Citrus Sinensis ID: 028968

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-
Protein Sequence
MGSQVLPQALHWIPRSSTQCIPSKRLGFSTVLSRGPFVSHGVSVSAKPIGWNLGFFVNAQVKDSFVVRAEANEEAEANESIEEEQNEAVQAQGDVVVAVEAESEDKVEEEEVKAPRKPRVKLGDIMGILNKRAVEASESERPIPDIRTGDVVEIKLEVPENRRRLSIYKGIVMSRQNAGIHTTIRIRRIIAGIGVEIVFPL
Secondary Structure (PSIPRED)
ccccccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccHHHcccccHHHHHHHHHHccccccccccccccccccHHcccccccccccHHHHHHHHHHHHHHHHHccccccccccccEEEEEEEEEcccEEcccEEEEEEEEccccccccEEEEEEEccEEEEEEccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHEEEccccccccccccccEEEEccccccccccccccEcccccccccccccccccccEEEEEccccccccHHccccccccccccccccccccccccHccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccEEEEEEEEEcccEEEEEEEEEEEEEcccccccEEEEEEEEccccEEEEccc
Coil and Loop (DISEMBL)
mgsqvlpqalhwiprsstqcipskrlgfstvlsrgpfvshgvsvsakpigwnlgffvnaQVKDSFVVRAEANEEAEANESIEEEQNEAVQAQGDVVVAVEAesedkveeeevkaprkprvklgDIMGILNKRAveaseserpipdirtgdvveiklevpenrrrLSIYKGIVMsrqnagihtTIRIRRIIAGIGVEIVFPL
Flexible Loop (DISEMBL)
MGSQVLPQAlhwiprsstqcipSKRLGFSTVLSRGPFVSHGVSVSAKPIGWNLGFFVNAQVKDSFVVRAEANEEAEANESIEEEQNEAVQAQGDVVVAVEAesedkveeeevkaprkprvklgdimGILNKraveaseserpipdirtgdvveiklevpenrrrlsiykgivmsrqnagihttiRIRRIIAGIGVEIVFPL
Low Complexity Region (SEG)
MGSQVLPQALHWIPRSSTQCIPSKRLGFSTVLSRGPFVSHGVSVSAKPIGWNLGFFVNAQVKDSFVVRaeaneeaeanesieeeqneavqaqgdvvvaveaesedkveeeevkAPRKPRVKLGDIMGILNKRAVEASESERPIPDIRTGDVVEIKLEVPENRRRLSIYKGIVMSRQNagihttirirriiagigVEIVFPL
Disordered region (IsUnstruct)
********ALHWIPRSSTQCIPSKRLGFSTVLSRGPFVSHGVSVSAKPIGWNLGFFVNAQVKDSFVVR********************************************************IMGIL****************IRTGDVVEIKLEVPENRRRLSIYKGIVMSRQNAGIHTTIRIRRIIAGIGVEIVF**
Disordered Region (DISOPRED)
****VLPQALHWIP**************************************LG*********************************************************************DIMGILNKRAVEASESERPIPDIRTGDVVEIKLEVPENRRRLSIYKGIVMSRQNAGIHTTIRIRRIIAGIGVEIVFPL
Disordered Region (DISEMBL)
MGSQVLPQALHWIPRSSTQCIPSKRLGFSTVLSRGPFVSHGVSVSAKPIGWNLGFFVNAQVKDSFVVRAEA*******************AQGDVVVAVE****************KPRVKLGDIMGILNKRAVEASESERPIPDIRTGDVVEIKLEVPENRRRLSIYKGIVMSRQNAGIHTTIRIRRIIAGIGVEIVFPL
Disordered Region (DISPRO)
**SQVLPQALHWIPRSSTQCIPSKRLGFSTVLSR*********V*********G********DS*************************************************APRKPRVKLGDIMGILNKRAVEASESERPIPDIRTGDVVEIKLEVPENRRRLSIYKGIVMSRQNAGIHTTIRIRRIIAGIGVEIVFPL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGSQVLPQALHWIPRSSTQCIPSKRLGFSTVLSRGPFVSHGVSVSAKPIGWNLGFFVNAQVKDSFVxxxxxxxxxxxxxxxxxxxxxxxxxxxxVVVAVEAESEDKVEEEEVKAPRKPRVKLGDIMGILNKRAVEASESERPIPDIRTGDVVEIKLEVPENRRRLSIYKGIVMSRQNAGIHTTIRIRRIIAGIGVEIVFPL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	201	2.2.26 [Sep-21-2011]
Q8W463	225	50S ribosomal protein L19	yes	no	0.910	0.813	0.577	2e-49
Q8RXX5	229	50S ribosomal protein L19	no	no	0.935	0.820	0.556	6e-45
P82413	233	50S ribosomal protein L19	N/A	no	0.940	0.811	0.519	1e-43
Q4JV09	113	50S ribosomal protein L19	yes	no	0.368	0.654	0.415	3e-09
Q7V668	158	50S ribosomal protein L19	yes	no	0.333	0.424	0.441	5e-09
P56356	130	50S ribosomal protein L19	N/A	no	0.348	0.538	0.380	9e-09
Q3ALW5	132	50S ribosomal protein L19	no	no	0.348	0.530	0.408	2e-08
B2GFY5	120	50S ribosomal protein L19	yes	no	0.368	0.616	0.363	2e-08
Q46GU7	162	50S ribosomal protein L19	yes	no	0.502	0.623	0.345	2e-08
Q7V2K1	160	50S ribosomal protein L19	yes	no	0.348	0.437	0.380	2e-08

>sp|Q8W463|RK191_ARATH 50S ribosomal protein L19-1, chloroplastic OS=Arabidopsis thaliana GN=At4g17560 PE=2 SV=1

 Score =  194 bits (494), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 119/206 (57%), Positives = 144/206 (69%), Gaps = 23/206 (11%)

Query: 1   MGSQVLPQALHWIPRSSTQCIPSKRLGFSTVLSRGPFVSHGVSVSAKPI---GWNLGFFV 57
           M    LPQALH IPR+ TQ   SK LGFS+ LS  P +   +SVS   +   G   GF +
Sbjct: 3   MSFHRLPQALHMIPRNPTQS--SKNLGFSSFLSCAPSMDSRISVSRLSLNHPGSKFGFSL 60

Query: 58  NAQVKDSFVVRAE-ANEEAEANESIEEEQNEAVQAQGDVVVAVEAESEDKVEEE-EVKAP 115
           + +V++ F+VRAE  N EAE+ E                 VA  A++E  VEE  E K  
Sbjct: 61  DTRVRNEFIVRAEEGNTEAESEE----------------FVAEIADTEGNVEEVVEAKPT 104

Query: 116 RKPRVKLGDIMGILNKRAVEASESERPIPDIRTGDVVEIKLEVPENRRRLSIYKGIVMSR 175
           RKPR+KLGD+MGILN++A+E +E  RP+P+IRTGD+VEIKLEVPEN+RRLSIYKGIVMSR
Sbjct: 105 RKPRIKLGDVMGILNQKAIEVAEKVRPVPEIRTGDIVEIKLEVPENKRRLSIYKGIVMSR 164

Query: 176 QNAGIHTTIRIRRIIAGIGVEIVFPL 201
           QNAGIHTTIRIRRIIAGIGVEIVFP+
Sbjct: 165 QNAGIHTTIRIRRIIAGIGVEIVFPI 190

Located at the 30S-50S ribosomal subunit interface and binds directly to 23S ribosomal RNA.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8RXX5|RK192_ARATH 50S ribosomal protein L19-2, chloroplastic OS=Arabidopsis thaliana GN=At5g47190 PE=2 SV=1

 Score =  180 bits (456), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 113/203 (55%), Positives = 138/203 (67%), Gaps = 15/203 (7%)

Query: 2   GSQVLPQALHWIPRSSTQCIPSKRLGFSTVLSRGPFVSHGVSVSAKPIGW---NLGFFVN 58
            S +LPQALH IPR  T    SK LG S++L R   V+  +SVS   +     N GF ++
Sbjct: 4   SSHLLPQALHMIPR--TPSFSSKNLGVSSILPRASSVNSRLSVSRVFLNHSSSNFGFAID 61

Query: 59  AQVKDSFVVRAEANEEAEANESIEEEQNEAVQAQGDVVVAVEAESEDKVEEEEVKAPRKP 118
           ++ +  F+ +AE + E E          EAV  +  V    E E E  V  EE K P K 
Sbjct: 62  SKKRKEFIAKAEESTEGE---------TEAV-VENAVETEAEGEGEATVAAEEAKPPWKT 111

Query: 119 RVKLGDIMGILNKRAVEASESERPIPDIRTGDVVEIKLEVPENRRRLSIYKGIVMSRQNA 178
           RVKLGDIMG+LNK+A+E +E+ RP+P +RTGD+VEIKLEVPEN+RRLSIYKGIVMSRQNA
Sbjct: 112 RVKLGDIMGLLNKKAIEVAETVRPVPGLRTGDIVEIKLEVPENKRRLSIYKGIVMSRQNA 171

Query: 179 GIHTTIRIRRIIAGIGVEIVFPL 201
           GIHTTIRIRRIIAGIGVEIVFP+
Sbjct: 172 GIHTTIRIRRIIAGIGVEIVFPI 194

Located at the 30S-50S ribosomal subunit interface and binds directly to 23S ribosomal RNA.

Arabidopsis thaliana (taxid: 3702)

>sp|P82413|RK19_SPIOL 50S ribosomal protein L19, chloroplastic OS=Spinacia oleracea GN=RPL19 PE=1 SV=2

 Score =  176 bits (445), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 109/210 (51%), Positives = 141/210 (67%), Gaps = 21/210 (10%)

Query: 1   MGSQVLPQALHWIPRS-STQCIP-SKRLGFSTVLSRGPFVSHGVS-------VSAKPIGW 51
           M S+VLPQAL  IP + S QC P  K+LGF    +R   +S            S+     
Sbjct: 1   MASKVLPQALLVIPSNHSLQCPPLKKQLGFPIDSNRRFSLSSNCRSNLMVSRASSNLFSS 60

Query: 52  NLGFFVNAQVKDSFVVRAEANEEAEANESIEEEQNEAVQAQGDVVVAVEAESEDKVEEEE 111
           N     +   ++SFVVR+EA + ++A       ++ AV A+ ++ V  EAE+E++     
Sbjct: 61  NFSSIFSFPARNSFVVRSEAEDSSDA-----PAESVAVVAEEELPVESEAEAEER----- 110

Query: 112 VKAPRKPRVKLGDIMGILNKRAVEASESERPIPDIRTGDVVEIKLEVPENRRRLSIYKGI 171
              PR+ RVKLGDIMGILNK+AV A+E  RP+P IRTGD+V+I+LEVPEN+RRLS+YKGI
Sbjct: 111 --PPRQQRVKLGDIMGILNKKAVHAAEELRPVPGIRTGDIVQIRLEVPENKRRLSVYKGI 168

Query: 172 VMSRQNAGIHTTIRIRRIIAGIGVEIVFPL 201
           V+SRQNAGIHTTIRIRRIIAG+GVEIVFPL
Sbjct: 169 VISRQNAGIHTTIRIRRIIAGVGVEIVFPL 198

Located at the 30S-50S ribosomal subunit interface and binds directly to 23S ribosomal RNA.

Spinacia oleracea (taxid: 3562)

>sp|Q4JV09|RL19_CORJK 50S ribosomal protein L19 OS=Corynebacterium jeikeium (strain K411) GN=rplS PE=3 SV=1

 Score = 62.0 bits (149), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 32/77 (41%), Positives = 53/77 (68%), Gaps = 3/77 (3%)

Query: 126 MGILNKRAVEASESERPIPDIRTGDVVEIKLEVPE-NRRRLSIYKGIVMSRQNAGIHTTI 184
           M IL+K  V+A++    IP+ R GD +++ ++V E ++ RL +++G+V+ RQN+GI  T 
Sbjct: 1   MHILDK--VDAAQLRDDIPEFRAGDTLDVHVKVIEGSKSRLQVFRGVVIRRQNSGIRETF 58

Query: 185 RIRRIIAGIGVEIVFPL 201
            IR++  GIGVE  FP+
Sbjct: 59  TIRKVSFGIGVERTFPV 75

This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.

Corynebacterium jeikeium (strain K411) (taxid: 306537)

>sp|Q7V668|RL19_PROMM 50S ribosomal protein L19 OS=Prochlorococcus marinus (strain MIT 9313) GN=rplS PE=3 SV=1

 Score = 60.8 bits (146), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 30/68 (44%), Positives = 46/68 (67%), Gaps = 1/68 (1%)

Query: 135 EASESERPIPDIRTGDVVEIKLEVPE-NRRRLSIYKGIVMSRQNAGIHTTIRIRRIIAGI 193
           EAS+ +  + DI  GD V + + + E N+ R+  Y+G+V+++++ GIH TI +RRI  GI
Sbjct: 51  EASQQKSDLNDIYVGDTVRVGVRISEGNKERIQPYEGVVIAKRHGGIHETITVRRIFQGI 110

Query: 194 GVEIVFPL 201
           GVE VF L
Sbjct: 111 GVERVFML 118

This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.

Prochlorococcus marinus (strain MIT 9313) (taxid: 74547)

>sp|P56356|RK19_CHLVU 50S ribosomal protein L19, chloroplastic OS=Chlorella vulgaris GN=rpl19 PE=3 SV=1

 Score = 60.1 bits (144), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 50/71 (70%), Gaps = 1/71 (1%)

Query: 132 RAVEASESERPIPDIRTGDVVEIKLEVPE-NRRRLSIYKGIVMSRQNAGIHTTIRIRRII 190
           +A+++   +  +PD+R GD+V I + + E N++R+  ++G V+S+  AG ++T+ +R+ +
Sbjct: 9   QAIQSGTIKTELPDVRVGDLVRIGVSIQEGNKQRIQPFEGTVISKHQAGANSTVTVRKSL 68

Query: 191 AGIGVEIVFPL 201
            GIGVE VFPL
Sbjct: 69  QGIGVERVFPL 79

Chlorella vulgaris (taxid: 3077)

>sp|Q3ALW5|RL19_SYNSC 50S ribosomal protein L19 OS=Synechococcus sp. (strain CC9605) GN=rplS PE=3 SV=2

 Score = 59.3 bits (142), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 49/71 (69%), Gaps = 1/71 (1%)

Query: 132 RAVEASESERPIPDIRTGDVVEIKLEVPE-NRRRLSIYKGIVMSRQNAGIHTTIRIRRII 190
           R+ E+S+ +  +P+I  GD V + + + E N+ R+  Y+G+V+S+++ G++ TI +RRI 
Sbjct: 22  RSFESSQQKDDLPEIYVGDTVRVGVRISEGNKERVQPYEGVVISKRHGGLNQTITVRRIF 81

Query: 191 AGIGVEIVFPL 201
            GIGVE VF L
Sbjct: 82  QGIGVERVFML 92

This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.

Synechococcus sp. (strain CC9605) (taxid: 110662)

>sp|B2GFY5|RL19_KOCRD 50S ribosomal protein L19 OS=Kocuria rhizophila (strain ATCC 9341 / DSM 348 / NBRC 103217 / DC2201) GN=rplS PE=3 SV=1

 Score = 59.3 bits (142), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 47/77 (61%), Gaps = 3/77 (3%)

Query: 126 MGILNKRAVEASESERPIPDIRTGDVVEIKLEVPE-NRRRLSIYKGIVMSRQNAGIHTTI 184
           M IL++  ++A      +PD R GD + + + + E NR R+ ++KG VM RQ +G+  T 
Sbjct: 1   MNILDQ--LDAKSLRDDVPDFRPGDTLNVHVNIVEGNRSRVQVFKGFVMGRQGSGVRETF 58

Query: 185 RIRRIIAGIGVEIVFPL 201
            +R++  G+GVE  FP+
Sbjct: 59  TVRKVSFGVGVERTFPV 75

This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.

Kocuria rhizophila (strain ATCC 9341 / DSM 348 / NBRC 103217 / DC2201) (taxid: 378753)

>sp|Q46GU7|RL19_PROMT 50S ribosomal protein L19 OS=Prochlorococcus marinus (strain NATL2A) GN=rplS PE=3 SV=1

 Score = 58.9 bits (141), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/110 (34%), Positives = 64/110 (58%), Gaps = 9/110 (8%)

Query: 97  VAVEAESEDKVEEEEVKAPRKPRVKLGDIMGILNK------RAVEASESERPIPDIRTGD 150
           V +E ES +  E+ EVK   + + K G  + I N       +  E ++  + +PD+  GD
Sbjct: 13  VKIEDES-NASEDSEVKTASETKSK-GKKISIQNLSPAEIIKTFEDAQLGKDLPDVYVGD 70

Query: 151 VVEIKLEVPE-NRRRLSIYKGIVMSRQNAGIHTTIRIRRIIAGIGVEIVF 199
            V + + + E N+ R+  Y+G+V+++++ GIH TI +RRI  GIGVE +F
Sbjct: 71  TVRVGVRISEGNKERVQPYEGVVIAKRHGGIHQTITVRRIFQGIGVERIF 120

This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.

Prochlorococcus marinus (strain NATL2A) (taxid: 59920)

>sp|Q7V2K1|RL19_PROMP 50S ribosomal protein L19 OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=rplS PE=3 SV=1

 Score = 58.9 bits (141), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 49/71 (69%), Gaps = 1/71 (1%)

Query: 132 RAVEASESERPIPDIRTGDVVEIKLEVPE-NRRRLSIYKGIVMSRQNAGIHTTIRIRRII 190
           +  E  + ++ +P+I  GD V++ +++ E N+ R+  Y+G+V+++++ G+H TI +RRI 
Sbjct: 50  KEFEREQLKKQLPEIYVGDTVKVGVKITEGNKERVQPYEGVVIAKRHGGLHQTITVRRIF 109

Query: 191 AGIGVEIVFPL 201
            GIGVE VF L
Sbjct: 110 QGIGVERVFML 120

This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.

Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) (taxid: 59919)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	201
359497145	231	PREDICTED: 50S ribosomal protein L19, ch	0.915	0.796	0.553	4e-49
89257581	224	plastid ribosomal protein L19, putative	0.905	0.812	0.584	2e-48
18414915	225	50S ribosomal protein L19-1 [Arabidopsis	0.910	0.813	0.577	1e-47
255581980	207	50S ribosomal protein L19, putative [Ric	0.945	0.917	0.580	2e-47
449458994	221	PREDICTED: 50S ribosomal protein L19, ch	0.925	0.841	0.572	3e-46
147854523	231	hypothetical protein VITISV_037813 [Viti	0.915	0.796	0.549	5e-46
255629017	212	unknown [Glycine max]	0.870	0.825	0.536	4e-45
351720814	213	uncharacterized protein LOC100500328 [Gl	0.875	0.826	0.541	6e-45
388517759	226	unknown [Lotus japonicus]	0.940	0.836	0.566	2e-44
351722420	213	uncharacterized protein LOC100305649 [Gl	0.875	0.826	0.532	2e-43

>gi|359497145|ref|XP_002264869.2| PREDICTED: 50S ribosomal protein L19, chloroplastic [Vitis vinifera] gi|296088907|emb|CBI38456.3| unnamed protein product [Vitis vinifera]

 Score =  199 bits (507), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 118/213 (55%), Positives = 141/213 (66%), Gaps = 29/213 (13%)

Query: 1   MGSQVLPQALHWIPRSSTQCIPSKRLGFSTV------------LSRGPFVSHGVSVSAKP 48
           M S+VLPQAL   PRSS Q  P K+LG ST             LS   F S+  +   +P
Sbjct: 1   MASKVLPQALFITPRSSNQW-PPKKLGLSTFPSPRSSSLNLNRLSTSRFSSNSFAFHFRP 59

Query: 49  IGWNLGFFVNAQVKDSFVVRAEANEEAEANESIEEEQNEAVQAQGDVVVAVEAESEDKVE 108
           I  +   F        F+VRAEA+ E E      +E  E  +   +    V+ ++ED   
Sbjct: 60  IVVSPKRF--------FIVRAEADNEGELGA---DENTEEEETVSETESEVKLDAED--- 105

Query: 109 EEEVKAPRKPRVKLGDIMGILNKRAVEASESERPIPDIRTGDVVEIKLEVPENRRRLSIY 168
             E K PRKPRVKLGDIMGILNKRA+EASE ERP+PD+RTGD+VEIKLEVPENRRRLSIY
Sbjct: 106 --EAKPPRKPRVKLGDIMGILNKRAIEASEKERPVPDLRTGDIVEIKLEVPENRRRLSIY 163

Query: 169 KGIVMSRQNAGIHTTIRIRRIIAGIGVEIVFPL 201
           KGIV+S+QNAGIHTTIR+RRIIAG+GVEIVFP+
Sbjct: 164 KGIVISKQNAGIHTTIRVRRIIAGVGVEIVFPV 196

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|89257581|gb|ABD65070.1| plastid ribosomal protein L19, putative [Brassica oleracea]

 Score =  197 bits (502), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 118/202 (58%), Positives = 144/202 (71%), Gaps = 20/202 (9%)

Query: 3   SQVLPQALHWIPRSSTQCIPSKRLGFSTVLSRGPFVSHGVSVSAKPIGWNL---GFFVNA 59
           S + PQALH IPR+ TQ  PSK+LGFS+  S  P ++  ++VS   +  ++   GF ++A
Sbjct: 5   SHLFPQALHMIPRNPTQ--PSKKLGFSSFQSCAPSMNPRLTVSRVSLNHSVSKSGFSLDA 62

Query: 60  QVKDSFVVRAEANEEAEANESIEEEQNEAVQAQGDVVVAVEAESEDKVEEEEVKAPRKPR 119
           + +   +VRAE            E + EAV A  D     E   ED VE  EVKAP+K R
Sbjct: 63  KARREVLVRAEG-----------EGEGEAVDANADT----EGNVEDVVEAGEVKAPKKTR 107

Query: 120 VKLGDIMGILNKRAVEASESERPIPDIRTGDVVEIKLEVPENRRRLSIYKGIVMSRQNAG 179
           VKLGD+MGILN++A+E SE  RP+P+IRTGD+VEIKLEVPENRRRLSIYKGIVMSRQNAG
Sbjct: 108 VKLGDVMGILNQKAIEVSEKLRPVPEIRTGDIVEIKLEVPENRRRLSIYKGIVMSRQNAG 167

Query: 180 IHTTIRIRRIIAGIGVEIVFPL 201
           IHTTIRIRRIIAGIGVEIVFP+
Sbjct: 168 IHTTIRIRRIIAGIGVEIVFPI 189

Source: Brassica oleracea

Species: Brassica oleracea

Genus: Brassica

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18414915|ref|NP_567531.1| 50S ribosomal protein L19-1 [Arabidopsis thaliana] gi|75248729|sp|Q8W463.1|RK191_ARATH RecName: Full=50S ribosomal protein L19-1, chloroplastic; Flags: Precursor gi|17065490|gb|AAL32899.1| Unknown protein [Arabidopsis thaliana] gi|20148593|gb|AAM10187.1| unknown protein [Arabidopsis thaliana] gi|21554252|gb|AAM63327.1| contains similarity to plastid ribosomal protein L19 [Arabidopsis thaliana] gi|332658510|gb|AEE83910.1| 50S ribosomal protein L19-1 [Arabidopsis thaliana]

 Score =  194 bits (494), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 119/206 (57%), Positives = 144/206 (69%), Gaps = 23/206 (11%)

Query: 1   MGSQVLPQALHWIPRSSTQCIPSKRLGFSTVLSRGPFVSHGVSVSAKPI---GWNLGFFV 57
           M    LPQALH IPR+ TQ   SK LGFS+ LS  P +   +SVS   +   G   GF +
Sbjct: 3   MSFHRLPQALHMIPRNPTQS--SKNLGFSSFLSCAPSMDSRISVSRLSLNHPGSKFGFSL 60

Query: 58  NAQVKDSFVVRAE-ANEEAEANESIEEEQNEAVQAQGDVVVAVEAESEDKVEEE-EVKAP 115
           + +V++ F+VRAE  N EAE+ E                 VA  A++E  VEE  E K  
Sbjct: 61  DTRVRNEFIVRAEEGNTEAESEE----------------FVAEIADTEGNVEEVVEAKPT 104

Query: 116 RKPRVKLGDIMGILNKRAVEASESERPIPDIRTGDVVEIKLEVPENRRRLSIYKGIVMSR 175
           RKPR+KLGD+MGILN++A+E +E  RP+P+IRTGD+VEIKLEVPEN+RRLSIYKGIVMSR
Sbjct: 105 RKPRIKLGDVMGILNQKAIEVAEKVRPVPEIRTGDIVEIKLEVPENKRRLSIYKGIVMSR 164

Query: 176 QNAGIHTTIRIRRIIAGIGVEIVFPL 201
           QNAGIHTTIRIRRIIAGIGVEIVFP+
Sbjct: 165 QNAGIHTTIRIRRIIAGIGVEIVFPI 190

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255581980|ref|XP_002531788.1| 50S ribosomal protein L19, putative [Ricinus communis] gi|223528581|gb|EEF30602.1| 50S ribosomal protein L19, putative [Ricinus communis]

 Score =  194 bits (492), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 119/205 (58%), Positives = 145/205 (70%), Gaps = 15/205 (7%)

Query: 1   MGSQVLPQALHWIPRSSTQCIPSKRLGFSTVLSRG-PFVSHG---VSVSAKPIGWNLGFF 56
           M S++LPQAL  IP + TQC P ++LGFS  + R    +S+    VS+S+   G NL   
Sbjct: 1   MASKILPQALVLIPINPTQCPPPRKLGFSAAVHRSCSSLSNSTCRVSLSSNSFGSNLDSI 60

Query: 57  VNAQVKDSFVVRAEANEEAEANESIEEEQNEAVQAQGDVVVAVEAESEDKVEEEEVKAPR 116
           ++A  K  F+ RAE+ E A A  + EE +   V+ Q           E+   EE    PR
Sbjct: 61  ISAFAKQRFIARAESEESAAAEVAEEESEVLEVEGQ-----------EEAKAEEIEIEPR 109

Query: 117 KPRVKLGDIMGILNKRAVEASESERPIPDIRTGDVVEIKLEVPENRRRLSIYKGIVMSRQ 176
           KP +KLGDIMGILN+RAVEASE+ERPIPDIRTGD+++IKLEVPENRRRLSIYKGIV+SRQ
Sbjct: 110 KPIIKLGDIMGILNRRAVEASENERPIPDIRTGDILQIKLEVPENRRRLSIYKGIVISRQ 169

Query: 177 NAGIHTTIRIRRIIAGIGVEIVFPL 201
           NAGIHTTIR+RRIIAGIGVEIVFPL
Sbjct: 170 NAGIHTTIRVRRIIAGIGVEIVFPL 194

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449458994|ref|XP_004147231.1| PREDICTED: 50S ribosomal protein L19, chloroplastic-like [Cucumis sativus] gi|449523724|ref|XP_004168873.1| PREDICTED: 50S ribosomal protein L19, chloroplastic-like [Cucumis sativus]

 Score =  190 bits (482), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 115/201 (57%), Positives = 140/201 (69%), Gaps = 15/201 (7%)

Query: 1   MGSQVLPQALHWIPRSSTQCIPSKRLGFSTVLSRGPFVSHGVSVSAKPIGWNLGFFVNAQ 60
           M S++LPQA+  IPR+  QC P +RLGF + +S G  VS     S+  IG +    V A 
Sbjct: 1   MASKILPQAVISIPRNPNQCAP-RRLGFCSAVS-GTRVSFSTLSSSS-IGSHFHHTVAAP 57

Query: 61  VKDSFVVRAEANEEAEANESIEEEQNEAVQAQGDVVVAVEAESEDKVEEEEVKAPRKPRV 120
           ++ +FVVRAEAN EA++      E       + D             + EE K  RKPRV
Sbjct: 58  LRRAFVVRAEANPEADSAAEEAPEAEVEAAVESDA------------QPEEEKPSRKPRV 105

Query: 121 KLGDIMGILNKRAVEASESERPIPDIRTGDVVEIKLEVPENRRRLSIYKGIVMSRQNAGI 180
           KLGD+MGILNKRA+EASE ERPIPDIRTGD+VE+KLEV ENRRRLS+Y+GIV+S+QNAGI
Sbjct: 106 KLGDVMGILNKRAIEASEKERPIPDIRTGDIVELKLEVQENRRRLSVYRGIVISKQNAGI 165

Query: 181 HTTIRIRRIIAGIGVEIVFPL 201
           HTTIRIRRIIAG+GVEIVFPL
Sbjct: 166 HTTIRIRRIIAGVGVEIVFPL 186

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147854523|emb|CAN82787.1| hypothetical protein VITISV_037813 [Vitis vinifera]

 Score =  189 bits (480), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 117/213 (54%), Positives = 139/213 (65%), Gaps = 29/213 (13%)

Query: 1   MGSQVLPQALHWIPRSSTQCIPSKRLGFSTV------------LSRGPFVSHGVSVSAKP 48
           M S+VLPQAL   PRSS Q  P K+LG ST             LS   F S+      +P
Sbjct: 1   MASKVLPQALFITPRSSNQX-PPKKLGLSTFPSPRSXSLNLNRLSTSRFSSNSFXFHFRP 59

Query: 49  IGWNLGFFVNAQVKDSFVVRAEANEEAEANESIEEEQNEAVQAQGDVVVAVEAESEDKVE 108
           I  +   F        F+V AEA+ E E      +E  E  +   +    V+ ++ED   
Sbjct: 60  IVVSPKRF--------FIVXAEADNEGELGP---DENTEEEETVSETESEVKLDAED--- 105

Query: 109 EEEVKAPRKPRVKLGDIMGILNKRAVEASESERPIPDIRTGDVVEIKLEVPENRRRLSIY 168
             E K PRKPRVKLGDIMGILNKRA+EASE ERP+PD+RTGD+VEIKLEVPENRRRLSIY
Sbjct: 106 --EAKPPRKPRVKLGDIMGILNKRAIEASEKERPVPDLRTGDIVEIKLEVPENRRRLSIY 163

Query: 169 KGIVMSRQNAGIHTTIRIRRIIAGIGVEIVFPL 201
           KGIV+S+QNAGIHTTIR+RRIIAG+GVEIVFP+
Sbjct: 164 KGIVISKQNAGIHTTIRVRRIIAGVGVEIVFPV 196

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255629017|gb|ACU14853.1| unknown [Glycine max]

 Score =  186 bits (473), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 109/203 (53%), Positives = 130/203 (64%), Gaps = 28/203 (13%)

Query: 1   MGSQVLPQALHWIPRSSTQCIPSKRLGFSTVLSRGPFVSHGVSVSAKPIGWNLGFFVNAQ 60
           M SQVL QAL            + +L F +       +S    V + PI W     +   
Sbjct: 1   MASQVLLQALF-----------APKLSFPSSSRNVALISR---VPSTPISWRCTPLI--- 43

Query: 61  VKDSFVVRAEANEEA--EANESIEEEQNEAVQAQGDVVVAVEAESEDKVEEEEVKAPRKP 118
            K SFVVRA+ N +   EA E +  +  E V          E E+E   + E  K+PRKP
Sbjct: 44  AKPSFVVRADTNLDGGGEATEDVPSDNAEKVS---------EGEAEQVSDSEAPKSPRKP 94

Query: 119 RVKLGDIMGILNKRAVEASESERPIPDIRTGDVVEIKLEVPENRRRLSIYKGIVMSRQNA 178
           RVKLGDIMGILN+RA+EASE +RP PDIRTGD+VEIKLEVPEN+RRLSIYKGIV+S+QNA
Sbjct: 95  RVKLGDIMGILNQRAIEASEKQRPTPDIRTGDIVEIKLEVPENKRRLSIYKGIVISKQNA 154

Query: 179 GIHTTIRIRRIIAGIGVEIVFPL 201
           GIHTTIRIRRIIAG GVEIVFP+
Sbjct: 155 GIHTTIRIRRIIAGTGVEIVFPV 177

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351720814|ref|NP_001236421.1| uncharacterized protein LOC100500328 [Glycine max] gi|255630036|gb|ACU15370.1| unknown [Glycine max]

 Score =  186 bits (471), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 110/203 (54%), Positives = 132/203 (65%), Gaps = 27/203 (13%)

Query: 1   MGSQVLPQALHWIPRSSTQCIPSKRLGFSTVLSRGPFVSHGVSVSAKPIGWNLGFFVNAQ 60
           M SQVL Q   + P+ S    PS     + ++SR P         + PI W     +   
Sbjct: 1   MASQVLLQQALFAPKLS---FPSSSRNVA-LISRVP---------STPISWRCTPLI--- 44

Query: 61  VKDSFVVRAEANEEA--EANESIEEEQNEAVQAQGDVVVAVEAESEDKVEEEEVKAPRKP 118
            K SFVVRA+ N +   EA E +  +  E V          E E+E   + E  K+PRKP
Sbjct: 45  AKPSFVVRADTNLDGGGEATEDVPSDNAEKVS---------EGEAEQVSDSEAPKSPRKP 95

Query: 119 RVKLGDIMGILNKRAVEASESERPIPDIRTGDVVEIKLEVPENRRRLSIYKGIVMSRQNA 178
           RVKLGDIMGILN+RA+EASE +RP PDIRTGD+VEIKLEVPEN+RRLSIYKGIV+S+QNA
Sbjct: 96  RVKLGDIMGILNQRAIEASEKQRPTPDIRTGDIVEIKLEVPENKRRLSIYKGIVISKQNA 155

Query: 179 GIHTTIRIRRIIAGIGVEIVFPL 201
           GIHTTIRIRRIIAG GVEIVFP+
Sbjct: 156 GIHTTIRIRRIIAGTGVEIVFPV 178

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388517759|gb|AFK46941.1| unknown [Lotus japonicus]

 Score =  184 bits (468), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 115/203 (56%), Positives = 137/203 (67%), Gaps = 14/203 (6%)

Query: 1   MGSQVLPQA--LHWIPRSSTQCIPSKRLGFSTVLSRGPFVSHGVSVSAKPIGWNLGFFVN 58
           M SQV  Q   L + P    QC P+K LG S+ L    F      +S+  I W     ++
Sbjct: 1   MASQVFLQQGLLLFAP---NQCSPTK-LGVSSCLGSRNFPL----ISSTSISWRCNNPLS 52

Query: 59  AQVKDSFVVRAEANEEAEANESIEEEQNEAVQAQGDVVVAVEAESEDKVEEEEVKAPRKP 118
           A  K SFVVRA++N +A ++ + E  + E    Q  V    EAE     E E+ K PRK 
Sbjct: 53  A--KPSFVVRADSNVDATSDNAGEVPEAEGSVDQ--VPEDGEAELASDSEVEQPKPPRKQ 108

Query: 119 RVKLGDIMGILNKRAVEASESERPIPDIRTGDVVEIKLEVPENRRRLSIYKGIVMSRQNA 178
           RVKLGD+MGILN+RA+EASES RP P+IRTGDVVEIKLEVPEN+RRLSIYKGIV+SRQNA
Sbjct: 109 RVKLGDVMGILNQRAIEASESMRPTPEIRTGDVVEIKLEVPENKRRLSIYKGIVISRQNA 168

Query: 179 GIHTTIRIRRIIAGIGVEIVFPL 201
           GIHTTIRIRRIIAG GVEIVFP+
Sbjct: 169 GIHTTIRIRRIIAGTGVEIVFPI 191

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351722420|ref|NP_001238523.1| uncharacterized protein LOC100305649 [Glycine max] gi|255626193|gb|ACU13441.1| unknown [Glycine max]

 Score =  181 bits (458), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 108/203 (53%), Positives = 130/203 (64%), Gaps = 27/203 (13%)

Query: 1   MGSQVLPQALHWIPRSSTQCIPSKRLGFSTVLSRGPFVSHGVSVSAKPIGWNLGFFVNAQ 60
           M SQVL Q   + P+ S    PS     + ++SR P         + PI W     +   
Sbjct: 1   MASQVLLQQALFAPKLS---FPSSSRNVA-LISRVP---------STPISWRCTPLI--- 44

Query: 61  VKDSFVVRAEANEEA--EANESIEEEQNEAVQAQGDVVVAVEAESEDKVEEEEVKAPRKP 118
            K SF VRA++N E   EA E +     + V          E E E   + E  K+PRKP
Sbjct: 45  AKPSFAVRADSNVEGAGEATEDVPSYNVDEVS---------EGEGEQVSDSEAPKSPRKP 95

Query: 119 RVKLGDIMGILNKRAVEASESERPIPDIRTGDVVEIKLEVPENRRRLSIYKGIVMSRQNA 178
           RVKLGD+MGILN+RA+EASE +RP PDIRTGD+VEIKLEVPEN+RRLSIYKGIV+S+QNA
Sbjct: 96  RVKLGDVMGILNQRAIEASEKQRPTPDIRTGDIVEIKLEVPENKRRLSIYKGIVISKQNA 155

Query: 179 GIHTTIRIRRIIAGIGVEIVFPL 201
           GIHTTIRIRRIIAG GVEIVFP+
Sbjct: 156 GIHTTIRIRRIIAGTGVEIVFPV 178

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	201
TAIR|locus:2129186	225	AT4G17560 [Arabidopsis thalian	0.427	0.382	0.639	8.2e-37
TAIR|locus:2171609	229	AT5G47190 [Arabidopsis thalian	0.432	0.379	0.632	1.5e-33
TAIR|locus:2139757	225	AT4G11630 [Arabidopsis thalian	0.383	0.342	0.441	5e-12
TAIR|locus:2032457	222	AT1G24240 [Arabidopsis thalian	0.383	0.346	0.428	1e-11
TAIR|locus:2181975	229	AT5G11750 [Arabidopsis thalian	0.383	0.336	0.428	1e-11
TIGR_CMR|CBU_0442	115	CBU_0442 "ribosomal protein L1	0.338	0.591	0.314	5e-05
TIGR_CMR|GSU_0648	118	GSU_0648 "ribosomal protein L1	0.363	0.618	0.28	6.3e-05
TIGR_CMR|CHY_1428	113	CHY_1428 "ribosomal protein L1	0.348	0.619	0.267	0.00017
UNIPROTKB|P0A7K6	115	rplS "50S ribosomal subunit pr	0.338	0.591	0.275	0.00057

TAIR|locus:2129186 AT4G17560 [Arabidopsis thaliana (taxid:3702)]

 Score = 289 (106.8 bits), Expect = 8.2e-37, Sum P(2) = 8.2e-37
 Identities = 55/86 (63%), Positives = 66/86 (76%)

Query:   116 RKPRVKLGDIMGILNKRAVEASESERPIPDIRTGDVVEIKLEVPENRRRLSIYKGIVMSR 175
             RKPR+KLGD+MGILN++A+E +E  RP+P+IRTGD+VEIKLEVPEN+RRLSIYKGIVMSR
Sbjct:   105 RKPRIKLGDVMGILNQKAIEVAEKVRPVPEIRTGDIVEIKLEVPENKRRLSIYKGIVMSR 164

Query:   176 QNXXXXXXXXXXXXXXXXXVEIVFPL 201
             QN                 VEIVFP+
Sbjct:   165 QNAGIHTTIRIRRIIAGIGVEIVFPI 190

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0042254 "ribosome biogenesis" evidence=ISS

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0010267 "production of ta-siRNAs involved in RNA interference" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=RCA

GO:0051607 "defense response to virus" evidence=RCA

TAIR|locus:2171609 AT5G47190 [Arabidopsis thaliana (taxid:3702)]

 Score = 280 (103.6 bits), Expect = 1.5e-33, Sum P(2) = 1.5e-33
 Identities = 55/87 (63%), Positives = 65/87 (74%)

Query:   115 PRKPRVKLGDIMGILNKRAVEASESERPIPDIRTGDVVEIKLEVPENRRRLSIYKGIVMS 174
             P K RVKLGDIMG+LNK+A+E +E+ RP+P +RTGD+VEIKLEVPEN+RRLSIYKGIVMS
Sbjct:   108 PWKTRVKLGDIMGLLNKKAIEVAETVRPVPGLRTGDIVEIKLEVPENKRRLSIYKGIVMS 167

Query:   175 RQNXXXXXXXXXXXXXXXXXVEIVFPL 201
             RQN                 VEIVFP+
Sbjct:   168 RQNAGIHTTIRIRRIIAGIGVEIVFPI 194

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0042254 "ribosome biogenesis" evidence=ISS

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0010267 "production of ta-siRNAs involved in RNA interference" evidence=RCA

GO:0016226 "iron-sulfur cluster assembly" evidence=RCA

GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

GO:0051607 "defense response to virus" evidence=RCA

TAIR|locus:2139757 AT4G11630 [Arabidopsis thaliana (taxid:3702)]

 Score = 162 (62.1 bits), Expect = 5.0e-12, P = 5.0e-12
 Identities = 34/77 (44%), Positives = 49/77 (63%)

Query:   125 IMGILNKRAVEASESERPIPDIRTGDVVEIKLEVPENRRRLSIYKGIVMSRQNXXXXXXX 184
             IM I++K AVE   S R IP+I+ G +V++K+EVPEN+RR+SI KG+V++R+N       
Sbjct:   115 IMQIVDKEAVEEVRSLREIPEIKPGYIVQLKVEVPENKRRVSIVKGVVIARRNAGLNSTF 174

Query:   185 XXXXXXXXXXVEIVFPL 201
                       VE +FPL
Sbjct:   175 RIRRLVAGVGVESMFPL 191

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0042254 "ribosome biogenesis" evidence=ISS

TAIR|locus:2032457 AT1G24240 [Arabidopsis thaliana (taxid:3702)]

 Score = 159 (61.0 bits), Expect = 1.0e-11, P = 1.0e-11
 Identities = 33/77 (42%), Positives = 49/77 (63%)

Query:   125 IMGILNKRAVEASESERPIPDIRTGDVVEIKLEVPENRRRLSIYKGIVMSRQNXXXXXXX 184
             IM I++K AVE   + R IP+I+ G +V++K+EVPEN+RR+SI KG+V++R+N       
Sbjct:   112 IMQIVDKEAVEEVRTLREIPEIKPGYIVQLKVEVPENKRRVSIVKGVVIARRNAGLNSTF 171

Query:   185 XXXXXXXXXXVEIVFPL 201
                       VE +FPL
Sbjct:   172 RIRRLVAGVGVESMFPL 188

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0042254 "ribosome biogenesis" evidence=ISS

GO:0010267 "production of ta-siRNAs involved in RNA interference" evidence=RCA

GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=RCA

GO:0051607 "defense response to virus" evidence=RCA

TAIR|locus:2181975 AT5G11750 [Arabidopsis thaliana (taxid:3702)]

 Score = 159 (61.0 bits), Expect = 1.0e-11, P = 1.0e-11
 Identities = 33/77 (42%), Positives = 49/77 (63%)

Query:   125 IMGILNKRAVEASESERPIPDIRTGDVVEIKLEVPENRRRLSIYKGIVMSRQNXXXXXXX 184
             IM I++K AVE   + R IP+I+ G +V++K+EVPEN+RR+SI KG+V++R+N       
Sbjct:   119 IMQIVDKEAVEEVRNLREIPEIKPGYIVQLKVEVPENKRRVSIVKGVVIARRNAGLNSTF 178

Query:   185 XXXXXXXXXXVEIVFPL 201
                       VE +FPL
Sbjct:   179 RIRRLVAGVGVESMFPL 195

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0042254 "ribosome biogenesis" evidence=ISS

TIGR_CMR|CBU_0442 CBU_0442 "ribosomal protein L19" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 96 (38.9 bits), Expect = 5.0e-05, P = 5.0e-05
 Identities = 22/70 (31%), Positives = 38/70 (54%)

Query:   134 VEASESE-RPIPDIRTGDVVEIKLEVPE-NRRRLSIYKGIVMSRQNXXXXXXXXXXXXXX 191
             +E  +++ + IPD R GD V ++++V E NR RL  ++G+V++R++              
Sbjct:     8 LETEQTQGKEIPDFRAGDTVTVQVKVKEGNRERLQAFEGVVIARRHRGLNSSFTVRKVSH 67

Query:   192 XXXVEIVFPL 201
                VE VF L
Sbjct:    68 GEGVERVFQL 77

GO:0003735 "structural constituent of ribosome" evidence=ISS

TIGR_CMR|GSU_0648 GSU_0648 "ribosomal protein L19" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 95 (38.5 bits), Expect = 6.3e-05, P = 6.3e-05
 Identities = 21/75 (28%), Positives = 40/75 (53%)

Query:   129 LNK-RAVEASESERPIPDIRTGDVVEIKLEVPE-NRRRLSIYKGIVMSRQNXXXXXXXXX 186
             +NK  A+E  + ++ IP  + GD +++ +++ E ++ R+  ++G+ +SRQN         
Sbjct:     1 MNKIDAIELEQMKKNIPPFKPGDTLKVHVKIVEGDKSRIQAFQGVCISRQNGGIRESFTV 60

Query:   187 XXXXXXXXVEIVFPL 201
                     VE VFPL
Sbjct:    61 RKISNNIGVERVFPL 75

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

GO:0042254 "ribosome biogenesis" evidence=ISS

TIGR_CMR|CHY_1428 CHY_1428 "ribosomal protein L19" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 91 (37.1 bits), Expect = 0.00017, P = 0.00017
 Identities = 19/71 (26%), Positives = 35/71 (49%)

Query:   132 RAVEASESERPIPDIRTGDVVEIKLEVPE-NRRRLSIYKGIVMSRQNXXXXXXXXXXXXX 190
             +++E  +  + +P+ R GD V++  +V E NR R+  Y+G+V+ ++              
Sbjct:     5 KSLEEEQLRKDLPEFRPGDTVKVYFKVIEGNRERIQPYEGVVIRKRGSGLSATFTVRRVS 64

Query:   191 XXXXVEIVFPL 201
                 VE  FPL
Sbjct:    65 YGIGVERTFPL 75

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

UNIPROTKB|P0A7K6 rplS "50S ribosomal subunit protein L19" [Escherichia coli K-12 (taxid:83333)]

 Score = 86 (35.3 bits), Expect = 0.00057, P = 0.00057
 Identities = 19/69 (27%), Positives = 36/69 (52%)

Query:   132 RAVEASESERPIPDIRTGDVVEIKLEVPE-NRRRLSIYKGIVMSRQNXXXXXXXXXXXXX 190
             + +E  + ++ +P  R GD VE+K+ V E +++RL  ++G+V++ +N             
Sbjct:     6 KQLEQEQMKQDVPSFRPGDTVEVKVWVVEGSKKRLQAFEGVVIAIRNRGLHSAFTVRKIS 65

Query:   191 XXXXVEIVF 199
                 VE VF
Sbjct:    66 NGEGVERVF 74


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.138   0.407    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      201       139   0.00091  102 3  11 22  0.41    31
                                                     30  0.46    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  9
  No. of states in DFA:  569 (61 KB)
  Total size of DFA:  120 KB (2077 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  11.08u 0.21s 11.29t   Elapsed:  00:00:01
  Total cpu time:  11.08u 0.21s 11.29t   Elapsed:  00:00:01
  Start:  Fri May 10 00:30:29 2013   End:  Fri May 10 00:30:30 2013

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0019843 "rRNA binding" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8W463	RK191_ARATH	No assigned EC number	0.5776	0.9104	0.8133	yes	no
P82413	RK19_SPIOL	No assigned EC number	0.5190	0.9402	0.8111	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	201
pfam01245	113	pfam01245, Ribosomal_L19, Ribosomal protein L19	2e-19
PRK05338	116	PRK05338, rplS, 50S ribosomal protein L19; Provisi	6e-15
CHL00084	117	CHL00084, rpl19, ribosomal protein L19	5e-14
COG0335	115	COG0335, RplS, Ribosomal protein L19 [Translation,	1e-13
TIGR01024	113	TIGR01024, rplS_bact, ribosomal protein L19, bacte	1e-12

>gnl|CDD|201683 pfam01245, Ribosomal_L19, Ribosomal protein L19

 Score = 79.5 bits (197), Expect = 2e-19
 Identities = 24/71 (33%), Positives = 52/71 (73%), Gaps = 1/71 (1%)

Query: 132 RAVEASESERPIPDIRTGDVVEIKLEVPE-NRRRLSIYKGIVMSRQNAGIHTTIRIRRII 190
           + +EA + ++ +P+ R GD V++ +++ E N+ R+ +++G+V++++  G+++T  +R+I 
Sbjct: 5   KEIEAEQLKKDLPEFRVGDTVKVHVKIKEGNKERIQVFEGVVIAKRGRGLNSTFTVRKIS 64

Query: 191 AGIGVEIVFPL 201
            G+GVE VFPL
Sbjct: 65  QGVGVERVFPL 75

Length = 113

>gnl|CDD|235418 PRK05338, rplS, 50S ribosomal protein L19; Provisional

 Score = 67.4 bits (166), Expect = 6e-15
 Identities = 26/71 (36%), Positives = 47/71 (66%), Gaps = 1/71 (1%)

Query: 132 RAVEASESERPIPDIRTGDVVEIKLEVPE-NRRRLSIYKGIVMSRQNAGIHTTIRIRRII 190
           + +EA +  + IP+ R GD V + ++V E N+ R+  ++G+V++R+  G++ T  +R+I 
Sbjct: 5   KEIEAEQLRKDIPEFRPGDTVRVHVKVVEGNKERIQAFEGVVIARRGRGLNETFTVRKIS 64

Query: 191 AGIGVEIVFPL 201
            G+GVE  FPL
Sbjct: 65  YGVGVERTFPL 75

Length = 116

>gnl|CDD|177023 CHL00084, rpl19, ribosomal protein L19

 Score = 65.3 bits (160), Expect = 5e-14
 Identities = 30/78 (38%), Positives = 53/78 (67%), Gaps = 4/78 (5%)

Query: 128 ILNKRAVEASESE---RPIPDIRTGDVVEIKLEVPE-NRRRLSIYKGIVMSRQNAGIHTT 183
           +  ++ V+  ESE   + +P IR GD V++ + + E N+ R+  Y+G V++++N+G++TT
Sbjct: 2   MKLQQLVKEIESEFLKKNLPKIRVGDTVKVGVLIQEGNKERVQFYEGTVIAKKNSGLNTT 61

Query: 184 IRIRRIIAGIGVEIVFPL 201
           I +R++  GIGVE VF L
Sbjct: 62  ITVRKVFQGIGVERVFLL 79

Length = 117

>gnl|CDD|223412 COG0335, RplS, Ribosomal protein L19 [Translation, ribosomal structure and biogenesis]

 Score = 64.2 bits (157), Expect = 1e-13
 Identities = 25/71 (35%), Positives = 46/71 (64%), Gaps = 1/71 (1%)

Query: 132 RAVEASESERPIPDIRTGDVVEIKLEVPE-NRRRLSIYKGIVMSRQNAGIHTTIRIRRII 190
           + +E  + ++ IP  R GD V + +++ E ++ R+  ++G+V++R+  GI  T  +R+I 
Sbjct: 7   QQLEQEQIKKDIPSFRPGDTVRVHVKIVEGSKERVQAFEGVVIARRGRGISETFTVRKIS 66

Query: 191 AGIGVEIVFPL 201
            G+GVE VFPL
Sbjct: 67  YGVGVERVFPL 77

Length = 115

>gnl|CDD|130096 TIGR01024, rplS_bact, ribosomal protein L19, bacterial type

 Score = 61.6 bits (150), Expect = 1e-12
 Identities = 24/71 (33%), Positives = 47/71 (66%), Gaps = 1/71 (1%)

Query: 132 RAVEASESERPIPDIRTGDVVEIKLEVPE-NRRRLSIYKGIVMSRQNAGIHTTIRIRRII 190
           + +E  + ++ +PD R GD V + +++ E  + R+ +++G+V++R+  GI  T  +R+I 
Sbjct: 5   KQIEQEQLKKDLPDFRVGDTVRVHVKIVEGKKERIQVFEGVVIARRGGGIGETFTVRKIS 64

Query: 191 AGIGVEIVFPL 201
            G+GVE +FPL
Sbjct: 65  YGVGVERIFPL 75

This model describes bacterial ribosomoal protein L19 and its chloroplast equivalent. Putative mitochondrial L19 are found in several species (but not Saccharomyces cerevisiae) and score between trusted and noise cutoffs [Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 113

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	201
COG0335	115	RplS Ribosomal protein L19 [Translation, ribosomal	99.95
CHL00084	117	rpl19 ribosomal protein L19	99.95
PRK05338	116	rplS 50S ribosomal protein L19; Provisional	99.95
TIGR01024	113	rplS_bact ribosomal protein L19, bacterial type. T	99.95
PF01245	113	Ribosomal_L19: Ribosomal protein L19; InterPro: IP	99.94
KOG1698	201	consensus Mitochondrial/chloroplast ribosomal prot	99.89
PF05641	68	Agenet: Agenet domain; InterPro: IPR008395 This do	85.18
smart00743	61	Agenet Tudor-like domain present in plant sequence	81.46

>COG0335 RplS Ribosomal protein L19 [Translation, ribosomal structure and biogenesis]

Probab=99.95  E-value=1.3e-28  Score=195.13  Aligned_cols=70  Identities=36%  Similarity=0.763  Sum_probs=67.2

Q ss_pred             HHHHhhhcCCCCCCCCCCCEEEEEEEeec-CCcccceEEEEEEEeecCCccceEEEEeeeCCeeeEEEeeC
Q 028968          132 RAVEASESERPIPDIRTGDVVEIKLEVPE-NRRRLSIYKGIVMSRQNAGIHTTIRIRRIIAGIGVEIVFPL  201 (201)
Q Consensus       132 e~IE~~q~kkdiPeFr~GDtVrV~v~I~E-nKeRiQ~FeGIVIarrn~Gi~sTFTVRKIs~GVGVER~FPL  201 (201)
                      +++++.|+++++|+|+|||||+|+++|.| +|+|+|.|+|+||+++|+|+++||||||+++|+||||+||+
T Consensus         7 ~~le~~q~~~~iP~f~~GDtvrv~vki~Eg~keR~Q~FeGvVia~r~~G~~~tftvRkis~G~GVEr~Fp~   77 (115)
T COG0335           7 QQLEQEQIKKDIPSFRPGDTVRVHVKIVEGSKERVQAFEGVVIARRGRGISETFTVRKISYGVGVERVFPL   77 (115)
T ss_pred             HHHHHHHHHhhCCCCCCCCEEEEEEEEEeCCeEEEeeeeEEEEEECCCCccceEEEEEeecCceEEEEeec
Confidence            56788888889999999999999999999 99999999999999999999999999999999999999996

>CHL00084 rpl19 ribosomal protein L19

Probab=99.95  E-value=2.8e-28  Score=193.45  Aligned_cols=75  Identities=36%  Similarity=0.753  Sum_probs=69.9

Q ss_pred             HHHHHHHHHHHhhhcCCCCCCCCCCCEEEEEEEeec-CCcccceEEEEEEEeecCCccceEEEEeeeCCeeeEEEeeC
Q 028968          125 IMGILNKRAVEASESERPIPDIRTGDVVEIKLEVPE-NRRRLSIYKGIVMSRQNAGIHTTIRIRRIIAGIGVEIVFPL  201 (201)
Q Consensus       125 lM~iLnke~IE~~q~kkdiPeFr~GDtVrV~v~I~E-nKeRiQ~FeGIVIarrn~Gi~sTFTVRKIs~GVGVER~FPL  201 (201)
                      +++++  +++++.++++++|+|++||||+|+++|.| +|+|+|.|+|+||+++|+|+++||||||+++|+||||+|||
T Consensus         4 ~~~~i--~~~~~~~~~~~~p~f~~GDtV~V~~~i~eg~k~R~q~F~GvvI~~r~~G~~~tftvRki~~gvGVEr~fpl   79 (117)
T CHL00084          4 LQQLV--KEIESEFLKKNLPKIRVGDTVKVGVLIQEGNKERVQFYEGTVIAKKNSGLNTTITVRKVFQGIGVERVFLL   79 (117)
T ss_pred             HHHHH--HHHHHHHhhcCCCccCCCCEEEEEEEEecCCeeEeceEEEEEEEEeCCCCCeeEEEEEeccCccEEEEEec
Confidence            34455  56888888999999999999999999999 99999999999999999999999999999999999999996

>PRK05338 rplS 50S ribosomal protein L19; Provisional

Probab=99.95  E-value=6.3e-28  Score=191.07  Aligned_cols=70  Identities=37%  Similarity=0.798  Sum_probs=66.4

Q ss_pred             HHHHhhhcCCCCCCCCCCCEEEEEEEeec-CCcccceEEEEEEEeecCCccceEEEEeeeCCeeeEEEeeC
Q 028968          132 RAVEASESERPIPDIRTGDVVEIKLEVPE-NRRRLSIYKGIVMSRQNAGIHTTIRIRRIIAGIGVEIVFPL  201 (201)
Q Consensus       132 e~IE~~q~kkdiPeFr~GDtVrV~v~I~E-nKeRiQ~FeGIVIarrn~Gi~sTFTVRKIs~GVGVER~FPL  201 (201)
                      +.+|+.++++++|+|++||||+|+++|.| +|+|+|.|+|+||+++|+|+++||||||+++|+||||+|||
T Consensus         5 ~~~~~~~~~~~~p~f~~GD~V~V~~~i~eg~k~R~q~f~GvvI~~~~~G~~~tftvRki~~gvGVEr~fpl   75 (116)
T PRK05338          5 KEIEAEQLRKDIPEFRPGDTVRVHVKVVEGNKERIQAFEGVVIARRGRGLNETFTVRKISYGVGVERTFPL   75 (116)
T ss_pred             HHHHHHHhhcCCCCcCCCCEEEEEEEEccCCceEeccEEEEEEEEeCCCCCceEEEEEcccCccEEEEecC
Confidence            45677777889999999999999999999 89999999999999999999999999999999999999997

>TIGR01024 rplS_bact ribosomal protein L19, bacterial type

Probab=99.95  E-value=8.2e-28  Score=189.70  Aligned_cols=70  Identities=34%  Similarity=0.808  Sum_probs=66.6

Q ss_pred             HHHHhhhcCCCCCCCCCCCEEEEEEEeec-CCcccceEEEEEEEeecCCccceEEEEeeeCCeeeEEEeeC
Q 028968          132 RAVEASESERPIPDIRTGDVVEIKLEVPE-NRRRLSIYKGIVMSRQNAGIHTTIRIRRIIAGIGVEIVFPL  201 (201)
Q Consensus       132 e~IE~~q~kkdiPeFr~GDtVrV~v~I~E-nKeRiQ~FeGIVIarrn~Gi~sTFTVRKIs~GVGVER~FPL  201 (201)
                      +.+|+.++++++|+|++||||+|+++|.| +|+|+|.|+|+||+++|+|+++||||||+++|+||||+|||
T Consensus         5 ~~~e~~~~~~~ip~f~~GD~v~V~~~i~eg~k~R~q~f~GvvI~~~~~G~~~tftvR~i~~gvGVEr~fpl   75 (113)
T TIGR01024         5 KQIEQEQLKKDLPDFRVGDTVRVHVKIVEGKKERIQVFEGVVIARRGGGIGETFTVRKISYGVGVERIFPL   75 (113)
T ss_pred             HHHHHHHhhcCCCccCCCCEEEEEEEEccCCceEcccEEEEEEEEeCCCCceEEEEEEeccCccEEEEEEc
Confidence            45677778899999999999999999999 99999999999999999999999999999999999999997

This model describes bacterial ribosomoal protein L19 and its chloroplast equivalent. Putative mitochondrial L19 are found in several species (but not Saccharomyces cerevisiae) and score between trusted and noise cutoffs.

>PF01245 Ribosomal_L19: Ribosomal protein L19; InterPro: IPR001857 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=99.94  E-value=5.4e-27  Score=184.38  Aligned_cols=74  Identities=35%  Similarity=0.814  Sum_probs=70.1

Q ss_pred             HHHHHHHHHHhhhcCCCCCCCCCCCEEEEEEEeec-CCcccceEEEEEEEeecCCccceEEEEeeeCCeeeEEEeeC
Q 028968          126 MGILNKRAVEASESERPIPDIRTGDVVEIKLEVPE-NRRRLSIYKGIVMSRQNAGIHTTIRIRRIIAGIGVEIVFPL  201 (201)
Q Consensus       126 M~iLnke~IE~~q~kkdiPeFr~GDtVrV~v~I~E-nKeRiQ~FeGIVIarrn~Gi~sTFTVRKIs~GVGVER~FPL  201 (201)
                      |++|  +++|+.++++++|+|++||+|+|++++.| +|+|+|.|+|+||+++|+|+++||||||+++|+||||+|||
T Consensus         1 ~~~i--~~~e~~~~~~~~p~f~~GD~v~V~~~i~e~~k~r~q~f~GvvIa~~~~g~~ssftlR~~~~g~gVE~~f~l   75 (113)
T PF01245_consen    1 MNLI--EEVEREQIKKDIPEFRVGDTVRVTYKISEGNKERIQVFEGVVIARRRRGLNSSFTLRNISQGVGVERVFPL   75 (113)
T ss_dssp             -HHH--HHHHHTTCSSSSSSSSSSSEEEEEEEEESSSSEEEEEEEEEEEEEEBSSTSSEEEEEEEETTEEEEEEEET
T ss_pred             ChHH--HHHHHHHhhcCCCCcCCCCEEEEEEEEecCCCceeEEEEEEEEEEECCCCCeeEEEEEEecCccEEEEEEc
Confidence            6666  67889989999999999999999999999 99999999999999999999999999999999999999997

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L19 is one of the proteins from the large ribosomal subunit [, ]. In Escherichia coli, L19 is known to be located at the 30S-50S ribosomal subunit interface [] and may play a role in the structure and function of the aminoacyl-tRNA binding site. It belongs to a family of ribosomal proteins, including L19 from bacteria and the chloroplasts of red algae. L19 is a protein of 120 to 130 amino-acid residues.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3HUZ_T 3V2D_T 3I8I_R 2XG2_T 2V49_T 2XUX_T 3HUX_T 3I9C_R 3V25_T 3UZ2_R ....

>KOG1698 consensus Mitochondrial/chloroplast ribosomal protein L19 [Translation, ribosomal structure and biogenesis]

Probab=99.89  E-value=2.1e-23  Score=178.20  Aligned_cols=144  Identities=31%  Similarity=0.450  Sum_probs=112.7

Q ss_pred             eeeeec---CCCccccceeeccccceeEEeeccchhhhcchhhHHHhHHHHhhccceeeeecccccccchhhhccCCCCC
Q 028968           42 VSVSAK---PIGWNLGFFVNAQVKDSFVVRAEANEEAEANESIEEEQNEAVQAQGDVVVAVEAESEDKVEEEEVKAPRKP  118 (201)
Q Consensus        42 ~~~~~~---~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~e~~~~~~~e~~~~~p~r~~  118 (201)
                      +++++.   +..|++.+.+.....++|+..+|.-..+.....+                ..++.-+...-.....+..+.
T Consensus         6 ~~~~r~~~~~~a~~~~v~l~~~~~~~~~~~~e~~~~a~~~~~~----------------~~~~~~~~~~~~~~~~~f~~~   69 (201)
T KOG1698|consen    6 LGFDRFPMFRAASYRNVSLKGKWFSSFIAISEERCFAPTKRPS----------------VNEPSPESPCVVEQYPEFLPL   69 (201)
T ss_pred             eeeecccccchhhhheeecccceeeeeccccccccccCCCCcc----------------cccCCCCCccccccCcccccc
Confidence            444444   3566777777778888999888764333322220                123322222222344556667


Q ss_pred             CCchhHHHHHHHHHHHHhhhcCCCCCCCCCCCEEEEEEEeecCCcccceEEEEEEEeecCCccceEEEEeeeCCeeeEEE
Q 028968          119 RVKLGDIMGILNKRAVEASESERPIPDIRTGDVVEIKLEVPENRRRLSIYKGIVMSRQNAGIHTTIRIRRIIAGIGVEIV  198 (201)
Q Consensus       119 ~~klg~lM~iLnke~IE~~q~kkdiPeFr~GDtVrV~v~I~EnKeRiQ~FeGIVIarrn~Gi~sTFTVRKIs~GVGVER~  198 (201)
                      ++..+++|++|++++++...+.+++|+|++||+|+|++..+++|.++..|.||||+|+|.|+++||+|||++.|+|||.+
T Consensus        70 ~~~~~~~~e~Ldr~a~~~rr~~r~iPe~~~G~Iv~V~s~~p~~k~k~s~f~Gi~I~R~~~Gl~atf~LRnvIagvGVEi~  149 (201)
T KOG1698|consen   70 RKVAKRIMEILDRQAVLERRKVRDIPEFKVGSIVRVTSEDPENKRKVSRFKGICIRRRNAGLNATFLLRNVIAGVGVEIV  149 (201)
T ss_pred             hhHHHHHHHhhCHHHHHHHHhcccCCccccccEEEEEecCCccCCceeEEEEEEEEecccCCcceEEeeehhhCceeEEE
Confidence            77789999999999999998889999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeC
Q 028968          199 FPL  201 (201)
Q Consensus       199 FPL  201 (201)
                      |||
T Consensus       150 ~pL  152 (201)
T KOG1698|consen  150 FPL  152 (201)
T ss_pred             Eec
Confidence            997

>PF05641 Agenet: Agenet domain; InterPro: IPR008395 This domain is related to the TUDOR domain IPR008191 from INTERPRO []

Probab=85.18  E-value=2.8  Score=29.69  Aligned_cols=38  Identities=18%  Similarity=0.318  Sum_probs=26.0

Q ss_pred             CCCCCEEEEEEEeecCCcccceEEEEEEEeecCCccceEEEEe
Q 028968          146 IRTGDVVEIKLEVPENRRRLSIYKGIVMSRQNAGIHTTIRIRR  188 (201)
Q Consensus       146 Fr~GDtVrV~v~I~EnKeRiQ~FeGIVIarrn~Gi~sTFTVRK  188 (201)
                      |++||.|+|...  |+.-|-.=|.|+|++..+.+   +|.|+-
T Consensus         1 F~~G~~VEV~s~--e~g~~gaWf~a~V~~~~~~~---~~~V~Y   38 (68)
T PF05641_consen    1 FKKGDEVEVSSD--EDGFRGAWFPATVLKENGDD---KYLVEY   38 (68)
T ss_dssp             --TT-EEEEEE---SBTT--EEEEEEEEEEETT----EEEEEE
T ss_pred             CCCCCEEEEEEc--CCCCCcEEEEEEEEEeCCCc---EEEEEE
Confidence            789999999753  34459999999999999876   788875

The function of the agenet domain is unknown. This signature matches one of the two Agenet domains in the FMR proteins [].; GO: 0003723 RNA binding; PDB: 2BKD_N 3O8V_A 3KUF_A 3H8Z_A.

>smart00743 Agenet Tudor-like domain present in plant sequences

Probab=81.46  E-value=9  Score=25.88  Aligned_cols=49  Identities=16%  Similarity=0.193  Sum_probs=35.7

Q ss_pred             CCCCCCCEEEEEEEeecCCcccceEEEEEEEeecCCccceEEEEeeeCCeeeEEEee
Q 028968          144 PDIRTGDVVEIKLEVPENRRRLSIYKGIVMSRQNAGIHTTIRIRRIIAGIGVEIVFP  200 (201)
Q Consensus       144 PeFr~GDtVrV~v~I~EnKeRiQ~FeGIVIarrn~Gi~sTFTVRKIs~GVGVER~FP  200 (201)
                      ..|++||.|.+....     .-.=|.|+|++..+   +..|.|+=...+.|-+-+|+
T Consensus         1 ~~~~~G~~Ve~~~~~-----~~~W~~a~V~~~~~---~~~~~V~~~~~~~~~~e~v~   49 (61)
T smart00743        1 SDFKKGDRVEVFSKE-----EDSWWEAVVTKVLG---DGKYLVRYLTESEPLKETVD   49 (61)
T ss_pred             CCcCCCCEEEEEECC-----CCEEEEEEEEEECC---CCEEEEEECCCCcccEEEEe
Confidence            368999999998752     56789999999887   45688887654466554443

Domain in plant sequences with possible chromatin-associated functions.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	201
3bbo_R	233	Homology Model For The Spinach Chloroplast 50s Subu		9e-25

>pdb|3BBO|R Chain R, Homology Model For The Spinach Chloroplast 50s Subunit Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome Length = 233

Iteration: 1
 Score =  109 bits (273), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 55/87 (63%), Positives = 65/87 (74%)
Query: 115 PRKPRVKLGDIMGILNKRAVEASESERPIPDIRTGDVVEIKLEVPENRRRLSIYKGIVMS 174
           PR+ RVKLGDIMGILNK+AV A+E  RP+P IRTGD+V+I+LEVPEN+RRLS+YKGIV+S
Sbjct: 112 PRQQRVKLGDIMGILNKKAVHAAEELRPVPGIRTGDIVQIRLEVPENKRRLSVYKGIVIS 171
Query: 175 RQNXXXXXXXXXXXXXXXXXVEIVFPL 201
           RQN                 VEIVFPL
Sbjct: 172 RQNAGIHTTIRIRRIIAGVGVEIVFPL 198

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	201
3bbo_R	233	Ribosomal protein L19; large ribosomal subunit, sp	4e-38
2ftc_K	98	39S ribosomal protein L19, mitochondrial; mitochon	4e-18
3r8s_P	114	50S ribosomal protein L19; protein biosynthesis, R	2e-14
3v2d_T	146	50S ribosomal protein L19; ribosome associated inh	2e-13
2zjr_M	166	50S ribosomal protein L19; ribosome, large ribosom	9e-12

>3bbo_R Ribosomal protein L19; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} Length = 233

 Score =  130 bits (328), Expect = 4e-38
 Identities = 96/210 (45%), Positives = 123/210 (58%), Gaps = 21/210 (10%)

Query: 1   MGSQVLPQALHWIPRSSTQCIPSKRLGFSTVLSRGPFVSHGVS---------VSAKPIGW 51
           M S+VLPQAL  IP + +   P  +      +      S   +          S+     
Sbjct: 1   MASKVLPQALLVIPSNHSLQCPPLKKQLGFPIDSNRRFSLSSNCRSNLMVSRASSNLFSS 60

Query: 52  NLGFFVNAQVKDSFVVRAEANEEAEANESIEEEQNEAVQAQGDVVVAVEAESEDKVEEEE 111
           N     +   ++SFVVR+EA + ++A         E                 +   E E
Sbjct: 61  NFSSIFSFPARNSFVVRSEAEDSSDAPAESVAVVAEE------------ELPVESEAEAE 108

Query: 112 VKAPRKPRVKLGDIMGILNKRAVEASESERPIPDIRTGDVVEIKLEVPENRRRLSIYKGI 171
            + PR+ RVKLGDIMGILNK+AV A+E  RP+P IRTGD+V+I+LEVPEN+RRLS+YKGI
Sbjct: 109 ERPPRQQRVKLGDIMGILNKKAVHAAEELRPVPGIRTGDIVQIRLEVPENKRRLSVYKGI 168

Query: 172 VMSRQNAGIHTTIRIRRIIAGIGVEIVFPL 201
           V+SRQNAGIHTTIRIRRIIAG+GVEIVFPL
Sbjct: 169 VISRQNAGIHTTIRIRRIIAGVGVEIVFPL 198

>2ftc_K 39S ribosomal protein L19, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} Length = 98

 Score = 75.0 bits (185), Expect = 4e-18
 Identities = 19/59 (32%), Positives = 30/59 (50%)

Query: 143 IPDIRTGDVVEIKLEVPENRRRLSIYKGIVMSRQNAGIHTTIRIRRIIAGIGVEIVFPL 201
           IP+   G ++ +    P    ++S + GI + R   G+  T  +R +I G GVEI F L
Sbjct: 1   IPEFYVGSILRVTTADPYASGKISQFLGICIQRSGRGLGATFILRNVIEGQGVEICFEL 59

>3r8s_P 50S ribosomal protein L19; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_N 1p86_N 2awb_P 2gya_N 2gyc_N 2aw4_P 2i2v_P 2j28_P 2i2t_P* 2qao_P* 2qba_P* 2qbc_P* 2qbe_P 2qbg_P 2qbi_P* 2qbk_P* 2qov_P 2qox_P 2qoz_P* 2qp1_P* ... Length = 114

 Score = 65.3 bits (160), Expect = 2e-14
 Identities = 25/71 (35%), Positives = 46/71 (64%), Gaps = 1/71 (1%)

Query: 132 RAVEASESERPIPDIRTGDVVEIKLEVPE-NRRRLSIYKGIVMSRQNAGIHTTIRIRRII 190
           + +E  + ++ +P  R GD VE+K+ V E +++RL  ++G+V++ +N G+H+   +R+I 
Sbjct: 5   KQLEQEQMKQDVPSFRPGDTVEVKVWVVEGSKKRLQAFEGVVIAIRNRGLHSAFTVRKIS 64

Query: 191 AGIGVEIVFPL 201
            G GVE VF  
Sbjct: 65  NGEGVERVFQT 75

>3v2d_T 50S ribosomal protein L19; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_S 2hgj_S 2hgu_S 2j03_T 2jl6_T 2jl8_T 2v47_T 2v49_T 2wdi_T 2wdj_T 2wdl_T 2wdn_T 2wh2_T 2wh4_T 2wrj_T 2wrl_T 2wro_T 2wrr_T 2x9s_T 2x9u_T ... Length = 146

 Score = 63.6 bits (155), Expect = 2e-13
 Identities = 26/71 (36%), Positives = 43/71 (60%), Gaps = 1/71 (1%)

Query: 132 RAVEASESERPIPDIRTGDVVEIKLEVPE-NRRRLSIYKGIVMSRQNAGIHTTIRIRRII 190
           + VE+      +P+ R GD V +  +V E NR R+  ++GIV+  +  G +TT  +R++ 
Sbjct: 8   KLVESRYVRTDLPEFRPGDTVRVSYKVKEGNRTRIQDFEGIVIRIRRNGFNTTFTVRKVS 67

Query: 191 AGIGVEIVFPL 201
            G+GVE +FPL
Sbjct: 68  YGVGVERIFPL 78

>2zjr_M 50S ribosomal protein L19; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.34.5.6 PDB: 1nwx_N* 1nwy_N* 1sm1_N* 1xbp_N* 2zjp_M* 2zjq_M 1nkw_N 3cf5_M* 3dll_M* 3pio_M* 3pip_M* 1pnu_N 1pny_N 1vor_Q 1vou_Q 1vow_Q 1voy_Q 1vp0_Q Length = 166

 Score = 59.8 bits (145), Expect = 9e-12
 Identities = 24/66 (36%), Positives = 37/66 (56%), Gaps = 1/66 (1%)

Query: 137 SESERPIPDIRTGDVVEIKLEVPE-NRRRLSIYKGIVMSRQNAGIHTTIRIRRIIAGIGV 195
            +  R +PD R GD V +  +V E NR R   ++G+V++   +G   +  +R+I  G GV
Sbjct: 18  QDHTRQLPDFRPGDTVRVDTKVREGNRTRSQAFEGVVIAINGSGSRKSFTVRKISFGEGV 77

Query: 196 EIVFPL 201
           E VFP 
Sbjct: 78  ERVFPF 83

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	201
3bbo_R	233	Ribosomal protein L19; large ribosomal subunit, sp	100.0
3r8s_P	114	50S ribosomal protein L19; protein biosynthesis, R	99.96
3v2d_T	146	50S ribosomal protein L19; ribosome associated inh	99.96
2zjr_M	166	50S ribosomal protein L19; ribosome, large ribosom	99.95
2ftc_K	98	39S ribosomal protein L19, mitochondrial; mitochon	99.93

>3bbo_R Ribosomal protein L19; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}

Probab=100.00  E-value=3.2e-56  Score=384.04  Aligned_cols=188  Identities=57%  Similarity=0.847  Sum_probs=77.0

Q ss_pred             CCccccccccccccCC-CCCCCC-CcceeeeecccCC----CCcccceeeeecCCCccccceeec----cccceeEEeec
Q 028968            1 MGSQVLPQALHWIPRS-STQCIP-SKRLGFSTVLSRG----PFVSHGVSVSAKPIGWNLGFFVNA----QVKDSFVVRAE   70 (201)
Q Consensus         1 m~~~~lpqal~~~~r~-p~~~~~-~~~l~~ss~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~v~~a~   70 (201)
                      |||++|||||+++||+ |.|||| ||+||||+.+.|.    .+.++++++++. +|++|||+|++    .+|++||+|||
T Consensus         1 m~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~s~~~~~~~~~~~~~~-~s~~~~~~~~~~~~~~~~~~f~~r~~   79 (233)
T 3bbo_R            1 MASKVLPQALLVIPSNHSLQCPPLKKQLGFPIDSNRRFSLSSNCRSNLMVSRA-SSNLFSSNFSSIFSFPARNSFVVRSE   79 (233)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CcccccchhhhccccccccCCCCChhhcccccccccccccccccccceEeecc-ccccccccccchhccccccceeEeec
Confidence            9999999999999997 558876 8999999765332    222334555443 57788888877    48999999999


Q ss_pred             cchhhhcchhhHHHhHHHHhhccceeeeecccccccchhhhccCCCCCCCchhHHHHHHHHHHHHhhhcCCCCCCCCCCC
Q 028968           71 ANEEAEANESIEEEQNEAVQAQGDVVVAVEAESEDKVEEEEVKAPRKPRVKLGDIMGILNKRAVEASESERPIPDIRTGD  150 (201)
Q Consensus        71 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~e~~~~~~~e~~~~~p~r~~~~klg~lM~iLnke~IE~~q~kkdiPeFr~GD  150 (201)
                      +++.  ++++.+         +.+.++++|++....+|+++ ++|+++++||+++|++|++++|++.++++++|+|++||
T Consensus        80 ~~~~--~~~~~~---------~~~~~~e~~~~~~~~~~~~~-~~p~~~~~k~~~iM~~L~re~ie~~q~kkdiPeFr~GD  147 (233)
T 3bbo_R           80 AEDS--SDAPAE---------SVAVVAEEELPVESEAEAEE-RPPRQQRVKLGDIMGILNKKAVHAAEELRPVPGIRTGD  147 (233)
T ss_dssp             -----------------------------------------------------CCSSSCSTTHHHHTTCCSCCSSSCCCS
T ss_pred             cccC--CCCccc---------chhhcccccchhhhhhcccc-CCCCcchhHHHHHHHHHHHHHHHHHhhccCCCccCCCC
Confidence            9542  222211         12233334444333344444 99999999999999999999999999999999999999


Q ss_pred             EEEEEEEeecCCcccceEEEEEEEeecCCccceEEEEeeeCCeeeEEEeeC
Q 028968          151 VVEIKLEVPENRRRLSIYKGIVMSRQNAGIHTTIRIRRIIAGIGVEIVFPL  201 (201)
Q Consensus       151 tVrV~v~I~EnKeRiQ~FeGIVIarrn~Gi~sTFTVRKIs~GVGVER~FPL  201 (201)
                      ||+|+++|.|+|+|+|.|+|+||+++|+|+++|||||||++|+||||+|||
T Consensus       148 tV~V~vkI~E~KeRiQ~FeGVVIarr~~Gl~sTFTVRkis~GvGVER~FpL  198 (233)
T 3bbo_R          148 IVQIRLEVPENKRRLSVYKGIVISRQNAGIHTTIRIRRIIAGVGVEIVFPL  198 (233)
T ss_dssp             CCCCCCCBCCCSSCCSCCBCCCCCSCBCCCSSSCBCBCCCCCSTTTCCCCC
T ss_pred             EEEEEEEeccCcceecceEEEEEEEeCCCCCceEEEEEecCCceEEEEEec
Confidence            999999999999999999999999999999999999999999999999997

>3r8s_P 50S ribosomal protein L19; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_N 1p86_N 2awb_P 2gya_N 2gyc_N 2aw4_P 2i2v_P 2j28_P 2i2t_P* 2qao_P* 2qba_P* 2qbc_P* 2qbe_P 2qbg_P 2qbi_P* 2qbk_P* 2qov_P 2qox_P 2qoz_P* 2qp1_P* ...

Probab=99.96  E-value=2.1e-29  Score=198.19  Aligned_cols=70  Identities=36%  Similarity=0.709  Sum_probs=67.6

Q ss_pred             HHHHhhhcCCCCCCCCCCCEEEEEEEeec-CCcccceEEEEEEEeecCCccceEEEEeeeCCeeeEEEeeC
Q 028968          132 RAVEASESERPIPDIRTGDVVEIKLEVPE-NRRRLSIYKGIVMSRQNAGIHTTIRIRRIIAGIGVEIVFPL  201 (201)
Q Consensus       132 e~IE~~q~kkdiPeFr~GDtVrV~v~I~E-nKeRiQ~FeGIVIarrn~Gi~sTFTVRKIs~GVGVER~FPL  201 (201)
                      +++|+.|+++|+|+|++||||+|+++|.| +|+|+|.|+|+||+++|+|+++||||||+++|+||||+|||
T Consensus         5 ~~~e~~~~~~~iP~f~~GDtv~V~~~i~EG~keRiQ~F~GvvI~~~~~G~~~tftvRki~~gvGVEr~fpl   75 (114)
T 3r8s_P            5 KQLEQEQMKQDVPSFRPGDTVEVKVWVVEGSKKRLQAFEGVVIAIRNRGLHSAFTVRKISNGEGVERVFQT   75 (114)
T ss_dssp             HHHHGGGCCSCCCCCCTTCEEEEEEEEEETTEEEEEEEEEEEEEEECCGGGCEEEEEEEETTEEEEEEEET
T ss_pred             HHHHHHHhccCCCccCCCCEEEEEEEEecCCceeeeeEEEEEEEEECCCCCeEEEEEEecCCccEEEEEec
Confidence            46788889999999999999999999999 99999999999999999999999999999999999999997

>3v2d_T 50S ribosomal protein L19; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_S 2hgj_S 2hgu_S 2j03_T 2jl6_T 2jl8_T 2v47_T 2v49_T 2wdi_T 2wdj_T 2wdl_T 2wdn_T 2wh2_T 2wh4_T 2wrj_T 2wrl_T 2wro_T 2wrr_T 2x9s_T 2x9u_T ...

Probab=99.96  E-value=4.9e-29  Score=203.07  Aligned_cols=70  Identities=37%  Similarity=0.718  Sum_probs=67.9

Q ss_pred             HHHHhhhcCCCCCCCCCCCEEEEEEEeec-CCcccceEEEEEEEeecCCccceEEEEeeeCCeeeEEEeeC
Q 028968          132 RAVEASESERPIPDIRTGDVVEIKLEVPE-NRRRLSIYKGIVMSRQNAGIHTTIRIRRIIAGIGVEIVFPL  201 (201)
Q Consensus       132 e~IE~~q~kkdiPeFr~GDtVrV~v~I~E-nKeRiQ~FeGIVIarrn~Gi~sTFTVRKIs~GVGVER~FPL  201 (201)
                      +.+|+.++++|+|+|++||||+|+++|.| +|+|+|.|+|+||+++|+|+++||||||+++|+||||+|||
T Consensus         8 ~~ie~~~~~~diP~F~~GDtV~V~~~i~EG~keRiQ~FeGvVI~rr~~Gl~~tFtVRkis~gvGVEr~Fpl   78 (146)
T 3v2d_T            8 KLVESRYVRTDLPEFRPGDTVRVSYKVKEGNRTRIQDFEGIVIRIRRNGFNTTFTVRKVSYGVGVERIFPL   78 (146)
T ss_dssp             HHHHHTTCCCCCCCCCTTCEEEEEEEEECSSCEEEEEEEEEEEEEECCGGGCEEEEEEEETTEEEEEEEET
T ss_pred             HHHHHHHhhccCCCcCCCCEEEEEEEEccCCceeeeeEEEEEEEEECCCCCeEEEEEEecCCccEEEEEec
Confidence            57888899999999999999999999999 99999999999999999999999999999999999999997

>2zjr_M 50S ribosomal protein L19; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.34.5.6 PDB: 1nwx_N* 1nwy_N* 1sm1_N* 1xbp_N* 2zjp_M* 2zjq_M 1nkw_N 3cf5_M* 3dll_M* 3pio_M* 3pip_M* 1pnu_N 1pny_N 1vor_Q 1vou_Q 1vow_Q 1voy_Q 1vp0_Q

Probab=99.95  E-value=1.8e-29  Score=209.18  Aligned_cols=78  Identities=35%  Similarity=0.568  Sum_probs=68.1

Q ss_pred             hHHHHHHHHHHHHhhhcCCCCCCCCCCCEEEEEEEeec-CCcccceEEEEEEEeecCCccceEEEEeeeCCeeeEEEeeC
Q 028968          123 GDIMGILNKRAVEASESERPIPDIRTGDVVEIKLEVPE-NRRRLSIYKGIVMSRQNAGIHTTIRIRRIIAGIGVEIVFPL  201 (201)
Q Consensus       123 g~lM~iLnke~IE~~q~kkdiPeFr~GDtVrV~v~I~E-nKeRiQ~FeGIVIarrn~Gi~sTFTVRKIs~GVGVER~FPL  201 (201)
                      |+||+.|+++++.+. .++++|+|++||||+|+++|.| +|+|+|.|+|+||+++|+|+++|||||||++|+||||+|||
T Consensus         5 M~li~~le~eqlk~l-~~~diP~Fr~GDtV~V~vkI~EG~KeRiQ~FeGVVIarr~~Gl~sTFTVRkis~GvGVER~Fpl   83 (166)
T 2zjr_M            5 IKINRGELLRGIEQD-HTRQLPDFRPGDTVRVDTKVREGNRTRSQAFEGVVIAINGSGSRKSFTVRKISFGEGVERVFPF   83 (166)
T ss_dssp             CCCCHHHHHHHTTGG-GCCCCCCCSSSEEEEEECCTTSSSCCCCEEEECCEEECCCCGGGCEEEEEEEETTEEEEEEEET
T ss_pred             HHHHHHHHHHHHhhc-cccCCCCcCCCCEEEEEEEEecCCeeeecceEEEEEEEeCCCCCcEEEEEEecCCeeEEEEEec
Confidence            456666554444322 2389999999999999999999 99999999999999999999999999999999999999997

>2ftc_K 39S ribosomal protein L19, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus}

Probab=99.93  E-value=1.3e-26  Score=178.15  Aligned_cols=59  Identities=32%  Similarity=0.636  Sum_probs=58.1

Q ss_pred             CCCCCCCCEEEEEEEeecCCcccceEEEEEEEeecCCccceEEEEeeeCCeeeEEEeeC
Q 028968          143 IPDIRTGDVVEIKLEVPENRRRLSIYKGIVMSRQNAGIHTTIRIRRIIAGIGVEIVFPL  201 (201)
Q Consensus       143 iPeFr~GDtVrV~v~I~EnKeRiQ~FeGIVIarrn~Gi~sTFTVRKIs~GVGVER~FPL  201 (201)
                      +|+|++||||+|+++|.++|+|+|.|+|+||+++|+|+++||||||+++|+||||+|||
T Consensus         1 iP~f~~GDtv~V~~~i~g~k~R~q~F~GvvI~~~~~G~~~tftvRki~~gvGVEr~fpl   59 (98)
T 2ftc_K            1 IPEFYVGSILRVTTADPYASGKISQFLGICIQRSGRGLGATFILRNVIEGQGVEICFEL   59 (98)
T ss_pred             CCccCCCCEEEEEEEECCCceEeeeEEEEEEEEECCCCCcEEEEEEeccCceEEEEEec
Confidence            69999999999999999999999999999999999999999999999999999999997

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	201
d2gycn1	114	b.34.5.6 (N:1-114) Ribosomal protein L19 {Escheric	2e-15
d2zjrm1	108	b.34.5.6 (M:2-109) Ribosomal protein L19 {Deinococ	1e-11
d2j01t1	138	b.34.5.6 (T:1-138) Ribosomal protein L19 {Thermus	2e-11

>d2gycn1 b.34.5.6 (N:1-114) Ribosomal protein L19 {Escherichia coli [TaxId: 562]} Length = 114

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: Ribosomal protein L19
domain: Ribosomal protein L19
species: Escherichia coli [TaxId: 562]

 Score = 66.8 bits (163), Expect = 2e-15
 Identities = 25/71 (35%), Positives = 46/71 (64%), Gaps = 1/71 (1%)

Query: 132 RAVEASESERPIPDIRTGDVVEIKLEVPE-NRRRLSIYKGIVMSRQNAGIHTTIRIRRII 190
           + +E  + ++ +P  R GD VE+K+ V E +++RL  ++G+V++ +N G+H+   +R+I 
Sbjct: 5   KQLEQEQMKQDVPSFRPGDTVEVKVWVVEGSKKRLQAFEGVVIAIRNRGLHSAFTVRKIS 64

Query: 191 AGIGVEIVFPL 201
            G GVE VF  
Sbjct: 65  NGEGVERVFQT 75

>d2zjrm1 b.34.5.6 (M:2-109) Ribosomal protein L19 {Deinococcus radiodurans [TaxId: 1299]} Length = 108

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: Ribosomal protein L19
domain: Ribosomal protein L19
species: Deinococcus radiodurans [TaxId: 1299]

 Score = 57.1 bits (138), Expect = 1e-11
 Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 2/71 (2%)

Query: 132 RAVEASESERPIPDIRTGDVVEIKLEVPE-NRRRLSIYKGIVMSRQNAGIHTTIRIRRII 190
           R +E  +  R +PD R GD V +  +V E NR R   ++G+V++   +G   +  +R+I 
Sbjct: 13  RGIEQ-DHTRQLPDFRPGDTVRVDTKVREGNRTRSQAFEGVVIAINGSGSRKSFTVRKIS 71

Query: 191 AGIGVEIVFPL 201
            G GVE VFP 
Sbjct: 72  FGEGVERVFPF 82

>d2j01t1 b.34.5.6 (T:1-138) Ribosomal protein L19 {Thermus thermophilus [TaxId: 274]} Length = 138

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: Ribosomal protein L19
domain: Ribosomal protein L19
species: Thermus thermophilus [TaxId: 274]

 Score = 57.3 bits (138), Expect = 2e-11
 Identities = 26/71 (36%), Positives = 43/71 (60%), Gaps = 1/71 (1%)

Query: 132 RAVEASESERPIPDIRTGDVVEIKLEVPE-NRRRLSIYKGIVMSRQNAGIHTTIRIRRII 190
           + VE+      +P+ R GD V +  +V E NR R+  ++GIV+  +  G +TT  +R++ 
Sbjct: 8   KLVESRYVRTDLPEFRPGDTVRVSYKVKEGNRTRIQDFEGIVIRIRRNGFNTTFTVRKVS 67

Query: 191 AGIGVEIVFPL 201
            G+GVE +FPL
Sbjct: 68  YGVGVERIFPL 78

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	201
d2zjrm1	108	Ribosomal protein L19 {Deinococcus radiodurans [Ta	99.95
d2j01t1	138	Ribosomal protein L19 {Thermus thermophilus [TaxId	99.94
d2gycn1	114	Ribosomal protein L19 {Escherichia coli [TaxId: 56	99.93

>d2zjrm1 b.34.5.6 (M:2-109) Ribosomal protein L19 {Deinococcus radiodurans [TaxId: 1299]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: Ribosomal protein L19
domain: Ribosomal protein L19
species: Deinococcus radiodurans [TaxId: 1299]

Probab=99.95  E-value=3.1e-29  Score=193.63  Aligned_cols=69  Identities=36%  Similarity=0.707  Sum_probs=64.7

Q ss_pred             HHHHhhhcCCCCCCCCCCCEEEEEEEeec-CCcccceEEEEEEEeecCCccceEEEEeeeCCeeeEEEeeC
Q 028968          132 RAVEASESERPIPDIRTGDVVEIKLEVPE-NRRRLSIYKGIVMSRQNAGIHTTIRIRRIIAGIGVEIVFPL  201 (201)
Q Consensus       132 e~IE~~q~kkdiPeFr~GDtVrV~v~I~E-nKeRiQ~FeGIVIarrn~Gi~sTFTVRKIs~GVGVER~FPL  201 (201)
                      +.+|+.+++ ++|+|++||||+|+++|.| +|+|+|.|+|+||+++|+|+++||||||+++|+||||+|||
T Consensus        13 ~~ie~~~~k-~iP~f~~GDtV~V~~~i~Eg~k~RiQ~FeGvvI~~~~~g~~~tftvRki~~g~GVEr~fpl   82 (108)
T d2zjrm1          13 RGIEQDHTR-QLPDFRPGDTVRVDTKVREGNRTRSQAFEGVVIAINGSGSRKSFTVRKISFGEGVERVFPF   82 (108)
T ss_dssp             HHTTGGGCC-CCCCCSSSEEEEEECCTTSSSCCCCEEEECCEEECCCCGGGCEEEEEEEETTEEEEEEEET
T ss_pred             HHHHHHhCc-CCCCcCCCCEEEEEEEEcCCCccceEEEEEEEEEEeCCCccceEEEEEEecCccEEEEEEc
Confidence            446677665 8999999999999999999 99999999999999999999999999999999999999997

>d2j01t1 b.34.5.6 (T:1-138) Ribosomal protein L19 {Thermus thermophilus [TaxId: 274]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: Ribosomal protein L19
domain: Ribosomal protein L19
species: Thermus thermophilus [TaxId: 274]

Probab=99.94  E-value=3.6e-28  Score=194.49  Aligned_cols=70  Identities=37%  Similarity=0.718  Sum_probs=67.6

Q ss_pred             HHHHhhhcCCCCCCCCCCCEEEEEEEeec-CCcccceEEEEEEEeecCCccceEEEEeeeCCeeeEEEeeC
Q 028968          132 RAVEASESERPIPDIRTGDVVEIKLEVPE-NRRRLSIYKGIVMSRQNAGIHTTIRIRRIIAGIGVEIVFPL  201 (201)
Q Consensus       132 e~IE~~q~kkdiPeFr~GDtVrV~v~I~E-nKeRiQ~FeGIVIarrn~Gi~sTFTVRKIs~GVGVER~FPL  201 (201)
                      +.+|+.++++++|+|++||||+|+++|.| +|+|+|.|+|+||+++|+|+++||||||+++|+||||+|||
T Consensus         8 ~~iE~~~~k~~iP~fr~GDtV~V~~~i~Eg~k~RiQ~f~GvvI~~~~~g~~~tftvRki~~gvGVEr~fpl   78 (138)
T d2j01t1           8 KLVESRYVRTDLPEFRPGDTVRVSYKVKEGNRTRIQDFEGIVIRIRRNGFNTTFTVRKVSYGVGVERIFPL   78 (138)
T ss_dssp             HHHHCCCCCSCSCCCCSSCBBCCCCCCBTTBSCCCCCCBCEEEEEECCSSSCEEEEEEEETTEEEEEEECS
T ss_pred             HHHHHHhhcccCCCcCCCCEEEEEEEEcCCCceEEEEEEEEEEEEeCCCcceEEEEEEEecCccEEEEEec
Confidence            56788889999999999999999999999 99999999999999999999999999999999999999997

>d2gycn1 b.34.5.6 (N:1-114) Ribosomal protein L19 {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: Ribosomal protein L19
domain: Ribosomal protein L19
species: Escherichia coli [TaxId: 562]

Probab=99.93  E-value=8.8e-30  Score=198.30  Aligned_cols=69  Identities=36%  Similarity=0.706  Sum_probs=66.4

Q ss_pred             HHHhhhcCCCCCCCCCCCEEEEEEEeec-CCcccceEEEEEEEeecCCccceEEEEeeeCCeeeEEEeeC
Q 028968          133 AVEASESERPIPDIRTGDVVEIKLEVPE-NRRRLSIYKGIVMSRQNAGIHTTIRIRRIIAGIGVEIVFPL  201 (201)
Q Consensus       133 ~IE~~q~kkdiPeFr~GDtVrV~v~I~E-nKeRiQ~FeGIVIarrn~Gi~sTFTVRKIs~GVGVER~FPL  201 (201)
                      .+|+.|+++++|+|++||||+|+++|.| +|+|+|.|+|+||+++|+|+++|||||||++|+||||+|||
T Consensus         6 ~ie~~q~k~~iP~f~~GDtV~V~~~i~eg~K~RiQ~feGvvIa~k~~G~~~tftvRki~~GvGVEr~fpl   75 (114)
T d2gycn1           6 QLEQEQMKQDVPSFRPGDTVEVKVWVVEGSKKRLQAFEGVVIAIRNRGLHSAFTVRKISNGEGVERVFQT   75 (114)
T ss_dssp             SSSSSTTCCCCCCSCCCTTCCCCCCCCCCSSSSCCCCCCCCCCSCBCCCSSSCCCBCCCCCSSSCCCCCC
T ss_pred             HHHHHHhhccCCCcCCCCEEEEEEEEccCCcceeeEEEEEEEEEeCCCcceEEEEEEecCCccEEEEEEe
Confidence            4577788999999999999999999999 99999999999999999999999999999999999999997