Citrus Sinensis ID: 028883

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200--
Protein Sequence
MFNNSKRPNSVRTVSRGTIPVLASSNGSATSRRKDDSSVREPSTVFEEENPNGDSTDAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQILVIRVPLLSEDWSEDDVINSIRMPSHVQVASVPRNNAKNAALYAVKVLGIADEDLLERIRKYVEE
Secondary Structure (PSIPRED)
ccccccccccccccccccEEEEcccHHHHHHHcccccccccccccccccccccccccccEEEEEEcccccHHHHHHHHHHHHHHccccEEEEccccccHHHHHHHHHHHHHcccEEEEEcccccccccHHHHccccccEEEEccccccccccHHEEccccccccEEEcEEcccHHHHHHHHHHHHccccHHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccEEEEEEcccHHHHHHHHHHHHcccccccccHHcccccccccccEEEEEEccHHHHHHHHHHHHHHHHcccEEEEEEccccccHHHHHHHHHHcccccccEEEEEEEccccHHHHHHHHccccEEEEEEcccccccHHHHHHHEccccccEEEEEEccHHHHHHHHHHHHHcccHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mfnnskrpnsvrtvsrgtipvlassngsatsrrkddssvrepstvfeeenpngdstdapivgiimesdldlpvmndaartlsdfgvpyeikilpphqncKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQILVIRVpllsedwseddvinsirmpshvqvasvprnnaknAALYAVKVLGIADEDLLERIRKYVEE
Flexible Loop (DISEMBL)
mfnnskrpnsvrtvsrgtipvlassngsatsrrkddssvrepstvfeeenpngdstdapIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQILVIRVPLLSEDWSEDDVINSIRMPSHVQVASVPRNNAKNAALYAVKVLGIADEDLLERIRKYVEE
Low Complexity Region (SEG)
MFNNSKRPNSVRTVSRGTIPVLASSNGSATSRRKDDSSVREPSTVFEEENPNGDSTDAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQILVIRVPLLSEDWSEDDVINSIRMPSHVQVASVPRNNAKNAALYAVKVLGIADEDLLERIRKYVEE
Disordered region (IsUnstruct)
***********************************************************IVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQILVIRVPLLSEDWSEDDVINSIRMPSHVQVASVPRNNAKNAALYAVKVLGIADEDLLERIRK****
Disordered Region (DISOPRED)
**************SRGTIPVLASSNGS*********************************GIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQILVIRVPLLSEDWSEDDVINSIRMPSHVQVASVPRNNAKNAALYAVKVLGIADEDLLERIRKY***
Disordered Region (DISEMBL)
*************VSRGTIPVLA****************************NGDSTDAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQILVIRVPLLSEDWSEDDVINSIRMPSHVQVASVPRNNAKNAALYAVKVLGIADEDLLERIRKYVEE
Disordered Region (DISPRO)
*****KRPNSVRTVSRGTIPVLASSNGSATSRRKDDSSVR***************TDAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQILVIRVPLLSEDWSEDDVINSIRMPSHVQVASVPRNNAKNAALYAVKVLGIADEDLLERIRKYV**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MFNNSKRPNSVRTVSRGTIPVLASSNGSATSRRKDDSSVREPSTVFEEENPNGDSTDAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQILVIRVPLLSEDWSEDDVINSIRMPSHVQVASVPRNNAKNAALYAVKVLGIADEDLLERIRKYVEE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	202	2.2.26 [Sep-21-2011]
O58058	177	N5-carboxyaminoimidazole	yes	no	0.727	0.830	0.466	5e-31
P21264	571	Phosphoribosylaminoimidaz	yes	no	0.970	0.343	0.381	2e-26
Q92210	568	Phosphoribosylaminoimidaz	N/A	no	0.935	0.332	0.389	3e-26
Q9UY68	174	N5-carboxyaminoimidazole	yes	no	0.712	0.827	0.455	4e-26
P55195	557	Phosphoribosylaminoimidaz	N/A	no	0.707	0.256	0.423	1e-25
P50504	557	Phosphoribosylaminoimidaz	N/A	no	0.940	0.341	0.378	1e-25
Q9WYS7	171	N5-carboxyaminoimidazole	yes	no	0.707	0.836	0.444	3e-25
Q44679	177	N5-carboxyaminoimidazole	N/A	no	0.712	0.813	0.406	2e-24
O74197	570	Phosphoribosylaminoimidaz	yes	no	0.737	0.261	0.406	6e-24
Q01930	543	Phosphoribosylaminoimidaz	N/A	no	0.668	0.248	0.426	8e-23

>sp|O58058|PURE_PYRHO N5-carboxyaminoimidazole ribonucleotide mutase OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) GN=purE PE=3 SV=1

 Score =  134 bits (336), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 69/148 (46%), Positives = 106/148 (71%), Gaps = 1/148 (0%)

Query: 56  TDAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIK 115
           ++ P+VGIIM SD DLPVM +AAR L +FGVPYEI I+  H+  + A  YA  A+ERGI+
Sbjct: 7   SEKPLVGIIMGSDSDLPVMKEAARILEEFGVPYEITIISAHRTPERAYEYAKKAEERGIE 66

Query: 116 IIIVGDGVEAHLSGVAAANSQILVIRVPLLSEDWSE-DDVINSIRMPSHVQVASVPRNNA 174
           +II G G  AHL G+ A+ + + VI VP+ S+  +  D +++ ++MPS + VA+V  +NA
Sbjct: 67  VIIAGAGGAAHLPGIIASLTVLPVIGVPIKSKALNGLDSLLSIVQMPSGIPVATVAIDNA 126

Query: 175 KNAALYAVKVLGIADEDLLERIRKYVEE 202
           KNAAL A+++LGI   ++ E++R+Y+++
Sbjct: 127 KNAALLALRILGIKYPEIKEKLRRYMKD 154

Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR).
Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) (taxid: 70601)
EC: 5EC: .EC: 4EC: .EC: 9EC: 9EC: .EC: 1EC: 8

>sp|P21264|PUR6_YEAST Phosphoribosylaminoimidazole carboxylase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ADE2 PE=1 SV=1

 Score =  119 bits (298), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 77/202 (38%), Positives = 113/202 (55%), Gaps = 6/202 (2%)

Query: 1   MFNNSKRPNSVRTVSRGTIPVLASSNGSATSRRKDDSSVRE-PSTVFEEENPNGDSTDAP 59
           ++    RPN  R V  G I ++ASS      R    +   + P  +   +  + ++   P
Sbjct: 348 LYGKESRPN--RKV--GHINIIASSMAECEQRLNYITGRTDIPIKISVAQKLDLEAMVKP 403

Query: 60  IVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIV 119
           +VGIIM SD DLPVM+ A   L DFGVP+E+ I+  H+      +YA+SA +RGIK II 
Sbjct: 404 LVGIIMGSDSDLPVMSAACAVLKDFGVPFEVTIVSAHRTPHRMSAYAISASKRGIKTIIA 463

Query: 120 GDGVEAHLSGVAAANSQILVIRVPLLSEDWSEDDVINSI-RMPSHVQVASVPRNNAKNAA 178
           G G  AHL G+ AA + + VI VP+        D ++SI +MP  V VA+V  NN+ NAA
Sbjct: 464 GAGGAAHLPGMVAAMTPLPVIGVPVKGSCLDGVDSLHSIVQMPRGVPVATVAINNSTNAA 523

Query: 179 LYAVKVLGIADEDLLERIRKYV 200
           L AV++LG  D     ++ +++
Sbjct: 524 LLAVRLLGAYDSSYTTKMEQFL 545

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 1

>sp|Q92210|PUR6_CANAL Phosphoribosylaminoimidazole carboxylase OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=ADE2 PE=3 SV=2

 Score =  118 bits (295), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 79/203 (38%), Positives = 111/203 (54%), Gaps = 14/203 (6%)

Query: 1   MFNNSKRPNSVRTVSRGTIPVLASSNGSATSRRKDDSSVREPSTVFEEENPNGDSTD--A 58
           ++  + RP        G I V+ SS   A SR    S +   +T    E P   +TD  +
Sbjct: 348 LYGKTTRPER----KMGHINVVTSSMQDAESRL---SYILGDTT----EIPKSLATDKES 396

Query: 59  PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIII 118
           P+VGIIM SD DLPVM   AR L  FGVP+E+ I+  H+       YA+ A +RG+K II
Sbjct: 397 PLVGIIMGSDSDLPVMAVGARILKQFGVPFELTIVSAHRTPHRMSEYAIEAPKRGLKCII 456

Query: 119 VGDGVEAHLSGVAAANSQILVIRVPLLSEDWSEDDVINSI-RMPSHVQVASVPRNNAKNA 177
            G G  AHL G+ AA + + VI VP+        D ++SI +MP  + VA+V  NN+ NA
Sbjct: 457 AGAGGAAHLPGMVAAMTPLPVIGVPVKGSTLDGVDSLHSIVQMPRGIPVATVAINNSTNA 516

Query: 178 ALYAVKVLGIADEDLLERIRKYV 200
           AL A+++LG  D   L  + +Y+
Sbjct: 517 ALLAIRILGAYDSKWLTEMNQYM 539

Candida albicans (strain SC5314 / ATCC MYA-2876) (taxid: 237561)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 1

>sp|Q9UY68|PURE_PYRAB N5-carboxyaminoimidazole ribonucleotide mutase OS=Pyrococcus abyssi (strain GE5 / Orsay) GN=purE PE=3 SV=1

 Score =  117 bits (294), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 66/145 (45%), Positives = 98/145 (67%), Gaps = 1/145 (0%)

Query: 59  PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIII 118
           P VGIIM SD DLPVM +AA+ L DF V YE+K++  H+  +    YA +A+ERGI++II
Sbjct: 7   PKVGIIMGSDSDLPVMKEAAKVLEDFEVDYEMKVISAHRTPERLHEYARTAEERGIEVII 66

Query: 119 VGDGVEAHLSGVAAANSQILVIRVPLLSEDWSE-DDVINSIRMPSHVQVASVPRNNAKNA 177
            G G  AHL GV AA + I VI VP+ S+  +  D +++ ++MP  + VA+V  + AKNA
Sbjct: 67  AGAGGAAHLPGVLAALTMIPVIGVPIKSKALNGLDSLLSIVQMPPGIPVATVGIDGAKNA 126

Query: 178 ALYAVKVLGIADEDLLERIRKYVEE 202
           AL A+++L I   ++ E+++KY E+
Sbjct: 127 ALLALEILSIKYPEIKEKLKKYRED 151

Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR).

Pyrococcus abyssi (strain GE5 / Orsay) (taxid: 272844)

EC: 5

EC: .

EC: 4

EC: .

EC: 9

EC: 9

EC: .

EC: 1

EC: 8

>sp|P55195|PUR6_VIGAC Phosphoribosylaminoimidazole carboxylase, chloroplastic (Fragment) OS=Vigna aconitifolia GN=PURKE PE=2 SV=1

 Score =  116 bits (290), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 61/144 (42%), Positives = 94/144 (65%), Gaps = 1/144 (0%)

Query: 60  IVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIV 119
           ++G IM SD DLPVM  AA  +  FGVP+E++I+  H+  +    YA SA ERG ++II 
Sbjct: 390 LLGFIMGSDSDLPVMKSAAEMMEMFGVPHEVRIVSAHRTPELMFCYASSAHERGYQVIIA 449

Query: 120 GDGVEAHLSGVAAANSQILVIRVPLLSEDW-SEDDVINSIRMPSHVQVASVPRNNAKNAA 178
           G G  AHL G+ A+ + + V+ VP+ +      D +++ ++MP  V VA+V  NNA NA 
Sbjct: 450 GAGGAAHLPGMVASLTPLPVVGVPVRASTLDGLDSLLSIVQMPRGVPVATVAVNNATNAG 509

Query: 179 LYAVKVLGIADEDLLERIRKYVEE 202
           L AV++LG+A+++LL R+ +Y E+
Sbjct: 510 LLAVRMLGVANDNLLSRMSQYQED 533

Vigna aconitifolia (taxid: 3918)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 1

>sp|P50504|PUR6_SCHOC Phosphoribosylaminoimidazole carboxylase OS=Schwanniomyces occidentalis GN=ADE2 PE=3 SV=1

 Score =  115 bits (289), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 76/201 (37%), Positives = 110/201 (54%), Gaps = 11/201 (5%)

Query: 1   MFNNSKRPNSVRTVSRGTIPVLASSNGSATSRRKDDSSVREPSTVFEEENPNGDSTDAPI 60
           ++  S RPN       G I +++SS     SR   D  + + S + E   P     + P+
Sbjct: 345 LYGKSTRPNR----KMGHINIVSSSMEDCESRL--DYIIGKSSKIPENLIPK----EKPL 394

Query: 61  VGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVG 120
           V IIM SD DLPVM+  A  L  FGVP+E+ I+  H+       YA+ A +RG+K+II G
Sbjct: 395 VSIIMGSDSDLPVMSVGANILKRFGVPFELTIVSAHRTPHRMTQYAIEAPKRGLKVIIAG 454

Query: 121 DGVEAHLSGVAAANSQILVIRVPLLSEDWSEDDVINSI-RMPSHVQVASVPRNNAKNAAL 179
            G  AHL G+ AA + + VI VP+        D ++SI +MP  + VA+V  NN+ NAAL
Sbjct: 455 AGGAAHLPGMVAAMTPLPVIGVPVKGSTLDGVDSLHSIVQMPRGIPVATVAINNSTNAAL 514

Query: 180 YAVKVLGIADEDLLERIRKYV 200
            AV++LG  D   L  + +Y+
Sbjct: 515 LAVRILGAYDYKWLNEMNQYM 535

Schwanniomyces occidentalis (taxid: 27300)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 1

>sp|Q9WYS7|PURE_THEMA N5-carboxyaminoimidazole ribonucleotide mutase OS=Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) GN=purE PE=1 SV=1

 Score =  114 bits (286), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 64/144 (44%), Positives = 90/144 (62%), Gaps = 1/144 (0%)

Query: 59  PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIII 118
           P VGIIM SD DLPVM  AA  L +FG+ YEI I+  H+       YA +A+ERGI++II
Sbjct: 2   PRVGIIMGSDSDLPVMKQAAEILEEFGIDYEITIVSAHRTPDRMFEYAKNAEERGIEVII 61

Query: 119 VGDGVEAHLSGVAAANSQILVIRVPLLSEDWSEDDVINSI-RMPSHVQVASVPRNNAKNA 177
            G G  AHL G+ A+ + + VI VP+ +   +  D + SI +MP  V VA+V  NNAKNA
Sbjct: 62  AGAGGAAHLPGMVASITHLPVIGVPVKTSTLNGLDSLFSIVQMPGGVPVATVAINNAKNA 121

Query: 178 ALYAVKVLGIADEDLLERIRKYVE 201
            + A  +LGI   ++  ++++Y E
Sbjct: 122 GILAASILGIKYPEIARKVKEYKE 145

Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR).

Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) (taxid: 243274)

EC: 5

EC: .

EC: 4

EC: .

EC: 9

EC: 9

EC: .

EC: 1

EC: 8

>sp|Q44679|PURE_CORAM N5-carboxyaminoimidazole ribonucleotide mutase OS=Corynebacterium ammoniagenes GN=purE PE=3 SV=1

 Score =  112 bits (280), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 59/145 (40%), Positives = 90/145 (62%), Gaps = 1/145 (0%)

Query: 58  APIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKII 117
           AP+VG+IM SD D P +  AA  L +FGVP+E+ ++  H+  ++ L YA  A  RGIK+I
Sbjct: 3   APLVGLIMGSDSDWPTVEPAAEVLDEFGVPFEVGVVSAHRTPEKMLDYAKQAHTRGIKVI 62

Query: 118 IVGDGVEAHLSGVAAANSQILVIRVPLLSEDWSE-DDVINSIRMPSHVQVASVPRNNAKN 176
           +   G  AHL G+ AA + + VI +P   +D    D +++ ++MP+ V VA+V    AKN
Sbjct: 63  VACAGGAAHLPGMVAAATPLPVIGIPRALKDLEGLDSLLSIVQMPAGVPVATVSIGGAKN 122

Query: 177 AALYAVKVLGIADEDLLERIRKYVE 201
           A L A++ LG+   +L+ER+  Y E
Sbjct: 123 AGLLAIRTLGVQYSELVERMADYQE 147

Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR).

Corynebacterium ammoniagenes (taxid: 1697)

EC: 5

EC: .

EC: 4

EC: .

EC: 9

EC: 9

EC: .

EC: 1

EC: 8

>sp|O74197|PUR6_CANGA Phosphoribosylaminoimidazole carboxylase OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=ADE2 PE=3 SV=2

 Score =  110 bits (275), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 61/150 (40%), Positives = 91/150 (60%), Gaps = 1/150 (0%)

Query: 52  NGDSTDAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKE 111
           N +    P+VG+IM SD DLPVM+ A + L  F VP+E+ I+  H+       YA  A  
Sbjct: 395 NAEEVRKPLVGVIMGSDSDLPVMSAACKMLEQFEVPFEVTIVSAHRTPYRMNKYASEAVS 454

Query: 112 RGIKIIIVGDGVEAHLSGVAAANSQILVIRVPLLSEDWSEDDVINSI-RMPSHVQVASVP 170
           RGIK+II G G  AHL G+ AA + + VI VP+        D ++SI +MP  V VA+V 
Sbjct: 455 RGIKVIIAGAGGAAHLPGMVAAMTPVPVIGVPVKGSTLDGVDSLHSIVQMPRGVPVATVA 514

Query: 171 RNNAKNAALYAVKVLGIADEDLLERIRKYV 200
            NN+ NA + AV++LGI + D ++++ +++
Sbjct: 515 INNSTNAGILAVRMLGIHNYDYVKKMEEFL 544

Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) (taxid: 284593)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 1

>sp|Q01930|PUR6_OGAME Phosphoribosylaminoimidazole carboxylase OS=Ogataea methanolica GN=ADE1 PE=3 SV=1

 Score =  107 bits (266), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 58/136 (42%), Positives = 82/136 (60%), Gaps = 1/136 (0%)

Query: 55  STDAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGI 114
           ++  P+VG+IM SD DLPVM+     L  F VP+E+ I+  H+  +    YA+ A +RG+
Sbjct: 398 TSSKPLVGVIMGSDSDLPVMSLGCNILKQFNVPFEVTIVSAHRTPQRMAKYAIDAPKRGL 457

Query: 115 KIIIVGDGVEAHLSGVAAANSQILVIRVPLLSEDWSEDDVINSI-RMPSHVQVASVPRNN 173
           K II G G  AHL G+ AA + + VI VP+        D ++SI +MP  + VA+V  NN
Sbjct: 458 KCIIAGAGGAAHLPGMVAAMTPLPVIGVPVKGSTLDGVDSLHSIVQMPRGIPVATVAINN 517

Query: 174 AKNAALYAVKVLGIAD 189
           A NAAL A+ +LG  D
Sbjct: 518 ATNAALLAITILGAGD 533

Pichia methanolica (taxid: 33166)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	202
13173434	623	phosphoribosylaminoimidazole carboxylase	0.925	0.300	0.416	3e-30
37983592	621	phosphoribosylaminoimidazole carboxylase	0.925	0.301	0.416	3e-30
357441429	641	Phosphoribosylaminoimidazole carboxylase	0.792	0.249	0.453	2e-29
14590237	177	phosphoribosylaminoimidazole carboxylase	0.727	0.830	0.466	3e-29
449442114	586	PREDICTED: phosphoribosylaminoimidazole	0.702	0.242	0.496	1e-28
449490248	586	PREDICTED: phosphoribosylaminoimidazole	0.702	0.242	0.496	1e-28
356535191	633	PREDICTED: phosphoribosylaminoimidazole	0.792	0.252	0.453	2e-28
410667200	164	phosphoribosylaminoimidazole carboxylase	0.717	0.884	0.493	2e-28
356576720	633	PREDICTED: phosphoribosylaminoimidazole	0.787	0.251	0.45	4e-28
297823643	645	hypothetical protein ARALYDRAFT_321477 [	0.722	0.226	0.462	2e-27

>gi|13173434|gb|AAK14408.1| phosphoribosylaminoimidazole carboxylase [Nicotiana tabacum]

 Score =  137 bits (344), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 82/197 (41%), Positives = 117/197 (59%), Gaps = 10/197 (5%)

Query: 7   RPNSVRTVSRGTIPVLASSNGSATSRRKDDSSVREPSTVFEEENPNGDSTDAPIVGIIME 66
           +P   R    G I ++  S G   ++ +          +  EE+ NG    AP VGIIM 
Sbjct: 413 KPEMRRQRKMGHITIVGPSMGIVEAQLR---------VILNEESVNGHPAVAPRVGIIMG 463

Query: 67  SDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAH 126
           SD DLPVM DAA+ L++F VP E+KI+  H+  +   SYALSA+ERGI++II G G  AH
Sbjct: 464 SDSDLPVMKDAAKILNEFDVPAEVKIVSAHRTPEMMFSYALSARERGIQVIIAGAGGAAH 523

Query: 127 LSGVAAANSQILVIRVPLLSEDW-SEDDVINSIRMPSHVQVASVPRNNAKNAALYAVKVL 185
           L G+ AA + + VI VP+ +      D +++ ++MP  V VA+V  NNA NA L AV++L
Sbjct: 524 LPGMVAAFTPLPVIGVPVRASTLDGLDSLLSIVQMPRGVPVATVAINNATNAGLLAVRLL 583

Query: 186 GIADEDLLERIRKYVEE 202
           GI+D  L  R+ +Y E+
Sbjct: 584 GISDIKLQARMAQYQED 600

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|37983592|gb|AAR06291.1| phosphoribosylaminoimidazole carboxylase, partial [Nicotiana tabacum]

 Score =  137 bits (344), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 82/197 (41%), Positives = 117/197 (59%), Gaps = 10/197 (5%)

Query: 7   RPNSVRTVSRGTIPVLASSNGSATSRRKDDSSVREPSTVFEEENPNGDSTDAPIVGIIME 66
           +P   R    G I ++  S G   ++ +          +  EE+ NG    AP VGIIM 
Sbjct: 411 KPEMRRQRKMGHITIVGPSMGIVEAQLR---------VILNEESVNGHPAVAPRVGIIMG 461

Query: 67  SDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAH 126
           SD DLPVM DAA+ L++F VP E+KI+  H+  +   SYALSA+ERGI++II G G  AH
Sbjct: 462 SDSDLPVMKDAAKILNEFDVPAEVKIVSAHRTPEMMFSYALSARERGIQVIIAGAGGAAH 521

Query: 127 LSGVAAANSQILVIRVPLLSEDW-SEDDVINSIRMPSHVQVASVPRNNAKNAALYAVKVL 185
           L G+ AA + + VI VP+ +      D +++ ++MP  V VA+V  NNA NA L AV++L
Sbjct: 522 LPGMVAAFTPLPVIGVPVRASTLDGLDSLLSIVQMPRGVPVATVAINNATNAGLLAVRLL 581

Query: 186 GIADEDLLERIRKYVEE 202
           GI+D  L  R+ +Y E+
Sbjct: 582 GISDIKLQARMAQYQED 598

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357441429|ref|XP_003590992.1| Phosphoribosylaminoimidazole carboxylase [Medicago truncatula] gi|355480040|gb|AES61243.1| Phosphoribosylaminoimidazole carboxylase [Medicago truncatula]

 Score =  134 bits (337), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 73/161 (45%), Positives = 104/161 (64%), Gaps = 1/161 (0%)

Query: 43  STVFEEENPNGDSTDAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEA 102
           +T+ E +  +  +  AP VGIIM SD DLPVM  AA  L  FGVP+E++I+  H+  +  
Sbjct: 456 ATILEGKTLDDKTAVAPRVGIIMGSDSDLPVMKCAAEILEKFGVPHEVEIVSAHRTPERM 515

Query: 103 LSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQILVIRVPLLSEDW-SEDDVINSIRMP 161
            SYA  A ERGIK+II G G  AHL G+ AA + + VI VP+        D +++ ++MP
Sbjct: 516 FSYASFASERGIKVIIAGAGGAAHLPGMVAAITPLPVIGVPVRGSSLDGVDSLLSIVQMP 575

Query: 162 SHVQVASVPRNNAKNAALYAVKVLGIADEDLLERIRKYVEE 202
             V VA++  NNA NA L AV++LG+ADE+LL R+ +Y+E+
Sbjct: 576 RGVPVATIAINNATNAGLLAVRILGVADENLLSRMSQYLED 616

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|14590237|ref|NP_142303.1| phosphoribosylaminoimidazole carboxylase catalytic subunit [Pyrococcus horikoshii OT3] gi|3914493|sp|O58058.1|PURE_PYRHO RecName: Full=N5-carboxyaminoimidazole ribonucleotide mutase; Short=N5-CAIR mutase; AltName: Full=5-(carboxyamino)imidazole ribonucleotide mutase gi|3256711|dbj|BAA29394.1| 177aa long hypothetical phosphoribosylaminoimidazole carboxylase catalytic subunit [Pyrococcus horikoshii OT3]

 Score =  134 bits (336), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 69/148 (46%), Positives = 106/148 (71%), Gaps = 1/148 (0%)

Query: 56  TDAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIK 115
           ++ P+VGIIM SD DLPVM +AAR L +FGVPYEI I+  H+  + A  YA  A+ERGI+
Sbjct: 7   SEKPLVGIIMGSDSDLPVMKEAARILEEFGVPYEITIISAHRTPERAYEYAKKAEERGIE 66

Query: 116 IIIVGDGVEAHLSGVAAANSQILVIRVPLLSEDWSE-DDVINSIRMPSHVQVASVPRNNA 174
           +II G G  AHL G+ A+ + + VI VP+ S+  +  D +++ ++MPS + VA+V  +NA
Sbjct: 67  VIIAGAGGAAHLPGIIASLTVLPVIGVPIKSKALNGLDSLLSIVQMPSGIPVATVAIDNA 126

Query: 175 KNAALYAVKVLGIADEDLLERIRKYVEE 202
           KNAAL A+++LGI   ++ E++R+Y+++
Sbjct: 127 KNAALLALRILGIKYPEIKEKLRRYMKD 154

Source: Pyrococcus horikoshii OT3

Species: Pyrococcus horikoshii

Genus: Pyrococcus

Family: Thermococcaceae

Order: Thermococcales

Class: Thermococci

Phylum: Euryarchaeota

Superkingdom: Archaea

>gi|449442114|ref|XP_004138827.1| PREDICTED: phosphoribosylaminoimidazole carboxylase, chloroplastic-like [Cucumis sativus]

 Score =  132 bits (331), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 71/143 (49%), Positives = 96/143 (67%), Gaps = 1/143 (0%)

Query: 61  VGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVG 120
           VGIIM SD D PVM DAA+ L  FGVPYEIKI+  H+      SYA SA+ERGI++II G
Sbjct: 424 VGIIMGSDSDFPVMRDAAKVLDTFGVPYEIKIVSAHRTPHWMFSYASSAQERGIQVIIAG 483

Query: 121 DGVEAHLSGVAAANSQILVIRVPLLSEDW-SEDDVINSIRMPSHVQVASVPRNNAKNAAL 179
            G  AHL G+ A+ + + VI VP+ +      D +++ ++MP  V VA+V  NNA NA L
Sbjct: 484 AGGAAHLPGMVASLTPLPVIGVPVRASTLDGLDSLLSIVQMPRGVPVATVAINNATNAGL 543

Query: 180 YAVKVLGIADEDLLERIRKYVEE 202
            AV++LG+AD DLL R+ ++ E+
Sbjct: 544 LAVRMLGVADADLLSRMSQFQED 566

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449490248|ref|XP_004158550.1| PREDICTED: phosphoribosylaminoimidazole carboxylase, chloroplastic-like [Cucumis sativus]

 Score =  132 bits (331), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 71/143 (49%), Positives = 96/143 (67%), Gaps = 1/143 (0%)

Query: 61  VGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVG 120
           VGIIM SD D PVM DAA+ L  FGVPYEIKI+  H+      SYA SA+ERGI++II G
Sbjct: 424 VGIIMGSDSDFPVMRDAAKVLDTFGVPYEIKIVSAHRTPHWMFSYASSAQERGIQVIIAG 483

Query: 121 DGVEAHLSGVAAANSQILVIRVPLLSEDW-SEDDVINSIRMPSHVQVASVPRNNAKNAAL 179
            G  AHL G+ A+ + + VI VP+ +      D +++ ++MP  V VA+V  NNA NA L
Sbjct: 484 AGGAAHLPGMVASLTPLPVIGVPVRASTLDGLDSLLSIVQMPRGVPVATVAINNATNAGL 543

Query: 180 YAVKVLGIADEDLLERIRKYVEE 202
            AV++LG+AD DLL R+ ++ E+
Sbjct: 544 LAVRMLGVADADLLSRMSQFQED 566

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356535191|ref|XP_003536132.1| PREDICTED: phosphoribosylaminoimidazole carboxylase, chloroplastic-like [Glycine max]

 Score =  131 bits (329), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 73/161 (45%), Positives = 104/161 (64%), Gaps = 1/161 (0%)

Query: 43  STVFEEENPNGDSTDAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEA 102
           + V E +  +  +  AP VGIIM SD DLPVM  AA  L  FGVP+E++I+  H+  +  
Sbjct: 449 AVVVEGKRLDDKTAVAPCVGIIMGSDSDLPVMKSAAEILEMFGVPHEVRIVSAHRTPELM 508

Query: 103 LSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQILVIRVPLLSEDWSE-DDVINSIRMP 161
            SYA SA ERGI++II G G  AHL G+ AA + + VI VP+ +      D +++ ++MP
Sbjct: 509 FSYASSAHERGIQVIIAGAGGAAHLPGMVAALTPLPVIGVPVRASTLDGIDSLLSIVQMP 568

Query: 162 SHVQVASVPRNNAKNAALYAVKVLGIADEDLLERIRKYVEE 202
             V VA+V  NNA NA L AV++LG+A++DLL R+ +Y E+
Sbjct: 569 RGVPVATVAVNNATNAGLLAVRMLGVANDDLLSRMSRYQED 609

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|410667200|ref|YP_006919571.1| phosphoribosylaminoimidazole carboxylase catalytic subunit PurE [Thermacetogenium phaeum DSM 12270] gi|409104947|gb|AFV11072.1| phosphoribosylaminoimidazole carboxylase catalytic subunit PurE [Thermacetogenium phaeum DSM 12270]

 Score =  130 bits (328), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 72/146 (49%), Positives = 97/146 (66%), Gaps = 1/146 (0%)

Query: 57  DAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKI 116
           + P+VGI++ SD DLPVM +AAR L DFGVPYE+ I   H++   A  YA +A+ERG+K+
Sbjct: 2   EKPLVGIVLGSDSDLPVMEEAARILDDFGVPYEMTIASAHRSPDLAAEYARTAEERGLKL 61

Query: 117 IIVGDGVEAHLSGVAAANSQILVIRVPLLSEDWSEDDVINSI-RMPSHVQVASVPRNNAK 175
           +I G G+ AHL GV AA + + VI VPL     +  D + SI +MP  V VA+V  N A+
Sbjct: 62  LIAGAGMAAHLPGVLAAYTCLPVIGVPLQGGALNGVDALYSIVQMPPGVPVAAVAINGAR 121

Query: 176 NAALYAVKVLGIADEDLLERIRKYVE 201
           NAAL AV++LG+ +  L ER R Y E
Sbjct: 122 NAALLAVQILGLGEPLLRERFRTYKE 147

Source: Thermacetogenium phaeum DSM 12270

Species: Thermacetogenium phaeum

Genus: Thermacetogenium

Family: Thermoanaerobacteraceae

Order: Thermoanaerobacterales

Class: Clostridia

Phylum: Firmicutes

Superkingdom: Bacteria

>gi|356576720|ref|XP_003556478.1| PREDICTED: phosphoribosylaminoimidazole carboxylase, chloroplastic-like [Glycine max]

 Score =  130 bits (326), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 72/160 (45%), Positives = 104/160 (65%), Gaps = 1/160 (0%)

Query: 43  STVFEEENPNGDSTDAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEA 102
           + + E +  +G +  AP VGIIM SD DLPVM  AA  L  FGVP+E++I+  H+  +  
Sbjct: 449 AVLVEGKELDGKTAVAPHVGIIMGSDSDLPVMKSAAEILEMFGVPHEVRIVSAHRTPELM 508

Query: 103 LSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQILVIRVPLLSEDWSE-DDVINSIRMP 161
            SYA SA ERGI++II G G  AHL G+ AA + + VI VP+ +      D +++ ++MP
Sbjct: 509 FSYASSAHERGIQVIIAGAGGAAHLPGMVAALTPLPVIGVPVRASTLDGIDSLLSIVQMP 568

Query: 162 SHVQVASVPRNNAKNAALYAVKVLGIADEDLLERIRKYVE 201
             V VA+V  NNA NA L AV++LG+A+++LL R+ +Y E
Sbjct: 569 RGVPVATVAVNNATNAGLLAVRMLGVANDNLLSRMSQYQE 608

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297823643|ref|XP_002879704.1| hypothetical protein ARALYDRAFT_321477 [Arabidopsis lyrata subsp. lyrata] gi|297325543|gb|EFH55963.1| hypothetical protein ARALYDRAFT_321477 [Arabidopsis lyrata subsp. lyrata]

 Score =  127 bits (320), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 68/147 (46%), Positives = 99/147 (67%), Gaps = 1/147 (0%)

Query: 57  DAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKI 116
           + P VGIIM SD DLPVM DAA+ L  FGV +E++I+  H+  +   +YA SA  RG+++
Sbjct: 476 ETPRVGIIMGSDTDLPVMKDAAKILDLFGVTHEVRIVSAHRTPEMMFTYAASAHSRGVQV 535

Query: 117 IIVGDGVEAHLSGVAAANSQILVIRVPLLSEDW-SEDDVINSIRMPSHVQVASVPRNNAK 175
           II G G  AHL G+ A+ + + VI VP+ +      D +++ ++MP  V VA+V  NNA 
Sbjct: 536 IIAGAGGAAHLPGMVASLTPLPVIGVPVRATRLDGVDSLLSIVQMPRGVPVATVAINNAT 595

Query: 176 NAALYAVKVLGIADEDLLERIRKYVEE 202
           NAAL AV++LGI+D DL+ R+R+Y E+
Sbjct: 596 NAALLAVRMLGISDTDLVSRMRQYQED 622

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	202
TAIR|locus:2040771	642	AT2G37690 [Arabidopsis thalian	0.722	0.227	0.462	4.2e-27
SGD|S000005654	571	ADE2 "Phosphoribosylaminoimida	0.970	0.343	0.381	4.6e-26
TAIR|locus:2051314	162	AT2G05140 "AT2G05140" [Arabido	0.683	0.851	0.453	3.6e-25
CGD|CAL0003241	568	ADE2 [Candida albicans (taxid:	0.876	0.311	0.411	4.3e-25
UNIPROTKB|Q92210	568	ADE2 "Phosphoribosylaminoimida	0.876	0.311	0.411	4.3e-25
UNIPROTKB|P96880	174	purE "N5-carboxyaminoimidazole	0.693	0.804	0.425	4.8e-23
POMBASE|SPCC1322.13	552	ade6 "phosphoribosylaminoimida	0.732	0.268	0.395	2.7e-22
TIGR_CMR|GSU_0611	169	GSU_0611 "phosphoribosylaminoi	0.698	0.834	0.409	5.5e-22
TIGR_CMR|CHY_1069	162	CHY_1069 "phosphoribosylaminoi	0.702	0.876	0.373	1.1e-21
TIGR_CMR|CPS_0026	160	CPS_0026 "phosphoribosylaminoi	0.688	0.868	0.373	1.2e-19

TAIR|locus:2040771 AT2G37690 [Arabidopsis thaliana (taxid:3702)]

 Score = 312 (114.9 bits), Expect = 4.2e-27, P = 4.2e-27
 Identities = 68/147 (46%), Positives = 98/147 (66%)

Query:    57 DAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKI 116
             + P V IIM SD DLPVM DAA+ L  FGV +E+KI+  H+  +   +YA SA  RG+++
Sbjct:   473 ETPRVAIIMGSDTDLPVMKDAAKILDLFGVTHEVKIVSAHRTPEMMYTYATSAHSRGVQV 532

Query:   117 IIVGDGVEAHLSGVAAANSQILVIRVPLLSEDWSE-DDVINSIRMPSHVQVASVPRNNAK 175
             II G G  AHL G+ A+ + + VI VP+ +      D +++ ++MP  V VA+V  NNA 
Sbjct:   533 IIAGAGGAAHLPGMVASLTPLPVIGVPVRATRLDGVDSLLSIVQMPRGVPVATVAINNAT 592

Query:   176 NAALYAVKVLGIADEDLLERIRKYVEE 202
             NAAL AV++LGI+D DL+ R+R+Y E+
Sbjct:   593 NAALLAVRMLGISDTDLVSRMRQYQED 619

GO:0004638 "phosphoribosylaminoimidazole carboxylase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0006189 "'de novo' IMP biosynthetic process" evidence=IEA;ISS

GO:0016874 "ligase activity" evidence=IEA

GO:0034023 "5-(carboxyamino)imidazole ribonucleotide mutase activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

GO:0009555 "pollen development" evidence=IMP

GO:0009570 "chloroplast stroma" evidence=IDA

SGD|S000005654 ADE2 "Phosphoribosylaminoimidazole carboxylase" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 301 (111.0 bits), Expect = 4.6e-26, P = 4.6e-26
 Identities = 77/202 (38%), Positives = 113/202 (55%)

Query:     1 MFNNSKRPNSVRTVSRGTIPVLASSNGSATSRRKDDSSVRE-PSTVFEEENPNGDSTDAP 59
             ++    RPN  R V  G I ++ASS      R    +   + P  +   +  + ++   P
Sbjct:   348 LYGKESRPN--RKV--GHINIIASSMAECEQRLNYITGRTDIPIKISVAQKLDLEAMVKP 403

Query:    60 IVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIV 119
             +VGIIM SD DLPVM+ A   L DFGVP+E+ I+  H+      +YA+SA +RGIK II 
Sbjct:   404 LVGIIMGSDSDLPVMSAACAVLKDFGVPFEVTIVSAHRTPHRMSAYAISASKRGIKTIIA 463

Query:   120 GDGVEAHLSGVAAANSQILVIRVPLLSEDWSEDDVINSI-RMPSHVQVASVPRNNAKNAA 178
             G G  AHL G+ AA + + VI VP+        D ++SI +MP  V VA+V  NN+ NAA
Sbjct:   464 GAGGAAHLPGMVAAMTPLPVIGVPVKGSCLDGVDSLHSIVQMPRGVPVATVAINNSTNAA 523

Query:   179 LYAVKVLGIADEDLLERIRKYV 200
             L AV++LG  D     ++ +++
Sbjct:   524 LLAVRLLGAYDSSYTTKMEQFL 545

GO:0006189 "'de novo' IMP biosynthetic process" evidence=IEA;TAS

GO:0006164 "purine nucleotide biosynthetic process" evidence=IEA;TAS

GO:0005524 "ATP binding" evidence=IEA

GO:0034023 "5-(carboxyamino)imidazole ribonucleotide mutase activity" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0004638 "phosphoribosylaminoimidazole carboxylase activity" evidence=IEA;IMP

GO:0046872 "metal ion binding" evidence=IEA

GO:0006144 "purine nucleobase metabolic process" evidence=IMP;TAS

GO:0005737 "cytoplasm" evidence=IDA

GO:0016829 "lyase activity" evidence=IEA

GO:0016831 "carboxy-lyase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

TAIR|locus:2051314 AT2G05140 "AT2G05140" [Arabidopsis thaliana (taxid:3702)]

 Score = 286 (105.7 bits), Expect = 3.6e-25, P = 3.6e-25
 Identities = 63/139 (45%), Positives = 92/139 (66%)

Query:    65 MESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVE 124
             M SD DL VM DAA+ L  FGV +E+KI+  H+  +   +YA SA  RG+++II G G  
Sbjct:     1 MGSDTDLLVMKDAAKILDMFGVTHEVKIVSAHRTPEMMYTYATSAHSRGVQVIIAGAGGA 60

Query:   125 AHLSGVAAANSQILVIRVPLLSEDWSE-DDVINSIRMPSHVQVASVPRNNAKNAALYAVK 183
             AHL G+ A+ + + VI VP+ +      D +++ ++MP  V VA+V  NNA NAAL AV+
Sbjct:    61 AHLPGMVASLTPLPVIGVPVQATRLDGVDSLLSIVQMPRGVPVATVAINNATNAALLAVR 120

Query:   184 VLGIADEDLLERIRKYVEE 202
             +LGI+D DL+ R+R+Y E+
Sbjct:   121 MLGISDNDLVSRMRQYQED 139

GO:0004638 "phosphoribosylaminoimidazole carboxylase activity" evidence=ISS

GO:0006189 "'de novo' IMP biosynthetic process" evidence=IEA;ISS

GO:0009320 "phosphoribosylaminoimidazole carboxylase complex" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0034023 "5-(carboxyamino)imidazole ribonucleotide mutase activity" evidence=IEA

CGD|CAL0003241 ADE2 [Candida albicans (taxid:5476)]

 Score = 292 (107.8 bits), Expect = 4.3e-25, P = 4.3e-25
 Identities = 77/187 (41%), Positives = 106/187 (56%)

Query:    17 GTIPVLASSNGSATSRRKDDSSVREPSTVFEEENPNGDSTD--APIVGIIMESDLDLPVM 74
             G I V+ SS   A SR    S +   +T    E P   +TD  +P+VGIIM SD DLPVM
Sbjct:   360 GHINVVTSSMQDAESRL---SYILGDTT----EIPKSLATDKESPLVGIIMGSDSDLPVM 412

Query:    75 NDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAAN 134
                AR L  FGVP+E+ I+  H+       YA+ A +RG+K II G G  AHL G+ AA 
Sbjct:   413 AVGARILKQFGVPFELTIVSAHRTPHRMSEYAIEAPKRGLKCIIAGAGGAAHLPGMVAAM 472

Query:   135 SQILVIRVPLLSEDWSEDDVINSI-RMPSHVQVASVPRNNAKNAALYAVKVLGIADEDLL 193
             + + VI VP+        D ++SI +MP  + VA+V  NN+ NAAL A+++LG  D   L
Sbjct:   473 TPLPVIGVPVKGSTLDGVDSLHSIVQMPRGIPVATVAINNSTNAALLAIRILGAYDSKWL 532

Query:   194 ERIRKYV 200
               + +Y+
Sbjct:   533 TEMNQYM 539

GO:0046084 "adenine biosynthetic process" evidence=IGI;IMP

GO:0004638 "phosphoribosylaminoimidazole carboxylase activity" evidence=IGI;ISS;IMP;NAS

GO:0006164 "purine nucleotide biosynthetic process" evidence=ISS

GO:0009405 "pathogenesis" evidence=IMP

GO:0005829 "cytosol" evidence=IEA

GO:0034023 "5-(carboxyamino)imidazole ribonucleotide mutase activity" evidence=IEA

UNIPROTKB|Q92210 ADE2 "Phosphoribosylaminoimidazole carboxylase" [Candida albicans SC5314 (taxid:237561)]

 Score = 292 (107.8 bits), Expect = 4.3e-25, P = 4.3e-25
 Identities = 77/187 (41%), Positives = 106/187 (56%)

Query:    17 GTIPVLASSNGSATSRRKDDSSVREPSTVFEEENPNGDSTD--APIVGIIMESDLDLPVM 74
             G I V+ SS   A SR    S +   +T    E P   +TD  +P+VGIIM SD DLPVM
Sbjct:   360 GHINVVTSSMQDAESRL---SYILGDTT----EIPKSLATDKESPLVGIIMGSDSDLPVM 412

Query:    75 NDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAAN 134
                AR L  FGVP+E+ I+  H+       YA+ A +RG+K II G G  AHL G+ AA 
Sbjct:   413 AVGARILKQFGVPFELTIVSAHRTPHRMSEYAIEAPKRGLKCIIAGAGGAAHLPGMVAAM 472

Query:   135 SQILVIRVPLLSEDWSEDDVINSI-RMPSHVQVASVPRNNAKNAALYAVKVLGIADEDLL 193
             + + VI VP+        D ++SI +MP  + VA+V  NN+ NAAL A+++LG  D   L
Sbjct:   473 TPLPVIGVPVKGSTLDGVDSLHSIVQMPRGIPVATVAINNSTNAALLAIRILGAYDSKWL 532

Query:   194 ERIRKYV 200
               + +Y+
Sbjct:   533 TEMNQYM 539

GO:0004638 "phosphoribosylaminoimidazole carboxylase activity" evidence=IGI;ISS;NAS;IMP

GO:0006164 "purine nucleotide biosynthetic process" evidence=ISS

GO:0009405 "pathogenesis" evidence=IMP

GO:0046084 "adenine biosynthetic process" evidence=IGI;IMP

UNIPROTKB|P96880 purE "N5-carboxyaminoimidazole ribonucleotide mutase" [Mycobacterium tuberculosis (taxid:1773)]

 Score = 266 (98.7 bits), Expect = 4.8e-23, P = 4.8e-23
 Identities = 60/141 (42%), Positives = 88/141 (62%)

Query:    57 DAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKI 116
             + P VG+IM SD D PVM DAA  L++F +P E++++  H+  +   SYA  A ERG+++
Sbjct:     6 ERPRVGVIMGSDSDWPVMADAAAALAEFDIPAEVRVVSAHRTPEAMFSYARGAAERGLEV 65

Query:   117 IIVGDGVEAHLSGVAAANSQILVIRVPL-LSEDWSEDDVINSIRMPSHVQVASVPRNNAK 175
             II G G  AHL G+ AA + + VI VP+ L      D +++ ++MP+ V VA+V    A 
Sbjct:    66 IIAGAGGAAHLPGMVAAATPLPVIGVPVPLGRLDGLDSLLSIVQMPAGVPVATVSIGGAG 125

Query:   176 NAALYAVKVLGIADEDLLERI 196
             NA L AV++LG A+  L  RI
Sbjct:   126 NAGLLAVRMLGAANPQLRARI 146

GO:0040007 "growth" evidence=IMP

POMBASE|SPCC1322.13 ade6 "phosphoribosylaminoimidazole carboxylase Ade6" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 266 (98.7 bits), Expect = 2.7e-22, P = 2.7e-22
 Identities = 59/149 (39%), Positives = 89/149 (59%)

Query:    54 DSTDAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERG 113
             D  ++P+VGIIM SD DL  M DAA  L +F VPYE+ I+  H+     ++YA +A  RG
Sbjct:   381 DPVESPVVGIIMGSDSDLSKMKDAAVILDEFKVPYELTIVSAHRTPDRMVTYARTAASRG 440

Query:   114 IKIIIVGDGVEAHLSGVAAANSQILVIRVPLLSEDWSEDDVINSI-RMPSHVQVASVPRN 172
             +++II G G  AHL G+ AA + + VI VP+        D ++SI +MP  V VA+V  N
Sbjct:   441 LRVIIAGAGGAAHLPGMVAAMTPLPVIGVPVKGSTLDGVDSLHSIVQMPRGVPVATVAIN 500

Query:   173 NAKNAALYAVKVLGIADEDLLERIRKYVE 201
             N++NA + A ++L      LL  +  +++
Sbjct:   501 NSQNAGILACRILATFQPSLLAAMESFMD 529

GO:0004638 "phosphoribosylaminoimidazole carboxylase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISO

GO:0005829 "cytosol" evidence=IDA

GO:0006189 "'de novo' IMP biosynthetic process" evidence=ISO

GO:0009113 "purine nucleobase biosynthetic process" evidence=ISO

GO:0034023 "5-(carboxyamino)imidazole ribonucleotide mutase activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0046938 "phytochelatin biosynthetic process" evidence=IMP

GO:0070814 "hydrogen sulfide biosynthetic process" evidence=IMP

GO:0071585 "detoxification of cadmium ion" evidence=IMP

TIGR_CMR|GSU_0611 GSU_0611 "phosphoribosylaminoimidazole carboxylase, catalytic subunit" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 256 (95.2 bits), Expect = 5.5e-22, P = 5.5e-22
 Identities = 59/144 (40%), Positives = 90/144 (62%)

Query:    59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIII 118
             P V IIM SD D+PVM +AA+ L  FGV +E+++   H++ K+A   A +A  RG+K II
Sbjct:     4 PQVLIIMGSDSDVPVMEEAAKALDAFGVTWEMRVASAHRSPKKAADLASNAAARGVKAII 63

Query:   119 VGDGVEAHLSGVAAANSQILVIRVPLLSEDWSEDDVINS-IRMPSHVQVAS--VPRNNAK 175
              G GV AHL+GV AA + + VI VP+     +  D + S ++MP  + VA+  + +  AK
Sbjct:    64 AGAGVAAHLAGVLAAETILPVIAVPMPGGALNGVDALYSMVQMPGGIPVATMAIGKAGAK 123

Query:   176 NAALYAVKVLGIADEDLLERIRKY 199
             NA L+AV++L + D  +  R+ +Y
Sbjct:   124 NAGLFAVQILALGDAAMAGRLVEY 147

GO:0004638 "phosphoribosylaminoimidazole carboxylase activity" evidence=ISS

GO:0009152 "purine ribonucleotide biosynthetic process" evidence=ISS

TIGR_CMR|CHY_1069 CHY_1069 "phosphoribosylaminoimidazole carboxylase, catalytic subunit" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 253 (94.1 bits), Expect = 1.1e-21, P = 1.1e-21
 Identities = 53/142 (37%), Positives = 88/142 (61%)

Query:    61 VGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVG 120
             V ++M SD D  ++  A   L +FGV YE+K+   H+   +AL++A +A+E+G  +II  
Sbjct:     4 VAVVMGSDSDWEIVKKAVEVLKEFGVEYEVKVASAHRTPDKALNFARTAREKGFGVIIAA 63

Query:   121 DGVEAHLSGVAAANSQILVIRVPLLSEDWSEDDVINSIRMPSHVQVASVPRNNAKNAALY 180
              G+ AHL GV AA + + VI +P+ +     D +++  +MP  V VA+V  N AKNA L 
Sbjct:    64 AGMAAHLPGVLAAVTTLPVIGLPIKASIEGIDSLLSIAQMPPGVPVATVGINAAKNAGLL 123

Query:   181 AVKVLGIADEDLLERIRKYVEE 202
             AV++L + D++L  +++ Y E+
Sbjct:   124 AVQILSLNDKNLAGKLQAYKEK 145

GO:0004638 "phosphoribosylaminoimidazole carboxylase activity" evidence=ISS

GO:0009152 "purine ribonucleotide biosynthetic process" evidence=ISS

TIGR_CMR|CPS_0026 CPS_0026 "phosphoribosylaminoimidazole carboxylase, catalytic subunit" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 234 (87.4 bits), Expect = 1.2e-19, P = 1.2e-19
 Identities = 53/142 (37%), Positives = 83/142 (58%)

Query:    61 VGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVG 120
             VGIIM S  D P M   A  L   GV YE K++  H+       YA SAK+RGIK+II G
Sbjct:     3 VGIIMGSKSDWPTMQHTAEMLDSLGVQYETKVVSAHRTPHLLAEYAESAKDRGIKVIIAG 62

Query:   121 DGVEAHLSGVAAANSQILVIRVPLLSEDWS-EDDVINSIRMPSHVQVASVPRNNA--KNA 177
              G  AHL G+AAA + + V+ VP+ S+  + +D +++ ++MP  + V ++   NA   NA
Sbjct:    63 AGGAAHLPGMAAAYTSLPVLGVPVQSKALNGQDSLLSIVQMPKGIAVGTLAIGNAGAANA 122

Query:   178 ALYAVKVLGIADEDLLERIRKY 199
              L A +++G  + ++ + I ++
Sbjct:   123 GLLAAQIIGTHNTEIQQNIEEF 144

GO:0004638 "phosphoribosylaminoimidazole carboxylase activity" evidence=ISS

GO:0009152 "purine ribonucleotide biosynthetic process" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	5.4.99.18	0.824
3rd Layer	5.4.99	0.766

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	purE	phosphoribosylaminoimidazole carboxylase catalytic subunit; This subunit can alone transform AIR to CAIR, but in association with purK, which possesses an ATPase activity, an enzyme complex is produced which is capable of converting AIR to CAIR efficiently under physiological condition (By similarity) (177 aa)
		(Pyrococcus horikoshii)
Predicted Functional Partners:
	purC	phosphoribosylaminoimidazole-succinocarboxamide synthase (238 aa)	•	•		•		•	•		0.999
	purD	phosphoribosylamine--glycine ligase (438 aa)	•	•	•	•	•	•	•		0.999
	purT	phosphoribosylglycinamide formyltransferase 2; Catalyzes two reactions- the first one is the pr [...] (433 aa)	•	•		•		•	•		0.999
	purF	amidophosphoribosyltransferase (449 aa)	•		•	•	•	•	•		0.998
	purM	phosphoribosylaminoimidazole synthetase (334 aa)	•		•	•	•	•	•		0.997
	purB	adenylosuccinate lyase (450 aa)	•			•	•	•	•		0.996
	purQ	phosphoribosylformylglycinamidine synthase I (227 aa)	•			•		•	•		0.982
	glnA	glutamine synthetase (443 aa)	•						•		0.976
	purL	phosphoribosylformylglycinamidine synthase II (705 aa)	•					•	•		0.964
	purA	adenylosuccinate synthetase; Plays an important role in the de novo pathway of purine nucleotid [...] (339 aa)	•			•			•		0.961

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	202
TIGR01162	156	TIGR01162, purE, phosphoribosylaminoimidazole carb	6e-43
pfam00731	150	pfam00731, AIRC, AIR carboxylase	1e-42
COG0041	162	COG0041, PurE, Phosphoribosylcarboxyaminoimidazole	1e-41
PLN02948	577	PLN02948, PLN02948, phosphoribosylaminoimidazole c	8e-41
smart01001	152	smart01001, AIRC, AIR carboxylase	3e-38
COG1691	254	COG1691, COG1691, NCAIR mutase (PurE)-related prot	0.002

>gnl|CDD|130230 TIGR01162, purE, phosphoribosylaminoimidazole carboxylase, PurE protein

 Score =  140 bits (356), Expect = 6e-43
 Identities = 66/143 (46%), Positives = 93/143 (65%), Gaps = 1/143 (0%)

Query: 61  VGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVG 120
           VGIIM SD DLP M  AA  L +FG+PYE++++  H+  +  L YA  A+ERGIK+II G
Sbjct: 1   VGIIMGSDSDLPTMKKAADILEEFGIPYELRVVSAHRTPELMLEYAKEAEERGIKVIIAG 60

Query: 121 DGVEAHLSGVAAANSQILVIRVPL-LSEDWSEDDVINSIRMPSHVQVASVPRNNAKNAAL 179
            G  AHL G+ AA + + VI VP+        D +++ ++MPS V VA+V   NA NAAL
Sbjct: 61  AGGAAHLPGMVAALTPLPVIGVPVPSKALSGLDSLLSIVQMPSGVPVATVAIGNAGNAAL 120

Query: 180 YAVKVLGIADEDLLERIRKYVEE 202
            A ++LGI D +L E++++Y E 
Sbjct: 121 LAAQILGIKDPELAEKLKEYREN 143

Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase [Purines, pyrimidines, nucleosides, and nucleotides, Purine ribonucleotide biosynthesis]. Length = 156

>gnl|CDD|144362 pfam00731, AIRC, AIR carboxylase

 Score =  139 bits (354), Expect = 1e-42
 Identities = 64/145 (44%), Positives = 93/145 (64%), Gaps = 1/145 (0%)

Query: 59  PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIII 118
           P VGIIM SD DLP M  AA+ L +FG+PYE++++  H+  +    YA  A+ RGIK+II
Sbjct: 1   PKVGIIMGSDSDLPTMEKAAKVLKEFGIPYEVRVVSAHRTPERLFEYAKEAEARGIKVII 60

Query: 119 VGDGVEAHLSGVAAANSQILVIRVPLLSEDWS-EDDVINSIRMPSHVQVASVPRNNAKNA 177
            G G  AHL G+ AA + + VI VP+ S+     D +++ ++MPS + VA+V    AKNA
Sbjct: 61  AGAGGAAHLPGMVAALTTLPVIGVPVKSKALGGLDSLLSIVQMPSGIPVATVAIGGAKNA 120

Query: 178 ALYAVKVLGIADEDLLERIRKYVEE 202
           AL A ++L + D +L E++  Y EE
Sbjct: 121 ALLAAQILALKDPELAEKLEAYREE 145

Members of this family catalyze the decarboxylation of 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR). This family catalyze the sixth step of de novo purine biosynthesis. Some members of this family contain two copies of this domain. Length = 150

>gnl|CDD|223119 COG0041, PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]

 Score =  137 bits (348), Expect = 1e-41
 Identities = 62/147 (42%), Positives = 92/147 (62%), Gaps = 1/147 (0%)

Query: 57  DAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKI 116
             P VGIIM S  D   M  AA  L +FGVPYE++++  H+  ++   YA  A+ERG+K+
Sbjct: 1   MPPKVGIIMGSKSDWDTMKKAAEILEEFGVPYEVRVVSAHRTPEKMFEYAEEAEERGVKV 60

Query: 117 IIVGDGVEAHLSGVAAANSQILVIRVPLLSEDWS-EDDVINSIRMPSHVQVASVPRNNAK 175
           II G G  AHL G+ AA + + VI VP+ S+  S  D +++ ++MP+ V VA+V   NA 
Sbjct: 61  IIAGAGGAAHLPGMVAAKTPLPVIGVPVQSKALSGLDSLLSIVQMPAGVPVATVAIGNAA 120

Query: 176 NAALYAVKVLGIADEDLLERIRKYVEE 202
           NAAL A ++L I D +L E++ ++ E 
Sbjct: 121 NAALLAAQILAIKDPELAEKLAEFREA 147

Length = 162

>gnl|CDD|178534 PLN02948, PLN02948, phosphoribosylaminoimidazole carboxylase

 Score =  145 bits (367), Expect = 8e-41
 Identities = 74/189 (39%), Positives = 103/189 (54%), Gaps = 12/189 (6%)

Query: 17  GTIPVLASSNGSATSRRKD--DSSVREPSTVFEEENPNGDSTDAPIVGIIMESDLDLPVM 74
           G I V+  S     +R          +P  + +           P+VGIIM SD DLP M
Sbjct: 376 GHITVVGPSAAEVEARLDQLLAEESADPDALPK---------GTPLVGIIMGSDSDLPTM 426

Query: 75  NDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAAN 134
            DAA  L  FGVPYE+ I+  H+  +   SYA SA  RG+++II G G  AHL G+ A+ 
Sbjct: 427 KDAAEILDSFGVPYEVTIVSAHRTPERMFSYARSAHSRGLQVIIAGAGGAAHLPGMVASM 486

Query: 135 SQILVIRVPLLSEDWSEDDVINSI-RMPSHVQVASVPRNNAKNAALYAVKVLGIADEDLL 193
           + + VI VP+ +      D + SI +MP  V VA+V   NA NA L AV++LG +D DLL
Sbjct: 487 TPLPVIGVPVKTSHLDGLDSLLSIVQMPRGVPVATVAIGNATNAGLLAVRMLGASDPDLL 546

Query: 194 ERIRKYVEE 202
           +++  Y E+
Sbjct: 547 DKMEAYQED 555

Length = 577

>gnl|CDD|214965 smart01001, AIRC, AIR carboxylase

 Score =  128 bits (325), Expect = 3e-38
 Identities = 61/144 (42%), Positives = 90/144 (62%), Gaps = 3/144 (2%)

Query: 59  PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIII 118
           P+VGIIM S  DLPVM +AA+TL +FG+PYE+ +   H+       YA  A++RGIK+II
Sbjct: 1   PLVGIIMGSTSDLPVMEEAAKTLEEFGIPYEVGVASAHRTPDRLFEYAKEAEDRGIKVII 60

Query: 119 VGDGVEAHLSGVAAANSQILVIRVPLLSEDWS-EDDVINSIRMPSHVQVA--SVPRNNAK 175
            G G  AHL GV AA + + VI VP+ S      D +++ ++MPS + VA  ++  + A 
Sbjct: 61  AGAGGAAHLPGVVAALTTLPVIGVPVSSGYLGGLDSLLSIVQMPSGIPVATVAIGIDGAF 120

Query: 176 NAALYAVKVLGIADEDLLERIRKY 199
           NAAL A ++L + D +L  ++  Y
Sbjct: 121 NAALLAAQILALNDPELAAKLAAY 144

Members of this family catalyse the decarboxylation of 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR). This family catalyse the sixth step of de novo purine biosynthesis. Some members of this family contain two copies of this domain. Length = 152

>gnl|CDD|224605 COG1691, COG1691, NCAIR mutase (PurE)-related proteins [General function prediction only]

 Score = 37.8 bits (88), Expect = 0.002
 Identities = 29/98 (29%), Positives = 43/98 (43%), Gaps = 8/98 (8%)

Query: 50  NPNGDSTDAPIVGIIMESDLDLPVMNDAARTLSDFGVP----YEIKILPPHQNCKEALSY 105
           +PN +      VG++     DLPV  +AA T  + GV     Y++ +   H+     LS 
Sbjct: 109 DPNYEPKKGGKVGVLSAGTSDLPVAEEAAVTAEELGVEVQKVYDVGVAGIHR----LLSA 164

Query: 106 ALSAKERGIKIIIVGDGVEAHLSGVAAANSQILVIRVP 143
               K     ++IV  G+E  L  V A    + VI VP
Sbjct: 165 LKRLKIEDADVLIVVAGMEGALPSVVAGLVDVPVIAVP 202

Length = 254

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	202
COG0041	162	PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) m	100.0
TIGR01162	156	purE phosphoribosylaminoimidazole carboxylase, Pur	100.0
PF00731	150	AIRC: AIR carboxylase; InterPro: IPR000031 Phospho	100.0
PLN02948	577	phosphoribosylaminoimidazole carboxylase	100.0
COG1691	254	NCAIR mutase (PurE)-related proteins [General func	100.0
KOG2835	373	consensus Phosphoribosylamidoimidazole-succinocarb	99.95
cd08170	351	GlyDH Glycerol dehydrogenases (GlyDH) catalyzes ox	97.49
cd08550	349	GlyDH-like Glycerol_dehydrogenase-like. Families o	97.47
cd08171	345	GlyDH-like2 Glycerol dehydrogenase-like. Glycerol	97.23
PRK00843	350	egsA NAD(P)-dependent glycerol-1-phosphate dehydro	97.23
cd08175	348	G1PDH Glycerol-1-phosphate dehydrogenase (G1PDH) c	97.22
PRK09423	366	gldA glycerol dehydrogenase; Provisional	97.21
cd08551	370	Fe-ADH iron-containing alcohol dehydrogenases (Fe-	97.19
cd08195	345	DHQS Dehydroquinate synthase (DHQS) catalyzes the	97.12
TIGR01357	344	aroB 3-dehydroquinate synthase. This model represe	97.08
cd08549	332	G1PDH_related Glycerol-1-phosphate_dehydrogenase a	97.01
cd08173	339	Gro1PDH Sn-glycerol-1-phosphate dehydrogenase (Gro	96.98
cd07766	332	DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like)	96.93
cd08185	380	Fe-ADH1 Iron-containing alcohol dehydrogenases-lik	96.91
cd08183	374	Fe-ADH2 Iron-containing alcohol dehydrogenases-lik	96.87
PRK00002	358	aroB 3-dehydroquinate synthase; Reviewed	96.79
cd08199	354	EEVS 2-epi-5-epi-valiolone synthase (EEVS). 2-epi-	96.77
cd08182	367	HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) c	96.77
cd08197	355	DOIS 2-deoxy-scyllo-inosose synthase (DOIS) cataly	96.74
cd08174	331	G1PDH-like Glycerol-1-phosphate dehydrogenase-like	96.65
cd08193	376	HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyze	96.64
cd08194	375	Fe-ADH6 Iron-containing alcohol dehydrogenases-lik	96.63
cd08186	383	Fe-ADH8 Iron-containing alcohol dehydrogenase. Typ	96.53
cd08176	377	LPO Lactadehyde:propanediol oxidoreductase (LPO) c	96.53
cd08187	382	BDH Butanol dehydrogenase catalyzes the conversion	96.51
cd08189	374	Fe-ADH5 Iron-containing alcohol dehydrogenases-lik	96.4
cd08181	357	PPD-like 1,3-propanediol dehydrogenase-like (PPD).	96.38
TIGR02638	379	lactal_redase lactaldehyde reductase. This clade o	96.34
cd08192	370	Fe-ADH7 Iron-containing alcohol dehydrogenases-lik	96.32
PLN02834	433	3-dehydroquinate synthase	96.29
cd08178	398	AAD_C C-terminal alcohol dehydrogenase domain of t	96.28
PF00465	366	Fe-ADH: Iron-containing alcohol dehydrogenase ; In	96.27
cd08172	347	GlyDH-like1 Glycerol dehydrogenases-like. Glycerol	96.18
cd08177	337	MAR Maleylacetate reductase is involved in many ar	96.1
cd08188	377	Fe-ADH4 Iron-containing alcohol dehydrogenases-lik	96.06
PRK15454	395	ethanol dehydrogenase EutG; Provisional	96.05
cd08179	375	NADPH_BDH NADPH-dependent butanol dehydrogenase in	95.98
cd08169	344	DHQ-like Dehydroquinate synthase-like which includ	95.96
cd08191	386	HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyz	95.93
PRK10586	362	putative oxidoreductase; Provisional	95.81
PRK10624	382	L-1,2-propanediol oxidoreductase; Provisional	95.8
PRK09860	383	putative alcohol dehydrogenase; Provisional	95.79
cd08180	332	PDD 1,3-propanediol dehydrogenase (PPD) catalyzes	95.73
cd08190	414	HOT Hydroxyacid-oxoacid transhydrogenase (HOT) inv	95.56
PRK06203	389	aroB 3-dehydroquinate synthase; Reviewed	95.31
KOG2835	373	consensus Phosphoribosylamidoimidazole-succinocarb	95.19
PF13685	250	Fe-ADH_2: Iron-containing alcohol dehydrogenase; P	95.18
PRK14021	542	bifunctional shikimate kinase/3-dehydroquinate syn	95.06
cd08198	369	DHQS-like2 Dehydroquinate synthase (DHQS)-like. DH	94.98
PRK15138	387	aldehyde reductase; Provisional	94.88
cd08196	346	DHQS-like1 Dehydroquinate synthase (DHQS)-like. DH	94.84
PRK15424	538	propionate catabolism operon regulatory protein Pr	94.8
COG0371	360	GldA Glycerol dehydrogenase and related enzymes [E	94.51
PRK13805	862	bifunctional acetaldehyde-CoA/alcohol dehydrogenas	93.83
cd08184	347	Fe-ADH3 Iron-containing alcohol dehydrogenases-lik	93.7
COG1454	377	EutG Alcohol dehydrogenase, class IV [Energy produ	93.56
COG2515	323	Acd 1-aminocyclopropane-1-carboxylate deaminase [A	93.18
cd03028	90	GRX_PICOT_like Glutaredoxin (GRX) family, PKC-inte	93.09
PF04392	294	ABC_sub_bind: ABC transporter substrate binding pr	93.08
PF06506	176	PrpR_N: Propionate catabolism activator; InterPro:	92.95
PRK13055	334	putative lipid kinase; Reviewed	92.74
PRK10653	295	D-ribose transporter subunit RbsB; Provisional	92.55
cd06283	267	PBP1_RegR_EndR_KdgR_like Ligand-binding domain of	92.53
TIGR03405	355	Phn_Fe-ADH phosphonate metabolism-associated iron-	92.38
cd03786	363	GT1_UDP-GlcNAc_2-Epimerase Bacterial members of th	92.08
PF13407	257	Peripla_BP_4: Periplasmic binding protein domain;	91.91
TIGR03702	293	lip_kinase_YegS lipid kinase YegS. Members of this	91.71
TIGR02329	526	propionate_PrpR propionate catabolism operon regul	91.68
PRK01372	304	ddl D-alanine--D-alanine ligase; Reviewed	91.65
cd01539	303	PBP1_GGBP Periplasmic glucose/galactose-binding pr	91.62
PRK11914	306	diacylglycerol kinase; Reviewed	91.55
cd01391	269	Periplasmic_Binding_Protein_Type_1 Type 1 periplas	91.38
TIGR02417	327	fruct_sucro_rep D-fructose-responsive transcriptio	91.33
TIGR00365	97	monothiol glutaredoxin, Grx4 family. The gene for	91.23
cd06311	274	PBP1_ABC_sugar_binding_like_3 Periplasmic sugar-bi	91.11
TIGR00147	293	lipid kinase, YegS/Rv2252/BmrU family. The E. coli	90.99
cd06280	263	PBP1_LacI_like_4 Ligand-binding domain of uncharac	90.49
COG3199	355	Predicted inorganic polyphosphate/ATP-NAD kinase [	90.15
cd06275	269	PBP1_PurR Ligand-binding domain of purine represso	90.08
cd01537	264	PBP1_Repressors_Sugar_Binding_like Ligand-binding	89.8
cd06318	282	PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-bi	89.53
cd01575	268	PBP1_GntR Ligand-binding domain of DNA transcripti	89.43
PRK13337	304	putative lipid kinase; Reviewed	89.34
PRK00861	300	putative lipid kinase; Reviewed	89.33
cd06298	268	PBP1_CcpA_like Ligand-binding domain of the catabo	89.3
cd06305	273	PBP1_methylthioribose_binding_like Methylthioribos	89.28
cd06273	268	PBP1_GntR_like_1 This group includes the ligand-bi	89.22
cd06323	268	PBP1_ribose_binding Periplasmic sugar-binding doma	89.13
TIGR02189	99	GlrX-like_plant Glutaredoxin-like family. This fam	89.0
cd06296	270	PBP1_CatR_like Ligand-binding domain of a LacI-lik	88.89
cd01988	132	Na_H_Antiporter_C The C-terminal domain of a subfa	88.78
cd06321	271	PBP1_ABC_sugar_binding_like_11 Periplasmic sugar-b	88.64
COG0337	360	AroB 3-dehydroquinate synthetase [Amino acid trans	88.48
TIGR03566	174	FMN_reduc_MsuE FMN reductase, MsuE subfamily. Memb	88.43
PRK13054	300	lipid kinase; Reviewed	88.41
COG2984	322	ABC-type uncharacterized transport system, peripla	87.82
cd01542	259	PBP1_TreR_like Ligand-binding domain of DNA transc	87.47
cd06320	275	PBP1_allose_binding Periplasmic allose-binding dom	87.23
PRK10481	224	hypothetical protein; Provisional	87.04
cd06300	272	PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-bi	86.9
cd06310	273	PBP1_ABC_sugar_binding_like_2 Periplasmic sugar-bi	86.49
TIGR02180	84	GRX_euk Glutaredoxin. This model represents eukary	86.18
cd00578	452	L-fuc_L-ara-isomerases L-fucose isomerase (FucIase	86.09
cd01538	288	PBP1_ABC_xylose_binding Periplasmic xylose-binding	85.23
cd06267	264	PBP1_LacI_sugar_binding_like Ligand binding domain	84.95
cd06292	273	PBP1_LacI_like_10 Ligand-binding domain of unchara	84.51
PF00532	279	Peripla_BP_1: Periplasmic binding proteins and sug	84.4
PRK10423	327	transcriptional repressor RbsR; Provisional	84.16
cd01541	273	PBP1_AraR Ligand-binding domain of DNA transcripti	83.95
cd03419	82	GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX h	83.5
PF10096	243	DUF2334: Uncharacterized protein conserved in bact	83.47
cd06293	269	PBP1_LacI_like_11 Ligand-binding domain of unchara	83.36
cd06308	270	PBP1_sensor_kinase_like Periplasmic binding domain	83.15
TIGR02717	447	AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP	83.11
PRK11175	305	universal stress protein UspE; Provisional	82.96
cd06301	272	PBP1_rhizopine_binding_like Periplasmic binding pr	82.81
PRK09492	315	treR trehalose repressor; Provisional	82.79
cd01540	289	PBP1_arabinose_binding Periplasmic L-arabinose-bin	82.33
PRK10703	341	DNA-binding transcriptional repressor PurR; Provis	82.23
PRK13059	295	putative lipid kinase; Reviewed	82.03
cd06302	298	PBP1_LsrB_Quorum_Sensing Periplasmic binding domai	81.88
cd06281	269	PBP1_LacI_like_5 Ligand-binding domain of uncharac	81.86
TIGR02190	79	GlrX-dom Glutaredoxin-family domain. This C-termin	81.6
cd01536	267	PBP1_ABC_sugar_binding_like Periplasmic sugar-bind	81.36
PRK11303	328	DNA-binding transcriptional regulator FruR; Provis	81.36
PRK10076	213	pyruvate formate lyase II activase; Provisional	81.23
PF06258	311	Mito_fiss_Elm1: Mitochondrial fission ELM1; InterP	81.2
PRK14569	296	D-alanyl-alanine synthetase A; Provisional	80.94
COG1597	301	LCB5 Sphingosine kinase and enzymes related to euk	80.82
TIGR02955	295	TMAO_TorT TMAO reductase system periplasmic protei	80.75
PRK10727	343	DNA-binding transcriptional regulator GalR; Provis	80.24
PRK13057	287	putative lipid kinase; Reviewed	80.13

>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]

Probab=100.00  E-value=5.9e-63  Score=406.42  Aligned_cols=144  Identities=43%  Similarity=0.694  Sum_probs=141.8

Q ss_pred             CeEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhhccCCc
Q 028883           59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQIL  138 (202)
Q Consensus        59 ~~V~IimGS~SD~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~~T~~P  138 (202)
                      ++|+|||||+|||++|++|+++|++|||+||++|+||||||+++.+|+++++++|++|||++||++||||||+|++|++|
T Consensus         3 ~~V~IIMGS~SD~~~mk~Aa~~L~~fgi~ye~~VvSAHRTPe~m~~ya~~a~~~g~~viIAgAGgAAHLPGmvAa~T~lP   82 (162)
T COG0041           3 PKVGIIMGSKSDWDTMKKAAEILEEFGVPYEVRVVSAHRTPEKMFEYAEEAEERGVKVIIAGAGGAAHLPGMVAAKTPLP   82 (162)
T ss_pred             ceEEEEecCcchHHHHHHHHHHHHHcCCCeEEEEEeccCCHHHHHHHHHHHHHCCCeEEEecCcchhhcchhhhhcCCCC
Confidence            38999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEecCCCCCCChhh-HHHhhcCCCCCeeeEEecCChhhHHHHHHHHHccCCHHHHHHHHHHHhC
Q 028883          139 VIRVPLLSEDWSEDD-VINSIRMPSHVQVASVPRNNAKNAALYAVKVLGIADEDLLERIRKYVEE  202 (202)
Q Consensus       139 VIgVP~~~~~l~G~D-LlS~vqMP~GvpVatV~I~n~~NAAl~Aa~IL~~~d~~l~~kl~~~~~~  202 (202)
                      |||||+++..|+|+| |+|++|||+|+|||||+|++++|||++|+|||++.|++|++||++||++
T Consensus        83 ViGVPv~s~~L~GlDSL~SiVQMP~GvPVaTvaIg~a~NAallAa~ILa~~d~~l~~kl~~~r~~  147 (162)
T COG0041          83 VIGVPVQSKALSGLDSLLSIVQMPAGVPVATVAIGNAANAALLAAQILAIKDPELAEKLAEFREA  147 (162)
T ss_pred             eEeccCccccccchHHHHHHhcCCCCCeeEEEeecchhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            999999999999999 9999999999999999999999999999999999999999999999973

>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein

Probab=100.00  E-value=1.5e-60  Score=392.64  Aligned_cols=142  Identities=48%  Similarity=0.748  Sum_probs=139.8

Q ss_pred             EEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhhccCCcEE
Q 028883           61 VGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQILVI  140 (202)
Q Consensus        61 V~IimGS~SD~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~~T~~PVI  140 (202)
                      |+|||||+||+++|+|+.++|++|||+||++|+|+||+|+++.+|+++++++|++|||++|||+||||||+|++|++|||
T Consensus         1 V~IimGS~SD~~~~~~a~~~L~~~gi~~dv~V~SaHRtp~~~~~~~~~a~~~g~~viIa~AG~aa~Lpgvva~~t~~PVI   80 (156)
T TIGR01162         1 VGIIMGSDSDLPTMKKAADILEEFGIPYELRVVSAHRTPELMLEYAKEAEERGIKVIIAGAGGAAHLPGMVAALTPLPVI   80 (156)
T ss_pred             CEEEECcHhhHHHHHHHHHHHHHcCCCeEEEEECcccCHHHHHHHHHHHHHCCCeEEEEeCCccchhHHHHHhccCCCEE
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCCCCCChhh-HHHhhcCCCCCeeeEEecCChhhHHHHHHHHHccCCHHHHHHHHHHHhC
Q 028883          141 RVPLLSEDWSEDD-VINSIRMPSHVQVASVPRNNAKNAALYAVKVLGIADEDLLERIRKYVEE  202 (202)
Q Consensus       141 gVP~~~~~l~G~D-LlS~vqMP~GvpVatV~I~n~~NAAl~Aa~IL~~~d~~l~~kl~~~~~~  202 (202)
                      |||++++.++|+| ||||+|||+|+||+||+|||++|||++|+|||+++|++||+||++||++
T Consensus        81 gvP~~~~~l~G~daLlS~vqmP~gvpvatv~I~~~~nAa~~AaqIl~~~d~~l~~kl~~~r~~  143 (156)
T TIGR01162        81 GVPVPSKALSGLDSLLSIVQMPSGVPVATVAIGNAGNAALLAAQILGIKDPELAEKLKEYREN  143 (156)
T ss_pred             EecCCccCCCCHHHHHHHhcCCCCCeeEEEEcCChhHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            9999988899999 9999999999999999999999999999999999999999999999973

Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.

>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE

Probab=100.00  E-value=3.8e-58  Score=376.20  Aligned_cols=144  Identities=40%  Similarity=0.633  Sum_probs=128.3

Q ss_pred             CeEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhhccCCc
Q 028883           59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQIL  138 (202)
Q Consensus        59 ~~V~IimGS~SD~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~~T~~P  138 (202)
                      |+|+|||||+||+++++|+.++|++||++||++|+|+||+|+++.+|+++++++|++|||++||++|||||++||+|++|
T Consensus         1 p~V~Ii~gs~SD~~~~~~a~~~L~~~gi~~~~~V~saHR~p~~l~~~~~~~~~~~~~viIa~AG~~a~Lpgvva~~t~~P   80 (150)
T PF00731_consen    1 PKVAIIMGSTSDLPIAEEAAKTLEEFGIPYEVRVASAHRTPERLLEFVKEYEARGADVIIAVAGMSAALPGVVASLTTLP   80 (150)
T ss_dssp             -EEEEEESSGGGHHHHHHHHHHHHHTT-EEEEEE--TTTSHHHHHHHHHHTTTTTESEEEEEEESS--HHHHHHHHSSS-
T ss_pred             CeEEEEeCCHHHHHHHHHHHHHHHHcCCCEEEEEEeccCCHHHHHHHHHHhccCCCEEEEEECCCcccchhhheeccCCC
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEecCCCCCCChhh-HHHhhcCCCCCeeeEEecCChhhHHHHHHHHHccCCHHHHHHHHHHHhC
Q 028883          139 VIRVPLLSEDWSEDD-VINSIRMPSHVQVASVPRNNAKNAALYAVKVLGIADEDLLERIRKYVEE  202 (202)
Q Consensus       139 VIgVP~~~~~l~G~D-LlS~vqMP~GvpVatV~I~n~~NAAl~Aa~IL~~~d~~l~~kl~~~~~~  202 (202)
                      |||||+++++++|+| |+|++|||+|+||+||+|||++|||++|+|||+++|+++|+||++||++
T Consensus        81 VIgvP~~~~~~~g~d~l~S~vqMp~g~pvatv~i~~~~nAA~~A~~ILa~~d~~l~~kl~~~~~~  145 (150)
T PF00731_consen   81 VIGVPVSSGYLGGLDSLLSIVQMPSGVPVATVGINNGFNAALLAARILALKDPELREKLRAYREK  145 (150)
T ss_dssp             EEEEEE-STTTTTHHHHHHHHT--TTS--EE-SSTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             EEEeecCcccccCcccHHHHHhccCCCCceEEEccCchHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            999999999999999 9999999999999999999999999999999999999999999999974

PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....

>PLN02948 phosphoribosylaminoimidazole carboxylase

Probab=100.00  E-value=4.6e-57  Score=430.64  Aligned_cols=182  Identities=40%  Similarity=0.644  Sum_probs=169.0

Q ss_pred             eecCceeEecCChhhhhhccccCcCCCCCCccccccCCCCCCCCCCeEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEE
Q 028883           14 VSRGTIPVLASSNGSATSRRKDDSSVREPSTVFEEENPNGDSTDAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKIL   93 (202)
Q Consensus        14 ~~~ghi~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~IimGS~SD~~v~~~a~~~L~~~gi~~ev~V~   93 (202)
                      +.+|||++++.|.++++++++.+++.-+      .. ....+...++|+|||||+||+++|++|+++|++|||+|+++|+
T Consensus       373 rkmGhV~~~g~~~~e~~~~~~~~~~~~~------~~-~~~~~~~~~~v~i~~gs~sd~~~~~~~~~~l~~~g~~~~~~v~  445 (577)
T PLN02948        373 RKMGHITVVGPSAAEVEARLDQLLAEES------AD-PDALPKGTPLVGIIMGSDSDLPTMKDAAEILDSFGVPYEVTIV  445 (577)
T ss_pred             CeeEEEEEecCCHHHHHHHHHHHHhhhc------cC-CCCCCCCCCeEEEEECchhhHHHHHHHHHHHHHcCCCeEEEEE
Confidence            7899999999999999999999872111      11 2333445689999999999999999999999999999999999


Q ss_pred             ccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhhccCCcEEEecCCCCCCChhh-HHHhhcCCCCCeeeEEecC
Q 028883           94 PPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQILVIRVPLLSEDWSEDD-VINSIRMPSHVQVASVPRN  172 (202)
Q Consensus        94 SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~~T~~PVIgVP~~~~~l~G~D-LlS~vqMP~GvpVatV~I~  172 (202)
                      ||||+|+++.+|+++++++|++|||++|||+||||||+||+|++||||||++++.++|+| ||||||||+|+||+||+||
T Consensus       446 sahr~~~~~~~~~~~~~~~~~~v~i~~ag~~~~l~~~~a~~t~~pvi~vp~~~~~~~g~~~l~s~~~~p~g~pv~~v~i~  525 (577)
T PLN02948        446 SAHRTPERMFSYARSAHSRGLQVIIAGAGGAAHLPGMVASMTPLPVIGVPVKTSHLDGLDSLLSIVQMPRGVPVATVAIG  525 (577)
T ss_pred             CCccCHHHHHHHHHHHHHCCCCEEEEEcCccccchHHHhhccCCCEEEcCCCCCCCCcHHHHHHHhcCCCCCeEEEEecC
Confidence            999999999999999999999999999999999999999999999999999988999999 9999999999999999999


Q ss_pred             ChhhHHHHHHHHHccCCHHHHHHHHHHHhC
Q 028883          173 NAKNAALYAVKVLGIADEDLLERIRKYVEE  202 (202)
Q Consensus       173 n~~NAAl~Aa~IL~~~d~~l~~kl~~~~~~  202 (202)
                      |++|||++|+|||+++|++||+||++||++
T Consensus       526 ~~~~aa~~a~~i~~~~~~~~~~~~~~~~~~  555 (577)
T PLN02948        526 NATNAGLLAVRMLGASDPDLLDKMEAYQED  555 (577)
T ss_pred             ChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999973

>COG1691 NCAIR mutase (PurE)-related proteins [General function prediction only]

Probab=100.00  E-value=3.6e-35  Score=255.03  Aligned_cols=172  Identities=21%  Similarity=0.248  Sum_probs=144.8

Q ss_pred             eeeeecCceeEecCChhhhhhcc-ccCcCCCCCCcc-ccccC-CCCCCCCCCeEEEEecCCCCHHHHHHHHHHHHHhCCC
Q 028883           11 VRTVSRGTIPVLASSNGSATSRR-KDDSSVREPSTV-FEEEN-PNGDSTDAPIVGIIMESDLDLPVMNDAARTLSDFGVP   87 (202)
Q Consensus        11 ~~~~~~ghi~v~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~-~~~~~~~~~~V~IimGS~SD~~v~~~a~~~L~~~gi~   87 (202)
                      -+.+.++|+++.++-..|..+-+ +.+.+++|+.++ +.... .++.+...++|+|+++++||+|+++||+.+++.+|++
T Consensus        67 ~~~~~~~~~~l~tR~~~e~~~~l~~~~~d~~y~e~ar~~~i~~~~~~~~~~g~vgvlsAGTSDlPvAeEa~~tae~lG~e  146 (254)
T COG1691          67 EVLLEKNGIALATRVSPELLEALKDRFADVEYNEAARTLAIKDPNYEPKKGGKVGVLSAGTSDLPVAEEAAVTAEELGVE  146 (254)
T ss_pred             HHHHHcCCeeeeecCCHHHHHHhhccccceEEcccCcEEEecCCCCCcccCceEEEEecCCCCcchHHHHHHHHHHhCce
Confidence            45677899999998755555555 666777777776 44443 4456666689999999999999999999999999998


Q ss_pred             ----eEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhhccCCcEEEecCCCC---CCChhh-HHHhhc
Q 028883           88 ----YEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQILVIRVPLLSE---DWSEDD-VINSIR  159 (202)
Q Consensus        88 ----~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~~T~~PVIgVP~~~~---~l~G~D-LlS~vq  159 (202)
                          ||++|++.||....+.+...    ++.+++|++|||+++||+++||+++.||||||++.+   .++|+. ||+|||
T Consensus       147 v~~~~DvGVAGiHRLl~~l~r~~~----~~~~~lIVvAGMEGaLPsvvagLvD~PVIavPTsVGYG~g~gGiaaLltMLq  222 (254)
T COG1691         147 VQKVYDVGVAGIHRLLSALKRLKI----EDADVLIVVAGMEGALPSVVAGLVDVPVIAVPTSVGYGAGGGGIAALLTMLQ  222 (254)
T ss_pred             EEEEEeeccchHHhhhhHHHHHHh----hCCCeEEEEcccccchHHHHHhccCCCeEecccccccCcCCccHHHHHHHHH
Confidence                89999999999987766543    568999999999999999999999999999999975   467899 999999


Q ss_pred             C-CCCCeeeEEecCChhhHHHHHHHHHccC
Q 028883          160 M-PSHVQVASVPRNNAKNAALYAVKVLGIA  188 (202)
Q Consensus       160 M-P~GvpVatV~I~n~~NAAl~Aa~IL~~~  188 (202)
                      + .||  +++|||||+++||.+|+||+...
T Consensus       223 SCspG--v~VVNIdNGfGAa~~A~~I~r~~  250 (254)
T COG1691         223 SCSPG--VGVVNIDNGFGAAVLAVQILRRI  250 (254)
T ss_pred             hcCCC--eEEEEccCchHHHHHHHHHHHHH
Confidence            6 444  58899999999999999999864

>KOG2835 consensus Phosphoribosylamidoimidazole-succinocarboxamide synthase [Nucleotide transport and metabolism]

Probab=99.95  E-value=1.1e-28  Score=225.76  Aligned_cols=176  Identities=25%  Similarity=0.223  Sum_probs=162.8

Q ss_pred             eeeeecCceeEecCChhhhhhccccCcCCCCCCccccccCCCCCCCCCCeEEEEecCCCCHHHHHHHHHHHHHhCCCeEE
Q 028883           11 VRTVSRGTIPVLASSNGSATSRRKDDSSVREPSTVFEEENPNGDSTDAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEI   90 (202)
Q Consensus        11 ~~~~~~ghi~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~IimGS~SD~~v~~~a~~~L~~~gi~~ev   90 (202)
                      -+.+-+||++..++++.|.+.+.+....+         .    ...-.+.+.++|++++|.++|..++..++.+++++|.
T Consensus       174 ~k~~~~~h~~~I~d~~ie~gv~~~~~~~~---------~----a~~v~~~~~~r~~~~~d~~im~D~~~~~d~~~vt~e~  240 (373)
T KOG2835|consen  174 LKAAWAGHNCAISDMKIEFGVDVTLGEIV---------L----ASDVIDNDSWRMWPDGDGRIMKDKKVYFDLDEVTNEG  240 (373)
T ss_pred             hhhhhcCCccccccchhhhccchhhhhhh---------h----hhcccchhheEEcccCCcceeeeeeEEeccccCCccc
Confidence            35677899999999999999998776411         1    1123367999999999999999999999999999999


Q ss_pred             EEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhhccCCcEEEecCCCCCCChhh-HHHhhcCCCCCeeeEE
Q 028883           91 KILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQILVIRVPLLSEDWSEDD-VINSIRMPSHVQVASV  169 (202)
Q Consensus        91 ~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~~T~~PVIgVP~~~~~l~G~D-LlS~vqMP~GvpVatV  169 (202)
                      .+.++||+|..+..|+..+.+||++++|++||.++|+|+++++.++.|  |||+....++|.| +||+||||.|+||+||
T Consensus       241 ~ilv~~~~t~~msr~a~~a~~~~~~~~iaga~~~~~~p~~v~a~f~~~--gvp~~~~~~dg~~~~l~~V~~~~~~~~~~v  318 (373)
T KOG2835|consen  241 LILVDENTTPVMSRYATSAKSRGVVLWIAGAYKAGHEPLMVDAEFERP--GVPVVFVAVDGRDNLLSIVQMPNGVPVATV  318 (373)
T ss_pred             eEEEeecCchhHhhhhhhcccCceEEEEeccCCCCCChhhHHhhcccc--CcceeeeecccccccccceeccCCcccccc
Confidence            999999999999999999999999999999999999999999999999  9999999999999 9999999999999999


Q ss_pred             ecCChhhHHHHHHHHHccCCHHHHHHHHHHHh
Q 028883          170 PRNNAKNAALYAVKVLGIADEDLLERIRKYVE  201 (202)
Q Consensus       170 ~I~n~~NAAl~Aa~IL~~~d~~l~~kl~~~~~  201 (202)
                      +|+|++|||++|+|||+..|+.||.|++.|+.
T Consensus       319 ~v~~p~~aa~~aar~l~~~~~~i~gk~~~~~l  350 (373)
T KOG2835|consen  319 AVNNPENAALLAARILGLSNEMITGKMRSYQL  350 (373)
T ss_pred             ccCCHHHHHHHHHHHHHhhhhHHHHHHHHhcc
Confidence            99999999999999999999999999999874

>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation

Probab=97.49  E-value=0.0007  Score=60.98  Aligned_cols=88  Identities=17%  Similarity=0.123  Sum_probs=74.4

Q ss_pred             CeEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcC-chhhhhhhccCC
Q 028883           59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEA-HLSGVAAANSQI  137 (202)
Q Consensus        59 ~~V~IimGS~SD~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa-~LpgvvA~~T~~  137 (202)
                      .++.||+|+.+--...++..+.|++.|+.+.+.....+-+.+.+.+.++.+++.++++||++-|++. -.+-.+|....+
T Consensus        23 ~r~livt~~~~~~~~~~~v~~~L~~~~i~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGS~iD~aK~ia~~~~~  102 (351)
T cd08170          23 KRALIIADEFVLDLVGAKIEESLAAAGIDARFEVFGGECTRAEIERLAEIARDNGADVVIGIGGGKTLDTAKAVADYLGA  102 (351)
T ss_pred             CeEEEEECHHHHHHHHHHHHHHHHhCCCeEEEEEeCCcCCHHHHHHHHHHHhhcCCCEEEEecCchhhHHHHHHHHHcCC
Confidence            4789999876665889999999999999876666777888899999999998888999999999965 466677777889


Q ss_pred             cEEEecCCC
Q 028883          138 LVIRVPLLS  146 (202)
Q Consensus       138 PVIgVP~~~  146 (202)
                      |+|.||+..
T Consensus       103 P~iaIPTTa  111 (351)
T cd08170         103 PVVIVPTIA  111 (351)
T ss_pred             CEEEeCCcc
Confidence            999999974

Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.

>cd08550 GlyDH-like Glycerol_dehydrogenase-like

Probab=97.47  E-value=0.0007  Score=61.11  Aligned_cols=88  Identities=13%  Similarity=0.104  Sum_probs=73.3

Q ss_pred             CeEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCc-CchhhhhhhccCC
Q 028883           59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVE-AHLSGVAAANSQI  137 (202)
Q Consensus        59 ~~V~IimGS~SD~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~a-a~LpgvvA~~T~~  137 (202)
                      .++.||++..+-....++..+.|++-|+.+++.+.+-+-+.+.+.+.++.+++.++++||++-|++ --++..+|....+
T Consensus        23 ~~~liv~~~~~~~~~~~~v~~~l~~~~i~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavGGGs~~D~aK~ia~~~~~  102 (349)
T cd08550          23 SKVAVVGGKTVLKKSRPRFEAALAKSIIVVDVIVFGGECSTEEVVKALCGAEEQEADVIIGVGGGKTLDTAKAVADRLDK  102 (349)
T ss_pred             CeEEEEEChHHHHHHHHHHHHHHHhcCCeeEEEEcCCCCCHHHHHHHHHHHHhcCCCEEEEecCcHHHHHHHHHHHHcCC
Confidence            468889987665577889999999989887776667777888999999999888899999998885 4577788888899


Q ss_pred             cEEEecCCC
Q 028883          138 LVIRVPLLS  146 (202)
Q Consensus       138 PVIgVP~~~  146 (202)
                      |+|.||+..
T Consensus       103 p~i~VPTta  111 (349)
T cd08550         103 PIVIVPTIA  111 (349)
T ss_pred             CEEEeCCcc
Confidence            999999964

Families of proteins related to glycerol dehydrogenases. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. Some subfamilies have not been characterized till now.

>cd08171 GlyDH-like2 Glycerol dehydrogenase-like

Probab=97.23  E-value=0.0014  Score=59.09  Aligned_cols=88  Identities=11%  Similarity=0.033  Sum_probs=72.1

Q ss_pred             CeEEEEecCCCCHHHHHHHHHHHHHhCCCeEE-EEEccCCCchHHHHHHHHHhhcCceEEEEecCCc-CchhhhhhhccC
Q 028883           59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEI-KILPPHQNCKEALSYALSAKERGIKIIIVGDGVE-AHLSGVAAANSQ  136 (202)
Q Consensus        59 ~~V~IimGS~SD~~v~~~a~~~L~~~gi~~ev-~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~a-a~LpgvvA~~T~  136 (202)
                      .++.||+|..+-....++..+.|++-|+.+.+ .....+-+-+.+.+..+.+++.++++||++-|++ --++..+|....
T Consensus        23 ~r~liv~d~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~iiavGGGs~~D~aK~ia~~~~  102 (345)
T cd08171          23 KKVVVIGGKTALAAAKDKIKAALEQSGIEITDFIWYGGESTYENVERLKKNPAVQEADMIFAVGGGKAIDTVKVLADKLG  102 (345)
T ss_pred             CEEEEEeCHHHHHHHHHHHHHHHHHCCCeEEEEEecCCCCCHHHHHHHHHHHhhcCCCEEEEeCCcHHHHHHHHHHHHcC
Confidence            57999999877667788889999998997653 3456677888888998888888899999998885 457778888888


Q ss_pred             CcEEEecCCC
Q 028883          137 ILVIRVPLLS  146 (202)
Q Consensus       137 ~PVIgVP~~~  146 (202)
                      +|+|.||+..
T Consensus       103 ~p~i~VPTt~  112 (345)
T cd08171         103 KPVFTFPTIA  112 (345)
T ss_pred             CCEEEecCcc
Confidence            9999999964

Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.

>PRK00843 egsA NAD(P)-dependent glycerol-1-phosphate dehydrogenase; Reviewed

Probab=97.23  E-value=0.0021  Score=58.36  Aligned_cols=86  Identities=19%  Similarity=0.128  Sum_probs=73.0

Q ss_pred             CeEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCC-cCchhhhhhhccCC
Q 028883           59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGV-EAHLSGVAAANSQI  137 (202)
Q Consensus        59 ~~V~IimGS~SD~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~-aa~LpgvvA~~T~~  137 (202)
                      .++.||++..+--...++..+.|++.| .+.+. ...|.+.+.+.+.++.+.+.+.++||++.|+ ..-+++.+|-+...
T Consensus        35 ~~~livtd~~~~~~~~~~l~~~l~~~~-~~~~~-~~~~~t~~~v~~~~~~~~~~~~d~IIaiGGGsv~D~ak~vA~~rgi  112 (350)
T PRK00843         35 GRALIVTGPTTKKIAGDRVEENLEDAG-DVEVV-IVDEATMEEVEKVEEKAKDVNAGFLIGVGGGKVIDVAKLAAYRLGI  112 (350)
T ss_pred             CeEEEEECCcHHHHHHHHHHHHHHhcC-CeeEE-eCCCCCHHHHHHHHHHhhccCCCEEEEeCCchHHHHHHHHHHhcCC
Confidence            479999998887667788888999888 77654 5679999999999999988889999999887 45599999988899


Q ss_pred             cEEEecCCC
Q 028883          138 LVIRVPLLS  146 (202)
Q Consensus       138 PVIgVP~~~  146 (202)
                      |+|.||+..
T Consensus       113 p~I~IPTT~  121 (350)
T PRK00843        113 PFISVPTAA  121 (350)
T ss_pred             CEEEeCCCc
Confidence            999999974

>cd08175 G1PDH Glycerol-1-phosphate dehydrogenase (G1PDH) catalyzes the reversible reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in an NADH-dependent manner

Probab=97.22  E-value=0.0017  Score=58.46  Aligned_cols=87  Identities=15%  Similarity=0.117  Sum_probs=68.9

Q ss_pred             CeEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEccC---CCchHHHHHHHHHhhcCceEEEEecCCc-Cchhhhhhhc
Q 028883           59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPH---QNCKEALSYALSAKERGIKIIIVGDGVE-AHLSGVAAAN  134 (202)
Q Consensus        59 ~~V~IimGS~SD~~v~~~a~~~L~~~gi~~ev~V~SaH---Rtp~~l~~~~~~~~~~g~~ViIa~AG~a-a~LpgvvA~~  134 (202)
                      .++.||++..+--...++..+.|++.|+.+++......   .+.+.+.+.++.+.+ ++++||++.|++ --.+..+|.+
T Consensus        24 ~~~livtd~~~~~~~~~~v~~~l~~~~i~~~~~~~~~~~~~pt~~~v~~~~~~~~~-~~d~IIaIGGGs~~D~aK~vA~~  102 (348)
T cd08175          24 KKALIVADENTYAAAGKKVEALLKRAGVVVLLIVLPAGDLIADEKAVGRVLKELER-DTDLIIAVGSGTINDITKYVSYK  102 (348)
T ss_pred             CcEEEEECCcHHHHHHHHHHHHHHHCCCeeEEeecCCCcccCCHHHHHHHHHHhhc-cCCEEEEECCcHHHHHHHHHHHh
Confidence            36889988755444478899999999998765543333   888888898888866 789999999885 4678888888


Q ss_pred             cCCcEEEecCCC
Q 028883          135 SQILVIRVPLLS  146 (202)
Q Consensus       135 T~~PVIgVP~~~  146 (202)
                      ..+|+|.||+..
T Consensus       103 ~~~p~i~IPTTa  114 (348)
T cd08175         103 TGIPYISVPTAP  114 (348)
T ss_pred             cCCCEEEecCcc
Confidence            899999999974

Glycerol-1-phosphate dehydrogenase (G1PDH) plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires a Ni++ ion. In Bacillus subtilis, it has been described as AraM gene in L-arabinose (ara) operon. AraM protein forms homodimer. This family is bacteria specific.

>PRK09423 gldA glycerol dehydrogenase; Provisional

Probab=97.21  E-value=0.0023  Score=58.22  Aligned_cols=88  Identities=16%  Similarity=0.126  Sum_probs=72.5

Q ss_pred             CeEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCc-CchhhhhhhccCC
Q 028883           59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVE-AHLSGVAAANSQI  137 (202)
Q Consensus        59 ~~V~IimGS~SD~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~a-a~LpgvvA~~T~~  137 (202)
                      .++.||++..+--...++..+.|++.|+.+.+.....+-+-+.+.+.++.+.+.++++||++.|++ --++..+|....+
T Consensus        30 ~~~livtd~~~~~~~~~~v~~~l~~~~~~~~~~~~~~ep~~~~v~~~~~~~~~~~~d~IIavGGGsv~D~aK~iA~~~~~  109 (366)
T PRK09423         30 KRALVIADEFVLGIVGDRVEASLKEAGLTVVFEVFNGECSDNEIDRLVAIAEENGCDVVIGIGGGKTLDTAKAVADYLGV  109 (366)
T ss_pred             CEEEEEEChhHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEecChHHHHHHHHHHHHcCC
Confidence            478899987665557888888999999987555567788888889999988888899999999885 5678888888899


Q ss_pred             cEEEecCCC
Q 028883          138 LVIRVPLLS  146 (202)
Q Consensus       138 PVIgVP~~~  146 (202)
                      |+|.||+..
T Consensus       110 p~i~IPTta  118 (366)
T PRK09423        110 PVVIVPTIA  118 (366)
T ss_pred             CEEEeCCcc
Confidence            999999964

>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like

Probab=97.19  E-value=0.002  Score=58.36  Aligned_cols=88  Identities=16%  Similarity=0.180  Sum_probs=70.8

Q ss_pred             CeEEEEecCCCCH-HHHHHHHHHHHHhCCCeEEE-EEccCCCchHHHHHHHHHhhcCceEEEEecCCcC-chhhhhhhcc
Q 028883           59 PIVGIIMESDLDL-PVMNDAARTLSDFGVPYEIK-ILPPHQNCKEALSYALSAKERGIKIIIVGDGVEA-HLSGVAAANS  135 (202)
Q Consensus        59 ~~V~IimGS~SD~-~v~~~a~~~L~~~gi~~ev~-V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa-~LpgvvA~~T  135 (202)
                      .+|.||+|..+-. ...++..+.|++-|+.+.+. -...|-+.+.+.+.++.++..++++||++-|++. -++..+|...
T Consensus        24 ~~~lvv~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IiaiGGGs~~D~AK~va~~~  103 (370)
T cd08551          24 RKALIVTDPGLVKTGVLDKVIDSLKEAGIEVVIFDGVEPNPTLSNVDAAVAAYREEGCDGVIAVGGGSVLDTAKAIALLA  103 (370)
T ss_pred             CeEEEEeCcchhhCccHHHHHHHHHHcCCeEEEECCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHHH
Confidence            4799999987755 78889999999988876532 3557899999999999998888999999988754 4566666654


Q ss_pred             ------------------CCcEEEecCCC
Q 028883          136 ------------------QILVIRVPLLS  146 (202)
Q Consensus       136 ------------------~~PVIgVP~~~  146 (202)
                                        .+|+|.||+..
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~p~i~VPTt~  132 (370)
T cd08551         104 TNPGDIWDYEGGKPVIKPALPLIAIPTTA  132 (370)
T ss_pred             hCCCcHHHHhCcccccCCCCCEEEecCCC
Confidence                              78999999975

Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.

>cd08195 DHQS Dehydroquinate synthase (DHQS) catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis

Probab=97.12  E-value=0.0037  Score=56.44  Aligned_cols=87  Identities=20%  Similarity=0.270  Sum_probs=73.0

Q ss_pred             CeEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEcc---CCCchHHHHHHHHHhhcCc---eEEEEecCC-cCchhhhh
Q 028883           59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPP---HQNCKEALSYALSAKERGI---KIIIVGDGV-EAHLSGVA  131 (202)
Q Consensus        59 ~~V~IimGS~SD~~v~~~a~~~L~~~gi~~ev~V~Sa---HRtp~~l~~~~~~~~~~g~---~ViIa~AG~-aa~Lpgvv  131 (202)
                      .++.||++....-.+.++..+.|+..|+.+++-+...   +.+.+.+.+..+.+.+.++   ++||++.|+ ..-+++++
T Consensus        25 ~~~livtd~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~e~~~~~~~v~~~~~~~~~~~~~r~d~IIaiGGGsv~D~ak~v  104 (345)
T cd08195          25 SKILIVTDENVAPLYLEKLKAALEAAGFEVEVIVIPAGEASKSLETLEKLYDALLEAGLDRKSLIIALGGGVVGDLAGFV  104 (345)
T ss_pred             CeEEEEECCchHHHHHHHHHHHHHhcCCceEEEEeCCCCCcCCHHHHHHHHHHHHHcCCCCCCeEEEECChHHHhHHHHH
Confidence            4789999887776889999999999999887666553   7888999999988888777   899999888 56688898


Q ss_pred             hh--ccCCcEEEecCC
Q 028883          132 AA--NSQILVIRVPLL  145 (202)
Q Consensus       132 A~--~T~~PVIgVP~~  145 (202)
                      |+  ....|+|.||+.
T Consensus       105 A~~~~rgip~i~VPTT  120 (345)
T cd08195         105 AATYMRGIDFIQIPTT  120 (345)
T ss_pred             HHHHhcCCCeEEcchh
Confidence            84  678999999996

Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway, which involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds, is found in bacteria, microbial eukaryotes, and plants, but not in mammals. Therefore, enzymes of this pathway are attractive targets for the development of non-toxic antimicrobial compounds, herbicides and anti-parasitic agents. The activity of DHQS requires nicotinamide adenine dinucleotide (NAD) as cofactor. A single active site in DHQS catalyzes five sequential reactions involving alcohol oxidation, phosphate elimination, carbonyl reduction, ring opening, and intramolecular aldol

>TIGR01357 aroB 3-dehydroquinate synthase

Probab=97.08  E-value=0.0043  Score=55.82  Aligned_cols=87  Identities=21%  Similarity=0.193  Sum_probs=68.5

Q ss_pred             CeEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEcc---CCCchHHHHHHHHHhhcCc---eEEEEecCCcC-chhhhh
Q 028883           59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPP---HQNCKEALSYALSAKERGI---KIIIVGDGVEA-HLSGVA  131 (202)
Q Consensus        59 ~~V~IimGS~SD~~v~~~a~~~L~~~gi~~ev~V~Sa---HRtp~~l~~~~~~~~~~g~---~ViIa~AG~aa-~Lpgvv  131 (202)
                      .+|.||++...--...++..+.|++.|+++.+.+...   +.+.+.+.+.++.+.+.++   ++||++.|++. -+++.+
T Consensus        21 ~~~livtd~~~~~~~~~~v~~~L~~~g~~~~~~~~~~~e~~~~~~~v~~~~~~~~~~~~~r~d~IIavGGGsv~D~aK~i  100 (344)
T TIGR01357        21 SKLVIITDETVADLYADKLLEALQALGYNVLKLTVPDGEESKSLETVQRLYDQLLEAGLDRSSTIIALGGGVVGDLAGFV  100 (344)
T ss_pred             CeEEEEECCchHHHHHHHHHHHHHhcCCceeEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCCEEEEEcChHHHHHHHHH
Confidence            5789999877665688889999999999887655542   5566788888888877665   89999988854 478888


Q ss_pred             hh--ccCCcEEEecCC
Q 028883          132 AA--NSQILVIRVPLL  145 (202)
Q Consensus       132 A~--~T~~PVIgVP~~  145 (202)
                      |+  ...+|+|.||+.
T Consensus       101 A~~~~~~~p~i~VPTT  116 (344)
T TIGR01357       101 AATYMRGIRFIQVPTT  116 (344)
T ss_pred             HHHHccCCCEEEecCc
Confidence            74  457899999995

This model represents 3-dehydroquinate synthase, the enzyme catalyzing the second of seven steps in the shikimate pathway of chorismate biosynthesis. Chorismate is the last common intermediate in the biosynthesis of all three aromatic amino acids.

>cd08549 G1PDH_related Glycerol-1-phosphate_dehydrogenase and related proteins

Probab=97.01  E-value=0.0044  Score=55.89  Aligned_cols=87  Identities=9%  Similarity=-0.037  Sum_probs=68.3

Q ss_pred             CeEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEc--cCCCchHHHHHHHHHhhcCceEEEEecCC-cCchhhhhhhcc
Q 028883           59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILP--PHQNCKEALSYALSAKERGIKIIIVGDGV-EAHLSGVAAANS  135 (202)
Q Consensus        59 ~~V~IimGS~SD~~v~~~a~~~L~~~gi~~ev~V~S--aHRtp~~l~~~~~~~~~~g~~ViIa~AG~-aa~LpgvvA~~T  135 (202)
                      .+|.||+++..-....++..+.|++-|+.+++....  .+-+.+.+.+..+.+.. ++++||++-|+ ..-+++++|...
T Consensus        25 ~kvlivtd~~~~~~~~~~i~~~L~~~~~~~~i~~~~~~~~p~~~~v~~~~~~~~~-~~d~IIaiGGGsv~D~aK~iA~~~  103 (332)
T cd08549          25 SKIMIVCGNNTYKVAGKEIIERLESNNFTKEVLERDSLLIPDEYELGEVLIKLDK-DTEFLLGIGSGTIIDLVKFVSFKV  103 (332)
T ss_pred             CcEEEEECCcHHHHHHHHHHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhc-CCCEEEEECCcHHHHHHHHHHHHc
Confidence            379999997775556788999999988876653222  33356778888888776 78999999887 567889999888


Q ss_pred             CCcEEEecCCC
Q 028883          136 QILVIRVPLLS  146 (202)
Q Consensus       136 ~~PVIgVP~~~  146 (202)
                      .+|+|.||+..
T Consensus       104 gip~I~VPTT~  114 (332)
T cd08549         104 GKPFISVPTAP  114 (332)
T ss_pred             CCCEEEeCCCc
Confidence            99999999974

Bacterial and archeal glycerol-1-phosphate dehydrogenase-like oxidoreductases. The proteins have similarity with glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. It also contains archaeal Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) that plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids.

>cd08173 Gro1PDH Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme

Probab=96.98  E-value=0.0063  Score=54.75  Aligned_cols=87  Identities=21%  Similarity=0.168  Sum_probs=71.4

Q ss_pred             CeEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCC-cCchhhhhhhccCC
Q 028883           59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGV-EAHLSGVAAANSQI  137 (202)
Q Consensus        59 ~~V~IimGS~SD~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~-aa~LpgvvA~~T~~  137 (202)
                      .++.||++...-....++..+.|++.| .+.+.+ ..+=+.+.+.+..+.+.+.++++||++.|+ ..-+++.+|.+..+
T Consensus        26 ~~~liv~d~~~~~~~~~~v~~~l~~~~-~~~~~~-~~~~~~~~v~~~~~~~~~~~~d~iIaiGGGs~~D~aK~~a~~~~~  103 (339)
T cd08173          26 GRVLVVTGPTTKSIAGKKVEALLEDEG-EVDVVI-VEDATYEEVEKVESSARDIGADFVIGVGGGRVIDVAKVAAYKLGI  103 (339)
T ss_pred             CeEEEEECCchHHHHHHHHHHHHHhcC-CeEEEE-eCCCCHHHHHHHHHHhhhcCCCEEEEeCCchHHHHHHHHHHhcCC
Confidence            478899988776678889999999988 776654 356678888899988888889999998887 55688888888899


Q ss_pred             cEEEecCCCC
Q 028883          138 LVIRVPLLSE  147 (202)
Q Consensus       138 PVIgVP~~~~  147 (202)
                      |+|.||+..+
T Consensus       104 p~i~iPTT~~  113 (339)
T cd08173         104 PFISVPTAAS  113 (339)
T ss_pred             CEEEecCccc
Confidence            9999999743

Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH, EC 1.1.1.261) plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids. It catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. The activity is zinc-dependent. One characteristic feature of archaea is that their cellular membrane has an ether linkage between the glycerol backbone and the hydrocarbon residues. The polar lipids of the members of Archaea consist of di- and tetraethers of glycerol with isoprenoid alcohols bound at the sn-2 and sn-3 positions of the glycerol moiety. The archaeal polar lipids have the enantiomeric configuration of a glycerophosph

>cd07766 DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH)

Probab=96.93  E-value=0.0062  Score=54.08  Aligned_cols=87  Identities=16%  Similarity=0.148  Sum_probs=69.5

Q ss_pred             CeEEEEecCCCCHHHHHHHHHHHHHhCCCeEEE-EEccCCCchHHHHHHHHHhhcCceEEEEecCCc-Cchhhhhhhcc-
Q 028883           59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIK-ILPPHQNCKEALSYALSAKERGIKIIIVGDGVE-AHLSGVAAANS-  135 (202)
Q Consensus        59 ~~V~IimGS~SD~~v~~~a~~~L~~~gi~~ev~-V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~a-a~LpgvvA~~T-  135 (202)
                      .++.||++...--...++..+.|++. +.+.+. ....+.+.+.+.+.++.+.+.++++||++.|++ --++..+|... 
T Consensus        24 ~~~liv~~~~~~~~~~~~v~~~l~~~-~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIaiGGGs~~D~aK~ia~~~~  102 (332)
T cd07766          24 DRALVVSDEGVVKGVGEKVADSLKKL-IAVHIFDGVGPNPTFEEVKEAVERARAAEVDAVIAVGGGSTLDTAKAVAALLN  102 (332)
T ss_pred             CeEEEEeCCchhhhHHHHHHHHHHhc-CcEEEeCCcCCCcCHHHHHHHHHHHHhcCcCEEEEeCCchHHHHHHHHHHHhc
Confidence            36888887765448888999999887 766543 345678888999999998888899999988874 56777888877 


Q ss_pred             -CCcEEEecCCC
Q 028883          136 -QILVIRVPLLS  146 (202)
Q Consensus       136 -~~PVIgVP~~~  146 (202)
                       .+|+|.||+..
T Consensus       103 ~~~p~i~iPTt~  114 (332)
T cd07766         103 RGLPIIIVPTTA  114 (332)
T ss_pred             CCCCEEEEeCCC
Confidence             89999999975

Dehydroquinate synthase-like. This superfamily divides into two subgroups: the dehydroquinate synthase-like, and a large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. Dehydroquinate synthase-like group includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. The alcohol dehydrogenases in this superfamily contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alc

>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like

Probab=96.91  E-value=0.0061  Score=55.70  Aligned_cols=88  Identities=14%  Similarity=0.145  Sum_probs=68.7

Q ss_pred             CeEEEEecCCC--CHHHHHHHHHHHHHhCCCeEE-EEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhh-hhhhc
Q 028883           59 PIVGIIMESDL--DLPVMNDAARTLSDFGVPYEI-KILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSG-VAAAN  134 (202)
Q Consensus        59 ~~V~IimGS~S--D~~v~~~a~~~L~~~gi~~ev-~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~Lpg-vvA~~  134 (202)
                      .+|.||+|..+  .....++..+.|++.|+.+.+ .-...+-+.+.+.+.++.+++.++++||++-|++..=.+ .++..
T Consensus        26 ~r~livt~~~~~~~~g~~~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IiavGGGS~iD~aK~ia~~  105 (380)
T cd08185          26 KKALIVTGNGSSKKTGYLDRVIELLKQAGVEVVVFDKVEPNPTTTTVMEGAALAREEGCDFVVGLGGGSSMDTAKAIAFM  105 (380)
T ss_pred             CeEEEEeCCCchhhccHHHHHHHHHHHcCCeEEEeCCccCCCCHHHHHHHHHHHHHcCCCEEEEeCCccHHHHHHHHHHH
Confidence            48999999877  667889999999999998764 234567888999999988888889999999998754222 33221


Q ss_pred             -----------------------cCCcEEEecCCC
Q 028883          135 -----------------------SQILVIRVPLLS  146 (202)
Q Consensus       135 -----------------------T~~PVIgVP~~~  146 (202)
                                             ..+|+|.||+..
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTta  140 (380)
T cd08185         106 AANEGDYWDYIFGGTGKGKPPPEKALPIIAITTTA  140 (380)
T ss_pred             hhCCCCHHHHhcccccccccCCCCCCCEEEEcCCC
Confidence                                   258999999964

Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.

>cd08183 Fe-ADH2 Iron-containing alcohol dehydrogenases-like

Probab=96.87  E-value=0.0065  Score=55.48  Aligned_cols=86  Identities=13%  Similarity=0.081  Sum_probs=65.6

Q ss_pred             CeEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCc-hhhhhhhc---
Q 028883           59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAH-LSGVAAAN---  134 (202)
Q Consensus        59 ~~V~IimGS~SD~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~-LpgvvA~~---  134 (202)
                      .++.||++..+=  ..++....|++.|+.+.+.-....-+.+.+.+.++.+++.++++||++-|++.. .+..+|..   
T Consensus        23 ~r~livtd~~~~--~~~~v~~~L~~~g~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS~~D~aK~ia~~~~~  100 (374)
T cd08183          23 RRVLLVTGASSL--RAAWLIEALRAAGIEVTHVVVAGEPSVELVDAAVAEARNAGCDVVIAIGGGSVIDAGKAIAALLPN  100 (374)
T ss_pred             CcEEEEECCchH--HHHHHHHHHHHcCCeEEEecCCCCcCHHHHHHHHHHHHhcCCCEEEEecCchHHHHHHHHHHHHcC
Confidence            479999987653  888899999999998765433446666788889888888899999999999654 33344432   


Q ss_pred             -------------------cCCcEEEecCCC
Q 028883          135 -------------------SQILVIRVPLLS  146 (202)
Q Consensus       135 -------------------T~~PVIgVP~~~  146 (202)
                                         ..+|+|.||+..
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~p~i~VPTta  131 (374)
T cd08183         101 PGSVLDYLEGVGRGLPLDGPPLPFIAIPTTA  131 (374)
T ss_pred             CCCHHHHHhccCccccCCCCCCCEEEecCCC
Confidence                               368999999974

Iron-containing alcohol dehydrogenases (Fe-ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is a member of the iron-activated alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown. They are mainly found in bacteria.

>PRK00002 aroB 3-dehydroquinate synthase; Reviewed

Probab=96.79  E-value=0.011  Score=53.86  Aligned_cols=87  Identities=22%  Similarity=0.268  Sum_probs=70.4

Q ss_pred             CeEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEc---cCCCchHHHHHHHHHhhcCc---eEEEEecCC-cCchhhhh
Q 028883           59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILP---PHQNCKEALSYALSAKERGI---KIIIVGDGV-EAHLSGVA  131 (202)
Q Consensus        59 ~~V~IimGS~SD~~v~~~a~~~L~~~gi~~ev~V~S---aHRtp~~l~~~~~~~~~~g~---~ViIa~AG~-aa~Lpgvv  131 (202)
                      .++.||++....-...++..+.|+..|+.+.+.+.+   .+.+.+.+.+..+.+.+.++   ++||++.|+ ..-+++++
T Consensus        32 ~~~livtd~~~~~~~~~~v~~~L~~~gi~~~~~~~~~~e~~~~~~~v~~~~~~~~~~~~~r~d~IIavGGGsv~D~aK~i  111 (358)
T PRK00002         32 KKVAIVTDETVAPLYLEKLRASLEAAGFEVDVVVLPDGEQYKSLETLEKIYDALLEAGLDRSDTLIALGGGVIGDLAGFA  111 (358)
T ss_pred             CeEEEEECCchHHHHHHHHHHHHHhcCCceEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCCEEEEEcCcHHHHHHHHH
Confidence            479999998876678899999999999988765433   36677888898888877666   899998887 55678888


Q ss_pred             hh--ccCCcEEEecCC
Q 028883          132 AA--NSQILVIRVPLL  145 (202)
Q Consensus       132 A~--~T~~PVIgVP~~  145 (202)
                      |+  ....|+|.||+.
T Consensus       112 A~~~~~gip~i~IPTT  127 (358)
T PRK00002        112 AATYMRGIRFIQVPTT  127 (358)
T ss_pred             HHHhcCCCCEEEcCch
Confidence            84  567899999996

>cd08199 EEVS 2-epi-5-epi-valiolone synthase (EEVS)

Probab=96.77  E-value=0.012  Score=54.05  Aligned_cols=87  Identities=15%  Similarity=0.224  Sum_probs=71.6

Q ss_pred             CeEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEc---cCCCchHHHHHHHHHhhcCc----eEEEEecCC-cCchhhh
Q 028883           59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILP---PHQNCKEALSYALSAKERGI----KIIIVGDGV-EAHLSGV  130 (202)
Q Consensus        59 ~~V~IimGS~SD~~v~~~a~~~L~~~gi~~ev~V~S---aHRtp~~l~~~~~~~~~~g~----~ViIa~AG~-aa~Lpgv  130 (202)
                      .++.||++....--+.++..+.|+..|++++.-+..   .+.+.+.+.+..+.+.+.++    ++||++.|+ ..-++++
T Consensus        27 ~~~lvVtd~~v~~~~~~~v~~~l~~~g~~~~~~v~~~~e~~~s~~~v~~~~~~l~~~~~~r~~d~IVaiGGG~v~D~ak~  106 (354)
T cd08199          27 GRRFVVVDQNVDKLYGKKLREYFAHHNIPLTILVLRAGEAAKTMDTVLKIVDALDAFGISRRREPVLAIGGGVLTDVAGL  106 (354)
T ss_pred             CeEEEEECccHHHHHHHHHHHHHHhcCCceEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCCCEEEEECCcHHHHHHHH
Confidence            578999977665557788899999999988765554   58889999999988887777    999988886 7789999


Q ss_pred             hhh--ccCCcEEEecCC
Q 028883          131 AAA--NSQILVIRVPLL  145 (202)
Q Consensus       131 vA~--~T~~PVIgVP~~  145 (202)
                      +|+  ....|.|.||+.
T Consensus       107 ~A~~~~rg~p~i~VPTT  123 (354)
T cd08199         107 AASLYRRGTPYVRIPTT  123 (354)
T ss_pred             HHHHhcCCCCEEEEcCc
Confidence            994  678999999995

2-epi-5-epi-valiolone synthases catalyze the cyclization of sedoheptulose 7-phosphate to 2-epi-5-epi-valiolone in the biosynthesis of C(7)N-aminocyclitol-containing products. The cyclization product, 2-epi-5-epi-valiolone ((2S,3S,4S,5R)-5-(hydroxymethyl)cyclohexanon-2,3,4,5-tetrol), is a precursor of the valienamine moiety. The valienamine unit is responsible for their biological activities as various glycosidic hydrolases inhibitors. Two important microbial secondary metabolites, i.e., validamycin and acarbose, are used in agricultural and biomedical applications. Validamycine A is an antifungal antibiotic which has a strong trehalase inhibitory activity and has been used to control sheath blight disease in rice caused by Rhizoctonia solani. Acarbose is an alpha-glucosidase inhibitor used for the treatment of type II insulin-independent diabetes. Salbostatin produced by Streptomyces albus also belongs to this family. It exhibits s

>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP)

Probab=96.77  E-value=0.0088  Score=54.30  Aligned_cols=87  Identities=13%  Similarity=0.142  Sum_probs=66.5

Q ss_pred             CeEEEEecCCCCHHHHHHHHHHHHHhCCCeEE-EEEccCCCchHHHHHHHHHhhcCceEEEEecCCcC-chhhhhhhc--
Q 028883           59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEI-KILPPHQNCKEALSYALSAKERGIKIIIVGDGVEA-HLSGVAAAN--  134 (202)
Q Consensus        59 ~~V~IimGS~SD~~v~~~a~~~L~~~gi~~ev-~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa-~LpgvvA~~--  134 (202)
                      .++.||+++.+-  ..++..+.|++.|+.+.+ .-...|-+.+.+.+.++.+++.++++||++-|++. -++.++|..  
T Consensus        24 ~~~livtd~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGs~~D~aK~ia~~~~  101 (367)
T cd08182          24 KRVLLVTGPRSA--IASGLTDILKPLGTLVVVFDDVQPNPDLEDLAAGIRLLREFGPDAVLAVGGGSVLDTAKALAALLG  101 (367)
T ss_pred             CeEEEEeCchHH--HHHHHHHHHHHcCCeEEEEcCcCCCcCHHHHHHHHHHHHhcCcCEEEEeCCcHHHHHHHHHHHHHh
Confidence            479999987774  667888899999976543 23456888899999999998889999999999854 344455543  


Q ss_pred             --------------------cCCcEEEecCCCC
Q 028883          135 --------------------SQILVIRVPLLSE  147 (202)
Q Consensus       135 --------------------T~~PVIgVP~~~~  147 (202)
                                          ..+|+|.||+..+
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTtag  134 (367)
T cd08182         102 APREALEDLRIRNKERENRERALPLIAIPTTAG  134 (367)
T ss_pred             CCCcHHHHHHHhccCCCCCCCCCCEEEeCCCCC
Confidence                                3589999999753

Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor. NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes. Members of this family are only found in bacteria.

>cd08197 DOIS 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics

Probab=96.74  E-value=0.012  Score=53.96  Aligned_cols=87  Identities=18%  Similarity=0.249  Sum_probs=70.3

Q ss_pred             CeEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEc---cCCCchHHHHHHHHHhhcCce---EEEEecCC-cCchhhhh
Q 028883           59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILP---PHQNCKEALSYALSAKERGIK---IIIVGDGV-EAHLSGVA  131 (202)
Q Consensus        59 ~~V~IimGS~SD~~v~~~a~~~L~~~gi~~ev~V~S---aHRtp~~l~~~~~~~~~~g~~---ViIa~AG~-aa~Lpgvv  131 (202)
                      .+|.||+++.......++..+.|++.|+++++.+..   .+.+.+.+.+..+.+.+.+++   +||++.|+ ..-+++++
T Consensus        24 ~rvlvVtd~~v~~~~~~~l~~~L~~~g~~~~~~~~~~~e~~k~~~~v~~~~~~~~~~~~dr~~~IIAvGGGsv~D~ak~~  103 (355)
T cd08197          24 DKYLLVTDSNVEDLYGHRLLEYLREAGAPVELLSVPSGEEHKTLSTLSDLVERALALGATRRSVIVALGGGVVGNIAGLL  103 (355)
T ss_pred             CeEEEEECccHHHHHHHHHHHHHHhcCCceEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCcEEEEECCcHHHHHHHHH
Confidence            478899987655557888999999999988776654   467778899998888888887   99988887 56788888


Q ss_pred             hhc--cCCcEEEecCC
Q 028883          132 AAN--SQILVIRVPLL  145 (202)
Q Consensus       132 A~~--T~~PVIgVP~~  145 (202)
                      |+.  ...|+|.||+.
T Consensus       104 A~~~~rgip~I~IPTT  119 (355)
T cd08197         104 AALLFRGIRLVHIPTT  119 (355)
T ss_pred             HHHhccCCCEEEecCc
Confidence            864  57899999995

2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes neomycin, kanamycin, gentamicin, and ribostamycin. They are important antibacterial agents. DOIS is a homologue of the dehydroquinate synthase which catalyzes the cyclization of 3-deoxy-D-arabino-heputulosonate-7-phosphate to dehydroquinate (DHQ) in the shikimate pathway.

>cd08174 G1PDH-like Glycerol-1-phosphate dehydrogenase-like

Probab=96.65  E-value=0.018  Score=51.63  Aligned_cols=83  Identities=12%  Similarity=0.028  Sum_probs=58.4

Q ss_pred             CeEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhc-CceEEEEecCC-cCchhhhhhhccC
Q 028883           59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKER-GIKIIIVGDGV-EAHLSGVAAANSQ  136 (202)
Q Consensus        59 ~~V~IimGS~SD~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~-g~~ViIa~AG~-aa~LpgvvA~~T~  136 (202)
                      .++.||++...    .++..+.|++.++ .++.+.. ..+-..+.+..+.++.. +.++||++.|+ ..-+++++|.+..
T Consensus        26 ~r~livtd~~~----~~~~~~~L~~~~~-~~~~~~~-~~~~~~~~~i~~~~~~~~~~d~iIaiGGGsv~D~aK~vA~~~~   99 (331)
T cd08174          26 GRVAVVSGPGV----GEQVAESLKTSFS-AEVEAVE-EVSNSDAEEIGARARSIPNVDAVVGIGGGKVIDVAKYAAFLRG   99 (331)
T ss_pred             CceEEEECCcH----HHHHHHHHHhccC-ceEEEec-CCCccCHHHHHHHHHhccCCCEEEEeCCcHHHHHHHHHHhhcC
Confidence            47999998776    7788888888777 3333332 23334444444444333 47999988887 6678999999999


Q ss_pred             CcEEEecCCCC
Q 028883          137 ILVIRVPLLSE  147 (202)
Q Consensus       137 ~PVIgVP~~~~  147 (202)
                      +|+|.||+..+
T Consensus       100 ~p~i~vPTt~~  110 (331)
T cd08174         100 IPLSVPTTNLN  110 (331)
T ss_pred             CCEEEecCccc
Confidence            99999999753

Glycerol-1-phosphate dehydrogenase-like. The proteins of this family have not been characterized. The protein sequences have high similarity with that of glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. This family is bacteria specific.

>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor

Probab=96.64  E-value=0.0049  Score=56.21  Aligned_cols=89  Identities=12%  Similarity=0.135  Sum_probs=68.7

Q ss_pred             CeEEEEecCCC-CHHHHHHHHHHHHHhCCCeEE-EEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCc-hhhhhhhc-
Q 028883           59 PIVGIIMESDL-DLPVMNDAARTLSDFGVPYEI-KILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAH-LSGVAAAN-  134 (202)
Q Consensus        59 ~~V~IimGS~S-D~~v~~~a~~~L~~~gi~~ev-~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~-LpgvvA~~-  134 (202)
                      .+|.||+|..- +....++....|++-|+.+.+ .-.-.|-+.+.+.+.++.+++.++++||++-|++.. .+..+|.. 
T Consensus        27 ~~~livt~~~~~~~~~~~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGs~iD~aK~ia~~~  106 (376)
T cd08193          27 KRVLVVTDPGILKAGLIDPLLASLEAAGIEVTVFDDVEADPPEAVVEAAVEAARAAGADGVIGFGGGSSMDVAKLVAVLA  106 (376)
T ss_pred             CeEEEEcCcchhhCccHHHHHHHHHHcCCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHHH
Confidence            47888888642 455788999999999987653 223478889999999999988889999999999764 44465553 


Q ss_pred             -----------------cCCcEEEecCCCC
Q 028883          135 -----------------SQILVIRVPLLSE  147 (202)
Q Consensus       135 -----------------T~~PVIgVP~~~~  147 (202)
                                       ..+|+|.||+..+
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~p~i~IPTTag  136 (376)
T cd08193         107 GSDQPLADMYGVDLVAGPRLPLILVPTTAG  136 (376)
T ss_pred             HCCCCHHHHhCCCccCCCCCCEEEeCCCCc
Confidence                             3689999999753

5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.

>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like

Probab=96.63  E-value=0.012  Score=53.77  Aligned_cols=88  Identities=17%  Similarity=0.146  Sum_probs=68.1

Q ss_pred             CeEEEEecCCCC-HHHHHHHHHHHHHhCCCeEEE-EEccCCCchHHHHHHHHHhhcCceEEEEecCCcCc-hhhhhhh--
Q 028883           59 PIVGIIMESDLD-LPVMNDAARTLSDFGVPYEIK-ILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAH-LSGVAAA--  133 (202)
Q Consensus        59 ~~V~IimGS~SD-~~v~~~a~~~L~~~gi~~ev~-V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~-LpgvvA~--  133 (202)
                      .++.||+|..+- ....++..+.|++.|+.+.+- -...|-+.+.+.+.++.++..++++||++-|++.. .+-++|.  
T Consensus        24 ~r~livt~~~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS~~D~AKaia~~~  103 (375)
T cd08194          24 KRPLIVTDKVMVKLGLVDKLTDSLKKEGIESAIFDDVVSEPTDESVEEGVKLAKEGGCDVIIALGGGSPIDTAKAIAVLA  103 (375)
T ss_pred             CeEEEEcCcchhhcchHHHHHHHHHHCCCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHHH
Confidence            479999987654 347889999999999976542 35678888889999999988899999999998654 3334442  


Q ss_pred             ----------------ccCCcEEEecCCC
Q 028883          134 ----------------NSQILVIRVPLLS  146 (202)
Q Consensus       134 ----------------~T~~PVIgVP~~~  146 (202)
                                      ...+|+|.||+..
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~P~i~IPTta  132 (375)
T cd08194         104 TNGGSIRDYKGPRIVDKPGLPLIAIPTTA  132 (375)
T ss_pred             hCCCCHHHHhCcccccCCCCCEEEECCCC
Confidence                            2468999999964

Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.

>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase

Probab=96.53  E-value=0.01  Score=54.37  Aligned_cols=88  Identities=16%  Similarity=0.183  Sum_probs=66.2

Q ss_pred             CeEEEEecCCC-C-HHHHHHHHHHHHHhCCCeEEEE-EccCCCchHHHHHHHHHhhcCceEEEEecCCcCc-hhhhhhhc
Q 028883           59 PIVGIIMESDL-D-LPVMNDAARTLSDFGVPYEIKI-LPPHQNCKEALSYALSAKERGIKIIIVGDGVEAH-LSGVAAAN  134 (202)
Q Consensus        59 ~~V~IimGS~S-D-~~v~~~a~~~L~~~gi~~ev~V-~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~-LpgvvA~~  134 (202)
                      .++.||++..+ + ....++..+.|++.|+.+.+.- ...+.+.+.+.+.++.+++.++++||++.|++.. .+..+|..
T Consensus        27 kr~livtd~~~~~~~g~~~~v~~~L~~~gi~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS~iD~aK~ia~~  106 (383)
T cd08186          27 SKVLLVTGKSAYKKSGAWDKVEPALDEHGIEYVLYNKVTPNPTVDQVDEAAKLGREFGAQAVIAIGGGSPIDSAKSAAIL  106 (383)
T ss_pred             CEEEEEcCccHHhhcChHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCccHHHHHHHHHHH
Confidence            47999998664 3 5567899999999999765432 3466788999999999988899999999998643 34344432


Q ss_pred             -------------------cCCcEEEecCCC
Q 028883          135 -------------------SQILVIRVPLLS  146 (202)
Q Consensus       135 -------------------T~~PVIgVP~~~  146 (202)
                                         ..+|+|.||+..
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~P~iaIPTTa  137 (383)
T cd08186         107 LEHPGKTARDLYEFKFTPEKALPLIAINLTH  137 (383)
T ss_pred             HhCCCCcHHHHhCCCcccCCCCCEEEEeCCC
Confidence                               257999999964

Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.

>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria

Probab=96.53  E-value=0.012  Score=53.87  Aligned_cols=88  Identities=16%  Similarity=0.193  Sum_probs=66.0

Q ss_pred             CeEEEEecCCCCH-HHHHHHHHHHHHhCCCeEEE-EEccCCCchHHHHHHHHHhhcCceEEEEecCCcCch-hhhhh---
Q 028883           59 PIVGIIMESDLDL-PVMNDAARTLSDFGVPYEIK-ILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHL-SGVAA---  132 (202)
Q Consensus        59 ~~V~IimGS~SD~-~v~~~a~~~L~~~gi~~ev~-V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~L-pgvvA---  132 (202)
                      .++.||+|..... ...+++.+.|++.|+.+.+- =+..|-+-+.+++.++.+++.++++||++.|++..= +=.+|   
T Consensus        29 ~~~lvv~~~~~~~~~~~~~v~~~L~~~~~~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGGS~iD~aK~ia~~~  108 (377)
T cd08176          29 KKALIVTDKGLVKIGVVEKVTDVLDEAGIDYVIYDGVKPNPTITNVKDGLAVFKKEGCDFIISIGGGSPHDCAKAIGIVA  108 (377)
T ss_pred             CeEEEECCchHhhcCcHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHHHH
Confidence            3788998876554 68889999999999976542 134588888999999999888999999999987621 11111   


Q ss_pred             ---------------hccCCcEEEecCCC
Q 028883          133 ---------------ANSQILVIRVPLLS  146 (202)
Q Consensus       133 ---------------~~T~~PVIgVP~~~  146 (202)
                                     -...+|+|.||+..
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~P~i~IPTta  137 (377)
T cd08176         109 TNGGDIRDYEGVAKSKKPAVPIVAINTTA  137 (377)
T ss_pred             hCCCCHHHHhCcCccCCCCCCEEEeCCCC
Confidence                           12568999999964

Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to

>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process

Probab=96.51  E-value=0.014  Score=53.39  Aligned_cols=88  Identities=16%  Similarity=0.074  Sum_probs=66.2

Q ss_pred             CeEEEEecCCCC--HHHHHHHHHHHHHhCCCeEE-EEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhh-hhhhc
Q 028883           59 PIVGIIMESDLD--LPVMNDAARTLSDFGVPYEI-KILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSG-VAAAN  134 (202)
Q Consensus        59 ~~V~IimGS~SD--~~v~~~a~~~L~~~gi~~ev-~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~Lpg-vvA~~  134 (202)
                      .++.||+|..+-  ....++..+.|++.|+.+.+ .-..+|-+.+.+.+.++.++..++++||++.|++..=.+ .++..
T Consensus        29 ~r~livt~~~~~~~~~~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS~iD~aK~ia~~  108 (382)
T cd08187          29 KKVLLVYGGGSIKKNGLYDRVIASLKEAGIEVVELGGVEPNPRLETVREGIELCKEEKVDFILAVGGGSVIDSAKAIAAG  108 (382)
T ss_pred             CEEEEEeCCcHHHhcCcHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHHcCCCEEEEeCChHHHHHHHHHHhH
Confidence            479999986554  35678899999999986543 223467778899999988888899999999998764333 44442


Q ss_pred             ------------------cCCcEEEecCCC
Q 028883          135 ------------------SQILVIRVPLLS  146 (202)
Q Consensus       135 ------------------T~~PVIgVP~~~  146 (202)
                                        ..+|+|.||+..
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~~P~iaIPTTa  138 (382)
T cd08187         109 APYDGDVWDFFTGKAKIEKALPVGTVLTLA  138 (382)
T ss_pred             hhCCCCHHHHhcccCCCCCCCCEEEEeCCC
Confidence                              368999999964

The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.

>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like

Probab=96.40  E-value=0.015  Score=53.03  Aligned_cols=88  Identities=18%  Similarity=0.245  Sum_probs=65.3

Q ss_pred             CeEEEEecCCCC-HHHHHHHHHHHHHhCCCeEEE-EEccCCCchHHHHHHHHHhhcCceEEEEecCCcCc-hhhhhhhcc
Q 028883           59 PIVGIIMESDLD-LPVMNDAARTLSDFGVPYEIK-ILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAH-LSGVAAANS  135 (202)
Q Consensus        59 ~~V~IimGS~SD-~~v~~~a~~~L~~~gi~~ev~-V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~-LpgvvA~~T  135 (202)
                      .+|.|++|.... ....++..+.|++.|+.+.+. -.-.|-+.+.+.+.++.+.+.++++||++.|++.. .+-.+|...
T Consensus        27 ~~~lvvt~~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~d~IIaiGGGS~~D~aK~ia~~~  106 (374)
T cd08189          27 KKVLIVTDKGLVKLGLLDKVLEALEGAGIEYAVYDGVPPDPTIENVEAGLALYRENGCDAILAVGGGSVIDCAKAIAARA  106 (374)
T ss_pred             CeEEEEeCcchhhcccHHHHHHHHHhcCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCccHHHHHHHHHHHH
Confidence            479999987643 236788999999999976532 23467888889999999988899999999998653 333444332


Q ss_pred             -------------------CCcEEEecCCC
Q 028883          136 -------------------QILVIRVPLLS  146 (202)
Q Consensus       136 -------------------~~PVIgVP~~~  146 (202)
                                         .+|+|.||+..
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~p~i~VPTta  136 (374)
T cd08189         107 ANPKKSLRKLTGLLKVKKPLPPLFAIPTTA  136 (374)
T ss_pred             hCCCCCHHHHhCccccCCCCCCEEEEECCC
Confidence                               27999999974

Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown.

>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD)

Probab=96.38  E-value=0.017  Score=52.56  Aligned_cols=88  Identities=16%  Similarity=0.186  Sum_probs=67.5

Q ss_pred             CeEEEEecCCC-C-HHHHHHHHHHHHHhCCCeEEE-EEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhh-hhhh-
Q 028883           59 PIVGIIMESDL-D-LPVMNDAARTLSDFGVPYEIK-ILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSG-VAAA-  133 (202)
Q Consensus        59 ~~V~IimGS~S-D-~~v~~~a~~~L~~~gi~~ev~-V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~Lpg-vvA~-  133 (202)
                      .++.||+|..+ . ....++..+.|++.|+.+.+. -...+-+-+.+.+.++.+++.++++||++.|++..=.+ .+|. 
T Consensus        26 ~r~lvVt~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGGSviD~aK~ia~~  105 (357)
T cd08181          26 KRALIVTGKSSAKKNGSLDDVTKALEELGIEYEIFDEVEENPSLETIMEAVEIAKKFNADFVIGIGGGSPLDAAKAIAVL  105 (357)
T ss_pred             CEEEEEeCCchHhhcCcHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHH
Confidence            47999998776 3 446788999999999976542 24468888899999999999999999999999764332 4432 


Q ss_pred             ----------------ccCCcEEEecCCC
Q 028883          134 ----------------NSQILVIRVPLLS  146 (202)
Q Consensus       134 ----------------~T~~PVIgVP~~~  146 (202)
                                      ...+|+|.||+..
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~P~i~VPTta  134 (357)
T cd08181         106 IKNPDLKVELYFRSKYLKALPVVAIPTTA  134 (357)
T ss_pred             HhCCCcHHHHhcccccCCCCCEEEEeCCC
Confidence                            2368999999975

1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.

>TIGR02638 lactal_redase lactaldehyde reductase

Probab=96.34  E-value=0.019  Score=52.66  Aligned_cols=89  Identities=16%  Similarity=0.214  Sum_probs=65.9

Q ss_pred             CeEEEEecCCCCH-HHHHHHHHHHHHhCCCeEEE-EEccCCCchHHHHHHHHHhhcCceEEEEecCCcCc-hhhhhhh--
Q 028883           59 PIVGIIMESDLDL-PVMNDAARTLSDFGVPYEIK-ILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAH-LSGVAAA--  133 (202)
Q Consensus        59 ~~V~IimGS~SD~-~v~~~a~~~L~~~gi~~ev~-V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~-LpgvvA~--  133 (202)
                      .+|.||+|..... ...++..+.|++.|+.+++. =...+.+.+.+.+.++.+.+.++++||++.|++.. .+=.+|.  
T Consensus        30 ~r~lvvt~~~~~~~g~~~~v~~~L~~~~i~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IiaiGGGSviD~aKaia~~~  109 (379)
T TIGR02638        30 KKALVVTDKDLIKFGVADKVTDLLDEAGIAYELFDEVKPNPTITVVKAGVAAFKASGADYLIAIGGGSPIDTAKAIGIIS  109 (379)
T ss_pred             CEEEEEcCcchhhccchHHHHHHHHHCCCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCChHHHHHHHHHHHHH
Confidence            4789999865433 37889999999999976542 13467888999999999988899999999998754 2212221  


Q ss_pred             ------------------ccCCcEEEecCCCC
Q 028883          134 ------------------NSQILVIRVPLLSE  147 (202)
Q Consensus       134 ------------------~T~~PVIgVP~~~~  147 (202)
                                        ...+|+|.||+..+
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~P~i~IPTTag  141 (379)
T TIGR02638       110 NNPEFADVRSLEGVAPTKKPGVPIIAIPTTAG  141 (379)
T ss_pred             hCCCCCCHHHhhCCCccCCCCCCEEEECCCCc
Confidence                              13479999999753

This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.

>cd08192 Fe-ADH7 Iron-containing alcohol dehydrogenases-like, involved in the linear alkylbenzenesulfonate (LAS) degradation pathway

Probab=96.32  E-value=0.017  Score=52.49  Aligned_cols=89  Identities=18%  Similarity=0.162  Sum_probs=66.5

Q ss_pred             CeEEEEecCCC-CHHHHHHHHHHHHHhCCCeEEE-EEccCCCchHHHHHHHHHhhcCceEEEEecCCcCc-hhhhhhhc-
Q 028883           59 PIVGIIMESDL-DLPVMNDAARTLSDFGVPYEIK-ILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAH-LSGVAAAN-  134 (202)
Q Consensus        59 ~~V~IimGS~S-D~~v~~~a~~~L~~~gi~~ev~-V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~-LpgvvA~~-  134 (202)
                      .++.||+|... +....++..+.|++-|+++.+- -...|-+-+.+.+.++.+++.++++||++-|++.. ++..+|.. 
T Consensus        25 ~~~liv~~~~~~~~~~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~d~IIaiGGGSviD~aK~ia~~~  104 (370)
T cd08192          25 KRPLIVTDPGLAALGLVARVLALLEDAGLAAALFDEVPPNPTEAAVEAGLAAYRAGGCDGVIAFGGGSALDLAKAVALMA  104 (370)
T ss_pred             CeEEEEcCcchhhCccHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHHH
Confidence            37888887544 3447899999999999976542 24578888889999999988889999999998643 33344443 


Q ss_pred             ---------------------cCCcEEEecCCCC
Q 028883          135 ---------------------SQILVIRVPLLSE  147 (202)
Q Consensus       135 ---------------------T~~PVIgVP~~~~  147 (202)
                                           ..+|+|.||+..+
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTtag  138 (370)
T cd08192         105 GHPGPLWDYEDIEGGWPRITDAIPPLIAIPTTAG  138 (370)
T ss_pred             hCCCCHHHHhcccccccccCCCCCCEEEecCCCc
Confidence                                 2489999999753

NAD-dependent iron-containing alcohol dehydrogenase-like. Proteins in this family are NAD-dependent alcohol dehydrogenases which are involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. They catalyze the oxidation of beta-hydroxy CoA ester to beta-oxo CoA ester, which then be subject to CoA-dependent thiolysis to yield acetyl-CoA and 6-C8-SPC-CoA. The major laundry surfactant in worldwide use is commercial linear alkylbenzenesulfonate (LAS) which contains 20 congeners of linear alkanes (C10 to C13). LAS is fully biodegradable in oxic environments. Degradation involves microbial communities. Parvibaculum lavamentivorans DS-1T is a representative member of many heterotrophic, LAS-degrading communities, in which it catalyzes the first steps of LAS degradation. Strain DS-1T is a small heterotrophic bacterium able to omega-oxygenate the comm

>PLN02834 3-dehydroquinate synthase

Probab=96.29  E-value=0.032  Score=52.77  Aligned_cols=87  Identities=16%  Similarity=0.226  Sum_probs=69.4

Q ss_pred             CeEEEEecCCCCHHHHHHHHHHHHHhCCCeEE--EEEc---cCCCchHHHHHHHHHhhcCce---EEEEecCC-cCchhh
Q 028883           59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEI--KILP---PHQNCKEALSYALSAKERGIK---IIIVGDGV-EAHLSG  129 (202)
Q Consensus        59 ~~V~IimGS~SD~~v~~~a~~~L~~~gi~~ev--~V~S---aHRtp~~l~~~~~~~~~~g~~---ViIa~AG~-aa~Lpg  129 (202)
                      .+|.||++....--+.++..+.|+.-|+++++  .+..   .+++.+.+.+.++.+.+.+++   +||++.|+ ..-+++
T Consensus       101 ~rvlIVtD~~v~~~~~~~v~~~L~~~g~~~~v~~~v~~~gE~~ksl~~v~~~~~~l~~~~~dr~~~VIAiGGGsv~D~ak  180 (433)
T PLN02834        101 KRVLVVTNETVAPLYLEKVVEALTAKGPELTVESVILPDGEKYKDMETLMKVFDKALESRLDRRCTFVALGGGVIGDMCG  180 (433)
T ss_pred             CEEEEEECccHHHHHHHHHHHHHHhcCCceEEEEEEecCCcCCCCHHHHHHHHHHHHhcCCCcCcEEEEECChHHHHHHH
Confidence            57999998876666888999999999987665  3433   467888888888888877776   99999887 667888


Q ss_pred             hhhh--ccCCcEEEecCC
Q 028883          130 VAAA--NSQILVIRVPLL  145 (202)
Q Consensus       130 vvA~--~T~~PVIgVP~~  145 (202)
                      ++|+  +-..|+|.||+.
T Consensus       181 ~~A~~y~rgiplI~VPTT  198 (433)
T PLN02834        181 FAAASYQRGVNFVQIPTT  198 (433)
T ss_pred             HHHHHhcCCCCEEEECCc
Confidence            8875  457899999995

>cd08178 AAD_C C-terminal alcohol dehydrogenase domain of the acetaldehyde dehydrogenase-alcohol dehydrogenase bifunctional two-domain protein (AAD)

Probab=96.28  E-value=0.02  Score=52.83  Aligned_cols=74  Identities=14%  Similarity=0.033  Sum_probs=55.5

Q ss_pred             CeEEEEecCCC-CHHHHHHHHHHHHHhCCCeEEE-EEccCCCchHHHHHHHHHhhcCceEEEEecCCcCc-hhhhhh
Q 028883           59 PIVGIIMESDL-DLPVMNDAARTLSDFGVPYEIK-ILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAH-LSGVAA  132 (202)
Q Consensus        59 ~~V~IimGS~S-D~~v~~~a~~~L~~~gi~~ev~-V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~-LpgvvA  132 (202)
                      .+|.||++... +....++..+.|++.|+.+.+. =...+-+.+.+.+.++.+.+.++++||++.|++.. ++..+|
T Consensus        22 ~k~liVtd~~~~~~g~~~~v~~~L~~~gi~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS~iD~AK~iA   98 (398)
T cd08178          22 KRAFIVTDRFMVKLGYVDKVIDVLKRRGVETEVFSDVEPDPSLETVRKGLELMNSFKPDTIIALGGGSPMDAAKIMW   98 (398)
T ss_pred             CeEEEEcChhHHhCccHHHHHHHHHHCCCeEEEecCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCccHHHHHHHHH
Confidence            47889987543 4458889999999999876532 24467888899999999988899999999998643 333444

Alcohol dehydrogenase domain located on the C-terminal of a bifunctional two-domain protein. The N-terminal of the protein contains an acetaldehyde-CoA dehydrogenase domain. This protein is involved in pyruvate metabolism. Pyruvate is converted to acetyl-CoA and formate by pyruvate formate-lysase (PFL). Under anaerobic condition, acetyl-CoA is reduced to acetaldehyde and ethanol by this two-domain protein. Acetyl-CoA is first converted into an enzyme-bound thiohemiacetal by the N-terminal acetaldehyde dehydrogenase domain. The enzyme-bound thiohemiacetal is subsequently reduced by the C-terminal NAD+-dependent alcohol dehydrogenase domain. In E. coli, this protein is called AdhE and was shown pyruvate formate-lysase (PFL) deactivase activity, which is involved in the inactivation of PFL, a key enzyme in anaerobic metabolism. In Escherichi

>PF00465 Fe-ADH: Iron-containing alcohol dehydrogenase ; InterPro: IPR001670 Alcohol dehydrogenase (1

Probab=96.27  E-value=0.013  Score=52.97  Aligned_cols=88  Identities=16%  Similarity=0.193  Sum_probs=66.3

Q ss_pred             eEEEEecCCCCH-HHHHHHHHHHHHhCCCeEEEE-EccCCCchHHHHHHHHHhhcCceEEEEecCCcCc-hhhhhhhcc-
Q 028883           60 IVGIIMESDLDL-PVMNDAARTLSDFGVPYEIKI-LPPHQNCKEALSYALSAKERGIKIIIVGDGVEAH-LSGVAAANS-  135 (202)
Q Consensus        60 ~V~IimGS~SD~-~v~~~a~~~L~~~gi~~ev~V-~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~-LpgvvA~~T-  135 (202)
                      +|.||++..-.. +..++....|++-|+.+.+.- ...|=+.+.+.+.++.+++.++++||++-|++.- .+=+++... 
T Consensus        23 r~lvVt~~~~~~~~~~~~v~~~L~~~~i~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS~~D~aK~va~~~~  102 (366)
T PF00465_consen   23 RVLVVTDPSLSKSGLVDRVLDALEEAGIEVQVFDGVGPNPTLEDVDEAAEQARKFGADCIIAIGGGSVMDAAKAVALLLA  102 (366)
T ss_dssp             EEEEEEEHHHHHHTHHHHHHHHHHHTTCEEEEEEEESSS-BHHHHHHHHHHHHHTTSSEEEEEESHHHHHHHHHHHHHHT
T ss_pred             CEEEEECchHHhCccHHHHHHHHhhCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCcHHHHHHhhcc
Confidence            899999883222 268899999999999875533 6899999999999999999999999999999642 222222222 


Q ss_pred             ------------------CCcEEEecCCCC
Q 028883          136 ------------------QILVIRVPLLSE  147 (202)
Q Consensus       136 ------------------~~PVIgVP~~~~  147 (202)
                                        .+|+|.||+..+
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~p~i~IPTt~g  132 (366)
T PF00465_consen  103 NPGDLRDLLGKGPPPTKPALPLIAIPTTAG  132 (366)
T ss_dssp             SSSCGGGGGCECSCCSS--SEEEEEESSSS
T ss_pred             CCCcHHHHHhhccccccCCCcEEEeeCCcc
Confidence                              289999999754

1.1.1 from EC) (ADH) catalyzes the reversible oxidation of ethanol to acetaldehyde with the concomitant reduction of NAD. Currently three, structurally and catalytically, different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Iron-containing ADH's have been found in yeast (gene ADH4) [], as well as in Zymomonas mobilis (gene adhB) []. These two iron-containing ADH's are closely related to the following enzymes: Escherichia coli propanediol oxidoreductase (1.1.1.77 from EC) (gene fucO) [], an enzyme involved in the metabolism of fucose and which also seems to contain ferrous ion(s). Clostridium acetobutylicum NADPH- and NADH-dependent butanol dehydrogenases (1.1.1 from EC) (genes adh1, bdhA and bdhB) [], an enzyme which has activity using butanol and ethanol as substrates. E. coli adhE [], an iron-dependent enzyme which harbor three different activities: alcohol dehydrogenase, acetaldehyde dehydrogenase (acetylating) (1.2.1.10 from EC) and pyruvate-formate-lyase deactivase. Bacterial glycerol dehydrogenase (1.1.1.6 from EC) (gene gldA or dhaD) []. Clostridium kluyveri NAD-dependent 4-hydroxybutyrate dehydrogenase (4hbd) (1.1.1.61 from EC). Citrobacter freundii and Klebsiella pneumoniae 1,3-propanediol dehydrogenase (1.1.1.202 from EC) (gene dhaT). Bacillus methanolicus NAD-dependent methanol dehydrogenase (1.1.1.244 from EC) []. E. coli and Salmonella typhimurium ethanolamine utilization protein eutG. E. coli hypothetical protein yiaY. ; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1RRM_A 2BL4_A 2BI4_A 3BFJ_R 1KQ3_A 1JQ5_A 1JPU_A 1JQA_A 3JZD_A 3UHJ_A ....

>cd08172 GlyDH-like1 Glycerol dehydrogenases-like

Probab=96.18  E-value=0.013  Score=53.01  Aligned_cols=86  Identities=19%  Similarity=0.024  Sum_probs=64.4

Q ss_pred             CeEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCc-CchhhhhhhccCC
Q 028883           59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVE-AHLSGVAAANSQI  137 (202)
Q Consensus        59 ~~V~IimGS~SD~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~a-a~LpgvvA~~T~~  137 (202)
                      .++.||++..+=....++..+.|+..++.+.+ .... .+-+.+++.++.+.+.++++||++-|++ --++..+|....+
T Consensus        24 ~~~liv~d~~~~~~~~~~l~~~L~~~~~~~~~-~~~~-p~~~~v~~~~~~~~~~~~D~iIavGGGs~~D~aK~ia~~~~~  101 (347)
T cd08172          24 KRPLIVTGPRSWAAAKPYLPESLAAGEAFVLR-YDGE-CSEENIERLAAQAKENGADVIIGIGGGKVLDTAKAVADRLGV  101 (347)
T ss_pred             CeEEEEECHHHHHHHHHHHHHHHhcCeEEEEE-eCCC-CCHHHHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHHHhCC
Confidence            47899998766344555666666555664321 1123 7888899999999888999999998884 5688889888899


Q ss_pred             cEEEecCCC
Q 028883          138 LVIRVPLLS  146 (202)
Q Consensus       138 PVIgVP~~~  146 (202)
                      |+|.||+..
T Consensus       102 p~i~VPTT~  110 (347)
T cd08172         102 PVITVPTLA  110 (347)
T ss_pred             CEEEecCcc
Confidence            999999974

Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.

>cd08177 MAR Maleylacetate reductase is involved in many aromatic compounds degradation pathways of aerobic microbes

Probab=96.10  E-value=0.018  Score=51.89  Aligned_cols=87  Identities=16%  Similarity=0.138  Sum_probs=66.0

Q ss_pred             CeEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcC-chhhhhhhccCC
Q 028883           59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEA-HLSGVAAANSQI  137 (202)
Q Consensus        59 ~~V~IimGS~SD~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa-~LpgvvA~~T~~  137 (202)
                      .++.||+|...--...++..+.|++.++. .+.-...|-+.+.+.+.++.+.+.++++||++.|++. -++.++|....+
T Consensus        24 ~~~livt~~~~~~~~~~~v~~~l~~~~~~-~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIaiGGGs~iD~aK~ia~~~~~  102 (337)
T cd08177          24 SRALVLTTPSLATKLAERVASALGDRVAG-TFDGAVMHTPVEVTEAAVAAAREAGADGIVAIGGGSTIDLAKAIALRTGL  102 (337)
T ss_pred             CeEEEEcChHHHHHHHHHHHHHhccCCcE-EeCCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHHHhcC
Confidence            37889998765444777888888876432 1222335777888888888888888999999998854 577788888899


Q ss_pred             cEEEecCCC
Q 028883          138 LVIRVPLLS  146 (202)
Q Consensus       138 PVIgVP~~~  146 (202)
                      |+|.||+..
T Consensus       103 p~i~IPTta  111 (337)
T cd08177         103 PIIAIPTTL  111 (337)
T ss_pred             CEEEEcCCc
Confidence            999999964

Maleylacetate reductases (MAR) play an important role in the degradation of aromatic compounds in aerobic microbes. In fungi and yeasts, the enzymes are involved in the catabolism of compounds such as phenol, tyrosine, benzoate, 4-hydroxybenzoate and resorcinol. In bacteria, the enzymes contribute to the degradation of resorcinol, 2,4-dihydroxybenzoate ([beta]-resorcylate) and 2,6-dihydroxybenzoate ([gamma]-resorcylate) via hydroxyquinol and maleylacetate. Maleylacetate reductases catalyze NADH- or NADPH-dependent reduction, at the carbon-carbon double bond, of maleylacetate or 2-chloromaleylacetate to 3-oxoadipate. In the case of 2-chloromaleylacetate, Maleylacetate reductases initially catalyses the NAD(P)H-dependent dechlorination to maleylacetate, which is then reduced to 3-oxoadipate. This enzyme is a homodimer. It is inhibited by thiol-blocking reagents such as p-

>cd08188 Fe-ADH4 Iron-containing alcohol dehydrogenases-like

Probab=96.06  E-value=0.034  Score=50.94  Aligned_cols=88  Identities=19%  Similarity=0.240  Sum_probs=62.4

Q ss_pred             CeEEEEecCCCC-HHHHHHHHHHHHHhCCCeEEEE-EccCCCchHHHHHHHHHhhcCceEEEEecCCcCchh----hhhh
Q 028883           59 PIVGIIMESDLD-LPVMNDAARTLSDFGVPYEIKI-LPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLS----GVAA  132 (202)
Q Consensus        59 ~~V~IimGS~SD-~~v~~~a~~~L~~~gi~~ev~V-~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~Lp----gvvA  132 (202)
                      .+|.||+|.... ....++..+.|++.|+.+.+.- ...+-+.+.+.+.++.+...++++||++.|++..=.    ++++
T Consensus        29 ~~~livt~~~~~~~~~~~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~d~IIaiGGGsviD~AK~ia~~~  108 (377)
T cd08188          29 KKVLLVSDPGVIKAGWVDRVIESLEEAGLEYVVFSDVSPNPRDEEVMAGAELYLENGCDVIIAVGGGSPIDCAKGIGIVA  108 (377)
T ss_pred             CeEEEEeCcchhhCccHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHHH
Confidence            478999986543 3467889999999998765421 234566777888888888888999999999864322    2222


Q ss_pred             hc---------------cCCcEEEecCCC
Q 028883          133 AN---------------SQILVIRVPLLS  146 (202)
Q Consensus       133 ~~---------------T~~PVIgVP~~~  146 (202)
                      .+               ..+|+|.||+..
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~p~i~IPTT~  137 (377)
T cd08188         109 SNGGHILDFEGVDKITRPLPPLICIPTTA  137 (377)
T ss_pred             HCCCCHHHHhCcccccCCCCCEEEECCCC
Confidence            21               147999999975

Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown.

>PRK15454 ethanol dehydrogenase EutG; Provisional

Probab=96.05  E-value=0.025  Score=52.44  Aligned_cols=89  Identities=12%  Similarity=0.109  Sum_probs=63.3

Q ss_pred             CeEEEEecCC-CCHHHHHHHHHHHHHhCCCeEEE-EEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhh----hhh
Q 028883           59 PIVGIIMESD-LDLPVMNDAARTLSDFGVPYEIK-ILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSG----VAA  132 (202)
Q Consensus        59 ~~V~IimGS~-SD~~v~~~a~~~L~~~gi~~ev~-V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~Lpg----vvA  132 (202)
                      .++.|+++.. ......++..+.|++-|+.+.+. -...+=+.+.+.+.++.+++.++++||++-|++.-=.+    ++.
T Consensus        50 ~~~lvv~~~~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~P~~~~v~~~~~~~r~~~~D~IiavGGGS~iD~AKaia~~~  129 (395)
T PRK15454         50 KHLFVMADSFLHQAGMTAGLTRSLAVKGIAMTLWPCPVGEPCITDVCAAVAQLRESGCDGVIAFGGGSVLDAAKAVALLV  129 (395)
T ss_pred             CEEEEEcCcchhhCccHHHHHHHHHHcCCeEEEECCCCCCcCHHHHHHHHHHHHhcCcCEEEEeCChHHHHHHHHHHHHH
Confidence            3566666532 34566899999999999977643 33456666889999999988999999999999753222    221


Q ss_pred             hc---------------cCCcEEEecCCCC
Q 028883          133 AN---------------SQILVIRVPLLSE  147 (202)
Q Consensus       133 ~~---------------T~~PVIgVP~~~~  147 (202)
                      .+               ..+|+|.||+..+
T Consensus       130 ~~~~~~~~~~~~~~~~~~~~P~iaIPTtaG  159 (395)
T PRK15454        130 TNPDSTLAEMSETSVLQPRLPLIAIPTTAG  159 (395)
T ss_pred             hCCCccHHHHhcccccCCCCCEEEECCCCc
Confidence            11               3579999999753

>cd08179 NADPH_BDH NADPH-dependent butanol dehydrogenase involved in the butanol and ethanol formation pathway in bacteria

Probab=95.98  E-value=0.045  Score=50.00  Aligned_cols=88  Identities=15%  Similarity=0.105  Sum_probs=65.3

Q ss_pred             CeEEEEecCCC--CHHHHHHHHHHHHHhCCCeEEE-EEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhh-hhhh-
Q 028883           59 PIVGIIMESDL--DLPVMNDAARTLSDFGVPYEIK-ILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSG-VAAA-  133 (202)
Q Consensus        59 ~~V~IimGS~S--D~~v~~~a~~~L~~~gi~~ev~-V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~Lpg-vvA~-  133 (202)
                      .++.||+|..+  .....++..+.|++.|+++.+. =...|-+.+.+.+.++.+.+.++++||++-|++.-=.+ .+|. 
T Consensus        24 ~r~livt~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGGSviD~AK~ia~~  103 (375)
T cd08179          24 KKAFIVTGGGSMKKFGFLDKVEAYLKEAGIEVEVFEGVEPDPSVETVLKGAEAMREFEPDWIIALGGGSPIDAAKAMWIF  103 (375)
T ss_pred             CeEEEEeCchHHHhCChHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCccHHHHHHHHHHH
Confidence            47899998654  3467789999999999976532 13468888999999999988899999999999653222 2221 


Q ss_pred             --------------------ccCCcEEEecCCC
Q 028883          134 --------------------NSQILVIRVPLLS  146 (202)
Q Consensus       134 --------------------~T~~PVIgVP~~~  146 (202)
                                          ...+|+|.||+..
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~p~iaIPTta  136 (375)
T cd08179         104 YEYPELTFEDIVKPFTLPELRNKARFCAIPSTS  136 (375)
T ss_pred             HhCCCcCHHHHhccccccccCCCCCEEEeCCCC
Confidence                                1247999999964

NADPH-dependent butanol dehydrogenase (BDH) is involved in the butanol and ethanol formation pathway of some bacteria. The fermentation process is characterized by an acid producing growth phase, followed by a solvent producing phase. The latter phase is associated with the induction of solventogenic enzymes such as butanol dehydrogenase. The activity of the enzymes require NADPH as cofactor, as well as divalent ions zinc or iron. This family is a member of the iron-containing alcohol dehydrogenase superfamily. Protein structure has a dehydroquinate synthase-like fold.

>cd08169 DHQ-like Dehydroquinate synthase-like which includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase

Probab=95.96  E-value=0.059  Score=49.12  Aligned_cols=85  Identities=20%  Similarity=0.158  Sum_probs=66.9

Q ss_pred             CeEEEEecCCCCHHHHHHHHHHHHH-hCCCeEEEEEc---cCCCchHHHHHHHHHhhcC---ceEEEEecCC-cCchhhh
Q 028883           59 PIVGIIMESDLDLPVMNDAARTLSD-FGVPYEIKILP---PHQNCKEALSYALSAKERG---IKIIIVGDGV-EAHLSGV  130 (202)
Q Consensus        59 ~~V~IimGS~SD~~v~~~a~~~L~~-~gi~~ev~V~S---aHRtp~~l~~~~~~~~~~g---~~ViIa~AG~-aa~Lpgv  130 (202)
                      .++.||++..-.-...++..+.|+. .++.+  .+.+   .+++.+.+.+..+.+.+.+   .++||++.|+ ..-++++
T Consensus        24 ~k~livtd~~v~~~~~~~v~~~L~~~~~~~~--~~~~~~e~~k~~~~v~~~~~~~~~~~~~r~d~IIaiGGGsv~D~ak~  101 (344)
T cd08169          24 DQYFFISDSGVADLIAHYIAEYLSKILPVHI--LVIEGGEEYKTFETVTRILERAIALGANRRTAIVAVGGGATGDVAGF  101 (344)
T ss_pred             CeEEEEECccHHHHHHHHHHHHHHhhcCceE--EEeCCCCCCCCHHHHHHHHHHHHHcCCCCCcEEEEECCcHHHHHHHH
Confidence            4789999887766788999999987 66643  4444   4778888888887777555   7899998887 5568999


Q ss_pred             hhh--ccCCcEEEecCC
Q 028883          131 AAA--NSQILVIRVPLL  145 (202)
Q Consensus       131 vA~--~T~~PVIgVP~~  145 (202)
                      +|+  +-..|.|.||+.
T Consensus       102 vA~~~~rgip~i~VPTT  118 (344)
T cd08169         102 VASTLFRGIAFIRVPTT  118 (344)
T ss_pred             HHHHhccCCcEEEecCC
Confidence            987  458899999995

Dehydroquinate synthase-like. This group contains dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. They exhibit the dehydroquinate synthase structural fold. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes ne

>cd08191 HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate

Probab=95.93  E-value=0.047  Score=50.18  Aligned_cols=86  Identities=22%  Similarity=0.245  Sum_probs=62.1

Q ss_pred             CeEEEEecCCCC-HHHHHHHHHHHHHhCCCeEEEEEcc---CCCchHHHHHHHHHhhcCceEEEEecCCcCc-hhhhhhh
Q 028883           59 PIVGIIMESDLD-LPVMNDAARTLSDFGVPYEIKILPP---HQNCKEALSYALSAKERGIKIIIVGDGVEAH-LSGVAAA  133 (202)
Q Consensus        59 ~~V~IimGS~SD-~~v~~~a~~~L~~~gi~~ev~V~Sa---HRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~-LpgvvA~  133 (202)
                      .+|.||++...- ....++..+.|++-|+.+++  .+-   +-+.+.+.+.++.+.+.++++||++.|++.. .+-.+|.
T Consensus        23 ~~~livt~~~~~~~~~~~~v~~~L~~~~~~~~~--f~~v~~~~~~~~v~~~~~~~~~~~~D~IIaiGGGS~iD~aK~ia~  100 (386)
T cd08191          23 SRALIVTDERMAGTPVFAELVQALAAAGVEVEV--FDGVLPDLPRSELCDAASAAARAGPDVIIGLGGGSCIDLAKIAGL  100 (386)
T ss_pred             CeEEEEECcchhhcchHHHHHHHHHHcCCeEEE--ECCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHH
Confidence            478999986654 47888999999999987653  332   3345556667777777789999999998653 3335544


Q ss_pred             cc------------------CCcEEEecCCC
Q 028883          134 NS------------------QILVIRVPLLS  146 (202)
Q Consensus       134 ~T------------------~~PVIgVP~~~  146 (202)
                      ..                  .+|+|.||+..
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~p~i~IPTta  131 (386)
T cd08191         101 LLAHGGDVRDYYGEFKVPGPVLPLIAVPTTA  131 (386)
T ss_pred             HHhCCCCHHHHhCccccCCCCCCEEEEeCCC
Confidence            33                  68999999974

6-hydroxyhexanoate dehydrogenase (HHD). The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. Some bacteria can grow on cyclic ketones, cyclohexylamine, and alcohols as sole carbon source. Cyclohexylamine is an insecticide and antiseptic in various industries and is considered a possible environmental pollutant. The degradation of these chemical compounds are through the cyclohexanol and cyclohexanone biological oxidation pathway. The intermediates of this pathway include cyclohexanol, cyclohexanone, e-caprolactone, 6-hydroxyhexanoate, 6-oxohexanoate and adipate. The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate.

>PRK10586 putative oxidoreductase; Provisional

Probab=95.81  E-value=0.054  Score=49.83  Aligned_cols=86  Identities=9%  Similarity=0.016  Sum_probs=64.0

Q ss_pred             CeEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhh-hhhhccCC
Q 028883           59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSG-VAAANSQI  137 (202)
Q Consensus        59 ~~V~IimGS~SD~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~Lpg-vvA~~T~~  137 (202)
                      .++.||+|..+=........+.|++-|+.+  .+.+-+-+.+.+.++.+..+ .++++||++-|++..=.+ .+|....+
T Consensus        35 ~~~lvv~g~~~~~~~~~~~~~~l~~~~~~~--~~~~g~~~~~~v~~l~~~~~-~~~d~iiavGGGs~iD~aK~~a~~~~~  111 (362)
T PRK10586         35 SRAVWIYGERAIAAAQPYLPPAFELPGAKH--ILFRGHCSESDVAQLAAASG-DDRQVVIGVGGGALLDTAKALARRLGL  111 (362)
T ss_pred             CeEEEEEChHHHHHHHHHHHHHHHHcCCeE--EEeCCCCCHHHHHHHHHHhc-cCCCEEEEecCcHHHHHHHHHHhhcCC
Confidence            368899998876666677788899888754  34555566777887776654 468999999998664333 66777889


Q ss_pred             cEEEecCCCC
Q 028883          138 LVIRVPLLSE  147 (202)
Q Consensus       138 PVIgVP~~~~  147 (202)
                      |+|.||+..+
T Consensus       112 p~i~vPT~a~  121 (362)
T PRK10586        112 PFVAIPTIAA  121 (362)
T ss_pred             CEEEEeCCcc
Confidence            9999999753

>PRK10624 L-1,2-propanediol oxidoreductase; Provisional

Probab=95.80  E-value=0.052  Score=49.81  Aligned_cols=89  Identities=16%  Similarity=0.194  Sum_probs=64.4

Q ss_pred             CeEEEEecCC-CCHHHHHHHHHHHHHhCCCeEEE-EEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhh-hhh---
Q 028883           59 PIVGIIMESD-LDLPVMNDAARTLSDFGVPYEIK-ILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSG-VAA---  132 (202)
Q Consensus        59 ~~V~IimGS~-SD~~v~~~a~~~L~~~gi~~ev~-V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~Lpg-vvA---  132 (202)
                      .+|.||++.. .+.+..++..+.|++.|+.+.+. =...+.+.+.+.+.++.+.+.++++||++-|++..=.+ .+|   
T Consensus        31 ~~~lvvtd~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS~iD~aK~ia~~~  110 (382)
T PRK10624         31 KKALIVTDKTLVKCGVVAKVTDVLDAAGLAYEIYDGVKPNPTIEVVKEGVEVFKASGADYLIAIGGGSPQDTCKAIGIIS  110 (382)
T ss_pred             CEEEEEeCcchhhCcchHHHHHHHHHCCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCChHHHHHHHHHHHHH
Confidence            3788888764 34458899999999999976542 12356677888888888888899999999998653222 222   


Q ss_pred             h-----------------ccCCcEEEecCCCC
Q 028883          133 A-----------------NSQILVIRVPLLSE  147 (202)
Q Consensus       133 ~-----------------~T~~PVIgVP~~~~  147 (202)
                      .                 ...+|+|.||+..+
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~p~i~VPTTag  142 (382)
T PRK10624        111 NNPEFADVRSLEGVAPTKKPSVPIIAIPTTAG  142 (382)
T ss_pred             HCCCCCCHHHHhCcCcccCCCCCEEEECCCCc
Confidence            1                 12479999999753

>PRK09860 putative alcohol dehydrogenase; Provisional

Probab=95.79  E-value=0.041  Score=50.74  Aligned_cols=88  Identities=16%  Similarity=0.115  Sum_probs=64.9

Q ss_pred             CeEEEEecCC-CCHHHHHHHHHHHHHhCCCeEE-EEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhh-hhhh--
Q 028883           59 PIVGIIMESD-LDLPVMNDAARTLSDFGVPYEI-KILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSG-VAAA--  133 (202)
Q Consensus        59 ~~V~IimGS~-SD~~v~~~a~~~L~~~gi~~ev-~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~Lpg-vvA~--  133 (202)
                      .+|.|++|.. ......++..+.|++.|+.+.+ .=+..+=+-+.+++.++.+++.++++||++-|++.-=.+ +++.  
T Consensus        32 ~~~livt~~~~~~~g~~~~v~~~L~~~~i~~~~f~~v~~np~~~~v~~~~~~~~~~~~D~IiaiGGGS~iD~AK~ia~~~  111 (383)
T PRK09860         32 TRTLIVTDNMLTKLGMAGDVQKALEERNIFSVIYDGTQPNPTTENVAAGLKLLKENNCDSVISLGGGSPHDCAKGIALVA  111 (383)
T ss_pred             CEEEEEcCcchhhCccHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHH
Confidence            4788898864 3466888999999999997532 223347777889999999988899999999998753222 2221  


Q ss_pred             ----------------ccCCcEEEecCCC
Q 028883          134 ----------------NSQILVIRVPLLS  146 (202)
Q Consensus       134 ----------------~T~~PVIgVP~~~  146 (202)
                                      ...+|+|.||+..
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~p~iaIPTTa  140 (383)
T PRK09860        112 ANGGDIRDYEGVDRSAKPQLPMIAINTTA  140 (383)
T ss_pred             HCCCCHHHHhCcCccCCCCCCEEEEeCCC
Confidence                            2468999999865

>cd08180 PDD 1,3-propanediol dehydrogenase (PPD) catalyzes the reduction of 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol in glycerol metabolism

Probab=95.73  E-value=0.054  Score=48.66  Aligned_cols=87  Identities=16%  Similarity=0.082  Sum_probs=61.2

Q ss_pred             CeEEEEecCCCC-HHHHHHHHHHHHHhCCCeEE-EEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCc-hhhhhhhc-
Q 028883           59 PIVGIIMESDLD-LPVMNDAARTLSDFGVPYEI-KILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAH-LSGVAAAN-  134 (202)
Q Consensus        59 ~~V~IimGS~SD-~~v~~~a~~~L~~~gi~~ev-~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~-LpgvvA~~-  134 (202)
                      .++.||++.... ....++..+.|++- +.+.+ .-...+.+.+.+.+.++.+.+.++++||++.|++.. .+..++.. 
T Consensus        23 ~~~lvv~~~~~~~~g~~~~v~~~l~~~-~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~d~IiaiGGGs~~D~aKa~a~~~  101 (332)
T cd08180          23 KRVLIVTDPFMVKSGMLDKVTDHLDSS-IEVEIFSDVVPDPPIEVVAKGIKKFLDFKPDIVIALGGGSAIDAAKAIIYFA  101 (332)
T ss_pred             CeEEEEeCchhhhCccHHHHHHHHHhc-CcEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEECCchHHHHHHHHHHHH
Confidence            478888876433 23667777788765 55432 223467788888899988888889999999998765 44344332 


Q ss_pred             ------cCCcEEEecCCC
Q 028883          135 ------SQILVIRVPLLS  146 (202)
Q Consensus       135 ------T~~PVIgVP~~~  146 (202)
                            ..+|+|.||+..
T Consensus       102 ~~~~~~~~~p~i~VPTta  119 (332)
T cd08180         102 KKLGKKKKPLFIAIPTTS  119 (332)
T ss_pred             hCCCCCCCCCEEEeCCCC
Confidence                  247999999964

1,3-propanediol dehydrogenase (PPD) plays a role in glycerol metabolism of some bacteria in anaerobic conditions. In this degradation pathway, glycerol is converted in a two-step process to 1,3-propanediol (1,3-PD) which is then excreted into the extracellular medium. The first reaction involves the transformation of glycerol into 3-hydroxypropionaldehyde (3-HPA) by a coenzyme B-12-dependent dehydratase. The second reaction involves the dismutation of the 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol by the NADH-linked 1,3-propanediol dehydrogenase (PPD). The enzyme require iron ion for its function. Because many genes in this pathway are present in the pdu (propanediol utilisation) operon, they are also named pdu genes. PPD is a member of the iron-containing alcohol dehydrogenase superfamily. The PPD structure has a dehydroquinat

>cd08190 HOT Hydroxyacid-oxoacid transhydrogenase (HOT) involved in gamma-hydroxybutyrate metabolism

Probab=95.56  E-value=0.075  Score=49.48  Aligned_cols=68  Identities=15%  Similarity=0.170  Sum_probs=53.8

Q ss_pred             CeEEEEecCCC-CHHHHHHHHHHHHHhCCCeEEE-EEccCCCchHHHHHHHHHhhcCceEEEEecCCcCc
Q 028883           59 PIVGIIMESDL-DLPVMNDAARTLSDFGVPYEIK-ILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAH  126 (202)
Q Consensus        59 ~~V~IimGS~S-D~~v~~~a~~~L~~~gi~~ev~-V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~  126 (202)
                      .+|.||++... .....++..+.|++.|+.+.+. -+..+-+.+.+.+.++.+.+.++++||++-|++..
T Consensus        24 ~~vlivt~~~~~~~g~~~~v~~~L~~~gi~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGSvi   93 (414)
T cd08190          24 RRVCLVTDPNLAQLPPVKVVLDSLEAAGINFEVYDDVRVEPTDESFKDAIAFAKKGQFDAFVAVGGGSVI   93 (414)
T ss_pred             CeEEEEECcchhhcchHHHHHHHHHHcCCcEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCccHH
Confidence            47888887653 3346788999999999987642 34468888899999999988899999999999754

Hydroxyacid-oxoacid transhydrogenase (HOT), also known as D-2-hydroxyglutarate transhydrogenase. It catalyzes the conversion of gamma-hydroxybutyrate (GHB) to succinic semialdehyde (SSA), coupled to the stoichiometric conversion of alpha-ketoglutarate to D-2-hydroxyglutarate in gamma-Hydroxybutyrate catabolism. Unlike many other alcohols, which are oxidized by NAD-linked dehydrogenases, gamma-hydroxybutyrate is metabolized to succinate semialdehyde by hydroxyacid-oxoacid transhydrogenase which does not require free NAD or NADP, but instead using alpha -ketoglutarate as an acceptor, converting it to d-2-hydroxyglutarate. Alpha-ketoglutarate serves as an intermediate acceptor to regenerate NAD(P) required for the oxidation of GHB. HOT also catalyzes the reversible oxidation of a hydroxyacid obligatorily coupled to the reduction of an oxoacid, and requires no cofactor. In mammals, the HOT

>PRK06203 aroB 3-dehydroquinate synthase; Reviewed

Probab=95.31  E-value=0.13  Score=47.87  Aligned_cols=87  Identities=15%  Similarity=0.190  Sum_probs=61.5

Q ss_pred             CeEEEEecCCCC---HHHHHHHHHHHHHhCCCeEEE--E---E---ccCCCchHHHHHHHHHhhcCce---EEEEecCC-
Q 028883           59 PIVGIIMESDLD---LPVMNDAARTLSDFGVPYEIK--I---L---PPHQNCKEALSYALSAKERGIK---IIIVGDGV-  123 (202)
Q Consensus        59 ~~V~IimGS~SD---~~v~~~a~~~L~~~gi~~ev~--V---~---SaHRtp~~l~~~~~~~~~~g~~---ViIa~AG~-  123 (202)
                      .++.||+.+.-.   .+..++..+.|++-|+++++.  +   -   ..+-+++.+.++.+.+.+.+++   +||++.|+ 
T Consensus        43 ~r~liVtD~~v~~~~~~l~~~v~~~L~~~g~~~~~~~~~~~~~~ge~~k~~~~~v~~i~~~~~~~~~dr~d~IIaiGGGs  122 (389)
T PRK06203         43 KKVLVVIDSGVLRAHPDLLEQITAYFAAHADVLELVAEPLVVPGGEAAKNDPALVEALHAAINRHGIDRHSYVLAIGGGA  122 (389)
T ss_pred             CeEEEEECchHHHhhhhHHHHHHHHHHhcCCceeeeeeEEEccCCccCCCcHHHHHHHHHHHHHcCCCCCceEEEeCCcH
Confidence            578999865443   245678888888888876432  2   1   2333346677777777776665   99999888 


Q ss_pred             cCchhhhhhhc--cCCcEEEecCC
Q 028883          124 EAHLSGVAAAN--SQILVIRVPLL  145 (202)
Q Consensus       124 aa~LpgvvA~~--T~~PVIgVP~~  145 (202)
                      ..-+++.+|+.  -..|.|.||+.
T Consensus       123 v~D~ak~iA~~~~rgip~I~IPTT  146 (389)
T PRK06203        123 VLDMVGYAAATAHRGVRLIRIPTT  146 (389)
T ss_pred             HHHHHHHHHHHhcCCCCEEEEcCC
Confidence            56788888863  35899999996

>KOG2835 consensus Phosphoribosylamidoimidazole-succinocarboxamide synthase [Nucleotide transport and metabolism]

Probab=95.19  E-value=0.02  Score=53.71  Aligned_cols=103  Identities=16%  Similarity=0.032  Sum_probs=77.9

Q ss_pred             CCCCCceeeeeecCceeEecCChhhhhhccccCcCCCCCCccccccCCCCCCCCCCeEEEEecCCCCHHHHHHHHHHHHH
Q 028883            4 NSKRPNSVRTVSRGTIPVLASSNGSATSRRKDDSSVREPSTVFEEENPNGDSTDAPIVGIIMESDLDLPVMNDAARTLSD   83 (202)
Q Consensus         4 ~~~~~~~~~~~~~ghi~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~IimGS~SD~~v~~~a~~~L~~   83 (202)
                      +.+|.|.++++|+|.-.++-...--..+|..|.+         +.+.            ...-|..              
T Consensus       219 ~d~~im~D~~~~~d~~~vt~e~~ilv~~~~t~~m---------sr~a------------~~a~~~~--------------  263 (373)
T KOG2835|consen  219 GDGRIMKDKKVYFDLDEVTNEGLILVDENTTPVM---------SRYA------------TSAKSRG--------------  263 (373)
T ss_pred             CCcceeeeeeEEeccccCCccceEEEeecCchhH---------hhhh------------hhcccCc--------------
Confidence            4578889999998887777655555666666665         3321            1111111              


Q ss_pred             hCCCeEEEEEccCCCchHHHHHHHHHhhcCc-eEEEEecCCcCchhhhhhhccCCcEEEecCCC
Q 028883           84 FGVPYEIKILPPHQNCKEALSYALSAKERGI-KIIIVGDGVEAHLSGVAAANSQILVIRVPLLS  146 (202)
Q Consensus        84 ~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~-~ViIa~AG~aa~LpgvvA~~T~~PVIgVP~~~  146 (202)
                          +.+.|+|+|..++.-..+.++++..|. .++++++|+++.|+-|.++++ .||=-++++.
T Consensus       264 ----~~~~iaga~~~~~~p~~v~a~f~~~gvp~~~~~~dg~~~~l~~V~~~~~-~~~~~v~v~~  322 (373)
T KOG2835|consen  264 ----VVLWIAGAYKAGHEPLMVDAEFERPGVPVVFVAVDGRDNLLSIVQMPNG-VPVATVAVNN  322 (373)
T ss_pred             ----eEEEEeccCCCCCChhhHHhhccccCcceeeeecccccccccceeccCC-ccccccccCC
Confidence                799999999999999999999999898 599999999999999999999 5555555543

>PF13685 Fe-ADH_2: Iron-containing alcohol dehydrogenase; PDB: 3CE9_C

Probab=95.18  E-value=0.042  Score=48.64  Aligned_cols=136  Identities=15%  Similarity=0.136  Sum_probs=84.5

Q ss_pred             CeEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEE-EccCCCchHHHHHHHHHhhcCceEEEEecCC-cCchhhhhhhccC
Q 028883           59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKI-LPPHQNCKEALSYALSAKERGIKIIIVGDGV-EAHLSGVAAANSQ  136 (202)
Q Consensus        59 ~~V~IimGS~SD~~v~~~a~~~L~~~gi~~ev~V-~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~-aa~LpgvvA~~T~  136 (202)
                      .++.||++...--...++..+.|+..|+++.+-. ...+=+-+.+.++.+.+...+.++||++-|+ ..-+.=++|....
T Consensus        20 ~~~lvv~d~~t~~~~g~~v~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~vGgG~i~D~~K~~A~~~~   99 (250)
T PF13685_consen   20 KKVLVVTDENTYKAAGEKVEESLKSAGIEVAVIEEFVGDADEDEVEKLVEALRPKDADLIIGVGGGTIIDIAKYAAFELG   99 (250)
T ss_dssp             SEEEEEEETTHHHHHHHHHHHHHHTTT-EEEEEE-EE---BHHHHHHHHTTS--TT--EEEEEESHHHHHHHHHHHHHHT
T ss_pred             CcEEEEEcCCHHHHHHHHHHHHHHHcCCeEEEEecCCCCCCHHHHHHHHHHhcccCCCEEEEeCCcHHHHHHHHHHHhcC
Confidence            4899999999877778899999999999876322 1222355567777777766678888887776 6779999999999


Q ss_pred             CcEEEecCCCCCCChhh-HHHhhcC---------CCCCeeeEEecC-----------ChhhHHHHHHHHHccCCHHHHHH
Q 028883          137 ILVIRVPLLSEDWSEDD-VINSIRM---------PSHVQVASVPRN-----------NAKNAALYAVKVLGIADEDLLER  195 (202)
Q Consensus       137 ~PVIgVP~~~~~l~G~D-LlS~vqM---------P~GvpVatV~I~-----------n~~NAAl~Aa~IL~~~d~~l~~k  195 (202)
                      +|.|.||+..+ .+|+. =.+.+..         |.-.|.+++ +|           ..-+.+=+..++-++.||.|..+
T Consensus       100 ~p~isVPTa~S-~DG~aS~~Asl~~~~g~k~s~~~a~~P~aIi-aD~dIi~~AP~~l~~aG~GDli~k~tA~~DW~La~~  177 (250)
T PF13685_consen  100 IPFISVPTAAS-HDGFASPVASLTVDDGFKVSYGPAKAPIAII-ADTDIIANAPRRLIAAGFGDLISKYTALADWKLAHE  177 (250)
T ss_dssp             --EEEEES--S-SGGGTSSEEEEEET-TEEEEE-E----SEEE-EEHHHHHTS-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCEEEeccccc-cccccCCCeeEEecCCCceeecCCCCCeEEE-EeHHHHHhCCHHHHHhhHHHHHHhhhhHHHHHHHHH
Confidence            99999999864 56653 2222211         344455555 23           23455556778888888877665


Q ss_pred             H
Q 028883          196 I  196 (202)
Q Consensus       196 l  196 (202)
                      +
T Consensus       178 ~  178 (250)
T PF13685_consen  178 Y  178 (250)
T ss_dssp             T
T ss_pred             h
Confidence            4

>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional

Probab=95.06  E-value=0.24  Score=47.92  Aligned_cols=85  Identities=18%  Similarity=0.126  Sum_probs=61.8

Q ss_pred             eEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEcc---CCCchHHHHHHHHHhhc---CceEEEEecCC-cCchhhhhh
Q 028883           60 IVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPP---HQNCKEALSYALSAKER---GIKIIIVGDGV-EAHLSGVAA  132 (202)
Q Consensus        60 ~V~IimGS~SD~~v~~~a~~~L~~~gi~~ev~V~Sa---HRtp~~l~~~~~~~~~~---g~~ViIa~AG~-aa~LpgvvA  132 (202)
                      ++.||+..... ...++..+.|+..|+.+...+...   +++.+.+.+..+.+.+.   ..++||++.|+ ..-+++++|
T Consensus       211 k~~iV~d~~v~-~~~~~l~~~L~~~g~~v~~~v~p~~E~~ksl~~v~~~~~~l~~~~~~r~D~IIAIGGGsv~D~AKfvA  289 (542)
T PRK14021        211 KVALIHTQPVQ-RHSDRARTLLRQGGYEVSDIVIPDAEAGKTIEVANGIWQRLGNEGFTRSDAIVGLGGGAATDLAGFVA  289 (542)
T ss_pred             eEEEEECccHH-HHHHHHHHHHHhCCCceEEEEeCCCcccCCHHHHHHHHHHHHhcCCCCCcEEEEEcChHHHHHHHHHH
Confidence            56777755543 467888889999888755445443   34566666666555554   47899988886 677999999


Q ss_pred             h--ccCCcEEEecCC
Q 028883          133 A--NSQILVIRVPLL  145 (202)
Q Consensus       133 ~--~T~~PVIgVP~~  145 (202)
                      +  +-..|+|.||+.
T Consensus       290 ~~y~rGi~~i~vPTT  304 (542)
T PRK14021        290 ATWMRGIRYVNCPTS  304 (542)
T ss_pred             HHHHcCCCEEEeCCh
Confidence            7  689999999994

>cd08198 DHQS-like2 Dehydroquinate synthase (DHQS)-like

Probab=94.98  E-value=0.2  Score=46.64  Aligned_cols=87  Identities=20%  Similarity=0.266  Sum_probs=62.8

Q ss_pred             CeEEEEecCCCCH---HHHHHHHHHHHHhCCCeEE--EE--Ec---cCCC-chHHHHHHHHHhhcCce---EEEEecCC-
Q 028883           59 PIVGIIMESDLDL---PVMNDAARTLSDFGVPYEI--KI--LP---PHQN-CKEALSYALSAKERGIK---IIIVGDGV-  123 (202)
Q Consensus        59 ~~V~IimGS~SD~---~v~~~a~~~L~~~gi~~ev--~V--~S---aHRt-p~~l~~~~~~~~~~g~~---ViIa~AG~-  123 (202)
                      .++.||+...-.-   +..++....|+.-|+++++  .+  ..   .+++ ++.+.++.+.+.+.+++   +||++.|+ 
T Consensus        31 ~r~lvVtD~~v~~~~~~~~~~l~~~L~~~g~~~~v~~~~~~~~~ge~~k~~~~~v~~i~~~l~~~~~~r~~~IIalGGG~  110 (369)
T cd08198          31 PKVLVVIDSGVAQANPQLASDIQAYAAAHADALRLVAPPHIVPGGEACKNDPDLVEALHAAINRHGIDRHSYVIAIGGGA  110 (369)
T ss_pred             CeEEEEECcchHHhhhhHHHHHHHHHHhcCCceeeeeeeEecCCCccCCChHHHHHHHHHHHHHcCCCcCcEEEEECChH
Confidence            5788998876554   4457777788877876552  22  11   3455 36677788877777776   99999888 


Q ss_pred             cCchhhhhhh--ccCCcEEEecCC
Q 028883          124 EAHLSGVAAA--NSQILVIRVPLL  145 (202)
Q Consensus       124 aa~LpgvvA~--~T~~PVIgVP~~  145 (202)
                      ..-++|++|+  +--.|.|.||+.
T Consensus       111 v~D~ag~vA~~~~rGip~I~IPTT  134 (369)
T cd08198         111 VLDAVGYAAATAHRGVRLIRIPTT  134 (369)
T ss_pred             HHHHHHHHHHHhcCCCCEEEECCC
Confidence            5679999997  446899999997

DHQS catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase-like proteins. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. The activity of DHQS requires NAD as cofactor. Proteins of this family share sequence similarity and functional motifs with that of dehydroquinate synthase, but the specific function has not been characterized.

>PRK15138 aldehyde reductase; Provisional

Probab=94.88  E-value=0.11  Score=47.98  Aligned_cols=66  Identities=14%  Similarity=0.103  Sum_probs=48.1

Q ss_pred             CeEEEEecCCCC--HHHHHHHHHHHHHhCCCeEEE-EEccCCCchHHHHHHHHHhhcCceEEEEecCCcCc
Q 028883           59 PIVGIIMESDLD--LPVMNDAARTLSDFGVPYEIK-ILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAH  126 (202)
Q Consensus        59 ~~V~IimGS~SD--~~v~~~a~~~L~~~gi~~ev~-V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~  126 (202)
                      .++.||+|+.|-  ....++..+.|+  |+.+.+. -...|-+.+.+++.++.+++.++++||++-|++.-
T Consensus        30 ~~~livt~~~~~~~~g~~~~v~~~L~--~~~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS~i   98 (387)
T PRK15138         30 ARVLITYGGGSVKKTGVLDQVLDALK--GMDVLEFGGIEPNPTYETLMKAVKLVREEKITFLLAVGGGSVL   98 (387)
T ss_pred             CeEEEECCCchHHhcCcHHHHHHHhc--CCeEEEECCccCCCCHHHHHHHHHHHHHcCCCEEEEeCChHHH
Confidence            479999986552  345677777775  6544332 23467777899999999988899999999998653

>cd08196 DHQS-like1 Dehydroquinate synthase (DHQS)-like

Probab=94.84  E-value=0.28  Score=45.09  Aligned_cols=83  Identities=11%  Similarity=0.068  Sum_probs=63.7

Q ss_pred             CeEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEc---cCCCchHHHHHHHHHhhcCc---eEEEEecCC-cCchhhhh
Q 028883           59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILP---PHQNCKEALSYALSAKERGI---KIIIVGDGV-EAHLSGVA  131 (202)
Q Consensus        59 ~~V~IimGS~SD~~v~~~a~~~L~~~gi~~ev~V~S---aHRtp~~l~~~~~~~~~~g~---~ViIa~AG~-aa~Lpgvv  131 (202)
                      .++.||+...-.-.+.+...+.|+  ++  ++.+.+   .+++.+.+.+..+.+.+.++   ++||++.|+ ..-+++++
T Consensus        20 ~r~lIVtD~~v~~l~~~~l~~~L~--~~--~~~~~~~~e~~k~l~~v~~~~~~~~~~~~~r~d~iIaiGGGsv~D~ak~v   95 (346)
T cd08196          20 ENDVFIVDANVAELYRDRLDLPLD--AA--PVIAIDATEENKSLEAVSSVIESLRQNGARRNTHLVAIGGGIIQDVTTFV   95 (346)
T ss_pred             CeEEEEECccHHHHHHHHHHHHhc--CC--eEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCcEEEEECChHHHHHHHHH
Confidence            468888877654446666666665  44  344444   59999999999999988888   799999888 56799999


Q ss_pred             hh--ccCCcEEEecCC
Q 028883          132 AA--NSQILVIRVPLL  145 (202)
Q Consensus       132 A~--~T~~PVIgVP~~  145 (202)
                      |+  +-..|.|.+|+.
T Consensus        96 A~~~~rgi~~i~iPTT  111 (346)
T cd08196          96 ASIYMRGVSWSFVPTT  111 (346)
T ss_pred             HHHHHcCCCeEEeccc
Confidence            95  557899999984

DHQS catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase-like proteins. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. The activity of DHQS requires NAD as cofactor. Proteins of this family share sequence similarity and functional motifs with that of dehydroquinate synthase, but the specific function has not been characterized.

>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional

Probab=94.80  E-value=0.66  Score=45.34  Aligned_cols=129  Identities=15%  Similarity=0.152  Sum_probs=89.2

Q ss_pred             CCeEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHH-HHHhhcCceEEEEecCCcCchhhhhhhccC
Q 028883           58 APIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYA-LSAKERGIKIIIVGDGVEAHLSGVAAANSQ  136 (202)
Q Consensus        58 ~~~V~IimGS~SD~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~-~~~~~~g~~ViIa~AG~aa~LpgvvA~~T~  136 (202)
                      .|.|..+  |.|.  ..+-+..++.+|+-..++++.  ....+...+++ +.++..+++|||+-.|.++    ++-..++
T Consensus        14 ~p~~~~~--~~~~--l~~~~~~i~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~dviIsrG~ta~----~i~~~~~   83 (538)
T PRK15424         14 KPVIWTV--SVSR--LFELFRDISLEFDHLANITPI--QLGFEKAVTYIRKRLATERCDAIIAAGSNGA----YLKSRLS   83 (538)
T ss_pred             CCeEEEe--eHHH--HHHHHHHHHHhcCCCceEEeh--hhhHHHHHHHHHHHHhhCCCcEEEECchHHH----HHHhhCC
Confidence            4555544  4444  567788888899876666544  46677777777 5566778999999655554    5566789


Q ss_pred             CcEEEecCCCCCCChhhHHHhhcCCCCC--eeeEEecCChhhHHHHHHHHHccC--------CHHHHHHHHHHHh
Q 028883          137 ILVIRVPLLSEDWSEDDVINSIRMPSHV--QVASVPRNNAKNAALYAVKVLGIA--------DEDLLERIRKYVE  201 (202)
Q Consensus       137 ~PVIgVP~~~~~l~G~DLlS~vqMP~Gv--pVatV~I~n~~NAAl~Aa~IL~~~--------d~~l~~kl~~~~~  201 (202)
                      +|||-++++     |.|++..+.-....  .+++|+-.+-...+-.-.++|++.        .++++..+++.++
T Consensus        84 iPVv~i~~s-----~~Dil~al~~a~~~~~~iavv~~~~~~~~~~~~~~~l~~~i~~~~~~~~~e~~~~v~~lk~  153 (538)
T PRK15424         84 VPVILIKPS-----GFDVMQALARARKLTSSIGVVTYQETIPALVAFQKTFNLRIEQRSYVTEEDARGQINELKA  153 (538)
T ss_pred             CCEEEecCC-----HhHHHHHHHHHHhcCCcEEEEecCcccHHHHHHHHHhCCceEEEEecCHHHHHHHHHHHHH
Confidence            999998865     56744444332332  378898888888888888888863        3467777776654

>COG0371 GldA Glycerol dehydrogenase and related enzymes [Energy production and conversion]

Probab=94.51  E-value=0.14  Score=47.88  Aligned_cols=99  Identities=17%  Similarity=0.135  Sum_probs=78.6

Q ss_pred             CeEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcC-chhhhhhhccCC
Q 028883           59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEA-HLSGVAAANSQI  137 (202)
Q Consensus        59 ~~V~IimGS~SD~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa-~LpgvvA~~T~~  137 (202)
                      .++.|++|-..---..++..+.|+..|+ ...-+..-+=+-++++++.+.+...+.+++|++.|+.. -.+=++|-...+
T Consensus        31 ~~~lvv~g~~~~~~~~~~~~~~l~~~g~-~~~~~~~~~a~~~ev~~~~~~~~~~~~d~vIGVGGGk~iD~aK~~A~~~~~  109 (360)
T COG0371          31 SRALVVTGENTYAIAGEKVEKSLKDEGL-VVHVVFVGEASEEEVERLAAEAGEDGADVVIGVGGGKTIDTAKAAAYRLGL  109 (360)
T ss_pred             CceEEEEChhHHHHHHHHHHHHhcccCc-ceeeeecCccCHHHHHHHHHHhcccCCCEEEEecCcHHHHHHHHHHHHcCC
Confidence            5799999999988888899999999998 45556667778899999988877667899999988854 477788889999


Q ss_pred             cEEEecCCCCCCChhh--HHHhhc
Q 028883          138 LVIRVPLLSEDWSEDD--VINSIR  159 (202)
Q Consensus       138 PVIgVP~~~~~l~G~D--LlS~vq  159 (202)
                      |+|.||+..+ -+|..  .+|...
T Consensus       110 pfIsvPT~AS-~Da~~Sp~aSv~~  132 (360)
T COG0371         110 PFISVPTIAS-TDAITSPVASVIY  132 (360)
T ss_pred             CEEEecCccc-cccccCCceeeEE
Confidence            9999999875 34433  344444

>PRK13805 bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional

Probab=93.83  E-value=0.37  Score=48.98  Aligned_cols=86  Identities=15%  Similarity=0.178  Sum_probs=62.9

Q ss_pred             CeEEEEecCCC-CHHHHHHHHHHHH--HhCCCeEEEEEc---cCCCchHHHHHHHHHhhcCceEEEEecCCcCc-hhhhh
Q 028883           59 PIVGIIMESDL-DLPVMNDAARTLS--DFGVPYEIKILP---PHQNCKEALSYALSAKERGIKIIIVGDGVEAH-LSGVA  131 (202)
Q Consensus        59 ~~V~IimGS~S-D~~v~~~a~~~L~--~~gi~~ev~V~S---aHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~-Lpgvv  131 (202)
                      .+|.||++... +....++..+.|+  ..|+.+  .+.+   .+-+.+.+.+.++.+.+.++++||++.|++.. .+.++
T Consensus       481 ~~~lvVtd~~~~~~g~~~~v~~~L~~~~~~i~~--~~~~~v~~np~~~~v~~~~~~~~~~~~D~IIaiGGGSviD~AK~i  558 (862)
T PRK13805        481 KRAFIVTDRFMVELGYVDKVTDVLKKRENGVEY--EVFSEVEPDPTLSTVRKGAELMRSFKPDTIIALGGGSPMDAAKIM  558 (862)
T ss_pred             CEEEEEECcchhhcchHHHHHHHHhcccCCCeE--EEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCchHHHHHHHH
Confidence            57899987544 3347788889998  666654  4443   57777999999999988899999999998543 33344


Q ss_pred             hh-----------------------------ccCCcEEEecCCC
Q 028883          132 AA-----------------------------NSQILVIRVPLLS  146 (202)
Q Consensus       132 A~-----------------------------~T~~PVIgVP~~~  146 (202)
                      |.                             ...+|+|.||+..
T Consensus       559 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~IaVPTTa  602 (862)
T PRK13805        559 WLFYEHPETDFEDLAQKFMDIRKRIYKFPKLGKKAKLVAIPTTS  602 (862)
T ss_pred             HHHHhCCCCCHHHHHHHhcccccccccccccCCCCcEEEeeCCC
Confidence            32                             1357999999974

>cd08184 Fe-ADH3 Iron-containing alcohol dehydrogenases-like

Probab=93.70  E-value=0.48  Score=43.46  Aligned_cols=84  Identities=13%  Similarity=-0.005  Sum_probs=55.7

Q ss_pred             eEEEEecCCCCHHHHHHHHHHHHHhCCCeEEE-EEccCCCchHHHHHHHHHhhc---CceEEEEecCCcCchhh-hhhh-
Q 028883           60 IVGIIMESDLDLPVMNDAARTLSDFGVPYEIK-ILPPHQNCKEALSYALSAKER---GIKIIIVGDGVEAHLSG-VAAA-  133 (202)
Q Consensus        60 ~V~IimGS~SD~~v~~~a~~~L~~~gi~~ev~-V~SaHRtp~~l~~~~~~~~~~---g~~ViIa~AG~aa~Lpg-vvA~-  133 (202)
                      ++.|+++..- ..  ++..+.|++.|+.+.+. -+...=+.+.+++.++.+++.   ++++||++-|++.-=.+ .+|. 
T Consensus        27 ~~lvvtd~~~-~~--~~v~~~L~~~g~~~~~f~~v~~nPt~~~v~~~~~~~~~~~~~~~D~IIaiGGGS~iD~AKaia~~  103 (347)
T cd08184          27 PAVFFVDDVF-QG--KDLISRLPVESEDMIIWVDATEEPKTDQIDALTAQVKSFDGKLPCAIVGIGGGSTLDVAKAVSNM  103 (347)
T ss_pred             eEEEEECcch-hh--hHHHHHHHhcCCcEEEEcCCCCCcCHHHHHHHHHHHHhhCCCCCCEEEEeCCcHHHHHHHHHHHH
Confidence            4666675333 32  56777788888876653 234566667788888888766   89999999998643222 2221 


Q ss_pred             -----------------ccCCcEEEecCCC
Q 028883          134 -----------------NSQILVIRVPLLS  146 (202)
Q Consensus       134 -----------------~T~~PVIgVP~~~  146 (202)
                                       ...+|+|.||+..
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~PlIaVPTTa  133 (347)
T cd08184         104 LTNPGSAEDYQGWDLVKNPAVYKIGIPTLS  133 (347)
T ss_pred             HhCCCCHHHhcccccccCCCCcEEEEeCCC
Confidence                             1247899999964

Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the iron-containing alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron or zinc ions. Members of this family are mainly found in bacteria.

>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion]

Probab=93.56  E-value=0.49  Score=44.50  Aligned_cols=88  Identities=20%  Similarity=0.263  Sum_probs=69.1

Q ss_pred             CeEEEEecCC-CCHHHHHHHHHHHHHhCCCeEE-EEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCc----hhhhhh
Q 028883           59 PIVGIIMESD-LDLPVMNDAARTLSDFGVPYEI-KILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAH----LSGVAA  132 (202)
Q Consensus        59 ~~V~IimGS~-SD~~v~~~a~~~L~~~gi~~ev-~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~----LpgvvA  132 (202)
                      .++.||++.. .....+++..+.|+.-||+|.+ .=...+-+-+.+.+-++.+++.+++.||++-|+|..    +-.+++
T Consensus        30 ~r~liVTd~~~~~~g~~~~v~~~L~~~~i~~~if~~v~p~P~~~~v~~~~~~~~~~~~D~iIalGGGS~~D~AK~i~~~~  109 (377)
T COG1454          30 KRALIVTDRGLAKLGLLDKVLDSLDAAGIEYEVFDEVEPEPTIETVEAGAEVAREFGPDTIIALGGGSVIDAAKAIALLA  109 (377)
T ss_pred             CceEEEECCccccchhHHHHHHHHHhcCCeEEEecCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCccHHHHHHHHHHHh
Confidence            4788888875 6678999999999999988775 334577778888888899999999999999999853    333444


Q ss_pred             hcc---------------CCcEEEecCCC
Q 028883          133 ANS---------------QILVIRVPLLS  146 (202)
Q Consensus       133 ~~T---------------~~PVIgVP~~~  146 (202)
                      .+.               ..|+|.+|+..
T Consensus       110 ~~~~~~~~~~~i~~~~~~~~plIaIPTTa  138 (377)
T COG1454         110 ENPGSVLDYEGIGKVKKPKAPLIAIPTTA  138 (377)
T ss_pred             hCCchhhhhcccccccCCCCCEEEecCCC
Confidence            432               17999999975

>COG2515 Acd 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism]

Probab=93.18  E-value=0.4  Score=44.41  Aligned_cols=74  Identities=19%  Similarity=0.236  Sum_probs=54.4

Q ss_pred             HHHHHHHHHHHH-hCCCeEEEEEccCCCc-------hHHHHHHHHHhh-cCceEEEEecCCcCchhhhhhhcc----CCc
Q 028883           72 PVMNDAARTLSD-FGVPYEIKILPPHQNC-------KEALSYALSAKE-RGIKIIIVGDGVEAHLSGVAAANS----QIL  138 (202)
Q Consensus        72 ~v~~~a~~~L~~-~gi~~ev~V~SaHRtp-------~~l~~~~~~~~~-~g~~ViIa~AG~aa~LpgvvA~~T----~~P  138 (202)
                      +..++.++-+++ .+=||-+-.-+  ++|       +-..|+.++.+. -.++-++++.|..+..+|++++..    ..+
T Consensus       132 ~~~~~~~e~~~~~g~kpyvIp~GG--~~~~g~lGyv~~a~Ei~~Q~~~~~~fD~vVva~gs~gT~AGl~~g~~~~~~~~~  209 (323)
T COG2515         132 ASAEELAEEVRKQGGKPYVIPEGG--SSPLGALGYVRLALEIAEQAEQLLKFDSVVVAPGSGGTHAGLLVGLAQLGPDVE  209 (323)
T ss_pred             hhhHHHHHHHHhcCCCCcEeccCC--cCccccccHHHHHHHHHHHHhhccCCCEEEEeCCCcchHHHHHHHhhhccCCCc
Confidence            566667766665 55555543333  444       445666666654 557999999999999999999987    889


Q ss_pred             EEEecCCCC
Q 028883          139 VIRVPLLSE  147 (202)
Q Consensus       139 VIgVP~~~~  147 (202)
                      |||||++..
T Consensus       210 ViG~~v~~~  218 (323)
T COG2515         210 VIGIDVSAD  218 (323)
T ss_pred             eEEEeecCC
Confidence            999999874

>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins

Probab=93.09  E-value=0.46  Score=34.96  Aligned_cols=74  Identities=12%  Similarity=0.000  Sum_probs=49.6

Q ss_pred             CeEEEEecCCCCH---HHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhhcc
Q 028883           59 PIVGIIMESDLDL---PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANS  135 (202)
Q Consensus        59 ~~V~IimGS~SD~---~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~~T  135 (202)
                      ..|.|+|-|++|.   |.+.++.+.|+++|++|+..=+..+  ++ ..+.+.   +                   ..+..
T Consensus         8 ~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~~--~~-~~~~l~---~-------------------~~g~~   62 (90)
T cd03028           8 NPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILED--EE-VRQGLK---E-------------------YSNWP   62 (90)
T ss_pred             CCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCCC--HH-HHHHHH---H-------------------HhCCC
Confidence            4688888877655   5778999999999999887655443  33 222222   1                   23567


Q ss_pred             CCcEEEecCCCCCCChhh-HHHhhc
Q 028883          136 QILVIRVPLLSEDWSEDD-VINSIR  159 (202)
Q Consensus       136 ~~PVIgVP~~~~~l~G~D-LlS~vq  159 (202)
                      +.|+|=  +.+..++|.| |..+-+
T Consensus        63 tvP~vf--i~g~~iGG~~~l~~l~~   85 (90)
T cd03028          63 TFPQLY--VNGELVGGCDIVKEMHE   85 (90)
T ss_pred             CCCEEE--ECCEEEeCHHHHHHHHH
Confidence            788874  3455678888 887654

The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein

>PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems

Probab=93.08  E-value=0.46  Score=41.51  Aligned_cols=83  Identities=18%  Similarity=0.114  Sum_probs=56.6

Q ss_pred             eEEEEecCCCC--HHHHHHHHHHHHHhCCCe---EEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhhc
Q 028883           60 IVGIIMESDLD--LPVMNDAARTLSDFGVPY---EIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAAN  134 (202)
Q Consensus        60 ~V~IimGS~SD--~~v~~~a~~~L~~~gi~~---ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~~  134 (202)
                      +|+|+--...|  .+..+...+.|++.|+.-   ++.+-.+.+.++++.++++++.....++||++...++ .. +....
T Consensus         1 ~v~i~~~~~~~~~~~~~~gf~~~L~~~g~~~~~~~~~~~~a~~d~~~~~~~~~~l~~~~~DlIi~~gt~aa-~~-~~~~~   78 (294)
T PF04392_consen    1 KVGILQFISHPALDDIVRGFKDGLKELGYDEKNVEIEYKNAEGDPEKLRQIARKLKAQKPDLIIAIGTPAA-QA-LAKHL   78 (294)
T ss_dssp             EEEEEESS--HHHHHHHHHHHHHHHHTT--CCCEEEEEEE-TT-HHHHHHHHHHHCCTS-SEEEEESHHHH-HH-HHHH-
T ss_pred             CeEEEEEeccHHHHHHHHHHHHHHHHcCCccccEEEEEecCCCCHHHHHHHHHHHhcCCCCEEEEeCcHHH-HH-HHHhc
Confidence            46666655555  566777888999999875   7888999999999999999998888999998855443 32 33444


Q ss_pred             cC-CcEEEecC
Q 028883          135 SQ-ILVIRVPL  144 (202)
Q Consensus       135 T~-~PVIgVP~  144 (202)
                      .. .||+-+-+
T Consensus        79 ~~~iPVVf~~V   89 (294)
T PF04392_consen   79 KDDIPVVFCGV   89 (294)
T ss_dssp             SS-S-EEEECE
T ss_pred             CCCcEEEEEec
Confidence            55 89998887

ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.; PDB: 3LFT_A 3LKV_A.

>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []

Probab=92.95  E-value=0.38  Score=39.52  Aligned_cols=81  Identities=20%  Similarity=0.222  Sum_probs=50.9

Q ss_pred             CchHHHHHHHHH-hhcCceEEEEecCCcCchhhhhhhccCCcEEEecCCCCCCChhh-HHHhhcCCCCC-eeeEEecCCh
Q 028883           98 NCKEALSYALSA-KERGIKIIIVGDGVEAHLSGVAAANSQILVIRVPLLSEDWSEDD-VINSIRMPSHV-QVASVPRNNA  174 (202)
Q Consensus        98 tp~~l~~~~~~~-~~~g~~ViIa~AG~aa~LpgvvA~~T~~PVIgVP~~~~~l~G~D-LlS~vqMP~Gv-pVatV~I~n~  174 (202)
                      +.++..+.++++ ...|++|||+-.|.+    -.+-.+++.|||-+|++     |.| |.+..+-...- .++.|+-.|-
T Consensus        18 ~~e~~v~~a~~~~~~~g~dViIsRG~ta----~~lr~~~~iPVV~I~~s-----~~Dil~al~~a~~~~~~Iavv~~~~~   88 (176)
T PF06506_consen   18 SLEEAVEEARQLLESEGADVIISRGGTA----ELLRKHVSIPVVEIPIS-----GFDILRALAKAKKYGPKIAVVGYPNI   88 (176)
T ss_dssp             -HHHHHHHHHHHHTTTT-SEEEEEHHHH----HHHHCC-SS-EEEE--------HHHHHHHHHHCCCCTSEEEEEEESS-
T ss_pred             cHHHHHHHHHHhhHhcCCeEEEECCHHH----HHHHHhCCCCEEEECCC-----HhHHHHHHHHHHhcCCcEEEEecccc
Confidence            457788888888 788999999966544    45667789999999975     567 33333332222 3788887877


Q ss_pred             hhHHHHHHHHHcc
Q 028883          175 KNAALYAVKVLGI  187 (202)
Q Consensus       175 ~NAAl~Aa~IL~~  187 (202)
                      ..-.-...++|++
T Consensus        89 ~~~~~~~~~ll~~  101 (176)
T PF06506_consen   89 IPGLESIEELLGV  101 (176)
T ss_dssp             SCCHHHHHHHHT-
T ss_pred             cHHHHHHHHHhCC
Confidence            7666666778876

Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.

>PRK13055 putative lipid kinase; Reviewed

Probab=92.74  E-value=0.75  Score=41.48  Aligned_cols=77  Identities=18%  Similarity=0.179  Sum_probs=53.3

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhhcc---CCcEEE-
Q 028883           66 ESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANS---QILVIR-  141 (202)
Q Consensus        66 GS~SD~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~~T---~~PVIg-  141 (202)
                      |+.......+++...|++.|+.+++....-+  +....++++++...++++|| ++|+.+.|--++.++-   ..|.+| 
T Consensus        14 G~~~~~~~~~~i~~~l~~~g~~~~i~~t~~~--~~~a~~~~~~~~~~~~d~vv-v~GGDGTl~evvngl~~~~~~~~Lgi   90 (334)
T PRK13055         14 GQEIMKKNVADILDILEQAGYETSAFQTTPE--PNSAKNEAKRAAEAGFDLII-AAGGDGTINEVVNGIAPLEKRPKMAI   90 (334)
T ss_pred             CchhHHHHHHHHHHHHHHcCCeEEEEEeecC--CccHHHHHHHHhhcCCCEEE-EECCCCHHHHHHHHHhhcCCCCcEEE
Confidence            5555566778889999999998776655433  34556667766666778666 6699999998888864   235566 


Q ss_pred             ecCC
Q 028883          142 VPLL  145 (202)
Q Consensus       142 VP~~  145 (202)
                      +|.-
T Consensus        91 iP~G   94 (334)
T PRK13055         91 IPAG   94 (334)
T ss_pred             ECCC
Confidence            4543

>PRK10653 D-ribose transporter subunit RbsB; Provisional

Probab=92.55  E-value=6  Score=33.68  Aligned_cols=87  Identities=14%  Similarity=0.256  Sum_probs=56.9

Q ss_pred             CCCCCeEEEEecCCCC---HHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhh
Q 028883           55 STDAPIVGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVA  131 (202)
Q Consensus        55 ~~~~~~V~IimGS~SD---~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~Lpgvv  131 (202)
                      ..+...|+++..+.+|   ..+.+.+.+.++++|+..  .+...+..+++..++++.+..++.+.+|........+...+
T Consensus        23 ~~~~~~I~vi~~~~~~~f~~~~~~~i~~~~~~~G~~~--~~~~~~~d~~~~~~~~~~l~~~~~dgiii~~~~~~~~~~~l  100 (295)
T PRK10653         23 AMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNL--VVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAV  100 (295)
T ss_pred             cccCCeEEEEecCCCChHHHHHHHHHHHHHHHcCCeE--EEecCCCCHHHHHHHHHHHHHcCCCEEEEcCCChHHHHHHH
Confidence            3345689999977665   334556667778898654  44556778888888888888888887777654433332222


Q ss_pred             hh--ccCCcEEEec
Q 028883          132 AA--NSQILVIRVP  143 (202)
Q Consensus       132 A~--~T~~PVIgVP  143 (202)
                      .-  ....|||.+-
T Consensus       101 ~~~~~~~ipvV~~~  114 (295)
T PRK10653        101 KMANQANIPVITLD  114 (295)
T ss_pred             HHHHHCCCCEEEEc
Confidence            22  2457888763

>cd06283 PBP1_RegR_EndR_KdgR_like Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR

Probab=92.53  E-value=4.9  Score=32.79  Aligned_cols=78  Identities=14%  Similarity=0.148  Sum_probs=50.2

Q ss_pred             EEEEecCCCC---HHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhh--hcc
Q 028883           61 VGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAA--ANS  135 (202)
Q Consensus        61 V~IimGS~SD---~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA--~~T  135 (202)
                      |++|..+.+|   ....+.+.+.++++|+  ++.+......++...++++.+..++++.||.........  .+.  -..
T Consensus         2 igvi~~~~~~~~~~~~~~~i~~~a~~~g~--~~~~~~~~~~~~~~~~~~~~l~~~~~dgiii~~~~~~~~--~l~~~~~~   77 (267)
T cd06283           2 IGVIVADITNPFSSLVLKGIEDVCRAHGY--QVLVCNSDNDPEKEKEYLESLLAYQVDGLIVNPTGNNKE--LYQRLAKN   77 (267)
T ss_pred             EEEEecCCccccHHHHHHHHHHHHHHcCC--EEEEEcCCCCHHHHHHHHHHHHHcCcCEEEEeCCCCChH--HHHHHhcC
Confidence            6777766555   5566778888889985  445555555677777888888888888666655432221  121  224


Q ss_pred             CCcEEEe
Q 028883          136 QILVIRV  142 (202)
Q Consensus       136 ~~PVIgV  142 (202)
                      ..|||.+
T Consensus        78 ~ipvV~~   84 (267)
T cd06283          78 GKPVVLV   84 (267)
T ss_pred             CCCEEEE
Confidence            5688876

Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR, all of which are members of the LacI-GalR family of bacterial transcription regulators. RegR regulates bacterial competence and the expression of virulence factors, including hyaluronidase. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b

>TIGR03405 Phn_Fe-ADH phosphonate metabolism-associated iron-containing alcohol dehydrogenase

Probab=92.38  E-value=0.66  Score=42.27  Aligned_cols=87  Identities=10%  Similarity=0.087  Sum_probs=57.8

Q ss_pred             CeEEEEecCCC-CHHHHHHHHHHHHHhCCCeEE-EEEccCCCchHHHHHHHHHhhcC--ceEEEEecCCcCc-hhhhhhh
Q 028883           59 PIVGIIMESDL-DLPVMNDAARTLSDFGVPYEI-KILPPHQNCKEALSYALSAKERG--IKIIIVGDGVEAH-LSGVAAA  133 (202)
Q Consensus        59 ~~V~IimGS~S-D~~v~~~a~~~L~~~gi~~ev-~V~SaHRtp~~l~~~~~~~~~~g--~~ViIa~AG~aa~-LpgvvA~  133 (202)
                      .+|.||++... +....++..+.|++.  .+.+ .=.-.+-+.+.+.+..+.+.+.+  +++||++.|++.. .+..+|.
T Consensus        24 ~r~lvVtd~~~~~~g~~~~v~~~L~~~--~~~~~~~v~~~pt~~~v~~~~~~~~~~~~~~D~IIaiGGGSviD~aK~ia~  101 (355)
T TIGR03405        24 RRVVVVTFPEARALGLARRLEALLGGR--LAALIDDVAPNPDVAQLDGLYARLWGDEGACDLVIALGGGSVIDTAKVLAV  101 (355)
T ss_pred             CeEEEEECcchhhcchHHHHHHHhccC--cEEEeCCCCCCcCHHHHHHHHHHHHhcCCCCCEEEEeCCccHHHHHHHHHH
Confidence            47899997643 245667777777543  2222 11336777788888888877766  8999999999754 2223333


Q ss_pred             c----------------------cCCcEEEecCCCC
Q 028883          134 N----------------------SQILVIRVPLLSE  147 (202)
Q Consensus       134 ~----------------------T~~PVIgVP~~~~  147 (202)
                      .                      ..+|+|.||+..+
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~P~IaVPTTag  137 (355)
T TIGR03405       102 GLRRGEFDLLLQLLRNGRDFAPTARLPLVAIPTTAG  137 (355)
T ss_pred             HHhCCCcccHHHHHhcCCccCCCCCCCEEEEcCCCc
Confidence            2                      2479999999653

2-hydroxyethylphosphonate (2-HEP), the presumed product of the reaction of Pald with an alcohol dehydrogenase, is a biologically novel but reasonable analog of 2-AEP and may be a constituent of as-yet undescribed natural products. In the case of Azoarcus, downstream of the dehydrogenase is a CDP-glycerol:glycerophosphate transferase homolog that may indicate the existence of a pathway for 2-HEP-derived phosphonolipid biosynthesis.

>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc)

Probab=92.08  E-value=1.3  Score=38.51  Aligned_cols=83  Identities=14%  Similarity=0.150  Sum_probs=48.9

Q ss_pred             EEEEecCCCCHHHHHHHHHHHHHh-CCCeEEEEEccCCCchH---------------------------------HHHHH
Q 028883           61 VGIIMESDLDLPVMNDAARTLSDF-GVPYEIKILPPHQNCKE---------------------------------ALSYA  106 (202)
Q Consensus        61 V~IimGS~SD~~v~~~a~~~L~~~-gi~~ev~V~SaHRtp~~---------------------------------l~~~~  106 (202)
                      |++++|.-+|+-.+....+.|++. ++++.+-+.+-|+.+..                                 ..++.
T Consensus         2 i~~~~gtr~~~~~~~pl~~~l~~~~~~~~~~~~tg~h~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~   81 (363)
T cd03786           2 ILVVTGTRPEYIKLAPLIRALKKDPGFELVLVVTGQHYDMEMGVTFFEILFIIKPDYDLLLGSDSQSLGAQTAGLLIGLE   81 (363)
T ss_pred             EEEEEecCHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCChhhhHHHHHhhCCCCCCEEEecCCCCCCHHHHHHHHHHHHH
Confidence            556666666666666666666554 55555555555554432                                 22333


Q ss_pred             HHHhhcCceEEEEecCCcCchhhhhhh-ccCCcEEEec
Q 028883          107 LSAKERGIKIIIVGDGVEAHLSGVAAA-NSQILVIRVP  143 (202)
Q Consensus       107 ~~~~~~g~~ViIa~AG~aa~LpgvvA~-~T~~PVIgVP  143 (202)
                      +...+...+++++-......+++.+++ ....||+.+.
T Consensus        82 ~~l~~~~pDvV~~~g~~~~~~~~~~aa~~~~iPvv~~~  119 (363)
T cd03786          82 AVLLEEKPDLVLVLGDTNETLAAALAAFKLGIPVAHVE  119 (363)
T ss_pred             HHHHHhCCCEEEEeCCchHHHHHHHHHHHcCCCEEEEe
Confidence            333444578888874455667666555 5788999864

The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st

>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A

Probab=91.91  E-value=2.7  Score=34.55  Aligned_cols=81  Identities=22%  Similarity=0.265  Sum_probs=63.8

Q ss_pred             EEEEecCCCCH---HHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhhcc--
Q 028883           61 VGIIMESDLDL---PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANS--  135 (202)
Q Consensus        61 V~IimGS~SD~---~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~~T--  135 (202)
                      |+||+.+.++-   .+.+.+.+.++++|+.+++. ....-.+++..+.++++.+++++.||...--...+...+.-..  
T Consensus         1 I~vi~~~~~~~~~~~~~~g~~~~a~~~g~~~~~~-~~~~~d~~~q~~~i~~~i~~~~d~Iiv~~~~~~~~~~~l~~~~~~   79 (257)
T PF13407_consen    1 IGVIVPSMDNPFWQQVIKGAKAAAKELGYEVEIV-FDAQNDPEEQIEQIEQAISQGVDGIIVSPVDPDSLAPFLEKAKAA   79 (257)
T ss_dssp             EEEEESSSSSHHHHHHHHHHHHHHHHHTCEEEEE-EESTTTHHHHHHHHHHHHHTTESEEEEESSSTTTTHHHHHHHHHT
T ss_pred             cEEEeCCCCCHHHHHHHHHHHHHHHHcCCEEEEe-CCCCCCHHHHHHHHHHHHHhcCCEEEecCCCHHHHHHHHHHHhhc
Confidence            68888888884   34456777788899865555 6889999999999999999999999988777777777765543  


Q ss_pred             CCcEEEe
Q 028883          136 QILVIRV  142 (202)
Q Consensus       136 ~~PVIgV  142 (202)
                      ..|||.+
T Consensus        80 gIpvv~~   86 (257)
T PF13407_consen   80 GIPVVTV   86 (257)
T ss_dssp             TSEEEEE
T ss_pred             CceEEEE
Confidence            5799985

...

>TIGR03702 lip_kinase_YegS lipid kinase YegS

Probab=91.71  E-value=1.2  Score=39.10  Aligned_cols=81  Identities=23%  Similarity=0.272  Sum_probs=54.6

Q ss_pred             EEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhhccC-----
Q 028883           62 GIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQ-----  136 (202)
Q Consensus        62 ~IimGS~SD~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~~T~-----  136 (202)
                      .|+=|..+.....++..+.|++.|+.|++...   +.+....++++++...+.++|| ++|+.+.+--|+.++..     
T Consensus         4 ~I~N~~~~~~~~~~~~~~~l~~~g~~~~v~~t---~~~~~a~~~a~~~~~~~~d~vv-~~GGDGTi~ev~ngl~~~~~~~   79 (293)
T TIGR03702         4 LILNGKQADNEDVREAVGDLRDEGIQLHVRVT---WEKGDAQRYVAEALALGVSTVI-AGGGDGTLREVATALAQIRDDA   79 (293)
T ss_pred             EEEeCCccchhHHHHHHHHHHHCCCeEEEEEe---cCCCCHHHHHHHHHHcCCCEEE-EEcCChHHHHHHHHHHhhCCCC
Confidence            34444444555677788889999998877733   3355566777777666777655 78999999888888742     


Q ss_pred             -CcEEEecCCC
Q 028883          137 -ILVIRVPLLS  146 (202)
Q Consensus       137 -~PVIgVP~~~  146 (202)
                       .|.--+|.-+
T Consensus        80 ~~~lgiiP~GT   90 (293)
T TIGR03702        80 APALGLLPLGT   90 (293)
T ss_pred             CCcEEEEcCCc
Confidence             2454466554

Members of this protein family are designated YegS, an apparent lipid kinase family in the Proteobacteria. Bakali, et al. report phosphatidylglycerol kinase activity for the member from Escherichia coli, but refrain from calling that activity synonymous with its biological role. Note that a broader, subfamily-type model (TIGR00147), includes this family but also multiple paralogs in some species and varied functions.

>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR

Probab=91.68  E-value=2.7  Score=40.89  Aligned_cols=117  Identities=10%  Similarity=0.130  Sum_probs=76.7

Q ss_pred             HHHHHHHHHHhCCCeEEEEEccCCCchHHHHHH-HHHhhcCceEEEEecCCcCchhhhhhhccCCcEEEecCCCCCCChh
Q 028883           74 MNDAARTLSDFGVPYEIKILPPHQNCKEALSYA-LSAKERGIKIIIVGDGVEAHLSGVAAANSQILVIRVPLLSEDWSED  152 (202)
Q Consensus        74 ~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~-~~~~~~g~~ViIa~AG~aa~LpgvvA~~T~~PVIgVP~~~~~l~G~  152 (202)
                      .+-+.++..++.-..++.|.  -...+...+++ +.+...|++|||+-.|.+    .++-..+++|||-++++     |.
T Consensus        16 ~~~~~~i~~~~~~~~~~~v~--~~~~~~~~~~a~~~~~~~~~dviIsrG~ta----~~i~~~~~iPVv~i~~s-----~~   84 (526)
T TIGR02329        16 FDLFRDIAPEFDHRANITPI--QLGFEDAVREIRQRLGAERCDVVVAGGSNG----AYLKSRLSLPVIVIKPT-----GF   84 (526)
T ss_pred             HHHHHHHHHhCCCCceEEEE--eccHHHHHHHHHHHHHhCCCcEEEECchHH----HHHHHhCCCCEEEecCC-----hh
Confidence            44455666666643344443  23456666666 446677899999965544    35667789999998875     46


Q ss_pred             hHHHhhcCCCCC--eeeEEecCChhhHHHHHHHHHccC--------CHHHHHHHHHHHh
Q 028883          153 DVINSIRMPSHV--QVASVPRNNAKNAALYAVKVLGIA--------DEDLLERIRKYVE  201 (202)
Q Consensus       153 DLlS~vqMP~Gv--pVatV~I~n~~NAAl~Aa~IL~~~--------d~~l~~kl~~~~~  201 (202)
                      |++..++-..+.  .+++|+-.+-.+.+-.-..+|+..        .++++..+++.++
T Consensus        85 Dil~al~~a~~~~~~ia~vg~~~~~~~~~~~~~ll~~~i~~~~~~~~~e~~~~~~~l~~  143 (526)
T TIGR02329        85 DVMQALARARRIASSIGVVTHQDTPPALRRFQAAFNLDIVQRSYVTEEDARSCVNDLRA  143 (526)
T ss_pred             hHHHHHHHHHhcCCcEEEEecCcccHHHHHHHHHhCCceEEEEecCHHHHHHHHHHHHH
Confidence            744444332332  379998889888888888888763        2467777766654

At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.

>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed

Probab=91.65  E-value=0.51  Score=40.97  Aligned_cols=77  Identities=14%  Similarity=0.150  Sum_probs=50.1

Q ss_pred             CeEEEEecCCCCHHHH-----HHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEe----cCCcCchhh
Q 028883           59 PIVGIIMESDLDLPVM-----NDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVG----DGVEAHLSG  129 (202)
Q Consensus        59 ~~V~IimGS~SD~~v~-----~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~----AG~aa~Lpg  129 (202)
                      .+|+|++|+.|+....     ..+.+.|++.|+.+++-  ....   .+.+.+   ...++++++..    -|...++++
T Consensus         5 ~~v~~~~g~~~~~~~~~~~s~~~i~~al~~~g~~v~~i--~~~~---~~~~~~---~~~~~D~v~~~~~g~~~~~~~~~~   76 (304)
T PRK01372          5 GKVAVLMGGTSAEREVSLNSGAAVLAALREAGYDAHPI--DPGE---DIAAQL---KELGFDRVFNALHGRGGEDGTIQG   76 (304)
T ss_pred             cEEEEEeCCCCCCceEeHHhHHHHHHHHHHCCCEEEEE--ecCc---chHHHh---ccCCCCEEEEecCCCCCCccHHHH
Confidence            4799999999976655     89999999999975543  2221   222222   23457766654    345667787


Q ss_pred             hhhhccCCcEEEecC
Q 028883          130 VAAANSQILVIRVPL  144 (202)
Q Consensus       130 vvA~~T~~PVIgVP~  144 (202)
                      ++..+ .+|++|-+.
T Consensus        77 ~le~~-gi~~~g~~~   90 (304)
T PRK01372         77 LLELL-GIPYTGSGV   90 (304)
T ss_pred             HHHHc-CCCccCCCH
Confidence            76544 777777543

>cd01539 PBP1_GGBP Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species

Probab=91.62  E-value=1.8  Score=37.30  Aligned_cols=83  Identities=16%  Similarity=0.095  Sum_probs=58.6

Q ss_pred             eEEEEecCCCC---HHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhhc--
Q 028883           60 IVGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAAN--  134 (202)
Q Consensus        60 ~V~IimGS~SD---~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~~--  134 (202)
                      +|+||..+.+|   ..+.+.+.+.++++|..|++.+...+..+++-.++++++..++++.||..+.....+..++...  
T Consensus         1 ~Igviv~~~~~~~~~~~~~gi~~~a~~~~~g~~~~~~~~~~~~~~q~~~i~~l~~~~vdgiii~~~~~~~~~~~~~~~~~   80 (303)
T cd01539           1 KIGVFLYKFDDTFISLVRKNLEDIQKENGGKVEFTFYDAKNNQSTQNEQIDTALAKGVDLLAVNLVDPTAAQTVINKAKQ   80 (303)
T ss_pred             CeEEEeeCCCChHHHHHHHHHHHHHHhhCCCeeEEEecCCCCHHHHHHHHHHHHHcCCCEEEEecCchhhHHHHHHHHHH
Confidence            46777765544   2334567777778666678888889999999999999888888987777654444455555443  


Q ss_pred             cCCcEEEe
Q 028883          135 SQILVIRV  142 (202)
Q Consensus       135 T~~PVIgV  142 (202)
                      -..|||.+
T Consensus        81 ~giPvV~~   88 (303)
T cd01539          81 KNIPVIFF   88 (303)
T ss_pred             CCCCEEEe
Confidence            36798875

Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. GGBP is a member of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic GGBP is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.

>PRK11914 diacylglycerol kinase; Reviewed

Probab=91.55  E-value=1.4  Score=38.94  Aligned_cols=84  Identities=14%  Similarity=0.100  Sum_probs=58.2

Q ss_pred             CeEEEEe----cCCCCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhhc
Q 028883           59 PIVGIIM----ESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAAN  134 (202)
Q Consensus        59 ~~V~Iim----GS~SD~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~~  134 (202)
                      .++.||.    |+.......+++.+.|++.|+.+++....  + +....++++++..++.++|| ++|+.+.+--++-++
T Consensus         9 ~~~~iI~NP~sG~g~~~~~~~~~~~~l~~~g~~~~~~~t~--~-~~~~~~~a~~~~~~~~d~vv-v~GGDGTi~evv~~l   84 (306)
T PRK11914          9 GKVTVLTNPLSGHGAAPHAAERAIARLHHRGVDVVEIVGT--D-AHDARHLVAAALAKGTDALV-VVGGDGVISNALQVL   84 (306)
T ss_pred             ceEEEEECCCCCCCcHHHHHHHHHHHHHHcCCeEEEEEeC--C-HHHHHHHHHHHHhcCCCEEE-EECCchHHHHHhHHh
Confidence            3455543    55556677888999999999877664332  2 67888888888777788655 789999988888775


Q ss_pred             --cCCcEEEecCCC
Q 028883          135 --SQILVIRVPLLS  146 (202)
Q Consensus       135 --T~~PVIgVP~~~  146 (202)
                        +..|+--+|.-+
T Consensus        85 ~~~~~~lgiiP~GT   98 (306)
T PRK11914         85 AGTDIPLGIIPAGT   98 (306)
T ss_pred             ccCCCcEEEEeCCC
Confidence              345544445433

>cd01391 Periplasmic_Binding_Protein_Type_1 Type 1 periplasmic binding fold superfamily

Probab=91.38  E-value=1.8  Score=33.94  Aligned_cols=85  Identities=15%  Similarity=0.185  Sum_probs=55.8

Q ss_pred             eEEEEecCC-CC---HHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchh-hhhhhc
Q 028883           60 IVGIIMESD-LD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLS-GVAAAN  134 (202)
Q Consensus        60 ~V~IimGS~-SD---~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~Lp-gvvA~~  134 (202)
                      +|+++..+. ++   ....+.+...++++|..+++.+......++...+.++++..++++.+|.......... .-.+..
T Consensus         1 ~Ig~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~~~~~~~~~~~~~~   80 (269)
T cd01391           1 KIGVLLPLSGSAPFGAQLLAGIELAAEEIGRGLEVILADSQSDPERALEALRDLIQQGVDGIIGPPSSSSALAVVELAAA   80 (269)
T ss_pred             CceEEeecCCCcHHHHHHHHHHHHHHHHhCCceEEEEecCCCCHHHHHHHHHHHHHcCCCEEEecCCCHHHHHHHHHHHH
Confidence            366666443 12   3334455566777677788888888999988888888888888888877655433321 122335


Q ss_pred             cCCcEEEecC
Q 028883          135 SQILVIRVPL  144 (202)
Q Consensus       135 T~~PVIgVP~  144 (202)
                      ...|+|.+-.
T Consensus        81 ~~ip~v~~~~   90 (269)
T cd01391          81 AGIPVVSLDA   90 (269)
T ss_pred             cCCcEEEecC
Confidence            6789987643

Type 1 periplasmic binding fold superfamily. This model and hierarchy represent the ligand binding domains of the LacI family of transcriptional regulators, periplasmic binding proteins of the ABC-type transport systems, the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases including the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domains of the ionotropic glutamate receptors (iGluRs). In LacI-like transcriptional regulator and the bacterial periplasmic binding proteins the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. Periplasmic sugar binding proteins are one of the components of ABC transporters and are involved in the active transport of water-soluble ligands. The LacI family of proteins con

>TIGR02417 fruct_sucro_rep D-fructose-responsive transcription factor

Probab=91.33  E-value=8.7  Score=33.02  Aligned_cols=112  Identities=13%  Similarity=0.146  Sum_probs=66.9

Q ss_pred             CCCeEEEEecCCCC---HHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhh
Q 028883           57 DAPIVGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAA  133 (202)
Q Consensus        57 ~~~~V~IimGS~SD---~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~  133 (202)
                      +...|+++....+|   ....+.+.+.+++.|.  .+.+......+++..++++.+..++++-+|........- ..+.-
T Consensus        59 ~~~~Igvi~~~~~~~~~~~~~~~i~~~~~~~gy--~~~i~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~-~~~~~  135 (327)
T TIGR02417        59 RSRTIGLVIPDLENYSYARIAKELEQQCREAGY--QLLIACSDDNPDQEKVVIENLLARQVDALIVASCMPPED-AYYQK  135 (327)
T ss_pred             CCceEEEEeCCCCCccHHHHHHHHHHHHHHCCC--EEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCCh-HHHHH
Confidence            34689999875444   3345566667777775  556666777888888888888888888766654332111 22222


Q ss_pred             --ccCCcEEEecCCCCCCChhhHHHhhcCCCCCeeeEEecCChhhHHHHHHHHHc
Q 028883          134 --NSQILVIRVPLLSEDWSEDDVINSIRMPSHVQVASVPRNNAKNAALYAVKVLG  186 (202)
Q Consensus       134 --~T~~PVIgVP~~~~~l~G~DLlS~vqMP~GvpVatV~I~n~~NAAl~Aa~IL~  186 (202)
                        ....||+-+=...               ++.++..|..||-..+.+++-.++.
T Consensus       136 l~~~~iPvV~~~~~~---------------~~~~~~~V~~dn~~~~~~~~~~L~~  175 (327)
T TIGR02417       136 LQNEGLPVVALDRSL---------------DDEHFCSVISDDVDAAAELIERLLS  175 (327)
T ss_pred             HHhcCCCEEEEcccc---------------CCCCCCEEEeCcHHHHHHHHHHHHH
Confidence              2457887542211               0112345777887776666555553

Members of this family belong the lacI helix-turn-helix family (pfam00356) of DNA-binding transcriptional regulators. All members are from the proteobacteria. Characterized members act as positive and negative transcriptional regulators of fructose and sucrose transport and metabolism. Sucrose is a disaccharide composed of fructose and glucose; D-fructose-1-phosphate rather than an intact sucrose moiety has been shown to act as the inducer.

>TIGR00365 monothiol glutaredoxin, Grx4 family

Probab=91.23  E-value=1.1  Score=33.65  Aligned_cols=74  Identities=14%  Similarity=0.087  Sum_probs=48.9

Q ss_pred             CeEEEEecCCCCH---HHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhhcc
Q 028883           59 PIVGIIMESDLDL---PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANS  135 (202)
Q Consensus        59 ~~V~IimGS~SD~---~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~~T  135 (202)
                      ..|.|.|-|++|+   |++.++.+.|+++|++|+..  -....++...+ +++                      +.+..
T Consensus        12 ~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~--di~~~~~~~~~-l~~----------------------~tg~~   66 (97)
T TIGR00365        12 NPVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYV--NVLEDPEIRQG-IKE----------------------YSNWP   66 (97)
T ss_pred             CCEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEE--ECCCCHHHHHH-HHH----------------------HhCCC
Confidence            4799999887555   77789999999999998743  22233433222 221                      23456


Q ss_pred             CCcEEEecCCCCCCChhh-HHHhhc
Q 028883          136 QILVIRVPLLSEDWSEDD-VINSIR  159 (202)
Q Consensus       136 ~~PVIgVP~~~~~l~G~D-LlS~vq  159 (202)
                      +.|.|=  +.+...+|.| |..+.+
T Consensus        67 tvP~vf--i~g~~iGG~ddl~~l~~   89 (97)
T TIGR00365        67 TIPQLY--VKGEFVGGCDIIMEMYQ   89 (97)
T ss_pred             CCCEEE--ECCEEEeChHHHHHHHH
Confidence            778774  4455578888 877665

The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.

>cd06311 PBP1_ABC_sugar_binding_like_3 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems

Probab=91.11  E-value=7.9  Score=32.13  Aligned_cols=83  Identities=13%  Similarity=0.133  Sum_probs=56.0

Q ss_pred             EEEEecCCCC---HHHHHHHHHHHHHhC---CCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhh--
Q 028883           61 VGIIMESDLD---LPVMNDAARTLSDFG---VPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAA--  132 (202)
Q Consensus        61 V~IimGS~SD---~~v~~~a~~~L~~~g---i~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA--  132 (202)
                      |+++..+.++   ..+.+.+.+.++++|   ..|++.+......++...++.+.+..++++.||....-...+...+.  
T Consensus         2 Ig~i~~~~~~~f~~~~~~gi~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vDgiii~~~~~~~~~~~i~~~   81 (274)
T cd06311           2 IGVSIPAADHGWTAGIVWHAQAAAKKLEAAYPDVEFILVTASNDTEQQNAQQDLLINRKIDALVILPFESAPLTQPVAKA   81 (274)
T ss_pred             eeeeccCCCCcHHHHHHHHHHHHHHHhhhhCCCeEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEeCCCchhhHHHHHHH
Confidence            5666655554   344556666677764   67888888887778888888888888888988877554444444432  


Q ss_pred             hccCCcEEEec
Q 028883          133 ANSQILVIRVP  143 (202)
Q Consensus       133 ~~T~~PVIgVP  143 (202)
                      .....|||.+-
T Consensus        82 ~~~gIpvV~~d   92 (274)
T cd06311          82 KKAGIFVVVVD   92 (274)
T ss_pred             HHCCCeEEEEc
Confidence            24568998763

Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.

>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family

Probab=90.99  E-value=1.2  Score=38.83  Aligned_cols=83  Identities=18%  Similarity=0.274  Sum_probs=54.3

Q ss_pred             eEEEEe----cCCCCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhhcc
Q 028883           60 IVGIIM----ESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANS  135 (202)
Q Consensus        60 ~V~Iim----GS~SD~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~~T  135 (202)
                      ++.||.    |+.......+++.+.|++.|+.+++.... ++  ....++++.+...+.+++| ++|+.+.+-.++-++-
T Consensus         3 ~~~ii~Np~sg~~~~~~~~~~i~~~l~~~~~~~~~~~t~-~~--~~~~~~~~~~~~~~~d~iv-v~GGDGTl~~v~~~l~   78 (293)
T TIGR00147         3 EAPAILNPTAGKSNDNKPLREVIMLLREEGMEIHVRVTW-EK--GDAARYVEEARKFGVDTVI-AGGGDGTINEVVNALI   78 (293)
T ss_pred             eEEEEECCCccchhhHHHHHHHHHHHHHCCCEEEEEEec-Cc--ccHHHHHHHHHhcCCCEEE-EECCCChHHHHHHHHh
Confidence            455543    54455677888999999999987764432 22  1223445444455667655 5899999998887753


Q ss_pred             ---CCcEEE-ecCCC
Q 028883          136 ---QILVIR-VPLLS  146 (202)
Q Consensus       136 ---~~PVIg-VP~~~  146 (202)
                         ..|.|| +|.-+
T Consensus        79 ~~~~~~~lgiiP~Gt   93 (293)
T TIGR00147        79 QLDDIPALGILPLGT   93 (293)
T ss_pred             cCCCCCcEEEEcCcC
Confidence               457888 77654

The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.

>cd06280 PBP1_LacI_like_4 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors

Probab=90.49  E-value=8.8  Score=31.64  Aligned_cols=79  Identities=15%  Similarity=0.180  Sum_probs=49.7

Q ss_pred             EEEEecCCCC---HHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhhccCC
Q 028883           61 VGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQI  137 (202)
Q Consensus        61 V~IimGS~SD---~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~~T~~  137 (202)
                      |+++....+|   ....+.+.+.++++|.  ++-+...+..++...++++....++++.+|...-. ....-.-.-....
T Consensus         2 Ig~i~p~~~~~~~~~~~~~i~~~~~~~g~--~~~~~~~~~~~~~~~~~i~~l~~~~~dgiii~~~~-~~~~~~~~~~~~i   78 (263)
T cd06280           2 VGLIVADIRNPFFTAVSRAVEDAAYRAGL--RVILCNTDEDPEKEAMYLELMEEERVTGVIFAPTR-ATLRRLAELRLSF   78 (263)
T ss_pred             EEEEecccccccHHHHHHHHHHHHHHCCC--EEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEeCCC-CCchHHHHHhcCC
Confidence            5666655443   3345666777888884  56667778888888888888888888866665422 2222111112356


Q ss_pred             cEEEe
Q 028883          138 LVIRV  142 (202)
Q Consensus       138 PVIgV  142 (202)
                      |||.+
T Consensus        79 PvV~~   83 (263)
T cd06280          79 PVVLI   83 (263)
T ss_pred             CEEEE
Confidence            88876

This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.

>COG3199 Predicted inorganic polyphosphate/ATP-NAD kinase [General function prediction only]

Probab=90.15  E-value=2.5  Score=39.77  Aligned_cols=89  Identities=20%  Similarity=0.260  Sum_probs=62.8

Q ss_pred             HHHhCCCeEEEEEccC---CCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhh-ccCCcEEEecCCCCCCChhhHHH
Q 028883           81 LSDFGVPYEIKILPPH---QNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAA-NSQILVIRVPLLSEDWSEDDVIN  156 (202)
Q Consensus        81 L~~~gi~~ev~V~SaH---Rtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~-~T~~PVIgVP~~~~~l~G~DLlS  156 (202)
                      ++.++.+|++.-.-.|   -|-+.+...++++.++|.++ |+.||+.+..--+..+ --..||+|+|.-....       
T Consensus        65 ~~~~~~~~~v~~~~~~~~~tTa~DT~~~~r~~~~~gVdl-IvfaGGDGTarDVa~av~~~vPvLGipaGvk~~-------  136 (355)
T COG3199          65 AEASGFKYRVIRFQESTPRTTAEDTINAVRRMVERGVDL-IVFAGGDGTARDVAEAVGADVPVLGIPAGVKNY-------  136 (355)
T ss_pred             HHhhcCcceEEeecccCCCccHHHHHHHHHHHHhcCceE-EEEeCCCccHHHHHhhccCCCceEeecccccee-------
Confidence            3445556665531111   34466777888888888775 6678999998888888 7899999999866532       


Q ss_pred             hhcCCCCCeeeEEecCChhhHHHHHHHHHcc
Q 028883          157 SIRMPSHVQVASVPRNNAKNAALYAVKVLGI  187 (202)
Q Consensus       157 ~vqMP~GvpVatV~I~n~~NAAl~Aa~IL~~  187 (202)
                           +||+  -   ..+.-||.++.+.+.-
T Consensus       137 -----Sgvf--A---~~P~~aa~l~~~~lkg  157 (355)
T COG3199         137 -----SGVF--A---LSPEDAARLLGAFLKG  157 (355)
T ss_pred             -----cccc--c---cChHHHHHHHHHHhcc
Confidence                 4432  1   4888999999988876

>cd06275 PBP1_PurR Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli

Probab=90.08  E-value=9.4  Score=31.31  Aligned_cols=82  Identities=9%  Similarity=0.112  Sum_probs=50.9

Q ss_pred             EEEEecCCCC---HHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchh-hhhhhccC
Q 028883           61 VGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLS-GVAAANSQ  136 (202)
Q Consensus        61 V~IimGS~SD---~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~Lp-gvvA~~T~  136 (202)
                      |+|+..+.++   ....+.+.+.++++|+  ++.+......+++..++++.+..++++.||.......... -.+.....
T Consensus         2 igvi~~~~~~~~~~~~~~gi~~~~~~~g~--~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~~l~~~~~   79 (269)
T cd06275           2 IGMLVTTSTNPFFAEVVRGVEQYCYRQGY--NLILCNTEGDPERQRSYLRMLAQKRVDGLLVMCSEYDQPLLAMLERYRH   79 (269)
T ss_pred             EEEEeCCCCcchHHHHHHHHHHHHHHcCC--EEEEEeCCCChHHHHHHHHHHHHcCCCEEEEecCCCChHHHHHHHhcCC
Confidence            6777765443   2334566677788885  5556666778888888888888888886666443222211 22222346


Q ss_pred             CcEEEecC
Q 028883          137 ILVIRVPL  144 (202)
Q Consensus       137 ~PVIgVP~  144 (202)
                      .||+-+-.
T Consensus        80 ipvV~i~~   87 (269)
T cd06275          80 IPMVVMDW   87 (269)
T ss_pred             CCEEEEec
Confidence            78886643

Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. This dimeric PurR belongs to the LacI-GalR family of transcription regulators and is activated to bind to DNA operator sites by initially binding either of high affinity corepressors, hypoxanthine or guanine. PurR is composed of two functional domains: aan N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the purine transcription repressor undergoes a

>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems

Probab=89.80  E-value=5.9  Score=31.63  Aligned_cols=82  Identities=15%  Similarity=0.194  Sum_probs=54.2

Q ss_pred             EEEEecCCCC---HHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhh--cc
Q 028883           61 VGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAA--NS  135 (202)
Q Consensus        61 V~IimGS~SD---~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~--~T  135 (202)
                      |+++.-..++   ....+.+...++++|+  ++.+...+..++...+.++++..++++.+|+.......+. .+.-  ..
T Consensus         2 ig~v~~~~~~~~~~~~~~g~~~~~~~~g~--~l~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~~~~~~~-~~~~l~~~   78 (264)
T cd01537           2 IGVLVPDLDNPFFAQVLKGIEEAAKAAGY--QVLLANSQNDAEKQLSALENLIARGVDGIIIAPSDLTAPT-IVKLARKA   78 (264)
T ss_pred             eEEEEcCCCChHHHHHHHHHHHHHHHcCC--eEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecCCCcchh-HHHHhhhc
Confidence            5666644322   3344555566777886  5666667778888888888888888998888766655554 3333  35


Q ss_pred             CCcEEEecCC
Q 028883          136 QILVIRVPLL  145 (202)
Q Consensus       136 ~~PVIgVP~~  145 (202)
                      ..|||.+-..
T Consensus        79 ~ip~v~~~~~   88 (264)
T cd01537          79 GIPVVLVDRD   88 (264)
T ss_pred             CCCEEEeccC
Confidence            6899987543

Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem

>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems

Probab=89.53  E-value=4.3  Score=33.71  Aligned_cols=81  Identities=15%  Similarity=0.163  Sum_probs=52.4

Q ss_pred             eEEEEecCCCC---HHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhh--c
Q 028883           60 IVGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAA--N  134 (202)
Q Consensus        60 ~V~IimGS~SD---~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~--~  134 (202)
                      +|++++...++   ...++.+.+.+++.|+  ++.+......++.-.++++.+..++++.||..+.-...+.-.+.-  .
T Consensus         1 ~igv~~~~~~~~~~~~~~~~i~~~~~~~g~--~v~~~~~~~~~~~~~~~i~~~~~~~~Dgiii~~~~~~~~~~~i~~~~~   78 (282)
T cd06318           1 KIGFSQYTLNSPFFAALTEAAKAHAKALGY--ELISTDAQGDLTKQIADVEDLLTRGVNVLIINPVDPEGLVPAVAAAKA   78 (282)
T ss_pred             CeeEEeccccCHHHHHHHHHHHHHHHHcCC--EEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEecCCccchHHHHHHHHH
Confidence            47778776665   2234455667777875  566667777888888889989888998777765443333333322  2


Q ss_pred             cCCcEEEe
Q 028883          135 SQILVIRV  142 (202)
Q Consensus       135 T~~PVIgV  142 (202)
                      -..|||-+
T Consensus        79 ~~iPvV~~   86 (282)
T cd06318          79 AGVPVVVV   86 (282)
T ss_pred             CCCCEEEe
Confidence            45677754

Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.

>cd01575 PBP1_GntR Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators

Probab=89.43  E-value=10  Score=30.87  Aligned_cols=78  Identities=12%  Similarity=0.079  Sum_probs=51.0

Q ss_pred             EEEEecCCCC---HHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhh--hcc
Q 028883           61 VGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAA--ANS  135 (202)
Q Consensus        61 V~IimGS~SD---~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA--~~T  135 (202)
                      |++|.-+.++   ....+.+.+.++++|+  ++.+......+++..++++.+..++++.||.......  ...+.  -..
T Consensus         2 Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~~--~~~~~~~~~~   77 (268)
T cd01575           2 VAVLVPSLSNSVFADVLQGISDVLEAAGY--QLLLGNTGYSPEREEELLRTLLSRRPAGLILTGLEHT--ERTRQLLRAA   77 (268)
T ss_pred             EEEEeCCCcchhHHHHHHHHHHHHHHcCC--EEEEecCCCCchhHHHHHHHHHHcCCCEEEEeCCCCC--HHHHHHHHhc
Confidence            5566644333   3344566777888885  5666667778888888888888888887777654432  22332  234


Q ss_pred             CCcEEEe
Q 028883          136 QILVIRV  142 (202)
Q Consensus       136 ~~PVIgV  142 (202)
                      ..|||.+
T Consensus        78 ~ipvv~~   84 (268)
T cd01575          78 GIPVVEI   84 (268)
T ss_pred             CCCEEEE
Confidence            6799986

This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding,

>PRK13337 putative lipid kinase; Reviewed

Probab=89.34  E-value=1.9  Score=38.17  Aligned_cols=75  Identities=16%  Similarity=0.125  Sum_probs=51.9

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhhcc---CCcEEEe
Q 028883           66 ESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANS---QILVIRV  142 (202)
Q Consensus        66 GS~SD~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~~T---~~PVIgV  142 (202)
                      |+.......++....|++.|++|++....   .+....++++++..++.++ |+++|+.+.|-.++.++.   ..|.+|+
T Consensus        13 G~~~~~~~~~~~~~~l~~~~~~~~~~~t~---~~~~a~~~a~~~~~~~~d~-vvv~GGDGTl~~vv~gl~~~~~~~~lgi   88 (304)
T PRK13337         13 GRELFKKNLPDVLQKLEQAGYETSAHATT---GPGDATLAAERAVERKFDL-VIAAGGDGTLNEVVNGIAEKENRPKLGI   88 (304)
T ss_pred             cchhHHHHHHHHHHHHHHcCCEEEEEEec---CCCCHHHHHHHHHhcCCCE-EEEEcCCCHHHHHHHHHhhCCCCCcEEE
Confidence            44343456677888899999988887665   3466667777776677776 457799999999998754   2244555


Q ss_pred             cC
Q 028883          143 PL  144 (202)
Q Consensus       143 P~  144 (202)
                      =+
T Consensus        89 iP   90 (304)
T PRK13337         89 IP   90 (304)
T ss_pred             EC
Confidence            33

>PRK00861 putative lipid kinase; Reviewed

Probab=89.33  E-value=2.5  Score=37.20  Aligned_cols=76  Identities=25%  Similarity=0.195  Sum_probs=52.0

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhhccC--CcEEEec
Q 028883           66 ESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQ--ILVIRVP  143 (202)
Q Consensus        66 GS~SD~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~~T~--~PVIgVP  143 (202)
                      |+.+.....+++...|++ +++|++..+...   ....++++++...+.++|| ++|+.+.|-.++.++..  .|+--+|
T Consensus        14 G~~~~~~~~~~i~~~l~~-~~~~~~~~t~~~---~~a~~~a~~~~~~~~d~vv-~~GGDGTl~evv~~l~~~~~~lgviP   88 (300)
T PRK00861         14 GQGNPEVDLALIRAILEP-EMDLDIYLTTPE---IGADQLAQEAIERGAELII-ASGGDGTLSAVAGALIGTDIPLGIIP   88 (300)
T ss_pred             CCCchhhhHHHHHHHHHh-cCceEEEEccCC---CCHHHHHHHHHhcCCCEEE-EECChHHHHHHHHHHhcCCCcEEEEc
Confidence            555555567788888887 578888877654   3456667777667778766 58999999999998743  3433355


Q ss_pred             CCC
Q 028883          144 LLS  146 (202)
Q Consensus       144 ~~~  146 (202)
                      .-+
T Consensus        89 ~GT   91 (300)
T PRK00861         89 RGT   91 (300)
T ss_pred             CCc
Confidence            443

>cd06298 PBP1_CcpA_like Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation

Probab=89.30  E-value=11  Score=30.87  Aligned_cols=79  Identities=13%  Similarity=0.105  Sum_probs=49.5

Q ss_pred             EEEEecCCCC---HHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCC-cCchhhhhhhccC
Q 028883           61 VGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGV-EAHLSGVAAANSQ  136 (202)
Q Consensus        61 V~IimGS~SD---~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~-aa~LpgvvA~~T~  136 (202)
                      |+++..+..|   ..+.+.+.+.+++.|.  ++.+...+..++...++++.+...+++.+|..... ....-..+ ....
T Consensus         2 i~vi~~~~~~~~~~~~~~~~~~~~~~~g~--~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~~l-~~~~   78 (268)
T cd06298           2 VGVIIPDITNSYFAELARGIDDIATMYKY--NIILSNSDNDKEKELKVLNNLLAKQVDGIIFMGGKISEEHREEF-KRSP   78 (268)
T ss_pred             EEEEECCCcchHHHHHHHHHHHHHHHcCC--eEEEEeCCCCHHHHHHHHHHHHHhcCCEEEEeCCCCcHHHHHHH-hcCC
Confidence            6777765444   3344566677778875  55566678889988888888877788877765432 21111111 2346


Q ss_pred             CcEEEe
Q 028883          137 ILVIRV  142 (202)
Q Consensus       137 ~PVIgV  142 (202)
                      .|||.+
T Consensus        79 ipvV~~   84 (268)
T cd06298          79 TPVVLA   84 (268)
T ss_pred             CCEEEE
Confidence            788876

Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. In gram-positive bacteria, CCR is controlled by HPr, a phosphoenolpyruvate:sugar phsophotrasnferase system (PTS) and a transcriptional regulator CcpA. Moreover, CcpA can regulate sporulation and antibiotic resistance as well as play a role in virulence development of certain pathogens such as the group A streptococcus. The ligand binding domain of CcpA is a member of the LacI-GalR family of bacterial transcription regulators.

>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily

Probab=89.28  E-value=3.9  Score=33.68  Aligned_cols=81  Identities=10%  Similarity=0.099  Sum_probs=54.4

Q ss_pred             eEEEEecCCCC---HHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhh--c
Q 028883           60 IVGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAA--N  134 (202)
Q Consensus        60 ~V~IimGS~SD---~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~--~  134 (202)
                      +|+++..+.+|   ....+.+.+.++++|+.+.+  ...=..|+...++++.+..++++.||...+........+.-  .
T Consensus         1 ~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~--~~~~~~~~~~~~~l~~~~~~~vdgii~~~~~~~~~~~~i~~~~~   78 (273)
T cd06305           1 RIAVVRYGGSGDFDQAYLAGTKAEAEALGGDLRV--YDAGGDDAKQADQIDQAIAQKVDAIIIQHGRAEVLKPWVKRALD   78 (273)
T ss_pred             CeEEEeecCCCcHHHHHHHHHHHHHHHcCCEEEE--ECCCCCHHHHHHHHHHHHHcCCCEEEEecCChhhhHHHHHHHHH
Confidence            47888876666   23456667778889876554  44445777777888887777899888887655444444432  3


Q ss_pred             cCCcEEEe
Q 028883          135 SQILVIRV  142 (202)
Q Consensus       135 T~~PVIgV  142 (202)
                      -..|||.+
T Consensus        79 ~~ipvV~~   86 (273)
T cd06305          79 AGIPVVAF   86 (273)
T ss_pred             cCCCEEEe
Confidence            45788876

Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.

>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators

Probab=89.22  E-value=6.7  Score=32.19  Aligned_cols=78  Identities=14%  Similarity=0.139  Sum_probs=51.3

Q ss_pred             EEEEecCCCC---HHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhh--hcc
Q 028883           61 VGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAA--ANS  135 (202)
Q Consensus        61 V~IimGS~SD---~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA--~~T  135 (202)
                      |+|+.-+.+|   ....+.+.+.++++|+  .+-+.+....+++..++++...+++++.+|......  .+-++.  -..
T Consensus         2 i~vv~p~~~~~~~~~~~~~i~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~--~~~~~~~l~~~   77 (268)
T cd06273           2 IGAIVPTLDNAIFARVIQAFQETLAAHGY--TLLVASSGYDLDREYAQARKLLERGVDGLALIGLDH--SPALLDLLARR   77 (268)
T ss_pred             eEEEeCCCCCchHHHHHHHHHHHHHHCCC--EEEEecCCCCHHHHHHHHHHHHhcCCCEEEEeCCCC--CHHHHHHHHhC
Confidence            6777765554   3445677788888985  555567778888888888888887888777653321  122222  235


Q ss_pred             CCcEEEe
Q 028883          136 QILVIRV  142 (202)
Q Consensus       136 ~~PVIgV  142 (202)
                      ..||+.+
T Consensus        78 ~iPvv~~   84 (268)
T cd06273          78 GVPYVAT   84 (268)
T ss_pred             CCCEEEE
Confidence            6898876

This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational

>cd06323 PBP1_ribose_binding Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs

Probab=89.13  E-value=11  Score=30.73  Aligned_cols=80  Identities=16%  Similarity=0.306  Sum_probs=51.0

Q ss_pred             EEEEecCCCC---HHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhh--cc
Q 028883           61 VGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAA--NS  135 (202)
Q Consensus        61 V~IimGS~SD---~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~--~T  135 (202)
                      |++|..+-+|   ....+.+.+.++++|+  ++.+......+++..++++++..++++.+|...-........+.-  .-
T Consensus         2 I~vv~~~~~~~~~~~~~~~i~~~~~~~g~--~v~~~~~~~~~~~~~~~~~~~~~~~~dgii~~~~~~~~~~~~l~~l~~~   79 (268)
T cd06323           2 IGLSVSTLNNPFFVTLKDGAQKEAKELGY--ELTVLDAQNDAAKQLNDIEDLITRGVDAIIINPTDSDAVVPAVKAANEA   79 (268)
T ss_pred             eeEecccccCHHHHHHHHHHHHHHHHcCc--eEEecCCCCCHHHHHHHHHHHHHcCCCEEEEcCCChHHHHHHHHHHHHC
Confidence            6677766555   4455677788888875  555666566888888888888777788766654332222233332  23


Q ss_pred             CCcEEEe
Q 028883          136 QILVIRV  142 (202)
Q Consensus       136 ~~PVIgV  142 (202)
                      ..|||.+
T Consensus        80 ~ipvv~~   86 (268)
T cd06323          80 GIPVFTI   86 (268)
T ss_pred             CCcEEEE
Confidence            5688766

Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Members of this group are belonging to the type I periplasmic binding protein superfamily, whose members are involved in chemotaxis, ATP-binding cassette transport, and intercellular communication in central nervous system. The thermophilic and mesophilic ribose-binding proteins are structurally very similar, but differ substantially in thermal stability.

>TIGR02189 GlrX-like_plant Glutaredoxin-like family

Probab=89.00  E-value=1.4  Score=33.19  Aligned_cols=74  Identities=9%  Similarity=-0.027  Sum_probs=49.2

Q ss_pred             eEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhhccCCcE
Q 028883           60 IVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQILV  139 (202)
Q Consensus        60 ~V~IimGS~SD~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~~T~~PV  139 (202)
                      .|.|.+  .+.=|.+.++.+.|+++|++|++.-+.-+  |+. .++.+.+.+                   ..+..+.|+
T Consensus         9 ~Vvvys--k~~Cp~C~~ak~~L~~~~i~~~~vdid~~--~~~-~~~~~~l~~-------------------~tg~~tvP~   64 (99)
T TIGR02189         9 AVVIFS--RSSCCMCHVVKRLLLTLGVNPAVHEIDKE--PAG-KDIENALSR-------------------LGCSPAVPA   64 (99)
T ss_pred             CEEEEE--CCCCHHHHHHHHHHHHcCCCCEEEEcCCC--ccH-HHHHHHHHH-------------------hcCCCCcCe
Confidence            355544  46789999999999999999886555433  332 222222111                   236788899


Q ss_pred             EEecCCCCCCChhh-HHHhhc
Q 028883          140 IRVPLLSEDWSEDD-VINSIR  159 (202)
Q Consensus       140 IgVP~~~~~l~G~D-LlS~vq  159 (202)
                      |=  +.+..++|.| |..+.+
T Consensus        65 Vf--i~g~~iGG~ddl~~l~~   83 (99)
T TIGR02189        65 VF--VGGKLVGGLENVMALHI   83 (99)
T ss_pred             EE--ECCEEEcCHHHHHHHHH
Confidence            85  4456789999 888876

This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.

>cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation

Probab=88.89  E-value=12  Score=30.77  Aligned_cols=78  Identities=12%  Similarity=0.148  Sum_probs=52.2

Q ss_pred             EEEEecCCC---CHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhh--hcc
Q 028883           61 VGIIMESDL---DLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAA--ANS  135 (202)
Q Consensus        61 V~IimGS~S---D~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA--~~T  135 (202)
                      |+|+.-+.+   .....+.+.+.++++|  |++.+......++...++++.+..++++.+|........  ..+-  ..-
T Consensus         2 i~vi~~~~~~~~~~~~~~gi~~~~~~~g--~~~~~~~~~~~~~~~~~~i~~l~~~~~dgiii~~~~~~~--~~~~~~~~~   77 (270)
T cd06296           2 IGLVFPDLDSPWASEVLRGVEEAAAAAG--YDVVLSESGRRTSPERQWVERLSARRTDGVILVTPELTS--AQRAALRRT   77 (270)
T ss_pred             eEEEECCCCCccHHHHHHHHHHHHHHcC--CeEEEecCCCchHHHHHHHHHHHHcCCCEEEEecCCCCh--HHHHHHhcC
Confidence            566765433   3556667778888887  467777888888888888888888888877776544221  1222  234


Q ss_pred             CCcEEEe
Q 028883          136 QILVIRV  142 (202)
Q Consensus       136 ~~PVIgV  142 (202)
                      ..|||.+
T Consensus        78 ~ipvV~i   84 (270)
T cd06296          78 GIPFVVV   84 (270)
T ss_pred             CCCEEEE
Confidence            5688775

This group includes the ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.

>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea

Probab=88.78  E-value=4  Score=30.00  Aligned_cols=53  Identities=30%  Similarity=0.367  Sum_probs=35.5

Q ss_pred             HHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCch
Q 028883           72 PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHL  127 (202)
Q Consensus        72 ~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~L  127 (202)
                      ...+++.+.++++|++++..+...+...+.+.+++   ++.++++||.+......+
T Consensus        56 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~~~a---~~~~~dlIV~G~~~~~~~  108 (132)
T cd01988          56 KLLRQAERIAASLGVPVHTIIRIDHDIASGILRTA---KERQADLIIMGWHGSTSL  108 (132)
T ss_pred             HHHHHHHHHhhhcCCceEEEEEecCCHHHHHHHHH---HhcCCCEEEEecCCCCCc
Confidence            44455666666789998877765554445555554   456789999888876654

Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio

>cd06321 PBP1_ABC_sugar_binding_like_11 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems

Probab=88.64  E-value=4.7  Score=33.34  Aligned_cols=82  Identities=9%  Similarity=0.153  Sum_probs=55.9

Q ss_pred             EEEEecCCCC---HHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhh--cc
Q 028883           61 VGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAA--NS  135 (202)
Q Consensus        61 V~IimGS~SD---~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~--~T  135 (202)
                      |+++....+|   ..+.+.+.+.++++|..|++.+......+++..++++.+...+++-||..........-.+.-  ..
T Consensus         2 Ig~v~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~dgiIi~~~~~~~~~~~i~~~~~~   81 (271)
T cd06321           2 IGVSVGDLGNPFFVALAKGAEAAAKKLNPGVKVTVVSADYDLNKQVSQIDNFIAAKVDLILLNAVDSKGIAPAVKRAQAA   81 (271)
T ss_pred             eEEEecccCCHHHHHHHHHHHHHHHHhCCCeEEEEccCCCCHHHHHHHHHHHHHhCCCEEEEeCCChhHhHHHHHHHHHC
Confidence            6777765555   234455667778888888888887788898888998888888888777665433222333332  24


Q ss_pred             CCcEEEe
Q 028883          136 QILVIRV  142 (202)
Q Consensus       136 ~~PVIgV  142 (202)
                      ..|||.+
T Consensus        82 ~ipvv~~   88 (271)
T cd06321          82 GIVVVAV   88 (271)
T ss_pred             CCeEEEe
Confidence            5799887

This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.

>COG0337 AroB 3-dehydroquinate synthetase [Amino acid transport and metabolism]

Probab=88.48  E-value=3.4  Score=38.91  Aligned_cols=135  Identities=20%  Similarity=0.254  Sum_probs=95.4

Q ss_pred             eEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEc---cCCCchHHHHHHHHHhhcCc---eEEEEecCC-cCchhhhhh
Q 028883           60 IVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILP---PHQNCKEALSYALSAKERGI---KIIIVGDGV-EAHLSGVAA  132 (202)
Q Consensus        60 ~V~IimGS~SD~~v~~~a~~~L~~~gi~~ev~V~S---aHRtp~~l~~~~~~~~~~g~---~ViIa~AG~-aa~LpgvvA  132 (202)
                      ++.||+=.+-.--+.++....|+..|+..+..++.   .+++.+.+.++.+.+.+.++   +.+|+..|+ -+-|+|++|
T Consensus        35 k~~ivtd~~v~~~y~~~~~~~l~~~g~~v~~~~lp~GE~~Ksl~~~~~i~~~ll~~~~~R~s~iialGGGvigDlaGF~A  114 (360)
T COG0337          35 KVAIVTDETVAPLYLEKLLATLEAAGVEVDSIVLPDGEEYKSLETLEKIYDALLEAGLDRKSTLIALGGGVIGDLAGFAA  114 (360)
T ss_pred             eEEEEECchhHHHHHHHHHHHHHhcCCeeeEEEeCCCcccccHHHHHHHHHHHHHcCCCCCcEEEEECChHHHHHHHHHH
Confidence            78888877777778999999999999988766665   68888888887777766555   578887777 688999999


Q ss_pred             h--ccCCcEEEecCCC-----CCCCh---------hhHHHhhcCCCCCeeeEEecC---------ChhhHHHH-HHHHHc
Q 028883          133 A--NSQILVIRVPLLS-----EDWSE---------DDVINSIRMPSHVQVASVPRN---------NAKNAALY-AVKVLG  186 (202)
Q Consensus       133 ~--~T~~PVIgVP~~~-----~~l~G---------~DLlS~vqMP~GvpVatV~I~---------n~~NAAl~-Aa~IL~  186 (202)
                      |  +--.+.|.||+.-     ++.+|         -+|....-.|..|    . ||         .-+.+++. +++.--
T Consensus       115 aty~RGv~fiqiPTTLLAqVDSSVGGKtgIN~~~gKNmIGaF~qP~aV----i-~D~~~L~TLp~re~~~G~AEvIK~g~  189 (360)
T COG0337         115 ATYMRGVRFIQIPTTLLAQVDSSVGGKTGINHPLGKNLIGAFYQPKAV----L-IDTDFLKTLPPRELRAGMAEVIKYGL  189 (360)
T ss_pred             HHHHcCCCeEeccchHHHHhhcccccccccCCCCCcceeecccCCcEE----E-EchHHhccCCHHHHHHhHHHHHHHhh
Confidence            9  5789999999961     12222         2234444445532    2 33         33445543 345555


Q ss_pred             cCCHHHHHHHHHH
Q 028883          187 IADEDLLERIRKY  199 (202)
Q Consensus       187 ~~d~~l~~kl~~~  199 (202)
                      +.|+++++.|++.
T Consensus       190 I~D~~~f~~Le~~  202 (360)
T COG0337         190 IADPEFFDWLEEN  202 (360)
T ss_pred             hcCHHHHHHHHHH
Confidence            6788888888775

>TIGR03566 FMN_reduc_MsuE FMN reductase, MsuE subfamily

Probab=88.43  E-value=12  Score=30.33  Aligned_cols=129  Identities=12%  Similarity=0.056  Sum_probs=69.2

Q ss_pred             eEEEEecCCCC----HHHHHHHHHHHH-HhCCCeEEEEEccCC-------------CchHHHHHHHHHhhcCceEEEEec
Q 028883           60 IVGIIMESDLD----LPVMNDAARTLS-DFGVPYEIKILPPHQ-------------NCKEALSYALSAKERGIKIIIVGD  121 (202)
Q Consensus        60 ~V~IimGS~SD----~~v~~~a~~~L~-~~gi~~ev~V~SaHR-------------tp~~l~~~~~~~~~~g~~ViIa~A  121 (202)
                      +|.+|.||.+.    ...++.+.+.++ +.|..++  +...+.             .|+.+.++.+...+  ++.||.+.
T Consensus         1 kIl~i~GS~r~~s~t~~l~~~~~~~l~~~~g~ev~--~idL~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--AD~iIi~t   76 (174)
T TIGR03566         1 KVVGVSGSLTRPSRTLALVEALVAELAARLGISPR--TIDLADLAPSLGGALWRSQLPPDAERILQAIES--ADLLVVGS   76 (174)
T ss_pred             CEEEEECCCCCCChHHHHHHHHHHHHHHhcCCeEE--EEEhhhcChhhccccccCCCCHHHHHHHHHHHH--CCEEEEEC
Confidence            58899999976    556666666664 4565433  333222             46778888887766  66666654


Q ss_pred             C-----CcCchhhhh-----hhccCCcEEEecCCCCCCCh------hh-HHHhhcCCCCCeeeEEecCChhhHHHHHHHH
Q 028883          122 G-----VEAHLSGVA-----AANSQILVIRVPLLSEDWSE------DD-VINSIRMPSHVQVASVPRNNAKNAALYAVKV  184 (202)
Q Consensus       122 G-----~aa~Lpgvv-----A~~T~~PVIgVP~~~~~l~G------~D-LlS~vqMP~GvpVatV~I~n~~NAAl~Aa~I  184 (202)
                      =     .++.|=..+     ..+..+||+-+-+.++..+|      +. ++..+.+.. +|..+...+..+.       -
T Consensus        77 P~Y~~s~~~~LKn~lD~~~~~~l~~K~~~~v~~~g~~~~~~~~~~~l~~~~~~l~~~~-~~~~~~~~~~~~~-------~  148 (174)
T TIGR03566        77 PVYRGSYTGLFKHLFDLVDPNALIGKPVLLAATGGSERHALMVEHQLRPLFGFFQALT-LPTGVYASDADFA-------D  148 (174)
T ss_pred             CcCcCcCcHHHHHHHHhcCHhHhCCCEEEEEEecCCccchHHHHHHHHHHHHHhCccc-ccceEEEEhhhhc-------c
Confidence            3     333333333     23567888777555443333      33 444555411 1221111111111       1


Q ss_pred             HccCCHHHHHHHHHHH
Q 028883          185 LGIADEDLLERIRKYV  200 (202)
Q Consensus       185 L~~~d~~l~~kl~~~~  200 (202)
                      -.+.|++++++|+..-
T Consensus       149 g~l~d~~~~~~l~~~~  164 (174)
T TIGR03566       149 YRLASEALRARIALAV  164 (174)
T ss_pred             ccccCHHHHHHHHHHH
Confidence            2246888888887653

Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the NADH-dependent enzyme MsuE from Pseudomonas aeruginosa, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. The NADP-dependent enzyme from E. coli is outside the scope of this model.

>PRK13054 lipid kinase; Reviewed

Probab=88.41  E-value=3.2  Score=36.60  Aligned_cols=61  Identities=20%  Similarity=0.273  Sum_probs=45.1

Q ss_pred             HHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhhcc
Q 028883           71 LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANS  135 (202)
Q Consensus        71 ~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~~T  135 (202)
                      .....+....|++-|+.|++...   +.+....++++++...+.+++| ++|+.+.|-.|+.++.
T Consensus        17 ~~~~~~~~~~l~~~g~~~~v~~t---~~~~~a~~~a~~~~~~~~d~vv-v~GGDGTl~evv~~l~   77 (300)
T PRK13054         17 NEELREAVGLLREEGHTLHVRVT---WEKGDAARYVEEALALGVATVI-AGGGDGTINEVATALA   77 (300)
T ss_pred             hHHHHHHHHHHHHcCCEEEEEEe---cCCCcHHHHHHHHHHcCCCEEE-EECCccHHHHHHHHHH
Confidence            45666777789999988777443   3355567778777667777655 7899999999998864

>COG2984 ABC-type uncharacterized transport system, periplasmic component [General function prediction only]

Probab=87.82  E-value=2.5  Score=39.28  Aligned_cols=80  Identities=18%  Similarity=0.101  Sum_probs=65.0

Q ss_pred             eEEEEe--cCCCCHHHHHHHHHHHHHhCC-CeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhhccC
Q 028883           60 IVGIIM--ESDLDLPVMNDAARTLSDFGV-PYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQ  136 (202)
Q Consensus        60 ~V~Iim--GS~SD~~v~~~a~~~L~~~gi-~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~~T~  136 (202)
                      +|+|..  --.+=....+-+.+.|+++|. ..++.+-++|-.+....++++++..++.+|||++++-+|-  .+++.-.+
T Consensus        32 ~VaI~~~veHpaLd~~~~G~~~aLk~~G~~n~~i~~~na~~~~~~a~~iarql~~~~~dviv~i~tp~Aq--~~~s~~~~  109 (322)
T COG2984          32 TVAITQFVEHPALDAAREGVKEALKDAGYKNVKIDYQNAQGDLGTAAQIARQLVGDKPDVIVAIATPAAQ--ALVSATKT  109 (322)
T ss_pred             eEEEEEeecchhHHHHHHHHHHHHHhcCccCeEEEeecCCCChHHHHHHHHHhhcCCCcEEEecCCHHHH--HHHHhcCC
Confidence            466643  344445677888899999999 7889999999999999999999999999999999887654  36666677


Q ss_pred             CcEEE
Q 028883          137 ILVIR  141 (202)
Q Consensus       137 ~PVIg  141 (202)
                      +||+-
T Consensus       110 iPVV~  114 (322)
T COG2984         110 IPVVF  114 (322)
T ss_pred             CCEEE
Confidence            89984

>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators

Probab=87.47  E-value=10  Score=30.93  Aligned_cols=78  Identities=12%  Similarity=0.106  Sum_probs=50.3

Q ss_pred             EEEEecCCCC---HHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhh--cc
Q 028883           61 VGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAA--NS  135 (202)
Q Consensus        61 V~IimGS~SD---~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~--~T  135 (202)
                      |+|+....++   ....+...+.++++|+  ++.+...++.+++..++++++.+.+++.+|...... . +..+..  ..
T Consensus         2 igvv~~~~~~~~~~~~~~gi~~~~~~~g~--~~~~~~~~~~~~~~~~~i~~l~~~~~dgii~~~~~~-~-~~~~~~~~~~   77 (259)
T cd01542           2 IGVIVPRLDSFSTSRTVKGILAALYENGY--QMLLMNTNFSIEKEIEALELLARQKVDGIILLATTI-T-DEHREAIKKL   77 (259)
T ss_pred             eEEEecCCccchHHHHHHHHHHHHHHCCC--EEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEeCCCC-C-HHHHHHHhcC
Confidence            6777754443   2345566667777885  555666778899988999988888898777764321 1 122222  23


Q ss_pred             CCcEEEe
Q 028883          136 QILVIRV  142 (202)
Q Consensus       136 ~~PVIgV  142 (202)
                      ..|||.+
T Consensus        78 ~ipvv~~   84 (259)
T cd01542          78 NVPVVVV   84 (259)
T ss_pred             CCCEEEE
Confidence            5788876

Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding wh

>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis

Probab=87.23  E-value=5.2  Score=33.17  Aligned_cols=84  Identities=17%  Similarity=0.242  Sum_probs=52.5

Q ss_pred             eEEEEecCCCC---HHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhh--c
Q 028883           60 IVGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAA--N  134 (202)
Q Consensus        60 ~V~IimGS~SD---~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~--~  134 (202)
                      +|+||.-+.+|   ..+.+.+.+.+++.|+...+......+.++.-.+.++++..++++.+|.....+..+...+..  .
T Consensus         1 ~igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~   80 (275)
T cd06320           1 KYGVVLKTLSNEFWRSLKEGYENEAKKLGVSVDIQAAPSEGDQQGQLSIAENMINKGYKGLLFSPISDVNLVPAVERAKK   80 (275)
T ss_pred             CeeEEEecCCCHHHHHHHHHHHHHHHHhCCeEEEEccCCCCCHHHHHHHHHHHHHhCCCEEEECCCChHHhHHHHHHHHH
Confidence            46777766555   233456667778888755544444457787777888888788888777665433333333332  3


Q ss_pred             cCCcEEEec
Q 028883          135 SQILVIRVP  143 (202)
Q Consensus       135 T~~PVIgVP  143 (202)
                      -..|||.+-
T Consensus        81 ~~iPvV~~~   89 (275)
T cd06320          81 KGIPVVNVN   89 (275)
T ss_pred             CCCeEEEEC
Confidence            467998774

Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.

>PRK10481 hypothetical protein; Provisional

Probab=87.04  E-value=5.2  Score=35.15  Aligned_cols=80  Identities=15%  Similarity=0.222  Sum_probs=58.8

Q ss_pred             CeEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEcc-CCCchHHHHHHHHHhhcCce-EEEEecCCcCchhhhhhhccC
Q 028883           59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPP-HQNCKEALSYALSAKERGIK-IIIVGDGVEAHLSGVAAANSQ  136 (202)
Q Consensus        59 ~~V~IimGS~SD~~v~~~a~~~L~~~gi~~ev~V~Sa-HRtp~~l~~~~~~~~~~g~~-ViIa~AG~aa~LpgvvA~~T~  136 (202)
                      .+++|++=....   ..+..+-..++|++..+...|. +-+++.+.+.+++....|++ +++.|+|++......+.-.+.
T Consensus       130 ~riGVitP~~~q---i~~~~~kw~~~G~~v~~~~aspy~~~~~~l~~aa~~L~~~gaD~Ivl~C~G~~~~~~~~le~~lg  206 (224)
T PRK10481        130 HQVGVIVPVEEQ---LAQQAQKWQVLQKPPVFALASPYHGSEEELIDAGKELLDQGADVIVLDCLGYHQRHRDLLQKALD  206 (224)
T ss_pred             CeEEEEEeCHHH---HHHHHHHHHhcCCceeEeecCCCCCCHHHHHHHHHHhhcCCCCEEEEeCCCcCHHHHHHHHHHHC
Confidence            589999855333   3333333444588877777775 45555888888888778886 788999999777999999999


Q ss_pred             CcEEE
Q 028883          137 ILVIR  141 (202)
Q Consensus       137 ~PVIg  141 (202)
                      +|||-
T Consensus       207 ~PVI~  211 (224)
T PRK10481        207 VPVLL  211 (224)
T ss_pred             cCEEc
Confidence            99983

>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily

Probab=86.90  E-value=6.5  Score=32.51  Aligned_cols=84  Identities=12%  Similarity=0.212  Sum_probs=57.5

Q ss_pred             eEEEEecCCCCH---HHHHHHHHHHHHh---CCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhh-
Q 028883           60 IVGIIMESDLDL---PVMNDAARTLSDF---GVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAA-  132 (202)
Q Consensus        60 ~V~IimGS~SD~---~v~~~a~~~L~~~---gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA-  132 (202)
                      +|+++....+|.   ...+.+.+.++++   |..+++.+....-.++...+.++++..++++.||........+...+. 
T Consensus         1 ~Ig~i~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~l~i~~~~~~~~~~~~~~~~~~~~~vdgiIi~~~~~~~~~~~l~~   80 (272)
T cd06300           1 KIGLSNSYAGNTWRAQMLDEFKAQAKELKKAGLISEFIVTSADGDVAQQIADIRNLIAQGVDAIIINPASPTALNPVIEE   80 (272)
T ss_pred             CeEEeccccCChHHHHHHHHHHHHHHhhhccCCeeEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhhhHHHHHH
Confidence            467777555542   3455666777788   877788888776688888888888888889888887755443443332 


Q ss_pred             -hccCCcEEEec
Q 028883          133 -ANSQILVIRVP  143 (202)
Q Consensus       133 -~~T~~PVIgVP  143 (202)
                       ..-..|||.+-
T Consensus        81 ~~~~~iPvv~~~   92 (272)
T cd06300          81 ACEAGIPVVSFD   92 (272)
T ss_pred             HHHCCCeEEEEe
Confidence             23467999874

Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.

>cd06310 PBP1_ABC_sugar_binding_like_2 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems

Probab=86.49  E-value=5.8  Score=32.75  Aligned_cols=81  Identities=14%  Similarity=0.195  Sum_probs=50.7

Q ss_pred             eEEEEecCCCC---HHHHHHHHHHHHHhCCCeEEEEEc--cCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhh-
Q 028883           60 IVGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILP--PHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAA-  133 (202)
Q Consensus        60 ~V~IimGS~SD---~~v~~~a~~~L~~~gi~~ev~V~S--aHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~-  133 (202)
                      +|+||...-+|   ....+.+.+.+++.|.  .+.+..  ....+++..++++++...+++-+|........+...+.. 
T Consensus         1 ~Igvi~~~~~~~~~~~~~~g~~~~~~~~g~--~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgvii~~~~~~~~~~~l~~~   78 (273)
T cd06310           1 KIALVPKGTTSDFWQAVKAGAEAAAKELGV--KVTFQGPASETDVAGQVNLLENAIARGPDAILLAPTDAKALVPPLKEA   78 (273)
T ss_pred             CeEEEecCCCcHHHHHHHHHHHHHHHHcCC--EEEEecCccCCCHHHHHHHHHHHHHhCCCEEEEcCCChhhhHHHHHHH
Confidence            57888765444   2334555566777875  455543  357888888888888777788777654433323344443 


Q ss_pred             -ccCCcEEEe
Q 028883          134 -NSQILVIRV  142 (202)
Q Consensus       134 -~T~~PVIgV  142 (202)
                       ....|||.+
T Consensus        79 ~~~~ipvV~~   88 (273)
T cd06310          79 KDAGIPVVLI   88 (273)
T ss_pred             HHCCCCEEEe
Confidence             345688876

Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.

>TIGR02180 GRX_euk Glutaredoxin

Probab=86.18  E-value=2.8  Score=28.95  Aligned_cols=69  Identities=17%  Similarity=0.153  Sum_probs=48.4

Q ss_pred             CCCCHHHHHHHHHHHHHhCCC--eEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhhccCCcEEEecC
Q 028883           67 SDLDLPVMNDAARTLSDFGVP--YEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQILVIRVPL  144 (202)
Q Consensus        67 S~SD~~v~~~a~~~L~~~gi~--~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~~T~~PVIgVP~  144 (202)
                      +.+.=|.++++...|++++++  |++.-+......+.+.+++.+.                      .+....|+|=  +
T Consensus         5 ~~~~Cp~C~~~~~~L~~~~i~~~~~~~~v~~~~~~~~~~~~l~~~----------------------~g~~~vP~v~--i   60 (84)
T TIGR02180         5 SKSYCPYCKKAKEILAKLNVKPAYEVVELDQLSNGSEIQDYLEEI----------------------TGQRTVPNIF--I   60 (84)
T ss_pred             ECCCChhHHHHHHHHHHcCCCCCCEEEEeeCCCChHHHHHHHHHH----------------------hCCCCCCeEE--E
Confidence            456678999999999999998  7766666666666666554321                      2345677763  4


Q ss_pred             CCCCCChhh-HHHhhc
Q 028883          145 LSEDWSEDD-VINSIR  159 (202)
Q Consensus       145 ~~~~l~G~D-LlS~vq  159 (202)
                      .+..++|.| +..+.+
T Consensus        61 ~g~~igg~~~~~~~~~   76 (84)
T TIGR02180        61 NGKFIGGCSDLLALYK   76 (84)
T ss_pred             CCEEEcCHHHHHHHHH
Confidence            455678888 888876

This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.

>cd00578 L-fuc_L-ara-isomerases L-fucose isomerase (FucIase) and L-arabinose isomerase (AI) family; composed of FucIase, AI and similar proteins

Probab=86.09  E-value=13  Score=34.79  Aligned_cols=85  Identities=18%  Similarity=0.090  Sum_probs=54.8

Q ss_pred             CeEEEEecCCC---CHH------HHHHHHHHHHHhCCCeEEEEEccC-CCchHHHHHHHHHhhcCceEEEE--ecCCcCc
Q 028883           59 PIVGIIMESDL---DLP------VMNDAARTLSDFGVPYEIKILPPH-QNCKEALSYALSAKERGIKIIIV--GDGVEAH  126 (202)
Q Consensus        59 ~~V~IimGS~S---D~~------v~~~a~~~L~~~gi~~ev~V~SaH-Rtp~~l~~~~~~~~~~g~~ViIa--~AG~aa~  126 (202)
                      ++|+++.+|..   ..+      ..++..+.|++.+  +++...+.= .+++...+..+.+++.+++.+|+  ..+...+
T Consensus         1 ~~ig~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~vv~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~tf~~~~   78 (452)
T cd00578           1 PKIGFVTGSQHLYGEELLEQVEEYAREVADLLNELP--VEVVDKPEVTGTPDEARKAAEEFNEANCDGLIVWMHTFGPAK   78 (452)
T ss_pred             CEEEEEEecccccChhHHHHHHHHHHHHHHHHhcCC--ceEEecCcccCCHHHHHHHHHHHhhcCCcEEEEcccccccHH
Confidence            47899999988   332      3344455555554  455444433 48889999999998888887766  4555555


Q ss_pred             hhhhhhhccCCcEEEecCC
Q 028883          127 LSGVAAANSQILVIRVPLL  145 (202)
Q Consensus       127 LpgvvA~~T~~PVIgVP~~  145 (202)
                      +-.-.+....+||+-.-+.
T Consensus        79 ~~~~~~~~~~~Pvll~a~~   97 (452)
T cd00578          79 MWIAGLSELRKPVLLLATQ   97 (452)
T ss_pred             HHHHHHHhcCCCEEEEeCC
Confidence            4444445678898765443

FucIase converts L-fucose, an aldohexose, to its ketose form, which prepares it for aldol cleavage (similar to the isomerization of glucose in glycolysis). L-fucose (or 6-deoxy-L-galactose) is found in various oligo- and polysaccharides in mammals, bacteria and plants. AI catalyzes the isomerization of L-arabinose to L-ribulose, the first reaction in its conversion to D-xylulose-5-phosphate, an intermediate in the pentose phosphate pathway, which allows L-arabinose to be used as a carbon source. AI can also convert D-galactose to D-tagatose at elevated temperatures in the presence of divalent metal ions. D-tagatose, rarely found in nature, is of commercial interest as a low-calorie sugar substitute.

>cd01538 PBP1_ABC_xylose_binding Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily

Probab=85.23  E-value=13  Score=31.56  Aligned_cols=80  Identities=14%  Similarity=0.277  Sum_probs=53.2

Q ss_pred             EEEEecCCCC---HHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhh--hcc
Q 028883           61 VGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAA--ANS  135 (202)
Q Consensus        61 V~IimGS~SD---~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA--~~T  135 (202)
                      |+|+....+|   ....+.+.+.++++|+  ++.+......+++..++++++..++.+.||..+.-...+...+.  ..-
T Consensus         2 I~vi~~~~~~~~~~~~~~gi~~~a~~~g~--~~~~~~~~~~~~~~~~~i~~~~~~~vdgiii~~~~~~~~~~~l~~l~~~   79 (288)
T cd01538           2 IGLSLPTKTEERWIRDRPNFEAALKELGA--EVIVQNANGDPAKQISQIENMIAKGVDVLVIAPVDGEALASAVEKAADA   79 (288)
T ss_pred             eEEEEeCCCcHHHHHHHHHHHHHHHHcCC--EEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecCChhhHHHHHHHHHHC
Confidence            6778866555   2334566677778876  55566677788888889888888889988877643332333332  234


Q ss_pred             CCcEEEe
Q 028883          136 QILVIRV  142 (202)
Q Consensus       136 ~~PVIgV  142 (202)
                      ..|||.+
T Consensus        80 ~ipvV~~   86 (288)
T cd01538          80 GIPVIAY   86 (288)
T ss_pred             CCCEEEE
Confidence            6788876

Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic xylose-binding protein is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.

>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily

Probab=84.95  E-value=16  Score=29.17  Aligned_cols=80  Identities=13%  Similarity=0.082  Sum_probs=53.6

Q ss_pred             EEEEecCCCC---HHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhhccCC
Q 028883           61 VGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQI  137 (202)
Q Consensus        61 V~IimGS~SD---~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~~T~~  137 (202)
                      |+++.-+.++   ....+.+.+.++++|+.  +.+......+++..+.++.+..++++.||........+.--.+.....
T Consensus         2 i~~v~~~~~~~~~~~~~~g~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~~~d~iii~~~~~~~~~~~~~~~~~i   79 (264)
T cd06267           2 IGVIVPDISNPFFAELLRGIEEAAREAGYS--VLLCNSDEDPEKEREALELLLSRRVDGIILAPSRLDDELLEELAALGI   79 (264)
T ss_pred             EEEEECCCCCHHHHHHHHHHHHHHHHcCCE--EEEEcCCCCHHHHHHHHHHHHHcCcCEEEEecCCcchHHHHHHHHcCC
Confidence            5566654322   23334556666777764  455566677888888888888889999998887777665112345678


Q ss_pred             cEEEe
Q 028883          138 LVIRV  142 (202)
Q Consensus       138 PVIgV  142 (202)
                      |||.+
T Consensus        80 pvv~~   84 (264)
T cd06267          80 PVVLV   84 (264)
T ss_pred             CEEEe
Confidence            99987

Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.

>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors

Probab=84.51  E-value=21  Score=29.36  Aligned_cols=80  Identities=11%  Similarity=0.172  Sum_probs=52.4

Q ss_pred             EEEEecCCCC---HHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCC---cCchhhhhhh-
Q 028883           61 VGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGV---EAHLSGVAAA-  133 (202)
Q Consensus        61 V~IimGS~SD---~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~---aa~LpgvvA~-  133 (202)
                      |+||+.+..+   ....+.+.+.++++|.  ++-+......+++..++++.+..++++-+|.....   ...++..+.. 
T Consensus         2 Igvi~~~~~~~~~~~~~~gi~~~~~~~g~--~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~i~~~   79 (273)
T cd06292           2 VGLLVPELSNPIFPAFAEAIEAALAQYGY--TVLLCNTYRGGVSEADYVEDLLARGVRGVVFISSLHADTHADHSHYERL   79 (273)
T ss_pred             EEEEeCCCcCchHHHHHHHHHHHHHHCCC--EEEEEeCCCChHHHHHHHHHHHHcCCCEEEEeCCCCCcccchhHHHHHH
Confidence            6777755433   2344567777788884  56677777888888899999888889877665322   1233344433 


Q ss_pred             -ccCCcEEEe
Q 028883          134 -NSQILVIRV  142 (202)
Q Consensus       134 -~T~~PVIgV  142 (202)
                       ....|||-+
T Consensus        80 ~~~~ipvV~i   89 (273)
T cd06292          80 AERGLPVVLV   89 (273)
T ss_pred             HhCCCCEEEE
Confidence             346788876

This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.

>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators

Probab=84.40  E-value=27  Score=30.37  Aligned_cols=81  Identities=14%  Similarity=0.213  Sum_probs=56.0

Q ss_pred             CeEEEEecCCCCHH---HHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcC---chhhhhh
Q 028883           59 PIVGIIMESDLDLP---VMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEA---HLSGVAA  132 (202)
Q Consensus        59 ~~V~IimGS~SD~~---v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa---~LpgvvA  132 (202)
                      ..||||.-..++--   +++.+.+.+++.|.  .+-++.....++.- ++++.+.++.++=||.. +...   +|--...
T Consensus         2 ~~IGvivp~~~npff~~ii~gIe~~a~~~Gy--~l~l~~t~~~~~~e-~~i~~l~~~~vDGiI~~-s~~~~~~~l~~~~~   77 (279)
T PF00532_consen    2 KTIGVIVPDISNPFFAEIIRGIEQEAREHGY--QLLLCNTGDDEEKE-EYIELLLQRRVDGIILA-SSENDDEELRRLIK   77 (279)
T ss_dssp             CEEEEEESSSTSHHHHHHHHHHHHHHHHTTC--EEEEEEETTTHHHH-HHHHHHHHTTSSEEEEE-SSSCTCHHHHHHHH
T ss_pred             CEEEEEECCCCCcHHHHHHHHHHHHHHHcCC--EEEEecCCCchHHH-HHHHHHHhcCCCEEEEe-cccCChHHHHHHHH
Confidence            47899999998864   44556666677765  77778888888888 99999988888744444 4433   3444443


Q ss_pred             hccCCcEEEecCC
Q 028883          133 ANSQILVIRVPLL  145 (202)
Q Consensus       133 ~~T~~PVIgVP~~  145 (202)
                      .  ..||+-+=-.
T Consensus        78 ~--~iPvV~~~~~   88 (279)
T PF00532_consen   78 S--GIPVVLIDRY   88 (279)
T ss_dssp             T--TSEEEEESS-
T ss_pred             c--CCCEEEEEec
Confidence            3  6898876544

The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....

>PRK10423 transcriptional repressor RbsR; Provisional

Probab=84.16  E-value=18  Score=30.86  Aligned_cols=84  Identities=4%  Similarity=0.077  Sum_probs=53.4

Q ss_pred             CCCeEEEEecCCCC---HHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcC-chhhhhh
Q 028883           57 DAPIVGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEA-HLSGVAA  132 (202)
Q Consensus        57 ~~~~V~IimGS~SD---~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa-~LpgvvA  132 (202)
                      +...|++++...++   ....+.+.+.+++.|.  ++.+......+++..++++.+..++++-+|....... ...-.+.
T Consensus        55 ~~~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~l~~~~vdGiI~~~~~~~~~~~~~l~  132 (327)
T PRK10423         55 QTRTIGMLITASTNPFYSELVRGVERSCFERGY--SLVLCNTEGDEQRMNRNLETLMQKRVDGLLLLCTETHQPSREIMQ  132 (327)
T ss_pred             CCCeEEEEeCCCCCCcHHHHHHHHHHHHHHcCC--EEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEeCCCcchhhHHHHH
Confidence            34679999865443   3445667777888884  5666666677888888888887888886666543322 2222333


Q ss_pred             hccCCcEEEe
Q 028883          133 ANSQILVIRV  142 (202)
Q Consensus       133 ~~T~~PVIgV  142 (202)
                      .....||+-+
T Consensus       133 ~~~~iPvV~i  142 (327)
T PRK10423        133 RYPSVPTVMM  142 (327)
T ss_pred             hcCCCCEEEE
Confidence            2235788766

>cd01541 PBP1_AraR Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators

Probab=83.95  E-value=23  Score=29.26  Aligned_cols=80  Identities=14%  Similarity=0.156  Sum_probs=52.2

Q ss_pred             EEEEecCCCCH---HHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchh---hhhh--
Q 028883           61 VGIIMESDLDL---PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLS---GVAA--  132 (202)
Q Consensus        61 V~IimGS~SD~---~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~Lp---gvvA--  132 (202)
                      |+|+..+..|.   .+.+.+.+.++++|+..  .+...-..+++-.+.++++..++++.||.....+....   ..+.  
T Consensus         2 igvv~~~~~~~~~~~~~~gi~~~~~~~g~~~--~~~~~~~~~~~~~~~i~~l~~~~vdgii~~~~~~~~~~~~~~~~~~~   79 (273)
T cd01541           2 IGVITTYISDYIFPSIIRGIESVLSEKGYSL--LLASTNNDPERERKCLENMLSQGIDGLIIEPTKSALPNPNIDLYLKL   79 (273)
T ss_pred             eEEEeCCccchhHHHHHHHHHHHHHHcCCEE--EEEeCCCCHHHHHHHHHHHHHcCCCEEEEeccccccccccHHHHHHH
Confidence            67777654443   56667788888888654  45555677888888888888888998887655432211   2222  


Q ss_pred             hccCCcEEEe
Q 028883          133 ANSQILVIRV  142 (202)
Q Consensus       133 ~~T~~PVIgV  142 (202)
                      -....|||.+
T Consensus        80 ~~~~ipvV~~   89 (273)
T cd01541          80 EKLGIPYVFI   89 (273)
T ss_pred             HHCCCCEEEE
Confidence            2345788876

Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of AraR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which i

>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=83.50  E-value=6.6  Score=27.06  Aligned_cols=69  Identities=16%  Similarity=0.151  Sum_probs=48.4

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhhccCCcEEEecCCC
Q 028883           67 SDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQILVIRVPLLS  146 (202)
Q Consensus        67 S~SD~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~~T~~PVIgVP~~~  146 (202)
                      +..+=|.++++...|++++++|+..-...+.....+.+.+++                      +.+....|++-  +.+
T Consensus         6 ~~~~Cp~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~----------------------~~g~~~~P~v~--~~g   61 (82)
T cd03419           6 SKSYCPYCKRAKSLLKELGVKPAVVELDQHEDGSEIQDYLQE----------------------LTGQRTVPNVF--IGG   61 (82)
T ss_pred             EcCCCHHHHHHHHHHHHcCCCcEEEEEeCCCChHHHHHHHHH----------------------HhCCCCCCeEE--ECC
Confidence            356779999999999999999887666666655555444432                      23557788864  345


Q ss_pred             CCCChhh-HHHhhc
Q 028883          147 EDWSEDD-VINSIR  159 (202)
Q Consensus       147 ~~l~G~D-LlS~vq  159 (202)
                      ..++|.+ +..+.+
T Consensus        62 ~~igg~~~~~~~~~   75 (82)
T cd03419          62 KFIGGCDDLMALHK   75 (82)
T ss_pred             EEEcCHHHHHHHHH
Confidence            5678888 877766

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes

>PF10096 DUF2334: Uncharacterized protein conserved in bacteria (DUF2334); InterPro: IPR018763 This group of proteins has no known function

Probab=83.47  E-value=4.3  Score=35.41  Aligned_cols=52  Identities=21%  Similarity=0.412  Sum_probs=43.7

Q ss_pred             CCCHHHHHHHHHHHHHhCCCeEEEEEccCCCchH-----------HHHHHHHHhhcCceEEEE
Q 028883           68 DLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKE-----------ALSYALSAKERGIKIIIV  119 (202)
Q Consensus        68 ~SD~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~-----------l~~~~~~~~~~g~~ViIa  119 (202)
                      .+|++.+++.++.|.+.|||+-+.|+.-|..|..           +.++++.++.+|..|+.=
T Consensus        12 ~~~~~~l~~i~d~l~~~~ipf~v~vIP~~~d~~~~~~~~l~~~~~f~~~L~~~~~~Gg~I~lH   74 (243)
T PF10096_consen   12 FSDLEKLKEIADYLYKYGIPFSVAVIPVYVDPNGGITVNLSDNPEFVEYLRYLQARGGEIVLH   74 (243)
T ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEEEecccCCCCcccccchhhHHHHHHHHHHHhcCCEEEEE
Confidence            6999999999999999999999999999887766           344566777888777653

>cd06293 PBP1_LacI_like_11 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors

Probab=83.36  E-value=24  Score=29.09  Aligned_cols=78  Identities=10%  Similarity=0.159  Sum_probs=49.6

Q ss_pred             EEEEecCCCC---HHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCC--cCchhhhhhhcc
Q 028883           61 VGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGV--EAHLSGVAAANS  135 (202)
Q Consensus        61 V~IimGS~SD---~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~--aa~LpgvvA~~T  135 (202)
                      |+++..+.++   ....+.+.+.++++|+  ++.+..-...++...++++.+..++++-||...-.  ...+.-...  .
T Consensus         2 Ig~i~~~~~~~~~~~~~~gi~~~~~~~gy--~v~~~~~~~~~~~~~~~i~~~~~~~~dgiii~~~~~~~~~~~~~~~--~   77 (269)
T cd06293           2 IGLVVPDIANPFFAELADAVEEEADARGL--SLVLCATRNRPERELTYLRWLDTNHVDGLIFVTNRPDDGALAKLIN--S   77 (269)
T ss_pred             EEEEeCCCCCCcHHHHHHHHHHHHHHCCC--EEEEEeCCCCHHHHHHHHHHHHHCCCCEEEEeCCCCCHHHHHHHHh--c
Confidence            6777765443   3566777888888985  44555444578888888888888889877665321  122323332  3


Q ss_pred             CCcEEEe
Q 028883          136 QILVIRV  142 (202)
Q Consensus       136 ~~PVIgV  142 (202)
                      ..|||-+
T Consensus        78 ~~pvV~i   84 (269)
T cd06293          78 YGNIVLV   84 (269)
T ss_pred             CCCEEEE
Confidence            4677765

This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.

>cd06308 PBP1_sensor_kinase_like Periplasmic binding domain of two-component sensor kinase signaling systems

Probab=83.15  E-value=14  Score=30.51  Aligned_cols=81  Identities=19%  Similarity=0.282  Sum_probs=53.4

Q ss_pred             eEEEEecCCCCH---HHHHHHHHHHHHh-CCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhh--
Q 028883           60 IVGIIMESDLDL---PVMNDAARTLSDF-GVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAA--  133 (202)
Q Consensus        60 ~V~IimGS~SD~---~v~~~a~~~L~~~-gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~--  133 (202)
                      +|+++..+-+|.   ...+.+.+.+++. |+  ++.+......++...++++++..++++.||....-...+...+..  
T Consensus         1 ~ig~~~~~~~~~~~~~~~~~i~~~~~~~~g~--~~~~~~~~~~~~~~~~~i~~~~~~~vdgiii~~~~~~~~~~~~~~~~   78 (270)
T cd06308           1 VIGFSQCNLADPWRAAMNDEIQREASNYPDV--ELIIADAADDNSKQVADIENFIRQGVDLLIISPNEAAPLTPVVEEAY   78 (270)
T ss_pred             CEEEEeeCCCCHHHHHHHHHHHHHHHhcCCc--EEEEEcCCCCHHHHHHHHHHHHHhCCCEEEEecCchhhchHHHHHHH
Confidence            478888877772   3455566666665 54  555666677888888888888888899887765443333333322  


Q ss_pred             ccCCcEEEe
Q 028883          134 NSQILVIRV  142 (202)
Q Consensus       134 ~T~~PVIgV  142 (202)
                      ....||+.+
T Consensus        79 ~~~ipvV~~   87 (270)
T cd06308          79 RAGIPVILL   87 (270)
T ss_pred             HCCCCEEEe
Confidence            346788876

Periplasmic binding domain of two-component sensor kinase signaling systems, some of which are fused with a C-terminal histidine kinase A domain (HisK) and/or a signal receiver domain (REC). Members of this group share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily and are predicted to be involved in sensing of environmental stimuli; their substrate specificities, however, are not known in detail.

>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain

Probab=83.11  E-value=8  Score=36.61  Aligned_cols=160  Identities=16%  Similarity=0.151  Sum_probs=93.9

Q ss_pred             cCceeEecCChhhhhhccccCcCCCCCCccccccCCCCCCCCCCeEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEcc
Q 028883           16 RGTIPVLASSNGSATSRRKDDSSVREPSTVFEEENPNGDSTDAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPP   95 (202)
Q Consensus        16 ~ghi~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~IimGS~SD~~v~~~a~~~L~~~gi~~ev~V~Sa   95 (202)
                      .|+|-+++.|-.-+...+.|..             ....   .-.-.|=+|...|...    .+.|++|.=.-+.+++-.
T Consensus       150 ~G~valvsqSG~~~~~~~~~~~-------------~~g~---g~s~~vs~Gn~~d~~~----~d~l~~l~~D~~t~~I~l  209 (447)
T TIGR02717       150 KGGIAFISQSGALLTALLDWAE-------------KNGV---GFSYFVSLGNKADIDE----SDLLEYLADDPDTKVILL  209 (447)
T ss_pred             CCCEEEEechHHHHHHHHHHHH-------------hcCC---CcceEEECCchhhCCH----HHHHHHHhhCCCCCEEEE
Confidence            6999999999666655555543             1110   1235677888888654    466777665555555554


Q ss_pred             C----CCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhhccCCcEE------------EecCCCCCCCh-hh---HH
Q 028883           96 H----QNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQILVI------------RVPLLSEDWSE-DD---VI  155 (202)
Q Consensus        96 H----Rtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~~T~~PVI------------gVP~~~~~l~G-~D---Ll  155 (202)
                      |    |.+.++.+.++.+.. +-.||+.-+|++.+=.-...++|--..=            |+..-. +++- +|   +|
T Consensus       210 y~E~~~~~~~f~~aa~~a~~-~KPVv~~k~Grs~~g~~aa~sHtgalag~~~~~~a~~~~~Gv~~~~-~~~el~~~~~~l  287 (447)
T TIGR02717       210 YLEGIKDGRKFLKTAREISK-KKPIVVLKSGTSEAGAKAASSHTGALAGSDEAYDAAFKQAGVIRAD-SIEELFDLARLL  287 (447)
T ss_pred             EecCCCCHHHHHHHHHHHcC-CCCEEEEecCCChhhhhhhhhccccccChHHHHHHHHHHCCeEEeC-CHHHHHHHHHHH
Confidence            4    778888888877743 6689999999986433334455533220            111111 1111 22   33


Q ss_pred             HhhcCCCCCeeeEEecCChhhHHHHHHHHHcc-------CCHHHHHHHHHH
Q 028883          156 NSIRMPSHVQVASVPRNNAKNAALYAVKVLGI-------ADEDLLERIRKY  199 (202)
Q Consensus       156 S~vqMP~GvpVatV~I~n~~NAAl~Aa~IL~~-------~d~~l~~kl~~~  199 (202)
                      +....|+|=.+++|  .|+-+.+.+++-.+..       ..++.+++|+++
T Consensus       288 ~~~~~~~g~rvaiv--s~sGG~g~l~aD~~~~~Gl~lp~ls~~t~~~L~~~  336 (447)
T TIGR02717       288 SNQPLPKGNRVAII--TNAGGPGVIATDACEENGLELAELSEATKNKLRNI  336 (447)
T ss_pred             hcCCCCCCCeEEEE--ECCchHHHHHHHHHHHcCCCcCCCCHHHHHHHHHh
Confidence            33334677778888  5666666666655433       345667777764

Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.

>PRK11175 universal stress protein UspE; Provisional

Probab=82.96  E-value=9  Score=32.93  Aligned_cols=68  Identities=18%  Similarity=0.216  Sum_probs=43.1

Q ss_pred             HHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhh--------hhhccCCcEEEecCC
Q 028883           75 NDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGV--------AAANSQILVIRVPLL  145 (202)
Q Consensus        75 ~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~Lpgv--------vA~~T~~PVIgVP~~  145 (202)
                      +++...++..|++++..+.--++..+.+.++   +++.+++.||.++-+...+.+.        +.-+++.||+-||..
T Consensus        72 ~~~~~~~~~~~~~~~~~v~~~g~~~~~i~~~---a~~~~~DLiV~G~~~~~~~~~~~~gs~~~~l~~~~~~pvlvv~~~  147 (305)
T PRK11175         72 REQAKPYLDAGIPIEIKVVWHNRPFEAIIQE---VIAGGHDLVVKMTHQHDKLESVIFTPTDWHLLRKCPCPVLMVKDQ  147 (305)
T ss_pred             HHHHHHHhhcCCceEEEEecCCCcHHHHHHH---HHhcCCCEEEEeCCCCcHHHhhccChhHHHHHhcCCCCEEEeccc
Confidence            3333444456777777665323333334444   4567899999988666666654        446789999999974

>cd06301 PBP1_rhizopine_binding_like Periplasmic binding proteins specific to rhizopines

Probab=82.81  E-value=17  Score=29.98  Aligned_cols=80  Identities=19%  Similarity=0.167  Sum_probs=53.3

Q ss_pred             eEEEEecCCCCHHHHH----HHHHHHHH-hCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhh-
Q 028883           60 IVGIIMESDLDLPVMN----DAARTLSD-FGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAA-  133 (202)
Q Consensus        60 ~V~IimGS~SD~~v~~----~a~~~L~~-~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~-  133 (202)
                      +|++|.-+.+| +...    .+.+.+++ .|  |++.+...-..++...+.++++.+++.+.||.........+-.+.- 
T Consensus         1 ~igvi~~~~~~-~~~~~~~~gi~~~~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~~~~l   77 (272)
T cd06301           1 KIGVSMANFDD-NFLTLLRNAMKEHAKVLGG--VELQFEDAKNDVATQLSQVENFIAQGVDAIIVVPVDTAATAPIVKAA   77 (272)
T ss_pred             CeeEeecccCC-HHHHHHHHHHHHHHHHcCC--cEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEecCchhhhHHHHHHH
Confidence            47788766555 4444    45555666 55  5666666667888888888888788888777765554445555554 


Q ss_pred             -ccCCcEEEe
Q 028883          134 -NSQILVIRV  142 (202)
Q Consensus       134 -~T~~PVIgV  142 (202)
                       ....|||.+
T Consensus        78 ~~~~iPvv~~   87 (272)
T cd06301          78 NAAGIPLVYV   87 (272)
T ss_pred             HHCCCeEEEe
Confidence             456799876

Periplasmic binding proteins specific to rhizopines, which are simple sugar-like compounds produced in the nodules induced by the symbiotic root nodule bacteria, such as Rhizobium and Sinorhizobium. Rhizopine-binding-like proteins from other bacteria are also included. Two inositol based rhizopine compounds are known to date: L-3-O-methly-scyllo-inosamine (3-O-MSI) and scyllo-inosamine. Bacterial strains that can metabolize rhizopine have a greater competitive advantage in nodulation and rhizopine synthesis is regulated by NifA/NtrA regulatory transcription activators which are maximally expressed at the onset of nitrogen fixation in bacteroids. The members of this group belong to the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily.

>PRK09492 treR trehalose repressor; Provisional

Probab=82.79  E-value=29  Score=29.56  Aligned_cols=61  Identities=15%  Similarity=0.105  Sum_probs=43.8

Q ss_pred             CCeEEEEecCCCC---HHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEe
Q 028883           58 APIVGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVG  120 (202)
Q Consensus        58 ~~~V~IimGS~SD---~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~  120 (202)
                      ...|+++....++   ...++.+.+.+++.|.  ++-+......+++..++++.+..++++-+|..
T Consensus        62 ~~~Ig~i~~~~~~~~~~~~~~~i~~~~~~~gy--~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~  125 (315)
T PRK09492         62 DKVVGIIVSRLDSLSENQAVRTMLPAFYEQGY--DPIIMESQFSPEKVNEHLGVLKRRNVDGVILF  125 (315)
T ss_pred             CCeEEEEecCCcCcccHHHHHHHHHHHHHcCC--eEEEEecCCChHHHHHHHHHHHhcCCCEEEEe
Confidence            3579999864333   3456777788888885  56666667788888888888877778866654

>cd01540 PBP1_arabinose_binding Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily

Probab=82.33  E-value=12  Score=31.18  Aligned_cols=80  Identities=14%  Similarity=0.108  Sum_probs=50.9

Q ss_pred             eEEEEecCCCC---HHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhh--c
Q 028883           60 IVGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAA--N  134 (202)
Q Consensus        60 ~V~IimGS~SD---~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~--~  134 (202)
                      +|++|..+.+|   ....+.+.+.++++|+  ++.+.... .+++..+.++++..++++.||..+......+-.+-.  .
T Consensus         1 ~Ig~v~~~~~~~~~~~~~~gi~~~~~~~g~--~~~~~~~~-~~~~~~~~i~~~~~~~~dgiii~~~~~~~~~~~~~~~~~   77 (289)
T cd01540           1 KIGFIVKQPEEPWFQTEWKFAKKAAKEKGF--TVVKIDVP-DGEKVLSAIDNLGAQGAKGFVICVPDVKLGPAIVAKAKA   77 (289)
T ss_pred             CeeeecCCCCCcHHHHHHHHHHHHHHHcCC--EEEEccCC-CHHHHHHHHHHHHHcCCCEEEEccCchhhhHHHHHHHHh
Confidence            47777766555   2234456777888885  55566665 677777788888788888777765433233433332  3


Q ss_pred             cCCcEEEe
Q 028883          135 SQILVIRV  142 (202)
Q Consensus       135 T~~PVIgV  142 (202)
                      ...|||.+
T Consensus        78 ~~iPvV~~   85 (289)
T cd01540          78 YNMKVVAV   85 (289)
T ss_pred             CCCeEEEe
Confidence            56799876

Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. ABP is only involved in transport contrary to other related sugar-binding proteins such as the glucose/galactose-binding protein (GGBP) and the ribose-binding protein (RBP), both of which are involved in chemotaxis as well as transport. The periplasmic ABP consists of two alpha/beta globular domains connected by a three-stranded hinge, a Venus flytrap-like domain, which undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, ABP is homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR) and DNA-binding transcriptional repressors such a

>PRK10703 DNA-binding transcriptional repressor PurR; Provisional

Probab=82.23  E-value=23  Score=30.61  Aligned_cols=80  Identities=11%  Similarity=0.185  Sum_probs=53.1

Q ss_pred             CeEEEEecCCCC---HHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhh--
Q 028883           59 PIVGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAA--  133 (202)
Q Consensus        59 ~~V~IimGS~SD---~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~--  133 (202)
                      ..|+++..+.+|   ..+.+.+.+.++++|  |++.+...+..+++..++++.+..++.+.||...+...  +..+.-  
T Consensus        60 ~~i~vi~~~~~~~~~~~~~~gi~~~~~~~g--~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~--~~~~~~l~  135 (341)
T PRK10703         60 KSIGLLATSSEAPYFAEIIEAVEKNCYQKG--YTLILCNAWNNLEKQRAYLSMLAQKRVDGLLVMCSEYP--EPLLAMLE  135 (341)
T ss_pred             CeEEEEeCCCCCchHHHHHHHHHHHHHHCC--CEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecCCCC--HHHHHHHH
Confidence            578988865444   233456667777888  56777778888998888888888888887776654311  122222  


Q ss_pred             c-cCCcEEEe
Q 028883          134 N-SQILVIRV  142 (202)
Q Consensus       134 ~-T~~PVIgV  142 (202)
                      . ...|||-+
T Consensus       136 ~~~~iPvV~~  145 (341)
T PRK10703        136 EYRHIPMVVM  145 (341)
T ss_pred             hcCCCCEEEE
Confidence            1 46788765

>PRK13059 putative lipid kinase; Reviewed

Probab=82.03  E-value=6.6  Score=34.68  Aligned_cols=76  Identities=12%  Similarity=0.109  Sum_probs=48.4

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhhcc----CCcEEE
Q 028883           66 ESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANS----QILVIR  141 (202)
Q Consensus        66 GS~SD~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~~T----~~PVIg  141 (202)
                      |+..+....+++.+.|++-|+.+++....-+...    +.+.++...+.++|| ++|+.+.+--|+.++.    ..|+--
T Consensus        13 G~g~~~~~~~~i~~~l~~~g~~~~~~~~~~~~~~----~~~~~~~~~~~d~vi-~~GGDGTv~evv~gl~~~~~~~~lgv   87 (295)
T PRK13059         13 GENAIISELDKVIRIHQEKGYLVVPYRISLEYDL----KNAFKDIDESYKYIL-IAGGDGTVDNVVNAMKKLNIDLPIGI   87 (295)
T ss_pred             cchhHHHHHHHHHHHHHHCCcEEEEEEccCcchH----HHHHHHhhcCCCEEE-EECCccHHHHHHHHHHhcCCCCcEEE
Confidence            5555566778888999999987765444433222    233444455677554 7899999998887774    345444


Q ss_pred             ecCCC
Q 028883          142 VPLLS  146 (202)
Q Consensus       142 VP~~~  146 (202)
                      +|.-+
T Consensus        88 iP~GT   92 (295)
T PRK13059         88 LPVGT   92 (295)
T ss_pred             ECCCC
Confidence            56543

>cd06302 PBP1_LsrB_Quorum_Sensing Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs

Probab=81.88  E-value=14  Score=31.63  Aligned_cols=81  Identities=14%  Similarity=0.145  Sum_probs=52.4

Q ss_pred             eEEEEecCCCC---HHHHHHHHHHHHHhCCCeEEEEE-ccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhh--h
Q 028883           60 IVGIIMESDLD---LPVMNDAARTLSDFGVPYEIKIL-PPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAA--A  133 (202)
Q Consensus        60 ~V~IimGS~SD---~~v~~~a~~~L~~~gi~~ev~V~-SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA--~  133 (202)
                      +|+++..+.+|   ..+.+.+.+.++++|+  ++.+. .....++...++++++.+++.+-||..+.....+...+.  -
T Consensus         1 ~I~vi~~~~~~~f~~~i~~gi~~~a~~~g~--~v~~~~~~~~d~~~~~~~i~~~~~~~~DgiIi~~~~~~~~~~~~~~~~   78 (298)
T cd06302           1 TIAFVPKVTGIPYFNRMEEGAKEAAKELGV--DAIYVGPTTADAAGQVQIIEDLIAQGVDAIAVVPNDPDALEPVLKKAR   78 (298)
T ss_pred             CEEEEEcCCCChHHHHHHHHHHHHHHHhCC--eEEEECCCCCCHHHHHHHHHHHHhcCCCEEEEecCCHHHHHHHHHHHH
Confidence            36777776666   2344566777788885  55554 455788888889888878788877776543332233322  2


Q ss_pred             ccCCcEEEe
Q 028883          134 NSQILVIRV  142 (202)
Q Consensus       134 ~T~~PVIgV  142 (202)
                      ....|||-+
T Consensus        79 ~~~iPvV~v   87 (298)
T cd06302          79 EAGIKVVTH   87 (298)
T ss_pred             HCCCeEEEE
Confidence            346788865

Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs from other bacteria. The members of this group are homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transporters of many sugar based solutes in bacteria and archaea and that are a member of the type I periplasmic binding protein superfamily. LsrB binds a chemically distinct form of the AI-2 signal that lacks boron, in contrast to the Vibrio harveyi AI-2 signaling molecule that has an unusual furanosyl borate diester. Hence, many bacteria coordinate their gene expression according to the local density of their population by producing species specific AI-2. This process of quorum sensing allows LsrB to function as a periplasmic AI-2 binding p

>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors

Probab=81.86  E-value=28  Score=28.75  Aligned_cols=79  Identities=18%  Similarity=0.256  Sum_probs=50.9

Q ss_pred             EEEEecC---CCCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhh--hcc
Q 028883           61 VGIIMES---DLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAA--ANS  135 (202)
Q Consensus        61 V~IimGS---~SD~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA--~~T  135 (202)
                      |+||...   .......+.+.+.++++|+.  +-+......+++..+.++.+...+++-+|...+.... +..+.  ..-
T Consensus         2 Igvv~~~~~~~~~~~~~~~i~~~a~~~g~~--~~~~~~~~~~~~~~~~i~~l~~~~vdgii~~~~~~~~-~~~~~~~~~~   78 (269)
T cd06281           2 IGCLVSDITNPLLAQLFSGAEDRLRAAGYS--LLIANSLNDPERELEILRSFEQRRMDGIIIAPGDERD-PELVDALASL   78 (269)
T ss_pred             EEEEecCCccccHHHHHHHHHHHHHHcCCE--EEEEeCCCChHHHHHHHHHHHHcCCCEEEEecCCCCc-HHHHHHHHhC
Confidence            5666644   33455666777888888864  5555566788888888888888888877776543222 33322  223


Q ss_pred             CCcEEEe
Q 028883          136 QILVIRV  142 (202)
Q Consensus       136 ~~PVIgV  142 (202)
                      ..|||-+
T Consensus        79 ~ipvV~i   85 (269)
T cd06281          79 DLPIVLL   85 (269)
T ss_pred             CCCEEEE
Confidence            5788766

This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.

>TIGR02190 GlrX-dom Glutaredoxin-family domain

Probab=81.60  E-value=10  Score=26.86  Aligned_cols=72  Identities=14%  Similarity=0.137  Sum_probs=45.1

Q ss_pred             CCCeEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhhccC
Q 028883           57 DAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQ  136 (202)
Q Consensus        57 ~~~~V~IimGS~SD~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~~T~  136 (202)
                      ++..|-|.+.  +.=+.+.++.+.|+++|++|+..-+.  ..++ ..++.                       ...+...
T Consensus         6 ~~~~V~ly~~--~~Cp~C~~ak~~L~~~gi~y~~idi~--~~~~-~~~~~-----------------------~~~g~~~   57 (79)
T TIGR02190         6 KPESVVVFTK--PGCPFCAKAKATLKEKGYDFEEIPLG--NDAR-GRSLR-----------------------AVTGATT   57 (79)
T ss_pred             CCCCEEEEEC--CCCHhHHHHHHHHHHcCCCcEEEECC--CChH-HHHHH-----------------------HHHCCCC
Confidence            3345666554  66799999999999999999875443  2222 12221                       1235577


Q ss_pred             CcEEEecCCCCCCChhh-HHHhh
Q 028883          137 ILVIRVPLLSEDWSEDD-VINSI  158 (202)
Q Consensus       137 ~PVIgVP~~~~~l~G~D-LlS~v  158 (202)
                      .|+|-+  .+..++|.| |...|
T Consensus        58 vP~i~i--~g~~igG~~~l~~~l   78 (79)
T TIGR02190        58 VPQVFI--GGKLIGGSDELEAYL   78 (79)
T ss_pred             cCeEEE--CCEEEcCHHHHHHHh
Confidence            888853  444567777 66544

This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.

>cd01536 PBP1_ABC_sugar_binding_like Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily

Probab=81.36  E-value=19  Score=29.00  Aligned_cols=81  Identities=19%  Similarity=0.269  Sum_probs=50.7

Q ss_pred             eEEEEecCCCC---HHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhh--c
Q 028883           60 IVGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAA--N  134 (202)
Q Consensus        60 ~V~IimGS~SD---~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~--~  134 (202)
                      +|++|....++   ....+.+.+.+++.|+  ++.+......+++..++++++..++++.+|........+..++.-  .
T Consensus         1 ~ig~i~p~~~~~~~~~~~~~~~~~a~~~g~--~~~~~~~~~~~~~~~~~~~~l~~~~vdgvi~~~~~~~~~~~~~~~l~~   78 (267)
T cd01536           1 KIGLVVPSLNNPFWQAMNKGAEAAAKELGV--ELIVLDAQNDVSKQIQQIEDLIAQGVDGIIISPVDSAALTPALKKANA   78 (267)
T ss_pred             CEEEEeccccCHHHHHHHHHHHHHHHhcCc--eEEEECCCCCHHHHHHHHHHHHHcCCCEEEEeCCCchhHHHHHHHHHH
Confidence            36777754333   2345555666777775  555566666888888888888777888888765443333223322  2


Q ss_pred             cCCcEEEe
Q 028883          135 SQILVIRV  142 (202)
Q Consensus       135 T~~PVIgV  142 (202)
                      ...|+|.+
T Consensus        79 ~~ip~V~~   86 (267)
T cd01536          79 AGIPVVTV   86 (267)
T ss_pred             CCCcEEEe
Confidence            45788875

Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. The members of this family function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea. The sugar binding domain is also homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR. Moreover, this periplasmic binding domain, also known as Venus flytrap domain, undergoes transition from an open to a closed conformational state upon the binding of ligands such as lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. This family also includes the periplasmic binding domain of autoinducer-2 (AI-2

>PRK11303 DNA-binding transcriptional regulator FruR; Provisional

Probab=81.36  E-value=32  Score=29.48  Aligned_cols=83  Identities=13%  Similarity=0.178  Sum_probs=50.6

Q ss_pred             CCCeEEEEecCCCCH---HHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhh-
Q 028883           57 DAPIVGIIMESDLDL---PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAA-  132 (202)
Q Consensus        57 ~~~~V~IimGS~SD~---~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA-  132 (202)
                      +...|++++...++.   .+.+.+.+.+++.|+  ++.+...+..++...++++.+...+++-||........- ..+. 
T Consensus        60 ~~~~Igvv~~~~~~~~~~~l~~gi~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~-~~~~~  136 (328)
T PRK11303         60 RTRSIGLIIPDLENTSYARIAKYLERQARQRGY--QLLIACSDDQPDNEMRCAEHLLQRQVDALIVSTSLPPEH-PFYQR  136 (328)
T ss_pred             CCceEEEEeCCCCCchHHHHHHHHHHHHHHcCC--EEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCh-HHHHH
Confidence            346899998654442   233455666677775  555566677788777888888777888777654322111 1222 


Q ss_pred             -hccCCcEEEe
Q 028883          133 -ANSQILVIRV  142 (202)
Q Consensus       133 -~~T~~PVIgV  142 (202)
                       .....||+-+
T Consensus       137 l~~~~iPvV~v  147 (328)
T PRK11303        137 LQNDGLPIIAL  147 (328)
T ss_pred             HHhcCCCEEEE
Confidence             2245788765

>PRK10076 pyruvate formate lyase II activase; Provisional

Probab=81.23  E-value=3.2  Score=35.73  Aligned_cols=59  Identities=24%  Similarity=0.383  Sum_probs=46.5

Q ss_pred             CeEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEccCC---------------------CchHHHHHHHHHhhcCceEE
Q 028883           59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQ---------------------NCKEALSYALSAKERGIKII  117 (202)
Q Consensus        59 ~~V~IimGS~SD~~v~~~a~~~L~~~gi~~ev~V~SaHR---------------------tp~~l~~~~~~~~~~g~~Vi  117 (202)
                      -++-+|-|-..|.+..++.++.+..+++. .+.+...|+                     +++.+.++.+-+++.|.+++
T Consensus       132 iR~~vIPg~nd~~e~i~~ia~~l~~l~~~-~~~llpyh~~g~~Ky~~lg~~y~~~~~~~~~~~~l~~~~~~~~~~gl~~~  210 (213)
T PRK10076        132 PRLPLIPGFTLSRENMQQALDVLIPLGIK-QIHLLPFHQYGEPKYRLLGKTWSMKEVPAPSSADVATMREMAERAGFQVT  210 (213)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHcCCc-eEEEecCCccchhHHHHcCCcCccCCCCCcCHHHHHHHHHHHHHcCCeEE
Confidence            36788888888889999999999999876 788888887                     33455566666777788887


Q ss_pred             E
Q 028883          118 I  118 (202)
Q Consensus       118 I  118 (202)
                      |
T Consensus       211 i  211 (213)
T PRK10076        211 V  211 (213)
T ss_pred             e
Confidence            6

>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins

Probab=81.20  E-value=35  Score=30.99  Aligned_cols=74  Identities=20%  Similarity=0.251  Sum_probs=52.6

Q ss_pred             CCCeEEEEecCCC-----CHH----HHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceE-EEEecCCcCc
Q 028883           57 DAPIVGIIMESDL-----DLP----VMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKI-IIVGDGVEAH  126 (202)
Q Consensus        57 ~~~~V~IimGS~S-----D~~----v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~V-iIa~AG~aa~  126 (202)
                      ..++++|+.|++|     |..    .+++....++..|  ..+.|+.-.|||+++.+.+++.-+....+ |.-..| .|=
T Consensus       145 ~~p~~avLIGG~s~~~~~~~~~~~~l~~~l~~~~~~~~--~~~~vttSRRTp~~~~~~L~~~~~~~~~~~~~~~~~-~nP  221 (311)
T PF06258_consen  145 PRPRVAVLIGGDSKHYRWDEEDAERLLDQLAALAAAYG--GSLLVTTSRRTPPEAEAALRELLKDNPGVYIWDGTG-ENP  221 (311)
T ss_pred             CCCeEEEEECcCCCCcccCHHHHHHHHHHHHHHHHhCC--CeEEEEcCCCCcHHHHHHHHHhhcCCCceEEecCCC-CCc
Confidence            4589999999988     333    4456666666777  47999999999999999988876544455 443333 666


Q ss_pred             hhhhhhh
Q 028883          127 LSGVAAA  133 (202)
Q Consensus       127 LpgvvA~  133 (202)
                      ..++++.
T Consensus       222 y~~~La~  228 (311)
T PF06258_consen  222 YLGFLAA  228 (311)
T ss_pred             HHHHHHh
Confidence            6676643

The function of this family is unknown.

>PRK14569 D-alanyl-alanine synthetase A; Provisional

Probab=80.94  E-value=3.8  Score=36.16  Aligned_cols=82  Identities=11%  Similarity=0.014  Sum_probs=50.9

Q ss_pred             CCeEEEEecCCCC-----HHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCce-EEEEecCC---cCchh
Q 028883           58 APIVGIIMESDLD-----LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIK-IIIVGDGV---EAHLS  128 (202)
Q Consensus        58 ~~~V~IimGS~SD-----~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~-ViIa~AG~---aa~Lp  128 (202)
                      +.+|+|++|+.|-     +.-++.+.+.|++.|....  .+-.+. .+    +.........+ ||++.-|.   .+.++
T Consensus         3 ~~~i~vl~gg~s~e~~vsl~s~~~v~~aL~~~g~~~~--~~~~~~-~~----~~~~l~~~~~d~vf~~lhG~~ge~~~i~   75 (296)
T PRK14569          3 NEKIVVLYGGDSPEREVSLKSGKAVLDSLISQGYDAV--GVDASG-KE----LVAKLLELKPDKCFVALHGEDGENGRVS   75 (296)
T ss_pred             CcEEEEEeCCCCCchHhHHHHHHHHHHHHHHcCCEEE--EEcCCc-hh----HHHHhhccCCCEEEEeCCCCCCCChHHH
Confidence            3589999999998     4567788888888887643  233332 11    12222233454 66766544   45577


Q ss_pred             hhhhhccCCcEEEecCCCC
Q 028883          129 GVAAANSQILVIRVPLLSE  147 (202)
Q Consensus       129 gvvA~~T~~PVIgVP~~~~  147 (202)
                      +++..+ .+|++|+.+.+.
T Consensus        76 ~~le~~-gip~~Gs~~~a~   93 (296)
T PRK14569         76 ALLEML-EIKHTSSSMKSS   93 (296)
T ss_pred             HHHHHc-CCCeeCCCHHHH
Confidence            766444 688888776543

>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]

Probab=80.82  E-value=11  Score=34.03  Aligned_cols=76  Identities=14%  Similarity=0.194  Sum_probs=58.6

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhhc--cCCcEEE-e
Q 028883           66 ESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAAN--SQILVIR-V  142 (202)
Q Consensus        66 GS~SD~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~~--T~~PVIg-V  142 (202)
                      |-..-....+++.+.|++.|..+++++....   ....++++++...+++.||+ +|+.+-+.-|+.++  +..|.+| +
T Consensus        14 G~~~~~~~~~~~~~~l~~~g~~~~~~~t~~~---g~a~~~a~~a~~~~~D~via-~GGDGTv~evingl~~~~~~~Lgil   89 (301)
T COG1597          14 GKGKAKKLLREVEELLEEAGHELSVRVTEEA---GDAIEIAREAAVEGYDTVIA-AGGDGTVNEVANGLAGTDDPPLGIL   89 (301)
T ss_pred             cccchhhHHHHHHHHHHhcCCeEEEEEeecC---ccHHHHHHHHHhcCCCEEEE-ecCcchHHHHHHHHhcCCCCceEEe
Confidence            3344566788999999999999999888765   77888999988888888776 58899999898887  5555344 4


Q ss_pred             cCC
Q 028883          143 PLL  145 (202)
Q Consensus       143 P~~  145 (202)
                      |.-
T Consensus        90 P~G   92 (301)
T COG1597          90 PGG   92 (301)
T ss_pred             cCC
Confidence            443

>TIGR02955 TMAO_TorT TMAO reductase system periplasmic protein TorT

Probab=80.75  E-value=17  Score=31.01  Aligned_cols=81  Identities=21%  Similarity=0.234  Sum_probs=48.4

Q ss_pred             eEEEEecCCCC---HHHHHHHHHHHHHhCCCeEEEEEcc--CCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhh-h
Q 028883           60 IVGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPP--HQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAA-A  133 (202)
Q Consensus        60 ~V~IimGS~SD---~~v~~~a~~~L~~~gi~~ev~V~Sa--HRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA-~  133 (202)
                      +++++.-..+|   ....+.+.+.+++.|+  ++.+.+.  +..+++..++++.+..++++.||..+.....+...+. .
T Consensus         1 ~igvvvp~~~n~f~~~~~~gi~~~a~~~g~--~v~~~~~~~~~~~~~~~~~i~~l~~~~vDgiIi~~~~~~~~~~~l~~~   78 (295)
T TIGR02955         1 KLCALYPHLKDSYWLSINYGMVEQAKHLGV--ELKVLEAGGYPNLDKQLAQIEQCKSWGADAILLGTVSPEALNHDLAQL   78 (295)
T ss_pred             CeeEEecCCCcHHHHHHHHHHHHHHHHhCC--EEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEecCChhhhhHHHHHH
Confidence            36677765555   2333455666777876  4444544  3467777788888888889877776543333223332 2


Q ss_pred             ccCCcEEEe
Q 028883          134 NSQILVIRV  142 (202)
Q Consensus       134 ~T~~PVIgV  142 (202)
                      ....||+-+
T Consensus        79 ~~~iPvV~~   87 (295)
T TIGR02955        79 TKSIPVFAL   87 (295)
T ss_pred             hcCCCEEEE
Confidence            236788753

Members of this family are the periplasmic protein TorT which, together with the the TorS/TorR histidine kinase/response regulator system, regulates expression of the torCAD operon for trimethylamine N-oxide reductase (TMAO reductase). It appears to bind an inducer for TMAO reductase, and shows homology to a periplasmic D-ribose binding protein.

>PRK10727 DNA-binding transcriptional regulator GalR; Provisional

Probab=80.24  E-value=39  Score=29.37  Aligned_cols=64  Identities=11%  Similarity=0.040  Sum_probs=44.7

Q ss_pred             CCCeEEEEecCCCC---HHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecC
Q 028883           57 DAPIVGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDG  122 (202)
Q Consensus        57 ~~~~V~IimGS~SD---~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG  122 (202)
                      +...|+++..+-+|   ....+.+.+.+++.|.  .+-+...+..+++..++++.+..++++-+|....
T Consensus        58 ~~~~Igvi~~~~~~~f~~~~~~gi~~~~~~~g~--~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~  124 (343)
T PRK10727         58 STETVGLVVGDVSDPFFGAMVKAVEQVAYHTGN--FLLIGNGYHNEQKERQAIEQLIRHRCAALVVHAK  124 (343)
T ss_pred             CCCeEEEEeCCCCcchHHHHHHHHHHHHHHcCC--EEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEecC
Confidence            34679999876544   2345566677778885  5666667777887778888887788887776543

>PRK13057 putative lipid kinase; Reviewed

Probab=80.13  E-value=11  Score=33.03  Aligned_cols=70  Identities=16%  Similarity=0.177  Sum_probs=48.8

Q ss_pred             HHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhhc--cCCcEEEecCCC
Q 028883           72 PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAAN--SQILVIRVPLLS  146 (202)
Q Consensus        72 ~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~~--T~~PVIgVP~~~  146 (202)
                      ...+++.+.|++.|+.+++...   +.+....+++++. .++.+.|| ++|+.+.+--++.++  +..|+--+|.-+
T Consensus        13 ~~~~~i~~~l~~~g~~~~~~~t---~~~~~a~~~~~~~-~~~~d~ii-v~GGDGTv~~v~~~l~~~~~~lgiiP~GT   84 (287)
T PRK13057         13 AALAAARAALEAAGLELVEPPA---EDPDDLSEVIEAY-ADGVDLVI-VGGGDGTLNAAAPALVETGLPLGILPLGT   84 (287)
T ss_pred             hhHHHHHHHHHHcCCeEEEEec---CCHHHHHHHHHHH-HcCCCEEE-EECchHHHHHHHHHHhcCCCcEEEECCCC
Confidence            3567888999999998766544   4566667777653 45567554 679999999888775  455655566544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	202
1o4v_A	183	Crystal Structure Of The Catalytic Subunit Of A Pho		3e-26
3lp6_A	174	Crystal Structure Of Rv3275c-E60a From Mycobacteriu		4e-21
1xmp_A	170	Crystal Structure Of Pure (Ba0288) From Bacillus An		3e-18
4b4k_A	181	Crystal Structure Of Bacillus Anthracis Pure Length		4e-18
3oow_A	166	Octameric Structure Of The Phosphoribosylaminoimida		3e-16
3opq_A	163	Phosphoribosylaminoimidazole Carboxylase With Fruct		4e-16
4grd_A	173	Crystal Structure Of Phosphoribosylaminoimidazole C		1e-14
1u11_A	182	Pure (N5-Carboxyaminoimidazole Ribonucleotide Mutas		1e-13
2fw1_A	183	Structure Of Pure (n5-carboxyaminoimidazole Ribonuc		1e-13
2fwa_A	183	Structure Of Pure (n5-carboxyaminoimidazole Ribonuc		1e-12
2fw6_A	183	Structure Of Pure (N5-Carboxyaminoimidazole Ribonuc		1e-12
2fwb_A	183	Structure Of Pure (N5-Carboxyaminoimidazole Ribonuc		2e-12
2fw9_A	183	Structure Of Pure (n5-carboxyaminoimidazole Ribonuc		2e-12
2fwi_A	183	Structure Of Pure (n5-carboxyaminoimidazole Ribonuc		2e-12
2ywx_A	157	Crystal Structure Of Phosphoribosylaminoimidazole C		5e-12
3ors_A	163	Crystal Structure Of N5-Carboxyaminoimidazole Ribon		2e-10
2fw8_A	183	Structure Of Pure (N5-Carboxyaminoimidazole Ribonuc		5e-10
2nsh_A	169	E. Coli Pure H45q Mutant Complexed With Nitro-Air L		5e-10
2nsl_A	169	E. Coli Pure H45n Mutant Complexed With Cair Length		6e-10
2h31_A	425	Crystal Structure Of Human Paics, A Bifunctional Ca		1e-08
3rgg_A	159	Crystal Structure Of Treponema Denticola Pure Bound		2e-08
3rg8_A	159	Crystal Structure Of Treponema Denticola Pure Lengt		2e-08
2ate_A	169	Structure Of The Complex Of Pure With Nitroair Leng		2e-08
1qcz_A	169	Crystal Structure Of E. Coli Pure, An Unusual Mutas		2e-08
3kuu_A	174	Structure Of The Pure Phosphoribosylaminoimidazole		3e-08
1d7a_A	161	Crystal Structure Of E. Coli Pure-Mononucleotide Co		3e-08
3trh_A	169	Structure Of A Phosphoribosylaminoimidazole Carboxy		5e-06

>pdb|1O4V|A Chain A, Crystal Structure Of The Catalytic Subunit Of A Phosphoribosylaminoimidazole Mutase (Tm0446) From Thermotoga Maritima At 1.77 A Resolution Length = 183

Iteration: 1
 Score =  114 bits (286), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 64/144 (44%), Positives = 90/144 (62%), Gaps = 1/144 (0%)
Query: 59  PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIII 118
           P VGIIM SD DLPVM  AA  L +FG+ YEI I+  H+       YA +A+ERGI++II
Sbjct: 14  PRVGIIMGSDSDLPVMKQAAEILEEFGIDYEITIVSAHRTPDRMFEYAKNAEERGIEVII 73
Query: 119 VGDGVEAHLSGVAAANSQILVIRVPLLSEDWSEDDVINSI-RMPSHVQVASVPRNNAKNA 177
            G G  AHL G+ A+ + + VI VP+ +   +  D + SI +MP  V VA+V  NNAKNA
Sbjct: 74  AGAGGAAHLPGMVASITHLPVIGVPVKTSTLNGLDSLFSIVQMPGGVPVATVAINNAKNA 133
Query: 178 ALYAVKVLGIADEDLLERIRKYVE 201
            + A  +LGI   ++  ++++Y E
Sbjct: 134 GILAASILGIKYPEIARKVKEYKE 157

>pdb|3LP6|A Chain A, Crystal Structure Of Rv3275c-E60a From Mycobacterium Tubercu 1.7a Resolution Length = 174

Iteration: 1
 Score = 97.8 bits (242), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 59/142 (41%), Positives = 87/142 (61%), Gaps = 1/142 (0%)
Query: 59  PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIII 118
           P VG+IM SD D PVM DAA  L++F +P E++++  H+  +   SYA  A  RG+++II
Sbjct: 8   PRVGVIMGSDSDWPVMADAAAALAEFDIPAEVRVVSAHRTPEAMFSYARGAAARGLEVII 67
Query: 119 VGDGVEAHLSGVAAANSQILVIRVPL-LSEDWSEDDVINSIRMPSHVQVASVPRNNAKNA 177
            G G  AHL G+ AA + + VI VP+ L      D +++ ++MP+ V VA+V    A NA
Sbjct: 68  AGAGGAAHLPGMVAAATPLPVIGVPVPLGRLDGLDSLLSIVQMPAGVPVATVSIGGAGNA 127
Query: 178 ALYAVKVLGIADEDLLERIRKY 199
            L AV++LG A+  L  RI  +
Sbjct: 128 GLLAVRMLGAANPQLRARIVAF 149

>pdb|1XMP|A Chain A, Crystal Structure Of Pure (Ba0288) From Bacillus Anthracis At 1.8 Resolution Length = 170

Iteration: 1
 Score = 88.2 bits (217), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 54/149 (36%), Positives = 86/149 (57%), Gaps = 6/149 (4%)
Query: 60  IVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIV 119
           +VG+IM S  D   M  A   L +  +PYE K++  H+       YA +A+ERG+K+II 
Sbjct: 13  LVGVIMGSTSDWETMKYACDILDELNIPYEKKVVSAHRTPDYMFEYAETARERGLKVIIA 72
Query: 120 GDGVEAHLSGVAAANSQILVIRVPLLSEDWSE-DDVINSIRMPSHVQVASVP--RNNAKN 176
           G G  AHL G+ AA + + VI VP+ S+  +  D +++ ++MP  V VA+V   +  + N
Sbjct: 73  GAGGAAHLPGMVAAKTNLPVIGVPVQSKALNGLDSLLSIVQMPGGVPVATVAIGKAGSTN 132
Query: 177 AALYAVKVLGIADEDL---LERIRKYVEE 202
           A L A ++LG   +D+   LE  R+ +E+
Sbjct: 133 AGLLAAQILGSFHDDIHDALELRREAIEK 161

>pdb|4B4K|A Chain A, Crystal Structure Of Bacillus Anthracis Pure Length = 181

Iteration: 1
 Score = 87.8 bits (216), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 54/149 (36%), Positives = 86/149 (57%), Gaps = 6/149 (4%)
Query: 60  IVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIV 119
           +VG+IM S  D   M  A   L +  +PYE K++  H+       YA +A+ERG+K+II 
Sbjct: 24  LVGVIMGSTSDWETMKYACDILDELNIPYEKKVVSAHRTPDYMFEYAETARERGLKVIIA 83
Query: 120 GDGVEAHLSGVAAANSQILVIRVPLLSEDWSE-DDVINSIRMPSHVQVASVP--RNNAKN 176
           G G  AHL G+ AA + + VI VP+ S+  +  D +++ ++MP  V VA+V   +  + N
Sbjct: 84  GAGGAAHLPGMVAAKTNLPVIGVPVQSKALNGLDSLLSIVQMPGGVPVATVAIGKAGSTN 143
Query: 177 AALYAVKVLGIADEDL---LERIRKYVEE 202
           A L A ++LG   +D+   LE  R+ +E+
Sbjct: 144 AGLLAAQILGSFHDDIHDALELRREAIEK 172

>pdb|3OOW|A Chain A, Octameric Structure Of The Phosphoribosylaminoimidazole Carboxylase Catalytic Subunit From Francisella Tularensis Subsp. Tularensis Schu S4. Length = 166

Iteration: 1
 Score = 81.3 bits (199), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 46/145 (31%), Positives = 80/145 (55%), Gaps = 3/145 (2%)
Query: 61  VGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVG 120
           VG+I  S  D     +    L + G+ YE +++  H+   +   YA +AKERG+K+II G
Sbjct: 8   VGVIXGSKSDWSTXKECCDILDNLGIGYECEVVSAHRTPDKXFDYAETAKERGLKVIIAG 67
Query: 121 DGVEAHLSGVAAANSQILVIRVPLLSEDW-SEDDVINSIRMPSHVQVAS--VPRNNAKNA 177
            G  AHL G  AA + + V+ VP+ S     +D +++ ++ P+ + VA+  +    AKNA
Sbjct: 68  AGGAAHLPGXVAAKTTLPVLGVPVKSSTLNGQDSLLSIVQXPAGIPVATFAIGXAGAKNA 127
Query: 178 ALYAVKVLGIADEDLLERIRKYVEE 202
           AL+A  +L   D ++ + + ++  E
Sbjct: 128 ALFAASILQHTDINIAKALAEFRAE 152

>pdb|3OPQ|A Chain A, Phosphoribosylaminoimidazole Carboxylase With Fructose-6-Phosphate Bound To The Central Channel Of The Octameric Protein Structure. Length = 163

Iteration: 1
 Score = 81.3 bits (199), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 46/145 (31%), Positives = 80/145 (55%), Gaps = 3/145 (2%)
Query: 61  VGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVG 120
           VG+I  S  D     +    L + G+ YE +++  H+   +   YA +AKERG+K+II G
Sbjct: 5   VGVIXGSKSDWSTXKECCDILDNLGIGYECEVVSAHRTPDKXFDYAETAKERGLKVIIAG 64
Query: 121 DGVEAHLSGVAAANSQILVIRVPLLSEDW-SEDDVINSIRMPSHVQVAS--VPRNNAKNA 177
            G  AHL G  AA + + V+ VP+ S     +D +++ ++ P+ + VA+  +    AKNA
Sbjct: 65  AGGAAHLPGXVAAKTTLPVLGVPVKSSTLNGQDSLLSIVQXPAGIPVATFAIGXAGAKNA 124
Query: 178 ALYAVKVLGIADEDLLERIRKYVEE 202
           AL+A  +L   D ++ + + ++  E
Sbjct: 125 ALFAASILQHTDINIAKALAEFRAE 149

>pdb|4GRD|A Chain A, Crystal Structure Of Phosphoribosylaminoimidazole Carboxylase Catalytic Subunit From Burkholderia Cenocepacia J2315 Length = 173

Iteration: 1
 Score = 75.9 bits (185), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 49/121 (40%), Positives = 70/121 (57%), Gaps = 1/121 (0%)
Query: 49  ENPNGDSTDAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALS 108
           E     +  AP+VG++M S  D  VM  A   L +FGVPYE K++  H+   E   YA  
Sbjct: 3   EIQTAHTHSAPLVGVLMGSSSDWDVMKHAVAILQEFGVPYEAKVVSAHRMPDEMFDYAEK 62
Query: 109 AKERGIKIIIVGDGVEAHLSGVAAANSQILVIRVPLLSEDWSEDDVINSI-RMPSHVQVA 167
           A+ERG++ II G G  AHL G+ AA + + V+ VP+ S+     D ++SI +MP  V VA
Sbjct: 63  ARERGLRAIIAGAGGAAHLPGMLAAKTTVPVLGVPVASKYLKGVDSLHSIVQMPKGVPVA 122
Query: 168 S 168
           +
Sbjct: 123 T 123

>pdb|1U11|A Chain A, Pure (N5-Carboxyaminoimidazole Ribonucleotide Mutase) From The Acidophile Acetobacter Aceti Length = 182

Iteration: 1
 Score = 72.8 bits (177), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 44/125 (35%), Positives = 69/125 (55%), Gaps = 3/125 (2%)
Query: 55  STDAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGI 114
           +  AP+VGIIM S  D   M  A   L++  +P+E  I+  H+       YA +A ERG+
Sbjct: 18  AASAPVVGIIMGSQSDWETMRHADALLTELEIPHETLIVSAHRTPDRLADYARTAAERGL 77
Query: 115 KIIIVGDGVEAHLSGVAAANSQILVIRVPLLSEDW-SEDDVINSIRMPSHVQVAS--VPR 171
            +II G G  AHL G+ AA +++ V+ VP+ S      D +++ ++MP  V V +  +  
Sbjct: 78  NVIIAGAGGAAHLPGMCAAWTRLPVLGVPVESRALKGMDSLLSIVQMPGGVPVGTLAIGA 137
Query: 172 NNAKN 176
           + AKN
Sbjct: 138 SGAKN 142

>pdb|2FW1|A Chain A, Structure Of Pure (n5-carboxyaminoimidazole Ribonucleotide Mutase) From The Acidophilic Bacterium Acetobacter Aceti, At Ph 8.5 Length = 183

Iteration: 1
 Score = 72.4 bits (176), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 44/125 (35%), Positives = 69/125 (55%), Gaps = 3/125 (2%)
Query: 55  STDAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGI 114
           +  AP+VGIIM S  D   M  A   L++  +P+E  I+  H+       YA +A ERG+
Sbjct: 19  AASAPVVGIIMGSQSDWETMRHADALLTELEIPHETLIVSAHRTPDRLADYARTAAERGL 78
Query: 115 KIIIVGDGVEAHLSGVAAANSQILVIRVPLLSEDW-SEDDVINSIRMPSHVQVAS--VPR 171
            +II G G  AHL G+ AA +++ V+ VP+ S      D +++ ++MP  V V +  +  
Sbjct: 79  NVIIAGAGGAAHLPGMCAAWTRLPVLGVPVESRALKGMDSLLSIVQMPGGVPVGTLAIGA 138
Query: 172 NNAKN 176
           + AKN
Sbjct: 139 SGAKN 143

>pdb|2FWA|A Chain A, Structure Of Pure (n5-carboxyaminoimidazole Ribonucleotide Mutase) H89n From The Acidophilic Bacterium Acetobacter Aceti, At Ph 7 Length = 183

Iteration: 1
 Score = 69.3 bits (168), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 43/125 (34%), Positives = 69/125 (55%), Gaps = 3/125 (2%)
Query: 55  STDAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGI 114
           +  AP+VGIIM S  D   M  A   L++  +P+E  I+  H+       YA +A ERG+
Sbjct: 19  AASAPVVGIIMGSQSDWETMRHADALLTELEIPHETLIVSAHRTPDRLADYARTAAERGL 78
Query: 115 KIIIVGDGVEAHLSGVAAANSQILVIRVPLLSEDW-SEDDVINSIRMPSHVQVAS--VPR 171
            +II G G  A+L G+ AA +++ V+ VP+ S      D +++ ++MP  V V +  +  
Sbjct: 79  NVIIAGAGGAANLPGMCAAWTRLPVLGVPVESRALKGMDSLLSIVQMPGGVPVGTLAIGA 138
Query: 172 NNAKN 176
           + AKN
Sbjct: 139 SGAKN 143

>pdb|2FW6|A Chain A, Structure Of Pure (N5-Carboxyaminoimidazole Ribonucleotide Mutase) Mutant H59n From The Acidophilic Bacterium Acetobacter Aceti, At Ph 5.4 Length = 183

Iteration: 1
 Score = 69.3 bits (168), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 43/125 (34%), Positives = 69/125 (55%), Gaps = 3/125 (2%)
Query: 55  STDAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGI 114
           +  AP+VGIIM S  D   M  A   L++  +P+E  I+  ++       YA +A ERG+
Sbjct: 19  AASAPVVGIIMGSQSDWETMRHADALLTELEIPHETLIVSANRTPDRLADYARTAAERGL 78
Query: 115 KIIIVGDGVEAHLSGVAAANSQILVIRVPLLSEDW-SEDDVINSIRMPSHVQVAS--VPR 171
            +II G G  AHL G+ AA +++ V+ VP+ S      D +++ ++MP  V V +  +  
Sbjct: 79  NVIIAGAGGAAHLPGMCAAWTRLPVLGVPVESRALKGMDSLLSIVQMPGGVPVGTLAIGA 138
Query: 172 NNAKN 176
           + AKN
Sbjct: 139 SGAKN 143

>pdb|2FWB|A Chain A, Structure Of Pure (N5-Carboxyaminoimidazole Ribonucleotide Mutase) H89f From The Acidophilic Bacterium Acetobacter Aceti, At Ph 8 Length = 183

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 43/125 (34%), Positives = 68/125 (54%), Gaps = 3/125 (2%)
Query: 55  STDAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGI 114
           +  AP+VGIIM S  D   M  A   L++  +P+E  I+  H+       YA +A ERG+
Sbjct: 19  AASAPVVGIIMGSQSDWETMRHADALLTELEIPHETLIVSAHRTPDRLADYARTAAERGL 78
Query: 115 KIIIVGDGVEAHLSGVAAANSQILVIRVPLLSEDW-SEDDVINSIRMPSHVQVAS--VPR 171
            +II G G  A L G+ AA +++ V+ VP+ S      D +++ ++MP  V V +  +  
Sbjct: 79  NVIIAGAGGAAFLPGMCAAWTRLPVLGVPVESRALKGMDSLLSIVQMPGGVPVGTLAIGA 138
Query: 172 NNAKN 176
           + AKN
Sbjct: 139 SGAKN 143

>pdb|2FW9|A Chain A, Structure Of Pure (n5-carboxyaminoimidazole Ribonucleotide Mutase) H59f From The Acidophilic Bacterium Acetobacter Aceti, At Ph 8 Length = 183

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 43/125 (34%), Positives = 68/125 (54%), Gaps = 3/125 (2%)
Query: 55  STDAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGI 114
           +  AP+VGIIM S  D   M  A   L++  +P+E  I+   +       YA +A ERG+
Sbjct: 19  AASAPVVGIIMGSQSDWETMRHADALLTELEIPHETLIVSAFRTPDRLADYARTAAERGL 78
Query: 115 KIIIVGDGVEAHLSGVAAANSQILVIRVPLLSEDW-SEDDVINSIRMPSHVQVAS--VPR 171
            +II G G  AHL G+ AA +++ V+ VP+ S      D +++ ++MP  V V +  +  
Sbjct: 79  NVIIAGAGGAAHLPGMCAAWTRLPVLGVPVESRALKGMDSLLSIVQMPGGVPVGTLAIGA 138
Query: 172 NNAKN 176
           + AKN
Sbjct: 139 SGAKN 143

>pdb|2FWI|A Chain A, Structure Of Pure (n5-carboxyaminoimidazole Ribonucleotide Mutase) H59d, From The Acidophilic Bacterium Acetobacter Aceti, Complexed With 5-aminoimidazole Ribonucleotide (air) Length = 183

Iteration: 1
 Score = 68.6 bits (166), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 43/125 (34%), Positives = 68/125 (54%), Gaps = 3/125 (2%)
Query: 55  STDAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGI 114
           +  AP+VGIIM S  D   M  A   L++  +P+E  I+   +       YA +A ERG+
Sbjct: 19  AASAPVVGIIMGSQSDWETMRHADALLTELEIPHETLIVSADRTPDRLADYARTAAERGL 78
Query: 115 KIIIVGDGVEAHLSGVAAANSQILVIRVPLLSEDW-SEDDVINSIRMPSHVQVAS--VPR 171
            +II G G  AHL G+ AA +++ V+ VP+ S      D +++ ++MP  V V +  +  
Sbjct: 79  NVIIAGAGGAAHLPGMCAAWTRLPVLGVPVESRALKGMDSLLSIVQMPGGVPVGTLAIGA 138
Query: 172 NNAKN 176
           + AKN
Sbjct: 139 SGAKN 143

>pdb|2YWX|A Chain A, Crystal Structure Of Phosphoribosylaminoimidazole Carboxylase Catalytic Subunit From Methanocaldococcus Jannaschii Length = 157

Iteration: 1
 Score = 67.4 bits (163), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 42/143 (29%), Positives = 83/143 (58%), Gaps = 3/143 (2%)
Query: 60  IVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIV 119
           ++ IIM S+ DL +   A   L +FGV +E+++   H+  +       ++K     + I 
Sbjct: 1   MICIIMGSESDLKIAEKAVNILKEFGVEFEVRVASAHRTPELVEEIVKNSKA---DVFIA 57
Query: 120 GDGVEAHLSGVAAANSQILVIRVPLLSEDWSEDDVINSIRMPSHVQVASVPRNNAKNAAL 179
             G+ AHL GV A+ +   VI VP+ ++    D +++S++MP  + VA+V  +  +NAA+
Sbjct: 58  IAGLAAHLPGVVASLTTKPVIAVPVDAKLDGLDALLSSVQMPPGIPVATVGIDRGENAAI 117
Query: 180 YAVKVLGIADEDLLERIRKYVEE 202
            A+++L + DE++ +++ +Y E+
Sbjct: 118 LALEILALKDENIAKKLIEYREK 140

>pdb|3ORS|A Chain A, Crystal Structure Of N5-Carboxyaminoimidazole Ribonucleotide Mutase From Staphylococcus Aureus Length = 163

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 48/147 (32%), Positives = 85/147 (57%), Gaps = 3/147 (2%)
Query: 56  TDAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIK 115
           ++A  V +IM S  D  +M ++   L  F +PYE +++  H+  K  + +A  A+ERGI 
Sbjct: 1   SNAMKVAVIMGSSSDWKIMQESCNMLDYFEIPYEKQVVSAHRTPKMMVQFASEARERGIN 60
Query: 116 IIIVGDGVEAHLSGVAAANSQILVIRVPLLSEDWSE-DDVINSIRMPSHVQV--ASVPRN 172
           III G G  AHL G+ A+ + + VI VP+ ++     D +++ ++MP  + V   ++   
Sbjct: 61  IIIAGAGGAAHLPGMVASLTTLPVIGVPIETKSLKGIDSLLSIVQMPGGIPVATTAIGAA 120
Query: 173 NAKNAALYAVKVLGIADEDLLERIRKY 199
            AKNA + A ++L I +  L+E++ +Y
Sbjct: 121 GAKNAGILAARMLSIQNPSLVEKLNQY 147

>pdb|2FW8|A Chain A, Structure Of Pure (N5-Carboxyaminoimidazole Ribonucleotide Mutase) H89g From The Acidophilic Bacterium Acetobacter Aceti, At Ph 8 Length = 183

Iteration: 1
 Score = 60.8 bits (146), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 43/125 (34%), Positives = 68/125 (54%), Gaps = 3/125 (2%)
Query: 55  STDAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGI 114
           +  AP+VGIIM S  D   M  A   L++  +P+E  I+  H+       YA +A ERG+
Sbjct: 19  AASAPVVGIIMGSQSDWETMRHADALLTELEIPHETLIVSAHRTPDRLADYARTAAERGL 78
Query: 115 KIIIVGDGVEAHLSGVAAANSQILVIRVPLLSEDW-SEDDVINSIRMPSHVQVAS--VPR 171
            +II G G  A L G+ AA +++ V+ VP+ S      D +++ ++MP  V V +  +  
Sbjct: 79  NVIIAGAGGAAGLPGMCAAWTRLPVLGVPVESRALKGMDSLLSIVQMPGGVPVGTLAIGA 138
Query: 172 NNAKN 176
           + AKN
Sbjct: 139 SGAKN 143

>pdb|2NSH|A Chain A, E. Coli Pure H45q Mutant Complexed With Nitro-Air Length = 169

Iteration: 1
 Score = 60.8 bits (146), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 37/110 (33%), Positives = 59/110 (53%), Gaps = 1/110 (0%)
Query: 61  VGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVG 120
           V I+M S  D   M  AA       VP+ ++++   +   +  S+A SA+E G ++II G
Sbjct: 10  VAIVMGSKSDWATMQFAAEIFEILNVPHHVEVVSAQRTPDKLFSFAESAEENGYQVIIAG 69
Query: 121 DGVEAHLSGVAAANSQILVIRVPLLSEDWSEDDVINSI-RMPSHVQVASV 169
            G  AHL G+ AA + + V+ VP+ S   S  D + SI +MP  + V ++
Sbjct: 70  AGGAAHLPGMIAAKTLVPVLGVPVQSAALSGVDSLYSIVQMPRGIPVGTL 119

>pdb|2NSL|A Chain A, E. Coli Pure H45n Mutant Complexed With Cair Length = 169

Iteration: 1
 Score = 60.5 bits (145), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 37/110 (33%), Positives = 60/110 (54%), Gaps = 1/110 (0%)
Query: 61  VGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVG 120
           V I+M S  D   M  AA       VP+ ++++  ++   +  S+A SA+E G ++II G
Sbjct: 10  VAIVMGSKSDWATMQFAAEIFEILNVPHHVEVVSANRTPDKLFSFAESAEENGYQVIIAG 69
Query: 121 DGVEAHLSGVAAANSQILVIRVPLLSEDWSEDDVINSI-RMPSHVQVASV 169
            G  AHL G+ AA + + V+ VP+ S   S  D + SI +MP  + V ++
Sbjct: 70  AGGAAHLPGMIAAKTLVPVLGVPVQSAALSGVDSLYSIVQMPRGIPVGTL 119

>pdb|2H31|A Chain A, Crystal Structure Of Human Paics, A Bifunctional Carboxylase And Synthetase In Purine Biosynthesis Length = 425

Iteration: 1
 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 66/136 (48%), Gaps = 3/136 (2%)
Query: 63  IIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVG-D 121
           ++  S  DL       +   +FG+P E+++   H+   E L      +  GI  + V   
Sbjct: 270 VLXGSTSDLGHCEKIKKACGNFGIPCELRVTSAHKGPDETLRIKAEYEGDGIPTVFVAVA 329
Query: 122 GVEAHLSGVAAANSQILVIRVPLLSEDWSEDDVINSIRMPSHVQVASVPRNNAKNAALYA 181
           G    L  V + N+   VI  P L+ DW   DV +S+R+PS +  ++V   + + +A +A
Sbjct: 330 GRSNGLGPVXSGNTAYPVISCPPLTPDWGVQDVWSSLRLPSGLGCSTVL--SPEGSAQFA 387
Query: 182 VKVLGIADEDLLERIR 197
            ++ G+++  +  ++R
Sbjct: 388 AQIFGLSNHLVWSKLR 403

>pdb|3RGG|A Chain A, Crystal Structure Of Treponema Denticola Pure Bound To Air Length = 159

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/145 (29%), Positives = 71/145 (48%), Gaps = 5/145 (3%)
Query: 59  PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYA--LSAKERGIKI 116
           P+V I+M S  D+      A  L  FG+ Y I+I   H+  +  +S      A +R  K+
Sbjct: 3   PLVIILMGSSSDMGHAEKIASELKTFGIEYAIRIGSAHKTAEHVVSMLKEYEALDRP-KL 61
Query: 117 IIVGDGVEAHLSGVAAANSQILVIRVPLLSEDWSEDDVINSIRMPSHVQVASVPRNNAKN 176
            I   G    LSG      +   I  P  S+ ++  D+ +S+RMPS +  A V     KN
Sbjct: 62  YITIAGRSNALSGFVDGFVKGATIACPPPSDSFAGADIYSSLRMPSGISPALV--LEPKN 119
Query: 177 AALYAVKVLGIADEDLLERIRKYVE 201
           AAL A ++  + D+++ + ++ Y+E
Sbjct: 120 AALLAARIFSLYDKEIADSVKSYME 144

>pdb|3RG8|A Chain A, Crystal Structure Of Treponema Denticola Pure Length = 159

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/145 (29%), Positives = 71/145 (48%), Gaps = 5/145 (3%)
Query: 59  PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYA--LSAKERGIKI 116
           P+V I+M S  D+      A  L  FG+ Y I+I   H+  +  +S      A +R  K+
Sbjct: 3   PLVIILMGSSSDMGHAEKIASELKTFGIEYAIRIGSAHKTAEHVVSMLKEYEALDRP-KL 61
Query: 117 IIVGDGVEAHLSGVAAANSQILVIRVPLLSEDWSEDDVINSIRMPSHVQVASVPRNNAKN 176
            I   G    LSG      +   I  P  S+ ++  D+ +S+RMPS +  A V     KN
Sbjct: 62  YITIAGRSNALSGFVDGFVKGATIACPPPSDSFAGADIYSSLRMPSGISPALV--LEPKN 119
Query: 177 AALYAVKVLGIADEDLLERIRKYVE 201
           AAL A ++  + D+++ + ++ Y+E
Sbjct: 120 AALLAARIFSLYDKEIADSVKSYME 144

>pdb|2ATE|A Chain A, Structure Of The Complex Of Pure With Nitroair Length = 169

Iteration: 1
 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/98 (33%), Positives = 50/98 (51%)
Query: 61  VGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVG 120
           V I+  S  D      AA       VP+ ++++  H+   +  S+A SA+E G ++II G
Sbjct: 10  VAIVXGSKSDWATXQFAAEIFEILNVPHHVEVVSAHRTPDKLFSFAESAEENGYQVIIAG 69
Query: 121 DGVEAHLSGVAAANSQILVIRVPLLSEDWSEDDVINSI 158
            G  AHL G  AA + + V+ VP+ S   S  D + SI
Sbjct: 70  AGGAAHLPGXIAAKTLVPVLGVPVQSAALSGVDSLYSI 107

>pdb|1QCZ|A Chain A, Crystal Structure Of E. Coli Pure, An Unusual Mutase That Catalyzes The Conversion Of N5-carboxyaminoimidazole Ribonucleotide (n5-cair) To 4-carboxyaminoimidazole Ribonucleotide (cair) In The Purine Biosynthetic Pathway Length = 169

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/98 (33%), Positives = 50/98 (51%)
Query: 61  VGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVG 120
           V I+  S  D      AA       VP+ ++++  H+   +  S+A SA+E G ++II G
Sbjct: 10  VAIVXGSKSDWATXQFAAEIFEILNVPHHVEVVSAHRTPDKLFSFAESAEENGYQVIIAG 69
Query: 121 DGVEAHLSGVAAANSQILVIRVPLLSEDWSEDDVINSI 158
            G  AHL G  AA + + V+ VP+ S   S  D + SI
Sbjct: 70  AGGAAHLPGXIAAKTLVPVLGVPVQSAALSGVDSLYSI 107

>pdb|3KUU|A Chain A, Structure Of The Pure Phosphoribosylaminoimidazole Carboxylase Catalytic Subunit From Yersinia Pestis Length = 174

Iteration: 1
 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 50/98 (51%)
Query: 61  VGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVG 120
           + I+  S  D      AA  L+   VP+ ++++  H+      S+A  A+  G+ +II G
Sbjct: 15  IAIVXGSKSDWATXQFAADVLTTLNVPFHVEVVSAHRTPDRLFSFAEQAEANGLHVIIAG 74
Query: 121 DGVEAHLSGVAAANSQILVIRVPLLSEDWSEDDVINSI 158
           +G  AHL G  AA + + V+ VP+ S   S  D + SI
Sbjct: 75  NGGAAHLPGXLAAKTLVPVLGVPVQSAALSGVDSLYSI 112

>pdb|1D7A|A Chain A, Crystal Structure Of E. Coli Pure-Mononucleotide Complex. Length = 161

Iteration: 1
 Score = 54.7 bits (130), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 33/98 (33%), Positives = 50/98 (51%)
Query: 61  VGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVG 120
           V I+  S  D      AA       VP+ ++++  H+   +  S+A SA+E G ++II G
Sbjct: 4   VAIVXGSKSDWATXQFAAEIFEILNVPHHVEVVSAHRTPDKLFSFAESAEENGYQVIIAG 63
Query: 121 DGVEAHLSGVAAANSQILVIRVPLLSEDWSEDDVINSI 158
            G  AHL G  AA + + V+ VP+ S   S  D + SI
Sbjct: 64  AGGAAHLPGXIAAKTLVPVLGVPVQSAALSGVDSLYSI 101

>pdb|3TRH|A Chain A, Structure Of A Phosphoribosylaminoimidazole Carboxylase Catalytic Subunit (Pure) From Coxiella Burnetii Length = 169

Iteration: 1
 Score = 47.4 bits (111), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 43/140 (30%), Positives = 74/140 (52%), Gaps = 3/140 (2%)
Query: 60  IVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIV 119
            V I+  SD DL     A   L   G+P+E  IL  H+  KE + +  +A  RG  + I 
Sbjct: 8   FVAILXGSDSDLSTXETAFTELKSLGIPFEAHILSAHRTPKETVEFVENADNRGCAVFIA 67
Query: 120 GDGVEAHLSGVAAANSQILVIRVPLLSEDWSE-DDVINSIRMPSHVQVA--SVPRNNAKN 176
             G+ AHL+G  AA++   VI VP         D ++++++ P  V VA  ++ +  AKN
Sbjct: 68  AAGLAAHLAGTIAAHTLKPVIGVPXAGGSLGGLDALLSTVQXPGGVPVACTAIGKAGAKN 127
Query: 177 AALYAVKVLGIADEDLLERI 196
           AA+ A +++ + D+ + +++
Sbjct: 128 AAILAAQIIALQDKSIAQKL 147

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	202
1o4v_A	183	Phosphoribosylaminoimidazole mutase PURE; structur	5e-46
3lp6_A	174	Phosphoribosylaminoimidazole carboxylase catalyti;	8e-45
3rg8_A	159	Phosphoribosylaminoimidazole carboxylase, PURE PR;	1e-42
3trh_A	169	Phosphoribosylaminoimidazole carboxylase carboxylt	2e-39
3ors_A	163	N5-carboxyaminoimidazole ribonucleotide mutase; is	2e-39
4b4k_A	181	N5-carboxyaminoimidazole ribonucleotide mutase; is	9e-39
1xmp_A	170	PURE, phosphoribosylaminoimidazole carboxylase; pu	1e-38
2ywx_A	157	Phosphoribosylaminoimidazole carboxylase catalyti;	2e-38
3oow_A	166	Phosphoribosylaminoimidazole carboxylase,catalyic;	7e-38
3kuu_A	174	Phosphoribosylaminoimidazole carboxylase catalyti	1e-37
1u11_A	182	PURE (N5-carboxyaminoimidazole ribonucleotide MUT;	1e-37
2h31_A	425	Multifunctional protein ADE2; alpha-beta-alpha, li	1e-33

>1o4v_A Phosphoribosylaminoimidazole mutase PURE; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.77A {Thermotoga maritima} SCOP: c.23.8.1 Length = 183

 Score =  149 bits (378), Expect = 5e-46
 Identities = 64/156 (41%), Positives = 92/156 (58%), Gaps = 1/156 (0%)

Query: 48  EENPNGDSTDAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYAL 107
            +  +      P VGIIM SD DLPVM  AA  L +FG+ YEI I+  H+       YA 
Sbjct: 3   SDKIHHHHHHVPRVGIIMGSDSDLPVMKQAAEILEEFGIDYEITIVSAHRTPDRMFEYAK 62

Query: 108 SAKERGIKIIIVGDGVEAHLSGVAAANSQILVIRVPLLSEDWSEDDVINSI-RMPSHVQV 166
           +A+ERGI++II G G  AHL G+ A+ + + VI VP+ +   +  D + SI +MP  V V
Sbjct: 63  NAEERGIEVIIAGAGGAAHLPGMVASITHLPVIGVPVKTSTLNGLDSLFSIVQMPGGVPV 122

Query: 167 ASVPRNNAKNAALYAVKVLGIADEDLLERIRKYVEE 202
           A+V  NNAKNA + A  +LGI   ++  ++++Y E 
Sbjct: 123 ATVAINNAKNAGILAASILGIKYPEIARKVKEYKER 158

>3lp6_A Phosphoribosylaminoimidazole carboxylase catalyti; alpha and beta protein, structural genomics, PSI-2, protein initiative; 1.70A {Mycobacterium tuberculosis} Length = 174

 Score =  145 bits (369), Expect = 8e-45
 Identities = 60/150 (40%), Positives = 88/150 (58%), Gaps = 1/150 (0%)

Query: 54  DSTDAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERG 113
            + + P VG+IM SD D PVM DAA  L++F +P E++++  H+  +   SYA  A  RG
Sbjct: 3   PAGERPRVGVIMGSDSDWPVMADAAAALAEFDIPAEVRVVSAHRTPEAMFSYARGAAARG 62

Query: 114 IKIIIVGDGVEAHLSGVAAANSQILVIRVPLLSEDWSEDDVINSI-RMPSHVQVASVPRN 172
           +++II G G  AHL G+ AA + + VI VP+        D + SI +MP+ V VA+V   
Sbjct: 63  LEVIIAGAGGAAHLPGMVAAATPLPVIGVPVPLGRLDGLDSLLSIVQMPAGVPVATVSIG 122

Query: 173 NAKNAALYAVKVLGIADEDLLERIRKYVEE 202
            A NA L AV++LG A+  L  RI  + + 
Sbjct: 123 GAGNAGLLAVRMLGAANPQLRARIVAFQDR 152

>3rg8_A Phosphoribosylaminoimidazole carboxylase, PURE PR; purine biosynthesis, lyase; 1.74A {Treponema denticola} PDB: 3rgg_A* Length = 159

 Score =  140 bits (354), Expect = 1e-42
 Identities = 41/145 (28%), Positives = 69/145 (47%), Gaps = 3/145 (2%)

Query: 59  PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKER-GIKII 117
           P+V I+M S  D+      A  L  FG+ Y I+I   H+  +  +S     +     K+ 
Sbjct: 3   PLVIILMGSSSDMGHAEKIASELKTFGIEYAIRIGSAHKTAEHVVSMLKEYEALDRPKLY 62

Query: 118 IVGDGVEAHLSGVAAANSQILVIRVPLLSEDWSEDDVINSIRMPSHVQVASVPRNNAKNA 177
           I   G    LSG      +   I  P  S+ ++  D+ +S+RMPS +  A V     KNA
Sbjct: 63  ITIAGRSNALSGFVDGFVKGATIACPPPSDSFAGADIYSSLRMPSGISPALV--LEPKNA 120

Query: 178 ALYAVKVLGIADEDLLERIRKYVEE 202
           AL A ++  + D+++ + ++ Y+E 
Sbjct: 121 ALLAARIFSLYDKEIADSVKSYMES 145

>3trh_A Phosphoribosylaminoimidazole carboxylase carboxyltransferase subunit; purines, pyrimidines, nucleosides, nucleotides, lyase; 2.20A {Coxiella burnetii} Length = 169

 Score =  131 bits (333), Expect = 2e-39
 Identities = 47/151 (31%), Positives = 75/151 (49%), Gaps = 3/151 (1%)

Query: 55  STDAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGI 114
           + +   V I+M SD DL  M  A   L   G+P+E  IL  H+  KE + +  +A  RG 
Sbjct: 3   AMNKIFVAILMGSDSDLSTMETAFTELKSLGIPFEAHILSAHRTPKETVEFVENADNRGC 62

Query: 115 KIIIVGDGVEAHLSGVAAANSQILVIRVPLLSEDWSEDDVINSI-RMPSHVQVASVPRNN 173
            + I   G+ AHL+G  AA++   VI VP+        D + S  +MP  V VA      
Sbjct: 63  AVFIAAAGLAAHLAGTIAAHTLKPVIGVPMAGGSLGGLDALLSTVQMPGGVPVACTAIGK 122

Query: 174 --AKNAALYAVKVLGIADEDLLERIRKYVEE 202
             AKNAA+ A +++ + D+ + +++ +    
Sbjct: 123 AGAKNAAILAAQIIALQDKSIAQKLVQQRTA 153

>3ors_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase, isomerase,biosynthetic protein; 1.45A {Staphylococcus aureus subsp} Length = 163

 Score =  131 bits (332), Expect = 2e-39
 Identities = 51/147 (34%), Positives = 84/147 (57%), Gaps = 3/147 (2%)

Query: 56  TDAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIK 115
           ++A  V +IM S  D  +M ++   L  F +PYE +++  H+  K  + +A  A+ERGI 
Sbjct: 1   SNAMKVAVIMGSSSDWKIMQESCNMLDYFEIPYEKQVVSAHRTPKMMVQFASEARERGIN 60

Query: 116 IIIVGDGVEAHLSGVAAANSQILVIRVPLLSEDWSEDDVINSI-RMPSHVQVASVP--RN 172
           III G G  AHL G+ A+ + + VI VP+ ++     D + SI +MP  + VA+      
Sbjct: 61  IIIAGAGGAAHLPGMVASLTTLPVIGVPIETKSLKGIDSLLSIVQMPGGIPVATTAIGAA 120

Query: 173 NAKNAALYAVKVLGIADEDLLERIRKY 199
            AKNA + A ++L I +  L+E++ +Y
Sbjct: 121 GAKNAGILAARMLSIQNPSLVEKLNQY 147

>4b4k_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase; 2.50A {Bacillus anthracis} Length = 181

 Score =  130 bits (329), Expect = 9e-39
 Identities = 53/148 (35%), Positives = 80/148 (54%), Gaps = 3/148 (2%)

Query: 55  STDAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGI 114
           S    +VG+IM S  D   M  A   L +  +PYE K++  H+       YA +A+ERG+
Sbjct: 19  SHMKSLVGVIMGSTSDWETMKYACDILDELNIPYEKKVVSAHRTPDYMFEYAETARERGL 78

Query: 115 KIIIVGDGVEAHLSGVAAANSQILVIRVPLLSEDWSEDDVINSI-RMPSHVQVASVPRNN 173
           K+II G G  AHL G+ AA + + VI VP+ S+  +  D + SI +MP  V VA+V    
Sbjct: 79  KVIIAGAGGAAHLPGMVAAKTNLPVIGVPVQSKALNGLDSLLSIVQMPGGVPVATVAIGK 138

Query: 174 --AKNAALYAVKVLGIADEDLLERIRKY 199
             + NA L A ++LG   +D+ + +   
Sbjct: 139 AGSTNAGLLAAQILGSFHDDIHDALELR 166

>1xmp_A PURE, phosphoribosylaminoimidazole carboxylase; purine biosynthesis, spine, lyase; 1.80A {Bacillus anthracis} SCOP: c.23.8.1 Length = 170

 Score =  129 bits (327), Expect = 1e-38
 Identities = 52/153 (33%), Positives = 81/153 (52%), Gaps = 3/153 (1%)

Query: 50  NPNGDSTDAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSA 109
           + +       +VG+IM S  D   M  A   L +  +PYE K++  H+       YA +A
Sbjct: 3   SHHHHHHMKSLVGVIMGSTSDWETMKYACDILDELNIPYEKKVVSAHRTPDYMFEYAETA 62

Query: 110 KERGIKIIIVGDGVEAHLSGVAAANSQILVIRVPLLSEDWSEDDVINSI-RMPSHVQVAS 168
           +ERG+K+II G G  AHL G+ AA + + VI VP+ S+  +  D + SI +MP  V VA+
Sbjct: 63  RERGLKVIIAGAGGAAHLPGMVAAKTNLPVIGVPVQSKALNGLDSLLSIVQMPGGVPVAT 122

Query: 169 VPRNN--AKNAALYAVKVLGIADEDLLERIRKY 199
           V      + NA L A ++LG   +D+ + +   
Sbjct: 123 VAIGKAGSTNAGLLAAQILGSFHDDIHDALELR 155

>2ywx_A Phosphoribosylaminoimidazole carboxylase catalyti; rossmann fold, structural genomics, NPPSFA; 2.31A {Methanocaldococcus jannaschii} Length = 157

 Score =  129 bits (326), Expect = 2e-38
 Identities = 42/143 (29%), Positives = 83/143 (58%), Gaps = 3/143 (2%)

Query: 60  IVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIV 119
           ++ IIM S+ DL +   A   L +FGV +E+++   H+  +       ++K     + I 
Sbjct: 1   MICIIMGSESDLKIAEKAVNILKEFGVEFEVRVASAHRTPELVEEIVKNSKA---DVFIA 57

Query: 120 GDGVEAHLSGVAAANSQILVIRVPLLSEDWSEDDVINSIRMPSHVQVASVPRNNAKNAAL 179
             G+ AHL GV A+ +   VI VP+ ++    D +++S++MP  + VA+V  +  +NAA+
Sbjct: 58  IAGLAAHLPGVVASLTTKPVIAVPVDAKLDGLDALLSSVQMPPGIPVATVGIDRGENAAI 117

Query: 180 YAVKVLGIADEDLLERIRKYVEE 202
            A+++L + DE++ +++ +Y E+
Sbjct: 118 LALEILALKDENIAKKLIEYREK 140

>3oow_A Phosphoribosylaminoimidazole carboxylase,catalyic; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.75A {Francisella tularensis subsp} PDB: 3opq_A* Length = 166

 Score =  127 bits (322), Expect = 7e-38
 Identities = 50/148 (33%), Positives = 83/148 (56%), Gaps = 3/148 (2%)

Query: 55  STDAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGI 114
           +  +  VG+IM S  D   M +    L + G+ YE +++  H+   +   YA +AKERG+
Sbjct: 2   NAMSVQVGVIMGSKSDWSTMKECCDILDNLGIGYECEVVSAHRTPDKMFDYAETAKERGL 61

Query: 115 KIIIVGDGVEAHLSGVAAANSQILVIRVPLLSEDWSEDDVINSI-RMPSHVQVASVP--R 171
           K+II G G  AHL G+ AA + + V+ VP+ S   +  D + SI +MP+ + VA+     
Sbjct: 62  KVIIAGAGGAAHLPGMVAAKTTLPVLGVPVKSSTLNGQDSLLSIVQMPAGIPVATFAIGM 121

Query: 172 NNAKNAALYAVKVLGIADEDLLERIRKY 199
             AKNAAL+A  +L   D ++ + + ++
Sbjct: 122 AGAKNAALFAASILQHTDINIAKALAEF 149

>3kuu_A Phosphoribosylaminoimidazole carboxylase catalyti PURE; 3-layer (ABA) sandwich, rossmann fold, csgid, lyase, structu genomics; 1.41A {Yersinia pestis} PDB: 1d7a_A* 1qcz_A 2ate_A* 2nsl_A* 2nsh_A* 2nsj_A* Length = 174

 Score =  127 bits (321), Expect = 1e-37
 Identities = 48/153 (31%), Positives = 79/153 (51%), Gaps = 3/153 (1%)

Query: 50  NPNGDSTDAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSA 109
           N N        + I+M S  D   M  AA  L+   VP+ ++++  H+      S+A  A
Sbjct: 4   NLNSAYAAGVKIAIVMGSKSDWATMQFAADVLTTLNVPFHVEVVSAHRTPDRLFSFAEQA 63

Query: 110 KERGIKIIIVGDGVEAHLSGVAAANSQILVIRVPLLSEDWSEDDVINSI-RMPSHVQVAS 168
           +  G+ +II G+G  AHL G+ AA + + V+ VP+ S   S  D + SI +MP  + V +
Sbjct: 64  EANGLHVIIAGNGGAAHLPGMLAAKTLVPVLGVPVQSAALSGVDSLYSIVQMPRGIPVGT 123

Query: 169 VP--RNNAKNAALYAVKVLGIADEDLLERIRKY 199
           +   +  A NAAL A ++L + D +L  R+  +
Sbjct: 124 LAIGKAGAANAALLAAQILALHDTELAGRLAHW 156

>1u11_A PURE (N5-carboxyaminoimidazole ribonucleotide MUT; acidophIle, protein stability, lyase; HET: CIT; 1.55A {Acetobacter aceti} SCOP: c.23.8.1 PDB: 2fwj_A* 2fw1_A* 2fwb_A 2fwa_A 2fw9_A 2fw7_A 2fw6_A 2fwp_A* 2fwi_A* 2fw8_A Length = 182

 Score =  127 bits (321), Expect = 1e-37
 Identities = 53/155 (34%), Positives = 80/155 (51%), Gaps = 3/155 (1%)

Query: 48  EENPNGDSTDAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYAL 107
                  +  AP+VGIIM S  D   M  A   L++  +P+E  I+  H+       YA 
Sbjct: 11  SSALEDKAASAPVVGIIMGSQSDWETMRHADALLTELEIPHETLIVSAHRTPDRLADYAR 70

Query: 108 SAKERGIKIIIVGDGVEAHLSGVAAANSQILVIRVPLLSEDWSEDDVINSI-RMPSHVQV 166
           +A ERG+ +II G G  AHL G+ AA +++ V+ VP+ S      D + SI +MP  V V
Sbjct: 71  TAAERGLNVIIAGAGGAAHLPGMCAAWTRLPVLGVPVESRALKGMDSLLSIVQMPGGVPV 130

Query: 167 ASVP--RNNAKNAALYAVKVLGIADEDLLERIRKY 199
            ++    + AKNAAL A  +L + +  L  R+  +
Sbjct: 131 GTLAIGASGAKNAALLAASILALYNPALAARLETW 165

>2h31_A Multifunctional protein ADE2; alpha-beta-alpha, ligase, lyase; 2.80A {Homo sapiens} Length = 425

 Score =  123 bits (309), Expect = 1e-33
 Identities = 38/160 (23%), Positives = 72/160 (45%), Gaps = 3/160 (1%)

Query: 44  TVFEEENPNGDSTDAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEAL 103
            V E       S     V ++M S  DL       +   +FG+P E+++   H+   E L
Sbjct: 251 WVAERVELLLKSESQCRVVVLMGSTSDLGHCEKIKKACGNFGIPCELRVTSAHKGPDETL 310

Query: 104 SYALSAKERGI-KIIIVGDGVEAHLSGVAAANSQILVIRVPLLSEDWSEDDVINSIRMPS 162
                 +  GI  + +   G    L  V + N+   VI  P L+ DW   DV +S+R+PS
Sbjct: 311 RIKAEYEGDGIPTVFVAVAGRSNGLGPVMSGNTAYPVISCPPLTPDWGVQDVWSSLRLPS 370

Query: 163 HVQVASVPRNNAKNAALYAVKVLGIADEDLLERIRKYVEE 202
            +  ++V   + + +A +A ++ G+++  +  ++R  +  
Sbjct: 371 GLGCSTV--LSPEGSAQFAAQIFGLSNHLVWSKLRASILN 408

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	202
3ors_A	163	N5-carboxyaminoimidazole ribonucleotide mutase; is	100.0
3lp6_A	174	Phosphoribosylaminoimidazole carboxylase catalyti;	100.0
3trh_A	169	Phosphoribosylaminoimidazole carboxylase carboxylt	100.0
1xmp_A	170	PURE, phosphoribosylaminoimidazole carboxylase; pu	100.0
3kuu_A	174	Phosphoribosylaminoimidazole carboxylase catalyti	100.0
1o4v_A	183	Phosphoribosylaminoimidazole mutase PURE; structur	100.0
4grd_A	173	N5-CAIR mutase, phosphoribosylaminoimidazole carbo	100.0
3oow_A	166	Phosphoribosylaminoimidazole carboxylase,catalyic;	100.0
4b4k_A	181	N5-carboxyaminoimidazole ribonucleotide mutase; is	100.0
1u11_A	182	PURE (N5-carboxyaminoimidazole ribonucleotide MUT;	100.0
3rg8_A	159	Phosphoribosylaminoimidazole carboxylase, PURE PR;	100.0
2ywx_A	157	Phosphoribosylaminoimidazole carboxylase catalyti;	100.0
2h31_A	425	Multifunctional protein ADE2; alpha-beta-alpha, li	100.0
3uhj_A	387	Probable glycerol dehydrogenase; structural genomi	97.39
1jq5_A	370	Glycerol dehydrogenase; oxidoreductase, NAD, glyce	97.28
3ce9_A	354	Glycerol dehydrogenase; NP_348253.1, 3-dehydroquin	97.04
3bfj_A	387	1,3-propanediol oxidoreductase; opportunistic path	97.0
1o2d_A	371	Alcohol dehydrogenase, iron-containing; TM0920, st	96.96
1ta9_A	450	Glycerol dehydrogenase; oxidoredu; 1.90A {Schizosa	96.82
3ox4_A	383	Alcohol dehydrogenase 2; iron, NAD, oxidoreductase	96.8
3okf_A	390	3-dehydroquinate synthase; structural genomics, ce	96.76
1sg6_A	393	Pentafunctional AROM polypeptide; shikimate pathwa	96.7
3hl0_A	353	Maleylacetate reductase; structur genomics, PSI-2,	96.69
1rrm_A	386	Lactaldehyde reductase; structural genomics, dehyd	96.64
3jzd_A	358	Iron-containing alcohol dehydrogenase; YP_298327.1	96.5
1vlj_A	407	NADH-dependent butanol dehydrogenase; TM0820, stru	96.47
2gru_A	368	2-deoxy-scyllo-inosose synthase; aminoglycoside, 2	96.12
1oj7_A	408	Hypothetical oxidoreductase YQHD; structural genom	95.99
3qbe_A	368	3-dehydroquinate synthase; shikimate pathway, myco	95.94
2pju_A	225	Propionate catabolism operon regulatory protein; s	95.91
1xah_A	354	Sadhqs, 3-dehydroquinate synthase; shikimate pathw	95.69
3iv7_A	364	Alcohol dehydrogenase IV; NP_602249.1, iron-contai	95.58
1ujn_A	348	Dehydroquinate synthase; riken structu genomics/pr	95.4
3m9w_A	313	D-xylose-binding periplasmic protein; xylose bindi	95.32
3egc_A	291	Putative ribose operon repressor; structural genom	95.26
2q5c_A	196	NTRC family transcriptional regulator; structural	95.22
3l49_A	291	ABC sugar (ribose) transporter, periplasmic substr	95.05
3kke_A	303	LACI family transcriptional regulator; structural	94.76
1kq3_A	376	Glycerol dehydrogenase; structural genomics, joint	94.62
3clh_A	343	3-dehydroquinate synthase; shikimate pathway, arom	94.05
3o1i_D	304	Periplasmic protein TORT; ligand free, two compone	93.76
2iks_A	293	DNA-binding transcriptional dual regulator; escher	93.56
3gv0_A	288	Transcriptional regulator, LACI family; transcript	93.49
3k4h_A	292	Putative transcriptional regulator; structural gen	93.48
3rf7_A	375	Iron-containing alcohol dehydrogenase; structural	93.38
3jy6_A	276	Transcriptional regulator, LACI family; NYSGXRC, P	93.3
3o74_A	272	Fructose transport system repressor FRUR; dual tra	93.12
3dbi_A	338	Sugar-binding transcriptional regulator, LACI FAM;	93.08
3miz_A	301	Putative transcriptional regulator protein, LACI f	93.03
3lft_A	295	Uncharacterized protein; ABC, ATPase, cassette, L-	93.0
3s99_A	356	Basic membrane lipoprotein; ssgcid, structural gen	93.0
1dbq_A	289	Purine repressor; transcription regulation, DNA-bi	92.87
3huu_A	305	Transcription regulator like protein; PSI-II, NYSG	92.75
3l6u_A	293	ABC-type sugar transport system periplasmic compo;	92.73
2rgy_A	290	Transcriptional regulator, LACI family; 11011J, NY	92.5
1mjh_A	162	Protein (ATP-binding domain of protein MJ0577); hy	92.41
2qh8_A	302	Uncharacterized protein; conserved domain protein,	92.21
3hcw_A	295	Maltose operon transcriptional repressor; RNA-bind	92.06
3qk7_A	294	Transcriptional regulators; structural genomics, N	92.04
3lkv_A	302	Uncharacterized conserved domain protein; ATPase b	91.92
3h75_A	350	Periplasmic sugar-binding domain protein; protein	91.9
1tjy_A	316	Sugar transport protein; protein-ligand complex, s	91.49
2rjo_A	332	Twin-arginine translocation pathway signal protei;	91.47
3kjx_A	344	Transcriptional regulator, LACI family; LACL famil	91.46
2h3h_A	313	Sugar ABC transporter, periplasmic sugar-binding p	91.15
1tq8_A	163	Hypothetical protein RV1636; MTCY01B2.28, structur	91.06
1jx6_A	342	LUXP protein; protein-ligand complex, signaling pr	91.02
3brs_A	289	Periplasmic binding protein/LACI transcriptional;	91.01
3gyb_A	280	Transcriptional regulators (LACI-family transcript	90.93
3ksm_A	276	ABC-type sugar transport system, periplasmic COMP;	90.75
3k9c_A	289	Transcriptional regulator, LACI family protein; PS	90.64
3gbv_A	304	Putative LACI-family transcriptional regulator; NY	90.6
3bbl_A	287	Regulatory protein of LACI family; protein structu	90.6
3jvd_A	333	Transcriptional regulators; structural genomics, P	90.55
2qv7_A	337	Diacylglycerol kinase DGKB; alpha-beta domain 1, b	90.53
3rot_A	297	ABC sugar transporter, periplasmic sugar binding;	90.46
3c3k_A	285	Alanine racemase; structural genomics, protein str	90.41
3idf_A	138	USP-like protein; universal, stress, PSI, MCSG, st	90.37
2vk2_A	306	YTFQ, ABC transporter periplasmic-binding protein	90.35
2fvy_A	309	D-galactose-binding periplasmic protein; periplasm	90.32
3dlo_A	155	Universal stress protein; unknown function, struct	90.3
3d02_A	303	Putative LACI-type transcriptional regulator; peri	90.09
3msz_A	89	Glutaredoxin 1; alpha-beta sandwich, center for st	89.97
3zyw_A	111	Glutaredoxin-3; metal binding protein; 1.84A {Homo	89.93
2fn9_A	290	Ribose ABC transporter, periplasmic ribose-bindin;	89.87
2dum_A	170	Hypothetical protein PH0823; conserved hypothetica	89.85
2qu7_A	288	Putative transcriptional regulator; structural gen	89.76
3bil_A	348	Probable LACI-family transcriptional regulator; st	89.73
8abp_A	306	L-arabinose-binding protein; binding proteins; HET	89.66
3g1w_A	305	Sugar ABC transporter; sugar-binding protein, baci	89.41
3h5o_A	339	Transcriptional regulator GNTR; transcription regu	89.17
3s3t_A	146	Nucleotide-binding protein, universal stress PROT	89.15
2fep_A	289	Catabolite control protein A; CCPA, transcriptiona	89.11
2x7x_A	325	Sensor protein; transferase, sensor histidine kina	89.01
3uug_A	330	Multiple sugar-binding periplasmic receptor CHVE;	88.72
1f0k_A	364	MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pe	88.56
3loq_A	294	Universal stress protein; structural genomics, PSI	88.29
3d8u_A	275	PURR transcriptional regulator; APC91343.1, vibrio	88.28
2gm3_A	175	Unknown protein; AT3G01520, putative ethylene-resp	88.23
3tb6_A	298	Arabinose metabolism transcriptional repressor; tr	88.16
3brq_A	296	HTH-type transcriptional regulator ASCG; transcrip	88.07
3e3m_A	355	Transcriptional regulator, LACI family; structural	87.9
3clk_A	290	Transcription regulator; 11017J, PSI-II, NYSGXRC,	87.63
2dri_A	271	D-ribose-binding protein; sugar transport; HET: RI	87.48
1qpz_A	340	PURA, protein (purine nucleotide synthesis repress	87.45
1aba_A	87	Glutaredoxin; electron transport; HET: MES; 1.45A	87.39
1gud_A	288	ALBP, D-allose-binding periplasmic protein; peripl	86.83
2hsg_A	332	Glucose-resistance amylase regulator; CCPA, transc	86.58
2ioy_A	283	Periplasmic sugar-binding protein; ribose binding	86.41
3fg9_A	156	Protein of universal stress protein USPA family; A	85.64
2dgd_A	223	223AA long hypothetical arylmalonate decarboxylas;	85.06
1byk_A	255	Protein (trehalose operon repressor); LACI family,	84.54
2fqx_A	318	Membrane lipoprotein TMPC; ABC transport system, l	84.48
3hs3_A	277	Ribose operon repressor; PSI-II, NYSGXRC, periplas	83.86
3s81_A	268	Putative aspartate racemase; structural genomics,	83.84
3u7r_A	190	NADPH-dependent FMN reductase; alpha/beta twisted	83.77
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	83.69
1jye_A	349	Lactose operon repressor; gene regulation, protein	83.63
3h8q_A	114	Thioredoxin reductase 3; oxidoreductase, structura	83.47
2z08_A	137	Universal stress protein family; uncharacterized c	83.02
3s40_A	304	Diacylglycerol kinase; structural genomics, the ce	82.85
2o20_A	332	Catabolite control protein A; CCPA, transcriptiona	82.63
2bon_A	332	Lipid kinase; DAG kinase, transferase; 1.90A {Esch	82.32
3qmx_A	99	Glutaredoxin A, glutaredoxin 3; electron transport	82.23
3gx8_A	121	Monothiol glutaredoxin-5, mitochondrial; TRX fold,	81.98
3mt0_A	290	Uncharacterized protein PA1789; structural genomic	81.97
2xed_A	273	Putative maleate isomerase; nicotinic acid catabol	81.62
3olq_A	319	Universal stress protein E; structural genomics, P	81.38
2hqb_A	296	Transcriptional activator of COMK gene; berkeley s	81.35
3e61_A	277	Putative transcriptional repressor of ribose OPER;	81.19
2wem_A	118	Glutaredoxin-related protein 5; chromosome 14 open	80.93
3hgm_A	147	Universal stress protein TEAD; rossman fold, signa	80.62
2o6l_A	170	UDP-glucuronosyltransferase 2B7; drug metabolism,	80.05

>3ors_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase, isomerase,biosynthetic protein; 1.45A {Staphylococcus aureus subsp}

Probab=100.00  E-value=7e-62  Score=401.75  Aligned_cols=146  Identities=34%  Similarity=0.577  Sum_probs=142.4

Q ss_pred             CCCeEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhhccC
Q 028883           57 DAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQ  136 (202)
Q Consensus        57 ~~~~V~IimGS~SD~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~~T~  136 (202)
                      +.++|+|||||+||+|+|+||+++|++||++||++|+|+||+|+++.+|+++++++|++|||++|||+||||||+|++|+
T Consensus         2 ~~~~V~Iimgs~SD~~v~~~a~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~LpgvvA~~t~   81 (163)
T 3ors_A            2 NAMKVAVIMGSSSDWKIMQESCNMLDYFEIPYEKQVVSAHRTPKMMVQFASEARERGINIIIAGAGGAAHLPGMVASLTT   81 (163)
T ss_dssp             -CCCEEEEESCGGGHHHHHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHTTTTTCCEEEEEEESSCCHHHHHHHHCS
T ss_pred             CCCeEEEEECcHHHHHHHHHHHHHHHHcCCCEEEEEECCcCCHHHHHHHHHHHHhCCCcEEEEECCchhhhHHHHHhccC
Confidence            34789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcEEEecCCCCCCChhh-HHHhhcCCCCCeeeEEecC--ChhhHHHHHHHHHccCCHHHHHHHHHHHhC
Q 028883          137 ILVIRVPLLSEDWSEDD-VINSIRMPSHVQVASVPRN--NAKNAALYAVKVLGIADEDLLERIRKYVEE  202 (202)
Q Consensus       137 ~PVIgVP~~~~~l~G~D-LlS~vqMP~GvpVatV~I~--n~~NAAl~Aa~IL~~~d~~l~~kl~~~~~~  202 (202)
                      +||||||+++++|+|+| ||||||||+|+||+||+||  |++|||++|+|||+++|++||+||++||++
T Consensus        82 ~PVIgVP~~~~~l~G~dsLlS~vqmp~GvPVatV~I~~a~~~nAa~lAa~Il~~~d~~l~~kl~~~r~~  150 (163)
T 3ors_A           82 LPVIGVPIETKSLKGIDSLLSIVQMPGGIPVATTAIGAAGAKNAGILAARMLSIQNPSLVEKLNQYESS  150 (163)
T ss_dssp             SCEEEEEECCTTTTTHHHHHHHHTCCTTSCCEECCSTHHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHH
T ss_pred             CCEEEeeCCCCCCCCHHHHHHHhhCCCCCceEEEEcCCcccHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence            99999999999999999 9999999999999999999  999999999999999999999999999973

>3lp6_A Phosphoribosylaminoimidazole carboxylase catalyti; alpha and beta protein, structural genomics, PSI-2, protein initiative; 1.70A {Mycobacterium tuberculosis} SCOP: c.23.8.0

Probab=100.00  E-value=1.1e-61  Score=403.96  Aligned_cols=147  Identities=39%  Similarity=0.635  Sum_probs=143.0

Q ss_pred             CCCCeEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhhcc
Q 028883           56 TDAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANS  135 (202)
Q Consensus        56 ~~~~~V~IimGS~SD~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~~T  135 (202)
                      .++++|+|||||+||+|+|+||+++|++||++||++|+|+||+|+++.+|+++++++|++|||++|||+||||||+||+|
T Consensus         5 ~~~~~V~IimgS~SD~~v~~~a~~~L~~~gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~LpgvvA~~t   84 (174)
T 3lp6_A            5 GERPRVGVIMGSDSDWPVMADAAAALAEFDIPAEVRVVSAHRTPEAMFSYARGAAARGLEVIIAGAGGAAHLPGMVAAAT   84 (174)
T ss_dssp             -CCCSEEEEESCGGGHHHHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHHHHHTCCEEEEEEESSCCHHHHHHHHC
T ss_pred             CCCCeEEEEECcHHhHHHHHHHHHHHHHcCCCEEEEEECCCCCHHHHHHHHHHHHhCCCCEEEEecCchhhhHHHHHhcc
Confidence            34579999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcEEEecCCCCCCChhh-HHHhhcCCCCCeeeEEecCChhhHHHHHHHHHccCCHHHHHHHHHHHhC
Q 028883          136 QILVIRVPLLSEDWSEDD-VINSIRMPSHVQVASVPRNNAKNAALYAVKVLGIADEDLLERIRKYVEE  202 (202)
Q Consensus       136 ~~PVIgVP~~~~~l~G~D-LlS~vqMP~GvpVatV~I~n~~NAAl~Aa~IL~~~d~~l~~kl~~~~~~  202 (202)
                      ++||||||+++++++|+| ||||||||+|+||+||+|||++|||++|+|||+++|++||+||++||++
T Consensus        85 ~~PVIgVP~~~~~l~G~daLlS~vqmp~GvpVatV~I~~~~nAa~lAa~Il~~~d~~l~~kl~~~r~~  152 (174)
T 3lp6_A           85 PLPVIGVPVPLGRLDGLDSLLSIVQMPAGVPVATVSIGGAGNAGLLAVRMLGAANPQLRARIVAFQDR  152 (174)
T ss_dssp             SSCEEEEEECCSSGGGHHHHHHHHCCCTTCCCEECCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEeeCCCCCCCCHHHHHHHhhCCCCCeeEEEEcCcchHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence            999999999988999999 9999999999999999999999999999999999999999999999963

>3trh_A Phosphoribosylaminoimidazole carboxylase carboxyltransferase subunit; purines, pyrimidines, nucleosides, nucleotides, lyase; 2.20A {Coxiella burnetii}

Probab=100.00  E-value=1.8e-61  Score=401.14  Aligned_cols=145  Identities=32%  Similarity=0.532  Sum_probs=142.3

Q ss_pred             CCeEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhhccCC
Q 028883           58 APIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQI  137 (202)
Q Consensus        58 ~~~V~IimGS~SD~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~~T~~  137 (202)
                      .|+|+|||||+||+|+|+||+++|++|||+||++|+|+||+|+++.+|+++++++|++|||++|||+||||||+||+|++
T Consensus         6 ~~~V~IimgS~SD~~v~~~a~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~LpgvvA~~t~~   85 (169)
T 3trh_A            6 KIFVAILMGSDSDLSTMETAFTELKSLGIPFEAHILSAHRTPKETVEFVENADNRGCAVFIAAAGLAAHLAGTIAAHTLK   85 (169)
T ss_dssp             CCEEEEEESCGGGHHHHHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHHHHTTEEEEEEEECSSCCHHHHHHHTCSS
T ss_pred             CCcEEEEECcHHhHHHHHHHHHHHHHcCCCEEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEECChhhhhHHHHHhcCCC
Confidence            47999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cEEEecCCCCCCChhh-HHHhhcCCCCCeeeEEecC--ChhhHHHHHHHHHccCCHHHHHHHHHHHhC
Q 028883          138 LVIRVPLLSEDWSEDD-VINSIRMPSHVQVASVPRN--NAKNAALYAVKVLGIADEDLLERIRKYVEE  202 (202)
Q Consensus       138 PVIgVP~~~~~l~G~D-LlS~vqMP~GvpVatV~I~--n~~NAAl~Aa~IL~~~d~~l~~kl~~~~~~  202 (202)
                      ||||||+++++|+|+| ||||||||+|+||+||+||  |++|||++|+|||+++|++||+||++||++
T Consensus        86 PVIgVP~~~~~l~G~dsLlS~vqmp~GvPVatV~I~~a~~~nAa~lAa~Il~~~d~~l~~kl~~~r~~  153 (169)
T 3trh_A           86 PVIGVPMAGGSLGGLDALLSTVQMPGGVPVACTAIGKAGAKNAAILAAQIIALQDKSIAQKLVQQRTA  153 (169)
T ss_dssp             CEEEEECCCSTTTTHHHHHHHHCCCTTSCCEECCSTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CEEEeecCCCCCCCHHHHHHhhcCCCCCceEEEecCCccchHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            9999999998999999 9999999999999999999  999999999999999999999999999973

>1xmp_A PURE, phosphoribosylaminoimidazole carboxylase; purine biosynthesis, spine, lyase; 1.80A {Bacillus anthracis} SCOP: c.23.8.1

Probab=100.00  E-value=1.9e-61  Score=401.33  Aligned_cols=145  Identities=35%  Similarity=0.573  Sum_probs=142.6

Q ss_pred             CCeEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhhccCC
Q 028883           58 APIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQI  137 (202)
Q Consensus        58 ~~~V~IimGS~SD~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~~T~~  137 (202)
                      +|+|+|||||+||+|+|+||+++|++|||+||++|+|+||+|+++.+|+++++++|++|||++|||+||||||+|++|++
T Consensus        11 ~~~V~IimGS~SD~~v~~~a~~~L~~~Gi~~dv~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~AG~aa~LpgvvA~~t~~   90 (170)
T 1xmp_A           11 KSLVGVIMGSTSDWETMKYACDILDELNIPYEKKVVSAHRTPDYMFEYAETARERGLKVIIAGAGGAAHLPGMVAAKTNL   90 (170)
T ss_dssp             CCSEEEEESSGGGHHHHHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHTTTTTCCEEEEEEESSCCHHHHHHTTCCS
T ss_pred             CCcEEEEECcHHHHHHHHHHHHHHHHcCCCEEEEEEeccCCHHHHHHHHHHHHhCCCcEEEEECCchhhhHHHHHhccCC
Confidence            48999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cEEEecCCCCCCChhh-HHHhhcCCCCCeeeEEecC--ChhhHHHHHHHHHccCCHHHHHHHHHHHhC
Q 028883          138 LVIRVPLLSEDWSEDD-VINSIRMPSHVQVASVPRN--NAKNAALYAVKVLGIADEDLLERIRKYVEE  202 (202)
Q Consensus       138 PVIgVP~~~~~l~G~D-LlS~vqMP~GvpVatV~I~--n~~NAAl~Aa~IL~~~d~~l~~kl~~~~~~  202 (202)
                      ||||||++++.++|+| ||||||||+|+||+||+||  |++|||++|+|||+++|++||+||++||++
T Consensus        91 PVIgVP~~~~~l~G~daLlSivqmP~GvpVatV~I~~a~~~nAallAaqIla~~d~~l~~kl~~~r~~  158 (170)
T 1xmp_A           91 PVIGVPVQSKALNGLDSLLSIVQMPGGVPVATVAIGKAGSTNAGLLAAQILGSFHDDIHDALELRREA  158 (170)
T ss_dssp             CEEEEEECCTTTTTHHHHHHHHCCCTTCCCEECCSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CEEEeeCCCCCCCcHHHHHHHhcCCCCCeeEEEecCCcchHHHHHHHHHHHccCCHHHHHHHHHHHHH
Confidence            9999999998999999 9999999999999999999  999999999999999999999999999973

>3kuu_A Phosphoribosylaminoimidazole carboxylase catalyti PURE; 3-layer (ABA) sandwich, rossmann fold, csgid, lyase, structu genomics; 1.41A {Yersinia pestis} SCOP: c.23.8.1 PDB: 1d7a_A* 1qcz_A 2ate_A* 2nsl_A* 2nsh_A* 2nsj_A*

Probab=100.00  E-value=3.3e-61  Score=401.06  Aligned_cols=146  Identities=30%  Similarity=0.515  Sum_probs=142.7

Q ss_pred             CCCeEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhhccC
Q 028883           57 DAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQ  136 (202)
Q Consensus        57 ~~~~V~IimGS~SD~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~~T~  136 (202)
                      .+++|+|||||+||+|+|+||+++|++|||+||++|+|+||+|+++.+|+++++++|++|||++|||+||||||+|++|+
T Consensus        11 m~~~V~IimGS~SD~~v~~~a~~~L~~~Gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~LpgvvA~~t~   90 (174)
T 3kuu_A           11 AGVKIAIVMGSKSDWATMQFAADVLTTLNVPFHVEVVSAHRTPDRLFSFAEQAEANGLHVIIAGNGGAAHLPGMLAAKTL   90 (174)
T ss_dssp             CCCCEEEEESSGGGHHHHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHTTTTTCSEEEEEEESSCCHHHHHHHTCS
T ss_pred             CCCcEEEEECcHHHHHHHHHHHHHHHHcCCCEEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEECChhhhhHHHHHhccC
Confidence            34789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcEEEecCCCCCCChhh-HHHhhcCCCCCeeeEEecC--ChhhHHHHHHHHHccCCHHHHHHHHHHHhC
Q 028883          137 ILVIRVPLLSEDWSEDD-VINSIRMPSHVQVASVPRN--NAKNAALYAVKVLGIADEDLLERIRKYVEE  202 (202)
Q Consensus       137 ~PVIgVP~~~~~l~G~D-LlS~vqMP~GvpVatV~I~--n~~NAAl~Aa~IL~~~d~~l~~kl~~~~~~  202 (202)
                      +||||||+++++|+|+| ||||||||+|+||+||+||  |++|||++|+|||+++|++||+||++||++
T Consensus        91 ~PVIgVP~~~~~l~G~dsLlS~vqmP~GvPVatV~I~~a~~~nAa~lAa~ILa~~d~~l~~kl~~~r~~  159 (174)
T 3kuu_A           91 VPVLGVPVQSAALSGVDSLYSIVQMPRGIPVGTLAIGKAGAANAALLAAQILALHDTELAGRLAHWRQS  159 (174)
T ss_dssp             SCEEEEEECCTTTTTHHHHHHHHTCCTTSCCEECCSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CCEEEeeCCCCCCCCHHHHHHhhhCCCCCeeEEEEeCCccchHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            99999999998999999 9999999999999999999  999999999999999999999999999973

>1o4v_A Phosphoribosylaminoimidazole mutase PURE; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.77A {Thermotoga maritima} SCOP: c.23.8.1

Probab=100.00  E-value=6e-61  Score=402.17  Aligned_cols=144  Identities=43%  Similarity=0.705  Sum_probs=142.1

Q ss_pred             CeEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhhccCCc
Q 028883           59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQIL  138 (202)
Q Consensus        59 ~~V~IimGS~SD~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~~T~~P  138 (202)
                      |+|+|||||+||+|+|+||+++|++|||+||++|+|+||+|+++.+|+++++++|++|||++|||+||||||+||+|++|
T Consensus        14 ~~V~IimGS~SD~~v~~~a~~~L~~~Gi~~dv~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~AG~aa~LpgvvA~~t~~P   93 (183)
T 1o4v_A           14 PRVGIIMGSDSDLPVMKQAAEILEEFGIDYEITIVSAHRTPDRMFEYAKNAEERGIEVIIAGAGGAAHLPGMVASITHLP   93 (183)
T ss_dssp             CEEEEEESCGGGHHHHHHHHHHHHHTTCEEEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEEESSCCHHHHHHHHCSSC
T ss_pred             CeEEEEeccHHHHHHHHHHHHHHHHcCCCeEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEecCcccccHHHHHhccCCC
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEecCCCCCCChhh-HHHhhcCCCCCeeeEEecCChhhHHHHHHHHHccCCHHHHHHHHHHHhC
Q 028883          139 VIRVPLLSEDWSEDD-VINSIRMPSHVQVASVPRNNAKNAALYAVKVLGIADEDLLERIRKYVEE  202 (202)
Q Consensus       139 VIgVP~~~~~l~G~D-LlS~vqMP~GvpVatV~I~n~~NAAl~Aa~IL~~~d~~l~~kl~~~~~~  202 (202)
                      |||||++++.++|+| ||||||||+|+||+||+|||++|||++|+|||+++|++||+||++||++
T Consensus        94 VIgVP~~~~~l~G~dsLlSivqmP~GvpVatV~Id~~~nAa~lAaqIla~~d~~l~~kL~~~r~~  158 (183)
T 1o4v_A           94 VIGVPVKTSTLNGLDSLFSIVQMPGGVPVATVAINNAKNAGILAASILGIKYPEIARKVKEYKER  158 (183)
T ss_dssp             EEEEEECCTTTTTHHHHHHHHTCCTTCCCEECCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             EEEeeCCCCCCCcHHHHHHHhcCCCCCeeEEEecCCchHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            999999998999999 9999999999999999999999999999999999999999999999973

>4grd_A N5-CAIR mutase, phosphoribosylaminoimidazole carboxylase catalyti; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures; 1.85A {Burkholderia cenocepacia}

Probab=100.00  E-value=1.2e-60  Score=397.31  Aligned_cols=149  Identities=38%  Similarity=0.594  Sum_probs=144.3

Q ss_pred             CCCCCCeEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhh
Q 028883           54 DSTDAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAA  133 (202)
Q Consensus        54 ~~~~~~~V~IimGS~SD~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~  133 (202)
                      .....|+|+|||||+||+|+|+||+++|++|||+||++|+|+||+|+++.+|+++++++|++|||++|||+||||||+|+
T Consensus         8 ~~~~~P~V~IimGS~SD~~v~~~a~~~l~~~gi~~ev~V~saHR~p~~l~~~~~~a~~~g~~ViIa~AG~aahLpgvvA~   87 (173)
T 4grd_A            8 HTHSAPLVGVLMGSSSDWDVMKHAVAILQEFGVPYEAKVVSAHRMPDEMFDYAEKARERGLRAIIAGAGGAAHLPGMLAA   87 (173)
T ss_dssp             TCCSSCSEEEEESSGGGHHHHHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHHTTTTCSEEEEEEESSCCHHHHHHH
T ss_pred             CCCCCCeEEEEeCcHhHHHHHHHHHHHHHHcCCCEEEEEEccccCHHHHHHHHHHHHhcCCeEEEEeccccccchhhhee
Confidence            34456899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCcEEEecCCCCCCChhh-HHHhhcCCCCCeeeEEecC--ChhhHHHHHHHHHccCCHHHHHHHHHHHhC
Q 028883          134 NSQILVIRVPLLSEDWSEDD-VINSIRMPSHVQVASVPRN--NAKNAALYAVKVLGIADEDLLERIRKYVEE  202 (202)
Q Consensus       134 ~T~~PVIgVP~~~~~l~G~D-LlS~vqMP~GvpVatV~I~--n~~NAAl~Aa~IL~~~d~~l~~kl~~~~~~  202 (202)
                      +|++||||||+++++++|+| ||||||||+|+||+||.||  |++|||++|+|||+++|++||+||++||++
T Consensus        88 ~t~~PVIgVPv~~~~l~G~dsLlSivqMP~Gvpvatv~i~~~~a~NAallA~~ILa~~d~~l~~kl~~~r~~  159 (173)
T 4grd_A           88 KTTVPVLGVPVASKYLKGVDSLHSIVQMPKGVPVATFAIGEAGAANAALFAVSILSGNSVDYANRLAAFRVR  159 (173)
T ss_dssp             HCCSCEEEEEECCTTTTTHHHHHHHHCCCTTSCCEECCSSHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred             cCCCCEEEEEcCCCCCCchhHHHHHHhCCCCCCceEEecCCcchHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            99999999999999999999 9999999999999999999  999999999999999999999999999973

>3oow_A Phosphoribosylaminoimidazole carboxylase,catalyic; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.75A {Francisella tularensis subsp} SCOP: c.23.8.1 PDB: 3opq_A*

Probab=100.00  E-value=9.5e-61  Score=395.93  Aligned_cols=145  Identities=34%  Similarity=0.586  Sum_probs=141.7

Q ss_pred             CCeEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhhccCC
Q 028883           58 APIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQI  137 (202)
Q Consensus        58 ~~~V~IimGS~SD~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~~T~~  137 (202)
                      .|+|+|||||+||+|+|+||+++|++||++||++|+|+||+|+++.+|+++++++|++|||++|||+||||||+||+|++
T Consensus         5 ~p~V~IimgS~SD~~v~~~a~~~l~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~~t~~   84 (166)
T 3oow_A            5 SVQVGVIMGSKSDWSTMKECCDILDNLGIGYECEVVSAHRTPDKMFDYAETAKERGLKVIIAGAGGAAHLPGMVAAKTTL   84 (166)
T ss_dssp             CEEEEEEESSGGGHHHHHHHHHHHHHTTCEEEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEECSSCCHHHHHHHTCSS
T ss_pred             CCeEEEEECcHHhHHHHHHHHHHHHHcCCCEEEEEEcCcCCHHHHHHHHHHHHhCCCcEEEEECCcchhhHHHHHhccCC
Confidence            37899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cEEEecCCCCCCChhh-HHHhhcCCCCCeeeEEecCC--hhhHHHHHHHHHccCCHHHHHHHHHHHhC
Q 028883          138 LVIRVPLLSEDWSEDD-VINSIRMPSHVQVASVPRNN--AKNAALYAVKVLGIADEDLLERIRKYVEE  202 (202)
Q Consensus       138 PVIgVP~~~~~l~G~D-LlS~vqMP~GvpVatV~I~n--~~NAAl~Aa~IL~~~d~~l~~kl~~~~~~  202 (202)
                      ||||||+++++|+|+| ||||||||+|+||+||+|||  ++|||++|+|||+++|++||+||++||++
T Consensus        85 PVIgVP~~~~~l~G~dsLlS~vqmp~gvpVatV~I~~ag~~nAa~lAa~Il~~~d~~l~~kl~~~r~~  152 (166)
T 3oow_A           85 PVLGVPVKSSTLNGQDSLLSIVQMPAGIPVATFAIGMAGAKNAALFAASILQHTDINIAKALAEFRAE  152 (166)
T ss_dssp             CEEEEECCCTTTTTHHHHHHHHTCCTTSCCEECCSTHHHHHHHHHHHHHHHGGGCHHHHHHHHHHHHH
T ss_pred             CEEEeecCcCCCCCHHHHHHHhcCCCCCceEEEecCCccchHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            9999999998999999 99999999999999999995  99999999999999999999999999973

>4b4k_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase; 2.50A {Bacillus anthracis}

Probab=100.00  E-value=1.5e-60  Score=399.00  Aligned_cols=146  Identities=35%  Similarity=0.562  Sum_probs=142.0

Q ss_pred             CCCeEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhhccC
Q 028883           57 DAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQ  136 (202)
Q Consensus        57 ~~~~V~IimGS~SD~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~~T~  136 (202)
                      .+|+|+|||||+||||+|++|.++|++|||+||++|+||||+|+++.+|+++++++|++|||++|||+||||||+|++|+
T Consensus        21 mkp~V~IimGS~SD~~v~~~a~~~L~~~gI~~e~~V~SAHRtp~~l~~~~~~a~~~g~~ViIa~AG~aahLpGvvAa~T~  100 (181)
T 4b4k_A           21 MKSLVGVIMGSTSDWETMKYACDILDELNIPYEKKVVSAHRTPDYMFEYAETARERGLKVIIAGAGGAAHLPGMVAAKTN  100 (181)
T ss_dssp             -CCSEEEEESSGGGHHHHHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHTTTTTCCEEEEEECSSCCHHHHHHTTCC
T ss_pred             CCccEEEEECCHhHHHHHHHHHHHHHHcCCCeeEEEEccccChHHHHHHHHHHHhcCceEEEEeccccccchhhHHhcCC
Confidence            34789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcEEEecCCCCCCChhh-HHHhhcCCCCCeeeEEecC--ChhhHHHHHHHHHccCCHHHHHHHHHHHhC
Q 028883          137 ILVIRVPLLSEDWSEDD-VINSIRMPSHVQVASVPRN--NAKNAALYAVKVLGIADEDLLERIRKYVEE  202 (202)
Q Consensus       137 ~PVIgVP~~~~~l~G~D-LlS~vqMP~GvpVatV~I~--n~~NAAl~Aa~IL~~~d~~l~~kl~~~~~~  202 (202)
                      +||||||++++.++|+| ||||||||+|+||+||+|+  +++|||++|+|||+++|++||+||++||++
T Consensus       101 ~PVIGVPv~s~~l~G~DsLlSivQMP~GvpVaTvaig~~ga~NAallA~qILa~~d~~l~~kl~~~r~~  169 (181)
T 4b4k_A          101 LPVIGVPVQSKALNGLDSLLSIVQMPGGVPVATVAIGKAGSTNAGLLAAQILGSFHDDIHDALELRREA  169 (181)
T ss_dssp             SCEEEEECCCTTTTTHHHHHHHHTCCTTCCCEECCSSHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             CCEEEEecCCCCccchhhHHHHHhCCCCCceEEEecCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Confidence            99999999998999999 9999999999999999999  779999999999999999999999999973

>1u11_A PURE (N5-carboxyaminoimidazole ribonucleotide MUT; acidophIle, protein stability, lyase; HET: CIT; 1.55A {Acetobacter aceti} SCOP: c.23.8.1 PDB: 2fwj_A* 2fw1_A* 2fwb_A 2fwa_A 2fw9_A 2fw7_A 2fw6_A 2fwp_A* 2fwi_A* 2fw8_A

Probab=100.00  E-value=1.8e-60  Score=399.03  Aligned_cols=145  Identities=35%  Similarity=0.546  Sum_probs=142.3

Q ss_pred             CCeEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhhccCC
Q 028883           58 APIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQI  137 (202)
Q Consensus        58 ~~~V~IimGS~SD~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~~T~~  137 (202)
                      .++|+|||||+||+|+|+||+++|++|||+||++|+|+||+|+++.+|+++++++|++|||++|||+||||||+|++|++
T Consensus        21 ~~~V~IimGS~SD~~v~~~a~~~L~~~Gi~~dv~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~AG~aa~LpgvvA~~t~~  100 (182)
T 1u11_A           21 APVVGIIMGSQSDWETMRHADALLTELEIPHETLIVSAHRTPDRLADYARTAAERGLNVIIAGAGGAAHLPGMCAAWTRL  100 (182)
T ss_dssp             CCSEEEEESSGGGHHHHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEEESSCCHHHHHHHHCSS
T ss_pred             CCEEEEEECcHHHHHHHHHHHHHHHHcCCCeEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEecCchhhhHHHHHhccCC
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cEEEecCCCCCCChhh-HHHhhcCCCCCeeeEEecC--ChhhHHHHHHHHHccCCHHHHHHHHHHHhC
Q 028883          138 LVIRVPLLSEDWSEDD-VINSIRMPSHVQVASVPRN--NAKNAALYAVKVLGIADEDLLERIRKYVEE  202 (202)
Q Consensus       138 PVIgVP~~~~~l~G~D-LlS~vqMP~GvpVatV~I~--n~~NAAl~Aa~IL~~~d~~l~~kl~~~~~~  202 (202)
                      ||||||++++.++|+| ||||||||+|+||+||+||  |++|||++|+|||+++|++||+||++||++
T Consensus       101 PVIgVP~~~~~l~G~dsLlSivqmP~GvpVatV~I~~a~~~nAallAaqIla~~d~~l~~kL~~~r~~  168 (182)
T 1u11_A          101 PVLGVPVESRALKGMDSLLSIVQMPGGVPVGTLAIGASGAKNAALLAASILALYNPALAARLETWRAL  168 (182)
T ss_dssp             CEEEEEECCTTTTTHHHHHHHHCCCTTSCCEECCSSHHHHHHHHHHHHHHHGGGCHHHHHHHHHHHHH
T ss_pred             CEEEeeCCCCCCCcHHHHHHHhcCCCCCceEEEecCCccchHHHHHHHHHHccCCHHHHHHHHHHHHH
Confidence            9999999998999999 9999999999999999999  999999999999999999999999999973

>3rg8_A Phosphoribosylaminoimidazole carboxylase, PURE PR; purine biosynthesis, lyase; 1.74A {Treponema denticola} SCOP: c.23.8.0 PDB: 3rgg_A*

Probab=100.00  E-value=1.7e-59  Score=386.30  Aligned_cols=143  Identities=29%  Similarity=0.434  Sum_probs=138.9

Q ss_pred             CCeEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhc-CceEEEEecCCcCchhhhhhhccC
Q 028883           58 APIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKER-GIKIIIVGDGVEAHLSGVAAANSQ  136 (202)
Q Consensus        58 ~~~V~IimGS~SD~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~-g~~ViIa~AG~aa~LpgvvA~~T~  136 (202)
                      +|+|+|||||+||+|+|+||+++|++||++||++|+|+||+|+++.+|+++++++ |++|||++|||+||||||+||+|+
T Consensus         2 ~~~V~Iimgs~SD~~v~~~a~~~l~~~gi~~ev~V~saHR~p~~~~~~~~~a~~~~~~~ViIa~AG~aa~LpgvvA~~t~   81 (159)
T 3rg8_A            2 RPLVIILMGSSSDMGHAEKIASELKTFGIEYAIRIGSAHKTAEHVVSMLKEYEALDRPKLYITIAGRSNALSGFVDGFVK   81 (159)
T ss_dssp             CCEEEEEESSGGGHHHHHHHHHHHHHTTCEEEEEECCTTTCHHHHHHHHHHHHTSCSCEEEEEECCSSCCHHHHHHHHSS
T ss_pred             CCeEEEEECcHHHHHHHHHHHHHHHHcCCCEEEEEEcccCCHHHHHHHHHHhhhcCCCcEEEEECCchhhhHHHHHhccC
Confidence            3789999999999999999999999999999999999999999999999999986 799999999999999999999999


Q ss_pred             CcEEEecCCCCCCChhhHHHhhcCCCCCeeeEEecCChhhHHHHHHHHHccCCHHHHHHHHHHHhC
Q 028883          137 ILVIRVPLLSEDWSEDDVINSIRMPSHVQVASVPRNNAKNAALYAVKVLGIADEDLLERIRKYVEE  202 (202)
Q Consensus       137 ~PVIgVP~~~~~l~G~DLlS~vqMP~GvpVatV~I~n~~NAAl~Aa~IL~~~d~~l~~kl~~~~~~  202 (202)
                      +||||||+++++++|+|||||||||+|+||+||  ||++|||++|+|||+++|++||+||++||++
T Consensus        82 ~PVIgVP~~~~~l~G~dLlS~vqmp~GvpVatv--~~~~nAa~lA~~Il~~~d~~l~~kl~~~r~~  145 (159)
T 3rg8_A           82 GATIACPPPSDSFAGADIYSSLRMPSGISPALV--LEPKNAALLAARIFSLYDKEIADSVKSYMES  145 (159)
T ss_dssp             SCEEECCCCCCGGGGTHHHHHHCCCTTCCCEEC--CSHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             CCEEEeeCCCCCCCCccHHHHHhCCCCCceEEe--cCchHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence            999999999989999999999999999999998  9999999999999999999999999999963

>2ywx_A Phosphoribosylaminoimidazole carboxylase catalyti; rossmann fold, structural genomics, NPPSFA; 2.31A {Methanocaldococcus jannaschii}

Probab=100.00  E-value=5.7e-59  Score=382.45  Aligned_cols=139  Identities=30%  Similarity=0.530  Sum_probs=135.0

Q ss_pred             eEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhhccCCcE
Q 028883           60 IVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQILV  139 (202)
Q Consensus        60 ~V~IimGS~SD~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~~T~~PV  139 (202)
                      +|+|||||+||+|+|+||+++|++||++||++|+|+||+|+++.+|++++++   +|||++|||+||||||+|++|++||
T Consensus         1 ~V~Iimgs~SD~~v~~~a~~~l~~~gi~~dv~V~saHR~p~~~~~~~~~a~~---~ViIa~AG~aa~Lpgvva~~t~~PV   77 (157)
T 2ywx_A            1 MICIIMGSESDLKIAEKAVNILKEFGVEFEVRVASAHRTPELVEEIVKNSKA---DVFIAIAGLAAHLPGVVASLTTKPV   77 (157)
T ss_dssp             CEEEEESSGGGHHHHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHCCC---SEEEEEEESSCCHHHHHHTTCSSCE
T ss_pred             CEEEEEccHHHHHHHHHHHHHHHHcCCCeEEEEEcccCCHHHHHHHHHhcCC---CEEEEEcCchhhhHHHHHhccCCCE
Confidence            4899999999999999999999999999999999999999999999998765   9999999999999999999999999


Q ss_pred             EEecCCCCCCChhh-HHHhhcCCCCCeeeEEecCChhhHHHHHHHHHccCCHHHHHHHHHHHhC
Q 028883          140 IRVPLLSEDWSEDD-VINSIRMPSHVQVASVPRNNAKNAALYAVKVLGIADEDLLERIRKYVEE  202 (202)
Q Consensus       140 IgVP~~~~~l~G~D-LlS~vqMP~GvpVatV~I~n~~NAAl~Aa~IL~~~d~~l~~kl~~~~~~  202 (202)
                      ||||+ ++.++|+| ||||||||+|+||+||+|||++|||++|+|||+++|++||+||++||++
T Consensus        78 IgVP~-~~~l~G~daLlS~vqmP~gvpVatV~I~~~~nAa~lA~~Il~~~d~~l~~kl~~~r~~  140 (157)
T 2ywx_A           78 IAVPV-DAKLDGLDALLSSVQMPPGIPVATVGIDRGENAAILALEILALKDENIAKKLIEYREK  140 (157)
T ss_dssp             EEEEE-CSSGGGHHHHHHHHSCCTTSCCEECCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             EEecC-CCccCcHHHHHHHhcCCCCCeeEEEecCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            99999 77899999 9999999999999999999999999999999999999999999999973

>2h31_A Multifunctional protein ADE2; alpha-beta-alpha, ligase, lyase; 2.80A {Homo sapiens}

Probab=100.00  E-value=1.6e-54  Score=401.01  Aligned_cols=184  Identities=20%  Similarity=0.256  Sum_probs=151.3

Q ss_pred             CCCceeeeeecCceeEecCChhhhhhccccCcCCCCCCccccccCCCCCCCCCCeEEEEecCCCCHHHHHHHHHHHHHhC
Q 028883            6 KRPNSVRTVSRGTIPVLASSNGSATSRRKDDSSVREPSTVFEEENPNGDSTDAPIVGIIMESDLDLPVMNDAARTLSDFG   85 (202)
Q Consensus         6 ~~~~~~~~~~~ghi~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~IimGS~SD~~v~~~a~~~L~~~g   85 (202)
                      ++++++||++|-..+++.+++++++....++.         ..+.....+...++|+|||||+||+|+|+||+.+|++||
T Consensus       222 ~~~~~DK~~~R~~~~~~~~~l~~v~~~Y~eVa---------~rL~i~~~~~~~~~V~Ii~gs~SD~~~~~~a~~~l~~~g  292 (425)
T 2h31_A          222 RSQQKDKQSYRDLKEVTPEGLQMVKKNFEWVA---------ERVELLLKSESQCRVVVLMGSTSDLGHCEKIKKACGNFG  292 (425)
T ss_dssp             -----------------CCSSSCCCCCHHHHH---------TTGGGGGSCSCCCEEEEEESCGGGHHHHHHHHHHHHHTT
T ss_pred             CCCcccHHHHHhccccchhhHHHHHHHHHHHH---------HHhhcccCccCCCeEEEEecCcccHHHHHHHHHHHHHcC
Confidence            47789999999999999998888887777765         221110013344799999999999999999999999999


Q ss_pred             CCeEEEEEccCCCchHHHHHHHHHhhcCc-eEEEEecCCcCchhhhhhhccCCcEEEecCCCCCCChhh-HHHhhcCCCC
Q 028883           86 VPYEIKILPPHQNCKEALSYALSAKERGI-KIIIVGDGVEAHLSGVAAANSQILVIRVPLLSEDWSEDD-VINSIRMPSH  163 (202)
Q Consensus        86 i~~ev~V~SaHRtp~~l~~~~~~~~~~g~-~ViIa~AG~aa~LpgvvA~~T~~PVIgVP~~~~~l~G~D-LlS~vqMP~G  163 (202)
                      ++||++|+||||+|+++.+|+++++++|+ +||||+|||+||||||+||+|++||||||++ ..++|+| ||||||||+|
T Consensus       293 i~~~v~V~saHR~p~~~~~~~~~~~~~g~~~viIa~AG~~a~Lpgvva~~t~~PVIgvP~~-~~~~G~daLls~vqmp~g  371 (425)
T 2h31_A          293 IPCELRVTSAHKGPDETLRIKAEYEGDGIPTVFVAVAGRSNGLGPVMSGNTAYPVISCPPL-TPDWGVQDVWSSLRLPSG  371 (425)
T ss_dssp             CCEEEEECCTTTCHHHHHHHHHHHHTTCCCEEEEEECCSSCCHHHHHHHHCSSCEEECCCC-CTTTHHHHGGGTSSCCSS
T ss_pred             CceEEeeeeccCCHHHHHHHHHHHHHCCCCeEEEEEcCcccchHhHHhccCCCCEEEeeCc-cccccHHHHHHHhcCCCC
Confidence            99999999999999999999999999999 6999999999999999999999999999997 5699999 9999999999


Q ss_pred             CeeeEEecCChhhHHHHHHHHHccCCHHHHHHHHHHHh
Q 028883          164 VQVASVPRNNAKNAALYAVKVLGIADEDLLERIRKYVE  201 (202)
Q Consensus       164 vpVatV~I~n~~NAAl~Aa~IL~~~d~~l~~kl~~~~~  201 (202)
                      +||+||+  |++|||++|+|||+++|++||+||++||+
T Consensus       372 ~pvatv~--~~~nAa~~A~~Il~~~~~~l~~kl~~~~~  407 (425)
T 2h31_A          372 LGCSTVL--SPEGSAQFAAQIFGLSNHLVWSKLRASIL  407 (425)
T ss_dssp             CCCEECC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             CceEEec--CchHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence            9999995  89999999999999999999999999996

>3uhj_A Probable glycerol dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.34A {Sinorhizobium meliloti}

Probab=97.39  E-value=0.0003  Score=63.53  Aligned_cols=88  Identities=11%  Similarity=0.123  Sum_probs=71.1

Q ss_pred             CeEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcC-chhhhhhhccCC
Q 028883           59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEA-HLSGVAAANSQI  137 (202)
Q Consensus        59 ~~V~IimGS~SD~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa-~LpgvvA~~T~~  137 (202)
                      .++.||++...-....++..+.|++ |+.+.+.....+-+.+.+.+..+.+.+.++++||++-|++. -++..+|....+
T Consensus        53 ~r~liVtd~~~~~~~~~~v~~~L~~-g~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavGGGs~~D~AK~iA~~~~~  131 (387)
T 3uhj_A           53 KRALVLIDRVLFDALSERIGKSCGD-SLDIRFERFGGECCTSEIERVRKVAIEHGSDILVGVGGGKTADTAKIVAIDTGA  131 (387)
T ss_dssp             SEEEEEECTTTHHHHHHHC-------CCEEEEEECCSSCSHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHTTC
T ss_pred             CEEEEEECchHHHHHHHHHHHHHHc-CCCeEEEEcCCCCCHHHHHHHHHHHhhcCCCEEEEeCCcHHHHHHHHHHHhcCC
Confidence            5899999998876788899999999 99886566778888899999999998888999999999964 589999999999


Q ss_pred             cEEEecCCCC
Q 028883          138 LVIRVPLLSE  147 (202)
Q Consensus       138 PVIgVP~~~~  147 (202)
                      |+|.||+..+
T Consensus       132 p~i~IPTTag  141 (387)
T 3uhj_A          132 RIVIAPTIAS  141 (387)
T ss_dssp             EEEECCSSCC
T ss_pred             CEEEecCccc
Confidence            9999999743

>1jq5_A Glycerol dehydrogenase; oxidoreductase, NAD, glycerol metabolism; HET: NAD; 1.70A {Geobacillus stearothermophilus} SCOP: e.22.1.2 PDB: 1jpu_A* 1jqa_A*

Probab=97.28  E-value=0.00034  Score=61.82  Aligned_cols=88  Identities=14%  Similarity=0.060  Sum_probs=73.6

Q ss_pred             CeEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCc-CchhhhhhhccCC
Q 028883           59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVE-AHLSGVAAANSQI  137 (202)
Q Consensus        59 ~~V~IimGS~SD~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~a-a~LpgvvA~~T~~  137 (202)
                      .+|.||++..+.....++..+.|++-|+++.+.+.+-+-+.+.+.+..+.+.+.++++||++-|++ .-+++.+|....+
T Consensus        32 ~~~livtd~~~~~~~~~~v~~~L~~~g~~~~~~~~~ge~~~~~v~~~~~~~~~~~~d~IIavGGGsv~D~aK~iA~~~~~  111 (370)
T 1jq5_A           32 NKTVVIADEIVWKIAGHTIVNELKKGNIAAEEVVFSGEASRNEVERIANIARKAEAAIVIGVGGGKTLDTAKAVADELDA  111 (370)
T ss_dssp             SEEEEEECHHHHHHTHHHHHHHHHTTTCEEEEEECCSSCBHHHHHHHHHHHHHTTCSEEEEEESHHHHHHHHHHHHHHTC
T ss_pred             CeEEEEEChHHHHHHHHHHHHHHHHcCCeEEEEeeCCCCCHHHHHHHHHHHHhcCCCEEEEeCChHHHHHHHHHHHhcCC
Confidence            589999988776667888999999999987655555666667888888888888899999998874 6699999999999


Q ss_pred             cEEEecCCC
Q 028883          138 LVIRVPLLS  146 (202)
Q Consensus       138 PVIgVP~~~  146 (202)
                      |+|.||+..
T Consensus       112 p~i~IPTTa  120 (370)
T 1jq5_A          112 YIVIVPTAA  120 (370)
T ss_dssp             EEEEEESSC
T ss_pred             CEEEecccc
Confidence            999999974

>3ce9_A Glycerol dehydrogenase; NP_348253.1, 3-dehydroquinate syntha structural genomics, joint center for structural genomics; HET: MSE; 2.37A {Clostridium acetobutylicum atcc 824}

Probab=97.04  E-value=0.0011  Score=58.23  Aligned_cols=88  Identities=10%  Similarity=0.004  Sum_probs=73.1

Q ss_pred             CeEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCC-cCchhhhhhhccCC
Q 028883           59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGV-EAHLSGVAAANSQI  137 (202)
Q Consensus        59 ~~V~IimGS~SD~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~-aa~LpgvvA~~T~~  137 (202)
                      .++.||++........++..+.|++-|+++.+..-..+-+.+.+.+. +.+.+.++++||++-|+ ..-+++.+|....+
T Consensus        35 ~~~livtd~~~~~~~~~~v~~~L~~~g~~~~~~~~~~~~~~~~v~~~-~~~~~~~~d~IIavGGGsv~D~aK~vA~~~~~  113 (354)
T 3ce9_A           35 KRVSLYFGEGIYELFGETIEKSIKSSNIEIEAVETVKNIDFDEIGTN-AFKIPAEVDALIGIGGGKAIDAVKYMAFLRKL  113 (354)
T ss_dssp             SEEEEEEETTHHHHHHHHHHHHHHTTTCEEEEEEEECCCBHHHHHHH-HTTSCTTCCEEEEEESHHHHHHHHHHHHHHTC
T ss_pred             CeEEEEECccHHHHHHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH-HHhhhcCCCEEEEECChHHHHHHHHHHhhcCC
Confidence            38999999887767889999999999998765442466788888888 87877788999999887 45699999999999


Q ss_pred             cEEEecCCCC
Q 028883          138 LVIRVPLLSE  147 (202)
Q Consensus       138 PVIgVP~~~~  147 (202)
                      |+|.||+..+
T Consensus       114 p~i~IPTT~~  123 (354)
T 3ce9_A          114 PFISVPTSTS  123 (354)
T ss_dssp             CEEEEESCCS
T ss_pred             CEEEecCccc
Confidence            9999999764

>3bfj_A 1,3-propanediol oxidoreductase; opportunistic pathogens, decamer, structural genomics,struct proteomics in europe, spine; 2.70A {Klebsiella pneumoniae}

Probab=97.00  E-value=0.0016  Score=57.97  Aligned_cols=89  Identities=10%  Similarity=0.073  Sum_probs=71.9

Q ss_pred             CeEEEEecCCCCHH---HHHHHHHHHHHhCCCeEE-EEEccCCCchHHHHHHHHHhhcCceEEEEecCCc-Cchhhhhhh
Q 028883           59 PIVGIIMESDLDLP---VMNDAARTLSDFGVPYEI-KILPPHQNCKEALSYALSAKERGIKIIIVGDGVE-AHLSGVAAA  133 (202)
Q Consensus        59 ~~V~IimGS~SD~~---v~~~a~~~L~~~gi~~ev-~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~a-a~LpgvvA~  133 (202)
                      .+|.||++...-..   ..++..+.|++-|+.+.+ .-...+.+.+.+.+.++.+.+.++++||++-|++ --+++.+|.
T Consensus        34 ~~~livtd~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavGGGsv~D~aK~iA~  113 (387)
T 3bfj_A           34 KKALLVTDKGLRAIKDGAVDKTLHYLREAGIEVAIFDGVEPNPKDTNVRDGLAVFRREQCDIIVTVGGGSPHDCGKGIGI  113 (387)
T ss_dssp             SEEEEECCTTTC--CCSSHHHHHHHHHHTTCEEEEECCCCSSCBHHHHHHHHHHHHHTTCCEEEEEESHHHHHHHHHHHH
T ss_pred             CEEEEEECcchhhccchHHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHhcCCCEEEEeCCcchhhHHHHHHH
Confidence            48999998877655   899999999999987632 2235788999999999999999999999998874 558888887


Q ss_pred             c------------------cCCcEEEecCCCC
Q 028883          134 N------------------SQILVIRVPLLSE  147 (202)
Q Consensus       134 ~------------------T~~PVIgVP~~~~  147 (202)
                      .                  ..+|+|.||+..+
T Consensus       114 ~~~~~~~~~d~~~~~~~~~~~~p~i~IPTT~g  145 (387)
T 3bfj_A          114 AATHEGDLYQYAGIETLTNPLPPIVAVNTTAG  145 (387)
T ss_dssp             HHHSSSCSGGGCBSSCCCSCCCCEEEEECSTT
T ss_pred             HHhCCCCHHHHhcccccCCCCCCEEEEeCCCC
Confidence            5                  5789999999753

>1o2d_A Alcohol dehydrogenase, iron-containing; TM0920, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE NAP TRS; 1.30A {Thermotoga maritima} SCOP: e.22.1.2 PDB: 1vhd_A*

Probab=96.96  E-value=0.0028  Score=56.36  Aligned_cols=89  Identities=10%  Similarity=0.166  Sum_probs=72.0

Q ss_pred             CeEEEEecCCCCH--HHHHHHHHHHHHhCCCeEE-EEEccCCCchHHHHHHHHHhhcCceEEEEecCCc-Cchhhhhhhc
Q 028883           59 PIVGIIMESDLDL--PVMNDAARTLSDFGVPYEI-KILPPHQNCKEALSYALSAKERGIKIIIVGDGVE-AHLSGVAAAN  134 (202)
Q Consensus        59 ~~V~IimGS~SD~--~v~~~a~~~L~~~gi~~ev-~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~a-a~LpgvvA~~  134 (202)
                      .++.||++..+-.  ...++..+.|++-|+.+.+ .=...+.+.+.+.+..+.+.+.++++||++-|++ --+++++|..
T Consensus        41 ~~~liVtd~~~~~~~g~~~~v~~~L~~~g~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavGGGsv~D~AK~iA~~  120 (371)
T 1o2d_A           41 KRALVVTGKSSSKKNGSLDDLKKLLDETEISYEIFDEVEENPSFDNVMKAVERYRNDSFDFVVGLGGGSPMDFAKAVAVL  120 (371)
T ss_dssp             SEEEEEEESSGGGTSSHHHHHHHHHHHTTCEEEEEEEECSSCBHHHHHHHHHHHTTSCCSEEEEEESHHHHHHHHHHHHH
T ss_pred             CEEEEEECchHHhhccHHHHHHHHHHHcCCeEEEeCCccCCCCHHHHHHHHHHHHhcCCCEEEEeCChHHHHHHHHHHHH
Confidence            4899999885533  3789999999999987643 2245889999999999999888899999998874 5588888886


Q ss_pred             ------------------cCCcEEEecCCCC
Q 028883          135 ------------------SQILVIRVPLLSE  147 (202)
Q Consensus       135 ------------------T~~PVIgVP~~~~  147 (202)
                                        ..+|+|.||+..+
T Consensus       121 ~~~~~~~~~~~~~~~~~~~~~p~i~IPTTag  151 (371)
T 1o2d_A          121 LKEKDLSVEDLYDREKVKHWLPVVEIPTTAG  151 (371)
T ss_dssp             TTSTTCCSGGGGCGGGCCCCCCEEEEECSSC
T ss_pred             HhCCCCCHHHHhcccCCCCCCeEEEEeCCCc
Confidence                              5789999999854

>1ta9_A Glycerol dehydrogenase; oxidoredu; 1.90A {Schizosaccharomyces pombe}

Probab=96.82  E-value=0.0013  Score=60.61  Aligned_cols=86  Identities=13%  Similarity=0.082  Sum_probs=72.0

Q ss_pred             eEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCc-CchhhhhhhccCCc
Q 028883           60 IVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVE-AHLSGVAAANSQIL  138 (202)
Q Consensus        60 ~V~IimGS~SD~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~a-a~LpgvvA~~T~~P  138 (202)
                      +|.||++..+.....++..+.|++-|+.+.+.+.+-+-+-+.+.+..+.+.+ ++++||++.|++ .-+++.+|....+|
T Consensus        93 rvlIVtd~~~~~~~~~~v~~~L~~~gi~~~~~~~~ge~~~~~v~~~~~~~~~-~~D~IIAvGGGSviD~AK~iA~~~giP  171 (450)
T 1ta9_A           93 SAVVLADQNVWNICANKIVDSLSQNGMTVTKLVFGGEASLVELDKLRKQCPD-DTQVIIGVGGGKTMDSAKYIAHSMNLP  171 (450)
T ss_dssp             EEEEEEEHHHHHHTHHHHHHHHHHTTCEEEEEEECSCCCHHHHHHHHTTSCT-TCCEEEEEESHHHHHHHHHHHHHTTCC
T ss_pred             EEEEEECccHHHHHHHHHHHHHHHCCCeEEEEeeCCCCCHHHHHHHHHHHhh-CCCEEEEeCCcHHHHHHHHHHHhcCCC
Confidence            8999998877666788999999999998765566666666778888877777 899999998874 56999999999999


Q ss_pred             EEEecCCC
Q 028883          139 VIRVPLLS  146 (202)
Q Consensus       139 VIgVP~~~  146 (202)
                      +|.||+..
T Consensus       172 ~I~IPTTA  179 (450)
T 1ta9_A          172 SIICPTTA  179 (450)
T ss_dssp             EEEEESSC
T ss_pred             EEEEeCCC
Confidence            99999974

>3ox4_A Alcohol dehydrogenase 2; iron, NAD, oxidoreductase; HET: NAD; 2.00A {Zymomonas mobilis} PDB: 3owo_A*

Probab=96.80  E-value=0.0017  Score=58.10  Aligned_cols=89  Identities=12%  Similarity=0.116  Sum_probs=71.6

Q ss_pred             CeEEEEecCCCCH-HHHHHHHHHHHHhCCCeEE-EEEccCCCchHHHHHHHHHhhcCceEEEEecCCcC-chhhhhhhcc
Q 028883           59 PIVGIIMESDLDL-PVMNDAARTLSDFGVPYEI-KILPPHQNCKEALSYALSAKERGIKIIIVGDGVEA-HLSGVAAANS  135 (202)
Q Consensus        59 ~~V~IimGS~SD~-~v~~~a~~~L~~~gi~~ev-~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa-~LpgvvA~~T  135 (202)
                      .+|.||++....- ...++..+.|++-|+.+.+ .-...+.+.+.+.+.++.+.+.++++||++-|++. -++..+|...
T Consensus        32 ~~~liVtd~~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGGsv~D~aK~ia~~~  111 (383)
T 3ox4_A           32 KNALIVSDAFMNKSGVVKQVADLLKAQGINSAVYDGVMPNPTVTAVLEGLKILKDNNSDFVISLGGGSPHDCAKAIALVA  111 (383)
T ss_dssp             CEEEEEEEHHHHHTTHHHHHHHHHHTTTCEEEEEEEECSSCBHHHHHHHHHHHHHHTCSEEEEEESHHHHHHHHHHHHHH
T ss_pred             CEEEEEECCchhhCchHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHhcCcCEEEEeCCcHHHHHHHHHHHHH
Confidence            4799999864322 2578888999999998743 34568999999999999998889999999999964 4788888766


Q ss_pred             ------------------CCcEEEecCCCC
Q 028883          136 ------------------QILVIRVPLLSE  147 (202)
Q Consensus       136 ------------------~~PVIgVP~~~~  147 (202)
                                        .+|+|.||+..+
T Consensus       112 ~~~~~~~d~~~~~~~~~~~~p~i~IPTTag  141 (383)
T 3ox4_A          112 TNGGEVKDYEGIDKSKKPALPLMSINTTAG  141 (383)
T ss_dssp             HSCSSGGGGCEESCCSSCCSCEEEEECSSS
T ss_pred             hCCCCHHHHhcccccccCCCCEEEEeCCCC
Confidence                              899999999753

>3okf_A 3-dehydroquinate synthase; structural genomics, center for structural genomics of infec diseases, csgid, NAD, lyase; HET: NAD; 2.50A {Vibrio cholerae o1 biovar eltor}

Probab=96.76  E-value=0.0049  Score=56.15  Aligned_cols=88  Identities=18%  Similarity=0.151  Sum_probs=74.7

Q ss_pred             CCeEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEc---cCCCchHHHHHHHHHhhcCc---eEEEEecCC-cCchhhh
Q 028883           58 APIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILP---PHQNCKEALSYALSAKERGI---KIIIVGDGV-EAHLSGV  130 (202)
Q Consensus        58 ~~~V~IimGS~SD~~v~~~a~~~L~~~gi~~ev~V~S---aHRtp~~l~~~~~~~~~~g~---~ViIa~AG~-aa~Lpgv  130 (202)
                      ..+|.||++....--+.++..+.|++.|+++++.+..   .+++.+.+.+..+.+.+.++   ++||++.|+ ..-++++
T Consensus        62 ~~rvlIVtd~~v~~~~~~~v~~~L~~~g~~~~~~~~~~gE~~kt~~~v~~~~~~l~~~~~~R~d~IIAvGGGsv~D~ak~  141 (390)
T 3okf_A           62 KQKVVIVTNHTVAPLYAPAIISLLDHIGCQHALLELPDGEQYKTLETFNTVMSFLLEHNYSRDVVVIALGGGVIGDLVGF  141 (390)
T ss_dssp             TCEEEEEEETTTHHHHHHHHHHHHHHHTCEEEEEEECSSGGGCBHHHHHHHHHHHHHTTCCTTCEEEEEESHHHHHHHHH
T ss_pred             CCEEEEEECCcHHHHHHHHHHHHHHHcCCeEEEEEECCCcCCchHHHHHHHHHHHHhcCCCcCcEEEEECCcHHhhHHHH
Confidence            3589999999988779999999999999988866554   57889999999998888777   699998888 5568999


Q ss_pred             hhh--ccCCcEEEecCC
Q 028883          131 AAA--NSQILVIRVPLL  145 (202)
Q Consensus       131 vA~--~T~~PVIgVP~~  145 (202)
                      +|+  +...|+|.||+.
T Consensus       142 ~Aa~~~rgip~I~IPTT  158 (390)
T 3okf_A          142 AAACYQRGVDFIQIPTT  158 (390)
T ss_dssp             HHHHBTTCCEEEEEECS
T ss_pred             HHHHhcCCCCEEEeCCC
Confidence            984  578999999997

>1sg6_A Pentafunctional AROM polypeptide; shikimate pathway, aromatic amino acid biosynthesis, DHQS, O form J, domain movement, cyclase, lyase; HET: NAD; 1.70A {Emericella nidulans} SCOP: e.22.1.1 PDB: 1nr5_A* 1nrx_A* 1nua_A 1nva_A* 1nvb_A* 1nvd_A* 1nve_A* 1nvf_A* 1dqs_A*

Probab=96.70  E-value=0.0036  Score=56.24  Aligned_cols=87  Identities=11%  Similarity=0.121  Sum_probs=71.2

Q ss_pred             CeEEEEecCCCCHHHHHHHHHHHHHh------CCCeEEEEEcc---CCCchHHHHHHHHHhhcC--c---eEEEEecCC-
Q 028883           59 PIVGIIMESDLDLPVMNDAARTLSDF------GVPYEIKILPP---HQNCKEALSYALSAKERG--I---KIIIVGDGV-  123 (202)
Q Consensus        59 ~~V~IimGS~SD~~v~~~a~~~L~~~------gi~~ev~V~Sa---HRtp~~l~~~~~~~~~~g--~---~ViIa~AG~-  123 (202)
                      .++.||++.....-+.++..+.|++.      |+.+...+...   +++.+.+.+..+.+.+.+  +   ++||++-|+ 
T Consensus        37 ~k~liVtd~~v~~~~~~~v~~~L~~~~~~~~~g~~~~~~~~~~gE~~k~~~~v~~~~~~~~~~~~~~~r~d~iIalGGGs  116 (393)
T 1sg6_A           37 TTYVLVTDTNIGSIYTPSFEEAFRKRAAEITPSPRLLIYNRPPGEVSKSRQTKADIEDWMLSQNPPCGRDTVVIALGGGV  116 (393)
T ss_dssp             SEEEEEEEHHHHHHHHHHHHHHHHHHHHHSSSCCEEEEEEECSSGGGSSHHHHHHHHHHHHTSSSCCCTTCEEEEEESHH
T ss_pred             CeEEEEECCcHHHHHHHHHHHHHHhhhccccCCceeEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCCCCEEEEECCcH
Confidence            47999998765544788888888877      77766555555   888999999999998888  8   999999887 


Q ss_pred             cCchhhhhhh--ccCCcEEEecCC
Q 028883          124 EAHLSGVAAA--NSQILVIRVPLL  145 (202)
Q Consensus       124 aa~LpgvvA~--~T~~PVIgVP~~  145 (202)
                      ..-+++++|+  +..+|+|.||+.
T Consensus       117 v~D~ak~~Aa~~~rgip~i~IPTT  140 (393)
T 1sg6_A          117 IGDLTGFVASTYMRGVRYVQVPTT  140 (393)
T ss_dssp             HHHHHHHHHHHGGGCCEEEEEECS
T ss_pred             HHHHHHHHHHHhcCCCCEEEECCc
Confidence            5679999995  578999999995

>3hl0_A Maleylacetate reductase; structur genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE NAD EPE; 1.60A {Agrobacterium tumefaciens str}

Probab=96.69  E-value=0.0016  Score=58.02  Aligned_cols=86  Identities=10%  Similarity=0.051  Sum_probs=67.6

Q ss_pred             CeEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCc-hhhhhhhccCC
Q 028883           59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAH-LSGVAAANSQI  137 (202)
Q Consensus        59 ~~V~IimGS~SD~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~-LpgvvA~~T~~  137 (202)
                      .+|.||++... ....++..+.|++.++.+ +.-...+.+.+.+.+.++.+.+.++++||++-|++.. ++..+|....+
T Consensus        35 ~r~liVtd~~~-~~~~~~v~~~L~~~~~~v-~~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGGs~iD~aK~iA~~~~~  112 (353)
T 3hl0_A           35 SRALVLSTPQQ-KGDAEALASRLGRLAAGV-FSEAAMHTPVEVTKTAVEAYRAAGADCVVSLGGGSTTGLGKAIALRTDA  112 (353)
T ss_dssp             CCEEEECCGGG-HHHHHHHHHHHGGGEEEE-ECCCCTTCBHHHHHHHHHHHHHTTCSEEEEEESHHHHHHHHHHHHHHCC
T ss_pred             CEEEEEecCch-hhHHHHHHHHHhhCCcEE-ecCcCCCCcHHHHHHHHHHHhccCCCEEEEeCCcHHHHHHHHHHhccCC
Confidence            47999998764 567888888888754321 1112356777889999988888899999999999654 89999999999


Q ss_pred             cEEEecCCC
Q 028883          138 LVIRVPLLS  146 (202)
Q Consensus       138 PVIgVP~~~  146 (202)
                      |+|.||+..
T Consensus       113 p~i~IPTTa  121 (353)
T 3hl0_A          113 AQIVIPTTY  121 (353)
T ss_dssp             EEEEEECSS
T ss_pred             CEEEEeCCc
Confidence            999999975

>1rrm_A Lactaldehyde reductase; structural genomics, dehydrogenase, PSI, protein structure initiative; HET: APR; 1.60A {Escherichia coli} SCOP: e.22.1.2 PDB: 2bi4_A* 2bl4_A*

Probab=96.64  E-value=0.0021  Score=57.08  Aligned_cols=88  Identities=13%  Similarity=0.142  Sum_probs=70.2

Q ss_pred             CeEEEEecCCCCH-HHHHHHHHHHHHhCCCeEE-EEEccCCCchHHHHHHHHHhhcCceEEEEecCCc-Cchhhhhhhcc
Q 028883           59 PIVGIIMESDLDL-PVMNDAARTLSDFGVPYEI-KILPPHQNCKEALSYALSAKERGIKIIIVGDGVE-AHLSGVAAANS  135 (202)
Q Consensus        59 ~~V~IimGS~SD~-~v~~~a~~~L~~~gi~~ev-~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~a-a~LpgvvA~~T  135 (202)
                      .+|.||++..... ...++..+.|++-|+.+.+ .-...+.+.+.+.+.++.+.+.++++||++-|++ --+++++|...
T Consensus        32 ~~~livtd~~~~~~g~~~~v~~~L~~~g~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavGGGsv~D~aK~iA~~~  111 (386)
T 1rrm_A           32 QKALIVTDKTLVQCGVVAKVTDKMDAAGLAWAIYDGVVPNPTITVVKEGLGVFQNSGADYLIAIGGGSPQDTCKAIGIIS  111 (386)
T ss_dssp             CEEEEECBHHHHHTTHHHHHHHHHHHTTCEEEEECBCCSSCBHHHHHHHHHHHHHHTCSEEEEEESHHHHHHHHHHHHHH
T ss_pred             CEEEEEECcchhhchHHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHhcCcCEEEEeCChHHHHHHHHHHHHH
Confidence            4799999865532 3788899999998987642 2245788899999999999888999999998874 45888888755


Q ss_pred             --------------------CCcEEEecCCC
Q 028883          136 --------------------QILVIRVPLLS  146 (202)
Q Consensus       136 --------------------~~PVIgVP~~~  146 (202)
                                          .+|+|.||+..
T Consensus       112 ~~~~~~~~~d~~~~~~~~~~~~p~i~IPTT~  142 (386)
T 1rrm_A          112 NNPEFADVRSLEGLSPTNKPSVPILAIPTTA  142 (386)
T ss_dssp             HCGGGTTSGGGSEECCCCSCCSCEEEEECSS
T ss_pred             hCCCCCCHHHHhcccccCCCCCCEEEEeCCC
Confidence                                78999999975

>3jzd_A Iron-containing alcohol dehydrogenase; YP_298327.1, putative alcohol dehedrogenase, structural GENO joint center for structural genomics; HET: MSE NAD PG4 P6G PGE; 2.10A {Ralstonia eutropha}

Probab=96.50  E-value=0.0026  Score=56.79  Aligned_cols=86  Identities=13%  Similarity=0.084  Sum_probs=66.9

Q ss_pred             CeEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcC-chhhhhhhccCC
Q 028883           59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEA-HLSGVAAANSQI  137 (202)
Q Consensus        59 ~~V~IimGS~SD~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa-~LpgvvA~~T~~  137 (202)
                      .+|.||++... ....++..+.|++.++. .+.-...|.+.+.+.+.++.+.+.++++||++-|++. -++..+|....+
T Consensus        37 ~r~liVtd~~~-~~~~~~v~~~L~~~~~~-~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGGsviD~aK~iA~~~~~  114 (358)
T 3jzd_A           37 KRALVLCTPNQ-QAEAERIADLLGPLSAG-VYAGAVMHVPIESARDATARAREAGADCAVAVGGGSTTGLGKAIALETGM  114 (358)
T ss_dssp             SCEEEECCGGG-HHHHHHHHHHHGGGEEE-EECCCCTTCBHHHHHHHHHHHHHHTCSEEEEEESHHHHHHHHHHHHHHCC
T ss_pred             CeEEEEeCCcH-HHHHHHHHHHhccCCEE-EecCCcCCCCHHHHHHHHHHhhccCCCEEEEeCCcHHHHHHHHHHhccCC
Confidence            37999998865 56677888888765321 1112335677888888888888888999999999965 489999999999


Q ss_pred             cEEEecCCC
Q 028883          138 LVIRVPLLS  146 (202)
Q Consensus       138 PVIgVP~~~  146 (202)
                      |+|.||+..
T Consensus       115 p~i~IPTT~  123 (358)
T 3jzd_A          115 PIVAIPTTY  123 (358)
T ss_dssp             CEEEEECSS
T ss_pred             CEEEEeCCc
Confidence            999999975

>1vlj_A NADH-dependent butanol dehydrogenase; TM0820, structural G JCSG, protein structure initiative, PSI, joint center for S genomics; HET: NAP; 1.78A {Thermotoga maritima} SCOP: e.22.1.2

Probab=96.47  E-value=0.0094  Score=53.56  Aligned_cols=87  Identities=14%  Similarity=0.143  Sum_probs=69.1

Q ss_pred             CeEEEEecCCCCH--HHHHHHHHHHHHhCCCeEEEEEc---cCCCchHHHHHHHHHhhcCceEEEEecCCc-Cchhhhhh
Q 028883           59 PIVGIIMESDLDL--PVMNDAARTLSDFGVPYEIKILP---PHQNCKEALSYALSAKERGIKIIIVGDGVE-AHLSGVAA  132 (202)
Q Consensus        59 ~~V~IimGS~SD~--~v~~~a~~~L~~~gi~~ev~V~S---aHRtp~~l~~~~~~~~~~g~~ViIa~AG~a-a~LpgvvA  132 (202)
                      .+|.||++..+=.  ...++..+.|++-|+.+.  +.+   .+.+.+.+.+.++.+.+.++++||++-|++ --++..+|
T Consensus        44 ~r~liVtd~~~~~~~g~~~~v~~~L~~~g~~~~--~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGGsviD~AK~iA  121 (407)
T 1vlj_A           44 RKVLFLYGGGSIKKNGVYDQVVDSLKKHGIEWV--EVSGVKPNPVLSKVHEAVEVAKKEKVEAVLGVGGGSVVDSAKAVA  121 (407)
T ss_dssp             CEEEEEECSSHHHHSSHHHHHHHHHHHTTCEEE--EECCCCSSCBHHHHHHHHHHHHHTTCSEEEEEESHHHHHHHHHHH
T ss_pred             CeEEEEECchHHhhccHHHHHHHHHHHcCCeEE--EecCccCCCCHHHHHHHHHHHHhcCCCEEEEeCChhHHHHHHHHH
Confidence            4899999854322  378999999999898764  333   478889999999999888999999998875 45888888


Q ss_pred             hc------------------cCCcEEEecCCCC
Q 028883          133 AN------------------SQILVIRVPLLSE  147 (202)
Q Consensus       133 ~~------------------T~~PVIgVP~~~~  147 (202)
                      ..                  ..+|+|.||+..+
T Consensus       122 ~~~~~~~~~~d~~~~~~~~~~~~p~i~IPTTag  154 (407)
T 1vlj_A          122 AGALYEGDIWDAFIGKYQIEKALPIFDVLTISA  154 (407)
T ss_dssp             HHTTCSSCGGGGGGTSCCCCCCCCEEEEECSCS
T ss_pred             HHHhCCCCHHHHhcccccCCCCCCEEEEeCCCC
Confidence            75                  4789999999753

>2gru_A 2-deoxy-scyllo-inosose synthase; aminoglycoside, 2-deoxystreptamine, dehydroquinate synthase, lyase; HET: NAD EXO CAK; 2.15A {Bacillus circulans} PDB: 2d2x_A*

Probab=96.12  E-value=0.024  Score=50.35  Aligned_cols=86  Identities=21%  Similarity=0.216  Sum_probs=69.4

Q ss_pred             CeEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEc---cCCCchHHHHHHHHHhhcC---ceEEEEecCC-cCchhhhh
Q 028883           59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILP---PHQNCKEALSYALSAKERG---IKIIIVGDGV-EAHLSGVA  131 (202)
Q Consensus        59 ~~V~IimGS~SD~~v~~~a~~~L~~~gi~~ev~V~S---aHRtp~~l~~~~~~~~~~g---~~ViIa~AG~-aa~Lpgvv  131 (202)
                      .+|.||++....-.+.++..+.|++- +.++..+..   .|++.+.+.+..+.+.+.+   .++||++-|+ ..-+++++
T Consensus        35 ~k~liVtd~~v~~~~~~~v~~~L~~~-~~~~~~~~~~ge~~k~~~~v~~~~~~~~~~~~~r~d~iIalGGGsv~D~ak~~  113 (368)
T 2gru_A           35 DQYIMISDSGVPDSIVHYAAEYFGKL-APVHILRFQGGEEYKTLSTVTNLQERAIALGANRRTAIVAVGGGLTGNVAGVA  113 (368)
T ss_dssp             SEEEEEEETTSCHHHHHHHHHHHTTT-SCEEEEEECCSGGGCSHHHHHHHHHHHHHTTCCTTEEEEEEESHHHHHHHHHH
T ss_pred             CEEEEEECCcHHHHHHHHHHHHHHhc-cceeEEEeCCCCCCCCHHHHHHHHHHHHhcCCCCCcEEEEECChHHHHHHHHH
Confidence            58999999988877888888888776 666655543   6788888988888877766   5999998876 66799999


Q ss_pred             hh--ccCCcEEEecCC
Q 028883          132 AA--NSQILVIRVPLL  145 (202)
Q Consensus       132 A~--~T~~PVIgVP~~  145 (202)
                      |+  +...|+|.||+.
T Consensus       114 Aa~~~rgip~i~IPTT  129 (368)
T 2gru_A          114 AGMMFRGIALIHVPTT  129 (368)
T ss_dssp             HHHBTTCCEEEEEECS
T ss_pred             HHHhcCCCCEEEECCc
Confidence            96  457999999994

>1oj7_A Hypothetical oxidoreductase YQHD; structural genomics; HET: NZQ; 2.0A {Escherichia coli} SCOP: e.22.1.2

Probab=95.99  E-value=0.011  Score=52.93  Aligned_cols=85  Identities=16%  Similarity=0.122  Sum_probs=65.0

Q ss_pred             CeEEEEecCCCCHH--HHHHHHHHHHHhCCCeEEEEEc---cCCCchHHHHHHHHHhhcCceEEEEecCCc-Cchhhhhh
Q 028883           59 PIVGIIMESDLDLP--VMNDAARTLSDFGVPYEIKILP---PHQNCKEALSYALSAKERGIKIIIVGDGVE-AHLSGVAA  132 (202)
Q Consensus        59 ~~V~IimGS~SD~~--v~~~a~~~L~~~gi~~ev~V~S---aHRtp~~l~~~~~~~~~~g~~ViIa~AG~a-a~LpgvvA  132 (202)
                      .+|.||++..+-..  ..++..+.|+  |+++  .+.+   .+.+.+.+.+.++.+.+.++++||++-|++ --+++.+|
T Consensus        51 ~r~liVtd~~~~~~~g~~~~v~~~L~--g~~~--~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGGsviD~AK~iA  126 (408)
T 1oj7_A           51 ARVLITYGGGSVKKTGVLDQVLDALK--GMDV--LEFGGIEPNPAYETLMNAVKLVREQKVTFLLAVGGGSVLDGTKFIA  126 (408)
T ss_dssp             CEEEEEECSSHHHHHSHHHHHHHHTT--TSEE--EEECCCCSSCBHHHHHHHHHHHHHHTCCEEEEEESHHHHHHHHHHH
T ss_pred             CEEEEEECCchhhhccHHHHHHHHhC--CCEE--EEeCCcCCCcCHHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHH
Confidence            58999998764333  6777777776  7654  3433   578889999999999888999999998874 45888888


Q ss_pred             hc---------------------cCCcEEEecCCCC
Q 028883          133 AN---------------------SQILVIRVPLLSE  147 (202)
Q Consensus       133 ~~---------------------T~~PVIgVP~~~~  147 (202)
                      ..                     ..+|+|.||+..+
T Consensus       127 ~~~~~~~~~~~~d~~~~~~~~~~~~~p~i~IPTTag  162 (408)
T 1oj7_A          127 AAANYPENIDPWHILQTGGKEIKSAIPMGCVLTLPA  162 (408)
T ss_dssp             HHTTSCTTSCTTHHHHTTTTTCCCCCCEEEEESSCS
T ss_pred             HHHhCCCCCCHHHHhccccCcCCCCCCEEEEeCCCc
Confidence            74                     4589999999753

>3qbe_A 3-dehydroquinate synthase; shikimate pathway, mycobacte tuberculosis, nicotinamide adenine dinucleotide (NAD)-depen enzyme; 2.07A {Mycobacterium tuberculosis} PDB: 3qbd_A

Probab=95.94  E-value=0.018  Score=51.97  Aligned_cols=86  Identities=15%  Similarity=0.160  Sum_probs=69.6

Q ss_pred             CeEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEc---cCCCchHHHHHHHHHhhcC---ceEEEEecCC-cCchhhhh
Q 028883           59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILP---PHQNCKEALSYALSAKERG---IKIIIVGDGV-EAHLSGVA  131 (202)
Q Consensus        59 ~~V~IimGS~SD~~v~~~a~~~L~~~gi~~ev~V~S---aHRtp~~l~~~~~~~~~~g---~~ViIa~AG~-aa~Lpgvv  131 (202)
                      .+|.||++..... ..++..+.|++-|+++++.+..   .+++.+.+.+..+.+.+.+   .++||++.|+ ..-+++++
T Consensus        44 ~rvlIVtd~~v~~-~~~~v~~~L~~~g~~~~~~~~~~gE~~kt~~~v~~~~~~l~~~~~~r~d~IIavGGGsv~D~ak~~  122 (368)
T 3qbe_A           44 HKVAVVHQPGLAE-TAEEIRKRLAGKGVDAHRIEIPDAEAGKDLPVVGFIWEVLGRIGIGRKDALVSLGGGAATDVAGFA  122 (368)
T ss_dssp             SEEEEEECGGGHH-HHHHHHHHHHHTTCEEEEEECCSGGGGGBHHHHHHHHHHHHHHTCCTTCEEEEEESHHHHHHHHHH
T ss_pred             CEEEEEECccHHH-HHHHHHHHHHhcCCcceEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCcEEEEECChHHHHHHHHH
Confidence            5899999998754 5888999999999987766553   5778888888888776654   4899999888 45689999


Q ss_pred             hh--ccCCcEEEecCC
Q 028883          132 AA--NSQILVIRVPLL  145 (202)
Q Consensus       132 A~--~T~~PVIgVP~~  145 (202)
                      |+  +...|+|.||+.
T Consensus       123 Aa~~~rgip~i~IPTT  138 (368)
T 3qbe_A          123 AATWLRGVSIVHLPTT  138 (368)
T ss_dssp             HHHGGGCCEEEEEECS
T ss_pred             HHHhccCCcEEEECCC
Confidence            94  478999999996

>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1

Probab=95.91  E-value=0.16  Score=42.78  Aligned_cols=128  Identities=14%  Similarity=0.106  Sum_probs=85.2

Q ss_pred             eEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhh-cCceEEEEecCCcCchhhhhhhccCCc
Q 028883           60 IVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKE-RGIKIIIVGDGVEAHLSGVAAANSQIL  138 (202)
Q Consensus        60 ~V~IimGS~SD~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~-~g~~ViIa~AG~aa~LpgvvA~~T~~P  138 (202)
                      .+.++.+..   ...+.+.+++.+++...++.+..  ...++..+.+++... .|++|||+-.|.+.    .+-.+++.|
T Consensus        14 ~ii~i~~~~---~L~~~~~~i~~e~~~~~~I~vi~--~~le~av~~a~~~~~~~~~dVIISRGgta~----~Lr~~~~iP   84 (225)
T 2pju_A           14 PVIWTVSVT---RLFELFRDISLEFDHLANITPIQ--LGFEKAVTYIRKKLANERCDAIIAAGSNGA----YLKSRLSVP   84 (225)
T ss_dssp             CEEEEECCH---HHHHHHHHHHTTTTTTCEEEEEC--CCHHHHHHHHHHHTTTSCCSEEEEEHHHHH----HHHTTCSSC
T ss_pred             CEEEEEchH---HHHHHHHHHHHhhCCCceEEEec--CcHHHHHHHHHHHHhcCCCeEEEeCChHHH----HHHhhCCCC
Confidence            455555433   23335666677888777877754  235666666666544 46999998766555    445667899


Q ss_pred             EEEecCCCCCCChhhHHHhhcCCCCC--eeeEEecCChhhHHHHHHHHHccC--------CHHHHHHHHHHHh
Q 028883          139 VIRVPLLSEDWSEDDVINSIRMPSHV--QVASVPRNNAKNAALYAVKVLGIA--------DEDLLERIRKYVE  201 (202)
Q Consensus       139 VIgVP~~~~~l~G~DLlS~vqMP~Gv--pVatV~I~n~~NAAl~Aa~IL~~~--------d~~l~~kl~~~~~  201 (202)
                      ||-+|++     |.|++..|+.....  .+++|+-.|..+.+-.-.++|++.        .+++.+.+++.++
T Consensus        85 VV~I~vs-----~~Dil~aL~~a~~~~~kIavVg~~~~~~~~~~i~~ll~~~i~~~~~~~~ee~~~~i~~l~~  152 (225)
T 2pju_A           85 VILIKPS-----GYDVLQFLAKAGKLTSSIGVVTYQETIPALVAFQKTFNLRLDQRSYITEEDARGQINELKA  152 (225)
T ss_dssp             EEEECCC-----HHHHHHHHHHTTCTTSCEEEEEESSCCHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHHHH
T ss_pred             EEEecCC-----HHHHHHHHHHHHhhCCcEEEEeCchhhhHHHHHHHHhCCceEEEEeCCHHHHHHHHHHHHH
Confidence            9999864     57744444432222  589998889888888888899864        4577777776654

>1xah_A Sadhqs, 3-dehydroquinate synthase; shikimate pathway, aromatic amino acid biosynthesis, open form, form B, domain movement, cyclase; HET: NAD; 2.20A {Staphylococcus aureus} PDB: 1xag_A* 1xai_A* 1xaj_A* 1xal_A*

Probab=95.69  E-value=0.012  Score=51.76  Aligned_cols=86  Identities=15%  Similarity=0.158  Sum_probs=63.0

Q ss_pred             CeEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEc---cCCCchHHHHHHHHHhhcCc---eEEEEecCC-cCchhhhh
Q 028883           59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILP---PHQNCKEALSYALSAKERGI---KIIIVGDGV-EAHLSGVA  131 (202)
Q Consensus        59 ~~V~IimGS~SD~~v~~~a~~~L~~~gi~~ev~V~S---aHRtp~~l~~~~~~~~~~g~---~ViIa~AG~-aa~Lpgvv  131 (202)
                      .+|.||++....-...++..+.| +-| .+++.+..   .+.+.+.+.+..+.+.+.++   ++||++-|+ ..-+++++
T Consensus        32 ~~~liVtd~~~~~~~~~~v~~~L-~~g-~~~~~~~~~~e~~p~~~~v~~~~~~~~~~~~~r~d~iIavGGGsv~D~ak~v  109 (354)
T 1xah_A           32 DQSFLLIDEYVNQYFANKFDDIL-SYE-NVHKVIIPAGEKTKTFEQYQETLEYILSHHVTRNTAIIAVGGGATGDFAGFV  109 (354)
T ss_dssp             SCEEEEEEHHHHHHHHHHHC--------CEEEEEECSGGGGCSHHHHHHHHHHHHTTCCCTTCEEEEEESHHHHHHHHHH
T ss_pred             CeEEEEECCcHHHHHHHHHHHHH-hcC-CeEEEEECCCCCCCCHHHHHHHHHHHHHcCCCCCceEEEECChHHHHHHHHH
Confidence            47999987654444667777777 667 66655553   57899999999999988888   899999887 55699999


Q ss_pred             hh--ccCCcEEEecCCC
Q 028883          132 AA--NSQILVIRVPLLS  146 (202)
Q Consensus       132 A~--~T~~PVIgVP~~~  146 (202)
                      |+  ...+|+|.||+..
T Consensus       110 A~~~~rgip~i~IPTT~  126 (354)
T 1xah_A          110 AATLLRGVHFIQVPTTI  126 (354)
T ss_dssp             HHHBTTCCEEEEEECST
T ss_pred             HHHhccCCCEEEECCcc
Confidence            95  5789999999974

>3iv7_A Alcohol dehydrogenase IV; NP_602249.1, iron-containing alcohol dehydrogenase, structur genomics, joint center for structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}

Probab=95.58  E-value=0.013  Score=52.53  Aligned_cols=84  Identities=15%  Similarity=0.159  Sum_probs=63.2

Q ss_pred             CeEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCc-hhhhhhhccCC
Q 028883           59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAH-LSGVAAANSQI  137 (202)
Q Consensus        59 ~~V~IimGS~SD~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~-LpgvvA~~T~~  137 (202)
                      .+|.||++... ....++..   +.++-...+.-...|.+.+.+.+.++.+.+.++++||++-|++.. ++..+|....+
T Consensus        38 ~rvliVtd~~~-~~~~~~v~---~~L~~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGGs~iD~aK~iA~~~~~  113 (364)
T 3iv7_A           38 AKVMVIAGERE-MSIAHKVA---SEIEVAIWHDEVVMHVPIEVAERARAVATDNEIDLLVCVGGGSTIGLAKAIAMTTAL  113 (364)
T ss_dssp             SSEEEECCGGG-HHHHHHHT---TTSCCSEEECCCCTTCBHHHHHHHHHHHHHTTCCEEEEEESHHHHHHHHHHHHHHCC
T ss_pred             CEEEEEECCCH-HHHHHHHH---HHcCCCEEEcceecCCCHHHHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHhccCC
Confidence            36999998864 34444433   344422333334568888999999999988899999999999654 88999999999


Q ss_pred             cEEEecCCC
Q 028883          138 LVIRVPLLS  146 (202)
Q Consensus       138 PVIgVP~~~  146 (202)
                      |+|.||+..
T Consensus       114 P~i~IPTTa  122 (364)
T 3iv7_A          114 PIVAIPTTY  122 (364)
T ss_dssp             CEEEEECSS
T ss_pred             CEEEEcCCc
Confidence            999999975

>1ujn_A Dehydroquinate synthase; riken structu genomics/proteomics initiative, RSGI, structural genomics,; 1.80A {Thermus thermophilus} SCOP: e.22.1.1

Probab=95.40  E-value=0.017  Score=51.06  Aligned_cols=82  Identities=15%  Similarity=0.148  Sum_probs=64.3

Q ss_pred             CeEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEE---ccCCCchHHHHHHHHHhhcCc---eEEEEecCC-cCchhhhh
Q 028883           59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKIL---PPHQNCKEALSYALSAKERGI---KIIIVGDGV-EAHLSGVA  131 (202)
Q Consensus        59 ~~V~IimGS~SD~~v~~~a~~~L~~~gi~~ev~V~---SaHRtp~~l~~~~~~~~~~g~---~ViIa~AG~-aa~Lpgvv  131 (202)
                      .+|.||++..... +.++..+.|+ +++  + .+.   -.+++.+.+.+..+.+.+.++   ++||++-|+ ..-+++++
T Consensus        29 ~kvliVtd~~v~~-~~~~v~~~L~-~~~--~-~~~~~ge~~~~~~~v~~~~~~~~~~~~~r~d~IIavGGGsv~D~ak~~  103 (348)
T 1ujn_A           29 GPAALLFDRRVEG-FAQEVAKALG-VRH--L-LGLPGGEAAKSLEVYGKVLSWLAEKGLPRNATLLVVGGGTLTDLGGFV  103 (348)
T ss_dssp             SCEEEEEEGGGHH-HHHHHHHHHT-CCC--E-EEECCSGGGSSHHHHHHHHHHHHHHTCCTTCEEEEEESHHHHHHHHHH
T ss_pred             CEEEEEECCcHHH-HHHHHHHHhc-cCe--E-EEECCCCCCCCHHHHHHHHHHHHHcCCCCCCEEEEECCcHHHHHHHHH
Confidence            5799999987766 8888888887 554  3 333   367888999998888877665   899998776 57799999


Q ss_pred             hh--ccCCcEEEecCC
Q 028883          132 AA--NSQILVIRVPLL  145 (202)
Q Consensus       132 A~--~T~~PVIgVP~~  145 (202)
                      |+  +...|+|.||+.
T Consensus       104 A~~~~rgip~i~IPTT  119 (348)
T 1ujn_A          104 AATYLRGVAYLAFPTT  119 (348)
T ss_dssp             HHHBTTCCEEEEEECS
T ss_pred             HHHhccCCCEEEecCc
Confidence            96  567999999995

>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*

Probab=95.32  E-value=0.95  Score=37.01  Aligned_cols=84  Identities=13%  Similarity=0.141  Sum_probs=62.2

Q ss_pred             CCeEEEEecCCCC---HHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhh-
Q 028883           58 APIVGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAA-  133 (202)
Q Consensus        58 ~~~V~IimGS~SD---~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~-  133 (202)
                      +.+|+++.-+.++   ..+.+.+.+.++++|+  ++.+......+++..++++.+..++++.||........+...+.. 
T Consensus         2 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~--~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~   79 (313)
T 3m9w_A            2 EVKIGMAIDDLRLERWQKDRDIFVKKAESLGA--KVFVQSANGNEETQMSQIENMINRGVDVLVIIPYNGQVLSNVVKEA   79 (313)
T ss_dssp             -CEEEEEESCCSSSTTHHHHHHHHHHHHHTSC--EEEEEECTTCHHHHHHHHHHHHHTTCSEEEEECSSTTSCHHHHHHH
T ss_pred             CcEEEEEeCCCCChHHHHHHHHHHHHHHHcCC--EEEEECCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhhhHHHHHHH
Confidence            3578999876443   5567778888889985  666777788888888899998888999888877666655555544 


Q ss_pred             -ccCCcEEEec
Q 028883          134 -NSQILVIRVP  143 (202)
Q Consensus       134 -~T~~PVIgVP  143 (202)
                       ....|||.+=
T Consensus        80 ~~~~iPvV~~~   90 (313)
T 3m9w_A           80 KQEGIKVLAYD   90 (313)
T ss_dssp             HTTTCEEEEES
T ss_pred             HHCCCeEEEEC
Confidence             3578998764

>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}

Probab=95.26  E-value=0.75  Score=37.12  Aligned_cols=83  Identities=11%  Similarity=0.094  Sum_probs=60.3

Q ss_pred             CCCeEEEEecCCCC---HHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhh
Q 028883           57 DAPIVGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAA  133 (202)
Q Consensus        57 ~~~~V~IimGS~SD---~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~  133 (202)
                      +...|+++..+.++   ..+.+.+.+.+++.|+  ++.+...+..+++..++++.+..++++-||......  ....+.-
T Consensus         7 ~~~~Igvv~~~~~~~~~~~~~~gi~~~a~~~g~--~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~--~~~~~~~   82 (291)
T 3egc_A            7 RSNVVGLIVSDIENVFFAEVASGVESEARHKGY--SVLLANTAEDIVREREAVGQFFERRVDGLILAPSEG--EHDYLRT   82 (291)
T ss_dssp             CCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTC--EEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCCSS--CCHHHHH
T ss_pred             CCcEEEEEECCCcchHHHHHHHHHHHHHHHCCC--EEEEEeCCCCHHHHHHHHHHHHHCCCCEEEEeCCCC--ChHHHHH
Confidence            44689999988777   3556677778888885  677788888999999999998888898777655433  2233332


Q ss_pred             --ccCCcEEEec
Q 028883          134 --NSQILVIRVP  143 (202)
Q Consensus       134 --~T~~PVIgVP  143 (202)
                        ....|||.+=
T Consensus        83 ~~~~~iPvV~~~   94 (291)
T 3egc_A           83 ELPKTFPIVAVN   94 (291)
T ss_dssp             SSCTTSCEEEES
T ss_pred             hhccCCCEEEEe
Confidence              3578888654

>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}

Probab=95.22  E-value=0.21  Score=40.77  Aligned_cols=126  Identities=12%  Similarity=0.111  Sum_probs=82.2

Q ss_pred             CeEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhhccCCc
Q 028883           59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQIL  138 (202)
Q Consensus        59 ~~V~IimGS~SD~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~~T~~P  138 (202)
                      .++.+++....   ..+.+.+++.+++...++.+    ...++..+.++++ ..|++|||+-.|.+.    .+-.+++.|
T Consensus         5 ~~I~~iapy~~---l~~~~~~i~~e~~~~i~i~~----~~l~~~v~~a~~~-~~~~dVIISRGgta~----~lr~~~~iP   72 (196)
T 2q5c_A            5 LKIALISQNEN---LLNLFPKLALEKNFIPITKT----ASLTRASKIAFGL-QDEVDAIISRGATSD----YIKKSVSIP   72 (196)
T ss_dssp             CEEEEEESCHH---HHHHHHHHHHHHTCEEEEEE----CCHHHHHHHHHHH-TTTCSEEEEEHHHHH----HHHTTCSSC
T ss_pred             CcEEEEEccHH---HHHHHHHHHhhhCCceEEEE----CCHHHHHHHHHHh-cCCCeEEEECChHHH----HHHHhCCCC
Confidence            35666655433   33355556667776444433    3467777888888 788999998766555    445668899


Q ss_pred             EEEecCCCCCCChhhHHHhhcCCC--CCeeeEEecCChhhHHHHHHHHHccC--------CHHHHHHHHHHHh
Q 028883          139 VIRVPLLSEDWSEDDVINSIRMPS--HVQVASVPRNNAKNAALYAVKVLGIA--------DEDLLERIRKYVE  201 (202)
Q Consensus       139 VIgVP~~~~~l~G~DLlS~vqMP~--GvpVatV~I~n~~NAAl~Aa~IL~~~--------d~~l~~kl~~~~~  201 (202)
                      ||-+|++     |.|++..|+...  +-.+|.|+-.|..+.+-.-.++|+..        .+++.+.+++.++
T Consensus        73 VV~I~~s-----~~Dil~al~~a~~~~~kIavvg~~~~~~~~~~~~~ll~~~i~~~~~~~~~e~~~~i~~l~~  140 (196)
T 2q5c_A           73 SISIKVT-----RFDTMRAVYNAKRFGNELALIAYKHSIVDKHEIEAMLGVKIKEFLFSSEDEITTLISKVKT  140 (196)
T ss_dssp             EEEECCC-----HHHHHHHHHHHGGGCSEEEEEEESSCSSCHHHHHHHHTCEEEEEEECSGGGHHHHHHHHHH
T ss_pred             EEEEcCC-----HhHHHHHHHHHHhhCCcEEEEeCcchhhHHHHHHHHhCCceEEEEeCCHHHHHHHHHHHHH
Confidence            9999865     567333333211  22689998888888877778888853        3466677666554

>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}

Probab=95.05  E-value=1.1  Score=36.02  Aligned_cols=85  Identities=14%  Similarity=0.067  Sum_probs=62.2

Q ss_pred             CCCeEEEEecCCCCH---HHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhh
Q 028883           57 DAPIVGIIMESDLDL---PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAA  133 (202)
Q Consensus        57 ~~~~V~IimGS~SD~---~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~  133 (202)
                      +..+|+++.-+.+|-   ...+.+.+.++++|+  ++.+...+..+++..++++.+..++++.||............+.-
T Consensus         4 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~--~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~   81 (291)
T 3l49_A            4 EGKTIGITAIGTDHDWDLKAYQAQIAEIERLGG--TAIALDAGRNDQTQVSQIQTLIAQKPDAIIEQLGNLDVLNPWLQK   81 (291)
T ss_dssp             TTCEEEEEESCCSSHHHHHHHHHHHHHHHHTTC--EEEEEECTTCHHHHHHHHHHHHHHCCSEEEEESSCHHHHHHHHHH
T ss_pred             CCcEEEEEeCCCCChHHHHHHHHHHHHHHHcCC--EEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhhhHHHHHH
Confidence            446899999877763   356677888888885  667778888999988999998888899888765543344444432


Q ss_pred             --ccCCcEEEec
Q 028883          134 --NSQILVIRVP  143 (202)
Q Consensus       134 --~T~~PVIgVP  143 (202)
                        ....|||.+=
T Consensus        82 ~~~~~iPvV~~~   93 (291)
T 3l49_A           82 INDAGIPLFTVD   93 (291)
T ss_dssp             HHHTTCCEEEES
T ss_pred             HHHCCCcEEEec
Confidence              3578998863

>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}

Probab=94.76  E-value=0.63  Score=38.12  Aligned_cols=107  Identities=9%  Similarity=0.128  Sum_probs=69.9

Q ss_pred             CCeEEEEecCCCC---HHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCc---hhhhh
Q 028883           58 APIVGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAH---LSGVA  131 (202)
Q Consensus        58 ~~~V~IimGS~SD---~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~---Lpgvv  131 (202)
                      ...|++++.+.++   ..+.+.+.+.+++.|+  ++.+...+..+++..++++.+..++++-||........   +.-..
T Consensus        15 s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~--~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~~l~   92 (303)
T 3kke_A           15 SGTIGLIVPDVNNAVFADMFSGVQMAASGHST--DVLLGQIDAPPRGTQQLSRLVSEGRVDGVLLQRREDFDDDMLAAVL   92 (303)
T ss_dssp             --CEEEEESCTTSTTHHHHHHHHHHHHHHTTC--CEEEEECCSTTHHHHHHHHHHHSCSSSEEEECCCTTCCHHHHHHHH
T ss_pred             CCEEEEEeCCCcChHHHHHHHHHHHHHHHCCC--EEEEEeCCCChHHHHHHHHHHHhCCCcEEEEecCCCCcHHHHHHHh
Confidence            3579999987776   5667778888889986  55567788888888899999888889877766544332   22222


Q ss_pred             hhccCCcEEEecCCCCCCChhhHHHhhcCCCCCeeeEEecCChhhHHHHHHHHH
Q 028883          132 AANSQILVIRVPLLSEDWSEDDVINSIRMPSHVQVASVPRNNAKNAALYAVKVL  185 (202)
Q Consensus       132 A~~T~~PVIgVP~~~~~l~G~DLlS~vqMP~GvpVatV~I~n~~NAAl~Aa~IL  185 (202)
                       .  ..|||.+=...               ++ ++..|.+||-..+-+.+-.++
T Consensus        93 -~--~iPvV~i~~~~---------------~~-~~~~V~~D~~~~g~~a~~~L~  127 (303)
T 3kke_A           93 -E--GVPAVTINSRV---------------PG-RVGSVILDDQKGGGIATEHLI  127 (303)
T ss_dssp             -T--TSCEEEESCCC---------------TT-CCCEEEECHHHHHHHHHHHHH
T ss_pred             -C--CCCEEEECCcC---------------CC-CCCEEEECcHHHHHHHHHHHH
Confidence             2  78888763221               22 345576776655544444443

>1kq3_A Glycerol dehydrogenase; structural genomics, joint center FO structural genomics, JCSG, protein structure initiative, PS oxidoreductase; 1.50A {Thermotoga maritima} SCOP: e.22.1.2

Probab=94.62  E-value=0.0048  Score=54.71  Aligned_cols=85  Identities=12%  Similarity=0.079  Sum_probs=60.6

Q ss_pred             CeEEEEecCCCCHHH-HHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCC-cCchhhhhhhccC
Q 028883           59 PIVGIIMESDLDLPV-MNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGV-EAHLSGVAAANSQ  136 (202)
Q Consensus        59 ~~V~IimGS~SD~~v-~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~-aa~LpgvvA~~T~  136 (202)
                      .+|.||++....... .++..+.|++.|  +++.+.+-+-+.+.+.+..+.+.+ ++++||++-|+ ..-+++.+|....
T Consensus        42 ~~~liVtd~~~~~~~~~~~v~~~L~~~g--~~~~~~~ge~~~~~v~~~~~~~~~-~~d~IIavGGGsv~D~aK~iA~~~~  118 (376)
T 1kq3_A           42 ERAFVVIDDFVDKNVLGENFFSSFTKVR--VNKQIFGGECSDEEIERLSGLVEE-ETDVVVGIGGGKTLDTAKAVAYKLK  118 (376)
T ss_dssp             SEEEEEECHHHHHHTTCTTGGGGCSSSE--EEEEECCSSCBHHHHHHHHTTCCT-TCCEEEEEESHHHHHHHHHHHHHTT
T ss_pred             CeEEEEECccHHhhccHHHHHHHHHHcC--CeEEEeCCCCCHHHHHHHHHHHhc-CCCEEEEeCCcHHHHHHHHHHHhcC
Confidence            489999976432211 344445555555  345555555555678888777777 88999999887 5569999999999


Q ss_pred             CcEEEecCCC
Q 028883          137 ILVIRVPLLS  146 (202)
Q Consensus       137 ~PVIgVP~~~  146 (202)
                      +|+|.||+..
T Consensus       119 ~p~i~IPTTa  128 (376)
T 1kq3_A          119 KPVVIVPTIA  128 (376)
T ss_dssp             CCEEEEESSC
T ss_pred             CCEEEecCcc
Confidence            9999999975

>3clh_A 3-dehydroquinate synthase; shikimate pathway, aromatic amino acid biosynthesis, DHQS, amino-acid biosynthesis, cytoplasm, lyase, NAD; HET: NAD; 2.40A {Helicobacter pylori}

Probab=94.05  E-value=0.02  Score=50.39  Aligned_cols=85  Identities=16%  Similarity=0.093  Sum_probs=63.0

Q ss_pred             CeEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEc---cCCCchHHHHHHHHHhhcCc---eEEEEecCC-cCchhhhh
Q 028883           59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILP---PHQNCKEALSYALSAKERGI---KIIIVGDGV-EAHLSGVA  131 (202)
Q Consensus        59 ~~V~IimGS~SD~~v~~~a~~~L~~~gi~~ev~V~S---aHRtp~~l~~~~~~~~~~g~---~ViIa~AG~-aa~Lpgvv  131 (202)
                      .+|.||++........++..+.|++.+  +++.+..   .|++.+.+.+..+.+.+.++   ++||++.|+ ..-+++++
T Consensus        27 ~~~livtd~~v~~~~~~~v~~~L~~~~--~~~~~~~~~e~~k~~~~v~~~~~~~~~~~~~r~d~iIavGGGsv~D~ak~~  104 (343)
T 3clh_A           27 QKALIISDSIVAGLHLPYLLERLKALE--VRVCVIESGEKYKNFHSLERILNNAFEMQLNRHSLMIALGGGVISDMVGFA  104 (343)
T ss_dssp             SCEEEEEEHHHHTTTHHHHHTTEECSC--EEEEEECSSGGGCSHHHHHHHHHHHHHTTCCTTCEEEEEESHHHHHHHHHH
T ss_pred             CEEEEEECCcHHHHHHHHHHHHHHhCC--cEEEEeCCCCCCCCHHHHHHHHHHHHhcCCCCCceEEEECChHHHHHHHHH
Confidence            579999876543224555555554433  3444443   57789999999999988888   999999887 56799999


Q ss_pred             h--hccCCcEEEecCC
Q 028883          132 A--ANSQILVIRVPLL  145 (202)
Q Consensus       132 A--~~T~~PVIgVP~~  145 (202)
                      |  ....+|+|.||+.
T Consensus       105 A~~~~rgip~i~IPTT  120 (343)
T 3clh_A          105 SSIYFRGIDFINIPTT  120 (343)
T ss_dssp             HHHBTTCCEEEEEECS
T ss_pred             HHHhccCCCEEEeCCc
Confidence            9  4678999999998

>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C

Probab=93.76  E-value=1.5  Score=35.31  Aligned_cols=84  Identities=14%  Similarity=0.067  Sum_probs=60.3

Q ss_pred             CCCeEEEEecCCCCH---HHHHHHHHHHHHhCCCeEEEEEccCC--CchHHHHHHHHHhhcCceEEEEecCCcCchhhhh
Q 028883           57 DAPIVGIIMESDLDL---PVMNDAARTLSDFGVPYEIKILPPHQ--NCKEALSYALSAKERGIKIIIVGDGVEAHLSGVA  131 (202)
Q Consensus        57 ~~~~V~IimGS~SD~---~v~~~a~~~L~~~gi~~ev~V~SaHR--tp~~l~~~~~~~~~~g~~ViIa~AG~aa~Lpgvv  131 (202)
                      +..+|++++-+.+|-   .+.+.+.+.++++|+  ++.+...+.  .+++..++++.+..++++.||........+...+
T Consensus         4 ~~~~Igvi~~~~~~~~~~~~~~g~~~~a~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~~~~~~~~   81 (304)
T 3o1i_D            4 SDEKICAIYPHLKDSYWLSVNYGMVSEAEKQGV--NLRVLEAGGYPNKSRQEQQLALCTQWGANAIILGTVDPHAYEHNL   81 (304)
T ss_dssp             -CCEEEEEESCSCSHHHHHHHHHHHHHHHHHTC--EEEEEECSSTTCHHHHHHHHHHHHHHTCSEEEECCSSTTSSTTTH
T ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHHHHHcCC--eEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhHHHHHH
Confidence            446899999887763   345566777788885  677777777  8888888888888888998887766555444444


Q ss_pred             hhc-cCCcEEEe
Q 028883          132 AAN-SQILVIRV  142 (202)
Q Consensus       132 A~~-T~~PVIgV  142 (202)
                      ... ...|||.+
T Consensus        82 ~~~~~~iPvV~~   93 (304)
T 3o1i_D           82 KSWVGNTPVFAT   93 (304)
T ss_dssp             HHHTTTSCEEEC
T ss_pred             HHHcCCCCEEEe
Confidence            322 57898876

>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}

Probab=93.56  E-value=2.4  Score=34.20  Aligned_cols=127  Identities=13%  Similarity=0.148  Sum_probs=76.8

Q ss_pred             CCCeEEEEecCCCC---HHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhh
Q 028883           57 DAPIVGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAA  133 (202)
Q Consensus        57 ~~~~V~IimGS~SD---~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~  133 (202)
                      +...|+++.-..++   ....+.+.+.+++.|+  ++.+...+..+++..++++.+..++++-||........ ...+.-
T Consensus        19 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~~~-~~~~~~   95 (293)
T 2iks_A           19 RTRSIGLVIPDLENTSYTRIANYLERQARQRGY--QLLIACSEDQPDNEMRCIEHLLQRQVDAIIVSTSLPPE-HPFYQR   95 (293)
T ss_dssp             CCCEEEEEESCSCSHHHHHHHHHHHHHHHHTTC--EEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSSCTT-CHHHHT
T ss_pred             CCcEEEEEeCCCcCcHHHHHHHHHHHHHHHCCC--EEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCc-HHHHHH
Confidence            34689999876655   3455666777788885  56667777788888888888888888877776544322 222222


Q ss_pred             --ccCCcEEEecCCCCCCChhhHHHhhcCCCCCeeeEEecCChhhHHHHHHHHHccC------------CHHHHHHHHHH
Q 028883          134 --NSQILVIRVPLLSEDWSEDDVINSIRMPSHVQVASVPRNNAKNAALYAVKVLGIA------------DEDLLERIRKY  199 (202)
Q Consensus       134 --~T~~PVIgVP~~~~~l~G~DLlS~vqMP~GvpVatV~I~n~~NAAl~Aa~IL~~~------------d~~l~~kl~~~  199 (202)
                        ....||+.+=....             ..+  +..|..||...+.+++-.++...            .....+|++.|
T Consensus        96 ~~~~~iPvV~~~~~~~-------------~~~--~~~V~~d~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf  160 (293)
T 2iks_A           96 WANDPFPIVALDRALD-------------REH--FTSVVGADQDDAEMLAEELRKFPAETVLYLGALPELSVSFLREQGF  160 (293)
T ss_dssp             TTTSSSCEEEEESCCC-------------TTT--CEEEEECHHHHHHHHHHHHHTSCCSSEEEEEECTTSHHHHHHHHHH
T ss_pred             HHhCCCCEEEECCccC-------------cCC--CCEEEecCHHHHHHHHHHHHHCCCCEEEEEecCcccccHHHHHHHH
Confidence              34678887632211             012  34566677665555544444332            22345666666


Q ss_pred             Hh
Q 028883          200 VE  201 (202)
Q Consensus       200 ~~  201 (202)
                      ++
T Consensus       161 ~~  162 (293)
T 2iks_A          161 RT  162 (293)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}

Probab=93.49  E-value=1.3  Score=35.81  Aligned_cols=83  Identities=6%  Similarity=0.085  Sum_probs=51.8

Q ss_pred             CCCeEEEEecCCCC-----HHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhh
Q 028883           57 DAPIVGIIMESDLD-----LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVA  131 (202)
Q Consensus        57 ~~~~V~IimGS~SD-----~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~Lpgvv  131 (202)
                      +...|++++.+.+|     ..+.+.+.+.++++|.  ++.+......++...++.+.+..++++-||........  ..+
T Consensus         7 ~s~~Igvv~~~~~~~~~~~~~~~~gi~~~a~~~g~--~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~--~~~   82 (288)
T 3gv0_A            7 KTNVIALVLSVDEELMGFTSQMVFGITEVLSTTQY--HLVVTPHIHAKDSMVPIRYILETGSADGVIISKIEPND--PRV   82 (288)
T ss_dssp             CCCEEEEECBCCCCSSCHHHHHHHHHHHHHTTSSC--EEEECCBSSGGGTTHHHHHHHHHTCCSEEEEESCCTTC--HHH
T ss_pred             CCCEEEEEecCCccccHHHHHHHHHHHHHHHHcCC--EEEEecCCcchhHHHHHHHHHHcCCccEEEEecCCCCc--HHH
Confidence            44689999987665     2344555566667774  66677777667766677766667788877665322221  222


Q ss_pred             h--hccCCcEEEec
Q 028883          132 A--ANSQILVIRVP  143 (202)
Q Consensus       132 A--~~T~~PVIgVP  143 (202)
                      .  .....|||.+=
T Consensus        83 ~~l~~~~iPvV~i~   96 (288)
T 3gv0_A           83 RFMTERNMPFVTHG   96 (288)
T ss_dssp             HHHHHTTCCEEEES
T ss_pred             HHHhhCCCCEEEEC
Confidence            2  23578988654

>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}

Probab=93.48  E-value=1.5  Score=35.12  Aligned_cols=83  Identities=12%  Similarity=0.052  Sum_probs=57.3

Q ss_pred             CCCeEEEEecC-----CCC---HHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchh
Q 028883           57 DAPIVGIIMES-----DLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLS  128 (202)
Q Consensus        57 ~~~~V~IimGS-----~SD---~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~Lp  128 (202)
                      +...|++++.+     .++   ..+.+.+.+.++++|+  ++.+...+..++...++++.+..++++-||........  
T Consensus         7 ~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~vdgiIi~~~~~~~--   82 (292)
T 3k4h_A            7 TTKTLGLVMPSSASKAFQNPFFPEVIRGISSFAHVEGY--ALYMSTGETEEEIFNGVVKMVQGRQIGGIILLYSREND--   82 (292)
T ss_dssp             CCCEEEEECSSCHHHHTTSTHHHHHHHHHHHHHHHTTC--EEEECCCCSHHHHHHHHHHHHHTTCCCEEEESCCBTTC--
T ss_pred             CCCEEEEEecCCccccccCHHHHHHHHHHHHHHHHcCC--EEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEeCCCCCh--
Confidence            44689999988     444   2456667778888885  66677778778888888888888889877775543222  


Q ss_pred             hhhh--hccCCcEEEec
Q 028883          129 GVAA--ANSQILVIRVP  143 (202)
Q Consensus       129 gvvA--~~T~~PVIgVP  143 (202)
                      ..+.  .....|||.+=
T Consensus        83 ~~~~~l~~~~iPvV~~~   99 (292)
T 3k4h_A           83 RIIQYLHEQNFPFVLIG   99 (292)
T ss_dssp             HHHHHHHHTTCCEEEES
T ss_pred             HHHHHHHHCCCCEEEEC
Confidence            2222  24578988763

>3rf7_A Iron-containing alcohol dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: NAD EPE; 2.12A {Shewanella denitrificans}

Probab=93.38  E-value=0.071  Score=47.93  Aligned_cols=86  Identities=10%  Similarity=0.029  Sum_probs=59.8

Q ss_pred             CeEEEEecCCCCHHHHHHHHHHHHHhCCCeEE-EEEccCCCchHHHHHHHHHhhcC---ceEEEEecCCcCc-hhhhhhh
Q 028883           59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEI-KILPPHQNCKEALSYALSAKERG---IKIIIVGDGVEAH-LSGVAAA  133 (202)
Q Consensus        59 ~~V~IimGS~SD~~v~~~a~~~L~~~gi~~ev-~V~SaHRtp~~l~~~~~~~~~~g---~~ViIa~AG~aa~-LpgvvA~  133 (202)
                      .++.||++..--.   ....+.|+.-|+.+.+ .-...+.+.+.+.+.++.+.+.+   +++||++-|++.. ++..+|.
T Consensus        54 ~~~liVtd~~~~~---~~l~~~L~~~g~~~~~f~~v~~~pt~~~v~~~~~~~~~~~~~~~D~IIavGGGS~iD~AK~iA~  130 (375)
T 3rf7_A           54 DFVVFLVDDVHQH---KPLAARVPNKAHDLVIYVNVDDEPTTVQVDELTAQVKAFNTKLPVSVVGLGGGSTMDLAKAVSL  130 (375)
T ss_dssp             CCEEEEEEGGGTT---SHHHHHSCCCTTSEEEEECCSSCCBHHHHHHHHHHHHHHCSSCCSEEEEEESHHHHHHHHHHHH
T ss_pred             CeEEEEECchhhh---hHHHHHHHhcCCeEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHHH
Confidence            3577777643211   1233444444776542 22357788888989888887777   8999999999754 8888887


Q ss_pred             cc------------------CCcEEEecCCCC
Q 028883          134 NS------------------QILVIRVPLLSE  147 (202)
Q Consensus       134 ~T------------------~~PVIgVP~~~~  147 (202)
                      ..                  .+|+|.||+..+
T Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~P~i~IPTTag  162 (375)
T 3rf7_A          131 MLTNPGSSSEYQGWDLIKNPAVHHIGIPTVSG  162 (375)
T ss_dssp             HTSSCSCGGGGCEESCCCSCCCCEEEEESSCS
T ss_pred             HHhCCCCHHHhhccccccCCCCCEEEEcCCCc
Confidence            65                  689999999753

>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}

Probab=93.30  E-value=2.6  Score=33.72  Aligned_cols=82  Identities=12%  Similarity=0.175  Sum_probs=58.8

Q ss_pred             CCCeEEEEecCCCCH---HHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhh
Q 028883           57 DAPIVGIIMESDLDL---PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAA  133 (202)
Q Consensus        57 ~~~~V~IimGS~SD~---~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~  133 (202)
                      +...|+++..+.+|-   ...+.+.+.+++.|+  ++.+...+..+++..++++.+..++++-||......   ...+.-
T Consensus         6 ~s~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~---~~~~~~   80 (276)
T 3jy6_A            6 SSKLIAVIVANIDDYFSTELFKGISSILESRGY--IGVLFDANADIEREKTLLRAIGSRGFDGLILQSFSN---PQTVQE   80 (276)
T ss_dssp             CCCEEEEEESCTTSHHHHHHHHHHHHHHHTTTC--EEEEEECTTCHHHHHHHHHHHHTTTCSEEEEESSCC---HHHHHH
T ss_pred             CCcEEEEEeCCCCchHHHHHHHHHHHHHHHCCC--EEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEecCCc---HHHHHH
Confidence            446899999887663   345556666777774  777788888898888899988888898777765444   444433


Q ss_pred             --ccCCcEEEec
Q 028883          134 --NSQILVIRVP  143 (202)
Q Consensus       134 --~T~~PVIgVP  143 (202)
                        ....|||-+=
T Consensus        81 l~~~~iPvV~i~   92 (276)
T 3jy6_A           81 ILHQQMPVVSVD   92 (276)
T ss_dssp             HHTTSSCEEEES
T ss_pred             HHHCCCCEEEEe
Confidence              2578998763

>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*

Probab=93.12  E-value=2.6  Score=33.24  Aligned_cols=110  Identities=11%  Similarity=0.125  Sum_probs=70.2

Q ss_pred             CeEEEEecCCCCH---HHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhh--h
Q 028883           59 PIVGIIMESDLDL---PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAA--A  133 (202)
Q Consensus        59 ~~V~IimGS~SD~---~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA--~  133 (202)
                      ..|+++..+.++-   ...+.+.+.+++.|+  ++.+...+..+++..++++.+..++++-||........ ...+.  .
T Consensus         3 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~--~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~-~~~~~~~~   79 (272)
T 3o74_A            3 RTLGFILPDLENPSYARIAKQLEQGARARGY--QLLIASSDDQPDSERQLQQLFRARRCDALFVASCLPPE-DDSYRELQ   79 (272)
T ss_dssp             CEEEEEESCTTCHHHHHHHHHHHHHHHHTTC--EEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCCCCSS-CCHHHHHH
T ss_pred             eEEEEEeCCCcChhHHHHHHHHHHHHHHCCC--EEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecCcccc-HHHHHHHH
Confidence            5799999887763   345667777788876  56667788889988899998888889877776554222 12222  2


Q ss_pred             ccCCcEEEecCCCCCCChhhHHHhhcCCCCCeeeEEecCChhhHHHHHHHHHc
Q 028883          134 NSQILVIRVPLLSEDWSEDDVINSIRMPSHVQVASVPRNNAKNAALYAVKVLG  186 (202)
Q Consensus       134 ~T~~PVIgVP~~~~~l~G~DLlS~vqMP~GvpVatV~I~n~~NAAl~Aa~IL~  186 (202)
                      ....|||.+=....               +-++..|..||-..+-+++-.++.
T Consensus        80 ~~~iPvV~~~~~~~---------------~~~~~~V~~d~~~~~~~a~~~L~~  117 (272)
T 3o74_A           80 DKGLPVIAIDRRLD---------------PAHFCSVISDDRDASRQLAASLLS  117 (272)
T ss_dssp             HTTCCEEEESSCCC---------------TTTCEEEEECHHHHHHHHHHHHHT
T ss_pred             HcCCCEEEEccCCC---------------ccccCEEEEchHHHHHHHHHHHHH
Confidence            35788886532211               112355766766555554444443

>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}

Probab=93.08  E-value=2.8  Score=34.76  Aligned_cols=84  Identities=8%  Similarity=0.087  Sum_probs=58.5

Q ss_pred             CCCeEEEEecC--CCC---HHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhh
Q 028883           57 DAPIVGIIMES--DLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVA  131 (202)
Q Consensus        57 ~~~~V~IimGS--~SD---~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~Lpgvv  131 (202)
                      +...|+++...  .++   ..+.+.+.+.+++.|+  ++.+...+..+++-.++++.+..++++-||........ ..+.
T Consensus        60 ~~~~Igvi~~~~~~~~~~~~~~~~gi~~~a~~~g~--~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~-~~~~  136 (338)
T 3dbi_A           60 STQTLGLVVTNTLYHGIYFSELLFHAARMAEEKGR--QLLLADGKHSAEEERQAIQYLLDLRCDAIMIYPRFLSV-DEID  136 (338)
T ss_dssp             CCSEEEEEECTTTTSTTHHHHHHHHHHHHHHHTTC--EEEEEECTTSHHHHHHHHHHHHHTTCSEEEECCSSSCH-HHHH
T ss_pred             CCCEEEEEecCCcccChhHHHHHHHHHHHHHHCCC--EEEEEeCCCChHHHHHHHHHHHhCCCCEEEEeCCCCCh-HHHH
Confidence            44689999987  444   3556777788888885  66777888889988888888888889877776543322 2222


Q ss_pred             --hhccCCcEEEec
Q 028883          132 --AANSQILVIRVP  143 (202)
Q Consensus       132 --A~~T~~PVIgVP  143 (202)
                        ......||+-+=
T Consensus       137 ~~~~~~~iPvV~~~  150 (338)
T 3dbi_A          137 DIIDAHSQPIMVLN  150 (338)
T ss_dssp             HHHHHCSSCEEEES
T ss_pred             HHHHcCCCCEEEEc
Confidence              233568888653

>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}

Probab=93.03  E-value=0.89  Score=36.96  Aligned_cols=81  Identities=11%  Similarity=0.064  Sum_probs=57.9

Q ss_pred             CCCeEEEEecCCCC----HHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhh
Q 028883           57 DAPIVGIIMESDLD----LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAA  132 (202)
Q Consensus        57 ~~~~V~IimGS~SD----~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA  132 (202)
                      +...|++++.+.++    ..+.+.+.+.+++.|.  ++.+...+..+++..++++.+..++++-||........   .+.
T Consensus        12 ~s~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~g~--~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~~~~---~~~   86 (301)
T 3miz_A           12 RSNTFGIITDYVSTTPYSVDIVRGIQDWANANGK--TILIANTGGSSEREVEIWKMFQSHRIDGVLYVTMYRRI---VDP   86 (301)
T ss_dssp             CCCEEEEEESSTTTCCSCHHHHHHHHHHHHHTTC--EEEEEECTTCHHHHHHHHHHHHHTTCSEEEEEEEEEEE---CCC
T ss_pred             CCCEEEEEeCCCcCcccHHHHHHHHHHHHHHCCC--EEEEEeCCCChHHHHHHHHHHHhCCCCEEEEecCCccH---HHH
Confidence            34689999987665    2788889999999985  66677788888988899998888888866655433222   221


Q ss_pred             --hccCCcEEEe
Q 028883          133 --ANSQILVIRV  142 (202)
Q Consensus       133 --~~T~~PVIgV  142 (202)
                        .....|||.+
T Consensus        87 ~~~~~~iPvV~~   98 (301)
T 3miz_A           87 ESGDVSIPTVMI   98 (301)
T ss_dssp             CCTTCCCCEEEE
T ss_pred             HHHhCCCCEEEE
Confidence              2346788765

>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae}

Probab=93.00  E-value=0.73  Score=37.79  Aligned_cols=83  Identities=12%  Similarity=0.175  Sum_probs=60.1

Q ss_pred             CeEEEEecCCCC---HHHHHHHHHHHHHhCC---CeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhh
Q 028883           59 PIVGIIMESDLD---LPVMNDAARTLSDFGV---PYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAA  132 (202)
Q Consensus        59 ~~V~IimGS~SD---~~v~~~a~~~L~~~gi---~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA  132 (202)
                      ..|||+. +.++   -.+.+.+.+.|++.|.   ...+.++..++.+++..++++.+.+++.+.||+.. .. +..-+..
T Consensus         3 ~~Igvi~-~~~~p~~~~i~~gi~~~l~~~gy~g~~v~l~~~~~~~~~~~~~~~~~~l~~~~vDgII~~~-~~-~~~~~~~   79 (295)
T 3lft_A            3 AKIGVLQ-FVSHPSLDLIYKGIQDGLAEEGYKDDQVKIDFMNSEGDQSKVATMSKQLVANGNDLVVGIA-TP-AAQGLAS   79 (295)
T ss_dssp             EEEEEEE-CSCCHHHHHHHHHHHHHHHHTTCCGGGEEEEEEECTTCHHHHHHHHHHHTTSSCSEEEEES-HH-HHHHHHH
T ss_pred             eEEEEEE-ccCChhHHHHHHHHHHHHHHcCCCCCceEEEEecCCCCHHHHHHHHHHHHhcCCCEEEECC-cH-HHHHHHH
Confidence            4789883 3333   3455677788889998   77888899999999999999999988899888764 22 2222333


Q ss_pred             hccCCcEEEecC
Q 028883          133 ANSQILVIRVPL  144 (202)
Q Consensus       133 ~~T~~PVIgVP~  144 (202)
                      .....||+-|-.
T Consensus        80 ~~~~iPvV~~~~   91 (295)
T 3lft_A           80 ATKDLPVIMAAI   91 (295)
T ss_dssp             HCSSSCEEEESC
T ss_pred             cCCCCCEEEEec
Confidence            346789998753

>3s99_A Basic membrane lipoprotein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, adenine; HET: ADE; 2.05A {Brucella melitensis biovar abortus}

Probab=93.00  E-value=2.8  Score=36.93  Aligned_cols=87  Identities=16%  Similarity=0.097  Sum_probs=56.3

Q ss_pred             CCCCeEEEEecC-CCCH----HHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEec-CCcCchhh
Q 028883           56 TDAPIVGIIMES-DLDL----PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGD-GVEAHLSG  129 (202)
Q Consensus        56 ~~~~~V~IimGS-~SD~----~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~A-G~aa~Lpg  129 (202)
                      .++.+|++|.-+ -+|.    .+.+-+.+..+++|-.+++.++......+..+++++++.++|+++||+.. +....+--
T Consensus        24 ~~~~kIglv~~g~i~D~~f~~~~~~G~~~~~~~~G~~~~~~~~e~~~~~~d~~~~l~~l~~~g~d~Ii~~g~~~~~~~~~  103 (356)
T 3s99_A           24 EEKLKVGFIYIGPPGDFGWTYQHDQARKELVEALGDKVETTFLENVAEGADAERSIKRIARAGNKLIFTTSFGYMDPTVK  103 (356)
T ss_dssp             --CEEEEEECSSCGGGSSHHHHHHHHHHHHHHHHTTTEEEEEECSCCTTHHHHHHHHHHHHTTCSEEEECSGGGHHHHHH
T ss_pred             CCCCEEEEEEccCCCchhHHHHHHHHHHHHHHHhCCceEEEEEecCCCHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHH
Confidence            344679988854 5573    34555566667899667887776655566678888889889999888764 23444433


Q ss_pred             hhhhccCCcEEEe
Q 028883          130 VAAANSQILVIRV  142 (202)
Q Consensus       130 vvA~~T~~PVIgV  142 (202)
                      +..-....|++-|
T Consensus       104 vA~~~Pdv~fv~i  116 (356)
T 3s99_A          104 VAKKFPDVKFEHA  116 (356)
T ss_dssp             HHTTCTTSEEEEE
T ss_pred             HHHHCCCCEEEEE
Confidence            3333446677766

>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A

Probab=92.87  E-value=3  Score=33.29  Aligned_cols=85  Identities=9%  Similarity=0.121  Sum_probs=56.3

Q ss_pred             CCCeEEEEecCCCCH---HHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCc-Cchhhhhh
Q 028883           57 DAPIVGIIMESDLDL---PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVE-AHLSGVAA  132 (202)
Q Consensus        57 ~~~~V~IimGS~SD~---~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~a-a~LpgvvA  132 (202)
                      +..+|++++.+.++-   ...+.+.+.+++.|.  ++.+......+++..++++.+..++++.||...... ..+-..+.
T Consensus         6 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~~~~~~~~l~   83 (289)
T 1dbq_A            6 HTKSIGLLATSSEAAYFAEIIEAVEKNCFQKGY--TLILGNAWNNLEKQRAYLSMMAQKRVDGLLVMCSEYPEPLLAMLE   83 (289)
T ss_dssp             --CEEEEEESCTTSHHHHHHHHHHHHHHHHHTC--EEEEEECTTCHHHHHHHHHHHHHTTCSEEEEECSCCCHHHHHHHH
T ss_pred             CCCEEEEEeCCCCChHHHHHHHHHHHHHHHcCC--eEEEEcCCCChHHHHHHHHHHHhCCCCEEEEEeccCCHHHHHHHH
Confidence            346899999766552   345566777788885  556667778888888888888888888777665443 22333333


Q ss_pred             hccCCcEEEec
Q 028883          133 ANSQILVIRVP  143 (202)
Q Consensus       133 ~~T~~PVIgVP  143 (202)
                      .....|||.+-
T Consensus        84 ~~~~iPvV~~~   94 (289)
T 1dbq_A           84 EYRHIPMVVMD   94 (289)
T ss_dssp             HTTTSCEEEEE
T ss_pred             hccCCCEEEEc
Confidence            23578988763

>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}

Probab=92.75  E-value=2  Score=35.02  Aligned_cols=83  Identities=10%  Similarity=0.100  Sum_probs=57.1

Q ss_pred             CCCeEEEEecC-----CCC---HHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchh
Q 028883           57 DAPIVGIIMES-----DLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLS  128 (202)
Q Consensus        57 ~~~~V~IimGS-----~SD---~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~Lp  128 (202)
                      +...|+++...     .++   ..+.+.+.+.+++.|+  ++.+...+..++...++++.+..++++-||........  
T Consensus        21 ~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~g~--~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~--   96 (305)
T 3huu_A           21 KTLTIGLIQKSSAPEIRQNPFNSDVLNGINQACNVRGY--STRMTVSENSGDLYHEVKTMIQSKSVDGFILLYSLKDD--   96 (305)
T ss_dssp             CCCEEEEECSCCSHHHHTSHHHHHHHHHHHHHHHHHTC--EEEECCCSSHHHHHHHHHHHHHTTCCSEEEESSCBTTC--
T ss_pred             CCCEEEEEeCCCccccccCcHHHHHHHHHHHHHHHCCC--EEEEEeCCCChHHHHHHHHHHHhCCCCEEEEeCCcCCc--
Confidence            44689999987     444   3456677778888885  66677778788888888888888889877765433221  


Q ss_pred             hhhh--hccCCcEEEec
Q 028883          129 GVAA--ANSQILVIRVP  143 (202)
Q Consensus       129 gvvA--~~T~~PVIgVP  143 (202)
                      ..+.  .....|||-+=
T Consensus        97 ~~~~~l~~~~iPvV~i~  113 (305)
T 3huu_A           97 PIEHLLNEFKVPYLIVG  113 (305)
T ss_dssp             HHHHHHHHTTCCEEEES
T ss_pred             HHHHHHHHcCCCEEEEC
Confidence            2222  23578888763

>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}

Probab=92.73  E-value=3.1  Score=33.22  Aligned_cols=85  Identities=12%  Similarity=0.090  Sum_probs=61.2

Q ss_pred             CCCeEEEEecCCCC---HHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhh
Q 028883           57 DAPIVGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAA  133 (202)
Q Consensus        57 ~~~~V~IimGS~SD---~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~  133 (202)
                      +..+|++++.+.++   ....+.+.+.++++|+  ++.+...+..+++..++++.+..++++.||........+...+.-
T Consensus         7 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~--~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~~~   84 (293)
T 3l6u_A            7 KRNIVGFTIVNDKHEFAQRLINAFKAEAKANKY--EALVATSQNSRISEREQILEFVHLKVDAIFITTLDDVYIGSAIEE   84 (293)
T ss_dssp             --CEEEEEESCSCSHHHHHHHHHHHHHHHHTTC--EEEEEECSSCHHHHHHHHHHHHHTTCSEEEEECSCTTTTHHHHHH
T ss_pred             CCcEEEEEEecCCcHHHHHHHHHHHHHHHHcCC--EEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecCChHHHHHHHHH
Confidence            44689999988776   3345667777888876  666778888899888999998888898888766555554444432


Q ss_pred             --ccCCcEEEec
Q 028883          134 --NSQILVIRVP  143 (202)
Q Consensus       134 --~T~~PVIgVP  143 (202)
                        ....|||.+=
T Consensus        85 ~~~~~iPvV~~~   96 (293)
T 3l6u_A           85 AKKAGIPVFAID   96 (293)
T ss_dssp             HHHTTCCEEEES
T ss_pred             HHHcCCCEEEec
Confidence              3578998863

>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}

Probab=92.50  E-value=3.3  Score=33.44  Aligned_cols=83  Identities=6%  Similarity=-0.025  Sum_probs=54.6

Q ss_pred             CCCeEEEEecCCCC---HHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHH---HHHHHhhcCceEEEEecCCcCchhhh
Q 028883           57 DAPIVGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALS---YALSAKERGIKIIIVGDGVEAHLSGV  130 (202)
Q Consensus        57 ~~~~V~IimGS~SD---~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~---~~~~~~~~g~~ViIa~AG~aa~Lpgv  130 (202)
                      +...|+++.-..+|   ....+.+.+.+++.|.  ++.+......+++..+   +++.+..++++-||.......  ...
T Consensus         7 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~--~~~   82 (290)
T 2rgy_A            7 QLGIIGLFVPTFFGSYYGTILKQTDLELRAVHR--HVVVATGCGESTPREQALEAVRFLIGRDCDGVVVISHDLH--DED   82 (290)
T ss_dssp             -CCEEEEECSCSCSHHHHHHHHHHHHHHHHTTC--EEEEECCCSSSCHHHHHHHHHHHHHHTTCSEEEECCSSSC--HHH
T ss_pred             CCCeEEEEeCCCCCchHHHHHHHHHHHHHHCCC--EEEEEeCCCchhhhhhHHHHHHHHHhcCccEEEEecCCCC--HHH
Confidence            34689999876555   2455566777788886  5666777777777777   788887788887777654432  222


Q ss_pred             hh--hccCCcEEEec
Q 028883          131 AA--ANSQILVIRVP  143 (202)
Q Consensus       131 vA--~~T~~PVIgVP  143 (202)
                      +.  .....|||.+-
T Consensus        83 ~~~l~~~~iPvV~~~   97 (290)
T 2rgy_A           83 LDELHRMHPKMVFLN   97 (290)
T ss_dssp             HHHHHHHCSSEEEES
T ss_pred             HHHHhhcCCCEEEEc
Confidence            22  23568998763

>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4

Probab=92.41  E-value=0.83  Score=33.92  Aligned_cols=68  Identities=22%  Similarity=0.250  Sum_probs=42.4

Q ss_pred             HHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchh-----hh---hhhccCCcEEEecCCC
Q 028883           75 NDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLS-----GV---AAANSQILVIRVPLLS  146 (202)
Q Consensus        75 ~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~Lp-----gv---vA~~T~~PVIgVP~~~  146 (202)
                      +++.+.++..|++++..+..-  .  -...+.+.+++.+++.||.++-+.+.+.     ++   +.-+++.||+-||...
T Consensus        86 ~~~~~~~~~~g~~~~~~v~~G--~--~~~~I~~~a~~~~~dlIV~G~~g~~~~~~~~~GSv~~~vl~~~~~pVlvv~~~~  161 (162)
T 1mjh_A           86 ENIKKELEDVGFKVKDIIVVG--I--PHEEIVKIAEDEGVDIIIMGSHGKTNLKEILLGSVTENVIKKSNKPVLVVKRKN  161 (162)
T ss_dssp             HHHHHHHHHTTCEEEEEEEEE--C--HHHHHHHHHHHTTCSEEEEESCCSSCCTTCSSCHHHHHHHHHCCSCEEEECCCC
T ss_pred             HHHHHHHHHcCCceEEEEcCC--C--HHHHHHHHHHHcCCCEEEEcCCCCCCccceEecchHHHHHHhCCCCEEEEeCCC
Confidence            344445556799888776542  2  2344555556677888888766544432     22   3456899999998653

>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}

Probab=92.06  E-value=1.5  Score=35.67  Aligned_cols=83  Identities=12%  Similarity=0.139  Sum_probs=54.9

Q ss_pred             CCCeEEEEecC-----CCC---HHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchh
Q 028883           57 DAPIVGIIMES-----DLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLS  128 (202)
Q Consensus        57 ~~~~V~IimGS-----~SD---~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~Lp  128 (202)
                      +...|++++..     .+|   ..+.+.+.+.+++.|.  ++.+...+..+++..++++.+..++++-||........  
T Consensus         6 ~s~~Igvi~~~~~~~~~~~~f~~~~~~gi~~~a~~~g~--~~~~~~~~~~~~~~~~~~~~l~~~~vdGiI~~~~~~~~--   81 (295)
T 3hcw_A            6 QTYKIGLVLKGSEEPIRLNPFYINVLLGISETCNQHGY--GTQTTVSNNMNDLMDEVYKMIKQRMVDAFILLYSKEND--   81 (295)
T ss_dssp             CSCEEEEECSCCCHHHHSCHHHHHHHHHHHHHHHTTTC--EEEECCCCSHHHHHHHHHHHHHTTCCSEEEESCCCTTC--
T ss_pred             CCcEEEEEeecCCcccccChHHHHHHHHHHHHHHHCCC--EEEEEcCCCChHHHHHHHHHHHhCCcCEEEEcCcccCh--
Confidence            44689999843     233   3456677777788875  66677777777877888888888888877765433221  


Q ss_pred             hhhh--hccCCcEEEec
Q 028883          129 GVAA--ANSQILVIRVP  143 (202)
Q Consensus       129 gvvA--~~T~~PVIgVP  143 (202)
                      ..+.  .....|||-+=
T Consensus        82 ~~~~~l~~~~iPvV~i~   98 (295)
T 3hcw_A           82 PIKQMLIDESMPFIVIG   98 (295)
T ss_dssp             HHHHHHHHTTCCEEEES
T ss_pred             HHHHHHHhCCCCEEEEC
Confidence            2222  23578988763

>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}

Probab=92.04  E-value=2.9  Score=33.97  Aligned_cols=110  Identities=12%  Similarity=0.083  Sum_probs=63.4

Q ss_pred             CCCeEEEEec----CCCC---HHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhh
Q 028883           57 DAPIVGIIME----SDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSG  129 (202)
Q Consensus        57 ~~~~V~IimG----S~SD---~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~Lpg  129 (202)
                      +...|++++-    ..++   ..+.+.+.+.+++.|..  +.+...+. ++...++.+.+..++++-||........  .
T Consensus         5 ~s~~Igvi~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~--~~~~~~~~-~~~~~~~~~~l~~~~vdGiIi~~~~~~~--~   79 (294)
T 3qk7_A            5 RTDAIALAYPSRPRVLNNSTFLEMISWIGIELGKRGLD--LLLIPDEP-GEKYQSLIHLVETRRVDALIVAHTQPED--F   79 (294)
T ss_dssp             CCCEEEEEEESCSGGGSCHHHHHHHHHHHHHHHHTTCE--EEEEEECT-TCCCHHHHHHHHHTCCSEEEECSCCSSC--H
T ss_pred             ccceEEEEecCCCccccChhHHHHHHHHHHHHHHCCCE--EEEEeCCC-hhhHHHHHHHHHcCCCCEEEEeCCCCCh--H
Confidence            3468999997    4444   34566777788888864  44444443 5555666676767788877766544332  2


Q ss_pred             hhh--hccCCcEEEecCCCCCCChhhHHHhhcCCCCCeeeEEecCChhhHHHHHHHHHc
Q 028883          130 VAA--ANSQILVIRVPLLSEDWSEDDVINSIRMPSHVQVASVPRNNAKNAALYAVKVLG  186 (202)
Q Consensus       130 vvA--~~T~~PVIgVP~~~~~l~G~DLlS~vqMP~GvpVatV~I~n~~NAAl~Aa~IL~  186 (202)
                      .+.  .....|||-+=...               .+-++..|.+||-..+.+++-.++.
T Consensus        80 ~~~~l~~~~iPvV~~~~~~---------------~~~~~~~V~~D~~~~~~~a~~~L~~  123 (294)
T 3qk7_A           80 RLQYLQKQNFPFLALGRSH---------------LPKPYAWFDFDNHAGASLAVKRLLE  123 (294)
T ss_dssp             HHHHHHHTTCCEEEESCCC---------------CSSCCEEEEECHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCCEEEECCCC---------------CCCCCCEEEcChHHHHHHHHHHHHH
Confidence            222  23468988753321               1122355777776555544444443

>3lkv_A Uncharacterized conserved domain protein; ATPase binding cassette, PSI, MCSG, structural genomics, Pro structure initiative; HET: PHE; 2.20A {Vibrio cholerae}

Probab=91.92  E-value=0.88  Score=38.13  Aligned_cols=87  Identities=11%  Similarity=0.081  Sum_probs=61.0

Q ss_pred             CCCCCCeEEEEecCCCCHHHHH----HHHHHHHHhCC----CeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcC
Q 028883           54 DSTDAPIVGIIMESDLDLPVMN----DAARTLSDFGV----PYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEA  125 (202)
Q Consensus        54 ~~~~~~~V~IimGS~SD~~v~~----~a~~~L~~~gi----~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa  125 (202)
                      ...+..+|||+-  --+-|-..    ...+.|++.|.    +.++.+..+...+.++.++++++..++.++||+++--+ 
T Consensus         4 ~~~~~~~igi~q--~~~hp~ld~~~~G~~~~L~~~G~~~g~nv~~~~~~a~gd~~~~~~~~~~l~~~~~DlIiai~t~a-   80 (302)
T 3lkv_A            4 IMAKTAKVAVSQ--IVEHPALDATRQGLLDGLKAKGYEEGKNLEFDYKTAQGNPAIAVQIARQFVGENPDVLVGIATPT-   80 (302)
T ss_dssp             ---CCEEEEEEE--SCCCHHHHHHHHHHHHHHHHTTCCBTTTEEEEEEECTTCHHHHHHHHHHHHTTCCSEEEEESHHH-
T ss_pred             hhcCCceEEEEE--eecChhHHHHHHHHHHHHHhhCcccCCcEEEEEEeCCCCHHHHHHHHHHHHhcCCcEEEEcCCHH-
Confidence            345667899883  12333333    34567777765    57889999999999999999999999999999875332 


Q ss_pred             chhhhhhhccCCcEEEecC
Q 028883          126 HLSGVAAANSQILVIRVPL  144 (202)
Q Consensus       126 ~LpgvvA~~T~~PVIgVP~  144 (202)
                       .-.+.......||+-+-+
T Consensus        81 -a~a~~~~~~~iPVVf~~v   98 (302)
T 3lkv_A           81 -AQALVSATKTIPIVFTAV   98 (302)
T ss_dssp             -HHHHHHHCSSSCEEEEEE
T ss_pred             -HHHHHhhcCCCCeEEEec
Confidence             334555667889987744

>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}

Probab=91.90  E-value=4.8  Score=33.46  Aligned_cols=84  Identities=12%  Similarity=0.101  Sum_probs=60.5

Q ss_pred             CCeEEEEecCCCC----HHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhh--cCceEEEEecCCcCchhhhh
Q 028883           58 APIVGIIMESDLD----LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKE--RGIKIIIVGDGVEAHLSGVA  131 (202)
Q Consensus        58 ~~~V~IimGS~SD----~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~--~g~~ViIa~AG~aa~Lpgvv  131 (202)
                      .++|++++-+.++    ..+.+.+.+.++++|+  ++.+......+++..+.++++..  ++++.||... ........+
T Consensus         3 ~~~Ig~i~p~~~~~~f~~~~~~g~~~~a~~~g~--~~~~~~~~~~~~~~~~~i~~~i~~~~~vDgiIi~~-~~~~~~~~~   79 (350)
T 3h75_A            3 LTSVVFLNPGNSTETFWVSYSQFMQAAARDLGL--DLRILYAERDPQNTLQQARELFQGRDKPDYLMLVN-EQYVAPQIL   79 (350)
T ss_dssp             CCEEEEEECSCTTCHHHHHHHHHHHHHHHHHTC--EEEEEECTTCHHHHHHHHHHHHHSSSCCSEEEEEC-CSSHHHHHH
T ss_pred             CCEEEEECCCCCCChHHHHHHHHHHHHHHHcCC--eEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEeC-chhhHHHHH
Confidence            4689999998887    3456667777888987  55566788888888888888777  4888777764 444555555


Q ss_pred             hh--ccCCcEEEecC
Q 028883          132 AA--NSQILVIRVPL  144 (202)
Q Consensus       132 A~--~T~~PVIgVP~  144 (202)
                      .-  ....|||.+=.
T Consensus        80 ~~~~~~giPvV~~~~   94 (350)
T 3h75_A           80 RLSQGSGIKLFIVNS   94 (350)
T ss_dssp             HHHTTSCCEEEEEES
T ss_pred             HHHHhCCCcEEEEcC
Confidence            43  35789987643

>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*

Probab=91.49  E-value=2.2  Score=35.31  Aligned_cols=83  Identities=12%  Similarity=0.071  Sum_probs=58.3

Q ss_pred             CeEEEEecCCCCH---HHHHHHHHHHHHhCCCeEEEEE-ccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhh-
Q 028883           59 PIVGIIMESDLDL---PVMNDAARTLSDFGVPYEIKIL-PPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAA-  133 (202)
Q Consensus        59 ~~V~IimGS~SD~---~v~~~a~~~L~~~gi~~ev~V~-SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~-  133 (202)
                      .+|++++-..++-   ...+.+.+.++++|+  ++.+. .....++.-.+.++++..++++.||...-...++..++.- 
T Consensus         4 ~~Igvi~~~~~~~~~~~~~~g~~~~~~~~g~--~~~~~~~~~~d~~~q~~~i~~li~~~vdgiii~~~~~~~~~~~~~~a   81 (316)
T 1tjy_A            4 ERIAFIPKLVGVGFFTSGGNGAQEAGKALGI--DVTYDGPTEPSVSGQVQLVNNFVNQGYDAIIVSAVSPDGLCPALKRA   81 (316)
T ss_dssp             CEEEEECSSSSSHHHHHHHHHHHHHHHHHTC--EEEECCCSSCCHHHHHHHHHHHHHTTCSEEEECCSSSSTTHHHHHHH
T ss_pred             CEEEEEeCCCCChHHHHHHHHHHHHHHHhCC--EEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCHHHHHHHHHHH
Confidence            5799998766552   233455566778884  66665 4677888888888888888999888877666665555532 


Q ss_pred             -ccCCcEEEec
Q 028883          134 -NSQILVIRVP  143 (202)
Q Consensus       134 -~T~~PVIgVP  143 (202)
                       ....|||.+-
T Consensus        82 ~~~gipvV~~d   92 (316)
T 1tjy_A           82 MQRGVKILTWD   92 (316)
T ss_dssp             HHTTCEEEEES
T ss_pred             HHCcCEEEEec
Confidence             3578999873

>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}

Probab=91.47  E-value=5.2  Score=32.99  Aligned_cols=86  Identities=10%  Similarity=0.056  Sum_probs=58.5

Q ss_pred             CCCeEEEEecCCCCH---HHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcC--ceEEEEecCCcCchhhhh
Q 028883           57 DAPIVGIIMESDLDL---PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERG--IKIIIVGDGVEAHLSGVA  131 (202)
Q Consensus        57 ~~~~V~IimGS~SD~---~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g--~~ViIa~AG~aa~Lpgvv  131 (202)
                      +..+|+++..+.++-   ...+.+.+.+++.|+.  +.+......+++..++++.+..++  ++.||........+...+
T Consensus         4 ~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~--l~~~~~~~~~~~~~~~i~~l~~~~~~vdgiIi~~~~~~~~~~~~   81 (332)
T 2rjo_A            4 GQTTLACSFRSLTNPYYTAFNKGAQSFAKSVGLP--YVPLTTEGSSEKGIADIRALLQKTGGNLVLNVDPNDSADARVIV   81 (332)
T ss_dssp             CCCEEEEEESCTTSHHHHHHHHHHHHHHHHHTCC--EEEEECTTCHHHHHHHHHHHHHHTTTCEEEEECCSSHHHHHHHH
T ss_pred             CccEEEEEecCCCcHHHHHHHHHHHHHHHHcCCE--EEEecCCCCHHHHHHHHHHHHHCCCCCCEEEEeCCCHHHHHHHH
Confidence            346899999776652   4556677778889875  555667777888888888887788  988887655443333333


Q ss_pred             hh--ccCCcEEEecC
Q 028883          132 AA--NSQILVIRVPL  144 (202)
Q Consensus       132 A~--~T~~PVIgVP~  144 (202)
                      .-  ....|||.+-.
T Consensus        82 ~~~~~~~iPvV~~~~   96 (332)
T 2rjo_A           82 EACSKAGAYVTTIWN   96 (332)
T ss_dssp             HHHHHHTCEEEEESC
T ss_pred             HHHHHCCCeEEEECC
Confidence            32  35689988743

>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}

Probab=91.46  E-value=3.2  Score=34.58  Aligned_cols=82  Identities=12%  Similarity=0.073  Sum_probs=57.5

Q ss_pred             CCCeEEEEecCCCC---HHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhh-
Q 028883           57 DAPIVGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAA-  132 (202)
Q Consensus        57 ~~~~V~IimGS~SD---~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA-  132 (202)
                      +...|+++..+.++   ..+.+.+.+.++++|+  ++.+...+..+++..++++.+..++++-||........  ..+. 
T Consensus        67 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~--~~~~~~~~~~~~~~~~~i~~l~~~~vdGiIi~~~~~~~--~~~~~  142 (344)
T 3kjx_A           67 RVNLVAVIIPSLSNMVFPEVLTGINQVLEDTEL--QPVVGVTDYLPEKEEKVLYEMLSWRPSGVIIAGLEHSE--AARAM  142 (344)
T ss_dssp             CCSEEEEEESCSSSSSHHHHHHHHHHHHTSSSS--EEEEEECTTCHHHHHHHHHHHHTTCCSEEEEECSCCCH--HHHHH
T ss_pred             CCCEEEEEeCCCCcHHHHHHHHHHHHHHHHCCC--EEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEECCCCCH--HHHHH
Confidence            34689999987766   4556667777777775  66777888899999999998888888876665432221  2222 


Q ss_pred             -hccCCcEEEe
Q 028883          133 -ANSQILVIRV  142 (202)
Q Consensus       133 -~~T~~PVIgV  142 (202)
                       .....||+-+
T Consensus       143 l~~~~iPvV~i  153 (344)
T 3kjx_A          143 LDAAGIPVVEI  153 (344)
T ss_dssp             HHHCSSCEEEE
T ss_pred             HHhCCCCEEEE
Confidence             2357899876

>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*

Probab=91.15  E-value=5.4  Score=32.53  Aligned_cols=83  Identities=16%  Similarity=0.151  Sum_probs=54.6

Q ss_pred             CeEEEEecCCCC--HHHHHHHHHHHHHhCCCeEEEEEc-cCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhh--
Q 028883           59 PIVGIIMESDLD--LPVMNDAARTLSDFGVPYEIKILP-PHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAA--  133 (202)
Q Consensus        59 ~~V~IimGS~SD--~~v~~~a~~~L~~~gi~~ev~V~S-aHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~--  133 (202)
                      .+|+++....++  ....+.+.+.++++|+  ++.+.. .+..+++..++++.+..++++.||........+...+.-  
T Consensus         2 ~~Ig~i~~~~~~~~~~~~~gi~~~~~~~g~--~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~   79 (313)
T 2h3h_A            2 LTIGVIGKSVHPYWSQVEQGVKAAGKALGV--DTKFFVPQKEDINAQLQMLESFIAEGVNGIAIAPSDPTAVIPTIKKAL   79 (313)
T ss_dssp             CEEEEECSCSSHHHHHHHHHHHHHHHHHTC--EEEEECCSSSCHHHHHHHHHHHHHTTCSEEEECCSSTTTTHHHHHHHH
T ss_pred             eEEEEEeCCCcHHHHHHHHHHHHHHHHcCC--EEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChHHHHHHHHHHH
Confidence            368888766554  2344556667788886  455543 366788888888888788899888766555444334432  


Q ss_pred             ccCCcEEEec
Q 028883          134 NSQILVIRVP  143 (202)
Q Consensus       134 ~T~~PVIgVP  143 (202)
                      ....|||.+=
T Consensus        80 ~~~iPvV~~~   89 (313)
T 2h3h_A           80 EMGIPVVTLD   89 (313)
T ss_dssp             HTTCCEEEES
T ss_pred             HCCCeEEEeC
Confidence            3578998763

>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4

Probab=91.06  E-value=1.7  Score=32.95  Aligned_cols=71  Identities=15%  Similarity=0.184  Sum_probs=48.4

Q ss_pred             HHHHHHHHHHHHhCCC-eEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhh--------hhhccCCcEEEe
Q 028883           72 PVMNDAARTLSDFGVP-YEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGV--------AAANSQILVIRV  142 (202)
Q Consensus        72 ~v~~~a~~~L~~~gi~-~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~Lpgv--------vA~~T~~PVIgV  142 (202)
                      ..++++.+.++..|++ ++..+..-  .|  ..++++.+++.+++.||.++-+...+...        +.-+++.||+-|
T Consensus        81 ~~l~~~~~~~~~~gv~~v~~~v~~G--~~--~~~I~~~a~~~~~DLIV~G~~g~~~~~~~~lGSva~~vl~~a~~PVlvV  156 (163)
T 1tq8_A           81 EILHDAKERAHNAGAKNVEERPIVG--AP--VDALVNLADEEKADLLVVGNVGLSTIAGRLLGSVPANVSRRAKVDVLIV  156 (163)
T ss_dssp             HHHHHHHHHHHTTTCCEEEEEEECS--SH--HHHHHHHHHHTTCSEEEEECCCCCSHHHHHTBBHHHHHHHHTTCEEEEE
T ss_pred             HHHHHHHHHHHHcCCCeEEEEEecC--CH--HHHHHHHHHhcCCCEEEECCCCCCcccceeeccHHHHHHHhCCCCEEEE
Confidence            4456667777778998 88777642  33  45566666677899888887665555543        334578999999


Q ss_pred             cCCC
Q 028883          143 PLLS  146 (202)
Q Consensus       143 P~~~  146 (202)
                      |...
T Consensus       157 ~~~~  160 (163)
T 1tq8_A          157 HTTE  160 (163)
T ss_dssp             CCC-
T ss_pred             eCCC
Confidence            8654

>1jx6_A LUXP protein; protein-ligand complex, signaling protein; HET: AI2; 1.50A {Vibrio harveyi} SCOP: c.93.1.1 PDB: 1zhh_A* 2hj9_A*

Probab=91.02  E-value=5.8  Score=32.69  Aligned_cols=85  Identities=7%  Similarity=0.096  Sum_probs=57.6

Q ss_pred             CCCeEEEEecC-CCC---HHHHHHHHHHHHHhCCCeEEEEEccC--CCchHHHHHHHHHhhcCceEEEEecCCcCchhhh
Q 028883           57 DAPIVGIIMES-DLD---LPVMNDAARTLSDFGVPYEIKILPPH--QNCKEALSYALSAKERGIKIIIVGDGVEAHLSGV  130 (202)
Q Consensus        57 ~~~~V~IimGS-~SD---~~v~~~a~~~L~~~gi~~ev~V~SaH--Rtp~~l~~~~~~~~~~g~~ViIa~AG~aa~Lpgv  130 (202)
                      +...|++++.+ .++   ....+.+.+.+++.|..+.+.++..+  ..+++..++++.+..++++.||. .+........
T Consensus        42 ~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi-~~~~~~~~~~  120 (342)
T 1jx6_A           42 RPIKISVVYPGQQVSDYWVRNIASFEKRLYKLNINYQLNQVFTRPNADIKQQSLSLMEALKSKSDYLIF-TLDTTRHRKF  120 (342)
T ss_dssp             SCEEEEEEECCCSSCCHHHHHHHHHHHHHHHTTCCEEEEEEECCTTCCHHHHHHHHHHHHHTTCSEEEE-CCSSSTTHHH
T ss_pred             CceEEEEEecCCcccHHHHHHHHHHHHHHHHcCCeEEEEecCCCCccCHHHHHHHHHHHHhcCCCEEEE-eCChHhHHHH
Confidence            34679999876 333   24667778888999988777765566  57777778888887888987777 5544433333


Q ss_pred             hhh--ccCCcEEEe
Q 028883          131 AAA--NSQILVIRV  142 (202)
Q Consensus       131 vA~--~T~~PVIgV  142 (202)
                      +.-  ....|||.+
T Consensus       121 ~~~~~~~~ip~V~~  134 (342)
T 1jx6_A          121 VEHVLDSTNTKLIL  134 (342)
T ss_dssp             HHHHHHHCSCEEEE
T ss_pred             HHHHHHcCCCEEEE
Confidence            322  235787755

>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}

Probab=91.01  E-value=5  Score=31.95  Aligned_cols=84  Identities=11%  Similarity=0.102  Sum_probs=57.0

Q ss_pred             CCeEEEEecCCC--CH---HHHHHHHHHHHHhCCCeEEEEEcc--CCCchHHHHHHHHHhhcCceEEEEecCCcCchhhh
Q 028883           58 APIVGIIMESDL--DL---PVMNDAARTLSDFGVPYEIKILPP--HQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGV  130 (202)
Q Consensus        58 ~~~V~IimGS~S--D~---~v~~~a~~~L~~~gi~~ev~V~Sa--HRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~Lpgv  130 (202)
                      ..+|++++.+.+  |-   ...+.+.+.+++.|+  ++.+...  +..+++..++++.+..++++.||........+...
T Consensus         5 ~~~Ig~v~~~~~~~~~~~~~~~~gi~~~a~~~g~--~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~~~~~~~   82 (289)
T 3brs_A            5 QYYMICIPKVLDDSSDFWSVLVEGAQMAAKEYEI--KLEFMAPEKEEDYLVQNELIEEAIKRKPDVILLAAADYEKTYDA   82 (289)
T ss_dssp             CCEEEEECSCCCSSSHHHHHHHHHHHHHHHHHTC--EEEECCCSSTTCHHHHHHHHHHHHHTCCSEEEECCSCTTTTHHH
T ss_pred             CcEEEEEeCCCCCCchHHHHHHHHHHHHHHHcCC--EEEEecCCCCCCHHHHHHHHHHHHHhCCCEEEEeCCChHHhHHH
Confidence            467999987665  42   344566677788885  5666555  67788888888888888898888776555544334


Q ss_pred             hhh--ccCCcEEEec
Q 028883          131 AAA--NSQILVIRVP  143 (202)
Q Consensus       131 vA~--~T~~PVIgVP  143 (202)
                      +.-  ....|||.+=
T Consensus        83 ~~~~~~~~iPvV~~~   97 (289)
T 3brs_A           83 AKEIKDAGIKLIVID   97 (289)
T ss_dssp             HTTTGGGTCEEEEES
T ss_pred             HHHHHHCCCcEEEEC
Confidence            332  3568998763

>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}

Probab=90.93  E-value=1.7  Score=34.71  Aligned_cols=80  Identities=9%  Similarity=0.054  Sum_probs=53.3

Q ss_pred             CCCeEEEEecCCCC---HHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhh
Q 028883           57 DAPIVGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAA  133 (202)
Q Consensus        57 ~~~~V~IimGS~SD---~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~  133 (202)
                      +...|++++.+.++   ..+.+.+.+.+++.|+  ++.+...+ .++...++++.+..++++.|| ..... . ...+..
T Consensus         4 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~--~~~~~~~~-~~~~~~~~~~~l~~~~vdgiI-~~~~~-~-~~~~~~   77 (280)
T 3gyb_A            4 RTQLIAVLIDDYSNPWFIDLIQSLSDVLTPKGY--RLSVIDSL-TSQAGTDPITSALSMRPDGII-IAQDI-P-DFTVPD   77 (280)
T ss_dssp             CCCEEEEEESCTTSGGGHHHHHHHHHHHGGGTC--EEEEECSS-SSCSSSCHHHHHHTTCCSEEE-EESCC---------
T ss_pred             ccCEEEEEeCCCCChHHHHHHHHHHHHHHHCCC--EEEEEeCC-CchHHHHHHHHHHhCCCCEEE-ecCCC-C-hhhHhh
Confidence            34689999988776   5667777778888885  67777887 887777788888788899888 43322 2 223333


Q ss_pred             ccCCcEEEec
Q 028883          134 NSQILVIRVP  143 (202)
Q Consensus       134 ~T~~PVIgVP  143 (202)
                       ...|||.+=
T Consensus        78 -~~iPvV~~~   86 (280)
T 3gyb_A           78 -SLPPFVIAG   86 (280)
T ss_dssp             --CCCEEEES
T ss_pred             -cCCCEEEEC
Confidence             677887653

>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}

Probab=90.75  E-value=4.9  Score=31.57  Aligned_cols=83  Identities=14%  Similarity=0.171  Sum_probs=58.3

Q ss_pred             CeEEEEecCCCC---HHHHHHHHHHHHHhCCCeEEEEEc--cCCCchHHHHHHHHHhhcC-ceEEEEecCCcCchhhhhh
Q 028883           59 PIVGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILP--PHQNCKEALSYALSAKERG-IKIIIVGDGVEAHLSGVAA  132 (202)
Q Consensus        59 ~~V~IimGS~SD---~~v~~~a~~~L~~~gi~~ev~V~S--aHRtp~~l~~~~~~~~~~g-~~ViIa~AG~aa~LpgvvA  132 (202)
                      ++|+++.-+.++   ....+.+.+.++++|+.  +.+..  .+..+++..+.++.+..++ ++.||............+.
T Consensus         1 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~--~~~~~~~~~~~~~~~~~~i~~l~~~~~vdgii~~~~~~~~~~~~~~   78 (276)
T 3ksm_A            1 PKLLLVLKGDSNAYWRQVYLGAQKAADEAGVT--LLHRSTKDDGDIAGQIQILSYHLSQAPPDALILAPNSAEDLTPSVA   78 (276)
T ss_dssp             CEEEEECSCSSSTHHHHHHHHHHHHHHHHTCE--EEECCCSSTTCHHHHHHHHHHHHHHSCCSEEEECCSSTTTTHHHHH
T ss_pred             CeEEEEeCCCCChHHHHHHHHHHHHHHHcCCE--EEEECCCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCHHHHHHHHH
Confidence            368888877665   34566777788889874  44555  6678888888888888888 9888877644444444443


Q ss_pred             h--ccCCcEEEec
Q 028883          133 A--NSQILVIRVP  143 (202)
Q Consensus       133 ~--~T~~PVIgVP  143 (202)
                      -  ....||+.+-
T Consensus        79 ~~~~~~ipvV~~~   91 (276)
T 3ksm_A           79 QYRARNIPVLVVD   91 (276)
T ss_dssp             HHHHTTCCEEEES
T ss_pred             HHHHCCCcEEEEe
Confidence            3  3578999874

>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}

Probab=90.64  E-value=5.8  Score=32.03  Aligned_cols=81  Identities=6%  Similarity=0.039  Sum_probs=51.5

Q ss_pred             CCCeEEEEecCCCCH---HHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhh
Q 028883           57 DAPIVGIIMESDLDL---PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAA  133 (202)
Q Consensus        57 ~~~~V~IimGS~SD~---~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~  133 (202)
                      +...|+++. +.++-   .+.+.+.+.+++.|+  ++.+...+..++ -.++++.+..++++-||........ + .+..
T Consensus        11 ~~~~Igvi~-~~~~~~~~~~~~gi~~~a~~~g~--~~~~~~~~~~~~-~~~~~~~l~~~~vdgiIi~~~~~~~-~-~~~~   84 (289)
T 3k9c_A           11 SSRLLGVVF-ELQQPFHGDLVEQIYAAATRRGY--DVMLSAVAPSRA-EKVAVQALMRERCEAAILLGTRFDT-D-ELGA   84 (289)
T ss_dssp             --CEEEEEE-ETTCHHHHHHHHHHHHHHHHTTC--EEEEEEEBTTBC-HHHHHHHHTTTTEEEEEEETCCCCH-H-HHHH
T ss_pred             CCCEEEEEE-ecCCchHHHHHHHHHHHHHHCCC--EEEEEeCCCCHH-HHHHHHHHHhCCCCEEEEECCCCCH-H-HHHH
Confidence            346899999 55552   345566777788885  666666666666 6677778877888877776544332 2 2221


Q ss_pred             -ccCCcEEEec
Q 028883          134 -NSQILVIRVP  143 (202)
Q Consensus       134 -~T~~PVIgVP  143 (202)
                       ....|||-+=
T Consensus        85 ~~~~iPvV~i~   95 (289)
T 3k9c_A           85 LADRVPALVVA   95 (289)
T ss_dssp             HHTTSCEEEES
T ss_pred             HHcCCCEEEEc
Confidence             1278988753

>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}

Probab=90.60  E-value=5.5  Score=31.75  Aligned_cols=88  Identities=9%  Similarity=0.053  Sum_probs=60.9

Q ss_pred             CCCeEEEEecCC-CC---HHHHHHHHHHHHHh-CCCeEEEEE-ccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhh
Q 028883           57 DAPIVGIIMESD-LD---LPVMNDAARTLSDF-GVPYEIKIL-PPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGV  130 (202)
Q Consensus        57 ~~~~V~IimGS~-SD---~~v~~~a~~~L~~~-gi~~ev~V~-SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~Lpgv  130 (202)
                      +..+|++++-.. ++   ..+.+.+.+.+++. |....+... ..+..+++..++++.+..++++.||............
T Consensus         7 ~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~   86 (304)
T 3gbv_A            7 KKYTFACLLPKHLEGEYWTDVQKGIREAVTTYSDFNISANITHYDPYDYNSFVATSQAVIEEQPDGVMFAPTVPQYTKGF   86 (304)
T ss_dssp             CCEEEEEEEECCCTTSHHHHHHHHHHHHHHHTGGGCEEEEEEEECSSCHHHHHHHHHHHHTTCCSEEEECCSSGGGTHHH
T ss_pred             CcceEEEEecCCCCchHHHHHHHHHHHHHHHHHhCCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCEEEECCCChHHHHHH
Confidence            446799988776 33   34455667777788 877777665 3567888888888888888899888776554444444


Q ss_pred             hhh--ccCCcEEEecC
Q 028883          131 AAA--NSQILVIRVPL  144 (202)
Q Consensus       131 vA~--~T~~PVIgVP~  144 (202)
                      +.-  ....|||.+-.
T Consensus        87 ~~~~~~~~iPvV~~~~  102 (304)
T 3gbv_A           87 TDALNELGIPYIYIDS  102 (304)
T ss_dssp             HHHHHHHTCCEEEESS
T ss_pred             HHHHHHCCCeEEEEeC
Confidence            433  34789987653

>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}

Probab=90.60  E-value=4.2  Score=32.75  Aligned_cols=82  Identities=5%  Similarity=0.038  Sum_probs=54.0

Q ss_pred             CCeEEEEecC-C---CC---HHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhh
Q 028883           58 APIVGIIMES-D---LD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGV  130 (202)
Q Consensus        58 ~~~V~IimGS-~---SD---~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~Lpgv  130 (202)
                      ...|++++-. .   ++   ....+.+.+.+++.|.  ++.+......+++..++++.+..++++.||........  ..
T Consensus         4 s~~Ig~i~~~~~~~~~~~~~~~~~~gi~~~a~~~g~--~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~--~~   79 (287)
T 3bbl_A            4 SFMIGYSWTQTEPGQVNHILDQFLSSMVREAGAVNY--FVLPFPFSEDRSQIDIYRDLIRSGNVDGFVLSSINYND--PR   79 (287)
T ss_dssp             CCEEEECCCCCCTTCSCCTHHHHHHHHHHHHHHTTC--EEEECCCCSSTTCCHHHHHHHHTTCCSEEEECSCCTTC--HH
T ss_pred             eeEEEEEecccccccCChhHHHHHHHHHHHHHHcCC--EEEEEeCCCchHHHHHHHHHHHcCCCCEEEEeecCCCc--HH
Confidence            3578888765 3   33   4566777888888885  56666666677766777777777888877776543222  12


Q ss_pred             hh--hccCCcEEEec
Q 028883          131 AA--ANSQILVIRVP  143 (202)
Q Consensus       131 vA--~~T~~PVIgVP  143 (202)
                      +.  .....|||.+=
T Consensus        80 ~~~l~~~~iPvV~~~   94 (287)
T 3bbl_A           80 VQFLLKQKFPFVAFG   94 (287)
T ss_dssp             HHHHHHTTCCEEEES
T ss_pred             HHHHHhcCCCEEEEC
Confidence            21  23578998763

>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}

Probab=90.55  E-value=3.3  Score=34.55  Aligned_cols=77  Identities=13%  Similarity=0.106  Sum_probs=53.5

Q ss_pred             CCCeEEEEecCCCCH---HHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhh
Q 028883           57 DAPIVGIIMESDLDL---PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAA  133 (202)
Q Consensus        57 ~~~~V~IimGS~SD~---~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~  133 (202)
                      +...|+++..+.+|-   .+.+.+.+.+++.|.  ++.+...+. +++..++++.+..++++-||....    +-  -..
T Consensus        63 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~--~~~~~~~~~-~~~~~~~~~~l~~~~vdGiIi~~~----~~--~~~  133 (333)
T 3jvd_A           63 RSALVGVIVPDLSNEYYSESLQTIQQDLKAAGY--QMLVAEANS-VQAQDVVMESLISIQAAGIIHVPV----VG--SIA  133 (333)
T ss_dssp             -CCEEEEEESCSSSHHHHHHHHHHHHHHHHHTC--EEEEEECCS-HHHHHHHHHHHHHHTCSEEEECCC----TT--CCC
T ss_pred             CCCEEEEEeCCCcChHHHHHHHHHHHHHHHCCC--EEEEECCCC-hHHHHHHHHHHHhCCCCEEEEcch----HH--HHh
Confidence            446899999887763   456677778888885  666777777 888888888888888887776544    11  112


Q ss_pred             ccCCcEEEe
Q 028883          134 NSQILVIRV  142 (202)
Q Consensus       134 ~T~~PVIgV  142 (202)
                      ....|||-+
T Consensus       134 ~~~iPvV~~  142 (333)
T 3jvd_A          134 PEGIPMVQL  142 (333)
T ss_dssp             -CCSCEEEE
T ss_pred             hCCCCEEEE
Confidence            346787765

>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP COM transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A

Probab=90.53  E-value=0.57  Score=40.44  Aligned_cols=85  Identities=16%  Similarity=0.103  Sum_probs=60.8

Q ss_pred             CeEEEEecCCCC----HHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhhc
Q 028883           59 PIVGIIMESDLD----LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAAN  134 (202)
Q Consensus        59 ~~V~IimGS~SD----~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~~  134 (202)
                      .++.||.=..|.    ....+++...|++.|+.+++....   .+....++++++..+++++||+ +|+.+.+--++.++
T Consensus        25 ~~i~vI~NP~sg~~~~~~~~~~i~~~L~~~g~~~~~~~t~---~~~~a~~~~~~~~~~~~d~vvv-~GGDGTv~~v~~~l  100 (337)
T 2qv7_A           25 KRARIIYNPTSGKEQFKRELPDALIKLEKAGYETSAYATE---KIGDATLEAERAMHENYDVLIA-AGGDGTLNEVVNGI  100 (337)
T ss_dssp             EEEEEEECTTSTTSCHHHHHHHHHHHHHHTTEEEEEEECC---STTHHHHHHHHHTTTTCSEEEE-EECHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCCchHHHHHHHHHHHHHcCCeEEEEEec---CcchHHHHHHHHhhcCCCEEEE-EcCchHHHHHHHHH
Confidence            457777644442    467789999999999877765432   3345667777776667776665 68888888888777


Q ss_pred             ----cCCcEEEecCCCC
Q 028883          135 ----SQILVIRVPLLSE  147 (202)
Q Consensus       135 ----T~~PVIgVP~~~~  147 (202)
                          +..|+..+|.-+.
T Consensus       101 ~~~~~~~pl~iIP~GT~  117 (337)
T 2qv7_A          101 AEKPNRPKLGVIPMGTV  117 (337)
T ss_dssp             TTCSSCCEEEEEECSSC
T ss_pred             HhCCCCCcEEEecCCcH
Confidence                6789999998654

>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}

Probab=90.46  E-value=6  Score=31.96  Aligned_cols=84  Identities=18%  Similarity=0.176  Sum_probs=59.9

Q ss_pred             CeEEEEecCCCCH---HHHHHHHHHHHHhCCCeEEEEEccC--CCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhh
Q 028883           59 PIVGIIMESDLDL---PVMNDAARTLSDFGVPYEIKILPPH--QNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAA  133 (202)
Q Consensus        59 ~~V~IimGS~SD~---~v~~~a~~~L~~~gi~~ev~V~SaH--Rtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~  133 (202)
                      .+|++++.+.++-   .+.+.+.+.++++|+  ++.+....  ..+++..++++.+..++++.||........+...+.-
T Consensus         4 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~--~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~~~~   81 (297)
T 3rot_A            4 DKYYLITHGSQDPYWTSLFQGAKKAAEELKV--DLQILAPPGANDVPKQVQFIESALATYPSGIATTIPSDTAFSKSLQR   81 (297)
T ss_dssp             CEEEEECSCCCSHHHHHHHHHHHHHHHHHTC--EEEEECCSSSCCHHHHHHHHHHHHHTCCSEEEECCCCSSTTHHHHHH
T ss_pred             EEEEEEecCCCCchHHHHHHHHHHHHHHhCc--EEEEECCCCcCCHHHHHHHHHHHHHcCCCEEEEeCCCHHHHHHHHHH
Confidence            5799998877553   344556677788885  56666665  6889888999998888999888776666655555533


Q ss_pred             --ccCCcEEEecC
Q 028883          134 --NSQILVIRVPL  144 (202)
Q Consensus       134 --~T~~PVIgVP~  144 (202)
                        ....|||.+=.
T Consensus        82 ~~~~giPvV~~~~   94 (297)
T 3rot_A           82 ANKLNIPVIAVDT   94 (297)
T ss_dssp             HHHHTCCEEEESC
T ss_pred             HHHCCCCEEEEcC
Confidence              35789987643

>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}

Probab=90.41  E-value=5.9  Score=31.80  Aligned_cols=81  Identities=10%  Similarity=0.107  Sum_probs=54.7

Q ss_pred             CCCeEEEEecCCCC---HHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCc--Cchhhhh
Q 028883           57 DAPIVGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVE--AHLSGVA  131 (202)
Q Consensus        57 ~~~~V~IimGS~SD---~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~a--a~Lpgvv  131 (202)
                      +...|++++...++   ....+.+.+.+++.|+  ++.+......+++..++++.+..++++-||......  ..+. .+
T Consensus         7 ~~~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~-~l   83 (285)
T 3c3k_A            7 KTGMLLVMVSNIANPFCAAVVKGIEKTAEKNGY--RILLCNTESDLARSRSCLTLLSGKMVDGVITMDALSELPELQ-NI   83 (285)
T ss_dssp             CCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTC--EEEEEECTTCHHHHHHHTHHHHTTCCSEEEECCCGGGHHHHH-HH
T ss_pred             CCCEEEEEeCCCCCchHHHHHHHHHHHHHHcCC--EEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEeCCCCChHHHH-HH
Confidence            34689999976655   2455666777788885  555666777788878888888788888777765432  1222 12


Q ss_pred             hhccCCcEEEe
Q 028883          132 AANSQILVIRV  142 (202)
Q Consensus       132 A~~T~~PVIgV  142 (202)
                      .  ...||+.+
T Consensus        84 ~--~~iPvV~~   92 (285)
T 3c3k_A           84 I--GAFPWVQC   92 (285)
T ss_dssp             H--TTSSEEEE
T ss_pred             h--cCCCEEEE
Confidence            2  67898876

>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes}

Probab=90.37  E-value=1.2  Score=31.92  Aligned_cols=64  Identities=16%  Similarity=0.165  Sum_probs=39.7

Q ss_pred             HHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhh-------hhccCCcEEEec
Q 028883           74 MNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVA-------AANSQILVIRVP  143 (202)
Q Consensus        74 ~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~Lpgvv-------A~~T~~PVIgVP  143 (202)
                      .+++.+.+++.|++++..+..-  .|  ...+.+.++  +++.||.++-+.+.+..++       .-+++.||+-||
T Consensus        68 l~~~~~~~~~~g~~~~~~v~~g--~~--~~~I~~~a~--~~dliV~G~~~~~~~~~~~Gs~~~~vl~~~~~pVlvv~  138 (138)
T 3idf_A           68 TQKFSTFFTEKGINPFVVIKEG--EP--VEMVLEEAK--DYNLLIIGSSENSFLNKIFASHQDDFIQKAPIPVLIVK  138 (138)
T ss_dssp             HHHHHHHHHTTTCCCEEEEEES--CH--HHHHHHHHT--TCSEEEEECCTTSTTSSCCCCTTCHHHHHCSSCEEEEC
T ss_pred             HHHHHHHHHHCCCCeEEEEecC--Ch--HHHHHHHHh--cCCEEEEeCCCcchHHHHhCcHHHHHHhcCCCCEEEeC
Confidence            3444555566799988777653  22  344444444  6898888876555554433       335678888776

>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}

Probab=90.35  E-value=3.3  Score=33.66  Aligned_cols=83  Identities=18%  Similarity=0.159  Sum_probs=56.9

Q ss_pred             CeEEEEecCCCCH---HHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhh--
Q 028883           59 PIVGIIMESDLDL---PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAA--  133 (202)
Q Consensus        59 ~~V~IimGS~SD~---~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~--  133 (202)
                      .+|++++.+.++.   ...+.+.+.+++.|+  ++.+......+++..++++.+..++++-||........+...+.-  
T Consensus         3 ~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~--~l~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~   80 (306)
T 2vk2_A            3 LTVGFSQVGSESGWRAAETNVAKSEAEKRGI--TLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAK   80 (306)
T ss_dssp             CEEEEEECCCCSHHHHHHHHHHHHHHHHHTC--EEEEEECTTCHHHHHHHHHHHHHHTCSEEEECCSSSSSCHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHHHHHHHcCC--EEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhhHHHHHHHHH
Confidence            4799999876652   344556778888986  556667777888888888888778888777765444333333332  


Q ss_pred             ccCCcEEEec
Q 028883          134 NSQILVIRVP  143 (202)
Q Consensus       134 ~T~~PVIgVP  143 (202)
                      ....|||.+-
T Consensus        81 ~~~iPvV~~~   90 (306)
T 2vk2_A           81 DAEIPVFLLD   90 (306)
T ss_dssp             HTTCCEEEES
T ss_pred             HCCCCEEEec
Confidence            3568998764

>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*

Probab=90.32  E-value=3.2  Score=33.32  Aligned_cols=84  Identities=10%  Similarity=0.017  Sum_probs=58.1

Q ss_pred             CeEEEEecCCCCH---HHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhh--
Q 028883           59 PIVGIIMESDLDL---PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAA--  133 (202)
Q Consensus        59 ~~V~IimGS~SD~---~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~--  133 (202)
                      .+|++++-..++-   ...+.+.+.+++.|. +++.+...+..+++..++++.+..++++.||............+.-  
T Consensus         3 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~~~~~~~~~~~~   81 (309)
T 2fvy_A            3 TRIGVTIYKYDDNFMSVVRKAIEQDAKAAPD-VQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKAR   81 (309)
T ss_dssp             EEEEEEESCTTSHHHHHHHHHHHHHHHTCTT-EEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSSGGGHHHHHHHHH
T ss_pred             cEEEEEeccCCcHHHHHHHHHHHHHHHhcCC-eEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEeCCCcchhHHHHHHHH
Confidence            4789998766552   345566667777875 3777777788888888888888888898888765544444444432  


Q ss_pred             ccCCcEEEec
Q 028883          134 NSQILVIRVP  143 (202)
Q Consensus       134 ~T~~PVIgVP  143 (202)
                      ....|||.+-
T Consensus        82 ~~~iPvV~~~   91 (309)
T 2fvy_A           82 GQNVPVVFFN   91 (309)
T ss_dssp             TTTCCEEEES
T ss_pred             HCCCcEEEec
Confidence            3568998764

>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*

Probab=90.30  E-value=1.7  Score=32.80  Aligned_cols=68  Identities=15%  Similarity=0.031  Sum_probs=43.0

Q ss_pred             HHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhh--------hhhhccCCcEEEe
Q 028883           73 VMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSG--------VAAANSQILVIRV  142 (202)
Q Consensus        73 v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~Lpg--------vvA~~T~~PVIgV  142 (202)
                      ..+++.+.+++.|+++++.+.-.+-.|  ...+++.+++.+++.||.++-+.+.+..        -+.-.++.||+-|
T Consensus        79 ~l~~~~~~~~~~g~~~~~~~~v~~G~~--~~~I~~~a~~~~~DLIV~G~~g~~~~~~~~lGSv~~~vl~~a~~PVLvV  154 (155)
T 3dlo_A           79 TLSWAVSIIRKEGAEGEEHLLVRGKEP--PDDIVDFADEVDAIAIVIGIRKRSPTGKLIFGSVARDVILKANKPVICI  154 (155)
T ss_dssp             HHHHHHHHHHHTTCCEEEEEEESSSCH--HHHHHHHHHHTTCSEEEEECCEECTTSCEECCHHHHHHHHHCSSCEEEE
T ss_pred             HHHHHHHHHHhcCCCceEEEEecCCCH--HHHHHHHHHHcCCCEEEECCCCCCCCCCEEeccHHHHHHHhCCCCEEEe
Confidence            344556666778999887654444444  3456666666788988888765444332        2344678888765

>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}

Probab=90.09  E-value=6.3  Score=31.59  Aligned_cols=83  Identities=13%  Similarity=0.101  Sum_probs=54.8

Q ss_pred             CCeEEEEecCCCC---HHHHHHHHHHHHHhCCCeEEEEE-ccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhh-
Q 028883           58 APIVGIIMESDLD---LPVMNDAARTLSDFGVPYEIKIL-PPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAA-  132 (202)
Q Consensus        58 ~~~V~IimGS~SD---~~v~~~a~~~L~~~gi~~ev~V~-SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA-  132 (202)
                      ..+|+++....++   ....+.+.+.++++|  |++.+. ..+..+++..++++.+..++++.||........+...+. 
T Consensus         4 ~~~Ig~i~~~~~~~~~~~~~~g~~~~~~~~g--~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~~~~~~~~~~   81 (303)
T 3d02_A            4 EKTVVNISKVDGMPWFNRMGEGVVQAGKEFN--LNASQVGPSSTDAPQQVKIIEDLIARKVDAITIVPNDANVLEPVFKK   81 (303)
T ss_dssp             CEEEEEECSCSSCHHHHHHHHHHHHHHHHTT--EEEEEECCSSSCHHHHHHHHHHHHHTTCSEEEECCSCHHHHHHHHHH
T ss_pred             ceEEEEEeccCCChHHHHHHHHHHHHHHHcC--CEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEecCChHHHHHHHHH
Confidence            3579999866555   234556667778887  466543 367788888888888888889988876554333322332 


Q ss_pred             -hccCCcEEEe
Q 028883          133 -ANSQILVIRV  142 (202)
Q Consensus       133 -~~T~~PVIgV  142 (202)
                       .....|||.+
T Consensus        82 ~~~~~ipvV~~   92 (303)
T 3d02_A           82 ARDAGIVVLTN   92 (303)
T ss_dssp             HHHTTCEEEEE
T ss_pred             HHHCCCeEEEE
Confidence             2356899876

>3msz_A Glutaredoxin 1; alpha-beta sandwich, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: GSH; 2.05A {Francisella tularensis subsp} PDB: 3lgc_A*

Probab=89.97  E-value=0.37  Score=32.31  Aligned_cols=78  Identities=12%  Similarity=0.017  Sum_probs=48.0

Q ss_pred             eEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhhccCCcE
Q 028883           60 IVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQILV  139 (202)
Q Consensus        60 ~V~IimGS~SD~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~~T~~PV  139 (202)
                      .|.|.+.+  .=|.++++...|++.|++|++.-+..+..+....++.+..   |         ..      .-+....|+
T Consensus         5 ~v~ly~~~--~Cp~C~~~~~~L~~~~i~~~~~~vd~~~~~~~~~el~~~~---g---------~~------~~~~~~vP~   64 (89)
T 3msz_A            5 KVKIYTRN--GCPYCVWAKQWFEENNIAFDETIIDDYAQRSKFYDEMNQS---G---------KV------IFPISTVPQ   64 (89)
T ss_dssp             CEEEEECT--TCHHHHHHHHHHHHTTCCCEEEECCSHHHHHHHHHHHHTT---T---------CC------SSCCCSSCE
T ss_pred             EEEEEEcC--CChhHHHHHHHHHHcCCCceEEEeecCCChhHHHHHHHHh---C---------CC------CCCCCccCE
Confidence            35454433  4599999999999999999887776665555555554311   1         00      001256777


Q ss_pred             EEecCCCCCCChhh-HHHhhc
Q 028883          140 IRVPLLSEDWSEDD-VINSIR  159 (202)
Q Consensus       140 IgVP~~~~~l~G~D-LlS~vq  159 (202)
                      |-+  .+..++|.| +...++
T Consensus        65 i~i--~g~~i~g~~~i~~~~~   83 (89)
T 3msz_A           65 IFI--DDEHIGGFTELKANAD   83 (89)
T ss_dssp             EEE--TTEEEESHHHHHHTHH
T ss_pred             EEE--CCEEEeChHHHHHHHH
Confidence            754  444567777 666554

>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}

Probab=89.93  E-value=0.99  Score=33.24  Aligned_cols=74  Identities=7%  Similarity=-0.061  Sum_probs=50.9

Q ss_pred             CeEEEEecCC---CCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhhcc
Q 028883           59 PIVGIIMESD---LDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANS  135 (202)
Q Consensus        59 ~~V~IimGS~---SD~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~~T  135 (202)
                      ..|.|.|-++   +.=|.+.+|.+.|++.|++|+..=+..  .|+...++.+                       ..+..
T Consensus        16 ~~Vvlf~kg~~~~~~Cp~C~~ak~~L~~~gi~y~~~di~~--d~~~~~~l~~-----------------------~~g~~   70 (111)
T 3zyw_A           16 APCMLFMKGTPQEPRCGFSKQMVEILHKHNIQFSSFDIFS--DEEVRQGLKA-----------------------YSSWP   70 (111)
T ss_dssp             SSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGG--CHHHHHHHHH-----------------------HHTCC
T ss_pred             CCEEEEEecCCCCCcchhHHHHHHHHHHcCCCeEEEECcC--CHHHHHHHHH-----------------------HHCCC
Confidence            4688888655   667999999999999999988653333  3443333322                       12457


Q ss_pred             CCcEEEecCCCCCCChhh-HHHhhc
Q 028883          136 QILVIRVPLLSEDWSEDD-VINSIR  159 (202)
Q Consensus       136 ~~PVIgVP~~~~~l~G~D-LlS~vq  159 (202)
                      +.|+|=+  .+...+|.| |..+.+
T Consensus        71 tvP~ifi--~g~~iGG~d~l~~l~~   93 (111)
T 3zyw_A           71 TYPQLYV--SGELIGGLDIIKELEA   93 (111)
T ss_dssp             SSCEEEE--TTEEEECHHHHHHHHH
T ss_pred             CCCEEEE--CCEEEecHHHHHHHHH
Confidence            7888853  455678888 887776

>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*

Probab=89.87  E-value=6.5  Score=31.40  Aligned_cols=83  Identities=13%  Similarity=0.113  Sum_probs=56.1

Q ss_pred             CeEEEEecCCCC---HHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhh--h
Q 028883           59 PIVGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAA--A  133 (202)
Q Consensus        59 ~~V~IimGS~SD---~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA--~  133 (202)
                      .+|+++....+|   ..+.+.+.+.+++.|+  ++.+....-.+++..++++.+..++++.||........+...+.  .
T Consensus         3 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~~~~~   80 (290)
T 2fn9_A            3 GKMAIVISTLNNPWFVVLAETAKQRAEQLGY--EATIFDSQNDTAKESAHFDAIIAAGYDAIIFNPTDADGSIANVKRAK   80 (290)
T ss_dssp             CEEEEEESCSSSHHHHHHHHHHHHHHHHTTC--EEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSCTTTTHHHHHHHH
T ss_pred             eEEEEEeCCCCChHHHHHHHHHHHHHHHcCC--EEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEecCChHHHHHHHHHHH
Confidence            478999876555   2345566677788886  55666677778888888888877888887776554444333332  2


Q ss_pred             ccCCcEEEec
Q 028883          134 NSQILVIRVP  143 (202)
Q Consensus       134 ~T~~PVIgVP  143 (202)
                      ....|||.+-
T Consensus        81 ~~~iPvV~~~   90 (290)
T 2fn9_A           81 EAGIPVFCVD   90 (290)
T ss_dssp             HTTCCEEEES
T ss_pred             HCCCeEEEEe
Confidence            3568998763

>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}

Probab=89.85  E-value=2.5  Score=31.59  Aligned_cols=69  Identities=13%  Similarity=0.041  Sum_probs=43.3

Q ss_pred             HHHHHHHHHHhCCCeEE--EEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhh--------hhhhccCCcEEEec
Q 028883           74 MNDAARTLSDFGVPYEI--KILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSG--------VAAANSQILVIRVP  143 (202)
Q Consensus        74 ~~~a~~~L~~~gi~~ev--~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~Lpg--------vvA~~T~~PVIgVP  143 (202)
                      ++++.+.++..|++++.  .+..-    +-...+++.+++.+++.||.++-+...+..        -+.-+++.||+-||
T Consensus        80 l~~~~~~~~~~g~~~~~~~~~~~g----~~~~~I~~~a~~~~~DlIV~G~~g~~~~~~~~~Gsv~~~vl~~~~~PVlvv~  155 (170)
T 2dum_A           80 LQEKAEEVKRAFRAKNVRTIIRFG----IPWDEIVKVAEEENVSLIILPSRGKLSLSHEFLGSTVMRVLRKTKKPVLIIK  155 (170)
T ss_dssp             HHHHHHHHHHHTTCSEEEEEEEEE----CHHHHHHHHHHHTTCSEEEEESCCCCC--TTCCCHHHHHHHHHCSSCEEEEC
T ss_pred             HHHHHHHHHHcCCceeeeeEEecC----ChHHHHHHHHHHcCCCEEEECCCCCCccccceechHHHHHHHhCCCCEEEEc
Confidence            34445555567999887  66532    233455555666778888887765544432        23456899999999


Q ss_pred             CCC
Q 028883          144 LLS  146 (202)
Q Consensus       144 ~~~  146 (202)
                      ...
T Consensus       156 ~~~  158 (170)
T 2dum_A          156 EVD  158 (170)
T ss_dssp             CCC
T ss_pred             cCC
Confidence            764

>2qu7_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus saprophyticus subsp}

Probab=89.76  E-value=6.6  Score=31.40  Aligned_cols=79  Identities=9%  Similarity=0.131  Sum_probs=52.1

Q ss_pred             CCeEEEEecCCCCH---HHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcC--chhhhhh
Q 028883           58 APIVGIIMESDLDL---PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEA--HLSGVAA  132 (202)
Q Consensus        58 ~~~V~IimGS~SD~---~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa--~LpgvvA  132 (202)
                      ...|++++.. ++-   ...+.+.+.+++.|+  ++.+......+++..++++.+..++++.||.......  .+--.  
T Consensus         8 ~~~Igvi~~~-~~~~~~~~~~gi~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~l--   82 (288)
T 2qu7_A            8 SNIIAFIVPD-QNPFFTEVLTEISHECQKHHL--HVAVASSEENEDKQQDLIETFVSQNVSAIILVPVKSKFQMKREW--   82 (288)
T ss_dssp             EEEEEEEESS-CCHHHHHHHHHHHHHHGGGTC--EEEEEECTTCHHHHHHHHHHHHHTTEEEEEECCSSSCCCCCGGG--
T ss_pred             CCEEEEEECC-CCchHHHHHHHHHHHHHHCCC--EEEEEeCCCCHHHHHHHHHHHHHcCccEEEEecCCCChHHHHHh--
Confidence            3579999987 442   344555666677776  5556666778888888888887888887777654322  22211  


Q ss_pred             hccCCcEEEec
Q 028883          133 ANSQILVIRVP  143 (202)
Q Consensus       133 ~~T~~PVIgVP  143 (202)
                        ...|||.+-
T Consensus        83 --~~iPvV~~~   91 (288)
T 2qu7_A           83 --LKIPIMTLD   91 (288)
T ss_dssp             --GGSCEEEES
T ss_pred             --cCCCEEEEe
Confidence              567888764

>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}

Probab=89.73  E-value=5.4  Score=33.47  Aligned_cols=82  Identities=16%  Similarity=0.191  Sum_probs=51.9

Q ss_pred             CCeEEEEecCCCCH---HHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhh--
Q 028883           58 APIVGIIMESDLDL---PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAA--  132 (202)
Q Consensus        58 ~~~V~IimGS~SD~---~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA--  132 (202)
                      ...|+++....++-   .+.+.+.+.+++.|..  +.+...+..+++..++++.+..++++-||.......  ...+.  
T Consensus        66 s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~--~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~--~~~~~~l  141 (348)
T 3bil_A           66 SNTIGVIVPSLINHYFAAMVTEIQSTASKAGLA--TIITNSNEDATTMSGSLEFLTSHGVDGIICVPNEEC--ANQLEDL  141 (348)
T ss_dssp             --CEEEEESCSSSHHHHHHHHHHHHHHHHTTCC--EEEEECTTCHHHHHHHHHHHHHTTCSCEEECCCGGG--HHHHHHH
T ss_pred             CCEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCE--EEEEeCCCCHHHHHHHHHHHHhCCCCEEEEeCCCCC--hHHHHHH
Confidence            35799999766552   4556667777888865  555666777887788888887888886666543322  12222  


Q ss_pred             hccCCcEEEec
Q 028883          133 ANSQILVIRVP  143 (202)
Q Consensus       133 ~~T~~PVIgVP  143 (202)
                      .....||+.+=
T Consensus       142 ~~~~iPvV~i~  152 (348)
T 3bil_A          142 QKQGMPVVLVD  152 (348)
T ss_dssp             HHC-CCEEEES
T ss_pred             HhCCCCEEEEc
Confidence            23568888763

>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A

Probab=89.66  E-value=4.4  Score=32.56  Aligned_cols=82  Identities=17%  Similarity=0.148  Sum_probs=58.6

Q ss_pred             CeEEEEecCCCCH---HHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhh--hh
Q 028883           59 PIVGIIMESDLDL---PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVA--AA  133 (202)
Q Consensus        59 ~~V~IimGS~SD~---~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~Lpgvv--A~  133 (202)
                      .+|+++.-+.++-   .+.+.+.+.++++|+  ++.+... ..+++..++++++..++++.||............+  +.
T Consensus         3 ~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~--~~~~~~~-~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~~~~~~   79 (306)
T 8abp_A            3 LKLGFLVKQPEEPWFQTEWKFADKAGKDLGF--EVIKIAV-PDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKAR   79 (306)
T ss_dssp             EEEEEEESCTTSHHHHHHHHHHHHHHHHHTE--EEEEEEC-CSHHHHHHHHHHHHHTTCCEEEEECSCGGGHHHHHHHHH
T ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHHHcCC--EEEEeCC-CCHHHHHHHHHHHHHcCCCEEEEeCCCchhhHHHHHHHH
Confidence            4789998877663   445566777788885  5566666 48888888899888888998887766555555543  23


Q ss_pred             ccCCcEEEec
Q 028883          134 NSQILVIRVP  143 (202)
Q Consensus       134 ~T~~PVIgVP  143 (202)
                      ....|||.+=
T Consensus        80 ~~~iPvV~~~   89 (306)
T 8abp_A           80 GYDMKVIAVD   89 (306)
T ss_dssp             HTTCEEEEES
T ss_pred             HCCCcEEEeC
Confidence            4578998764

>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}

Probab=89.41  E-value=7.3  Score=31.34  Aligned_cols=84  Identities=8%  Similarity=0.002  Sum_probs=58.6

Q ss_pred             CeEEEEecCCCCH---HHHHHHHHHHHHhCCCeEEEE-EccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhh-
Q 028883           59 PIVGIIMESDLDL---PVMNDAARTLSDFGVPYEIKI-LPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAA-  133 (202)
Q Consensus        59 ~~V~IimGS~SD~---~v~~~a~~~L~~~gi~~ev~V-~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~-  133 (202)
                      .+|+++.-+.++-   ...+.+.+.++++|+  ++.+ ...+..+++..++++.+..++++.||........+...+.- 
T Consensus         5 ~~I~~i~~~~~~~~~~~~~~gi~~~a~~~g~--~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~   82 (305)
T 3g1w_A            5 ETYMMITFQSGMDYWKRCLKGFEDAAQALNV--TVEYRGAAQYDIQEQITVLEQAIAKNPAGIAISAIDPVELTDTINKA   82 (305)
T ss_dssp             CEEEEEESSTTSTHHHHHHHHHHHHHHHHTC--EEEEEECSSSCHHHHHHHHHHHHHHCCSEEEECCSSTTTTHHHHHHH
T ss_pred             ceEEEEEccCCChHHHHHHHHHHHHHHHcCC--EEEEeCCCcCCHHHHHHHHHHHHHhCCCEEEEcCCCHHHHHHHHHHH
Confidence            5788888766552   344566677788886  4555 46788899999999988888899888766555555444433 


Q ss_pred             -ccCCcEEEecC
Q 028883          134 -NSQILVIRVPL  144 (202)
Q Consensus       134 -~T~~PVIgVP~  144 (202)
                       ....|||.+-.
T Consensus        83 ~~~~iPvV~~~~   94 (305)
T 3g1w_A           83 VDAGIPIVLFDS   94 (305)
T ss_dssp             HHTTCCEEEESS
T ss_pred             HHCCCcEEEECC
Confidence             35789987643

>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}

Probab=89.17  E-value=8.6  Score=31.85  Aligned_cols=82  Identities=12%  Similarity=0.132  Sum_probs=58.1

Q ss_pred             CCCeEEEEecCCCC---HHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhh--
Q 028883           57 DAPIVGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVA--  131 (202)
Q Consensus        57 ~~~~V~IimGS~SD---~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~Lpgvv--  131 (202)
                      +...|+++..+.++   ..+.+.+.+.+++.|.  ++.+...+..+++..++++.+..++++-||........  ..+  
T Consensus        61 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~--~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~~~~--~~~~~  136 (339)
T 3h5o_A           61 KSRTVLVLIPSLANTVFLETLTGIETVLDAAGY--QMLIGNSHYDAGQELQLLRAYLQHRPDGVLITGLSHAE--PFERI  136 (339)
T ss_dssp             --CEEEEEESCSTTCTTHHHHHHHHHHHHHTTC--EEEEEECTTCHHHHHHHHHHHHTTCCSEEEEECSCCCT--THHHH
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHHHHHHHCCC--EEEEEeCCCChHHHHHHHHHHHcCCCCEEEEeCCCCCH--HHHHH
Confidence            34679999877665   5677888888899885  66778888899999999999888888866655432221  222  


Q ss_pred             hhccCCcEEEe
Q 028883          132 AANSQILVIRV  142 (202)
Q Consensus       132 A~~T~~PVIgV  142 (202)
                      ......||+-+
T Consensus       137 l~~~~iPvV~~  147 (339)
T 3h5o_A          137 LSQHALPVVYM  147 (339)
T ss_dssp             HHHTTCCEEEE
T ss_pred             HhcCCCCEEEE
Confidence            23457899876

>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0

Probab=89.15  E-value=1  Score=32.59  Aligned_cols=65  Identities=11%  Similarity=0.078  Sum_probs=41.2

Q ss_pred             HHHHHHHHHhCC-CeEEEEEccCCCchHHHHHHH-HHhhcCceEEEEecCCcCchhhh--------hhhccCCcEEEec
Q 028883           75 NDAARTLSDFGV-PYEIKILPPHQNCKEALSYAL-SAKERGIKIIIVGDGVEAHLSGV--------AAANSQILVIRVP  143 (202)
Q Consensus        75 ~~a~~~L~~~gi-~~ev~V~SaHRtp~~l~~~~~-~~~~~g~~ViIa~AG~aa~Lpgv--------vA~~T~~PVIgVP  143 (202)
                      +++.+.+++.|+ +++..+..-    +-..++++ .+++.+++.||.++-+.+.+...        +.-+++.||+-||
T Consensus        72 ~~~~~~~~~~g~~~~~~~~~~g----~~~~~I~~~~a~~~~~dliV~G~~~~~~~~~~~~Gs~~~~vl~~~~~pVlvV~  146 (146)
T 3s3t_A           72 RQRQQFVATTSAPNLKTEISYG----IPKHTIEDYAKQHPEIDLIVLGATGTNSPHRVAVGSTTSYVVDHAPCNVIVIR  146 (146)
T ss_dssp             HHHHHHHTTSSCCCCEEEEEEE----CHHHHHHHHHHHSTTCCEEEEESCCSSCTTTCSSCHHHHHHHHHCSSEEEEEC
T ss_pred             HHHHHHHHhcCCcceEEEEecC----ChHHHHHHHHHhhcCCCEEEECCCCCCCcceEEEcchHHHHhccCCCCEEEeC
Confidence            344445556788 888776543    23445666 56667899888887655544432        3346788998776

>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*

Probab=89.11  E-value=7.7  Score=31.26  Aligned_cols=83  Identities=13%  Similarity=0.144  Sum_probs=55.0

Q ss_pred             CCCeEEEEecCCCC---HHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhh-
Q 028883           57 DAPIVGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAA-  132 (202)
Q Consensus        57 ~~~~V~IimGS~SD---~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA-  132 (202)
                      +...|++++-..+|   ..+.+.+.+.+++.|.  ++.+......+++..++++.+..++++-||.......  ...+. 
T Consensus        15 ~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~--~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~--~~~~~~   90 (289)
T 2fep_A           15 KTTTVGVIIPDISSIFYSELARGIEDIATMYKY--NIILSNSDQNMEKELHLLNTMLGKQVDGIVFMGGNIT--DEHVAE   90 (289)
T ss_dssp             -CCEEEEEESCTTSHHHHHHHHHHHHHHHHTTC--EEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSCCC--HHHHHH
T ss_pred             CCCeEEEEeCCCCCchHHHHHHHHHHHHHHcCC--EEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEecCCCC--HHHHHH
Confidence            34689999976555   2455666777788886  5566677778888888888888888987776553221  12222 


Q ss_pred             -hccCCcEEEec
Q 028883          133 -ANSQILVIRVP  143 (202)
Q Consensus       133 -~~T~~PVIgVP  143 (202)
                       .....|||.+-
T Consensus        91 l~~~~iPvV~~~  102 (289)
T 2fep_A           91 FKRSPVPIVLAA  102 (289)
T ss_dssp             HHHSSSCEEEES
T ss_pred             HHhcCCCEEEEc
Confidence             23568998763

>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}

Probab=89.01  E-value=8.6  Score=31.64  Aligned_cols=84  Identities=17%  Similarity=0.214  Sum_probs=54.5

Q ss_pred             CCCeEEEEecCCCCH---HHHHHHHHHHHHh-CCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhh
Q 028883           57 DAPIVGIIMESDLDL---PVMNDAARTLSDF-GVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAA  132 (202)
Q Consensus        57 ~~~~V~IimGS~SD~---~v~~~a~~~L~~~-gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA  132 (202)
                      +...|++++.. +|-   .+.+.+.+.+++. |+  ++.+...+..++...++++.+..++++.||........+...+.
T Consensus         5 ~~~~Igvi~~~-~~~~~~~~~~gi~~~a~~~~g~--~l~i~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~   81 (325)
T 2x7x_A            5 PHFRIGVAQCS-DDSWRHKMNDEILREAMFYNGV--SVEIRSAGDDNSKQAEDVHYFMDEGVDLLIISANEAAPMTPIVE   81 (325)
T ss_dssp             -CCEEEEEESC-CSHHHHHHHHHHHHHHTTSSSC--EEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSSHHHHHHHHH
T ss_pred             CCeEEEEEecC-CCHHHHHHHHHHHHHHHHcCCc--EEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCHHHHHHHHH
Confidence            34689999977 442   2334455556666 65  66677777888888888888888889888876544333333332


Q ss_pred             h--ccCCcEEEec
Q 028883          133 A--NSQILVIRVP  143 (202)
Q Consensus       133 ~--~T~~PVIgVP  143 (202)
                      -  ....|||.+-
T Consensus        82 ~~~~~~iPvV~~~   94 (325)
T 2x7x_A           82 EAYQKGIPVILVD   94 (325)
T ss_dssp             HHHHTTCCEEEES
T ss_pred             HHHHCCCeEEEeC
Confidence            2  3568998873

>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*

Probab=88.72  E-value=6  Score=32.23  Aligned_cols=86  Identities=21%  Similarity=0.245  Sum_probs=60.9

Q ss_pred             CCCeEEEEecCCCCH---HHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhh
Q 028883           57 DAPIVGIIMESDLDL---PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAA  133 (202)
Q Consensus        57 ~~~~V~IimGS~SD~---~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~  133 (202)
                      +..+|++++-+.++-   ...+.+.+.++++|+  ++.+...+..+++-.++++.+..++++.||...-........+.-
T Consensus         2 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~--~~~~~~~~~~~~~~~~~i~~~~~~~vdgiIi~~~~~~~~~~~~~~   79 (330)
T 3uug_A            2 DKGSVGIAMPTKSSARWIDDGNNIVKQLQEAGY--KTDLQYADDDIPNQLSQIENMVTKGVKVLVIASIDGTTLSDVLKQ   79 (330)
T ss_dssp             CCCEEEEEECCSSSTHHHHHHHHHHHHHHHTTC--EEEEEECTTCHHHHHHHHHHHHHHTCSEEEECCSSGGGGHHHHHH
T ss_pred             CCcEEEEEeCCCcchHHHHHHHHHHHHHHHcCC--EEEEeeCCCCHHHHHHHHHHHHHcCCCEEEEEcCCchhHHHHHHH
Confidence            346899999877652   344556677788886  666777888999988999988888899888766554444444432


Q ss_pred             --ccCCcEEEecC
Q 028883          134 --NSQILVIRVPL  144 (202)
Q Consensus       134 --~T~~PVIgVP~  144 (202)
                        ....|||.+=.
T Consensus        80 ~~~~giPvV~~~~   92 (330)
T 3uug_A           80 AGEQGIKVIAYDR   92 (330)
T ss_dssp             HHHTTCEEEEESS
T ss_pred             HHHCCCCEEEECC
Confidence              35689987643

>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A*

Probab=88.56  E-value=9.2  Score=31.41  Aligned_cols=76  Identities=13%  Similarity=0.167  Sum_probs=42.8

Q ss_pred             ceEEEEecCCcCchhhhhhhccCCcEEEecCCCCCCChhh-HHHhhcCCCCCeeeEEecCChhh--HHHHHHHHHccCCH
Q 028883          114 IKIIIVGDGVEAHLSGVAAANSQILVIRVPLLSEDWSEDD-VINSIRMPSHVQVASVPRNNAKN--AALYAVKVLGIADE  190 (202)
Q Consensus       114 ~~ViIa~AG~aa~LpgvvA~~T~~PVIgVP~~~~~l~G~D-LlS~vqMP~GvpVatV~I~n~~N--AAl~Aa~IL~~~d~  190 (202)
                      ++++|.-+|   .+.-+=|...-+|||..|..+...+-.. .--+++  .|.  +.+  -...+  +.-+|..|..+ |+
T Consensus       255 ad~~v~~sg---~~~~~EAma~G~Pvi~~~~~g~~~~q~~~~~~~~~--~g~--g~~--~~~~d~~~~~la~~i~~l-~~  324 (364)
T 1f0k_A          255 ADVVVCRSG---ALTVSEIAAAGLPALFVPFQHKDRQQYWNALPLEK--AGA--AKI--IEQPQLSVDAVANTLAGW-SR  324 (364)
T ss_dssp             CSEEEECCC---HHHHHHHHHHTCCEEECCCCCTTCHHHHHHHHHHH--TTS--EEE--CCGGGCCHHHHHHHHHTC-CH
T ss_pred             CCEEEECCc---hHHHHHHHHhCCCEEEeeCCCCchhHHHHHHHHHh--CCc--EEE--eccccCCHHHHHHHHHhc-CH
Confidence            467777665   2222335557899999887542111011 112233  343  222  23334  77778888888 99


Q ss_pred             HHHHHHHHH
Q 028883          191 DLLERIRKY  199 (202)
Q Consensus       191 ~l~~kl~~~  199 (202)
                      +.++++.+.
T Consensus       325 ~~~~~~~~~  333 (364)
T 1f0k_A          325 ETLLTMAER  333 (364)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            998887553

>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}

Probab=88.29  E-value=8.3  Score=31.42  Aligned_cols=73  Identities=10%  Similarity=0.051  Sum_probs=53.1

Q ss_pred             CHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhh--------hhccCCcEEE
Q 028883           70 DLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVA--------AANSQILVIR  141 (202)
Q Consensus        70 D~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~Lpgvv--------A~~T~~PVIg  141 (202)
                      .....+++.+.|++.|++++..+..-    +-...+.+.+++.+++.+|.++-+-+.+...+        ...++.||+-
T Consensus       212 ~~~~l~~~~~~l~~~~~~~~~~~~~g----~~~~~I~~~a~~~~~dLlV~G~~~~~~~~~~~~Gs~~~~vl~~~~~pvLv  287 (294)
T 3loq_A          212 KTADLRVMEEVIGAEGIEVHVHIESG----TPHKAILAKREEINATTIFMGSRGAGSVMTMILGSTSESVIRRSPVPVFV  287 (294)
T ss_dssp             CHHHHHHHHHHHHHTTCCEEEEEECS----CHHHHHHHHHHHTTCSEEEEECCCCSCHHHHHHHCHHHHHHHHCSSCEEE
T ss_pred             HHHHHHHHHHHHHHcCCcEEEEEecC----CHHHHHHHHHHhcCcCEEEEeCCCCCCccceeeCcHHHHHHhcCCCCEEE
Confidence            56788888889999999988777543    33445555566677898888887777665543        3467899999


Q ss_pred             ecCCC
Q 028883          142 VPLLS  146 (202)
Q Consensus       142 VP~~~  146 (202)
                      ||...
T Consensus       288 v~~~~  292 (294)
T 3loq_A          288 CKRGD  292 (294)
T ss_dssp             ECSCT
T ss_pred             ECCCC
Confidence            98754

>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}

Probab=88.28  E-value=8.1  Score=30.45  Aligned_cols=80  Identities=9%  Similarity=0.064  Sum_probs=52.8

Q ss_pred             CeEEEEecCCCC---HHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhh--h
Q 028883           59 PIVGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAA--A  133 (202)
Q Consensus        59 ~~V~IimGS~SD---~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA--~  133 (202)
                      ..|+++....+|   ....+.+.+.+++.|+  ++.+......+++..++++.+..++++.||.......  ...+.  .
T Consensus         4 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~~--~~~~~~l~   79 (275)
T 3d8u_A            4 YSIALIIPSLFEKACAHFLPSFQQALNKAGY--QLLLGYSDYSIEQEEKLLSTFLESRPAGVVLFGSEHS--QRTHQLLE   79 (275)
T ss_dssp             CEEEEEESCSSCHHHHHHHHHHHHHHHHTSC--EECCEECTTCHHHHHHHHHHHHTSCCCCEEEESSCCC--HHHHHHHH
T ss_pred             eEEEEEeCCCccccHHHHHHHHHHHHHHCCC--EEEEEcCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCC--HHHHHHHH
Confidence            579999876655   2445566777788886  5555666777888888888888888886665543322  12222  2


Q ss_pred             ccCCcEEEe
Q 028883          134 NSQILVIRV  142 (202)
Q Consensus       134 ~T~~PVIgV  142 (202)
                      ....||+.+
T Consensus        80 ~~~iPvV~~   88 (275)
T 3d8u_A           80 ASNTPVLEI   88 (275)
T ss_dssp             HHTCCEEEE
T ss_pred             hCCCCEEEE
Confidence            357899876

>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4

Probab=88.23  E-value=2.1  Score=32.25  Aligned_cols=69  Identities=13%  Similarity=0.092  Sum_probs=42.1

Q ss_pred             HHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhh--------hhhccCCcEEEecCC
Q 028883           74 MNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGV--------AAANSQILVIRVPLL  145 (202)
Q Consensus        74 ~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~Lpgv--------vA~~T~~PVIgVP~~  145 (202)
                      ++++.+.++..|++++..+..-  .|  ...+++.+++.+++.||.++-+.+.+..+        +.-+++.||+-||..
T Consensus        89 l~~~~~~~~~~g~~~~~~v~~G--~~--~~~I~~~a~~~~~DLIVmG~~g~~~~~~~~~Gsva~~vl~~a~~pVlvv~~~  164 (175)
T 2gm3_A           89 LEFFVNKCHEIGVGCEAWIKTG--DP--KDVICQEVKRVRPDFLVVGSRGLGRFQKVFVGTVSAFCVKHAECPVMTIKRN  164 (175)
T ss_dssp             HHHHHHHHHHHTCEEEEEEEES--CH--HHHHHHHHHHHCCSEEEEEECCCC--------CHHHHHHHHCSSCEEEEECC
T ss_pred             HHHHHHHHHHCCCceEEEEecC--CH--HHHHHHHHHHhCCCEEEEeCCCCChhhhhhcCchHHHHHhCCCCCEEEEcCC
Confidence            3444455566799888776642  23  44556666666788888777655544332        344678999999975


Q ss_pred             C
Q 028883          146 S  146 (202)
Q Consensus       146 ~  146 (202)
                      .
T Consensus       165 ~  165 (175)
T 2gm3_A          165 A  165 (175)
T ss_dssp             G
T ss_pred             c
Confidence            3

>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}

Probab=88.16  E-value=8.5  Score=30.55  Aligned_cols=83  Identities=14%  Similarity=0.110  Sum_probs=59.9

Q ss_pred             CeEEEEecCCCCH---HHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcC---chhhhhh
Q 028883           59 PIVGIIMESDLDL---PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEA---HLSGVAA  132 (202)
Q Consensus        59 ~~V~IimGS~SD~---~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa---~LpgvvA  132 (202)
                      ..|+++..+.+|-   .+.+.+.+.+++.|+  ++.+...+..+++..++++.+..++++-||.......   .....+.
T Consensus        16 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~--~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~~   93 (298)
T 3tb6_A           16 KTIGVLTTYISDYIFPSIIRGIESYLSEQGY--SMLLTSTNNNPDNERRGLENLLSQHIDGLIVEPTKSALQTPNIGYYL   93 (298)
T ss_dssp             CEEEEEESCSSSTTHHHHHHHHHHHHHHTTC--EEEEEECTTCHHHHHHHHHHHHHTCCSEEEECCSSTTSCCTTHHHHH
T ss_pred             ceEEEEeCCCCchHHHHHHHHHHHHHHHCCC--EEEEEeCCCChHHHHHHHHHHHHCCCCEEEEecccccccCCcHHHHH
Confidence            6899999887763   566777788888886  6677788888999889999988889988877654332   2223332


Q ss_pred             --hccCCcEEEec
Q 028883          133 --ANSQILVIRVP  143 (202)
Q Consensus       133 --~~T~~PVIgVP  143 (202)
                        .....|||.+=
T Consensus        94 ~~~~~~iPvV~~~  106 (298)
T 3tb6_A           94 NLEKNGIPFAMIN  106 (298)
T ss_dssp             HHHHTTCCEEEES
T ss_pred             HHHhcCCCEEEEe
Confidence              23578998763

>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}

Probab=88.07  E-value=8.6  Score=30.49  Aligned_cols=83  Identities=8%  Similarity=0.077  Sum_probs=54.7

Q ss_pred             CCCeEEEEecC--CCC---HHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhh
Q 028883           57 DAPIVGIIMES--DLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVA  131 (202)
Q Consensus        57 ~~~~V~IimGS--~SD---~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~Lpgvv  131 (202)
                      +..+|++++..  .++   ....+.+.+.+++.|+  ++.+......+++..++++.+..++++.||........  ..+
T Consensus        18 ~~~~Ig~i~~~~~~~~~~~~~~~~gi~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~~~--~~~   93 (296)
T 3brq_A           18 STQTLGLVVTNTLYHGIYFSELLFHAARMAEEKGR--QLLLADGKHSAEEERQAIQYLLDLRCDAIMIYPRFLSV--DEI   93 (296)
T ss_dssp             -CCEEEEEECGGGCC--CHHHHHHHHHHHHHHTTC--EEEEECCTTSHHHHHHHHHHHHHTTCSEEEEECSSSCH--HHH
T ss_pred             CCceEEEEeCCcccCCchHHHHHHHHHHHHHHCCC--EEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEecCCCCh--HHH
Confidence            34689999876  333   2456667777888886  56667777788888888888877888877776543221  222


Q ss_pred             h--hc-cCCcEEEec
Q 028883          132 A--AN-SQILVIRVP  143 (202)
Q Consensus       132 A--~~-T~~PVIgVP  143 (202)
                      .  .. ...|||.+-
T Consensus        94 ~~l~~~~~iPvV~~~  108 (296)
T 3brq_A           94 DDIIDAHSQPIMVLN  108 (296)
T ss_dssp             HHHHHTCSSCEEEES
T ss_pred             HHHHhcCCCCEEEEc
Confidence            1  22 578988763

>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}

Probab=87.90  E-value=11  Score=31.50  Aligned_cols=82  Identities=10%  Similarity=0.127  Sum_probs=56.6

Q ss_pred             CCCeEEEEecCCCCH---HHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhh-
Q 028883           57 DAPIVGIIMESDLDL---PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAA-  132 (202)
Q Consensus        57 ~~~~V~IimGS~SD~---~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA-  132 (202)
                      +...|++++.+.++-   .+.+.+.+.+++.|+  ++.+...+..+++..++++.+..++++-||........  ..+. 
T Consensus        69 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~--~~~~~~~~~~~~~~~~~~~~l~~~~vdGiI~~~~~~~~--~~~~~  144 (355)
T 3e3m_A           69 RSGFVGLLLPSLNNLHFAQTAQSLTDVLEQGGL--QLLLGYTAYSPEREEQLVETMLRRRPEAMVLSYDGHTE--QTIRL  144 (355)
T ss_dssp             --CEEEEEESCSBCHHHHHHHHHHHHHHHHTTC--EEEEEECTTCHHHHHHHHHHHHHTCCSEEEEECSCCCH--HHHHH
T ss_pred             CCCEEEEEeCCCCchHHHHHHHHHHHHHHHCCC--EEEEEeCCCChHHHHHHHHHHHhCCCCEEEEeCCCCCH--HHHHH
Confidence            346899999887764   345566777778875  66777888899998899988888888866665433221  2222 


Q ss_pred             -hccCCcEEEe
Q 028883          133 -ANSQILVIRV  142 (202)
Q Consensus       133 -~~T~~PVIgV  142 (202)
                       .....||+-+
T Consensus       145 l~~~~iPvV~i  155 (355)
T 3e3m_A          145 LQRASIPIVEI  155 (355)
T ss_dssp             HHHCCSCEEEE
T ss_pred             HHhCCCCEEEE
Confidence             2457899876

>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}

Probab=87.63  E-value=8.1  Score=30.97  Aligned_cols=83  Identities=13%  Similarity=0.124  Sum_probs=43.1

Q ss_pred             CCCeEEEEecCCCC---HHHHHHHHHHHHHhCCCeEEEEE-ccCCCchHHHHHHHHHhhcCceEEEEecCC-cC-chhhh
Q 028883           57 DAPIVGIIMESDLD---LPVMNDAARTLSDFGVPYEIKIL-PPHQNCKEALSYALSAKERGIKIIIVGDGV-EA-HLSGV  130 (202)
Q Consensus        57 ~~~~V~IimGS~SD---~~v~~~a~~~L~~~gi~~ev~V~-SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~-aa-~Lpgv  130 (202)
                      +..+|++++...+|   ....+.+.+.+++.|+  ++.+. .....+++..++++.+..++++.||..... .. .+.- 
T Consensus         7 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~--~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~-   83 (290)
T 3clk_A            7 SSNVIAAVVSSVRTNFAQQILDGIQEEAHKNGY--NLIIVYSGSADPEEQKHALLTAIERPVMGILLLSIALTDDNLQL-   83 (290)
T ss_dssp             -CCEEEEECCCCSSSHHHHHHHHHHHHHHTTTC--EEEEEC----------CHHHHHHSSCCSEEEEESCC----CHHH-
T ss_pred             cCCEEEEEeCCCCChHHHHHHHHHHHHHHHcCC--eEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEecccCCHHHHHH-
Confidence            34689999875544   2455666777778885  56666 555666666677777777888877765433 22 2221 


Q ss_pred             hhhccCCcEEEec
Q 028883          131 AAANSQILVIRVP  143 (202)
Q Consensus       131 vA~~T~~PVIgVP  143 (202)
                      + .....||+.+-
T Consensus        84 l-~~~~iPvV~~~   95 (290)
T 3clk_A           84 L-QSSDVPYCFLS   95 (290)
T ss_dssp             H-HCC--CEEEES
T ss_pred             H-HhCCCCEEEEc
Confidence            1 23567888763

>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*

Probab=87.48  E-value=9.5  Score=30.33  Aligned_cols=82  Identities=16%  Similarity=0.315  Sum_probs=55.8

Q ss_pred             CeEEEEecCCCCH---HHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhh--h
Q 028883           59 PIVGIIMESDLDL---PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAA--A  133 (202)
Q Consensus        59 ~~V~IimGS~SD~---~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA--~  133 (202)
                      ..|++++.+.++-   .+.+.+.+.+++.|  |++.+...+..+++-.++++.+..++++-||........+...+.  .
T Consensus         2 ~~Igvi~~~~~~~f~~~~~~gi~~~~~~~g--~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~   79 (271)
T 2dri_A            2 DTIALVVSTLNNPFFVSLKDGAQKEADKLG--YNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMAN   79 (271)
T ss_dssp             CEEEEEESCSSSHHHHHHHHHHHHHHHHHT--CEEEEEECTTCHHHHHHHHHHHTTTTEEEEEECCSSTTTTHHHHHHHH
T ss_pred             cEEEEEecCCCCHHHHHHHHHHHHHHHHcC--cEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChHHHHHHHHHHH
Confidence            4789998776653   45566677788888  466677777778877788888888888877775544443323332  2


Q ss_pred             ccCCcEEEe
Q 028883          134 NSQILVIRV  142 (202)
Q Consensus       134 ~T~~PVIgV  142 (202)
                      ....||+-+
T Consensus        80 ~~~iPvV~i   88 (271)
T 2dri_A           80 QANIPVITL   88 (271)
T ss_dssp             HTTCCEEEE
T ss_pred             HCCCcEEEe
Confidence            346898876

>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...

Probab=87.45  E-value=11  Score=31.14  Aligned_cols=84  Identities=10%  Similarity=0.125  Sum_probs=55.7

Q ss_pred             CCCeEEEEecCCCCH---HHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCc-Cchhhhhh
Q 028883           57 DAPIVGIIMESDLDL---PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVE-AHLSGVAA  132 (202)
Q Consensus        57 ~~~~V~IimGS~SD~---~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~a-a~LpgvvA  132 (202)
                      +...|++++...++-   .+.+.+.+.+++.|.  ++.+...+..+++..++++.+..++++-||...... ..+-..+.
T Consensus        57 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~--~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~l~  134 (340)
T 1qpz_A           57 HTKSIGLLATSSEAAYFAEIIEAVEKNCFQKGY--TLILGNAWNNLEKQRAYLSMMAQKRVDGLLVMCSEYPEPLLAMLE  134 (340)
T ss_dssp             CCSEEEEEESCSCSHHHHHHHHHHHHHHHHTTC--EEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSCCCHHHHHHHH
T ss_pred             CCCEEEEEeCCCCChHHHHHHHHHHHHHHHcCC--EEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEeCCCCChHHHHHHH
Confidence            346899999766552   345566777778885  566677777888888888888788888777654332 22323333


Q ss_pred             hccCCcEEEe
Q 028883          133 ANSQILVIRV  142 (202)
Q Consensus       133 ~~T~~PVIgV  142 (202)
                      .....||+.+
T Consensus       135 ~~~~iPvV~~  144 (340)
T 1qpz_A          135 EYRHIPMVVM  144 (340)
T ss_dssp             TTTTSCEEEE
T ss_pred             hhCCCCEEEE
Confidence            2346788865

>1aba_A Glutaredoxin; electron transport; HET: MES; 1.45A {Enterobacteria phage T4} SCOP: c.47.1.1 PDB: 1aaz_A 1de1_A 1de2_A

Probab=87.39  E-value=2.1  Score=29.31  Aligned_cols=64  Identities=13%  Similarity=0.088  Sum_probs=42.2

Q ss_pred             CHHHHHHHHHHHHHhCCCeEEEEEccC---CCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhhcc-----CCcEEE
Q 028883           70 DLPVMNDAARTLSDFGVPYEIKILPPH---QNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANS-----QILVIR  141 (202)
Q Consensus        70 D~~v~~~a~~~L~~~gi~~ev~V~SaH---Rtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~~T-----~~PVIg  141 (202)
                      -=|.+.+|.+.|++.|++|+..=+..+   ..++...++.+..                       +..     ..|+|=
T Consensus        13 ~Cp~C~~ak~~L~~~gi~y~~idI~~~~~~~~~~~~~~l~~~~-----------------------g~~~~~~~tvP~v~   69 (87)
T 1aba_A           13 KCGPCDNAKRLLTVKKQPFEFINIMPEKGVFDDEKIAELLTKL-----------------------GRDTQIGLTMPQVF   69 (87)
T ss_dssp             CCHHHHHHHHHHHHTTCCEEEEESCSBTTBCCHHHHHHHHHHH-----------------------TCSCCTTCCSCEEE
T ss_pred             cCccHHHHHHHHHHcCCCEEEEEeeccccccCHHHHHHHHHHh-----------------------CCCCCCCCccCEEE
Confidence            458999999999999999986555432   3455545554321                       223     788886


Q ss_pred             ecCCCCCCChhh-HHHh
Q 028883          142 VPLLSEDWSEDD-VINS  157 (202)
Q Consensus       142 VP~~~~~l~G~D-LlS~  157 (202)
                      ++ .+..++|.| |..+
T Consensus        70 i~-~g~~igG~d~l~~~   85 (87)
T 1aba_A           70 AP-DGSHIGGFDQLREY   85 (87)
T ss_dssp             CT-TSCEEESHHHHHHH
T ss_pred             EE-CCEEEeCHHHHHHh
Confidence            53 445578888 7654

>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} SCOP: c.93.1.1 PDB: 1gub_A 1rpj_A*

Probab=86.83  E-value=8  Score=31.15  Aligned_cols=82  Identities=11%  Similarity=0.147  Sum_probs=54.9

Q ss_pred             CeEEEEecCCCCH---HHHHHHHHHHHHhCCCeEEEEEc--cCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhh
Q 028883           59 PIVGIIMESDLDL---PVMNDAARTLSDFGVPYEIKILP--PHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAA  133 (202)
Q Consensus        59 ~~V~IimGS~SD~---~v~~~a~~~L~~~gi~~ev~V~S--aHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~  133 (202)
                      ..|+++.-+.++-   .+.+.+.+.+++.|+  ++.+..  .+..+++..++++.+..++++-||........+...+..
T Consensus         2 ~~Igvi~~~~~~~f~~~~~~gi~~~a~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiIi~~~~~~~~~~~~~~   79 (288)
T 1gud_A            2 AEYAVVLKTLSNPFWVDMKKGIEDEAKTLGV--SVDIFASPSEGDFQSQLQLFEDLSNKNYKGIAFAPLSSVNLVMPVAR   79 (288)
T ss_dssp             CEEEEEESCSSSHHHHHHHHHHHHHHHHHTC--CEEEEECSSTTCHHHHHHHHHHHHTSSEEEEEECCSSSSTTHHHHHH
T ss_pred             cEEEEEeCCCCchHHHHHHHHHHHHHHHcCC--EEEEeCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChHHHHHHHHH
Confidence            3688888766553   344566777888995  556666  677888888888888788888777765544443333332


Q ss_pred             --ccCCcEEEe
Q 028883          134 --NSQILVIRV  142 (202)
Q Consensus       134 --~T~~PVIgV  142 (202)
                        ....|||-+
T Consensus        80 ~~~~~iPvV~~   90 (288)
T 1gud_A           80 AWKKGIYLVNL   90 (288)
T ss_dssp             HHHTTCEEEEE
T ss_pred             HHHCCCeEEEE
Confidence              246898876

>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*

Probab=86.58  E-value=12  Score=30.71  Aligned_cols=83  Identities=14%  Similarity=0.146  Sum_probs=53.0

Q ss_pred             CCCeEEEEecCCCC---HHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhh
Q 028883           57 DAPIVGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAA  133 (202)
Q Consensus        57 ~~~~V~IimGS~SD---~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~  133 (202)
                      +...|+++....++   ....+.+.+.+++.|.  ++.+...+..+++..++++.+..++++-||........  ..+.-
T Consensus        59 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~--~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~--~~~~~  134 (332)
T 2hsg_A           59 KTTTVGVIIPDISNIFYAELARGIEDIATMYKY--NIILSNSDQNQDKELHLLNNMLGKQVDGIIFMSGNVTE--EHVEE  134 (332)
T ss_dssp             -CCEEEEEEC--CCSHHHHHHHHHHHHHHHHTC--EEEEEECCSHHHHHHHHHHHTSCCSSCCEEECCSSCCH--HHHHH
T ss_pred             CCCEEEEEeCCCCCcHHHHHHHHHHHHHHHcCC--EEEEEeCCCChHHHHHHHHHHHhCCCcEEEEecCCCCH--HHHHH
Confidence            44689999876554   3456677778888886  55566666677777788888877888877765433221  22222


Q ss_pred             --ccCCcEEEec
Q 028883          134 --NSQILVIRVP  143 (202)
Q Consensus       134 --~T~~PVIgVP  143 (202)
                        ....||+.+-
T Consensus       135 l~~~~iPvV~~~  146 (332)
T 2hsg_A          135 LKKSPVPVVLAA  146 (332)
T ss_dssp             HTTSSSCEEEES
T ss_pred             HHhCCCCEEEEc
Confidence              3568888763

>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}

Probab=86.41  E-value=10  Score=30.29  Aligned_cols=82  Identities=12%  Similarity=0.255  Sum_probs=54.6

Q ss_pred             CeEEEEecCCCC---HHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhh--
Q 028883           59 PIVGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAA--  133 (202)
Q Consensus        59 ~~V~IimGS~SD---~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~--  133 (202)
                      ..|+++....++   ....+.+.+.+++.|+  ++.+......+++-.++++.+..++++-||........+...+..  
T Consensus         2 ~~Igvi~~~~~~~f~~~~~~gi~~~~~~~g~--~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~   79 (283)
T 2ioy_A            2 KTIGLVISTLNNPFFVTLKNGAEEKAKELGY--KIIVEDSQNDSSKELSNVEDLIQQKVDVLLINPVDSDAVVTAIKEAN   79 (283)
T ss_dssp             CEEEEEESCSSSHHHHHHHHHHHHHHHHHTC--EEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSSTTTTHHHHHHHH
T ss_pred             eEEEEEecCCCCHHHHHHHHHHHHHHHhcCc--EEEEecCCCCHHHHHHHHHHHHHcCCCEEEEeCCchhhhHHHHHHHH
Confidence            368888876666   2455666777888886  566667777787777788888778888777655443433233322  


Q ss_pred             ccCCcEEEe
Q 028883          134 NSQILVIRV  142 (202)
Q Consensus       134 ~T~~PVIgV  142 (202)
                      ....|||-+
T Consensus        80 ~~~iPvV~~   88 (283)
T 2ioy_A           80 SKNIPVITI   88 (283)
T ss_dssp             HTTCCEEEE
T ss_pred             HCCCeEEEe
Confidence            356898876

>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}

Probab=85.64  E-value=5.5  Score=29.20  Aligned_cols=67  Identities=16%  Similarity=0.067  Sum_probs=40.7

Q ss_pred             HHHHHHHHHHhCC-CeEEEEEccCCCchHHHHHHHH-HhhcCceEEEEecCCcCch-------hhhhhhccCCcEEEec
Q 028883           74 MNDAARTLSDFGV-PYEIKILPPHQNCKEALSYALS-AKERGIKIIIVGDGVEAHL-------SGVAAANSQILVIRVP  143 (202)
Q Consensus        74 ~~~a~~~L~~~gi-~~ev~V~SaHRtp~~l~~~~~~-~~~~g~~ViIa~AG~aa~L-------pgvvA~~T~~PVIgVP  143 (202)
                      ++++.+.+++.|+ +++..+......   ..++++. +++.+++.||.++-+-..+       +.-+.-+++.||+-||
T Consensus        81 l~~~~~~~~~~g~~~~~~~v~~~g~~---~~~I~~~~a~~~~~DlIV~G~~g~~~~~~~~Gs~~~~vl~~a~~PVlvV~  156 (156)
T 3fg9_A           81 VAEYVQLAEQRGVNQVEPLVYEGGDV---DDVILEQVIPEFKPDLLVTGADTEFPHSKIAGAIGPRLARKAPISVIVVR  156 (156)
T ss_dssp             HHHHHHHHHHHTCSSEEEEEEECSCH---HHHHHHTHHHHHCCSEEEEETTCCCTTSSSCSCHHHHHHHHCSSEEEEEC
T ss_pred             HHHHHHHHHHcCCCceEEEEEeCCCH---HHHHHHHHHHhcCCCEEEECCCCCCccceeecchHHHHHHhCCCCEEEeC
Confidence            3344455566799 488777652322   3445555 5567789888887544333       2234456788998776

>2dgd_A 223AA long hypothetical arylmalonate decarboxylas; octamer, alpha/beta structure, lyase; 2.90A {Sulfolobus tokodaii}

Probab=85.06  E-value=4.7  Score=32.49  Aligned_cols=79  Identities=5%  Similarity=-0.152  Sum_probs=46.8

Q ss_pred             CeEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEccC---------CCchHHHHHHHHHhhc--Cce-EEEEecCCcCc
Q 028883           59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPH---------QNCKEALSYALSAKER--GIK-IIIVGDGVEAH  126 (202)
Q Consensus        59 ~~V~IimGS~SD~~v~~~a~~~L~~~gi~~ev~V~SaH---------Rtp~~l~~~~~~~~~~--g~~-ViIa~AG~aa~  126 (202)
                      .+|+|++-  .-...-+.-.+.|++.|+.+.. +.+.-         -.++.+.+.++++...  |++ ||+.|+++...
T Consensus       109 ~rvgvlt~--~~~~~~~~~~~~l~~~G~~v~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~gadaIvLgCT~l~~~  185 (223)
T 2dgd_A          109 RKLWIGTP--YIKERTLEEVEWWRNKGFEIVG-YDGLGKIRGIDISNTPIFTIYRLVKRHLNEVLKADAVYIACTALSTY  185 (223)
T ss_dssp             CEEEEEES--SCHHHHHHHHHHHHTTTCEEEE-EEECCCCSHHHHHTCCHHHHHHHHHTTHHHHTTSSEEEECCTTSCCT
T ss_pred             CeEEEEeC--CchHHHHHHHHHHHhCCcEEec-ccCCCCCCcchhhccCHHHHHHHHHHHhcccCCCCEEEEeCCcccHH
Confidence            58999963  3344444556677888876422 22211         2456677777777666  775 66677777653


Q ss_pred             -hhhhhhhccCCcEE
Q 028883          127 -LSGVAAANSQILVI  140 (202)
Q Consensus       127 -LpgvvA~~T~~PVI  140 (202)
                       +-.-+...+.+|||
T Consensus       186 ~~~~~l~~~~g~PVi  200 (223)
T 2dgd_A          186 EAVQYLHEDLDMPVV  200 (223)
T ss_dssp             THHHHHHHHHTSCEE
T ss_pred             HHHHHHHHHhCCCEE
Confidence             34444445567777

>1byk_A Protein (trehalose operon repressor); LACI family, phosphate binding, protein structure, trehalose repressor, gene regulation; HET: T6P; 2.50A {Escherichia coli} SCOP: c.93.1.1

Probab=84.54  E-value=13  Score=29.10  Aligned_cols=80  Identities=11%  Similarity=0.011  Sum_probs=53.1

Q ss_pred             CeEEEEecCCCC---HHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhhcc
Q 028883           59 PIVGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANS  135 (202)
Q Consensus        59 ~~V~IimGS~SD---~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~~T  135 (202)
                      ..|+++....+|   ..+.+.+.+.+++.|.  ++.+...+..+++..++++.+..++++-||.......... .+. ..
T Consensus         3 ~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~-~l~-~~   78 (255)
T 1byk_A            3 KVVAIIVTRLDSLSENLAVQTMLPAFYEQGY--DPIMMESQFSPQLVAEHLGVLKRRNIDGVVLFGFTGITEE-MLA-HW   78 (255)
T ss_dssp             CEEEEEESCTTCHHHHHHHHHHHHHHHHHTC--EEEEEECTTCHHHHHHHHHHHHTTTCCEEEEECCTTCCTT-TSG-GG
T ss_pred             CEEEEEeCCCCCccHHHHHHHHHHHHHHcCC--EEEEEeCCCcHHHHHHHHHHHHhcCCCEEEEecCccccHH-HHH-hc
Confidence            579999977666   2455666777888885  5666677778888888888888788886666543222222 222 23


Q ss_pred             CCcEEEe
Q 028883          136 QILVIRV  142 (202)
Q Consensus       136 ~~PVIgV  142 (202)
                      ..||+.+
T Consensus        79 ~~pvV~~   85 (255)
T 1byk_A           79 QSSLVLL   85 (255)
T ss_dssp             SSSEEEE
T ss_pred             CCCEEEE
Confidence            4688765

>2fqx_A Membrane lipoprotein TMPC; ABC transport system, ligand-binding protein, guanosine, TP0319, transport protein; HET: GMP; 1.70A {Treponema pallidum} PDB: 2fqw_A* 2fqy_A*

Probab=84.48  E-value=9.4  Score=32.01  Aligned_cols=82  Identities=10%  Similarity=0.093  Sum_probs=50.6

Q ss_pred             CCeEEEEec--CCCCHH----HHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEec-CCcCchhhh
Q 028883           58 APIVGIIME--SDLDLP----VMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGD-GVEAHLSGV  130 (202)
Q Consensus        58 ~~~V~IimG--S~SD~~----v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~A-G~aa~Lpgv  130 (202)
                      +.+|++|.-  +-.|.+    +.+.+.+.++++|+  ++.++..+. .....+.++.+.+++++.||+.. +....+--+
T Consensus         4 ~~~Ig~v~~~g~~~d~~f~~~~~~Gi~~~~~~~g~--~~~~~~~~~-~~~~~~~l~~l~~~~~dgIi~~~~~~~~~~~~~   80 (318)
T 2fqx_A            4 DFVVGMVTDSGDIDDKSFNQQVWEGISRFAQENNA--KCKYVTAST-DAEYVPSLSAFADENMGLVVACGSFLVEAVIET   80 (318)
T ss_dssp             CCEEEEEESSSCTTSSSHHHHHHHHHHHHHHHTTC--EEEEEECCS-GGGHHHHHHHHHHTTCSEEEEESTTTHHHHHHH
T ss_pred             CcEEEEEEcCCCCCCccHHHHHHHHHHHHHHHhCC--eEEEEeCCC-HHHHHHHHHHHHHcCCCEEEECChhHHHHHHHH
Confidence            357999874  667743    34555667778885  555555443 34446777888888899888764 333333333


Q ss_pred             hhhccCCcEEEe
Q 028883          131 AAANSQILVIRV  142 (202)
Q Consensus       131 vA~~T~~PVIgV  142 (202)
                      .......|++-|
T Consensus        81 a~~~p~~p~v~i   92 (318)
T 2fqx_A           81 SARFPKQKFLVI   92 (318)
T ss_dssp             HHHCTTSCEEEE
T ss_pred             HHHCCCCEEEEE
Confidence            222346788876

>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}

Probab=83.86  E-value=15  Score=29.33  Aligned_cols=80  Identities=9%  Similarity=0.166  Sum_probs=56.6

Q ss_pred             CCCeEEEEecCCCC---HHHHHHHHHHHHHhCCCeE-EEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhh
Q 028883           57 DAPIVGIIMESDLD---LPVMNDAARTLSDFGVPYE-IKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAA  132 (202)
Q Consensus        57 ~~~~V~IimGS~SD---~~v~~~a~~~L~~~gi~~e-v~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA  132 (202)
                      +...|++++.+.++   ....+.+.+.+++.|+  + +.+...+..+++-.++++.+..++++-||...   ..+--  .
T Consensus         9 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~--~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~---~~~~~--~   81 (277)
T 3hs3_A            9 KSKMIGIIIPDLNNRFYAQIIDGIQEVIQKEGY--TALISFSTNSDVKKYQNAIINFENNNVDGIITSA---FTIPP--N   81 (277)
T ss_dssp             CCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTC--EEEEEECSSCCHHHHHHHHHHHHHTTCSEEEEEC---CCCCT--T
T ss_pred             CCCEEEEEeCCCCChhHHHHHHHHHHHHHHCCC--CEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEcc---hHHHH--H
Confidence            44689999988776   3455667777788875  6 67788888999988899988888898777665   22211  1


Q ss_pred             hccCCcEEEec
Q 028883          133 ANSQILVIRVP  143 (202)
Q Consensus       133 ~~T~~PVIgVP  143 (202)
                      .....|||-+=
T Consensus        82 ~~~~iPvV~~~   92 (277)
T 3hs3_A           82 FHLNTPLVMYD   92 (277)
T ss_dssp             CCCSSCEEEES
T ss_pred             HhCCCCEEEEc
Confidence            23467887653

>3s81_A Putative aspartate racemase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta fold, cytosol; 1.80A {Salmonella enterica subsp} PDB: 3s7z_A

Probab=83.84  E-value=4.1  Score=34.75  Aligned_cols=82  Identities=9%  Similarity=0.094  Sum_probs=52.9

Q ss_pred             CCeEEEEecCCCCHH---HHHHHHHHHH----HhCCCeEEEEEccCCCchHH--------------HHHHHHHhhcCceE
Q 028883           58 APIVGIIMESDLDLP---VMNDAARTLS----DFGVPYEIKILPPHQNCKEA--------------LSYALSAKERGIKI  116 (202)
Q Consensus        58 ~~~V~IimGS~SD~~---v~~~a~~~L~----~~gi~~ev~V~SaHRtp~~l--------------~~~~~~~~~~g~~V  116 (202)
                      +..+||| |+-+=+.   +++++.+...    ...+|  +.+.|--..|++.              .+.++.+++.|++.
T Consensus        26 ~k~IGii-GGmg~~aT~~~~~~i~~~~~~~~D~~h~p--~~~~s~~~i~~r~~~~~~~g~~~~~~l~~~~~~L~~~Gad~  102 (268)
T 3s81_A           26 KHTIGIL-GGMGPAATADMLEKFVELRHASCDQQHIP--LIVSSIPDIPDRTACLLSGGPSPYRYLERYLHMLEDAGAEC  102 (268)
T ss_dssp             CCCEEEE-CCSSHHHHHHHHHHHHHHSCCSSGGGSCC--EEEEECTTSCCHHHHHHHCCCCSHHHHHHHHHHHHHTTCSE
T ss_pred             CCcEEEE-ecCCHHHHHHHHHHHHHhhHhhcCCCCCC--EEEeccCCHHHHHHHHHhCCchHHHHHHHHHHHHHHcCCCE
Confidence            3579999 7777776   4444444332    23444  4666766667666              77788888889985


Q ss_pred             EE-EecCCcCchhhhhhhccCCcEEEec
Q 028883          117 II-VGDGVEAHLSGVAAANSQILVIRVP  143 (202)
Q Consensus       117 iI-a~AG~aa~LpgvvA~~T~~PVIgVP  143 (202)
                      |+ ++-..+..++- +...++.||||+.
T Consensus       103 IVIaCNTah~~l~~-lr~~~~iPvigii  129 (268)
T 3s81_A          103 IVIPCNTAHYWFDD-LQNVAKARMISIL  129 (268)
T ss_dssp             EECSCSGGGGGHHH-HHHHCSSEEECHH
T ss_pred             EEEeCCCHHHHHHH-HHHHCCCCEEccc
Confidence            44 44444555554 4456789999963

>3u7r_A NADPH-dependent FMN reductase; alpha/beta twisted open-sheet, lavoprotein, quinone reductas oxidoreductase; HET: MSE FNR 2PE; 1.40A {Paracoccus denitrificans}

Probab=83.77  E-value=8.9  Score=30.92  Aligned_cols=91  Identities=8%  Similarity=-0.014  Sum_probs=57.8

Q ss_pred             CeEEEEecCCCCHHHHHHHHHHHHH-hCCCeEEEEEccC-----------CCchHHHHHHHHHhhcCceEEEEec-CCcC
Q 028883           59 PIVGIIMESDLDLPVMNDAARTLSD-FGVPYEIKILPPH-----------QNCKEALSYALSAKERGIKIIIVGD-GVEA  125 (202)
Q Consensus        59 ~~V~IimGS~SD~~v~~~a~~~L~~-~gi~~ev~V~SaH-----------Rtp~~l~~~~~~~~~~g~~ViIa~A-G~aa  125 (202)
                      .+|+||.||.+.-..-.+.++.+.+ +.-.+|+.+....           ..|+.+.++.+..++  ++.||.+. -=.+
T Consensus         3 k~I~vi~GS~R~~S~~~~la~~~~~~~~~~~~~~~idl~dLP~~~~d~~~~~p~~~~~l~~~i~~--aD~~ii~tPeYn~   80 (190)
T 3u7r_A            3 KTVAVMVGSLRKDSLNHKLMKVLQKLAEGRLEFHLLHIGDLPHYNDDLWADAPESVLRLKDRIEH--SDAVLAITPEYNR   80 (190)
T ss_dssp             EEEEEEESCCSTTCHHHHHHHHHHHHHTTTEEEEECCGGGSCCCCGGGGGGCCHHHHHHHHHHHT--SSEEEEECCCBTT
T ss_pred             CEEEEEECCCCCCCHHHHHHHHHHHhccCCCEEEEEecccCCCCCCCcccCCCHHHHHHHHHHHh--CCcEEEechhhcc
Confidence            4799999998876665555555543 3335677776653           346677777776655  56455443 3355


Q ss_pred             chhhhh----h---------hccCCcEEEecCCCCCCCh
Q 028883          126 HLSGVA----A---------ANSQILVIRVPLLSEDWSE  151 (202)
Q Consensus       126 ~Lpgvv----A---------~~T~~PVIgVP~~~~~l~G  151 (202)
                      ..||++    -         .+..+||.-|-++.+..+|
T Consensus        81 s~pg~LKn~iDwlsr~~~~~~~~gKpv~~v~~S~G~~Gg  119 (190)
T 3u7r_A           81 SYPGMIKNAIDWATRPYGQNSWKGKPAAVIGTSPGVIGA  119 (190)
T ss_dssp             BCCHHHHHHHHHHHCSTTCCTTTTCEEEEEEEESSTTTT
T ss_pred             cCCHHHHHHHHHhcccccCCccCCCEEEEEEeCCchhhH
Confidence            555543    2         3567999888777666666

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=83.69  E-value=4.3  Score=34.24  Aligned_cols=46  Identities=7%  Similarity=-0.062  Sum_probs=24.1

Q ss_pred             CeEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHh
Q 028883           59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAK  110 (202)
Q Consensus        59 ~~V~IimGS~SD~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~  110 (202)
                      .+|++|||+.+-  +.+.+++.|-+-|..    |+-.+|..+++++..++.+
T Consensus         7 gKvalVTGas~G--IG~aiA~~la~~Ga~----Vv~~~~~~~~~~~~~~~i~   52 (254)
T 4fn4_A            7 NKVVIVTGAGSG--IGRAIAKKFALNDSI----VVAVELLEDRLNQIVQELR   52 (254)
T ss_dssp             TCEEEEETTTSH--HHHHHHHHHHHTTCE----EEEEESCHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCH--HHHHHHHHHHHcCCE----EEEEECCHHHHHHHHHHHH
Confidence            578888888773  344455555554531    2223444444444444433

>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...

Probab=83.63  E-value=15  Score=30.61  Aligned_cols=83  Identities=7%  Similarity=0.137  Sum_probs=50.1

Q ss_pred             CCCeEEEEecCCCCH---HHHHHHHHHHHHhCCCeEEEEEccCCC-chHHHHHHHHHhhcCceEEEEecCCcCchhhh--
Q 028883           57 DAPIVGIIMESDLDL---PVMNDAARTLSDFGVPYEIKILPPHQN-CKEALSYALSAKERGIKIIIVGDGVEAHLSGV--  130 (202)
Q Consensus        57 ~~~~V~IimGS~SD~---~v~~~a~~~L~~~gi~~ev~V~SaHRt-p~~l~~~~~~~~~~g~~ViIa~AG~aa~Lpgv--  130 (202)
                      +...|+++..+.++-   .+.+.+.+.+++.|+  ++.+...+.. ++...++++.+..++++-||........ .-.  
T Consensus        60 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~--~~~~~~~~~~~~~~~~~~l~~l~~~~vdGiIi~~~~~~~-~~~~~  136 (349)
T 1jye_A           60 QSLLIGVATSSLALHAPSQIVAAILSRADQLGA--SVVVSMVERSGVEACKTAVHNLLAQRVSGLIINYPLDDQ-DAIAV  136 (349)
T ss_dssp             --CEEEEEESCTTSHHHHHHHHHHHHHHHHTTC--EEEEEECCSSSHHHHHHHHHHHHTTTCSCEEEESCCCHH-HHHHH
T ss_pred             CCCEEEEEeCCCCcccHHHHHHHHHHHHHHcCC--EEEEEeCCCCcHHHHHHHHHHHHHCCCCEEEEecCCCCh-hHHHH
Confidence            346899999765552   355666777888886  5555655554 5666777777777788866665332211 111  


Q ss_pred             hhhccCCcEEEe
Q 028883          131 AAANSQILVIRV  142 (202)
Q Consensus       131 vA~~T~~PVIgV  142 (202)
                      .......||+-+
T Consensus       137 ~~~~~~iPvV~i  148 (349)
T 1jye_A          137 EAACTNVPALFL  148 (349)
T ss_dssp             HHHTTTSCEEES
T ss_pred             HHhhCCCCEEEE
Confidence            122356888865

>3h8q_A Thioredoxin reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC, developmental protein, differentiation; 2.21A {Homo sapiens} SCOP: c.47.1.0

Probab=83.47  E-value=2.6  Score=30.56  Aligned_cols=75  Identities=13%  Similarity=0.056  Sum_probs=51.3

Q ss_pred             CeEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhhccCCc
Q 028883           59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQIL  138 (202)
Q Consensus        59 ~~V~IimGS~SD~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~~T~~P  138 (202)
                      ..|.|.+.  +-=|.++++...|+++|++|+..=+.-+..+..+.+.+.+                      ..+..+.|
T Consensus        17 ~~v~vy~~--~~Cp~C~~ak~~L~~~~i~~~~~dvd~~~~~~~~~~~l~~----------------------~~g~~tvP   72 (114)
T 3h8q_A           17 SRVVIFSK--SYCPHSTRVKELFSSLGVECNVLELDQVDDGARVQEVLSE----------------------ITNQKTVP   72 (114)
T ss_dssp             CSEEEEEC--TTCHHHHHHHHHHHHTTCCCEEEETTTSTTHHHHHHHHHH----------------------HHSCCSSC
T ss_pred             CCEEEEEc--CCCCcHHHHHHHHHHcCCCcEEEEecCCCChHHHHHHHHH----------------------HhCCCccC
Confidence            35666665  4569999999999999999987766666555555454322                      12446788


Q ss_pred             EEEecCCCCCCChhh-HHHhhc
Q 028883          139 VIRVPLLSEDWSEDD-VINSIR  159 (202)
Q Consensus       139 VIgVP~~~~~l~G~D-LlS~vq  159 (202)
                      +|-+  .+..++|.| |..+-+
T Consensus        73 ~vfi--~g~~igG~d~l~~l~~   92 (114)
T 3h8q_A           73 NIFV--NKVHVGGCDQTFQAYQ   92 (114)
T ss_dssp             EEEE--TTEEEESHHHHHHHHH
T ss_pred             EEEE--CCEEEeCHHHHHHHHH
Confidence            8854  455678888 766654

>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A

Probab=83.02  E-value=3.8  Score=29.42  Aligned_cols=65  Identities=20%  Similarity=0.190  Sum_probs=40.0

Q ss_pred             HHHHHHHHH----hCC-CeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchh-----h---hhhhccCCcEEE
Q 028883           75 NDAARTLSD----FGV-PYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLS-----G---VAAANSQILVIR  141 (202)
Q Consensus        75 ~~a~~~L~~----~gi-~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~Lp-----g---vvA~~T~~PVIg  141 (202)
                      +++.+.|++    .|+ +++..+..  ..|  ...+.+.+++.+++.||.++-+.+.+.     +   -+.-+++.||+-
T Consensus        60 ~~~~~~l~~~~~~~g~~~~~~~~~~--g~~--~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~Gs~~~~vl~~~~~pVlv  135 (137)
T 2z08_A           60 ERAEGVLEEARALTGVPKEDALLLE--GVP--AEAILQAARAEKADLIVMGTRGLGALGSLFLGSQSQRVVAEAPCPVLL  135 (137)
T ss_dssp             HHHHHHHHHHHHHHCCCGGGEEEEE--SSH--HHHHHHHHHHTTCSEEEEESSCTTCCSCSSSCHHHHHHHHHCSSCEEE
T ss_pred             HHHHHHHHHHHHHcCCCccEEEEEe--cCH--HHHHHHHHHHcCCCEEEECCCCCchhhhhhhccHHHHHHhcCCCCEEE
Confidence            445555554    788 87777653  222  345556666677888888776544333     2   234467889987


Q ss_pred             ec
Q 028883          142 VP  143 (202)
Q Consensus       142 VP  143 (202)
                      ||
T Consensus       136 v~  137 (137)
T 2z08_A          136 VR  137 (137)
T ss_dssp             EC
T ss_pred             eC
Confidence            76

>3s40_A Diacylglycerol kinase; structural genomics, the center for structural genomics of infectious diseases, csgid, transfer; 2.10A {Bacillus anthracis} PDB: 3t5p_A

Probab=82.85  E-value=3.9  Score=34.78  Aligned_cols=84  Identities=13%  Similarity=0.028  Sum_probs=57.7

Q ss_pred             CeEEEEecC----CCCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhhc
Q 028883           59 PIVGIIMES----DLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAAN  134 (202)
Q Consensus        59 ~~V~IimGS----~SD~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~~  134 (202)
                      .++.||.=-    ..-....+++...|++.|+.+++...   ..+....++++++.+ ++++||+ +|+.+.|--++.++
T Consensus         9 ~~~~vi~Np~sG~~~~~~~~~~i~~~l~~~~~~~~~~~t---~~~~~a~~~~~~~~~-~~d~vv~-~GGDGTl~~v~~~l   83 (304)
T 3s40_A            9 EKVLLIVNPKAGQGDLHTNLTKIVPPLAAAFPDLHILHT---KEQGDATKYCQEFAS-KVDLIIV-FGGDGTVFECTNGL   83 (304)
T ss_dssp             SSEEEEECTTCSSSCHHHHHHHHHHHHHHHCSEEEEEEC---CSTTHHHHHHHHHTT-TCSEEEE-EECHHHHHHHHHHH
T ss_pred             CEEEEEECcccCCCchHHHHHHHHHHHHHcCCeEEEEEc---cCcchHHHHHHHhhc-CCCEEEE-EccchHHHHHHHHH
Confidence            355555422    22246678899999999998877653   345667778877754 6776554 68888888887775


Q ss_pred             ----cCCcEEEecCCCC
Q 028883          135 ----SQILVIRVPLLSE  147 (202)
Q Consensus       135 ----T~~PVIgVP~~~~  147 (202)
                          +..|+-.+|.-++
T Consensus        84 ~~~~~~~~l~iiP~Gt~  100 (304)
T 3s40_A           84 APLEIRPTLAIIPGGTC  100 (304)
T ss_dssp             TTCSSCCEEEEEECSSC
T ss_pred             hhCCCCCcEEEecCCcH
Confidence                4578888887654

>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}

Probab=82.63  E-value=19  Score=29.62  Aligned_cols=82  Identities=11%  Similarity=0.127  Sum_probs=54.3

Q ss_pred             CCCeEEEEecCCCCH---HHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhh
Q 028883           57 DAPIVGIIMESDLDL---PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAA  133 (202)
Q Consensus        57 ~~~~V~IimGS~SD~---~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~  133 (202)
                      +...|+++....++-   ...+.+.+.+++.|.  ++.+...+..+++..++++.+..++++-||.......  ...+.-
T Consensus        62 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~--~~~~~~  137 (332)
T 2o20_A           62 RTTTVGVILPTITSTYFAAITRGVDDIASMYKY--NMILANSDNDVEKEEKVLETFLSKQVDGIVYMGSSLD--EKIRTS  137 (332)
T ss_dssp             CCCEEEEEESCTTCHHHHHHHHHHHHHHHHTTC--EEEEEECTTCHHHHHHHHHHHHHTTCSEEEECSSCCC--HHHHHH
T ss_pred             CCCEEEEEeCCCCCcHHHHHHHHHHHHHHHcCC--EEEEEECCCChHHHHHHHHHHHhCCCCEEEEeCCCCC--HHHHHH
Confidence            446899999765552   345566677778885  5666677778888888888887888887777653221  122221


Q ss_pred             --ccCCcEEEe
Q 028883          134 --NSQILVIRV  142 (202)
Q Consensus       134 --~T~~PVIgV  142 (202)
                        ....||+.+
T Consensus       138 l~~~~iPvV~~  148 (332)
T 2o20_A          138 LKNSRTPVVLV  148 (332)
T ss_dssp             HHHHCCCEEEE
T ss_pred             HHhCCCCEEEE
Confidence              356888876

>2bon_A Lipid kinase; DAG kinase, transferase; 1.90A {Escherichia coli} SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A

Probab=82.32  E-value=5.4  Score=34.29  Aligned_cols=85  Identities=18%  Similarity=0.225  Sum_probs=57.2

Q ss_pred             CeEEEEecCCCCH-HHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhhcc--
Q 028883           59 PIVGIIMESDLDL-PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANS--  135 (202)
Q Consensus        59 ~~V~IimGS~SD~-~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~~T--  135 (202)
                      .++.||.=..|.- ...+++.+.|++.|+++++....   .+....++++++..+++++||+ .|+.+.+-.++.++.  
T Consensus        30 ~~~~vi~Np~sg~~~~~~~i~~~l~~~g~~~~~~~t~---~~~~~~~~~~~~~~~~~d~vvv-~GGDGTl~~v~~~l~~~  105 (332)
T 2bon_A           30 PASLLILNGKSTDNLPLREAIMLLREEGMTIHVRVTW---EKGDAARYVEEARKFGVATVIA-GGGDGTINEVSTALIQC  105 (332)
T ss_dssp             CCEEEEECSSSTTCHHHHHHHHHHHTTTCCEEEEECC---STTHHHHHHHHHHHHTCSEEEE-EESHHHHHHHHHHHHHC
T ss_pred             ceEEEEECCCCCCCchHHHHHHHHHHcCCcEEEEEec---CcchHHHHHHHHHhcCCCEEEE-EccchHHHHHHHHHhhc
Confidence            4577765333221 56788889999999988776543   2444566666665566776654 688888888887764  


Q ss_pred             ----CCcEEEecCCCC
Q 028883          136 ----QILVIRVPLLSE  147 (202)
Q Consensus       136 ----~~PVIgVP~~~~  147 (202)
                          ..|+-.+|.-+.
T Consensus       106 ~~~~~~plgiiP~Gt~  121 (332)
T 2bon_A          106 EGDDIPALGILPLGTA  121 (332)
T ss_dssp             CSSCCCEEEEEECSSS
T ss_pred             ccCCCCeEEEecCcCH
Confidence                568777887654

>3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A {Synechocystis SP} SCOP: c.47.1.0

Probab=82.23  E-value=6.9  Score=27.86  Aligned_cols=76  Identities=14%  Similarity=0.058  Sum_probs=48.8

Q ss_pred             CCCCeEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhhcc
Q 028883           56 TDAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANS  135 (202)
Q Consensus        56 ~~~~~V~IimGS~SD~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~~T  135 (202)
                      .....|.|.+.+  .=|.++++...|+++|++|+..=+..  .++...++.+..                      .+..
T Consensus        13 ~~~~~v~vy~~~--~Cp~C~~ak~~L~~~~i~y~~idI~~--~~~~~~~l~~~~----------------------~g~~   66 (99)
T 3qmx_A           13 AVSAKIEIYTWS--TCPFCMRALALLKRKGVEFQEYCIDG--DNEAREAMAARA----------------------NGKR   66 (99)
T ss_dssp             CCCCCEEEEECT--TCHHHHHHHHHHHHHTCCCEEEECTT--CHHHHHHHHHHT----------------------TTCC
T ss_pred             cCCCCEEEEEcC--CChhHHHHHHHHHHCCCCCEEEEcCC--CHHHHHHHHHHh----------------------CCCC
Confidence            344567776654  45999999999999999998654443  344333332210                      1456


Q ss_pred             CCcEEEecCCCCCCChhh-HHHhhc
Q 028883          136 QILVIRVPLLSEDWSEDD-VINSIR  159 (202)
Q Consensus       136 ~~PVIgVP~~~~~l~G~D-LlS~vq  159 (202)
                      ..|+|=  +.+..++|.| |..+.+
T Consensus        67 ~vP~if--i~g~~igG~d~l~~~~~   89 (99)
T 3qmx_A           67 SLPQIF--IDDQHIGGCDDIYALDG   89 (99)
T ss_dssp             CSCEEE--ETTEEEESHHHHHHHHH
T ss_pred             CCCEEE--ECCEEEeChHHHHHHHH
Confidence            788873  3455577888 776664

>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}

Probab=81.98  E-value=2.9  Score=31.17  Aligned_cols=74  Identities=12%  Similarity=0.017  Sum_probs=49.3

Q ss_pred             CeEEEEecCC---CCHHHHHHHHHHHHHhCCC---eEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhh
Q 028883           59 PIVGIIMESD---LDLPVMNDAARTLSDFGVP---YEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAA  132 (202)
Q Consensus        59 ~~V~IimGS~---SD~~v~~~a~~~L~~~gi~---~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA  132 (202)
                      ..|.|.|-|+   ..=|++.++.+.|+++|++   |+..=+.  ..++...++.+                       ..
T Consensus        16 ~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~gv~~~~~~~~dv~--~~~~~~~~l~~-----------------------~s   70 (121)
T 3gx8_A           16 APVVLFMKGTPEFPKCGFSRATIGLLGNQGVDPAKFAAYNVL--EDPELREGIKE-----------------------FS   70 (121)
T ss_dssp             CSEEEEESBCSSSBCTTHHHHHHHHHHHHTBCGGGEEEEECT--TCHHHHHHHHH-----------------------HH
T ss_pred             CCEEEEEeccCCCCCCccHHHHHHHHHHcCCCcceEEEEEec--CCHHHHHHHHH-----------------------Hh
Confidence            4688888776   3578999999999999999   6543222  33333333321                       23


Q ss_pred             hccCCcEEEecCCCCCCChhh-HHHhhc
Q 028883          133 ANSQILVIRVPLLSEDWSEDD-VINSIR  159 (202)
Q Consensus       133 ~~T~~PVIgVP~~~~~l~G~D-LlS~vq  159 (202)
                      +..+.|+|-  +.+...+|.| |..+.+
T Consensus        71 g~~tvP~vf--I~g~~iGG~d~l~~l~~   96 (121)
T 3gx8_A           71 EWPTIPQLY--VNKEFIGGCDVITSMAR   96 (121)
T ss_dssp             TCCSSCEEE--ETTEEEESHHHHHHHHH
T ss_pred             CCCCCCeEE--ECCEEEecHHHHHHHHH
Confidence            567789885  3555678888 777654

>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}

Probab=81.97  E-value=5.7  Score=32.43  Aligned_cols=75  Identities=13%  Similarity=0.023  Sum_probs=51.9

Q ss_pred             CCCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhh--------hhhhccCCcE
Q 028883           68 DLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSG--------VAAANSQILV  139 (202)
Q Consensus        68 ~SD~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~Lpg--------vvA~~T~~PV  139 (202)
                      ......++++.+.++..|++++..+......   ...+.+.+++++++.||.+.-+.+.+..        -+.-.++.||
T Consensus        47 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~---~~~i~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~vl~~~~~PV  123 (290)
T 3mt0_A           47 RDHSAALNDLAQELREEGYSVSTNQAWKDSL---HQTIIAEQQAEGCGLIIKQHFPDNPLKKAILTPDDWKLLRFAPCPV  123 (290)
T ss_dssp             SCCHHHHHHHHHHHHHTTCCEEEEEECSSSH---HHHHHHHHHHHTCSEEEEECCCSCTTSTTSCCHHHHHHHHHCSSCE
T ss_pred             HHHHHHHHHHHHHHhhCCCeEEEEEEeCCCH---HHHHHHHHHhcCCCEEEEecccCCchhhcccCHHHHHHHhcCCCCE
Confidence            5566788888889999999999888633333   3344455556778888888766554433        2345689999


Q ss_pred             EEecCC
Q 028883          140 IRVPLL  145 (202)
Q Consensus       140 IgVP~~  145 (202)
                      +-||..
T Consensus       124 lvv~~~  129 (290)
T 3mt0_A          124 LMTKTA  129 (290)
T ss_dssp             EEECCC
T ss_pred             EEecCC
Confidence            999954

>2xed_A Putative maleate isomerase; nicotinic acid catabolism, cofactor-independent CIS-trans isomerase; 1.95A {Nocardia farcinica} PDB: 2xec_A

Probab=81.62  E-value=10  Score=32.02  Aligned_cols=80  Identities=14%  Similarity=0.064  Sum_probs=50.5

Q ss_pred             CeEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEc-c-------CCCchHHHHHHHHHhhcCce-EEEE-ecCCcCc-h
Q 028883           59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILP-P-------HQNCKEALSYALSAKERGIK-IIIV-GDGVEAH-L  127 (202)
Q Consensus        59 ~~V~IimGS~SD~~v~~~a~~~L~~~gi~~ev~V~S-a-------HRtp~~l~~~~~~~~~~g~~-ViIa-~AG~aa~-L  127 (202)
                      .+|+|++  +.-...-+.-.+.|+..|+++..-... .       .-.++.+.+.++++..+|++ ||+. |.++... +
T Consensus       147 ~rvgvlt--p~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~~~~g~~~~~~l~~~~~~l~~~gadaIvLg~CT~l~~~~~  224 (273)
T 2xed_A          147 QRVALVT--PYMRPLAEKVVAYLEAEGFTISDWRALEVADNTEVGCIPGEQVMAAARSLDLSEVDALVISCAVQMPSLPL  224 (273)
T ss_dssp             CEEEEEE--CSCHHHHHHHHHHHHHTTCEEEEEEECCCCBHHHHHTCCHHHHHHHHHHSCCTTCSEEEEESSSSSCCTTH
T ss_pred             CeEEEEc--CChhhhHHHHHHHHHHCCCEEeccccCCCccchhhcccCHHHHHHHHHHHhhCCCCEEEEcCCCCcchHHh
Confidence            5899996  333444556667788899874321111 1       22467788888888777886 5566 7777653 3


Q ss_pred             hhhhhhccCCcEE
Q 028883          128 SGVAAANSQILVI  140 (202)
Q Consensus       128 pgvvA~~T~~PVI  140 (202)
                      -.-+...+.+|||
T Consensus       225 ~~~le~~lg~PVi  237 (273)
T 2xed_A          225 VETAEREFGIPVL  237 (273)
T ss_dssp             HHHHHHHHSSCEE
T ss_pred             HHHHHHHhCCCEE
Confidence            4444445678887

>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}

Probab=81.38  E-value=4  Score=33.50  Aligned_cols=67  Identities=13%  Similarity=0.054  Sum_probs=40.3

Q ss_pred             HHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhh--------hhhccCCcEEEecCCC
Q 028883           77 AARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGV--------AAANSQILVIRVPLLS  146 (202)
Q Consensus        77 a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~Lpgv--------vA~~T~~PVIgVP~~~  146 (202)
                      +.+.++..|++++..+......   ...+.+.+++.+++.||.+.-+...+...        +.-.++.||+-||...
T Consensus        78 ~~~~~~~~~v~~~~~~~~~g~~---~~~i~~~a~~~~~DLiV~G~~g~~~~~~~~~Gs~~~~vl~~~~~PVlvv~~~~  152 (319)
T 3olq_A           78 QARYYLEAGIQIDIKVIWHNRP---YEAIIEEVITDKHDLLIKMAHQHDKLGSLIFTPLDWQLLRKCPAPVWMVKDKE  152 (319)
T ss_dssp             HHHHHHHTTCCEEEEEEECSCH---HHHHHHHHHHHTCSEEEEEEBCC--CCSCBCCHHHHHHHHHCSSCEEEEESSC
T ss_pred             HHHHHhhcCCeEEEEEEecCCh---HHHHHHHHHhcCCCEEEEecCcCchhhcccccccHHHHHhcCCCCEEEecCcc
Confidence            3333445699988887633333   33444445556788777776554443332        4567899999999653

>2hqb_A Transcriptional activator of COMK gene; berkeley structure genomics center target 1957B, structural genomics, PSI; 2.70A {Bacillus halodurans}

Probab=81.35  E-value=5.8  Score=32.87  Aligned_cols=83  Identities=12%  Similarity=0.162  Sum_probs=49.3

Q ss_pred             CCeEEEEec-CCCCH----HHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecC-CcCchhhhh
Q 028883           58 APIVGIIME-SDLDL----PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDG-VEAHLSGVA  131 (202)
Q Consensus        58 ~~~V~IimG-S~SD~----~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG-~aa~Lpgvv  131 (202)
                      ..+|++|.- +-+|.    .+.+.+.+.++++|+  ++.++..+..+++..++++.+.+++++.||.... ....+--+.
T Consensus         5 ~~~Ig~v~~~~~~d~~f~~~~~~gi~~~~~~~g~--~~~~~~~~~~~~~~~~~l~~l~~~~vdgIi~~~~~~~~~~~~~~   82 (296)
T 2hqb_A            5 GGMVGLLVEDTIDDQGWNRKAYEGLLNIHSNLDV--DVVLEEGVNSEQKAHRRIKELVDGGVNLIFGHGHAFAEYFSTIH   82 (296)
T ss_dssp             -CEEEEECCCC----CCTHHHHHHHHHHHHHSCC--EEEEECCCCSHHHHHHHHHHHHHTTCCEEEECSTHHHHHHHTTT
T ss_pred             CcEEEEEECCCCCCCcHHHHHHHHHHHHHHHhCC--eEEEEeCCCCHHHHHHHHHHHHHCCCCEEEEcCHhHHHHHHHHH
Confidence            457999885 34553    456666777888985  5666665566666777888888889998887642 222222211


Q ss_pred             hhccCCcEEEe
Q 028883          132 AANSQILVIRV  142 (202)
Q Consensus       132 A~~T~~PVIgV  142 (202)
                      ......|++-|
T Consensus        83 ~~~p~~p~v~i   93 (296)
T 2hqb_A           83 NQYPDVHFVSF   93 (296)
T ss_dssp             TSCTTSEEEEE
T ss_pred             HHCCCCEEEEE
Confidence            11225667765

>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}

Probab=81.19  E-value=8.4  Score=30.48  Aligned_cols=81  Identities=10%  Similarity=0.144  Sum_probs=54.2

Q ss_pred             CCCeEEEEecCCCCH---HHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhh-
Q 028883           57 DAPIVGIIMESDLDL---PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAA-  132 (202)
Q Consensus        57 ~~~~V~IimGS~SD~---~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA-  132 (202)
                      +...|++++.+.+|-   ...+.+.+.+++.|+  ++.+...+..++...++++.+..++++-||.....    +..+. 
T Consensus         7 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~l~~~~~dgiIi~~~~----~~~~~~   80 (277)
T 3e61_A            7 KSKLIGLLLPDMSNPFFTLIARGVEDVALAHGY--QVLIGNSDNDIKKAQGYLATFVSHNCTGMISTAFN----ENIIEN   80 (277)
T ss_dssp             ---CEEEEESCTTSHHHHHHHHHHHHHHHHTTC--CEEEEECTTCHHHHHHHHHHHHHTTCSEEEECGGG----HHHHHH
T ss_pred             CCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCC--EEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEecCC----hHHHHH
Confidence            346799999876663   345566677788886  45567888889988899998888889887776522    22222 


Q ss_pred             --hccCCcEEEec
Q 028883          133 --ANSQILVIRVP  143 (202)
Q Consensus       133 --~~T~~PVIgVP  143 (202)
                        .....|||.+=
T Consensus        81 ~l~~~~iPvV~~~   93 (277)
T 3e61_A           81 TLTDHHIPFVFID   93 (277)
T ss_dssp             HHHHC-CCEEEGG
T ss_pred             HHHcCCCCEEEEe
Confidence              23478888653

>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0

Probab=80.62  E-value=6.9  Score=28.01  Aligned_cols=65  Identities=14%  Similarity=0.169  Sum_probs=40.3

Q ss_pred             HHHHHHHHHHHhCCCe---EEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhh--------hhhhccCCcEEE
Q 028883           73 VMNDAARTLSDFGVPY---EIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSG--------VAAANSQILVIR  141 (202)
Q Consensus        73 v~~~a~~~L~~~gi~~---ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~Lpg--------vvA~~T~~PVIg  141 (202)
                      ..+++.+.++..|+++   +..+..-  .|  ...+.+.+++.+++.||.++-+...+..        -+.-+++.||+-
T Consensus        71 ~l~~~~~~~~~~g~~~~~~~~~~~~g--~~--~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~Gs~~~~vl~~~~~pVlv  146 (147)
T 3hgm_A           71 IAVQAKTRATELGVPADKVRAFVKGG--RP--SRTIVRFARKRECDLVVIGAQGTNGDKSLLLGSVAQRVAGSAHCPVLV  146 (147)
T ss_dssp             HHHHHHHHHHHTTCCGGGEEEEEEES--CH--HHHHHHHHHHTTCSEEEECSSCTTCCSCCCCCHHHHHHHHHCSSCEEE
T ss_pred             HHHHHHHHHHhcCCCccceEEEEecC--CH--HHHHHHHHHHhCCCEEEEeCCCCccccceeeccHHHHHHhhCCCCEEE
Confidence            4455666677789988   7666543  22  3455666666788988888765444332        223456777764

>2o6l_A UDP-glucuronosyltransferase 2B7; drug metabolism, rossman, MAD, enzyme, nucleotide binding, sugar,UDP-glucuronosyltransferase, UGT; 1.80A {Homo sapiens}

Probab=80.05  E-value=16  Score=27.10  Aligned_cols=129  Identities=12%  Similarity=0.042  Sum_probs=67.8

Q ss_pred             CCeEEEEecCCC---CHHHHHHHHHHHHHhCCCeEEEEEccCC----CchH------H--HHHHHHHhhcCceEEEEecC
Q 028883           58 APIVGIIMESDL---DLPVMNDAARTLSDFGVPYEIKILPPHQ----NCKE------A--LSYALSAKERGIKIIIVGDG  122 (202)
Q Consensus        58 ~~~V~IimGS~S---D~~v~~~a~~~L~~~gi~~ev~V~SaHR----tp~~------l--~~~~~~~~~~g~~ViIa~AG  122 (202)
                      .+.|.|..||..   .....+++.+.|++++  +.+-+..-..    .++.      +  .++..   ...++++|.-+|
T Consensus        21 ~~~vlv~~Gs~~~~~~~~~~~~~~~al~~~~--~~~~~~~g~~~~~~~~~~v~~~~~~~~~~~l~---~~~ad~~I~~~G   95 (170)
T 2o6l_A           21 NGVVVFSLGSMVSNMTEERANVIASALAQIP--QKVLWRFDGNKPDTLGLNTRLYKWIPQNDLLG---HPKTRAFITHGG   95 (170)
T ss_dssp             TCEEEEECCSCCTTCCHHHHHHHHHHHTTSS--SEEEEECCSSCCTTCCTTEEEESSCCHHHHHT---STTEEEEEECCC
T ss_pred             CCEEEEECCCCcccCCHHHHHHHHHHHHhCC--CeEEEEECCcCcccCCCcEEEecCCCHHHHhc---CCCcCEEEEcCC
Confidence            356777777764   5667777777777665  3443333221    1111      0  12221   144799998665


Q ss_pred             CcCchhhhhhhccCCcEEEecCCCCCCChhhHHHhhcCCCCCeeeEEecC-ChhhHHHHHHHHHcc-CCHHHHHHHHHHH
Q 028883          123 VEAHLSGVAAANSQILVIRVPLLSEDWSEDDVINSIRMPSHVQVASVPRN-NAKNAALYAVKVLGI-ADEDLLERIRKYV  200 (202)
Q Consensus       123 ~aa~LpgvvA~~T~~PVIgVP~~~~~l~G~DLlS~vqMP~GvpVatV~I~-n~~NAAl~Aa~IL~~-~d~~l~~kl~~~~  200 (202)
                      ...-   +=|-..-+|+|.+|.... ..+.. .-+.+  .|..  .+ +. +..+..-++..|..+ .|++++++.++++
T Consensus        96 ~~t~---~Ea~~~G~P~i~~p~~~~-Q~~na-~~l~~--~g~g--~~-~~~~~~~~~~l~~~i~~ll~~~~~~~~a~~~~  165 (170)
T 2o6l_A           96 ANGI---YEAIYHGIPMVGIPLFAD-QPDNI-AHMKA--RGAA--VR-VDFNTMSSTDLLNALKRVINDPSYKENVMKLS  165 (170)
T ss_dssp             HHHH---HHHHHHTCCEEECCCSTT-HHHHH-HHHHT--TTSE--EE-CCTTTCCHHHHHHHHHHHHHCHHHHHHHHHHC
T ss_pred             ccHH---HHHHHcCCCEEeccchhh-HHHHH-HHHHH--cCCe--EE-eccccCCHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence            4222   223346799999998532 11111 11222  3543  23 33 222444555555444 5888999888775


Q ss_pred             h
Q 028883          201 E  201 (202)
Q Consensus       201 ~  201 (202)
                      +
T Consensus       166 ~  166 (170)
T 2o6l_A          166 R  166 (170)
T ss_dssp             -
T ss_pred             H
Confidence            4

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	202
d1o4va_	169	c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoi	2e-34
d1qcza_	163	c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoi	3e-34
d1xmpa_	155	c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoi	3e-32
d1u11a_	159	c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoi	1e-30

>d1o4va_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) {Thermotoga maritima [TaxId: 2336]} Length = 169

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
family: N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
domain: N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
species: Thermotoga maritima [TaxId: 2336]

 Score =  118 bits (297), Expect = 2e-34
 Identities = 62/145 (42%), Positives = 90/145 (62%), Gaps = 1/145 (0%)

Query: 59  PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIII 118
           P VGIIM SD DLPVM  AA  L +FG+ YEI I+  H+       YA +A+ERGI++II
Sbjct: 1   PRVGIIMGSDSDLPVMKQAAEILEEFGIDYEITIVSAHRTPDRMFEYAKNAEERGIEVII 60

Query: 119 VGDGVEAHLSGVAAANSQILVIRVPLLSEDWS-EDDVINSIRMPSHVQVASVPRNNAKNA 177
            G G  AHL G+ A+ + + VI VP+ +   +  D + + ++MP  V VA+V  NNAKNA
Sbjct: 61  AGAGGAAHLPGMVASITHLPVIGVPVKTSTLNGLDSLFSIVQMPGGVPVATVAINNAKNA 120

Query: 178 ALYAVKVLGIADEDLLERIRKYVEE 202
            + A  +LGI   ++  ++++Y E 
Sbjct: 121 GILAASILGIKYPEIARKVKEYKER 145

>d1qcza_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) {Escherichia coli [TaxId: 562]} Length = 163

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
family: N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
domain: N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
species: Escherichia coli [TaxId: 562]

 Score =  117 bits (294), Expect = 3e-34
 Identities = 45/147 (30%), Positives = 74/147 (50%), Gaps = 3/147 (2%)

Query: 59  PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIII 118
             V I+M S  D   M  AA       VP+ ++++  H+   +  S+A SA+E G ++II
Sbjct: 2   ARVAIVMGSKSDWATMQFAAEIFEILNVPHHVEVVSAHRTPDKLFSFAESAEENGYQVII 61

Query: 119 VGDGVEAHLSGVAAANSQILVIRVPLLSEDWSEDD---VINSIRMPSHVQVASVPRNNAK 175
            G G  AHL G+ AA + + V+ VP+ S   S  D    I  +     V   ++ +  A 
Sbjct: 62  AGAGGAAHLPGMIAAKTLVPVLGVPVQSAALSGVDSLYSIVQMPRGIPVGTLAIGKAGAA 121

Query: 176 NAALYAVKVLGIADEDLLERIRKYVEE 202
           NAAL A ++L   D++L +R+  + + 
Sbjct: 122 NAALLAAQILATHDKELHQRLNDWRKA 148

>d1xmpa_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) {Bacillus anthracis [TaxId: 1392]} Length = 155

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
family: N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
domain: N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
species: Bacillus anthracis [TaxId: 1392]

 Score =  111 bits (280), Expect = 3e-32
 Identities = 48/147 (32%), Positives = 76/147 (51%), Gaps = 3/147 (2%)

Query: 59  PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIII 118
            +VG+IM S  D   M  A   L +  +PYE K++  H+       YA +A+ERG+K+II
Sbjct: 2   SLVGVIMGSTSDWETMKYACDILDELNIPYEKKVVSAHRTPDYMFEYAETARERGLKVII 61

Query: 119 VGDGVEAHLSGVAAANSQILVIRVPLLSEDWSEDDVINSIRM---PSHVQVASVPRNNAK 175
            G G  AHL G+ AA + + VI VP+ S+  +  D + SI        V   ++ +  + 
Sbjct: 62  AGAGGAAHLPGMVAAKTNLPVIGVPVQSKALNGLDSLLSIVQMPGGVPVATVAIGKAGST 121

Query: 176 NAALYAVKVLGIADEDLLERIRKYVEE 202
           NA L A ++LG   +D+ + +    E 
Sbjct: 122 NAGLLAAQILGSFHDDIHDALELRREA 148

>d1u11a_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) {Acetobacter aceti [TaxId: 435]} Length = 159

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
family: N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
domain: N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
species: Acetobacter aceti [TaxId: 435]

 Score =  108 bits (270), Expect = 1e-30
 Identities = 49/148 (33%), Positives = 78/148 (52%), Gaps = 3/148 (2%)

Query: 58  APIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKII 117
           AP+VGIIM S  D   M  A   L++  +P+E  I+  H+       YA +A ERG+ +I
Sbjct: 2   APVVGIIMGSQSDWETMRHADALLTELEIPHETLIVSAHRTPDRLADYARTAAERGLNVI 61

Query: 118 IVGDGVEAHLSGVAAANSQILVIRVPL-LSEDWSEDDVINSIRMP--SHVQVASVPRNNA 174
           I G G  AHL G+ AA +++ V+ VP+        D +++ ++MP    V   ++  + A
Sbjct: 62  IAGAGGAAHLPGMCAAWTRLPVLGVPVESRALKGMDSLLSIVQMPGGVPVGTLAIGASGA 121

Query: 175 KNAALYAVKVLGIADEDLLERIRKYVEE 202
           KNAAL A  +L + +  L  R+  +   
Sbjct: 122 KNAALLAASILALYNPALAARLETWRAL 149

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	202
d1xmpa_	155	N5-CAIR mutase (phosphoribosylaminoimidazole carbo	100.0
d1o4va_	169	N5-CAIR mutase (phosphoribosylaminoimidazole carbo	100.0
d1u11a_	159	N5-CAIR mutase (phosphoribosylaminoimidazole carbo	100.0
d1qcza_	163	N5-CAIR mutase (phosphoribosylaminoimidazole carbo	100.0
d1jq5a_	366	Glycerol dehydrogenase {Bacillus stearothermophilu	97.44
d1o2da_	359	Alcohol dehydrogenase TM0920 {Thermotoga maritima	96.7
d1vlja_	398	NADH-dependent butanol dehydrogenase A (TM0820) {T	96.38
d2dria_	271	D-ribose-binding protein {Escherichia coli, strain	95.99
d1rrma_	385	Lactaldehyde reductase FucO {Escherichia coli [Tax	95.89
d2bona1	295	Lipid kinase YegS {Escherichia coli [TaxId: 562]}	95.83
d2pjua1	186	Propionate catabolism operon regulatory protein Pr	94.99
d2nzug1	275	Glucose-resistance amylase regulator CcpA, C-termi	93.85
d1kq3a_	364	Glycerol dehydrogenase {Thermotoga maritima [TaxId	93.71
d1oj7a_	390	Hypothetical oxidoreductase yqhD {Escherichia coli	93.65
d1tjya_	316	AI-2 receptor LsrB {Salmonella typhi [TaxId: 90370	93.3
d1dbqa_	282	Purine repressor (PurR), C-terminal domain {Escher	92.8
d1byka_	255	Trehalose repressor, C-terminal domain {Escherichi	92.4
d1guda_	288	D-allose-binding protein {Escherichia coli [TaxId:	92.37
d1mjha_	160	"Hypothetical" protein MJ0577 {Archaeon Methanococ	89.91
d1zl0a2	167	LD-carboxypeptidase A, N-terminal domain {Pseudomo	88.94
d1sg6a_	389	Dehydroquinate synthase, DHQS {Aspergillus nidulan	88.72
d3etja1	79	N5-carboxyaminoimidazole ribonucleotide synthetase	88.43
d2qv7a1	312	Diacylglycerol kinase DgkB {Staphylococcus aureus	88.1
d2fvya1	305	Galactose/glucose-binding protein {Escherichia col	88.01
d1ujna_	347	Dehydroquinate synthase, DHQS {Thermus thermophilu	87.8
d2gm3a1	171	Putative ethylene-responsive protein AT3g01520/F4P	87.56
d1jx6a_	338	Quorum-sensing signal (autoinducer-2) binding prot	86.55
d1utaa_	77	Cell division protein FtsN {Escherichia coli [TaxI	86.38
d8abpa_	305	L-arabinose-binding protein {Escherichia coli [Tax	85.63
d1wika_	109	Thioredoxin-like protein 2 {Mouse (Mus musculus) [	85.0
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	84.96
d2bd0a1	240	Bacterial sepiapterin reductase {Chlorobium tepidu	84.45
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	82.75
d1uz5a3	148	MoeA, central domain {Archaeon Pyrococcus horikosh	82.65
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	82.49
d1oaaa_	259	Sepiapterin reductase {Mouse (Mus musculus) [TaxId	81.2
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	80.85
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	80.64
d1ktea_	105	Glutaredoxin (Grx, thioltransferase) {Pig (Sus scr	80.4
d1abaa_	87	Glutaredoxin (Grx, thioltransferase) {Bacteriophag	80.32
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	80.03

>d1xmpa_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) {Bacillus anthracis [TaxId: 1392]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
family: N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
domain: N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
species: Bacillus anthracis [TaxId: 1392]

Probab=100.00  E-value=7e-59  Score=379.34  Aligned_cols=145  Identities=35%  Similarity=0.573  Sum_probs=141.8

Q ss_pred             CCeEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhhccCC
Q 028883           58 APIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQI  137 (202)
Q Consensus        58 ~~~V~IimGS~SD~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~~T~~  137 (202)
                      +|+|+|||||+||+|+|+||.++|++|||+||++|+||||+|+++.+|++++++++++|||++|||+||||||+|++|++
T Consensus         1 K~~V~IimGS~SD~~~~~~a~~~L~~~gi~~~~~v~SAHrtp~rl~~~~~~~~~~~~~viIa~AG~aa~Lpgvva~~t~~   80 (155)
T d1xmpa_           1 KSLVGVIMGSTSDWETMKYACDILDELNIPYEKKVVSAHRTPDYMFEYAETARERGLKVIIAGAGGAAHLPGMVAAKTNL   80 (155)
T ss_dssp             CCSEEEEESSGGGHHHHHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHTTTTTCCEEEEEEESSCCHHHHHHTTCCS
T ss_pred             CCEEEEEECcHhhHHHHHHHHHHHHHcCCcEEEEEechhcChHHHHHHHHHHHhhcceEEEeecccCCCchhHHHHhccc
Confidence            37899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cEEEecCCCCCCChhh-HHHhhcCCCCCeeeEEecC--ChhhHHHHHHHHHccCCHHHHHHHHHHHhC
Q 028883          138 LVIRVPLLSEDWSEDD-VINSIRMPSHVQVASVPRN--NAKNAALYAVKVLGIADEDLLERIRKYVEE  202 (202)
Q Consensus       138 PVIgVP~~~~~l~G~D-LlS~vqMP~GvpVatV~I~--n~~NAAl~Aa~IL~~~d~~l~~kl~~~~~~  202 (202)
                      ||||||+++++++|+| |||++|||+|+||+||+||  |++|||++|+|||++.|++|++||++||++
T Consensus        81 PVIgVP~~~~~~~G~d~llS~vqMP~Gipv~tv~v~~~~~~nAa~~A~~Il~~~d~~l~~~l~~~r~~  148 (155)
T d1xmpa_          81 PVIGVPVQSKALNGLDSLLSIVQMPGGVPVATVAIGKAGSTNAGLLAAQILGSFHDDIHDALELRREA  148 (155)
T ss_dssp             CEEEEEECCTTTTTHHHHHHHHCCCTTCCCEECCSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             eEEEEEeecccCcCcccHHHHHhCccCCCceEEEecCcchHHHHHHHHHHHccCCHHHHHHHHHHHHH
Confidence            9999999999999999 9999999999999999999  889999999999999999999999999974

>d1o4va_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
family: N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
domain: N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=7.4e-59  Score=383.67  Aligned_cols=144  Identities=43%  Similarity=0.705  Sum_probs=141.9

Q ss_pred             CeEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhhccCCc
Q 028883           59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQIL  138 (202)
Q Consensus        59 ~~V~IimGS~SD~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~~T~~P  138 (202)
                      |+|+|||||+||+++|+||.++|++|||+||++|+|+||+|+++.+|++++++++++|||++|||++|||||+||+|++|
T Consensus         1 PkV~Ii~Gs~SD~~~~~~a~~~L~~~gi~~~~~v~saHr~p~rl~~~~~~~~~~~~~viIa~AG~aa~LpgvvA~~t~~P   80 (169)
T d1o4va_           1 PRVGIIMGSDSDLPVMKQAAEILEEFGIDYEITIVSAHRTPDRMFEYAKNAEERGIEVIIAGAGGAAHLPGMVASITHLP   80 (169)
T ss_dssp             CEEEEEESCGGGHHHHHHHHHHHHHTTCEEEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEEESSCCHHHHHHHHCSSC
T ss_pred             CeEEEEECcHhhHHHHHHHHHHHHHcCCcEEEEEeeeecCHHHHHHHHHHHHhcCCeEEEEeecCCcCchHHHHHhccee
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEecCCCCCCChhh-HHHhhcCCCCCeeeEEecCChhhHHHHHHHHHccCCHHHHHHHHHHHhC
Q 028883          139 VIRVPLLSEDWSEDD-VINSIRMPSHVQVASVPRNNAKNAALYAVKVLGIADEDLLERIRKYVEE  202 (202)
Q Consensus       139 VIgVP~~~~~l~G~D-LlS~vqMP~GvpVatV~I~n~~NAAl~Aa~IL~~~d~~l~~kl~~~~~~  202 (202)
                      |||||++++.++|+| ||||+|||+|+||+||+|||++|||++|+|||+++|++||+||++||++
T Consensus        81 VIgvP~~~~~~~G~daLlS~lqmp~gvpVatV~Id~~~nAA~~A~~Il~l~d~~i~~kl~~~r~~  145 (169)
T d1o4va_          81 VIGVPVKTSTLNGLDSLFSIVQMPGGVPVATVAINNAKNAGILAASILGIKYPEIARKVKEYKER  145 (169)
T ss_dssp             EEEEEECCTTTTTHHHHHHHHTCCTTCCCEECCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             EEecccccccCccHHHHHHhccCCccCCceeeecCchHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence            999999999999999 9999999999999999999999999999999999999999999999973

>d1u11a_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) {Acetobacter aceti [TaxId: 435]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
family: N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
domain: N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
species: Acetobacter aceti [TaxId: 435]

Probab=100.00  E-value=7.8e-59  Score=380.35  Aligned_cols=145  Identities=35%  Similarity=0.547  Sum_probs=140.8

Q ss_pred             CCeEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhhccCC
Q 028883           58 APIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQI  137 (202)
Q Consensus        58 ~~~V~IimGS~SD~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~~T~~  137 (202)
                      .|+|+|||||+||+++|+|+.++|++|||+||++|+||||+|+++.+|++++++++++|||++|||+||||||+|++|++
T Consensus         2 ~P~V~IimGS~SD~~v~~~a~~~L~~~gI~~e~~v~SAHR~p~~l~~~~~~~e~~~~~viIa~AG~aaaLpgvva~~t~~   81 (159)
T d1u11a_           2 APVVGIIMGSQSDWETMRHADALLTELEIPHETLIVSAHRTPDRLADYARTAAERGLNVIIAGAGGAAHLPGMCAAWTRL   81 (159)
T ss_dssp             CCSEEEEESSGGGHHHHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEEESSCCHHHHHHHHCSS
T ss_pred             cCeEEEEeCCHhhHHHHHHHHHHHHHhCCceEEEEehHhhChHHHHHHHHHHHhcCCeEEEEEecCCCCCccceeeecce
Confidence            47999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cEEEecCCCCCCChhh-HHHhhcCCCCCeeeEEec--CChhhHHHHHHHHHccCCHHHHHHHHHHHhC
Q 028883          138 LVIRVPLLSEDWSEDD-VINSIRMPSHVQVASVPR--NNAKNAALYAVKVLGIADEDLLERIRKYVEE  202 (202)
Q Consensus       138 PVIgVP~~~~~l~G~D-LlS~vqMP~GvpVatV~I--~n~~NAAl~Aa~IL~~~d~~l~~kl~~~~~~  202 (202)
                      ||||||++++.++|+| |||++|||+|+||+|+.|  +|++|||++|+|||+++|++||+||++||++
T Consensus        82 PVIgvP~~~~~~~g~d~l~S~~qMP~g~pv~tv~vg~~~~~nAa~~A~~IL~~~d~~l~~kl~~~r~~  149 (159)
T d1u11a_          82 PVLGVPVESRALKGMDSLLSIVQMPGGVPVGTLAIGASGAKNAALLAASILALYNPALAARLETWRAL  149 (159)
T ss_dssp             CEEEEEECCTTTTTHHHHHHHHCCCTTSCCEECCSSHHHHHHHHHHHHHHHGGGCHHHHHHHHHHHHH
T ss_pred             eEEEeccccccccccccHHHHhhCcCCCCceEEEecCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            9999999999999999 999999999999999665  5999999999999999999999999999973

>d1qcza_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
family: N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
domain: N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2e-58  Score=379.18  Aligned_cols=143  Identities=32%  Similarity=0.501  Sum_probs=140.7

Q ss_pred             CeEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhhccCCc
Q 028883           59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQIL  138 (202)
Q Consensus        59 ~~V~IimGS~SD~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~~T~~P  138 (202)
                      ++|+|||||+||+++|+|+.++|++|||+||++|+||||+|+++.+|++++++++++|||++|||+||||||+|++|++|
T Consensus         2 aKV~IImGS~SD~~~~~~a~~~L~~~gI~~e~~v~SAHRtp~~l~~~~~~~~~~~~~ViIa~AG~aa~LpgvvA~~t~~P   81 (163)
T d1qcza_           2 ARVAIVMGSKSDWATMQFAAEIFEILNVPHHVEVVSAHRTPDKLFSFAESAEENGYQVIIAGAGGAAHLPGMIAAKTLVP   81 (163)
T ss_dssp             CCEEEEESSGGGHHHHHHHHHHHHHHTCCEEEEECCTTTCHHHHHHHHHHTTTTTCSEEEEEECSSCCHHHHHHHSCSSC
T ss_pred             CeEEEEECcHhhHHHHHHHHHHHHHcCCCeEEEEeccccCHHHHHHHHHHHHHcCCeEEEEeccCCCcccchhhHhccce
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEecCCCCCCChhh-HHHhhcCCCCCeeeEEecC--ChhhHHHHHHHHHccCCHHHHHHHHHHHh
Q 028883          139 VIRVPLLSEDWSEDD-VINSIRMPSHVQVASVPRN--NAKNAALYAVKVLGIADEDLLERIRKYVE  201 (202)
Q Consensus       139 VIgVP~~~~~l~G~D-LlS~vqMP~GvpVatV~I~--n~~NAAl~Aa~IL~~~d~~l~~kl~~~~~  201 (202)
                      |||||++++.++|+| |||++|||+|+||+||+|+  |++|||++|+|||+++|++||+||++||+
T Consensus        82 VIgVP~~~~~~~g~d~lls~~qMp~g~pv~tv~v~~~~~~nAal~A~~IL~~~d~~l~~kl~~~r~  147 (163)
T d1qcza_          82 VLGVPVQSAALSGVDSLYSIVQMPRGIPVGTLAIGKAGAANAALLAAQILATHDKELHQRLNDWRK  147 (163)
T ss_dssp             EEEEECCCTTTTTHHHHHHHHTCCTTCCCEECCSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             eeeccccccccCCcchhhHHhhccCCCCceEEEEecCchHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            999999999999999 9999999999999998887  99999999999999999999999999997

>d1jq5a_ e.22.1.2 (A:) Glycerol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Multi-domain proteins (alpha and beta)
fold: Dehydroquinate synthase-like
superfamily: Dehydroquinate synthase-like
family: Iron-containing alcohol dehydrogenase
domain: Glycerol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.44  E-value=8.5e-05  Score=63.26  Aligned_cols=89  Identities=13%  Similarity=0.060  Sum_probs=75.5

Q ss_pred             CeEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCc-CchhhhhhhccCC
Q 028883           59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVE-AHLSGVAAANSQI  137 (202)
Q Consensus        59 ~~V~IimGS~SD~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~a-a~LpgvvA~~T~~  137 (202)
                      .++.||+++.+---..++..+.|++.|+.++..+...+=+.+.+++.++.+++.++++||++-|++ --++..+|.+..+
T Consensus        31 ~r~lvvtd~~~~~~~~~~l~~~L~~~~i~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IiavGGGs~iD~aK~iA~~~~~  110 (366)
T d1jq5a_          31 NKTVVIADEIVWKIAGHTIVNELKKGNIAAEEVVFSGEASRNEVERIANIARKAEAAIVIGVGGGKTLDTAKAVADELDA  110 (366)
T ss_dssp             SEEEEEECHHHHHHTHHHHHHHHHTTTCEEEEEECCSSCBHHHHHHHHHHHHHTTCSEEEEEESHHHHHHHHHHHHHHTC
T ss_pred             CeEEEEECCcHHHHHHHHHHHHHHHCCCeEEEEEeCCCCCHHHHHHHHHHhhccCCcEEEEecCCccccchheeeecccc
Confidence            578999988765555678888999999998777777788888899999888888999999999885 4688999999999


Q ss_pred             cEEEecCCCC
Q 028883          138 LVIRVPLLSE  147 (202)
Q Consensus       138 PVIgVP~~~~  147 (202)
                      |+|.||+..+
T Consensus       111 p~i~IPTT~g  120 (366)
T d1jq5a_         111 YIVIVPTAAS  120 (366)
T ss_dssp             EEEEEESSCC
T ss_pred             eeeehhhhhh
Confidence            9999999754

>d1o2da_ e.22.1.2 (A:) Alcohol dehydrogenase TM0920 {Thermotoga maritima [TaxId: 2336]}

class: Multi-domain proteins (alpha and beta)
fold: Dehydroquinate synthase-like
superfamily: Dehydroquinate synthase-like
family: Iron-containing alcohol dehydrogenase
domain: Alcohol dehydrogenase TM0920
species: Thermotoga maritima [TaxId: 2336]

Probab=96.70  E-value=0.0027  Score=53.87  Aligned_cols=89  Identities=10%  Similarity=0.174  Sum_probs=71.3

Q ss_pred             CeEEEEecCCC--CHHHHHHHHHHHHHhCCCeEE-EEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCc-hhhhhhh-
Q 028883           59 PIVGIIMESDL--DLPVMNDAARTLSDFGVPYEI-KILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAH-LSGVAAA-  133 (202)
Q Consensus        59 ~~V~IimGS~S--D~~v~~~a~~~L~~~gi~~ev-~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~-LpgvvA~-  133 (202)
                      .++.||+|..+  -....++..+.|++.|+.+.+ .=...+-+-+.+++.++.+.+.++++||++-|++.. ++-.+|. 
T Consensus        29 ~k~liV~~~~~~~~~g~~~~v~~~L~~~~i~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGGs~iD~aK~ia~~  108 (359)
T d1o2da_          29 KRALVVTGKSSSKKNGSLDDLKKLLDETEISYEIFDEVEENPSFDNVMKAVERYRNDSFDFVVGLGGGSPMDFAKAVAVL  108 (359)
T ss_dssp             SEEEEEEESSGGGTSSHHHHHHHHHHHTTCEEEEEEEECSSCBHHHHHHHHHHHTTSCCSEEEEEESHHHHHHHHHHHHH
T ss_pred             CeEEEEEcCcHHHHhhHHHHHHHHHHHcCCeEEEEcCccCCCCHHHHHHhhhhccccCCceEEecccccchhHHHHHHHH
Confidence            47889998765  234789999999999998765 345678888999999999999999999999999654 5556654 


Q ss_pred             -----------------ccCCcEEEecCCCC
Q 028883          134 -----------------NSQILVIRVPLLSE  147 (202)
Q Consensus       134 -----------------~T~~PVIgVP~~~~  147 (202)
                                       ...+|+|.||+..+
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~~p~i~IPTt~g  139 (359)
T d1o2da_         109 LKEKDLSVEDLYDREKVKHWLPVVEIPTTAG  139 (359)
T ss_dssp             TTSTTCCSGGGGCGGGCCCCCCEEEEECSSC
T ss_pred             HhCCCCchhhccCcccccCCCCeEEeccccc
Confidence                             35599999999754

>d1vlja_ e.22.1.2 (A:) NADH-dependent butanol dehydrogenase A (TM0820) {Thermotoga maritima [TaxId: 2336]}

class: Multi-domain proteins (alpha and beta)
fold: Dehydroquinate synthase-like
superfamily: Dehydroquinate synthase-like
family: Iron-containing alcohol dehydrogenase
domain: NADH-dependent butanol dehydrogenase A (TM0820)
species: Thermotoga maritima [TaxId: 2336]

Probab=96.38  E-value=0.0046  Score=53.01  Aligned_cols=89  Identities=13%  Similarity=0.119  Sum_probs=67.5

Q ss_pred             CeEEEEecCCC--CHHHHHHHHHHHHHhCCCeEEE-EEccCCCchHHHHHHHHHhhcCceEEEEecCCcCc-hhhhhhh-
Q 028883           59 PIVGIIMESDL--DLPVMNDAARTLSDFGVPYEIK-ILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAH-LSGVAAA-  133 (202)
Q Consensus        59 ~~V~IimGS~S--D~~v~~~a~~~L~~~gi~~ev~-V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~-LpgvvA~-  133 (202)
                      .+|.||+|..+  .....++..+.|++.|+.+.+- -...+=+-+.+++.++.+.+.++++||++-|++.. .+-.+|. 
T Consensus        35 ~rvliVt~~~~~~~~g~~~~l~~~L~~~gi~~~~f~~v~~~pt~~~v~~~~~~~~~~~~D~IIavGGGs~iD~aK~ia~~  114 (398)
T d1vlja_          35 RKVLFLYGGGSIKKNGVYDQVVDSLKKHGIEWVEVSGVKPNPVLSKVHEAVEVAKKEKVEAVLGVGGGSVVDSAKAVAAG  114 (398)
T ss_dssp             CEEEEEECSSHHHHSSHHHHHHHHHHHTTCEEEEECCCCSSCBHHHHHHHHHHHHHTTCSEEEEEESHHHHHHHHHHHHH
T ss_pred             CeEEEEECCcHHHHhhHHHHHHHHHHhcCCeEEEEcCccCCCCHHHHHHHhhhcccccCceEEecCCcchhhHHHHHHHH
Confidence            47999998876  3347899999999999976532 13345566899999999988899999999999654 3444444 


Q ss_pred             -----------------ccCCcEEEecCCCC
Q 028883          134 -----------------NSQILVIRVPLLSE  147 (202)
Q Consensus       134 -----------------~T~~PVIgVP~~~~  147 (202)
                                       ...+|+|.||+..+
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~~P~i~iPTt~g  145 (398)
T d1vlja_         115 ALYEGDIWDAFIGKYQIEKALPIFDVLTISA  145 (398)
T ss_dssp             TTCSSCGGGGGGTSCCCCCCCCEEEEECSCS
T ss_pred             hhcccchHHhhcccccccCCCCeeeeecccc
Confidence                             33689999999653

>d2dria_ c.93.1.1 (A:) D-ribose-binding protein {Escherichia coli, strain k-12 [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like I
superfamily: Periplasmic binding protein-like I
family: L-arabinose binding protein-like
domain: D-ribose-binding protein
species: Escherichia coli, strain k-12 [TaxId: 562]

Probab=95.99  E-value=0.13  Score=38.78  Aligned_cols=84  Identities=14%  Similarity=0.273  Sum_probs=68.0

Q ss_pred             eEEEEecCCCC---HHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhh--hc
Q 028883           60 IVGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAA--AN  134 (202)
Q Consensus        60 ~V~IimGS~SD---~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA--~~  134 (202)
                      .||||+-+-+|   ..+.+.+.+.++++|+  ++.+...|..+++-.++++++..+|.+.+|........+...+.  ..
T Consensus         3 tIgvvvp~~~~~f~~~~~~gi~~~a~~~g~--~~~i~~~~~~~~~~~~~i~~~~~~~~d~ii~~~~~~~~~~~~~~~~~~   80 (271)
T d2dria_           3 TIALVVSTLNNPFFVSLKDGAQKEADKLGY--NLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQ   80 (271)
T ss_dssp             EEEEEESCSSSHHHHHHHHHHHHHHHHHTC--EEEEEECTTCHHHHHHHHHHHTTTTEEEEEECCSSTTTTHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHHHHHcCC--EEEEEeCCCCHHHHHHHHHHHHhcCCcccccccccccchHHHHHHHhh
Confidence            59999999888   5667778888899986  66788899999999999999999999988887766666666553  34


Q ss_pred             cCCcEEEecCC
Q 028883          135 SQILVIRVPLL  145 (202)
Q Consensus       135 T~~PVIgVP~~  145 (202)
                      ...|||.+...
T Consensus        81 ~~ipvV~~~~~   91 (271)
T d2dria_          81 ANIPVITLDRQ   91 (271)
T ss_dssp             TTCCEEEESSC
T ss_pred             cceeEEEeccc
Confidence            67899988643

>d1rrma_ e.22.1.2 (A:) Lactaldehyde reductase FucO {Escherichia coli [TaxId: 562]}

class: Multi-domain proteins (alpha and beta)
fold: Dehydroquinate synthase-like
superfamily: Dehydroquinate synthase-like
family: Iron-containing alcohol dehydrogenase
domain: Lactaldehyde reductase FucO
species: Escherichia coli [TaxId: 562]

Probab=95.89  E-value=0.0042  Score=52.88  Aligned_cols=88  Identities=13%  Similarity=0.198  Sum_probs=64.3

Q ss_pred             CeEEEEecCCC-CHHHHHHHHHHHHHhCCCeEEE-EEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchh----hhhh
Q 028883           59 PIVGIIMESDL-DLPVMNDAARTLSDFGVPYEIK-ILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLS----GVAA  132 (202)
Q Consensus        59 ~~V~IimGS~S-D~~v~~~a~~~L~~~gi~~ev~-V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~Lp----gvvA  132 (202)
                      .++.||+|... .....++..+.|++-|+.+++. =...|=+.+.+.+.++.+++.++++||++-|++.-=.    .+++
T Consensus        31 k~~Livt~~~~~~~g~~~~v~~~L~~~gi~~~vf~~v~~~p~~~~v~~~~~~~~~~~~D~IiaiGGGS~iD~aK~ia~~~  110 (385)
T d1rrma_          31 QKALIVTDKTLVQCGVVAKVTDKMDAAGLAWAIYDGVVPNPTITVVKEGLGVFQNSGADYLIAIGGGSPQDTCKAIGIIS  110 (385)
T ss_dssp             CEEEEECBHHHHHTTHHHHHHHHHHHTTCEEEEECBCCSSCBHHHHHHHHHHHHHHTCSEEEEEESHHHHHHHHHHHHHH
T ss_pred             CEEEEEECcchhhCcHHHHHHHHHHHcCCeEEEEcCccCCCCHHHHHHHhhhhhccCCCEEEecCCCchhhHHHHHHHHh
Confidence            47889987542 2346788999999999976541 1235778899999999999999999999999975321    1222


Q ss_pred             h-----------------ccCCcEEEecCCC
Q 028883          133 A-----------------NSQILVIRVPLLS  146 (202)
Q Consensus       133 ~-----------------~T~~PVIgVP~~~  146 (202)
                      .                 ...+|+|.||+..
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~lP~i~IPTta  141 (385)
T d1rrma_         111 NNPEFADVRSLEGLSPTNKPSVPILAIPTTA  141 (385)
T ss_dssp             HCGGGTTSGGGSEECCCCSCCSCEEEEECSS
T ss_pred             cCCccchhhhhhccccccCCCCceEeccccc
Confidence            1                 1248999999974

>d2bona1 e.52.1.2 (A:5-299) Lipid kinase YegS {Escherichia coli [TaxId: 562]}

class: Multi-domain proteins (alpha and beta)
fold: NAD kinase/diacylglycerol kinase-like
superfamily: NAD kinase/diacylglycerol kinase-like
family: Diacylglycerol kinase-like
domain: Lipid kinase YegS
species: Escherichia coli [TaxId: 562]

Probab=95.83  E-value=0.017  Score=46.72  Aligned_cols=81  Identities=19%  Similarity=0.279  Sum_probs=58.9

Q ss_pred             EEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhhc-----cC
Q 028883           62 GIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAAN-----SQ  136 (202)
Q Consensus        62 ~IimGS~SD~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~~-----T~  136 (202)
                      .|+=+-..+-...+++.+.|++.|+++++.+..-   +....++++++..+++++ |+++|+.+.+--++.++     ..
T Consensus         5 ~i~N~~s~~~~~~~~~~~~l~~~g~~~~v~~T~~---~g~a~~~~~~~~~~~~d~-Ivv~GGDGTv~ev~~gl~~~~~~~   80 (295)
T d2bona1           5 LILNGKSTDNLPLREAIMLLREEGMTIHVRVTWE---KGDAARYVEEARKFGVAT-VIAGGGDGTINEVSTALIQCEGDD   80 (295)
T ss_dssp             EEECSSSTTCHHHHHHHHHHHTTTCCEEEEECCS---TTHHHHHHHHHHHHTCSE-EEEEESHHHHHHHHHHHHHCCSSC
T ss_pred             EEECCCCCCchHHHHHHHHHHHCCCEEEEEEcCC---cchHHHHHHHHHhcCCCE-EEEECCCcHHHHHHHHHHhccCCC
Confidence            3344444444567889999999999999888643   467788999988888886 56678899888888764     34


Q ss_pred             CcEEEe-cCCC
Q 028883          137 ILVIRV-PLLS  146 (202)
Q Consensus       137 ~PVIgV-P~~~  146 (202)
                      .|.||| |.-+
T Consensus        81 ~p~lgilP~GT   91 (295)
T d2bona1          81 IPALGILPLGT   91 (295)
T ss_dssp             CCEEEEEECSS
T ss_pred             CceEEEEECCc
Confidence            577776 5444

>d2pjua1 c.92.3.1 (A:11-196) Propionate catabolism operon regulatory protein PrpR {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Chelatase-like
superfamily: PrpR receptor domain-like
family: PrpR receptor domain-like
domain: Propionate catabolism operon regulatory protein PrpR
species: Escherichia coli [TaxId: 562]

Probab=94.99  E-value=0.11  Score=40.80  Aligned_cols=116  Identities=14%  Similarity=0.118  Sum_probs=76.5

Q ss_pred             HHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHH-HhhcCceEEEEecCCcCchhhhhhhccCCcEEEecCCCCCCChhh
Q 028883           75 NDAARTLSDFGVPYEIKILPPHQNCKEALSYALS-AKERGIKIIIVGDGVEAHLSGVAAANSQILVIRVPLLSEDWSEDD  153 (202)
Q Consensus        75 ~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~-~~~~g~~ViIa~AG~aa~LpgvvA~~T~~PVIgVP~~~~~l~G~D  153 (202)
                      +-..++..+|.=..|+.|..  ++.+...+.+.+ .+..+++|||+-.|.    +.++-.+++.|||-++++     |.|
T Consensus        14 ~l~~~i~~ey~~~~~i~v~~--~~~e~av~~~~~~~~~~~~DviISRG~t----a~~ir~~~~iPVV~I~vs-----~~D   82 (186)
T d2pjua1          14 ELFRDISLEFDHLANITPIQ--LGFEKAVTYIRKKLANERCDAIIAAGSN----GAYLKSRLSVPVILIKPS-----GYD   82 (186)
T ss_dssp             HHHHHHHTTTTTTCEEEEEC--CCHHHHHHHHHHHTTTSCCSEEEEEHHH----HHHHHTTCSSCEEEECCC-----HHH
T ss_pred             HHHHHHHHHhcCCceEEeec--CcHHHHHHHHHHHHHcCCCCEEEECchH----HHHHHHhCCCCEEEEcCC-----HhH
Confidence            33455556666555666553  456666665544 566789999996554    345677889999998864     577


Q ss_pred             HHHhhcCCC--CCeeeEEecCChhhHHHHHHHHHccC--------CHHHHHHHHHHHh
Q 028883          154 VINSIRMPS--HVQVASVPRNNAKNAALYAVKVLGIA--------DEDLLERIRKYVE  201 (202)
Q Consensus       154 LlS~vqMP~--GvpVatV~I~n~~NAAl~Aa~IL~~~--------d~~l~~kl~~~~~  201 (202)
                      ++..|+-..  +-.+++|+-.|-....-.-.++|++.        .++++..+++.++
T Consensus        83 il~al~~a~~~~~kiavV~~~~~~~~~~~~~~ll~~~i~~~~~~~~~e~~~~v~~l~~  140 (186)
T d2pjua1          83 VLQFLAKAGKLTSSIGVVTYQETIPALVAFQKTFNLRLDQRSYITEEDARGQINELKA  140 (186)
T ss_dssp             HHHHHHHTTCTTSCEEEEEESSCCHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCEEEEeCCccchHHHHHHHHhCCceEEEEecCHHHHHHHHHHHHH
Confidence            334433222  23589998888888777778888862        3567777776654

>d2nzug1 c.93.1.1 (G:58-332) Glucose-resistance amylase regulator CcpA, C-terminal domain {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like I
superfamily: Periplasmic binding protein-like I
family: L-arabinose binding protein-like
domain: Glucose-resistance amylase regulator CcpA, C-terminal domain
species: Bacillus megaterium [TaxId: 1404]

Probab=93.85  E-value=0.94  Score=34.17  Aligned_cols=84  Identities=14%  Similarity=0.130  Sum_probs=61.9

Q ss_pred             CCeEEEEecCCCCH---HHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhhc
Q 028883           58 APIVGIIMESDLDL---PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAAN  134 (202)
Q Consensus        58 ~~~V~IimGS~SD~---~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~~  134 (202)
                      ...||||+-+-+|-   .+.+.+.+.+++.|+  .+.+...+..+++-.++++.+..++++-+|........----....
T Consensus         3 t~tIgvvvp~l~~~f~~~~~~gi~~~~~~~g~--~~~~~~~~~~~~~e~~~i~~~~~~~vdgii~~~~~~~~~~~~~l~~   80 (275)
T d2nzug1           3 TTTVGVIIPDISNIFYAELARGIEDIATMYKY--NIILSNSDQNQDKELHLLNNMLGKQVDGIIFMSGNVTEEHVEELKK   80 (275)
T ss_dssp             CSEEEEEESCTTSHHHHHHHHHHHHHHHHTTC--EEEEEECTTCHHHHHHHHHHHHTTCCSEEEECCSCCCHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHHHHHcCC--EEEEEECCCCHHHHHHHHHHHHhcCCceeeccccchhhHHHHHHhh
Confidence            46799999877773   455777788888886  6788889999999999999888888887776665544333333445


Q ss_pred             cCCcEEEec
Q 028883          135 SQILVIRVP  143 (202)
Q Consensus       135 T~~PVIgVP  143 (202)
                      ...||+-+=
T Consensus        81 ~~~pvv~~~   89 (275)
T d2nzug1          81 SPVPVVLAA   89 (275)
T ss_dssp             CSSCEEEES
T ss_pred             ccccccccc
Confidence            677877654

>d1kq3a_ e.22.1.2 (A:) Glycerol dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Multi-domain proteins (alpha and beta)
fold: Dehydroquinate synthase-like
superfamily: Dehydroquinate synthase-like
family: Iron-containing alcohol dehydrogenase
domain: Glycerol dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=93.71  E-value=0.0057  Score=51.20  Aligned_cols=86  Identities=12%  Similarity=0.121  Sum_probs=57.8

Q ss_pred             CeEEEEecCCCCH-HHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcC-chhhhhhhccC
Q 028883           59 PIVGIIMESDLDL-PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEA-HLSGVAAANSQ  136 (202)
Q Consensus        59 ~~V~IimGS~SD~-~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa-~LpgvvA~~T~  136 (202)
                      .++.||+++.... ...++..+.|++.|+.+  .+.+ |-.|+...+-+..+.+.++++||++-|++. -++..+|-+..
T Consensus        31 ~r~lvVt~~~~~~~~~~~~v~~~L~~~~i~~--~v~~-~~~~~~~i~~~~~~~~~~~D~IIavGGGs~~D~aK~ia~~~~  107 (364)
T d1kq3a_          31 ERAFVVIDDFVDKNVLGENFFSSFTKVRVNK--QIFG-GECSDEEIERLSGLVEEETDVVVGIGGGKTLDTAKAVAYKLK  107 (364)
T ss_dssp             SEEEEEECHHHHHHTTCTTGGGGCSSSEEEE--EECC-SSCBHHHHHHHHTTCCTTCCEEEEEESHHHHHHHHHHHHHTT
T ss_pred             CeEEEEECCchhhhHHHHHHHHHHHhcCCeE--EecC-CCCCcHHHHHHHHHhhccCcEEEEeccCccceeecccccccc
Confidence            4788998764432 23345555666656544  3444 344444444455566677899999998854 57788889999


Q ss_pred             CcEEEecCCCC
Q 028883          137 ILVIRVPLLSE  147 (202)
Q Consensus       137 ~PVIgVP~~~~  147 (202)
                      +|+|.||+..+
T Consensus       108 ~P~I~IPTTa~  118 (364)
T d1kq3a_         108 KPVVIVPTIAS  118 (364)
T ss_dssp             CCEEEEESSCC
T ss_pred             ccceeeccccc
Confidence            99999999754

>d1oj7a_ e.22.1.2 (A:) Hypothetical oxidoreductase yqhD {Escherichia coli [TaxId: 562]}

class: Multi-domain proteins (alpha and beta)
fold: Dehydroquinate synthase-like
superfamily: Dehydroquinate synthase-like
family: Iron-containing alcohol dehydrogenase
domain: Hypothetical oxidoreductase yqhD
species: Escherichia coli [TaxId: 562]

Probab=93.65  E-value=0.024  Score=48.34  Aligned_cols=86  Identities=16%  Similarity=0.112  Sum_probs=59.7

Q ss_pred             CeEEEEecCCC--CHHHHHHHHHHHHHhCCCeEE-EEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCc-hhhhhhhc
Q 028883           59 PIVGIIMESDL--DLPVMNDAARTLSDFGVPYEI-KILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAH-LSGVAAAN  134 (202)
Q Consensus        59 ~~V~IimGS~S--D~~v~~~a~~~L~~~gi~~ev-~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~-LpgvvA~~  134 (202)
                      .+|.||+|..+  ...+.+++...|+  |+.+.+ .=+..|-+-+.+++.++.+.+.++++||++-|++.. ++-.++..
T Consensus        33 ~~vliV~~~~~~~~~g~~~~v~~~L~--~~~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGGs~iD~aK~ia~~  110 (390)
T d1oj7a_          33 ARVLITYGGGSVKKTGVLDQVLDALK--GMDVLEFGGIEPNPAYETLMNAVKLVREQKVTFLLAVGGGSVLDGTKFIAAA  110 (390)
T ss_dssp             CEEEEEECSSHHHHHSHHHHHHHHTT--TSEEEEECCCCSSCBHHHHHHHHHHHHHHTCCEEEEEESHHHHHHHHHHHHH
T ss_pred             CCEEEEECCchHHHccHHHHHHHHcC--CCcEEEEeCccCCCCHHHHHHHHHHHhhcCCCEEEecCCCccccHHHHHHHH
Confidence            58999998875  3445677766665  443332 112468788899999999998899999999999653 22233322


Q ss_pred             ---------------------cCCcEEEecCCC
Q 028883          135 ---------------------SQILVIRVPLLS  146 (202)
Q Consensus       135 ---------------------T~~PVIgVP~~~  146 (202)
                                           ..+|+|.||+..
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~P~i~VPTta  143 (390)
T d1oj7a_         111 ANYPENIDPWHILQTGGKEIKSAIPMGCVLTLP  143 (390)
T ss_dssp             TTSCTTSCTTHHHHTTTTTCCCCCCEEEEESSC
T ss_pred             hcCCcccchhhhhcccccccccCCCcccccccc
Confidence                                 236999999964

>d1tjya_ c.93.1.1 (A:) AI-2 receptor LsrB {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like I
superfamily: Periplasmic binding protein-like I
family: L-arabinose binding protein-like
domain: AI-2 receptor LsrB
species: Salmonella typhi [TaxId: 90370]

Probab=93.30  E-value=0.42  Score=36.40  Aligned_cols=85  Identities=14%  Similarity=0.080  Sum_probs=64.6

Q ss_pred             CCeEEEEecCCCC---HHHHHHHHHHHHHhCCCeEEEEE-ccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhh--
Q 028883           58 APIVGIIMESDLD---LPVMNDAARTLSDFGVPYEIKIL-PPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVA--  131 (202)
Q Consensus        58 ~~~V~IimGS~SD---~~v~~~a~~~L~~~gi~~ev~V~-SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~Lpgvv--  131 (202)
                      ..+|++|.-+.++   ..+.+.+.+.++++|+.  +.+. ..+..+++-.+.++++..++.+.||....-...+...+  
T Consensus         3 ~~kI~~i~~~~~npf~~~~~~g~~~~a~~~G~~--v~~~~~~~~d~~~q~~~i~~~i~~~~dgIIi~~~~~~~~~~~~~~   80 (316)
T d1tjya_           3 AERIAFIPKLVGVGFFTSGGNGAQEAGKALGID--VTYDGPTEPSVSGQVQLVNNFVNQGYDAIIVSAVSPDGLCPALKR   80 (316)
T ss_dssp             CCEEEEECSSSSSHHHHHHHHHHHHHHHHHTCE--EEECCCSSCCHHHHHHHHHHHHHTTCSEEEECCSSSSTTHHHHHH
T ss_pred             CCEEEEEeCCCCCHHHHHHHHHHHHHHHHcCCE--EEEEECCCCCHHHHHHHHHHHHhcCCCeeeecccccchhhhhhhh
Confidence            3589999888777   45667788888899974  4444 47788999999999998899998888877766666555  


Q ss_pred             hhccCCcEEEecC
Q 028883          132 AANSQILVIRVPL  144 (202)
Q Consensus       132 A~~T~~PVIgVP~  144 (202)
                      +.....||+.+-.
T Consensus        81 a~~~gi~vv~~d~   93 (316)
T d1tjya_          81 AMQRGVKILTWDS   93 (316)
T ss_dssp             HHHTTCEEEEESS
T ss_pred             hhcccccceeccc
Confidence            4456678887754

>d1dbqa_ c.93.1.1 (A:) Purine repressor (PurR), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like I
superfamily: Periplasmic binding protein-like I
family: L-arabinose binding protein-like
domain: Purine repressor (PurR), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=92.80  E-value=1.4  Score=33.08  Aligned_cols=84  Identities=10%  Similarity=0.107  Sum_probs=60.9

Q ss_pred             eEEEEecCCCCH---HHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEec-CCcCchhhhhhhcc
Q 028883           60 IVGIIMESDLDL---PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGD-GVEAHLSGVAAANS  135 (202)
Q Consensus        60 ~V~IimGS~SD~---~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~A-G~aa~LpgvvA~~T  135 (202)
                      .||+|.-+.+|-   .+++.+.+.+++.|.  .+.+...+..+++..++++.+..++++.+|... .......-.....-
T Consensus         2 tIg~i~~~~~~pf~~~~~~gi~~~~~~~gy--~~~~~~~~~d~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~   79 (282)
T d1dbqa_           2 SIGLLATSSEAAYFAEIIEAVEKNCFQKGY--TLILGNAWNNLEKQRAYLSMMAQKRVDGLLVMCSEYPEPLLAMLEEYR   79 (282)
T ss_dssp             EEEEEESCTTSHHHHHHHHHHHHHHHHHTC--EEEEEECTTCHHHHHHHHHHHHHTTCSEEEEECSCCCHHHHHHHHHTT
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHHHHHcCC--EEEEEeCCCCHHHHHHHHHHHHhcCCCEEeeecccccchhhhhHHhhc
Confidence            588888877773   445677778888885  677888899999999999999989998655544 44444444444455


Q ss_pred             CCcEEEecCC
Q 028883          136 QILVIRVPLL  145 (202)
Q Consensus       136 ~~PVIgVP~~  145 (202)
                      ..||+.+-..
T Consensus        80 ~iPvV~~~~~   89 (282)
T d1dbqa_          80 HIPMVVMDWG   89 (282)
T ss_dssp             TSCEEEEECS
T ss_pred             CCCceEEEec
Confidence            7888887543

>d1byka_ c.93.1.1 (A:) Trehalose repressor, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like I
superfamily: Periplasmic binding protein-like I
family: L-arabinose binding protein-like
domain: Trehalose repressor, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=92.40  E-value=0.61  Score=35.61  Aligned_cols=60  Identities=15%  Similarity=0.133  Sum_probs=49.3

Q ss_pred             CeEEEEecCCCCH---HHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEe
Q 028883           59 PIVGIIMESDLDL---PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVG  120 (202)
Q Consensus        59 ~~V~IimGS~SD~---~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~  120 (202)
                      ..||||.-+.++.   ...+.+.+.|++.|  |.+-++..+..+++..++++.+..++++-||..
T Consensus         3 k~Igvi~p~~~~~~~~~~~~~i~~~~~~~G--y~~~~~~s~~d~~~~~~~i~~l~~~~vdgiIi~   65 (255)
T d1byka_           3 KVVAIIVTRLDSLSENLAVQTMLPAFYEQG--YDPIMMESQFSPQLVAEHLGVLKRRNIDGVVLF   65 (255)
T ss_dssp             CEEEEEESCTTCHHHHHHHHHHHHHHHHHT--CEEEEEECTTCHHHHHHHHHHHHTTTCCEEEEE
T ss_pred             CEEEEEeCCCCCHHHHHHHHHHHHHHHHcC--CEEEEEeCCCCHHHHHHHHHHHHhccccceeec
Confidence            5799999877776   56677778888888  577788889999999999999988888866654

>d1guda_ c.93.1.1 (A:) D-allose-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like I
superfamily: Periplasmic binding protein-like I
family: L-arabinose binding protein-like
domain: D-allose-binding protein
species: Escherichia coli [TaxId: 562]

Probab=92.37  E-value=0.95  Score=34.38  Aligned_cols=86  Identities=12%  Similarity=0.104  Sum_probs=65.6

Q ss_pred             CeEEEEecCCCCH---HHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhh--h
Q 028883           59 PIVGIIMESDLDL---PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAA--A  133 (202)
Q Consensus        59 ~~V~IimGS~SD~---~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA--~  133 (202)
                      .+.+||+.+-+|-   .+.+.+.+.++++|..+.+-....+-.+++-.+.++++..++++.||.....+..+...+.  .
T Consensus         2 ~~~a~i~~~~~npff~~i~~g~~~~a~~~g~~~~i~~~~~~~d~~~q~~~i~~~i~~~~DgIi~~~~~~~~~~~~l~~~~   81 (288)
T d1guda_           2 AEYAVVLKTLSNPFWVDMKKGIEDEAKTLGVSVDIFASPSEGDFQSQLQLFEDLSNKNYKGIAFAPLSSVNLVMPVARAW   81 (288)
T ss_dssp             CEEEEEESCSSSHHHHHHHHHHHHHHHHHTCCEEEEECSSTTCHHHHHHHHHHHHTSSEEEEEECCSSSSTTHHHHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHHHHHhcCCCEEEEecCCcchhhHHHHHHH
Confidence            3678999988883   4555667777889987777667788888888888899989999988888777666666553  3


Q ss_pred             ccCCcEEEecC
Q 028883          134 NSQILVIRVPL  144 (202)
Q Consensus       134 ~T~~PVIgVP~  144 (202)
                      .-..|||.+-.
T Consensus        82 ~~gipvv~~d~   92 (288)
T d1guda_          82 KKGIYLVNLDE   92 (288)
T ss_dssp             HTTCEEEEESS
T ss_pred             hCCCeEEEeCC
Confidence            57789988643

>d1mjha_ c.26.2.4 (A:) "Hypothetical" protein MJ0577 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: Universal stress protein-like
domain: "Hypothetical" protein MJ0577
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=89.91  E-value=0.84  Score=32.25  Aligned_cols=66  Identities=21%  Similarity=0.211  Sum_probs=43.4

Q ss_pred             HHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhh--------hhhhccCCcEEEecCCC
Q 028883           77 AARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSG--------VAAANSQILVIRVPLLS  146 (202)
Q Consensus        77 a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~Lpg--------vvA~~T~~PVIgVP~~~  146 (202)
                      ....+++.|++++..+..-    +-...+.+.+++.+++.||.+.-+.+.+..        =+.-++++||+-||.++
T Consensus        86 ~~~~~~~~gv~~~~~~~~G----~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~GS~a~~vl~~s~~pVlvV~~~~  159 (160)
T d1mjha_          86 IKKELEDVGFKVKDIIVVG----IPHEEIVKIAEDEGVDIIIMGSHGKTNLKEILLGSVTENVIKKSNKPVLVVKRKN  159 (160)
T ss_dssp             HHHHHHHTTCEEEEEEEEE----CHHHHHHHHHHHTTCSEEEEESCCSSCCTTCSSCHHHHHHHHHCCSCEEEECCCC
T ss_pred             HHHHHHhcCCeEEEEEEec----cHHHHHhhhhhccccceEEeccCCCCcccccccCcHHHHHHhcCCCCEEEEcCCC
Confidence            3444567788888877754    234456666667889999988644433333        23446899999999765

>d1zl0a2 c.23.16.7 (A:3-169) LD-carboxypeptidase A, N-terminal domain {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: LD-carboxypeptidase A N-terminal domain-like
domain: LD-carboxypeptidase A, N-terminal domain
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=88.94  E-value=0.88  Score=34.98  Aligned_cols=82  Identities=20%  Similarity=0.149  Sum_probs=59.5

Q ss_pred             eEEEEe-cCCCCHHHHHHHHHHHHHhCCCeEEE--EEccC-----CCchHHHHHHHHHhhcCceEEEEecCCcCc---hh
Q 028883           60 IVGIIM-ESDLDLPVMNDAARTLSDFGVPYEIK--ILPPH-----QNCKEALSYALSAKERGIKIIIVGDGVEAH---LS  128 (202)
Q Consensus        60 ~V~Iim-GS~SD~~v~~~a~~~L~~~gi~~ev~--V~SaH-----Rtp~~l~~~~~~~~~~g~~ViIa~AG~aa~---Lp  128 (202)
                      +|+||. +|.-|.+..+.+.+.|+++|....+.  +-.-|     ---+|+.++..-+.+..+++|+++-|+-+.   ||
T Consensus        15 ~I~iiAPS~~~~~~~l~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~~dp~i~aI~~~rGGyGa~rlL~   94 (167)
T d1zl0a2          15 RVALIAPASAIATDVLEATLRQLEVHGVDYHLGRHVEARYRYLAGTVEQRLEDLHNAFDMPDITAVWCLRGGYGCGQLLP   94 (167)
T ss_dssp             EEEEECCSBCCCHHHHHHHHHHHHHTTCCEEECTTTTCCBTTBSSCHHHHHHHHHHHHHSTTEEEEEESCCSSCGGGGTT
T ss_pred             EEEEEeCCCcCCHHHHHHHHHHHHHCCCEEEECcccccccCcccCCHHHHHHHHHHhccCcCCCEEEECccHHHHHHHHh
Confidence            799997 67789999999999999999875542  11111     113567777776677789999999999664   34


Q ss_pred             h----hhhhccCCcEEE
Q 028883          129 G----VAAANSQILVIR  141 (202)
Q Consensus       129 g----vvA~~T~~PVIg  141 (202)
                      -    .+....++++||
T Consensus        95 ~lD~~~i~~~~pK~~iG  111 (167)
T d1zl0a2          95 GLDWGRLQAASPRPLIG  111 (167)
T ss_dssp             TCCHHHHHHSCCCCEEE
T ss_pred             hcchhhhhhcCCCEEEE
Confidence            2    344456788887

>d1sg6a_ e.22.1.1 (A:) Dehydroquinate synthase, DHQS {Aspergillus nidulans [TaxId: 162425]}

class: Multi-domain proteins (alpha and beta)
fold: Dehydroquinate synthase-like
superfamily: Dehydroquinate synthase-like
family: Dehydroquinate synthase, DHQS
domain: Dehydroquinate synthase, DHQS
species: Aspergillus nidulans [TaxId: 162425]

Probab=88.72  E-value=0.25  Score=42.26  Aligned_cols=87  Identities=9%  Similarity=0.084  Sum_probs=64.9

Q ss_pred             CeEEEEecCCCCHHHHHHHHHHHHHhCCC----eEE--EEEc---cCCCchHHHHHHHHHhhcCc-----eEEEEecCC-
Q 028883           59 PIVGIIMESDLDLPVMNDAARTLSDFGVP----YEI--KILP---PHQNCKEALSYALSAKERGI-----KIIIVGDGV-  123 (202)
Q Consensus        59 ~~V~IimGS~SD~~v~~~a~~~L~~~gi~----~ev--~V~S---aHRtp~~l~~~~~~~~~~g~-----~ViIa~AG~-  123 (202)
                      .++.||+...-.--+.++..+.|++.|+.    +.+  .+.-   .+++.+.+.++.+.+.++++     ++||++.|+ 
T Consensus        34 ~~~~ivtD~~v~~l~~~~v~~~l~~~~~~~~~~~~~~~~~~~~gE~~Ks~~~~~~i~~~~~~~~~~~~r~d~IiaiGGG~  113 (389)
T d1sg6a_          34 TTYVLVTDTNIGSIYTPSFEEAFRKRAAEITPSPRLLIYNRPPGEVSKSRQTKADIEDWMLSQNPPCGRDTVVIALGGGV  113 (389)
T ss_dssp             SEEEEEEEHHHHHHHHHHHHHHHHHHHHHSSSCCEEEEEEECSSGGGSSHHHHHHHHHHHHTSSSCCCTTCEEEEEESHH
T ss_pred             CcEEEEECCchHHHHHHHHHHHHHHhCcccccCcceEEEEecCCcccCCHHHHHHHHHHHHhcCCCcCCCceEEEeccch
Confidence            57889987776666777888889876543    222  2222   58899999999888766652     577777776 


Q ss_pred             cCchhhhhhh--ccCCcEEEecCC
Q 028883          124 EAHLSGVAAA--NSQILVIRVPLL  145 (202)
Q Consensus       124 aa~LpgvvA~--~T~~PVIgVP~~  145 (202)
                      ..-++|++|+  +..+|.|.||+.
T Consensus       114 v~D~ak~~A~~y~rgi~~i~vPTt  137 (389)
T d1sg6a_         114 IGDLTGFVASTYMRGVRYVQVPTT  137 (389)
T ss_dssp             HHHHHHHHHHHGGGCCEEEEEECS
T ss_pred             HHHHHHHHHHHHhcCCceeEeccc
Confidence            7889999997  468999999996

>d3etja1 b.84.2.1 (A:277-355) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), C-domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Rudiment single hybrid motif
family: BC C-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), C-domain
species: Escherichia coli [TaxId: 562]

Probab=88.43  E-value=0.049  Score=37.96  Aligned_cols=25  Identities=12%  Similarity=0.028  Sum_probs=22.6

Q ss_pred             eeecCceeEecCChhhhhhccccCc
Q 028883           13 TVSRGTIPVLASSNGSATSRRKDDS   37 (202)
Q Consensus        13 ~~~~ghi~v~~~~~~~~~~~~~~~~   37 (202)
                      .|-|||||+++.|.+++.++++.+.
T Consensus        36 gRKmGHitl~~~~~~~l~~~~~~l~   60 (79)
T d3etja1          36 GRKVGHLNLTDSDTSRLTATLEALI   60 (79)
T ss_dssp             TCEEEEEEEECSCHHHHHHHHHHHG
T ss_pred             CCcEEEEEeecCCHHHHHHHHHHHH
Confidence            5789999999999999999988876

>d2qv7a1 e.52.1.2 (A:1-312) Diacylglycerol kinase DgkB {Staphylococcus aureus [TaxId: 1280]}

class: Multi-domain proteins (alpha and beta)
fold: NAD kinase/diacylglycerol kinase-like
superfamily: NAD kinase/diacylglycerol kinase-like
family: Diacylglycerol kinase-like
domain: Diacylglycerol kinase DgkB
species: Staphylococcus aureus [TaxId: 1280]

Probab=88.10  E-value=0.92  Score=36.17  Aligned_cols=83  Identities=18%  Similarity=0.127  Sum_probs=56.8

Q ss_pred             eEEEEe----cCCCCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhhc-
Q 028883           60 IVGIIM----ESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAAN-  134 (202)
Q Consensus        60 ~V~Iim----GS~SD~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~~-  134 (202)
                      ++.||.    |+..-....+++.+.|++.|+.+++...   ..+....++++++..++.++|| ++|+.+.+--++.++ 
T Consensus         4 r~~vi~NP~SG~~~~~~~~~~~~~~l~~~~~~~~~~~t---~~~~~~~~~~~~~~~~~~d~iv-v~GGDGTv~~v~~~l~   79 (312)
T d2qv7a1           4 RARIIYNPTSGKEQFKRELPDALIKLEKAGYETSAYAT---EKIGDATLEAERAMHENYDVLI-AAGGDGTLNEVVNGIA   79 (312)
T ss_dssp             EEEEEECTTSTTSCHHHHHHHHHHHHHHTTEEEEEEEC---CSTTHHHHHHHHHTTTTCSEEE-EEECHHHHHHHHHHHT
T ss_pred             eEEEEECcCCCCCcHHHHHHHHHHHHHHCCCeEEEEEc---CCccHHHHHHHHHHHcCCCEEE-EEcCCcHHHHHHHHHH
Confidence            455555    4444456678888889888887776654   3456788888888888888755 578898888888775 


Q ss_pred             --cCCcEEEe-cCCC
Q 028883          135 --SQILVIRV-PLLS  146 (202)
Q Consensus       135 --T~~PVIgV-P~~~  146 (202)
                        -..|-|++ |.-+
T Consensus        80 ~~~~~~~l~iiP~GT   94 (312)
T d2qv7a1          80 EKPNRPKLGVIPMGT   94 (312)
T ss_dssp             TCSSCCEEEEEECSS
T ss_pred             hhccccceEEeecCC
Confidence              23344554 6544

>d2fvya1 c.93.1.1 (A:2-306) Galactose/glucose-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like I
superfamily: Periplasmic binding protein-like I
family: L-arabinose binding protein-like
domain: Galactose/glucose-binding protein
species: Escherichia coli [TaxId: 562]

Probab=88.01  E-value=3.6  Score=30.84  Aligned_cols=85  Identities=9%  Similarity=0.051  Sum_probs=63.6

Q ss_pred             CeEEEEecCCCCHHHHHHHHHHHHH----hCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhh-
Q 028883           59 PIVGIIMESDLDLPVMNDAARTLSD----FGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAA-  133 (202)
Q Consensus        59 ~~V~IimGS~SD~~v~~~a~~~L~~----~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~-  133 (202)
                      -+|||++...+| ++.....+-+++    . -.+++.+......+++..+.++++.+++.+.||...-....+...+.. 
T Consensus         2 ~kIgv~~~~~~~-~f~~~i~~gi~~~a~~~-~~~~l~~~~~~~~~~~q~~~i~~li~~~vDgiii~~~~~~~~~~~~~~~   79 (305)
T d2fvya1           2 TRIGVTIYKYDD-NFMSVVRKAIEQDAKAA-PDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKA   79 (305)
T ss_dssp             EEEEEEESCTTS-HHHHHHHHHHHHHHHTC-TTEEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSSGGGHHHHHHHH
T ss_pred             cEEEEEeCCCCC-HHHHHHHHHHHHHHHHc-CCcEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEeecccccccHHHHHHH
Confidence            379999988777 555555555543    3 257888899999999999999999889999988877666666665544 


Q ss_pred             -ccCCcEEEecCC
Q 028883          134 -NSQILVIRVPLL  145 (202)
Q Consensus       134 -~T~~PVIgVP~~  145 (202)
                       ....||+.+...
T Consensus        80 ~~~~ipvv~~~~~   92 (305)
T d2fvya1          80 RGQNVPVVFFNKE   92 (305)
T ss_dssp             HTTTCCEEEESSC
T ss_pred             HhcCCceeeeeec
Confidence             466888887543

>d1ujna_ e.22.1.1 (A:) Dehydroquinate synthase, DHQS {Thermus thermophilus [TaxId: 274]}

class: Multi-domain proteins (alpha and beta)
fold: Dehydroquinate synthase-like
superfamily: Dehydroquinate synthase-like
family: Dehydroquinate synthase, DHQS
domain: Dehydroquinate synthase, DHQS
species: Thermus thermophilus [TaxId: 274]

Probab=87.80  E-value=0.89  Score=37.84  Aligned_cols=83  Identities=16%  Similarity=0.150  Sum_probs=58.1

Q ss_pred             CeEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEc--cCCCchHHHHHHHHHhhcCc---eEEEEecCC-cCchhhhhh
Q 028883           59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILP--PHQNCKEALSYALSAKERGI---KIIIVGDGV-EAHLSGVAA  132 (202)
Q Consensus        59 ~~V~IimGS~SD~~v~~~a~~~L~~~gi~~ev~V~S--aHRtp~~l~~~~~~~~~~g~---~ViIa~AG~-aa~LpgvvA  132 (202)
                      .++.||+...    +.+-..+.++.+.-.+-+.+-.  .+++.+.+.++.+.+.+.++   +++|++.|+ -.-++|++|
T Consensus        29 ~k~~iV~D~~----V~~~~~~~~~~l~~~~i~~i~~gE~~Ksl~~~~~i~~~l~~~~~~r~~~iiaiGGG~v~D~agf~A  104 (347)
T d1ujna_          29 GPAALLFDRR----VEGFAQEVAKALGVRHLLGLPGGEAAKSLEVYGKVLSWLAEKGLPRNATLLVVGGGTLTDLGGFVA  104 (347)
T ss_dssp             SCEEEEEEGG----GHHHHHHHHHHHTCCCEEEECCSGGGSSHHHHHHHHHHHHHHTCCTTCEEEEEESHHHHHHHHHHH
T ss_pred             CCEEEEECcc----HHHHHHHHHHhcCCceEEEECCCcccCCHHHHHHHHHHHHHhhcccccceeEeechhhhhHHHHHh
Confidence            3577887544    3444455566666554333332  58899999998887766555   577777666 778999999


Q ss_pred             h--ccCCcEEEecCC
Q 028883          133 A--NSQILVIRVPLL  145 (202)
Q Consensus       133 ~--~T~~PVIgVP~~  145 (202)
                      +  +...|.|-||+.
T Consensus       105 ~~y~rgi~~i~vPTt  119 (347)
T d1ujna_         105 ATYLRGVAYLAFPTT  119 (347)
T ss_dssp             HHBTTCCEEEEEECS
T ss_pred             hhhcCCcceeeccch
Confidence            5  579999999985

>d2gm3a1 c.26.2.4 (A:5-175) Putative ethylene-responsive protein AT3g01520/F4P13_7 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: Universal stress protein-like
domain: Putative ethylene-responsive protein AT3g01520/F4P13 7
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=87.56  E-value=0.96  Score=32.72  Aligned_cols=70  Identities=13%  Similarity=0.102  Sum_probs=44.4

Q ss_pred             HHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhh--------hhhccCCcEEEecC
Q 028883           73 VMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGV--------AAANSQILVIRVPL  144 (202)
Q Consensus        73 v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~Lpgv--------vA~~T~~PVIgVP~  144 (202)
                      .+++....++..|++++..+..  ..|  ...+.+.+++.+++.||.++-+-+.|..+        +.-++++||+-||.
T Consensus        84 ~l~~~~~~~~~~~~~~~~~v~~--G~~--~~~I~~~a~~~~~dlIV~G~~g~~~~~~~~lGSv~~~vi~~~~cpVlvV~~  159 (171)
T d2gm3a1          84 LLEFFVNKCHEIGVGCEAWIKT--GDP--KDVICQEVKRVRPDFLVVGSRGLGRFQKVFVGTVSAFCVKHAECPVMTIKR  159 (171)
T ss_dssp             HHHHHHHHHHHHTCEEEEEEEE--SCH--HHHHHHHHHHHCCSEEEEEECCCC--------CHHHHHHHHCSSCEEEEEC
T ss_pred             HHHHHHHHHHhcCCceEEEEEe--CCh--HHHHHHHHhhcCCcEEEeccCCccccccCccCcHHHHHHhCCCCCEEEEeC
Confidence            4455566667789988877653  223  44556666677888888877666666553        33467899999987


Q ss_pred             CC
Q 028883          145 LS  146 (202)
Q Consensus       145 ~~  146 (202)
                      ..
T Consensus       160 ~~  161 (171)
T d2gm3a1         160 NA  161 (171)
T ss_dssp             CG
T ss_pred             CC
Confidence            64

>d1jx6a_ c.93.1.1 (A:) Quorum-sensing signal (autoinducer-2) binding protein LuxP {Vibrio harveyi [TaxId: 669]}

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like I
superfamily: Periplasmic binding protein-like I
family: L-arabinose binding protein-like
domain: Quorum-sensing signal (autoinducer-2) binding protein LuxP
species: Vibrio harveyi [TaxId: 669]

Probab=86.55  E-value=6  Score=30.86  Aligned_cols=86  Identities=12%  Similarity=0.146  Sum_probs=60.0

Q ss_pred             CCCeEEEEecCC--CCH--HHHHHHHHHHHHhCCCeEEEE--EccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhh
Q 028883           57 DAPIVGIIMESD--LDL--PVMNDAARTLSDFGVPYEIKI--LPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGV  130 (202)
Q Consensus        57 ~~~~V~IimGS~--SD~--~v~~~a~~~L~~~gi~~ev~V--~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~Lpgv  130 (202)
                      ++..|+|++=+.  |+.  .+.+.+.+.++++|+.|.+..  ...+-.+++-.+.++++..++.+.||.......+.+-+
T Consensus        39 k~~~I~vi~p~~~~~~f~~~~~~~~~~~~~~~g~~~~i~~~~~~s~~d~~~q~~~i~~~i~~~vDgIIi~~~~~~~~~~i  118 (338)
T d1jx6a_          39 RPIKISVVYPGQQVSDYWVRNIASFEKRLYKLNINYQLNQVFTRPNADIKQQSLSLMEALKSKSDYLIFTLDTTRHRKFV  118 (338)
T ss_dssp             SCEEEEEEECCCSSCCHHHHHHHHHHHHHHHTTCCEEEEEEECCTTCCHHHHHHHHHHHHHTTCSEEEECCSSSTTHHHH
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCCCCCHHHHHHHHHHHHhcCCCEEEEecCcccchHHH
Confidence            345799998653  563  345667778999999988754  34666677777788888888899888766556666655


Q ss_pred             hh--hccCCcEEEe
Q 028883          131 AA--ANSQILVIRV  142 (202)
Q Consensus       131 vA--~~T~~PVIgV  142 (202)
                      .-  .....||+-+
T Consensus       119 ~~~~~~~~ipvv~~  132 (338)
T d1jx6a_         119 EHVLDSTNTKLILQ  132 (338)
T ss_dssp             HHHHHHCSCEEEEE
T ss_pred             HHHHHhCCCeEEEE
Confidence            43  3356788754

>d1utaa_ d.58.52.1 (A:) Cell division protein FtsN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Sporulation related repeat
family: Sporulation related repeat
domain: Cell division protein FtsN
species: Escherichia coli [TaxId: 562]

Probab=86.38  E-value=0.38  Score=31.82  Aligned_cols=64  Identities=17%  Similarity=0.039  Sum_probs=51.0

Q ss_pred             eEEEEecCCCCHHHHHHHHHHHHHhCCCeEE-------E-EEccCCCchHHHHHHHHHhhcCc-eEEEEecCC
Q 028883           60 IVGIIMESDLDLPVMNDAARTLSDFGVPYEI-------K-ILPPHQNCKEALSYALSAKERGI-KIIIVGDGV  123 (202)
Q Consensus        60 ~V~IimGS~SD~~v~~~a~~~L~~~gi~~ev-------~-V~SaHRtp~~l~~~~~~~~~~g~-~ViIa~AG~  123 (202)
                      +-.|-.|+-+|..-+++...-|...|++..+       + .++...+-++..+..+...+.|+ .+|+..+|+
T Consensus         5 ~y~vQvGaF~~~~nA~~l~~~L~~~g~~~~i~~~~~~yRV~vGpf~~~~~A~~~~~~L~~~G~~~~i~~~~~g   77 (77)
T d1utaa_           5 RWMVQCGSFRGAEQAETVRAQLAFEGFDSKITTNNGWNRVVIGPVKGKENADSTLNRLKMAGHTNCIRLAAGG   77 (77)
T ss_dssp             BCCCBCCEESCHHHHHHHHHHHHHHTCCEEEEECSSSEEEEESSCBTTTHHHHHHHHHHHHCCSCCBCCCCCC
T ss_pred             eEEEEEEEecCHHHHHHHHHHHHhcCCcceecCCCcEEEEEECCcCCHHHHHHHHHHHHHcCCCCEEEEecCC
Confidence            4557789999999999999999999997432       2 23677888999999999988887 477666664

>d8abpa_ c.93.1.1 (A:) L-arabinose-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like I
superfamily: Periplasmic binding protein-like I
family: L-arabinose binding protein-like
domain: L-arabinose-binding protein
species: Escherichia coli [TaxId: 562]

Probab=85.63  E-value=5.9  Score=29.97  Aligned_cols=80  Identities=16%  Similarity=0.147  Sum_probs=59.7

Q ss_pred             eEEEEecCCCCH---HHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhh--c
Q 028883           60 IVGIIMESDLDL---PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAA--N  134 (202)
Q Consensus        60 ~V~IimGS~SD~---~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~--~  134 (202)
                      +|++++-...|-   ...+.+.+.+++.|+.  +.+.+ +..+++-.+.++++..++++-||...-....++.++..  .
T Consensus         3 kIg~v~~~~~~p~~~~~~~g~~~aa~~~G~~--~i~~~-~~d~~~q~~~i~~li~~~vDgiIi~~~~~~~~~~~~~~a~~   79 (305)
T d8abpa_           3 KLGFLVKQPEEPWFQTEWKFADKAGKDLGFE--VIKIA-VPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARG   79 (305)
T ss_dssp             EEEEEESCTTSHHHHHHHHHHHHHHHHHTEE--EEEEE-CCSHHHHHHHHHHHHHTTCCEEEEECSCGGGHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHHHHHcCCE--EEEEc-CCCHHHHHHHHHHHHHcCCCEEEEccccccccHHHHHHHHh
Confidence            688888877774   3445566777788874  43443 46788888899999999999888877666778887754  4


Q ss_pred             cCCcEEEe
Q 028883          135 SQILVIRV  142 (202)
Q Consensus       135 T~~PVIgV  142 (202)
                      ...|||.+
T Consensus        80 ~giPVV~~   87 (305)
T d8abpa_          80 YDMKVIAV   87 (305)
T ss_dssp             TTCEEEEE
T ss_pred             cCCCEEEE
Confidence            67899997

>d1wika_ c.47.1.1 (A:) Thioredoxin-like protein 2 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein 2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=85.00  E-value=1.3  Score=31.09  Aligned_cols=74  Identities=12%  Similarity=-0.009  Sum_probs=50.4

Q ss_pred             CeEEEEecCCCC---HHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhhcc
Q 028883           59 PIVGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANS  135 (202)
Q Consensus        59 ~~V~IimGS~SD---~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~~T  135 (202)
                      ..|.|.|=++-|   =|++.+|.++|+++|++|+..=..-|  ++ +.+++.+                      ..+..
T Consensus        15 ~~VvvF~Kgt~~~p~Cp~c~~ak~lL~~~~i~~~~~~v~~~--~~-~~~~l~~----------------------~t~~~   69 (109)
T d1wika_          15 ASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILED--EE-VRQGLKT----------------------FSNWP   69 (109)
T ss_dssp             SSEEEEESSTTTCCCSSTHHHHHHHHHHTCSCEEEEESSSC--HH-HHHHHHH----------------------HHSCC
T ss_pred             CCEEEEeCCCCCCCCChHHHHHHHHHHhcCCCceEEEeccc--HH-HHHHHHH----------------------hcCCC
Confidence            458888876633   67789999999999999986544433  22 3333321                      23567


Q ss_pred             CCcEEEecCCCCCCChhh-HHHhhc
Q 028883          136 QILVIRVPLLSEDWSEDD-VINSIR  159 (202)
Q Consensus       136 ~~PVIgVP~~~~~l~G~D-LlS~vq  159 (202)
                      +.|.|=  +.+...+|.| |..+.+
T Consensus        70 TvPqIF--i~g~~IGG~ddl~~l~~   92 (109)
T d1wika_          70 TYPQLY--VRGDLVGGLDIVKELKD   92 (109)
T ss_dssp             SSCEEE--CSSSEEECHHHHHHHHH
T ss_pred             CCCeEE--ECCEEEcCHHHHHHHHH
Confidence            889886  4666678888 777654

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=84.96  E-value=2.4  Score=32.99  Aligned_cols=54  Identities=13%  Similarity=0.181  Sum_probs=31.0

Q ss_pred             CHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhc--CceEEEEecCCc
Q 028883           70 DLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKER--GIKIIIVGDGVE  124 (202)
Q Consensus        70 D~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~--g~~ViIa~AG~a  124 (202)
                      |.+-+++..+.|+++|..+....+-. +.++.+.+++++..++  .++++|-.||..
T Consensus        35 ~~~~l~~~~~~l~~~g~~~~~~~~Dv-s~~~~v~~~~~~~~~~~g~iDilVnnAG~~   90 (257)
T d2rhca1          35 GEEGLRTTLKELREAGVEADGRTCDV-RSVPEIEALVAAVVERYGPVDVLVNNAGRP   90 (257)
T ss_dssp             CHHHHHHHHHHHHHTTCCEEEEECCT-TCHHHHHHHHHHHHHHTCSCSEEEECCCCC
T ss_pred             CHHHHHHHHHHHHhcCCcEEEEEeec-CCHHHHHHHHHHHHHHhCCCCEEEeccccc
Confidence            44555555666666665544333222 4566777776666443  357888877753

>d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Bacterial sepiapterin reductase
species: Chlorobium tepidum [TaxId: 1097]

Probab=84.45  E-value=2.1  Score=33.29  Aligned_cols=53  Identities=9%  Similarity=0.126  Sum_probs=28.0

Q ss_pred             eEEEEecCCCCHHHHHHHHHHHHHhCCC---eEEEEEccCCCchHHHHHHHHHhhcCc
Q 028883           60 IVGIIMESDLDLPVMNDAARTLSDFGVP---YEIKILPPHQNCKEALSYALSAKERGI  114 (202)
Q Consensus        60 ~V~IimGS~SD~~v~~~a~~~L~~~gi~---~ev~V~SaHRtp~~l~~~~~~~~~~g~  114 (202)
                      .|++|||+.|-  +.+.+++.|-+-|..   ++..|+-.-|+.+++++..++.++.|.
T Consensus         2 ~VvlITGas~G--IG~aia~~la~~G~~~~~~~~~v~~~~r~~~~l~~~~~~~~~~g~   57 (240)
T d2bd0a1           2 HILLITGAGKG--IGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEGA   57 (240)
T ss_dssp             EEEEEETTTSH--HHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTTC
T ss_pred             CEEEEccCCCH--HHHHHHHHHHHhCccccccCcEEEEEeCCHHHHHHHHHHHHhcCC
Confidence            57888888873  445555555555543   233334444555555555444444333

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.75  E-value=1.7  Score=34.07  Aligned_cols=51  Identities=14%  Similarity=0.027  Sum_probs=31.4

Q ss_pred             CeEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCce
Q 028883           59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIK  115 (202)
Q Consensus        59 ~~V~IimGS~SD~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~  115 (202)
                      ++|++|||+++.+-  ++.++.|-+-|..    |+-.-|+++++++..++.++.|.+
T Consensus         7 Gkv~lITGas~GIG--~~ia~~la~~G~~----V~l~~r~~~~l~~~~~~~~~~~~~   57 (244)
T d1yb1a_           7 GEIVLITGAGHGIG--RLTAYEFAKLKSK----LVLWDINKHGLEETAAKCKGLGAK   57 (244)
T ss_dssp             TCEEEEETTTSHHH--HHHHHHHHHTTCE----EEEEESCHHHHHHHHHHHHHTTCC
T ss_pred             CCEEEEeCCCcHHH--HHHHHHHHHCCCE----EEEEECCHHHHHHHHHHHHhcCCc
Confidence            68999999999764  5666666666652    222345556665555555444433

>d1uz5a3 c.57.1.2 (A:181-328) MoeA, central domain {Archaeon Pyrococcus horikoshii, PH0582 [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: Molybdenum cofactor biosynthesis proteins
superfamily: Molybdenum cofactor biosynthesis proteins
family: MoeA central domain-like
domain: MoeA, central domain
species: Archaeon Pyrococcus horikoshii, PH0582 [TaxId: 53953]

Probab=82.65  E-value=1.9  Score=31.73  Aligned_cols=101  Identities=10%  Similarity=0.107  Sum_probs=56.0

Q ss_pred             HHHHHHHHHhCCCeE-EEEEccCCCchHHHHHHHHHhhcCceEEEEecCCc----CchhhhhhhccCCcEEEecCCCCCC
Q 028883           75 NDAARTLSDFGVPYE-IKILPPHQNCKEALSYALSAKERGIKIIIVGDGVE----AHLSGVAAANSQILVIRVPLLSEDW  149 (202)
Q Consensus        75 ~~a~~~L~~~gi~~e-v~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~a----a~LpgvvA~~T~~PVIgVP~~~~~l  149 (202)
                      .-....|+++|+... ..++  --.++.+.+.++++.++ +++||+..|.+    ...+.++..+-..=+=++++..+.-
T Consensus        30 ~~l~~~l~~~G~~v~~~~~v--~Dd~~~i~~~i~~~~~~-~DliIttGG~s~g~~D~~~~~l~~~g~~~~~~v~i~PG~p  106 (148)
T d1uz5a3          30 RALCDAINELGGEGIFMGVA--RDDKESLKALIEKAVNV-GDVVVISGGASGGTKDLTASVIEELGEVKVHGIAIQPGKP  106 (148)
T ss_dssp             HHHHHHHHHHTSEEEEEEEE--CSSHHHHHHHHHHHHHH-CSEEEEECCC-----CHHHHHHHHHSEEEEECBSEESCTT
T ss_pred             HHHHHhhhcccccceeeeee--ccHHHHHHHHHHhhhcc-ccEEEECCCcccchhhHHHHHHHHcCchhhhhhHHHhcCc
Confidence            346778899999743 3333  45677888777776554 68888877764    3355666655433344555443211


Q ss_pred             ChhhHHHhhcCCCCCeeeEEecCChhhHHHHHHHHHc
Q 028883          150 SEDDVINSIRMPSHVQVASVPRNNAKNAALYAVKVLG  186 (202)
Q Consensus       150 ~G~DLlS~vqMP~GvpVatV~I~n~~NAAl~Aa~IL~  186 (202)
                      .   +++.+   .|.||  +++-+.-.|++.+...+-
T Consensus       107 ~---~~g~~---~~~~v--~~LPG~P~s~~~~~~~~v  135 (148)
T d1uz5a3         107 T---IIGVI---KGKPV--FGLPGYPTSCLTNFTLLV  135 (148)
T ss_dssp             C---EEEEE---TTEEE--EEECSSHHHHHHHHHHHH
T ss_pred             e---eeeee---CCEEE--EECCCCHHHHHHHHHHHH
Confidence            0   12222   24443  444555566666665543

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=82.49  E-value=2.4  Score=33.14  Aligned_cols=52  Identities=17%  Similarity=0.186  Sum_probs=30.5

Q ss_pred             CeEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceE
Q 028883           59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKI  116 (202)
Q Consensus        59 ~~V~IimGS~SD~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~V  116 (202)
                      .+|++|+|+.+-+  ...+++.|-+-|.  .|-+  .+|+.+++++..++.++.|.++
T Consensus         5 gK~alITGas~GI--G~aia~~la~~Ga--~V~~--~~r~~~~l~~~~~~~~~~g~~~   56 (260)
T d1zema1           5 GKVCLVTGAGGNI--GLATALRLAEEGT--AIAL--LDMNREALEKAEASVREKGVEA   56 (260)
T ss_dssp             TCEEEEETTTSHH--HHHHHHHHHHTTC--EEEE--EESCHHHHHHHHHHHHTTTSCE
T ss_pred             CCEEEEeCCCCHH--HHHHHHHHHHCCC--EEEE--EECCHHHHHHHHHHHHhcCCcE
Confidence            5788888888743  4556666666664  2222  3356666665555554444433

>d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sepiapterin reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=81.20  E-value=2.9  Score=32.29  Aligned_cols=50  Identities=8%  Similarity=-0.037  Sum_probs=34.2

Q ss_pred             CeEEEEecCCCCHHHHHHHHHHHHHhCCC-eEEEEEccCCCchHHHHHHHHHhhc
Q 028883           59 PIVGIIMESDLDLPVMNDAARTLSDFGVP-YEIKILPPHQNCKEALSYALSAKER  112 (202)
Q Consensus        59 ~~V~IimGS~SD~~v~~~a~~~L~~~gi~-~ev~V~SaHRtp~~l~~~~~~~~~~  112 (202)
                      ++|+||+|+++  -+.+.+++.|.+++-. +.|-+++  |+.+++++..++..++
T Consensus         6 gKvalITGas~--GIG~aiA~~lA~~~~~G~~Vv~~~--r~~~~l~~~~~~l~~~   56 (259)
T d1oaaa_           6 CAVCVLTGASR--GFGRALAPQLARLLSPGSVMLVSA--RSESMLRQLKEELGAQ   56 (259)
T ss_dssp             SEEEEESSCSS--HHHHHHHHHHHTTBCTTCEEEEEE--SCHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCC--HHHHHHHHHHHhcccCCCEEEEEE--CCHHHHHHHHHHHHhh
Confidence            68999999998  4566777777664322 4555544  7777777777766543

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=80.85  E-value=3.3  Score=32.34  Aligned_cols=52  Identities=13%  Similarity=0.203  Sum_probs=33.2

Q ss_pred             CeEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceE
Q 028883           59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKI  116 (202)
Q Consensus        59 ~~V~IimGS~SD~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~V  116 (202)
                      ++|+||+|+.+-  +...+++.|-+-|.  .|-++  .|..+++++..++.++.+.++
T Consensus         8 GK~alITGas~G--IG~aia~~la~~Ga--~V~~~--~r~~~~l~~~~~~~~~~g~~~   59 (259)
T d2ae2a_           8 GCTALVTGGSRG--IGYGIVEELASLGA--SVYTC--SRNQKELNDCLTQWRSKGFKV   59 (259)
T ss_dssp             TCEEEEESCSSH--HHHHHHHHHHHTTC--EEEEE--ESCHHHHHHHHHHHHHTTCEE
T ss_pred             CCEEEEeCCCCH--HHHHHHHHHHHCCC--EEEEE--ECCHHHHHHHHHHHHhcCCCc
Confidence            689999999984  45567777777675  33333  466666666666655554443

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=80.64  E-value=2  Score=33.76  Aligned_cols=65  Identities=14%  Similarity=0.056  Sum_probs=33.2

Q ss_pred             CeEEEEecCCC----------------------CHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhc--Cc
Q 028883           59 PIVGIIMESDL----------------------DLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKER--GI  114 (202)
Q Consensus        59 ~~V~IimGS~S----------------------D~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~--g~  114 (202)
                      ++|+||+|+.+                      +.+.++++.+.|++.|..+.... .=-+.++.+.+++++..++  ++
T Consensus        11 gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~l~~~g~~~~~~~-~Dvs~~~~~~~~~~~~~~~~g~i   89 (255)
T d1fmca_          11 GKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQAFACR-CDITSEQELSALADFAISKLGKV   89 (255)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEE-CCTTCHHHHHHHHHHHHHHHSSC
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEE-ccCCCHHHHHHHHHHHHHHcCCC
Confidence            56777777776                      33334444444444444332211 1223455555555554332  35


Q ss_pred             eEEEEecCCc
Q 028883          115 KIIIVGDGVE  124 (202)
Q Consensus       115 ~ViIa~AG~a  124 (202)
                      +++|..||..
T Consensus        90 DilvnnAG~~   99 (255)
T d1fmca_          90 DILVNNAGGG   99 (255)
T ss_dssp             CEEEECCCCC
T ss_pred             CEeeeCCcCC
Confidence            6777776653

>d1ktea_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=80.40  E-value=1.9  Score=29.74  Aligned_cols=75  Identities=11%  Similarity=0.078  Sum_probs=51.3

Q ss_pred             CeEEEEecCCCCHHHHHHHHHHHHHhCCC---eEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhhcc
Q 028883           59 PIVGIIMESDLDLPVMNDAARTLSDFGVP---YEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANS  135 (202)
Q Consensus        59 ~~V~IimGS~SD~~v~~~a~~~L~~~gi~---~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~~T  135 (202)
                      .+|.|.+-  +.=|++.+|.+.|+++|++   +++.=.-.+..++.+.+++++.                      .+..
T Consensus        12 ~~Vviysk--~~Cp~C~~ak~ll~~~~~~~~~~~~~e~d~~~d~~~~~~~l~~~----------------------~g~~   67 (105)
T d1ktea_          12 GKVVVFIK--PTCPFCRKTQELLSQLPFKEGLLEFVDITATSDTNEIQDYLQQL----------------------TGAR   67 (105)
T ss_dssp             TCEEEEEC--SSCHHHHHHHHHHHHSCBCTTSEEEEEGGGSTTHHHHHHHHHHH----------------------HSCC
T ss_pred             CCEEEEEC--CCCchHHHHHHHHHHhCCccceeeeeecccccccHHHHHHHhhc----------------------cCCC
Confidence            35666664  4559999999999999998   4444444566666776665532                      2446


Q ss_pred             CCcEEEecCCCCCCChhh-HHHhhc
Q 028883          136 QILVIRVPLLSEDWSEDD-VINSIR  159 (202)
Q Consensus       136 ~~PVIgVP~~~~~l~G~D-LlS~vq  159 (202)
                      +.|.|=+  .+...+|.| |..+.+
T Consensus        68 tvPqIfi--~g~~IGG~~el~~l~~   90 (105)
T d1ktea_          68 TVPRVFI--GKECIGGCTDLESMHK   90 (105)
T ss_dssp             CSCEEEE--TTEEEESHHHHHHHHH
T ss_pred             cCcEEEE--CCEEEecHHHHHHHHH
Confidence            7888754  555678888 877654

>d1abaa_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Bacteriophage T4 [TaxId: 10665]

Probab=80.32  E-value=2.4  Score=28.32  Aligned_cols=71  Identities=11%  Similarity=0.061  Sum_probs=46.6

Q ss_pred             CCHHHHHHHHHHHHHhCCCeEEEEEccCC---CchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhhccCCcEEEecCC
Q 028883           69 LDLPVMNDAARTLSDFGVPYEIKILPPHQ---NCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQILVIRVPLL  145 (202)
Q Consensus        69 SD~~v~~~a~~~L~~~gi~~ev~V~SaHR---tp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~~T~~PVIgVP~~  145 (202)
                      ..=|.+.+|...|++.|++|+..-..-+.   .+....++.+.+..                  ...+.++.|.|=+- .
T Consensus        12 ~~C~~C~~AK~lL~~~~i~y~~~~i~~~~~~~~~~~~~e~~~~~~~------------------~~~~~~TvPqIfi~-d   72 (87)
T d1abaa_          12 HKCGPCDNAKRLLTVKKQPFEFINIMPEKGVFDDEKIAELLTKLGR------------------DTQIGLTMPQVFAP-D   72 (87)
T ss_dssp             SCCHHHHHHHHHHHHTTCCEEEEESCSBTTBCCHHHHHHHHHHHTC------------------SCCTTCCSCEEECT-T
T ss_pred             CCChhHHHHHHHHHHcCCCceeccccccccccCHHHHHHHHHHhcc------------------cCCCCceeCeEEec-C
Confidence            35689999999999999999876655443   34444455443322                  12356788988532 2


Q ss_pred             CCCCChhh-HHHhh
Q 028883          146 SEDWSEDD-VINSI  158 (202)
Q Consensus       146 ~~~l~G~D-LlS~v  158 (202)
                      +...+|.| |...+
T Consensus        73 g~~IGG~del~e~~   86 (87)
T d1abaa_          73 GSHIGGFDQLREYF   86 (87)
T ss_dssp             SCEEESHHHHHHHT
T ss_pred             CcEEECHHHHHHHh
Confidence            44578888 87654

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=80.03  E-value=3  Score=32.47  Aligned_cols=51  Identities=14%  Similarity=0.104  Sum_probs=28.9

Q ss_pred             CeEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCce
Q 028883           59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIK  115 (202)
Q Consensus        59 ~~V~IimGS~SD~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~  115 (202)
                      .||++|+|+++-  +...+++.|-+-|.  .|-++  .|+.+++++..++.++.|.+
T Consensus        10 nKvalITGas~G--IG~a~a~~la~~Ga--~V~~~--~r~~~~l~~~~~~l~~~g~~   60 (251)
T d2c07a1          10 NKVALVTGAGRG--IGREIAKMLAKSVS--HVICI--SRTQKSCDSVVDEIKSFGYE   60 (251)
T ss_dssp             SCEEEEESTTSH--HHHHHHHHHTTTSS--EEEEE--ESSHHHHHHHHHHHHTTTCC
T ss_pred             CCEEEEeCCCCH--HHHHHHHHHHHcCC--EEEEE--ECCHHHHHHHHHHHHhcCCc
Confidence            578888888873  45555566655554  23222  35555555555555444333