Citrus Sinensis ID: 028465

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------21
Protein Sequence
MASADSSSNSNNDANDTETNPNPIPNPNSSKAIVAVPSASAAVCLMQFTGDAFAGAFMGSIFGYGAGLFKKKGLRGSFGEAGSHAKTFAVLSGVHSLVVCCLKRLRGKDDVINAGVAGCCTGIALSFPGEPSALLTSCISLGAFSFIMDGLNKQQPALAHSLSRQSRSGQFLVPRSLALPLPDELKDAFSSFCKSLRKPIKHGGRTAH
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHccHHHHccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccccccccccEEEEEccHHHHHHHHHHHHHcccHHHHHcccccccHHHHcHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHcHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHccccHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHccccccccccc
Coil and Loop (DISEMBL)
masadsssnsnndandtetnpnpipnpnsskaivavPSASAAVCLMQFTGDAFAGAFMGSIFGYGaglfkkkglrgsfgeagshAKTFAVLSGVHSLVVCCLKrlrgkddvinagvaGCCTgialsfpgepsaLLTSCISLGAFSFIMDGLNKQQPALahslsrqsrsgqflvprslalplpdeLKDAFSSFCKSlrkpikhggrtah
Flexible Loop (DISEMBL)
masadsssnsnndandtetnpnpipnpNSSKAIVAVPSASAAVCLMQFTGDAFAGAFMGSIFGYGAGLFKKKGLRGSFGEAGSHAKTFAVLSGVHSLVVCCLKRLRGKDDVINAGVAGCCTGIALSFPGEPSALLTSCISLGAFSFIMDGLNKQQPALAHSLSRQSRSGQFLVPRSLALPLPDELKDAFSSFCKslrkpikhggrtah
Low Complexity Region (SEG)
MasadsssnsnndandTETnpnpipnpnsskaivavpsasaavCLMQFTGDAFAGAFMGSIFGYGAGLFKKKGLRGSFGEAGSHAKTFAVLSGVHSLVVCCLKRLRGKDDVINAGVAGCCTGIALSFPGEPSALLTSCISLGAFSFIMDGLNKQQPALAHSLSRQSRSGQFLVPRSLALPLPDELKDAFSSFCKSLRKPIKHGGRTAH
Disordered region (IsUnstruct)
********************************IVAVPSASAAVCLMQFTGDAFAGAFMGSIFGYGAGLFKKKGLRGSFGEAGSHAKTFAVLSGVHSLVVCCLKRLRGKDDVINAGVAGCCTGIALSFPGEPSALLTSCISLGAFSFIMDGLN********************************************************
Disordered Region (DISOPRED)
***************************************SAAVCLMQFTGDAFAGAFMGSIFGYGAGLF************GSHAKTFAVLSGVHSLVVCCLKRLRGKDDVINAGVAGCCTGIALSFPGEPSALLTSCISLGAFSFIMDGLNK*******************************************************
Disordered Region (DISEMBL)
******************TNPNPIPNPNSSKAIVAVPSASAAVCLMQFTGDAFAGAFMGSIFGYGAGLFKKKGLRGSFGEAGSHAKTFAVLSGVHSLVVCCLKRLRGKDDVINAGVAGCCTGIALSFPGEPSALLTSCISLGAFSFIMDGLNKQQ*************GQFLVPRSLALPLPDELKDAFSSFCKSLRKP*********
Disordered Region (DISPRO)
********************************IVAVPSASAAVCLMQFTGDAFAGAFMGSIFGYGAGLFKKKGLRGSFGEAGSHAKTFAVLSGVHSLVVCCLKRLRGKDDVINAGVAGCCTGIALSFPGEPSALLTSCISLGAFSFIMDGLNKQQPALAHSLSRQS****FLVPRSLALPLPDELKDAFSSFCKSLRK**********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiihhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASADSSSNSNNDANDTETNPNPIPNPNSSKAIVAVPSASAAVCLMQFTGDAFAGAFMGSIFGYGAGLFKKKGLRGSFGEAGSHAKTFAVLSGVHSLVVCCLKRLRGKDDVINAGVAGCCTGIALSFPGEPSALLTSCISLGAFSFIMDGLNKQQPALAHSLSRQSRSGQFLVPRSLALPLPDELKDAFSSFCKSLRKPIKHGGRTAH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	208	2.2.26 [Sep-21-2011]
Q94EH2	210	Mitochondrial import inne	yes	no	0.956	0.947	0.620	7e-65
Q6NKU9	214	Mitochondrial import inne	no	no	0.913	0.887	0.638	1e-62
Q6BZY4	185	Mitochondrial import inne	yes	no	0.336	0.378	0.414	1e-07
Q75E80	201	Mitochondrial import inne	yes	no	0.379	0.393	0.361	7e-07
Q6CRJ6	196	Mitochondrial import inne	yes	no	0.379	0.403	0.349	9e-07
Q6FT37	193	Mitochondrial import inne	yes	no	0.360	0.388	0.36	2e-06
Q6BT35	182	Mitochondrial import inne	yes	no	0.379	0.434	0.361	4e-06
A2RVP7	173	Mitochondrial import inne	no	no	0.307	0.369	0.375	9e-06
A1XJK0	142	Mitochondrial import inne	no	no	0.307	0.450	0.375	3e-05
Q9C1E8	194	Mitochondrial import inne	N/A	no	0.379	0.407	0.361	9e-05

>sp|Q94EH2|TI222_ARATH Mitochondrial import inner membrane translocase subunit TIM22-2 OS=Arabidopsis thaliana GN=TIM22-2 PE=2 SV=1

 Score =  246 bits (628), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 131/211 (62%), Positives = 162/211 (76%), Gaps = 12/211 (5%)

Query: 1   MASADSSSNSNNDAN-DTETNPN----PIPNPNSSKAIVAVPSASAAVCLMQFTGDAFAG 55
           MA+ DSS+  + D N D+++N N       + +SSKA+V +P+   AVCL +F GDA  G
Sbjct: 1   MAANDSSNAIDIDGNLDSDSNLNTDGDEATDNDSSKALVTIPAP--AVCLFRFAGDAAGG 58

Query: 56  AFMGSIFGYGAGLFKKKGLRGSFGEAGSHAKTFAVLSGVHSLVVCCLKRLRGKDDVINAG 115
           A MGSIFGYG+GLFKKKG +GSF +AG  AKTFAVLSGVHSLVVC LK++RGKDD IN G
Sbjct: 59  AVMGSIFGYGSGLFKKKGFKGSFADAGQSAKTFAVLSGVHSLVVCLLKQIRGKDDAINVG 118

Query: 116 VAGCCTGIALSFPGEPSALLTSCISLGAFSFIMDGLNKQQPALAHSLSRQSRSGQF---- 171
           VAGCCTG+ALSFPG P ALL SC++ GAFSFI++GLNK+Q ALAHS+S + ++G F    
Sbjct: 119 VAGCCTGLALSFPGAPQALLQSCLTFGAFSFILEGLNKRQTALAHSVSLRHQTGLFQDHH 178

Query: 172 -LVPRSLALPLPDELKDAFSSFCKSLRKPIK 201
             +P SLALP+P+E+K AFSSFCKSL KP K
Sbjct: 179 RALPLSLALPIPEEIKGAFSSFCKSLAKPRK 209

Essential core component of the TIM22 complex, a complex that mediates the import and insertion of multi-pass transmembrane proteins into the mitochondrial inner membrane.
Arabidopsis thaliana (taxid: 3702)

>sp|Q6NKU9|TI223_ARATH Mitochondrial import inner membrane translocase subunit TIM22-3 OS=Arabidopsis thaliana GN=TIM22-3 PE=2 SV=1

 Score =  239 bits (610), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 129/202 (63%), Positives = 157/202 (77%), Gaps = 12/202 (5%)

Query: 3   SADSSSNSNNDANDTETNPNPIPNPNSSKAIVAVPSASAAVCLMQFTGDAFAGAFMGSIF 62
           S DS S  N DAND   + +      SSKA+V +P+   AVCL++F GDA +GAFMGS+F
Sbjct: 15  SLDSDSKPNRDANDMTDHDS------SSKALV-IPAP--AVCLVRFAGDAASGAFMGSVF 65

Query: 63  GYGAGLFKKKGLRGSFGEAGSHAKTFAVLSGVHSLVVCCLKRLRGKDDVINAGVAGCCTG 122
           GYG+GLFKKKG +GSF +AG  AKTFAVLSGVHSLVVC LK++RGKDD IN GVAGCCTG
Sbjct: 66  GYGSGLFKKKGFKGSFVDAGQSAKTFAVLSGVHSLVVCLLKQIRGKDDAINVGVAGCCTG 125

Query: 123 IALSFPGEPSALLTSCISLGAFSFIMDGLNKQQPALAHSLS--RQSRSGQFLVP-RSLAL 179
           +ALSFPG P A+L SC++ GAFSFI++GLNK+Q ALAHS+S  +Q+RS Q  +P  SLA+
Sbjct: 126 LALSFPGAPQAMLQSCLTFGAFSFILEGLNKRQTALAHSVSFRQQTRSPQHDLPLLSLAI 185

Query: 180 PLPDELKDAFSSFCKSLRKPIK 201
           P+ DE+K AFSSFC SL KP K
Sbjct: 186 PIHDEIKGAFSSFCNSLTKPKK 207

Essential core component of the TIM22 complex, a complex that mediates the import and insertion of multi-pass transmembrane proteins into the mitochondrial inner membrane.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6BZY4|TIM22_YARLI Mitochondrial import inner membrane translocase subunit TIM22 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=TIM22 PE=3 SV=2

 Score = 56.6 bits (135), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/70 (41%), Positives = 36/70 (51%)

Query: 80  EAGSHAKTFAVLSGVHSLVVCCLKRLRGKDDVINAGVAGCCTGIALSFPGEPSALLTSCI 139
            A S AK F  + GV S   CC++ LR K+D+ N   AGC TG  L+    P A L  C 
Sbjct: 99  RAWSSAKNFGFIGGVFSGTECCIESLRAKNDIWNGVAAGCLTGGGLAVKAGPQAALVGCA 158

Query: 140 SLGAFSFIMD 149
              AFS  +D
Sbjct: 159 GFAAFSAAID 168

Essential core component of the TIM22 complex, a complex that mediates the import and insertion of multi-pass transmembrane proteins into the mitochondrial inner membrane. In the TIM22 complex, it constitutes the voltage-activated and signal-gated channel. Forms a twin-pore translocase that uses the membrane potential as external driving force in 2 voltage-dependent steps.

Yarrowia lipolytica (strain CLIB 122 / E 150) (taxid: 284591)

>sp|Q75E80|TIM22_ASHGO Mitochondrial import inner membrane translocase subunit TIM22 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=TIM22 PE=3 SV=1

 Score = 53.9 bits (128), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 30/83 (36%), Positives = 44/83 (53%), Gaps = 4/83 (4%)

Query: 71  KKGLRGSFGEAG----SHAKTFAVLSGVHSLVVCCLKRLRGKDDVINAGVAGCCTGIALS 126
           K+ ++  F + G    S AK F  +  ++S V C ++ LR K+D+ N   AGC TG  L+
Sbjct: 102 KQQIKIQFADMGRRAYSSAKNFGYIGMIYSGVECTIESLRAKNDLYNGVAAGCLTGGGLA 161

Query: 127 FPGEPSALLTSCISLGAFSFIMD 149
           +   PSA L  C    AFS  +D
Sbjct: 162 YKSGPSAALIGCAGFAAFSTAID 184

Essential core component of the TIM22 complex, a complex that mediates the import and insertion of multi-pass transmembrane proteins into the mitochondrial inner membrane. In the TIM22 complex, it constitutes the voltage-activated and signal-gated channel. Forms a twin-pore translocase that uses the membrane potential as external driving force in 2 voltage-dependent steps.

Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) (taxid: 284811)

>sp|Q6CRJ6|TIM22_KLULA Mitochondrial import inner membrane translocase subunit TIM22 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=TIM22 PE=3 SV=1

 Score = 53.5 bits (127), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 29/83 (34%), Positives = 43/83 (51%), Gaps = 4/83 (4%)

Query: 71  KKGLRGSFGEAG----SHAKTFAVLSGVHSLVVCCLKRLRGKDDVINAGVAGCCTGIALS 126
           K+ ++  F + G    S AK F  +  ++S V C ++ LR K+D+ N   AGC TG  L+
Sbjct: 97  KQQIKIQFSDMGKRSYSSAKNFGYIGMIYSGVECVVESLRAKNDIYNGVAAGCLTGGGLA 156

Query: 127 FPGEPSALLTSCISLGAFSFIMD 149
           +   P A L  C    AFS  +D
Sbjct: 157 YKSGPQAALVGCAGFAAFSTAID 179

Essential core component of the TIM22 complex, a complex that mediates the import and insertion of multi-pass transmembrane proteins into the mitochondrial inner membrane. In the TIM22 complex, it constitutes the voltage-activated and signal-gated channel. Forms a twin-pore translocase that uses the membrane potential as external driving force in 2 voltage-dependent steps.

Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) (taxid: 284590)

>sp|Q6FT37|TIM22_CANGA Mitochondrial import inner membrane translocase subunit TIM22 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=TIM22 PE=3 SV=1

 Score = 52.4 bits (124), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 39/75 (52%)

Query: 81  AGSHAKTFAVLSGVHSLVVCCLKRLRGKDDVINAGVAGCCTGIALSFPGEPSALLTSCIS 140
           A S AK F  +  +++ V C ++ LR K+D+ N   AGC TG  L++   P A L  C  
Sbjct: 108 AYSSAKNFGYIGMIYAGVECAVESLRAKNDIYNGITAGCITGGGLAYKSGPQAALVGCAG 167

Query: 141 LGAFSFIMDGLNKQQ 155
             AFS  +D   K +
Sbjct: 168 FAAFSAAIDMYMKSE 182

Essential core component of the TIM22 complex, a complex that mediates the import and insertion of multi-pass transmembrane proteins into the mitochondrial inner membrane. In the TIM22 complex, it constitutes the voltage-activated and signal-gated channel. Forms a twin-pore translocase that uses the membrane potential as external driving force in 2 voltage-dependent steps.

Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) (taxid: 284593)

>sp|Q6BT35|TIM22_DEBHA Mitochondrial import inner membrane translocase subunit TIM22 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=TIM22 PE=3 SV=1

 Score = 51.6 bits (122), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 30/83 (36%), Positives = 41/83 (49%), Gaps = 4/83 (4%)

Query: 71  KKGLRGSFGEAG----SHAKTFAVLSGVHSLVVCCLKRLRGKDDVINAGVAGCCTGIALS 126
           K+ ++  F + G    S AK F  +  V+S V C ++ LR K D+ N   AGC TG  L+
Sbjct: 83  KQQMKLQFSDMGKRTYSSAKNFGYIGMVYSGVECAIESLRAKHDIYNGVSAGCITGGGLA 142

Query: 127 FPGEPSALLTSCISLGAFSFIMD 149
               P A L  C    AFS  +D
Sbjct: 143 IRAGPQAALVGCAGFAAFSTAID 165

Essential core component of the TIM22 complex, a complex that mediates the import and insertion of multi-pass transmembrane proteins into the mitochondrial inner membrane. In the TIM22 complex, it constitutes the voltage-activated and signal-gated channel. Forms a twin-pore translocase that uses the membrane potential as external driving force in 2 voltage-dependent steps.

Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) (taxid: 284592)

>sp|A2RVP7|TI221_ARATH Mitochondrial import inner membrane translocase subunit TIM22-1 OS=Arabidopsis thaliana GN=TIM22-1 PE=2 SV=1

 Score = 50.4 bits (119), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 35/64 (54%)

Query: 86  KTFAVLSGVHSLVVCCLKRLRGKDDVINAGVAGCCTGIALSFPGEPSALLTSCISLGAFS 145
           KTFAV+  V S   C +++ R K D +N  +AGC TG ++S  G P A    C     FS
Sbjct: 103 KTFAVMGLVFSAAECIVEKARAKHDTVNTAIAGCVTGGSMSARGGPKAACIGCAGFATFS 162

Query: 146 FIMD 149
            +++
Sbjct: 163 VLIE 166

Essential core component of the TIM22 complex, a complex that mediates the import and insertion of multi-pass transmembrane proteins into the mitochondrial inner membrane.

Arabidopsis thaliana (taxid: 3702)

>sp|A1XJK0|TI224_ARATH Mitochondrial import inner membrane translocase subunit TIM22-4 OS=Arabidopsis thaliana GN=TIM22-4 PE=2 SV=3

 Score = 48.9 bits (115), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 35/64 (54%)

Query: 86  KTFAVLSGVHSLVVCCLKRLRGKDDVINAGVAGCCTGIALSFPGEPSALLTSCISLGAFS 145
           KTFAV+  V S   C +++ R K D +N  +AGC TG ++S  G P A    C     FS
Sbjct: 72  KTFAVMGLVFSAAECIVEKARAKHDTVNTAIAGCVTGGSMSARGGPKAACIGCAGFAIFS 131

Query: 146 FIMD 149
            +++
Sbjct: 132 VLIE 135

Essential core component of the TIM22 complex, a complex that mediates the import and insertion of multi-pass transmembrane proteins into the mitochondrial inner membrane.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C1E8|TIM22_NEUCR Mitochondrial import inner membrane translocase subunit tim-22 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=tim-22 PE=3 SV=2

 Score = 47.0 bits (110), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 30/83 (36%), Positives = 42/83 (50%), Gaps = 4/83 (4%)

Query: 71  KKGLRGSFGEAG----SHAKTFAVLSGVHSLVVCCLKRLRGKDDVINAGVAGCCTGIALS 126
           K+ L+  F + G    S AK FA +  + S + C ++ LR K+D+ N   AGC TG  L+
Sbjct: 102 KEQLKHGFKDMGQRSYSTAKNFAKVGALFSGIECGIEGLRAKNDLGNGVAAGCLTGAILA 161

Query: 127 FPGEPSALLTSCISLGAFSFIMD 149
             G P A    C    AFS  +D
Sbjct: 162 KNGGPQAAAVGCAGFAAFSAAID 184

Essential core component of the TIM22 complex, a complex that mediates the import and insertion of multi-pass transmembrane proteins into the mitochondrial inner membrane. In the TIM22 complex, it constitutes the voltage-activated and signal-gated channel. Forms a twin-pore translocase that uses the membrane potential as external driving force in 2 voltage-dependent steps.

Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	208
224114451	217	predicted protein [Populus trichocarpa]	0.956	0.917	0.673	9e-66
225460789	205	PREDICTED: uncharacterized protein LOC10	0.980	0.995	0.645	1e-65
18416798	210	Tim17/Tim22/Tim23 pre-protein translocas	0.956	0.947	0.620	4e-63
297803428	210	mitochondrial import inner membrane tran	0.903	0.895	0.618	1e-61
297796429	213	protein translocase [Arabidopsis lyrata	0.908	0.887	0.643	2e-61
79537394	214	mitochondrial import inner membrane tran	0.913	0.887	0.638	5e-61
388520225	200	unknown [Lotus japonicus]	0.889	0.925	0.630	5e-61
4455190	208	putative protein [Arabidopsis thaliana]	0.947	0.947	0.616	6e-61
356501600	237	PREDICTED: mitochondrial import inner me	0.908	0.797	0.631	3e-59
224056423	171	predicted protein [Populus trichocarpa]	0.759	0.923	0.740	5e-59

>gi|224114451|ref|XP_002316764.1| predicted protein [Populus trichocarpa] gi|222859829|gb|EEE97376.1| predicted protein [Populus trichocarpa]

 Score =  255 bits (651), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 140/208 (67%), Positives = 159/208 (76%), Gaps = 9/208 (4%)

Query: 1   MASADSSSNSNN-----DANDTETNPNPIPNPNSSKAIVAVPSASAAVCLMQFTGDAFAG 55
           MA+A+S   SNN     D  DT  NPN   N N+   I +  S+S +VCL++F GD+ AG
Sbjct: 1   MATANSPDASNNNNTDSDVEDTSPNPNLSINKNNGFLISSAESSSPSVCLLRFAGDSAAG 60

Query: 56  AFMGSIFGYGAGLFKKKGLRGSFGEAGSHAKTFAVLSGVHSLVVCCLKRLRGKDDVINAG 115
           AFMGSIFGYG+GL K+KG +GSFGEAGS AKTFAVLSGVHSLVVC LKRLRGKDDVINAG
Sbjct: 61  AFMGSIFGYGSGLIKRKGFKGSFGEAGSCAKTFAVLSGVHSLVVCFLKRLRGKDDVINAG 120

Query: 116 VAGCCTGIALSFPGEPSALLTSCISLGAFSFIMDGLNKQQPALAHSL-SRQSRSGQFL-- 172
           VAGCCTG+ALSFPG P ALL SC++ GAFSFI++GLNKQQPALAHS  SR  R    +  
Sbjct: 121 VAGCCTGLALSFPGAPQALLQSCLTFGAFSFIIEGLNKQQPALAHSFSSRNKRDYHNVTC 180

Query: 173 -VPRSLALPLPDELKDAFSSFCKSLRKP 199
            V   LA+PLPDELK AFS FCKSLRKP
Sbjct: 181 PVALHLAVPLPDELKRAFSFFCKSLRKP 208

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225460789|ref|XP_002274964.1| PREDICTED: uncharacterized protein LOC100248615 [Vitis vinifera]

 Score =  254 bits (650), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 135/209 (64%), Positives = 156/209 (74%), Gaps = 5/209 (2%)

Query: 1   MASADSSSNSNNDANDTETNPNPIPNPNSSKAIVAVPSASAAVCLMQFTGDAFAGAFMGS 60
           MA+ADS    N D++    NPN     NSS A+ A  S    VCL++F GD+ AGAFMGS
Sbjct: 1   MATADSP---NTDSDADFENPNSTVTSNSSDALKANLSGPPIVCLLRFAGDSVAGAFMGS 57

Query: 61  IFGYGAGLFKKKGLRGSFGEAGSHAKTFAVLSGVHSLVVCCLKRLRGKDDVINAGVAGCC 120
           IFGYG GL KKKG +GSF EAGS AKTFA+LSGVHSLVVC LKRLRGKDDV+NAGVAGCC
Sbjct: 58  IFGYGLGLVKKKGFKGSFAEAGSSAKTFAILSGVHSLVVCFLKRLRGKDDVVNAGVAGCC 117

Query: 121 TGIALSFPGEPSALLTSCISLGAFSFIMDGLNKQQPALAHSLS-RQSRSGQFLVPRSLAL 179
           TG+ALSFPG P ALL SC++ G FSFI++GLNKQQPALAH  S R  R G+  +P  LA 
Sbjct: 118 TGLALSFPGTPQALLQSCVTFGVFSFIIEGLNKQQPALAHPFSMRNERGGKKALP-PLAF 176

Query: 180 PLPDELKDAFSSFCKSLRKPIKHGGRTAH 208
           PLPDELK++FS FC+SL+KP K     AH
Sbjct: 177 PLPDELKESFSHFCRSLQKPNKGNFPAAH 205

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18416798|ref|NP_567754.1| Tim17/Tim22/Tim23 pre-protein translocase of the mitochondrial outer membrane domain-containing protein [Arabidopsis thaliana] gi|75165412|sp|Q94EH2.1|TI222_ARATH RecName: Full=Mitochondrial import inner membrane translocase subunit TIM22-2 gi|15294264|gb|AAK95309.1|AF410323_1 AT4g26670/F10M23_10 [Arabidopsis thaliana] gi|20857097|gb|AAM26699.1| AT4g26670/F10M23_10 [Arabidopsis thaliana] gi|21593873|gb|AAM65840.1| unknown [Arabidopsis thaliana] gi|89213239|gb|ABD64059.1| At4g26670 [Arabidopsis thaliana] gi|332659835|gb|AEE85235.1| Tim17/Tim22/Tim23 pre-protein translocase of the mitochondrial outer membrane domain-containing protein [Arabidopsis thaliana]

 Score =  246 bits (628), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 131/211 (62%), Positives = 162/211 (76%), Gaps = 12/211 (5%)

Query: 1   MASADSSSNSNNDAN-DTETNPN----PIPNPNSSKAIVAVPSASAAVCLMQFTGDAFAG 55
           MA+ DSS+  + D N D+++N N       + +SSKA+V +P+   AVCL +F GDA  G
Sbjct: 1   MAANDSSNAIDIDGNLDSDSNLNTDGDEATDNDSSKALVTIPAP--AVCLFRFAGDAAGG 58

Query: 56  AFMGSIFGYGAGLFKKKGLRGSFGEAGSHAKTFAVLSGVHSLVVCCLKRLRGKDDVINAG 115
           A MGSIFGYG+GLFKKKG +GSF +AG  AKTFAVLSGVHSLVVC LK++RGKDD IN G
Sbjct: 59  AVMGSIFGYGSGLFKKKGFKGSFADAGQSAKTFAVLSGVHSLVVCLLKQIRGKDDAINVG 118

Query: 116 VAGCCTGIALSFPGEPSALLTSCISLGAFSFIMDGLNKQQPALAHSLSRQSRSGQF---- 171
           VAGCCTG+ALSFPG P ALL SC++ GAFSFI++GLNK+Q ALAHS+S + ++G F    
Sbjct: 119 VAGCCTGLALSFPGAPQALLQSCLTFGAFSFILEGLNKRQTALAHSVSLRHQTGLFQDHH 178

Query: 172 -LVPRSLALPLPDELKDAFSSFCKSLRKPIK 201
             +P SLALP+P+E+K AFSSFCKSL KP K
Sbjct: 179 RALPLSLALPIPEEIKGAFSSFCKSLAKPRK 209

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297803428|ref|XP_002869598.1| mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein [Arabidopsis lyrata subsp. lyrata] gi|297315434|gb|EFH45857.1| mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  241 bits (616), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 125/202 (61%), Positives = 153/202 (75%), Gaps = 14/202 (6%)

Query: 5   DSSSNSNNDANDTETNPNPIPNPNSSKAIVAVPSASAAVCLMQFTGDAFAGAFMGSIFGY 64
           +S SN N D ++   N       +SSKA+  +P+   AVCL +F GDA  GA MGSIFGY
Sbjct: 17  ESDSNLNTDGDEATDN-------DSSKALATIPAP--AVCLFRFAGDAAGGAVMGSIFGY 67

Query: 65  GAGLFKKKGLRGSFGEAGSHAKTFAVLSGVHSLVVCCLKRLRGKDDVINAGVAGCCTGIA 124
           G+GLFKKKG +GSF +AG  AKTFAVLSGVHSLVVC LK++RGKDD IN GVAGCCTG+A
Sbjct: 68  GSGLFKKKGFKGSFADAGQSAKTFAVLSGVHSLVVCLLKQIRGKDDAINVGVAGCCTGLA 127

Query: 125 LSFPGEPSALLTSCISLGAFSFIMDGLNKQQPALAHSLSRQSRSGQFL-----VPRSLAL 179
           LSFPG P ALL SC++ GAFSFI++GLNK+Q ALAHS+S + ++G F      +P SLAL
Sbjct: 128 LSFPGAPQALLQSCLTFGAFSFILEGLNKRQTALAHSVSLRHQTGLFQDHHRPLPLSLAL 187

Query: 180 PLPDELKDAFSSFCKSLRKPIK 201
           P+P+E+K AFSSFCKS+ KP K
Sbjct: 188 PIPEEIKGAFSSFCKSIAKPRK 209

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297796429|ref|XP_002866099.1| protein translocase [Arabidopsis lyrata subsp. lyrata] gi|297311934|gb|EFH42358.1| protein translocase [Arabidopsis lyrata subsp. lyrata]

 Score =  240 bits (613), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 130/202 (64%), Positives = 158/202 (78%), Gaps = 13/202 (6%)

Query: 3   SADSSSNSNNDANDTETNPNPIPNPNSSKAIVAVPSASAAVCLMQFTGDAFAGAFMGSIF 62
           S +S S  N++AND       + N +SSKA+V +PS   AVCL++F GDA +GAFMGSIF
Sbjct: 15  SLNSDSKPNHEAND-------VTNHDSSKALV-IPSP--AVCLVRFAGDAASGAFMGSIF 64

Query: 63  GYGAGLFKKKGLRGSFGEAGSHAKTFAVLSGVHSLVVCCLKRLRGKDDVINAGVAGCCTG 122
           GYG+GLFKKKG +GSF +AG  AKTFAVLSGVHSLVVC LK++RGKDD IN GVAGCCTG
Sbjct: 65  GYGSGLFKKKGFKGSFVDAGQSAKTFAVLSGVHSLVVCLLKQIRGKDDAINVGVAGCCTG 124

Query: 123 IALSFPGEPSALLTSCISLGAFSFIMDGLNKQQPALAHSLS--RQSRSGQFLVP-RSLAL 179
           +ALSFPG P A+L SC++ GAFSFI++GLNK+Q ALAHS+S   Q+RS Q  +P  SLAL
Sbjct: 125 LALSFPGAPQAMLQSCLTFGAFSFILEGLNKRQTALAHSVSLRHQTRSIQHDLPLLSLAL 184

Query: 180 PLPDELKDAFSSFCKSLRKPIK 201
           P+ DE+K AF+SFC SL KP K
Sbjct: 185 PVHDEIKGAFTSFCNSLTKPKK 206

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|79537394|ref|NP_200362.3| mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein [Arabidopsis thaliana] gi|75126931|sp|Q6NKU9.1|TI223_ARATH RecName: Full=Mitochondrial import inner membrane translocase subunit TIM22-3 gi|46931218|gb|AAT06413.1| At5g55510 [Arabidopsis thaliana] gi|50897226|gb|AAT85752.1| At5g55510 [Arabidopsis thaliana] gi|89213241|gb|ABD64060.1| At5g55510 [Arabidopsis thaliana] gi|110743159|dbj|BAE99471.1| hypothetical protein [Arabidopsis thaliana] gi|332009255|gb|AED96638.1| mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein [Arabidopsis thaliana]

 Score =  239 bits (610), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 129/202 (63%), Positives = 157/202 (77%), Gaps = 12/202 (5%)

Query: 3   SADSSSNSNNDANDTETNPNPIPNPNSSKAIVAVPSASAAVCLMQFTGDAFAGAFMGSIF 62
           S DS S  N DAND   + +      SSKA+V +P+   AVCL++F GDA +GAFMGS+F
Sbjct: 15  SLDSDSKPNRDANDMTDHDS------SSKALV-IPAP--AVCLVRFAGDAASGAFMGSVF 65

Query: 63  GYGAGLFKKKGLRGSFGEAGSHAKTFAVLSGVHSLVVCCLKRLRGKDDVINAGVAGCCTG 122
           GYG+GLFKKKG +GSF +AG  AKTFAVLSGVHSLVVC LK++RGKDD IN GVAGCCTG
Sbjct: 66  GYGSGLFKKKGFKGSFVDAGQSAKTFAVLSGVHSLVVCLLKQIRGKDDAINVGVAGCCTG 125

Query: 123 IALSFPGEPSALLTSCISLGAFSFIMDGLNKQQPALAHSLS--RQSRSGQFLVP-RSLAL 179
           +ALSFPG P A+L SC++ GAFSFI++GLNK+Q ALAHS+S  +Q+RS Q  +P  SLA+
Sbjct: 126 LALSFPGAPQAMLQSCLTFGAFSFILEGLNKRQTALAHSVSFRQQTRSPQHDLPLLSLAI 185

Query: 180 PLPDELKDAFSSFCKSLRKPIK 201
           P+ DE+K AFSSFC SL KP K
Sbjct: 186 PIHDEIKGAFSSFCNSLTKPKK 207

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388520225|gb|AFK48174.1| unknown [Lotus japonicus]

 Score =  239 bits (610), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 128/203 (63%), Positives = 152/203 (74%), Gaps = 18/203 (8%)

Query: 1   MASADSSSNSNNDANDTETNPNPIPNPNSSKAIVAVPSASAAVCLMQFTGDAFAGAFMGS 60
           MA+ADS        + T+  P    NP ++  + A P    AVCL++F  D+  GAFMGS
Sbjct: 1   MATADSD-------DITQPPPQVSSNPPTNALVPATP----AVCLVRFATDSAGGAFMGS 49

Query: 61  IFGYGAGLFKKKGLRGSFGEAGSHAKTFAVLSGVHSLVVCCLKRLRGKDDVINAGVAGCC 120
           +FGYGAGLFKKKG +GSF EAGS+AKTFAVLSGVHSLVVC LKRLRGKDDVINAGVAGCC
Sbjct: 50  VFGYGAGLFKKKGFKGSFVEAGSYAKTFAVLSGVHSLVVCILKRLRGKDDVINAGVAGCC 109

Query: 121 TGIALSFPGEPSALLTSCISLGAFSFIMDGLNKQQPALAHSLSRQSRSGQ-----FLVPR 175
           TG+ALSFPG P ALL SC + GAFSF+M+GLNKQQPALA  +S ++ +       F +P 
Sbjct: 110 TGLALSFPGAPQALLQSCFTFGAFSFVMEGLNKQQPALALPMSWKTTALHNARPPFALP- 168

Query: 176 SLALPLPDELKDAFSSFCKSLRK 198
            L LPLPDE+K+AFSSFCKSL+K
Sbjct: 169 -LQLPLPDEMKEAFSSFCKSLKK 190

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|4455190|emb|CAB36513.1| putative protein [Arabidopsis thaliana] gi|7269519|emb|CAB79522.1| putative protein [Arabidopsis thaliana]

 Score =  239 bits (609), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 130/211 (61%), Positives = 160/211 (75%), Gaps = 14/211 (6%)

Query: 1   MASADSSSNSNNDAN-DTETNPN----PIPNPNSSKAIVAVPSASAAVCLMQFTGDAFAG 55
           MA+ DSS+  + D N D+++N N       + +SSKA+V +P+   AVCL +F GDA  G
Sbjct: 1   MAANDSSNAIDIDGNLDSDSNLNTDGDEATDNDSSKALVTIPAP--AVCLFRFAGDAAGG 58

Query: 56  AFMGSIFGYGAGLFKKKGLRGSFGEAGSHAKTFAVLSGVHSLVVCCLKRLRGKDDVINAG 115
           A MGSIFGY  GLFKKKG +GSF +AG  AKTFAVLSGVHSLVVC LK++RGKDD IN G
Sbjct: 59  AVMGSIFGY--GLFKKKGFKGSFADAGQSAKTFAVLSGVHSLVVCLLKQIRGKDDAINVG 116

Query: 116 VAGCCTGIALSFPGEPSALLTSCISLGAFSFIMDGLNKQQPALAHSLSRQSRSGQF---- 171
           VAGCCTG+ALSFPG P ALL SC++ GAFSFI++GLNK+Q ALAHS+S + ++G F    
Sbjct: 117 VAGCCTGLALSFPGAPQALLQSCLTFGAFSFILEGLNKRQTALAHSVSLRHQTGLFQDHH 176

Query: 172 -LVPRSLALPLPDELKDAFSSFCKSLRKPIK 201
             +P SLALP+P+E+K AFSSFCKSL KP K
Sbjct: 177 RALPLSLALPIPEEIKGAFSSFCKSLAKPRK 207

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356501600|ref|XP_003519612.1| PREDICTED: mitochondrial import inner membrane translocase subunit Tim22-like [Glycine max]

 Score =  233 bits (595), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 127/201 (63%), Positives = 146/201 (72%), Gaps = 12/201 (5%)

Query: 1   MASADSSSNSNNDANDTETNPNPIPNPNSSKAIVAVPSASAAVCLMQFTGDAFAGAFMGS 60
           MA+ DS + +    +DT         PNSS     VP+A  AVCL++F  D+  GA MGS
Sbjct: 37  MATPDSDATTQPQDSDTA--------PNSSPPNALVPAA-PAVCLLRFATDSAGGALMGS 87

Query: 61  IFGYGAGLFKKKGLRGSFGEAGSHAKTFAVLSGVHSLVVCCLKRLRGKDDVINAGVAGCC 120
           +FGYGAGLFKKKG +GSF EAGS+AKTFAVLSGVHSLVVC LKRLRGKDDVINAGVAGCC
Sbjct: 88  VFGYGAGLFKKKGFKGSFVEAGSYAKTFAVLSGVHSLVVCILKRLRGKDDVINAGVAGCC 147

Query: 121 TGIALSFPGEPSALLTSCISLGAFSFIMDGLNKQQPALAHSLSRQSRSGQFLVP---RSL 177
           TG+ALSFPG P ALL SC++ GAFSFIM+GLNKQQPALA  +S +        P     L
Sbjct: 148 TGLALSFPGAPQALLQSCLTFGAFSFIMEGLNKQQPALAVPMSWKKTVQHNACPPLVLPL 207

Query: 178 ALPLPDELKDAFSSFCKSLRK 198
            L LPDELKDAFS F +SL+K
Sbjct: 208 QLSLPDELKDAFSFFSESLKK 228

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224056423|ref|XP_002298849.1| predicted protein [Populus trichocarpa] gi|222846107|gb|EEE83654.1| predicted protein [Populus trichocarpa]

 Score =  233 bits (593), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 120/162 (74%), Positives = 136/162 (83%), Gaps = 4/162 (2%)

Query: 42  AVCLMQFTGDAFAGAFMGSIFGYGAGLFKKKGLRGSFGEAGSHAKTFAVLSGVHSLVVCC 101
           +VCL++F GD+ AGAFMGSIFGYG+GL KKKG +GSFGEAGS AKTFAVLSGVHSLVVC 
Sbjct: 2   SVCLIRFAGDSAAGAFMGSIFGYGSGLIKKKGFKGSFGEAGSCAKTFAVLSGVHSLVVCF 61

Query: 102 LKRLRGKDDVINAGVAGCCTGIALSFPGEPSALLTSCISLGAFSFIMDGLNKQQPALAHS 161
           LKRLRGKDDVINAGVAGCCTG+ALSFPG P ALL SC++ GAFSFI++GLNK+Q ALAHS
Sbjct: 62  LKRLRGKDDVINAGVAGCCTGLALSFPGAPQALLQSCLTFGAFSFIIEGLNKKQAALAHS 121

Query: 162 LSRQSRSGQFLVPRSLAL----PLPDELKDAFSSFCKSLRKP 199
           +S +++      P  LAL    PLPDELK AFS FCKSLRKP
Sbjct: 122 ISSRNKCDYHSKPCPLALPLSVPLPDELKGAFSFFCKSLRKP 163

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	208
TAIR|locus:2116367	210	AT4G26670 [Arabidopsis thalian	0.759	0.752	0.693	3.6e-57
TAIR|locus:2173907	214	AT5G55510 [Arabidopsis thalian	0.759	0.738	0.695	2e-56
ASPGD|ASPL0000014322	181	AN8059 [Emericella nidulans (t	0.379	0.436	0.341	2e-08
CGD|CAL0003855	184	TIM22 [Candida albicans (taxid	0.322	0.364	0.402	2e-08
UNIPROTKB|Q59KG4	184	TIM22 "Putative uncharacterize	0.322	0.364	0.402	2e-08
TAIR|locus:2100088	173	MEE67 "AT3G10110" [Arabidopsis	0.307	0.369	0.375	3.3e-08
UNIPROTKB|F1NM85	166	TIMM17A "Uncharacterized prote	0.653	0.819	0.289	4.2e-06
UNIPROTKB|F1NVE2	194	TIMM22 "Uncharacterized protei	0.341	0.365	0.361	4.5e-06
UNIPROTKB|J9NS76	193	TIMM22 "Uncharacterized protei	0.341	0.367	0.361	6.9e-06
UNIPROTKB|Q5BIN4	194	TIMM22 "Mitochondrial import i	0.341	0.365	0.361	7.1e-06

TAIR|locus:2116367 AT4G26670 [Arabidopsis thaliana (taxid:3702)]

 Score = 588 (212.0 bits), Expect = 3.6e-57, P = 3.6e-57
 Identities = 113/163 (69%), Positives = 133/163 (81%)

Query:    44 CLMQFTGDAFAGAFMGSIFGYGAGLFKKKGLRGSFGEAGSHAKTFAVLSGVHSLVVCCLK 103
             CL +F GDA  GA MGSIFGYG+GLFKKKG +GSF +AG  AKTFAVLSGVHSLVVC LK
Sbjct:    47 CLFRFAGDAAGGAVMGSIFGYGSGLFKKKGFKGSFADAGQSAKTFAVLSGVHSLVVCLLK 106

Query:   104 RLRGKDDVINAGVAGCCTGIALSFPGEPSALLTSCISLGAFSFIMDGLNKQQPALAHSLS 163
             ++RGKDD IN GVAGCCTG+ALSFPG P ALL SC++ GAFSFI++GLNK+Q ALAHS+S
Sbjct:   107 QIRGKDDAINVGVAGCCTGLALSFPGAPQALLQSCLTFGAFSFILEGLNKRQTALAHSVS 166

Query:   164 RQSRSGQF-----LVPRSLALPLPDELKDAFSSFCKSLRKPIK 201
              + ++G F      +P SLALP+P+E+K AFSSFCKSL KP K
Sbjct:   167 LRHQTGLFQDHHRALPLSLALPIPEEIKGAFSSFCKSLAKPRK 209

GO:0005739 "mitochondrion" evidence=ISM

GO:0005744 "mitochondrial inner membrane presequence translocase complex" evidence=ISS

GO:0015031 "protein transport" evidence=ISS

GO:0015450 "P-P-bond-hydrolysis-driven protein transmembrane transporter activity" evidence=ISS

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0007623 "circadian rhythm" evidence=RCA

TAIR|locus:2173907 AT5G55510 [Arabidopsis thaliana (taxid:3702)]

 Score = 581 (209.6 bits), Expect = 2.0e-56, P = 2.0e-56
 Identities = 112/161 (69%), Positives = 135/161 (83%)

Query:    44 CLMQFTGDAFAGAFMGSIFGYGAGLFKKKGLRGSFGEAGSHAKTFAVLSGVHSLVVCCLK 103
             CL++F GDA +GAFMGS+FGYG+GLFKKKG +GSF +AG  AKTFAVLSGVHSLVVC LK
Sbjct:    47 CLVRFAGDAASGAFMGSVFGYGSGLFKKKGFKGSFVDAGQSAKTFAVLSGVHSLVVCLLK 106

Query:   104 RLRGKDDVINAGVAGCCTGIALSFPGEPSALLTSCISLGAFSFIMDGLNKQQPALAHSLS 163
             ++RGKDD IN GVAGCCTG+ALSFPG P A+L SC++ GAFSFI++GLNK+Q ALAHS+S
Sbjct:   107 QIRGKDDAINVGVAGCCTGLALSFPGAPQAMLQSCLTFGAFSFILEGLNKRQTALAHSVS 166

Query:   164 --RQSRSGQFLVPR-SLALPLPDELKDAFSSFCKSLRKPIK 201
               +Q+RS Q  +P  SLA+P+ DE+K AFSSFC SL KP K
Sbjct:   167 FRQQTRSPQHDLPLLSLAIPIHDEIKGAFSSFCNSLTKPKK 207

GO:0005739 "mitochondrion" evidence=ISM

GO:0005744 "mitochondrial inner membrane presequence translocase complex" evidence=ISS

GO:0015031 "protein transport" evidence=ISS

GO:0015450 "P-P-bond-hydrolysis-driven protein transmembrane transporter activity" evidence=ISS

GO:0009941 "chloroplast envelope" evidence=IDA

ASPGD|ASPL0000014322 AN8059 [Emericella nidulans (taxid:162425)]

 Score = 128 (50.1 bits), Expect = 2.0e-08, P = 2.0e-08
 Identities = 27/79 (34%), Positives = 39/79 (49%)

Query:    71 KKGLRGSFGEAGSHAKTFAVLSGVHSLVVCCLKRLRGKDDVINAGVAGCCTGIALSFPGE 130
             K G +     + S AK F ++  ++S   CC++ LR K+D+ N+  AGC TG  L     
Sbjct:    94 KHGFKDMGSRSWSSAKNFGIVGALYSGTECCIEGLRAKNDLTNSVSAGCITGGILGAKAG 153

Query:   131 PSALLTSCISLGAFSFIMD 149
             P A    C    AFS  +D
Sbjct:   154 PQAAALGCAGFAAFSAAID 172

GO:0042721 "mitochondrial inner membrane protein insertion complex" evidence=IEA

GO:0030943 "mitochondrion targeting sequence binding" evidence=IEA

GO:0015266 "protein channel activity" evidence=IEA

GO:0045039 "protein import into mitochondrial inner membrane" evidence=IEA

CGD|CAL0003855 TIM22 [Candida albicans (taxid:5476)]

 Score = 128 (50.1 bits), Expect = 2.0e-08, P = 2.0e-08
 Identities = 27/67 (40%), Positives = 34/67 (50%)

Query:    83 SHAKTFAVLSGVHSLVVCCLKRLRGKDDVINAGVAGCCTGIALSFPGEPSALLTSCISLG 142
             S AK F  +  V+S V C ++ LR K D+ N   AGC TG  L+    P A L  C    
Sbjct:   101 SSAKNFGYIGMVYSGVECTIESLRAKHDIYNGVSAGCITGAGLAIKAGPQAALVGCAGFA 160

Query:   143 AFSFIMD 149
             AFS  +D
Sbjct:   161 AFSLAID 167

GO:0005886 "plasma membrane" evidence=IDA

GO:0042721 "mitochondrial inner membrane protein insertion complex" evidence=IEA

GO:0030943 "mitochondrion targeting sequence binding" evidence=IEA

GO:0015266 "protein channel activity" evidence=IEA

GO:0045039 "protein import into mitochondrial inner membrane" evidence=IEA

UNIPROTKB|Q59KG4 TIM22 "Putative uncharacterized protein TIM22" [Candida albicans SC5314 (taxid:237561)]

 Score = 128 (50.1 bits), Expect = 2.0e-08, P = 2.0e-08
 Identities = 27/67 (40%), Positives = 34/67 (50%)

Query:    83 SHAKTFAVLSGVHSLVVCCLKRLRGKDDVINAGVAGCCTGIALSFPGEPSALLTSCISLG 142
             S AK F  +  V+S V C ++ LR K D+ N   AGC TG  L+    P A L  C    
Sbjct:   101 SSAKNFGYIGMVYSGVECTIESLRAKHDIYNGVSAGCITGAGLAIKAGPQAALVGCAGFA 160

Query:   143 AFSFIMD 149
             AFS  +D
Sbjct:   161 AFSLAID 167

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2100088 MEE67 "AT3G10110" [Arabidopsis thaliana (taxid:3702)]

 Score = 126 (49.4 bits), Expect = 3.3e-08, P = 3.3e-08
 Identities = 24/64 (37%), Positives = 35/64 (54%)

Query:    86 KTFAVLSGVHSLVVCCLKRLRGKDDVINAGVAGCCTGIALSFPGEPSALLTSCISLGAFS 145
             KTFAV+  V S   C +++ R K D +N  +AGC TG ++S  G P A    C     FS
Sbjct:   103 KTFAVMGLVFSAAECIVEKARAKHDTVNTAIAGCVTGGSMSARGGPKAACIGCAGFATFS 162

Query:   146 FIMD 149
              +++
Sbjct:   163 VLIE 166

GO:0005744 "mitochondrial inner membrane presequence translocase complex" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0015031 "protein transport" evidence=ISS

GO:0015450 "P-P-bond-hydrolysis-driven protein transmembrane transporter activity" evidence=ISS

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP

UNIPROTKB|F1NM85 TIMM17A "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 113 (44.8 bits), Expect = 4.2e-06, P = 4.2e-06
 Identities = 42/145 (28%), Positives = 64/145 (44%)

Query:    44 CLMQFTGDAFAGAFMGSIFGY-GAGLFKKKGLRGSFGEAGSHAK----TFAVLSGVHSLV 98
             C   FT  A  G    +I G+  + +     LRGS     + A     +FAV  G+ S++
Sbjct:    17 CGGAFTMGAIGGGIFQAIKGFRNSPVGVNHRLRGSLAAVKTRAPQLGGSFAVWGGLFSMI 76

Query:    99 VCCLKRLRGKDDVINAGVAGCCTGIALSFPGEPSALLTSCISLGAFSFIMDGLNKQQPAL 158
              C + R+RGK+D  N+  +G  TG  L+    P A++ S    G    +++G       L
Sbjct:    77 DCSMVRMRGKEDPWNSITSGALTGAILAARNGPVAMVGSAAMGGILLALIEGAGI---LL 133

Query:   159 AHSLSRQSRSG-QFLVPRSLALPLP 182
                 S Q ++G QF    S   P P
Sbjct:   134 TRFASAQFQNGPQFSDDPSQLQPSP 158

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0015450 "P-P-bond-hydrolysis-driven protein transmembrane transporter activity" evidence=IEA

GO:0005744 "mitochondrial inner membrane presequence translocase complex" evidence=IEA

GO:0031305 "integral to mitochondrial inner membrane" evidence=IEA

UNIPROTKB|F1NVE2 TIMM22 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 116 (45.9 bits), Expect = 4.5e-06, P = 4.5e-06
 Identities = 26/72 (36%), Positives = 39/72 (54%)

Query:    79 GEAG-SHAKTFAVLSGVHSLVVCCLKRLRGKDDVINAGVAGCCTGIALSFPGEPSALLTS 137
             G+ G S+AK FA++  + S   C ++  RGK D  N+ ++GC TG A+ F     A +  
Sbjct:   119 GQRGISYAKNFAIVGAMFSCTECVVESYRGKSDWRNSVISGCITGGAIGFRAGMKAGVIG 178

Query:   138 CISLGAFSFIMD 149
             C    AFS  +D
Sbjct:   179 CGGFAAFSAAID 190

GO:0016021 "integral to membrane" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|J9NS76 TIMM22 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 115 (45.5 bits), Expect = 6.9e-06, P = 6.9e-06
 Identities = 26/72 (36%), Positives = 39/72 (54%)

Query:    79 GEAG-SHAKTFAVLSGVHSLVVCCLKRLRGKDDVINAGVAGCCTGIALSFPGEPSALLTS 137
             G+ G S+AK FA++  + S   C ++  RGK D  N+ ++GC TG A+ F     A +  
Sbjct:   118 GQRGMSYAKNFAIVGAMFSCTECLVESYRGKSDWKNSVISGCITGGAIGFRAGLKAGVIG 177

Query:   138 CISLGAFSFIMD 149
             C    AFS  +D
Sbjct:   178 CGGFAAFSAAID 189

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q5BIN4 TIMM22 "Mitochondrial import inner membrane translocase subunit Tim22" [Bos taurus (taxid:9913)]

 Score = 115 (45.5 bits), Expect = 7.1e-06, P = 7.1e-06
 Identities = 26/72 (36%), Positives = 39/72 (54%)

Query:    79 GEAG-SHAKTFAVLSGVHSLVVCCLKRLRGKDDVINAGVAGCCTGIALSFPGEPSALLTS 137
             G+ G S+AK FA++  + S   C ++  RGK D  N+ ++GC TG A+ F     A +  
Sbjct:   119 GQRGMSYAKNFAIVGAMFSCTECLVESYRGKSDWKNSVISGCITGGAIGFRAGLKAGVIG 178

Query:   138 CISLGAFSFIMD 149
             C    AFS  +D
Sbjct:   179 CGGFAAFSAAID 190

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q94EH2	TI222_ARATH	No assigned EC number	0.6208	0.9567	0.9476	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	208
pfam02466	128	pfam02466, Tim17, Tim17/Tim22/Tim23/Pmp24 family	2e-20
TIGR00980	170	TIGR00980, 3a0801so1tim17, mitochondrial import in	4e-07
PTZ00236	164	PTZ00236, PTZ00236, mitochondrial import inner mem	2e-05

>gnl|CDD|217053 pfam02466, Tim17, Tim17/Tim22/Tim23/Pmp24 family

 Score = 82.3 bits (204), Expect = 2e-20
 Identities = 40/121 (33%), Positives = 51/121 (42%), Gaps = 11/121 (9%)

Query: 44  CLMQFTGDAFAGAFMGSIFGYGAGLF-------KKKGLRGSF----GEAGSHAKTFAVLS 92
            +    G    GA  G  FG   GL         K  L G          SH   FAV  
Sbjct: 6   IVYDTGGGFLMGAVYGGFFGAPHGLVNALRSGPLKLRLNGVLNATGRRGPSHGNNFAVFG 65

Query: 93  GVHSLVVCCLKRLRGKDDVINAGVAGCCTGIALSFPGEPSALLTSCISLGAFSFIMDGLN 152
           G++S + C L++LRGK+D  N+ +AG  TG  L   G P A         AFS  ++GL 
Sbjct: 66  GLYSGIECALEKLRGKEDPWNSIIAGALTGAVLGLRGGPKAAAVGAAVGAAFSAAIEGLG 125

Query: 153 K 153
           K
Sbjct: 126 K 126

The pre-protein translocase of the mitochondrial outer membrane (Tom) allows the import of pre-proteins from the cytoplasm. Tom forms a complex with a number of proteins, including Tim17. Tim17 and Tim23 are thought to form the translocation channel of the inner membrane. This family includes Tim17, Tim22 and Tim23. This family also includes Pmp24 a peroxisomal protein. The involvement of this domain in the targeting of PMP24 remains to be proved. PMP24 was known as Pmp27 in. Length = 128

>gnl|CDD|130053 TIGR00980, 3a0801so1tim17, mitochondrial import inner membrane translocase subunit tim17

 Score = 47.9 bits (114), Expect = 4e-07
 Identities = 38/117 (32%), Positives = 55/117 (47%), Gaps = 18/117 (15%)

Query: 50  GDAFAGAF-MGSIFGYGAGLFKK-KGLRGS-FGEAGSHAKT------------FAVLSGV 94
            D F GAF MG+I   G  +F+  KG R S  GE    A              FAV  G+
Sbjct: 14  LDDFGGAFAMGTI---GGSIFQAFKGFRNSPKGEKLVGAMRAIKTRAPVLGGNFAVWGGL 70

Query: 95  HSLVVCCLKRLRGKDDVINAGVAGCCTGIALSFPGEPSALLTSCISLGAFSFIMDGL 151
            S + C +  +R K+D  N+ ++G  TG AL+  G P A+  S I       +++G+
Sbjct: 71  FSTIDCAVVAIRKKEDPWNSIISGFLTGAALAVRGGPRAMRGSAILGACILAVIEGV 127

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 170

>gnl|CDD|173487 PTZ00236, PTZ00236, mitochondrial import inner membrane translocase subunit tim17; Provisional

 Score = 43.1 bits (102), Expect = 2e-05
 Identities = 36/118 (30%), Positives = 54/118 (45%), Gaps = 12/118 (10%)

Query: 50  GDAFA-GAFMGSIFGYGAGL-FKKKGLRGSFGEAGSHAK------TFAVLSGVHSLVVCC 101
           G AF+ G   G I+ +  G+    KG R S G      +       FA+  G+ S   C 
Sbjct: 20  GGAFSMGCIGGFIWHFLKGMRNSPKGERFSGGFYLLRKRAPILGGNFAIWGGLFSTFDCT 79

Query: 102 LKRLRGKDDVINAGVAGCCTGIALSFPGEPSALLTSC----ISLGAFSFIMDGLNKQQ 155
           L+ LRGK+D  NA  +G  TG  L+  G   + + +     I LG    +  G+N++Q
Sbjct: 80  LQYLRGKEDHWNAIASGFFTGGVLAIRGGWRSAVRNAIFGGILLGIIELVSIGMNRRQ 137

Length = 164

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	208
KOG1652	183	consensus Mitochondrial import inner membrane tran	99.97
KOG3225	168	consensus Mitochondrial import inner membrane tran	99.95
TIGR00980	170	3a0801so1tim17 mitochondrial import inner membrane	99.94
PTZ00236	164	mitochondrial import inner membrane translocase su	99.93
PF02466	128	Tim17: Tim17/Tim22/Tim23/Pmp24 family; InterPro: I	99.9
TIGR00983	149	3a0801s02tim23 mitochondrial import inner membrane	99.88
KOG3324	206	consensus Mitochondrial import inner membrane tran	99.56
COG5596	191	TIM22 Mitochondrial import inner membrane transloc	99.52
COG5596	191	TIM22 Mitochondrial import inner membrane transloc	98.13
KOG4608	270	consensus Uncharacterized conserved protein [Funct	96.14
PF10247	67	Romo1: Reactive mitochondrial oxygen species modul	91.03
KOG4096	75	consensus Uncharacterized conserved protein [Funct	90.98
KOG1398	460	consensus Uncharacterized conserved protein [Funct	85.25
PTZ00236	164	mitochondrial import inner membrane translocase su	83.49

>KOG1652 consensus Mitochondrial import inner membrane translocase, subunit TIM17 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=3.9e-32  Score=228.02  Aligned_cols=164  Identities=33%  Similarity=0.390  Sum_probs=145.7

Q ss_pred             CCCCcchHHHHHHHHHHHHHHHHHHHhhhhhh-----------hccchhhHHHHhhhhHHHHHHHHhHhhhHHHHHHHhh
Q 028465           38 SASAAVCLMQFTGDAFAGAFMGSIFGYGAGLF-----------KKKGLRGSFGEAGSHAKTFAVLSGVHSLVVCCLKRLR  106 (208)
Q Consensus        38 ~~a~e~C~~r~~~~~v~G~~mG~~~Glf~g~~-----------~k~g~k~~~~~~g~~a~~FAvvGgvYSg~eC~le~lR  106 (208)
                      ...+|+|++|++.|+...+.||++-|.++..+           .+.++..+..+++.++++||+||++||.+||++..+|
T Consensus         3 e~sr~pcp~riv~d~g~afamg~igG~~f~~ikG~~nap~G~r~~gg~~av~~~ap~~ggsFAvwgglfSt~dC~Lv~~R   82 (183)
T KOG1652|consen    3 EYSREPCPIRIVDDCGGAFAMGTIGGSVFQLIKGFRNAPSGARLVGGISAVKMRAPQSGGSFAVWGGLFSTVDCALVAIR   82 (183)
T ss_pred             cccCCCCCceeeccccchhhhcccccceeeeeeeeecCCcccccccchhhhhccCcccccceeeeechhhHHHHHHHHHh
Confidence            36799999999999999999999999877643           1224566677889999999999999999999999999


Q ss_pred             cccchhHHHHHHHHhhhhccCCCCchHHHHHHHHHHHHHHHHHHHhhhhhhhhccccccccc-----CCCCccccccCCC
Q 028465          107 GKDDVINAGVAGCCTGIALSFPGEPSALLTSCISLGAFSFIMDGLNKQQPALAHSLSRQSRS-----GQFLVPRSLALPL  181 (208)
Q Consensus       107 gKdD~~Ns~iAG~~TGAiLg~r~G~~a~v~G~a~fAAfs~aid~l~~~q~a~a~~~~~~~~~-----~~~~~~~~~~~~~  181 (208)
                      +|||.||++++||+||++|+.|+|+++++.+|+.|+++.+++|.+.+++.++++....+...     .....++..++|+
T Consensus        83 ~KeDpwNsivsGa~TGg~La~r~g~~a~~~sa~~~g~~lamieg~g~~~t~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (183)
T KOG1652|consen   83 KKEDPWNSIVSGAATGGLLAARGGPKAMLTSAITGGLLLAMIEGLGIQVTKIAASQFRNQQPPLPQARSDAPLLSAQLPI  162 (183)
T ss_pred             cccchHHHHHHHhhccceeeccccHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhcccCCCCccccccccccccccCC
Confidence            99999999999999999999999999999999999999999999999999999988776522     3334456889999


Q ss_pred             chhHHHHHHHHHhhhccccc
Q 028465          182 PDELKDAFSSFCKSLRKPIK  201 (208)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~  201 (208)
                      ++|.+-+++.||+++.|+++
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~  182 (183)
T KOG1652|consen  163 GDENSGAGFGFCGSLQKPVK  182 (183)
T ss_pred             cccccccCcccchhhhhccC
Confidence            99999999999999999886

>KOG3225 consensus Mitochondrial import inner membrane translocase, subunit TIM22 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=1.5e-28  Score=203.16  Aligned_cols=115  Identities=29%  Similarity=0.447  Sum_probs=103.9

Q ss_pred             CCcchHHHHHHHHHHHHHHHHHHHhhhhhhh--------------ccchhhHHHHhhhhHHHHHHHHhHhhhHHHHHHHh
Q 028465           40 SAAVCLMQFTGDAFAGAFMGSIFGYGAGLFK--------------KKGLRGSFGEAGSHAKTFAVLSGVHSLVVCCLKRL  105 (208)
Q Consensus        40 a~e~C~~r~~~~~v~G~~mG~~~Glf~g~~~--------------k~g~k~~~~~~g~~a~~FAvvGgvYSg~eC~le~l  105 (208)
                      -.++|++|++.++|.|+++|+++|+|.+.+-              +|-++.+.+++++++++||++|++|+++||++|++
T Consensus        38 ~~n~c~~Ka~~sgV~GfglG~~~GlFlas~d~~~~dP~i~~~~ar~q~~kdMg~r~~s~~knF~~iGlvfsg~Ec~iE~~  117 (168)
T KOG3225|consen   38 EENSCAVKAVKSGVTGFGLGGAFGLFLASLDTQPNDPTIYRMPARKQVAKDMGQRSGSYAKNFAIIGLVFSGVECLIESF  117 (168)
T ss_pred             HhcchhHHHHHhhccccchhhhHHhhhhhcccCCCCCchhhhhhHHHHHHHHHhhhcchhhhhhhhhhhehhHHHHHHHH
Confidence            4569999999999999999999999998752              11234455566799999999999999999999999


Q ss_pred             hcccchhHHHHHHHHhhhhccCCCCchHHHHHHHHHHHHHHHHHHHhhh
Q 028465          106 RGKDDVINAGVAGCCTGIALSFPGEPSALLTSCISLGAFSFIMDGLNKQ  154 (208)
Q Consensus       106 RgKdD~~Ns~iAG~~TGAiLg~r~G~~a~v~G~a~fAAfs~aid~l~~~  154 (208)
                      |.|+||+|++++||+||+.++.|+||++.++||++|++||++||++++.
T Consensus       118 RAK~D~~NgaiaG~vtGg~l~~raGp~a~~~G~agfa~fS~~id~y~~~  166 (168)
T KOG3225|consen  118 RAKSDWYNGAIAGCVTGGSLGYRAGPKAAAIGCAGFAAFSAAIDKYMRG  166 (168)
T ss_pred             HhhhchhcceeeeeeeccchhhcccchhhhhchhHHHHHHHHHHHhhhc
Confidence            9999999999999999999999999999999999999999999998764

>TIGR00980 3a0801so1tim17 mitochondrial import inner membrane translocase subunit tim17

Probab=99.94  E-value=4.3e-27  Score=197.00  Aligned_cols=112  Identities=29%  Similarity=0.370  Sum_probs=101.0

Q ss_pred             CCCcchHHHHHHHHHHHHHHHHHHHhhhhhh-------hccchhhHHH----HhhhhHHHHHHHHhHhhhHHHHHHHhhc
Q 028465           39 ASAAVCLMQFTGDAFAGAFMGSIFGYGAGLF-------KKKGLRGSFG----EAGSHAKTFAVLSGVHSLVVCCLKRLRG  107 (208)
Q Consensus        39 ~a~e~C~~r~~~~~v~G~~mG~~~Glf~g~~-------~k~g~k~~~~----~~g~~a~~FAvvGgvYSg~eC~le~lRg  107 (208)
                      ..+|+|++|++++++.|+.+|.++|.+++++       ..+++++.++    +..+.+++||+||++|+++||+++++|+
T Consensus         4 ~~r~pcp~r~~d~~G~af~~G~~~G~~~g~~~G~rnsp~g~rl~g~l~av~~rap~~g~~Fav~g~lys~~ec~i~~~R~   83 (170)
T TIGR00980         4 YTREPCPYRILDDFGGAFAMGTIGGSIFQAFKGFRNSPKGEKLVGAMRAIKTRAPVLGGNFAVWGGLFSTIDCAVVAIRK   83 (170)
T ss_pred             cccCCCcchhHHhhhHHHHHHHHHHHHHHHHHHhhcCCccchhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            6799999999999999999999888887764       1234445444    5569999999999999999999999999


Q ss_pred             ccchhHHHHHHHHhhhhccCCCCchHHHHHHHHHHHHHHHHHH
Q 028465          108 KDDVINAGVAGCCTGIALSFPGEPSALLTSCISLGAFSFIMDG  150 (208)
Q Consensus       108 KdD~~Ns~iAG~~TGAiLg~r~G~~a~v~G~a~fAAfs~aid~  150 (208)
                      |||+||+++|||+||++|+.++|+++++.+|+.+++|.++||+
T Consensus        84 KeD~~NsiiAG~~TGa~l~~r~G~~a~~~~aa~gg~~la~ie~  126 (170)
T TIGR00980        84 KEDPWNSIISGFLTGAALAVRGGPRAMRGSAILGACILAVIEG  126 (170)
T ss_pred             ccchHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999997

>PTZ00236 mitochondrial import inner membrane translocase subunit tim17; Provisional

Probab=99.93  E-value=6.6e-26  Score=188.90  Aligned_cols=112  Identities=29%  Similarity=0.334  Sum_probs=94.1

Q ss_pred             CCCCcchHHHHHHHHHHHHHHHHHHHhhhhhh-------hccchhhHHH----HhhhhHHHHHHHHhHhhhHHHHHHHhh
Q 028465           38 SASAAVCLMQFTGDAFAGAFMGSIFGYGAGLF-------KKKGLRGSFG----EAGSHAKTFAVLSGVHSLVVCCLKRLR  106 (208)
Q Consensus        38 ~~a~e~C~~r~~~~~v~G~~mG~~~Glf~g~~-------~k~g~k~~~~----~~g~~a~~FAvvGgvYSg~eC~le~lR  106 (208)
                      ...+|||++|++++++.++.+|.+.|.+.+++       .++.+++.++    +...++++||+||++|+++||+++++|
T Consensus         5 ~~~r~pcp~ri~dd~G~af~~G~vgG~~~~~~~G~rnsp~g~rl~g~l~~~~~rap~~g~~FAv~G~~ys~~ec~~~~~R   84 (164)
T PTZ00236          5 DLSREPCPDRIIEDMGGAFSMGCIGGFIWHFLKGMRNSPKGERFSGGFYLLRKRAPILGGNFAIWGGLFSTFDCTLQYLR   84 (164)
T ss_pred             hhCcCCCchHHHHhccHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            36799999999999999999988888776653       3445555444    556999999999999999999999999


Q ss_pred             cccchhHHHHHHHHhhhhccCCCCchHHHHHHHHHHHHHHHHH
Q 028465          107 GKDDVINAGVAGCCTGIALSFPGEPSALLTSCISLGAFSFIMD  149 (208)
Q Consensus       107 gKdD~~Ns~iAG~~TGAiLg~r~G~~a~v~G~a~fAAfs~aid  149 (208)
                      +|||+||+++|||+||++|++++||++++.+++.++++.++||
T Consensus        85 ~K~D~~Nsi~AG~~TGa~l~~r~G~~~~~~~a~~Gg~~~~~ie  127 (164)
T PTZ00236         85 GKEDHWNAIASGFFTGGVLAIRGGWRSAVRNAIFGGILLGIIE  127 (164)
T ss_pred             ccCchHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999977766666555555555

>PF02466 Tim17: Tim17/Tim22/Tim23/Pmp24 family; InterPro: IPR003397 The membrane-embedded multi-protein complexes of mitochondria mediate the transport of nuclear-encoded proteins across and into the outer or inner mitochondrial membranes []

Probab=99.90  E-value=1.3e-23  Score=164.50  Aligned_cols=111  Identities=27%  Similarity=0.466  Sum_probs=101.3

Q ss_pred             chHHHHHHHHHHHHHHHHHHHhhhhhh-----------hccchhhHHHHhhh----hHHHHHHHHhHhhhHHHHHHHhhc
Q 028465           43 VCLMQFTGDAFAGAFMGSIFGYGAGLF-----------KKKGLRGSFGEAGS----HAKTFAVLSGVHSLVVCCLKRLRG  107 (208)
Q Consensus        43 ~C~~r~~~~~v~G~~mG~~~Glf~g~~-----------~k~g~k~~~~~~g~----~a~~FAvvGgvYSg~eC~le~lRg  107 (208)
                      ||+.|++.+++.|+++|.++|.+.+..           .+++++.+++.+++    .+..||.++++|+++||.+|++|+
T Consensus         1 ~c~~~~~~~~~~g~~~G~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~y~~~~~~l~~~R~   80 (128)
T PF02466_consen    1 SCPERILDSTGKGFVAGAVFGGFIGAISAFTRPPRGSPLRPRLRSILNAVGRRGPRHGARFGSFGGLYSGIECALERLRG   80 (128)
T ss_pred             CccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcHhHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            699999999999999999999988754           12245667777776    999999999999999999999999


Q ss_pred             ccchhHHHHHHHHhhhhccCCCCchHHHHHHHHHHHHHHHHHHHhh
Q 028465          108 KDDVINAGVAGCCTGIALSFPGEPSALLTSCISLGAFSFIMDGLNK  153 (208)
Q Consensus       108 KdD~~Ns~iAG~~TGAiLg~r~G~~a~v~G~a~fAAfs~aid~l~~  153 (208)
                      |||+||+++||++||++++.+.|++.++.+++++++++.++|++++
T Consensus        81 k~D~~N~~~aG~~aGa~~~~~~g~~~~~~~~~~~a~~~~~~~~~~~  126 (128)
T PF02466_consen   81 KDDPWNSAIAGAAAGAVLGLRSGPRGMASGAALGAAFAAAVEYYGR  126 (128)
T ss_pred             ccccchhHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999999999999999875

The TOM (translocase of the outer mitochondrial membrane) complex consists of cytosol-exposed receptors and a pore-forming core, and mediates the transport of proteins from the cytosol across and into the outer mitochondrial membrane. A novel protein complex in the outer membrane of mitochondria, called the SAM complex (sorting and assembly machinery), is involved in the biogenesis of beta-barrel proteins of the outer membrane. Two translocases of the inner mitochondrial membrane (TIM22 and TIM23 complexes) mediate protein transport at the inner membrane. The TIM23 complex (a presequence translocase) mediates the transport of presequence-containing proteins across and into the inner membrane. Tim23 and Tim17 form part of this complex. Tim23 forms a pore in the inner membrane. The role of Tim17 is not yet fully understood. The TIM22 complex (a twin-pore carrier translocase) catalyses the insertion of multi-spanning proteins that have internal targeting signals into the inner membrane. The TIM22 complex mediates the membrane insertion of multi-spanning inner-membrane proteins that have internal targeting signals, and it uses the membrane potential as an external driving force. The Tim22 subunit of the mitochondrial import inner membrane translocase is included in this family. This family also includes Pmp24, a peroxisomal membrane protein, and NADH ubiquinone dehydrogenase 1 alpha subunit 11. Pmp24 was previously known as Pmp27 [].

>TIGR00983 3a0801s02tim23 mitochondrial import inner membrane translocase subunit tim23

Probab=99.88  E-value=2.5e-22  Score=164.99  Aligned_cols=112  Identities=19%  Similarity=0.157  Sum_probs=96.5

Q ss_pred             ccCCCCCcchHHHHHHHHHHHHHHHHHHHhhhhhhh-------ccchhhHHHHhh----hhHHHHHHHHhHhhhHHHHHH
Q 028465           35 AVPSASAAVCLMQFTGDAFAGAFMGSIFGYGAGLFK-------KKGLRGSFGEAG----SHAKTFAVLSGVHSLVVCCLK  103 (208)
Q Consensus        35 ~~~~~a~e~C~~r~~~~~v~G~~mG~~~Glf~g~~~-------k~g~k~~~~~~g----~~a~~FAvvGgvYSg~eC~le  103 (208)
                      |.|.|..+.| +++..++++|.++|+++|++.++..       |++++.+++.++    +.+++||+|+++|+++||.++
T Consensus        26 ~~R~~~e~~~-~~~G~ay~~G~~~Gg~~Gl~~G~~~~~~~~~~k~rln~~ln~~~~~g~~~G~~~g~~g~lys~~e~~i~  104 (149)
T TIGR00983        26 PSRGWFEDLC-FGTGTCYLTGLAIGALNGLRLGLKETQSMPWTKLRLNQILNMVTRRGPFWGNTLGILALVYNGINSIIE  104 (149)
T ss_pred             CCCChhhhhh-hhHhHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888665555 7788899999999999999998762       334555565554    788999999999999999999


Q ss_pred             HhhcccchhHHHHHHHHhhhhccCCCCchHHHHHHHHHHHHHHH
Q 028465          104 RLRGKDDVINAGVAGCCTGIALSFPGEPSALLTSCISLGAFSFI  147 (208)
Q Consensus       104 ~lRgKdD~~Ns~iAG~~TGAiLg~r~G~~a~v~G~a~fAAfs~a  147 (208)
                      ++|+|||+||+++||++||++|+.++|+++++.+|++.+++..+
T Consensus       105 ~~R~k~D~~Nsv~AGa~TGal~~~~~G~r~~~~g~~~G~~l~~~  148 (149)
T TIGR00983       105 ATRGKHDDFNSVAAGALTGALYKSTRGLRGMARSGALGATAAGV  148 (149)
T ss_pred             HHhccchhhHhHHHHHHHHHHHHhccChHHHHHHhHHHHHHhhc
Confidence            99999999999999999999999999999999999987776653

>KOG3324 consensus Mitochondrial import inner membrane translocase, subunit TIM23 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.56  E-value=4.2e-15  Score=127.03  Aligned_cols=114  Identities=19%  Similarity=0.150  Sum_probs=91.9

Q ss_pred             CCcccccCCCCCcchHHHHHHHHHHHHHHHHHHHhhhhhhh-------ccchhhHHHHh----hhhHHHHHHHHhHhhhH
Q 028465           30 SKAIVAVPSASAAVCLMQFTGDAFAGAFMGSIFGYGAGLFK-------KKGLRGSFGEA----GSHAKTFAVLSGVHSLV   98 (208)
Q Consensus        30 ~~~~~~~~~~a~e~C~~r~~~~~v~G~~mG~~~Glf~g~~~-------k~g~k~~~~~~----g~~a~~FAvvGgvYSg~   98 (208)
                      +.+.++++.|-.+-| +.+...++.|+++|+..|+..++..       |.+...++...    -..+...++++.+|+++
T Consensus        64 ~eg~~~~rgw~E~l~-f~tG~~yl~G~~iGa~~G~~~Glk~~e~~~~~Klr~nrILN~~t~~G~~~gN~lG~laL~Ysai  142 (206)
T KOG3324|consen   64 EEGAIKRRGWFENLT-FGTGWAYLTGSAIGAFNGLILGLKNTENGASGKLRLNRILNSVTRRGRFWGNTLGSLALMYSAI  142 (206)
T ss_pred             hhccccccchhhhhh-eeccchhccchhhhhHHHHHHhhhcCCCCCccchhHHHHhhhccccccccccchhHHHHHHHHH
Confidence            366788888665555 5566689999999999999998751       22333344433    36678889999999999


Q ss_pred             HHHHHHhhcccchhHHHHHHHHhhhhccCCCCchHHHHHHHHHHHH
Q 028465           99 VCCLKRLRGKDDVINAGVAGCCTGIALSFPGEPSALLTSCISLGAF  144 (208)
Q Consensus        99 eC~le~lRgKdD~~Ns~iAG~~TGAiLg~r~G~~a~v~G~a~fAAf  144 (208)
                      |..++..|+|||+||+++||++||+++....|++++..+++..+..
T Consensus       143 esgI~~~R~~dd~lnsv~AGalTGalyrs~~Glr~~av~ga~g~~a  188 (206)
T KOG3324|consen  143 ESGIEATRGKDDDLNSVAAGALTGALYRSTRGLRAAAVAGAVGGTA  188 (206)
T ss_pred             HHHHHHhhccccchhhhhhhhhhhhhhhcCCCchHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999998887664333

>COG5596 TIM22 Mitochondrial import inner membrane translocase, subunit TIM22 [Posttranslational modification, protein turnover, chaperones]

Probab=99.52  E-value=6.4e-16  Score=131.00  Aligned_cols=116  Identities=25%  Similarity=0.256  Sum_probs=99.9

Q ss_pred             CCCcchHHHHHHHHHHHHHHHHHHHhhhhhh-----------------------------hccchhhHHHHhh----hhH
Q 028465           39 ASAAVCLMQFTGDAFAGAFMGSIFGYGAGLF-----------------------------KKKGLRGSFGEAG----SHA   85 (208)
Q Consensus        39 ~a~e~C~~r~~~~~v~G~~mG~~~Glf~g~~-----------------------------~k~g~k~~~~~~g----~~a   85 (208)
                      ...++|+.+.+.+++.|+.+|...|.|+..+                             .+.+.+..+++++    .++
T Consensus        41 ~~~~~~i~k~~~s~l~G~~~g~~~g~f~ssl~y~t~~~~~~g~nfg~vwGgl~~~i~~~~~r~q~~~~~~n~~~rg~ftG  120 (191)
T COG5596          41 AFSYSCIGKSALSGLKGFRLGGPSGGFSSSLAYGTGLVHLLGLNFGGVWGGLFSTIDCTPFRLQLKEQLNNAGKRGFFTG  120 (191)
T ss_pred             chhhcchhhhhhhcccccccccccccchhhcccccccccccCccccccccceeeccccchHHHHHhhccccccccccccc
Confidence            4557899999999999999999999887532                             1122333344443    889


Q ss_pred             HHHHHHHhHhhhHHHHHHHhhcccchhHHHHHHHHhhhhccCCCCchHHHHHHHHHHHHHHHHHHHhhh
Q 028465           86 KTFAVLSGVHSLVVCCLKRLRGKDDVINAGVAGCCTGIALSFPGEPSALLTSCISLGAFSFIMDGLNKQ  154 (208)
Q Consensus        86 ~~FAvvGgvYSg~eC~le~lRgKdD~~Ns~iAG~~TGAiLg~r~G~~a~v~G~a~fAAfs~aid~l~~~  154 (208)
                      ++||++|.+|.+.+|.++.+|+|||+.|++.+|+.||+.+..+.|+|++.++.+.|++|+..++..+|.
T Consensus       121 ~n~GvlGl~y~~~ns~I~~~r~k~d~~~~iaaG~~TGa~~~~~~g~qa~~~~~a~~aa~s~~~~~~~~~  189 (191)
T COG5596         121 KNLGVLGLIYAGINSIITALRAKHDIANAIAAGAFTGAALASSAGPQAMPMGGAGFAAFSAGITLAMKS  189 (191)
T ss_pred             cccceeeeecccchhhhhhhhhccccchhhhhhhhhhHHHHhhccccccccCccchhhhhhhHHhhhhc
Confidence            999999999999999999999999999999999999999999999999999999999999999987664

>COG5596 TIM22 Mitochondrial import inner membrane translocase, subunit TIM22 [Posttranslational modification, protein turnover, chaperones]

Probab=98.13  E-value=7.4e-07  Score=76.16  Aligned_cols=125  Identities=23%  Similarity=0.272  Sum_probs=91.9

Q ss_pred             CCCCCcccccCCCCCcchHHHHHHHHHHHHHHHHHHHhhhhhhh-------ccchhhHHH----HhhhhHHHHH-HHHhH
Q 028465           27 PNSSKAIVAVPSASAAVCLMQFTGDAFAGAFMGSIFGYGAGLFK-------KKGLRGSFG----EAGSHAKTFA-VLSGV   94 (208)
Q Consensus        27 ~~~~~~~~~~~~~a~e~C~~r~~~~~v~G~~mG~~~Glf~g~~~-------k~g~k~~~~----~~g~~a~~FA-vvGgv   94 (208)
                      +|.++-|-+   ..+++|+.-.+.+...++-++.+.+..+..++       -.++...+.    ...-.+++|| +||++
T Consensus        16 ~~~~~~lS~---~e~d~~~~~~l~~~~~~~~~~~i~k~~~s~l~G~~~g~~~g~f~ssl~y~t~~~~~~g~nfg~vwGgl   92 (191)
T COG5596          16 PNAYNILSP---EERDPCPLEKLADFMKAFSYSCIGKSALSGLKGFRLGGPSGGFSSSLAYGTGLVHLLGLNFGGVWGGL   92 (191)
T ss_pred             CCcccccCh---hhcCchhhhHHhhhccchhhcchhhhhhhcccccccccccccchhhcccccccccccCccccccccce
Confidence            444444444   48899999999999999988888888765432       112222332    3347788998 99999


Q ss_pred             hhhHHHHHHHhhcccchhHHHHHHHHhhhhccCCCC----chHHHH---------HHHHHHHHHHHHHHHhhh
Q 028465           95 HSLVVCCLKRLRGKDDVINAGVAGCCTGIALSFPGE----PSALLT---------SCISLGAFSFIMDGLNKQ  154 (208)
Q Consensus        95 YSg~eC~le~lRgKdD~~Ns~iAG~~TGAiLg~r~G----~~a~v~---------G~a~fAAfs~aid~l~~~  154 (208)
                      ++.++|..+++|.|+|.||....|+.||..++..+.    ....+-         ..+++++|.++.-...+.
T Consensus        93 ~~~i~~~~~r~q~~~~~~n~~~rg~ftG~n~GvlGl~y~~~ns~I~~~r~k~d~~~~iaaG~~TGa~~~~~~g  165 (191)
T COG5596          93 FSTIDCTPFRLQLKEQLNNAGKRGFFTGKNLGVLGLIYAGINSIITALRAKHDIANAIAAGAFTGAALASSAG  165 (191)
T ss_pred             eeccccchHHHHHhhccccccccccccccccceeeeecccchhhhhhhhhccccchhhhhhhhhhHHHHhhcc
Confidence            999999999999999999999999999999888754    333333         345577777776554333

>KOG4608 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.14  E-value=0.0009  Score=59.69  Aligned_cols=53  Identities=21%  Similarity=0.172  Sum_probs=44.9

Q ss_pred             hhHHHHHHHHhHhhhHHHHHHHhhcccchhHHHHHHHHhhhhccCCCCchHHH
Q 028465           83 SHAKTFAVLSGVHSLVVCCLKRLRGKDDVINAGVAGCCTGIALSFPGEPSALL  135 (208)
Q Consensus        83 ~~a~~FAvvGgvYSg~eC~le~lRgKdD~~Ns~iAG~~TGAiLg~r~G~~a~v  135 (208)
                      ..|-..|++.+.|-++...+..+|+|+|.||=+++|.+||+++.+.-|+..++
T Consensus       133 ~~G~R~alfttSff~l~t~l~vyRgk~a~~~fvaaga~tgsvF~~~~gL~g~a  185 (270)
T KOG4608|consen  133 RWGWRTALFTTSFFTLNTSLNVYRGKDALSHFVAAGAVTGSVFRINVGLRGLA  185 (270)
T ss_pred             cceeEEeeehhhHHHHHHHHHHHcCchhhhhhhccccceeeeEEeehhhHHHh
Confidence            33445588888999999999999999999999999999999999887765544

>PF10247 Romo1: Reactive mitochondrial oxygen species modulator 1; InterPro: IPR018450 The majority of endogenous reactive oxygen species (ROS) in cells are produced by the mitochondrial respiratory chain

Probab=91.03  E-value=0.43  Score=34.89  Aligned_cols=58  Identities=22%  Similarity=0.356  Sum_probs=38.8

Q ss_pred             chHHHHHHHHHHHHHHHHHHHhhhhhh----hccchhhHHHHh----hhhHHHHHHHHhHhhhHHH
Q 028465           43 VCLMQFTGDAFAGAFMGSIFGYGAGLF----KKKGLRGSFGEA----GSHAKTFAVLSGVHSLVVC  100 (208)
Q Consensus        43 ~C~~r~~~~~v~G~~mG~~~Glf~g~~----~k~g~k~~~~~~----g~~a~~FAvvGgvYSg~eC  100 (208)
                      +|+-|+-+....|..+|..+|.+.+.+    .+.+-++.++..    -.++..|+.+=++=+.++|
T Consensus         2 sc~~kikmG~~MG~~VG~~~G~l~G~~~~~r~g~~~~~~~~~lg~~~l~sg~tFG~Fm~iGs~IRc   67 (67)
T PF10247_consen    2 SCFDKIKMGFMMGGAVGGAFGALFGTFSAFRYGARGRGLMRTLGKYMLGSGATFGFFMSIGSVIRC   67 (67)
T ss_pred             cHHHHHHHHHHHhhHHHhhhhhhhhhHHHhccCCCCcchHhHHhHHHhcchhHHHHHHhhhccccC
Confidence            799999999999999999888887754    122223334433    3667777776555555444

An increase or imbalance in ROS alters the intracellular redox homeostasis, triggers DNA damage, and may contribute to cancer development and progression. This entry contains the mitochondrial protein, reactive oxygen species modulator 1 (Romo1), that is responsible for increasing the level of ROS in cells. In various cancer cell lines with elevated levels of ROS there is also an increased abundance of Romo1 []. Increased Romo1 expression can have a number of other affects including: inducing premature senescence of cultured human fibroblasts [, ] and increased resistance to 5-fluorouracil [].

>KOG4096 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.98  E-value=0.39  Score=35.78  Aligned_cols=62  Identities=23%  Similarity=0.271  Sum_probs=43.2

Q ss_pred             CCcchHHHHHHHHHHHHHHHHHHHhhhhhh----hccchhhHHHHh----hhhHHHHHHHHhHhhhHHHH
Q 028465           40 SAAVCLMQFTGDAFAGAFMGSIFGYGAGLF----KKKGLRGSFGEA----GSHAKTFAVLSGVHSLVVCC  101 (208)
Q Consensus        40 a~e~C~~r~~~~~v~G~~mG~~~Glf~g~~----~k~g~k~~~~~~----g~~a~~FAvvGgvYSg~eC~  101 (208)
                      ...+|+.|+-+..+.|..+|...|.+.+-+    ...+-++.++..    -.++.+|+.+=++=++++|.
T Consensus         3 ~qpSc~dKikmG~~mG~avG~a~G~lfGgf~~lR~g~~g~~~vr~iGkt~~~SagtFG~FM~igs~Ir~~   72 (75)
T KOG4096|consen    3 QQPSCFDKIKMGLMMGGAVGGATGALFGGFAALRYGPRGRGLVRTIGKTMLQSAGTFGLFMGIGSGIRCG   72 (75)
T ss_pred             CCccHHHHHHHHHHHHhhhhhhhhhhccchhheeecCChhHHHHHHhHHHHhccchhhhhhhhhhheecC
Confidence            456899999998888888877777766533    222333344444    47788898888888888775

>KOG1398 consensus Uncharacterized conserved protein [Function unknown]

Probab=85.25  E-value=1.1  Score=42.92  Aligned_cols=45  Identities=20%  Similarity=0.344  Sum_probs=40.3

Q ss_pred             hhHHHHHHHHhHhhhHHHHHHHhhcccchhHHHHHHHHhhhhccC
Q 028465           83 SHAKTFAVLSGVHSLVVCCLKRLRGKDDVINAGVAGCCTGIALSF  127 (208)
Q Consensus        83 ~~a~~FAvvGgvYSg~eC~le~lRgKdD~~Ns~iAG~~TGAiLg~  127 (208)
                      +.+.-.+.+-++|.++.|+++++|-+||..|+++||.+++..+..
T Consensus       301 qlg~FlgsfvfIfkatsC~lr~v~n~dd~l~aifAgglAs~Smmf  345 (460)
T KOG1398|consen  301 QLGSFLGSFVFIFKATSCALRKVANKDDKLVAIFAGGLASLSMMF  345 (460)
T ss_pred             hhhHHHHHHHHHHHhHHHHHHHhccCcHHHHHHHHhhhhhheeee
Confidence            566777889999999999999999999999999999999876654

>PTZ00236 mitochondrial import inner membrane translocase subunit tim17; Provisional

Probab=83.49  E-value=13  Score=31.57  Aligned_cols=78  Identities=12%  Similarity=0.036  Sum_probs=56.3

Q ss_pred             hhhhHHHHHHHHhHhhhHHHHHHHhhcccchhHHHHHHHHhhhhccCCCCchHHHHHHHH---HHHHHHHHHHHhhhhhh
Q 028465           81 AGSHAKTFAVLSGVHSLVVCCLKRLRGKDDVINAGVAGCCTGIALSFPGEPSALLTSCIS---LGAFSFIMDGLNKQQPA  157 (208)
Q Consensus        81 ~g~~a~~FAvvGgvYSg~eC~le~lRgKdD~~Ns~iAG~~TGAiLg~r~G~~a~v~G~a~---fAAfs~aid~l~~~q~a  157 (208)
                      .+..+..-++..++.+.++..-++-=-.+-.+-..+.|.+-++--+.++-..+++.|++.   +..++.+++++...++.
T Consensus        63 g~~FAv~G~~ys~~ec~~~~~R~K~D~~Nsi~AG~~TGa~l~~r~G~~~~~~~a~~Gg~~~~~ie~~~i~~~~~~~~~~~  142 (164)
T PTZ00236         63 GGNFAIWGGLFSTFDCTLQYLRGKEDHWNAIASGFFTGGVLAIRGGWRSAVRNAIFGGILLGIIELVSIGMNRRQMRTPR  142 (164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence            344455556777777888877777767788888899999888888888777888888877   55666667666554444


Q ss_pred             h
Q 028465          158 L  158 (208)
Q Consensus       158 ~  158 (208)
                      +
T Consensus       143 ~  143 (164)
T PTZ00236        143 Q  143 (164)
T ss_pred             H
Confidence            3

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	208
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.8 bits (110), Expect = 2e-06
 Identities = 34/246 (13%), Positives = 64/246 (26%), Gaps = 72/246 (29%)

Query: 13  DANDTETNPNPIPNPNSSKAIVAVPSASAAV-----CLMQFTGDAFAGAFMGSIF--GYG 65
           D  D +  P  I +      I+    A +        L+    +     F+  +    Y 
Sbjct: 34  DCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLS-KQEEMVQKFVEEVLRINYK 92

Query: 66  AGLFKKKGLRGSFGEAGSHAKTFA-----VLSGVHSLV---VC----------CLKRLRG 107
              F    ++    +     + +      + +         V            L  LR 
Sbjct: 93  ---FLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRP 149

Query: 108 KDDVINAGVAGC---------C--TGIALSFPG-----------EPSALLTSCISLGAFS 145
             +V+  GV G          C    +                  P  +L     L    
Sbjct: 150 AKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVL---EMLQKLL 206

Query: 146 FIMDGLNKQQP-----------ALAHSLSRQSRSGQFLVPRSLALPLPD----ELKDAFS 190
           + +D     +            ++   L R  +S  +     L L L +    +  +AF+
Sbjct: 207 YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY--ENCL-LVLLNVQNAKAWNAFN 263

Query: 191 SFCKSL 196
             CK L
Sbjct: 264 LSCKIL 269

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00