Citrus Sinensis ID: 028400

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------21
Protein Sequence
MVSESDNPEQNSSGLIISNNDSIRSFLLSASEDVQLPRELRETALNLSSLNKAPYKSIRQIWVGSLPSIRPDLFRLFSGSEFVFTSPKPREKSEELKARLRQLAERAERDEYRELVKDILPKSSATEPFSSYKDQLGFGLHVVLIMFTGYLVGYLAFRALFSHSTAMSAAGGILGLVCGMLVETLLFIIRSSNHDNKSSATASKQKKNQ
Secondary Structure (PSIPRED)
cccccccccccccccEEcccHHHHHHHHHHHccccccHHHHHHHHHHHccccccHHHHHHHHHHccccccccHHHHHcccEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHccc
Secondary Structure Prediction (SSPRO)
cccccccccccccEEEEEccHHHHHHHHHHHccccccHHHHHHHHHHHccccccHHHHHHHHHcccccccccHHHHHccccEEccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccc
Coil and Loop (DISEMBL)
mvsesdnpeqnssgliisnNDSIRSFLLSasedvqlpRELRETALNLSslnkapyksIRQIWvgslpsirpdlfrlfsgsefvftspkprekSEELKARLRQLAERAERDEYRELVKDilpkssatepfssykdqlgfGLHVVLIMFTGYLVGYLAFRALFSHSTAMSAAGGILGLVCGMLVETLLFIIRssnhdnkssaTASKQKKNQ
Flexible Loop (DISEMBL)
mvsesdnpeqnssgliisnNDSIRSFLLSASEDVQLPRELRETALnlsslnkapyksIRQIWVGSLPSIRPDLFRLFSGSefvftspkprekseelKARLRQLAERAERDEYRELVKDilpkssatepfssYKDQLGFGLHVVLIMFTGYLVGYLAFRALFSHSTAMSAAGGILGLVCGMLVETLLFIIRssnhdnkssataskqkknq
Low Complexity Region (SEG)
MVSESDNPEQNSSGLIISNNDSIRSFLLSASEDVQLPRELRETALNLSSLNKAPYKSIRQIWVGSLPSIRPDLFRLFSGSEFVFTSPKPREKSeelkarlrqlaeraerDEYRELVKDILPKSSATEPFSSYKDQLGFGLHVVLIMFTGYLVGYLAFRALFSHSTAMSAAGGILGLVCGMLVETLLFIIRSSNHDNKSSATASKQKKNQ
Disordered region (IsUnstruct)
********************************************LNLSSLNKAPYKSIRQIWVGSLPSIRPDLFRLFSGSEFVF**********************************************SYKDQLGFGLHVVLIMFTGYLVGYLAFRALFSHSTAMSAAGGILGLVCGMLVETLLFIIR*******************
Disordered Region (DISOPRED)
*****************SNNDSIRSFLL******************LSSLNKAPYKSIRQIWVGSLPSIRPDLFRLFSGSEFVF****************R*LA******************************QLGFGLHVVLIMFTGYLVGYLAFRALFSHSTAMSAAGGILGLVCGMLVETLLFII********************
Disordered Region (DISEMBL)
************SGLIISNNDSIRSFLLSASEDVQLPRELRETALNLSSLNKAPYKSIRQIWVGSLPSIRPDLFRLFSGSEFVFT***********KARLRQLAERAERDEYRELVKDILPKSSATEPFSSYKDQLGFGLHVVLIMFTGYLVGYLAFRALFSHSTAMSAAGGILGLVCGMLVETLLFIIRSSN****************
Disordered Region (DISPRO)
*********QNSSGLIISNNDSIRSFLLSASEDVQLPRELRETALNLSSLNKAPYKSIRQIWVGSLPSIRPDLFRLFSGSEFVFTSPKPREKSEELKARLRQLAERAERDEYRELVKDILPKSSATEPFSSYKDQLGFGLHVVLIMFTGYLVGYLAFRALFSHSTAMSAAGGILGLVCGMLVETLLFIIRSS*****************
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVSESDNPEQNSSGLIISNNDSIRSFLLSASEDVQLPRELRETALNLSSLNKAPYKSIRQIWVGSLPSIRPDLFRLFSGSEFVFTSPKPxxxxxxxxxxxxxxxxxxxxxxxxELVKDILPKSSATEPFSSYKDQLGFGLHVVLIMFTGYLVGYLAFRALFSHSTAMSAAGGILGLVCGMLVETLLFIIRSSNHDNKSSATASKQKKNQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	209
224071369	207	predicted protein [Populus trichocarpa]	0.980	0.990	0.704	1e-72
255573453	213	conserved hypothetical protein [Ricinus	0.933	0.915	0.680	1e-67
225427171	206	PREDICTED: uncharacterized protein LOC10	0.942	0.956	0.659	3e-65
449441468	206	PREDICTED: uncharacterized protein LOC10	0.880	0.893	0.695	9e-65
388492418	227	unknown [Lotus japonicus]	0.933	0.859	0.625	4e-64
15237323	222	uncharacterized protein [Arabidopsis tha	0.956	0.900	0.651	5e-64
351721100	215	uncharacterized protein LOC100499678 [Gl	0.961	0.934	0.601	7e-64
297796123	212	hypothetical protein ARALYDRAFT_918360 [	0.976	0.962	0.620	9e-63
297826025	212	hypothetical protein ARALYDRAFT_481612 [	0.976	0.962	0.620	1e-62
356576193	215	PREDICTED: uncharacterized protein LOC10	0.971	0.944	0.595	3e-62

>gi|224071369|ref|XP_002303426.1| predicted protein [Populus trichocarpa] gi|222840858|gb|EEE78405.1| predicted protein [Populus trichocarpa]

 Score =  278 bits (710), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 148/210 (70%), Positives = 163/210 (77%), Gaps = 5/210 (2%)

Query: 2   VSESDNPEQNSSGLIISNNDSIRSFLLSASEDVQLPRELRETALNLSSLNKAPYKSIRQI 61
           +SE  NP    SGL IS  + IRSFLLSAS+D  +PREL++ ALNLSS N   YKS R I
Sbjct: 1   MSEPRNPP---SGLRISMTEPIRSFLLSASKDGDVPRELQDLALNLSSQNNLHYKSFRSI 57

Query: 62  WVGSLPSIRP-DLFRLFSGSEFVFTSPKPREKSEELKARLRQLAERAERDEYRELVKDIL 120
           W+ S PS RP DL RLFSGS F+ +SPKPREKSEELKARLR+L E AER  Y ELVKDI 
Sbjct: 58  WIRSPPSTRPPDLIRLFSGSNFILSSPKPREKSEELKARLRKLEEMAERKAYAELVKDIT 117

Query: 121 PKSSATEPFSSYKDQLGFGLHVVLIMFTGYLVGYLAFRALFSHSTAMSAAGGILGLVCGM 180
           P+ +  EPFSSYKDQ+GFGLHVVLIMFTGYLVGY AFRALF HS AMSAAGGILGLV GM
Sbjct: 118 PRKNTDEPFSSYKDQMGFGLHVVLIMFTGYLVGYAAFRALFGHSPAMSAAGGILGLVFGM 177

Query: 181 LVETLLFIIRSSNHDNKSSA-TASKQKKNQ 209
           LVET LFIIR+SN D +SS    SK KKNQ
Sbjct: 178 LVETFLFIIRTSNPDPRSSTPNTSKLKKNQ 207

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255573453|ref|XP_002527652.1| conserved hypothetical protein [Ricinus communis] gi|223532957|gb|EEF34723.1| conserved hypothetical protein [Ricinus communis]

 Score =  261 bits (668), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 134/197 (68%), Positives = 151/197 (76%), Gaps = 2/197 (1%)

Query: 1   MVSESDNPEQNSSGLIISNNDSIRSFLLSASEDVQLPRELRETALNLSSLNKAPYKSIRQ 60
           M S +D P  N  GL I   + IRSFLLSAS++  L ++LR+ A  L S +   YKS+R 
Sbjct: 1   MSSATDPP--NPPGLTILLTEPIRSFLLSASKEPHLSQQLRDLASFLVSQHNVQYKSLRS 58

Query: 61  IWVGSLPSIRPDLFRLFSGSEFVFTSPKPREKSEELKARLRQLAERAERDEYRELVKDIL 120
           IW+ S  S RPDL RLFSGSE V TSPKPREKSEELKARLR+L E AER+ Y+ELVKDI 
Sbjct: 59  IWIASPHSTRPDLIRLFSGSELVLTSPKPREKSEELKARLRKLEELAERNAYQELVKDIT 118

Query: 121 PKSSATEPFSSYKDQLGFGLHVVLIMFTGYLVGYLAFRALFSHSTAMSAAGGILGLVCGM 180
           P+    EPFSSYKDQLGFGLHV L MFTGYLVGY AFRALF HS AMSAAGGILGLVCGM
Sbjct: 119 PRKDEIEPFSSYKDQLGFGLHVALTMFTGYLVGYAAFRALFGHSPAMSAAGGILGLVCGM 178

Query: 181 LVETLLFIIRSSNHDNK 197
           LVETLLFIIR+S+ D +
Sbjct: 179 LVETLLFIIRTSSQDPR 195

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225427171|ref|XP_002279767.1| PREDICTED: uncharacterized protein LOC100259119 [Vitis vinifera] gi|297742081|emb|CBI33868.3| unnamed protein product [Vitis vinifera]

 Score =  253 bits (646), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 130/197 (65%), Positives = 154/197 (78%)

Query: 13  SGLIISNNDSIRSFLLSASEDVQLPRELRETALNLSSLNKAPYKSIRQIWVGSLPSIRPD 72
           +GLII N D+IRSFL SAS D  L  +L+ TA  L+S    PYK +R +WV S    RP 
Sbjct: 10  NGLIIGNTDTIRSFLRSASTDPHLSADLQLTASTLASQTTLPYKPLRALWVASPSQTRPK 69

Query: 73  LFRLFSGSEFVFTSPKPREKSEELKARLRQLAERAERDEYRELVKDILPKSSATEPFSSY 132
           L  L  GS+F+FTSPKPREKSEELK RLR+LA+ AER+ Y ELVKDI PK +  EPF+SY
Sbjct: 70  LSGLLYGSQFIFTSPKPREKSEELKLRLRKLADMAERNAYEELVKDITPKKTTDEPFASY 129

Query: 133 KDQLGFGLHVVLIMFTGYLVGYLAFRALFSHSTAMSAAGGILGLVCGMLVETLLFIIRSS 192
           KDQLGFGLHVV+ MF+GYLVGY AFRALFSH+  M+AAGGILGLVC MLVETLLFIIR+S
Sbjct: 130 KDQLGFGLHVVVTMFSGYLVGYAAFRALFSHNPVMNAAGGILGLVCAMLVETLLFIIRTS 189

Query: 193 NHDNKSSATASKQKKNQ 209
           +HD +SS++ S+ KKNQ
Sbjct: 190 SHDLRSSSSTSRMKKNQ 206

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449441468|ref|XP_004138504.1| PREDICTED: uncharacterized protein LOC101222938 [Cucumis sativus] gi|449522720|ref|XP_004168374.1| PREDICTED: uncharacterized protein LOC101228437 [Cucumis sativus]

 Score =  251 bits (642), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 128/184 (69%), Positives = 142/184 (77%)

Query: 7   NPEQNSSGLIISNNDSIRSFLLSASEDVQLPRELRETALNLSSLNKAPYKSIRQIWVGSL 66
           N     SGL++S+ ++IRSFL SAS D QL  ELR+ A +L S    PYK +R IW  + 
Sbjct: 3   NDHALPSGLVLSHTEAIRSFLTSASIDSQLSDELRQIASDLVSQRNIPYKLLRAIWFATE 62

Query: 67  PSIRPDLFRLFSGSEFVFTSPKPREKSEELKARLRQLAERAERDEYRELVKDILPKSSAT 126
            S RPDL RL +GSEFVFTSPKPREKSEELKARL++LA+ AER  Y+ELVKDI PK    
Sbjct: 63  SSTRPDLLRLLAGSEFVFTSPKPREKSEELKARLKKLADVAERKAYQELVKDIAPKKPID 122

Query: 127 EPFSSYKDQLGFGLHVVLIMFTGYLVGYLAFRALFSHSTAMSAAGGILGLVCGMLVETLL 186
           EPFSSYKDQLGFGLHVVLIMFTGYLVGY  FRALF H   MSAAGGILGLV GMLVETLL
Sbjct: 123 EPFSSYKDQLGFGLHVVLIMFTGYLVGYALFRALFRHDPIMSAAGGILGLVFGMLVETLL 182

Query: 187 FIIR 190
           FIIR
Sbjct: 183 FIIR 186

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388492418|gb|AFK34275.1| unknown [Lotus japonicus]

 Score =  249 bits (637), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 122/195 (62%), Positives = 149/195 (76%)

Query: 14  GLIISNNDSIRSFLLSASEDVQLPRELRETALNLSSLNKAPYKSIRQIWVGSLPSIRPDL 73
           GLIIS  DSIR+FL  AS +  L  ELR+++ +L   +  PY  +R +W+ S PS RP+L
Sbjct: 22  GLIISITDSIRTFLTGASNNPTLSLELRQSSSDLLRQSDVPYAPLRAVWIASDPSTRPEL 81

Query: 74  FRLFSGSEFVFTSPKPREKSEELKARLRQLAERAERDEYRELVKDILPKSSATEPFSSYK 133
            RLFSG+ FVF+SPKPREKSEELK RLR+L + AER  Y+ELVKDI PK    EPFSSYK
Sbjct: 82  TRLFSGTRFVFSSPKPREKSEELKERLRKLEDLAERKAYQELVKDIAPKQDVVEPFSSYK 141

Query: 134 DQLGFGLHVVLIMFTGYLVGYLAFRALFSHSTAMSAAGGILGLVCGMLVETLLFIIRSSN 193
           DQLGFGLHV++ MFTGYLVGY AFRALF+H  AM+AAGGILGLV  MLVET LFIIRSSN
Sbjct: 142 DQLGFGLHVLVTMFTGYLVGYAAFRALFNHGPAMNAAGGILGLVGAMLVETFLFIIRSSN 201

Query: 194 HDNKSSATASKQKKN 208
            D+  +  ++K+ ++
Sbjct: 202 LDDSKTRKSNKKPRS 216

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15237323|ref|NP_200110.1| uncharacterized protein [Arabidopsis thaliana] gi|8809587|dbj|BAA97138.1| unnamed protein product [Arabidopsis thaliana] gi|46518365|gb|AAS99664.1| At5g52980 [Arabidopsis thaliana] gi|48310362|gb|AAT41806.1| At5g52980 [Arabidopsis thaliana] gi|110743071|dbj|BAE99428.1| hypothetical protein [Arabidopsis thaliana] gi|332008903|gb|AED96286.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  249 bits (636), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 131/201 (65%), Positives = 148/201 (73%), Gaps = 1/201 (0%)

Query: 6   DNPE-QNSSGLIISNNDSIRSFLLSASEDVQLPRELRETALNLSSLNKAPYKSIRQIWVG 64
           D P+ +N SGLI+S  + +RSFL  AS D +L  ELR  A +L S N  PYK +R IW G
Sbjct: 2   DQPDPKNGSGLILSATEPLRSFLALASGDRRLSDELRGIASDLRSKNTIPYKLLRAIWTG 61

Query: 65  SLPSIRPDLFRLFSGSEFVFTSPKPREKSEELKARLRQLAERAERDEYRELVKDILPKSS 124
           S PS RPDL  LFSGS FVFTSPKPREKSEELK RL +L E AER EY ELVKDI PK  
Sbjct: 62  SDPSTRPDLLGLFSGSNFVFTSPKPREKSEELKLRLVKLREIAERKEYAELVKDITPKKQ 121

Query: 125 ATEPFSSYKDQLGFGLHVVLIMFTGYLVGYLAFRALFSHSTAMSAAGGILGLVCGMLVET 184
             EPFSSYKDQLGFGLHV L MFTGYLVGY +FRALF+ + A+SAAGGILGLV  MLVET
Sbjct: 122 VEEPFSSYKDQLGFGLHVGLTMFTGYLVGYASFRALFNRNPALSAAGGILGLVLAMLVET 181

Query: 185 LLFIIRSSNHDNKSSATASKQ 205
           LLFII++S  D   S+ +  Q
Sbjct: 182 LLFIIKTSKDDQIQSSKSFTQ 202

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351721100|ref|NP_001238222.1| uncharacterized protein LOC100499678 [Glycine max] gi|255625721|gb|ACU13205.1| unknown [Glycine max]

 Score =  249 bits (635), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 127/211 (60%), Positives = 151/211 (71%), Gaps = 10/211 (4%)

Query: 9   EQNSSGLIISNNDSIRSFLLSASEDVQLPRELRETALNLSSLNKAPYKSIRQIWVGSLPS 68
           + N  GL+IS  D IR FL  AS+D  L  EL+ T+ +L   ++ PY   R +W+ S PS
Sbjct: 5   KSNRVGLVISRTDPIRDFLSDASKDATLSDELQRTSSDLLLQSEIPYVPFRTVWMASDPS 64

Query: 69  IRPDLFRLFSGSEFVFTSPKPREKSEELKARLRQLAERAERDEYRELVKDILPKSSATEP 128
            RPDL RLFSG+ F+F+SPKPREKSEELKARL++L + AER  Y+ELVKDI P     EP
Sbjct: 65  TRPDLTRLFSGTRFIFSSPKPREKSEELKARLKKLEDIAERKAYQELVKDITPPKDVQEP 124

Query: 129 FSSYKDQLGFGLHVVLIMFTGYLVGYLAFRALFSHSTAMSAAGGILGLVCGMLVETLLFI 188
           FSSYKDQLGFGLHVV+ MFTGYL+GY AFRALF+HS AM+AAGGILGLV  M VET LFI
Sbjct: 125 FSSYKDQLGFGLHVVVTMFTGYLLGYAAFRALFNHSPAMNAAGGILGLVGAMFVETFLFI 184

Query: 189 IRSSNHDN----------KSSATASKQKKNQ 209
           IRSSN D           +SS + S+ KKNQ
Sbjct: 185 IRSSNADADKTRESSQKPRSSFSTSRIKKNQ 215

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297796123|ref|XP_002865946.1| hypothetical protein ARALYDRAFT_918360 [Arabidopsis lyrata subsp. lyrata] gi|297311781|gb|EFH42205.1| hypothetical protein ARALYDRAFT_918360 [Arabidopsis lyrata subsp. lyrata]

 Score =  245 bits (625), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 131/211 (62%), Positives = 151/211 (71%), Gaps = 7/211 (3%)

Query: 6   DNPE-QNSSGLIISNNDSIRSFLLSASEDVQLPRELRETALNLSSLNKAPYKSIRQIWVG 64
           D P+ +N +GLI+S  + +RSFL  AS D++L  ELR  A +LSS N   YK +R IW G
Sbjct: 2   DQPDPKNGAGLILSVTEPMRSFLAIASGDLRLSEELRGIASDLSSKNTVSYKLLRAIWTG 61

Query: 65  SLPSIRPDLFRLFSGSEFVFTSPKPREKSEELKARLRQLAERAERDEYRELVKDILPKSS 124
           S P  RP L  LFSGS+FVFTSPKPREKSEELK RL +L E AER EY ELVKDI PK  
Sbjct: 62  SDPLTRPGLLGLFSGSDFVFTSPKPREKSEELKMRLLKLKEIAERKEYAELVKDITPKKQ 121

Query: 125 ATEPFSSYKDQLGFGLHVVLIMFTGYLVGYLAFRALFSHSTAMSAAGGILGLVCGMLVET 184
             EPFSSYKDQLGFGLHV L MFTGYLVGY +FRALF+ + A+SAAGGILGLV  MLVET
Sbjct: 122 VEEPFSSYKDQLGFGLHVGLTMFTGYLVGYASFRALFNRNPALSAAGGILGLVLAMLVET 181

Query: 185 LLFIIRSSNHDNKSSATA------SKQKKNQ 209
           LLFII++S  D   S+ +         KKNQ
Sbjct: 182 LLFIIKTSKDDQIQSSKSFTPSFTPTTKKNQ 212

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297826025|ref|XP_002880895.1| hypothetical protein ARALYDRAFT_481612 [Arabidopsis lyrata subsp. lyrata] gi|297326734|gb|EFH57154.1| hypothetical protein ARALYDRAFT_481612 [Arabidopsis lyrata subsp. lyrata]

 Score =  244 bits (623), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 131/211 (62%), Positives = 150/211 (71%), Gaps = 7/211 (3%)

Query: 6   DNPE-QNSSGLIISNNDSIRSFLLSASEDVQLPRELRETALNLSSLNKAPYKSIRQIWVG 64
           D P+ +N SGLI+S  + +RSFL  AS D++L  ELR  A +LSS N   YK +R IW G
Sbjct: 2   DQPDPKNGSGLILSVTEPMRSFLAIASGDLRLSEELRGIASDLSSKNSVSYKLLRAIWTG 61

Query: 65  SLPSIRPDLFRLFSGSEFVFTSPKPREKSEELKARLRQLAERAERDEYRELVKDILPKSS 124
           S P  RP L  LFSG +FVFTSPKPREKSEELK RL +L E AER EY ELVKDI PK  
Sbjct: 62  SDPLTRPGLLGLFSGCDFVFTSPKPREKSEELKMRLLKLKEIAERKEYAELVKDITPKKQ 121

Query: 125 ATEPFSSYKDQLGFGLHVVLIMFTGYLVGYLAFRALFSHSTAMSAAGGILGLVCGMLVET 184
             EPFSSYKDQLGFGLHV L MFTGYLVGY +FRALF+ + A+SAAGGILGLV  MLVET
Sbjct: 122 VEEPFSSYKDQLGFGLHVGLTMFTGYLVGYASFRALFNRNPALSAAGGILGLVLAMLVET 181

Query: 185 LLFIIRSSNHDNKSSATA------SKQKKNQ 209
           LLFII++S  D   S+ +         KKNQ
Sbjct: 182 LLFIIKTSKDDQIQSSKSFTPSFTPTTKKNQ 212

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356576193|ref|XP_003556218.1| PREDICTED: uncharacterized protein LOC100808257 [Glycine max]

 Score =  243 bits (620), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 128/215 (59%), Positives = 149/215 (69%), Gaps = 12/215 (5%)

Query: 5   SDNPEQNSSGLIISNNDSIRSFLLSASEDVQLPRELRETALNLSSLNKAPYKSIRQIWVG 64
           +D P  N  G  I   D IR FL  AS+D  L  ELR T+ +L   +  PY  +R +W+ 
Sbjct: 3   TDKP--NRVGSFIYITDPIRVFLSGASKDATLSDELRRTSSDLLLQSDVPYAQLRAVWMA 60

Query: 65  SLPSIRPDLFRLFSGSEFVFTSPKPREKSEELKARLRQLAERAERDEYRELVKDILPKSS 124
           S PS RPDL RLFSG+ F+F+SPKPREKSEELKARL++L + AER  Y+ELVKDI P   
Sbjct: 61  SDPSTRPDLTRLFSGTRFIFSSPKPREKSEELKARLKKLEDIAERKAYQELVKDITPPKD 120

Query: 125 ATEPFSSYKDQLGFGLHVVLIMFTGYLVGYLAFRALFSHSTAMSAAGGILGLVCGMLVET 184
             EPFSSYKDQLGFGLHVV+ MFTGYL+GY AFRALF+HS AM+AAGGILGLV  M VET
Sbjct: 121 VPEPFSSYKDQLGFGLHVVVTMFTGYLLGYAAFRALFNHSPAMNAAGGILGLVGAMFVET 180

Query: 185 LLFIIRSSNHD----------NKSSATASKQKKNQ 209
            LFIIRSSN D           +SS + S  KKNQ
Sbjct: 181 FLFIIRSSNTDANKTRKSSQKARSSFSTSGIKKNQ 215

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	209
TAIR|locus:2168372	222	AT5G52980 "AT5G52980" [Arabido	0.956	0.900	0.597	7e-54
DICTYBASE|DDB_G0290801	251	DDB_G0290801 "Transmembrane pr	0.444	0.370	0.323	5.1e-05

TAIR|locus:2168372 AT5G52980 "AT5G52980" [Arabidopsis thaliana (taxid:3702)]

 Score = 557 (201.1 bits), Expect = 7.0e-54, P = 7.0e-54
 Identities = 120/201 (59%), Positives = 136/201 (67%)

Query:     6 DNPE-QNSSGLIISNNDSIRSFLLSASEDVQLPRELRETALNLSSLNKAPYKSIRQIWVG 64
             D P+ +N SGLI+S  + +RSFL  AS D +L  ELR  A +L S N  PYK +R IW G
Sbjct:     2 DQPDPKNGSGLILSATEPLRSFLALASGDRRLSDELRGIASDLRSKNTIPYKLLRAIWTG 61

Query:    65 SLPSIRPDLFRLFSGSEFVFTSPKPREKSXXXXXXXXXXXXXXXXDEYRELVKDILPKSS 124
             S PS RPDL  LFSGS FVFTSPKPREKS                 EY ELVKDI PK  
Sbjct:    62 SDPSTRPDLLGLFSGSNFVFTSPKPREKSEELKLRLVKLREIAERKEYAELVKDITPKKQ 121

Query:   125 ATEPFSSYKDQLGFGLHVVLIMFTGYLVGYLAFRALFSHSTAMSAAGGILGLVCGMLVET 184
               EPFSSYKDQLGFGLHV L MFTGYLVGY +FRALF+ + A+SAAGGILGLV  MLVET
Sbjct:   122 VEEPFSSYKDQLGFGLHVGLTMFTGYLVGYASFRALFNRNPALSAAGGILGLVLAMLVET 181

Query:   185 LLFIIRSSNHDNKSSATASKQ 205
             LLFII++S  D   S+ +  Q
Sbjct:   182 LLFIIKTSKDDQIQSSKSFTQ 202

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

DICTYBASE|DDB_G0290801 DDB_G0290801 "Transmembrane protein 199" [Dictyostelium discoideum (taxid:44689)]

 Score = 115 (45.5 bits), Expect = 5.1e-05, P = 5.1e-05
 Identities = 32/99 (32%), Positives = 55/99 (55%)

Query:   111 EYRELVKDILPKSSATEPFSSYKDQLGFGLHVVLIMFTGYLVG--YLAFRALFSHSTAMS 168
             +Y +LVK++  K +     SS++ QL   +++++  FT  LVG  ++    L S    + 
Sbjct:   120 QYSKLVKNVAKKETDLNELSSFRSQLSIAVNILVTFFT-LLVGGIFVGHNWLNSQLYGL- 177

Query:   169 AAGGILGLVCGMLVETLLFIIRSS-NHDNKSSATASKQK 206
               G +LG++ G+ VE  LF+IRSS N   K  A  +++K
Sbjct:   178 VCGLVLGII-GVAVEIWLFVIRSSQNQMEKDKAEKTEEK 215


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.316   0.132   0.365    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      209       193   0.00098  110 3  11 22  0.48    32
                                                     31  0.43    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  575 (61 KB)
  Total size of DFA:  137 KB (2085 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  16.66u 0.12s 16.78t   Elapsed:  00:00:01
  Total cpu time:  16.66u 0.12s 16.78t   Elapsed:  00:00:01
  Start:  Mon May 20 16:57:31 2013   End:  Mon May 20 16:57:32 2013

GO:0044351 "macropinocytosis" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_Genewise1_v1.C_LG_III2472 hypothetical protein (207 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	209
pfam11712	137	pfam11712, Vma12, Endoplasmic reticulum-based fact	4e-17

>gnl|CDD|221180 pfam11712, Vma12, Endoplasmic reticulum-based factor for assembly of V-ATPase

 Score = 73.9 bits (182), Expect = 4e-17
 Identities = 33/133 (24%), Positives = 59/133 (44%), Gaps = 18/133 (13%)

Query: 75  RLFSGSEFVFTSPKPR-EKSEELKARLRQLAERAERDEYRELVKDILPKSSATEP----- 128
            L  GS+     P P+ E S E  ARL +L    E  EY+ + +++ P++++  P     
Sbjct: 2   ELLKGSKIYLPPPPPKPEPSPEFLARLERLRAAQEEREYQRMTRNVDPQTNSKGPSEDDE 61

Query: 129 ------FSSYKDQLGFGLHVVLIMFTGYLVGYLAFRALFSHSTAMSAAGGILGLVCGMLV 182
                 +   K QL    ++++ +   +  G+      F  S     A  +LGL  G+LV
Sbjct: 62  DTFGQEYKEVKRQLSTVFNILVSVVGTFFAGWYWALYSFGLSI---PARVLLGLFFGLLV 118

Query: 183 ---ETLLFIIRSS 192
              E ++++I  S
Sbjct: 119 LVAEVVVYVIYLS 131

The yeast vacuolar proton-translocating ATPase (V-ATPase) is the best characterized member of the V-ATPase family. A total of thirteen genes are required for encoding the subunits of the enzyme complex itself and an additional three for providing factors necessary for the assembly of the whole. Vma12 is one of these latter, all three of which are localised to the endoplasmic reticulum. Length = 137

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	209
PF11712	142	Vma12: Endoplasmic reticulum-based factor for asse	100.0
TIGR02230	100	ATPase_gene1 F0F1-ATPase subunit, putative. This m	95.9
COG5336	116	Uncharacterized protein conserved in bacteria [Fun	95.24
PF09527	55	ATPase_gene1: Putative F0F1-ATPase subunit (ATPase	94.94
PF11712	142	Vma12: Endoplasmic reticulum-based factor for asse	89.97
PF11241	170	DUF3043: Protein of unknown function (DUF3043); In	87.85
PF11286	165	DUF3087: Protein of unknown function (DUF3087); In	84.86
PF06645	76	SPC12: Microsomal signal peptidase 12 kDa subunit	83.84
PF14362	301	DUF4407: Domain of unknown function (DUF4407)	82.65

>PF11712 Vma12: Endoplasmic reticulum-based factor for assembly of V-ATPase; InterPro: IPR021013 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=100.00  E-value=1.3e-33  Score=226.99  Aligned_cols=125  Identities=26%  Similarity=0.460  Sum_probs=107.2

Q ss_pred             hhhcCCCeEEecCCCCCCC-CHHHHHHHHHHHHHHHHHHHHHhhccCCCCCC----------C-----CCcccchhhhHH
Q 028400           74 FRLFSGSEFVFTSPKPREK-SEELKARLRQLAERAERDEYRELVKDILPKSS----------A-----TEPFSSYKDQLG  137 (209)
Q Consensus        74 ~~LL~gs~i~~p~p~~~~~-spEl~ArlekLr~~~eereY~~Mtk~v~~~~~----------~-----~~~~~~~k~ql~  137 (209)
                      |+||+||+||+|+|+++|+ ||||+|||||||+++||++|++||+|+++...          .     ...++++++|++
T Consensus         1 ~~Ll~gs~v~~p~~~~~~~~s~E~~a~le~Lr~~~ee~eY~~mv~~~~~~~~~~~~~~~~~~~~~~t~~~~~k~~~~qls   80 (142)
T PF11712_consen    1 HELLRGSKVYFPPPPPKPRPSPELKARLERLRAEQEEREYQRMVRNVDPSQSFSQTPAFGSDEPEDTPAQELKSVKRQLS   80 (142)
T ss_pred             CccccCCeEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccccCCcCcHHHHHHHHHHHHH
Confidence            7999999999999988887 99999999999999999999999999965221          1     244789999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhc-ccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccc
Q 028400          138 FGLHVVLIMFTGYLVGYLAFRALF-SHSTAMSAAGGILGLVCGMLVETLLFIIRSSNHDNKS  198 (209)
Q Consensus       138 ~v~n~lvtvfa~F~~gy~~~~~~~-~~~~~~~~~~~i~glv~~l~~E~~lfiiR~~~~~~~~  198 (209)
                      +|+||++||+++|++||++++++| +.+...|++.+++|+++.+++|+++|+++.++.|..+
T Consensus        81 ~v~Nilvsv~~~~~~~~~~~~~~~~~~~~~~Rvllgl~~al~vlvAEv~l~~~y~~k~e~ak  142 (142)
T PF11712_consen   81 TVFNILVSVFAVFFAGWYWAGYSFGGWSFPYRVLLGLFGALLVLVAEVVLYIRYLRKVEEAK  142 (142)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcC
Confidence            999999999999999999999999 7788888665555555555689999999999887643

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. The yeast vacuolar proton-translocating ATPase (V-ATPase) is the best characterised member of the V-ATPase family. A total of thirteen genes are required for encoding the subunits of the enzyme complex itself and an additional three for providing factors necessary for the assembly of the whole. Vma12 is one of these latter, all three of which are localised to the endoplasmic reticulum [].

>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative

Probab=95.90  E-value=0.21  Score=38.27  Aligned_cols=53  Identities=23%  Similarity=0.308  Sum_probs=40.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 028400          137 GFGLHVVLIMFTGYLVGYLAFRALFSHSTAMSAAGGILGLVCGMLVETLLFIIRS  191 (209)
Q Consensus       137 ~~v~n~lvtvfa~F~~gy~~~~~~~~~~~~~~~~~~i~glv~~l~~E~~lfiiR~  191 (209)
                      .++..|++.++.|.+.|+|+=+. |+..+.+-++++++|+++|+. -+|++|-|.
T Consensus        47 ~IG~~~v~pil~G~~lG~WLD~~-~~t~~~~tl~~lllGv~~G~~-n~w~wi~re   99 (100)
T TIGR02230        47 LIGWSVAIPTLLGVAVGIWLDRH-YPSPFSWTLTMLIVGVVIGCL-NAWHWVSRE   99 (100)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhh-cCCCcHHHHHHHHHHHHHHHH-HHHHHHhcc
Confidence            57788888888888888888776 554665668889999999974 567776653

This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.

>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.24  E-value=0.34  Score=37.82  Aligned_cols=94  Identities=19%  Similarity=0.256  Sum_probs=55.2

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHhhccCCCC-CCCC-CcccchhhhHHHHHHHHHHHHHHHHHHHHhhhhhcccchHH
Q 028400           90 REKSEELKARLRQLAERAERDEYRELVKDILPK-SSAT-EPFSSYKDQLGFGLHVVLIMFTGYLVGYLAFRALFSHSTAM  167 (209)
Q Consensus        90 ~~~spEl~ArlekLr~~~eereY~~Mtk~v~~~-~~~~-~~~~~~k~ql~~v~n~lvtvfa~F~~gy~~~~~~~~~~~~~  167 (209)
                      ..|++++++|..+|.+....|.     ++.... +... +..+++.+.+..-.-||-.+.-|-.+||+.=+| |+-+|  
T Consensus         3 ~~rdd~ld~r~~~l~~dlaar~-----kd~~~~~~~~~a~s~k~~~~a~klssefIsGilVGa~iG~llD~~-agTsP--   74 (116)
T COG5336           3 GKRDDSLDKRNTELLADLAARI-----KDAAEGAEKSSAESIKGYAQAFKLSSEFISGILVGAGIGWLLDKF-AGTSP--   74 (116)
T ss_pred             CCccchHHHHHHHHHHHHHHHh-----hhhccccccccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh-cCCCc--
Confidence            3467888888888877776532     233222 1111 223444455566666777666777788887665 55344  


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 028400          168 SAAGGILGLVCGMLVETLLFIIRSSNH  194 (209)
Q Consensus       168 ~~~~~i~glv~~l~~E~~lfiiR~~~~  194 (209)
                        .|+|+++++||.+- ++-|.|....
T Consensus        75 --wglIv~lllGf~AG-~lnv~Rsag~   98 (116)
T COG5336          75 --WGLIVFLLLGFGAG-VLNVLRSAGK   98 (116)
T ss_pred             --HHHHHHHHHHHHHH-HHHHHHHhcc
Confidence              45777777777644 3455565433

>PF09527 ATPase_gene1: Putative F0F1-ATPase subunit (ATPase_gene1)

Probab=94.94  E-value=0.19  Score=33.79  Aligned_cols=43  Identities=21%  Similarity=0.492  Sum_probs=34.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHHHHHH
Q 028400          137 GFGLHVVLIMFTGYLVGYLAFRALFSHSTAMSAAGGILGLVCGM  180 (209)
Q Consensus       137 ~~v~n~lvtvfa~F~~gy~~~~~~~~~~~~~~~~~~i~glv~~l  180 (209)
                      ..+++++++++.++..||++-++. +..|.+.+.++++|++.|+
T Consensus         5 ~lg~~~~~~i~~g~~~G~~lD~~~-~t~p~~~~~g~llG~~~g~   47 (55)
T PF09527_consen    5 QLGFTMAAPILVGFFLGYWLDKWF-GTSPWFTLIGLLLGIAAGF   47 (55)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHc-CCChHHHHHHHHHHHHHHH
Confidence            458888899999999999998884 4357666788888888875

>PF11712 Vma12: Endoplasmic reticulum-based factor for assembly of V-ATPase; InterPro: IPR021013 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=89.97  E-value=3  Score=33.27  Aligned_cols=94  Identities=18%  Similarity=0.106  Sum_probs=50.5

Q ss_pred             CCCCCCHH-HHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCcc-----------cchhhhHHHH---HHHHH-HHHHHHH
Q 028400           88 KPREKSEE-LKARLRQLAERAERDEYRELVKDILPKSSATEPF-----------SSYKDQLGFG---LHVVL-IMFTGYL  151 (209)
Q Consensus        88 ~~~~~spE-l~ArlekLr~~~eereY~~Mtk~v~~~~~~~~~~-----------~~~k~ql~~v---~n~lv-tvfa~F~  151 (209)
                      +|+|+-|+ =.+..+++.+...+.|-++--+=+.+-.......           .+...++.-+   +-+++ .+++.|+
T Consensus        12 p~~~~~~~~s~E~~a~le~Lr~~~ee~eY~~mv~~~~~~~~~~~~~~~~~~~~~~t~~~~~k~~~~qls~v~Nilvsv~~   91 (142)
T PF11712_consen   12 PPPPPKPRPSPELKARLERLRAEQEEREYQRMVRNVDPSQSFSQTPAFGSDEPEDTPAQELKSVKRQLSTVFNILVSVFA   91 (142)
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccccCCcCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44556777 5566777777777777776665555433322221           1122333322   22344 3334444


Q ss_pred             HHHHhhhhhcccch-HHH-HHHHHHHHHHHHHH
Q 028400          152 VGYLAFRALFSHST-AMS-AAGGILGLVCGMLV  182 (209)
Q Consensus       152 ~gy~~~~~~~~~~~-~~~-~~~~i~glv~~l~~  182 (209)
                      ++++ +-|+..... .+. ..+++||+++|+++
T Consensus        92 ~~~~-~~~~~~~~~~~~~~~~Rvllgl~~al~v  123 (142)
T PF11712_consen   92 VFFA-GWYWAGYSFGGWSFPYRVLLGLFGALLV  123 (142)
T ss_pred             HHHH-HHHHHHHhhcccchHHHHHHHHHHHHHH
Confidence            4444 444443233 233 88999999999874

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. The yeast vacuolar proton-translocating ATPase (V-ATPase) is the best characterised member of the V-ATPase family. A total of thirteen genes are required for encoding the subunits of the enzyme complex itself and an additional three for providing factors necessary for the assembly of the whole. Vma12 is one of these latter, all three of which are localised to the endoplasmic reticulum [].

>PF11241 DUF3043: Protein of unknown function (DUF3043); InterPro: IPR021403 Some members in this family of proteins with unknown function are annotated as membrane proteins

Probab=87.85  E-value=11  Score=31.45  Aligned_cols=94  Identities=9%  Similarity=0.110  Sum_probs=43.7

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHhhccCCC--CCCCCCcccchhhhH----HHHHHHHH-HHHHHHHHHHHhhhhhcccch
Q 028400           93 SEELKARLRQLAERAERDEYRELVKDILP--KSSATEPFSSYKDQL----GFGLHVVL-IMFTGYLVGYLAFRALFSHST  165 (209)
Q Consensus        93 spEl~ArlekLr~~~eereY~~Mtk~v~~--~~~~~~~~~~~k~ql----~~v~n~lv-tvfa~F~~gy~~~~~~~~~~~  165 (209)
                      ..|.+++-..=++++.+++|++|......  +..+.++..-|-+++    ..+.++++ .++..++++++..   .+ ..
T Consensus        25 rKeak~~~R~~~r~~r~~~r~aM~~GDeryLp~RDrGP~Rr~vRD~VDsR~~i~e~fmP~alv~lv~~~v~~---~~-~~  100 (170)
T PF11241_consen   25 RKEAKKRAREARRERRARQREAMMTGDERYLPPRDRGPVRRYVRDYVDSRRNIGEFFMPVALVLLVLSFVVP---SP-QV  100 (170)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcChhhcCCcccccchhhhhhhhhhcccchHHHHHHHHHHHHHHHHHcc---cH-HH
Confidence            34444444444555666788889766532  233344444432222    33444444 3333333333300   00 11


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhc
Q 028400          166 AMSAAGGILGLVCGMLVETLLFIIRS  191 (209)
Q Consensus       166 ~~~~~~~i~glv~~l~~E~~lfiiR~  191 (209)
                      ...++-++.++++.+++|.+ ++-|.
T Consensus       101 ~~~~~~~~~~~~~~~iid~~-~l~r~  125 (170)
T PF11241_consen  101 QLYVTLAMYVLLLLVIIDGV-ILGRR  125 (170)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence            11244455566666777876 44443

This cannot be confirmed.

>PF11286 DUF3087: Protein of unknown function (DUF3087); InterPro: IPR021438 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria

Probab=84.86  E-value=2.6  Score=35.10  Aligned_cols=48  Identities=23%  Similarity=0.247  Sum_probs=26.1

Q ss_pred             chhhhHHHHHHHHHHHHHHH--HHHHHhhhhhccc----chHHHHHHHHHHHHHH
Q 028400          131 SYKDQLGFGLHVVLIMFTGY--LVGYLAFRALFSH----STAMSAAGGILGLVCG  179 (209)
Q Consensus       131 ~~k~ql~~v~n~lvtvfa~F--~~gy~~~~~~~~~----~~~~~~~~~i~glv~~  179 (209)
                      .||+++-.+.=.++..++.+  +||..+ -++||.    |..|+++|+|+|+++.
T Consensus        10 ~YRk~~n~v~~~~v~~lai~sl~~s~ll-I~lFg~~~~~nf~~NllGVil~~~~~   63 (165)
T PF11286_consen   10 RYRKHLNRVIVACVASLAILSLAFSQLL-IALFGGESGGNFHWNLLGVILGLLLT   63 (165)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHcCCCCCCceeeeHHHHHHHHHHH
Confidence            46777644433334333322  222222 233664    4446799999998875

>PF06645 SPC12: Microsomal signal peptidase 12 kDa subunit (SPC12); InterPro: IPR009542 This family consists of several microsomal signal peptidase 12 kDa subunit proteins

Probab=83.84  E-value=3.2  Score=30.05  Aligned_cols=23  Identities=22%  Similarity=0.420  Sum_probs=14.8

Q ss_pred             HHHHHHHHHHH--HHHHHHHhhhhh
Q 028400          138 FGLHVVLIMFT--GYLVGYLAFRAL  160 (209)
Q Consensus       138 ~v~n~lvtvfa--~F~~gy~~~~~~  160 (209)
                      -..+.++++++  +|++||+..++-
T Consensus        11 ~l~~~il~~~~iisfi~Gy~~q~~~   35 (76)
T PF06645_consen   11 KLMQYILIISAIISFIVGYITQSFS   35 (76)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555554444  888999887763

Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains. This family represents the 12 kDa subunit (SPC12).; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane

>PF14362 DUF4407: Domain of unknown function (DUF4407)

Probab=82.65  E-value=7.1  Score=34.61  Aligned_cols=47  Identities=23%  Similarity=0.369  Sum_probs=29.4

Q ss_pred             hhhHHHHHHHHH-HHHHHHHHHHHhhhhhcccchHHH-HHHHHHHHHHHH
Q 028400          133 KDQLGFGLHVVL-IMFTGYLVGYLAFRALFSHSTAMS-AAGGILGLVCGM  180 (209)
Q Consensus       133 k~ql~~v~n~lv-tvfa~F~~gy~~~~~~~~~~~~~~-~~~~i~glv~~l  180 (209)
                      .+..++|.=|++ .++++|.+||++..+ |+.+.... +.|++.|+++..
T Consensus        13 ~k~~~~G~~vl~ta~la~~s~~~a~~~~-~~~~~~~ai~~glvwgl~I~~   61 (301)
T PF14362_consen   13 NKYAGIGAAVLFTALLAGLSGGYALYTV-FGGPVWAAIPFGLVWGLVIFN   61 (301)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccchHHHHHHHHHHHHHHHH
Confidence            456778888777 577888888888776 54232222 444455555544

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	209
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.5 bits (104), Expect = 1e-05
 Identities = 40/262 (15%), Positives = 72/262 (27%), Gaps = 85/262 (32%)

Query: 2   VSESDNPEQNSSG--LIIS-------------------NNDSIRSFLLSASEDVQLPREL 40
               D P +  +     +S                   N D + + ++ +S +V  P E 
Sbjct: 313 CRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTT-IIESSLNVLEPAEY 371

Query: 41  RETALNLSSLNKA---PYKSIRQIWVGSLPSIRPDLFRLFSGSEFVFTSPKPREKSEELK 97
           R+    LS    +   P   +  IW   + S    +         V   PK      E  
Sbjct: 372 RKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPK------EST 425

Query: 98  ARL--RQLAERAERDEYRELVKDILPKSSATEPFSSYKDQLGFGL-HVVLIMFTGYLVGY 154
             +    L  + + +    L + I+           Y     F    ++      Y   +
Sbjct: 426 ISIPSIYLELKVKLENEYALHRSIV---------DHYNIPKTFDSDDLIPPYLDQYFYSH 476

Query: 155 LA--------------FRALF-----------SHSTAMSAAGGILGLVC----------- 178
           +               FR +F             STA +A+G IL  +            
Sbjct: 477 IGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICD 536

Query: 179 -----GMLVETLL-FIIRSSNH 194
                  LV  +L F+ +   +
Sbjct: 537 NDPKYERLVNAILDFLPKIEEN 558

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00