Citrus Sinensis ID: 029143

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------20
Protein Sequence
MAITMKQMSLIVGTLGTLSFICGVIAENKKPASGTPIPLKGGVICKYPSDPSVVLGYLSAAFLVASIVAGYLSLFYPYKGRSVPHSVFFRSTSFTVFFNIAVFTGGLAATLLLWPTITEQIHLSRKVHSNPQAQCLTAKTGLLGGGAFVSLDSSLFWLVALMLADNAREDYFEELESSHKGVQLTGEYDEPDHLKGSP
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccEEEEcccccHHHHHHHHHHHHHHHHHHHHHEEEcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHcccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEcccccccHHccccc
Coil and Loop (DISEMBL)
MAITMKQMSLIVGTLGTLSFICGviaenkkpasgtpiplkggvickypsdpsvVLGYLSAAFLVASIVAGYLSlfypykgrsvphsvffrstsfTVFFNIAVFTGGLAATLLLWPtiteqihlsrkvhsnpqaqcltaktgllgggafvsLDSSLFWLVALMLADNAREDYFEELEsshkgvqltgeydepdhlkgsp
Flexible Loop (DISEMBL)
MAITMKQMSLIVGTLGTLSFICGVIAENKKPASGTPIPLKGGVICKYPSDPSVVLGYLSAAFLVASIVAGYLSLFYPYKGRSVPHSVFFRSTSFTVFFNIAVFTGGLAATLLLWPTITEQIHLSRKVHSNPQAQCLTAKTGLLGGGAFVSLDSSLFWLVALMLADNAREDYFEELEsshkgvqltgeydepdhlkgsp
Low Complexity Region (SEG)
MAITMKQMSLIVGTLGTLSFICGVIAENKKPASGTPIPLKGGVICKYPSDPSVVLGYLSAAFLVASIVAGYLSLFYPYKGRSVPHsvffrstsftvffNIAVFTGGLAATLLLWPTITEQIHLSRKVHSNPQAQCLTAKTgllgggAFVSLDSSLFWLVALMLADNAREDYFEELESSHKGVQLTGEYDEPDHLKGSP
Disordered region (IsUnstruct)
*******MSLIVGTLGTLSFICGVIAENKKPASGTPIPLKGGVICKYPSDPSVVLGYLSAAFLVASIVAGYLSLFYPYKGRSVPHSVFFRSTSFTVFFNIAVFTGGLAATLLLWPTITEQIHLSRKVHSNPQAQCLTAKTGLLGGGAFVSLDSSLFWLVALMLADNAREDYF**************************
Disordered Region (DISOPRED)
******QMSLIVGTLGTLSFICGVIAENKKPASG*PIPLKGGVICKYPSDPSVVLGYLSAAFLVASIVAGYLSLFYPY************STSFTVFFNIAVFTGGLAATLLLWPTITEQIHLSRKVHSNPQAQCLTAKTGLLGGGAFVSLDSSLFWLVALMLADNAREDYFEELESSHKGVQLTGEYD*********
Disordered Region (DISEMBL)
MAITMKQMSLIVGTLGTLSFICGVIAENKKPASGTPIPLKGGVICKYPSDPSVVLGYLSAAFLVASIVAGYLSLFYPYKGRSVPHSVFFRSTSFTVFFNIAVFTGGLAATLLLWPTITEQIHLSRKVHSNPQAQCLTAKTGLLGGGAFVSLDSSLFWLVALMLADNAREDYFEELESSHKGVQLTGEY**********
Disordered Region (DISPRO)
**I*MKQMSLIVGTLGTLSFICGVIAENKKPASGTPIPLKGGVICKYPSDPSVVLGYLSAAFLVASIVAGYLSLFYPYKGRSVPHSVFFRSTSFTVFFNIAVFTGGLAATLLLWPTITEQIHLSRKVHSNPQAQCLTAKTGLLGGGAFVSLDSSLFWLVALMLADNAREDYFEELESSHKGVQLTGEYDEP*H*****
Transmembrane Helix (TMHMM)
iiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAITMKQMSLIVGTLGTLSFICGVIAENKKPASGTPIPLKGGVICKYPSDPSVVLGYLSAAFLVASIVAGYLSLFYPYKGRSVPHSVFFRSTSFTVFFNIAVFTGGLAATLLLWPTITEQIHLSRKVHSNPQAQCLTAKTGLLGGGAFVSLDSSLFWLVALMLADNAREDYFEELESSHKGVQLTGEYDEPDHLKGSP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	198
255560207	193	conserved hypothetical protein [Ricinus	0.969	0.994	0.746	2e-78
224121264	202	predicted protein [Populus trichocarpa]	0.994	0.975	0.691	8e-75
297798858	195	hypothetical protein ARALYDRAFT_491631 [	0.904	0.917	0.754	1e-73
15235839	195	uncharacterized protein [Arabidopsis tha	0.893	0.907	0.762	3e-73
224142727	192	predicted protein [Populus trichocarpa]	0.954	0.984	0.689	1e-70
388517265	185	unknown [Medicago truncatula]	0.878	0.940	0.735	4e-69
147783101	275	hypothetical protein VITISV_039944 [Viti	0.989	0.712	0.713	2e-68
388507398	197	unknown [Lotus japonicus]	0.878	0.883	0.742	4e-68
225429884	201	PREDICTED: uncharacterized protein LOC10	0.989	0.975	0.703	5e-68
449437094	190	PREDICTED: uncharacterized protein LOC10	0.883	0.921	0.708	6e-68

>gi|255560207|ref|XP_002521121.1| conserved hypothetical protein [Ricinus communis] gi|223539690|gb|EEF41272.1| conserved hypothetical protein [Ricinus communis]

 Score =  296 bits (759), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 147/197 (74%), Positives = 167/197 (84%), Gaps = 5/197 (2%)

Query: 1   MAITMKQMSLIVGTLGTLSFICGVIAENKKPASGTPIPLKGGVICKYPSDPSVVLGYLSA 60
           MA+++ QMS+IVG LG LSFI GVIAENKKPA+GTPI  KG VICKYPSDP+V LGYLS 
Sbjct: 1   MAVSVTQMSIIVGILGALSFIFGVIAENKKPAAGTPITGKGVVICKYPSDPTVALGYLSF 60

Query: 61  AFLVASIVAGYLSLFYPYKGRSVPHSVFFRSTSFTVFFNIAVFTGGLAATLLLWPTITEQ 120
           AFLVAS VAGYLSLFYPYKG+SVP SV F+S SF+ FF+I++FTGGLAATLLLWPTITEQ
Sbjct: 61  AFLVASTVAGYLSLFYPYKGKSVPQSVLFQSASFSTFFSISLFTGGLAATLLLWPTITEQ 120

Query: 121 IHLSRKVHSNPQAQCLTAKTGLLGGGAFVSLDSSLFWLVALMLADNAREDYFEELESSHK 180
            HL+RKVH N +  C TAKTGLLGGGAFVSLDS+LFWLV+LMLADNAREDYFEE+E+  K
Sbjct: 121 FHLTRKVHHNLETTCPTAKTGLLGGGAFVSLDSALFWLVSLMLADNAREDYFEEVENECK 180

Query: 181 GVQLTGEYDEPDHLKGS 197
                 EY+ P HLKG+
Sbjct: 181 -----PEYNAPAHLKGT 192

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224121264|ref|XP_002330784.1| predicted protein [Populus trichocarpa] gi|222872586|gb|EEF09717.1| predicted protein [Populus trichocarpa]

 Score =  285 bits (729), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 139/201 (69%), Positives = 161/201 (80%), Gaps = 4/201 (1%)

Query: 1   MAITMKQMSLIVGTLGTLSFICGVIAENKKPASGTPIPLKGGVICKYPSDPSVVLGYLSA 60
           MA+TMKQM+L V  LG +SF+ G++AENKKPA+GTPIP KG VICKY SDP+V LG+LS 
Sbjct: 1   MAVTMKQMALAVTVLGLISFVFGIVAENKKPAAGTPIPGKGVVICKYSSDPTVPLGFLSV 60

Query: 61  AFLVASIVAGYLSLFYPYKGRSVPHSVFFRSTSFTVFFNIAVFTGGLAATLLLWPTITEQ 120
            FLVA+ V GYLSLFYPYKG+SVP+S  F+STSF++FFNIAVFT GLAA L+LWPTI E 
Sbjct: 61  GFLVATTVVGYLSLFYPYKGKSVPNSALFQSTSFSIFFNIAVFTAGLAAALILWPTIQEH 120

Query: 121 IHLSRKVHSNPQAQCLTAKTGLLGGGAFVSLDSSLFWLVALMLADNAREDYFEELESSHK 180
            HLS  VH +P  QC TAKTGLLGGGA VSLDS+LFWLVALMLADNAREDYF+E E   K
Sbjct: 121 SHLSHTVHHDPDYQCPTAKTGLLGGGALVSLDSALFWLVALMLADNAREDYFDETEKDVK 180

Query: 181 GVQ----LTGEYDEPDHLKGS 197
           G      L G++D P HLKG+
Sbjct: 181 GGHHDEVLEGDFDAPAHLKGT 201

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297798858|ref|XP_002867313.1| hypothetical protein ARALYDRAFT_491631 [Arabidopsis lyrata subsp. lyrata] gi|297313149|gb|EFH43572.1| hypothetical protein ARALYDRAFT_491631 [Arabidopsis lyrata subsp. lyrata]

 Score =  281 bits (719), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 135/179 (75%), Positives = 156/179 (87%)

Query: 1   MAITMKQMSLIVGTLGTLSFICGVIAENKKPASGTPIPLKGGVICKYPSDPSVVLGYLSA 60
           MA++MKQMSL+V  LG LSF+ GVIAENKKPASGTPI  KG VICKYPSDP+VVLGYLSA
Sbjct: 1   MAVSMKQMSLVVSALGVLSFVLGVIAENKKPASGTPISGKGVVICKYPSDPTVVLGYLSA 60

Query: 61  AFLVASIVAGYLSLFYPYKGRSVPHSVFFRSTSFTVFFNIAVFTGGLAATLLLWPTITEQ 120
           AFL+A  VAGY SLF  YKG+SVP+SV F+STSF+VFFNIA+ T GLA +LLLWPTITEQ
Sbjct: 61  AFLLACTVAGYKSLFISYKGKSVPNSVLFKSTSFSVFFNIALITSGLALSLLLWPTITEQ 120

Query: 121 IHLSRKVHSNPQAQCLTAKTGLLGGGAFVSLDSSLFWLVALMLADNAREDYFEELESSH 179
           +HL+R VH N ++ C TAKTGLLGGGAFVSLDS LFWLVALMLADNARED+F+E+E+ +
Sbjct: 121 LHLTRNVHRNLESSCPTAKTGLLGGGAFVSLDSCLFWLVALMLADNAREDHFDEVENRN 179

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15235839|ref|NP_194842.1| uncharacterized protein [Arabidopsis thaliana] gi|7270015|emb|CAB79831.1| putative protein [Arabidopsis thaliana] gi|28466863|gb|AAO44040.1| At4g31130 [Arabidopsis thaliana] gi|332660462|gb|AEE85862.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  280 bits (715), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 135/177 (76%), Positives = 153/177 (86%)

Query: 1   MAITMKQMSLIVGTLGTLSFICGVIAENKKPASGTPIPLKGGVICKYPSDPSVVLGYLSA 60
           MA++MKQMSL+V  LG LSF+ GVIAENKKPASGTPI  KG VICKYPSDP+V LGYLSA
Sbjct: 1   MAVSMKQMSLVVSALGVLSFVLGVIAENKKPASGTPISGKGVVICKYPSDPTVALGYLSA 60

Query: 61  AFLVASIVAGYLSLFYPYKGRSVPHSVFFRSTSFTVFFNIAVFTGGLAATLLLWPTITEQ 120
           AFL+A  VAGY SLF  YKG+SVP+SV F+STSF+VFFNIA+ T GLA +LLLWPTITEQ
Sbjct: 61  AFLLACTVAGYKSLFISYKGKSVPNSVLFKSTSFSVFFNIALITSGLALSLLLWPTITEQ 120

Query: 121 IHLSRKVHSNPQAQCLTAKTGLLGGGAFVSLDSSLFWLVALMLADNAREDYFEELES 177
           +HL+R VH N +  C TAKTGLLGGGAFVSLDS LFWLVALMLADNARED+F+E+ES
Sbjct: 121 LHLTRNVHRNLETSCPTAKTGLLGGGAFVSLDSCLFWLVALMLADNAREDHFDEVES 177

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224142727|ref|XP_002324706.1| predicted protein [Populus trichocarpa] gi|222866140|gb|EEF03271.1| predicted protein [Populus trichocarpa]

 Score =  271 bits (692), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 131/190 (68%), Positives = 153/190 (80%), Gaps = 1/190 (0%)

Query: 1   MAITMKQMSLIVGTLGTLSFICGVIAENKKPASGTPIPLKGGVICKYPSDPSVVLGYLSA 60
           MA+TMK M+L +  LG +SF+ GV+AENKKPA+GT I  KG VICKYPSDP+V LG+LS 
Sbjct: 1   MAVTMKHMALAITALGVISFLLGVVAENKKPAAGTAITGKGVVICKYPSDPTVALGFLSV 60

Query: 61  AFLVASIVAGYLSLFYPYKGRSVPHSVFFRSTSFTVFFNIAVFTGGLAATLLLWPTITEQ 120
            FL+A+ V GYLSLFYPYKG+ VP+S  F+STSFT+FFN+AVFT GLAA L+LWPTI E 
Sbjct: 61  GFLLAASVVGYLSLFYPYKGKRVPNSALFQSTSFTIFFNVAVFTAGLAAALILWPTIQEH 120

Query: 121 IHLSRKVHSNPQAQCLTAKTGLLGGGAFVSLDSSLFWLVALMLADNAREDYFEELESSHK 180
            HLSR VH +P  QC TAKTGLLGGGAFVSLDS+LFWLVALMLADNARED+F+E E   K
Sbjct: 121 SHLSRTVHHDPDYQCPTAKTGLLGGGAFVSLDSALFWLVALMLADNAREDFFDETEKDVK 180

Query: 181 GVQLTGEYDE 190
           G +L  E  E
Sbjct: 181 G-ELNSEVLE 189

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388517265|gb|AFK46694.1| unknown [Medicago truncatula]

 Score =  266 bits (679), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 128/174 (73%), Positives = 146/174 (83%)

Query: 1   MAITMKQMSLIVGTLGTLSFICGVIAENKKPASGTPIPLKGGVICKYPSDPSVVLGYLSA 60
           MA ++K M+L V  LG +SFI GVIAENKKPASGTPI +K GV CK+PSDP+V LGYLS 
Sbjct: 1   MAASIKHMALAVSLLGFVSFILGVIAENKKPASGTPIAVKDGVTCKFPSDPTVALGYLSV 60

Query: 61  AFLVASIVAGYLSLFYPYKGRSVPHSVFFRSTSFTVFFNIAVFTGGLAATLLLWPTITEQ 120
           AFL+AS V GYLSLFYPY+G+SVP  V F+ T+F VFFNIA+F+ GLAATLLLWP ITEQ
Sbjct: 61  AFLIASTVVGYLSLFYPYQGKSVPQGVLFKHTTFLVFFNIALFSSGLAATLLLWPVITEQ 120

Query: 121 IHLSRKVHSNPQAQCLTAKTGLLGGGAFVSLDSSLFWLVALMLADNAREDYFEE 174
           IHLSRKVH +    C TAKTGL+GGGAF+SLDS LFWLVALMLADNARED+FEE
Sbjct: 121 IHLSRKVHLDANYACPTAKTGLIGGGAFLSLDSCLFWLVALMLADNAREDHFEE 174

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147783101|emb|CAN64246.1| hypothetical protein VITISV_039944 [Vitis vinifera]

 Score =  263 bits (673), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 142/199 (71%), Positives = 157/199 (78%), Gaps = 3/199 (1%)

Query: 1   MAITMKQMSLIVGTLGTLSFICGVIAENKKPASGTPIPLKGGVICKYPSDPSVVLGYLSA 60
           MA T+KQMS+IV TLGTLSF+ GVIAENKKP SGT I  KG VICKY SDP+VVLGYLS 
Sbjct: 75  MAATIKQMSIIVATLGTLSFMFGVIAENKKPDSGTAIQGKGVVICKYSSDPTVVLGYLSV 134

Query: 61  AFLVASIVAGYLSLFYPYKGRSVPHSVFFRSTSFTVFFNIAVFTGGLAATLLLWPTITEQ 120
           AFLVAS VAGYLSLFYPYKGRS+P +  FRSTSF VFFNIA+   GLAA +LLWPTITEQ
Sbjct: 135 AFLVASTVAGYLSLFYPYKGRSIPQAALFRSTSFLVFFNIALGMAGLAAAMLLWPTITEQ 194

Query: 121 IHLSRKVHSNPQAQCLTAKTGLLGGGAFVSLDSSLFWLVALMLADNAREDYFEELESSHK 180
           +HL R VH N    C TAKTGLLGGGAF++LD+SLFWLV+LMLADN REDYFE +E   K
Sbjct: 195 LHLIRNVHHNLNTTCPTAKTGLLGGGAFIALDASLFWLVSLMLADNVREDYFETVEKDPK 254

Query: 181 GVQ---LTGEYDEPDHLKG 196
           G Q   LT EY     +KG
Sbjct: 255 GEQSEVLTNEYSSNVPVKG 273

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388507398|gb|AFK41765.1| unknown [Lotus japonicus]

 Score =  263 bits (671), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 130/175 (74%), Positives = 146/175 (83%), Gaps = 1/175 (0%)

Query: 1   MAITMKQMSLIVGTLGTLSFICGVIAENKKPASGTPIPLKGGVI-CKYPSDPSVVLGYLS 59
           MA+T+KQM+LIV   G LSFI GV+AENKKPASGTP+  K GV  CK+ SDP+VVLGYLS
Sbjct: 1   MALTIKQMALIVSLFGVLSFIFGVVAENKKPASGTPVTGKDGVTSCKFSSDPTVVLGYLS 60

Query: 60  AAFLVASIVAGYLSLFYPYKGRSVPHSVFFRSTSFTVFFNIAVFTGGLAATLLLWPTITE 119
            AFL+AS VAGY SLFYPYKG+SVP  VFF++TSF VFFNIAVF+ GLAA +LLWPTITE
Sbjct: 61  VAFLLASTVAGYRSLFYPYKGQSVPQGVFFKNTSFLVFFNIAVFSTGLAAAMLLWPTITE 120

Query: 120 QIHLSRKVHSNPQAQCLTAKTGLLGGGAFVSLDSSLFWLVALMLADNAREDYFEE 174
           QIHL+ KVH      C TAKTGLLGGGAF+SLDS LFWLVALMLADNAREDY +E
Sbjct: 121 QIHLTHKVHHELDYACPTAKTGLLGGGAFLSLDSCLFWLVALMLADNAREDYLDE 175

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225429884|ref|XP_002283541.1| PREDICTED: uncharacterized protein LOC100247379 [Vitis vinifera]

 Score =  262 bits (670), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 140/199 (70%), Positives = 156/199 (78%), Gaps = 3/199 (1%)

Query: 1   MAITMKQMSLIVGTLGTLSFICGVIAENKKPASGTPIPLKGGVICKYPSDPSVVLGYLSA 60
           MA T+KQMS+IV TLGTLSF+ GVIAENKKP SGT    +G VICKY SDP+VVLGYLS 
Sbjct: 1   MAATIKQMSIIVATLGTLSFMFGVIAENKKPDSGTATLREGVVICKYSSDPTVVLGYLSV 60

Query: 61  AFLVASIVAGYLSLFYPYKGRSVPHSVFFRSTSFTVFFNIAVFTGGLAATLLLWPTITEQ 120
           AFLVAS VAGYLSLFYPYKGRS+P +  FRSTSF VFFNIA+   GLAA +LLWPTITEQ
Sbjct: 61  AFLVASTVAGYLSLFYPYKGRSIPQAALFRSTSFLVFFNIALGMAGLAAAMLLWPTITEQ 120

Query: 121 IHLSRKVHSNPQAQCLTAKTGLLGGGAFVSLDSSLFWLVALMLADNAREDYFEELESSHK 180
           +HL R VH N    C TAKTGLLGGGAF++LD+SLFWLV+LMLADN REDYFE +E   K
Sbjct: 121 LHLIRNVHHNLNTTCPTAKTGLLGGGAFIALDASLFWLVSLMLADNVREDYFETVEKDPK 180

Query: 181 GVQ---LTGEYDEPDHLKG 196
           G Q   LT EY     +KG
Sbjct: 181 GEQSEVLTNEYSSNVPVKG 199

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449437094|ref|XP_004136327.1| PREDICTED: uncharacterized protein LOC101222453 isoform 1 [Cucumis sativus] gi|449437096|ref|XP_004136328.1| PREDICTED: uncharacterized protein LOC101222453 isoform 2 [Cucumis sativus] gi|449505493|ref|XP_004162487.1| PREDICTED: uncharacterized LOC101222453 isoform 1 [Cucumis sativus] gi|449505496|ref|XP_004162488.1| PREDICTED: uncharacterized LOC101222453 isoform 2 [Cucumis sativus]

 Score =  262 bits (669), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 124/175 (70%), Positives = 149/175 (85%)

Query: 1   MAITMKQMSLIVGTLGTLSFICGVIAENKKPASGTPIPLKGGVICKYPSDPSVVLGYLSA 60
           MA+++K MSL+VGTLG +SF+ GV+AENKKPASGTPIP KG V+CKY SDP+V LG+LS 
Sbjct: 1   MAVSVKLMSLLVGTLGVISFVFGVVAENKKPASGTPIPGKGHVVCKYQSDPTVALGFLSF 60

Query: 61  AFLVASIVAGYLSLFYPYKGRSVPHSVFFRSTSFTVFFNIAVFTGGLAATLLLWPTITEQ 120
            FL+AS  AGYLSLFYPY+G+SVP   FF+S++F  FFNIA+FT GLA T+L+WPT+TEQ
Sbjct: 61  MFLLASSCAGYLSLFYPYEGKSVPRGAFFKSSTFFAFFNIALFTTGLAITMLVWPTVTEQ 120

Query: 121 IHLSRKVHSNPQAQCLTAKTGLLGGGAFVSLDSSLFWLVALMLADNAREDYFEEL 175
           +HL+R VH N    C TAKTGLLGGGAF+SLDSSLFWLVALMLA NAREDYF+E+
Sbjct: 121 LHLTRNVHFNLDTACPTAKTGLLGGGAFLSLDSSLFWLVALMLAGNAREDYFDEI 175

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	198
TAIR|locus:2126281	195	AT4G31130 "AT4G31130" [Arabido	0.893	0.907	0.672	4e-58

TAIR|locus:2126281 AT4G31130 "AT4G31130" [Arabidopsis thaliana (taxid:3702)]

 Score = 597 (215.2 bits), Expect = 4.0e-58, P = 4.0e-58
 Identities = 119/177 (67%), Positives = 135/177 (76%)

Query:     1 MAITMKQMSLIVGTLGTLSFICGVIAENKKPASGTPIPLKGGVICKYPSDPSVVLGYLSA 60
             MA++MKQMSL+V  LG LSF+ GVIAENKKPASGTPI  KG VICKYPSDP+V LGYLSA
Sbjct:     1 MAVSMKQMSLVVSALGVLSFVLGVIAENKKPASGTPISGKGVVICKYPSDPTVALGYLSA 60

Query:    61 AFLVASIVAGYLSLFYPYKGRSVPHXXXXXXXXXXXXXNIAVFTGGLAATLLLWPTITEQ 120
             AFL+A  VAGY SLF  YKG+SVP+             NIA+ T GLA +LLLWPTITEQ
Sbjct:    61 AFLLACTVAGYKSLFISYKGKSVPNSVLFKSTSFSVFFNIALITSGLALSLLLWPTITEQ 120

Query:   121 IHLSRKVHSNPQAQCLTAKTXXXXXXAFVSLDSSLFWLVALMLADNAREDYFEELES 177
             +HL+R VH N +  C TAKT      AFVSLDS LFWLVALMLADNARED+F+E+ES
Sbjct:   121 LHLTRNVHRNLETSCPTAKTGLLGGGAFVSLDSCLFWLVALMLADNAREDHFDEVES 177


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.135   0.402    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      198       179   0.00089  109 3  11 22  0.42    32
                                                     31  0.39    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  587 (62 KB)
  Total size of DFA:  149 KB (2090 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  13.93u 0.09s 14.02t   Elapsed:  00:00:00
  Total cpu time:  13.93u 0.09s 14.02t   Elapsed:  00:00:00
  Start:  Fri May 10 07:27:48 2013   End:  Fri May 10 07:27:48 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	198
pfam06749	97	pfam06749, DUF1218, Protein of unknown function (D	5e-18

>gnl|CDD|219160 pfam06749, DUF1218, Protein of unknown function (DUF1218)

 Score = 75.0 bits (185), Expect = 5e-18
 Identities = 26/99 (26%), Positives = 40/99 (40%), Gaps = 2/99 (2%)

Query: 58  LSAAFLVASIVAGYLSLFYPYKGRSVPHSVFFRSTSFTVFFNIAVFTGGLAATLLLWPTI 117
            +A FL  + V G +       G+++P     +     V F ++     +A  LLL    
Sbjct: 1   AAAVFLAVAQVVGNVVGGCCCCGKALPPKSGRKRALAVVCFVLSWIAFVIAFALLLAGAA 60

Query: 118 TEQIHLSRKVHSNPQAQCLTAKTGLLGGGAFVSLDSSLF 156
               H    VH  P   C T K G+   GA +SL ++L 
Sbjct: 61  RNAYHTRYNVHFRP--SCYTLKKGVFAAGAVLSLLAALL 97

This family contains hypothetical plant proteins of unknown function. Family members contain a number of conserved cysteine residues. Length = 97

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	198
PF06749	97	DUF1218: Protein of unknown function (DUF1218); In	99.89
PTZ00201	192	amastin surface glycoprotein; Provisional	93.56
KOG4016	233	consensus Synaptic vesicle protein Synaptogyrin in	87.47
PF05478	806	Prominin: Prominin; InterPro: IPR008795 The promin	84.91
PF01284	144	MARVEL: Membrane-associating domain; InterPro: IPR	82.92

>PF06749 DUF1218: Protein of unknown function (DUF1218); InterPro: IPR009606 This family contains hypothetical plant proteins of unknown function

Probab=99.89  E-value=4.2e-23  Score=156.67  Aligned_cols=95  Identities=26%  Similarity=0.357  Sum_probs=76.8

Q ss_pred             HHHHHHHHH-HhhhhhcccccccCCCCCCCccccchhHHHHHHHHHHHHHHHHHHH-HHHhhhhhhhccccccCCCCCcC
Q 029143           58 LSAAFLVAS-IVAGYLSLFYPYKGRSVPHSVFFRSTSFTVFFNIAVFTGGLAATLL-LWPTITEQIHLSRKVHSNPQAQC  135 (198)
Q Consensus        58 ~A~lfLl~s-~~~G~~~~c~cC~gr~~p~~~~~~sr~~ai~~~i~sWitf~iA~~L-l~ga~~n~~h~~~~~~~~~~~~C  135 (198)
                      +|++||+++ +++...+.|.|| +|+.++++ .++|.++++++++||++|++++.+ ++|+++|++|++++.+.  +++|
T Consensus         1 ~A~~~L~~aqvi~~~~~gC~cc-~~~~~~~~-~~~r~~a~~~~v~SWi~f~ia~~~ll~ga~~n~~~~~~~~~~--~~~C   76 (97)
T PF06749_consen    1 AAAVFLLAAQVIANVAGGCLCC-GKRVSPKS-SRNRTLAVVFFVLSWIVFIIAEALLLAGASMNARHTKGNGWF--NPSC   76 (97)
T ss_pred             CHHHHHHHHHHHHHHHhcceEe-CCCCCCcc-cccchhhhhhHHHHHHHHHHHHHHHHHHHhcccccccccccc--CCcc
Confidence            378888888 444445568667 55554421 238999999999999999998665 77999999999997654  8899


Q ss_pred             ccccCcchhhHHHHHHHHHHH
Q 029143          136 LTAKTGLLGGGAFVSLDSSLF  156 (198)
Q Consensus       136 ~~~k~GvFagaA~lsL~t~l~  156 (198)
                      |++|+|+|++||+|+|+|++|
T Consensus        77 ~~~k~GvF~~~a~l~l~t~~f   97 (97)
T PF06749_consen   77 YTVKKGVFAGGAVLSLVTALF   97 (97)
T ss_pred             cccCCceeeHhHHHHHHHHhC
Confidence            999999999999999999875

Family members contain a number of conserved cysteine residues.

>PTZ00201 amastin surface glycoprotein; Provisional

Probab=93.56  E-value=0.25  Score=42.26  Aligned_cols=88  Identities=15%  Similarity=0.193  Sum_probs=56.3

Q ss_pred             chhhhHHHHHHHHHHHHhhhhhcccccccCCCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccCC
Q 029143           51 PSVVLGYLSAAFLVASIVAGYLSLFYPYKGRSVPHSVFFRSTSFTVFFNIAVFTGGLAATLLLWPTITEQIHLSRKVHSN  130 (198)
Q Consensus        51 pA~glGv~A~lfLl~s~~~G~~~~c~cC~gr~~p~~~~~~sr~~ai~~~i~sWitf~iA~~Ll~ga~~n~~h~~~~~~~~  130 (198)
                      .|=++.+.|++...++.+-|...+| ||+       .   .|.+..++.+++-++..|    -|+.+.-.||++      
T Consensus        76 ~aqAfaIISI~v~~aA~vlg~~~l~-cc~-------~---lr~vcl~Lnivg~vt~~V----vWa~mv~~Y~~~------  134 (192)
T PTZ00201         76 VAQALAVISILVYGAAFVLGLVLLY-GCT-------I---HRWVCLALNIVGAVTLGV----VWAAMVVTYYKD------  134 (192)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-ccc-------h---HHHHHHHHHHHHHHHHhe----eeeeEEEEEEcC------
Confidence            3557788888888888676776656 451       1   466667777766555543    444444334322      


Q ss_pred             CCCcCccccC-c-chhhHHHHHHHHHHHHHH
Q 029143          131 PQAQCLTAKT-G-LLGGGAFVSLDSSLFWLV  159 (198)
Q Consensus       131 ~~~~C~~~k~-G-vFagaA~lsL~t~l~~i~  159 (198)
                      ....|+..|+ + -|++|=+|-+.+-.+.++
T Consensus       135 ~~~~C~~~~~~~~~yGaGF~Llv~AW~L~ii  165 (192)
T PTZ00201        135 DGPLCPRVRDMGYRFGTGFALLVVAWILDIL  165 (192)
T ss_pred             CCccccccccCCCCccCcHHHHHHHHHHHHH
Confidence            2336987776 4 588888888888777777

>KOG4016 consensus Synaptic vesicle protein Synaptogyrin involved in regulation of Ca2+-dependent exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=87.47  E-value=19  Score=31.64  Aligned_cols=112  Identities=15%  Similarity=0.066  Sum_probs=57.5

Q ss_pred             ceeeeCCCCch-hhhHHHHHHHHHHH--HhhhhhcccccccCCCCCCCccccch-hHHHHHHHHHHH-HHHHHHHHHHHh
Q 029143           42 GVICKYPSDPS-VVLGYLSAAFLVAS--IVAGYLSLFYPYKGRSVPHSVFFRST-SFTVFFNIAVFT-GGLAATLLLWPT  116 (198)
Q Consensus        42 ~~~C~YpsdpA-~glGv~A~lfLl~s--~~~G~~~~c~cC~gr~~p~~~~~~sr-~~ai~~~i~sWi-tf~iA~~Ll~ga  116 (198)
                      ..+|.|.+|+. -.+|++.-+|.+++  +..+.=.    ... .+ ++...|+| .++-+.+-..|- .+++.+|.||  
T Consensus        56 ~~~Ciynrn~~ACsyg~avG~~Afla~~~flvlD~----~f~-qI-Ssv~~RkraVl~Dl~~SalwtflwfvGFc~l~--  127 (233)
T KOG4016|consen   56 EEFCIYNRNSNACSYGVAVGVLAFLACLAFLVLDV----YFP-QI-SSVKDRKRAVLADLGVSALWAFLWFVGFCFLA--  127 (233)
T ss_pred             ceEEEECCCCcchhHHHHHHHHHHHHHHHHHHHHh----hhh-hh-cccchhHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence            46899999863 33333332222222  2222111    111 11 12233455 466666777776 4666777787  


Q ss_pred             hhhhhhccccccCCCCCcCccccCcchhhHHHHHHHHHHHHHH-HHHHHhccccc
Q 029143          117 ITEQIHLSRKVHSNPQAQCLTAKTGLLGGGAFVSLDSSLFWLV-ALMLADNARED  170 (198)
Q Consensus       117 ~~n~~h~~~~~~~~~~~~C~~~k~GvFagaA~lsL~t~l~~i~-y~~l~~~ar~~  170 (198)
                        |+-  ...    .+.+ -.++.|=--+|=.++|++.+.|.. -++-+.+=|++
T Consensus       128 --nqw--qvs----~p~~-~~~~a~saraaIafsffSilsW~~~A~lA~qR~~~g  173 (233)
T KOG4016|consen  128 --NQW--QVS----KPKE-NPLGAGSARAAIAFSFFSILSWGGQAVLAFQRYRIG  173 (233)
T ss_pred             --HHh--hcc----CCCC-CCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence              432  221    1111 245666555666789999999998 34444444443

>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology

Probab=84.91  E-value=2.4  Score=42.95  Aligned_cols=25  Identities=4%  Similarity=0.020  Sum_probs=15.5

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHH
Q 029143           90 RSTSFTVFFNIAVFTGGLAATLLLW  114 (198)
Q Consensus        90 ~sr~~ai~~~i~sWitf~iA~~Ll~  114 (198)
                      |++.+++++++++.+..+..++.+.
T Consensus       138 ~R~~l~~~L~~~~~~il~g~i~aF~  162 (806)
T PF05478_consen  138 RRGCLGILLLLLTLIILFGVICAFV  162 (806)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4557888877777765554444444

Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane

>PF01284 MARVEL: Membrane-associating domain; InterPro: IPR021128 This entry represents the ~130-residue MARVEL (MAL and related proteins for vesicle trafficking and membrane link) domain

Probab=82.92  E-value=18  Score=27.35  Aligned_cols=25  Identities=16%  Similarity=0.259  Sum_probs=19.5

Q ss_pred             cccCcchhhHHHHHHHHHHHHHHHH
Q 029143          137 TAKTGLLGGGAFVSLDSSLFWLVAL  161 (198)
Q Consensus       137 ~~k~GvFagaA~lsL~t~l~~i~y~  161 (198)
                      ..+-+..-++++|++++.++++...
T Consensus       118 ~~~~~~~~Aa~~f~~~~~~l~~~s~  142 (144)
T PF01284_consen  118 CSRCGAWKAAAAFGFLNWLLFIVSA  142 (144)
T ss_pred             CCcchhHHHHHHHHHHHHHHHHHHH
Confidence            3445777889999999999988754

The MARVEL domain is a module with a four transmembrane-helix architecture that has been identified in proteins of the myelin and lymphocyte (MAL), physins, gyrins and occludin families. All described MARVEL domain-containing proteins are consistent with the M-shaped topology: four transmembrane-helix region architecture with cytoplasmic N- and C-terminal regions. Their function could be related to cholesterol-rich membrane apposition events in a variety of cellular processes, such as biogenesis of vesicular transport carriers or tight junction regulation [].

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00