Citrus Sinensis ID: 028405

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------21
Protein Sequence
MATGAALLSLRSPPFLSNPKTLHQSPCRASPSFLPIKAAATSSSSSLPTLPLKTPKITPLSPLLNDSTRTVTTLLSLSGFLLKFAISKIPTLPQPTTNLVQSVGPLFFAALRERPSGSLNTPLTVVAAGLAKWLDIYSGVLLVRVLLSWFPNIPWERQPLSAIRDLCDPYLNLFRNIIPPVFDTLDVSPLLAFAVLGTLAQILTFSRGA
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccccHEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHcccHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHcHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
MATGAALlslrsppflsnpktlhqspcraspsflpikaaatssssslptlplktpkitplspllndstRTVTTLLSLSGFLLKFAiskiptlpqpttnlvqsVGPLFFAAlrerpsgslntpLTVVAAGLAKWLDIYSGVLLVRVLLswfpnipwerqplsaiRDLCDPYlnlfrniippvfdtldvsplLAFAVLGTLAQILTFSRGA
Flexible Loop (DISEMBL)
matgaallslrsppflsnPKTLHQSPCRASPSFLPIKAAATssssslptlplktpkitplspllndsTRTVTTLLSLSGFLLKFAISKIPTLPQPTTNLVQSVGPLFFAALRERPSGSLNTPLTVVAAGLAKWLDIYSGVLLVRVLLSWFPNIPWERQPLSAIRDLCDPYLNLFRNIIPPVFDTLDVSPLLAFAVLGTLAQILTFSRGA
Low Complexity Region (SEG)
MATGAALLSLRSPPFLSNPKTLHQSPCRASPSFLpikaaatssssslptlplktpkitplspllNDstrtvttllslsGFLLKFAISKIPTLPQPTTNLVQSVGPLFFAALRERPSGSLNTPLTVVAAGLAKWLDIYSGVLLVRVLLSWFPNIPWERQPLSAIRDLCDPYLNLFRNIIPPVFDTLDVSPLLAFAVLGTLAQILTFSRGA
Disordered region (IsUnstruct)
**************************************************************LLNDSTRTVTTLLSLSGFLLKFAISKIPTLPQPTTNLVQSVGPLFFAALRERPSGSLNTPLTVVAAGLAKWLDIYSGVLLVRVLLSWFPNIPWERQPLSAIRDLCDPYLNLFRNIIPPVFDTLDVSPLLAFAVLGTLAQILTF****
Disordered Region (DISOPRED)
*****A**SLRSPPF*********************************************************TLLSLSGFLLKFAISKIPTLPQPTTNLVQSVGPLFFAALRERPSGSLNTPLTVVAAGLAKWLDIYSGVLLVRVLLSWFPNIPWERQPLSAIRDLCDPYLNLFRNIIPPVFDTLDVSPLLAFAVLGTLAQILTFSRG*
Disordered Region (DISEMBL)
MATGAALLSLRSPPFLSNPKTLHQSPCRASPSFLPIKAAATSSSSSLPTLPLKTPKITPLSPLLNDSTRTVTTLLSLSGFLLKFAISKIPTLPQPTTNLVQSVGPLFFAALRERPSGSLNTPLTVVAAGLAKWLDIYSGVLLVRVLLSWFPNIPWERQPLSAIRDLCDPYLNLFRNIIPPVFDTLDVSPLLAFAVLGTLAQILTFSRGA
Disordered Region (DISPRO)
*********LRSPPFLSNPK*L*****************************************LNDSTRTVTTLLSLSGFLLKFAISKIPTLPQPTTNLVQSVGPLFFAALRERPSGSLNTPLTVVAAGLAKWLDIYSGVLLVRVLLSWFPNIPWERQPLSAIRDLCDPYLNLFRNIIPPVFDTLDVSPLLAFAVLGTLAQILTFSR**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MATGAALLSLRSPPFLSNPKTLHQSPCRASPSFLPIKAAATSSSSSLPTLPLKTPKITPLSPLLNDSTRTVTTLLSLSGFLLKFAISKIPTLPQPTTNLVQSVGPLFFAALRERPSGSLNTPLTVVAAGLAKWLDIYSGVLLVRVLLSWFPNIPWERQPLSAIRDLCDPYLNLFRNIIPPVFDTLDVSPLLAFAVLGTLAQILTFSRGA
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	209	2.2.26 [Sep-21-2011]
O78424	91	Uncharacterized protein y	yes	no	0.287	0.659	0.442	8e-10
Q9TM45	91	Uncharacterized protein y	N/A	no	0.339	0.780	0.388	1e-08
P28255	98	Uncharacterized protein y	N/A	no	0.401	0.857	0.341	1e-06
Q1XDD4	95	Uncharacterized protein y	N/A	no	0.282	0.621	0.4	2e-06
P51353	95	Uncharacterized protein y	N/A	no	0.282	0.621	0.4	2e-06
O31729	90	Uncharacterized membrane	yes	no	0.291	0.677	0.396	0.0003

>sp|O78424|YCF19_GUITH Uncharacterized protein ycf19 OS=Guillardia theta GN=ycf19 PE=3 SV=1

 Score = 63.5 bits (153), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 42/61 (68%), Gaps = 1/61 (1%)

Query: 144 RVLLSWFPNIPWERQPLSAIRDLCDPYLNLFRNIIPPVFDTLDVSPLLAFAVLGTLAQIL 203
           RV L+WFPN+ W  QP  ++  + DPYL +FR I+PP+   +D+SP+L F +L  + QI+
Sbjct: 26  RVSLTWFPNVNWYGQPFYSLSRITDPYLKMFRGIVPPLIG-IDISPILGFILLQCIMQIV 84

Query: 204 T 204
           +
Sbjct: 85  S 85

Guillardia theta (taxid: 55529)

>sp|Q9TM45|YCF19_CYACA Uncharacterized protein ycf19 OS=Cyanidium caldarium GN=ycf19 PE=3 SV=1

 Score = 59.7 bits (143), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 28/72 (38%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 133 WLDIYSGVLLVRVLLSWFPNIPWERQPLSAIRDLCDPYLNLFRNIIPPVFDTLDVSPLLA 192
           +L IY  ++L+R+ L WFPNI W  QP  ++  L DPYLNLF  + P  F  +D SP++ 
Sbjct: 15  FLQIYIVLILLRMSLGWFPNINWYSQPFYSLSQLSDPYLNLFHGVFPS-FLGIDFSPIIG 73

Query: 193 FAVLGTLAQILT 204
             ++  + ++L+
Sbjct: 74  ITLIDFIIELLS 85

Cyanidium caldarium (taxid: 2771)

>sp|P28255|YCF19_GALSU Uncharacterized protein ycf19 OS=Galdieria sulphuraria GN=ycf19 PE=3 SV=1

 Score = 52.8 bits (125), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 1/85 (1%)

Query: 119 LNTPLTVVAAGLAKWLDIYSGVLLVRVLLSWFPNIPWERQPLSAIRDLCDPYLNLFRNII 178
           L   L ++   + ++  IY   L +RV L+W   I W  QP   ++ L DPYLNLFR  +
Sbjct: 6   LFVILKIILGVITEFCRIYLFALSIRVFLAWIVTINWYTQPYIVLKKLTDPYLNLFRGTL 65

Query: 179 PPVFDTLDVSPLLAFAVLGTLAQIL 203
           P +   +D S +L F  L  + ++L
Sbjct: 66  PLILG-MDFSSMLGFLFLECVIKLL 89

Galdieria sulphuraria (taxid: 130081)

>sp|Q1XDD4|YCF19_PORYE Uncharacterized protein ycf19 OS=Porphyra yezoensis GN=ycf19 PE=3 SV=1

 Score = 52.4 bits (124), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 34/60 (56%), Gaps = 1/60 (1%)

Query: 148 SWFPNIPWERQPLSAIRDLCDPYLNLFRNIIPPVFDTLDVSPLLAFAVLGTLAQILTFSR 207
           +WFP + W  +P  ++  + DPYL LFR  IPP+F  +D+SP+L    L  L  I    R
Sbjct: 33  AWFPTVNWYNEPFCSLNRITDPYLKLFRGSIPPMFG-MDMSPMLGIIFLQCLMVIFNNVR 91

Porphyra yezoensis (taxid: 2788)

>sp|P51353|YCF19_PORPU Uncharacterized protein ycf19 OS=Porphyra purpurea GN=ycf19 PE=3 SV=1

 Score = 52.4 bits (124), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 34/60 (56%), Gaps = 1/60 (1%)

Query: 148 SWFPNIPWERQPLSAIRDLCDPYLNLFRNIIPPVFDTLDVSPLLAFAVLGTLAQILTFSR 207
           +WFP + W  +P  ++  + DPYL LFR  IPP+F  +D+SP+L    L  L  I    R
Sbjct: 33  AWFPTVNWYNEPFCSLNRITDPYLKLFRGSIPPMFG-MDMSPMLGIIFLQCLMVIFNNVR 91

Porphyra purpurea (taxid: 2787)

>sp|O31729|YLMG_BACSU Uncharacterized membrane protein YlmG OS=Bacillus subtilis (strain 168) GN=ylmG PE=3 SV=1

 Score = 45.4 bits (106), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/63 (39%), Positives = 38/63 (60%), Gaps = 2/63 (3%)

Query: 134 LDIYSGVLLVRVLLSWFPNIPWERQPLSAIRDLCDPYLNLFRNIIPPVFDTLDVSPLLAF 193
           + IYS  L++ + +SW P+   E      +  +C+PYL  FR IIPP+   LD+SP++A 
Sbjct: 14  ITIYSFALIIYIFMSWVPSTR-ETAVGRFLASICEPYLEPFRKIIPPI-AMLDISPIVAI 71

Query: 194 AVL 196
            VL
Sbjct: 72  LVL 74

Bacillus subtilis (strain 168) (taxid: 224308)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	209
255572626	226	conserved hypothetical protein [Ricinus	0.880	0.814	0.666	2e-58
15234345	218	YGGT family protein [Arabidopsis thalian	0.789	0.756	0.662	5e-54
224065445	249	predicted protein [Populus trichocarpa]	0.722	0.606	0.676	6e-53
21592772	218	unknown [Arabidopsis thaliana]	0.789	0.756	0.651	1e-52
297799182	210	YGGT family protein [Arabidopsis lyrata	0.842	0.838	0.6	4e-52
388510800	219	unknown [Lotus japonicus]	0.856	0.817	0.598	1e-50
356526334	204	PREDICTED: uncharacterized protein LOC10	0.818	0.838	0.643	2e-50
225433658	233	PREDICTED: uncharacterized protein LOC10	0.535	0.480	0.866	5e-50
351722334	192	uncharacterized protein LOC100500209 [Gl	0.636	0.692	0.731	2e-48
297829292	232	hypothetical protein ARALYDRAFT_478063 [	0.799	0.719	0.598	2e-47

>gi|255572626|ref|XP_002527246.1| conserved hypothetical protein [Ricinus communis] gi|223533339|gb|EEF35090.1| conserved hypothetical protein [Ricinus communis]

 Score =  231 bits (588), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 130/195 (66%), Positives = 148/195 (75%), Gaps = 11/195 (5%)

Query: 22  LHQSPCRASPSFLPIKAAATS---SSSSLPTLPLKTPKITPLSPLLNDSTRTVTTLLSLS 78
           + Q P R+    L IK  ++    SSS +P LP  T        LL DSTRTVTT+L+L+
Sbjct: 34  IQQKPPRSLSLSLSIKTPSSGVRVSSSQIPVLPSHTES---QQSLLTDSTRTVTTILALA 90

Query: 79  GFLLKFAISKIPTLP----QPTTNLVQSVGPLFFAALRERPSGSLNTPLTVVAAGLAKWL 134
             L +  +++I  LP    Q TTNL  SVGPLFFAA+R+RPSG LNTPLTVVAAGLAKWL
Sbjct: 91  FSLSRLFLNQISFLPKLALQNTTNLTHSVGPLFFAAIRDRPSGYLNTPLTVVAAGLAKWL 150

Query: 135 DIYSGVLLVRVLLSWFPNIPWERQPLSAIRDLCDPYLNLFRNIIPPVFDTLDVSPLLAFA 194
           DIYSGVL+VRVLLSWFPNIPW+RQPLSAIRDLCDPYLNLFRNIIPP+FDTLDVSPLLAFA
Sbjct: 151 DIYSGVLMVRVLLSWFPNIPWDRQPLSAIRDLCDPYLNLFRNIIPPIFDTLDVSPLLAFA 210

Query: 195 VLGTLAQILTFSRGA 209
           VLG L  IL+ S GA
Sbjct: 211 VLGMLGSILS-SSGA 224

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15234345|ref|NP_194528.1| YGGT family protein [Arabidopsis thaliana] gi|4455358|emb|CAB36768.1| putative protein [Arabidopsis thaliana] gi|7269653|emb|CAB79601.1| putative protein [Arabidopsis thaliana] gi|110741138|dbj|BAE98662.1| hypothetical protein [Arabidopsis thaliana] gi|332660017|gb|AEE85417.1| YGGT family protein [Arabidopsis thaliana]

 Score =  216 bits (550), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 118/178 (66%), Positives = 136/178 (76%), Gaps = 13/178 (7%)

Query: 36  IKAAATSSSSSLPTLPLKTPKITPLSPLLNDSTRTVTTLLSLSGFLLKFAISKIPTL--- 92
           + +A TSSS   P L  K P   P S    DSTR++TTL+ L+G ++K  I K+      
Sbjct: 49  VSSAVTSSS---PVLSSKPPSQFPFS----DSTRSITTLVLLAGVVIKSLIQKLSVAIVN 101

Query: 93  --PQPTTNLVQSVGPLFFAALRERPSGSLNTPLTVVAAGLAKWLDIYSGVLLVRVLLSWF 150
             PQ   +  ++  PLFFA+LR+RP+G LNTPLTVVAAGL+KWLDIYSGVL+VRVLLSWF
Sbjct: 102 LSPQIQASF-RTASPLFFASLRDRPAGYLNTPLTVVAAGLSKWLDIYSGVLMVRVLLSWF 160

Query: 151 PNIPWERQPLSAIRDLCDPYLNLFRNIIPPVFDTLDVSPLLAFAVLGTLAQILTFSRG 208
           PNIPW+RQPLSAIRDLCDPYLNLFRNIIPPVFDTLDVSPLLAFAVLGTL  IL  SRG
Sbjct: 161 PNIPWDRQPLSAIRDLCDPYLNLFRNIIPPVFDTLDVSPLLAFAVLGTLGSILNNSRG 218

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224065445|ref|XP_002301821.1| predicted protein [Populus trichocarpa] gi|222843547|gb|EEE81094.1| predicted protein [Populus trichocarpa]

 Score =  212 bits (540), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 113/167 (67%), Positives = 126/167 (75%), Gaps = 16/167 (9%)

Query: 58  TPLSPLLNDSTRTVTTLLSLSGFLLKFAISKIPTL-------PQP---------TTNLVQ 101
           T   P L  STRTV T+L+L+  L +  ++ I          P P          +NLV 
Sbjct: 81  TESQPQLIGSTRTVATILTLALSLSRIFVTSIQKFVLSHNLFPTPDQLVAIRALQSNLVH 140

Query: 102 SVGPLFFAALRERPSGSLNTPLTVVAAGLAKWLDIYSGVLLVRVLLSWFPNIPWERQPLS 161
           SVGP FFAAL++RP+G LNTPLTVVAAGLAKWLDIYSGVL+VRVLLSWFPNIPW+RQPLS
Sbjct: 141 SVGPFFFAALKDRPTGYLNTPLTVVAAGLAKWLDIYSGVLMVRVLLSWFPNIPWDRQPLS 200

Query: 162 AIRDLCDPYLNLFRNIIPPVFDTLDVSPLLAFAVLGTLAQILTFSRG 208
           AIRDLCDPYLNLFRNIIPP+FDTLDVSPLLAFAVLGTL  IL  SRG
Sbjct: 201 AIRDLCDPYLNLFRNIIPPIFDTLDVSPLLAFAVLGTLGSILNSSRG 247

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21592772|gb|AAM64721.1| unknown [Arabidopsis thaliana]

 Score =  211 bits (537), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 116/178 (65%), Positives = 134/178 (75%), Gaps = 13/178 (7%)

Query: 36  IKAAATSSSSSLPTLPLKTPKITPLSPLLNDSTRTVTTLLSLSGFLLKFAISKIPTL--- 92
           + +A TSSS   P L  K P   P S    DSTR++T L+ L+G ++K  I K+      
Sbjct: 49  VSSAVTSSS---PVLSSKPPSQFPFS----DSTRSITNLVLLAGVVIKSLIQKLSVAIVN 101

Query: 93  --PQPTTNLVQSVGPLFFAALRERPSGSLNTPLTVVAAGLAKWLDIYSGVLLVRVLLSWF 150
             PQ   +  ++  PLFFA+LR+RP+G LNTPLTVVAAGL+KWLDIYSGVL+VRVLLSWF
Sbjct: 102 LSPQIQASF-RTASPLFFASLRDRPAGYLNTPLTVVAAGLSKWLDIYSGVLMVRVLLSWF 160

Query: 151 PNIPWERQPLSAIRDLCDPYLNLFRNIIPPVFDTLDVSPLLAFAVLGTLAQILTFSRG 208
           PNIPW+ QPLSAIRDLCDPYLNLFRNIIPPVFDTLDVSPLLAFAVLGTL  IL  SRG
Sbjct: 161 PNIPWDGQPLSAIRDLCDPYLNLFRNIIPPVFDTLDVSPLLAFAVLGTLGSILNNSRG 218

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297799182|ref|XP_002867475.1| YGGT family protein [Arabidopsis lyrata subsp. lyrata] gi|297313311|gb|EFH43734.1| YGGT family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  210 bits (534), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 123/205 (60%), Positives = 142/205 (69%), Gaps = 29/205 (14%)

Query: 11  RSPPF---LSNPKTLHQSPCRASPSFLPIKAAATSSSSSLPTLPLKTPKITPLSPLLNDS 67
           R P F   L NP+T+             + +A TS S   P L  K P   P S    DS
Sbjct: 27  RKPSFNLSLHNPRTI-------------VSSAVTSLS---PVLSTKPPSQFPFS----DS 66

Query: 68  TRTVTTLLSLSGFLLKFAISKIPTL-----PQPTTNLVQSVGPLFFAALRERPSGSLNTP 122
           TR++TTL  L+G + K  I K+        PQ   + +++  PLFFA+LR+RP+G LNTP
Sbjct: 67  TRSITTLALLAGVVTKSLIQKLSVAIVNISPQIQAS-IRTASPLFFASLRDRPAGYLNTP 125

Query: 123 LTVVAAGLAKWLDIYSGVLLVRVLLSWFPNIPWERQPLSAIRDLCDPYLNLFRNIIPPVF 182
           LTVVAAGL+KWLDIYSGVL+VRVLLSWFPNIPW+RQPLSAIRDLCDPYLNLFRNIIPPVF
Sbjct: 126 LTVVAAGLSKWLDIYSGVLMVRVLLSWFPNIPWDRQPLSAIRDLCDPYLNLFRNIIPPVF 185

Query: 183 DTLDVSPLLAFAVLGTLAQILTFSR 207
           DTLDVSPLLAFAVLGTL  IL  SR
Sbjct: 186 DTLDVSPLLAFAVLGTLGSILNNSR 210

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388510800|gb|AFK43466.1| unknown [Lotus japonicus]

 Score =  204 bits (520), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 115/192 (59%), Positives = 132/192 (68%), Gaps = 13/192 (6%)

Query: 12  SPPFLSNPKTLHQSPCRASPSFLPIKAAATSSSSSLPTLPLKTPKITPLSPLLNDSTRTV 71
            PP    P+ LH    R + +   +  + T++  + P   ++    T LS     STRTV
Sbjct: 36  HPPQCHLPRLLHNH--RQTRT---VSCSLTTNQRNSPVCEIRESAHTTLS----GSTRTV 86

Query: 72  TTLLSLSGFLLKFAISKIPTLPQPTTNLVQSVGPLFFAALRERPSGSLNTPLTVVAAGLA 131
           TTLLS++    K     IP L     ++      LFFA+LR+RP G LNTPLTVVAAGL 
Sbjct: 87  TTLLSMALLCAK----AIPPLANGAISMSVGGSSLFFASLRDRPEGYLNTPLTVVAAGLG 142

Query: 132 KWLDIYSGVLLVRVLLSWFPNIPWERQPLSAIRDLCDPYLNLFRNIIPPVFDTLDVSPLL 191
           KWLDIYSGVL+VRVLLSWFPNIPWERQPLSAIRDLCDPYLNLFRNIIPPVFDTLDVSPLL
Sbjct: 143 KWLDIYSGVLMVRVLLSWFPNIPWERQPLSAIRDLCDPYLNLFRNIIPPVFDTLDVSPLL 202

Query: 192 AFAVLGTLAQIL 203
           AFAVLGTL  IL
Sbjct: 203 AFAVLGTLGSIL 214

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356526334|ref|XP_003531773.1| PREDICTED: uncharacterized protein LOC100819562 [Glycine max]

 Score =  204 bits (518), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 119/185 (64%), Positives = 136/185 (73%), Gaps = 14/185 (7%)

Query: 30  SPSFLPIKAAATSSSSSLPT------LPLKTPKITPLSPLLNDSTRTVTTLLSLSGFLLK 83
           +P+ L  K  A + S +LP+      L LK  K+     +L  STRTVTTL+ L+  L+K
Sbjct: 19  NPTSLSFKPLAFTKSLALPSAQRPTSLRLKC-KMESDGDILRGSTRTVTTLMGLAVLLMK 77

Query: 84  FAISKIPTLPQPTTNL---VQSVGPLFFAALRERPS--GSLNTPLTVVAAGLAKWLDIYS 138
            A   IP L     +    V ++G LF A+LR+RPS  G+LNTPLTVVAAGL KWLDIYS
Sbjct: 78  KA--AIPVLNININSSSNSVSTMGALFLASLRDRPSASGALNTPLTVVAAGLGKWLDIYS 135

Query: 139 GVLLVRVLLSWFPNIPWERQPLSAIRDLCDPYLNLFRNIIPPVFDTLDVSPLLAFAVLGT 198
           GVL+VRVLLSWFPNIPWERQPLSAIRDLCDPYLNLFRNIIPPVFDTLDVSPLLAFAVLGT
Sbjct: 136 GVLMVRVLLSWFPNIPWERQPLSAIRDLCDPYLNLFRNIIPPVFDTLDVSPLLAFAVLGT 195

Query: 199 LAQIL 203
           L  IL
Sbjct: 196 LGSIL 200

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225433658|ref|XP_002265251.1| PREDICTED: uncharacterized protein LOC100251416 [Vitis vinifera] gi|296089606|emb|CBI39425.3| unnamed protein product [Vitis vinifera]

 Score =  202 bits (515), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 97/112 (86%), Positives = 105/112 (93%)

Query: 97  TNLVQSVGPLFFAALRERPSGSLNTPLTVVAAGLAKWLDIYSGVLLVRVLLSWFPNIPWE 156
           +++V +VGPLFFAA R+RPSG LNTPLTVVAAG+AKWLDIYSGVL+VRVLLSWFPNIPW+
Sbjct: 120 SSVVCAVGPLFFAAARDRPSGYLNTPLTVVAAGMAKWLDIYSGVLMVRVLLSWFPNIPWD 179

Query: 157 RQPLSAIRDLCDPYLNLFRNIIPPVFDTLDVSPLLAFAVLGTLAQILTFSRG 208
           RQPLSAIRDLCDPYLNLFRNIIPPVFDTLDVSPLLAFAVLGTL  IL  SRG
Sbjct: 180 RQPLSAIRDLCDPYLNLFRNIIPPVFDTLDVSPLLAFAVLGTLGSILNNSRG 231

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351722334|ref|NP_001238520.1| uncharacterized protein LOC100500209 [Glycine max] gi|255629710|gb|ACU15204.1| unknown [Glycine max]

 Score =  197 bits (502), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 101/138 (73%), Positives = 118/138 (85%), Gaps = 5/138 (3%)

Query: 68  TRTVTTLLSLSGFLLKFAISKIPTLPQPTTNLVQSVGPLFFAALRERPS--GSLNTPLTV 125
           TRT++TL+ L+  L+K A + + ++    ++ V ++G LFFA+LR+RPS  G+LNTPLTV
Sbjct: 54  TRTLSTLMGLALLLMKKAATPVLSI---NSDSVSTMGTLFFASLRDRPSAGGALNTPLTV 110

Query: 126 VAAGLAKWLDIYSGVLLVRVLLSWFPNIPWERQPLSAIRDLCDPYLNLFRNIIPPVFDTL 185
           VAAGL KWLDIYSGVL+VRVLLSWFPNIPWERQPLSAIRDLC PYLNLFRNIIPPVFDTL
Sbjct: 111 VAAGLGKWLDIYSGVLMVRVLLSWFPNIPWERQPLSAIRDLCGPYLNLFRNIIPPVFDTL 170

Query: 186 DVSPLLAFAVLGTLAQIL 203
           DVSPLLAFAVLGTL  IL
Sbjct: 171 DVSPLLAFAVLGTLGSIL 188

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297829292|ref|XP_002882528.1| hypothetical protein ARALYDRAFT_478063 [Arabidopsis lyrata subsp. lyrata] gi|297328368|gb|EFH58787.1| hypothetical protein ARALYDRAFT_478063 [Arabidopsis lyrata subsp. lyrata]

 Score =  194 bits (494), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 106/177 (59%), Positives = 126/177 (71%), Gaps = 10/177 (5%)

Query: 40  ATSSSSSLPTLPLKTPKITPLSPLLNDSTRTVTTLLSLSGFLLKFAISKI--------PT 91
           + S+S   PT+P  T K T     L  STR++ TL +L+  + +    K+        P 
Sbjct: 58  SASASPMTPTIP--TEKSTTRPSTLTGSTRSLATLAALTIAVTRVLAQKLSLAIQTSSPA 115

Query: 92  LPQPTTNLVQSVGPLFFAALRERPSGSLNTPLTVVAAGLAKWLDIYSGVLLVRVLLSWFP 151
           +       + + GP+FFA+LR+RP G LNTPLTVVA G+ KWLDIYSGVL+VRVLLSWFP
Sbjct: 116 IADGLRFSLSTAGPVFFASLRDRPPGYLNTPLTVVAVGIKKWLDIYSGVLMVRVLLSWFP 175

Query: 152 NIPWERQPLSAIRDLCDPYLNLFRNIIPPVFDTLDVSPLLAFAVLGTLAQILTFSRG 208
           NIPWERQPLSAIRDLCDPYLNLFRNIIPP+FDTLDVSPLLAFAVLGTL  I+  S G
Sbjct: 176 NIPWERQPLSAIRDLCDPYLNLFRNIIPPIFDTLDVSPLLAFAVLGTLGSIVHGSTG 232

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	209
TAIR|locus:2132907	218	YLMG1-2 "AT4G27990" [Arabidops	0.598	0.573	0.761	1.2e-47
TAIR|locus:2079656	232	YLMG1-1 "AT3G07430" [Arabidops	0.607	0.547	0.726	1.6e-45
TAIR|locus:504956451	251	YLMG2 "AT5G21920" [Arabidopsis	0.325	0.270	0.547	3e-14
UNIPROTKB|Q3AAH5	87	CHY_2040 "Putative uncharacter	0.287	0.689	0.467	1.1e-09
TIGR_CMR|CHY_2040	87	CHY_2040 "conserved hypothetic	0.287	0.689	0.467	1.1e-09
UNIPROTKB|Q81WE1	87	BAS3749 "YlmG protein" [Bacill	0.334	0.804	0.405	2.6e-08
TIGR_CMR|BA_4037	87	BA_4037 "ylmG protein" [Bacill	0.334	0.804	0.405	2.6e-08
TAIR|locus:2158906	174	CCB3 "AT5G36120" [Arabidopsis	0.531	0.637	0.271	6.8e-08
UNIPROTKB|Q71XY4	96	LMOf2365_2061 "YGGT family pro	0.334	0.729	0.293	0.00038
UNIPROTKB|Q0BX65	102	HNE_3255 "Putative uncharacter	0.387	0.794	0.235	0.00065

TAIR|locus:2132907 YLMG1-2 "AT4G27990" [Arabidopsis thaliana (taxid:3702)]

 Score = 498 (180.4 bits), Expect = 1.2e-47, P = 1.2e-47
 Identities = 96/126 (76%), Positives = 109/126 (86%)

Query:    83 KFAISKIPTLPQPTTNLVQSVGPLFFAALRERPSGSLNTPLTVVAAGLAKWLDIYSGVLL 142
             K +++ +   PQ   +  ++  PLFFA+LR+RP+G LNTPLTVVAAGL+KWLDIYSGVL+
Sbjct:    94 KLSVAIVNLSPQIQASF-RTASPLFFASLRDRPAGYLNTPLTVVAAGLSKWLDIYSGVLM 152

Query:   143 VRVLLSWFPNIPWERQPLSAIRDLCDPYLNLFRNIIPPVFDTLDVSPLLAFAVLGTLAQI 202
             VRVLLSWFPNIPW+RQPLSAIRDLCDPYLNLFRNIIPPVFDTLDVSPLLAFAVLGTL  I
Sbjct:   153 VRVLLSWFPNIPWDRQPLSAIRDLCDPYLNLFRNIIPPVFDTLDVSPLLAFAVLGTLGSI 212

Query:   203 LTFSRG 208
             L  SRG
Sbjct:   213 LNNSRG 218

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016020 "membrane" evidence=IEA

GO:0009941 "chloroplast envelope" evidence=IDA

TAIR|locus:2079656 YLMG1-1 "AT3G07430" [Arabidopsis thaliana (taxid:3702)]

 Score = 478 (173.3 bits), Expect = 1.6e-45, P = 1.6e-45
 Identities = 93/128 (72%), Positives = 104/128 (81%)

Query:    82 LKFAI-SKIPTLPQPTTNLVQSVGPLFFAALRERPSGSLNTPLTVVAAGLAKWLDIYSGV 140
             L  AI +  P +       + + GP+FFA+LR+RP G LNTPLTVVA G+ KWLDIYSGV
Sbjct:   105 LSLAIQTSSPVIADGLRFSLSTAGPVFFASLRDRPPGYLNTPLTVVAVGIKKWLDIYSGV 164

Query:   141 LLVRVLLSWFPNIPWERQPLSAIRDLCDPYLNLFRNIIPPVFDTLDVSPLLAFAVLGTLA 200
             L+VRVLLSWFPNIPWERQPLSAIRDLCDPYLNLFRNIIPP+FDTLDVSPLLAFAVLGTL 
Sbjct:   165 LMVRVLLSWFPNIPWERQPLSAIRDLCDPYLNLFRNIIPPIFDTLDVSPLLAFAVLGTLG 224

Query:   201 QILTFSRG 208
              I+  S G
Sbjct:   225 SIVHGSTG 232

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009793 "embryo development ending in seed dormancy" evidence=NAS

GO:0016020 "membrane" evidence=IEA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0010020 "chloroplast fission" evidence=IMP

GO:0042651 "thylakoid membrane" evidence=IDA

GO:0090143 "nucleoid organization" evidence=IMP

GO:0009220 "pyrimidine ribonucleotide biosynthetic process" evidence=RCA

TAIR|locus:504956451 YLMG2 "AT5G21920" [Arabidopsis thaliana (taxid:3702)]

 Score = 183 (69.5 bits), Expect = 3.0e-14, P = 3.0e-14
 Identities = 40/73 (54%), Positives = 53/73 (72%)

Query:   125 VVAAGLAKWLDIYSGVLLVRVLLSWFPNIPWER-QPLSAIRDLCDPYLNLFRNIIPPVFD 183
             VVA GL  +L+IY+ +L+VR++L+WFP+ P     PLS    LCDPYLN+FR  IPP+  
Sbjct:   133 VVANGLINFLNIYNTILVVRLVLTWFPSAPPAIVNPLST---LCDPYLNIFRGFIPPL-G 188

Query:   184 TLDVSPLLAFAVL 196
              LD+SP+LAF VL
Sbjct:   189 GLDLSPILAFLVL 201

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

UNIPROTKB|Q3AAH5 CHY_2040 "Putative uncharacterized protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 140 (54.3 bits), Expect = 1.1e-09, P = 1.1e-09
 Identities = 29/62 (46%), Positives = 42/62 (67%)

Query:   135 DIYSGVLLVRVLLSWFPNIPWERQPLSAIRDLCDPYLNLFRNIIPPVFDTLDVSPLLAFA 194
             +IY  ++++RVLL+W P +      ++ I  L DPYLNLFR +IPPV   +D SP++AF 
Sbjct:    13 NIYGWLIIIRVLLTWIP-VNTYHPVVNFITSLTDPYLNLFRRLIPPV-GMIDFSPIVAFF 70

Query:   195 VL 196
             VL
Sbjct:    71 VL 72

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|CHY_2040 CHY_2040 "conserved hypothetical protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 140 (54.3 bits), Expect = 1.1e-09, P = 1.1e-09
 Identities = 29/62 (46%), Positives = 42/62 (67%)

Query:   135 DIYSGVLLVRVLLSWFPNIPWERQPLSAIRDLCDPYLNLFRNIIPPVFDTLDVSPLLAFA 194
             +IY  ++++RVLL+W P +      ++ I  L DPYLNLFR +IPPV   +D SP++AF 
Sbjct:    13 NIYGWLIIIRVLLTWIP-VNTYHPVVNFITSLTDPYLNLFRRLIPPV-GMIDFSPIVAFF 70

Query:   195 VL 196
             VL
Sbjct:    71 VL 72

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q81WE1 BAS3749 "YlmG protein" [Bacillus anthracis (taxid:1392)]

 Score = 127 (49.8 bits), Expect = 2.6e-08, P = 2.6e-08
 Identities = 30/74 (40%), Positives = 44/74 (59%)

Query:   134 LDIYSGVLLVRVLLSWFPNIPWERQPLSAIRDLCDPYLNLFRNIIPPVFDTLDVSPLLA- 192
             ++IYS  L++ +LLSWFP    E      +  +C+PYL  FR  IPP+   +D+SPL+A 
Sbjct:    12 IEIYSWALIIYILLSWFPGAK-ESTFGDFLARICEPYLEPFRRFIPPL-GMIDISPLVAI 69

Query:   193 FAV-LGTLAQILTF 205
             FA+ L T   +  F
Sbjct:    70 FALKLATSGLVTLF 83

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|BA_4037 BA_4037 "ylmG protein" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 127 (49.8 bits), Expect = 2.6e-08, P = 2.6e-08
 Identities = 30/74 (40%), Positives = 44/74 (59%)

Query:   134 LDIYSGVLLVRVLLSWFPNIPWERQPLSAIRDLCDPYLNLFRNIIPPVFDTLDVSPLLA- 192
             ++IYS  L++ +LLSWFP    E      +  +C+PYL  FR  IPP+   +D+SPL+A 
Sbjct:    12 IEIYSWALIIYILLSWFPGAK-ESTFGDFLARICEPYLEPFRRFIPPL-GMIDISPLVAI 69

Query:   193 FAV-LGTLAQILTF 205
             FA+ L T   +  F
Sbjct:    70 FALKLATSGLVTLF 83

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2158906 CCB3 "AT5G36120" [Arabidopsis thaliana (taxid:3702)]

 Score = 123 (48.4 bits), Expect = 6.8e-08, P = 6.8e-08
 Identities = 31/114 (27%), Positives = 60/114 (52%)

Query:    96 TTNLVQSVGPLFFAALRERPSGSLNTPLTVVAAG-LAKWLDIYSGVLLVRVLLSWFPNIP 154
             TTNL++    +   +LR      L+     +A G L   L  +  + ++R+++SW+P +P
Sbjct:    52 TTNLIRQTNSIS-ESLRNISLADLDPGTAKLAIGILGPALSAFGFLFILRIVMSWYPKLP 110

Query:   155 WERQPLSAIRDLCDPYLNLFRNIIPPVFDTLDVSPLLAFAVLGTLAQILTFSRG 208
              ++ P        +P L   R +IPP+   +DV+P++ F ++  L++IL   +G
Sbjct:   111 VDKFPYVLAYAPTEPILVQTRKVIPPLAG-VDVTPVVWFGLVSFLSEILVGPQG 163

GO:0003674 "molecular_function" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0010190 "cytochrome b6f complex assembly" evidence=IMP

GO:0000023 "maltose metabolic process" evidence=RCA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0043085 "positive regulation of catalytic activity" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

UNIPROTKB|Q71XY4 LMOf2365_2061 "YGGT family protein" [Listeria monocytogenes serotype 4b str. F2365 (taxid:265669)]

 Score = 89 (36.4 bits), Expect = 0.00038, P = 0.00038
 Identities = 22/75 (29%), Positives = 39/75 (52%)

Query:   130 LAKWLDIYSGVLLVRVLLSWFPNIPWERQPLSAIRDLCDPYLNLFRNIIPPVFDTLDVSP 189
             + +WL     ++ +  L+SWFP    E +    +  + +P L  FR IIPP+    D+S 
Sbjct:    15 IIRWLPT---LMFIYFLMSWFPGAR-ESKIGQFLARIFEPILEPFRRIIPPI-GMFDISS 69

Query:   190 LLAFAVLGTLAQILT 204
             L+A+ +     ++LT
Sbjct:    70 LVAYFIFQYAMRVLT 84

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q0BX65 HNE_3255 "Putative uncharacterized protein" [Hyphomonas neptunium ATCC 15444 (taxid:228405)]

 Score = 87 (35.7 bits), Expect = 0.00065, P = 0.00065
 Identities = 21/89 (23%), Positives = 46/89 (51%)

Query:   122 PLTVVAAGLAKWLDIYSGVLLVRVLLSWFP--NI-----PWERQPLSAIRDLCDPYLNLF 174
             P+  +   +   L+I + +++++ +LSW    N+     P  R   S +  + +P     
Sbjct:     5 PMAAILDVILVILNIITWIIIIQAILSWLLTFNVISLSNPTVRSIWSGLERMTEPVYRPI 64

Query:   175 RNIIPPVFDTLDVSPLLAFAVLGTLAQIL 203
             RN++PP+   LD++PL+   ++  L Q++
Sbjct:    65 RNLLPPM-QGLDLTPLIVLLIIFFLRQVI 92


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.324   0.140   0.432    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      209       167   0.00075  108 3  11 22  0.48    31
                                                     30  0.46    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  10
  No. of states in DFA:  584 (62 KB)
  Total size of DFA:  142 KB (2087 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  15.11u 0.12s 15.23t   Elapsed:  00:00:01
  Total cpu time:  15.11u 0.12s 15.23t   Elapsed:  00:00:01
  Start:  Mon May 20 17:07:52 2013   End:  Mon May 20 17:07:53 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	AT4G27990	YGGT family protein; YGGT family protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- chloroplast, chloroplast envelope; EXPRESSED IN- 23 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Protein of unknown function YGGT (InterPro-IPR003425); BEST Arabidopsis thaliana protein match is- emb1990 (embryo defective 1990) (TAIR-AT3G07430.1); Has 489 Blast hits to 489 proteins in 148 species- Archae - 0; Bacteria - 276; Metazoa - 0; Fungi - 0; Plants - 65; Viruses - 0; Other Eukaryotes - 148 (source- NCBI BLink). (218 aa)
		(Arabidopsis thaliana)
Predicted Functional Partners:
	CCB4	CCB4 (COFACTOR ASSEMBLY OF COMPLEX C); COFACTOR ASSEMBLY OF COMPLEX C (CCB4); FUNCTIONS IN- mol [...] (297 aa)							•		0.923
	CCB1	CCB1 (COFACTOR ASSEMBLY OF COMPLEX C); COFACTOR ASSEMBLY OF COMPLEX C (CCB1); FUNCTIONS IN- mol [...] (267 aa)							•		0.885
	HCF208	HCF208 (HIGH CHLOROPHYLL FLUORESCENCE 208); HIGH CHLOROPHYLL FLUORESCENCE 208 (HCF208); FUNCTIO [...] (275 aa)							•		0.679

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	209
pfam02325	75	pfam02325, YGGT, YGGT family	2e-13
COG0762	96	COG0762, COG0762, Predicted integral membrane prot	2e-09

>gnl|CDD|216974 pfam02325, YGGT, YGGT family

 Score = 62.5 bits (153), Expect = 2e-13
 Identities = 28/74 (37%), Positives = 44/74 (59%), Gaps = 2/74 (2%)

Query: 130 LAKWLDIYSGVLLVRVLLSWFPNIPWERQPLSAIRDLCDPYLNLFRNIIPPVFDTLDVSP 189
           L+  L+IY  +L++RV+LSW P        +  +  L +P L  FR IIPP+   +D+SP
Sbjct: 1   LSTLLNIYIFLLIIRVILSWVPA-DPYNPIVQFLYRLTEPLLRPFRRIIPPIG-GIDLSP 58

Query: 190 LLAFAVLGTLAQIL 203
           ++AF +L  L  +L
Sbjct: 59  IVAFLLLQFLQILL 72

This family consists of a repeat found in conserved hypothetical integral membrane proteins. The function of this region and the proteins which possess it is unknown. Length = 75

>gnl|CDD|223833 COG0762, COG0762, Predicted integral membrane protein [Function unknown]

 Score = 52.2 bits (126), Expect = 2e-09
 Identities = 25/70 (35%), Positives = 36/70 (51%), Gaps = 1/70 (1%)

Query: 134 LDIYSGVLLVRVLLSWFPNIPWERQPLSAIRDLCDPYLNLFRNIIPPVFDTLDVSPLLAF 193
           + +Y  +LL+R LLSWFP           +  L +P L  FR +IPP    +D SP++A 
Sbjct: 18  IGVYIFLLLIRALLSWFPPAGETNPIGRLLAQLTEPLLRPFRRLIPP-LGGIDFSPIVAL 76

Query: 194 AVLGTLAQIL 203
            +L  L   L
Sbjct: 77  LILQFLQFFL 86

Length = 96

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	209
PF02325	75	YGGT: YGGT family; InterPro: IPR003425 This family	99.8
COG0762	96	Predicted integral membrane protein [Function unkn	99.73

>PF02325 YGGT: YGGT family; InterPro: IPR003425 This family represents Ycf19

Probab=99.80  E-value=1.5e-19  Score=131.74  Aligned_cols=74  Identities=39%  Similarity=0.636  Sum_probs=69.6

Q ss_pred             HHHHHHHHHHHHHHHHHhhcccCCCCCccHHHHHHHhhhHHHhhhhhhcCCCCCCcChHHHHHHHHHHHHHHHHHh
Q 028405          130 LAKWLDIYSGVLLVRVLLSWFPNIPWERQPLSAIRDLCDPYLNLFRNIIPPVFDTLDVSPLLAFAVLGTLAQILTF  205 (209)
Q Consensus       130 I~~ll~IY~~lLiIR~ILSW~~~~~~~np~~q~I~kLTEPiL~P~RRiIPpi~GgIDfSPLValLlL~lL~~lL~~  205 (209)
                      ++.++++|.+++++|+++||++. +++|++.++++++|||+++|+||++|+. |++|+||+++++++++++.++.+
T Consensus         1 l~~~~~~~~~~i~~r~ilsw~~~-~~~~~~~~~i~~~TeP~l~p~r~~ip~~-g~iD~S~lv~~~~l~~l~~~l~~   74 (75)
T PF02325_consen    1 LNTLLSIYIWLIILRFILSWFPA-NPYNPFVQFIYRITEPILRPFRRIIPPI-GGIDFSPLVALIVLQFLKIILVG   74 (75)
T ss_pred             CHHHHHHHHHHHHHHHHHHhcCc-cccChHHHHHHHHhhHHHHHHHHHcCCC-CCccHHHHHHHHHHHHHHHHHhc
Confidence            36789999999999999999999 5789999999999999999999999998 89999999999999999998865

It is associated with phototrophic organisms and may therefore play a role in photosynthesis, despite its wider association with bacteria outside of the cyanobacteria. ; GO: 0016020 membrane

>COG0762 Predicted integral membrane protein [Function unknown]

Probab=99.73  E-value=3e-17  Score=126.03  Aligned_cols=79  Identities=34%  Similarity=0.556  Sum_probs=73.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcccCCCCCccHHHHHHHhhhHHHhhhhhhcCCCCCCcChHHHHHHHHHHHHHHHHHhhcC
Q 028405          129 GLAKWLDIYSGVLLVRVLLSWFPNIPWERQPLSAIRDLCDPYLNLFRNIIPPVFDTLDVSPLLAFAVLGTLAQILTFSRG  208 (209)
Q Consensus       129 LI~~ll~IY~~lLiIR~ILSW~~~~~~~np~~q~I~kLTEPiL~P~RRiIPpi~GgIDfSPLValLlL~lL~~lL~~~~g  208 (209)
                      .+.+.++.|.+.++++.+++|+++.+|.+++.++++++|||+++|+||++|+. ||+|+||+++++++++++.++.+.+|
T Consensus        13 ~l~~~i~~~~~~~ii~~~lsw~~~~~~~~~i~~~l~~lteP~L~p~Rr~ip~l-ggiD~Spiv~iliL~~l~~~l~~~~~   91 (96)
T COG0762          13 VLLILIGVYIFLLLIRALLSWFPPAGETNPIGRLLAQLTEPLLRPFRRLIPPL-GGIDFSPIVALLILQFLQFFLIRLLG   91 (96)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCCcccCHHHHHHHHhhHhHHHHHHhCCCc-cCchHHHHHHHHHHHHHHHHHHHHHH
Confidence            47889999999999999999999987767999999999999999999999998 99999999999999999999887664

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00