Citrus Sinensis ID: 028327

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210
Protein Sequence
MATTSINMASAKFSMLGWIGGKRELKKKRVISISAQQQAEVEESRSKQVKENENQAQVKQQQTPLRPVEPQTNVRSKNMSREYGGQWLSCATRHVRIYAAYIDPETWEFDQTQMDKLTLILDPTKEFVWTDESCNKVFAYFQELVDHYEGALLTEYTLRLIGSDLEHYIRKLLYDGEIKYNMDARVLNFSMGKPRIMFNNNELPTQDVAQ
Secondary Structure (PSIPRED)
cccccccccccHHHHccccccccccccEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccEEEEEEEEEccccccccccccccEEEEccccccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHcccHHHHHHHHHHccccccccccccccccccccEEEEcccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHcHHHHHHHHcccccccccccEEEEEEcHHHccEEEHcccccccHHHHHHHHHccccccccccccccEccccccHHccccEEcccccEEEEEEEEEccccEEEccccccEEEEEEcccccccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHcHHHHHHHHHHHHcccEEEccccEEEEccccccEEEEccccccHHHccc
Coil and Loop (DISEMBL)
MATTSINMASAKFSMLgwiggkrelKKKRVISISAQQQAEVEESRSKQVKENENQAQVKqqqtplrpvepqtnvrsknmsreyggqwlSCATRHVRIYaayidpetwefdqtqMDKLTlildptkefvwtdesCNKVFAYFQELVDHYEGALLTEYTLRLIGSDLEHYIRKLLYDGEIKYNMDARVlnfsmgkprimfnnnelptqdvaq
Flexible Loop (DISEMBL)
mattsinmasakfsmlgwiggkreLKKKRVISISaqqqaeveesrskqvkenenqaqvkqqqtplrpvepqtnvrsknmsreyggqwLSCATRHVRIYAAYIDPETWEFDQTQMDKLTLILDPTKEFVWTDESCNKVFAYFQELVDHYEGALLTEYTLRLIGSDLEHYIRKLLYDGEIKYNMDARVLNFSmgkprimfnnnelptqdvaq
Low Complexity Region (SEG)
MATTSINMASAKFSMLGWIGGKRELKKKRVISISAQQQAEVEESRSKQVKENENQAQVKQQQTPLRPVEPQTNVRSKNMSREYGGQWLSCATRHVRIYAAYIDPETWEFDQTQMDKLTLILDPTKEFVWTDESCNKVFAYFQELVDHYEGALLTEYTLRLIGSDLEHYIRKLLYDGEIKYNMDARVLNFSMGKPRIMFNNNELPTQDVAQ
Disordered region (IsUnstruct)
************FSMLGWIGGK************************************************************YGGQWLSCATRHVRIYAAYIDPETWEFDQTQMDKLTLILDPTKEFVWTDESCNKVFAYFQELVDHYEGALLTEYTLRLIGSDLEHYIRKLLYDGEIKYNMDARVLNFSMGKPRIMF************
Disordered Region (DISOPRED)
*********SA*************************************************************************GQWLSCATRHVRIYAAYIDPETWEFDQTQMDKLTLILDPTKEFVWTDESCNKVFAYFQELVDHYEGALLTEYTLRLIGSDLEHYIRKLLYDGEIKYNMDARVLNFSMGKPRIMFN***********
Disordered Region (DISEMBL)
MATTSINMASAKFSMLGWIGGKRELKKKRVI******************************************VRSKNMSREYGGQWLSCATRHVRIYAAYIDPETWEFDQTQMDKLTLILDPTKEFVWTDESCNKVFAYFQELVDHYEGALLTEYTLRLIGSDLEHYIRKLLYDGEIKYNMDARVLNFSMGKPRIMFNNNELPTQDVAQ
Disordered Region (DISPRO)
****************GW*GGKRELKKKRVISISAQQQAEVEESRS*******************RPVEPQTNV**KNMSREYGGQWLSCATRHVRIYAAYIDPETWEFDQTQMDKLTLILDPTKEFVWTDESCNKVFAYFQELVDHYEGALLTEYTLRLIGSDLEHYIRKLLYDGEIKYNMDARVLNFSMGKPRIMFNNNELP******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MATTSINMASAKFSMLGWIGGKRELKKKRVISISAQQQAEVEESRSKQVKENENQAQVKQQQTPLRPVEPQTNVRSKNMSREYGGQWLSCATRHVRIYAAYIDPETWEFDQTQMDKLTLILDPTKEFVWTDESCNKVFAYFQELVDHYEGALLTEYTLRLIGSDLEHYIRKLLYDGEIKYNMDARVLNFSMGKPRIMFNNNELPTQDVAQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	210	2.2.26 [Sep-21-2011]
A7NVJ4	208	NAD(P)H-quinone oxidoredu	yes	no	0.961	0.971	0.786	2e-89
A9PJQ8	203	NAD(P)H-quinone oxidoredu	N/A	no	0.938	0.970	0.776	8e-89
Q2V2S7	217	NAD(P)H-quinone oxidoredu	yes	no	0.838	0.811	0.683	2e-70
Q7FB12	220	NAD(P)H-quinone oxidoredu	yes	no	0.738	0.704	0.716	6e-64
A2XVZ1	220	NAD(P)H-quinone oxidoredu	N/A	no	0.738	0.704	0.716	6e-64
A9THA7	204	NAD(P)H-quinone oxidoredu	N/A	no	0.628	0.647	0.666	2e-47
Q7NKF6	119	NAD(P)H-quinone oxidoredu	yes	no	0.504	0.890	0.532	1e-25
B7KFF4	119	NAD(P)H-quinone oxidoredu	yes	no	0.5	0.882	0.536	1e-24
Q46HM9	115	NAD(P)H-quinone oxidoredu	yes	no	0.5	0.913	0.518	3e-24
Q2JNM8	121	NAD(P)H-quinone oxidoredu	yes	no	0.509	0.884	0.513	4e-24

>sp|A7NVJ4|NDHM_VITVI NAD(P)H-quinone oxidoreductase subunit M, chloroplastic OS=Vitis vinifera GN=ndhM PE=2 SV=1

 Score =  328 bits (840), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 162/206 (78%), Positives = 175/206 (84%), Gaps = 4/206 (1%)

Query: 1   MATTSINMASAKFSMLGWIGGKRELKKKRVISISAQQQAEVEESRSKQVKENENQAQVKQ 60
           MA TS   A  KFSMLGWIGGKREL+K+R   ISAQQQAEVEES+    +E E Q ++KQ
Sbjct: 1   MAATSSYTACTKFSMLGWIGGKRELRKRRAFFISAQQQAEVEESQQVNAQEEE-QEKMKQ 59

Query: 61  Q--QTPLRPVEPQTNVRSKNMSREYGGQWLSCATRHVRIYAAYIDPETWEFDQTQMDKLT 118
           Q  Q   RPVEPQ NV+SKNMSREYGGQWLS  TRHVRIYAAYIDP T EFDQTQMDKLT
Sbjct: 60  QGKQKLPRPVEPQVNVKSKNMSREYGGQWLSSVTRHVRIYAAYIDPVTCEFDQTQMDKLT 119

Query: 119 LILDPTKEFVWTDESCNKVFAYFQELVDHYEGALLTEYTLRLIGSDLEHYIRKLLYDGEI 178
           LILDPT EFVWT E+CNKV+AYFQELVDHYEGA LTEYTLRLIGSD+EHYIRKLLYDGEI
Sbjct: 120 LILDPTNEFVWTSETCNKVYAYFQELVDHYEGAPLTEYTLRLIGSDIEHYIRKLLYDGEI 179

Query: 179 KYNMDARVLNFSMGKPRIMFNNNELP 204
           KYNM+ARVLNFSMGKPRI+FN+  LP
Sbjct: 180 KYNMNARVLNFSMGKPRILFNDG-LP 204

NDH-1 shuttles electrons from an unknown electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient.
Vitis vinifera (taxid: 29760)
EC: 1EC: .EC: 6EC: .EC: 5EC: .EC: -

>sp|A9PJQ8|NDHM_POPJC NAD(P)H-quinone oxidoreductase subunit M, chloroplastic OS=Populus jackii GN=ndhM PE=2 SV=1

 Score =  326 bits (835), Expect = 8e-89,   Method: Compositional matrix adjust.
 Identities = 156/201 (77%), Positives = 174/201 (86%), Gaps = 4/201 (1%)

Query: 1   MATTSINMASAKFSMLGWIGGKRELKKKRVISISAQQQAEVEESRSKQVKENENQAQVKQ 60
           MA +S  MA AKFSMLGW+GG+RELK +RVIS+S Q+QAEV+ES+    +E E   +VKQ
Sbjct: 1   MAASSSYMACAKFSMLGWLGGRRELKMRRVISVSPQEQAEVQESQEVNAQEEE---KVKQ 57

Query: 61  QQTPLRPVEPQTNVRSKNMSREYGGQWLSCATRHVRIYAAYIDPETWEFDQTQMDKLTLI 120
              P RPVEPQ NV+SKNM REYGGQWLS  TRHVRIYAAYIDPET EFDQTQ DKLTLI
Sbjct: 58  PVQP-RPVEPQVNVKSKNMGREYGGQWLSSVTRHVRIYAAYIDPETCEFDQTQTDKLTLI 116

Query: 121 LDPTKEFVWTDESCNKVFAYFQELVDHYEGALLTEYTLRLIGSDLEHYIRKLLYDGEIKY 180
           LDPT EFVWTDE+C KV++YFQELVDHYEGA LTEYTLRLIGSD+EHYIRKLLYDGEIKY
Sbjct: 117 LDPTDEFVWTDETCYKVYSYFQELVDHYEGAPLTEYTLRLIGSDIEHYIRKLLYDGEIKY 176

Query: 181 NMDARVLNFSMGKPRIMFNNN 201
           NM+ARVLNFSMGKPRI+FNN+
Sbjct: 177 NMNARVLNFSMGKPRILFNND 197

NDH-1 shuttles electrons from an unknown electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient.

Populus jackii (taxid: 640484)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: -

>sp|Q2V2S7|NDHM_ARATH NAD(P)H-quinone oxidoreductase subunit M, chloroplastic OS=Arabidopsis thaliana GN=ndhM PE=2 SV=1

 Score =  265 bits (677), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 121/177 (68%), Positives = 149/177 (84%), Gaps = 1/177 (0%)

Query: 27  KKRVISISAQQQAEVEESRSKQVKENENQAQVKQQQTPLRPVEPQTNVRSKNMSREYGGQ 86
           +K  +  + +Q + +E   ++ +KE ++  ++K+Q TPLRPVE Q NV+SK M  ++GGQ
Sbjct: 30  QKAFVVTNPEQDSTLEVQETETLKEEQSTEKMKKQPTPLRPVEKQLNVKSKGMG-DFGGQ 88

Query: 87  WLSCATRHVRIYAAYIDPETWEFDQTQMDKLTLILDPTKEFVWTDESCNKVFAYFQELVD 146
           WLS  TRHVRIYAAYIDPET EFDQ+QMDKLTLILDPT+EFVW DESCNKV++YFQELVD
Sbjct: 89  WLSSVTRHVRIYAAYIDPETCEFDQSQMDKLTLILDPTEEFVWDDESCNKVYSYFQELVD 148

Query: 147 HYEGALLTEYTLRLIGSDLEHYIRKLLYDGEIKYNMDARVLNFSMGKPRIMFNNNEL 203
           HYEGA LTEYTLRLIGSD+EHYIRK+L+DGEI+YNMDARVLNFSMGKPR+ FN + +
Sbjct: 149 HYEGAPLTEYTLRLIGSDVEHYIRKMLFDGEIQYNMDARVLNFSMGKPRVQFNTSNI 205

NDH-1 shuttles electrons from an unknown electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: -

>sp|Q7FB12|NDHM_ORYSJ NAD(P)H-quinone oxidoreductase subunit M, chloroplastic OS=Oryza sativa subsp. japonica GN=ndhM PE=2 SV=1

 Score =  243 bits (621), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 111/155 (71%), Positives = 132/155 (85%)

Query: 50  KENENQAQVKQQQTPLRPVEPQTNVRSKNMSREYGGQWLSCATRHVRIYAAYIDPETWEF 109
           +E + + +  ++Q P +P+  Q    SKNMSREYGGQWLSC TRH+RIYAAYI+PET  F
Sbjct: 63  EEEQRRERKTRRQGPAQPLPVQPLAESKNMSREYGGQWLSCTTRHIRIYAAYINPETNAF 122

Query: 110 DQTQMDKLTLILDPTKEFVWTDESCNKVFAYFQELVDHYEGALLTEYTLRLIGSDLEHYI 169
           DQTQMDKLTL+LDPT EFVWTDE+C KV+  FQ+LVDHYEGA L+EYTLRLIGSDLEH+I
Sbjct: 123 DQTQMDKLTLLLDPTDEFVWTDETCQKVYDEFQDLVDHYEGAELSEYTLRLIGSDLEHFI 182

Query: 170 RKLLYDGEIKYNMDARVLNFSMGKPRIMFNNNELP 204
           RKLLYDGEIKYNM +RVLNFSMGKPRI FN++++P
Sbjct: 183 RKLLYDGEIKYNMMSRVLNFSMGKPRIKFNSSQIP 217

NDH-1 shuttles electrons from an unknown electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: -

>sp|A2XVZ1|NDHM_ORYSI NAD(P)H-quinone oxidoreductase subunit M, chloroplastic OS=Oryza sativa subsp. indica GN=ndhM PE=2 SV=1

 Score =  243 bits (621), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 111/155 (71%), Positives = 132/155 (85%)

Query: 50  KENENQAQVKQQQTPLRPVEPQTNVRSKNMSREYGGQWLSCATRHVRIYAAYIDPETWEF 109
           +E + + +  ++Q P +P+  Q    SKNMSREYGGQWLSC TRH+RIYAAYI+PET  F
Sbjct: 63  EEEQRRERKTRRQGPAQPLPVQPLAESKNMSREYGGQWLSCTTRHIRIYAAYINPETNAF 122

Query: 110 DQTQMDKLTLILDPTKEFVWTDESCNKVFAYFQELVDHYEGALLTEYTLRLIGSDLEHYI 169
           DQTQMDKLTL+LDPT EFVWTDE+C KV+  FQ+LVDHYEGA L+EYTLRLIGSDLEH+I
Sbjct: 123 DQTQMDKLTLLLDPTDEFVWTDETCQKVYDEFQDLVDHYEGAELSEYTLRLIGSDLEHFI 182

Query: 170 RKLLYDGEIKYNMDARVLNFSMGKPRIMFNNNELP 204
           RKLLYDGEIKYNM +RVLNFSMGKPRI FN++++P
Sbjct: 183 RKLLYDGEIKYNMMSRVLNFSMGKPRIKFNSSQIP 217

NDH-1 shuttles electrons from an unknown electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient.

Oryza sativa subsp. indica (taxid: 39946)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: -

>sp|A9THA7|NDHM_PHYPA NAD(P)H-quinone oxidoreductase subunit M, chloroplastic OS=Physcomitrella patens subsp. patens GN=ndhM PE=2 SV=1

 Score =  189 bits (479), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 88/132 (66%), Positives = 104/132 (78%)

Query: 65  LRPVEPQTNVRSKNMSREYGGQWLSCATRHVRIYAAYIDPETWEFDQTQMDKLTLILDPT 124
           +R  E +   ++K +SRE GGQWLSC TRHVRIYA Y+DPET   DQ+Q+DKLTL+LDP 
Sbjct: 61  VRAEEVKEVTQAKGLSRESGGQWLSCTTRHVRIYAGYVDPETQVMDQSQLDKLTLMLDPD 120

Query: 125 KEFVWTDESCNKVFAYFQELVDHYEGALLTEYTLRLIGSDLEHYIRKLLYDGEIKYNMDA 184
            EF W +E   KV+  ++ELV+ Y GA LTEYTLRLIGSDLEHYIRKLL  GE+KYN+D 
Sbjct: 121 NEFEWPEEMVEKVYDKYRELVETYAGADLTEYTLRLIGSDLEHYIRKLLLAGELKYNLDC 180

Query: 185 RVLNFSMGKPRI 196
           RVLNFSMGKPRI
Sbjct: 181 RVLNFSMGKPRI 192

NDH-1 shuttles electrons from an unknown electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient.

Physcomitrella patens subsp. patens (taxid: 145481)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: -

>sp|Q7NKF6|NDHM_GLOVI NAD(P)H-quinone oxidoreductase subunit M OS=Gloeobacter violaceus (strain PCC 7421) GN=ndhM PE=3 SV=1

 Score =  116 bits (291), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 58/109 (53%), Positives = 73/109 (66%), Gaps = 3/109 (2%)

Query: 88  LSCATRHVRIYAAYIDPETWEFDQTQMDKLTLILDPTKEFVWTDESCNKVFAYFQELVDH 147
           L   TRHV I+AA I  + +    T   KLTL +DP  EF+W D +  KV++ F  LV  
Sbjct: 2   LKSTTRHVHIFAADIRNDNFIASDT---KLTLDVDPDNEFIWNDPALQKVYSEFDRLVAA 58

Query: 148 YEGALLTEYTLRLIGSDLEHYIRKLLYDGEIKYNMDARVLNFSMGKPRI 196
           Y G  LTEY LR IGSDLE++IR LL  GEI YN+D+RVLNFSMG+P++
Sbjct: 59  YTGLALTEYNLRRIGSDLENFIRGLLQQGEIAYNLDSRVLNFSMGRPQV 107

NDH-1 shuttles electrons from an unknown electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. Cyanobacterial NDH-1 also plays a role in inorganic carbon-concentration.

Gloeobacter violaceus (strain PCC 7421) (taxid: 251221)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: -

>sp|B7KFF4|NDHM_CYAP7 NAD(P)H-quinone oxidoreductase subunit M OS=Cyanothece sp. (strain PCC 7424) GN=ndhM PE=3 SV=1

 Score =  112 bits (281), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 59/110 (53%), Positives = 73/110 (66%), Gaps = 5/110 (4%)

Query: 88  LSCATRHVRIYAAYI-DPETWEFDQTQMDKLTLILDPTKEFVWTDESCNKVFAYFQELVD 146
           L   TRH+RIY A I + E  E D      LTL +DP  EF+W ++S  KV+  F +LV+
Sbjct: 3   LKSTTRHIRIYTAEIQNNELVESDNV----LTLDVDPDNEFLWDEDSLQKVYRKFDDLVE 58

Query: 147 HYEGALLTEYTLRLIGSDLEHYIRKLLYDGEIKYNMDARVLNFSMGKPRI 196
            Y G  LTEY LR IGSDLE +IR LL  GEI YN+D+RVLN+SMG PR+
Sbjct: 59  SYSGEDLTEYNLRRIGSDLELFIRSLLQQGEISYNLDSRVLNYSMGLPRV 108

NDH-1 shuttles electrons from an unknown electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. Cyanobacterial NDH-1 also plays a role in inorganic carbon-concentration.

Cyanothece sp. (strain PCC 7424) (taxid: 65393)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: -

>sp|Q46HM9|NDHM_PROMT NAD(P)H-quinone oxidoreductase subunit M OS=Prochlorococcus marinus (strain NATL2A) GN=ndhM PE=3 SV=1

 Score =  111 bits (278), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 56/108 (51%), Positives = 72/108 (66%), Gaps = 3/108 (2%)

Query: 88  LSCATRHVRIYAAYIDPETWEFDQTQMDKLTLILDPTKEFVWTDESCNKVFAYFQELVDH 147
           L C TRHVRI+ A ++     FD      LTL +DP  EF W+D+S  KV  YF+ELVD 
Sbjct: 6   LKCTTRHVRIFTAVVENNDLIFDNGH---LTLDIDPDNEFSWSDQSIKKVQDYFRELVDF 62

Query: 148 YEGALLTEYTLRLIGSDLEHYIRKLLYDGEIKYNMDARVLNFSMGKPR 195
                L++Y+LR IGS LE +IRKLL DGE+ YN ++RV+N+SMG PR
Sbjct: 63  QADNELSDYSLRKIGSLLEDFIRKLLKDGELSYNPNSRVMNYSMGLPR 110

NDH-1 shuttles electrons from an unknown electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. Cyanobacterial NDH-1 also plays a role in inorganic carbon-concentration.

Prochlorococcus marinus (strain NATL2A) (taxid: 59920)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: -

>sp|Q2JNM8|NDHM_SYNJB NAD(P)H-quinone oxidoreductase subunit M OS=Synechococcus sp. (strain JA-2-3B'a(2-13)) GN=ndhM PE=3 SV=1

 Score =  111 bits (277), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 56/109 (51%), Positives = 69/109 (63%), Gaps = 2/109 (1%)

Query: 88  LSCATRHVRIYAAYIDPETWEFDQTQMDKLTLILDPTKEFVWTDESCNKVFAYFQELVDH 147
           L C TRHV I+A  +  +     +   D  TL +DP  E VWTD +  KV+A F+ELV+ 
Sbjct: 2   LKCTTRHVHIFAGEVTADNNFVPRD--DLFTLDVDPDNELVWTDAALQKVYARFEELVEE 59

Query: 148 YEGALLTEYTLRLIGSDLEHYIRKLLYDGEIKYNMDARVLNFSMGKPRI 196
           Y G  LTEY +R IGSDLEH+IR LL  GEI YN+  R  NFSMG P+I
Sbjct: 60  YRGRDLTEYNIRRIGSDLEHFIRSLLKQGEIAYNLQGRAPNFSMGFPQI 108

NDH-1 shuttles electrons from an unknown electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. Cyanobacterial NDH-1 also plays a role in inorganic carbon-concentration.

Synechococcus sp. (strain JA-2-3B'a(2-13)) (taxid: 321332)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	210
225459675	208	PREDICTED: NAD(P)H-quinone oxidoreductas	0.961	0.971	0.786	1e-87
255558554	209	conserved hypothetical protein [Ricinus	0.957	0.961	0.764	2e-87
209573110	203	RecName: Full=NAD(P)H-quinone oxidoreduc	0.938	0.970	0.776	4e-87
259414645	207	putative NADH dehydrogenase [Olea europa	0.980	0.995	0.711	4e-81
356509365	217	PREDICTED: NAD(P)H-quinone oxidoreductas	1.0	0.967	0.689	6e-78
351723493	218	uncharacterized protein LOC100527195 [Gl	1.0	0.963	0.686	2e-75
449444080	209	PREDICTED: NAD(P)H-quinone oxidoreductas	0.923	0.928	0.693	3e-75
79326435	217	NAD(P)H-quinone oxidoreductase subunit M	0.838	0.811	0.683	8e-69
110742537	201	hypothetical protein [Arabidopsis thalia	0.838	0.875	0.683	1e-68
4467098	673	putative protein [Arabidopsis thaliana]	0.838	0.261	0.590	7e-65

>gi|225459675|ref|XP_002285884.1| PREDICTED: NAD(P)H-quinone oxidoreductase subunit M, chloroplastic [Vitis vinifera] gi|209573123|sp|A7NVJ4.1|NDHM_VITVI RecName: Full=NAD(P)H-quinone oxidoreductase subunit M, chloroplastic; AltName: Full=NAD(P)H dehydrogenase I subunit M; Short=NDH-1 subunit M; Short=NDH-M; Flags: Precursor gi|302141757|emb|CBI18960.3| unnamed protein product [Vitis vinifera]

 Score =  328 bits (840), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 162/206 (78%), Positives = 175/206 (84%), Gaps = 4/206 (1%)

Query: 1   MATTSINMASAKFSMLGWIGGKRELKKKRVISISAQQQAEVEESRSKQVKENENQAQVKQ 60
           MA TS   A  KFSMLGWIGGKREL+K+R   ISAQQQAEVEES+    +E E Q ++KQ
Sbjct: 1   MAATSSYTACTKFSMLGWIGGKRELRKRRAFFISAQQQAEVEESQQVNAQEEE-QEKMKQ 59

Query: 61  Q--QTPLRPVEPQTNVRSKNMSREYGGQWLSCATRHVRIYAAYIDPETWEFDQTQMDKLT 118
           Q  Q   RPVEPQ NV+SKNMSREYGGQWLS  TRHVRIYAAYIDP T EFDQTQMDKLT
Sbjct: 60  QGKQKLPRPVEPQVNVKSKNMSREYGGQWLSSVTRHVRIYAAYIDPVTCEFDQTQMDKLT 119

Query: 119 LILDPTKEFVWTDESCNKVFAYFQELVDHYEGALLTEYTLRLIGSDLEHYIRKLLYDGEI 178
           LILDPT EFVWT E+CNKV+AYFQELVDHYEGA LTEYTLRLIGSD+EHYIRKLLYDGEI
Sbjct: 120 LILDPTNEFVWTSETCNKVYAYFQELVDHYEGAPLTEYTLRLIGSDIEHYIRKLLYDGEI 179

Query: 179 KYNMDARVLNFSMGKPRIMFNNNELP 204
           KYNM+ARVLNFSMGKPRI+FN+  LP
Sbjct: 180 KYNMNARVLNFSMGKPRILFNDG-LP 204

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255558554|ref|XP_002520302.1| conserved hypothetical protein [Ricinus communis] gi|223540521|gb|EEF42088.1| conserved hypothetical protein [Ricinus communis]

 Score =  327 bits (837), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 156/204 (76%), Positives = 175/204 (85%), Gaps = 3/204 (1%)

Query: 1   MATTSINMASAKFSMLGWIGGKRELKKKRVISISAQQQAEVEESRSKQVKENE--NQAQV 58
           MA TS  MAS KFSMLGW+GGK EL KKRV+ ISAQQQAEV+E++    +E +   Q  V
Sbjct: 1   MAATSSYMASTKFSMLGWLGGKGELGKKRVLCISAQQQAEVQETQEVNAQEEQEPKQENV 60

Query: 59  KQQQTPLRPVEPQTNVRSKNMSREYGGQWLSCATRHVRIYAAYIDPETWEFDQTQMDKLT 118
           KQ   P RPVE Q NV+SKN++REYGGQWLS  TRHVRIYAAYIDPETWEFDQTQMDKLT
Sbjct: 61  KQPTQP-RPVEKQVNVKSKNLTREYGGQWLSSVTRHVRIYAAYIDPETWEFDQTQMDKLT 119

Query: 119 LILDPTKEFVWTDESCNKVFAYFQELVDHYEGALLTEYTLRLIGSDLEHYIRKLLYDGEI 178
           L+LDPT EF+WTDE+C KV++YFQELVDHYEGA LTEYTLRLIGSD+EHYIRKLLYDGEI
Sbjct: 120 LLLDPTNEFLWTDETCYKVYSYFQELVDHYEGAPLTEYTLRLIGSDIEHYIRKLLYDGEI 179

Query: 179 KYNMDARVLNFSMGKPRIMFNNNE 202
           KYNM+A VLNFSMGKPRIMFNN++
Sbjct: 180 KYNMNANVLNFSMGKPRIMFNNDD 203

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|209573110|sp|A9PJQ8.1|NDHM_POPJC RecName: Full=NAD(P)H-quinone oxidoreductase subunit M, chloroplastic; AltName: Full=NAD(P)H dehydrogenase I subunit M; Short=NDH-1 subunit M; Short=NDH-M; Flags: Precursor gi|118489619|gb|ABK96611.1| unknown [Populus trichocarpa x Populus deltoides]

 Score =  326 bits (835), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 156/201 (77%), Positives = 174/201 (86%), Gaps = 4/201 (1%)

Query: 1   MATTSINMASAKFSMLGWIGGKRELKKKRVISISAQQQAEVEESRSKQVKENENQAQVKQ 60
           MA +S  MA AKFSMLGW+GG+RELK +RVIS+S Q+QAEV+ES+    +E E   +VKQ
Sbjct: 1   MAASSSYMACAKFSMLGWLGGRRELKMRRVISVSPQEQAEVQESQEVNAQEEE---KVKQ 57

Query: 61  QQTPLRPVEPQTNVRSKNMSREYGGQWLSCATRHVRIYAAYIDPETWEFDQTQMDKLTLI 120
              P RPVEPQ NV+SKNM REYGGQWLS  TRHVRIYAAYIDPET EFDQTQ DKLTLI
Sbjct: 58  PVQP-RPVEPQVNVKSKNMGREYGGQWLSSVTRHVRIYAAYIDPETCEFDQTQTDKLTLI 116

Query: 121 LDPTKEFVWTDESCNKVFAYFQELVDHYEGALLTEYTLRLIGSDLEHYIRKLLYDGEIKY 180
           LDPT EFVWTDE+C KV++YFQELVDHYEGA LTEYTLRLIGSD+EHYIRKLLYDGEIKY
Sbjct: 117 LDPTDEFVWTDETCYKVYSYFQELVDHYEGAPLTEYTLRLIGSDIEHYIRKLLYDGEIKY 176

Query: 181 NMDARVLNFSMGKPRIMFNNN 201
           NM+ARVLNFSMGKPRI+FNN+
Sbjct: 177 NMNARVLNFSMGKPRILFNND 197

Source: Populus trichocarpa x Populus deltoides

Species: Populus trichocarpa x Populus deltoides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|259414645|gb|ACW82414.1| putative NADH dehydrogenase [Olea europaea]

 Score =  306 bits (783), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 148/208 (71%), Positives = 170/208 (81%), Gaps = 2/208 (0%)

Query: 1   MATTSINMASAKFSMLGWIGGKRELKKKRVISISAQQQAEVEESRSKQVKENENQAQVKQ 60
           MA TS  MAS  FSMLGW   K E++KK V S+S+Q  A++EE + K V+  + +   + 
Sbjct: 1   MAATSTCMASTTFSMLGWRSSKSEVRKKSVFSVSSQL-AKIEE-QVKTVEATKEKDTKQH 58

Query: 61  QQTPLRPVEPQTNVRSKNMSREYGGQWLSCATRHVRIYAAYIDPETWEFDQTQMDKLTLI 120
             TPLRP+EPQ NV+SKNM REYGGQWLS AT HVRIYAAYIDPET EF QTQMDKLTLI
Sbjct: 59  ATTPLRPIEPQVNVKSKNMGREYGGQWLSSATIHVRIYAAYIDPETCEFAQTQMDKLTLI 118

Query: 121 LDPTKEFVWTDESCNKVFAYFQELVDHYEGALLTEYTLRLIGSDLEHYIRKLLYDGEIKY 180
           LDPT EFVWTDE+CNKV++YFQELVDHYEGA LTEYTLRLIGSD+EHYIRKLLY+GEI+Y
Sbjct: 119 LDPTDEFVWTDETCNKVYSYFQELVDHYEGAPLTEYTLRLIGSDIEHYIRKLLYEGEIQY 178

Query: 181 NMDARVLNFSMGKPRIMFNNNELPTQDV 208
           NM+AR+LNFSMGKPRI FN N+   QDV
Sbjct: 179 NMNARMLNFSMGKPRIGFNYNDGQIQDV 206

Source: Olea europaea

Species: Olea europaea

Genus: Olea

Family: Oleaceae

Order: Lamiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356509365|ref|XP_003523420.1| PREDICTED: NAD(P)H-quinone oxidoreductase subunit M, chloroplastic-like isoform 1 [Glycine max] gi|356509367|ref|XP_003523421.1| PREDICTED: NAD(P)H-quinone oxidoreductase subunit M, chloroplastic-like isoform 2 [Glycine max]

 Score =  295 bits (756), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 149/216 (68%), Positives = 173/216 (80%), Gaps = 6/216 (2%)

Query: 1   MATTSINMASAKFSMLGWIGGKRELKKKRV-ISISAQQQAEVEESRSKQVKENENQAQV- 58
           MAT+   M S K SMLGW GG+R   + R    +SAQQQ++V+E+ S +V+E + Q Q+ 
Sbjct: 1   MATSCSYMVSTKLSMLGWSGGRRREARSRRAFLVSAQQQSDVKEAESLKVEEEQEQEQMQ 60

Query: 59  ----KQQQTPLRPVEPQTNVRSKNMSREYGGQWLSCATRHVRIYAAYIDPETWEFDQTQM 114
               K + T  RPVEPQ NV+SKNM REYGGQWLSCATRHVRIYAAYIDP T EFDQTQM
Sbjct: 61  TQTPKPKGTTPRPVEPQLNVKSKNMLREYGGQWLSCATRHVRIYAAYIDPVTCEFDQTQM 120

Query: 115 DKLTLILDPTKEFVWTDESCNKVFAYFQELVDHYEGALLTEYTLRLIGSDLEHYIRKLLY 174
           DKLTLILDPT EFVW  E+CN V++YFQELVDHYEGA LTEYTLRLIGSD+EHYIRK+LY
Sbjct: 121 DKLTLILDPTDEFVWNTETCNMVYSYFQELVDHYEGAPLTEYTLRLIGSDIEHYIRKMLY 180

Query: 175 DGEIKYNMDARVLNFSMGKPRIMFNNNELPTQDVAQ 210
           DG IKYNM+ARVLNFSMGKPRIMFNNN++  +D  +
Sbjct: 181 DGAIKYNMNARVLNFSMGKPRIMFNNNDIQPEDATE 216

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351723493|ref|NP_001236257.1| uncharacterized protein LOC100527195 [Glycine max] gi|255631760|gb|ACU16247.1| unknown [Glycine max]

 Score =  287 bits (734), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 149/217 (68%), Positives = 172/217 (79%), Gaps = 7/217 (3%)

Query: 1   MATTSINMASAKFSMLGWIGGKRELKKKRV-ISISAQQQAEVEESRSKQVKENENQAQVK 59
           MAT+   M S K SMLGW GG+R   + R    +SAQQQ++V+E+ S +V E E + +  
Sbjct: 1   MATSCSYMVSTKLSMLGWSGGRRREARNRRAFLVSAQQQSDVQEAESVKVVEEEKEQEQV 60

Query: 60  QQQTP------LRPVEPQTNVRSKNMSREYGGQWLSCATRHVRIYAAYIDPETWEFDQTQ 113
           Q QTP       RPVEPQ NV+SKNM REYGGQWLSCATRHVRIYAAYIDP T EFDQTQ
Sbjct: 61  QTQTPKPKGTTPRPVEPQLNVKSKNMLREYGGQWLSCATRHVRIYAAYIDPVTCEFDQTQ 120

Query: 114 MDKLTLILDPTKEFVWTDESCNKVFAYFQELVDHYEGALLTEYTLRLIGSDLEHYIRKLL 173
           MDKLTLILDPT EFVW  E+CN V++YFQELVDHYEGA LTEYTLRLIGSD+EHYIRK+L
Sbjct: 121 MDKLTLILDPTDEFVWNPETCNMVYSYFQELVDHYEGAPLTEYTLRLIGSDIEHYIRKML 180

Query: 174 YDGEIKYNMDARVLNFSMGKPRIMFNNNELPTQDVAQ 210
           YDG IKYNM+ARVLNFSMGKP+IMFNNN++  +D  +
Sbjct: 181 YDGVIKYNMNARVLNFSMGKPKIMFNNNDIQPEDAIE 217

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449444080|ref|XP_004139803.1| PREDICTED: NAD(P)H-quinone oxidoreductase subunit M, chloroplastic-like [Cucumis sativus] gi|449492622|ref|XP_004159051.1| PREDICTED: NAD(P)H-quinone oxidoreductase subunit M, chloroplastic-like [Cucumis sativus]

 Score =  286 bits (733), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 136/196 (69%), Positives = 156/196 (79%), Gaps = 2/196 (1%)

Query: 13  FSMLGWIGGKRELKKKRVISISAQQQAEVEESRSKQVKENENQAQVKQQQTPLRPVEPQT 72
           FSM+GW  G +  K      ISAQ     E+ ++    + E+Q Q K + +PLRPVE Q 
Sbjct: 13  FSMVGWKNGIQNTKHTLRFPISAQINEAAEQLKAGD--QEEDQEQAKPKPSPLRPVEVQQ 70

Query: 73  NVRSKNMSREYGGQWLSCATRHVRIYAAYIDPETWEFDQTQMDKLTLILDPTKEFVWTDE 132
           NV+SKNM REYGGQWLS  TRHVRIYAAYIDP T EFDQTQMDKLTL+LDP+ EF+W  E
Sbjct: 71  NVKSKNMGREYGGQWLSSVTRHVRIYAAYIDPITCEFDQTQMDKLTLLLDPSNEFLWNPE 130

Query: 133 SCNKVFAYFQELVDHYEGALLTEYTLRLIGSDLEHYIRKLLYDGEIKYNMDARVLNFSMG 192
           +CNKV+AYFQELVDHYEGA LTEYTLRLIGSD+EHYIRK+LYDGEIKYNM+ARVLNFSMG
Sbjct: 131 TCNKVYAYFQELVDHYEGAPLTEYTLRLIGSDIEHYIRKMLYDGEIKYNMNARVLNFSMG 190

Query: 193 KPRIMFNNNELPTQDV 208
           KPRIMFN N+LP  D+
Sbjct: 191 KPRIMFNANDLPQDDL 206

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|79326435|ref|NP_001031804.1| NAD(P)H-quinone oxidoreductase subunit M [Arabidopsis thaliana] gi|122209152|sp|Q2V2S7.1|NDHM_ARATH RecName: Full=NAD(P)H-quinone oxidoreductase subunit M, chloroplastic; AltName: Full=NAD(P)H dehydrogenase I subunit M; Short=NDH-1 subunit M; Short=NDH-M; Flags: Precursor gi|332661454|gb|AEE86854.1| NAD(P)H-quinone oxidoreductase subunit M [Arabidopsis thaliana]

 Score =  265 bits (677), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 121/177 (68%), Positives = 149/177 (84%), Gaps = 1/177 (0%)

Query: 27  KKRVISISAQQQAEVEESRSKQVKENENQAQVKQQQTPLRPVEPQTNVRSKNMSREYGGQ 86
           +K  +  + +Q + +E   ++ +KE ++  ++K+Q TPLRPVE Q NV+SK M  ++GGQ
Sbjct: 30  QKAFVVTNPEQDSTLEVQETETLKEEQSTEKMKKQPTPLRPVEKQLNVKSKGMG-DFGGQ 88

Query: 87  WLSCATRHVRIYAAYIDPETWEFDQTQMDKLTLILDPTKEFVWTDESCNKVFAYFQELVD 146
           WLS  TRHVRIYAAYIDPET EFDQ+QMDKLTLILDPT+EFVW DESCNKV++YFQELVD
Sbjct: 89  WLSSVTRHVRIYAAYIDPETCEFDQSQMDKLTLILDPTEEFVWDDESCNKVYSYFQELVD 148

Query: 147 HYEGALLTEYTLRLIGSDLEHYIRKLLYDGEIKYNMDARVLNFSMGKPRIMFNNNEL 203
           HYEGA LTEYTLRLIGSD+EHYIRK+L+DGEI+YNMDARVLNFSMGKPR+ FN + +
Sbjct: 149 HYEGAPLTEYTLRLIGSDVEHYIRKMLFDGEIQYNMDARVLNFSMGKPRVQFNTSNI 205

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|110742537|dbj|BAE99184.1| hypothetical protein [Arabidopsis thaliana]

 Score =  265 bits (676), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 121/177 (68%), Positives = 149/177 (84%), Gaps = 1/177 (0%)

Query: 27  KKRVISISAQQQAEVEESRSKQVKENENQAQVKQQQTPLRPVEPQTNVRSKNMSREYGGQ 86
           +K  +  + +Q + +E   ++ +KE ++  ++K+Q TPLRPVE Q NV+SK M  ++GGQ
Sbjct: 14  QKAFVVTNPEQDSTLEVQETETLKEEQSTEKMKKQPTPLRPVEKQLNVKSKGMG-DFGGQ 72

Query: 87  WLSCATRHVRIYAAYIDPETWEFDQTQMDKLTLILDPTKEFVWTDESCNKVFAYFQELVD 146
           WLS  TRHVRIYAAYIDPET EFDQ+QMDKLTLILDPT+EFVW DESCNKV++YFQELVD
Sbjct: 73  WLSSVTRHVRIYAAYIDPETCEFDQSQMDKLTLILDPTEEFVWDDESCNKVYSYFQELVD 132

Query: 147 HYEGALLTEYTLRLIGSDLEHYIRKLLYDGEIKYNMDARVLNFSMGKPRIMFNNNEL 203
           HYEGA LTEYTLRLIGSD+EHYIRK+L+DGEI+YNMDARVLNFSMGKPR+ FN + +
Sbjct: 133 HYEGAPLTEYTLRLIGSDVEHYIRKMLFDGEIQYNMDARVLNFSMGKPRVQFNTSNI 189

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|4467098|emb|CAB37532.1| putative protein [Arabidopsis thaliana] gi|7270775|emb|CAB80457.1| putative protein [Arabidopsis thaliana]

 Score =  252 bits (643), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 121/205 (59%), Positives = 149/205 (72%), Gaps = 29/205 (14%)

Query: 27  KKRVISISAQQQAEVEESRSKQVKENENQAQVKQQQTPLRPVEPQTNVRSKNMSREYGGQ 86
           +K  +  + +Q + +E   ++ +KE ++  ++K+Q TPLRPVE Q NV+SK M  ++GGQ
Sbjct: 30  QKAFVVTNPEQDSTLEVQETETLKEEQSTEKMKKQPTPLRPVEKQLNVKSKGMG-DFGGQ 88

Query: 87  WLSCATRHVRIYAAYIDPETWEFDQTQMDKLTLILDPTKEFVWTDESCNKVFAYFQELVD 146
           WLS  TRHVRIYAAYIDPET EFDQ+QMDKLTLILDPT+EFVW DESCNKV++YFQELVD
Sbjct: 89  WLSSVTRHVRIYAAYIDPETCEFDQSQMDKLTLILDPTEEFVWDDESCNKVYSYFQELVD 148

Query: 147 HYE----------------------------GALLTEYTLRLIGSDLEHYIRKLLYDGEI 178
           HYE                            GA LTEYTLRLIGSD+EHYIRK+L+DGEI
Sbjct: 149 HYEVTITINERNIHLKVRLISRRPYNIVFEQGAPLTEYTLRLIGSDVEHYIRKMLFDGEI 208

Query: 179 KYNMDARVLNFSMGKPRIMFNNNEL 203
           +YNMDARVLNFSMGKPR+ FN + +
Sbjct: 209 QYNMDARVLNFSMGKPRVQFNTSNI 233

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	210
TAIR|locus:1009023311	217	NdhM "NADH dehydrogenase-like	0.838	0.811	0.683	1.1e-64

TAIR|locus:1009023311 NdhM "NADH dehydrogenase-like complex M" [Arabidopsis thaliana (taxid:3702)]

 Score = 659 (237.0 bits), Expect = 1.1e-64, P = 1.1e-64
 Identities = 121/177 (68%), Positives = 149/177 (84%)

Query:    27 KKRVISISAQQQAEVEESRSKQVKENENQAQVKQQQTPLRPVEPQTNVRSKNMSREYGGQ 86
             +K  +  + +Q + +E   ++ +KE ++  ++K+Q TPLRPVE Q NV+SK M  ++GGQ
Sbjct:    30 QKAFVVTNPEQDSTLEVQETETLKEEQSTEKMKKQPTPLRPVEKQLNVKSKGMG-DFGGQ 88

Query:    87 WLSCATRHVRIYAAYIDPETWEFDQTQMDKLTLILDPTKEFVWTDESCNKVFAYFQELVD 146
             WLS  TRHVRIYAAYIDPET EFDQ+QMDKLTLILDPT+EFVW DESCNKV++YFQELVD
Sbjct:    89 WLSSVTRHVRIYAAYIDPETCEFDQSQMDKLTLILDPTEEFVWDDESCNKVYSYFQELVD 148

Query:   147 HYEGALLTEYTLRLIGSDLEHYIRKLLYDGEIKYNMDARVLNFSMGKPRIMFNNNEL 203
             HYEGA LTEYTLRLIGSD+EHYIRK+L+DGEI+YNMDARVLNFSMGKPR+ FN + +
Sbjct:   149 HYEGAPLTEYTLRLIGSDVEHYIRKMLFDGEIQYNMDARVLNFSMGKPRVQFNTSNI 205


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.316   0.130   0.378    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      210       210   0.00080  112 3  11 22  0.38    33
                                                     31  0.48    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  611 (65 KB)
  Total size of DFA:  184 KB (2106 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  24.66u 0.12s 24.78t   Elapsed:  00:00:02
  Total cpu time:  24.66u 0.12s 24.78t   Elapsed:  00:00:02
  Start:  Fri May 10 14:17:49 2013   End:  Fri May 10 14:17:51 2013

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016655 "oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009535 "chloroplast thylakoid membrane" evidence=TAS

GO:0010258 "NADH dehydrogenase complex (plastoquinone) assembly" evidence=IMP

GO:0010598 "NAD(P)H dehydrogenase complex (plastoquinone)" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
A2XVZ1	NDHM_ORYSI	1, ., 6, ., 5, ., -	0.7161	0.7380	0.7045	N/A	no
A7NVJ4	NDHM_VITVI	1, ., 6, ., 5, ., -	0.7864	0.9619	0.9711	yes	no
Q7FB12	NDHM_ORYSJ	1, ., 6, ., 5, ., -	0.7161	0.7380	0.7045	yes	no
Q2V2S7	NDHM_ARATH	1, ., 6, ., 5, ., -	0.6836	0.8380	0.8110	yes	no
A9PJQ8	NDHM_POPJC	1, ., 6, ., 5, ., -	0.7761	0.9380	0.9704	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.6.5	0.691

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	ndhM	SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence;; NDH-1 shuttles electrons from an unknown electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient (By similarity) (208 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00023910001	SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (216 aa)			•				•		0.829
	ndhH	SubName- Full=Chromosome chr10 scaffold_179, whole genome shotgun sequence;; NDH shuttles elect [...] (372 aa)					•		•		0.819
	GSVIVG00005655001	SubName- Full=Putative uncharacterized protein (Chromosome undetermined scaffold_155, whole gen [...] (254 aa)			•		•		•		0.816
	PsbP2	SubName- Full=Chromosome chr13 scaffold_17, whole genome shotgun sequence; (238 aa)			•				•		0.739
	ndhJ	NADH dehydrogenase subunit J ; NDH shuttles electrons from NAD(P)H-plastoquinone, via FMN and i [...] (158 aa)					•		•		0.727
	GSVIVG00018549001	SubName- Full=Chromosome chr13 scaffold_17, whole genome shotgun sequence; (235 aa)			•				•		0.616
	GSVIVG00038032001	SubName- Full=Chromosome chr14 scaffold_9, whole genome shotgun sequence; (158 aa)			•				•		0.616
	GSVIVG00025097001	SubName- Full=Putative uncharacterized protein (Chromosome chr4 scaffold_32, whole genome shotg [...] (221 aa)			•				•		0.574
	psaA	SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence;; PsaA and psaB bind P7 [...] (307 aa)			•				•		0.559
	GSVIVG00017440001	SubName- Full=Chromosome chr6 scaffold_15, whole genome shotgun sequence; (113 aa)			•		•				0.557

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	210
pfam10664	108	pfam10664, NdhM, Cyanobacterial and plastid NDH-1	1e-58

>gnl|CDD|151170 pfam10664, NdhM, Cyanobacterial and plastid NDH-1 subunit M

 Score =  179 bits (457), Expect = 1e-58
 Identities = 59/109 (54%), Positives = 71/109 (65%), Gaps = 3/109 (2%)

Query: 88  LSCATRHVRIYAAYIDPETWEFDQTQMDKLTLILDPTKEFVWTDESCNKVFAYFQELVDH 147
           L   TRHVRI+ A ++           DKLTL LDP  EFVW D +  KV+  F ELV+ 
Sbjct: 1   LKSTTRHVRIFTAEVE-NNELVPDD--DKLTLDLDPDNEFVWNDAALQKVYQRFDELVES 57

Query: 148 YEGALLTEYTLRLIGSDLEHYIRKLLYDGEIKYNMDARVLNFSMGKPRI 196
           Y G  L++Y LR IGSDLEH+IR LL  GEI YN+D+RVLN+SMG PR 
Sbjct: 58  YAGEELSDYNLRRIGSDLEHFIRSLLQAGEISYNLDSRVLNYSMGLPRT 106

The proton-pumping NADH:ubiquinone oxidoreductase catalyzes the electron transfer from NADH to ubiquinone linked with proton translocation across the membrane. It is the largest, most complex and least understood of the respiratory chain enzymes and is referred to as Complex I. The subunit composition of the enzyme varies between groups of organisms. Complex I originating from mammalian mitochondria contains 45 different proteins, whereas in bacteria, the corresponding complex NDH-1 consists of 14 different polypeptides. Homologues of these 14 proteins are found among subunits of the mitochondrial complex I, and therefore bacterial NDH-1 might be considered a model proton-pumping NADH dehydrogenase with a minimal set of subunits. Escherichia coli NDH-1 readily disintegrates into 3 sub-complexes: a water-soluble NADH dehydrogenase fragment (NuoE, -F, and -G),the connecting fragment (NuoB, -C, -D, and -I), and the membrane fragment (NuoA, -H, -J, -K, -L, -M, -N). In cyanobacteria and their descendants, the chloroplasts of green plants, the subunit composition of NDH-1 remains obscure. The genes for eleven subunits NdhA-NdhK, homologous to the NuoA-NuoD and NuoH-NuoN of the E. coli complex, have been found in the genome of Synechocystis sp. PCC 6803 which has a family of 6 ndhD genes and a family of 3 ndhF genes. Two reported multisubunit complexes, NDH-1L and NDH-1M, represent distinct NDH-1 complexes in the thylakoid membrane of Synechocystis 6803 -cyanobacterium. NDH-1L was shown to be essential for photoheterotrophic cell growth, whereas expression of NDH-1M was a prerequisite for CO2 uptake and played an important role in growth of cells at low CO2. Here we report the subunit composition of these two complexes. Fifteen proteins were discovered in NDH-1L including NdhL, a new component of the membrane fragment, and Ssl1690 (designated as NdhO), a novel peripheral subunit. The cyanobacterial NDH-1 complex contains additional subunits, NdhM and NdhN, compared with the minimal set of the bacterial enzyme and these seem to be specific for thylakoid-located NDH-1 of photosynthetic organisms. The three subunits of NDH-1, NdhM, NdhN and NdhO are essential for effecting cyclic electron flow around photosystem I, by supplying extra-ATP for photosynthesis in both plastids and cyanobacteria. Length = 108

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	210
PF10664	108	NdhM: Cyanobacterial and plastid NDH-1 subunit M;	100.0
PF00316	324	FBPase: Fructose-1-6-bisphosphatase; InterPro: IPR	90.57
PLN02542	412	fructose-1,6-bisphosphatase	90.46
PRK09293	327	fructose-1,6-bisphosphatase; Provisional	81.84
cd00354	315	FBPase Fructose-1,6-bisphosphatase, an enzyme that	81.72

>PF10664 NdhM: Cyanobacterial and plastid NDH-1 subunit M; InterPro: IPR018922 The NADH dehydrogenase I complex shuttles electrons from an unknown electron donor, via FMN and iron-sulphur (Fe-S) centres, to quinones in the respiratory and/or the photosynthetic chain

Probab=100.00  E-value=7.6e-73  Score=442.44  Aligned_cols=107  Identities=55%  Similarity=0.912  Sum_probs=105.8

Q ss_pred             cccccceEEEEEEEecCCCcccCcccCceeEEecCCCCccccChHHHHHHHHHHHHHHhhccCCCCChhhhhhhccchHH
Q 028327           88 LSCATRHVRIYAAYIDPETWEFDQTQMDKLTLILDPTKEFVWTDESCNKVFAYFQELVDHYEGALLTEYTLRLIGSDLEH  167 (210)
Q Consensus        88 LksTTRHVRIytA~i~~~~lv~~~tq~~~LTLdlDPDNEF~W~d~~l~kVy~~F~ELVe~y~G~~LteYnLRrIGSDLEh  167 (210)
                      |||||||||||||+|++++++|++   ++|||||||||||+|+|++|+|||++|+||||+|+|++|||||||||||||||
T Consensus         1 LksTTRHvrIftA~v~~~~lv~~~---~~LTLdlDPdNEF~W~~~~l~kVy~~F~eLVe~~~G~~LtdYnLRrIGSdLE~   77 (108)
T PF10664_consen    1 LKSTTRHVRIFTAEVENNELVPSD---DKLTLDLDPDNEFNWNEEALQKVYRKFDELVESYAGEDLTDYNLRRIGSDLEH   77 (108)
T ss_pred             CCcceeeEEEEEEEEecCceecCC---CeeEEecCCCcccccCHHHHHHHHHHHHHHHHhhcCCCchhhhHHHhccHHHH
Confidence            799999999999999999999997   99999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCccccccCCccccccCCCcccc
Q 028327          168 YIRKLLYDGEIKYNMDARVLNFSMGKPRIM  197 (210)
Q Consensus       168 fIR~LLq~GeisYNl~~RVlNySMGlPrv~  197 (210)
                      |||+|||+|||||||+|||+|||||+|||+
T Consensus        78 ~iR~LLq~GeisYNl~~RVlNySMGlPr~~  107 (108)
T PF10664_consen   78 FIRSLLQAGEISYNLDSRVLNYSMGLPRVP  107 (108)
T ss_pred             HHHHHHHCCceeeCCCcceeccccCCCCCC
Confidence            999999999999999999999999999986

The immediate electron acceptor for the enzyme in plants is believed to be plastoquinone. The NADH dehydrogenase I complex couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. This entry represents subunit M of the NADH dehydrogenase I complex in cyanobacteria and plant chloroplasts []. ; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0055114 oxidation-reduction process

>PF00316 FBPase: Fructose-1-6-bisphosphatase; InterPro: IPR000146 This entry represents the fructose-1,6-bisphosphatase (FBPase) class 1 family

Probab=90.57  E-value=0.63  Score=42.48  Aligned_cols=102  Identities=23%  Similarity=0.358  Sum_probs=66.2

Q ss_pred             cccccccce-EEEEEEEecCCCcccCcccCceeEE-------ecCCCCccccChHHHHHHHHHHHHHHhhccCCCCChhh
Q 028327           86 QWLSCATRH-VRIYAAYIDPETWEFDQTQMDKLTL-------ILDPTKEFVWTDESCNKVFAYFQELVDHYEGALLTEYT  157 (210)
Q Consensus        86 ~lLksTTRH-VRIytA~i~~~~lv~~~tq~~~LTL-------dlDPDNEF~W~d~~l~kVy~~F~ELVe~y~G~~LteYn  157 (210)
                      +.|=-|+.+ |+.||-.-+.++++...   ..+++       -++--|.-.|++.    +.++.+++..-..|-. ..||
T Consensus       161 T~lV~t~g~gV~~FtLD~~~g~F~lt~---~~i~iP~~g~~ys~n~~n~~~w~~~----~~~yi~~~~~g~~~~~-~~y~  232 (324)
T PF00316_consen  161 TMLVLTTGSGVHGFTLDPSTGEFVLTH---PNIRIPEKGKIYSINESNARHWDPP----YRAYIDYCKAGKEGPR-KKYS  232 (324)
T ss_dssp             EEEEEECTTEEEEEEEETTTTEEEEEE---ESE---SSSSEEES-GGGGGGCTHH----HHHHHHHHHS-TTSST-CT-E
T ss_pred             eEEEEEECCcEeEEEEeCCCCEEEEec---CceeecCCCcEeccCccccccCChH----HHHHHHHHhcCCCCCC-cccc
Confidence            344444554 89998877777777654   34444       2333355667654    3344455554445544 8999


Q ss_pred             hhhhccchHHHHHHHHhcCccccccCCccccccCCCccccc
Q 028327          158 LRLIGSDLEHYIRKLLYDGEIKYNMDARVLNFSMGKPRIMF  198 (210)
Q Consensus       158 LRrIGSDLEhfIR~LLq~GeisYNl~~RVlNySMGlPrv~~  198 (210)
                      ||.|||=.-.|-|-|++-|--.|-.+.+   +.=|+=|.-+
T Consensus       233 ~RY~GsmVaD~HRiL~~GGif~YP~d~~---~~~GKLRlLY  270 (324)
T PF00316_consen  233 LRYIGSMVADVHRILLKGGIFLYPADKK---YPNGKLRLLY  270 (324)
T ss_dssp             EEB-SSHHHHHHHHHHHTCEEEE-SBSS---BTTCSSBTTT
T ss_pred             ceecCccchhHHHHHhhCcEEECCCCCC---CCCCceeEEE
Confidence            9999999999999999999999988888   7777777654

FBPase is a critical regulatory enzyme in gluconeogenesis that catalyses the removal of 1-phosphate from fructose 1,6-bis-phosphate to form fructose 6-phosphate [, ]. It is involved in many different metabolic pathways and found in most organisms. FBPase requires metal ions for catalysis (Mg2+ and Mn2+ being preferred) and the enzyme is potently inhibited by Li+. The fold of fructose-1,6-bisphosphatase was noted to be identical to that of inositol-1-phosphatase (IMPase) []. Inositol polyphosphate 1-phosphatase (IPPase), IMPase and FBPase share a sequence motif (Asp-Pro-Ile/Leu-Asp-Gly/Ser-Thr/Ser) which has been shown to bind metal ions and participate in catalysis. This motif is also found in the distantly-related fungal, bacterial and yeast IMPase homologues. It has been suggested that these proteins define an ancient structurally conserved family involved in diverse metabolic pathways, including inositol signalling, gluconeogenesis, sulphate assimilation and possibly quinone metabolism []. This entry also includes sedoheptulose-1,7-bisphosphatase, which is a member of the FBPase class 1 family.; GO: 0042578 phosphoric ester hydrolase activity, 0005975 carbohydrate metabolic process; PDB: 2GQ1_A 2QVR_A 2Q8M_B 2OX3_A 2OWZ_A 3KC0_C 2WBB_A 1FTA_C 2VT5_F 2Y5L_F ....

>PLN02542 fructose-1,6-bisphosphatase

Probab=90.46  E-value=0.54  Score=44.55  Aligned_cols=84  Identities=25%  Similarity=0.382  Sum_probs=57.1

Q ss_pred             cceEEEEEEEecCCCcccCcccCceeE-------EecCCCCccccChHHHHHHHHHHHHHHhhccCCCCChhhhhhhccc
Q 028327           92 TRHVRIYAAYIDPETWEFDQTQMDKLT-------LILDPTKEFVWTDESCNKVFAYFQELVDHYEGALLTEYTLRLIGSD  164 (210)
Q Consensus        92 TRHVRIytA~i~~~~lv~~~tq~~~LT-------LdlDPDNEF~W~d~~l~kVy~~F~ELVe~y~G~~LteYnLRrIGSD  164 (210)
                      -.=|++||-.-..++++...   ..++       .-+++-|.-.|++    .+-++.+++.+  .|..=.+|++|.|||=
T Consensus       258 G~GV~~FtLDp~~geFvLt~---~~i~IP~~g~iySiN~~N~~~W~~----~~~~yi~~~~~--~~~~gk~ys~RYiGSm  328 (412)
T PLN02542        258 GTGVFSFTLDPMYGEFVLTQ---ENIQIPKAGKIYSFNEGNYQLWDD----KLKKYIDDLKD--PGPSGKPYSARYIGSL  328 (412)
T ss_pred             CCCEEEEEEcCCCCeEEEeC---CCeeeCCCCcEeeeCcccccccCH----HHHHHHHHHhh--CCCCCCCCcceeeeec
Confidence            34678888554445666553   3333       3478899999985    44455555553  2222346999999999


Q ss_pred             hHHHHHHHHhcCccccccCC
Q 028327          165 LEHYIRKLLYDGEIKYNMDA  184 (210)
Q Consensus       165 LEhfIR~LLq~GeisYNl~~  184 (210)
                      .-.|-|-||+-|--.|--+.
T Consensus       329 VaDvHRiLl~GGIF~YP~d~  348 (412)
T PLN02542        329 VGDFHRTLLYGGIYGYPRDK  348 (412)
T ss_pred             hHHHHHHhhcCeEEecCCCC
Confidence            99999999997777775553

>PRK09293 fructose-1,6-bisphosphatase; Provisional

Probab=81.84  E-value=2.8  Score=38.04  Aligned_cols=53  Identities=32%  Similarity=0.486  Sum_probs=37.4

Q ss_pred             HHHhhccCCCCChhhhhhhccchHHHHHHHHhcCccccccCCccccccCCCccccc
Q 028327          143 ELVDHYEGALLTEYTLRLIGSDLEHYIRKLLYDGEIKYNMDARVLNFSMGKPRIMF  198 (210)
Q Consensus       143 ELVe~y~G~~LteYnLRrIGSDLEhfIR~LLq~GeisYNl~~RVlNySMGlPrv~~  198 (210)
                      ++...-.|.--.+||+|.|||=.-.+=|-|++-|--.|-.+   -.+.=|+=|..+
T Consensus       219 ~~~~~~~~~~~~~y~~Ry~gsmVaD~hr~L~~GGif~YP~~---~~~~~GkLRlly  271 (327)
T PRK09293        219 ELLAGKDGPRGRPYNMRYIGSMVADVHRILLKGGIFLYPAD---EPYPNGKLRLLY  271 (327)
T ss_pred             HHhccccccCCCCCCceeeeeehHHHhHHhhcCeEEEcCCC---CCCCCCcEEEEe
Confidence            33333334445789999999999999999999998888666   233345555543

>cd00354 FBPase Fructose-1,6-bisphosphatase, an enzyme that catalyzes the hydrolysis of fructose-1,6-biphosphate into fructose-6-phosphate and is critical in gluconeogenesis pathway

Probab=81.72  E-value=3.6  Score=37.20  Aligned_cols=94  Identities=21%  Similarity=0.352  Sum_probs=59.0

Q ss_pred             ceEEEEEEEecCCCcccCcccCceeEE-----e--cCCCCccccChHHHHHHHHHHHHHHhhccCCCCChhhhhhhccch
Q 028327           93 RHVRIYAAYIDPETWEFDQTQMDKLTL-----I--LDPTKEFVWTDESCNKVFAYFQELVDHYEGALLTEYTLRLIGSDL  165 (210)
Q Consensus        93 RHVRIytA~i~~~~lv~~~tq~~~LTL-----d--lDPDNEF~W~d~~l~kVy~~F~ELVe~y~G~~LteYnLRrIGSDL  165 (210)
                      .=|+.||-.-.-++++...   ..+++     .  ++.-|.-.|++.    +.++.+++...-+|  =.+|++|.|||=.
T Consensus       163 ~gv~~ftld~~~g~f~lt~---~~~~ip~~~~~ys~n~~n~~~w~~~----~~~yi~~~~~~~~~--~~~y~~Ry~gsmV  233 (315)
T cd00354         163 QGVHGFTLDPSLGEFILTH---PNVKIPKKGKIYSINEGNYRYWDEP----VKKYIDDCKAGEDG--GKPYNLRYIGSMV  233 (315)
T ss_pred             CceEEEEEcCCCCeEEEec---CCceeCCCCCEECCCCcchhcCCHH----HHHHHHHHhccccC--CCCccceeeeeee
Confidence            3466776543345666553   22333     2  233377778763    34444444443333  2469999999999


Q ss_pred             HHHHHHHHhcCccccccCCccccccCCCccccc
Q 028327          166 EHYIRKLLYDGEIKYNMDARVLNFSMGKPRIMF  198 (210)
Q Consensus       166 EhfIR~LLq~GeisYNl~~RVlNySMGlPrv~~  198 (210)
                      -.+-|-|++-|--.|-.+.+   +.=|+=|..+
T Consensus       234 aD~hr~L~~GGif~yP~~~~---~~~gkLRlly  263 (315)
T cd00354         234 ADVHRILVRGGIFLYPADKK---SPKGKLRLLY  263 (315)
T ss_pred             hHhHHhhhcCeEEEccCCCC---CCCCcEeeee
Confidence            99999999888888877766   5556666544

The alignment model also includes chloroplastic FBPases and sedoheptulose-1,7-biphosphatases that play a role in pentose phosphate pathway (Calvin cycle).

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	210
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-06

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.8 bits (105), Expect = 9e-06
 Identities = 26/177 (14%), Positives = 56/177 (31%), Gaps = 35/177 (19%)

Query: 15  MLGWIGGKRELKKKRVISISAQQQAEVEESRSKQV------KENENQAQVKQQQTPLRPV 68
           +LG  G       K  +++      +V+     ++        N  +  ++  Q  L  +
Sbjct: 158 VLG-SG-------KTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI 209

Query: 69  EPQTNVRSKNMSR-EYGGQWLSCATRHVRIYAAY-----I-----DPETWE-FD-QTQMD 115
           +P    RS + S  +     +    R +     Y     +     + + W  F+   +  
Sbjct: 210 DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCK-- 267

Query: 116 KLTLILDPTKEFVWTDESCNKVFAYFQELVDHYEGALLTEYTLRLIGSDLEHYIRKL 172
              L+   T+    TD             +DH+   L  +    L+   L+   + L
Sbjct: 268 --ILLT--TRFKQVTDFLSAAT--TTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL 318

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	210
1dcu_A	357	Fructose-1,6-bisphosphatase; chloroplast, photosyn	84.69

>1dcu_A Fructose-1,6-bisphosphatase; chloroplast, photosynthesis, redox regulation, thioredoxin, allostery, hydrolase; 2.20A {Pisum sativum} SCOP: e.7.1.1 PDB: 1d9q_A 1dbz_A 1spi_A

Probab=84.69  E-value=2.1  Score=38.19  Aligned_cols=99  Identities=22%  Similarity=0.356  Sum_probs=62.6

Q ss_pred             cccceEEEEEEEecCCCcccCccc----CceeEEecCCCCccccChHHHHHHHHHHHHHHhhccCCCCChhhhhhhccch
Q 028327           90 CATRHVRIYAAYIDPETWEFDQTQ----MDKLTLILDPTKEFVWTDESCNKVFAYFQELVDHYEGALLTEYTLRLIGSDL  165 (210)
Q Consensus        90 sTTRHVRIytA~i~~~~lv~~~tq----~~~LTLdlDPDNEF~W~d~~l~kVy~~F~ELVe~y~G~~LteYnLRrIGSDL  165 (210)
                      ++-.-|..|+-.-..++++.....    .+.=..-+++-|...|.+.    +.++++++.+  .|..=..|++|.|||=.
T Consensus       201 t~g~Gv~~Ftld~~~Gef~lt~~~i~ip~~~~iysin~~n~~~w~~~----~~~yi~~~~~--~~~~~~~y~~RyiGSmV  274 (357)
T 1dcu_A          201 TIGKGVFVFTLDPLYGEFVLTQENLQIPKSGKIYSFNEGNYKLWDEN----LKKYIDDLKE--PGPSGKPYSARYIGSLV  274 (357)
T ss_dssp             ESSSCEEEEEEETTTTEEEEEESSCCCCSCCSEEECCGGGGGGSCHH----HHHHHHHHHS--CCTTSCCCEECBCSCHH
T ss_pred             EeCCCEEEEEEcCCCCeEEEeCCceeECCCCcEEEECCcchhhcCHH----HHHHHHHHhh--cCCCCCCCcceEecccH
Confidence            344677888743223333322100    0222455677788889743    4455556643  34434679999999999


Q ss_pred             HHHHHHHHhcCccccccCCccccccCCCcccc
Q 028327          166 EHYIRKLLYDGEIKYNMDARVLNFSMGKPRIM  197 (210)
Q Consensus       166 EhfIR~LLq~GeisYNl~~RVlNySMGlPrv~  197 (210)
                      -.+-|-|++-|-..|--+.|-.|   |+=|..
T Consensus       275 ~DvhriL~~GGif~yP~d~~~p~---GKLRll  303 (357)
T 1dcu_A          275 GDFHRTLLYGGIYGYPRDKKSKN---GKLRLL  303 (357)
T ss_dssp             HHHHHHHHHCCEEEECCCSSSTT---CSSBTT
T ss_pred             HHHHHHHhcCeEEEccccccCCC---cchhhH
Confidence            99999999999888877776333   666643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	210
d1d9qa_	340	Fructose-1,6-bisphosphatase {Garden pea (Pisum sat	90.76

>d1d9qa_ e.7.1.1 (A:) Fructose-1,6-bisphosphatase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Multi-domain proteins (alpha and beta)
fold: Carbohydrate phosphatase
superfamily: Carbohydrate phosphatase
family: Inositol monophosphatase/fructose-1,6-bisphosphatase-like
domain: Fructose-1,6-bisphosphatase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=90.76  E-value=0.11  Score=43.59  Aligned_cols=99  Identities=22%  Similarity=0.375  Sum_probs=67.2

Q ss_pred             ccceEEEEEEEecCCCcccCcc--cC--ceeEEecCCCCccccChHHHHHHHHHHHHHHhhccCCCCChhhhhhhccchH
Q 028327           91 ATRHVRIYAAYIDPETWEFDQT--QM--DKLTLILDPTKEFVWTDESCNKVFAYFQELVDHYEGALLTEYTLRLIGSDLE  166 (210)
Q Consensus        91 TTRHVRIytA~i~~~~lv~~~t--q~--~~LTLdlDPDNEF~W~d~~l~kVy~~F~ELVe~y~G~~LteYnLRrIGSDLE  166 (210)
                      +-.-|+.||-.-+.++++....  +.  ..=+.-+++-|...|++.    +.++.+++.+  .|..-..|++|.+||=.-
T Consensus       185 ~g~gv~~FtlD~~~gef~lt~~~i~ip~~~~~ys~n~~n~~~w~~~----~~~yi~~~~~--~~~~~~~y~~Ry~GsmVa  258 (340)
T d1d9qa_         185 IGKGVFVFTLDPLYGEFVLTQENLQIPKSGKIYSFNEGNYKLWDEN----LKKYIDDLKE--PGPSGKPYSARYIGSLVG  258 (340)
T ss_dssp             SSSCCEEEEEETTTTEEEEEESSCCCCSCCSEEECCGGGGGGSCHH----HHHHHHHHTS--CCSSSCCCEECBCSCHHH
T ss_pred             ECCCEEEEEEcCCCCeEEEeccccccCCCcccccCCccchhhhhHH----HHHHHHHHhc--cCCcCcceeeeeecccch
Confidence            3345888887655556554320  00  123455788888999975    2333344432  465666899999999999


Q ss_pred             HHHHHHHhcCccccccCCccccccCCCccccc
Q 028327          167 HYIRKLLYDGEIKYNMDARVLNFSMGKPRIMF  198 (210)
Q Consensus       167 hfIR~LLq~GeisYNl~~RVlNySMGlPrv~~  198 (210)
                      .+=|-|++-|-..|..+.+   +..|+=|.-+
T Consensus       259 D~hr~L~~GGif~yP~~~~---~~~gkLRlly  287 (340)
T d1d9qa_         259 DFHRTLLYGGIYGYPRDKK---SKNGKLRLLY  287 (340)
T ss_dssp             HHHHHHHHCCEEEECCBTT---BTTCSSBTTT
T ss_pred             hHHHHHHhCCeEEecCCCC---CCCccEeeec
Confidence            9999999999999988876   4557766544