45 (359)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHH
T ss_pred             eeEEEEECCCCCcHHHHHHHHH
Confidence            3579999999999999998765

>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}

Probab=95.51  E-value=0.007  Score=46.20  Aligned_cols=25  Identities=8%  Similarity=0.052  Sum_probs=21.6

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhhC
Q 028300           13 LSFKILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        13 ~~~~I~v~G~~~~GKssli~~l~~~   37 (211)
                      ..-.+.+.|+||+|||++++.++..
T Consensus        44 ~~~~lli~GpPGTGKT~~v~~v~~~   68 (318)
T 3te6_A           44 QNKLFYITNADDSTKFQLVNDVMDE   68 (318)
T ss_dssp             CCCEEEEECCCSHHHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHH
Confidence            4567899999999999999998754

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=95.48  E-value=0.0075  Score=43.16  Aligned_cols=23  Identities=30%  Similarity=0.410  Sum_probs=20.2

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhh
Q 028300           14 SFKILLIGDSGVGKSSLLVSFIS   36 (211)
Q Consensus        14 ~~~I~v~G~~~~GKssli~~l~~   36 (211)
                      ...|++.|++||||||+.+.|..
T Consensus         3 ~~~i~i~G~~gsGkst~~~~l~~   25 (219)
T 2h92_A            3 AINIALDGPAAAGKSTIAKRVAS   25 (219)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999998865

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=95.47  E-value=0.0036  Score=47.19  Aligned_cols=23  Identities=30%  Similarity=0.378  Sum_probs=17.1

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhh
Q 028300           14 SFKILLIGDSGVGKSSLLVSFIS   36 (211)
Q Consensus        14 ~~~I~v~G~~~~GKssli~~l~~   36 (211)
                      .+.|+|.|++||||||+.+.|..
T Consensus         5 ~~iIgItG~sGSGKSTva~~L~~   27 (290)
T 1a7j_A            5 HPIISVTGSSGAGTSTVKHTFDQ   27 (290)
T ss_dssp             SCEEEEESCC---CCTHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            45699999999999999998864

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=95.47  E-value=0.009  Score=42.85  Aligned_cols=23  Identities=26%  Similarity=0.290  Sum_probs=20.0

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhh
Q 028300           14 SFKILLIGDSGVGKSSLLVSFIS   36 (211)
Q Consensus        14 ~~~I~v~G~~~~GKssli~~l~~   36 (211)
                      ..-|+|.|++||||||+++.|..
T Consensus         6 g~~i~~eG~~gsGKsT~~~~l~~   28 (213)
T 4edh_A            6 GLFVTLEGPEGAGKSTNRDYLAE   28 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHH
Confidence            45689999999999999998864

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.47  E-value=0.0083  Score=47.21  Aligned_cols=25  Identities=24%  Similarity=0.355  Sum_probs=21.7

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhhC
Q 028300           13 LSFKILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        13 ~~~~I~v~G~~~~GKssli~~l~~~   37 (211)
                      .+-.|++.||||+|||+|++++.+.
T Consensus       181 ~prGvLL~GPPGTGKTllAkAiA~e  205 (405)
T 4b4t_J          181 QPKGVILYGPPGTGKTLLARAVAHH  205 (405)
T ss_dssp             CCCCEEEESCSSSSHHHHHHHHHHH
T ss_pred             CCCceEEeCCCCCCHHHHHHHHHHh
Confidence            3457999999999999999999864

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.45  E-value=0.0084  Score=46.10  Aligned_cols=21  Identities=29%  Similarity=0.640  Sum_probs=19.2

Q ss_pred             EEEEcCCCCcHHHHHHHHhhC
Q 028300           17 ILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        17 I~v~G~~~~GKssli~~l~~~   37 (211)
                      +++.|++|+|||++++.+...
T Consensus        61 ~ll~G~~G~GKT~la~~la~~   81 (353)
T 1sxj_D           61 MLFYGPPGTGKTSTILALTKE   81 (353)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            899999999999999988754

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=95.45  E-value=0.012  Score=44.81  Aligned_cols=23  Identities=22%  Similarity=0.361  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhhC
Q 028300           15 FKILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        15 ~~I~v~G~~~~GKssli~~l~~~   37 (211)
                      .-|+|+||+|||||+|...|...
T Consensus         4 ~~i~i~GptgsGKt~la~~La~~   26 (322)
T 3exa_A            4 KLVAIVGPTAVGKTKTSVMLAKR   26 (322)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHT
T ss_pred             cEEEEECCCcCCHHHHHHHHHHh
Confidence            35889999999999999999754

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=95.44  E-value=0.0037  Score=46.28  Aligned_cols=22  Identities=32%  Similarity=0.566  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q 028300           16 KILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~   37 (211)
                      .|++.|++|+|||+|++.+...
T Consensus        46 ~vll~G~~GtGKT~la~~la~~   67 (268)
T 2r62_A           46 GVLLVGPPGTGKTLLAKAVAGE   67 (268)
T ss_dssp             CCCCBCSSCSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHH
Confidence            4889999999999999998753

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=95.42  E-value=0.0075  Score=46.87  Aligned_cols=25  Identities=24%  Similarity=0.333  Sum_probs=21.2

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhhC
Q 028300           13 LSFKILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        13 ~~~~I~v~G~~~~GKssli~~l~~~   37 (211)
                      ..-.++|.|++|+|||+|++.+...
T Consensus        43 ~~~~vll~G~~G~GKT~l~~~~~~~   67 (387)
T 2v1u_A           43 KPSNALLYGLTGTGKTAVARLVLRR   67 (387)
T ss_dssp             CCCCEEECBCTTSSHHHHHHHHHHH
T ss_pred             CCCcEEEECCCCCCHHHHHHHHHHH
Confidence            3447899999999999999998754

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=95.42  E-value=0.0069  Score=49.82  Aligned_cols=25  Identities=32%  Similarity=0.553  Sum_probs=21.7

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhhC
Q 028300           13 LSFKILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        13 ~~~~I~v~G~~~~GKssli~~l~~~   37 (211)
                      ..-.|+++|++|||||||++.|.+.
T Consensus       368 ~G~iI~LiG~sGSGKSTLar~La~~  392 (552)
T 3cr8_A          368 QGFTVFFTGLSGAGKSTLARALAAR  392 (552)
T ss_dssp             SCEEEEEEESSCHHHHHHHHHHHHH
T ss_pred             cceEEEEECCCCChHHHHHHHHHHh
Confidence            4467999999999999999998764

>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*

Probab=95.41  E-value=0.015  Score=47.47  Aligned_cols=24  Identities=17%  Similarity=0.275  Sum_probs=20.8

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHh
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFI   35 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~   35 (211)
                      ....-|+++|.+|+||||+.+.|.
T Consensus        33 ~~~~lIvlvGlpGSGKSTia~~La   56 (520)
T 2axn_A           33 NSPTVIVMVGLPARGKTYISKKLT   56 (520)
T ss_dssp             CCCEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHH
Confidence            445679999999999999999885

>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12

Probab=95.41  E-value=0.0015  Score=47.43  Aligned_cols=23  Identities=30%  Similarity=0.645  Sum_probs=19.3

Q ss_pred             EEEEcCCCCcHHHHHHHHhhCCC
Q 028300           17 ILLIGDSGVGKSSLLVSFISSSV   39 (211)
Q Consensus        17 I~v~G~~~~GKssli~~l~~~~~   39 (211)
                      ++|+|+.|+|||||++.+.+...
T Consensus        30 ~~i~GpnGsGKSTll~~i~g~~~   52 (227)
T 1qhl_A           30 TTLSGGNGAGKSTTMAAFVTALI   52 (227)
T ss_dssp             HHHHSCCSHHHHHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHhcccc
Confidence            46889999999999999886543

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=95.38  E-value=0.0096  Score=46.14  Aligned_cols=23  Identities=22%  Similarity=0.553  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhhC
Q 028300           15 FKILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        15 ~~I~v~G~~~~GKssli~~l~~~   37 (211)
                      -.+++.|++|+|||+|++.+...
T Consensus        71 ~~vLl~GppGtGKT~la~~la~~   93 (368)
T 3uk6_A           71 RAVLIAGQPGTGKTAIAMGMAQA   93 (368)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            37899999999999999998754

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=95.36  E-value=0.013  Score=44.39  Aligned_cols=24  Identities=25%  Similarity=0.452  Sum_probs=20.6

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhhC
Q 028300           14 SFKILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        14 ~~~I~v~G~~~~GKssli~~l~~~   37 (211)
                      +.-|+|+|++|||||+|...|...
T Consensus        10 ~~~i~i~GptgsGKt~la~~La~~   33 (316)
T 3foz_A           10 PKAIFLMGPTASGKTALAIELRKI   33 (316)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CcEEEEECCCccCHHHHHHHHHHh
Confidence            346889999999999999999754

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=95.34  E-value=0.0092  Score=47.72  Aligned_cols=23  Identities=30%  Similarity=0.473  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhhC
Q 028300           15 FKILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        15 ~~I~v~G~~~~GKssli~~l~~~   37 (211)
                      -.+++.|++|+|||+|++.+.+.
T Consensus       131 ~~lll~Gp~G~GKTtLa~aia~~  153 (440)
T 2z4s_A          131 NPLFIYGGVGLGKTHLLQSIGNY  153 (440)
T ss_dssp             CCEEEECSSSSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            35899999999999999988754

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=95.32  E-value=0.01  Score=46.11  Aligned_cols=23  Identities=39%  Similarity=0.488  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhhC
Q 028300           15 FKILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        15 ~~I~v~G~~~~GKssli~~l~~~   37 (211)
                      -.|++.|++|+|||+|++.+...
T Consensus        85 ~~iLL~GppGtGKT~la~ala~~  107 (355)
T 2qp9_X           85 SGILLYGPPGTGKSYLAKAVATE  107 (355)
T ss_dssp             CCEEEECSTTSCHHHHHHHHHHH
T ss_pred             ceEEEECCCCCcHHHHHHHHHHH
Confidence            46899999999999999998864

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=95.31  E-value=0.014  Score=44.87  Aligned_cols=23  Identities=30%  Similarity=0.573  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhhC
Q 028300           15 FKILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        15 ~~I~v~G~~~~GKssli~~l~~~   37 (211)
                      .-|+|+|++|||||+|...|...
T Consensus        41 ~lIvI~GPTgsGKTtLa~~LA~~   63 (339)
T 3a8t_A           41 KLLVLMGATGTGKSRLSIDLAAH   63 (339)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTT
T ss_pred             ceEEEECCCCCCHHHHHHHHHHH
Confidence            36899999999999999999854

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=95.31  E-value=0.012  Score=51.60  Aligned_cols=24  Identities=29%  Similarity=0.517  Sum_probs=21.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCCC
Q 028300           16 KILLIGDSGVGKSSLLVSFISSSV   39 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~~~   39 (211)
                      .++++|+.|+|||||++.+.++..
T Consensus       463 ~v~LiGpNGsGKSTLLk~LagG~i  486 (986)
T 2iw3_A          463 RYGICGPNGCGKSTLMRAIANGQV  486 (986)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHTCS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCc
Confidence            589999999999999999997644

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=95.30  E-value=0.0096  Score=46.99  Aligned_cols=21  Identities=29%  Similarity=0.309  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhh
Q 028300           16 KILLIGDSGVGKSSLLVSFIS   36 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~   36 (211)
                      -+.|+|++|+|||||+..++.
T Consensus       180 i~~I~G~sGsGKTTLl~~la~  200 (400)
T 3lda_A          180 ITELFGEFRTGKSQLCHTLAV  200 (400)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCChHHHHHHHHH
Confidence            578999999999999998763

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=95.30  E-value=0.0067  Score=53.07  Aligned_cols=23  Identities=35%  Similarity=0.606  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCC
Q 028300           16 KILLIGDSGVGKSSLLVSFISSS   38 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~~   38 (211)
                      .++|+|+.|+|||||++.+.+..
T Consensus       701 ivaIiGpNGSGKSTLLklLaGll  723 (986)
T 2iw3_A          701 RIAVIGPNGAGKSTLINVLTGEL  723 (986)
T ss_dssp             EEEECSCCCHHHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            78999999999999999998653

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=95.30  E-value=0.013  Score=40.43  Aligned_cols=24  Identities=29%  Similarity=0.659  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhhCC
Q 028300           15 FKILLIGDSGVGKSSLLVSFISSS   38 (211)
Q Consensus        15 ~~I~v~G~~~~GKssli~~l~~~~   38 (211)
                      .-|++.|++|+||||+...|....
T Consensus        17 ~gvli~G~SGaGKStlal~L~~rG   40 (181)
T 3tqf_A           17 MGVLITGEANIGKSELSLALIDRG   40 (181)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHHTT
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHcC
Confidence            368999999999999999998753

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=95.27  E-value=0.0099  Score=48.27  Aligned_cols=23  Identities=35%  Similarity=0.566  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhhC
Q 028300           15 FKILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        15 ~~I~v~G~~~~GKssli~~l~~~   37 (211)
                      -.|+++|++|+|||+|++.+.+.
T Consensus        65 ~GvLL~GppGtGKTtLaraIa~~   87 (499)
T 2dhr_A           65 KGVLLVGPPGVGKTHLARAVAGE   87 (499)
T ss_dssp             SEEEEECSSSSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHH
Confidence            35999999999999999999864

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=95.27  E-value=0.0075  Score=43.75  Aligned_cols=24  Identities=29%  Similarity=0.281  Sum_probs=17.7

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhh
Q 028300           13 LSFKILLIGDSGVGKSSLLVSFIS   36 (211)
Q Consensus        13 ~~~~I~v~G~~~~GKssli~~l~~   36 (211)
                      +..-|+|.|++||||||+++.|..
T Consensus        24 ~g~~I~~eG~~GsGKsT~~~~l~~   47 (227)
T 3v9p_A           24 RGKFITFEGIDGAGKTTHLQWFCD   47 (227)
T ss_dssp             CCCEEEEECCC---CHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            346799999999999999998864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	211
d2fu5c1	173	c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta	3e-53
d1g16a_	166	c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye	1e-50
d2ew1a1	171	c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [Ta	4e-49
d2g6ba1	170	c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [T	1e-48
d2bcgy1	194	c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Sac	8e-48
d1x3sa1	177	c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta	2e-47
d3raba_	169	c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI	3e-47
d1z0fa1	166	c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [Ta	3e-46
d2bmea1	174	c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [Ta	6e-44
d2f7sa1	186	c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [T	7e-44
d2f9la1	175	c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [T	2e-43
d1z08a1	167	c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [T	5e-39
d1yzqa1	164	c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [Ta	1e-38
d1r2qa_	170	c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId:	3e-38
d2a5ja1	173	c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [Ta	3e-38
d1kaoa_	167	c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId:	1e-37
d1mh1a_	183	c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 96	2e-35
d2atxa1	185	c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [Tax	2e-35
d1z06a1	165	c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus)	6e-35
d1u8za_	168	c.37.1.8 (A:) Ras-related protein RalA {Cotton-top	1e-34
d1wmsa_	174	c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId:	4e-34
d2ngra_	191	c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId:	4e-34
d1ctqa_	166	c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapi	5e-34
d1ek0a_	170	c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces	8e-34
d1z0ja1	167	c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [	1e-32
d2fn4a1	173	c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [T	1e-32
d2erya1	171	c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [	2e-32
d1moza_	182	c.37.1.8 (A:) ADP-ribosylation factor {Baker's yea	9e-32
d1e0sa_	173	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	1e-31
d1c1ya_	167	c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId:	1e-31
d1r8sa_	160	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	1e-31
d1vg8a_	184	c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId	2e-31
d1z2aa1	164	c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [Ta	2e-31
d1kmqa_	177	c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9	3e-31
d2erxa1	171	c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [	4e-31
d1x1ra1	169	c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRa	1e-30
d1ky3a_	175	c.37.1.8 (A:) Rab-related protein ypt7p {Baker's y	1e-28
d2atva1	168	c.37.1.8 (A:5-172) Ras-like estrogen-regulated gro	2e-28
d1zj6a1	177	c.37.1.8 (A:2-178) ADP-ribosylation factor {Human	5e-28
d1m7ba_	179	c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [T	1e-27
d1xtqa1	167	c.37.1.8 (A:3-169) GTP-binding protein RheB {Human	1e-27
d2gjsa1	168	c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [Tax	3e-27
d1fzqa_	176	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	5e-27
d1i2ma_	170	c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 96	8e-27
d1ksha_	165	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	2e-26
d2g3ya1	172	c.37.1.8 (A:73-244) GTP-binding protein GEM {Human	1e-24
d2qtvb1	166	c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharom	2e-24
d2bmja1	175	c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {H	1e-23
d1upta_	169	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	1e-22
d1azta2	221	c.37.1.8 (A:35-65,A:202-391) Transducin (alpha sub	5e-21
d1zd9a1	164	c.37.1.8 (A:18-181) ADP-ribosylation factor {Human	8e-21
d2bcjq2	200	c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha sub	3e-19
d1f6ba_	186	c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus gr	1e-18
d1zcba2	200	c.37.1.8 (A:47-75,A:202-372) Transducin (alpha sub	1e-18
d2fh5b1	207	c.37.1.8 (B:63-269) Signal recognition particle re	6e-16
d1svsa1	195	c.37.1.8 (A:32-60,A:182-347) Transducin (alpha sub	9e-16
d1udxa2	180	c.37.1.8 (A:157-336) Obg GTP-binding protein middl	4e-10
d2gj8a1	161	c.37.1.8 (A:216-376) Probable tRNA modification GT	9e-10
d1nrjb_	209	c.37.1.8 (B:) Signal recognition particle receptor	1e-08
d1wf3a1	178	c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {	7e-08
d1mkya2	186	c.37.1.8 (A:173-358) Probable GTPase Der, N-termin	1e-06
d1xzpa2	160	c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotog	1e-06
d1puia_	188	c.37.1.8 (A:) Probable GTPase EngB {Escherichia co	3e-06
d1h65a_	257	c.37.1.8 (A:) Chloroplast protein translocon GTPas	9e-06
d1egaa1	179	c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {	1e-05
d1mkya1	171	c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal	3e-05
d1tq4a_	400	c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (	5e-05
d1lnza2	185	c.37.1.8 (A:158-342) Obg GTP-binding protein middl	1e-04
d1svia_	195	c.37.1.8 (A:) Probable GTPase EngB {Bacillus subti	6e-04

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  166 bits (422), Expect = 3e-53
 Identities = 82/170 (48%), Positives = 110/170 (64%), Gaps = 3/170 (1%)

Query: 10  SYDLSFKILLIGDSGVGKSSLLVSFISSS-VDDLSPTIGVDFKIKLLTVAGKRLKLTIWD 68
           +YD  FK+LLIGDSGVGK+ +L  F   +       TIG+DFKI+ + + GKR+KL IWD
Sbjct: 2   TYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWD 61

Query: 69  TAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGN 128
           TAGQERFRT+T++YYRGA GI+LVYD+T  ++F N+ +           + D  KM++GN
Sbjct: 62  TAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWI--RNIEEHASADVEKMILGN 119

Query: 129 KVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIME 178
           K D + +R VS+E G  LA ++G  F+E SAK   NVE  F  LA  I  
Sbjct: 120 KCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKA 169

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  159 bits (404), Expect = 1e-50
 Identities = 88/165 (53%), Positives = 108/165 (65%), Gaps = 4/165 (2%)

Query: 15  FKILLIGDSGVGKSSLLVSFISSS-VDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQE 73
            KILLIGDSGVGKS LLV F+          TIG+DFKIK + + GK++KL IWDTAGQE
Sbjct: 3   MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQE 62

Query: 74  RFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRD 133
           RFRT+T++YYRGA GIILVYD+T   TFTN+   +         N +   +LVGNK D  
Sbjct: 63  RFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVN--EHANDEAQLLLVGNKSD-M 119

Query: 134 SERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIME 178
             RVV+ ++G ALAKE G  F+E SAK  +NV + F  LA  I E
Sbjct: 120 ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQE 164

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  156 bits (394), Expect = 4e-49
 Identities = 70/169 (41%), Positives = 100/169 (59%), Gaps = 3/169 (1%)

Query: 11  YDLSFKILLIGDSGVGKSSLLVSFISSS-VDDLSPTIGVDFKIKLLTVAGKRLKLTIWDT 69
           YD  FKI+LIG++GVGK+ L+  F           TIGVDF IK + + G+++KL IWDT
Sbjct: 2   YDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDT 61

Query: 70  AGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNK 129
           AGQERFR++T SYYR A  +IL YD+T  E+F  L +           +   + +LVGNK
Sbjct: 62  AGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWL--REIEQYASNKVITVLVGNK 119

Query: 130 VDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIME 178
           +D    R VS++     ++     +LE SAK  +NVE+ F  LA +++ 
Sbjct: 120 IDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLIS 168

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  155 bits (391), Expect = 1e-48
 Identities = 78/169 (46%), Positives = 111/169 (65%), Gaps = 4/169 (2%)

Query: 10  SYDLSFKILLIGDSGVGKSSLLVSFISSS--VDDLSPTIGVDFKIKLLTVAGKRLKLTIW 67
            YD++FK++L+GDSGVGK+ LLV F   +        T+G+DF+ K+L V G ++KL +W
Sbjct: 2   FYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMW 61

Query: 68  DTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVG 127
           DTAGQERFR++T +YYR A  ++L+YDVT + +F N+     +  +      D   ML+G
Sbjct: 62  DTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYA--QHDVALMLLG 119

Query: 128 NKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKI 176
           NKVD   ERVV RE+G  LAKE+G  F+E SAKT  NV+  F  +A ++
Sbjct: 120 NKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKEL 168

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  153 bits (387), Expect = 8e-48
 Identities = 85/186 (45%), Positives = 109/186 (58%), Gaps = 3/186 (1%)

Query: 9   NSYDLSFKILLIGDSGVGKSSLLVSFISSS-VDDLSPTIGVDFKIKLLTVAGKRLKLTIW 67
           + YD  FK+LLIG+SGVGKS LL+ F   +  +D   TIGVDFKIK + + GK +KL IW
Sbjct: 1   SEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIW 60

Query: 68  DTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVG 127
           DTAGQERFRT+TSSYYRG+ GII+VYDVT +E+F  +      +          +K+LVG
Sbjct: 61  DTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWL--QEIDRYATSTVLKLLVG 118

Query: 128 NKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIMEVPSLLEEGS 187
           NK D   +RVV  +     A  +   FLE SA    NVE  F  +A +I E  S      
Sbjct: 119 NKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLNE 178

Query: 188 NVVKRN 193
              K+ 
Sbjct: 179 TTQKKE 184

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  152 bits (384), Expect = 2e-47
 Identities = 86/175 (49%), Positives = 113/175 (64%), Gaps = 3/175 (1%)

Query: 11  YDLSFKILLIGDSGVGKSSLLVSFISSS-VDDLSPTIGVDFKIKLLTVAGKRLKLTIWDT 69
              + KIL+IG+SGVGKSSLL+ F   +   +L+ TIGVDFK+K ++V G + KL IWDT
Sbjct: 4   VLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDT 63

Query: 70  AGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNK 129
           AGQERFRTLT SYYRGAQG+ILVYDVTRR+TF  L +   +     + N      ++   
Sbjct: 64  AGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIV--NMLVGN 121

Query: 130 VDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIMEVPSLLE 184
                 R V R EG+  A++H  LF+E SAKT + V+  FE+L  KI++ P L E
Sbjct: 122 KIDKENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTPGLWE 176

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  151 bits (381), Expect = 3e-47
 Identities = 79/169 (46%), Positives = 103/169 (60%), Gaps = 3/169 (1%)

Query: 11  YDLSFKILLIGDSGVGKSSLLVSFISSS-VDDLSPTIGVDFKIKLLTVAGKRLKLTIWDT 69
           +D  FKIL+IG+S VGK+S L  +   S       T+G+DFK+K +    KR+KL IWDT
Sbjct: 2   FDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDT 61

Query: 70  AGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNK 129
           AGQER+RT+T++YYRGA G IL+YD+T  E+F  + D          +  +   +LVGNK
Sbjct: 62  AGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWS--TQIKTYSWDNAQVLLVGNK 119

Query: 130 VDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIME 178
            D + ERVVS E G  LA   G  F E SAK   NV+Q FE+L   I E
Sbjct: 120 CDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICE 168

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  148 bits (374), Expect = 3e-46
 Identities = 83/167 (49%), Positives = 111/167 (66%), Gaps = 3/167 (1%)

Query: 11  YDLSFKILLIGDSGVGKSSLLVSFISSS-VDDLSPTIGVDFKIKLLTVAGKRLKLTIWDT 69
           Y   FK ++IGD GVGKS LL  F     + D   TIGV+F  +++ V+G+++KL IWDT
Sbjct: 1   YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDT 60

Query: 70  AGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNK 129
           AGQERFR +T SYYRGA G ++VYD+TRR T+ +LS       +   TN + V +L+GNK
Sbjct: 61  AGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARN--LTNPNTVIILIGNK 118

Query: 130 VDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKI 176
            D +++R V+ EE    A+E+G LFLE SAKT ENVE  F + A KI
Sbjct: 119 ADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKI 165

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  143 bits (360), Expect = 6e-44
 Identities = 85/170 (50%), Positives = 112/170 (65%), Gaps = 3/170 (1%)

Query: 10  SYDLSFKILLIGDSGVGKSSLLVSFISSS-VDDLSPTIGVDFKIKLLTVAGKRLKLTIWD 68
           +YD  FK L+IG++G GKS LL  FI     DD + TIGV+F  K++ V GK +KL IWD
Sbjct: 1   TYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWD 60

Query: 69  TAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGN 128
           TAGQERFR++T SYYRGA G +LVYD+T RET+  L++       L   +Q+ V +L GN
Sbjct: 61  TAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLA--SQNIVIILCGN 118

Query: 129 KVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIME 178
           K D D++R V+  E    A+E+  +FLE SA T ENVE+ F Q A KI+ 
Sbjct: 119 KKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILN 168

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  143 bits (360), Expect = 7e-44
 Identities = 59/179 (32%), Positives = 103/179 (57%), Gaps = 12/179 (6%)

Query: 11  YDLSFKILLIGDSGVGKSSLLVSFISSS-VDDLSPTIGVDFKIKLLTVAGK--------- 60
           YD   K+L +GDSGVGK++ L  +  +        T+G+DF+ K +    +         
Sbjct: 2   YDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKA 61

Query: 61  -RLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQ 119
            ++ L +WDTAGQERFR+LT++++R A G +L++D+T +++F N+ +  ++     +  +
Sbjct: 62  FKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQA-NAYCE 120

Query: 120 DCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIME 178
           +   +L+GNK D   +R V+  +   LA ++G  + E SA T +NVE+  E L   IM+
Sbjct: 121 NPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLIMK 179

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  141 bits (356), Expect = 2e-43
 Identities = 74/172 (43%), Positives = 104/172 (60%), Gaps = 3/172 (1%)

Query: 11  YDLSFKILLIGDSGVGKSSLLVSFISSS-VDDLSPTIGVDFKIKLLTVAGKRLKLTIWDT 69
           YD  FK++LIGDSGVGKS+LL  F  +    +   TIGV+F  + + V GK +K  IWDT
Sbjct: 1   YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 60

Query: 70  AGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNK 129
           AGQER+R +TS+YYRGA G +LVYD+ +  T+ N+     +  D    + + V MLVGNK
Sbjct: 61  AGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRD--HADSNIVIMLVGNK 118

Query: 130 VDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIMEVPS 181
            D    R V  +E  A A+++   F+E SA    NVE+ F+ +  +I  + S
Sbjct: 119 SDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVS 170

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  130 bits (326), Expect = 5e-39
 Identities = 62/170 (36%), Positives = 96/170 (56%), Gaps = 5/170 (2%)

Query: 10  SYDLSFKILLIGDSGVGKSSLLVSFISSS-VDDLSPTIGVDFKIKLLTVAGKRLKLTIWD 68
           +Y  SFK++L+G+  VGK+SL++ +  +   D    T+G  F  K L + GKR+ L IWD
Sbjct: 1   AY--SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWD 58

Query: 69  TAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGN 128
           TAGQERF  L   YYR + G ILVYD+T  ++F  + +   +         +    +VGN
Sbjct: 59  TAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELR--KMLGNEICLCIVGN 116

Query: 129 KVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIME 178
           K+D + ER VS +E  + A+  G+     SAK  + +E+ F  L  +++E
Sbjct: 117 KIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIE 166

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  129 bits (324), Expect = 1e-38
 Identities = 63/163 (38%), Positives = 93/163 (57%), Gaps = 3/163 (1%)

Query: 15  FKILLIGDSGVGKSSLLVSFISSS-VDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQE 73
           FK++ +G+  VGK+SL+  F+  S  +    TIG+DF  K + +  + ++L +WDTAGQE
Sbjct: 1   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQE 60

Query: 74  RFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRD 133
           RFR+L  SY R +   ++VYD+T   +F   +              D + MLVGNK D  
Sbjct: 61  RFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRT--ERGSDVIIMLVGNKTDLA 118

Query: 134 SERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKI 176
            +R VS EEG   AKE   +F+E SAK   NV+Q F ++A  +
Sbjct: 119 DKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 161

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  128 bits (322), Expect = 3e-38
 Identities = 62/166 (37%), Positives = 94/166 (56%), Gaps = 3/166 (1%)

Query: 14  SFKILLIGDSGVGKSSLLVSFISSS-VDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQ 72
            FK++L+G+S VGKSSL++ F+     +    TIG  F  + + +    +K  IWDTAGQ
Sbjct: 6   QFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQ 65

Query: 73  ERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDR 132
           ER+ +L   YYRGAQ  I+VYD+T  E+F    +    +      + + V  L GNK D 
Sbjct: 66  ERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWV--KELQRQASPNIVIALSGNKADL 123

Query: 133 DSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIME 178
            ++R V  +E  + A ++  LF+E SAKT  NV + F  +A K+ +
Sbjct: 124 ANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  128 bits (321), Expect = 3e-38
 Identities = 84/170 (49%), Positives = 111/170 (65%), Gaps = 5/170 (2%)

Query: 10  SYDLSFKILLIGDSGVGKSSLLVSFISSS-VDDLSPTIGVDFKIKLLTVAGKRLKLTIWD 68
           SY   FK ++IGD+GVGKS LL+ F           TIGV+F  +++ + GK++KL IWD
Sbjct: 1   SY--LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWD 58

Query: 69  TAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGN 128
           TAGQE FR++T SYYRGA G +LVYD+TRRETF +L+           ++ + V ML+GN
Sbjct: 59  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQ--HSSSNMVIMLIGN 116

Query: 129 KVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIME 178
           K D +S R V REEG A A+EHG +F+E SAKT  NVE+ F   A +I  
Sbjct: 117 KSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYR 166

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  126 bits (317), Expect = 1e-37
 Identities = 56/162 (34%), Positives = 93/162 (57%), Gaps = 1/162 (0%)

Query: 15  FKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER 74
           +K++++G  GVGKS+L V F++ +  +       DF  K + V      L I DTAG E+
Sbjct: 4   YKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQ 63

Query: 75  FRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDS 134
           F ++   Y +  QG ILVY +  +++F ++  +   ++      +    +LVGNKVD +S
Sbjct: 64  FASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMR-DQIIRVKRYEKVPVILVGNKVDLES 122

Query: 135 ERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKI 176
           ER VS  EG ALA+E G  F+E SAK++  V++ F ++  ++
Sbjct: 123 EREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQM 164

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} Length = 183

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  121 bits (303), Expect = 2e-35
 Identities = 48/180 (26%), Positives = 87/180 (48%), Gaps = 15/180 (8%)

Query: 14  SFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQE 73
           + K +++GD  VGK+ LL+S+ +++          D     + V GK + L +WDTAGQE
Sbjct: 5   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQE 64

Query: 74  RFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRD 133
            +  L    Y      ++ + +    +F N+   W  EV  +  N     +LVG K+D  
Sbjct: 65  DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPN--TPIILVGTKLDLR 122

Query: 134 SERVVSRE------------EGIALAKEHGSL-FLECSAKTRENVEQCFEQLALKIMEVP 180
            ++    +            +G+A+AKE G++ +LECSA T+  ++  F++    ++  P
Sbjct: 123 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPP 182

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} Length = 185

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  121 bits (303), Expect = 2e-35
 Identities = 47/184 (25%), Positives = 87/184 (47%), Gaps = 15/184 (8%)

Query: 8   SNSYDLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIW 67
                L  K +++GD  VGK+ LL+S+ + +  +       D     +TV GK+  L ++
Sbjct: 3   HGPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLY 62

Query: 68  DTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVG 127
           DTAGQE +  L    Y      ++ + V    +F N+ + W  E+  Y    +   +L+G
Sbjct: 63  DTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEY--APNVPFLLIG 120

Query: 128 NKVDRDSERV------------VSREEGIALAKEHGSL-FLECSAKTRENVEQCFEQLAL 174
            ++D   +              +  E+G  LAKE G+  ++ECSA T++ ++  F++  +
Sbjct: 121 TQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAII 180

Query: 175 KIME 178
            I+ 
Sbjct: 181 AILT 184

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  119 bits (299), Expect = 6e-35
 Identities = 62/164 (37%), Positives = 86/164 (52%), Gaps = 6/164 (3%)

Query: 15  FKILLIGDSGVGKSSLLVSFISSS-VDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQE 73
           FKI++IGDS VGK+ L   F +    D    TIGVDF+ + + + G+R+K+ +WDTAGQE
Sbjct: 3   FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQE 62

Query: 74  RFRTL-TSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDR 132
           RFR      YYR    ++ VYD+T   +F +L     +E   +    D  ++LVGNK D 
Sbjct: 63  RFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWI-EECKQHLLANDIPRILVGNKCDL 121

Query: 133 DSERVVSREEGIALAKEHGSLFLECSAKTR---ENVEQCFEQLA 173
            S   V  +     A  H     E SAK     ++VE  F  LA
Sbjct: 122 RSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLA 165

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

 Score =  118 bits (297), Expect = 1e-34
 Identities = 50/163 (30%), Positives = 90/163 (55%), Gaps = 1/163 (0%)

Query: 15  FKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER 74
            K++++G  GVGKS+L + F+     +       D   K + + G+ +++ I DTAGQE 
Sbjct: 5   HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQED 64

Query: 75  FRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDS 134
           +  +  +Y+R  +G + V+ +T  E+F   +D + +++     +++   +LVGNK D + 
Sbjct: 65  YAAIRDNYFRSGEGFLCVFSITEMESFAATAD-FREQILRVKEDENVPFLLVGNKSDLED 123

Query: 135 ERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIM 177
           +R VS EE    A +    ++E SAKTR NV++ F  L  +I 
Sbjct: 124 KRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREIR 166

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  117 bits (294), Expect = 4e-34
 Identities = 62/167 (37%), Positives = 93/167 (55%), Gaps = 3/167 (1%)

Query: 15  FKILLIGDSGVGKSSLLVSFISSS-VDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQE 73
           FK++L+GD GVGKSSL+  ++++     L  TIGV+F  K L V G  + + IWDTAGQE
Sbjct: 7   FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQE 66

Query: 74  RFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRD 133
           RFR+L + +YRG+   +L + V   ++F NLS+   + +      +      V      D
Sbjct: 67  RFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKID 126

Query: 134 -SERVVSREEGIALAKEHGSL-FLECSAKTRENVEQCFEQLALKIME 178
            SER VS EE  A  +++G   + E SAK   NV   FE+   +++ 
Sbjct: 127 ISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLA 173

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} Length = 191

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  118 bits (295), Expect = 4e-34
 Identities = 43/181 (23%), Positives = 82/181 (45%), Gaps = 17/181 (9%)

Query: 14  SFKILLIGDSGVGKSSLLVSFISSS-VDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQ 72
           + K +++GD  VGK+ LL+S+ ++    +  PT+  D     + + G+   L ++DTAGQ
Sbjct: 3   TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVF-DNYAVTVMIGGEPYTLGLFDTAGQ 61

Query: 73  ERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDR 132
           E +  L    Y      ++ + V    +F N+ + W  E+           +LVG ++D 
Sbjct: 62  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI--THHCPKTPFLLVGTQIDL 119

Query: 133 DSERVVSR------------EEGIALAKE-HGSLFLECSAKTRENVEQCFEQLALKIMEV 179
             +                 E    LA++     ++ECSA T++ ++  F++  L  +E 
Sbjct: 120 RDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEP 179

Query: 180 P 180
           P
Sbjct: 180 P 180

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  117 bits (293), Expect = 5e-34
 Identities = 49/164 (29%), Positives = 82/164 (50%), Gaps = 2/164 (1%)

Query: 15  FKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER 74
           +K++++G  GVGKS+L +  I +   D       D   K + + G+   L I DTAGQE 
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEE 63

Query: 75  FRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDS 134
           +  +   Y R  +G + V+ +   ++F      + +++     + D   +LVGNK D   
Sbjct: 64  YSAMRDQYMRTGEGFLCVFAINNTKSF-EDIHQYREQIKRVKDSDDVPMVLVGNKCDLA- 121

Query: 135 ERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIME 178
            R V   +   LA+ +G  ++E SAKTR+ VE  F  L  +I +
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  117 bits (292), Expect = 8e-34
 Identities = 71/167 (42%), Positives = 101/167 (60%), Gaps = 6/167 (3%)

Query: 14  SFKILLIGDSGVGKSSLLVSFISSS-VDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQ 72
           S K++L+G++ VGKSS+++ F+S+   ++  PTIG  F  + +T+    +K  IWDTAGQ
Sbjct: 3   SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQ 62

Query: 73  ERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDR 132
           ERF +L   YYR AQ  ++VYDVT+ ++F        +       ++D +  LVGNK+D 
Sbjct: 63  ERFASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELH--EQASKDIIIALVGNKIDM 120

Query: 133 ---DSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKI 176
                ER V+REEG  LA+E G LF E SAKT ENV   F  +  KI
Sbjct: 121 LQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKI 167

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  113 bits (284), Expect = 1e-32
 Identities = 59/163 (36%), Positives = 88/163 (53%), Gaps = 3/163 (1%)

Query: 15  FKILLIGDSGVGKSSLLVSFISSS-VDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQE 73
            K+ L+GD+GVGKSS++  F+  S   +++PTIG  F  K +    +  K  IWDTAG E
Sbjct: 5   LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE 64

Query: 74  RFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRD 133
           RFR L   YYRG+   I+VYD+T+ ETF+ L +   +           V  + GNK D  
Sbjct: 65  RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRE--LRQHGPPSIVVAIAGNKCDLT 122

Query: 134 SERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKI 176
             R V   +    A    ++F+E SAK   N+ + F +++ +I
Sbjct: 123 DVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI 165

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  113 bits (284), Expect = 1e-32
 Identities = 56/165 (33%), Positives = 85/165 (51%), Gaps = 1/165 (0%)

Query: 14  SFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQE 73
           + K++++G  GVGKS+L + FI S           D   K+ +V G   +L I DTAGQE
Sbjct: 6   THKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQE 65

Query: 74  RFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRD 133
            F  +   Y R   G +LV+ +  R++F  +  ++ + +       D   +LVGNK D +
Sbjct: 66  EFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILR-VKDRDDFPVVLVGNKADLE 124

Query: 134 SERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIME 178
           S+R V R E  A    H   + E SAK R NV++ FEQL   + +
Sbjct: 125 SQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVRK 169

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  113 bits (282), Expect = 2e-32
 Identities = 54/164 (32%), Positives = 88/164 (53%), Gaps = 1/164 (0%)

Query: 15  FKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER 74
           ++++++G  GVGKS+L + FI S           D   K   +  +  +L I DTAGQE 
Sbjct: 6   YRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRAARLDILDTAGQEE 65

Query: 75  FRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDS 134
           F  +   Y R  +G +LV+ VT R +F  +   + +++       +   +L+GNK D D 
Sbjct: 66  FGAMREQYMRTGEGFLLVFSVTDRGSFEEIYK-FQRQILRVKDRDEFPMILIGNKADLDH 124

Query: 135 ERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIME 178
           +R V++EEG  LA++    ++E SAK R NV+Q F +L   I +
Sbjct: 125 QRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHELVRVIRK 168

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} Length = 182

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

 Score =  111 bits (279), Expect = 9e-32
 Identities = 45/167 (26%), Positives = 71/167 (42%), Gaps = 8/167 (4%)

Query: 15  FKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER 74
            +IL++G  G GK+++L       V    PTIG + +    T++ K LKL +WD  GQ  
Sbjct: 18  LRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVE----TLSYKNLKLNVWDLGGQTS 73

Query: 75  FRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRD- 133
            R     YY     +I V D T ++  +  S      +      QD   ++  NK D+  
Sbjct: 74  IRPYWRCYYADTAAVIFVVDSTDKDRMSTASK-ELHLMLQEEELQDAALLVFANKQDQPG 132

Query: 134 --SERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIME 178
             S   VS+E  +   K+     +  SA   E + +  + L   I E
Sbjct: 133 ALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVIKE 179

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

 Score =  111 bits (278), Expect = 1e-31
 Identities = 35/165 (21%), Positives = 64/165 (38%), Gaps = 8/165 (4%)

Query: 15  FKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER 74
            +IL++G    GK+++L            PT+G + +    TV  K +K  +WD  GQ++
Sbjct: 13  MRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVE----TVTYKNVKFNVWDVGGQDK 68

Query: 75  FRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDR-- 132
            R L   YY G QG+I V D   R+            +      +D + ++  NK D   
Sbjct: 69  IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQ-ELHRIINDREMRDAIILIFANKQDLPD 127

Query: 133 -DSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKI 176
                 +  + G+   ++         A + + + +    L    
Sbjct: 128 AMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNY 172

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  111 bits (277), Expect = 1e-31
 Identities = 57/163 (34%), Positives = 88/163 (53%), Gaps = 2/163 (1%)

Query: 15  FKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER 74
           +K++++G  GVGKS+L V F+     +       D   K + V  ++  L I DTAG E+
Sbjct: 4   YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQ 63

Query: 75  FRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDS 134
           F  +   Y +  QG  LVY +T + TF N      +++      +D   +LVGNK D + 
Sbjct: 64  FTAMRDLYMKNGQGFALVYSITAQSTF-NDLQDLREQILRVKDTEDVPMILVGNKCDLED 122

Query: 135 ERVVSREEGIALAKEHGSL-FLECSAKTRENVEQCFEQLALKI 176
           ERVV +E+G  LA++  +  FLE SAK++ NV + F  L  +I
Sbjct: 123 ERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

 Score =  110 bits (276), Expect = 1e-31
 Identities = 28/163 (17%), Positives = 64/163 (39%), Gaps = 6/163 (3%)

Query: 16  KILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERF 75
           +IL++G    GK+++L       +     T        + TV  K +  T+WD  GQ++ 
Sbjct: 2   RILMVGLDAAGKTTILYKLKLGEI----VTTIPTIGFNVETVEYKNISFTVWDVGGQDKI 57

Query: 76  RTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRD-- 133
           R L   Y++  QG+I V D   RE      +   + +         + +    +   +  
Sbjct: 58  RPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM 117

Query: 134 SERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKI 176
           +   ++ + G+   +          A + + + +  + L+ ++
Sbjct: 118 NAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 160

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  111 bits (277), Expect = 2e-31
 Identities = 57/178 (32%), Positives = 100/178 (56%), Gaps = 3/178 (1%)

Query: 15  FKILLIGDSGVGKSSLLVSFISSS-VDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQE 73
            K++++GDSGVGK+SL+  +++    +    TIG DF  K + V  + + + IWDTAGQE
Sbjct: 3   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQE 62

Query: 74  RFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTN--QDCVKMLVGNKVD 131
           RF++L  ++YRGA   +LV+DVT   TF  L     + +   S    ++   +++GNK+D
Sbjct: 63  RFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKID 122

Query: 132 RDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIMEVPSLLEEGSNV 189
            ++ +V ++        ++   + E SAK   NVEQ F+ +A   ++  + +E  +  
Sbjct: 123 LENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVELYNEF 180

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  110 bits (275), Expect = 2e-31
 Identities = 59/167 (35%), Positives = 89/167 (53%), Gaps = 4/167 (2%)

Query: 13  LSFKILLIGDSGVGKSSLLVSFISSS-VDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAG 71
           ++ K++++G+  VGKSS++  +       D   TIGVDF  + + V  + ++L +WDTAG
Sbjct: 1   VAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAG 60

Query: 72  QERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVD 131
           QE F  +T +YYRGAQ  +LV+  T RE+F  +S    K     +   D    LV NK+D
Sbjct: 61  QEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKV---VAEVGDIPTALVQNKID 117

Query: 132 RDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIME 178
              +  +  EE   LAK     F   S K   NV + F+ LA K ++
Sbjct: 118 LLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHLQ 164

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  110 bits (275), Expect = 3e-31
 Identities = 48/180 (26%), Positives = 86/180 (47%), Gaps = 17/180 (9%)

Query: 13  LSFKILLIGDSGVGKSSLLVSFISSS-VDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAG 71
           +  K++++GD   GK+ LL+        +   PT+  +  +  + V GK+++L +WDTAG
Sbjct: 1   IRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVF-ENYVADIEVDGKQVELALWDTAG 59

Query: 72  QERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVD 131
            E +  L    Y     I++ + +   ++  N+ + W  EV  +  N     +LVGNK D
Sbjct: 60  LEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN--VPIILVGNKKD 117

Query: 132 RDSERVVSR------------EEGIALAKEHGSL-FLECSAKTRENVEQCFEQLALKIME 178
             ++    R            EEG  +A   G+  ++ECSAKT++ V + FE      ++
Sbjct: 118 LRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 177

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  110 bits (274), Expect = 4e-31
 Identities = 45/164 (27%), Positives = 75/164 (45%)

Query: 15  FKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER 74
           +++ + G  GVGKSSL++ F+  +  +       D   ++++       L I DT G  +
Sbjct: 3   YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQ 62

Query: 75  FRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDS 134
           F  +           ILVY +T R++   L  ++ +  ++    +    MLVGNK D   
Sbjct: 63  FPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESP 122

Query: 135 ERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIME 178
            R V   E  ALA+     F+E SAK   NV++ F++L      
Sbjct: 123 SREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNLEKR 166

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  108 bits (271), Expect = 1e-30
 Identities = 48/166 (28%), Positives = 82/166 (49%), Gaps = 2/166 (1%)

Query: 14  SFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQE 73
           ++K++++GD GVGKS+L + F              D  +K   +  +   L + DTAGQE
Sbjct: 4   TYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQE 63

Query: 74  RFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRD 133
            F  +   Y R   G ++VY VT + +F ++       + +       + +LV NKVD  
Sbjct: 64  EFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPM-ILVANKVDLM 122

Query: 134 SERVVSREEGIALAKEHGSLFLECSAKTRE-NVEQCFEQLALKIME 178
             R V+R++G  +A ++   ++E SAK    NV++ F  L   I +
Sbjct: 123 HLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQ 168

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  103 bits (257), Expect = 1e-28
 Identities = 59/170 (34%), Positives = 98/170 (57%), Gaps = 6/170 (3%)

Query: 15  FKILLIGDSGVGKSSLLVSFISSS-VDDLSPTIGVDFKIKLLTVAGKRL-KLTIWDTAGQ 72
            K++++GDSGVGK+SL+  +++         TIG DF  K +TV G ++  + +WDTAGQ
Sbjct: 3   LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQ 62

Query: 73  ERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTN--QDCVKMLVGNKV 130
           ERF++L  ++YRGA   +LVYDVT   +F N+     + +   + N  +    +++GNK+
Sbjct: 63  ERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKI 122

Query: 131 DRDSERVVSREEGIA-LAKEHGSL-FLECSAKTRENVEQCFEQLALKIME 178
           D +  + +  E+    LAK  G +     SAK   NV+  FE++A   ++
Sbjct: 123 DAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQ 172

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  102 bits (255), Expect = 2e-28
 Identities = 54/165 (32%), Positives = 81/165 (49%), Gaps = 3/165 (1%)

Query: 15  FKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER 74
            K+ + G +GVGKS+L+V F++                   T+  + + + I DTAGQE 
Sbjct: 3   VKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED 62

Query: 75  FRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDS 134
                  + R  +G +LVYD+T R +F  +  +    +D     ++   +LVGNK D D 
Sbjct: 63  TIQ-REGHMRWGEGFVLVYDITDRGSFEEVLPLK-NILDEIKKPKNVTLILVGNKADLDH 120

Query: 135 ERVVSREEGIALAKEHGSLFLECSAKTRE-NVEQCFEQLALKIME 178
            R VS EEG  LA E    F ECSA T E N+ + F +L  ++  
Sbjct: 121 SRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREVRR 165

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

 Score =  102 bits (254), Expect = 5e-28
 Identities = 39/165 (23%), Positives = 74/165 (44%), Gaps = 8/165 (4%)

Query: 15  FKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER 74
            K++++G    GK+++L  F  + V   SPTIG + +     +     +  +WD  GQE 
Sbjct: 16  HKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVE----EIVINNTRFLMWDIGGQES 71

Query: 75  FRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVD--- 131
            R+  ++YY   + +I+V D T RE  +   +   K +      +  + ++  NK D   
Sbjct: 72  LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGL-LIFANKQDVKE 130

Query: 132 RDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKI 176
             +   +S+   +   K+H      C A T E + Q  E +  ++
Sbjct: 131 CMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRL 175

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  101 bits (251), Expect = 1e-27
 Identities = 43/176 (24%), Positives = 81/176 (46%), Gaps = 16/176 (9%)

Query: 16  KILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERF 75
           KI+++GDS  GK++LL  F      +       +       +  +R++L++WDT+G   +
Sbjct: 4   KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYY 63

Query: 76  RTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVD---- 131
             +    Y  +  +++ +D++R ET  ++   W  E+  +    +   +LVG K D    
Sbjct: 64  DNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEF--CPNTKMLLVGCKSDLRTD 121

Query: 132 --------RDSERVVSREEGIALAKEHGSL-FLECSAKTREN-VEQCFEQLALKIM 177
                      +  VS ++G  +AK+ G+  ++ECSA   EN V   F    L  +
Sbjct: 122 VSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACV 177

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  100 bits (249), Expect = 1e-27
 Identities = 59/164 (35%), Positives = 82/164 (50%), Gaps = 1/164 (0%)

Query: 14  SFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQE 73
           S KI ++G   VGKSSL + F+     D       +   KL+TV G+   L + DTAGQ+
Sbjct: 4   SRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQD 63

Query: 74  RFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRD 133
            +     +Y     G ILVY VT  ++F  +  +  K +D          MLVGNK D  
Sbjct: 64  EYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLD-MVGKVQIPIMLVGNKKDLH 122

Query: 134 SERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIM 177
            ERV+S EEG ALA+   + FLE SAK  +     F ++ L+  
Sbjct: 123 MERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEAE 166

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 99.8 bits (247), Expect = 3e-27
 Identities = 48/164 (29%), Positives = 72/164 (43%), Gaps = 2/164 (1%)

Query: 15  FKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER 74
           +K+LL+G  GVGKS+L   F        +   G     + + V G+   L ++D   Q+ 
Sbjct: 2   YKVLLLGAPGVGKSALARIFGGVEDGPEAEAAG-HTYDRSIVVDGEEASLMVYDIWEQDG 60

Query: 75  FRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDS 134
            R L           ++VY VT + +F   S++  +         D   +LVGNK D   
Sbjct: 61  GRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRR-ARQTDDVPIILVGNKSDLVR 119

Query: 135 ERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIME 178
            R VS +EG A A      F+E SA    NV+  FE +  +I  
Sbjct: 120 SREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIRL 163

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

 Score = 99.6 bits (247), Expect = 5e-27
 Identities = 39/171 (22%), Positives = 68/171 (39%), Gaps = 8/171 (4%)

Query: 9   NSYDLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWD 68
           ++ D   +ILL+G    GK++LL    S  +  ++PT G + K    +V  +  KL +WD
Sbjct: 11  SAPDQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIK----SVQSQGFKLNVWD 66

Query: 69  TAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGN 128
             GQ + R    SY+     +I V D   R+ F   +     E+           ++  N
Sbjct: 67  IGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEE-TGQELTELLEEEKLSCVPVLIFAN 125

Query: 129 KVD---RDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKI 176
           K D         ++    +   ++       CSA T E V+     +   +
Sbjct: 126 KQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNV 176

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 99.0 bits (245), Expect = 8e-27
 Identities = 53/171 (30%), Positives = 89/171 (52%), Gaps = 6/171 (3%)

Query: 13  LSFKILLIGDSGVGKSSLLVSFISSS-VDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAG 71
           + FK++L+GD G GK++ +   ++         T+GV+    +       +K  +WDTAG
Sbjct: 2   VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAG 61

Query: 72  QERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVD 131
           QE+F  L   YY  AQ  I+++DVT R T+ N+ +      DL    ++   +L GNKVD
Sbjct: 62  QEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWH---RDLVRVCENIPIVLCGNKVD 118

Query: 132 RDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIMEVPSL 182
               +V ++   I   ++    + + SAK+  N E+ F  LA K++  P+L
Sbjct: 119 IKDRKVKAKS--IVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNL 167

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

 Score = 97.8 bits (242), Expect = 2e-26
 Identities = 38/167 (22%), Positives = 67/167 (40%), Gaps = 8/167 (4%)

Query: 15  FKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER 74
            ++L++G    GK+++L  F    VD +SPT+G + K        +  KL IWD  GQ+ 
Sbjct: 3   LRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTL----EHRGFKLNIWDVGGQKS 58

Query: 75  FRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDS 134
            R+   +Y+    G+I V D   R+   +      + + +         ++  NK D   
Sbjct: 59  LRSYWRNYFESTDGLIWVVDSADRQRMQDCQREL-QSLLVEERLAGATLLIFANKQDLPG 117

Query: 135 ERVVS---REEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIME 178
               +       +   + H      CSA T E++    + L   I  
Sbjct: 118 ALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISS 164

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} Length = 172

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 93.3 bits (230), Expect = 1e-24
 Identities = 43/172 (25%), Positives = 71/172 (41%), Gaps = 5/172 (2%)

Query: 9   NSYDLSFKILLIGDSGVGKSSLLVSFISS--SVDDLSPTIGVDFKIKLLTVAGKRLKLTI 66
           N+Y   ++++LIG+ GVGKS+L   F     S+D     +G D   + L V G+   + +
Sbjct: 1   NTY---YRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIIL 57

Query: 67  WDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLV 126
            D    +        +        L+            +     ++      +D   +LV
Sbjct: 58  LDMWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILV 117

Query: 127 GNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIME 178
           GNK D    R VS  EG A A      F+E SA  + NV++ FE +  ++  
Sbjct: 118 GNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQVRL 169

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 92.8 bits (229), Expect = 2e-24
 Identities = 31/168 (18%), Positives = 60/168 (35%), Gaps = 15/168 (8%)

Query: 16  KILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERF 75
           K+L +G    GK++LL    +  +     T+   +      +A   +K T +D  G  + 
Sbjct: 2   KLLFLGLDNAGKTTLLHMLKNDRL----ATLQPTWHPTSEELAIGNIKFTTFDLGGHIQA 57

Query: 76  RTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSE 135
           R L   Y+    GI+ + D    E F          +   +  +D   +++GNK+D  + 
Sbjct: 58  RRLWKDYFPEVNGIVFLVDAADPERFDEARV-ELDALFNIAELKDVPFVILGNKIDAPNA 116

Query: 136 RVVSR----------EEGIALAKEHGSLFLECSAKTRENVEQCFEQLA 173
              +                +  +       CS   R    + F+ L+
Sbjct: 117 VSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLS 164

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 90.8 bits (224), Expect = 1e-23
 Identities = 38/168 (22%), Positives = 71/168 (42%), Gaps = 10/168 (5%)

Query: 15  FKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER 74
            ++ ++GD+  GKSSL+  F++ S   L  T    +  K + V G+   + I + AG   
Sbjct: 6   LRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQY-KKEMLVDGQTHLVLIREEAGAPD 64

Query: 75  FRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDL-YSTNQDCVKMLVGNKVDRD 133
            +     +   A  +I V+ +    +F  +S +  +   L           LVG +    
Sbjct: 65  AK-----FSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRIS 119

Query: 134 SE--RVVSREEGIALAKE-HGSLFLECSAKTRENVEQCFEQLALKIME 178
           +   RVV      AL  +     + E  A    NV++ F+++A K++ 
Sbjct: 120 ASSPRVVGDARARALCADMKRCSYYETCATYGLNVDRVFQEVAQKVVT 167

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

 Score = 88.2 bits (217), Expect = 1e-22
 Identities = 35/167 (20%), Positives = 60/167 (35%), Gaps = 8/167 (4%)

Query: 15  FKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER 74
            +IL++G  G GK+++L       V    PTIG + +        K LK  +WD  G   
Sbjct: 6   MRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETV----TYKNLKFQVWDLGGLTS 61

Query: 75  FRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDS 134
            R     YY     +I V D   R+            ++     +  + ++  NK D + 
Sbjct: 62  IRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAIL-VVFANKQDMEQ 120

Query: 135 ERVVS---REEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIME 178
               S      G+   K+      + SA     +++  E L   +  
Sbjct: 121 AMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKS 167

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} Length = 221

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 84.8 bits (209), Expect = 5e-21
 Identities = 28/194 (14%), Positives = 57/194 (29%), Gaps = 17/194 (8%)

Query: 11  YDLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTA 70
           Y  + ++LL+G    GKS+++          +  T G+            ++   ++D  
Sbjct: 3   YRATHRLLLLGAGESGKSTIVKQMRI---LHVVLTSGIFET----KFQVDKVNFHMFDVG 55

Query: 71  GQERFRTLTSSYYRGAQGIILVYDVTRRETFTNL---------SDVWAKEVDLYSTNQDC 121
           GQ   R      +     II V   +                 +    K +      +  
Sbjct: 56  GQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTI 115

Query: 122 VKMLVGNKVDRDSERVVSREEGIA-LAKEHGSLFLECSAKTRENVEQCFEQLALKIMEVP 180
             +L  NK D  +E+V++ +  I     E         A      +    +    I +  
Sbjct: 116 SVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEF 175

Query: 181 SLLEEGSNVVKRNI 194
             +   S   +   
Sbjct: 176 LRISTASGDGRHYC 189

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

 Score = 83.2 bits (204), Expect = 8e-21
 Identities = 33/163 (20%), Positives = 69/163 (42%), Gaps = 9/163 (5%)

Query: 15  FKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQE 73
            ++ L+G    GK++ +    S    +D+ PT+G + +     +    + + +WD  GQ 
Sbjct: 3   MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRK----ITKGNVTIKLWDIGGQP 58

Query: 74  RFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVD-- 131
           RFR++   Y RG   I+ + D   +E     S      +      Q    +++GNK D  
Sbjct: 59  RFRSMWERYCRGVSAIVYMVDAADQEKIEA-SKNELHNLLDKPQLQGIPVLVLGNKRDLP 117

Query: 132 -RDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLA 173
               E+ +  +  ++  ++        S K ++N++   + L 
Sbjct: 118 GALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLI 160

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 80.0 bits (196), Expect = 3e-19
 Identities = 30/199 (15%), Positives = 58/199 (29%), Gaps = 40/199 (20%)

Query: 15  FKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER 74
            K+LL+G    GKS+ +          + PT G+           + +   + D  GQ  
Sbjct: 3   LKLLLLGTGESGKSTFIKQMRIIHGSGV-PTTGIIEY----PFDLQSVIFRMVDVGGQRS 57

Query: 75  FRTLTSSYYRGAQGIILVYDVTRRETF------TNLSDVWAKEVD---LYSTNQDCVKML 125
            R      +     I+ +  ++  +         N  +           Y   Q+   +L
Sbjct: 58  ERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVIL 117

Query: 126 VGNKVDRDSERVVSREEGIALAKEHG-------------SLFL-------------ECSA 159
             NK D   E+++         +  G              +F+                A
Sbjct: 118 FLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCA 177

Query: 160 KTRENVEQCFEQLALKIME 178
              EN+   F  +   I++
Sbjct: 178 TDTENIRFVFAAVKDTILQ 196

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 77.8 bits (190), Expect = 1e-18
 Identities = 30/178 (16%), Positives = 58/178 (32%), Gaps = 20/178 (11%)

Query: 14  SFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQE 73
           + K++ +G    GK++LL       +    PT+    +     +    +  T +D  G  
Sbjct: 13  TGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSE----ELTIAGMTFTTFDLGGHI 68

Query: 74  RFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRD 133
           + R +  +Y     GI+ + D    E      +     +    T  +   +++GNK+DR 
Sbjct: 69  QARRVWKNYLPAINGIVFLVDCADHERLLESKE-ELDSLMTDETIANVPILILGNKIDRP 127

Query: 134 SERVVSR---------------EEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKI 176
                 R                  +            CS   R+   + F  +A  I
Sbjct: 128 EAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI 185

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 78.0 bits (191), Expect = 1e-18
 Identities = 28/168 (16%), Positives = 49/168 (29%), Gaps = 17/168 (10%)

Query: 15  FKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER 74
            KILL+G    GKS+ L       +    PT G+           K +   + D  GQ  
Sbjct: 3   VKILLLGAGESGKSTFLKQM--RIIHGQDPTKGIHEY----DFEIKNVPFKMVDVGGQRS 56

Query: 75  FRTLTSSYYRGAQGIILVYDVTRRETFTNL---------SDVWAKEVDLYSTNQDCVKML 125
            R      +     I+ +   +  +              S    + +       +   +L
Sbjct: 57  ERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIIL 116

Query: 126 VGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLA 173
             NK D   E+V          +  G        +  + + +CF    
Sbjct: 117 FLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQ--KFLVECFRGKR 162

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 207

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 71.2 bits (173), Expect = 6e-16
 Identities = 29/197 (14%), Positives = 56/197 (28%), Gaps = 15/197 (7%)

Query: 16  KILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERF 75
            +L +G    GK+ L V  ++    D   +I     I  +          I     +   
Sbjct: 2   AVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESLR 61

Query: 76  RTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEV--DLYSTNQDCVKMLVGNKVDRD 133
             L   +   A+ ++ V D    +        +  +V  D  +       ++  NK D  
Sbjct: 62  FQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIA 121

Query: 134 SERVVS-------------REEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIMEVP 180
             +                R    A      S     +   ++  E  F QL LK+  + 
Sbjct: 122 MAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLE 181

Query: 181 SLLEEGSNVVKRNILKQ 197
              + G        ++ 
Sbjct: 182 CSAKGGRGDTGSADIQD 198

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 195

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 70.4 bits (171), Expect = 9e-16
 Identities = 31/199 (15%), Positives = 56/199 (28%), Gaps = 43/199 (21%)

Query: 15  FKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER 74
            K+LL+G    GKS+++               G+           K L   ++D  GQ  
Sbjct: 3   VKLLLLGAGESGKSTIVKQM----KIIHEAGTGIVET----HFTFKDLHFKMFDVGGQRS 54

Query: 75  FRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLY---------STNQDCVKML 125
            R      + G   II    ++  +      +   +  +               D   +L
Sbjct: 55  ERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIIL 114

Query: 126 VGNKVDRDSERVVSREEGIALAKEHGSLFL--------------------------ECSA 159
             NK D   E++      I   +  GS                                A
Sbjct: 115 FLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCA 174

Query: 160 KTRENVEQCFEQLALKIME 178
              +NV+  F+ +   I++
Sbjct: 175 TDTKNVQFVFDAVTDVIIK 193

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} Length = 180

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

 Score = 54.7 bits (130), Expect = 4e-10
 Identities = 23/168 (13%), Positives = 44/168 (26%), Gaps = 4/168 (2%)

Query: 17  ILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQ---- 72
           + L+G    GKSSLL +   +                 +    +  + T+ D  G     
Sbjct: 4   VGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGA 63

Query: 73  ERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDR 132
              + L   + R      ++  V         +    ++           +  +      
Sbjct: 64  SEGKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKV 123

Query: 133 DSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIMEVP 180
           D     + +         G   L  SA T   +    E L   +   P
Sbjct: 124 DLLEEEAVKALADALAREGLAVLPVSALTGAGLPALKEALHALVRSTP 171

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} Length = 161

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

 Score = 53.2 bits (126), Expect = 9e-10
 Identities = 24/159 (15%), Positives = 49/159 (30%), Gaps = 2/159 (1%)

Query: 15  FKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER 74
            K+++ G    GKSSLL +        ++   G    +    +    + L I DTAG   
Sbjct: 2   MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRE 61

Query: 75  FRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDS 134
                           +             +       +++      +   +   V R+ 
Sbjct: 62  ASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNK 121

Query: 135 ERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLA 173
             +        +++ +G   +  SA+T E V+     L 
Sbjct: 122 ADITGETL--GMSEVNGHALIRLSARTGEGVDVLRNHLK 158

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 209

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.8 bits (120), Expect = 1e-08
 Identities = 34/199 (17%), Positives = 64/199 (32%), Gaps = 20/199 (10%)

Query: 17  ILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFR 76
           I++ G    GK+SLL    + SV    PT+     +      G    +T+ D  G  + R
Sbjct: 6   IIIAGPQNSGKTSLLTLLTTDSV---RPTVVSQEPLSAADYDGSG--VTLVDFPGHVKLR 60

Query: 77  TLTSSYY-----RGAQGIILVYDVTRRETFTNLSDVWAK--EVDLYSTNQDCVKMLVGNK 129
              S Y           I +V      +  T  ++       +   S       ++  NK
Sbjct: 61  YKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNK 120

Query: 130 VDRDSERVVSRE--------EGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIMEVPS 181
            +  + R  S+         + +   ++     +E      +  E   + L        +
Sbjct: 121 SELFTARPPSKIKDALESEIQKVIERRKKSLNEVERKINEEDYAENTLDVLQSTDGFKFA 180

Query: 182 LLEEGSNVVKRNILKQKPE 200
            LE      + +I K+K  
Sbjct: 181 NLEASVVAFEGSINKRKIS 199

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} Length = 178

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

 Score = 48.2 bits (113), Expect = 7e-08
 Identities = 29/174 (16%), Positives = 50/174 (28%), Gaps = 2/174 (1%)

Query: 14  SFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQE 73
           S  + ++G   VGKS+LL + +   V  +SP      K     +   R ++   DT G  
Sbjct: 5   SGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLH 64

Query: 74  RFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRD 133
           +       +        L                  ++  +    +  V  +    V   
Sbjct: 65  KPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNK 124

Query: 134 SERVVSREEGIALAKEHGSL--FLECSAKTRENVEQCFEQLALKIMEVPSLLEE 185
            +     EE +    E          SA     V +    L   + E P    E
Sbjct: 125 LDAAKYPEEAMKAYHELLPEAEPRMLSALDERQVAELKADLLALMPEGPFFYPE 178

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

 Score = 45.1 bits (105), Expect = 1e-06
 Identities = 29/174 (16%), Positives = 53/174 (30%), Gaps = 11/174 (6%)

Query: 14  SFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQE 73
           + K+ ++G   VGKS+L  + ++     +SP  G         V     K    DTAG  
Sbjct: 8   AIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLR 67

Query: 74  RFRTLTSSYYRGAQGI----------ILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVK 123
           R   +                     ++V  +   +  T      A  ++        V 
Sbjct: 68  RKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRASVVVF 127

Query: 124 MLVGNKVDRDSERVVSREEGIA-LAKEHGSLFLECSAKTRENVEQCFEQLALKI 176
                 V R+       +     L     S  +  SA    N+++  + + L  
Sbjct: 128 NKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMIDAMNLAY 181

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

 Score = 44.6 bits (104), Expect = 1e-06
 Identities = 28/166 (16%), Positives = 59/166 (35%), Gaps = 20/166 (12%)

Query: 16  KILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAG---- 71
           +++++G   VGKS+LL   ++     ++   G    +    +  + +   I DTAG    
Sbjct: 2   RMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSE 61

Query: 72  -----QERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLV 126
                +      T      A  ++ V D +      +   +           ++   ++V
Sbjct: 62  TNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKILE--------RIKNKRYLVV 113

Query: 127 GNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQL 172
            NKVD   +      +       H    ++ SA   E +E+  E +
Sbjct: 114 INKVDVVEKINEEEIKNKLGTDRH---MVKISALKGEGLEKLEESI 156

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} Length = 188

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

 Score = 44.0 bits (102), Expect = 3e-06
 Identities = 22/171 (12%), Positives = 56/171 (32%), Gaps = 9/171 (5%)

Query: 12  DLSFKILLIGDSGVGKSSLLVSFIS---SSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWD 68
           D   ++   G S  GKSS L +  +    +    +P       +  +    + + L  + 
Sbjct: 14  DTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYG 73

Query: 69  T-----AGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVK 123
                   + +++     Y    Q +  +  +          D    E  + S     V 
Sbjct: 74  YAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVL 133

Query: 124 MLVGNKVDRDSERVVSREEGIALAKEHGSL-FLECSAKTRENVEQCFEQLA 173
           +   +K+   + +        A+   +G +     S+  ++ V++  ++L 
Sbjct: 134 LTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLD 184

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 257

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

 Score = 42.9 bits (100), Expect = 9e-06
 Identities = 33/197 (16%), Positives = 61/197 (30%), Gaps = 24/197 (12%)

Query: 14  SFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAG-- 71
           S  IL++G  GVGKSS + S I   V  +SP      +  +++ +     L I DT G  
Sbjct: 32  SLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLI 91

Query: 72  ---------QERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCV 122
                        ++           ++ V  +           V     D +       
Sbjct: 92  EGGYINDMALNIIKSFLLDK--TIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNK 149

Query: 123 KMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQC-FEQLALKIMEVPS 181
            ++            +  +E           F + S    + V      +   +  ++P 
Sbjct: 150 AIVALTHAQFSPPDGLPYDE----------FFSKRSEALLQVVRSGASLKKDAQASDIPV 199

Query: 182 LLEEGSNVVKRNILKQK 198
           +L E S    +N   +K
Sbjct: 200 VLIENSGRCNKNDSDEK 216

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 41.6 bits (96), Expect = 1e-05
 Identities = 24/176 (13%), Positives = 51/176 (28%), Gaps = 11/176 (6%)

Query: 17  ILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFR 76
           I ++G   VGKS+LL   +   +   S          +        +    DT G     
Sbjct: 8   IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEE 67

Query: 77  TLT-------SSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNK 129
                     ++        ++++ V       +   V  K        +  V + V   
Sbjct: 68  KRAINRLMNKAASSSIGDVELVIFVVEGTRWTPDDEMVLNK----LREGKAPVILAVNKV 123

Query: 130 VDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIMEVPSLLEE 185
            +   +  +        ++ +    +  SA+T  NV+     +   + E      E
Sbjct: 124 DNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHLPEATHHFPE 179

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

 Score = 40.9 bits (94), Expect = 3e-05
 Identities = 28/168 (16%), Positives = 48/168 (28%), Gaps = 11/168 (6%)

Query: 17  ILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFR 76
           +L++G   VGKS+L    +      +    GV       TV        + DT G     
Sbjct: 3   VLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNP 62

Query: 77  TLTSSYYRGAQGII------LVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKV 130
               S       +       LV  V   +      D    +    ST    +       +
Sbjct: 63  QDIISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENL 122

Query: 131 DRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIME 178
                 V      +   +      +  SA+   N++   E +  K+ E
Sbjct: 123 REFEREVKPELYSLGFGE-----PIPVSAEHNINLDTMLETIIKKLEE 165

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} Length = 400

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.9 bits (95), Expect = 5e-05
 Identities = 22/156 (14%), Positives = 42/156 (26%), Gaps = 9/156 (5%)

Query: 15  FKILLIGDSGVGKSSLLVSFISSSVDD-LSPTIGVDFKIKLLTVA--GKRLKLTIWDTAG 71
             + + G++G GKSS + +      ++  +   GV                 +  WD  G
Sbjct: 57  LNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPG 116

Query: 72  QERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVD 131
                    +Y    +     YD     + T             S  +      V  KVD
Sbjct: 117 IGSTNFPPDTYL--EKMKFYEYDFFIIISATRFKKNDIDIAKAISMMKKEF-YFVRTKVD 173

Query: 132 RDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQ 167
            D     +  +G     +   +  +          +
Sbjct: 174 SDIT---NEADGEPQTFDKEKVLQDIRLNCVNTFRE 206

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} Length = 185

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

 Score = 38.8 bits (89), Expect = 1e-04
 Identities = 22/173 (12%), Positives = 45/173 (26%), Gaps = 10/173 (5%)

Query: 17  ILLIGDSGVGKSSLLVSFISSSVDDLS-PTIGVDFKIKLLTVAGKRLKLTIWDTAG---- 71
           + L+G   VGKS+LL    S+           +   + ++     R    + D  G    
Sbjct: 4   VGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGR-SFVMADLPGLIEG 62

Query: 72  ----QERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVG 127
                           R    + ++              +   +       +   +  + 
Sbjct: 63  AHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQII 122

Query: 128 NKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIMEVP 180
                D        E               SA TRE + +   ++A ++   P
Sbjct: 123 VANKMDMPEAAENLEAFKEKLTDDYPVFPISAVTREGLRELLFEVANQLENTP 175

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} Length = 195

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

 Score = 37.0 bits (84), Expect = 6e-04
 Identities = 24/169 (14%), Positives = 52/169 (30%), Gaps = 14/169 (8%)

Query: 16  KILLIGDSGVGKSSLL-----------VSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKL 64
           +I L G S VGKSS +            S        L+  I  D    +        K+
Sbjct: 25  EIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIINDELHFVDVPGYGFAKV 84

Query: 65  TIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKM 124
           +  +     R      +     + ++ + D+    +  ++      +           K 
Sbjct: 85  SKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKA 144

Query: 125 LVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLA 173
               K   D    V R+    L  +     +  S++T++  ++ +  + 
Sbjct: 145 DKIPKGKWDKHAKVVRQT---LNIDPEDELILFSSETKKGKDEAWGAIK 190

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	211
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	100.0
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	100.0
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	100.0
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	100.0
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	100.0
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	100.0
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	100.0
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	100.0
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	100.0
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	100.0
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	100.0
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	100.0
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	100.0
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	100.0
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	100.0
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	100.0
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	99.98
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.98
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.97
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.96
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.95
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.95
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	99.94
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.94
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	99.93
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	99.92
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.92
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	99.92
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	99.91
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	99.91
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	99.9
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	99.9
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	99.9
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	99.89
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.89
d2fh5b1	207	Signal recognition particle receptor beta-subunit	99.87
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	99.86
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	99.86
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	99.86
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	99.86
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	99.85
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	99.84
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	99.84
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.84
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.79
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	99.76
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	99.74
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	99.73
d1nrjb_	209	Signal recognition particle receptor beta-subunit	99.72
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	99.69
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	99.68
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	99.68
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	99.68
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	99.62
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	99.62
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	99.53
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	99.43
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	99.42
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	99.4
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	99.32
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	99.28
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	99.08
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	98.97
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	98.96
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	98.88
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.68
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	98.39
d1j8yf2	211	GTPase domain of the signal sequence recognition p	98.32
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.3
d1vmaa2	213	GTPase domain of the signal recognition particle r	98.3
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	98.29
d2qy9a2	211	GTPase domain of the signal recognition particle r	98.26
d1okkd2	207	GTPase domain of the signal recognition particle r	98.2
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	98.15
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	98.14
d1ls1a2	207	GTPase domain of the signal sequence recognition p	98.13
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	97.86
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	97.84
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	97.76
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.7
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	97.68
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.68
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	97.61
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	97.6
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.58
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	97.57
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	97.55
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	97.52
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	97.49
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	97.48
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	97.46
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	97.46
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	97.46
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	97.44
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	97.43
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	97.42
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	97.35
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	97.32
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	97.3
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	97.28
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	97.28
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	97.26
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	97.23
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	97.21
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	97.2
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	97.19
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	97.18
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	97.18
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	97.17
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	97.16
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	97.15
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	97.14
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	97.14
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	97.12
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	97.11
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	97.11
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	97.1
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	97.09
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	97.09
d2awna2	232	Maltose transport protein MalK, N-terminal domain	97.08
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	97.08
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	97.07
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	97.05
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	97.04
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	97.04
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	97.04
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	97.03
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	97.01
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	96.99
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	96.98
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	96.96
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	96.93
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	96.93
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	96.92
d1g2912	240	Maltose transport protein MalK, N-terminal domain	96.92
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	96.9
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	96.89
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	96.88
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	96.86
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	96.85
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	96.85
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	96.84
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	96.83
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	96.79
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	96.75
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	96.73
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	96.71
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	96.67
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	96.67
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	96.67
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	96.65
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	96.64
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	96.64
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	96.62
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	96.59
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	96.56
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	96.45
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	96.43
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	96.4
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	96.39
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	96.38
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	96.36
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	96.29
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	96.27
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	96.26
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	96.23
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	96.23
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.18
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	96.17
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	96.14
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	95.99
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	95.96
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	95.91
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	95.77
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	95.74
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	95.73
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	95.63
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	95.61
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	95.55
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	95.54
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	95.47
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	95.44
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	95.39
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	95.31
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	95.22
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	95.14
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	95.1
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	95.09
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	95.09
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	95.08
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	95.05
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	95.05
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	95.04
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	95.04
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	95.02
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	94.99
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	94.92
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	94.76
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	94.75
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	94.7
d1tuea_	205	Replication protein E1 helicase domain {Human papi	94.69
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	94.68
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	94.62
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	94.61
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	94.61
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	94.52
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	94.52
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	94.39
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	94.32
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	94.11
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	94.05
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	93.55
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	93.55
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	93.46
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	93.37
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	93.23
d1xpua3	289	Transcription termination factor Rho, ATPase domai	93.22
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	92.69
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	92.32
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	91.78
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	91.26
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	91.09
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	90.39
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	89.33
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	89.09
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	89.08
d1c9ka_	180	Adenosylcobinamide kinase/adenosylcobinamide phosp	87.6
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	87.44
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	87.35
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	87.18
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	86.65
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	86.64
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	86.6
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	86.31
d1ii2a1	323	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	85.92
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	85.62
g1qhh.1	623	DEXX box DNA helicase {Bacillus stearothermophilus	85.23
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	85.06
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	84.74
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	84.66
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	83.6
d1zpda1	175	Pyruvate decarboxylase {Zymomonas mobilis [TaxId:	82.51
d2b8ta1	139	Thymidine kinase, TK1, N-terminal domain {Ureaplas	81.6
d1xx6a1	141	Thymidine kinase, TK1, N-terminal domain {Clostrid	80.21

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.2e-37  Score=216.85  Aligned_cols=164  Identities=29%  Similarity=0.371  Sum_probs=132.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEEEEE
Q 028300           15 FKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYD   94 (211)
Q Consensus        15 ~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d   94 (211)
                      +||+++|++|||||||+++|.+..+....++.+..+ ...+.+++..+.+.+||++|++.+..++..+++.+|++|+|||
T Consensus         2 fKi~lvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~~d~~ilv~d   80 (168)
T d2gjsa1           2 YKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTY-DRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYS   80 (168)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTC---------CEEE-EEEEEETTEEEEEEEEECC-------CHHHHHTSCSEEEEEEE
T ss_pred             eEEEEECCCCcCHHHHHHHHhCCccCCcCCeeeeee-cceeeccccccceeeeecccccccceecccchhhhhhhceecc
Confidence            799999999999999999999887766655555544 4567788999999999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHHHHHHH
Q 028300           95 VTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLAL  174 (211)
Q Consensus        95 ~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~  174 (211)
                      ++++.+++++.. |...+........+|+++|+||+|+.+.+++...++..++..++++|++|||++|.||+++|.+|++
T Consensus        81 ~t~~~s~~~~~~-~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~v~~~f~~l~~  159 (168)
T d2gjsa1          81 VTDKGSFEKASE-LRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVR  159 (168)
T ss_dssp             TTCHHHHHHHHH-HHHHHHHHCC--CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHHHHHHH
T ss_pred             cccccccccccc-ccchhhcccccccceEEEeecccchhhhcchhHHHHHHHHHhcCCEEEEEeCCCCcCHHHHHHHHHH
Confidence            999999999988 7777765545678899999999999888888999999999999999999999999999999999999


Q ss_pred             HHHhcc
Q 028300          175 KIMEVP  180 (211)
Q Consensus       175 ~~~~~~  180 (211)
                      .+...+
T Consensus       160 ~i~~~~  165 (168)
T d2gjsa1         160 QIRLRR  165 (168)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            887654

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=7.5e-37  Score=214.30  Aligned_cols=166  Identities=49%  Similarity=0.822  Sum_probs=150.7

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEE
Q 028300           11 YDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGI   89 (211)
Q Consensus        11 ~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~   89 (211)
                      ++..+||+++|++|||||||+++|..+.+ ..+.++.+.+.....+......+.+.+||+||++++..++..+++.+|++
T Consensus         2 ~~~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~wDt~G~e~~~~~~~~~~~~ad~~   81 (169)
T d3raba_           2 FDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGF   81 (169)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTTTTCCEE
T ss_pred             CCeEEEEEEECCCCcCHHHHHHHHHcCCCCcccccccccceeeEEEEeecceEEEEEEECCCchhhHHHHHHHHhcCCEE
Confidence            56789999999999999999999999988 67788888888888888899999999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHH
Q 028300           90 ILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCF  169 (211)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~  169 (211)
                      |+|||+++++++..+.. |....... .....|+++|+||.|+.+...+..++++.+++.++++|++|||++|.||+++|
T Consensus        82 ilv~d~~~~~s~~~~~~-~~~~~~~~-~~~~~~iivv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f  159 (169)
T d3raba_          82 ILMYDITNEESFNAVQD-WSTQIKTY-SWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTF  159 (169)
T ss_dssp             EEEEETTCHHHHHTHHH-HHHHHHHH-CCSCCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHH
T ss_pred             EEEEECccchhhhhhhh-hhhhhhcc-cCCcceEEEEEeecccccccccchhhhHHHHHHcCCEEEEecCCCCcCHHHHH
Confidence            99999999999999988 55555443 46689999999999998888888999999999999999999999999999999


Q ss_pred             HHHHHHHHh
Q 028300          170 EQLALKIME  178 (211)
Q Consensus       170 ~~i~~~~~~  178 (211)
                      ++|++.+.+
T Consensus       160 ~~l~~~i~e  168 (169)
T d3raba_         160 ERLVDVICE  168 (169)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHhh
Confidence            999998875

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.8e-37  Score=214.71  Aligned_cols=169  Identities=33%  Similarity=0.495  Sum_probs=148.1

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEE
Q 028300           11 YDLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGII   90 (211)
Q Consensus        11 ~~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (211)
                      -...+||+|+|.+|||||||+++|..+.+.........+.....+.+++..+.+.+||++|..++...+..+++++|+++
T Consensus         3 ~~~~~Kv~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~i   82 (173)
T d2fn4a1           3 PSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFL   82 (173)
T ss_dssp             SSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEE
T ss_pred             CCCeEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEeccCCeeeeeeccccccccccccccchhhccceeee
Confidence            35679999999999999999999999998443333345555677888999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHHH
Q 028300           91 LVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFE  170 (211)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~  170 (211)
                      +|||++++.+++.+.. |...+.......+.|+++|+||+|+...+.+..+++..++..++++|++|||++|.||+++|+
T Consensus        83 ~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f~  161 (173)
T d2fn4a1          83 LVFAINDRQSFNEVGK-LFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFE  161 (173)
T ss_dssp             EEEETTCHHHHHHHHH-HHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHH
T ss_pred             eecccccccccchhhh-hhHHHHHHhccCCCceEEEEEeechhhccccchhhhhHHHHhcCCEEEEEeCCCCcCHHHHHH
Confidence            9999999999999988 666655444567899999999999987778888999999999999999999999999999999


Q ss_pred             HHHHHHHhcc
Q 028300          171 QLALKIMEVP  180 (211)
Q Consensus       171 ~i~~~~~~~~  180 (211)
                      +|++.+.+.+
T Consensus       162 ~l~~~i~k~~  171 (173)
T d2fn4a1         162 QLVRAVRKYQ  171 (173)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHh
Confidence            9999887654

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=4.2e-37  Score=214.62  Aligned_cols=162  Identities=37%  Similarity=0.601  Sum_probs=149.5

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEEE
Q 028300           14 SFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILV   92 (211)
Q Consensus        14 ~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (211)
                      .+||+++|++|||||||+++|..+.+ ..+.++.+.+.........+..+.+.+||++|+.++..++..+++.+|++++|
T Consensus         2 ~iKv~liG~~~vGKSsLi~rl~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v   81 (164)
T d1z2aa1           2 AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLV   81 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccceeeeeecCceeeeeeeccCCccchhhhhhhhhccCceEEEE
Confidence            68999999999999999999999988 67788899888888888899999999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHHHHH
Q 028300           93 YDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQL  172 (211)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i  172 (211)
                      ||++++++++++.. |.+.+..+  ..++|+++|+||+|+.+.+.+..++++.+++.++++|+++||++|.||+++|++|
T Consensus        82 ~d~~~~~s~~~~~~-~~~~i~~~--~~~~~iilVgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~l  158 (164)
T d1z2aa1          82 FSTTDRESFEAISS-WREKVVAE--VGDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYL  158 (164)
T ss_dssp             EETTCHHHHHTHHH-HHHHHHHH--HCSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHH
T ss_pred             Eeccchhhhhhccc-cccccccc--CCCceEEEeeccCCcccceeeeehhhHHHHHHcCCEEEEeccCCCcCHHHHHHHH
Confidence            99999999999987 88877655  4579999999999998888889999999999999999999999999999999999


Q ss_pred             HHHHHh
Q 028300          173 ALKIME  178 (211)
Q Consensus       173 ~~~~~~  178 (211)
                      ++++++
T Consensus       159 ~~~~lq  164 (164)
T d1z2aa1         159 AEKHLQ  164 (164)
T ss_dssp             HHHHHC
T ss_pred             HHHHhC
Confidence            998763

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-36  Score=212.46  Aligned_cols=164  Identities=37%  Similarity=0.515  Sum_probs=147.2

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEE
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGII   90 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (211)
                      .+.+||+|+|++|||||||+++|..+.+ ..+.++.+..+ ...+.+++..+.+.+||++|...+..+...++..+|+++
T Consensus         2 ~k~~Kv~liG~~~vGKTsLl~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~d~~i   80 (167)
T d1xtqa1           2 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYI   80 (167)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCSSCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTSSCCEEE
T ss_pred             CcceEEEEECCCCcCHHHHHHHHHhCCCCcccCcceeccc-ceEEecCcEEEEeeecccccccccccccchhhhhhhhhh
Confidence            4678999999999999999999999888 56677777765 456788999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHHH
Q 028300           91 LVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFE  170 (211)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~  170 (211)
                      +|||++++++++.+.. |...+.......++|+++|+||+|+...+.+..++++.+++.++++|++|||++|.||+++|.
T Consensus        81 lv~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~  159 (167)
T d1xtqa1          81 LVYSVTSIKSFEVIKV-IHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFR  159 (167)
T ss_dssp             EEEETTCHHHHHHHHH-HHHHHHHHHCSSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHHH
T ss_pred             hhcccchhhhhhhhhh-hhhhhhhcccccccceeeeccccccccccchhHHHHHHHHHHcCCEEEEEecCCCCCHHHHHH
Confidence            9999999999999988 666665554667899999999999988888999999999999999999999999999999999


Q ss_pred             HHHHHHH
Q 028300          171 QLALKIM  177 (211)
Q Consensus       171 ~i~~~~~  177 (211)
                      .|++.+.
T Consensus       160 ~li~~~~  166 (167)
T d1xtqa1         160 RIILEAE  166 (167)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHhc
Confidence            9998775

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-36  Score=212.79  Aligned_cols=167  Identities=44%  Similarity=0.789  Sum_probs=150.5

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEE
Q 028300           11 YDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGI   89 (211)
Q Consensus        11 ~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~   89 (211)
                      ++..+||+++|++|||||||+++|..+.+ ....++.+.++....+.+.+..+.+.+||++|++.+..++..+++++|++
T Consensus         2 ~~~~~Ki~lvG~~~vGKTsLi~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~~~~   81 (171)
T d2ew1a1           2 YDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANAL   81 (171)
T ss_dssp             CSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEE
T ss_pred             CCEEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhccceE
Confidence            56789999999999999999999999998 66778888888888889999999999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHH
Q 028300           90 ILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCF  169 (211)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~  169 (211)
                      ++|||++++.++..+.. |...+... ....+|+++|+||+|+.+...+..+++..++..++++|++|||++|.||+++|
T Consensus        82 i~v~d~~~~~s~~~~~~-~~~~i~~~-~~~~~~~ilvgnK~D~~~~~~v~~~~~~~~~~~~~~~~~~~SAktg~gV~e~f  159 (171)
T d2ew1a1          82 ILTYDITCEESFRCLPE-WLREIEQY-ASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLF  159 (171)
T ss_dssp             EEEEETTCHHHHHTHHH-HHHHHHHH-SCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHH
T ss_pred             EEeeecccchhhhhhhh-hhhhhccc-ccccccEEEEEeecccccccchhhhHHHHHHHhCCCEEEEEccCCCCCHHHHH
Confidence            99999999999999998 55554433 45689999999999998888888899999999999999999999999999999


Q ss_pred             HHHHHHHHhc
Q 028300          170 EQLALKIMEV  179 (211)
Q Consensus       170 ~~i~~~~~~~  179 (211)
                      .+|++++.+.
T Consensus       160 ~~l~~~l~~~  169 (171)
T d2ew1a1         160 LDLACRLISE  169 (171)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999887654

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-36  Score=211.99  Aligned_cols=164  Identities=39%  Similarity=0.697  Sum_probs=143.1

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEE
Q 028300           13 LSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIIL   91 (211)
Q Consensus        13 ~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   91 (211)
                      ..+||+|+|.+|||||||+++|..+.| +.+.++.+..........++..+.+.+||++|+.++..++..+++++|++++
T Consensus         2 y~fKivlvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~   81 (167)
T d1z08a1           2 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAIL   81 (167)
T ss_dssp             EEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEEE
T ss_pred             ceEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccchheeeeccCCccceeeeeccCCcceecccchhhccCCceeEE
Confidence            468999999999999999999999998 6788888988988888888899999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHHHH
Q 028300           92 VYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQ  171 (211)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~  171 (211)
                      |||+++++||+.+.. |...+... .....|+++|+||+|+...+.+..++++.+++.++++|++|||++|.||+++|.+
T Consensus        82 v~d~~~~~Sf~~~~~-~~~~~~~~-~~~~~~~ilvgnK~Dl~~~~~v~~~e~~~~a~~~~~~~~e~Sak~~~~v~e~F~~  159 (167)
T d1z08a1          82 VYDITDEDSFQKVKN-WVKELRKM-LGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLD  159 (167)
T ss_dssp             EEETTCHHHHHHHHH-HHHHHHHH-HGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHH
T ss_pred             EEeCCchhHHHhhhh-hhhhcccc-cccccceeeeccccccccccccchHHHHHHHHHcCCeEEEEecCCCcCHHHHHHH
Confidence            999999999999998 55555433 3567899999999999888889999999999999999999999999999999999


Q ss_pred             HHHHHHh
Q 028300          172 LALKIME  178 (211)
Q Consensus       172 i~~~~~~  178 (211)
                      |++++.+
T Consensus       160 l~~~i~~  166 (167)
T d1z08a1         160 LCKRMIE  166 (167)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHhh
Confidence            9998864

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=100.00  E-value=2.8e-36  Score=211.14  Aligned_cols=163  Identities=32%  Similarity=0.569  Sum_probs=144.1

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEEE
Q 028300           14 SFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILV   92 (211)
Q Consensus        14 ~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (211)
                      -+||+|+|++|||||||+++|..+.| ..+.+|.+..+. ..+.+++..+.+.+||++|+.++..++..+++++|++++|
T Consensus         4 ~~KivlvG~~~vGKTsli~~~~~~~f~~~~~~T~~~~~~-~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~ilv   82 (168)
T d1u8za_           4 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCV   82 (168)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEE-EEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEE
T ss_pred             eeEEEEECCCCcCHHHHHHHHHhCCCCcccCCccccccc-cccccccccccccccccccccchhhhhhhcccccceeEEE
Confidence            47999999999999999999999998 667778776654 5667889999999999999999988899999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHHHHH
Q 028300           93 YDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQL  172 (211)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i  172 (211)
                      ||++++++++.+.. |...+.......++|+++|+||+|+.+.+.+..++++.++..++++|++|||++|.||+++|.+|
T Consensus        83 ~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piiivgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f~~l  161 (168)
T d1u8za_          83 FSITEMESFAATAD-FREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDL  161 (168)
T ss_dssp             EETTCHHHHHHHHH-HHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHH
T ss_pred             eeccchhhhhhHHH-HHHHHHHhhCCCCCcEEEEeccccccccccccHHHHHHHHHHcCCeEEEEcCCCCcCHHHHHHHH
Confidence            99999999999988 77777655466789999999999998888899999999999999999999999999999999999


Q ss_pred             HHHHHh
Q 028300          173 ALKIME  178 (211)
Q Consensus       173 ~~~~~~  178 (211)
                      ++.+..
T Consensus       162 ~~~i~~  167 (168)
T d1u8za_         162 MREIRA  167 (168)
T ss_dssp             HHHHHT
T ss_pred             HHHHHC
Confidence            998764

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.8e-36  Score=208.82  Aligned_cols=163  Identities=51%  Similarity=0.837  Sum_probs=148.3

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEE
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGII   90 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (211)
                      +..+||+++|++|||||||++++.++.+ ..+.++.+.++.......++..+.+.+||++|++.+..++..+++.+|+++
T Consensus         2 ~y~~KivlvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~d~~i   81 (166)
T d1z0fa1           2 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGAL   81 (166)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEE
T ss_pred             cEEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccccceeEEEEECCEEEEEEEeccCCchhHHHHHHHHhcCCcEEE
Confidence            5679999999999999999999999998 566778888888888899999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHHH
Q 028300           91 LVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFE  170 (211)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~  170 (211)
                      +|||+++.+++..+.. |...+... .....|+++++||+|+.....+..+++..+++.++++|++|||++|.||+++|.
T Consensus        82 lv~d~~~~~s~~~~~~-~~~~~~~~-~~~~~~iilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Saktg~~v~e~f~  159 (166)
T d1z0fa1          82 MVYDITRRSTYNHLSS-WLTDARNL-TNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFL  159 (166)
T ss_dssp             EEEETTCHHHHHTHHH-HHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHH
T ss_pred             EEeccCchHHHHHHHH-HHHHHHhh-ccccceEEEEcccccchhhcccHHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence            9999999999999988 55555543 467889999999999988888888899999999999999999999999999999


Q ss_pred             HHHHHH
Q 028300          171 QLALKI  176 (211)
Q Consensus       171 ~i~~~~  176 (211)
                      +|++.+
T Consensus       160 ~i~~~i  165 (166)
T d1z0fa1         160 EAAKKI  165 (166)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            999876

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.1e-35  Score=208.18  Aligned_cols=165  Identities=31%  Similarity=0.524  Sum_probs=146.3

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEE
Q 028300           13 LSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIIL   91 (211)
Q Consensus        13 ~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   91 (211)
                      ..+||+++|++|||||||++++.++.+ ..+.++.+..+ ...+..++..+.+.+||++|...+...+..+++.+|++++
T Consensus         3 pt~Ki~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ll   81 (169)
T d1x1ra1           3 PTYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLI   81 (169)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSSCCTTCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEE
T ss_pred             CcEEEEEECCCCcCHHHHHHHHHhCCCCcccCcceeecc-ccccccccccccccccccccccccccchhhhhhhccEEEE
Confidence            369999999999999999999999988 55666665444 4566778999999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCC-cHHHHHH
Q 028300           92 VYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRE-NVEQCFE  170 (211)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~-gv~~l~~  170 (211)
                      |||+++++|++++.. |...+.......++|+++|+||+|+...+.+..+++.++++.++++|+++||+++. ||+++|.
T Consensus        82 v~d~~d~~Sf~~~~~-~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~v~~e~~~~~~~~~~~~~~e~Sak~~~~nV~~~F~  160 (169)
T d1x1ra1          82 VYSVTDKASFEHVDR-FHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFH  160 (169)
T ss_dssp             EEETTCHHHHHTHHH-HHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHHHHH
T ss_pred             ecccccchhhhccch-hhHHHHhhccccCccEEEEecccchhhhceeehhhHHHHHHHcCCEEEEEcCCCCCcCHHHHHH
Confidence            999999999999988 77766555456789999999999998888899999999999999999999999876 9999999


Q ss_pred             HHHHHHHhc
Q 028300          171 QLALKIMEV  179 (211)
Q Consensus       171 ~i~~~~~~~  179 (211)
                      .|++.+.++
T Consensus       161 ~l~~~i~~~  169 (169)
T d1x1ra1         161 DLVRVIRQQ  169 (169)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHHhC
Confidence            999988753

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2e-36  Score=212.53  Aligned_cols=165  Identities=28%  Similarity=0.474  Sum_probs=141.7

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEE
Q 028300           13 LSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIIL   91 (211)
Q Consensus        13 ~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   91 (211)
                      +++||+++|.+|||||||+++|+.+.+ ..+.+|.+..+. .....++..+.+.+||++|.+.+......+++.+|++++
T Consensus         1 n~~Ki~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~~~~~-~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~il   79 (171)
T d2erxa1           1 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYR-QVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFIL   79 (171)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEE-EEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhCCCCCccCcceeeccc-cceeeccccceeccccccccccccccccccccceeEEEE
Confidence            479999999999999999999999988 566777775543 455778889999999999999999989999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHHHH
Q 028300           92 VYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQ  171 (211)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~  171 (211)
                      |||+++++++.++..+|...........++|+++|+||+|+.+.+.+..++++++++.++++|++|||++|.||+++|..
T Consensus        80 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~v~~~e~~~~~~~~~~~~~e~Sak~~~~v~e~f~~  159 (171)
T d2erxa1          80 VYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQE  159 (171)
T ss_dssp             EEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHH
T ss_pred             EeecccccchhcccchhhhhhhhhccCCCCcEEEEeecccccccccccHHHHHHHHHHcCCeEEEEcCCCCcCHHHHHHH
Confidence            99999999999998844334333334578999999999999888889999999999999999999999999999999999


Q ss_pred             HHHHHHh
Q 028300          172 LALKIME  178 (211)
Q Consensus       172 i~~~~~~  178 (211)
                      |++.+.+
T Consensus       160 l~~~~~~  166 (171)
T d2erxa1         160 LLNLEKR  166 (171)
T ss_dssp             HHHTCCS
T ss_pred             HHHHHHH
Confidence            9986543

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.3e-36  Score=209.09  Aligned_cols=167  Identities=35%  Similarity=0.588  Sum_probs=143.4

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEE
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGII   90 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (211)
                      +..+||+++|.+|||||||++++..+.+ ..+.++.+ ......+.+++..+.+.+||++|..++......+++.+|+++
T Consensus         3 ~~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i   81 (171)
T d2erya1           3 QEKYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIE-DSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTGEGFL   81 (171)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCC-EEEEEEEEETTEEEEEEEEECC----CCHHHHHHHHHCSEEE
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhCCCCcccCcccc-cceeeeeeecccccccccccccccccccccccccccccceEE
Confidence            4569999999999999999999999988 56666666 445567788899999999999999999998999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHHH
Q 028300           91 LVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFE  170 (211)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~  170 (211)
                      +|||++++++++.+.. |...+.........|+++|+||+|+...+.+..+++..+++.++++|++|||++|.||+++|.
T Consensus        82 lv~d~~~~~s~~~~~~-~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~i~e~f~  160 (171)
T d2erya1          82 LVFSVTDRGSFEEIYK-FQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFH  160 (171)
T ss_dssp             EEEETTCHHHHHTHHH-HHHHHHHHHTSSCCSEEEEEECTTCTTSCSSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHH
T ss_pred             EeeccccccchhhHHH-HhHHHHhhcccCCCCEEEEEeccchhhhccchHHHHHHHHHHcCCEEEEEcCCCCcCHHHHHH
Confidence            9999999999999988 665554444567899999999999988888999999999999999999999999999999999


Q ss_pred             HHHHHHHhcc
Q 028300          171 QLALKIMEVP  180 (211)
Q Consensus       171 ~i~~~~~~~~  180 (211)
                      +|++.+.+.+
T Consensus       161 ~l~~~i~k~~  170 (171)
T d2erya1         161 ELVRVIRKFQ  170 (171)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHhh
Confidence            9999886543

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.6e-36  Score=209.59  Aligned_cols=168  Identities=51%  Similarity=0.810  Sum_probs=151.0

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEE
Q 028300           11 YDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGI   89 (211)
Q Consensus        11 ~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~   89 (211)
                      ++..+||+|+|.+|||||||+++|..+.+ ..+.++.+.......+..++....+.+||+||++++..++..+++++|++
T Consensus         2 ~~~~~KI~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~   81 (174)
T d2bmea1           2 YDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGA   81 (174)
T ss_dssp             CSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEE
T ss_pred             ccEEEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEEEEecCcceeEEEEECCCchhhhhhHHHHhhhCCEE
Confidence            57789999999999999999999999988 66778888888888888889999999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHH
Q 028300           90 ILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCF  169 (211)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~  169 (211)
                      ++|||+++++++..+.. |...+... ...++|+++|+||+|+....++.......++..++++|+++||++|.|++++|
T Consensus        82 i~v~d~~~~~s~~~~~~-~~~~~~~~-~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~gi~e~f  159 (174)
T d2bmea1          82 LLVYDITSRETYNALTN-WLTDARML-ASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAF  159 (174)
T ss_dssp             EEEEETTCHHHHHTHHH-HHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHH
T ss_pred             EEEEecccchhHHHHhh-hhcccccc-cCCceEEEEEEecccccchhchhhhHHHHHHHhCCCEEEEeeCCCCcCHHHHH
Confidence            99999999999999988 55555444 35689999999999998888888888889999999999999999999999999


Q ss_pred             HHHHHHHHhcc
Q 028300          170 EQLALKIMEVP  180 (211)
Q Consensus       170 ~~i~~~~~~~~  180 (211)
                      .+|++.+.++.
T Consensus       160 ~~l~~~i~~~~  170 (174)
T d2bmea1         160 VQCARKILNKI  170 (174)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999987653

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.7e-35  Score=209.97  Aligned_cols=172  Identities=51%  Similarity=0.806  Sum_probs=155.0

Q ss_pred             CCceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcE
Q 028300           10 SYDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQG   88 (211)
Q Consensus        10 ~~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~   88 (211)
                      .++..+||+|+|++|||||||+++|..+.+ ..+.++.+.++....+.+.+..+.+.+||+||++++..++..+++.+|+
T Consensus         2 ~~~~~~KivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~   81 (194)
T d2bcgy1           2 EYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHG   81 (194)
T ss_dssp             CCSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSE
T ss_pred             CCCEEEEEEEECCCCcCHHHHHHHHhhCCCCCCcCCccceeEEEEEEEEeeEEEEEEEEECCCchhhHHHHHHHhccCCE
Confidence            467789999999999999999999999987 6778889998888888999999999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHH
Q 028300           89 IILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQC  168 (211)
Q Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l  168 (211)
                      +|+|||+++++++..+.. |...+... ....+|+++|+||+|+.+...+..++...++...+++|+++||++|.||+++
T Consensus        82 ~i~v~d~t~~~s~~~~~~-~~~~~~~~-~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~gi~e~  159 (194)
T d2bcgy1          82 IIIVYDVTDQESFNGVKM-WLQEIDRY-ATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDA  159 (194)
T ss_dssp             EEEEEETTCHHHHHHHHH-HHHHHHHH-SCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHH
T ss_pred             EEEEEeCcchhhhhhHhh-hhhhhhhc-ccCCceEEEEEeccccccccchhHHHHhhhhhccCcceEEEecCcCccHHHH
Confidence            999999999999999998 44444433 4678999999999999988889999999999999999999999999999999


Q ss_pred             HHHHHHHHHhccchh
Q 028300          169 FEQLALKIMEVPSLL  183 (211)
Q Consensus       169 ~~~i~~~~~~~~~~~  183 (211)
                      |++|++.+.+.....
T Consensus       160 f~~l~~~i~~~~~~~  174 (194)
T d2bcgy1         160 FLTMARQIKESMSQQ  174 (194)
T ss_dssp             HHHHHHHHHHHCCHH
T ss_pred             HHHHHHHHHHHhhhc
Confidence            999999888766543

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.8e-35  Score=206.89  Aligned_cols=164  Identities=37%  Similarity=0.638  Sum_probs=149.4

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEE
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGII   90 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (211)
                      -+++||+++|.+|||||||+++|..+.| ..+.++.+..+.............+.+||++|++.+..++..+++.+|++|
T Consensus         2 ~k~~Ki~lvG~~~vGKTsli~rl~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (167)
T d1z0ja1           2 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAI   81 (167)
T ss_dssp             EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred             CceeEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccccccccccccceeeeecCCchhhhHHHHHHHhhccceE
Confidence            3689999999999999999999999998 677888888888888888889999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHHH
Q 028300           91 LVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFE  170 (211)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~  170 (211)
                      +|||++++++++.+.. |....... .....|+++|+||+|+.+.+.+..++++.++..++++|++|||++|.||+++|.
T Consensus        82 ~v~d~~~~~s~~~~~~-~~~~~~~~-~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~nV~e~f~  159 (167)
T d1z0ja1          82 IVYDITKEETFSTLKN-WVRELRQH-GPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFI  159 (167)
T ss_dssp             EEEETTCHHHHHHHHH-HHHHHHHH-SCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHH
T ss_pred             EEeeechhhhhhhHHH-hhhhhhhc-cCCcceEEEecccchhccccchhHHHHHHHHHHcCCEEEEEecCCCCCHHHHHH
Confidence            9999999999999988 55555444 467899999999999988888999999999999999999999999999999999


Q ss_pred             HHHHHHH
Q 028300          171 QLALKIM  177 (211)
Q Consensus       171 ~i~~~~~  177 (211)
                      +|++++.
T Consensus       160 ~l~~~i~  166 (167)
T d1z0ja1         160 EISRRIP  166 (167)
T ss_dssp             HHHHHCC
T ss_pred             HHHHhCC
Confidence            9998763

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-35  Score=207.45  Aligned_cols=161  Identities=40%  Similarity=0.689  Sum_probs=145.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEEEE
Q 028300           15 FKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVY   93 (211)
Q Consensus        15 ~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (211)
                      +||+|+|.+|||||||+++|.++.+ ..+.++.+..........++..+.+.+||++|++.+...+..++..+|++++||
T Consensus         1 fKv~vvG~~~vGKTsLi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ilv~   80 (164)
T d1yzqa1           1 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVY   80 (164)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEE
T ss_pred             CEEEEECCCCcCHHHHHHHHHhCCCCCccccceeeeccceeeccCCCceeeeecccCCcchhccchHHHhhccceEEEee
Confidence            6899999999999999999999998 677788888888888888889999999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHHHHHH
Q 028300           94 DVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLA  173 (211)
Q Consensus        94 d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~  173 (211)
                      |++++.+++++.. |....... ...++|+++|+||+|+.+...+..+++..+++.++++|++|||++|.||+++|.+|.
T Consensus        81 d~~~~~s~~~i~~-~~~~~~~~-~~~~~~iilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~v~e~f~~i~  158 (164)
T d1yzqa1          81 DITNVNSFQQTTK-WIDDVRTE-RGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA  158 (164)
T ss_dssp             ETTCHHHHHTHHH-HHHHHHHH-HTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHH
T ss_pred             ccccccchhhhHh-hHHHHHHh-cCCCceEEEEecccchhhhhhhhHHHHHHHHHHcCCEEEEecCCCCcCHHHHHHHHH
Confidence            9999999999998 55544433 356899999999999988888888899999999999999999999999999999999


Q ss_pred             HHHH
Q 028300          174 LKIM  177 (211)
Q Consensus       174 ~~~~  177 (211)
                      +++.
T Consensus       159 ~~l~  162 (164)
T d1yzqa1         159 AALP  162 (164)
T ss_dssp             HHSC
T ss_pred             HhhC
Confidence            8764

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.3e-35  Score=206.87  Aligned_cols=164  Identities=40%  Similarity=0.668  Sum_probs=148.9

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEE
Q 028300           13 LSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIIL   91 (211)
Q Consensus        13 ~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   91 (211)
                      -.+||+|+|.+|||||||+++|..+.+ ..+.++.+..............+.+.+||++|++.+..++..+++++|++++
T Consensus         5 ~~~Ki~vvG~~~vGKTsLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   84 (170)
T d1r2qa_           5 CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIV   84 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred             eEEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccceeeccceEEEEEeccCCCchhhhhhHHHHhhCcceEEE
Confidence            468999999999999999999999998 6778888988888888889999999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHHHH
Q 028300           92 VYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQ  171 (211)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~  171 (211)
                      |||+++.++++.+.. |...+... ...++|+++|+||+|+...+.+..++++.++..++++|++|||++|.||+++|.+
T Consensus        85 v~d~~~~~s~~~~~~-~~~~~~~~-~~~~~~iilvgnK~Dl~~~~~v~~e~~~~~~~~~~~~~~e~SAk~g~~V~e~f~~  162 (170)
T d1r2qa_          85 VYDITNEESFARAKN-WVKELQRQ-ASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMA  162 (170)
T ss_dssp             EEETTCHHHHHHHHH-HHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred             EeccchhhHHHHHHH-Hhhhhhhc-cCCCceEEeecccccccccccccHHHHHHHHHhcCCEEEEeeCCCCCCHHHHHHH
Confidence            999999999999998 44444333 4668999999999999888889999999999999999999999999999999999


Q ss_pred             HHHHHHh
Q 028300          172 LALKIME  178 (211)
Q Consensus       172 i~~~~~~  178 (211)
                      |++.+.+
T Consensus       163 l~~~i~~  169 (170)
T d1r2qa_         163 IAKKLPK  169 (170)
T ss_dssp             HHHTSCC
T ss_pred             HHHHHhh
Confidence            9987754

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.5e-35  Score=206.84  Aligned_cols=168  Identities=45%  Similarity=0.738  Sum_probs=147.1

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEE
Q 028300           11 YDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGI   89 (211)
Q Consensus        11 ~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~   89 (211)
                      ++.-+||+|+|++|||||||+++|.++.+ ..+.++.+.......+..++..+.+.+||++|++.+...+..+++++|++
T Consensus         1 ~~~~~Ki~vvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~e~~~~~~~~~~~~~~~~   80 (175)
T d2f9la1           1 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGA   80 (175)
T ss_dssp             CSEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEE
T ss_pred             CCEEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceeeeEEEEECCEEEEEEecccCCcHHHHHHHHHHhhccCeE
Confidence            35679999999999999999999999988 66777788888888888899999999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHH
Q 028300           90 ILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCF  169 (211)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~  169 (211)
                      |+|||+++++|+..+.. |...+..+ ...++|+++|+||+|+.+......+....+...++.+|+++||++|.|++++|
T Consensus        81 i~v~d~~~~~S~~~~~~-~~~~i~~~-~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~i~e~f  158 (175)
T d2f9la1          81 LLVYDIAKHLTYENVER-WLKELRDH-ADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAF  158 (175)
T ss_dssp             EEEEETTCHHHHHTHHH-HHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHH
T ss_pred             EEEEECCCcccchhHHH-HHHHHHHh-cCCCCcEEEEEeeecccccccchHHHHHHhhcccCceEEEEecCCCcCHHHHH
Confidence            99999999999999998 66666555 45679999999999998777777777788888899999999999999999999


Q ss_pred             HHHHHHHHhcc
Q 028300          170 EQLALKIMEVP  180 (211)
Q Consensus       170 ~~i~~~~~~~~  180 (211)
                      +++++.+.+..
T Consensus       159 ~~l~~~i~~~~  169 (175)
T d2f9la1         159 KNILTEIYRIV  169 (175)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99999876543

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.2e-35  Score=207.44  Aligned_cols=163  Identities=25%  Similarity=0.493  Sum_probs=141.5

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEE
Q 028300           13 LSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIIL   91 (211)
Q Consensus        13 ~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   91 (211)
                      +.+||+++|++|||||||+++|..+.| ..+.++.+.. ........+..+.+.+||++|++++...+..+++++|++++
T Consensus         2 ~~iKvvllG~~~vGKTSli~r~~~~~f~~~~~~t~~~~-~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~il   80 (191)
T d2ngra_           2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDN-YAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV   80 (191)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEE-EEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred             CceEEEEECCCCcCHHHHHHHHHhCCCCCCcCCceeee-cceeEeeCCceeeeeccccccchhhhhhhhhcccccceeec
Confidence            479999999999999999999999998 5666777644 45566778889999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCC------------CcccCHHHHHHHHHHcC-CeEEEee
Q 028300           92 VYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDS------------ERVVSREEGIALAKEHG-SLFLECS  158 (211)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~------------~~~v~~~~~~~~~~~~~-~~~~~~S  158 (211)
                      |||+++++||+++..+|...+...  ..+.|+++|+||+|+.+            .+.+..+++..++..++ .+|++||
T Consensus        81 v~d~~~~~Sf~~~~~~~~~~~~~~--~~~~~i~lvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~S  158 (191)
T d2ngra_          81 CFSVVSPSSFENVKEKWVPEITHH--CPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECS  158 (191)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHH--CTTCCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSCEEECC
T ss_pred             ccccchHHHHHHHHHHHHHHHhhc--CCCCceEEEeccccccccchhhhhhhhcccccccHHHHHHHHHHcCCCeEEEEe
Confidence            999999999999988777777654  56899999999999853            34578888899998865 6899999


Q ss_pred             ccCCCcHHHHHHHHHHHHHh
Q 028300          159 AKTRENVEQCFEQLALKIME  178 (211)
Q Consensus       159 a~~~~gv~~l~~~i~~~~~~  178 (211)
                      |++|.||+++|+.++..+.+
T Consensus       159 Ak~~~~V~e~f~~l~~~~~~  178 (191)
T d2ngra_         159 ALTQKGLKNVFDEAILAALE  178 (191)
T ss_dssp             TTTCTTHHHHHHHHHHHHTS
T ss_pred             CCCCcCHHHHHHHHHHHHhc
Confidence            99999999999999876643

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-35  Score=207.85  Aligned_cols=163  Identities=36%  Similarity=0.602  Sum_probs=143.9

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEE
Q 028300           13 LSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIIL   91 (211)
Q Consensus        13 ~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   91 (211)
                      +++||+++|++|||||||+++|+.+.+ ..+.++.+ +........++..+.+.+||++|+..+......+++++|++++
T Consensus         2 k~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~il   80 (167)
T d1kaoa_           2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIL   80 (167)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCC-EEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCCccCCcee-eeeeeeeecCcceEeeccccCCCccccccchHHHhhcccceee
Confidence            579999999999999999999999998 55555555 4555667788899999999999999998889999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHHHH
Q 028300           92 VYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQ  171 (211)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~  171 (211)
                      |||+++++++.++.. |...+.......++|+++|+||+|+...+.+..+++..++..++++|++|||++|.||+++|.+
T Consensus        81 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~~i~e~f~~  159 (167)
T d1kaoa_          81 VYSLVNQQSFQDIKP-MRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAE  159 (167)
T ss_dssp             EEETTCHHHHHHHHH-HHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHH
T ss_pred             eeeecchhhhhhhhc-hhhhhhhhccCCCCCEEEEEEccchhhcccchHHHHHHHHHHcCCeEEEECCCCCcCHHHHHHH
Confidence            999999999999999 6666555445678999999999999887888889999999999999999999999999999999


Q ss_pred             HHHHHH
Q 028300          172 LALKIM  177 (211)
Q Consensus       172 i~~~~~  177 (211)
                      |++++.
T Consensus       160 i~~~i~  165 (167)
T d1kaoa_         160 IVRQMN  165 (167)
T ss_dssp             HHHHHH
T ss_pred             HHHHHc
Confidence            988753

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.1e-35  Score=205.07  Aligned_cols=171  Identities=57%  Similarity=0.969  Sum_probs=154.0

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEE
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGII   90 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (211)
                      -.++||+|+|.+|||||||+++|.++.+ ..+.++.+.......+.+.+..+.+.+||+||++++..++..++.++|+++
T Consensus         5 ~~~iKi~vvG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii   84 (177)
T d1x3sa1           5 LTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVI   84 (177)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEE
T ss_pred             cceeEEEEECCCCcCHHHHHHHHHhCCCCCccccceeecceeEEEEEeccccEEEEEECCCchhhHHHHHHHHhcCCEEE
Confidence            4578999999999999999999999998 677778888888888888999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHHH
Q 028300           91 LVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFE  170 (211)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~  170 (211)
                      +|||++++.+++.+.. |...+.........|+++++||.|.. .+.+...+.+.+++.++++|+++||++|.||+++|+
T Consensus        85 ~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~~i~~~~nk~d~~-~~~v~~~~~~~~~~~~~~~~~e~Sa~tg~gv~e~f~  162 (177)
T d1x3sa1          85 LVYDVTRRDTFVKLDN-WLNELETYCTRNDIVNMLVGNKIDKE-NREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFE  162 (177)
T ss_dssp             EEEETTCHHHHHTHHH-HHHHHTTCCSCSCCEEEEEEECTTSS-SCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHH
T ss_pred             EEEECCCccccccchh-hhhhhcccccccceeeEEEeeccccc-cccccHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHH
Confidence            9999999999999988 67666655456789999999999974 567888889999999999999999999999999999


Q ss_pred             HHHHHHHhccchhc
Q 028300          171 QLALKIMEVPSLLE  184 (211)
Q Consensus       171 ~i~~~~~~~~~~~~  184 (211)
                      +|++.+.+.+..++
T Consensus       163 ~l~~~l~~~p~l~~  176 (177)
T d1x3sa1         163 ELVEKIIQTPGLWE  176 (177)
T ss_dssp             HHHHHHHTSGGGTC
T ss_pred             HHHHHHccCccccc
Confidence            99999998877654

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.8e-35  Score=207.87  Aligned_cols=165  Identities=30%  Similarity=0.551  Sum_probs=145.1

Q ss_pred             CCceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcE
Q 028300           10 SYDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQG   88 (211)
Q Consensus        10 ~~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~   88 (211)
                      +....+||+|+|.+|||||||+++|+.+.| ..+.+|.+. .....+...+..+.+.+||++|++.+...+..+++++|+
T Consensus         5 ~~~~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~Ti~~-~~~~~~~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~a~~   83 (185)
T d2atxa1           5 PGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFD-HYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDV   83 (185)
T ss_dssp             CEEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCC-CEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSE
T ss_pred             CCCcEEEEEEECCCCCCHHHHHHHHhhCCCCCcCCCceee-eeeEEEeeCCceEEeecccccccchhhhhhhhcccccce
Confidence            467889999999999999999999999998 566677664 445566777888999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCC------------CcccCHHHHHHHHHHcC-CeEE
Q 028300           89 IILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDS------------ERVVSREEGIALAKEHG-SLFL  155 (211)
Q Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~------------~~~v~~~~~~~~~~~~~-~~~~  155 (211)
                      +++|||+++++||+++..+|...++..  ..++|+++|+||+|+.+            .+.+..+++.++++.++ .+|+
T Consensus        84 ~ilv~d~t~~~Sf~~~~~~~~~~~~~~--~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~r~v~~~~~~~~a~~~~~~~~~  161 (185)
T d2atxa1          84 FLICFSVVNPASFQNVKEEWVPELKEY--APNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYV  161 (185)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHH--STTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEE
T ss_pred             eeeccccchHHHHHHHHHHHHHHHHhc--CCCCCeeEeeeccccccchhhhhhhhhcccccccHHHHHHHHHHcCCCEEE
Confidence            999999999999999988788888765  56899999999999854            35678888999999887 6899


Q ss_pred             EeeccCCCcHHHHHHHHHHHHH
Q 028300          156 ECSAKTRENVEQCFEQLALKIM  177 (211)
Q Consensus       156 ~~Sa~~~~gv~~l~~~i~~~~~  177 (211)
                      +|||++|.||+++|+.++++++
T Consensus       162 E~SAk~~~gv~e~F~~li~~il  183 (185)
T d2atxa1         162 ECSALTQKGLKTVFDEAIIAIL  183 (185)
T ss_dssp             ECCTTTCTTHHHHHHHHHHHHH
T ss_pred             EecCCCCcCHHHHHHHHHHHHc
Confidence            9999999999999999998875

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.1e-35  Score=209.11  Aligned_cols=170  Identities=49%  Similarity=0.829  Sum_probs=124.6

Q ss_pred             CCCceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCc
Q 028300            9 NSYDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQ   87 (211)
Q Consensus         9 ~~~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d   87 (211)
                      +.++.-+||+|+|.+|||||||+++|.++.+ ..+.++.+.++....+..++..+.+.+||+||++.+..++..+++.+|
T Consensus         1 ~~~~~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~~~   80 (173)
T d2fu5c1           1 KTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAM   80 (173)
T ss_dssp             CCCSEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCS
T ss_pred             CcccEEEEEEEECCCCcCHHHHHHHHHhCCCCCccCccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHhccCCC
Confidence            3577889999999999999999999999887 666778888888888899999999999999999999999999999999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHH
Q 028300           88 GIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQ  167 (211)
Q Consensus        88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~  167 (211)
                      ++|+|||++++.++..+.. |...+... ...+.|+++|+||.|+........+++..++...+++|++|||++|.||++
T Consensus        81 ~~i~v~d~~~~~s~~~~~~-~~~~~~~~-~~~~~~iilv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~gv~e  158 (173)
T d2fu5c1          81 GIMLVYDITNEKSFDNIRN-WIRNIEEH-ASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVEN  158 (173)
T ss_dssp             EEEEEEETTCHHHHHHHHH-HHHHHHHH-SCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCHHH
T ss_pred             EEEEEEECCChhhHHHHHH-HHHHhhhh-ccCCceEEEEEecccchhhcccHHHHHHHHHHhcCCEEEEEeCCCCCCHHH
Confidence            9999999999999999988 55555433 467899999999999988878888888889999999999999999999999


Q ss_pred             HHHHHHHHHHhcc
Q 028300          168 CFEQLALKIMEVP  180 (211)
Q Consensus       168 l~~~i~~~~~~~~  180 (211)
                      +|++|++.+.+..
T Consensus       159 ~f~~l~~~i~~k~  171 (173)
T d2fu5c1         159 AFFTLARDIKAKM  171 (173)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999886543

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2e-35  Score=206.80  Aligned_cols=164  Identities=34%  Similarity=0.513  Sum_probs=141.8

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEEE
Q 028300           14 SFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILV   92 (211)
Q Consensus        14 ~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (211)
                      ++||+++|++|||||||+++|+.+.| ..+.||.+..+. .....++..+.+.+||++|...+. ....+++.+|++++|
T Consensus         2 eiKi~lvG~~~vGKTsli~r~~~~~f~~~~~pTi~~~~~-~~~~~~~~~~~l~i~D~~g~~~~~-~~~~~~~~~~~~ilv   79 (168)
T d2atva1           2 EVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYR-HQATIDDEVVSMEILDTAGQEDTI-QREGHMRWGEGFVLV   79 (168)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEE-EEEEETTEEEEEEEEECCCCCCCH-HHHHHHHHCSEEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceecccc-ccccccccceEEEEeecccccccc-cchhhhcccccceee
Confidence            68999999999999999999999998 677788777665 344568889999999999987764 456688899999999


Q ss_pred             EECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCc-HHHHHHH
Q 028300           93 YDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTREN-VEQCFEQ  171 (211)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~g-v~~l~~~  171 (211)
                      ||+++++++..+.. |...........+.|+++|+||+|+...+.+..++++.++..++++|++|||++|.| |+++|.+
T Consensus        80 ~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilvgnK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~Saktg~gnV~e~F~~  158 (168)
T d2atva1          80 YDITDRGSFEEVLP-LKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYE  158 (168)
T ss_dssp             EETTCHHHHHTHHH-HHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHHHH
T ss_pred             cccCCccchhhhhh-hcccccccccccCcceeeeccchhhhhhccCcHHHHHHHHHHhCCeEEEEccccCCcCHHHHHHH
Confidence            99999999999988 555554444567899999999999988888999999999999999999999999985 9999999


Q ss_pred             HHHHHHhcc
Q 028300          172 LALKIMEVP  180 (211)
Q Consensus       172 i~~~~~~~~  180 (211)
                      |++.+.+++
T Consensus       159 l~~~i~~~r  167 (168)
T d2atva1         159 LCREVRRRR  167 (168)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHhc
Confidence            999887543

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.1e-35  Score=205.66  Aligned_cols=165  Identities=50%  Similarity=0.828  Sum_probs=144.6

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEE
Q 028300           13 LSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIIL   91 (211)
Q Consensus        13 ~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   91 (211)
                      .-+||+|+|++|||||||++++.++.+ ..+.++.+...........+..+.+.+||++|+..+..++..++..+|++++
T Consensus         2 y~~KivvvG~~~vGKTsli~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~il   81 (173)
T d2a5ja1           2 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALL   81 (173)
T ss_dssp             EEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEE
T ss_pred             eeEEEEEECCCCcCHHHHHHHHhcCCCCCCcccceeeccceeeeeeeeeEEEEEeecccCccchhhHHHHHhhccCEEEE
Confidence            458999999999999999999999988 6667777788887888888899999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHHHH
Q 028300           92 VYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQ  171 (211)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~  171 (211)
                      |||++++++++.+.. |...+... ...++|+++|+||+|+...+.+..++...++..++++|+++||++|.||+++|.+
T Consensus        82 v~d~~~~~sf~~~~~-~~~~~~~~-~~~~~piilv~nK~D~~~~~~~~~~~~~~~a~~~~~~~~e~Sa~tg~~V~e~f~~  159 (173)
T d2a5ja1          82 VYDITRRETFNHLTS-WLEDARQH-SSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFIN  159 (173)
T ss_dssp             EEETTCHHHHHTHHH-HHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHH
T ss_pred             EEeecChHHHHhHHH-HHHHHHHh-CCCCCeEEEEecCCchhhhhhhHHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHH
Confidence            999999999999998 55555444 4568999999999999887788889999999999999999999999999999999


Q ss_pred             HHHHHHhc
Q 028300          172 LALKIMEV  179 (211)
Q Consensus       172 i~~~~~~~  179 (211)
                      |++.+.+.
T Consensus       160 i~~~i~~~  167 (173)
T d2a5ja1         160 TAKEIYRK  167 (173)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99988754

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9e-36  Score=211.91  Aligned_cols=169  Identities=36%  Similarity=0.637  Sum_probs=147.4

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECC----------EEEEEEEEeCCChhhhccch
Q 028300           11 YDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAG----------KRLKLTIWDTAGQERFRTLT   79 (211)
Q Consensus        11 ~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~----------~~~~~~l~D~~g~~~~~~~~   79 (211)
                      ++..+||+|+|++|||||||+++|.++.+ ..+.++.+.++....+..++          ..+.+.+||++|++++..++
T Consensus         2 ~d~~~Ki~ivG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~dt~G~e~~~~~~   81 (186)
T d2f7sa1           2 YDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLT   81 (186)
T ss_dssp             CSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHH
T ss_pred             CCEEEEEEEECCCCcCHHHHHHHHhcCCCCCccCCcccceeeEEEEEEecccccccccccceEEeccccCCcchhhHHHH
Confidence            56789999999999999999999999888 55566666666555554432          34789999999999999999


Q ss_pred             hhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeec
Q 028300           80 SSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSA  159 (211)
Q Consensus        80 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa  159 (211)
                      ..+++++|++|+|||++++.+++.+.. |...+........+|+++|+||+|+...+.+..+++..+++.++++|+++||
T Consensus        82 ~~~~~~~~~~i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~v~~~e~~~~~~~~~~~~~e~Sa  160 (186)
T d2f7sa1          82 TAFFRDAMGFLLMFDLTSQQSFLNVRN-WMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSA  160 (186)
T ss_dssp             HHHHTTCCEEEEEEETTCHHHHHHHHH-HHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEEBT
T ss_pred             HHHHhcCCEEEEEEeccccccceeeee-ccchhhhhccCCCceEEEEeeeccchhhhcchHHHHHHHHHHcCCEEEEEeC
Confidence            999999999999999999999999988 7777765556778999999999999888889999999999999999999999


Q ss_pred             cCCCcHHHHHHHHHHHHHhcc
Q 028300          160 KTRENVEQCFEQLALKIMEVP  180 (211)
Q Consensus       160 ~~~~gv~~l~~~i~~~~~~~~  180 (211)
                      ++|.||+++|++|++.+.++.
T Consensus       161 k~~~~i~e~f~~l~~~i~~k~  181 (186)
T d2f7sa1         161 ATGQNVEKAVETLLDLIMKRM  181 (186)
T ss_dssp             TTTBTHHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHH
Confidence            999999999999999887543

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-34  Score=202.97  Aligned_cols=165  Identities=47%  Similarity=0.806  Sum_probs=139.6

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHhhCCC--CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcE
Q 028300           11 YDLSFKILLIGDSGVGKSSLLVSFISSSV--DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQG   88 (211)
Q Consensus        11 ~~~~~~I~v~G~~~~GKssli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~   88 (211)
                      ++..+||+|+|+++||||||++++..+.+  ....++.+.++....+...+..+.+.+||++|++.+..++..+++++|+
T Consensus         3 ~d~~fKi~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~d~   82 (170)
T d2g6ba1           3 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHA   82 (170)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSE
T ss_pred             CceEEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeeeeeEEEEEEecCcEEEEEEEECCCchhhHHHHHHhhcCCce
Confidence            56789999999999999999999999887  3345566778888888889999999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHH
Q 028300           89 IILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQC  168 (211)
Q Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l  168 (211)
                      +++|||+++++++..+...|......  .....|+++|+||.|+.....+..+++..++..++++|+++||++|.||+++
T Consensus        83 ~i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~~~iilv~~k~d~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gi~e~  160 (170)
T d2g6ba1          83 LLLLYDVTNKASFDNIQAWLTEIHEY--AQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLA  160 (170)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHH--SCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHH
T ss_pred             eEEEecCCcccchhhhhhhhhhhhhc--cCCCceEEEEEeeechhhcccccHHHHHHHHHHcCCEEEEEeCCCCcCHHHH
Confidence            99999999999999999855444443  3567899999999999888899999999999999999999999999999999


Q ss_pred             HHHHHHHHH
Q 028300          169 FEQLALKIM  177 (211)
Q Consensus       169 ~~~i~~~~~  177 (211)
                      |.+|++.+.
T Consensus       161 f~~l~~~i~  169 (170)
T d2g6ba1         161 FTAIAKELK  169 (170)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHcC
Confidence            999998875

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.7e-34  Score=203.74  Aligned_cols=162  Identities=29%  Similarity=0.542  Sum_probs=141.7

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEEE
Q 028300           14 SFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILV   92 (211)
Q Consensus        14 ~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (211)
                      ..||+|+|++|||||||+++|..+.+ ..+.++.+ ..........+..+.+.+||++|++.+...+..+++++|++|+|
T Consensus         2 r~KivvvG~~~vGKTsLi~~~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv   80 (177)
T d1kmqa_           2 RKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVF-ENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMC   80 (177)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSE-EEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred             cEEEEEECCCCcCHHHHHHHHHhCCCCCCcCCcee-eeccccccccccceeeeccccCccchhcccchhhcccchhhhhh
Confidence            57999999999999999999999998 45566655 44556677888999999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCC------------cccCHHHHHHHHHHcC-CeEEEeec
Q 028300           93 YDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSE------------RVVSREEGIALAKEHG-SLFLECSA  159 (211)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~------------~~v~~~~~~~~~~~~~-~~~~~~Sa  159 (211)
                      ||+++++||+++..+|...+...  ..++|++||+||+|+.+.            +.+..++++.+++.++ .+|++|||
T Consensus        81 ~d~~~~~Sf~~~~~~~~~~~~~~--~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA  158 (177)
T d1kmqa_          81 FSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSA  158 (177)
T ss_dssp             EETTCHHHHHHHHHTHHHHHHHH--STTSCEEEEEECGGGTTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred             cccchhHHHHHHHHHHHHHHHHh--CCCCceEEeeecccccchhhHHHHHHHhhcccccHHHHHHHHHHcCCcEEEEecC
Confidence            99999999999988788877765  568999999999998543            4577888889999888 48999999


Q ss_pred             cCCCcHHHHHHHHHHHHHh
Q 028300          160 KTRENVEQCFEQLALKIME  178 (211)
Q Consensus       160 ~~~~gv~~l~~~i~~~~~~  178 (211)
                      ++|.||+++|+.+.+.+++
T Consensus       159 kt~~gi~e~F~~i~~~~l~  177 (177)
T d1kmqa_         159 KTKDGVREVFEMATRAALQ  177 (177)
T ss_dssp             TTCTTHHHHHHHHHHHHHC
T ss_pred             CCCcCHHHHHHHHHHHHhC
Confidence            9999999999999988764

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-34  Score=202.17  Aligned_cols=164  Identities=31%  Similarity=0.577  Sum_probs=144.6

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEE
Q 028300           13 LSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIIL   91 (211)
Q Consensus        13 ~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   91 (211)
                      .++||+++|++|||||||+++|+++.+ ..+.++.+..+. ..+...+..+.+.+||++|.+.+...+..+++.++++++
T Consensus         2 ~e~Ki~viG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~ii   80 (166)
T d1ctqa_           2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC   80 (166)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHCCCCCSCCCCSEEEEE-EEEEETTEEEEEEEEEECCCGGGHHHHHHHHHHCSEEEE
T ss_pred             CeeEEEEECCCCCCHHHHHHHHHhCCCCCccCCccceeec-cceeeeceeeeeeeeeccCccccccchhhhhhcccccce
Confidence            579999999999999999999999998 555667666554 345667888999999999999999889999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHHHH
Q 028300           92 VYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQ  171 (211)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~  171 (211)
                      |||++++.+++.+.. |...+.......++|+++|+||+|+. .+.+..++++++++.++++|++|||++|.||+++|.+
T Consensus        81 v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~e~Sak~g~gi~e~f~~  158 (166)
T d1ctqa_          81 VFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYT  158 (166)
T ss_dssp             EEETTCHHHHHTHHH-HHHHHHHHHTCSSCCEEEEEECTTCS-CCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHH
T ss_pred             eecccccccHHHHHH-HHHHHHHhcCCCCCeEEEEecccccc-cccccHHHHHHHHHHhCCeEEEEcCCCCcCHHHHHHH
Confidence            999999999999988 88888776566789999999999985 4566788899999999999999999999999999999


Q ss_pred             HHHHHHhc
Q 028300          172 LALKIMEV  179 (211)
Q Consensus       172 i~~~~~~~  179 (211)
                      |++.+.++
T Consensus       159 i~~~i~~~  166 (166)
T d1ctqa_         159 LVREIRQH  166 (166)
T ss_dssp             HHHHHHTC
T ss_pred             HHHHHHhC
Confidence            99988653

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.3e-35  Score=204.05  Aligned_cols=163  Identities=37%  Similarity=0.603  Sum_probs=142.3

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEE
Q 028300           13 LSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIIL   91 (211)
Q Consensus        13 ~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   91 (211)
                      +++||+++|.+|||||||+++|..+.| ..+.++.+..+ ...+..++..+.+.+||++|+..+...+..+++.+|++++
T Consensus         2 r~~KivvvG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   80 (167)
T d1c1ya_           2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFAL   80 (167)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEE-EEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEE
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCccCCcccccc-ceeEEeeeeEEEeccccccCcccccccccccccccceeEE
Confidence            578999999999999999999999998 55666666554 4556778889999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHH-cCCeEEEeeccCCCcHHHHHH
Q 028300           92 VYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKE-HGSLFLECSAKTRENVEQCFE  170 (211)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~-~~~~~~~~Sa~~~~gv~~l~~  170 (211)
                      |||++++++++++.. |...+.......++|+++|+||+|+.....+..++...++.+ .+++|++|||++|.||+++|.
T Consensus        81 v~d~~~~~sf~~~~~-~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~F~  159 (167)
T d1c1ya_          81 VYSITAQSTFNDLQD-LREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFY  159 (167)
T ss_dssp             EEETTCHHHHHTHHH-HHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHH
T ss_pred             eeeccchhhhHhHHH-HHHHHHHhcCCCCCeEEEEEEecCcccccccchhHHHHHHHHhCCCEEEEEcCCCCcCHHHHHH
Confidence            999999999999999 555554443567899999999999988888888888888887 468999999999999999999


Q ss_pred             HHHHHHH
Q 028300          171 QLALKIM  177 (211)
Q Consensus       171 ~i~~~~~  177 (211)
                      +|++.+.
T Consensus       160 ~l~~~i~  166 (167)
T d1c1ya_         160 DLVRQIN  166 (167)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHhc
Confidence            9998775

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.8e-36  Score=209.54  Aligned_cols=164  Identities=31%  Similarity=0.578  Sum_probs=139.8

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEE
Q 028300           13 LSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIIL   91 (211)
Q Consensus        13 ~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   91 (211)
                      -++||+++|++|||||||+++|+.+.+ ..+.+|.+.++....+..++..+.+.+||++|+..+..++..+++++|++++
T Consensus         2 ~~~Ki~vvG~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~il   81 (170)
T d1i2ma_           2 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAII   81 (170)
T ss_dssp             EEEEEEEEECTTSSHHHHHHTTC-----CCEEEETTEEEEEEEECBTTCCEEEEEEECTTHHHHSSCGGGGTTTCCEEEE
T ss_pred             eeEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeccccccccccccccccccccccccccccceecchhcccccchhh
Confidence            468999999999999999999999988 6677888888888888888889999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHHHH
Q 028300           92 VYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQ  171 (211)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~  171 (211)
                      |||+++++|++++.. |...+...  ..++|+++|+||+|+.......  +...++...+++|+++||++|.||+++|.+
T Consensus        82 v~d~~~~~Sf~~~~~-~~~~~~~~--~~~~piilvgnK~Dl~~~~~~~--~~~~~~~~~~~~~~e~Sak~~~~v~e~f~~  156 (170)
T d1i2ma_          82 MFDVTSRVTYKNVPN-WHRDLVRV--CENIPIVLCGNKVDIKDRKVKA--KSIVFHRKKNLQYYDISAKSNYNFEKPFLW  156 (170)
T ss_dssp             EEETTSGGGGTTHHH-HHHHHHHH--HCSCCEEEEEECCCCSCSCCTT--TSHHHHSSCSSEEEEEBTTTTBTTTHHHHH
T ss_pred             ccccccccccchhHH-HHHHHhhc--cCCCceeeecchhhhhhhhhhh--HHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence            999999999999998 66665544  3589999999999997654433  345667788899999999999999999999


Q ss_pred             HHHHHHhccc
Q 028300          172 LALKIMEVPS  181 (211)
Q Consensus       172 i~~~~~~~~~  181 (211)
                      |++.+...+.
T Consensus       157 l~~~l~~~~~  166 (170)
T d1i2ma_         157 LARKLIGDPN  166 (170)
T ss_dssp             HHHHHHTCTT
T ss_pred             HHHHHccCCC
Confidence            9999876554

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-34  Score=203.41  Aligned_cols=164  Identities=28%  Similarity=0.388  Sum_probs=140.1

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhhCCC--CCCCCccceeeEEEEEEECCEEEEEEEEeCCC---hhhhccchhhhccCCcE
Q 028300           14 SFKILLIGDSGVGKSSLLVSFISSSV--DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAG---QERFRTLTSSYYRGAQG   88 (211)
Q Consensus        14 ~~~I~v~G~~~~GKssli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g---~~~~~~~~~~~~~~~d~   88 (211)
                      .+||+++|++|+|||||+++|.+..+  ....++.+.+.....+.+++..+.+.+||+++   ++++  ++..+++++|+
T Consensus         3 ~~Kv~lvG~~~vGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~e~~--~~~~~~~~~~~   80 (172)
T d2g3ya1           3 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEW--LHDHCMQVGDA   80 (172)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHH--HHHCCCCCCSE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCcCCccccccceeeecceeeeccCCceeeeeeeccccccccccc--cccccccccce
Confidence            58999999999999999999998765  44556677777778888899999999999875   4443  46678999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHH
Q 028300           89 IILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQC  168 (211)
Q Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l  168 (211)
                      +|+|||++++++++++.. |...+.......++|+++|+||+|+.+.+++..++++.++..++++|+++||++|.||+++
T Consensus        81 ~ilvfd~t~~~s~~~~~~-~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~g~~i~~~  159 (172)
T d2g3ya1          81 YLIVYSITDRASFEKASE-LRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKEL  159 (172)
T ss_dssp             EEEEEETTCHHHHHHHHH-HHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHH
T ss_pred             eeeeecccccchhhhhhh-hhhhhhhccccCCceEEEEeccccccccccccHHHHHHHHHHcCCeEEEEeCCCCcCHHHH
Confidence            999999999999999998 6666654445678999999999999888889999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcc
Q 028300          169 FEQLALKIMEVP  180 (211)
Q Consensus       169 ~~~i~~~~~~~~  180 (211)
                      |.+|++.+..++
T Consensus       160 f~~l~~~i~~rr  171 (172)
T d2g3ya1         160 FEGIVRQVRLRR  171 (172)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHHHcc
Confidence            999999887654

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.6e-34  Score=201.47  Aligned_cols=161  Identities=46%  Similarity=0.761  Sum_probs=144.5

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEEE
Q 028300           14 SFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILV   92 (211)
Q Consensus        14 ~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (211)
                      .+||+++|++|||||||+++|..+.| ..+.++.+.++....+...+..+.+.+||++|.+.+..++..++..+|++++|
T Consensus         3 ~iKi~vvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~i~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~ilv   82 (170)
T d1ek0a_           3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPMYYRNAQAALVV   82 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCccccccccceeeccccccccccccccccccCCchhHHHHHHHHHhccceEEEE
Confidence            68999999999999999999999998 67788889888888889999999999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCC---CcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHH
Q 028300           93 YDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDS---ERVVSREEGIALAKEHGSLFLECSAKTRENVEQCF  169 (211)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~---~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~  169 (211)
                      ||++++.+++++.. |....... .....|+++++||+|+.+   .+.+..++++++++.++++|+++||++|.||+++|
T Consensus        83 ~d~~~~~s~~~~~~-~~~~~~~~-~~~~~~~~~v~nk~d~~~~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gV~e~F  160 (170)
T d1ek0a_          83 YDVTKPQSFIKARH-WVKELHEQ-ASKDIIIALVGNKIDMLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVF  160 (170)
T ss_dssp             EETTCHHHHHHHHH-HHHHHHHH-SCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHH
T ss_pred             EeCCcccchhhhhh-hhhhhccc-cccccceeeeecccccccccchhhhhHHHHHHHHHHcCCEEEEecCCCCcCHHHHH
Confidence            99999999999998 55444433 456889999999999843   46788899999999999999999999999999999


Q ss_pred             HHHHHHH
Q 028300          170 EQLALKI  176 (211)
Q Consensus       170 ~~i~~~~  176 (211)
                      .+|++.+
T Consensus       161 ~~i~~~i  167 (170)
T d1ek0a_         161 LGIGEKI  167 (170)
T ss_dssp             HHHHTTS
T ss_pred             HHHHHHh
Confidence            9988654

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.5e-34  Score=200.84  Aligned_cols=165  Identities=29%  Similarity=0.517  Sum_probs=142.6

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEE
Q 028300           11 YDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGI   89 (211)
Q Consensus        11 ~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~   89 (211)
                      .++.+||+|+|.+|||||||+++|+.+.| ..+.++.+ ......+..++..+.+.+||++|++.+...+..+++.+|++
T Consensus         2 ~p~~iKivviG~~~vGKTsli~~~~~~~f~~~~~~ti~-~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~   80 (183)
T d1mh1a_           2 SPQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVS   80 (183)
T ss_dssp             CCEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSC-CEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEE
T ss_pred             CceeEEEEEECCCCCCHHHHHHHHHhCCCCccccccee-eceeeeeeccCcceEEEeecccccccchhhhhhccccccee
Confidence            46889999999999999999999999998 56666666 44456677889999999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCC------------cccCHHHHHHHHHHcC-CeEEE
Q 028300           90 ILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSE------------RVVSREEGIALAKEHG-SLFLE  156 (211)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~------------~~v~~~~~~~~~~~~~-~~~~~  156 (211)
                      ++|||++++++|+++..+|...++.+  ..++|+++|+||+|+.+.            ......+...+++.++ ++|++
T Consensus        81 ilv~d~~~~~sf~~i~~~~~~~~~~~--~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~E  158 (183)
T d1mh1a_          81 LICFSLVSPASFENVRAKWYPEVRHH--CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLE  158 (183)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHH--STTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEE
T ss_pred             eeeeccchHHHHHHHHHHHHHHHHHh--CCCCcEEEEeecccchhhhhhhhhhhhccccchhhHHHHHHHHHcCCceEEE
Confidence            99999999999999988788777765  568999999999997543            2345667778888877 68999


Q ss_pred             eeccCCCcHHHHHHHHHHHHHh
Q 028300          157 CSAKTRENVEQCFEQLALKIME  178 (211)
Q Consensus       157 ~Sa~~~~gv~~l~~~i~~~~~~  178 (211)
                      |||++|.||+++|.+|++.++.
T Consensus       159 ~SAk~~~~V~e~F~~l~~~il~  180 (183)
T d1mh1a_         159 CSALTQRGLKTVFDEAIRAVLC  180 (183)
T ss_dssp             CCTTTCTTHHHHHHHHHHHHSC
T ss_pred             cCCCCCcCHHHHHHHHHHHHcC
Confidence            9999999999999999998764

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=8.4e-34  Score=198.11  Aligned_cols=163  Identities=56%  Similarity=0.869  Sum_probs=139.2

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEEE
Q 028300           14 SFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILV   92 (211)
Q Consensus        14 ~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (211)
                      -+||+++|.+|||||||+++|+.+.+ ..+.++.+.++....+..++..+.+.+||+||++.+..++..+++++|++++|
T Consensus         2 ~~Ki~vvG~~~vGKTSli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v   81 (166)
T d1g16a_           2 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILV   81 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCccCCccceeEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEEE
Confidence            48999999999999999999999988 66788999999988898899999999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHHHHH
Q 028300           93 YDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQL  172 (211)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i  172 (211)
                      ||++++++++.+.. |....... .....|++++++|.|+. .+....+++..++..++++|++|||++|.||+++|++|
T Consensus        82 ~d~~~~~s~~~~~~-~~~~~~~~-~~~~~~~i~~~~k~d~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~e~f~~l  158 (166)
T d1g16a_          82 YDITDERTFTNIKQ-WFKTVNEH-ANDEAQLLLVGNKSDME-TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTL  158 (166)
T ss_dssp             EETTCHHHHHTHHH-HHHHHHHH-SCTTCEEEEEEECTTCT-TCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHH
T ss_pred             EECCCccCHHHHHh-hhhhhhcc-ccCcceeeeecchhhhh-hhhhhHHHHHHHHHhcCCeEEEECCCCCCCHHHHHHHH
Confidence            99999999999888 44444433 46678999999999975 45567788899999999999999999999999999999


Q ss_pred             HHHHHhc
Q 028300          173 ALKIMEV  179 (211)
Q Consensus       173 ~~~~~~~  179 (211)
                      ++.+.++
T Consensus       159 ~~~i~~k  165 (166)
T d1g16a_         159 AKLIQEK  165 (166)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHhc
Confidence            9988654

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3.1e-33  Score=195.03  Aligned_cols=159  Identities=39%  Similarity=0.672  Sum_probs=141.0

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhcc-chhhhccCCcEEE
Q 028300           13 LSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRT-LTSSYYRGAQGII   90 (211)
Q Consensus        13 ~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~-~~~~~~~~~d~~i   90 (211)
                      +.+||+++|++|||||||+++|..+.+ ..+.++.+................+.+||++|...+.. .+..+++++|++|
T Consensus         1 r~~Kv~liG~~~vGKTsLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i   80 (165)
T d1z06a1           1 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVV   80 (165)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEE
T ss_pred             CEEEEEEECCCCcCHHHHHHHHHhCCCCCccCcccccccceeeeeeeccceEEEEEeccCchhhccccceeeecCCCceE
Confidence            358999999999999999999999988 67778888888888888899999999999999776654 5677899999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccC---CCcHHH
Q 028300           91 LVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKT---RENVEQ  167 (211)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~---~~gv~~  167 (211)
                      +|||++++++++++.. |...+..+....++|++||+||+|+.+++.+..++++.+++.++++|++|||++   +.||++
T Consensus        81 lv~d~~~~~s~~~~~~-~~~~i~~~~~~~~~pi~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAkt~~~~~~V~e  159 (165)
T d1z06a1          81 FVYDMTNMASFHSLPA-WIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEA  159 (165)
T ss_dssp             EEEETTCHHHHHTHHH-HHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSCHHH
T ss_pred             EEEEeehhhhhhhhhh-hhHHHHhhccCCCCeEEEEeccccchhccchhHHHHHHHHHHCCCEEEEEecccCCcCcCHHH
Confidence            9999999999999988 777766554567899999999999988888999999999999999999999987   569999


Q ss_pred             HHHHH
Q 028300          168 CFEQL  172 (211)
Q Consensus       168 l~~~i  172 (211)
                      +|.+|
T Consensus       160 ~F~~l  164 (165)
T d1z06a1         160 IFMTL  164 (165)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            99886

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=1.5e-33  Score=199.99  Aligned_cols=167  Identities=35%  Similarity=0.637  Sum_probs=144.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEEEE
Q 028300           15 FKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVY   93 (211)
Q Consensus        15 ~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (211)
                      +||+|+|.+|||||||+++|.++.+ ..+.++.+.++....+...+..+.+.+||++|...+...+...+..+|+++++|
T Consensus         3 ~Kv~vvG~~~vGKSSLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~   82 (184)
T d1vg8a_           3 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVF   82 (184)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEEE
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCCCcCCccceeeeeeeeeeCCceEEEEeeecCCcccccccccccccCccEEEEee
Confidence            7999999999999999999999998 677888999998888888889999999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHhhhhcc---CCCccEEEEeecCCCCCCcccCHHHHHHHHH-HcCCeEEEeeccCCCcHHHHH
Q 028300           94 DVTRRETFTNLSDVWAKEVDLYST---NQDCVKMLVGNKVDRDSERVVSREEGIALAK-EHGSLFLECSAKTRENVEQCF  169 (211)
Q Consensus        94 d~~~~~s~~~~~~~~~~~~~~~~~---~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~-~~~~~~~~~Sa~~~~gv~~l~  169 (211)
                      |.++..++..+.. |++.+.....   ..++|+++|+||+|+.+ +.+..++...++. ..+++|++|||++|.||+++|
T Consensus        83 d~~~~~~~~~~~~-~~~~i~~~~~~~~~~~ip~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~e~Sak~~~gI~e~f  160 (184)
T d1vg8a_          83 DVTAPNTFKTLDS-WRDEFLIQASPRDPENFPFVVLGNKIDLEN-RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAF  160 (184)
T ss_dssp             ETTCHHHHHTHHH-HHHHHHHHHCCSSGGGSCEEEEEECTTSSC-CCSCHHHHHHHHHHTTSCCEEECBTTTTBSHHHHH
T ss_pred             cccchhhhhcchh-hHHHHHHHhccccccCCCEEEEEEeecccc-cchhHHHHHHHHHHhcCCeEEEEcCCCCcCHHHHH
Confidence            9999999999988 7766544322   34689999999999865 4456666666654 457899999999999999999


Q ss_pred             HHHHHHHHhccchh
Q 028300          170 EQLALKIMEVPSLL  183 (211)
Q Consensus       170 ~~i~~~~~~~~~~~  183 (211)
                      ++|++.+.+++...
T Consensus       161 ~~l~~~i~~~~~~~  174 (184)
T d1vg8a_         161 QTIARNALKQETEV  174 (184)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccccc
Confidence            99999888876544

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=5.2e-33  Score=196.23  Aligned_cols=162  Identities=27%  Similarity=0.535  Sum_probs=140.2

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEEE
Q 028300           14 SFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILV   92 (211)
Q Consensus        14 ~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (211)
                      ..||+++|.+|||||||+++|..+.| ..+.++.+. .....+..++..+.+.+||++|++.+...+..+++++|++++|
T Consensus         2 ~~KivliG~~~vGKTsli~r~~~~~f~~~~~~t~~~-~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv   80 (179)
T d1m7ba_           2 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFE-NYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLIC   80 (179)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEE-EEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCCCccCCceee-cccccccccceEEeeccccccccccccccccchhhhhhhhhee
Confidence            57999999999999999999999998 555666553 4445567788899999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCC------------CcccCHHHHHHHHHHcCC-eEEEeec
Q 028300           93 YDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDS------------ERVVSREEGIALAKEHGS-LFLECSA  159 (211)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~------------~~~v~~~~~~~~~~~~~~-~~~~~Sa  159 (211)
                      ||+++++||+.+...|...+...  ..++|+++|+||+|+..            .+.+..++...++++++. +|+||||
T Consensus        81 ~d~~~~~Sf~~~~~~~~~~~~~~--~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~~~~~y~E~SA  158 (179)
T d1m7ba_          81 FDISRPETLDSVLKKWKGEIQEF--CPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSA  158 (179)
T ss_dssp             EETTCHHHHHHHHHTHHHHHHHH--CTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECBT
T ss_pred             eecccCCCHHHHHHHHHHHHhcc--CCcceEEEEEecccccccchhhHHHhhhhcCcchHHHHHHHHHHhCCCeEEEEeC
Confidence            99999999999998787777654  56899999999999843            355788889999988774 8999999


Q ss_pred             cCCC-cHHHHHHHHHHHHHh
Q 028300          160 KTRE-NVEQCFEQLALKIME  178 (211)
Q Consensus       160 ~~~~-gv~~l~~~i~~~~~~  178 (211)
                      ++|. |++++|+.+...+++
T Consensus       159 k~~~n~i~~~F~~~~~~~l~  178 (179)
T d1m7ba_         159 LQSENSVRDIFHVATLACVN  178 (179)
T ss_dssp             TTBHHHHHHHHHHHHHHHHT
T ss_pred             CCCCcCHHHHHHHHHHHHhc
Confidence            9997 699999999998875

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-32  Score=193.10  Aligned_cols=165  Identities=39%  Similarity=0.687  Sum_probs=141.8

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEE
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGII   90 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (211)
                      ..-+||+|+|.+|||||||+++|..+.+ ..+.++.+...........+..+.+.+||++|...+...+...+..+|+++
T Consensus         4 ~~~~KI~vvG~~~vGKSSli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   83 (174)
T d1wmsa_           4 SSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCL   83 (174)
T ss_dssp             EEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHhCCCCCccccceeeeeeeeeeeecCceeeEeeecccCcceehhhhhhhhhccceEE
Confidence            4567999999999999999999999988 677888888888888888999999999999999988888999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHhhhh---ccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHc-CCeEEEeeccCCCcHH
Q 028300           91 LVYDVTRRETFTNLSDVWAKEVDLY---STNQDCVKMLVGNKVDRDSERVVSREEGIALAKEH-GSLFLECSAKTRENVE  166 (211)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~-~~~~~~~Sa~~~~gv~  166 (211)
                      ++||.+++.+++.+.. |.+.+..+   ....+.|+++|+||+|+.+ +.+..++++.++++. .++|++|||++|.||+
T Consensus        84 ~~~d~~~~~s~~~~~~-~~~~i~~~~~~~~~~~~piilVgnK~Dl~~-~~v~~~~~~~~~~~~~~~~~~e~Sak~~~gI~  161 (174)
T d1wmsa_          84 LTFSVDDSQSFQNLSN-WKKEFIYYADVKEPESFPFVILGNKIDISE-RQVSTEEAQAWCRDNGDYPYFETSAKDATNVA  161 (174)
T ss_dssp             EEEETTCHHHHHTHHH-HHHHHHHHHTCSCTTTSCEEEEEECTTCSS-CSSCHHHHHHHHHHTTCCCEEECCTTTCTTHH
T ss_pred             EEEeeecccccchhhh-HHHHHHHHhccccCCCceEEEeccccchhh-ccCcHHHHHHHHHHcCCCeEEEEcCCCCcCHH
Confidence            9999999999999888 77666443   2345789999999999854 678888999999876 4799999999999999


Q ss_pred             HHHHHHHHHHHh
Q 028300          167 QCFEQLALKIME  178 (211)
Q Consensus       167 ~l~~~i~~~~~~  178 (211)
                      ++|++|++.++.
T Consensus       162 e~f~~l~~~il~  173 (174)
T d1wmsa_         162 AAFEEAVRRVLA  173 (174)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhc
Confidence            999999988763

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.6e-33  Score=196.46  Aligned_cols=166  Identities=37%  Similarity=0.650  Sum_probs=127.6

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEE-CCEEEEEEEEeCCChhhhccchhhhccCCcEEEE
Q 028300           14 SFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTV-AGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIIL   91 (211)
Q Consensus        14 ~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   91 (211)
                      -+||+++|++|||||||+++|.++.+ ..+.++.+.......... ......+.+||++|++.+...+..+++.+|++++
T Consensus         2 ~~Ki~~vG~~~vGKSsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   81 (175)
T d1ky3a_           2 ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVL   81 (175)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHcCCCCCccCcccccceeeeeeeecCcccccceeeccCCchhhhhHHHHHhhccceEEE
Confidence            58999999999999999999999988 566677776666555544 3445778999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHhhhhc---cCCCccEEEEeecCCCCCCc-ccCHHHHHHHHHHcC-CeEEEeeccCCCcHH
Q 028300           92 VYDVTRRETFTNLSDVWAKEVDLYS---TNQDCVKMLVGNKVDRDSER-VVSREEGIALAKEHG-SLFLECSAKTRENVE  166 (211)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~~p~viv~nK~Dl~~~~-~v~~~~~~~~~~~~~-~~~~~~Sa~~~~gv~  166 (211)
                      |||++++.+++.+.. |...+..+.   ...++|+++|+||+|+.+.+ .+..+++++++..++ .+|++|||++|.||+
T Consensus        82 v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~e~SA~~g~gv~  160 (175)
T d1ky3a_          82 VYDVTNASSFENIKS-WRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVD  160 (175)
T ss_dssp             EEETTCHHHHHTHHH-HHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTBSHH
T ss_pred             Eeecccccccchhhh-cchhhhhhhhhcccccCcEEEEecccchhhhhcchhHHHHHHHHHHcCCCeEEEEeCCCCcCHH
Confidence            999999999999887 777664332   24578999999999997653 467788888888876 789999999999999


Q ss_pred             HHHHHHHHHHHhcc
Q 028300          167 QCFEQLALKIMEVP  180 (211)
Q Consensus       167 ~l~~~i~~~~~~~~  180 (211)
                      ++|.+|++.++++.
T Consensus       161 e~f~~l~~~~l~~~  174 (175)
T d1ky3a_         161 TAFEEIARSALQQN  174 (175)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcc
Confidence            99999999887653

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=100.00  E-value=1e-32  Score=192.39  Aligned_cols=159  Identities=25%  Similarity=0.383  Sum_probs=129.6

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEEE
Q 028300           13 LSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILV   92 (211)
Q Consensus        13 ~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (211)
                      +++||+++|++|||||||+++|.+..+..+.++.+.....  +.  ...+.+.+||+||+..++..+..++..+|+++++
T Consensus         1 k~~ki~ivG~~~~GKTsLi~~l~~~~~~~~~~t~~~~~~~--~~--~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   76 (165)
T d1ksha_           1 RELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKT--LE--HRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWV   76 (165)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHTTCCCSSCCCCSSEEEEE--EE--ETTEEEEEEEECCSHHHHTTGGGGCTTCSEEEEE
T ss_pred             CcEEEEEECCCCCCHHHHHHHHcCCCCCcccceEeeeeee--cc--ccccceeeeecCcchhhhhHHHhhhhhhhcceee
Confidence            4689999999999999999999998888788887765543  22  3457899999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHH--H---HcCCeEEEeeccCCCcHHH
Q 028300           93 YDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALA--K---EHGSLFLECSAKTRENVEQ  167 (211)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~--~---~~~~~~~~~Sa~~~~gv~~  167 (211)
                      ||+++..++......|...+... ...++|++||+||+|+.+...+.  +.....  .   ..++++++|||++|.|+++
T Consensus        77 ~d~~d~~~~~~~~~~~~~~~~~~-~~~~~p~iiv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e  153 (165)
T d1ksha_          77 VDSADRQRMQDCQRELQSLLVEE-RLAGATLLIFANKQDLPGALSCN--AIQEALELDSIRSHHWRIQGCSAVTGEDLLP  153 (165)
T ss_dssp             EETTCGGGHHHHHHHHHHHHTCG-GGTTCEEEEEEECTTSTTCCCHH--HHHHHTTGGGCCSSCEEEEECCTTTCTTHHH
T ss_pred             eecccchhHHHHHHhhhhhhhhc-ccCCCceEEEEeccccccccCHH--HHHHHHHhhhhhcCCCEEEEEECCCCCCHHH
Confidence            99999999999988676666543 45789999999999996554333  222221  1   2245799999999999999


Q ss_pred             HHHHHHHHHHh
Q 028300          168 CFEQLALKIME  178 (211)
Q Consensus       168 l~~~i~~~~~~  178 (211)
                      +|+||++.+.+
T Consensus       154 ~~~~l~~~i~~  164 (165)
T d1ksha_         154 GIDWLLDDISS  164 (165)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHc
Confidence            99999998875

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-31  Score=188.41  Aligned_cols=163  Identities=23%  Similarity=0.339  Sum_probs=134.9

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEEE
Q 028300           13 LSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILV   92 (211)
Q Consensus        13 ~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (211)
                      ..+||+++|++|||||||++++.++.+....++.+..+ ...+.+++..+.+.+||++|+..+     .+++.+|++|+|
T Consensus         4 p~~ki~vlG~~~vGKTsLi~~~~~~~f~~~~~t~~~~~-~~~i~v~~~~~~l~i~Dt~g~~~~-----~~~~~ad~~ilV   77 (175)
T d2bmja1           4 PELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQY-KKEMLVDGQTHLVLIREEAGAPDA-----KFSGWADAVIFV   77 (175)
T ss_dssp             CEEEEEEECCTTTTHHHHHHHHHHSCCCCCCCSSCEEE-EEEEEETTEEEEEEEEECSSCCCH-----HHHHHCSEEEEE
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHhCCCCCcCCccceeE-EEEeecCceEEEEEEeeccccccc-----ccccccceeEEE
Confidence            47999999999999999999999999977766666555 466788999999999999997654     367889999999


Q ss_pred             EECCChhhHHHHHHHHHHHhhhh--ccCCCccEEEEeecCCCCC--CcccCHHHHHHHHHH-cCCeEEEeeccCCCcHHH
Q 028300           93 YDVTRRETFTNLSDVWAKEVDLY--STNQDCVKMLVGNKVDRDS--ERVVSREEGIALAKE-HGSLFLECSAKTRENVEQ  167 (211)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~~~~~~--~~~~~~p~viv~nK~Dl~~--~~~v~~~~~~~~~~~-~~~~~~~~Sa~~~~gv~~  167 (211)
                      ||+++++||+++.. |...+...  .....+|+++|+||.|+..  .+.+...+++.++.. ++++|++|||++|.|+++
T Consensus        78 fd~~~~~Sf~~~~~-~~~~i~~~~~~~~~~~pi~lV~~k~d~d~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~v~~  156 (175)
T d2bmja1          78 FSLEDENSFQAVSR-LHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALCADMKRCSYYETCATYGLNVDR  156 (175)
T ss_dssp             EETTCHHHHHHHHH-HHHHHHHHCC--CCCCEEEEEEECTTCCSSSCCCSCHHHHHHHHHTSTTEEEEEEBTTTTBTHHH
T ss_pred             eecccchhhhhhHH-HHHHHHHHhhcccCCccEEEEeeecCcchhhhcchhHHHHHHHHHHhCCCeEEEeCCCCCcCHHH
Confidence            99999999999988 77766433  1346789999999988753  456777788877654 568999999999999999


Q ss_pred             HHHHHHHHHHhccch
Q 028300          168 CFEQLALKIMEVPSL  182 (211)
Q Consensus       168 l~~~i~~~~~~~~~~  182 (211)
                      +|..+++.+...+..
T Consensus       157 ~F~~l~~~i~~~~~~  171 (175)
T d2bmja1         157 VFQEVAQKVVTLRKQ  171 (175)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhh
Confidence            999999988876643

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=100.00  E-value=6.4e-33  Score=193.21  Aligned_cols=157  Identities=22%  Similarity=0.375  Sum_probs=126.7

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEE
Q 028300           13 LSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIIL   91 (211)
Q Consensus        13 ~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   91 (211)
                      .++||+++|++|||||||+++|..+.+ ..+.+|.+..+..  +..  ..+.+.+||+||+..+...+..++.++|++++
T Consensus         1 ~e~ki~i~G~~~~GKTsLl~~l~~~~~~~~~~~T~~~~~~~--~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   76 (164)
T d1zd9a1           1 EEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRK--ITK--GNVTIKLWDIGGQPRFRSMWERYCRGVSAIVY   76 (164)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEE--EEE--TTEEEEEEEECCSHHHHTTHHHHHTTCSEEEE
T ss_pred             CeEEEEEECCCCCCHHHHHHHHHcCCCCCcccccceeeeee--eee--eeEEEEEeeccccccccccccccccccchhhc
Confidence            479999999999999999999999988 5677777766553  233  45789999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHH-----HHHcCCeEEEeeccCCCcHH
Q 028300           92 VYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIAL-----AKEHGSLFLECSAKTRENVE  166 (211)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~-----~~~~~~~~~~~Sa~~~~gv~  166 (211)
                      |||+++.+++......|...+... ...++|++||+||.|+.+...  ..+..+.     +...+++++++||++|.|++
T Consensus        77 v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~pi~lv~nK~Dl~~~~~--~~~i~~~~~~~~~~~~~~~~~e~Sa~~g~gv~  153 (164)
T d1zd9a1          77 MVDAADQEKIEASKNELHNLLDKP-QLQGIPVLVLGNKRDLPGALD--EKELIEKMNLSAIQDREICCYSISCKEKDNID  153 (164)
T ss_dssp             EEETTCGGGHHHHHHHHHHHHTCG-GGTTCCEEEEEECTTSTTCCC--HHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred             ccccccccccchhhhhhhhhhhhh-cccCCcEEEEEeccccchhhh--HHHHHHHHHHHHHHhCCCEEEEEeCcCCcCHH
Confidence            999999999999988555555543 567899999999999865432  2222222     12345679999999999999


Q ss_pred             HHHHHHHHHH
Q 028300          167 QCFEQLALKI  176 (211)
Q Consensus       167 ~l~~~i~~~~  176 (211)
                      ++|+||++.+
T Consensus       154 e~~~~l~~~~  163 (164)
T d1zd9a1         154 ITLQWLIQHS  163 (164)
T ss_dssp             HHHHHHHHTC
T ss_pred             HHHHHHHHcc
Confidence            9999998753

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=99.98  E-value=2.4e-33  Score=198.59  Aligned_cols=163  Identities=26%  Similarity=0.348  Sum_probs=128.0

Q ss_pred             CCceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEE
Q 028300           10 SYDLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGI   89 (211)
Q Consensus        10 ~~~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~   89 (211)
                      ...+++||+++|++|||||||+++|....+....++.+.......    ...+.+.+||++|+..+...+..++..+|++
T Consensus        13 ~~~k~~KI~lvG~~~vGKTsLi~~l~~~~~~~~~~t~~~~~~~~~----~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~i   88 (182)
T d1moza_          13 GSNKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLS----YKNLKLNVWDLGGQTSIRPYWRCYYADTAAV   88 (182)
T ss_dssp             TCSSCEEEEEEEETTSSHHHHHHHTCCSEEEEECSSTTCCEEEEE----ETTEEEEEEEEC----CCTTGGGTTTTEEEE
T ss_pred             CCCceEEEEEECCCCCCHHHHHHHHhcCCCCccccccceEEEEEe----eCCEEEEEEecccccccchhHHhhhccceeE
Confidence            567789999999999999999999998888777778776665332    2457899999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHH-----HHHcCCeEEEeeccCCCc
Q 028300           90 ILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIAL-----AKEHGSLFLECSAKTREN  164 (211)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~-----~~~~~~~~~~~Sa~~~~g  164 (211)
                      ++|||+++..++.+....|...+... ...+.|++||+||+|+.+..  ...+....     +...+++|++|||++|.|
T Consensus        89 i~v~d~~d~~s~~~~~~~l~~~~~~~-~~~~~piliv~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~e~SA~~g~g  165 (182)
T d1moza_          89 IFVVDSTDKDRMSTASKELHLMLQEE-ELQDAALLVFANKQDQPGAL--SASEVSKELNLVELKDRSWSIVASSAIKGEG  165 (182)
T ss_dssp             EEEEETTCTTTHHHHHHHHHHHTTSS-TTSSCEEEEEEECTTSTTCC--CHHHHHHHTTTTTCCSSCEEEEEEBGGGTBT
T ss_pred             EEEeeecccccchhHHHHHHHHHHhh-ccCCcceEEEEEeecccccc--CHHHHHHHHHHHHHhhCCCEEEEEECCCCCC
Confidence            99999999999999988555555543 56789999999999986432  22332221     223456799999999999


Q ss_pred             HHHHHHHHHHHHHhc
Q 028300          165 VEQCFEQLALKIMEV  179 (211)
Q Consensus       165 v~~l~~~i~~~~~~~  179 (211)
                      |+++|+||++.+.+.
T Consensus       166 v~e~~~~l~~~i~~~  180 (182)
T d1moza_         166 ITEGLDWLIDVIKEE  180 (182)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHc
Confidence            999999999988764

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=99.98  E-value=1.4e-32  Score=193.65  Aligned_cols=160  Identities=24%  Similarity=0.366  Sum_probs=127.2

Q ss_pred             CCCceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcE
Q 028300            9 NSYDLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQG   88 (211)
Q Consensus         9 ~~~~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~   88 (211)
                      .+.++++||+++|++|||||||+++|.++.+....++.+.+...  +..  ..+.+.+||++|++.+...+..+++.+|+
T Consensus        11 ~~~~~~~kI~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~--i~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~   86 (176)
T d1fzqa_          11 SAPDQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKS--VQS--QGFKLNVWDIGGQRKIRPYWRSYFENTDI   86 (176)
T ss_dssp             SCCSSCEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEEEEE--EEE--TTEEEEEEECSSCGGGHHHHHHHHTTCSE
T ss_pred             CCCCCEEEEEEECCCCCCHHHHHHHHhcCCCCcceeeeeeeEEE--ecc--CCeeEeEeeccccccchhHHHHHhhccce
Confidence            44567899999999999999999999999887666666655442  333  34789999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHH-----HHHcCCeEEEeeccCCC
Q 028300           89 IILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIAL-----AKEHGSLFLECSAKTRE  163 (211)
Q Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~-----~~~~~~~~~~~Sa~~~~  163 (211)
                      +++|||+++..++.++...|...... ....++|+++|+||+|+.+....  ....+.     +....+++++|||++|.
T Consensus        87 ii~v~d~~d~~s~~~~~~~~~~~~~~-~~~~~~pillv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~~~~SA~tg~  163 (176)
T d1fzqa_          87 LIYVIDSADRKRFEETGQELTELLEE-EKLSCVPVLIFANKQDLLTAAPA--SEIAEGLNLHTIRDRVWQIQSCSALTGE  163 (176)
T ss_dssp             EEEEEETTCGGGHHHHHHHHHHHTTC-GGGTTCCEEEEEECTTSTTCCCH--HHHHHHTTGGGCCSSCEEEEECCTTTCT
T ss_pred             eEEeeccccccchhhhhhhhhhhhhh-hccCCCeEEEEEEeccccccccH--HHHHHHHHHHHHHhcCCEEEEEeCCCCC
Confidence            99999999999999998855555443 35678999999999999654332  222221     12234579999999999


Q ss_pred             cHHHHHHHHHHH
Q 028300          164 NVEQCFEQLALK  175 (211)
Q Consensus       164 gv~~l~~~i~~~  175 (211)
                      |++++|+||++.
T Consensus       164 gv~e~~~~l~~~  175 (176)
T d1fzqa_         164 GVQDGMNWVCKN  175 (176)
T ss_dssp             THHHHHHHHHHT
T ss_pred             CHHHHHHHHHhc
Confidence            999999999875

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=99.97  E-value=2.5e-32  Score=191.78  Aligned_cols=158  Identities=22%  Similarity=0.379  Sum_probs=126.1

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEE
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIIL   91 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   91 (211)
                      .+++||+++|++|||||||+++|..+.+....++.+.....    .....+.+.+||+||...++..+..+++++|++++
T Consensus        10 ~k~~kIvlvG~~~vGKTSli~rl~~~~~~~~~~t~~~~~~~----~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ii~   85 (173)
T d1e0sa_          10 NKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVET----VTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF   85 (173)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHTTCCCCEEEEEETTEEEEE----EEETTEEEEEEEESCCGGGHHHHGGGTTTCCEEEE
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHhcCCCCCccceeeeeEEE----eeccceeeEEecCCCcchhhhHHHhhhcccceEEE
Confidence            45799999999999999999999988876666666655442    22345788999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHH-----HHHHcCCeEEEeeccCCCcHH
Q 028300           92 VYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIA-----LAKEHGSLFLECSAKTRENVE  166 (211)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~-----~~~~~~~~~~~~Sa~~~~gv~  166 (211)
                      |||+++.+++..+...|...+... ....+|+++++||+|+.+...  ..++..     .+...++.+++|||++|+||+
T Consensus        86 v~D~s~~~~~~~~~~~l~~~~~~~-~~~~~piiiv~NK~Dl~~~~~--~~~i~~~~~~~~~~~~~~~~~e~SA~tg~gv~  162 (173)
T d1e0sa_          86 VVDCADRDRIDEARQELHRIINDR-EMRDAIILIFANKQDLPDAMK--PHEIQEKLGLTRIRDRNWYVQPSCATSGDGLY  162 (173)
T ss_dssp             EEETTCGGGHHHHHHHHHHHHTSG-GGTTCEEEEEEECTTSTTCCC--HHHHHHHTTGGGCCSSCEEEEECBTTTTBTHH
T ss_pred             EEecccchhHHHHHHHHHHHhhhc-ccccceeeeeeeccccccccc--HHHHHHHHHHHHHHhCCCEEEEeeCCCCcCHH
Confidence            999999999999988566655543 567899999999999865432  222222     222335679999999999999


Q ss_pred             HHHHHHHHHH
Q 028300          167 QCFEQLALKI  176 (211)
Q Consensus       167 ~l~~~i~~~~  176 (211)
                      ++|+||.+.+
T Consensus       163 e~~~~l~~~~  172 (173)
T d1e0sa_         163 EGLTWLTSNY  172 (173)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHhc
Confidence            9999998764

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=99.96  E-value=4.3e-29  Score=172.62  Aligned_cols=157  Identities=23%  Similarity=0.418  Sum_probs=121.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEEEEE
Q 028300           15 FKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYD   94 (211)
Q Consensus        15 ~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d   94 (211)
                      +||+++|++|||||||+++|.++++....+.......    ......+.+.+||++|...+...+...+..++++++++|
T Consensus         1 ikivlvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~d   76 (160)
T d1r8sa_           1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE----TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD   76 (160)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSCCEE----EEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccccceeeEEE----EEeeeeEEEEEecCCCcccchhhhhhhhccceeEEEEEE
Confidence            5899999999999999999999888544443333222    334566889999999999998889999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCH---HHHHHHHHHcCCeEEEeeccCCCcHHHHHHH
Q 028300           95 VTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSR---EEGIALAKEHGSLFLECSAKTRENVEQCFEQ  171 (211)
Q Consensus        95 ~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~---~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~  171 (211)
                      .+++.++..+...+...+. .......|+++++||.|+.+......   .....++...+++|++|||++|.|++++|+|
T Consensus        77 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~v~~k~d~~~~~~~~~i~~~~~~~~~~~~~~~~~~~SAktg~gi~e~~~~  155 (160)
T d1r8sa_          77 SNDRERVNEAREELMRMLA-EDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDW  155 (160)
T ss_dssp             TTCGGGHHHHHHHHHHHHT-CGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHH
T ss_pred             ecChHHHHHHHHHHHHHHH-hhcccCceEEEEeecccccccccHHHHHHHHHHHHHhhCCCEEEEeECCCCCCHHHHHHH
Confidence            9999999999884444444 33567889999999999865432211   1111223334678999999999999999999


Q ss_pred             HHHHH
Q 028300          172 LALKI  176 (211)
Q Consensus       172 i~~~~  176 (211)
                      |.+++
T Consensus       156 l~~~l  160 (160)
T d1r8sa_         156 LSNQL  160 (160)
T ss_dssp             HHHHC
T ss_pred             HHhcC
Confidence            98764

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=99.95  E-value=2.7e-27  Score=164.80  Aligned_cols=163  Identities=23%  Similarity=0.358  Sum_probs=127.3

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEE
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIIL   91 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   91 (211)
                      ++++||+++|.+|||||||++++.++.+....++.+....    ......+.+.+||.++...+.......+...+++++
T Consensus         3 ~ke~kI~ivG~~~vGKSSLi~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (169)
T d1upta_           3 TREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVE----TVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIY   78 (169)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEEEE----EEEETTEEEEEEEECCCGGGGGGGGGGCTTCSEEEE
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhCCCCcceecccceeee----eeccCceEEEEeeccccccccccchhhhhhhhhhhh
Confidence            4579999999999999999999999998766666665443    222245678899999999888889999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccC---HHHHHHHHHHcCCeEEEeeccCCCcHHHH
Q 028300           92 VYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVS---REEGIALAKEHGSLFLECSAKTRENVEQC  168 (211)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~---~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l  168 (211)
                      ++|+.+..++......+....... .....|+++++||.|+.......   ......++...+++|+++||++|.||+++
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~iv~nk~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gv~e~  157 (169)
T d1upta_          79 VVDSCDRDRIGISKSELVAMLEEE-ELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEA  157 (169)
T ss_dssp             EEETTCCTTHHHHHHHHHHHHTCG-GGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHH
T ss_pred             hhhhhhcchhhhccchhhhhhhhh-ccccceEEEEEeeccccccccHHHHHHHHHHHHHhcCCCEEEEEeCCCCCCHHHH
Confidence            999999888888877555555433 56789999999999996543321   11111223345678999999999999999


Q ss_pred             HHHHHHHHHhc
Q 028300          169 FEQLALKIMEV  179 (211)
Q Consensus       169 ~~~i~~~~~~~  179 (211)
                      |++|.+.+.++
T Consensus       158 ~~~l~~~l~~k  168 (169)
T d1upta_         158 MEWLVETLKSR  168 (169)
T ss_dssp             HHHHHHHHHTC
T ss_pred             HHHHHHHHHhC
Confidence            99999988664

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=99.95  E-value=5.1e-28  Score=170.04  Aligned_cols=159  Identities=25%  Similarity=0.365  Sum_probs=120.4

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEE
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIIL   91 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   91 (211)
                      .+++||+|+|.+|||||||++++.+.++....++.+.......  .  ....+.+||+++.......+...+..++++++
T Consensus        13 ~k~~kI~vvG~~~~GKSsLi~rl~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~i~   88 (177)
T d1zj6a1          13 HQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIV--I--NNTRFLMWDIGGQESLRSSWNTYYTNTEFVIV   88 (177)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTTSCEEEECCSCSSCEEEE--E--TTEEEEEEECCC----CGGGHHHHTTCCEEEE
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHhcCCCCccccccceeEEEEe--e--cceEEEEeccccccccccchhhhhccceeeee
Confidence            4679999999999999999999999988665566655444222  2  34688999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHH-----HHcCCeEEEeeccCCCcHH
Q 028300           92 VYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALA-----KEHGSLFLECSAKTRENVE  166 (211)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~~~gv~  166 (211)
                      ++|.++.+++......+..... .......|+++|+||+|+.....  ..+.....     ...+++|+++||++|+|++
T Consensus        89 v~d~~d~~~~~~~~~~~~~~~~-~~~~~~~p~iiv~nK~Dl~~~~~--~~~i~~~~~~~~~~~~~~~~~~~Sa~tg~Gi~  165 (177)
T d1zj6a1          89 VVDSTDRERISVTREELYKMLA-HEDLRKAGLLIFANKQDVKECMT--VAEISQFLKLTSIKDHQWHIQACCALTGEGLC  165 (177)
T ss_dssp             EEETTCTTTHHHHHHHHHHHHT-SGGGTTCEEEEEEECTTSTTCCC--HHHHHHHHTGGGCCSSCEEEEECBTTTTBTHH
T ss_pred             ecccccccchhhhhhhhhhhhh-cccccceEEEEEEEcccccccCc--HHHHHHHHHHHhhHhcCCEEEEEeCCCCCCHH
Confidence            9999999999888763433333 33567999999999999865443  22222222     2235679999999999999


Q ss_pred             HHHHHHHHHHH
Q 028300          167 QCFEQLALKIM  177 (211)
Q Consensus       167 ~l~~~i~~~~~  177 (211)
                      ++|+||.+++.
T Consensus       166 e~~~~L~~~lk  176 (177)
T d1zj6a1         166 QGLEWMMSRLK  176 (177)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHHhC
Confidence            99999998763

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.94  E-value=1.4e-26  Score=162.87  Aligned_cols=165  Identities=21%  Similarity=0.171  Sum_probs=113.6

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhh--------ccchhhhcc
Q 028300           13 LSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERF--------RTLTSSYYR   84 (211)
Q Consensus        13 ~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~--------~~~~~~~~~   84 (211)
                      ..-.|+|+|.+|||||||+++|++..........+++..............+.+||+||....        .......++
T Consensus         4 ~~~~I~lvG~~~~GKSSLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~   83 (178)
T d1wf3a1           4 YSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEALA   83 (178)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTS
T ss_pred             cCcEEEEECCCCCCHHHHHHHHhCCCceeecccCCcccccccceeeeeeeeeeecccccccccccccchhcccccccccc
Confidence            445799999999999999999998876444444444433333333233457899999996432        222344578


Q ss_pred             CCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcC-CeEEEeeccCCC
Q 028300           85 GAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHG-SLFLECSAKTRE  163 (211)
Q Consensus        85 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~  163 (211)
                      ++|++++|+|+++......  ..|...++..  ..++|+++|+||+|+....   .+....+....+ ..++++||+++.
T Consensus        84 ~ad~il~v~D~~~~~~~~~--~~i~~~l~~~--~~~~piilv~NK~Dl~~~~---~~~~~~~~~~~~~~~~~~iSA~~~~  156 (178)
T d1wf3a1          84 DVNAVVWVVDLRHPPTPED--ELVARALKPL--VGKVPILLVGNKLDAAKYP---EEAMKAYHELLPEAEPRMLSALDER  156 (178)
T ss_dssp             SCSEEEEEEETTSCCCHHH--HHHHHHHGGG--TTTSCEEEEEECGGGCSSH---HHHHHHHHHTSTTSEEEECCTTCHH
T ss_pred             cccceeeeechhhhhcccc--cchhhheecc--ccchhhhhhhcccccccCH---HHHHHHHHhhcccCceEEEecCCCC
Confidence            9999999999988644332  3255555543  4578999999999985532   122233333343 468999999999


Q ss_pred             cHHHHHHHHHHHHHhccchhc
Q 028300          164 NVEQCFEQLALKIMEVPSLLE  184 (211)
Q Consensus       164 gv~~l~~~i~~~~~~~~~~~~  184 (211)
                      |+++++++|.+.+.+....++
T Consensus       157 gi~~L~~~i~~~lpe~p~~~p  177 (178)
T d1wf3a1         157 QVAELKADLLALMPEGPFFYP  177 (178)
T ss_dssp             HHHHHHHHHHTTCCBCCCSSC
T ss_pred             CHHHHHHHHHHhCCCCCCCCC
Confidence            999999999987766555443

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=8.3e-26  Score=156.46  Aligned_cols=152  Identities=23%  Similarity=0.322  Sum_probs=121.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEEEEEC
Q 028300           16 KILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDV   95 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~   95 (211)
                      ||+++|++|||||||+++|.++.+..+.++.+....    ........+.+||+++...+...+...+..++++++++|.
T Consensus         2 KI~liG~~nvGKSSLln~l~~~~~~~~~~t~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~   77 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSE----ELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDA   77 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCCCCCCCSCEEE----EECCTTCCEEEEECCCSGGGGGGGGGGCTTCSEEEEEEET
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCeeeceeeEeEE----EeccCCeeEEEEeeccchhhhhhHhhhhhheeeeeeeccc
Confidence            799999999999999999999998878887776665    3334456788999999998888899999999999999999


Q ss_pred             CChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHH------------HcCCeEEEeeccCCC
Q 028300           96 TRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAK------------EHGSLFLECSAKTRE  163 (211)
Q Consensus        96 ~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~------------~~~~~~~~~Sa~~~~  163 (211)
                      ++..++......+. .........+.|+++++||.|+....  ...+..+...            ...+.+++|||++|+
T Consensus        78 ~~~~~~~~~~~~~~-~~~~~~~~~~~~i~i~~~k~d~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~  154 (166)
T d2qtvb1          78 ADPERFDEARVELD-ALFNIAELKDVPFVILGNKIDAPNAV--SEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRN  154 (166)
T ss_dssp             TCGGGHHHHHHHHH-HHHTCTTTTTCCEEEEEECTTSSSCC--CHHHHHHHHTCSSCCC---CCSSCCEEEEEEBTTTTB
T ss_pred             cchhhhhhhhHHHH-hhhhhhccCCceEEEEeccccccccC--CHHHHHHHhhhhhhhHHHhhcccCCCEEEEeeCCCCC
Confidence            99999988887444 44444467789999999999985432  3333322221            123469999999999


Q ss_pred             cHHHHHHHHHH
Q 028300          164 NVEQCFEQLAL  174 (211)
Q Consensus       164 gv~~l~~~i~~  174 (211)
                      ||+++|+||.+
T Consensus       155 Gv~e~~~~l~~  165 (166)
T d2qtvb1         155 GYLEAFQWLSQ  165 (166)
T ss_dssp             SHHHHHHHHTT
T ss_pred             CHHHHHHHHhC
Confidence            99999999864

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=99.93  E-value=1.8e-26  Score=159.63  Aligned_cols=152  Identities=20%  Similarity=0.243  Sum_probs=109.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhc--------cchhhhccCC
Q 028300           15 FKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFR--------TLTSSYYRGA   86 (211)
Q Consensus        15 ~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~--------~~~~~~~~~~   86 (211)
                      +||+++|.+|||||||+|+|++.........++++.......+...+..+.+||++|..+..        ......+..+
T Consensus         2 ~kI~lvG~~nvGKSsLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~   81 (161)
T d2gj8a1           2 MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQA   81 (161)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHHHTC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceEeecccccccceEeeeeeccCceeeeccccccccccccchhHHHHHHHHHHHhc
Confidence            79999999999999999999988764444444444433333333344678899999943321        1234567889


Q ss_pred             cEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHH
Q 028300           87 QGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVE  166 (211)
Q Consensus        87 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~  166 (211)
                      |++++++|..+..++..... |...+...  ..+.|+++|+||+|+.......       ....+.+++++||+++.|++
T Consensus        82 d~~i~~~d~~~~~~~~~~~~-~~~~~~~~--~~~~~iilv~NK~Dl~~~~~~~-------~~~~~~~~~~iSAk~~~gi~  151 (161)
T d2gj8a1          82 DRVLFMVDGTTTDAVDPAEI-WPEFIARL--PAKLPITVVRNKADITGETLGM-------SEVNGHALIRLSARTGEGVD  151 (161)
T ss_dssp             SEEEEEEETTTCCCCSHHHH-CHHHHHHS--CTTCCEEEEEECHHHHCCCCEE-------EEETTEEEEECCTTTCTTHH
T ss_pred             cccceeeccccccchhhhhh-hhhhhhhc--ccccceeeccchhhhhhhHHHH-------HHhCCCcEEEEECCCCCCHH
Confidence            99999999998877666665 55555543  4578999999999985433211       11235689999999999999


Q ss_pred             HHHHHHHHHH
Q 028300          167 QCFEQLALKI  176 (211)
Q Consensus       167 ~l~~~i~~~~  176 (211)
                      +++++|.+.+
T Consensus       152 ~L~~~l~~~l  161 (161)
T d2gj8a1         152 VLRNHLKQSM  161 (161)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHhhC
Confidence            9999998864

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.92  E-value=1.4e-24  Score=153.11  Aligned_cols=158  Identities=22%  Similarity=0.313  Sum_probs=115.2

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEE
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIIL   91 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   91 (211)
                      .+++||+++|++|||||||+++|.++.+....++.+.+....  ...+  ..+.+||+.+...+...+.......+++++
T Consensus        11 ~k~~kI~lvG~~~vGKTsLl~~l~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (186)
T d1f6ba_          11 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEEL--TIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIVF   86 (186)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSCC------CCCCCSCEEE--EETT--EEEEEEEECC----CCGGGGGGGGCSEEEE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCcceecccccceeEE--Eecc--cccccccccchhhhhhHHhhhhcccceeee
Confidence            567999999999999999999999998876667666665533  3333  467899999999988889999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHH-----------------cCCeE
Q 028300           92 VYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKE-----------------HGSLF  154 (211)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~-----------------~~~~~  154 (211)
                      ++|.++...+......+...... ....+.|+++++||.|+...  +...+..+....                 .++++
T Consensus        87 ~~d~~d~~~~~~~~~~~~~~~~~-~~~~~~~~li~~~K~D~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (186)
T d1f6ba_          87 LVDCADHERLLESKEELDSLMTD-ETIANVPILILGNKIDRPEA--ISEERLREMFGLYGQTTGKGSVSLKELNARPLEV  163 (186)
T ss_dssp             EEETTCGGGHHHHHHHHHHHHTC-GGGTTSCEEEEEECTTSTTC--CCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEE
T ss_pred             eeeccCccchHHHHHHHHHhhcc-cccCCCceEEEEeccCcccc--CCHHHHHHHHhhcccchhhhhhhHHHhhcCCCEE
Confidence            99999999888887744444433 25678999999999998544  233333333321                 12458


Q ss_pred             EEeeccCCCcHHHHHHHHHHHH
Q 028300          155 LECSAKTRENVEQCFEQLALKI  176 (211)
Q Consensus       155 ~~~Sa~~~~gv~~l~~~i~~~~  176 (211)
                      ++|||++|+|++++|+||.+.+
T Consensus       164 ~~~SA~tg~Gi~e~~~~l~~~i  185 (186)
T d1f6ba_         164 FMCSVLKRQGYGEGFRWMAQYI  185 (186)
T ss_dssp             EECBTTTTBSHHHHHHHHHTTC
T ss_pred             EEEeCCCCCCHHHHHHHHHHhh
Confidence            9999999999999999998754

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.92  E-value=7.4e-26  Score=161.73  Aligned_cols=161  Identities=16%  Similarity=0.167  Sum_probs=123.2

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEEE
Q 028300           13 LSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILV   92 (211)
Q Consensus        13 ~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (211)
                      +++||+++|..|||||||+++|..+.+. +.||.|....    .+......+.+||++|+..+...+..+++.+++++++
T Consensus         1 ke~Kiv~lG~~~vGKTsll~r~~~~~~~-~~pTiG~~~~----~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~   75 (200)
T d2bcjq2           1 RELKLLLLGTGESGKSTFIKQMRIIHGS-GVPTTGIIEY----PFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFL   75 (200)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHTSS-CCCCCSCEEE----EEECSSCEEEEEECCCSTTGGGGGGGGCSSCSEEEEE
T ss_pred             CeeEEEEECCCCCCHHHHHHHHhCCCCC-CCceeeEEEE----EEeccceeeeeccccccccccccccccccccceeeEe
Confidence            4799999999999999999999988874 5688887655    3334567899999999999999999999999999999


Q ss_pred             EECCChh----------hHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCc----------------ccCHHHHHHH
Q 028300           93 YDVTRRE----------TFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSER----------------VVSREEGIAL  146 (211)
Q Consensus        93 ~d~~~~~----------s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~----------------~v~~~~~~~~  146 (211)
                      +|.++.+          .+.+....|...+... ...+.|+++++||.|+...+                .-.......+
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~-~~~~~~~~~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (200)
T d2bcjq2          76 VALSEYDQVLVESDNENRMEESKALFRTIITYP-WFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREF  154 (200)
T ss_dssp             EEGGGGGCBCSSCTTSBHHHHHHHHHHHHHHCG-GGSSSEEEEEEECHHHHHHHTTTSCHHHHSTTCCSCSSCHHHHHHH
T ss_pred             eeccchhhhhhhhccccchHHHHHHHHHHHhhh-hccCccEEEecchhhhhhhcccchHHHHhcccccCCchhHHHHHHH
Confidence            9988754          2444455588887655 46789999999999973211                1112222222


Q ss_pred             HH----H------cCCeEEEeeccCCCcHHHHHHHHHHHHHhc
Q 028300          147 AK----E------HGSLFLECSAKTRENVEQCFEQLALKIMEV  179 (211)
Q Consensus       147 ~~----~------~~~~~~~~Sa~~~~gv~~l~~~i~~~~~~~  179 (211)
                      ..    .      ..+.+++|||+++.+|+++|+.|.+.+.+.
T Consensus       155 i~~~f~~~~~~~~~~~~~~~tSAk~~~ni~~vF~~i~~~I~~~  197 (200)
T d2bcjq2         155 ILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQL  197 (200)
T ss_dssp             HHHHHHTTCSCTTSCEEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcccCCCceEEEEeEEEcCHhHHHHHHHHHHHHHHH
Confidence            21    1      124478999999999999999998887643

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.92  E-value=6.1e-25  Score=153.43  Aligned_cols=158  Identities=23%  Similarity=0.187  Sum_probs=101.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhh---------hccchhhhccCC
Q 028300           16 KILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER---------FRTLTSSYYRGA   86 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~---------~~~~~~~~~~~~   86 (211)
                      +|+++|++|||||||+++|++..........+++.......+......+.+||++|...         +.......+..+
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~a   81 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIREA   81 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCcceecccCceeeccccccccccccccccccccceeeeeccccccccccccccccccC
Confidence            69999999999999999999876654455555544443444444556789999999321         122344557889


Q ss_pred             cEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHH
Q 028300           87 QGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVE  166 (211)
Q Consensus        87 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~  166 (211)
                      |+++++.+.++....... . +...+...    ++|+++|+||+|+.++  ...+...++.......++++||++|.|++
T Consensus        82 d~i~~~~~~~~~~~~~~~-~-~~~~l~~~----~~pviiv~NK~Dl~~~--~~~~~~~~~~~~~~~~~i~iSAk~g~gid  153 (171)
T d1mkya1          82 DLVLFVVDGKRGITKEDE-S-LADFLRKS----TVDTILVANKAENLRE--FEREVKPELYSLGFGEPIPVSAEHNINLD  153 (171)
T ss_dssp             SEEEEEEETTTCCCHHHH-H-HHHHHHHH----TCCEEEEEESCCSHHH--HHHHTHHHHGGGSSCSCEECBTTTTBSHH
T ss_pred             cEEEEeeccccccccccc-c-cccccccc----cccccccchhhhhhhh--hhhHHHHHHHhcCCCCeEEEecCCCCCHH
Confidence            999999998876544332 2 55555543    7899999999998532  12222222222233468999999999999


Q ss_pred             HHHHHHHHHHHhccc
Q 028300          167 QCFEQLALKIMEVPS  181 (211)
Q Consensus       167 ~l~~~i~~~~~~~~~  181 (211)
                      +++++|.+.+.+...
T Consensus       154 ~L~~~i~~~l~e~~~  168 (171)
T d1mkya1         154 TMLETIIKKLEEKGL  168 (171)
T ss_dssp             HHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHhCCCCCC
Confidence            999999998876543

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.91  E-value=1.8e-24  Score=152.24  Aligned_cols=161  Identities=20%  Similarity=0.138  Sum_probs=106.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhh----cc---chhhhccCCcE
Q 028300           16 KILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERF----RT---LTSSYYRGAQG   88 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~----~~---~~~~~~~~~d~   88 (211)
                      .|+++|.+|||||||+|+|++...........+...............+.+||+||....    ..   .....+..+++
T Consensus         3 ~VaivG~~nvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~~   82 (180)
T d1udxa2           3 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTRV   82 (180)
T ss_dssp             SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSSE
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCceeccCCCceeeeeceeeecCCCeEEEcCCCeeecCchHHHHHHHHHHHHHHhhhh
Confidence            489999999999999999997765222222222222333344444557899999994321    11   12345678899


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHhhhh-ccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHH
Q 028300           89 IILVYDVTRRETFTNLSDVWAKEVDLY-STNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQ  167 (211)
Q Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~  167 (211)
                      +++++|..... ...... +...+... ....++|+++|+||+|+...+.+  +...+.....+.+++.+||++|.|+++
T Consensus        83 ~~~~~d~~~~~-~~~~~~-~~~~~~~~~~~~~~~p~iiv~NK~D~~~~~~~--~~~~~~~~~~~~~~~~iSA~tg~gid~  158 (180)
T d1udxa2          83 LLYVLDAADEP-LKTLET-LRKEVGAYDPALLRRPSLVALNKVDLLEEEAV--KALADALAREGLAVLPVSALTGAGLPA  158 (180)
T ss_dssp             EEEEEETTSCH-HHHHHH-HHHHHHHHCHHHHHSCEEEEEECCTTSCHHHH--HHHHHHHHTTTSCEEECCTTTCTTHHH
T ss_pred             hhhhccccccc-ccchhh-hhhhhhccccccchhhhhhhhhhhhhhhHHHH--HHHHHHHHhcCCeEEEEEcCCCCCHHH
Confidence            99999987542 222222 22222211 12346799999999999655432  334445556788999999999999999


Q ss_pred             HHHHHHHHHHhcc
Q 028300          168 CFEQLALKIMEVP  180 (211)
Q Consensus       168 l~~~i~~~~~~~~  180 (211)
                      +++.|.+.+....
T Consensus       159 L~~~i~~~l~~~~  171 (180)
T d1udxa2         159 LKEALHALVRSTP  171 (180)
T ss_dssp             HHHHHHHHHHTSC
T ss_pred             HHHHHHHHHhhcC
Confidence            9999988876543

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.91  E-value=2.5e-24  Score=153.12  Aligned_cols=157  Identities=20%  Similarity=0.195  Sum_probs=114.9

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEEE
Q 028300           13 LSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILV   92 (211)
Q Consensus        13 ~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (211)
                      +++||+++|..|||||||+++|....++    +.+..  ..  .+......+.+||++|+..+...+..+++.++++++|
T Consensus         1 ~e~KivllG~~~vGKTsl~~r~~~~~~~----t~~~~--~~--~~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~~~~~i~v   72 (195)
T d1svsa1           1 REVKLLLLGAGESGKSTIVKQMKIIHEA----GTGIV--ET--HFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFC   72 (195)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHHSC----CCSEE--EE--EEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHhhCCCC----CccEE--EE--EEEeeeeeeeeeccccccccccchhhcccCCceeeeE
Confidence            4799999999999999999999876653    22322  22  3333557889999999999999999999999999999


Q ss_pred             EECCChhhH----------HHHHHHHHHHhhhhccCCCccEEEEeecCCCCCC---------------cccCHHHHHHHH
Q 028300           93 YDVTRRETF----------TNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSE---------------RVVSREEGIALA  147 (211)
Q Consensus        93 ~d~~~~~s~----------~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~---------------~~v~~~~~~~~~  147 (211)
                      +|+++.+++          .+....|...+... ...+.|+++++||.|+...               ......+.....
T Consensus        73 ~d~~~~~~~~~~~~~~~~~~e~~~~~~~i~~~~-~~~~~~~~lv~Nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (195)
T d1svsa1          73 VALSDYDLVLAEDEEMNRMHESMKLFDSICNNK-WFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYI  151 (195)
T ss_dssp             EEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTCG-GGTTSEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSHHHHHHHH
T ss_pred             EeecccchHHHHhhhhHHHHHHHHHHHHHhccc-ccCCCCEEEEeccchhhhhhccchHHHHHhhhhcCcccHHHHHHHH
Confidence            999887654          33444466666544 5678899999999996211               111122221111


Q ss_pred             -----HH------cCCeEEEeeccCCCcHHHHHHHHHHHHHh
Q 028300          148 -----KE------HGSLFLECSAKTRENVEQCFEQLALKIME  178 (211)
Q Consensus       148 -----~~------~~~~~~~~Sa~~~~gv~~l~~~i~~~~~~  178 (211)
                           ..      ..+.+++|||+++.+|+++|+.+.+.+++
T Consensus       152 ~~~f~~~~~~~~~~~~~~~~tSA~~~~nv~~~F~~v~~~il~  193 (195)
T d1svsa1         152 QCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIK  193 (195)
T ss_dssp             HHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcccCCCcceeEEEEeECCHhHHHHHHHHHHHHHh
Confidence                 11      13457899999999999999999887765

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.90  E-value=9.5e-24  Score=149.19  Aligned_cols=161  Identities=22%  Similarity=0.214  Sum_probs=105.1

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEE--EEEEECCEEEEEEEEeCCChhhh------------c
Q 028300           11 YDLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKI--KLLTVAGKRLKLTIWDTAGQERF------------R   76 (211)
Q Consensus        11 ~~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~D~~g~~~~------------~   76 (211)
                      ....+||+|+|.+|||||||+|+|++..........+++...  ..+..++  ..+.++|+||....            .
T Consensus         5 ~~~~~kV~iiG~~~~GKSTLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~~~   82 (186)
T d1mkya2           5 ITDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDG--RKYVFVDTAGLRRKSRVEPRTVEKYSN   82 (186)
T ss_dssp             CCSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETT--EEEEESSCSCC-----------CCSCC
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHCCCcceeecccccccccceeeeccCC--ceeeeeccCCccccccccccccccchh
Confidence            345799999999999999999999987652222222222222  2233333  45788899985322            1


Q ss_pred             cchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHH----c-C
Q 028300           77 TLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKE----H-G  151 (211)
Q Consensus        77 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~----~-~  151 (211)
                      ......++.+|++++|+|++....-.. .. +...+..    .+.|+++|+||+|+.........+.......    . .
T Consensus        83 ~~~~~~~~~~dvii~v~d~~~~~~~~~-~~-~~~~~~~----~~~~~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~  156 (186)
T d1mkya2          83 YRVVDSIEKADVVVIVLDATQGITRQD-QR-MAGLMER----RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDY  156 (186)
T ss_dssp             HHHHHHHHHCSEEEEEEETTTCCCHHH-HH-HHHHHHH----TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTT
T ss_pred             HHHHHHHhcCCEEEEeecccccchhhH-HH-HHHHHHH----cCCceeeeccchhhhcchhhhhhhHHHHHHHHhcccCC
Confidence            223445678999999999987543222 21 4444433    4789999999999866555444444333332    1 3


Q ss_pred             CeEEEeeccCCCcHHHHHHHHHHHHHhc
Q 028300          152 SLFLECSAKTRENVEQCFEQLALKIMEV  179 (211)
Q Consensus       152 ~~~~~~Sa~~~~gv~~l~~~i~~~~~~~  179 (211)
                      ++++++||++|.|+++++++|.+.+...
T Consensus       157 ~~i~~vSa~~g~gv~~L~~~i~~~~~~~  184 (186)
T d1mkya2         157 SPLIFTSADKGWNIDRMIDAMNLAYASY  184 (186)
T ss_dssp             SCEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             CeEEEEeCCCCCCHHHHHHHHHHHHHhC
Confidence            5799999999999999999998776543

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.90  E-value=5.7e-24  Score=149.47  Aligned_cols=162  Identities=14%  Similarity=0.129  Sum_probs=106.7

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCC------ccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccC
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFISSSVDDLSP------TIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRG   85 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~   85 (211)
                      -+.++|+++|++++|||||+|+|++.......+      ..+.+...........+..+.++|++|+.++.......+..
T Consensus         3 ~k~inIaiiG~~naGKSTL~n~L~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~l~~   82 (179)
T d1wb1a4           3 FKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAADI   82 (179)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHHHHHHHHHHTTS
T ss_pred             CCCEEEEEEeCCCCcHHHHHHHHHHhcCceecccccceeeeeeeccccccccccCCccccccccccccccccchhhhhhh
Confidence            467899999999999999999999644211111      11221211111122234568899999999888888888999


Q ss_pred             CcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCH--HHHHHHHHH----cCCeEEEeec
Q 028300           86 AQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSR--EEGIALAKE----HGSLFLECSA  159 (211)
Q Consensus        86 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~--~~~~~~~~~----~~~~~~~~Sa  159 (211)
                      +|++++++|+++...... .. ....+.    ..++|+++|+||+|+...+....  .....+...    ...+++++||
T Consensus        83 ~d~~ilv~d~~~g~~~~~-~~-~~~~~~----~~~~p~iiv~NKiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~iSA  156 (179)
T d1wb1a4          83 IDLALIVVDAKEGPKTQT-GE-HMLILD----HFNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISA  156 (179)
T ss_dssp             CCEEEEEEETTTCSCHHH-HH-HHHHHH----HTTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEECCT
T ss_pred             ccccccccccccccchhh-hh-hhhhhh----hcCCcceeccccccccCHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEc
Confidence            999999999997533222 22 222222    34789999999999865543221  111222222    2357999999


Q ss_pred             cCCCcHHHHHHHHHHHHHhc
Q 028300          160 KTRENVEQCFEQLALKIMEV  179 (211)
Q Consensus       160 ~~~~gv~~l~~~i~~~~~~~  179 (211)
                      ++|.|++++++.|.+.+.+.
T Consensus       157 ~~g~gi~eL~~~I~~~l~~~  176 (179)
T d1wb1a4         157 KTGFGVDELKNLIITTLNNA  176 (179)
T ss_dssp             TTCTTHHHHHHHHHHHHHHS
T ss_pred             cCCcCHHHHHHHHHhcCCcc
Confidence            99999999999999877654

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.90  E-value=5.8e-24  Score=146.75  Aligned_cols=150  Identities=19%  Similarity=0.172  Sum_probs=102.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhc---------cchhhhccC
Q 028300           15 FKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFR---------TLTSSYYRG   85 (211)
Q Consensus        15 ~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~---------~~~~~~~~~   85 (211)
                      +||+++|.+|||||||+|+|++.........++.+...........+..+.+||+||.....         ......+..
T Consensus         1 ikI~liG~~n~GKSSLin~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~~~~~~   80 (160)
T d1xzpa2           1 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEIEK   80 (160)
T ss_dssp             EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeeccccccccceeEEEEeCCeeEEeccccccccCCccHHHHHHHHHHHHHHHh
Confidence            68999999999999999999987754444444443333333333344678899999942210         112234678


Q ss_pred             CcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcH
Q 028300           86 AQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENV  165 (211)
Q Consensus        86 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv  165 (211)
                      +|++++|+|++++...+.... + ..      ....++++++||.|+.+..  ..++... ....+.+++++||++|.|+
T Consensus        81 ad~ii~v~d~~~~~~~~~~~~-~-~~------~~~~~~i~~~~k~d~~~~~--~~~~~~~-~~~~~~~~~~vSA~~g~gi  149 (160)
T d1xzpa2          81 ADIVLFVLDASSPLDEEDRKI-L-ER------IKNKRYLVVINKVDVVEKI--NEEEIKN-KLGTDRHMVKISALKGEGL  149 (160)
T ss_dssp             CSEEEEEEETTSCCCHHHHHH-H-HH------HTTSSEEEEEEECSSCCCC--CHHHHHH-HHTCSTTEEEEEGGGTCCH
T ss_pred             CCEEEEEEeCCCCcchhhhhh-h-hh------cccccceeeeeeccccchh--hhHHHHH-HhCCCCcEEEEECCCCCCH
Confidence            999999999999876554432 2 11      1356899999999986543  2333322 2234568999999999999


Q ss_pred             HHHHHHHHHH
Q 028300          166 EQCFEQLALK  175 (211)
Q Consensus       166 ~~l~~~i~~~  175 (211)
                      ++++++|.++
T Consensus       150 ~~L~~~I~ke  159 (160)
T d1xzpa2         150 EKLEESIYRE  159 (160)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhc
Confidence            9999998763

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.89  E-value=3.8e-23  Score=145.73  Aligned_cols=151  Identities=22%  Similarity=0.227  Sum_probs=100.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChh---------------hhccchh
Q 028300           16 KILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQE---------------RFRTLTS   80 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~---------------~~~~~~~   80 (211)
                      .|+++|.+|||||||+|+|++.... ....++++.....+...    .+.+||+||..               .+.....
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~~~~-~~~~~g~T~~~~~~~~~----~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~   76 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGKKVR-RGKRPGVTRKIIEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIE   76 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSCCCS-SSSSTTCTTSCEEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCce-eeCCCCEeecccccccc----cceecccCCceeccccccccccccchhhhhhhh
Confidence            6899999999999999999987652 34555555554444433    35789999941               1112233


Q ss_pred             hhccCCcEEEEEEECCChhhHHHHHH---------HHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcC
Q 028300           81 SYYRGAQGIILVYDVTRRETFTNLSD---------VWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHG  151 (211)
Q Consensus        81 ~~~~~~d~~i~v~d~~~~~s~~~~~~---------~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~  151 (211)
                      ..++.+|++++|+|............         .+...+    ...++|+++|+||+|+....+....   .+....+
T Consensus        77 ~~~~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l----~~~~~p~iiv~NK~D~~~~~~~~~~---~~~~~~~  149 (184)
T d2cxxa1          77 DNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFL----RELDIPTIVAVNKLDKIKNVQEVIN---FLAEKFE  149 (184)
T ss_dssp             HHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHH----HHTTCCEEEEEECGGGCSCHHHHHH---HHHHHHT
T ss_pred             hcccccchheeeeeccccchhhhhhhhccccHHHHHHHHHH----HHcCCCEEEEEeeeehhhhHHHHHH---HHHHHhc
Confidence            45678999999999986533222211         122222    2348899999999997543322111   1122211


Q ss_pred             -------CeEEEeeccCCCcHHHHHHHHHHHHHh
Q 028300          152 -------SLFLECSAKTRENVEQCFEQLALKIME  178 (211)
Q Consensus       152 -------~~~~~~Sa~~~~gv~~l~~~i~~~~~~  178 (211)
                             ..++++||++|.|+++++++|.+.+.+
T Consensus       150 ~~~~~~~~~~~~vSA~~g~gi~~L~~~i~~~l~e  183 (184)
T d2cxxa1         150 VPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRE  183 (184)
T ss_dssp             CCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             ccccccCCeEEEEECCCCCCHHHHHHHHHHHccC
Confidence                   248999999999999999999988765

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.89  E-value=7.5e-23  Score=146.04  Aligned_cols=160  Identities=19%  Similarity=0.203  Sum_probs=110.0

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEEE
Q 028300           13 LSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILV   92 (211)
Q Consensus        13 ~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (211)
                      +.+||+++|.+|||||||+++|..  ...+.||.|....  .+.  .....+.+||++|+..+...+..+++.+++++++
T Consensus         1 r~iKivllG~~~vGKTsll~r~~f--~~~~~pTiG~~~~--~~~--~~~~~~~~~D~~gq~~~~~~~~~~~~~~~~~~~~   74 (200)
T d1zcba2           1 RLVKILLLGAGESGKSTFLKQMRI--IHGQDPTKGIHEY--DFE--IKNVPFKMVDVGGQRSERKRWFECFDSVTSILFL   74 (200)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHH--HHSCCCCSSEEEE--EEE--ETTEEEEEEEECC-------CTTSCTTCCEEEEE
T ss_pred             CeEEEEEECCCCCCHHHHHHHHhc--CCCCCCeeeeEEE--EEe--eeeeeeeeecccceeeecccccccccccceeEEE
Confidence            368999999999999999999942  2567788886554  233  3457789999999999999999999999999999


Q ss_pred             EECCChh----------hHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCc----------------ccCHHHHHHH
Q 028300           93 YDVTRRE----------TFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSER----------------VVSREEGIAL  146 (211)
Q Consensus        93 ~d~~~~~----------s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~----------------~v~~~~~~~~  146 (211)
                      +|.++..          .+......|...+... ...++|+++++||.|+.+..                .-..+.+.++
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~piilv~NK~Dl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~  153 (200)
T d1zcba2          75 VSSSEFDQVLMEDRQTNRLTESLNIFETIVNNR-VFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKF  153 (200)
T ss_dssp             EETTCTTCEETTEEEEEHHHHHHHHHHHHHTCG-GGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHH
T ss_pred             EEcCCcceeeeecccchhhhHHHHHHHHHhhCh-hhcCceEEEEeccchhhhhhccccHHHHhCccccCCcchHHHHHHH
Confidence            9998753          3455555455555443 46789999999999973210                0112223222


Q ss_pred             HHH-----------cCCeEEEeeccCCCcHHHHHHHHHHHHHhc
Q 028300          147 AKE-----------HGSLFLECSAKTRENVEQCFEQLALKIMEV  179 (211)
Q Consensus       147 ~~~-----------~~~~~~~~Sa~~~~gv~~l~~~i~~~~~~~  179 (211)
                      ...           ..+.+++|||+++.+|+++|+.+.+.+.+.
T Consensus       154 ~~~~f~~~~~~~~~~~iy~~~TsA~d~~ni~~vf~~v~d~i~~~  197 (200)
T d1zcba2         154 LVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILHD  197 (200)
T ss_dssp             HHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccCCCCCceEEEEeeeeCcHHHHHHHHHHHHHHHHH
Confidence            221           123467899999999999999988876543

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.87  E-value=1.9e-21  Score=139.53  Aligned_cols=120  Identities=18%  Similarity=0.274  Sum_probs=91.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhc-cchhhhccCCcEEEEEEE
Q 028300           16 KILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFR-TLTSSYYRGAQGIILVYD   94 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~-~~~~~~~~~~d~~i~v~d   94 (211)
                      +|+++|++|||||||+++|.++.+....++.+.+.....+. ....+.+.+||++|+..+. ..+..++..++++++|+|
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~i~v~D   80 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVN-NNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVD   80 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCCBCCCCSCEEEEEECS-STTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCcccCCeeEEEEEEEEe-eeeeeeeeeeeccccccccchhhhhhhhhccccceEEE
Confidence            69999999999999999999998866667776665543322 4456789999999998775 467788899999999999


Q ss_pred             CCChhh-HHHHHHHHHHHhhhh-ccCCCccEEEEeecCCCCCCc
Q 028300           95 VTRRET-FTNLSDVWAKEVDLY-STNQDCVKMLVGNKVDRDSER  136 (211)
Q Consensus        95 ~~~~~s-~~~~~~~~~~~~~~~-~~~~~~p~viv~nK~Dl~~~~  136 (211)
                      +++..+ +.+....+...+... ....++|++||+||+|+....
T Consensus        81 ~~d~~~~~~~~~~~l~~~l~~~~~~~~~~pilvv~NK~Dl~~a~  124 (207)
T d2fh5b1          81 SAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAK  124 (207)
T ss_dssp             TTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCC
T ss_pred             cccccccHHHHHHHHHHHHHhHHHhhcCCcEEEEEECcccCCCC
Confidence            999765 344444344444322 234578999999999997644

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.86  E-value=7.1e-23  Score=144.55  Aligned_cols=160  Identities=19%  Similarity=0.121  Sum_probs=97.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhc----cch---hhhccCCcE
Q 028300           16 KILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFR----TLT---SSYYRGAQG   88 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~----~~~---~~~~~~~d~   88 (211)
                      .|+++|++|||||||+|+|.+...........+.........-.....+.+||+||..+..    ...   ...+..++.
T Consensus         3 ~VaiiG~~nvGKSSLin~L~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~~   82 (185)
T d1lnza2           3 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTRV   82 (185)
T ss_dssp             CEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCCE
T ss_pred             eEEEECCCCCCHHHHHHHHhCCCCceecCCCceEeeeeceeEecCCcEEEEecCCCcccCchHHHHHHHHHHHHHHHhhh
Confidence            6899999999999999999877652211111111111111222223467899999953321    111   223456888


Q ss_pred             EEEEEECCChhhHHHH--HHHHHHHhhhh-ccCCCccEEEEeecCCCCCCcccCHHHHHHHHHH--cCCeEEEeeccCCC
Q 028300           89 IILVYDVTRRETFTNL--SDVWAKEVDLY-STNQDCVKMLVGNKVDRDSERVVSREEGIALAKE--HGSLFLECSAKTRE  163 (211)
Q Consensus        89 ~i~v~d~~~~~s~~~~--~~~~~~~~~~~-~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~--~~~~~~~~Sa~~~~  163 (211)
                      ++++++....+.....  ...+....... ....++|+++|+||+|+.+..    +....+...  .+.+++.+||++|.
T Consensus        83 i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ivv~NK~Dl~~~~----~~~~~~~~~~~~~~~v~~iSA~~g~  158 (185)
T d1lnza2          83 IVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAA----ENLEAFKEKLTDDYPVFPISAVTRE  158 (185)
T ss_dssp             EEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHH----HHHHHHHHHCCSCCCBCCCSSCCSS
T ss_pred             hhheeeecccccchhhhhhhhhhhccchhhhhccCCcchhhccccchHhHH----HHHHHHHHHhccCCcEEEEECCCCC
Confidence            9888886654322211  11011111111 124578999999999986532    122223333  36789999999999


Q ss_pred             cHHHHHHHHHHHHHhc
Q 028300          164 NVEQCFEQLALKIMEV  179 (211)
Q Consensus       164 gv~~l~~~i~~~~~~~  179 (211)
                      |+++++++|.+.+.+.
T Consensus       159 Gi~~L~~~i~~~L~~~  174 (185)
T d1lnza2         159 GLRELLFEVANQLENT  174 (185)
T ss_dssp             TTHHHHHHHHHHHTSC
T ss_pred             CHHHHHHHHHHhhhhC
Confidence            9999999999887654

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.86  E-value=1.4e-21  Score=138.95  Aligned_cols=156  Identities=14%  Similarity=0.171  Sum_probs=94.8

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhh----------h---c
Q 028300           11 YDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER----------F---R   76 (211)
Q Consensus        11 ~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~----------~---~   76 (211)
                      .+.-.+|+|+|.+|||||||+|+|++... .......+.+..........   .+.+.|+++...          .   .
T Consensus        20 ~~~~~~I~lvG~~n~GKSTLin~L~g~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~d~~~~~~~~~~~~~~~~~~~~~   96 (195)
T d1svia_          20 EGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRMI   96 (195)
T ss_dssp             CSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHhcCCCceEEeecccceeeecccccccc---cceEEEEEeeccccccccccchhhhHH
Confidence            33345899999999999999999998654 34444444444444444333   234556665211          1   1


Q ss_pred             cchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHH----cCC
Q 028300           77 TLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKE----HGS  152 (211)
Q Consensus        77 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~----~~~  152 (211)
                      ......+..+|++++++|++++..-...  .+...+..    .++|+++|+||+|+.+...+.. ....+...    ...
T Consensus        97 ~~~~~~~~~~~~vi~viD~~~~~~~~~~--~~~~~l~~----~~~piivv~NK~D~~~~~~~~~-~~~~~~~~l~~~~~~  169 (195)
T d1svia_          97 ETYITTREELKAVVQIVDLRHAPSNDDV--QMYEFLKY----YGIPVIVIATKADKIPKGKWDK-HAKVVRQTLNIDPED  169 (195)
T ss_dssp             HHHHHHCTTEEEEEEEEETTSCCCHHHH--HHHHHHHH----TTCCEEEEEECGGGSCGGGHHH-HHHHHHHHHTCCTTS
T ss_pred             hhhhccccchhhhhhhhhcccccccccc--cccccccc----ccCcceechhhccccCHHHHHH-HHHHHHHHhcccCCC
Confidence            1233455677999999999865332221  24455543    3789999999999865443322 12222222    345


Q ss_pred             eEEEeeccCCCcHHHHHHHHHHHH
Q 028300          153 LFLECSAKTRENVEQCFEQLALKI  176 (211)
Q Consensus       153 ~~~~~Sa~~~~gv~~l~~~i~~~~  176 (211)
                      +++.+||++|.|+++++++|.+.+
T Consensus       170 ~~~~~SA~~~~gi~el~~~i~~~l  193 (195)
T d1svia_         170 ELILFSSETKKGKDEAWGAIKKMI  193 (195)
T ss_dssp             EEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             CEEEEeCCCCCCHHHHHHHHHHHh
Confidence            799999999999999999998876

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=99.86  E-value=1e-21  Score=139.62  Aligned_cols=162  Identities=14%  Similarity=0.118  Sum_probs=104.5

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCC--Cccc----eeeEEEEEE-------------------ECCEEEEEE
Q 028300           11 YDLSFKILLIGDSGVGKSSLLVSFISSSVDDLS--PTIG----VDFKIKLLT-------------------VAGKRLKLT   65 (211)
Q Consensus        11 ~~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~--~~~~----~~~~~~~~~-------------------~~~~~~~~~   65 (211)
                      ....++|+++|+.++|||||+++|++.......  ...+    ..+......                   .......+.
T Consensus         2 ~~~~inIaiiGhvd~GKSTL~~~L~g~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (195)
T d1kk1a3           2 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVS   81 (195)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEE
T ss_pred             CCCcEEEEEEeccCCcHHHHHHHHHhhhhhhhHHHHHcCcccccchhhhhhhccchhhhccceeeeeeeeeeecCceeEe
Confidence            356789999999999999999999864421111  0111    111111110                   111346789


Q ss_pred             EEeCCChhhhccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccC--HHHH
Q 028300           66 IWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVS--REEG  143 (211)
Q Consensus        66 l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~--~~~~  143 (211)
                      ++|+||+..|.......+..+|++++++|+.+......... ....+...   ...+++++.||+|+.+.....  ....
T Consensus        82 ~iDtPGh~~f~~~~~~~~~~~d~~ilvvda~~g~~~~~t~e-~~~~~~~~---~~~~iiv~inK~D~~d~~~~~~~~~~~  157 (195)
T d1kk1a3          82 FIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTRE-HLMALQII---GQKNIIIAQNKIELVDKEKALENYRQI  157 (195)
T ss_dssp             EEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHH-HHHHHHHH---TCCCEEEEEECGGGSCHHHHHHHHHHH
T ss_pred             eeccchhhhhhHHhhcccccccccccccchhhhhhhhhhHH-HHHHHHHh---cCccceeeeecccchhhHHHHHHHHHH
Confidence            99999999998888888899999999999988532222222 22222222   234678899999986543221  1222


Q ss_pred             HHHHHHc---CCeEEEeeccCCCcHHHHHHHHHHHH
Q 028300          144 IALAKEH---GSLFLECSAKTRENVEQCFEQLALKI  176 (211)
Q Consensus       144 ~~~~~~~---~~~~~~~Sa~~~~gv~~l~~~i~~~~  176 (211)
                      .++....   .++++++||++|+|++++++.|.+.+
T Consensus       158 ~~~~~~~~~~~~~iIpiSA~~G~ni~~Ll~~I~~~i  193 (195)
T d1kk1a3         158 KEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFI  193 (195)
T ss_dssp             HHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred             HHHhccccCCCCeEEEEECCCCCCHHHHHHHHHHHC
Confidence            3333322   36899999999999999999987754

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.86  E-value=1.2e-21  Score=142.38  Aligned_cols=158  Identities=20%  Similarity=0.130  Sum_probs=101.1

Q ss_pred             EEEEcCCCCcHHHHHHHHhhCCCCCCC---CccceeeEEEE--------------EEECCEEEEEEEEeCCChhhhccch
Q 028300           17 ILLIGDSGVGKSSLLVSFISSSVDDLS---PTIGVDFKIKL--------------LTVAGKRLKLTIWDTAGQERFRTLT   79 (211)
Q Consensus        17 I~v~G~~~~GKssli~~l~~~~~~~~~---~~~~~~~~~~~--------------~~~~~~~~~~~l~D~~g~~~~~~~~   79 (211)
                      |+|+|++++|||||+++|++.......   .+.........              ..+......+.|+||||+..|....
T Consensus         8 IaIiGh~d~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDtPGh~~f~~~~   87 (227)
T d1g7sa4           8 VSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFTTLR   87 (227)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCTTSB
T ss_pred             EEEEeCCCccHHHHHHHHHhhcchheecCceeeeccccccccccccccccccccceeecccccccccccccceecccccc
Confidence            999999999999999999865321100   01100011000              0112234578999999999988777


Q ss_pred             hhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccC-----------------H--
Q 028300           80 SSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVS-----------------R--  140 (211)
Q Consensus        80 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~-----------------~--  140 (211)
                      ...+..+|++|+|+|+.+.-......  ....+.    ..++|+++++||+|+.......                 .  
T Consensus        88 ~~~~~~~D~~ilVvda~~g~~~~~~~--~~~~~~----~~~~p~iivlNK~D~~~~~~~~~~~~~~~~~~~~~~~v~~~~  161 (227)
T d1g7sa4          88 KRGGALADLAILIVDINEGFKPQTQE--ALNILR----MYRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKL  161 (227)
T ss_dssp             CSSSBSCSEEEEEEETTTCCCHHHHH--HHHHHH----HTTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHHHHHH
T ss_pred             hhcccccceEEEEEecccCcccchhH--HHHHhh----cCCCeEEEEEECccCCCchhhhhhHHHHHhhhcchHHHHHHH
Confidence            78889999999999998743222221  333333    2488999999999985433211                 0  


Q ss_pred             -HHHH----HHHHH--------------cCCeEEEeeccCCCcHHHHHHHHHHHHHhcc
Q 028300          141 -EEGI----ALAKE--------------HGSLFLECSAKTRENVEQCFEQLALKIMEVP  180 (211)
Q Consensus       141 -~~~~----~~~~~--------------~~~~~~~~Sa~~~~gv~~l~~~i~~~~~~~~  180 (211)
                       ....    .+...              ..++++++||.+|.|++++++.|.....+..
T Consensus       162 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~pvSa~~G~gid~Ll~~l~~l~~~~~  220 (227)
T d1g7sa4         162 DTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQYL  220 (227)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHhhhhhhhhcccccccCCCeEEEeeCCCCCCHHHHHHHHHHHHHHHH
Confidence             0000    00000              0136899999999999999999888765543

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.85  E-value=7e-22  Score=143.11  Aligned_cols=161  Identities=18%  Similarity=0.189  Sum_probs=116.6

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEE
Q 028300           11 YDLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGII   90 (211)
Q Consensus        11 ~~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (211)
                      +...+||+++|+.|||||||++++..+.+   .||.|....  .+.+  ..+.+.+||++|+..++..|..+++.+++++
T Consensus         3 ~k~~~KilllG~~~vGKTsll~~~~~~~~---~pTiG~~~~--~~~~--~~~~~~~~D~~Gq~~~r~~w~~~~~~~~~ii   75 (221)
T d1azta2           3 YRATHRLLLLGAGESGKSTIVKQMRILHV---VLTSGIFET--KFQV--DKVNFHMFDVGGQRDERRKWIQCFNDVTAII   75 (221)
T ss_dssp             HHHSEEEEEECSTTSSHHHHHHHHHHHHC---CCCCSCEEE--EEEE--TTEEEEEEECCCSTTTTTGGGGGCTTCSEEE
T ss_pred             chhcCEEEEECCCCCCHHHHHHHHhcCCc---CCCCCeEEE--EEEE--CcEEEEEEecCccceeccchhhhcccccceE
Confidence            35678999999999999999999976644   467775544  3334  3478999999999999999999999999999


Q ss_pred             EEEECCChh----------hHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcc----c------------------
Q 028300           91 LVYDVTRRE----------TFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERV----V------------------  138 (211)
Q Consensus        91 ~v~d~~~~~----------s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~----v------------------  138 (211)
                      +++|.++.+          .+.+....|...+... ...++|++|++||+|+.+++.    .                  
T Consensus        76 ~v~d~s~~~~~~~~~~~~~r~~e~~~~~~~il~~~-~~~~~~iil~~NK~Dl~~~k~~~~~~~~~~~f~~~~~~~~~~~~  154 (221)
T d1azta2          76 FVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNR-WLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDA  154 (221)
T ss_dssp             EEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCG-GGSSCEEEEEEECHHHHHHHHHHCSSCHHHHCGGGGGCCCCTTC
T ss_pred             EEEEccccccccccccchHHHHHHHHHHHHHhcCh-hhCCCcEEEEechhhhhhhhhccCcccHHHhCccccccCCcccc
Confidence            999988642          3455555466666544 456899999999999833211    0                  


Q ss_pred             --------CHHHHHHHH-----HHc--------CCeEEEeeccCCCcHHHHHHHHHHHHHhc
Q 028300          139 --------SREEGIALA-----KEH--------GSLFLECSAKTRENVEQCFEQLALKIMEV  179 (211)
Q Consensus       139 --------~~~~~~~~~-----~~~--------~~~~~~~Sa~~~~gv~~l~~~i~~~~~~~  179 (211)
                              ....+..+.     ...        .+-.+++||.+..+|+.+|+.+.+.+...
T Consensus       155 ~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~y~h~T~A~Dt~ni~~vf~~v~d~I~~~  216 (221)
T d1azta2         155 TPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQRM  216 (221)
T ss_dssp             CCCTTCCHHHHHHHHHHHHHHHHHHTSSCTTSCCEEEEECCTTCHHHHHHHHHTTHHHHHHH
T ss_pred             cccCCCchhHHHHHHHHHHHHHHHhccCCCCCCceeeeecceeccHHHHHHHHHHHHHHHHH
Confidence                    012222221     111        12356899999999999998887766643

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.84  E-value=4.2e-20  Score=132.15  Aligned_cols=161  Identities=17%  Similarity=0.107  Sum_probs=100.9

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCC--------ccceeeEEEEEEE----------------------CCEE
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFISSSVDDLSP--------TIGVDFKIKLLTV----------------------AGKR   61 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~--------~~~~~~~~~~~~~----------------------~~~~   61 (211)
                      ...++|+++|+.++|||||+++|++........        ..+..........                      ....
T Consensus         6 ~p~ini~iiGhVd~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (205)
T d2qn6a3           6 QPEVNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFL   85 (205)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHSCCC--------------CEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEE
T ss_pred             CCCeEEEEEEccCCcHHHHHHHHHhhhchhhHHHHHhhcccccchhhhhhhhhhhhhhhheeeecccceeeeeeccccce
Confidence            445899999999999999999998532210000        0010000000000                      1123


Q ss_pred             EEEEEEeCCChhhhccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCH-
Q 028300           62 LKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSR-  140 (211)
Q Consensus        62 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~-  140 (211)
                      ..+.++|+||+.+|.......+..+|++|+|+|+.+.-.-...+. ....+..   ..-.|++|++||+|+.+...... 
T Consensus        86 r~~~iiD~PGH~df~~~~~~~~~~ad~ailvVda~~gi~~~~t~e-~~~~~~~---~~i~~iIV~vNK~Dl~~~~~~~~~  161 (205)
T d2qn6a3          86 RRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTRE-HFVALGI---IGVKNLIIVQNKVDVVSKEEALSQ  161 (205)
T ss_dssp             EEEEEEECSCHHHHHHHHHHTSSCCSEEEEEEETTSCSSCHHHHH-HHHHHHH---TTCCCEEEEEECGGGSCHHHHHHH
T ss_pred             EEEEEeccchHHHHHhhhhcceeccccccccccccccccchhHHH-HHHHHHH---cCCceeeeccccCCCccchHHHHH
Confidence            578999999999998777888899999999999987521111122 1122221   22358899999999965432211 


Q ss_pred             -HHHHHHHHH---cCCeEEEeeccCCCcHHHHHHHHHHHH
Q 028300          141 -EEGIALAKE---HGSLFLECSAKTRENVEQCFEQLALKI  176 (211)
Q Consensus       141 -~~~~~~~~~---~~~~~~~~Sa~~~~gv~~l~~~i~~~~  176 (211)
                       .....+...   .+++++++||++|.|++++++.|.+.+
T Consensus       162 ~~~~~~~l~~~~~~~~p~ipiSA~~g~nI~~L~e~i~~~i  201 (205)
T d2qn6a3         162 YRQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYI  201 (205)
T ss_dssp             HHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred             HHHHHHHhccccCCCCeEEEEeCCCCCChHHHHHHHHhhC
Confidence             112222222   246899999999999999999887754

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.84  E-value=9.4e-21  Score=132.72  Aligned_cols=162  Identities=20%  Similarity=0.128  Sum_probs=100.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhh---------hccchhhhccC
Q 028300           15 FKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER---------FRTLTSSYYRG   85 (211)
Q Consensus        15 ~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~---------~~~~~~~~~~~   85 (211)
                      -.|+|+|.+|||||||+|+|++...........+...............+.+||++|...         ...........
T Consensus         6 ~~I~iiG~~nvGKSSLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (179)
T d1egaa1           6 GFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSIGD   85 (179)
T ss_dssp             EEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCCCC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCceeeccCCCceEEEEEeeeecCCceeEeecCCCceecchhhhhhhhhhccccchhh
Confidence            458999999999999999999877532222222221111111111233456788887321         12223334566


Q ss_pred             CcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcC-CeEEEeeccCCCc
Q 028300           86 AQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHG-SLFLECSAKTREN  164 (211)
Q Consensus        86 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~g  164 (211)
                      +|+++++.|..+.......   +...+.    ....|.++|+||.|..................++ .+++++||++|.|
T Consensus        86 ~~~~l~~~d~~~~~~~~~~---~~~~l~----~~~~~~i~v~~k~d~~~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g~g  158 (179)
T d1egaa1          86 VELVIFVVEGTRWTPDDEM---VLNKLR----EGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLN  158 (179)
T ss_dssp             EEEEEEEEETTCCCHHHHH---HHHHHH----SSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTT
T ss_pred             cceeEEEEecCccchhHHH---HHHHhh----hccCceeeeeeeeeccchhhhhhhHhhhhhhhcCCCCEEEEeCcCCCC
Confidence            7888899998764332221   222222    3467889999999986554332333344444444 5799999999999


Q ss_pred             HHHHHHHHHHHHHhccchh
Q 028300          165 VEQCFEQLALKIMEVPSLL  183 (211)
Q Consensus       165 v~~l~~~i~~~~~~~~~~~  183 (211)
                      +++++++|.+.+.+....+
T Consensus       159 i~~L~~~i~~~lpe~~~~y  177 (179)
T d1egaa1         159 VDTIAAIVRKHLPEATHHF  177 (179)
T ss_dssp             HHHHHHHHHTTCCBCCCSS
T ss_pred             HHHHHHHHHHhCCCCCCCC
Confidence            9999999988876665544

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=99.84  E-value=1e-20  Score=133.88  Aligned_cols=158  Identities=13%  Similarity=0.050  Sum_probs=107.0

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhhCC---------------CCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhcc
Q 028300           13 LSFKILLIGDSGVGKSSLLVSFISSS---------------VDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRT   77 (211)
Q Consensus        13 ~~~~I~v~G~~~~GKssli~~l~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~   77 (211)
                      ..++|+++|++++|||||+++|+...               ........|.+.......+......+.++|+||+.+|..
T Consensus         2 p~ini~iiGHvd~GKSTL~~~l~~~~~~~~~~~~~~~~~~~~~~~Er~rgiTi~~~~~~~~~~~~~~~~iDtPGh~~f~~   81 (196)
T d1d2ea3           2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK   81 (196)
T ss_dssp             CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred             CCcEEEEEeCCCCcHHHHHHHHHHHHHHcCcchhhhhhhcccchhhcCCCccCCcceEEEEeceeeEEeecCcchHHHHH
Confidence            35899999999999999999997421               011112345555555556666667899999999999988


Q ss_pred             chhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccC---HHHHHHHHHHc----
Q 028300           78 LTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVS---REEGIALAKEH----  150 (211)
Q Consensus        78 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~---~~~~~~~~~~~----  150 (211)
                      .....+..+|++++|+|+.+.-.-+ .+. ....+.   .....|++++.||+|+....+..   ..+.+.+....    
T Consensus        82 ~~~~~~~~aD~allVVda~~G~~~Q-T~~-~~~~a~---~~~~~~iIv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~  156 (196)
T d1d2ea3          82 NMITGTAPLDGCILVVAANDGPMPQ-TRE-HLLLAR---QIGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKG  156 (196)
T ss_dssp             HHHHTSSCCSEEEEEEETTTCSCHH-HHH-HHHHHH---HTTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCT
T ss_pred             HHHHHHhhcCeEEEEEEcCCCCchh-HHH-HHHHHH---HhcCCcEEEEEecccccccHHHHHHHHHHHHHHHHHhCCCc
Confidence            7888889999999999999753221 121 222222   22356788999999986533211   11233344333    


Q ss_pred             -CCeEEEeeccCC----------CcHHHHHHHHHHH
Q 028300          151 -GSLFLECSAKTR----------ENVEQCFEQLALK  175 (211)
Q Consensus       151 -~~~~~~~Sa~~~----------~gv~~l~~~i~~~  175 (211)
                       .+|++.+|+++|          .++.++++.|.+.
T Consensus       157 ~~~pii~iSa~~g~~~~~~~~~~~~~~~Lldai~~~  192 (196)
T d1d2ea3         157 EETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTY  192 (196)
T ss_dssp             TTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHH
T ss_pred             ccCEEEEEEccccccccCcccccCCHHHHHHHHHhh
Confidence             367999999998          4788888776553

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.79  E-value=9.2e-20  Score=129.94  Aligned_cols=143  Identities=15%  Similarity=0.092  Sum_probs=93.3

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhhCC--------CC-----C---CCCccceeeEEEEEEECCEEEEEEEEeCCChhhhc
Q 028300           13 LSFKILLIGDSGVGKSSLLVSFISSS--------VD-----D---LSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFR   76 (211)
Q Consensus        13 ~~~~I~v~G~~~~GKssli~~l~~~~--------~~-----~---~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~   76 (211)
                      ..++|+++|++++|||||+++|+...        ..     .   .....|.+.......+...+..+.|+|+||+.+|.
T Consensus         2 ~~ini~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiTi~~~~~~~~~~~~~i~iiDtPGh~df~   81 (204)
T d2c78a3           2 PHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYI   81 (204)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGGH
T ss_pred             CCeEEEEEeCCCCcHHHHHHHHHHHhhhccCCcchhhhhhcccchHHhcCCeEEEeeEEEEEeCCeEEEEEeCCCchhhH
Confidence            35899999999999999999997321        00     0   00112445444444555566788999999999998


Q ss_pred             cchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCcc-EEEEeecCCCCCCcccC---HHHHHHHHHHcC-
Q 028300           77 TLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCV-KMLVGNKVDRDSERVVS---REEGIALAKEHG-  151 (211)
Q Consensus        77 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p-~viv~nK~Dl~~~~~v~---~~~~~~~~~~~~-  151 (211)
                      ......+..+|++|+|+|+.+.-..+...  ....+.    ..++| +++++||+|+.+..+..   ..+...+....+ 
T Consensus        82 ~~~~~~~~~aD~avlVvda~~Gv~~qt~~--~~~~~~----~~gi~~iiv~iNK~D~~~~~~~~~~~~~~i~~~l~~~~~  155 (204)
T d2c78a3          82 KNMITGAAQMDGAILVVSAADGPMPQTRE--HILLAR----QVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEF  155 (204)
T ss_dssp             HHHHHHHTTCSSEEEEEETTTCCCHHHHH--HHHHHH----HTTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHCCEEEEEEECCCCCcHHHHH--HHHHHH----HcCCCeEEEEEEecccCCCHHHHHHHHHHHHHHHHhcCC
Confidence            88888899999999999998764433322  222222    23665 67789999986533211   122333333333 


Q ss_pred             ----CeEEEeeccC
Q 028300          152 ----SLFLECSAKT  161 (211)
Q Consensus       152 ----~~~~~~Sa~~  161 (211)
                          ++++..|+..
T Consensus       156 ~~~~i~~i~~sa~~  169 (204)
T d2c78a3         156 PGDEVPVIRGSALL  169 (204)
T ss_dssp             CTTTSCEEECCHHH
T ss_pred             Ccccceeeeeechh
Confidence                4588888764

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=99.76  E-value=5.4e-18  Score=121.94  Aligned_cols=151  Identities=17%  Similarity=0.147  Sum_probs=96.4

Q ss_pred             CCceeeEEEEEcCCCCcHHHHHHHHhhCCC--CC------------------------------CCCccceeeEEEEEEE
Q 028300           10 SYDLSFKILLIGDSGVGKSSLLVSFISSSV--DD------------------------------LSPTIGVDFKIKLLTV   57 (211)
Q Consensus        10 ~~~~~~~I~v~G~~~~GKssli~~l~~~~~--~~------------------------------~~~~~~~~~~~~~~~~   57 (211)
                      .....+||+++|+.++|||||+.+|+...-  ..                              .....+.+.......+
T Consensus         5 ~~~~~~~i~viGHVd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~   84 (222)
T d1zunb3           5 ERKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYF   84 (222)
T ss_dssp             TSCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEE
T ss_pred             ccCCcceEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHhcCccccceeeeeccccchhhhccCCCceeeEEEE
Confidence            345788999999999999999999963211  00                              0011122222222233


Q ss_pred             CCEEEEEEEEeCCChhhhccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCc-cEEEEeecCCCCCCc
Q 028300           58 AGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDC-VKMLVGNKVDRDSER  136 (211)
Q Consensus        58 ~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~-p~viv~nK~Dl~~~~  136 (211)
                      ......+.++|+||+..|.......+..+|++++|+|+.+.-.-....  ....+.    ..++ .++++.||+|+.+..
T Consensus        85 ~~~~~~~~iiD~PGH~dfv~~~~~g~~~aD~ailVvda~~G~~~Qt~e--~~~~~~----~~gv~~iiv~vNK~D~~~~~  158 (222)
T d1zunb3          85 STAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRR--HSYIAS----LLGIKHIVVAINKMDLNGFD  158 (222)
T ss_dssp             ECSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHH--HHHHHH----HTTCCEEEEEEECTTTTTSC
T ss_pred             eccceEEEEEeccchhhhhhhhccccccCceEEEEeccccCcccchHH--HHHHHH----HcCCCEEEEEEEcccccccc
Confidence            334467899999999999888888899999999999998743222111  112222    2354 478999999997644


Q ss_pred             ccCHH----HHHHHHHHcC-----CeEEEeeccCCCcHH
Q 028300          137 VVSRE----EGIALAKEHG-----SLFLECSAKTRENVE  166 (211)
Q Consensus       137 ~v~~~----~~~~~~~~~~-----~~~~~~Sa~~~~gv~  166 (211)
                      +....    +...+....+     ++++++||++|.|+.
T Consensus       159 ~~~~~~~~~~l~~~~~~~~~~~~~i~~IPiSA~~G~ni~  197 (222)
T d1zunb3         159 ERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVV  197 (222)
T ss_dssp             HHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTS
T ss_pred             ceehhhhHHHHhhhhHhhccCCCceEEEEEEcccCccCC
Confidence            32222    2333444443     368999999999883

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=99.74  E-value=4.6e-18  Score=119.41  Aligned_cols=166  Identities=13%  Similarity=0.055  Sum_probs=89.0

Q ss_pred             CCCCCCCCceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccce-eeEEEEEEECCEEEEEEEEeCCChhhh-------
Q 028300            4 SSGQSNSYDLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGV-DFKIKLLTVAGKRLKLTIWDTAGQERF-------   75 (211)
Q Consensus         4 ~~~~~~~~~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~-------   75 (211)
                      +...+.+.+..++|+++|.+|||||||+|+|.+..........+. ...............+..++.++....       
T Consensus         6 ~~~~~~p~~~~~~I~lvG~~NvGKSSL~n~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (188)
T d1puia_           6 PDIRHLPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAEVPEEMKRKW   85 (188)
T ss_dssp             SSGGGSSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEECCCCC------CCHHHH
T ss_pred             CChhHCCCccCCEEEEECCCCCCHHHHHHHHhCCCceEeecccccceeeccceecccccceeeeecccccchhhhhhhhh
Confidence            344667788899999999999999999999998776333322222 222222222222222222222221111       


Q ss_pred             cc---chhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCH--HHHHHHHHHc
Q 028300           76 RT---LTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSR--EEGIALAKEH  150 (211)
Q Consensus        76 ~~---~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~--~~~~~~~~~~  150 (211)
                      ..   .........+.++.+.+...........  +.....    ....++++++||+|+.+......  +...+.....
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~----~~~~~~~~v~~k~D~~~~~~~~~~~~~~~~~l~~~  159 (188)
T d1puia_          86 QRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQ--MIEWAV----DSNIAVLVLLTKADKLASGARKAQLNMVREAVLAF  159 (188)
T ss_dssp             HHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHH--HHHHHH----HTTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGG
T ss_pred             hhhhhhhhhhhhheeEEEEeecccccchhHHHH--HHHHhh----hccccccchhhhhhccCHHHHHHHHHHHHHHHHhh
Confidence            11   1122233445666666666543333222  333333    24778999999999865433221  1122222222


Q ss_pred             --CCeEEEeeccCCCcHHHHHHHHHHH
Q 028300          151 --GSLFLECSAKTRENVEQCFEQLALK  175 (211)
Q Consensus       151 --~~~~~~~Sa~~~~gv~~l~~~i~~~  175 (211)
                        ..+++.+||++|.|++++++.|.+.
T Consensus       160 ~~~~~~i~vSA~~g~Gid~L~~~i~~~  186 (188)
T d1puia_         160 NGDVQVETFSSLKKQGVDKLRQKLDTW  186 (188)
T ss_dssp             CSCEEEEECBTTTTBSHHHHHHHHHHH
T ss_pred             CCCCcEEEEeCCCCCCHHHHHHHHHHH
Confidence              2468999999999999999987654

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.73  E-value=2.9e-17  Score=121.07  Aligned_cols=114  Identities=17%  Similarity=0.244  Sum_probs=79.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhhCCC--C---------------CCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhcc
Q 028300           15 FKILLIGDSGVGKSSLLVSFISSSV--D---------------DLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRT   77 (211)
Q Consensus        15 ~~I~v~G~~~~GKssli~~l~~~~~--~---------------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~   77 (211)
                      -+|+++|+.++|||||+.+++...-  .               ......+.+.......+...+.+++|+||||+.+|..
T Consensus         7 Rni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~~~~~~~~n~iDtPG~~dF~~   86 (276)
T d2bv3a2           7 RNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDAPGHVDFTI   86 (276)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHTSSCC-------------------CCCCCCCSEEEEEETTEEEEEECCCSSSSCST
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHhcCccccccceecCceEEeccHHHHhcCCccccceeeeccCCeEEEEecCCchhhhHH
Confidence            3799999999999999999973211  0               0011112222222233334556799999999999998


Q ss_pred             chhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCC
Q 028300           78 LTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDS  134 (211)
Q Consensus        78 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~  134 (211)
                      .....++.+|+.|+|+|+.+.-....... |...     ...++|.++++||+|...
T Consensus        87 e~~~~l~~~D~avlVvda~~Gv~~~T~~~-w~~a-----~~~~lP~i~fINKmDr~~  137 (276)
T d2bv3a2          87 EVERSMRVLDGAIVVFDSSQGVEPQSETV-WRQA-----EKYKVPRIAFANKMDKTG  137 (276)
T ss_dssp             THHHHHHHCCEEEEEEETTTSSCHHHHHH-HHHH-----HTTTCCEEEEEECTTSTT
T ss_pred             HHHHHHHhhhheEEeccccCCcchhHHHH-HHHH-----HHcCCCEEEEEecccccc
Confidence            89999999999999999998543333332 4332     245999999999999743

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.72  E-value=5e-18  Score=121.44  Aligned_cols=118  Identities=20%  Similarity=0.209  Sum_probs=80.1

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhh----hccCCcE
Q 028300           13 LSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSS----YYRGAQG   88 (211)
Q Consensus        13 ~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~----~~~~~d~   88 (211)
                      .+.+|+++|++|||||||+|+|.++.+.......     .....+......+.+||+||+..+...+..    ....++.
T Consensus         2 ~~p~V~lvG~~n~GKTSLln~l~~~~~~~~tt~~-----~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~~~~   76 (209)
T d1nrjb_           2 YQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQ-----EPLSAADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKG   76 (209)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCS-----SCEEETTGGGSSCEEEECCCCGGGTHHHHHHHHHHGGGEEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCeEEec-----ceEEEEEeCCeEEEEEecccccchhhHHHHHHHHHhhhccc
Confidence            4569999999999999999999998764322211     122234455567899999998766544433    4456688


Q ss_pred             EEEEEECCC-hhhHHHHHHHH---HHHhhhhccCCCccEEEEeecCCCCCCc
Q 028300           89 IILVYDVTR-RETFTNLSDVW---AKEVDLYSTNQDCVKMLVGNKVDRDSER  136 (211)
Q Consensus        89 ~i~v~d~~~-~~s~~~~~~~~---~~~~~~~~~~~~~p~viv~nK~Dl~~~~  136 (211)
                      +++++|+.+ ..+++.....+   ...+.. ....++|+++|+||+|+....
T Consensus        77 ~i~~vd~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~piiiv~NK~D~~~~~  127 (209)
T d1nrjb_          77 LIFMVDSTVDPKKLTTTAEFLVDILSITES-SCENGIDILIACNKSELFTAR  127 (209)
T ss_dssp             EEEEEETTSCTTCCHHHHHHHHHHHHHHHH-HSTTCCCEEEEEECTTSTTCC
T ss_pred             cceEEEEecccccHHHHHHHHHHHHHHHHH-HHhccCCeEEEEEeecccccC
Confidence            999999664 55555555422   222222 245789999999999986543

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=99.69  E-value=2.7e-16  Score=115.60  Aligned_cols=112  Identities=13%  Similarity=0.236  Sum_probs=77.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCCC--CCC------C---------CccceeeEEEEEEECCEEEEEEEEeCCChhhhccc
Q 028300           16 KILLIGDSGVGKSSLLVSFISSSV--DDL------S---------PTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTL   78 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~~~--~~~------~---------~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~   78 (211)
                      +|+++|+.++|||||+.+|+...-  ...      .         ...+.+.......+...+.++.++||||+.+|...
T Consensus         4 Nv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~~g~~~~D~~~~E~~r~~ti~~~~~~~~~~~~~~n~iDtPGh~dF~~e   83 (267)
T d2dy1a2           4 TVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDFVGE   83 (267)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGGHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCchhhccchhccccccchHHHHHhCCeEEeecccccccccceeEEccCchhhhhhh
Confidence            699999999999999999963221  100      0         01122222222233334567899999999999888


Q ss_pred             hhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCC
Q 028300           79 TSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRD  133 (211)
Q Consensus        79 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~  133 (211)
                      ....++.+|++|+|+|+.+.-....... |.. ..    ..++|.++++||+|..
T Consensus        84 ~~~al~~~D~avlvvda~~Gv~~~t~~~-~~~-~~----~~~~p~~i~iNk~D~~  132 (267)
T d2dy1a2          84 IRGALEAADAALVAVSAEAGVQVGTERA-WTV-AE----RLGLPRMVVVTKLDKG  132 (267)
T ss_dssp             HHHHHHHCSEEEEEEETTTCSCHHHHHH-HHH-HH----HTTCCEEEEEECGGGC
T ss_pred             hhhhhcccCceEEEeeccCCccchhHHH-HHh-hh----hccccccccccccccc
Confidence            8889999999999999997544443333 432 22    3489999999999963

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.68  E-value=7.1e-18  Score=122.63  Aligned_cols=150  Identities=19%  Similarity=0.166  Sum_probs=96.7

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhhCC--CC----------------CC------------CCccceeeEEEEEEECCEEE
Q 028300           13 LSFKILLIGDSGVGKSSLLVSFISSS--VD----------------DL------------SPTIGVDFKIKLLTVAGKRL   62 (211)
Q Consensus        13 ~~~~I~v~G~~~~GKssli~~l~~~~--~~----------------~~------------~~~~~~~~~~~~~~~~~~~~   62 (211)
                      ..++|+++|+.++|||||+.+|+...  ..                ..            ....|.+.......+.....
T Consensus         5 ~~iNi~iiGHvD~GKsTl~~~ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~   84 (239)
T d1f60a3           5 SHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKY   84 (239)
T ss_dssp             EEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSSE
T ss_pred             CccEEEEEeCCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCccceeeecccchhhhcceeccccceeEeccCCE
Confidence            45899999999999999999996311  00                00            01123333333334444557


Q ss_pred             EEEEEeCCChhhhccchhhhccCCcEEEEEEECCChhhH------HHHHHHHHHHhhhhccCCCcc-EEEEeecCCCCCC
Q 028300           63 KLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETF------TNLSDVWAKEVDLYSTNQDCV-KMLVGNKVDRDSE  135 (211)
Q Consensus        63 ~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~------~~~~~~~~~~~~~~~~~~~~p-~viv~nK~Dl~~~  135 (211)
                      ++.|+|+|||.+|.......+..+|++|+|+|+.+..--      ..... ......    ..++| +++++||+|+.+.
T Consensus        85 ~i~iiDtPGH~df~~~~~~g~~~~D~ailvvda~~G~~e~g~~~~~QT~e-h~~~~~----~~gv~~iiv~iNKmD~~~~  159 (239)
T d1f60a3          85 QVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTRE-HALLAF----TLGVRQLIVAVNKMDSVKW  159 (239)
T ss_dssp             EEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHH-HHHHHH----HTTCCEEEEEEECGGGGTT
T ss_pred             EEEEEECCCcHHHHHHHHHHHHHhCEEEEEEECCCCccccccCchHhHHH-HHHHHH----HcCCCeEEEEEECCCCCCC
Confidence            899999999999988888899999999999999864210      01111 111111    23554 7889999998654


Q ss_pred             cccCH----HHHHHHHHHcC-----CeEEEeeccCCCcHHH
Q 028300          136 RVVSR----EEGIALAKEHG-----SLFLECSAKTRENVEQ  167 (211)
Q Consensus       136 ~~v~~----~~~~~~~~~~~-----~~~~~~Sa~~~~gv~~  167 (211)
                      .....    .+...+....+     ++++.+|+.+|.|+-+
T Consensus       160 d~~~~~~~~~el~~~l~~~~~~~~~i~~ipiSa~~G~ni~~  200 (239)
T d1f60a3         160 DESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIE  200 (239)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTB
T ss_pred             CHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEEccCCCccee
Confidence            43222    22333343333     5689999999988743

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.68  E-value=1.7e-17  Score=119.94  Aligned_cols=153  Identities=18%  Similarity=0.183  Sum_probs=92.6

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhhCCC------------------------------CCCCCccceeeEEEEEEECCEEEE
Q 028300           14 SFKILLIGDSGVGKSSLLVSFISSSV------------------------------DDLSPTIGVDFKIKLLTVAGKRLK   63 (211)
Q Consensus        14 ~~~I~v~G~~~~GKssli~~l~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~~~~   63 (211)
                      .++|+++|+.++|||||+.+|+...-                              .......|.+.......++.....
T Consensus         3 ~iNi~viGHVd~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~~~   82 (224)
T d1jnya3           3 HLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKYF   82 (224)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSCE
T ss_pred             ccEEEEEecCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCcccccccccccCchhhhcCCccccceEEEEecCCce
Confidence            68999999999999999999863110                              001112233333333344455678


Q ss_pred             EEEEeCCChhhhccchhhhccCCcEEEEEEECCChhhHHH--HHHHHHHHhhhhccCCCccEEEEeecCCCCCCc--ccC
Q 028300           64 LTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTN--LSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSER--VVS  139 (211)
Q Consensus        64 ~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~--~v~  139 (211)
                      +.|+|+|||..|.......++.+|+.|+|+|+.+...-..  ......+.+.........+++++.||+|+....  ...
T Consensus        83 i~iiDtPGH~df~~~~~~g~~~~D~allVVda~~G~~~~t~~~~~qt~e~l~~~~~~~~~~iIv~iNK~D~~~~~~~~~~  162 (224)
T d1jnya3          83 FTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYDEKR  162 (224)
T ss_dssp             EEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSSTTCHHH
T ss_pred             eEEeeCCCcHHHHHHHHHHHHhhceEEEEEecccCcccccccccchhHHHHHHHHHhCCCceEEEEEcccCCCccccHHH
Confidence            9999999999999989999999999999999997421110  000011111111112344688899999986422  111


Q ss_pred             H----HHHHHHHHHc-----CCeEEEeeccCCCcHH
Q 028300          140 R----EEGIALAKEH-----GSLFLECSAKTRENVE  166 (211)
Q Consensus       140 ~----~~~~~~~~~~-----~~~~~~~Sa~~~~gv~  166 (211)
                      .    .+...+...+     .++++++||..|.|+.
T Consensus       163 ~~~v~~~i~~~~~~~~~~~~~i~~IPISA~~G~NV~  198 (224)
T d1jnya3         163 YKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNIT  198 (224)
T ss_dssp             HHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTT
T ss_pred             HHHHHHHHHhHHHhcCCCcccCeEEEEEccCCCCcc
Confidence            1    2223333333     3568999999999874

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.68  E-value=1.4e-17  Score=121.55  Aligned_cols=155  Identities=19%  Similarity=0.161  Sum_probs=83.0

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhhCCC--C----------------------------CCCCccceeeEEEEEEECCEE
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFISSSV--D----------------------------DLSPTIGVDFKIKLLTVAGKR   61 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~~~~~--~----------------------------~~~~~~~~~~~~~~~~~~~~~   61 (211)
                      ...++|+++|+.++|||||+.+|+...-  .                            ......+.+.......+....
T Consensus        22 k~~iNi~iiGHVD~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~  101 (245)
T d1r5ba3          22 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH  101 (245)
T ss_dssp             CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS
T ss_pred             CCceEEEEEeeCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCCccchhhhhhhccccccccCcccccccccccccc
Confidence            4578999999999999999999953110  0                            000111222222222223344


Q ss_pred             EEEEEEeCCChhhhccchhhhccCCcEEEEEEECCChhhH---H---HHHHHHHHHhhhhccCCCc-cEEEEeecCCCCC
Q 028300           62 LKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETF---T---NLSDVWAKEVDLYSTNQDC-VKMLVGNKVDRDS  134 (211)
Q Consensus        62 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~---~---~~~~~~~~~~~~~~~~~~~-p~viv~nK~Dl~~  134 (211)
                      ..+.+.|+|||..|.......+..+|++++|+|+.+..--   .   .... .+..+.    ..++ ++++++||+|+..
T Consensus       102 ~~i~~iDtPGH~df~~~~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT~e-~l~l~~----~~~i~~iiv~iNKmD~~~  176 (245)
T d1r5ba3         102 RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTRE-HAVLAR----TQGINHLVVVINKMDEPS  176 (245)
T ss_dssp             EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHH-HHHHHH----HTTCSSEEEEEECTTSTT
T ss_pred             ceeeeecccccccchhhhhhhhhhhcceeeEEEcCCCccCCccccccchHH-HHHHHH----HcCCCeEEEEEEcCCCCc
Confidence            6789999999999988888889999999999999874100   0   1111 111111    2244 4789999999864


Q ss_pred             Ccc--cCHHH----HHHHHHHc-------CCeEEEeeccCCCcHHHHHHH
Q 028300          135 ERV--VSREE----GIALAKEH-------GSLFLECSAKTRENVEQCFEQ  171 (211)
Q Consensus       135 ~~~--v~~~~----~~~~~~~~-------~~~~~~~Sa~~~~gv~~l~~~  171 (211)
                      .+.  -..++    ...+....       .++++++||++|+||.++++.
T Consensus       177 ~~~~e~~~~ei~~~l~~~l~~i~~~~~~~~v~~VPiSA~~G~nI~~~~~s  226 (245)
T d1r5ba3         177 VQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVDS  226 (245)
T ss_dssp             CSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCCCT
T ss_pred             cchhHHHHHHHHHHHHHHHHHHhCcCcccCCEEEEeeccCCCCcccchhc
Confidence            321  11111    22222221       257999999999999765443

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.62  E-value=2.3e-15  Score=110.72  Aligned_cols=128  Identities=17%  Similarity=0.115  Sum_probs=76.8

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhcc-------chh--hh
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRT-------LTS--SY   82 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~-------~~~--~~   82 (211)
                      ..+++|+++|.+|+|||||+|.+++.......+..+++...........+..+.|+||||..+...       ...  ..
T Consensus        30 ~~~l~I~LvG~tg~GKSSliN~ilg~~~~~vs~~~~~T~~~~~~~~~~~g~~i~viDTPGl~~~~~~~~~~~~~i~~~~~  109 (257)
T d1h65a_          30 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLL  109 (257)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTT
T ss_pred             CCCcEEEEECCCCCcHHHHHHHHhCCCceeecCCCCcceeEEEEEEEeccEEEEEEeeecccCCcchHHHHHHHHHHHHh
Confidence            467999999999999999999999877544344444433333332222345789999999532211       111  12


Q ss_pred             ccCCcEEEEEEECCChh-hHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCH
Q 028300           83 YRGAQGIILVYDVTRRE-TFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSR  140 (211)
Q Consensus        83 ~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~  140 (211)
                      ....|+++||++++... +-.+... +......+....-.+++||+||+|...++....
T Consensus       110 ~~~~~~il~v~~~~~~r~~~~~~~~-l~~l~~~fg~~~~~~~ivv~t~~D~~~~~~~~~  167 (257)
T d1h65a_         110 DKTIDVLLYVDRLDAYRVDNLDKLV-AKAITDSFGKGIWNKAIVALTHAQFSPPDGLPY  167 (257)
T ss_dssp             TCEECEEEEEEESSCCCCCHHHHHH-HHHHHHHHCGGGGGGEEEEEECCSCCCGGGCCH
T ss_pred             cCCCCeEEEEEECCCCCCCHHHHHH-HHHHHHHcchhhhhCEEEEEECcccCCcCCCcH
Confidence            24568899999887532 1111111 222222221223458899999999876554443

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.62  E-value=1.8e-15  Score=117.81  Aligned_cols=159  Identities=16%  Similarity=0.243  Sum_probs=94.1

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhhCCCCC--C--CCccceeeEEEEEEECCEEEEEEEEeCCChhhhcc-----chhhhc
Q 028300           13 LSFKILLIGDSGVGKSSLLVSFISSSVDD--L--SPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRT-----LTSSYY   83 (211)
Q Consensus        13 ~~~~I~v~G~~~~GKssli~~l~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~-----~~~~~~   83 (211)
                      .+++|+|+|.+|+|||||+|+|++.....  .  ....+++.....+...+ ...+.||||||......     +....+
T Consensus        55 ~~l~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~~~g~~~tT~~~~~~~~~~-~~~~~l~DtPG~~~~~~~~~~~~~~~~~  133 (400)
T d1tq4a_          55 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPN-IPNVVFWDLPGIGSTNFPPDTYLEKMKF  133 (400)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSS-CTTEEEEECCCGGGSSCCHHHHHHHTTG
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCcCCCccCCCCCCCCceeeeeeeccC-CCeEEEEeCCCcccccccHHHHHHHhhh
Confidence            46899999999999999999999865411  1  12223333333333322 23478999999543221     223345


Q ss_pred             cCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCC-------CCcccCHHHH--------HHHHH
Q 028300           84 RGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRD-------SERVVSREEG--------IALAK  148 (211)
Q Consensus        84 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~-------~~~~v~~~~~--------~~~~~  148 (211)
                      ..+|.++++.|..-.+  .+. . +...+..    .++|+++|.||+|..       .......+..        .....
T Consensus       134 ~~~d~~l~~~~~~~~~--~d~-~-l~~~l~~----~~k~~~~V~nK~D~~~~~~~~~~~~~~~~e~~l~~ir~~~~~~l~  205 (400)
T d1tq4a_         134 YEYDFFIIISATRFKK--NDI-D-IAKAISM----MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFR  205 (400)
T ss_dssp             GGCSEEEEEESSCCCH--HHH-H-HHHHHHH----TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             hcceEEEEecCCCCCH--HHH-H-HHHHHHH----cCCCEEEEEeCcccccchhhhcccccccHHHHHHHHHHHHHHHHH
Confidence            6789998887744221  222 1 4444443    378999999999952       1111111111        11122


Q ss_pred             HcCC---eEEEeeccC--CCcHHHHHHHHHHHHHhcc
Q 028300          149 EHGS---LFLECSAKT--RENVEQCFEQLALKIMEVP  180 (211)
Q Consensus       149 ~~~~---~~~~~Sa~~--~~gv~~l~~~i~~~~~~~~  180 (211)
                      ..+.   ++|.+|..+  ..|+.++.+++.+.+.+.+
T Consensus       206 ~~~~~~~~vflvS~~~~~~~d~~~L~~~l~~~L~~~~  242 (400)
T d1tq4a_         206 ENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIYK  242 (400)
T ss_dssp             HTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGGG
T ss_pred             HcCCCCCCEEEecCCcccccCHHHHHHHHHHHhHHHH
Confidence            2232   588888765  3589999999888776654

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.53  E-value=1.5e-14  Score=109.58  Aligned_cols=114  Identities=19%  Similarity=0.262  Sum_probs=78.0

Q ss_pred             eee-EEEEEcCCCCcHHHHHHHHhhCCC--C-------------CCCCccceee--EEEEEEE--------------CCE
Q 028300           13 LSF-KILLIGDSGVGKSSLLVSFISSSV--D-------------DLSPTIGVDF--KIKLLTV--------------AGK   60 (211)
Q Consensus        13 ~~~-~I~v~G~~~~GKssli~~l~~~~~--~-------------~~~~~~~~~~--~~~~~~~--------------~~~   60 (211)
                      ..+ +|+|+|+.++|||||+.+|+...-  .             ......+.+.  ....+..              ++.
T Consensus        15 ~~IRNI~iiGhvd~GKTTL~d~Ll~~~g~i~~~~~~~~~~~D~~~~E~eRgiTi~~~~~~l~~~~~~~~~~~~~~~~~~~   94 (341)
T d1n0ua2          15 TNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGN   94 (341)
T ss_dssp             GGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSS
T ss_pred             ccCcEEEEEeCCCCcHHHHHHHHHHHCCCccccccccccccccchhHHhcCceEeCCEEEEEeccCcccccchhcccccc
Confidence            446 499999999999999999972110  0             0000111111  1112211              335


Q ss_pred             EEEEEEEeCCChhhhccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCC
Q 028300           61 RLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDR  132 (211)
Q Consensus        61 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl  132 (211)
                      .+.+.|+||||+.+|.......++-+|++++|+|+.+.-....... |....     ..++|+++++||+|.
T Consensus        95 ~~~inliDtPGh~dF~~ev~~al~~~D~allVVda~eGv~~qT~~~-~~~a~-----~~~~p~i~viNKiDr  160 (341)
T d1n0ua2          95 SFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETV-LRQAL-----GERIKPVVVINKVDR  160 (341)
T ss_dssp             EEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHH-HHHHH-----HTTCEEEEEEECHHH
T ss_pred             ceEEEEEcCCCcHHHHHHHHHHHhhcCceEEEEecccCcchhHHHH-HHHHH-----HcCCCeEEEEECccc
Confidence            6789999999999999888899999999999999998644443333 33332     348899999999996

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=99.43  E-value=1.6e-14  Score=105.17  Aligned_cols=111  Identities=21%  Similarity=0.092  Sum_probs=66.7

Q ss_pred             EEEEEEeCCChhhhccchhh---h--ccCCcEEEEEEECCC---hhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCC
Q 028300           62 LKLTIWDTAGQERFRTLTSS---Y--YRGAQGIILVYDVTR---RETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRD  133 (211)
Q Consensus        62 ~~~~l~D~~g~~~~~~~~~~---~--~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~  133 (211)
                      ..+.+.|+||+.++......   .  ....+.+++++|+..   +..+..... ......   .....|.++|+||+|+.
T Consensus        95 ~~~~~id~~g~~~~~~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~l-~~~~~~---~~~~~~~ivvinK~D~~  170 (244)
T d1yrba1          95 NDYVLIDTPGQMETFLFHEFGVRLMENLPYPLVVYISDPEILKKPNDYCFVRF-FALLID---LRLGATTIPALNKVDLL  170 (244)
T ss_dssp             CSEEEEECCSSHHHHHHSHHHHHHHHTSSSCEEEEEECGGGCCSHHHHHHHHH-HHHHHH---HHHTSCEEEEECCGGGC
T ss_pred             cceeeeccccchhHHHHHHHHHHHHhhccCceEEEEeccccccCchhHhhHHH-HHHHHH---HHhCCCceeeeeccccc
Confidence            35888999998765332211   1  224568999999653   433333221 111111   12478999999999986


Q ss_pred             CCcccCHHH-----------------------HHH---HHHH--cCCeEEEeeccCCCcHHHHHHHHHHHH
Q 028300          134 SERVVSREE-----------------------GIA---LAKE--HGSLFLECSAKTRENVEQCFEQLALKI  176 (211)
Q Consensus       134 ~~~~v~~~~-----------------------~~~---~~~~--~~~~~~~~Sa~~~~gv~~l~~~i~~~~  176 (211)
                      .........                       ...   ....  ..++++++||++|+|+++++..|.+.+
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vSa~~geGi~~L~~~l~e~~  241 (244)
T d1yrba1         171 SEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHY  241 (244)
T ss_dssp             CHHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            543211100                       000   0111  246899999999999999999988754

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=99.42  E-value=3.8e-13  Score=101.40  Aligned_cols=153  Identities=12%  Similarity=0.120  Sum_probs=88.4

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhhCCC-----------CCCCCc----------------cceeeEEEEEEECC-----
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFISSSV-----------DDLSPT----------------IGVDFKIKLLTVAG-----   59 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~~~~~-----------~~~~~~----------------~~~~~~~~~~~~~~-----   59 (211)
                      .+.++|+|.|+||+|||||+++|.....           +...+.                .......+.....+     
T Consensus        49 ~~~~~igitG~pGaGKSTli~~l~~~~~~~g~~vaViavDpss~~~gg~llgdr~rm~~~~~~~~~~ir~~~~~~~~gg~  128 (323)
T d2qm8a1          49 GRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLGGV  128 (323)
T ss_dssp             CCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHHHH
T ss_pred             CCceEEeeeCCCCCCHHHHHHHHHHHHhhcCCceeeeecccccHHHHhccccchhhHHHHhcccceeeccccccccccch
Confidence            4679999999999999999999973210           001110                00111111110000     


Q ss_pred             -------------EEEEEEEEeCCChhhhccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEE
Q 028300           60 -------------KRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLV  126 (211)
Q Consensus        60 -------------~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv  126 (211)
                                   .++.+.|++|.|.-.-.   .....-+|.+++|......+..+......+          .++=++|
T Consensus       129 ~~~~~~~i~~~~~~g~d~iiiETVG~gq~e---~~~~~~~D~~v~v~~p~~GD~iQ~~k~gil----------E~aDi~v  195 (323)
T d2qm8a1         129 AAKTRETMLLCEAAGFDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGIKKGIF----------ELADMIA  195 (323)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------CCTTHH----------HHCSEEE
T ss_pred             hHHHHHHHHhhccCCCCeEEEeehhhhhhh---hhhhcccceEEEEeeccchhhhhhhhhhHh----------hhhheee
Confidence                         12456777887743222   123345899999999988765444332222          2233899


Q ss_pred             eecCCCCCCcccCHHHHHHHHHH----------cCCeEEEeeccCCCcHHHHHHHHHHHHH
Q 028300          127 GNKVDRDSERVVSREEGIALAKE----------HGSLFLECSAKTRENVEQCFEQLALKIM  177 (211)
Q Consensus       127 ~nK~Dl~~~~~v~~~~~~~~~~~----------~~~~~~~~Sa~~~~gv~~l~~~i~~~~~  177 (211)
                      +||+|+.+...........+...          +..+++.+||.++.|+++++++|.+...
T Consensus       196 vNKaD~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~V~~~Sa~~g~Gi~el~~~I~~~~~  256 (323)
T d2qm8a1         196 VNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS  256 (323)
T ss_dssp             EECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred             EeccccccchHHHHHHHHHHHHHhhcccccccCCCCceEEEEecCCCCHHHHHHHHHHHHH
Confidence            99999866544333222222221          3457999999999999999999876543

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=99.40  E-value=4.3e-13  Score=101.22  Aligned_cols=85  Identities=15%  Similarity=0.120  Sum_probs=50.7

Q ss_pred             hccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCH--HHHHHHHH-------HcCC
Q 028300           82 YYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSR--EEGIALAK-------EHGS  152 (211)
Q Consensus        82 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~--~~~~~~~~-------~~~~  152 (211)
                      +...+|.+++|.+....+........+++.          +=++|+||+|+........  .+......       .+..
T Consensus       164 i~~~aD~~l~v~~P~~Gd~iq~~k~gi~e~----------aDi~VvNKaD~~~~~~~~~~~~~~~~al~~~~~~~~~w~p  233 (327)
T d2p67a1         164 VARMVDCFISLQIAGGGDDLQGIKKGLMEV----------ADLIVINKDDGDNHTNVAIARHMYESALHILRRKYDEWQP  233 (327)
T ss_dssp             HHTTCSEEEEEECC------CCCCHHHHHH----------CSEEEECCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCC
T ss_pred             hhhccceEEEEecCCCchhhhhhchhhhcc----------ccEEEEEeecccchHHHHHHHHHHHHHhhhcccCCCCCcc
Confidence            456689999999877655444333322222          2389999999865433221  11111111       2345


Q ss_pred             eEEEeeccCCCcHHHHHHHHHHHH
Q 028300          153 LFLECSAKTRENVEQCFEQLALKI  176 (211)
Q Consensus       153 ~~~~~Sa~~~~gv~~l~~~i~~~~  176 (211)
                      +++.|||.+|.|++++++.|.+..
T Consensus       234 ~V~~~SA~~g~Gi~eL~~~I~~~~  257 (327)
T d2p67a1         234 RVLTCSALEKRGIDEIWHAIIDFK  257 (327)
T ss_dssp             EEEECBGGGTBSHHHHHHHHHHHH
T ss_pred             eeEEEEeeCCCCHHHHHHHHHHHH
Confidence            799999999999999999987633

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=99.32  E-value=1.9e-11  Score=90.56  Aligned_cols=81  Identities=17%  Similarity=0.211  Sum_probs=50.4

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhhCCC--CCCCCcc-ceeeEEEEEEECC-------------E--EEEEEEEeCCChh--
Q 028300           14 SFKILLIGDSGVGKSSLLVSFISSSV--DDLSPTI-GVDFKIKLLTVAG-------------K--RLKLTIWDTAGQE--   73 (211)
Q Consensus        14 ~~~I~v~G~~~~GKssli~~l~~~~~--~~~~~~~-~~~~~~~~~~~~~-------------~--~~~~~l~D~~g~~--   73 (211)
                      .++|+++|.|+||||||++++.+...  ..|..+. ....-.+  .+.+             +  ...+.++|+||.-  
T Consensus         2 ~~~~GivG~Pn~GKSTlf~~lt~~~~~~~~ypf~ti~pn~gvv--~v~d~r~~~l~~~~~~~~~~~a~i~~~Di~GLi~g   79 (278)
T d1jala1           2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVV--PMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAG   79 (278)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEE--ECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTT
T ss_pred             CceEEEECCCCCCHHHHHHHHHCCCCccccCCCCCCCCceEEE--ecccHhHHHHHHhcCCCceeeeeEEEEEccccCCC
Confidence            57999999999999999999997764  2222111 1111111  1111             1  1358899999932  


Q ss_pred             --h---hccchhhhccCCcEEEEEEECC
Q 028300           74 --R---FRTLTSSYYRGAQGIILVYDVT   96 (211)
Q Consensus        74 --~---~~~~~~~~~~~~d~~i~v~d~~   96 (211)
                        +   .....-..++++|++++|+|+.
T Consensus        80 a~~g~Glg~~FL~~ir~~d~LihVVr~f  107 (278)
T d1jala1          80 ASKGEGLGNKFLANIRETDAIGHVVRCF  107 (278)
T ss_dssp             HHHHGGGTCCHHHHHHTCSEEEEEEECS
T ss_pred             cccCCCccHHHHHHHHhccceEEEeecc
Confidence              1   1222345578999999999874

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.28  E-value=1.8e-11  Score=91.44  Aligned_cols=85  Identities=20%  Similarity=0.195  Sum_probs=54.5

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeE--EEEEEECC---------------EEEEEEEEeCCChhh-
Q 028300           13 LSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFK--IKLLTVAG---------------KRLKLTIWDTAGQER-   74 (211)
Q Consensus        13 ~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~--~~~~~~~~---------------~~~~~~l~D~~g~~~-   74 (211)
                      ...+|+++|.|+||||||++++++.........++++..  .-.+.+.+               ....+.+.|+||.-. 
T Consensus         9 ~~~kiGivG~Pn~GKSTlfnalT~~~~~~~anypftTi~pn~g~v~v~d~r~~~l~~~~~~~~~~~~~i~~~DvaGLv~g   88 (296)
T d1ni3a1           9 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKG   88 (296)
T ss_dssp             SCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHCCCCCCcCCCCccCccCCeEEEeccccchhhhhhcccCCceecccceeeeccccccc
Confidence            558999999999999999999997653222222222211  11122222               234688999998322 


Q ss_pred             ------hccchhhhccCCcEEEEEEECCC
Q 028300           75 ------FRTLTSSYYRGAQGIILVYDVTR   97 (211)
Q Consensus        75 ------~~~~~~~~~~~~d~~i~v~d~~~   97 (211)
                            ........++++|++++|+|+.+
T Consensus        89 A~~g~GLGn~fL~~ir~~d~lihVV~~f~  117 (296)
T d1ni3a1          89 ASTGVGLGNAFLSHVRAVDAIYQVVRAFD  117 (296)
T ss_dssp             CCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             cccccccHHHHHHHhhccceeEEEEeccC
Confidence                  11234455789999999999865

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.08  E-value=1.3e-09  Score=81.31  Aligned_cols=118  Identities=23%  Similarity=0.229  Sum_probs=70.1

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhhCCCCC--CCCccceeeEEEE-------------------------------------
Q 028300           14 SFKILLIGDSGVGKSSLLVSFISSSVDD--LSPTIGVDFKIKL-------------------------------------   54 (211)
Q Consensus        14 ~~~I~v~G~~~~GKssli~~l~~~~~~~--~~~~~~~~~~~~~-------------------------------------   54 (211)
                      ..+|+|+|..++|||||+|+|++..+-.  ..++.........                                     
T Consensus        26 ~P~ivvvG~~SsGKSsliNaLlg~~~lP~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (299)
T d2akab1          26 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTG  105 (299)
T ss_dssp             CCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHCS
T ss_pred             CCeEEEEcCCCCCHHHHHHHHhCCCcCCCCCCccccCCEEEEEeccccceeEEEeCCCCeeCCHHHHHHHHHHHHHHhhC
Confidence            4489999999999999999999888622  2222111000000                                     


Q ss_pred             -------------EEECCEEEEEEEEeCCChhh-------------hccchhhhccCCc-EEEEEEECCChhhHHHHHHH
Q 028300           55 -------------LTVAGKRLKLTIWDTAGQER-------------FRTLTSSYYRGAQ-GIILVYDVTRRETFTNLSDV  107 (211)
Q Consensus        55 -------------~~~~~~~~~~~l~D~~g~~~-------------~~~~~~~~~~~~d-~~i~v~d~~~~~s~~~~~~~  107 (211)
                                   +.... ...+.|+|+||...             ...+...++.+.+ ++++|.++...-....... 
T Consensus       106 ~~~~~~~~~i~l~~~~p~-~~~l~liD~PG~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~il~v~~a~~~~~~~~~~~-  183 (299)
T d2akab1         106 TNKGISPVPINLRVYSPH-VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK-  183 (299)
T ss_dssp             STTCCCSCCEEEEEEETT-CCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHH-
T ss_pred             CCcCcCCccEEEEEcCCC-CCCeeEEccCCccccccCCcchhHHHHHHHHHHHHhcCccceeeeecccccchhhhHHHH-
Confidence                         00000 11378999999422             1233455666666 5556666765544444444 


Q ss_pred             HHHHhhhhccCCCccEEEEeecCCCCCCcc
Q 028300          108 WAKEVDLYSTNQDCVKMLVGNKVDRDSERV  137 (211)
Q Consensus       108 ~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~  137 (211)
                      +...+.    ....++++|+||+|..+...
T Consensus       184 ~~~~~~----~~~~r~i~Vltk~D~~~~~~  209 (299)
T d2akab1         184 IAKEVD----PQGQRTIGVITKLDLMDEGT  209 (299)
T ss_dssp             HHHHHC----TTCSSEEEEEECGGGSCTTC
T ss_pred             HHHHhC----cCCCceeeEEeccccccchh
Confidence            444433    44678999999999865533

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=98.97  E-value=7.1e-10  Score=83.00  Aligned_cols=68  Identities=24%  Similarity=0.281  Sum_probs=41.5

Q ss_pred             EEEEEeCCChhh-------------hccchhhhccCCcEEEEEE-ECCChhhHHHHHHHHHHHhhhhccCCCccEEEEee
Q 028300           63 KLTIWDTAGQER-------------FRTLTSSYYRGAQGIILVY-DVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGN  128 (211)
Q Consensus        63 ~~~l~D~~g~~~-------------~~~~~~~~~~~~d~~i~v~-d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~n  128 (211)
                      .+.++|+||...             ...++..++.+++.+++++ +......-..... +...+.    .....+++|+|
T Consensus       132 ~l~iiDtPG~~~~~~~~~~~~~~~~~~~~~~~yi~~~~~~il~v~~~~~~~~~~~~~~-~~~~~~----~~~~r~i~Vit  206 (306)
T d1jwyb_         132 NLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQ-LAKEVD----PEGKRTIGVIT  206 (306)
T ss_dssp             SEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHH-HHHHHC----SSCSSEEEEEE
T ss_pred             CceEecCCCccccccCCcchhHHHHHHHHHHHHHhCCCceeEEeecccccccccHHHH-HHHHhC----cCCCeEEEEEe
Confidence            477999999432             1244566788898766655 4443322222222 333332    34668999999


Q ss_pred             cCCCCCC
Q 028300          129 KVDRDSE  135 (211)
Q Consensus       129 K~Dl~~~  135 (211)
                      |+|....
T Consensus       207 k~D~~~~  213 (306)
T d1jwyb_         207 KLDLMDK  213 (306)
T ss_dssp             CTTSSCS
T ss_pred             ccccccc
Confidence            9998544

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.96  E-value=6.1e-10  Score=83.86  Aligned_cols=82  Identities=23%  Similarity=0.243  Sum_probs=46.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCCC--CCCC-----CccceeeEEEEE----------------EECCEEEEEEEEeCCCh
Q 028300           16 KILLIGDSGVGKSSLLVSFISSSV--DDLS-----PTIGVDFKIKLL----------------TVAGKRLKLTIWDTAGQ   72 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~~~--~~~~-----~~~~~~~~~~~~----------------~~~~~~~~~~l~D~~g~   72 (211)
                      +|+++|.|+||||||+|+|.+...  .++.     |..|........                ........+.++|+||.
T Consensus         2 ~v~lvG~pn~GKStlfn~lt~~~~~v~nypftT~~pn~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~pGl   81 (319)
T d1wxqa1           2 EIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAGL   81 (319)
T ss_dssp             EEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC--
T ss_pred             cEeEECCCCCCHHHHHHHHHCCCCchhcCCCCcccCccceeeCCCCchhhhhhhccCccccccccccccccEEEEECCCc
Confidence            799999999999999999997654  2221     112222211110                11123467999999994


Q ss_pred             hhh-------ccchhhhccCCcEEEEEEECCC
Q 028300           73 ERF-------RTLTSSYYRGAQGIILVYDVTR   97 (211)
Q Consensus        73 ~~~-------~~~~~~~~~~~d~~i~v~d~~~   97 (211)
                      -..       .......++.+|++++|+|+.+
T Consensus        82 i~ga~~g~~~~~~~l~~i~~~d~ii~VVd~~~  113 (319)
T d1wxqa1          82 VPGAHEGRGLGNKFLDDLRMASALIHVVDATG  113 (319)
T ss_dssp             -------------CCCSSTTCSEEEEEEETTC
T ss_pred             ccchhcccchHHHHHHhhccceEEEEEecccc
Confidence            221       1122334578899999999863

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=98.88  E-value=1.1e-09  Score=80.60  Aligned_cols=60  Identities=23%  Similarity=0.365  Sum_probs=40.1

Q ss_pred             CCceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCCh
Q 028300           10 SYDLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQ   72 (211)
Q Consensus        10 ~~~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~   72 (211)
                      .....++|+|+|.||||||||+|+|.+.....+.+.+|++.....+..+.   .+.++||||.
T Consensus       108 ~~~~~~~v~vvG~PNvGKSsliN~L~~~~~~~~~~~pG~Tr~~~~i~~~~---~~~l~DTPGi  167 (273)
T d1puja_         108 VKPRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKVGK---ELELLDTPGI  167 (273)
T ss_dssp             CCCCCEEEEEEESTTSSHHHHHHHHHTSCCC------------CCEEETT---TEEEEECCCC
T ss_pred             CCCCceEEEEEecCccchhhhhhhhhccceEEECCcccccccceEEECCC---CeEEecCCCc
Confidence            34578999999999999999999999988888888999888766665433   4889999994

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.68  E-value=2.9e-08  Score=70.11  Aligned_cols=88  Identities=25%  Similarity=0.192  Sum_probs=60.2

Q ss_pred             hhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHH--HcCCeEEE
Q 028300           79 TSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAK--EHGSLFLE  156 (211)
Q Consensus        79 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~--~~~~~~~~  156 (211)
                      .+..+.+.|.+++|+++.+|+.-....+.|+....    ..++|.+||+||+||.++.+.  ........  ..+.+++.
T Consensus         4 ~RP~vANiD~vliV~s~~~P~~~~~~ldR~Lv~a~----~~~i~pvIvlnK~DL~~~~~~--~~~~~~~~~~~~~~~v~~   77 (225)
T d1u0la2           4 TKPHVANVDQVILVVTVKMPETSTYIIDKFLVLAE----KNELETVMVINKMDLYDEDDL--RKVRELEEIYSGLYPIVK   77 (225)
T ss_dssp             TTTTEESCCEEEEEECSSTTCCCHHHHHHHHHHHH----HTTCEEEEEECCGGGCCHHHH--HHHHHHHHHHTTTSCEEE
T ss_pred             CCCCcccCCEEEEEEeCCCCCCCHHHHHHHHHHHH----HcCCCEEEEEeCcccCCHHHH--HHHHHhhcccccceeEEE
Confidence            34567899999999999887543333332444443    358999999999999654322  12222222  23468999


Q ss_pred             eeccCCCcHHHHHHHH
Q 028300          157 CSAKTRENVEQCFEQL  172 (211)
Q Consensus       157 ~Sa~~~~gv~~l~~~i  172 (211)
                      +|++++.|++++.+++
T Consensus        78 vSa~~~~g~~~L~~~l   93 (225)
T d1u0la2          78 TSAKTGMGIEELKEYL   93 (225)
T ss_dssp             CCTTTCTTHHHHHHHH
T ss_pred             eccccchhHhhHHHHh
Confidence            9999999998877654

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.39  E-value=6.9e-08  Score=68.32  Aligned_cols=89  Identities=13%  Similarity=0.099  Sum_probs=60.6

Q ss_pred             hhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCH--HHHHHHHHHcCCeEEE
Q 028300           79 TSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSR--EEGIALAKEHGSLFLE  156 (211)
Q Consensus        79 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~--~~~~~~~~~~~~~~~~  156 (211)
                      .+..+.+.|.+++|+++.+|+.-....+.++...    ...+++.+||+||+||.+..+...  ..........+.+++.
T Consensus         4 ~RP~vANiD~~~iV~s~~~P~~~~~~idR~Lv~a----~~~~i~pvIvlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~~   79 (231)
T d1t9ha2           4 IRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLV----EANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYL   79 (231)
T ss_dssp             TTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHH----HTTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEEE
T ss_pred             CCCCccccCEEEEEEECCCCCCCHHHHHHHHHHH----HHcCCCEEEEEecccccccHHHHHHHHHHHHHHhhcccccee
Confidence            4456789999999999988753333332244333    356889999999999975433221  1223334557899999


Q ss_pred             eeccCCCcHHHHHHH
Q 028300          157 CSAKTRENVEQCFEQ  171 (211)
Q Consensus       157 ~Sa~~~~gv~~l~~~  171 (211)
                      +|+.++.|++++..+
T Consensus        80 ~Sa~~~~gl~~L~~~   94 (231)
T d1t9ha2          80 TSSKDQDSLADIIPH   94 (231)
T ss_dssp             CCHHHHTTCTTTGGG
T ss_pred             eecCChhHHHHHHHh
Confidence            999999998877544

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=98.32  E-value=1.3e-07  Score=66.19  Aligned_cols=144  Identities=16%  Similarity=0.213  Sum_probs=73.4

Q ss_pred             CCCceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCC----------------------ccceeeEEEEEEE---------
Q 028300            9 NSYDLSFKILLIGDSGVGKSSLLVSFISSSVDDLSP----------------------TIGVDFKIKLLTV---------   57 (211)
Q Consensus         9 ~~~~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~----------------------~~~~~~~~~~~~~---------   57 (211)
                      .+...+.-|+++|++||||||.+-+|...-......                      ..+..+....-..         
T Consensus         7 ~~~k~p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt~R~ga~eQL~~~a~~l~v~~~~~~~~~~~~~~~~~a   86 (211)
T d1j8yf2           7 IPDKIPYVIMLVGVQGTGKATTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRG   86 (211)
T ss_dssp             SCSSSSEEEEEECSCCC----HHHHHHHHHHHTTCCEEEEECCCSSHHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHH
T ss_pred             CCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEEeeccccchhHHHHHhccccCcceeecccchhhhHHHHHH
Confidence            334456678889999999999988876321100000                      0011111000000         


Q ss_pred             ----CCEEEEEEEEeCCChhhhcc--c----hhh--hccCCcEEEEEEECCChh-hHHHHHHHHHHHhhhhccCCCccEE
Q 028300           58 ----AGKRLKLTIWDTAGQERFRT--L----TSS--YYRGAQGIILVYDVTRRE-TFTNLSDVWAKEVDLYSTNQDCVKM  124 (211)
Q Consensus        58 ----~~~~~~~~l~D~~g~~~~~~--~----~~~--~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~p~v  124 (211)
                          ...+..+.|+||+|...+..  .    ...  ..-+.+-+++|+|++... ....+.. +...+       + +--
T Consensus        87 ~~~~~~~~~d~IlIDTaGr~~~~~~~~~~~el~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~-~~~~~-------~-~~~  157 (211)
T d1j8yf2          87 VEKFLSEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQKAYDLASK-FNQAS-------K-IGT  157 (211)
T ss_dssp             HHHHHHTTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHHHH-HHHHC-------T-TEE
T ss_pred             HHHhhccCCceEEEecCCcCccchhhHHHHHHHHHHhhcCCceEEEEEecccCcchHHHHhh-hhccc-------C-cce
Confidence                01224689999999543321  0    111  122457789999987643 3333322 22111       2 225


Q ss_pred             EEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHH
Q 028300          125 LVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQ  167 (211)
Q Consensus       125 iv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~  167 (211)
                      +++||.|...    ..-.........+.|+..++  +|.++++
T Consensus       158 lI~TKlDet~----~~G~~l~~~~~~~lPi~~it--~Gq~v~D  194 (211)
T d1j8yf2         158 IIITKMDGTA----KGGGALSAVAATGATIKFIG--TGEKIDE  194 (211)
T ss_dssp             EEEECTTSCS----CHHHHHHHHHTTTCCEEEEE--CSSSTTC
T ss_pred             EEEecccCCC----cccHHHHHHHHHCcCEEEEe--CCCCccc
Confidence            7799999632    33455667778889977776  4655544

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.30  E-value=1.9e-07  Score=65.82  Aligned_cols=58  Identities=28%  Similarity=0.179  Sum_probs=36.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCCCCC---CCC----ccceeeEEEEEEECCEEEEEEEEeCCChhhhc
Q 028300           16 KILLIGDSGVGKSSLLVSFISSSVDD---LSP----TIGVDFKIKLLTVAGKRLKLTIWDTAGQERFR   76 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~~~~~---~~~----~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~   76 (211)
                      ..+++|++|||||||+|+|.....-.   ...    -..++.....+.+...   ..++||||..++.
T Consensus        97 t~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs~~~~rGrHTTt~~~l~~l~~g---g~iiDTPG~r~~~  161 (225)
T d1u0la2          97 ISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFG---GYVVDTPGFANLE  161 (225)
T ss_dssp             EEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTS---CEEESSCSSTTCC
T ss_pred             eEEEECCCCCCHHHHHHhhcchhhhhccCcccccCCCCccccceeEEEECCC---cEEEeCCcccccc
Confidence            56899999999999999998654311   111    1224444445555543   3678999976554

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=98.30  E-value=4.8e-07  Score=63.35  Aligned_cols=144  Identities=19%  Similarity=0.243  Sum_probs=77.2

Q ss_pred             CCCCceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCC----------------------ccceeeEEEEEEEC-------
Q 028300            8 SNSYDLSFKILLIGDSGVGKSSLLVSFISSSVDDLSP----------------------TIGVDFKIKLLTVA-------   58 (211)
Q Consensus         8 ~~~~~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~----------------------~~~~~~~~~~~~~~-------   58 (211)
                      +.+...+.-|+++|++||||||.+-+|...-......                      ..+..+.  ...-.       
T Consensus         5 ~~~~~~p~vi~lvGptGvGKTTTiAKLAa~~~~~~~kV~lit~Dt~R~gA~eQL~~~a~~l~i~~~--~~~~~~d~~~~~   82 (213)
T d1vmaa2           5 NVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVI--SHSEGADPAAVA   82 (213)
T ss_dssp             CCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEE--CCSTTCCHHHHH
T ss_pred             cCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEeecccccchhHHHHHHhhhcCcccc--ccCCCCcHHHHH
Confidence            3445667789999999999999988876321111000                      0011111  00000       


Q ss_pred             --------CEEEEEEEEeCCChhhhccc-------hhhhc-----cCCcEEEEEEECCCh-hhHHHHHHHHHHHhhhhcc
Q 028300           59 --------GKRLKLTIWDTAGQERFRTL-------TSSYY-----RGAQGIILVYDVTRR-ETFTNLSDVWAKEVDLYST  117 (211)
Q Consensus        59 --------~~~~~~~l~D~~g~~~~~~~-------~~~~~-----~~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~  117 (211)
                              .+.+.+.|+||+|...++..       +...+     ...+-.++|+|++.. +.+..+.. ....+.    
T Consensus        83 ~~~~~~~~~~~~d~ilIDTaGr~~~d~~~~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~-~~~~~~----  157 (213)
T d1vmaa2          83 FDAVAHALARNKDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQNGLVQAKI-FKEAVN----  157 (213)
T ss_dssp             HHHHHHHHHTTCSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHHHHHHHHHH-HHHHSC----
T ss_pred             HHHHHHHHHcCCCEEEEeccccccchHHHHHHHHHHHhhhhhccccccceeEEeeccccCcchhhhhhh-hccccC----
Confidence                    01345899999993322111       11111     124678999998764 23333333 222221    


Q ss_pred             CCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHH
Q 028300          118 NQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQC  168 (211)
Q Consensus       118 ~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l  168 (211)
                          +--+++||.|....    .-.+.......+.|+..++  +|.+++++
T Consensus       158 ----~~~lI~TKlDe~~~----~G~~l~~~~~~~~Pi~~i~--~Gq~v~Dl  198 (213)
T d1vmaa2         158 ----VTGIILTKLDGTAK----GGITLAIARELGIPIKFIG--VGEKAEDL  198 (213)
T ss_dssp             ----CCEEEEECGGGCSC----TTHHHHHHHHHCCCEEEEE--CSSSGGGE
T ss_pred             ----CceEEEecccCCCc----ccHHHHHHHHHCCCEEEEe--CCCCcccC
Confidence                33688999996322    1234556677788877776  45555443

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=98.29  E-value=5.1e-07  Score=66.02  Aligned_cols=91  Identities=11%  Similarity=0.048  Sum_probs=66.3

Q ss_pred             hhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEee
Q 028300           79 TSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECS  158 (211)
Q Consensus        79 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~S  158 (211)
                      ....+..+|++|+|+|+.++.+..+-.  +...+      .++|.++|+||+|+.+...  .+....+....+..++.+|
T Consensus         9 i~~~i~~~DvIl~V~DaR~P~ss~~~~--l~~~~------~~Kp~IlVlNK~DLv~~~~--~~~w~~~f~~~~~~~i~is   78 (273)
T d1puja_           9 VTEKLKLIDIVYELVDARIPMSSRNPM--IEDIL------KNKPRIMLLNKADKADAAV--TQQWKEHFENQGIRSLSIN   78 (273)
T ss_dssp             HHHHGGGCSEEEEEEETTSTTTTSCHH--HHHHC------SSSCEEEEEECGGGSCHHH--HHHHHHHHHTTTCCEEECC
T ss_pred             HHHHHHhCCEEEEEEECCCCCCCCCHH--HHHHH------cCCCeEEEEECccCCchHH--HHHHHHHHHhcCCccceee
Confidence            455788999999999999876644321  22222      2679999999999965432  2334455566678899999


Q ss_pred             ccCCCcHHHHHHHHHHHHHhc
Q 028300          159 AKTRENVEQCFEQLALKIMEV  179 (211)
Q Consensus       159 a~~~~gv~~l~~~i~~~~~~~  179 (211)
                      +.++.+...+.+.+.+.+.+.
T Consensus        79 a~~~~~~~~~~~~~~~~l~~~   99 (273)
T d1puja_          79 SVNGQGLNQIVPASKEILQEK   99 (273)
T ss_dssp             TTTCTTGGGHHHHHHHHHHHH
T ss_pred             cccCCCccccchhhhhhhhhh
Confidence            999999998888877766554

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=98.26  E-value=1.6e-07  Score=65.63  Aligned_cols=91  Identities=15%  Similarity=0.213  Sum_probs=52.1

Q ss_pred             EEEEEEeCCChhhhccc-------hhhhcc-----CCcEEEEEEECCCh-hhHHHHHHHHHHHhhhhccCCCccEEEEee
Q 028300           62 LKLTIWDTAGQERFRTL-------TSSYYR-----GAQGIILVYDVTRR-ETFTNLSDVWAKEVDLYSTNQDCVKMLVGN  128 (211)
Q Consensus        62 ~~~~l~D~~g~~~~~~~-------~~~~~~-----~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~~p~viv~n  128 (211)
                      +.+.|+||+|....+..       +...++     ..+-.++|.|+... +....+.. +...+.        +--+++|
T Consensus        92 ~d~ilIDTaGr~~~d~~~~~el~~l~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~-~~~~~~--------~~~lIlT  162 (211)
T d2qy9a2          92 IDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKL-FHEAVG--------LTGITLT  162 (211)
T ss_dssp             CSEEEECCCCCGGGHHHHHHHHHHHHHHHTTTCTTCCSEEEEEEEGGGTHHHHHHHHH-HHHHSC--------CCEEEEE
T ss_pred             CCEEEeccCCCccccHHHHHHHHHHHHHHhhhcccCcceeeeehhcccCcchHHHHhh-hhhccC--------CceEEEe
Confidence            45789999994322111       111222     24688999998763 33444433 222222        3368899


Q ss_pred             cCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHH
Q 028300          129 KVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQ  167 (211)
Q Consensus       129 K~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~  167 (211)
                      |.|....    .-.+.......+.|+..++  +|.++++
T Consensus       163 KlDe~~~----~G~~l~~~~~~~~Pi~~i~--~Gq~v~D  195 (211)
T d2qy9a2         163 KLDGTAK----GGVIFSVADQFGIPIRYIG--VGERIED  195 (211)
T ss_dssp             CCTTCTT----TTHHHHHHHHHCCCEEEEE--CSSSGGG
T ss_pred             ecCCCCC----ccHHHHHHHHHCCCEEEEe--CCCCccc
Confidence            9996332    2234556677788877776  5555544

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=98.20  E-value=1.3e-06  Score=60.79  Aligned_cols=91  Identities=14%  Similarity=0.142  Sum_probs=51.2

Q ss_pred             EEEEEEeCCChhhhccc-------hhhh-----ccCCcEEEEEEECCCh-hhHHHHHHHHHHHhhhhccCCCccEEEEee
Q 028300           62 LKLTIWDTAGQERFRTL-------TSSY-----YRGAQGIILVYDVTRR-ETFTNLSDVWAKEVDLYSTNQDCVKMLVGN  128 (211)
Q Consensus        62 ~~~~l~D~~g~~~~~~~-------~~~~-----~~~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~~p~viv~n  128 (211)
                      ..+.|+||+|...++..       ....     ....+-.++|+|++.. +....+.. +...+.        +--+++|
T Consensus        89 ~d~ilIDTaGr~~~d~~l~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~-~~~~~~--------~~~lI~T  159 (207)
T d1okkd2          89 YDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQAKK-FHEAVG--------LTGVIVT  159 (207)
T ss_dssp             CSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHHHHHHH-HHHHHC--------CSEEEEE
T ss_pred             CCEEEcCccccchhhHHHHHHHHHHHHHhhhcccCCCceEEEEeecccCchHHHHHHH-hhhccC--------CceEEEe
Confidence            46899999994333211       1111     1345788999998864 33444443 333332        2267899


Q ss_pred             cCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHH
Q 028300          129 KVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQ  167 (211)
Q Consensus       129 K~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~  167 (211)
                      |.|....-    -.+.......+.|+..++.  |++.++
T Consensus       160 KlDet~~~----G~~l~~~~~~~~Pi~~i~~--Gq~p~D  192 (207)
T d1okkd2         160 KLDGTAKG----GVLIPIVRTLKVPIKFVGV--GEGPDD  192 (207)
T ss_dssp             CTTSSCCC----TTHHHHHHHHCCCEEEEEC--SSSTTC
T ss_pred             ccCCCCCc----cHHHHHHHHHCCCEEEEeC--CCChHh
Confidence            99964321    1234556677888766653  444443

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.15  E-value=1.2e-05  Score=56.64  Aligned_cols=22  Identities=36%  Similarity=0.564  Sum_probs=19.3

Q ss_pred             EEEEcCCCCcHHHHHHHHhhCC
Q 028300           17 ILLIGDSGVGKSSLLVSFISSS   38 (211)
Q Consensus        17 I~v~G~~~~GKssli~~l~~~~   38 (211)
                      .+|.|.-|||||||+++++...
T Consensus         6 ~iitGFLGaGKTTll~~lL~~~   27 (222)
T d1nija1           6 TLLTGFLGAGKTTLLRHILNEQ   27 (222)
T ss_dssp             EEEEESSSSSCHHHHHHHHHSC
T ss_pred             EEEeeCCCCCHHHHHHHHHhcC
Confidence            5788999999999999998753

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.14  E-value=3.3e-07  Score=64.75  Aligned_cols=57  Identities=28%  Similarity=0.357  Sum_probs=32.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCCCCC---CCCc--c--ceeeEEEEEEECCEEEEEEEEeCCChhhhc
Q 028300           16 KILLIGDSGVGKSSLLVSFISSSVDD---LSPT--I--GVDFKIKLLTVAGKRLKLTIWDTAGQERFR   76 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~~~~~---~~~~--~--~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~   76 (211)
                      ..+++|++|||||||+|+|.....-.   ....  .  .++.....+..++ +   .++||||..++.
T Consensus        99 ~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs~~~~rGrHTTt~~~l~~~~g-g---~iiDTPG~r~~~  162 (231)
T d1t9ha2          99 TTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIHTSG-G---LVADTPGFSSLE  162 (231)
T ss_dssp             EEEEEESHHHHHHHHHHHHCC-------------------CCCCCEEEETT-E---EEESSCSCSSCC
T ss_pred             eEEEECCCCccHHHHHHhhccHhHhhhcccccccCCCceeeeeEEEEecCC-C---EEEECCcccccc
Confidence            45799999999999999998764311   1111  1  1333323334443 2   477999976654

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=98.13  E-value=2.9e-06  Score=59.09  Aligned_cols=84  Identities=20%  Similarity=0.253  Sum_probs=48.7

Q ss_pred             EEEEEEeCCChhhhccc----hhh--hccCCcEEEEEEECCChhh-HHHHHHHHHHHhhhhccCCCccEEEEeecCCCCC
Q 028300           62 LKLTIWDTAGQERFRTL----TSS--YYRGAQGIILVYDVTRRET-FTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDS  134 (211)
Q Consensus        62 ~~~~l~D~~g~~~~~~~----~~~--~~~~~d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~  134 (211)
                      ..+.|+||+|....+..    +..  ...+.+-+++|.|+...+. ...+.. +...+.        +--+++||.|...
T Consensus        93 ~d~vlIDTaGr~~~d~~~~~el~~~~~~~~~~~~llv~~a~~~~~~~~~~~~-f~~~~~--------~~~~I~TKlDe~~  163 (207)
T d1ls1a2          93 RDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARA-FDEKVG--------VTGLVLTKLDGDA  163 (207)
T ss_dssp             CCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHHHHHHHHH-HHHHTC--------CCEEEEECGGGCS
T ss_pred             CcceeecccccchhhhhhHHHHHHHHhhcCCceEEEEeccccchhHHHHHHH-HHhhCC--------CCeeEEeecCccc
Confidence            46889999994333211    111  1235688999999876543 332222 333222        2258899999532


Q ss_pred             CcccCHHHHHHHHHHcCCeEEEee
Q 028300          135 ERVVSREEGIALAKEHGSLFLECS  158 (211)
Q Consensus       135 ~~~v~~~~~~~~~~~~~~~~~~~S  158 (211)
                          ..-.+.......+.|+..++
T Consensus       164 ----~~G~~l~~~~~~~~Pi~~i~  183 (207)
T d1ls1a2         164 ----RGGAALSARHVTGKPIYFAG  183 (207)
T ss_dssp             ----SCHHHHHHHHHHCCCEEEEC
T ss_pred             ----cchHHHHHHHHHCCCEEEEe
Confidence                22334566677888876664

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.86  E-value=4.1e-06  Score=56.74  Aligned_cols=23  Identities=35%  Similarity=0.791  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhhC
Q 028300           15 FKILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        15 ~~I~v~G~~~~GKssli~~l~~~   37 (211)
                      .||+++|++|+|||||++.+++.
T Consensus         1 ~ki~I~G~~G~GKSTLl~~i~~~   23 (178)
T d1ye8a1           1 MKIIITGEPGVGKTTLVKKIVER   23 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCcHHHHHHHHHHhc
Confidence            38999999999999999999863

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.84  E-value=4.3e-06  Score=56.85  Aligned_cols=23  Identities=22%  Similarity=0.387  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhhC
Q 028300           15 FKILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        15 ~~I~v~G~~~~GKssli~~l~~~   37 (211)
                      =+|+|.|++|||||||+++|...
T Consensus         8 K~I~i~G~~GsGKTTla~~La~~   30 (192)
T d1lw7a2           8 KTVAILGGESSGKSVLVNKLAAV   30 (192)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            37999999999999999999854

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=97.76  E-value=7.7e-06  Score=55.02  Aligned_cols=27  Identities=26%  Similarity=0.431  Sum_probs=23.6

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHhhC
Q 028300           11 YDLSFKILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        11 ~~~~~~I~v~G~~~~GKssli~~l~~~   37 (211)
                      .++..+|++.|++||||||+.+.|...
T Consensus         2 ~pk~~~I~i~G~~GsGKTT~~~~La~~   28 (174)
T d1y63a_           2 QPKGINILITGTPGTGKTSMAEMIAAE   28 (174)
T ss_dssp             CCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCCCEEEEEeCCCCCHHHHHHHHHHH
Confidence            456789999999999999999999753

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.70  E-value=9.3e-06  Score=54.31  Aligned_cols=22  Identities=32%  Similarity=0.478  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q 028300           16 KILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~   37 (211)
                      -|+|+|++|||||||+++|...
T Consensus         4 vi~itG~~GSGKTTL~~~L~~~   25 (170)
T d1np6a_           4 LLAFAAWSGTGKTTLLKKLIPA   25 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            4899999999999999999853

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=97.68  E-value=8.6e-06  Score=54.61  Aligned_cols=22  Identities=45%  Similarity=0.602  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhh
Q 028300           15 FKILLIGDSGVGKSSLLVSFIS   36 (211)
Q Consensus        15 ~~I~v~G~~~~GKssli~~l~~   36 (211)
                      .+|+++|+|||||||+.+.|..
T Consensus         5 ~~I~i~G~pGsGKTTia~~La~   26 (173)
T d1rkba_           5 PNILLTGTPGVGKTTLGKELAS   26 (173)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999999864

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=97.68  E-value=1.2e-05  Score=55.19  Aligned_cols=24  Identities=21%  Similarity=0.423  Sum_probs=21.6

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhh
Q 028300           13 LSFKILLIGDSGVGKSSLLVSFIS   36 (211)
Q Consensus        13 ~~~~I~v~G~~~~GKssli~~l~~   36 (211)
                      +.+||+++|+|||||||+...|..
T Consensus         2 ~~~riil~G~pGSGKsT~a~~La~   25 (190)
T d1ak2a1           2 KGVRAVLLGPPGAGKGTQAPKLAK   25 (190)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHHH
Confidence            467999999999999999998874

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=97.61  E-value=1.2e-05  Score=55.11  Aligned_cols=25  Identities=16%  Similarity=0.266  Sum_probs=21.7

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhhC
Q 028300           13 LSFKILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        13 ~~~~I~v~G~~~~GKssli~~l~~~   37 (211)
                      ++.+|+|+|+|||||||+.+.|...
T Consensus         2 ~Pm~I~i~GppGsGKsT~a~~La~~   26 (189)
T d1zaka1           2 DPLKVMISGAPASGKGTQCELIKTK   26 (189)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            4678999999999999999988643

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=97.60  E-value=2.2e-05  Score=53.88  Aligned_cols=26  Identities=15%  Similarity=0.358  Sum_probs=22.2

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHhh
Q 028300           11 YDLSFKILLIGDSGVGKSSLLVSFIS   36 (211)
Q Consensus        11 ~~~~~~I~v~G~~~~GKssli~~l~~   36 (211)
                      ..++..|+|+|+|||||||+.+.|..
T Consensus         3 ~~kp~iI~i~G~pGSGKsT~a~~La~   28 (194)
T d1qf9a_           3 KSKPNVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             CCCCEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHH
Confidence            34567889999999999999999874

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=97.58  E-value=2.4e-05  Score=53.67  Aligned_cols=27  Identities=15%  Similarity=0.302  Sum_probs=23.4

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHhhC
Q 028300           11 YDLSFKILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        11 ~~~~~~I~v~G~~~~GKssli~~l~~~   37 (211)
                      ..+-.||+|+|+|||||||+...|...
T Consensus         3 ~~r~mrIiliG~PGSGKtT~a~~La~~   29 (189)
T d2ak3a1           3 SARLLRAAIMGAPGSGKGTVSSRITKH   29 (189)
T ss_dssp             SSCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCcceeEEEECCCCCCHHHHHHHHHHH
Confidence            345679999999999999999999854

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.57  E-value=1.9e-05  Score=51.86  Aligned_cols=21  Identities=48%  Similarity=0.669  Sum_probs=18.8

Q ss_pred             EEEEcCCCCcHHHHHHHHhhC
Q 028300           17 ILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        17 I~v~G~~~~GKssli~~l~~~   37 (211)
                      |++.|+||||||||+++|...
T Consensus         5 Iii~G~pGsGKTTla~~L~~~   25 (152)
T d1ly1a_           5 ILTIGCPGSGKSTWAREFIAK   25 (152)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            788999999999999998754

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.55  E-value=2.2e-05  Score=53.25  Aligned_cols=22  Identities=23%  Similarity=0.531  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q 028300           16 KILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~   37 (211)
                      ||+|+|+|||||||+.+.|...
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~   23 (182)
T d1zina1           2 NLVLMGLPGAGKGTQAEKIVAA   23 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            7999999999999999988643

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.52  E-value=2.5e-05  Score=53.05  Aligned_cols=24  Identities=29%  Similarity=0.547  Sum_probs=21.4

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhhC
Q 028300           14 SFKILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        14 ~~~I~v~G~~~~GKssli~~l~~~   37 (211)
                      +.||+|+|+|||||||+.+.|...
T Consensus         2 ~mrIvl~G~pGSGKtT~a~~La~~   25 (180)
T d1akya1           2 SIRMVLIGPPGAGKGTQAPNLQER   25 (180)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHH
Confidence            578999999999999999998743

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.49  E-value=3.1e-05  Score=52.54  Aligned_cols=23  Identities=30%  Similarity=0.654  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhhC
Q 028300           15 FKILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        15 ~~I~v~G~~~~GKssli~~l~~~   37 (211)
                      .||+|+|+|||||||+.+.|...
T Consensus         1 m~I~i~G~pGsGKsT~a~~La~~   23 (181)
T d2cdna1           1 MRVLLLGPPGAGKGTQAVKLAEK   23 (181)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            38999999999999999998744

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=97.48  E-value=3.1e-05  Score=52.62  Aligned_cols=22  Identities=27%  Similarity=0.501  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q 028300           16 KILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~   37 (211)
                      +|+|+|+|||||||+...|...
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~   23 (182)
T d1s3ga1           2 NIVLMGLPGAGKGTQADRIVEK   23 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            7999999999999999988754

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.46  E-value=3.2e-05  Score=51.66  Aligned_cols=20  Identities=20%  Similarity=0.478  Sum_probs=18.1

Q ss_pred             EEEEcCCCCcHHHHHHHHhh
Q 028300           17 ILLIGDSGVGKSSLLVSFIS   36 (211)
Q Consensus        17 I~v~G~~~~GKssli~~l~~   36 (211)
                      |+|+|.+|||||||+++|..
T Consensus         4 i~I~G~~gSGKTTli~~l~~   23 (165)
T d1xjca_           4 WQVVGYKHSGKTTLMEKWVA   23 (165)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHH
Confidence            57999999999999999874

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=97.46  E-value=3e-05  Score=51.76  Aligned_cols=22  Identities=27%  Similarity=0.463  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q 028300           16 KILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~   37 (211)
                      -|++.|++||||||+.+.|...
T Consensus         4 lI~i~G~~GsGKTTva~~L~~~   25 (176)
T d2bdta1           4 LYIITGPAGVGKSTTCKRLAAQ   25 (176)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4889999999999999999854

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.46  E-value=6.3e-05  Score=54.62  Aligned_cols=60  Identities=20%  Similarity=0.111  Sum_probs=40.8

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhhCCC--CC----CCCccceeeEEEEEEECCEEEEEEEEeCCChh
Q 028300           13 LSFKILLIGDSGVGKSSLLVSFISSSV--DD----LSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQE   73 (211)
Q Consensus        13 ~~~~I~v~G~~~~GKssli~~l~~~~~--~~----~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~   73 (211)
                      .-.-|.|+|+.++|||+|+|.|++..+  ..    ...|.|.......+. .+....+.++||.|..
T Consensus        31 ~v~vvsi~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~Giw~~~~~~~-~~~~~~~~~lDteG~~   96 (277)
T d1f5na2          31 PMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHP-KKPGHILVLLDTEGLG   96 (277)
T ss_dssp             BEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECS-SSTTCEEEEEEECCBC
T ss_pred             CEEEEEEECCCCCCHHHHHHHHcCCCCCCccCCCCCCCCCceEEEEeecc-CCCCceEEEEeccccc
Confidence            345789999999999999999998764  21    224455544333221 3345578899999954

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.44  E-value=4.2e-05  Score=52.40  Aligned_cols=23  Identities=17%  Similarity=0.537  Sum_probs=20.6

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhh
Q 028300           14 SFKILLIGDSGVGKSSLLVSFIS   36 (211)
Q Consensus        14 ~~~I~v~G~~~~GKssli~~l~~   36 (211)
                      +..|+|+|+|||||||....|..
T Consensus         1 p~iI~i~GppGSGKsT~a~~La~   23 (194)
T d1teva_           1 PLVVFVLGGPGAGKGTQCARIVE   23 (194)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999998864

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.43  E-value=3.8e-05  Score=51.96  Aligned_cols=21  Identities=24%  Similarity=0.447  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhh
Q 028300           16 KILLIGDSGVGKSSLLVSFIS   36 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~   36 (211)
                      ||+|+|+|||||||..+.|..
T Consensus         2 ~I~i~G~pGSGKsT~~~~La~   22 (179)
T d1e4va1           2 RIILLGAPVAGKGTQAQFIME   22 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            799999999999999998863

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.42  E-value=5.8e-05  Score=50.85  Aligned_cols=28  Identities=18%  Similarity=0.226  Sum_probs=23.6

Q ss_pred             CCCceeeEEEEEcCCCCcHHHHHHHHhh
Q 028300            9 NSYDLSFKILLIGDSGVGKSSLLVSFIS   36 (211)
Q Consensus         9 ~~~~~~~~I~v~G~~~~GKssli~~l~~   36 (211)
                      ...+.+.-|+++|.||||||||++++..
T Consensus         9 ~~~~~p~liil~G~pGsGKST~a~~l~~   36 (172)
T d1yj5a2           9 LLSPNPEVVVAVGFPGAGKSTFIQEHLV   36 (172)
T ss_dssp             SSCSSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred             cCCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            3446677899999999999999999864

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.35  E-value=1.9e-05  Score=53.69  Aligned_cols=21  Identities=29%  Similarity=0.699  Sum_probs=19.3

Q ss_pred             EEEEcCCCCcHHHHHHHHhhC
Q 028300           17 ILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        17 I~v~G~~~~GKssli~~l~~~   37 (211)
                      |+++||+||||+||+++|+..
T Consensus         6 ivl~Gpsg~GK~tl~~~L~~~   26 (178)
T d1kgda_           6 LVLLGAHGVGRRHIKNTLITK   26 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            889999999999999999854

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=97.32  E-value=6e-05  Score=49.71  Aligned_cols=22  Identities=32%  Similarity=0.558  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q 028300           16 KILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~   37 (211)
                      .|+++|++||||||+.+.|...
T Consensus         4 ~I~l~G~~GsGKSTvak~La~~   25 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQQ   25 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999998754

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.30  E-value=7.4e-05  Score=51.63  Aligned_cols=23  Identities=17%  Similarity=0.277  Sum_probs=20.1

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhh
Q 028300           14 SFKILLIGDSGVGKSSLLVSFIS   36 (211)
Q Consensus        14 ~~~I~v~G~~~~GKssli~~l~~   36 (211)
                      +.-|+++|.|||||||+.++|..
T Consensus         2 p~li~l~GlpgsGKSTla~~L~~   24 (213)
T d1bifa1           2 PTLIVMVGLPARGKTYISKKLTR   24 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            34589999999999999999984

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.28  E-value=6.9e-05  Score=50.45  Aligned_cols=22  Identities=32%  Similarity=0.579  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q 028300           16 KILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~   37 (211)
                      .|.+.|++|+|||||+..+...
T Consensus         3 ~v~ItG~~GtGKTtl~~~i~~~   24 (189)
T d2i3ba1           3 HVFLTGPPGVGKTTLIHKASEV   24 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHH
Confidence            4889999999999999998743

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.28  E-value=9.7e-05  Score=50.36  Aligned_cols=25  Identities=20%  Similarity=0.130  Sum_probs=21.9

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhh
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFIS   36 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~~   36 (211)
                      ..++-|+|-|++|||||||.+.|..
T Consensus        20 ~~~~iIgI~G~~GSGKSTla~~L~~   44 (198)
T d1rz3a_          20 AGRLVLGIDGLSRSGKTTLANQLSQ   44 (198)
T ss_dssp             SSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            3577899999999999999999864

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.26  E-value=7.6e-05  Score=50.87  Aligned_cols=21  Identities=43%  Similarity=0.725  Sum_probs=19.2

Q ss_pred             EEEEcCCCCcHHHHHHHHhhC
Q 028300           17 ILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        17 I~v~G~~~~GKssli~~l~~~   37 (211)
                      |+|+||+|||||||+++|+..
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~   24 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            789999999999999999754

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=97.23  E-value=8.3e-05  Score=50.17  Aligned_cols=19  Identities=21%  Similarity=0.392  Sum_probs=17.5

Q ss_pred             EEEEcCCCCcHHHHHHHHh
Q 028300           17 ILLIGDSGVGKSSLLVSFI   35 (211)
Q Consensus        17 I~v~G~~~~GKssli~~l~   35 (211)
                      |+|.|++||||||+++.|.
T Consensus         4 I~i~G~~GsGKsT~~~~L~   22 (190)
T d1khta_           4 VVVTGVPGVGSTTSSQLAM   22 (190)
T ss_dssp             EEEECCTTSCHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            7888999999999999885

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.21  E-value=6.9e-05  Score=49.97  Aligned_cols=22  Identities=32%  Similarity=0.412  Sum_probs=19.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhh
Q 028300           15 FKILLIGDSGVGKSSLLVSFIS   36 (211)
Q Consensus        15 ~~I~v~G~~~~GKssli~~l~~   36 (211)
                      .||+++|++||||||+.+.|..
T Consensus         2 p~IvliG~~G~GKSTig~~La~   23 (165)
T d2iyva1           2 PKAVLVGLPGSGKSTIGRRLAK   23 (165)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999988863

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=97.20  E-value=9.5e-05  Score=52.47  Aligned_cols=22  Identities=36%  Similarity=0.401  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q 028300           16 KILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~   37 (211)
                      +|+|+|++|||||||++.+.+-
T Consensus        31 ~vaIvG~sGsGKSTLl~ll~gl   52 (241)
T d2pmka1          31 VIGIVGRSGSGKSTLTKLIQRF   52 (241)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHHhc
Confidence            7999999999999999988865

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=97.19  E-value=8.8e-05  Score=49.29  Aligned_cols=21  Identities=38%  Similarity=0.566  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhh
Q 028300           16 KILLIGDSGVGKSSLLVSFIS   36 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~   36 (211)
                      +|+++|++||||||+.+.|..
T Consensus         2 ~I~liG~~GsGKsTi~k~La~   22 (161)
T d1viaa_           2 NIVFIGFMGSGKSTLARALAK   22 (161)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            489999999999999998863

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.18  E-value=0.0001  Score=49.98  Aligned_cols=21  Identities=33%  Similarity=0.539  Sum_probs=18.9

Q ss_pred             EEEEcCCCCcHHHHHHHHhhC
Q 028300           17 ILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        17 I~v~G~~~~GKssli~~l~~~   37 (211)
                      |+++||+|||||||++.|...
T Consensus         5 ivl~GpsG~GK~tl~~~L~~~   25 (182)
T d1znwa1           5 VVLSGPSAVGKSTVVRCLRER   25 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHhh
Confidence            679999999999999999754

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.18  E-value=0.00013  Score=52.47  Aligned_cols=29  Identities=28%  Similarity=0.412  Sum_probs=23.3

Q ss_pred             CCceeeEEEEEcCCCCcHHHHHHHHhhCC
Q 028300           10 SYDLSFKILLIGDSGVGKSSLLVSFISSS   38 (211)
Q Consensus        10 ~~~~~~~I~v~G~~~~GKssli~~l~~~~   38 (211)
                      ....+.-|++.|+||+|||||++.+....
T Consensus        28 ~~~~P~~ilL~GpPGtGKT~la~~la~~~   56 (273)
T d1gvnb_          28 AVESPTAFLLGGQPGSGKTSLRSAIFEET   56 (273)
T ss_dssp             CCSSCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence            33445569999999999999999997643

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.17  E-value=0.00015  Score=48.45  Aligned_cols=25  Identities=24%  Similarity=0.379  Sum_probs=21.0

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhh
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFIS   36 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~~   36 (211)
                      ..-+.|.++|.+||||||+.+.|..
T Consensus         4 ~~g~~I~l~G~~GsGKTTia~~La~   28 (183)
T d1m8pa3           4 TQGFTIFLTGYMNSGKDAIARALQV   28 (183)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3447789999999999999988864

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.16  E-value=0.00011  Score=48.96  Aligned_cols=22  Identities=32%  Similarity=0.443  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q 028300           16 KILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~   37 (211)
                      -|+++|++||||||+.+.|...
T Consensus         8 iivl~G~~GsGKsT~a~~La~~   29 (171)
T d1knqa_           8 IYVLMGVSGSGKSAVASEVAHQ   29 (171)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4567899999999999998753

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.15  E-value=0.00017  Score=49.38  Aligned_cols=24  Identities=21%  Similarity=0.437  Sum_probs=20.4

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhhC
Q 028300           14 SFKILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        14 ~~~I~v~G~~~~GKssli~~l~~~   37 (211)
                      .-.|+|+|+|||||||+...|...
T Consensus         8 ~~iI~i~GppGSGKsT~a~~La~~   31 (196)
T d1ukza_           8 VSVIFVLGGPGAGKGTQCEKLVKD   31 (196)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHH
Confidence            345889999999999999999753

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=97.14  E-value=0.00011  Score=50.66  Aligned_cols=23  Identities=26%  Similarity=0.465  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCC
Q 028300           16 KILLIGDSGVGKSSLLVSFISSS   38 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~~   38 (211)
                      .++++|+.|+|||||++.+++..
T Consensus        29 i~~l~G~NGsGKSTLl~~i~gl~   51 (200)
T d1sgwa_          29 VVNFHGPNGIGKTTLLKTISTYL   51 (200)
T ss_dssp             CEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCChHHHHHHHHhccc
Confidence            57899999999999999998653

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.14  E-value=0.00013  Score=48.81  Aligned_cols=21  Identities=33%  Similarity=0.577  Sum_probs=18.5

Q ss_pred             EEEEcCCCCcHHHHHHHHhhC
Q 028300           17 ILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        17 I~v~G~~~~GKssli~~l~~~   37 (211)
                      |++.|++||||||+.+.|...
T Consensus         7 I~l~G~~GsGKSTia~~La~~   27 (176)
T d1zp6a1           7 LLLSGHPGSGKSTIAEALANL   27 (176)
T ss_dssp             EEEEECTTSCHHHHHHHHHTC
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            778899999999999988754

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.12  E-value=0.00012  Score=49.95  Aligned_cols=21  Identities=43%  Similarity=0.718  Sum_probs=18.8

Q ss_pred             EEEEcCCCCcHHHHHHHHhhC
Q 028300           17 ILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        17 I~v~G~~~~GKssli~~l~~~   37 (211)
                      |+|+||+|||||||+++|...
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~~   23 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQE   23 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            789999999999999998643

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=97.11  E-value=0.00013  Score=48.66  Aligned_cols=21  Identities=38%  Similarity=0.537  Sum_probs=18.1

Q ss_pred             EEEEcCCCCcHHHHHHHHhhC
Q 028300           17 ILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        17 I~v~G~~~~GKssli~~l~~~   37 (211)
                      |+|.|++||||||+.+.|...
T Consensus         6 I~l~G~~GsGKsTva~~L~~~   26 (178)
T d1qhxa_           6 IILNGGSSAGKSGIVRCLQSV   26 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            566699999999999998864

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=97.11  E-value=0.00014  Score=51.71  Aligned_cols=22  Identities=32%  Similarity=0.377  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q 028300           16 KILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~   37 (211)
                      .++++|+.|||||||++-+.+-
T Consensus        30 ~vaivG~sGsGKSTLl~ll~gl   51 (242)
T d1mv5a_          30 IIAFAGPSGGGKSTIFSLLERF   51 (242)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHHHh
Confidence            7899999999999999988754

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.10  E-value=0.00013  Score=49.97  Aligned_cols=23  Identities=22%  Similarity=0.427  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhhC
Q 028300           15 FKILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        15 ~~I~v~G~~~~GKssli~~l~~~   37 (211)
                      -.|+|+|+|||||||+...|...
T Consensus         9 ~iI~l~G~pGSGKsT~a~~La~~   31 (194)
T d3adka_           9 KIIFVVGGPGSGKGTQCEKIVQK   31 (194)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            34889999999999999999753

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.09  E-value=0.00014  Score=52.06  Aligned_cols=22  Identities=32%  Similarity=0.495  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q 028300           16 KILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~   37 (211)
                      +++|+|++|||||||++.+.+-
T Consensus        43 ~iaivG~sGsGKSTLl~ll~gl   64 (253)
T d3b60a1          43 TVALVGRSGSGKSTIASLITRF   64 (253)
T ss_dssp             EEEEEECTTSSHHHHHHHHTTT
T ss_pred             EEEEECCCCChHHHHHHHHhcc
Confidence            7999999999999999988764

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=97.09  E-value=0.00014  Score=50.68  Aligned_cols=24  Identities=21%  Similarity=0.293  Sum_probs=21.3

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhh
Q 028300           13 LSFKILLIGDSGVGKSSLLVSFIS   36 (211)
Q Consensus        13 ~~~~I~v~G~~~~GKssli~~l~~   36 (211)
                      +.++|+|-|||||||||....|..
T Consensus         2 k~i~IaIdGp~GsGKgT~ak~La~   25 (223)
T d1q3ta_           2 KTIQIAIDGPASSGKSTVAKIIAK   25 (223)
T ss_dssp             CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999998874

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.08  E-value=0.00014  Score=51.09  Aligned_cols=23  Identities=35%  Similarity=0.554  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCC
Q 028300           16 KILLIGDSGVGKSSLLVSFISSS   38 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~~   38 (211)
                      .++++|+.|||||||++.+.+-.
T Consensus        28 i~~liGpsGsGKSTLl~~i~Gl~   50 (232)
T d2awna2          28 FVVFVGPSGCGKSTLLRMIAGLE   50 (232)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHhcCC
Confidence            57999999999999999887553

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.08  E-value=0.00017  Score=50.08  Aligned_cols=23  Identities=30%  Similarity=0.459  Sum_probs=20.7

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhh
Q 028300           14 SFKILLIGDSGVGKSSLLVSFIS   36 (211)
Q Consensus        14 ~~~I~v~G~~~~GKssli~~l~~   36 (211)
                      ++-|+|.|++|||||||.+.|..
T Consensus         2 P~iIgI~G~~gSGKSTla~~L~~   24 (213)
T d1uj2a_           2 PFLIGVSGGTASGKSSVCAKIVQ   24 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            67899999999999999998854

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=97.07  E-value=0.00044  Score=45.43  Aligned_cols=26  Identities=27%  Similarity=0.461  Sum_probs=21.8

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhhCC
Q 028300           13 LSFKILLIGDSGVGKSSLLVSFISSS   38 (211)
Q Consensus        13 ~~~~I~v~G~~~~GKssli~~l~~~~   38 (211)
                      ...-|++-|+-|||||||++.++..-
T Consensus        32 ~g~ii~L~G~LGaGKTtfvr~~~~~l   57 (158)
T d1htwa_          32 KAIMVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CCeEEEEecCCCccHHHHHHHHHhhc
Confidence            34568889999999999999998654

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.05  E-value=0.00015  Score=51.00  Aligned_cols=22  Identities=32%  Similarity=0.418  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q 028300           16 KILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~   37 (211)
                      .++++|++|||||||++.+.+-
T Consensus        33 ~~~iiG~sGsGKSTLl~~i~gl   54 (230)
T d1l2ta_          33 FVSIMGPSGSGKSTMLNIIGCL   54 (230)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCcchhhHhccCC
Confidence            5799999999999999977765

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.04  E-value=0.00017  Score=51.53  Aligned_cols=22  Identities=27%  Similarity=0.410  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q 028300           16 KILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~   37 (211)
                      .++++|+.|||||||++.+.+-
T Consensus        42 ~vaivG~sGsGKSTLl~li~gl   63 (251)
T d1jj7a_          42 VTALVGPNGSGKSTVAALLQNL   63 (251)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhcc
Confidence            7899999999999999988765

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.04  E-value=0.00017  Score=49.94  Aligned_cols=22  Identities=32%  Similarity=0.542  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q 028300           16 KILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~   37 (211)
                      -|+|+||+|||||||+++|+..
T Consensus         4 livi~GPSG~GK~tl~~~L~~~   25 (205)
T d1s96a_           4 LYIVSAPSGAGKSSLIQALLKT   25 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            3789999999999999999864

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.04  E-value=0.00017  Score=50.91  Aligned_cols=23  Identities=30%  Similarity=0.440  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCC
Q 028300           16 KILLIGDSGVGKSSLLVSFISSS   38 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~~   38 (211)
                      -++++|+.|||||||++.+.+-.
T Consensus        26 ~~~liGpnGaGKSTll~~i~Gl~   48 (240)
T d2onka1          26 YCVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHHcCC
Confidence            35799999999999999998753

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.03  E-value=0.00017  Score=52.36  Aligned_cols=23  Identities=30%  Similarity=0.579  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCC
Q 028300           16 KILLIGDSGVGKSSLLVSFISSS   38 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~~   38 (211)
                      .|+|+|+.|+|||||++.+.+..
T Consensus        64 ~vaivG~nGsGKSTLl~~i~Gl~   86 (281)
T d1r0wa_          64 MLAITGSTGSGKTSLLMLILGEL   86 (281)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHhCCC
Confidence            68999999999999999988643

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.01  E-value=0.00019  Score=50.71  Aligned_cols=23  Identities=30%  Similarity=0.488  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCC
Q 028300           16 KILLIGDSGVGKSSLLVSFISSS   38 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~~   38 (211)
                      .++++|+.|+|||||++.+.+-.
T Consensus        34 ~~~liGpsGaGKSTLl~~i~Gl~   56 (239)
T d1v43a3          34 FLVLLGPSGCGKTTTLRMIAGLE   56 (239)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHHcCC
Confidence            57999999999999999888654

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=96.99  E-value=0.0002  Score=47.82  Aligned_cols=20  Identities=20%  Similarity=0.491  Sum_probs=18.0

Q ss_pred             EEEEcCCCCcHHHHHHHHhh
Q 028300           17 ILLIGDSGVGKSSLLVSFIS   36 (211)
Q Consensus        17 I~v~G~~~~GKssli~~l~~   36 (211)
                      |+++|++||||||+.+.|..
T Consensus         5 Iil~G~~GsGKSTia~~LA~   24 (170)
T d1e6ca_           5 IFMVGARGCGMTTVGRELAR   24 (170)
T ss_dssp             EEEESCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78899999999999998863

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=96.98  E-value=0.00016  Score=50.79  Aligned_cols=23  Identities=22%  Similarity=0.424  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCC
Q 028300           16 KILLIGDSGVGKSSLLVSFISSS   38 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~~   38 (211)
                      -++++|+.|||||||++.+.+-.
T Consensus        28 ~~~liGpsGaGKSTll~~l~Gl~   50 (229)
T d3d31a2          28 YFVILGPTGAGKTLFLELIAGFH   50 (229)
T ss_dssp             EEEEECCCTHHHHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCc
Confidence            47999999999999999998764

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.96  E-value=0.00014  Score=49.40  Aligned_cols=25  Identities=24%  Similarity=0.369  Sum_probs=20.9

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhhC
Q 028300           13 LSFKILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        13 ~~~~I~v~G~~~~GKssli~~l~~~   37 (211)
                      +-..|.+.|+|||||||+.+.|...
T Consensus        18 ~g~vI~L~G~pGSGKTTiAk~La~~   42 (195)
T d1x6va3          18 RGCTVWLTGLSGAGKTTVSMALEEY   42 (195)
T ss_dssp             CCEEEEEESSCHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            3456889999999999999998643

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=96.93  E-value=0.00021  Score=50.54  Aligned_cols=22  Identities=36%  Similarity=0.385  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q 028300           16 KILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~   37 (211)
                      .++++|++|||||||++.+.+-
T Consensus        33 ~~~iiG~sGsGKSTLl~~i~Gl   54 (240)
T d3dhwc1          33 IYGVIGASGAGKSTLIRCVNLL   54 (240)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHcCC
Confidence            5799999999999999988765

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=96.93  E-value=0.00023  Score=50.21  Aligned_cols=24  Identities=29%  Similarity=0.472  Sum_probs=20.7

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhhC
Q 028300           14 SFKILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        14 ~~~I~v~G~~~~GKssli~~l~~~   37 (211)
                      .-.+++.||||+||||+++.+.+.
T Consensus        35 ~~~~Ll~GPpG~GKTtla~~la~~   58 (239)
T d1ixsb2          35 LEHLLLFGPPGLGKTTLAHVIAHE   58 (239)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH
Confidence            346899999999999999998854

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=96.92  E-value=0.00022  Score=50.51  Aligned_cols=23  Identities=30%  Similarity=0.504  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCC
Q 028300           16 KILLIGDSGVGKSSLLVSFISSS   38 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~~   38 (211)
                      -++++|+.|+|||||++.+.+-.
T Consensus        34 i~~liGpnGaGKSTl~~~i~Gl~   56 (240)
T d1ji0a_          34 IVTLIGANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            57999999999999999998763

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=96.92  E-value=0.00024  Score=50.19  Aligned_cols=23  Identities=30%  Similarity=0.498  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCC
Q 028300           16 KILLIGDSGVGKSSLLVSFISSS   38 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~~   38 (211)
                      .++++|+.|+|||||++.+.+-.
T Consensus        31 ~~~liG~sGaGKSTll~~i~gl~   53 (240)
T d1g2912          31 FMILLGPSGCGKTTTLRMIAGLE   53 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHhcCC
Confidence            58999999999999999888654

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=96.90  E-value=0.00017  Score=50.81  Aligned_cols=22  Identities=36%  Similarity=0.616  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q 028300           16 KILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~   37 (211)
                      -++++|+.|+|||||++.+.+-
T Consensus        27 i~~iiG~nGaGKSTLl~~l~Gl   48 (231)
T d1l7vc_          27 ILHLVGPNGAGKSTLLARMAGM   48 (231)
T ss_dssp             EEECBCCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            4799999999999999999874

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.89  E-value=0.00033  Score=47.82  Aligned_cols=29  Identities=28%  Similarity=0.444  Sum_probs=24.6

Q ss_pred             CCCceeeEEEEEcCCCCcHHHHHHHHhhC
Q 028300            9 NSYDLSFKILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus         9 ~~~~~~~~I~v~G~~~~GKssli~~l~~~   37 (211)
                      ....+++-|+|-|..||||||+++.|...
T Consensus         4 ~~~~kp~~I~ieG~~GsGKTTl~~~L~~~   32 (197)
T d2vp4a1           4 AEGTQPFTVLIEGNIGSGKTTYLNHFEKY   32 (197)
T ss_dssp             TTTCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             cCCCCceEEEEECCCCCCHHHHHHHHHHH
Confidence            44567789999999999999999988753

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=96.88  E-value=0.00027  Score=47.75  Aligned_cols=19  Identities=37%  Similarity=0.531  Sum_probs=16.5

Q ss_pred             EEEEcCCCCcHHHHHHHHh
Q 028300           17 ILLIGDSGVGKSSLLVSFI   35 (211)
Q Consensus        17 I~v~G~~~~GKssli~~l~   35 (211)
                      |+|.|.+||||||+++.|.
T Consensus         4 ivi~G~~GsGKTT~~~~La   22 (194)
T d1nksa_           4 GIVTGIPGVGKSTVLAKVK   22 (194)
T ss_dssp             EEEEECTTSCHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            3567999999999999885

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=96.86  E-value=0.00028  Score=49.76  Aligned_cols=22  Identities=36%  Similarity=0.607  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q 028300           16 KILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~   37 (211)
                      .+++.||||+||||+++.+...
T Consensus        37 ~~L~~GPpGtGKT~lA~~la~~   58 (238)
T d1in4a2          37 HVLLAGPPGLGKTTLAHIIASE   58 (238)
T ss_dssp             CEEEESSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHhc
Confidence            5899999999999999998754

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.85  E-value=0.00035  Score=47.61  Aligned_cols=24  Identities=29%  Similarity=0.549  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhhCC
Q 028300           15 FKILLIGDSGVGKSSLLVSFISSS   38 (211)
Q Consensus        15 ~~I~v~G~~~~GKssli~~l~~~~   38 (211)
                      -+++++|+||+|||+++..|...-
T Consensus        44 ~n~lLvG~pGVGKTalv~~LA~ri   67 (195)
T d1jbka_          44 NNPVLIGEPGVGKTAIVEGLAQRI   67 (195)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCeEEEecCCcccHHHHHHHHHHH
Confidence            478999999999999999887543

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=96.85  E-value=0.00029  Score=49.85  Aligned_cols=23  Identities=30%  Similarity=0.356  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCC
Q 028300           16 KILLIGDSGVGKSSLLVSFISSS   38 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~~   38 (211)
                      -++++|+.|+|||||++.+.+..
T Consensus        30 i~glvG~nGaGKSTLl~~l~G~~   52 (238)
T d1vpla_          30 IFGLIGPNGAGKTTTLRIISTLI   52 (238)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999888764

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=96.84  E-value=0.00018  Score=51.41  Aligned_cols=22  Identities=32%  Similarity=0.419  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q 028300           16 KILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~   37 (211)
                      +|+|+|++|||||||++.+.+-
T Consensus        46 ~vaivG~sGsGKSTLl~ll~gl   67 (255)
T d2hyda1          46 TVAFVGMSGGGKSTLINLIPRF   67 (255)
T ss_dssp             EEEEECSTTSSHHHHHTTTTTS
T ss_pred             EEEEECCCCCcHHHHHHHHHhc
Confidence            7899999999999999977654

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=96.83  E-value=0.00044  Score=46.95  Aligned_cols=25  Identities=28%  Similarity=0.300  Sum_probs=21.8

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhhC
Q 028300           13 LSFKILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        13 ~~~~I~v~G~~~~GKssli~~l~~~   37 (211)
                      .++-|+|.|.+||||||+.+.|...
T Consensus         2 ~p~IIgitG~~gSGKstva~~l~~~   26 (191)
T d1uf9a_           2 HPIIIGITGNIGSGKSTVAALLRSW   26 (191)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHC
Confidence            4678999999999999999988654

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=96.79  E-value=0.00022  Score=50.38  Aligned_cols=23  Identities=22%  Similarity=0.472  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCC
Q 028300           16 KILLIGDSGVGKSSLLVSFISSS   38 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~~   38 (211)
                      .++++|++|||||||++.+.+-.
T Consensus        33 ~~~iiG~sGsGKSTll~~i~gl~   55 (242)
T d1oxxk2          33 RFGILGPSGAGKTTFMRIIAGLD   55 (242)
T ss_dssp             EEEEECSCHHHHHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHHcCc
Confidence            68999999999999999988754

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.75  E-value=0.00037  Score=49.87  Aligned_cols=22  Identities=41%  Similarity=0.498  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q 028300           16 KILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~   37 (211)
                      .++++|+.|||||||++.+.+-
T Consensus        30 i~~iiG~sGsGKSTLl~~i~Gl   51 (258)
T d1b0ua_          30 VISIIGSSGSGKSTFLRCINFL   51 (258)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHHcC
Confidence            5899999999999999998865

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.73  E-value=0.00038  Score=49.73  Aligned_cols=23  Identities=35%  Similarity=0.492  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCC
Q 028300           16 KILLIGDSGVGKSSLLVSFISSS   38 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~~   38 (211)
                      -++++|+.|+|||||++.+.+..
T Consensus        32 i~~liG~nGaGKSTLl~~i~Gl~   54 (254)
T d1g6ha_          32 VTLIIGPNGSGKSTLINVITGFL   54 (254)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHHCCC
Confidence            47999999999999999998763

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.71  E-value=0.00049  Score=49.44  Aligned_cols=25  Identities=36%  Similarity=0.527  Sum_probs=21.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhhCCC
Q 028300           15 FKILLIGDSGVGKSSLLVSFISSSV   39 (211)
Q Consensus        15 ~~I~v~G~~~~GKssli~~l~~~~~   39 (211)
                      -+++++|+||+|||++++.|...-.
T Consensus        40 ~n~lLVG~~GvGKTalv~~la~ri~   64 (268)
T d1r6bx2          40 NNPLLVGESGVGKTAIAEGLAWRIV   64 (268)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CCcEEECCCCCcHHHHHHHHHHHHH
Confidence            4789999999999999999875443

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=96.67  E-value=0.00049  Score=49.39  Aligned_cols=22  Identities=27%  Similarity=0.329  Sum_probs=18.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q 028300           16 KILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~   37 (211)
                      .+.+.|+||+|||++++.+...
T Consensus        48 ~l~l~GppGtGKT~l~~~l~~~   69 (287)
T d1w5sa2          48 IYGSIGRVGIGKTTLAKFTVKR   69 (287)
T ss_dssp             EEECTTCCSSSHHHHHHHHHHH
T ss_pred             EEEeECCCCCCHHHHHHHHHHH
Confidence            3456699999999999998754

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.67  E-value=0.00084  Score=47.53  Aligned_cols=25  Identities=20%  Similarity=0.304  Sum_probs=21.6

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhhC
Q 028300           13 LSFKILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        13 ~~~~I~v~G~~~~GKssli~~l~~~   37 (211)
                      ..-.+++.||||+||||+++.++..
T Consensus        51 ~~~~lll~GPpG~GKTt~a~~la~~   75 (253)
T d1sxja2          51 VFRAAMLYGPPGIGKTTAAHLVAQE   75 (253)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHH
Confidence            3446899999999999999999865

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.67  E-value=0.00061  Score=48.40  Aligned_cols=24  Identities=25%  Similarity=0.368  Sum_probs=21.2

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhhC
Q 028300           14 SFKILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        14 ~~~I~v~G~~~~GKssli~~l~~~   37 (211)
                      ...|++.||||+|||+|++.+...
T Consensus        40 ~~~vLL~GppGtGKT~la~alA~~   63 (246)
T d1d2na_          40 LVSVLLEGPPHSGKTALAAKIAEE   63 (246)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECcCCCCHHHHHHHHhhc
Confidence            457999999999999999999854

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.65  E-value=0.00049  Score=50.64  Aligned_cols=23  Identities=35%  Similarity=0.577  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhhC
Q 028300           15 FKILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        15 ~~I~v~G~~~~GKssli~~l~~~   37 (211)
                      -.|+++||||+|||.|.+.+...
T Consensus        50 ~~iLl~GPpG~GKT~lAkalA~~   72 (309)
T d1ofha_          50 KNILMIGPTGVGKTEIARRLAKL   72 (309)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHhhc
Confidence            46899999999999999999864

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.64  E-value=0.00058  Score=47.82  Aligned_cols=22  Identities=27%  Similarity=0.597  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q 028300           16 KILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~   37 (211)
                      .+++.|++|+||||+++.+...
T Consensus        47 ~lll~Gp~G~GKTtla~~iak~   68 (231)
T d1iqpa2          47 HLLFAGPPGVGKTTAALALARE   68 (231)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHH
Confidence            5899999999999999988754

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=96.64  E-value=0.00053  Score=47.55  Aligned_cols=22  Identities=32%  Similarity=0.463  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q 028300           16 KILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~   37 (211)
                      -|+|.|||||||||+...|...
T Consensus         5 iI~I~GppGSGKgT~ak~La~~   26 (225)
T d1ckea_           5 VITIDGPSGAGKGTLCKAMAEA   26 (225)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5788899999999999988743

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=96.62  E-value=0.00074  Score=49.47  Aligned_cols=28  Identities=25%  Similarity=0.376  Sum_probs=23.1

Q ss_pred             CCCceeeEEEEEcCCCCcHHHHHHHHhh
Q 028300            9 NSYDLSFKILLIGDSGVGKSSLLVSFIS   36 (211)
Q Consensus         9 ~~~~~~~~I~v~G~~~~GKssli~~l~~   36 (211)
                      .....++-|+|.|++|||||||.+.|..
T Consensus        75 ~~~k~P~iIGIaG~sgSGKSTla~~L~~  102 (308)
T d1sq5a_          75 NGQRIPYIISIAGSVAVGKSTTARVLQA  102 (308)
T ss_dssp             C-CCCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred             cCCCCCEEEEEeCCCCCCCcHHHHHHHH
Confidence            4456789999999999999999888753

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=96.59  E-value=0.00048  Score=50.97  Aligned_cols=23  Identities=22%  Similarity=0.507  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhhC
Q 028300           15 FKILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        15 ~~I~v~G~~~~GKssli~~l~~~   37 (211)
                      -+|+|.|++|||||||++.|+..
T Consensus       167 ~nili~G~tgSGKTT~l~al~~~  189 (323)
T d1g6oa_         167 KNVIVCGGTGSGKTTYIKSIMEF  189 (323)
T ss_dssp             CCEEEEESTTSSHHHHHHHHGGG
T ss_pred             CCEEEEeeccccchHHHHHHhhh
Confidence            36999999999999999999864

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=96.56  E-value=0.00068  Score=48.30  Aligned_cols=25  Identities=24%  Similarity=0.302  Sum_probs=21.4

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhhC
Q 028300           13 LSFKILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        13 ~~~~I~v~G~~~~GKssli~~l~~~   37 (211)
                      ..-.++|.|++|+|||++++.+...
T Consensus        42 ~~~~lll~GppGtGKT~l~~~l~~~   66 (276)
T d1fnna2          42 HYPRATLLGRPGTGKTVTLRKLWEL   66 (276)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCceEEECCCCCCHHHHHHHHHHH
Confidence            3457999999999999999998864

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=96.45  E-value=0.049  Score=38.45  Aligned_cols=89  Identities=20%  Similarity=0.156  Sum_probs=49.7

Q ss_pred             EEEEEEeCCChhhhcc-chhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCcc-EEEEeecCCCCCCcccC
Q 028300           62 LKLTIWDTAGQERFRT-LTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCV-KMLVGNKVDRDSERVVS  139 (211)
Q Consensus        62 ~~~~l~D~~g~~~~~~-~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p-~viv~nK~Dl~~~~~v~  139 (211)
                      +.+.++|+|+.-.... ........+|.++++... +..++..+.. ....+.......+.+ ..++.|+.+....    
T Consensus       116 ~D~viiD~p~~~~~~~~~~~~~~~~ad~vliv~~~-~~~sl~~~~~-~~~~i~~~~~~~~~~~~~vv~N~~~~~~~----  189 (269)
T d1cp2a_         116 LDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASG-EMMALYAANN-ISKGIQKYAKSGGVRLGGIICNSRKVANE----  189 (269)
T ss_dssp             CSEEEEEEECSSCSTTTTHHHHTTSCCEEEEEECS-SHHHHHHHHH-HHHHHHHHBTTBBCEEEEEEEECCSSSCC----
T ss_pred             CCEEEeccCCccchhHHHHHHHhhccCceeeccch-hhhHHHHHHH-HHHHHHhhccccceeccceEEeeecCCCc----
Confidence            3578889986432222 122233457888777766 4556666655 444444443333443 3478899876442    


Q ss_pred             HHHHHHHHHHcCCeEEE
Q 028300          140 REEGIALAKEHGSLFLE  156 (211)
Q Consensus       140 ~~~~~~~~~~~~~~~~~  156 (211)
                      .+...++.+..+.+++.
T Consensus       190 ~~~~~~~~~~~~~~~~~  206 (269)
T d1cp2a_         190 YELLDAFAKELGSQLIH  206 (269)
T ss_dssp             HHHHHHHHHHHTCCEEE
T ss_pred             cchhhhhHhhcCCeEEE
Confidence            23445566667766543

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=96.43  E-value=0.00086  Score=47.62  Aligned_cols=23  Identities=35%  Similarity=0.566  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhhC
Q 028300           15 FKILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        15 ~~I~v~G~~~~GKssli~~l~~~   37 (211)
                      -.|++.|+||+|||+|++.+...
T Consensus        43 ~giLl~GppGtGKT~la~aia~~   65 (247)
T d1ixza_          43 KGVLLVGPPGVGKTHLARAVAGE   65 (247)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceEEEecCCCCChhHHHHHHHHH
Confidence            35899999999999999999964

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.40  E-value=0.0014  Score=47.46  Aligned_cols=26  Identities=23%  Similarity=0.314  Sum_probs=21.8

Q ss_pred             CCceeeEEEEEcCCCCcHHHHHHHHh
Q 028300           10 SYDLSFKILLIGDSGVGKSSLLVSFI   35 (211)
Q Consensus        10 ~~~~~~~I~v~G~~~~GKssli~~l~   35 (211)
                      ....++-|+|.|++|||||||...+.
T Consensus        23 ~~~~P~iIGi~G~qGSGKSTl~~~l~   48 (286)
T d1odfa_          23 GNKCPLFIFFSGPQGSGKSFTSIQIY   48 (286)
T ss_dssp             TCCSCEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCCCCEEEEeECCCCCCHHHHHHHHH
Confidence            44568999999999999999987663

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=96.39  E-value=0.00085  Score=47.88  Aligned_cols=21  Identities=33%  Similarity=0.371  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhh
Q 028300           16 KILLIGDSGVGKSSLLVSFIS   36 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~   36 (211)
                      .|+|.|++|+|||||++++..
T Consensus        31 ~i~i~G~~G~GKTsLl~~~~~   51 (283)
T d2fnaa2          31 ITLVLGLRRTGKSSIIKIGIN   51 (283)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHH
Confidence            578899999999999999874

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=96.38  E-value=0.0012  Score=45.51  Aligned_cols=25  Identities=36%  Similarity=0.417  Sum_probs=21.6

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhh
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFIS   36 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~~   36 (211)
                      .+..-|.+.|.||||||||.+.|..
T Consensus        22 ~kg~vIwltGlsGsGKTTia~~L~~   46 (208)
T d1m7ga_          22 QRGLTIWLTGLSASGKSTLAVELEH   46 (208)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            4556799999999999999998874

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.36  E-value=0.00097  Score=46.66  Aligned_cols=22  Identities=27%  Similarity=0.620  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q 028300           16 KILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~   37 (211)
                      .+++.||+|+||||+++.++..
T Consensus        35 ~lll~Gp~G~GKTtl~~~i~~~   56 (237)
T d1sxjd2          35 HMLFYGPPGTGKTSTILALTKE   56 (237)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCChHHHHHHHHHH
Confidence            3899999999999999998754

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.29  E-value=0.0011  Score=46.06  Aligned_cols=22  Identities=18%  Similarity=0.492  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q 028300           16 KILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~   37 (211)
                      .+++.||+|+||||+++.+...
T Consensus        38 ~~ll~Gp~G~GKTt~a~~la~~   59 (224)
T d1sxjb2          38 HMIISGMPGIGKTTSVHCLAHE   59 (224)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCchhhHHHHHHH
Confidence            4899999999999999988643

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=96.27  E-value=0.0018  Score=44.53  Aligned_cols=25  Identities=32%  Similarity=0.537  Sum_probs=21.2

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhhC
Q 028300           13 LSFKILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        13 ~~~~I~v~G~~~~GKssli~~l~~~   37 (211)
                      +.+-|+|.|..||||||+.+.|...
T Consensus         2 mk~iIgitG~igSGKStv~~~l~~~   26 (208)
T d1vhta_           2 LRYIVALTGGIGSGKSTVANAFADL   26 (208)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHT
T ss_pred             CCEEEEEECCCcCCHHHHHHHHHHC
Confidence            3567999999999999999987644

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.26  E-value=0.00098  Score=51.42  Aligned_cols=21  Identities=38%  Similarity=0.718  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhh
Q 028300           16 KILLIGDSGVGKSSLLVSFIS   36 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~   36 (211)
                      +|+++||+|||||-|+++|..
T Consensus        51 NILliGPTGvGKTlLAr~LAk   71 (443)
T d1g41a_          51 NILMIGPTGVGKTEIARRLAK   71 (443)
T ss_dssp             CEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            899999999999999999963

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=96.23  E-value=0.0014  Score=46.68  Aligned_cols=25  Identities=24%  Similarity=0.493  Sum_probs=21.4

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhhC
Q 028300           13 LSFKILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        13 ~~~~I~v~G~~~~GKssli~~l~~~   37 (211)
                      .+-.|++.||||+|||++++.+...
T Consensus        44 ~~~~iLL~GppGtGKT~la~~iA~~   68 (256)
T d1lv7a_          44 IPKGVLMVGPPGTGKTLLAKAIAGE   68 (256)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCCeEEeeCCCCCCccHHHHHHHHH
Confidence            3446899999999999999999854

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.23  E-value=0.001  Score=47.03  Aligned_cols=22  Identities=32%  Similarity=0.632  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q 028300           16 KILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~   37 (211)
                      .+++.|++|+||||+++.+...
T Consensus        35 ~lll~Gp~G~GKTt~~~~la~~   56 (252)
T d1sxje2          35 HLLLYGPNGTGKKTRCMALLES   56 (252)
T ss_dssp             CEEEECSTTSSHHHHHHTHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHh
Confidence            5899999999999999988754

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.18  E-value=0.0019  Score=46.13  Aligned_cols=25  Identities=28%  Similarity=0.379  Sum_probs=21.6

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhhC
Q 028300           13 LSFKILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        13 ~~~~I~v~G~~~~GKssli~~l~~~   37 (211)
                      .+-.|++.||||+|||++++.+...
T Consensus        37 ~~~giLL~GppGtGKT~l~~ala~~   61 (258)
T d1e32a2          37 PPRGILLYGPPGTGKTLIARAVANE   61 (258)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCceeEEecCCCCCchHHHHHHHHH
Confidence            3446999999999999999999864

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.17  E-value=0.0014  Score=45.63  Aligned_cols=22  Identities=32%  Similarity=0.641  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q 028300           16 KILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~   37 (211)
                      .+++.|++|+||||++..++..
T Consensus        37 ~lLl~Gp~G~GKttl~~~la~~   58 (227)
T d1sxjc2          37 HLLFYGPPGTGKTSTIVALARE   58 (227)
T ss_dssp             CEEEECSSSSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCChhHHHHHHHHH
Confidence            4889999999999999999864

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.14  E-value=0.0015  Score=44.71  Aligned_cols=21  Identities=29%  Similarity=0.436  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhh
Q 028300           16 KILLIGDSGVGKSSLLVSFIS   36 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~   36 (211)
                      -|+|-|..||||||+++.|..
T Consensus         2 lI~ieG~dGsGKST~~~~L~~   22 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSG   22 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            488999999999999998864

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=95.99  E-value=0.0029  Score=43.38  Aligned_cols=23  Identities=26%  Similarity=0.495  Sum_probs=20.1

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhh
Q 028300           14 SFKILLIGDSGVGKSSLLVSFIS   36 (211)
Q Consensus        14 ~~~I~v~G~~~~GKssli~~l~~   36 (211)
                      .+-|+|.|..||||||+.+.|..
T Consensus         2 ~~iIgITG~igSGKStv~~~l~~   24 (205)
T d1jjva_           2 TYIVGLTGGIGSGKTTIANLFTD   24 (205)
T ss_dssp             CEEEEEECSTTSCHHHHHHHHHT
T ss_pred             cEEEEEECCCCCCHHHHHHHHHH
Confidence            46799999999999999997753

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.96  E-value=0.0018  Score=46.43  Aligned_cols=25  Identities=28%  Similarity=0.394  Sum_probs=21.7

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhhC
Q 028300           13 LSFKILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        13 ~~~~I~v~G~~~~GKssli~~l~~~   37 (211)
                      ..-.|++.|++|+|||+|++.+.+.
T Consensus        40 ~~~giLL~Gp~GtGKT~l~~ala~~   64 (265)
T d1r7ra3          40 PSKGVLFYGPPGCGKTLLAKAIANE   64 (265)
T ss_dssp             CCCEEEEBCCTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCcchhHHHHHHHH
Confidence            3446999999999999999999865

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=95.91  E-value=0.0022  Score=44.07  Aligned_cols=20  Identities=25%  Similarity=0.418  Sum_probs=17.8

Q ss_pred             EEEEcCCCCcHHHHHHHHhh
Q 028300           17 ILLIGDSGVGKSSLLVSFIS   36 (211)
Q Consensus        17 I~v~G~~~~GKssli~~l~~   36 (211)
                      |+|-|..||||||+++.|..
T Consensus         5 IviEG~dGsGKsT~~~~L~~   24 (210)
T d4tmka_           5 IVIEGLEGAGKTTARNVVVE   24 (210)
T ss_dssp             EEEEECTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78889999999999998764

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=95.77  E-value=0.0018  Score=49.04  Aligned_cols=23  Identities=30%  Similarity=0.599  Sum_probs=18.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhhC
Q 028300           15 FKILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        15 ~~I~v~G~~~~GKssli~~l~~~   37 (211)
                      -+++++|+||||||++++.|...
T Consensus        44 ~n~llvG~~GvGKtaiv~~la~~   66 (387)
T d1qvra2          44 NNPVLIGEPGVGKTAIVEGLAQR   66 (387)
T ss_dssp             CCCEEEECTTSCHHHHHHHHHHH
T ss_pred             CCCeEECCCCCCHHHHHHHHHHH
Confidence            35689999999999999776643

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.73  E-value=0.0029  Score=43.22  Aligned_cols=23  Identities=13%  Similarity=0.261  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCC
Q 028300           16 KILLIGDSGVGKSSLLVSFISSS   38 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~~   38 (211)
                      -+.|.|+||+|||+|...++.+.
T Consensus        25 v~~i~G~~GsGKT~l~l~la~~~   47 (242)
T d1n0wa_          25 ITEMFGEFRTGKTQICHTLAVTC   47 (242)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHT
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHH
Confidence            46789999999999999998654

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.63  E-value=0.0033  Score=43.29  Aligned_cols=20  Identities=30%  Similarity=0.395  Sum_probs=17.1

Q ss_pred             EEEEcCCCCcHHHHHHHHhh
Q 028300           17 ILLIGDSGVGKSSLLVSFIS   36 (211)
Q Consensus        17 I~v~G~~~~GKssli~~l~~   36 (211)
                      |+|-|..||||||+++.|..
T Consensus         6 I~ieG~dGsGKsT~~~~L~~   25 (209)
T d1nn5a_           6 IVLEGVDRAGKSTQSRKLVE   25 (209)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            77889999999998887754

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=95.61  E-value=0.0033  Score=47.11  Aligned_cols=24  Identities=21%  Similarity=0.277  Sum_probs=20.7

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhhC
Q 028300           14 SFKILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        14 ~~~I~v~G~~~~GKssli~~l~~~   37 (211)
                      .-.+++.||||+|||+|.+.+.+.
T Consensus       154 ~~~~~~~g~~~~gk~~~~~~~~~~  177 (362)
T d1svma_         154 KRYWLFKGPIDSGKTTLAAALLEL  177 (362)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             cCeEEEECCCCCCHHHHHHHHHHH
Confidence            347899999999999999998753

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=95.55  E-value=0.0049  Score=41.07  Aligned_cols=24  Identities=38%  Similarity=0.707  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhhCC
Q 028300           15 FKILLIGDSGVGKSSLLVSFISSS   38 (211)
Q Consensus        15 ~~I~v~G~~~~GKssli~~l~~~~   38 (211)
                      .-|++.|++|+||||+.-.|....
T Consensus        15 ~gvl~~G~sG~GKStlal~l~~~g   38 (176)
T d1kkma_          15 LGVLITGDSGVGKSETALELVQRG   38 (176)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHTT
T ss_pred             EEEEEEeCCCCCHHHHHHHHHHcC
Confidence            358999999999999999988664

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.54  E-value=0.0035  Score=43.69  Aligned_cols=23  Identities=26%  Similarity=0.306  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCC
Q 028300           16 KILLIGDSGVGKSSLLVSFISSS   38 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~~   38 (211)
                      -+.|.|+||+|||+|+..+....
T Consensus        36 ~~li~G~pGsGKT~l~lq~~~~~   58 (251)
T d1szpa2          36 ITELFGEFRTGKSQLCHTLAVTC   58 (251)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTTT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHh
Confidence            46889999999999999987543

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.47  E-value=0.0028  Score=44.30  Aligned_cols=22  Identities=27%  Similarity=0.366  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q 028300           16 KILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~   37 (211)
                      .|+|-|+.||||||+++.|...
T Consensus         4 ~I~ieG~dGsGKST~~~~L~~~   25 (241)
T d1p5zb_           4 KISIEGNIAAGKSTFVNILKQL   25 (241)
T ss_dssp             EEEEECSTTSSHHHHHTTTGGG
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999988753

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=95.44  E-value=0.004  Score=43.69  Aligned_cols=23  Identities=22%  Similarity=0.306  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCC
Q 028300           16 KILLIGDSGVGKSSLLVSFISSS   38 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~~   38 (211)
                      -+.|.|+||+|||+|..+++.+-
T Consensus        38 ~~li~G~pGsGKT~~~lq~~~~~   60 (254)
T d1pzna2          38 ITEVFGEFGSGKTQLAHTLAVMV   60 (254)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHh
Confidence            46889999999999999887543

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=95.39  E-value=0.0055  Score=40.84  Aligned_cols=24  Identities=38%  Similarity=0.659  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhhCC
Q 028300           15 FKILLIGDSGVGKSSLLVSFISSS   38 (211)
Q Consensus        15 ~~I~v~G~~~~GKssli~~l~~~~   38 (211)
                      .-|++.|++|+||||+...|....
T Consensus        16 ~gvli~G~sG~GKS~lal~l~~~G   39 (177)
T d1knxa2          16 VGVLLTGRSGIGKSECALDLINKN   39 (177)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHTTT
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHcC
Confidence            358899999999999999988654

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=95.31  E-value=0.0022  Score=46.35  Aligned_cols=21  Identities=33%  Similarity=0.414  Sum_probs=15.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 028300           15 FKILLIGDSGVGKSSLLVSFI   35 (211)
Q Consensus        15 ~~I~v~G~~~~GKssli~~l~   35 (211)
                      .-|+|.|++||||||+.++|.
T Consensus         5 pIIgIaG~SGSGKTTva~~l~   25 (288)
T d1a7ja_           5 PIISVTGSSGAGTSTVKHTFD   25 (288)
T ss_dssp             CEEEEESCC---CCTHHHHHH
T ss_pred             CEEEEECCCCCcHHHHHHHHH
Confidence            359999999999999999774

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=95.22  E-value=0.0026  Score=47.01  Aligned_cols=21  Identities=33%  Similarity=0.667  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhh
Q 028300           16 KILLIGDSGVGKSSLLVSFIS   36 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~   36 (211)
                      .|++.|+||+|||+|++++..
T Consensus        30 ~vLl~G~pG~GKT~lar~~~~   50 (333)
T d1g8pa_          30 GVLVFGDRGTGKSTAVRALAA   50 (333)
T ss_dssp             CEEEECCGGGCTTHHHHHHHH
T ss_pred             eEEEECCCCccHHHHHHHHHH
Confidence            589999999999999998863

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=95.14  E-value=0.0061  Score=42.03  Aligned_cols=21  Identities=33%  Similarity=0.537  Sum_probs=19.2

Q ss_pred             EEEEcCCCCcHHHHHHHHhhC
Q 028300           17 ILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        17 I~v~G~~~~GKssli~~l~~~   37 (211)
                      +.+.|++|+|||.|++.+.+.
T Consensus        39 l~l~G~~G~GKTHLl~A~~~~   59 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGNE   59 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHH
Confidence            789999999999999999865

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=95.10  E-value=0.0062  Score=43.76  Aligned_cols=24  Identities=38%  Similarity=0.558  Sum_probs=20.6

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhhC
Q 028300           14 SFKILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        14 ~~~I~v~G~~~~GKssli~~l~~~   37 (211)
                      ..-|+|.|..|+|||||+..+.+.
T Consensus        44 ~~~v~I~GmgGiGKTtLA~~v~~~   67 (277)
T d2a5yb3          44 SFFLFLHGRAGSGKSVIASQALSK   67 (277)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHh
Confidence            346889999999999999998764

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.09  E-value=0.0062  Score=42.54  Aligned_cols=22  Identities=23%  Similarity=0.469  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q 028300           16 KILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~   37 (211)
                      -|+|=|..||||||+++.|...
T Consensus         4 ~IviEG~~GsGKST~~~~L~~~   25 (241)
T d2ocpa1           4 RLSIEGNIAVGKSTFVKLLTKT   25 (241)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHH
Confidence            5889999999999999988753

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=95.09  E-value=0.008  Score=39.75  Aligned_cols=25  Identities=36%  Similarity=0.634  Sum_probs=21.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhhCCC
Q 028300           15 FKILLIGDSGVGKSSLLVSFISSSV   39 (211)
Q Consensus        15 ~~I~v~G~~~~GKssli~~l~~~~~   39 (211)
                      .-|++.|++|+||||+.-.+....+
T Consensus        16 ~gvli~G~sg~GKS~la~~l~~~g~   40 (169)
T d1ko7a2          16 VGVLITGDSGIGKSETALELIKRGH   40 (169)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHTTC
T ss_pred             EEEEEEeCCCCCHHHHHHHHHHcCC
Confidence            4689999999999999988886643

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=95.08  E-value=0.0068  Score=44.44  Aligned_cols=22  Identities=32%  Similarity=0.617  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q 028300           16 KILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~   37 (211)
                      .++++||+|+|||.|.+.|...
T Consensus        54 ~~lf~Gp~GvGKT~lak~la~~   75 (315)
T d1r6bx3          54 SFLFAGPTGVGKTEVTVQLSKA   75 (315)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCcchhHHHHHHHHhh
Confidence            6889999999999999998743

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=95.05  E-value=0.0087  Score=44.14  Aligned_cols=25  Identities=32%  Similarity=0.325  Sum_probs=22.2

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhhC
Q 028300           13 LSFKILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        13 ~~~~I~v~G~~~~GKssli~~l~~~   37 (211)
                      ..++|.|=|.-|+||||+++.|...
T Consensus         5 ~~~rI~iEG~iGsGKSTl~~~L~~~   29 (333)
T d1p6xa_           5 TIVRIYLDGVYGIGKSTTGRVMASA   29 (333)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHSG
T ss_pred             ceEEEEEECCccCCHHHHHHHHHHH
Confidence            4689999999999999999988754

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=95.05  E-value=0.0014  Score=44.36  Aligned_cols=18  Identities=39%  Similarity=0.768  Sum_probs=16.1

Q ss_pred             EEEcCCCCcHHHHHHHHh
Q 028300           18 LLIGDSGVGKSSLLVSFI   35 (211)
Q Consensus        18 ~v~G~~~~GKssli~~l~   35 (211)
                      +|+|+.|||||||+.++.
T Consensus        28 vi~G~NGsGKStil~Ai~   45 (222)
T d1qhla_          28 TLSGGNGAGKSTTMAAFV   45 (222)
T ss_dssp             HHHSCCSHHHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHH
Confidence            467999999999999985

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=95.04  E-value=0.0063  Score=44.86  Aligned_cols=26  Identities=27%  Similarity=0.420  Sum_probs=22.9

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhhC
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~~~   37 (211)
                      ...++|+|=|.-|+||||+++.|...
T Consensus         3 m~~lrI~IEG~iGsGKSTl~~~L~~~   28 (331)
T d1osna_           3 MGVLRIYLDGAYGIGKTTAAEEFLHH   28 (331)
T ss_dssp             EEEEEEEEEESSSSCTTHHHHHHHHT
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHHH
Confidence            35689999999999999999999865

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=95.04  E-value=0.0065  Score=42.38  Aligned_cols=25  Identities=32%  Similarity=0.522  Sum_probs=20.7

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhhC
Q 028300           13 LSFKILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        13 ~~~~I~v~G~~~~GKssli~~l~~~   37 (211)
                      .---+.|.|+||+|||+|+.++...
T Consensus        25 ~gsl~li~G~pGsGKT~l~~qia~~   49 (242)
T d1tf7a2          25 KDSIILATGATGTGKTLLVSRFVEN   49 (242)
T ss_dssp             SSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHHH
Confidence            3345788999999999999998755

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=95.02  E-value=0.0073  Score=44.26  Aligned_cols=21  Identities=19%  Similarity=0.468  Sum_probs=17.6

Q ss_pred             EEEEcCCCCcHHHHHHHHhhC
Q 028300           17 ILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        17 I~v~G~~~~GKssli~~l~~~   37 (211)
                      +++.|+||+|||.|.+.+...
T Consensus       126 ~l~~G~pG~GKT~la~ala~~  146 (321)
T d1w44a_         126 VIVTGKGNSGKTPLVHALGEA  146 (321)
T ss_dssp             EEEECSSSSCHHHHHHHHHHH
T ss_pred             EEEECCCCccHHHHHHHHHHH
Confidence            344699999999999999854

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=94.99  E-value=0.0059  Score=45.71  Aligned_cols=25  Identities=32%  Similarity=0.493  Sum_probs=21.1

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhhC
Q 028300           13 LSFKILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        13 ~~~~I~v~G~~~~GKssli~~l~~~   37 (211)
                      ..-+|+++||+|||||-|.++|...
T Consensus        67 p~~niLfiGPTGvGKTElAk~LA~~   91 (364)
T d1um8a_          67 SKSNILLIGPTGSGKTLMAQTLAKH   91 (364)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCcceeeeCCCCccHHHHHHHHHhh
Confidence            3456999999999999999998743

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.76  E-value=0.0087  Score=41.84  Aligned_cols=23  Identities=17%  Similarity=0.173  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhhC
Q 028300           15 FKILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        15 ~~I~v~G~~~~GKssli~~l~~~   37 (211)
                      --+.|.|+||+|||+|..+++..
T Consensus        38 ~~~~i~G~~GsGKT~lalq~~~~   60 (258)
T d1v5wa_          38 AITEAFGEFRTGKTQLSHTLCVT   60 (258)
T ss_dssp             EEEEEECCTTCTHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHH
Confidence            35789999999999999999864

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=94.70  E-value=0.0087  Score=41.61  Aligned_cols=23  Identities=17%  Similarity=0.173  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCC
Q 028300           16 KILLIGDSGVGKSSLLVSFISSS   38 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~~   38 (211)
                      -+.|.|+||+|||+|...++.+-
T Consensus        36 l~~i~G~~G~GKT~~~l~~a~~~   58 (258)
T d2i1qa2          36 VTEFAGVFGSGKTQIMHQSCVNL   58 (258)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHH
Confidence            46788999999999999997543

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=94.69  E-value=0.0075  Score=40.95  Aligned_cols=26  Identities=27%  Similarity=0.307  Sum_probs=21.9

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhhC
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~~~   37 (211)
                      ++.-.|++.||+++|||.|+..++..
T Consensus        51 PKkn~i~~~GP~~TGKS~f~~sl~~~   76 (205)
T d1tuea_          51 PKKNCLVFCGPANTGKSYFGMSFIHF   76 (205)
T ss_dssp             TTCSEEEEESCGGGCHHHHHHHHHHH
T ss_pred             CCceEEEEECCCCccHHHHHHHHHHH
Confidence            45567899999999999999988754

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=94.68  E-value=0.0089  Score=43.95  Aligned_cols=24  Identities=17%  Similarity=0.419  Sum_probs=21.0

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhh
Q 028300           13 LSFKILLIGDSGVGKSSLLVSFIS   36 (211)
Q Consensus        13 ~~~~I~v~G~~~~GKssli~~l~~   36 (211)
                      .-++|+|=|+-|+||||+++.|..
T Consensus         3 ~~lrI~IEG~iGsGKTTl~~~La~   26 (329)
T d1e2ka_           3 TLLRVYIDGPHGMGKTTTTQLLVA   26 (329)
T ss_dssp             EEEEEEECSCTTSSHHHHHHHHTC
T ss_pred             CceEEEEECCcCCCHHHHHHHHHH
Confidence            346899999999999999998864

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=94.62  E-value=0.0094  Score=45.20  Aligned_cols=22  Identities=36%  Similarity=0.520  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q 028300           16 KILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~   37 (211)
                      -|+|.|+.||||||.+..++..
T Consensus       160 liLvtGpTGSGKSTTl~~~l~~  181 (401)
T d1p9ra_         160 IILVTGPTGSGKSTTLYAGLQE  181 (401)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHH
T ss_pred             eEEEEcCCCCCccHHHHHHhhh
Confidence            3899999999999999999864

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=94.61  E-value=0.011  Score=40.50  Aligned_cols=21  Identities=19%  Similarity=0.444  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhh
Q 028300           16 KILLIGDSGVGKSSLLVSFIS   36 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~   36 (211)
                      -+++.|++|+||||++..+..
T Consensus        26 ~lLl~Gp~G~GKtt~a~~~a~   46 (207)
T d1a5ta2          26 ALLIQALPGMGDDALIYALSR   46 (207)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            489999999999999998765

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.61  E-value=0.0098  Score=40.91  Aligned_cols=20  Identities=25%  Similarity=0.290  Sum_probs=17.9

Q ss_pred             EEEEcCCCCcHHHHHHHHhh
Q 028300           17 ILLIGDSGVGKSSLLVSFIS   36 (211)
Q Consensus        17 I~v~G~~~~GKssli~~l~~   36 (211)
                      |+|-|..||||||+++.|..
T Consensus         6 I~iEG~DGsGKST~~~~L~~   25 (214)
T d1tmka_           6 ILIEGLDRTGKTTQCNILYK   25 (214)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHH
Confidence            78999999999999998763

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=94.52  E-value=0.0062  Score=44.14  Aligned_cols=18  Identities=28%  Similarity=0.606  Sum_probs=16.3

Q ss_pred             EEEcCCCCcHHHHHHHHh
Q 028300           18 LLIGDSGVGKSSLLVSFI   35 (211)
Q Consensus        18 ~v~G~~~~GKssli~~l~   35 (211)
                      +++|+.|||||+++.++.
T Consensus        28 vlvG~NgsGKS~iL~Ai~   45 (308)
T d1e69a_          28 AIVGPNGSGKSNIIDAIK   45 (308)
T ss_dssp             EEECCTTTCSTHHHHHHH
T ss_pred             EEECCCCCcHHHHHHHHH
Confidence            688999999999999874

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=94.52  E-value=0.011  Score=41.34  Aligned_cols=21  Identities=33%  Similarity=0.506  Sum_probs=18.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhh
Q 028300           16 KILLIGDSGVGKSSLLVSFIS   36 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~   36 (211)
                      .+++.|++|+|||++++.+..
T Consensus        36 ~~Ll~Gp~G~GKtt~a~~~~~   56 (239)
T d1njfa_          36 AYLFSGTRGVGKTSIARLLAK   56 (239)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHH
Confidence            478899999999999998753

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=94.39  E-value=0.012  Score=42.00  Aligned_cols=21  Identities=29%  Similarity=0.463  Sum_probs=18.0

Q ss_pred             EEEEcCCCCcHHHHHHHHhhC
Q 028300           17 ILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        17 I~v~G~~~~GKssli~~l~~~   37 (211)
                      ++|.|+||+|||+|+..+..+
T Consensus        38 ~vi~G~~G~GKT~~~~~la~~   58 (277)
T d1cr2a_          38 IMVTSGSGMGKSTFVRQQALQ   58 (277)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHHh
Confidence            578999999999998888743

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=94.32  E-value=0.012  Score=40.54  Aligned_cols=21  Identities=33%  Similarity=0.623  Sum_probs=17.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhh
Q 028300           16 KILLIGDSGVGKSSLLVSFIS   36 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~   36 (211)
                      -+.|.|+||+|||+|+..++.
T Consensus        28 ~~~I~G~~G~GKT~la~~~~~   48 (242)
T d1tf7a1          28 STLVSGTSGTGKTLFSIQFLY   48 (242)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHH
Confidence            467889999999999887764

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.11  E-value=0.012  Score=44.33  Aligned_cols=21  Identities=33%  Similarity=0.651  Sum_probs=17.6

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHh
Q 028300           14 SFKILLIGDSGVGKSSLLVSFI   35 (211)
Q Consensus        14 ~~~I~v~G~~~~GKssli~~l~   35 (211)
                      .++ +|+|+.|+|||+++.++.
T Consensus        26 ~l~-~i~G~NGsGKS~ileAi~   46 (427)
T d1w1wa_          26 NFT-SIIGPNGSGKSNMMDAIS   46 (427)
T ss_dssp             SEE-EEECSTTSSHHHHHHHHH
T ss_pred             CEE-EEECCCCCCHHHHHHHHH
Confidence            354 578999999999999974

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=94.05  E-value=0.015  Score=40.51  Aligned_cols=21  Identities=29%  Similarity=0.275  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhh
Q 028300           16 KILLIGDSGVGKSSLLVSFIS   36 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~   36 (211)
                      .|++.|..||||||+.+.|..
T Consensus         3 iIgiTG~igSGKsTva~~l~e   23 (241)
T d1deka_           3 LIFLSGVKRSGKDTTADFIMS   23 (241)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            489999999999999998864

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=93.55  E-value=0.028  Score=39.97  Aligned_cols=28  Identities=18%  Similarity=0.343  Sum_probs=23.4

Q ss_pred             CCceeeEEEEEcCCCCcHHHHHHHHhhC
Q 028300           10 SYDLSFKILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        10 ~~~~~~~I~v~G~~~~GKssli~~l~~~   37 (211)
                      ..++.--+.+.|++++|||+|++.+...
T Consensus       100 ~~~k~n~~~l~G~~~tGKS~f~~~i~~~  127 (267)
T d1u0ja_         100 KFGKRNTIWLFGPATTGKTNIAEAIAHT  127 (267)
T ss_dssp             CSTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCccEEEEEEcCCCCCHHHHHHHHHHH
Confidence            4456778899999999999999988754

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=93.55  E-value=0.014  Score=42.03  Aligned_cols=17  Identities=24%  Similarity=0.477  Sum_probs=13.8

Q ss_pred             EEEEcCCCCcHHHH-HHH
Q 028300           17 ILLIGDSGVGKSSL-LVS   33 (211)
Q Consensus        17 I~v~G~~~~GKssl-i~~   33 (211)
                      ++|+|+||+||||. +++
T Consensus        17 ~lI~g~aGTGKTt~l~~r   34 (306)
T d1uaaa1          17 CLVLAGAGSGKTRVITNK   34 (306)
T ss_dssp             EEECCCTTSCHHHHHHHH
T ss_pred             EEEEeeCCccHHHHHHHH
Confidence            67889999999975 443

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=93.46  E-value=0.018  Score=43.77  Aligned_cols=23  Identities=35%  Similarity=0.517  Sum_probs=19.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhhC
Q 028300           15 FKILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        15 ~~I~v~G~~~~GKssli~~l~~~   37 (211)
                      -+++|+|.+|+|||+++..++..
T Consensus        51 ~H~~I~G~tGsGKT~~l~~li~~   73 (433)
T d1e9ra_          51 RHLLVNGATGTGKSVLLRELAYT   73 (433)
T ss_dssp             GCEEEEECTTSSHHHHHHHHHHH
T ss_pred             ceEEEEeCCCCcHHHHHHHHHHH
Confidence            35899999999999998877633

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=93.37  E-value=0.018  Score=41.82  Aligned_cols=15  Identities=33%  Similarity=0.806  Sum_probs=13.1

Q ss_pred             EEEEcCCCCcHHHHH
Q 028300           17 ILLIGDSGVGKSSLL   31 (211)
Q Consensus        17 I~v~G~~~~GKssli   31 (211)
                      ++|.|++|+||||.+
T Consensus        27 ~lV~g~aGSGKTt~l   41 (318)
T d1pjra1          27 LLIMAGAGSGKTRVL   41 (318)
T ss_dssp             EEEEECTTSCHHHHH
T ss_pred             EEEEecCCccHHHHH
Confidence            788999999999764

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=93.23  E-value=0.025  Score=40.10  Aligned_cols=20  Identities=30%  Similarity=0.433  Sum_probs=17.2

Q ss_pred             EEEEcCCCCcHHHHHHHHhh
Q 028300           17 ILLIGDSGVGKSSLLVSFIS   36 (211)
Q Consensus        17 I~v~G~~~~GKssli~~l~~   36 (211)
                      .+|.|++|+|||+|+-.+..
T Consensus        32 ~~i~G~~G~GKS~l~l~la~   51 (274)
T d1nlfa_          32 GALVSPGGAGKSMLALQLAA   51 (274)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHH
Confidence            46899999999999988763

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=93.22  E-value=0.029  Score=40.31  Aligned_cols=22  Identities=27%  Similarity=0.413  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q 028300           16 KILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~   37 (211)
                      |++|+|++|+|||+|+..+..+
T Consensus        45 r~~I~g~~g~GKT~l~~~i~~~   66 (289)
T d1xpua3          45 RGLIVAPPKAGKTMLLQNIAQS   66 (289)
T ss_dssp             EEEEEECSSSSHHHHHHHHHHH
T ss_pred             eeeEeCCCCCCHHHHHHHHHHH
Confidence            8999999999999999988754

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=92.69  E-value=0.044  Score=39.93  Aligned_cols=22  Identities=32%  Similarity=0.685  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q 028300           16 KILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~   37 (211)
                      .++++|++|+|||.+.+.|...
T Consensus        55 ~~lf~Gp~G~GKt~lak~la~~   76 (315)
T d1qvra3          55 SFLFLGPTGVGKTELAKTLAAT   76 (315)
T ss_dssp             EEEEBSCSSSSHHHHHHHHHHH
T ss_pred             EEEEECCCcchHHHHHHHHHHH
Confidence            5788899999999999988743

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=92.32  E-value=0.04  Score=40.93  Aligned_cols=19  Identities=21%  Similarity=0.494  Sum_probs=15.5

Q ss_pred             EEEEEcCCCCcHHHHHHHH
Q 028300           16 KILLIGDSGVGKSSLLVSF   34 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l   34 (211)
                      -.+|.|+||+|||+++..+
T Consensus       165 ~~vI~G~pGTGKTt~i~~~  183 (359)
T d1w36d1         165 ISVISGGPGTGKTTTVAKL  183 (359)
T ss_dssp             EEEEECCTTSTHHHHHHHH
T ss_pred             eEEEEcCCCCCceehHHHH
Confidence            4678899999999987553

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.78  E-value=0.067  Score=32.89  Aligned_cols=25  Identities=24%  Similarity=0.393  Sum_probs=21.5

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhh
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFIS   36 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~~   36 (211)
                      ..=+.|.+.|..|+||++|.+.|..
T Consensus         4 kqgf~i~~tg~~~~gk~~ia~al~~   28 (122)
T d1g8fa3           4 KQGFSIVLGNSLTVSREQLSIALLS   28 (122)
T ss_dssp             GCCEEEEECTTCCSCHHHHHHHHHH
T ss_pred             ccceEEEEeCCCCCCHHHHHHHHHH
Confidence            3457899999999999999999864

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=91.26  E-value=0.064  Score=37.96  Aligned_cols=22  Identities=23%  Similarity=0.449  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q 028300           16 KILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~   37 (211)
                      -+.|.|++++|||+|+-.++..
T Consensus        56 itei~G~~gsGKTtl~l~~~~~   77 (263)
T d1u94a1          56 IVEIYGPESSGKTTLTLQVIAA   77 (263)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEecCCCcHHHHHHHHHHHH
Confidence            4678999999999999888755

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=91.09  E-value=0.059  Score=38.35  Aligned_cols=22  Identities=45%  Similarity=0.792  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q 028300           16 KILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~   37 (211)
                      |++++|++|+|||+|+..+..+
T Consensus        70 r~~If~~~g~GKt~l~~~i~~~   91 (276)
T d2jdid3          70 KIGLFGGAGVGKTVLIMELINN   91 (276)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHH
T ss_pred             EEEeeCCCCCCHHHHHHHHHHH
Confidence            7999999999999998888754

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=90.39  E-value=0.082  Score=36.98  Aligned_cols=22  Identities=32%  Similarity=0.513  Sum_probs=18.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhh
Q 028300           15 FKILLIGDSGVGKSSLLVSFIS   36 (211)
Q Consensus        15 ~~I~v~G~~~~GKssli~~l~~   36 (211)
                      .-|+|.|++|+||+.+.+.+-.
T Consensus        24 ~pvlI~Ge~GtGK~~~A~~ih~   45 (247)
T d1ny5a2          24 CPVLITGESGVGKEVVARLIHK   45 (247)
T ss_dssp             SCEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEECCCCcCHHHHHHHHHH
Confidence            3479999999999999988754

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=89.33  E-value=0.12  Score=35.76  Aligned_cols=19  Identities=21%  Similarity=0.340  Sum_probs=17.3

Q ss_pred             EEEEcCCCCcHHHHHHHHh
Q 028300           17 ILLIGDSGVGKSSLLVSFI   35 (211)
Q Consensus        17 I~v~G~~~~GKssli~~l~   35 (211)
                      ++|.|+..+|||++++.+.
T Consensus        44 ~iiTGpN~~GKSt~lk~i~   62 (234)
T d1wb9a2          44 LIITGPNMGGKSTYMRQTA   62 (234)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEeccCchhhHHHHHHHH
Confidence            5888999999999999875

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=89.09  E-value=0.13  Score=35.39  Aligned_cols=20  Identities=30%  Similarity=0.423  Sum_probs=17.8

Q ss_pred             EEEEcCCCCcHHHHHHHHhh
Q 028300           17 ILLIGDSGVGKSSLLVSFIS   36 (211)
Q Consensus        17 I~v~G~~~~GKssli~~l~~   36 (211)
                      +++.|+..+|||++++++.-
T Consensus        38 ~iiTGpN~~GKSt~lk~i~l   57 (224)
T d1ewqa2          38 VLITGPNMAGKSTFLRQTAL   57 (224)
T ss_dssp             EEEESCSSSSHHHHHHHHHH
T ss_pred             EEEECCCccccchhhhhhHH
Confidence            68999999999999998763

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=89.08  E-value=1.2  Score=29.85  Aligned_cols=66  Identities=12%  Similarity=0.102  Sum_probs=43.0

Q ss_pred             EEEEEEeCCChhhhccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEE-EEeecCCCCCC
Q 028300           62 LKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKM-LVGNKVDRDSE  135 (211)
Q Consensus        62 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~v-iv~nK~Dl~~~  135 (211)
                      +.+.++|+++....  .....+..+|.++++...+ ..++..+.. ....+..    .+.|++ +|.|+.+....
T Consensus       112 ~d~IiiD~~~~~~~--~~~~~l~~aD~viiv~~~~-~~s~~~~~~-~~~~~~~----~~~~~~giv~N~~~~~~~  178 (237)
T d1g3qa_         112 FDFILIDCPAGLQL--DAMSAMLSGEEALLVTNPE-ISCLTDTMK-VGIVLKK----AGLAILGFVLNRYGRSDR  178 (237)
T ss_dssp             CSEEEEECCSSSSH--HHHHHHTTCSEEEEEECSC-HHHHHHHHH-HHHHHHH----TTCEEEEEEEEEETSCTT
T ss_pred             CCEEEEcccccccc--cchhhhhhhhccccccccc-ceecchhhH-HHHHHhh----hhhhhhhhhhcccccccc
Confidence            46788999875432  2444567799999999875 445555555 4444432    356654 89999986543

>d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU
species: Salmonella typhimurium [TaxId: 90371]

Probab=87.60  E-value=0.19  Score=33.17  Aligned_cols=21  Identities=33%  Similarity=0.474  Sum_probs=18.6

Q ss_pred             EEEEcCCCCcHHHHHHHHhhC
Q 028300           17 ILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        17 I~v~G~~~~GKssli~~l~~~   37 (211)
                      |+|+|...||||.+..++...
T Consensus         2 iLVtGGarSGKS~~AE~l~~~   22 (180)
T d1c9ka_           2 ILVTGGARSGKSRHAEALIGD   22 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCS
T ss_pred             EEEECCCCccHHHHHHHHHhc
Confidence            689999999999999998743

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=87.44  E-value=0.2  Score=33.66  Aligned_cols=20  Identities=20%  Similarity=0.464  Sum_probs=17.0

Q ss_pred             EEEEEcCC-CCcHHHHHHHHh
Q 028300           16 KILLIGDS-GVGKSSLLVSFI   35 (211)
Q Consensus        16 ~I~v~G~~-~~GKssli~~l~   35 (211)
                      |+.|.|.. ||||||+.-.|.
T Consensus         3 ~~~i~gt~~GVGKTtvs~~La   23 (224)
T d1byia_           3 RYFVTGTDTEVGKTVASCALL   23 (224)
T ss_dssp             EEEEEESSTTSCHHHHHHHHH
T ss_pred             eEEEEECCCCccHHHHHHHHH
Confidence            78899995 999999977765

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=87.35  E-value=0.12  Score=37.25  Aligned_cols=15  Identities=40%  Similarity=0.687  Sum_probs=13.2

Q ss_pred             EEEcCCCCcHHHHHH
Q 028300           18 LLIGDSGVGKSSLLV   32 (211)
Q Consensus        18 ~v~G~~~~GKssli~   32 (211)
                      +++|.+|+|||||-.
T Consensus        18 lfFGLSGTGKTTLs~   32 (313)
T d2olra1          18 VFFGLSGTGKTTLST   32 (313)
T ss_dssp             EEECSTTSSHHHHHC
T ss_pred             EEEccCCCCccccee
Confidence            699999999999763

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=87.18  E-value=0.19  Score=35.56  Aligned_cols=22  Identities=18%  Similarity=0.360  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q 028300           16 KILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~   37 (211)
                      -+.+.|++++|||+|+..++..
T Consensus        59 itei~G~~~sGKT~l~l~~~~~   80 (268)
T d1xp8a1          59 ITEIYGPESGGKTTLALAIVAQ   80 (268)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEecCCccchHHHHHHHHHH
Confidence            4678999999999999888754

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=86.65  E-value=0.21  Score=35.28  Aligned_cols=26  Identities=15%  Similarity=0.248  Sum_probs=20.1

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhhC
Q 028300           12 DLSFKILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        12 ~~~~~I~v~G~~~~GKssli~~l~~~   37 (211)
                      +.---+.+.|++++|||+|+..+...
T Consensus        58 ~~g~i~e~~G~~~~GKT~l~l~~~~~   83 (269)
T d1mo6a1          58 PRGRVIEIYGPESSGKTTVALHAVAN   83 (269)
T ss_dssp             CSSSEEEEECSSSSSHHHHHHHHHHH
T ss_pred             ccceeEEEecCCCcHHHHHHHHHHHH
Confidence            33445678999999999998877743

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=86.64  E-value=0.14  Score=37.08  Aligned_cols=15  Identities=40%  Similarity=0.687  Sum_probs=13.3

Q ss_pred             EEEcCCCCcHHHHHH
Q 028300           18 LLIGDSGVGKSSLLV   32 (211)
Q Consensus        18 ~v~G~~~~GKssli~   32 (211)
                      +++|.+|+|||||-.
T Consensus        18 lffGLSGTGKTTLs~   32 (318)
T d1j3ba1          18 VFFGLSGTGKTTLST   32 (318)
T ss_dssp             EEEECTTSCHHHHTC
T ss_pred             EEEccCCCCcccccc
Confidence            889999999999753

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=86.60  E-value=0.15  Score=36.43  Aligned_cols=22  Identities=36%  Similarity=0.614  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q 028300           16 KILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~   37 (211)
                      |++++|++|+|||+|+..+..+
T Consensus        70 r~~If~~~g~GKt~ll~~~~~~   91 (285)
T d2jdia3          70 RELIIGDRQTGKTSIAIDTIIN   91 (285)
T ss_dssp             BCEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEeecCCCCChHHHHHHHHHh
Confidence            7899999999999998877654

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=86.31  E-value=0.24  Score=35.09  Aligned_cols=114  Identities=19%  Similarity=0.217  Sum_probs=56.7

Q ss_pred             EEEEEEeCCChhhhccchh-hhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccE-EEEeecCCCCCCcccC
Q 028300           62 LKLTIWDTAGQERFRTLTS-SYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVK-MLVGNKVDRDSERVVS  139 (211)
Q Consensus        62 ~~~~l~D~~g~~~~~~~~~-~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~-viv~nK~Dl~~~~~v~  139 (211)
                      +.+.++|+|+......... .....+|.++++.. .+..++..+.. ....+.......+.++ .+|.|+.+....    
T Consensus       119 ~D~iiiD~pp~~~~~~~~~~~~~~~a~~vlv~~~-~~~~s~~~~~~-~~~~i~~~~~~~~~~~~gvv~n~~~~~~~----  192 (289)
T d2afhe1         119 LDFVFYDVLGDVVCGGFAMPIRENKAQEIYIVCS-GEMMAMYAANN-ISKGIVKYANSGSVRLGGLICNSRNTDRE----  192 (289)
T ss_dssp             CSEEEEEEECSSCCTTTTHHHHTTCCCEEEEEEC-SSHHHHHHHHH-HHHHHHHHHTTSCCEEEEEEEECCCCTTH----
T ss_pred             CCeEeeccCCccCHHHHHHHHHhhccceeecccc-hhHHHHHHHHH-HHHHHHhhhhcccccccceeehhhcchhh----
Confidence            4567888876432222111 12234566655544 44555666555 4444433323344444 478898874322    


Q ss_pred             HHHHHHHHHHcCCeEEEe---------eccC---------CCcHHHHHHHHHHHHHhccc
Q 028300          140 REEGIALAKEHGSLFLEC---------SAKT---------RENVEQCFEQLALKIMEVPS  181 (211)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~---------Sa~~---------~~gv~~l~~~i~~~~~~~~~  181 (211)
                      .+....+...++.+++.+         +...         +....+-|..|.+.+.+...
T Consensus       193 ~~~~~~~~~~~g~~vl~~IP~~~~v~eA~~~g~pv~~~~p~S~~a~~y~~LA~ei~e~~~  252 (289)
T d2afhe1         193 DELIIALANKLGTQMIHFVPRDNVVQRAEIRRMTVIEYDPKAKQADEYRALARKVVDNKL  252 (289)
T ss_dssp             HHHHHHHHHHHTSCEEEEECCCHHHHHHHHTTSCHHHHCTTSHHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHcCCeEEEEEeccHHHHHHHHcCCceEEECcCCHHHHHHHHHHHHHHcCCC
Confidence            223445555666665442         1111         22333456777777776554

>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=85.92  E-value=0.16  Score=36.71  Aligned_cols=15  Identities=40%  Similarity=0.689  Sum_probs=13.4

Q ss_pred             EEEcCCCCcHHHHHH
Q 028300           18 LLIGDSGVGKSSLLV   32 (211)
Q Consensus        18 ~v~G~~~~GKssli~   32 (211)
                      +++|.+|+|||||-.
T Consensus        18 lfFGLSGTGKTTLs~   32 (323)
T d1ii2a1          18 VFFGLSGTGKTTLSA   32 (323)
T ss_dssp             EEECCTTSSHHHHHC
T ss_pred             EEEccCCCCccccee
Confidence            599999999999973

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=85.62  E-value=0.32  Score=32.57  Aligned_cols=24  Identities=13%  Similarity=0.111  Sum_probs=20.9

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhh
Q 028300           13 LSFKILLIGDSGVGKSSLLVSFIS   36 (211)
Q Consensus        13 ~~~~I~v~G~~~~GKssli~~l~~   36 (211)
                      ....+++.|++|+|||+++..+..
T Consensus        14 ~~~~~l~~G~~g~gk~~~a~~l~~   37 (198)
T d2gnoa2          14 EGISILINGEDLSYPREVSLELPE   37 (198)
T ss_dssp             SSEEEEEECSSSSHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHH
Confidence            356899999999999999998875

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=85.06  E-value=0.28  Score=34.64  Aligned_cols=22  Identities=27%  Similarity=0.463  Sum_probs=16.9

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHh
Q 028300           14 SFKILLIGDSGVGKSSLLVSFI   35 (211)
Q Consensus        14 ~~~I~v~G~~~~GKssli~~l~   35 (211)
                      +--|.+.|.-|+||||+.-.+.
T Consensus         8 p~~i~~sGKGGVGKTTvaa~lA   29 (296)
T d1ihua1           8 PPYLFFTGKGGVGKTSISCATA   29 (296)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHH
T ss_pred             CeEEEEECCCcChHHHHHHHHH
Confidence            3356788999999999766553

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=84.74  E-value=0.3  Score=34.28  Aligned_cols=22  Identities=23%  Similarity=0.655  Sum_probs=15.6

Q ss_pred             eeEEEE-EcCCCCcHHHHHHHHh
Q 028300           14 SFKILL-IGDSGVGKSSLLVSFI   35 (211)
Q Consensus        14 ~~~I~v-~G~~~~GKssli~~l~   35 (211)
                      -.+|++ .|.-|+||||+.-.|.
T Consensus        19 ~~~iii~sGKGGVGKTT~a~nLA   41 (279)
T d1ihua2          19 EHGLIMLMGKGGVGKTTMAAAIA   41 (279)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHH
Confidence            344554 4999999999865553

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=84.66  E-value=0.21  Score=30.94  Aligned_cols=22  Identities=32%  Similarity=0.457  Sum_probs=16.3

Q ss_pred             eeEE-EEEcCCCCcHHHHHHHHh
Q 028300           14 SFKI-LLIGDSGVGKSSLLVSFI   35 (211)
Q Consensus        14 ~~~I-~v~G~~~~GKssli~~l~   35 (211)
                      +.++ ++.++.|+|||.++-.+.
T Consensus         7 ~~~~~ll~apTGsGKT~~~~~~~   29 (136)
T d1a1va1           7 SFQVAHLHAPTGSGKSTKVPAAY   29 (136)
T ss_dssp             SCEEEEEECCTTSCTTTHHHHHH
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHH
Confidence            3344 567999999999886554

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=83.60  E-value=0.21  Score=35.44  Aligned_cols=22  Identities=32%  Similarity=0.531  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q 028300           16 KILLIGDSGVGKSSLLVSFISS   37 (211)
Q Consensus        16 ~I~v~G~~~~GKssli~~l~~~   37 (211)
                      |++|+|++|+|||+|+..+...
T Consensus        69 r~~Ifg~~g~GKt~l~~~~~~~   90 (276)
T d1fx0a3          69 RELIIGDRQTGKTAVATDTILN   90 (276)
T ss_dssp             BCBEEESSSSSHHHHHHHHHHT
T ss_pred             eEeeccCCCCChHHHHHHHHhh
Confidence            6889999999999998876544

>d1zpda1 c.31.1.3 (A:188-362) Pyruvate decarboxylase {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: DHS-like NAD/FAD-binding domain
superfamily: DHS-like NAD/FAD-binding domain
family: Pyruvate oxidase and decarboxylase, middle domain
domain: Pyruvate decarboxylase
species: Zymomonas mobilis [TaxId: 542]

Probab=82.51  E-value=3.3  Score=26.60  Aligned_cols=55  Identities=20%  Similarity=0.301  Sum_probs=39.6

Q ss_pred             CChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEee
Q 028300           96 TRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECS  158 (211)
Q Consensus        96 ~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~S  158 (211)
                      +|..+++.........+    ...+.|+++++.......    ..++...+++..++|++.+.
T Consensus         3 sd~~~l~~~v~~~~~~l----~~AkrPvIi~G~g~~~~~----a~~~l~~lae~~~~Pv~tt~   57 (175)
T d1zpda1           3 SDEASLNAAVDETLKFI----ANRDKVAVLVGSKLRAAG----AEEAAVKFTDALGGAVATMA   57 (175)
T ss_dssp             CCHHHHHHHHHHHHHHH----TTCSCEEEEECTTTTTTT----CHHHHHHHHHHHCCCEEEEG
T ss_pred             CChHHHHHHHHHHHHHH----HcCCCEEEEECcCccccc----hHHHHHHHHHhhceeEEecc
Confidence            55666666655444444    456899999999997532    45677889999999987664

>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Ureaplasma urealyticum [TaxId: 2130]

Probab=81.60  E-value=0.47  Score=29.78  Aligned_cols=18  Identities=22%  Similarity=0.379  Sum_probs=14.0

Q ss_pred             EEEcCCCCcHHH-HHHHHh
Q 028300           18 LLIGDSGVGKSS-LLVSFI   35 (211)
Q Consensus        18 ~v~G~~~~GKss-li~~l~   35 (211)
                      +++||=.||||| |++++-
T Consensus         6 ~i~GpMfsGKTteLi~~~~   24 (139)
T d2b8ta1           6 FITGPMFAGKTAELIRRLH   24 (139)
T ss_dssp             EEECSTTSCHHHHHHHHHH
T ss_pred             EEEccccCHHHHHHHHHHH
Confidence            467999999999 555543

>d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal domain {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=80.21  E-value=3.1  Score=25.85  Aligned_cols=18  Identities=33%  Similarity=0.451  Sum_probs=14.4

Q ss_pred             EEEcCCCCcHHHHHHHHh
Q 028300           18 LLIGDSGVGKSSLLVSFI   35 (211)
Q Consensus        18 ~v~G~~~~GKssli~~l~   35 (211)
                      +++||=.|||||-+-+..
T Consensus        11 lI~GpMfSGKTteLi~~~   28 (141)
T d1xx6a1          11 VIVGPMYSGKSEELIRRI   28 (141)
T ss_dssp             EEECSTTSSHHHHHHHHH
T ss_pred             EEEeccccHHHHHHHHHH
Confidence            458999999999766555