Citrus Sinensis ID: 029158

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------20
Protein Sequence
MNKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIARFAKV
Secondary Structure (PSIPRED)
ccEEEEEEEcccccccccccccEEEEEccccccHHHHHHHHHccccEEEcccccccccEEEEEEEcccEEEEEccccccccccHHHHHHHHHHHHHHHHccccccEEEEEEEccccccHHHHHHHHHHHHccccEEEEEEccccccHHHHHHHHHHHHHHHHccccccccEEEEEccccccHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccEEEEEEcccHHHcccccccEEEEEccccccHHHHHHHHHccHHHccccccccccEEEEEEEEcccEEEEEccccccccccHHHHHHHHHHHHHHHHHHHHHcEEEEEEEccccccHHHHHHHHHHHHccccEEEEEEccccccccHHHHHHHHHHHHHccccccccEEEEEEccccccHHHHHHHHHHHHcHccc
Coil and Loop (DISEMBL)
MNKLEFFAAakvsssfpapdlpeiafagrsnvgksSMLNALTRQwgvvrtsdkpgltqtINFFKLGTKlclvdlpgygfaYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIdtkwgvkprdHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKAnnslvqpvmmvssksgagiRSLRTVLSKIARFAKV
Flexible Loop (DISEMBL)
MNKLEFFAAakvsssfpapdlpEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYvstrvslkrvcllidtkwgvkprdhELISlmersqtkyQVVLTKTDTVFPIDVARRAMQIEESlkannslvqpvmmvssksgagirslRTVLSKIARFAKV
Low Complexity Region (SEG)
MNKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIARFAKV
Disordered region (IsUnstruct)
*************************F*********SMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIE*****************************VL*********
Disordered Region (DISOPRED)
MNKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIARFAK*
Disordered Region (DISEMBL)
MNKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIARFAKV
Disordered Region (DISPRO)
MNKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIARFA**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIARFAKV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	198	2.2.26 [Sep-21-2011]
Q1GJX8	216	Probable GTP-binding prot	yes	no	0.949	0.870	0.436	8e-40
Q2GAU7	217	Probable GTP-binding prot	yes	no	0.949	0.866	0.410	5e-38
Q5FPX9	227	Probable GTP-binding prot	yes	no	0.964	0.841	0.413	6e-38
Q5LW13	217	Probable GTP-binding prot	yes	no	0.949	0.866	0.420	7e-38
Q3IYY4	217	Probable GTP-binding prot	yes	no	0.954	0.870	0.412	1e-37
Q16AA3	216	Probable GTP-binding prot	yes	no	0.949	0.870	0.425	1e-37
Q9RNL6	212	GTP-binding protein EngB	yes	no	0.939	0.877	0.393	6e-36
C3MF47	217	Probable GTP-binding prot	yes	no	0.919	0.838	0.430	1e-35
Q9ZG89	199	GTP-binding protein EngB	yes	no	0.954	0.949	0.391	2e-35
B8H1E7	199	Probable GTP-binding prot	yes	no	0.954	0.949	0.391	2e-35

>sp|Q1GJX8|ENGB_RUEST Probable GTP-binding protein EngB OS=Ruegeria sp. (strain TM1040) GN=engB PE=3 SV=1

 Score =  163 bits (412), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 82/188 (43%), Positives = 120/188 (63%)

Query: 5   EFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK 64
           EF       S  P  D  E+ FAGRSNVGKSS++NALT   G+ R S+ PG TQ INFF 
Sbjct: 28  EFLKGVVAMSGLPPADRIEVCFAGRSNVGKSSLINALTGTKGLARASNTPGRTQEINFFT 87

Query: 65  LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHEL 124
            G +L LVDLPGYG+A A   V + W+ L+K+Y+S R +L+R  +LIDT+ GVK  D E+
Sbjct: 88  QGPELYLVDLPGYGYANAPLAVVEKWQRLLKQYLSGRQTLRRAFVLIDTRHGVKKVDEEI 147

Query: 125 ISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRS 184
           + L++ S   +QVV+TK D V   D A+   Q+ ++L  + +    +++ SS+ G GI +
Sbjct: 148 MKLLDTSAVTFQVVMTKADKVKEKDRAKILDQVRDALSKHPAAYPEIVLTSSEKGDGIAT 207

Query: 185 LRTVLSKI 192
           LR++++ +
Sbjct: 208 LRSIIAHL 215

Necessary for normal cell division and for the maintenance of normal septation.
Silicibacter sp. (strain TM1040) (taxid: 292414)

>sp|Q2GAU7|ENGB_NOVAD Probable GTP-binding protein EngB OS=Novosphingobium aromaticivorans (strain DSM 12444) GN=engB PE=3 SV=1

 Score =  157 bits (397), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 78/190 (41%), Positives = 121/190 (63%), Gaps = 2/190 (1%)

Query: 2   NKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN 61
            ++EF  +A      P PD+PEIAFAGRSNVGKSS+LNALT +  + RTS  PG TQ +N
Sbjct: 22  GRVEFLKSAPALKFLPDPDVPEIAFAGRSNVGKSSLLNALTGRKSLARTSVTPGRTQELN 81

Query: 62  FFKLG--TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKP 119
           +F++G  T+L LVD+PGYGFA A  +V + W  LV++++  RV LKR  LLID++ GVKP
Sbjct: 82  YFEVGEPTRLRLVDMPGYGFAKAPPKVVETWRRLVRDFLRGRVVLKRTLLLIDSRHGVKP 141

Query: 120 RDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSG 179
            D +++ +++ +   Y++VLTK D +   ++ +   +   + +   +    +++ SS+  
Sbjct: 142 VDDDMMQMLDEAGVGYRIVLTKADKIKASELEKVTAETIAAARKRTAAYPEIIVTSSEKK 201

Query: 180 AGIRSLRTVL 189
            GI  LR  +
Sbjct: 202 MGIEELRAAV 211

Necessary for normal cell division and for the maintenance of normal septation.

Novosphingobium aromaticivorans (strain DSM 12444) (taxid: 279238)

>sp|Q5FPX9|ENGB_GLUOX Probable GTP-binding protein EngB OS=Gluconobacter oxydans (strain 621H) GN=engB PE=3 SV=1

 Score =  157 bits (396), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 81/196 (41%), Positives = 127/196 (64%), Gaps = 5/196 (2%)

Query: 2   NKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN 61
            + EFF  ++     P    PE+AFAGRSNVGKSS++NALT +  + R S +PG T+ +N
Sbjct: 23  GECEFFFGSQKIDQLPPVGRPEVAFAGRSNVGKSSIINALTGRRALARASSEPGRTKQLN 82

Query: 62  FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD 121
           FF L  +L LVD+PGYGFA A + VK+ W++++  Y+  R +L+RV LL+D +  +K  D
Sbjct: 83  FFNLADRLSLVDMPGYGFAKAAKSVKEDWQDMMFAYLRGRTTLERVILLLDARIELKASD 142

Query: 122 HELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQP-VMMVSSKSGA 180
            +++ L++R+   +Q+VLTK D V P  +A +  ++ E+L   ++   P ++  SS++G 
Sbjct: 143 KDVMELLDRAAVVFQIVLTKCDQVKPKALAAKIAEV-EALALKHAAAYPRIIATSSETGF 201

Query: 181 GIRSLRTVLSKIARFA 196
           GI  LR   ++IARFA
Sbjct: 202 GIEDLR---AEIARFA 214

Necessary for normal cell division and for the maintenance of normal septation.

Gluconobacter oxydans (strain 621H) (taxid: 290633)

>sp|Q5LW13|ENGB_RUEPO Probable GTP-binding protein EngB OS=Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) GN=engB PE=3 SV=1

 Score =  156 bits (395), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 79/188 (42%), Positives = 118/188 (62%)

Query: 5   EFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK 64
           EF       S  P  D  E+ FAGRSNVGKSS++NALT   G+ R S+ PG TQ INFF 
Sbjct: 29  EFVKGVVAMSGLPPADRVEVCFAGRSNVGKSSLINALTGTKGLARASNTPGRTQEINFFT 88

Query: 65  LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHEL 124
            G +L LVDLPGYG+A A  +V + W++L+K+Y+S R +L+R  +LID + GVK  D E+
Sbjct: 89  QGPELYLVDLPGYGYANAPLKVVEKWQKLLKQYLSGRQTLRRAFVLIDARHGVKAVDDEI 148

Query: 125 ISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRS 184
           + L++ S   +Q VLTK D V   +  +   Q+  +L  + +    +++ SS+ G GI +
Sbjct: 149 MKLLDTSAVTFQCVLTKADKVKAAERDKVLAQVRAALAKHPAAYPEIVLTSSEKGDGIAT 208

Query: 185 LRTVLSKI 192
           LR++++ +
Sbjct: 209 LRSIIAHL 216

Necessary for normal cell division and for the maintenance of normal septation.

Silicibacter pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) (taxid: 246200)

>sp|Q3IYY4|ENGB_RHOS4 Probable GTP-binding protein EngB OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=engB PE=3 SV=1

 Score =  156 bits (394), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 78/189 (41%), Positives = 118/189 (62%)

Query: 5   EFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK 64
           +F        + P  D  E+ FAGRSNVGKSS++NALT +  + R S+ PG TQ IN+F 
Sbjct: 29  DFVKGVTTMEALPPADRIEVCFAGRSNVGKSSLINALTGRKALARASNTPGRTQEINYFA 88

Query: 65  LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHEL 124
           LG    LVDLPGYG+A A + +   W+ L+K Y++ R +L+R  +LIDT+ GVK  D E+
Sbjct: 89  LGPSRYLVDLPGYGYAEAPKPIVQRWQRLLKGYLAGRQTLRRAFVLIDTRHGVKSVDEEI 148

Query: 125 ISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRS 184
           ++L++RS   +QVV+TK D V   +      Q+  +LK + +    ++M SS+ G GI +
Sbjct: 149 LTLLDRSAVTFQVVMTKADKVSQAEREAVLDQVRGALKKHPAAYPELVMTSSEKGMGIET 208

Query: 185 LRTVLSKIA 193
           LRT+++ + 
Sbjct: 209 LRTIVATLG 217

Necessary for normal cell division and for the maintenance of normal septation.

Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) (taxid: 272943)

>sp|Q16AA3|ENGB_ROSDO Probable GTP-binding protein EngB OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=engB PE=3 SV=1

 Score =  155 bits (393), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 80/188 (42%), Positives = 118/188 (62%)

Query: 5   EFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK 64
           EF       S  P PD  E+ FAGRSNVGKSS++NALT + G+ R S+ PG TQ INFF 
Sbjct: 28  EFVKGVVAMSGLPDPDRLEVCFAGRSNVGKSSLINALTGRKGLARASNTPGRTQEINFFT 87

Query: 65  LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHEL 124
            G    LVDLPGYG+A A   V + W+ L+K+Y+S R +L+R  +LID + GVK  D E+
Sbjct: 88  AGESHYLVDLPGYGYANAPVPVVEKWQRLLKQYLSGRQTLRRAFVLIDARHGVKKVDEEI 147

Query: 125 ISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRS 184
           +SL++ +   +QVVLTK D V   +  +   Q+  +L  + +    +++ SS+ G GI +
Sbjct: 148 LSLLDSAAVTFQVVLTKADKVKEKEREKVLDQVRTALSKHPAAFPELVITSSEKGWGIPT 207

Query: 185 LRTVLSKI 192
           LR++++ +
Sbjct: 208 LRSIITDL 215

Necessary for normal cell division and for the maintenance of normal septation.

Roseobacter denitrificans (strain ATCC 33942 / OCh 114) (taxid: 375451)

>sp|Q9RNL6|ENGB_ZYMMO GTP-binding protein EngB OS=Zymomonas mobilis subsp. mobilis (strain ATCC 31821 / ZM4 / CP4) GN=engB PE=3 SV=1

 Score =  150 bits (379), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 74/188 (39%), Positives = 116/188 (61%), Gaps = 2/188 (1%)

Query: 4   LEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF 63
           + F  +A      PAP  PE+AFAGRSNVGKSS++NALT +  + R S  PG TQ +NFF
Sbjct: 20  VNFLKSAPALEFLPAPTAPEVAFAGRSNVGKSSLINALTNRNSLARASTTPGRTQELNFF 79

Query: 64  KLGTKLC--LVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD 121
            +G  L   LVD+PGYGFA A ++V   W+ L+ +Y+  R  L+R  +LID++ G+K  D
Sbjct: 80  DVGEPLQMRLVDMPGYGFAKAPKDVVKRWKWLINDYLRGRAVLRRSLILIDSRHGIKDVD 139

Query: 122 HELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAG 181
            +L+ +++ +   Y+VVLTK+D +  +++ +    I E ++ + +    ++  SS+ G G
Sbjct: 140 RDLMKMLDDAAISYRVVLTKSDKIKAVELEKTVKAITEEMRKHPAAFPEIIATSSEKGTG 199

Query: 182 IRSLRTVL 189
           I  LR  +
Sbjct: 200 IAELRAAV 207

Necessary for normal cell division and for the maintenance of normal septation.

Zymomonas mobilis (strain ATCC 31821 / ZM4 / CP4) (taxid: 264203)

>sp|C3MF47|ENGB_RHISN Probable GTP-binding protein EngB OS=Rhizobium sp. (strain NGR234) GN=engB PE=3 SV=1

 Score =  149 bits (377), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 83/193 (43%), Positives = 118/193 (61%), Gaps = 11/193 (5%)

Query: 13  SSSFPAPDLP-EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLG----- 66
           S  F  P+ P EIAFAGRSNVGKSS++NAL    G+ RTS+ PG TQ +N+F        
Sbjct: 25  SMKFLPPEGPAEIAFAGRSNVGKSSLINALVGHKGLARTSNTPGRTQELNYFVPDGYSGE 84

Query: 67  ----TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDH 122
                 + LVD+PGYG+A A +E  DAW +LV +Y+  R +LKRV +LID + G+K  D 
Sbjct: 85  ADDLPPMALVDMPGYGYAQAPKEQVDAWTKLVFDYLRGRSTLKRVYVLIDARHGIKKNDE 144

Query: 123 ELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGI 182
           E+++L++++   YQ+VLTKTD +    V R   +  + +K   +    V+  SS+ GAGI
Sbjct: 145 EVLALLDKAAVSYQIVLTKTDKIKAAGVPRLIAETLDKIKKRPAAYPEVLSTSSEKGAGI 204

Query: 183 RSLR-TVLSKIAR 194
             LR T+   +AR
Sbjct: 205 EDLRITIEQAVAR 217

Necessary for normal cell division and for the maintenance of normal septation.

Rhizobium sp. (strain NGR234) (taxid: 394)

>sp|Q9ZG89|ENGB_CAUCR GTP-binding protein EngB OS=Caulobacter crescentus (strain ATCC 19089 / CB15) GN=engB PE=3 SV=2

 Score =  148 bits (374), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 74/189 (39%), Positives = 114/189 (60%)

Query: 4   LEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF 63
           + F   A    + P  DLPE+AFAGRSNVGKSS++N L  Q  + R S++PG T+ INFF
Sbjct: 7   VSFIMGAVRMDAMPPSDLPEVAFAGRSNVGKSSLINGLVNQKYLARASNEPGRTREINFF 66

Query: 64  KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHE 123
            L  K+ LVDLPGYGFA     + D +++L + Y+  R +LKRV +LID + G+K  D E
Sbjct: 67  LLAEKVRLVDLPGYGFARVSRSIADKFQDLGRAYLRGRANLKRVYVLIDARHGLKKVDLE 126

Query: 124 LISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIR 183
            +  ++ +   YQ+VLTK D + P +V +   + ++++    +    V+  SS+ G G+ 
Sbjct: 127 ALDALDVAAVSYQIVLTKADKIKPAEVDKVVAETQKAIAKRAAAFPRVLATSSEKGLGMP 186

Query: 184 SLRTVLSKI 192
            LR  + ++
Sbjct: 187 ELRAEIVRL 195

Necessary for normal cell division and for the maintenance of normal septation.

Caulobacter crescentus (strain ATCC 19089 / CB15) (taxid: 190650)

>sp|B8H1E7|ENGB_CAUCN Probable GTP-binding protein EngB OS=Caulobacter crescentus (strain NA1000 / CB15N) GN=engB PE=3 SV=1

 Score =  148 bits (374), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 74/189 (39%), Positives = 114/189 (60%)

Query: 4   LEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF 63
           + F   A    + P  DLPE+AFAGRSNVGKSS++N L  Q  + R S++PG T+ INFF
Sbjct: 7   VSFIMGAVRMDAMPPSDLPEVAFAGRSNVGKSSLINGLVNQKYLARASNEPGRTREINFF 66

Query: 64  KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHE 123
            L  K+ LVDLPGYGFA     + D +++L + Y+  R +LKRV +LID + G+K  D E
Sbjct: 67  LLAEKVRLVDLPGYGFARVSRSIADKFQDLGRAYLRGRANLKRVYVLIDARHGLKKVDLE 126

Query: 124 LISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIR 183
            +  ++ +   YQ+VLTK D + P +V +   + ++++    +    V+  SS+ G G+ 
Sbjct: 127 ALDALDVAAVSYQIVLTKADKIKPAEVDKVVAETQKAIAKRAAAFPRVLATSSEKGLGMP 186

Query: 184 SLRTVLSKI 192
            LR  + ++
Sbjct: 187 ELRAEIVRL 195

Necessary for normal cell division and for the maintenance of normal septation.

Caulobacter crescentus (strain NA1000 / CB15N) (taxid: 565050)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	198
255553339	489	GTP binding protein, putative [Ricinus c	0.994	0.402	0.857	1e-100
449439155	535	PREDICTED: uncharacterized protein LOC10	0.994	0.368	0.883	1e-99
224145468	305	predicted protein [Populus trichocarpa]	0.989	0.642	0.888	2e-97
356569473	540	PREDICTED: uncharacterized protein LOC10	0.989	0.362	0.867	3e-97
449516736	373	PREDICTED: probable GTP-binding protein	0.994	0.528	0.868	3e-97
356537641	535	PREDICTED: uncharacterized protein LOC10	0.989	0.366	0.867	3e-97
42573726	465	putative GTP-binding protein CGPA [Arabi	0.989	0.421	0.857	3e-96
297793371	467	predicted protein [Arabidopsis lyrata su	0.989	0.419	0.852	8e-96
343172533	343	putative GTP-binding protein, partial [S	0.989	0.571	0.867	9e-96
343172535	343	putative GTP-binding protein, partial [S	0.989	0.571	0.862	2e-95

>gi|255553339|ref|XP_002517711.1| GTP binding protein, putative [Ricinus communis] gi|223543109|gb|EEF44643.1| GTP binding protein, putative [Ricinus communis]

 Score =  368 bits (944), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 181/211 (85%), Positives = 188/211 (89%), Gaps = 14/211 (6%)

Query: 2   NKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN 61
           NKL FFAAAKVSSSFP PDLPEIAFAGRSNVGKSS+LNALTRQWGV RTSDKPGLTQTIN
Sbjct: 279 NKLTFFAAAKVSSSFPPPDLPEIAFAGRSNVGKSSLLNALTRQWGVARTSDKPGLTQTIN 338

Query: 62  FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD 121
           FF LG KLCLVDLPGYGFAYAKEEVKDAWE+LVKEYVSTRV LKRVCLLIDTKWG+KPRD
Sbjct: 339 FFSLGPKLCLVDLPGYGFAYAKEEVKDAWEDLVKEYVSTRVGLKRVCLLIDTKWGMKPRD 398

Query: 122 HELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPV---------- 171
           HELI+LMERSQTKYQ+VLTKTD VFPIDVARRAMQIEESLKAN S+VQPV          
Sbjct: 399 HELINLMERSQTKYQIVLTKTDVVFPIDVARRAMQIEESLKANKSIVQPVFFDVSQSNYV 458

Query: 172 ----MMVSSKSGAGIRSLRTVLSKIARFAKV 198
               MMVSSKSGAGIRSLRTVLSKIA FAK+
Sbjct: 459 VFTQMMVSSKSGAGIRSLRTVLSKIAWFAKL 489

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449439155|ref|XP_004137353.1| PREDICTED: uncharacterized protein LOC101223165 [Cucumis sativus]

 Score =  367 bits (942), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 174/197 (88%), Positives = 185/197 (93%)

Query: 2   NKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN 61
           NKL FFAAAKVSSSFP PD+PEIAFAGRSNVGKSS+LNALTRQWGVVRTSDKPGLTQTIN
Sbjct: 339 NKLTFFAAAKVSSSFPPPDVPEIAFAGRSNVGKSSLLNALTRQWGVVRTSDKPGLTQTIN 398

Query: 62  FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD 121
           FF LG+KL LVDLPGYGFAYAKEEVKDAWEELVKEYVSTRV L+RVCLL+DTKWG+KPRD
Sbjct: 399 FFNLGSKLSLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVGLRRVCLLVDTKWGMKPRD 458

Query: 122 HELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAG 181
            ELI LMERSQTKYQVVLTKTDTVFP+DVARRAMQIEE L  N S+VQP+MMVSSKSGAG
Sbjct: 459 QELIDLMERSQTKYQVVLTKTDTVFPMDVARRAMQIEERLTRNKSIVQPLMMVSSKSGAG 518

Query: 182 IRSLRTVLSKIARFAKV 198
           IRSLR+VL+ IARFAKV
Sbjct: 519 IRSLRSVLATIARFAKV 535

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224145468|ref|XP_002325653.1| predicted protein [Populus trichocarpa] gi|222862528|gb|EEF00035.1| predicted protein [Populus trichocarpa]

 Score =  360 bits (924), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 175/197 (88%), Positives = 185/197 (93%), Gaps = 1/197 (0%)

Query: 2   NKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN 61
           NKL FFAAAKVSSSFP P LPEIAFAGRSNVGKSS+LN+LTRQWGV RTSDKPGLTQTIN
Sbjct: 110 NKLTFFAAAKVSSSFPPPGLPEIAFAGRSNVGKSSLLNSLTRQWGVARTSDKPGLTQTIN 169

Query: 62  FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD 121
           FF+LG  +CLVDLPGYGFAYAKEEVKD+WEELVKEYVS RV+LKRVCLLIDTKWG+KPRD
Sbjct: 170 FFELGN-VCLVDLPGYGFAYAKEEVKDSWEELVKEYVSMRVNLKRVCLLIDTKWGMKPRD 228

Query: 122 HELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAG 181
            ELI LMER QTKYQVV+TKTD VFPIDVARRAMQIEESLKAN SLVQPVMMVSSKSGAG
Sbjct: 229 RELIDLMERYQTKYQVVMTKTDLVFPIDVARRAMQIEESLKANKSLVQPVMMVSSKSGAG 288

Query: 182 IRSLRTVLSKIARFAKV 198
           IRS+RTVLSKIARFAK+
Sbjct: 289 IRSVRTVLSKIARFAKL 305

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356569473|ref|XP_003552925.1| PREDICTED: uncharacterized protein LOC100799694 [Glycine max]

 Score =  359 bits (922), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 170/196 (86%), Positives = 183/196 (93%)

Query: 2   NKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN 61
           NKLEFFAAAKVSSSFP P+LPEIAFAGRSNVGKSS+LNALTRQWGVVRTSDKPGLTQTIN
Sbjct: 343 NKLEFFAAAKVSSSFPTPNLPEIAFAGRSNVGKSSLLNALTRQWGVVRTSDKPGLTQTIN 402

Query: 62  FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD 121
           FF+LGTK CLVDLPGYGFAYAKEEVK++WEELVKEYVSTRV LKRVCLLIDTKWG+KPRD
Sbjct: 403 FFQLGTKHCLVDLPGYGFAYAKEEVKESWEELVKEYVSTRVGLKRVCLLIDTKWGMKPRD 462

Query: 122 HELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAG 181
            ELI LMERS+TKYQ+VLTKTD VFPIDVARRAMQIEE+L  N S+V+PVMMVSS SGAG
Sbjct: 463 LELIELMERSKTKYQIVLTKTDMVFPIDVARRAMQIEENLFQNKSVVKPVMMVSSNSGAG 522

Query: 182 IRSLRTVLSKIARFAK 197
           IRSLRT L+ I RFA+
Sbjct: 523 IRSLRTALANITRFAR 538

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449516736|ref|XP_004165402.1| PREDICTED: probable GTP-binding protein EngB-like [Cucumis sativus]

 Score =  359 bits (922), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 171/197 (86%), Positives = 183/197 (92%)

Query: 2   NKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN 61
           NKL FFAAAKVSSSFP PD+PEIAFAGRSNVGKSS+LNALTRQWGVVRTSDKPGLTQ + 
Sbjct: 177 NKLTFFAAAKVSSSFPPPDVPEIAFAGRSNVGKSSLLNALTRQWGVVRTSDKPGLTQVLK 236

Query: 62  FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD 121
           FF LG+KL LVDLPGYGFAYAKEEVKDAWEELVKEYVSTRV L+RVCLL+DTKWG+KPRD
Sbjct: 237 FFNLGSKLSLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVGLRRVCLLVDTKWGMKPRD 296

Query: 122 HELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAG 181
            ELI LMERSQTKYQVVLTKTDTVFP+DVARRAMQIEE L  N S+VQP+MMVSSKSGAG
Sbjct: 297 QELIDLMERSQTKYQVVLTKTDTVFPMDVARRAMQIEERLTRNKSIVQPLMMVSSKSGAG 356

Query: 182 IRSLRTVLSKIARFAKV 198
           IRSLR+VL+ IARFAKV
Sbjct: 357 IRSLRSVLATIARFAKV 373

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356537641|ref|XP_003537334.1| PREDICTED: uncharacterized protein LOC100801850 [Glycine max]

 Score =  359 bits (921), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 170/196 (86%), Positives = 183/196 (93%)

Query: 2   NKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN 61
           NKL+FFAAAKVSSSFP P+LPEIAFAGRSNVGKSS+LNALTRQWGVVRTSDKPGLTQTIN
Sbjct: 338 NKLDFFAAAKVSSSFPPPNLPEIAFAGRSNVGKSSLLNALTRQWGVVRTSDKPGLTQTIN 397

Query: 62  FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD 121
           FF LGTK CLVDLPGYGFAYAKEEVK++WEELVKEYVSTRV L+RVCLLIDTKWG+KPRD
Sbjct: 398 FFNLGTKHCLVDLPGYGFAYAKEEVKESWEELVKEYVSTRVGLRRVCLLIDTKWGMKPRD 457

Query: 122 HELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAG 181
            ELI LMERS+TKYQ+VLTKTD VFPIDVARRAMQIEESL  N S+V+PVMMVSSKSGAG
Sbjct: 458 LELIELMERSKTKYQIVLTKTDVVFPIDVARRAMQIEESLFQNKSVVKPVMMVSSKSGAG 517

Query: 182 IRSLRTVLSKIARFAK 197
           IRSLRT L+ I RFA+
Sbjct: 518 IRSLRTALANITRFAR 533

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42573726|ref|NP_974959.1| putative GTP-binding protein CGPA [Arabidopsis thaliana] gi|222423373|dbj|BAH19659.1| AT5G58370 [Arabidopsis thaliana] gi|332009661|gb|AED97044.1| putative GTP-binding protein CGPA [Arabidopsis thaliana]

 Score =  356 bits (913), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 168/196 (85%), Positives = 183/196 (93%)

Query: 2   NKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN 61
           NKLEFFAAA VSSSFP PD+PEIAFAGRSNVGKSS+LNALTRQWGVVRTSDKPGLTQTIN
Sbjct: 269 NKLEFFAAANVSSSFPPPDVPEIAFAGRSNVGKSSLLNALTRQWGVVRTSDKPGLTQTIN 328

Query: 62  FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD 121
           FF LG K+ LVDLPGYGFA+AK+EVK+AWE+LVKEYVSTR SLKRVCLL+DTKWG+KPRD
Sbjct: 329 FFGLGPKVRLVDLPGYGFAFAKDEVKEAWEDLVKEYVSTRTSLKRVCLLVDTKWGMKPRD 388

Query: 122 HELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAG 181
            ELI+LMERS TKYQ+VLTKTD VFPIDVARRAMQIEE LKAN S+VQP+MMVSS+SGAG
Sbjct: 389 QELINLMERSNTKYQIVLTKTDVVFPIDVARRAMQIEEKLKANRSIVQPLMMVSSRSGAG 448

Query: 182 IRSLRTVLSKIARFAK 197
           I SLRT L+KIARFAK
Sbjct: 449 IGSLRTALAKIARFAK 464

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297793371|ref|XP_002864570.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297310405|gb|EFH40829.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  355 bits (910), Expect = 8e-96,   Method: Compositional matrix adjust.
 Identities = 167/196 (85%), Positives = 183/196 (93%)

Query: 2   NKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN 61
           NKLEFFAAA VSSSFP PD+PEIAFAGRSNVGKSS+LNALTRQWGVVRTSDKPGLTQTIN
Sbjct: 271 NKLEFFAAANVSSSFPPPDVPEIAFAGRSNVGKSSLLNALTRQWGVVRTSDKPGLTQTIN 330

Query: 62  FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD 121
           FF LG K+ LVDLPGYGFA+AK+EVK+AWE+LVKEYVSTR SLKRVCLL+DTKWG+KPRD
Sbjct: 331 FFGLGPKVRLVDLPGYGFAFAKDEVKEAWEDLVKEYVSTRTSLKRVCLLVDTKWGMKPRD 390

Query: 122 HELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAG 181
            ELI+LMERS TKYQ+VLTKTD VFP+DVARRAMQIEE LKAN S+VQP+MMVSS+SGAG
Sbjct: 391 QELINLMERSNTKYQIVLTKTDVVFPMDVARRAMQIEEKLKANRSIVQPLMMVSSRSGAG 450

Query: 182 IRSLRTVLSKIARFAK 197
           I SLRT L+KIARFAK
Sbjct: 451 IGSLRTALAKIARFAK 466

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|343172533|gb|AEL98970.1| putative GTP-binding protein, partial [Silene latifolia]

 Score =  354 bits (909), Expect = 9e-96,   Method: Compositional matrix adjust.
 Identities = 170/196 (86%), Positives = 182/196 (92%)

Query: 2   NKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN 61
           NKLEFFAAA+VSSSFP PDLPEIAFAGRSNVGKSS+LNALTRQWGVVRTSDKPG TQ+IN
Sbjct: 148 NKLEFFAAARVSSSFPPPDLPEIAFAGRSNVGKSSLLNALTRQWGVVRTSDKPGHTQSIN 207

Query: 62  FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD 121
           FF LG+KL LVDLPGYGFAYAK+EVK+AWEELVKEYVSTRV LKRVCLLIDTKWG+KPRD
Sbjct: 208 FFNLGSKLNLVDLPGYGFAYAKDEVKEAWEELVKEYVSTRVGLKRVCLLIDTKWGMKPRD 267

Query: 122 HELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAG 181
            ELI LMERSQTKYQVVLTKTD VFPIDVARRAMQIEE+LK + S+VQPVMMVSSKSGAG
Sbjct: 268 IELIHLMERSQTKYQVVLTKTDVVFPIDVARRAMQIEETLKEHKSIVQPVMMVSSKSGAG 327

Query: 182 IRSLRTVLSKIARFAK 197
           IR LRT L K+AR+ K
Sbjct: 328 IRCLRTALVKMARYLK 343

Source: Silene latifolia

Species: Silene latifolia

Genus: Silene

Family: Caryophyllaceae

Order: Caryophyllales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|343172535|gb|AEL98971.1| putative GTP-binding protein, partial [Silene latifolia]

 Score =  353 bits (907), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 169/196 (86%), Positives = 182/196 (92%)

Query: 2   NKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN 61
           NKLEFFAAA+VSSSFP PDLPEIAFAGRSNVGKSS+LNALTRQWGVVRTSDKPG TQ+IN
Sbjct: 148 NKLEFFAAARVSSSFPPPDLPEIAFAGRSNVGKSSLLNALTRQWGVVRTSDKPGHTQSIN 207

Query: 62  FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD 121
           FF LG+KL LVDLPGYGFAYAK+EVK+AWEELVKEY+STRV LKRVCLLIDTKWG+KPRD
Sbjct: 208 FFNLGSKLNLVDLPGYGFAYAKDEVKEAWEELVKEYLSTRVGLKRVCLLIDTKWGMKPRD 267

Query: 122 HELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAG 181
            ELI LMERSQTKYQVVLTKTD VFPIDVARRAMQIEE+LK + S+VQPVMMVSSKSGAG
Sbjct: 268 IELIHLMERSQTKYQVVLTKTDVVFPIDVARRAMQIEETLKEHKSIVQPVMMVSSKSGAG 327

Query: 182 IRSLRTVLSKIARFAK 197
           IR LRT L K+AR+ K
Sbjct: 328 IRCLRTALVKMARYLK 343

Source: Silene latifolia

Species: Silene latifolia

Genus: Silene

Family: Caryophyllaceae

Order: Caryophyllales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	198
TAIR|locus:2161243	465	AT5G58370 [Arabidopsis thalian	0.989	0.421	0.857	1.6e-86
DICTYBASE|DDB_G0348940	743	DDB_G0348940 [Dictyostelium di	0.944	0.251	0.428	1.1e-36
UNIPROTKB|Q5LW13	217	engB "Probable GTP-binding pro	0.949	0.866	0.420	1.5e-35
TIGR_CMR|SPO_0530	217	SPO_0530 "GTP-binding protein"	0.949	0.866	0.420	1.5e-35
UNIPROTKB|Q2GKS7	193	engB "Probable GTP-binding pro	0.939	0.963	0.397	2.9e-32
TIGR_CMR|APH_0421	193	APH_0421 "putative GTP-binding	0.939	0.963	0.397	2.9e-32
GENEDB_PFALCIPARUM|PF14_0400	1000	PF14_0400 "hypothetical protei	0.954	0.189	0.371	2.3e-29
UNIPROTKB|Q8IL49	1000	PF14_0400 "GTP binding protein	0.954	0.189	0.371	2.3e-29
DICTYBASE|DDB_G0268824	432	DDB_G0268824 [Dictyostelium di	0.904	0.414	0.344	9.4e-27
UNIPROTKB|Q748I9	206	engB "Probable GTP-binding pro	0.792	0.762	0.414	1.4e-25

TAIR|locus:2161243 AT5G58370 [Arabidopsis thaliana (taxid:3702)]

 Score = 865 (309.6 bits), Expect = 1.6e-86, P = 1.6e-86
 Identities = 168/196 (85%), Positives = 183/196 (93%)

Query:     2 NKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN 61
             NKLEFFAAA VSSSFP PD+PEIAFAGRSNVGKSS+LNALTRQWGVVRTSDKPGLTQTIN
Sbjct:   269 NKLEFFAAANVSSSFPPPDVPEIAFAGRSNVGKSSLLNALTRQWGVVRTSDKPGLTQTIN 328

Query:    62 FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD 121
             FF LG K+ LVDLPGYGFA+AK+EVK+AWE+LVKEYVSTR SLKRVCLL+DTKWG+KPRD
Sbjct:   329 FFGLGPKVRLVDLPGYGFAFAKDEVKEAWEDLVKEYVSTRTSLKRVCLLVDTKWGMKPRD 388

Query:   122 HELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAG 181
              ELI+LMERS TKYQ+VLTKTD VFPIDVARRAMQIEE LKAN S+VQP+MMVSS+SGAG
Sbjct:   389 QELINLMERSNTKYQIVLTKTDVVFPIDVARRAMQIEEKLKANRSIVQPLMMVSSRSGAG 448

Query:   182 IRSLRTVLSKIARFAK 197
             I SLRT L+KIARFAK
Sbjct:   449 IGSLRTALAKIARFAK 464

GO:0000917 "barrier septum assembly" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0019243 "methylglyoxal catabolic process to D-lactate" evidence=RCA

DICTYBASE|DDB_G0348940 DDB_G0348940 [Dictyostelium discoideum (taxid:44689)]

 Score = 402 (146.6 bits), Expect = 1.1e-36, P = 1.1e-36
 Identities = 81/189 (42%), Positives = 125/189 (66%)

Query:     2 NKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN 61
             +K++F  AAK   SF    LPE+AF GRSNVGKSS++NALT++ G+ +TSDKPG TQ+IN
Sbjct:   256 SKMKFIGAAKNIDSFLPETLPEVAFIGRSNVGKSSLINALTQR-GLAKTSDKPGQTQSIN 314

Query:    62 FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD 121
             +F+LG+ L LVDLPGYGFA+AKE + + W ++   Y++ R  +  V +LID++ G+K  D
Sbjct:   315 WFELGSTLYLVDLPGYGFAFAKETLVEQWSDITIHYLTERKCISCVFILIDSRHGLKDSD 374

Query:   122 HELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSL-VQPVMMVSSKSGA 180
               L+  +++ + K  ++LTK D   P D+ +R     + ++ N      PV+ +SSK+ +
Sbjct:   375 RNLLLELDKKKIKTHIILTKADLTKPEDLVKRISITNQEIQTNYRYSTTPVLPISSKNLS 434

Query:   181 GIRSLRTVL 189
             GI  L  ++
Sbjct:   435 GISDLSKLI 443

GO:0005525 "GTP binding" evidence=IEA

GO:0000917 "barrier septum assembly" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|Q5LW13 engB "Probable GTP-binding protein EngB" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 384 (140.2 bits), Expect = 1.5e-35, P = 1.5e-35
 Identities = 79/188 (42%), Positives = 118/188 (62%)

Query:     5 EFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK 64
             EF       S  P  D  E+ FAGRSNVGKSS++NALT   G+ R S+ PG TQ INFF 
Sbjct:    29 EFVKGVVAMSGLPPADRVEVCFAGRSNVGKSSLINALTGTKGLARASNTPGRTQEINFFT 88

Query:    65 LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHEL 124
              G +L LVDLPGYG+A A  +V + W++L+K+Y+S R +L+R  +LID + GVK  D E+
Sbjct:    89 QGPELYLVDLPGYGYANAPLKVVEKWQKLLKQYLSGRQTLRRAFVLIDARHGVKAVDDEI 148

Query:   125 ISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRS 184
             + L++ S   +Q VLTK D V   +  +   Q+  +L  + +    +++ SS+ G GI +
Sbjct:   149 MKLLDTSAVTFQCVLTKADKVKAAERDKVLAQVRAALAKHPAAYPEIVLTSSEKGDGIAT 208

Query:   185 LRTVLSKI 192
             LR++++ +
Sbjct:   209 LRSIIAHL 216

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|SPO_0530 SPO_0530 "GTP-binding protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 384 (140.2 bits), Expect = 1.5e-35, P = 1.5e-35
 Identities = 79/188 (42%), Positives = 118/188 (62%)

Query:     5 EFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK 64
             EF       S  P  D  E+ FAGRSNVGKSS++NALT   G+ R S+ PG TQ INFF 
Sbjct:    29 EFVKGVVAMSGLPPADRVEVCFAGRSNVGKSSLINALTGTKGLARASNTPGRTQEINFFT 88

Query:    65 LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHEL 124
              G +L LVDLPGYG+A A  +V + W++L+K+Y+S R +L+R  +LID + GVK  D E+
Sbjct:    89 QGPELYLVDLPGYGYANAPLKVVEKWQKLLKQYLSGRQTLRRAFVLIDARHGVKAVDDEI 148

Query:   125 ISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRS 184
             + L++ S   +Q VLTK D V   +  +   Q+  +L  + +    +++ SS+ G GI +
Sbjct:   149 MKLLDTSAVTFQCVLTKADKVKAAERDKVLAQVRAALAKHPAAYPEIVLTSSEKGDGIAT 208

Query:   185 LRTVLSKI 192
             LR++++ +
Sbjct:   209 LRSIIAHL 216

GO:0005525 "GTP binding" evidence=ISS

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q2GKS7 engB "Probable GTP-binding protein EngB" [Anaplasma phagocytophilum HZ (taxid:212042)]

 Score = 353 (129.3 bits), Expect = 2.9e-32, P = 2.9e-32
 Identities = 74/186 (39%), Positives = 113/186 (60%)

Query:     6 FFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL 65
             F A  +   SFP   +PE+AFAGRSNVGKSS++NA+T      +TS  PG T+ INF+  
Sbjct:     6 FVAGVQDRKSFPDFGVPEVAFAGRSNVGKSSLINAITNNKKNAKTSSNPGSTRQINFYLN 65

Query:    66 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELI 125
                + LVDLPGYG++ A +E    + ++++ Y+ +R +L+R+ LLID++ G+K  D + +
Sbjct:    66 KGIVALVDLPGYGYSKASKEATRGYLDVMEHYLMSREALQRLVLLIDSRIGLKEIDRDFL 125

Query:   126 SLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSL 185
               +E     Y +VLTK D +    +      ++   +  N L+QP+M VSSKSG GIR L
Sbjct:   126 CWLEEHGIYYSIVLTKADKLSEQALGSMVSFVQNQAQGGNFLLQPIMWVSSKSGRGIREL 185

Query:   186 RTVLSK 191
                +S+
Sbjct:   186 AHEISR 191

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|APH_0421 APH_0421 "putative GTP-binding protein EngB" [Anaplasma phagocytophilum HZ (taxid:212042)]

 Score = 353 (129.3 bits), Expect = 2.9e-32, P = 2.9e-32
 Identities = 74/186 (39%), Positives = 113/186 (60%)

Query:     6 FFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL 65
             F A  +   SFP   +PE+AFAGRSNVGKSS++NA+T      +TS  PG T+ INF+  
Sbjct:     6 FVAGVQDRKSFPDFGVPEVAFAGRSNVGKSSLINAITNNKKNAKTSSNPGSTRQINFYLN 65

Query:    66 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELI 125
                + LVDLPGYG++ A +E    + ++++ Y+ +R +L+R+ LLID++ G+K  D + +
Sbjct:    66 KGIVALVDLPGYGYSKASKEATRGYLDVMEHYLMSREALQRLVLLIDSRIGLKEIDRDFL 125

Query:   126 SLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSL 185
               +E     Y +VLTK D +    +      ++   +  N L+QP+M VSSKSG GIR L
Sbjct:   126 CWLEEHGIYYSIVLTKADKLSEQALGSMVSFVQNQAQGGNFLLQPIMWVSSKSGRGIREL 185

Query:   186 RTVLSK 191
                +S+
Sbjct:   186 AHEISR 191

GO:0005525 "GTP binding" evidence=ISS

GO:0008150 "biological_process" evidence=ND

GENEDB_PFALCIPARUM|PF14_0400 PF14_0400 "hypothetical protein, conserved" [Plasmodium falciparum (taxid:5833)]

 Score = 337 (123.7 bits), Expect = 2.3e-29, P = 2.3e-29
 Identities = 71/191 (37%), Positives = 111/191 (58%)

Query:     3 KLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF 62
             ++  +  A   +  P P  PEIAF GRSN GKS+++N L  +    + S  PG T+ I+F
Sbjct:    95 RMVLYKTAIQVNELPLPKYPEIAFIGRSNCGKSTLINELCGRTNKAKVSKIPGCTKEIHF 154

Query:    63 FKLGTK--LCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPR 120
             +K+G    +CLVDLPGYG+A  KEE++  W E    Y+  R +LK+V +LID + G+K  
Sbjct:   155 YKIGKPCLMCLVDLPGYGYAECKEELRLQWNEFTLFYLKNRKNLKKVFVLIDCRVGLKTS 214

Query:   121 DHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGA 180
             D EL+   +R   KYQ+VL+K D +   D+A +   I + +    +L +P++ +SS    
Sbjct:   215 DKELLHFFDRYNIKYQIVLSKCDLLNTKDLAIKIQIINQDILPFKNLEKPLIPLSSIKNQ 274

Query:   181 GIRSLRTVLSK 191
              +  LR  ++K
Sbjct:   275 NLSELRNEIAK 285

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q8IL49 PF14_0400 "GTP binding protein, putative" [Plasmodium falciparum 3D7 (taxid:36329)]

 Score = 337 (123.7 bits), Expect = 2.3e-29, P = 2.3e-29
 Identities = 71/191 (37%), Positives = 111/191 (58%)

Query:     3 KLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF 62
             ++  +  A   +  P P  PEIAF GRSN GKS+++N L  +    + S  PG T+ I+F
Sbjct:    95 RMVLYKTAIQVNELPLPKYPEIAFIGRSNCGKSTLINELCGRTNKAKVSKIPGCTKEIHF 154

Query:    63 FKLGTK--LCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPR 120
             +K+G    +CLVDLPGYG+A  KEE++  W E    Y+  R +LK+V +LID + G+K  
Sbjct:   155 YKIGKPCLMCLVDLPGYGYAECKEELRLQWNEFTLFYLKNRKNLKKVFVLIDCRVGLKTS 214

Query:   121 DHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGA 180
             D EL+   +R   KYQ+VL+K D +   D+A +   I + +    +L +P++ +SS    
Sbjct:   215 DKELLHFFDRYNIKYQIVLSKCDLLNTKDLAIKIQIINQDILPFKNLEKPLIPLSSIKNQ 274

Query:   181 GIRSLRTVLSK 191
              +  LR  ++K
Sbjct:   275 NLSELRNEIAK 285

GO:0008150 "biological_process" evidence=ND

DICTYBASE|DDB_G0268824 DDB_G0268824 [Dictyostelium discoideum (taxid:44689)]

 Score = 301 (111.0 bits), Expect = 9.4e-27, P = 9.4e-27
 Identities = 62/180 (34%), Positives = 103/180 (57%)

Query:    13 SSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLV 72
             S  FP    P++AF G+SNVGKS++LN++ R+  +   S   G T+TINF+++  KL LV
Sbjct:   223 SVDFPKKHFPQVAFLGKSNVGKSTLLNSVLRR-DLAYVSKSAGCTKTINFYQIWEKLYLV 281

Query:    73 DLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQ 132
             DLPGYGFA   ++    W   + E++ T  +L +V LLID++  +   D E +SL+++ +
Sbjct:   282 DLPGYGFAKVSKKKSTVWGNAISEFLLTSPNLFKVFLLIDSRNKIHKNDIEAMSLLDQHK 341

Query:   133 TKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKI 192
               +Q+VLTK D   P  +      ++E ++     +  ++  SS    GI  +RT +  +
Sbjct:   342 VSFQIVLTKIDKTTPSMLRSLYGSLKEEIQKTTCCLPTIIQTSSVDSKGIDDIRTTILNV 401

GO:0005525 "GTP binding" evidence=IEA

GO:0000917 "barrier septum assembly" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|Q748I9 engB "Probable GTP-binding protein EngB" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 290 (107.1 bits), Expect = 1.4e-25, P = 1.4e-25
 Identities = 65/157 (41%), Positives = 88/157 (56%)

Query:     5 EFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK 64
             EF  +      +P  DL EIAF GRSNVGKSS++N L  +  +VRTS  PG TQ INFF+
Sbjct:     8 EFVTSGTRPEHYPPGDLLEIAFVGRSNVGKSSLINVLVNRKSLVRTSSTPGRTQLINFFR 67

Query:    65 LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHEL 124
             +   L LVDLPGYGFA    EVK  W  +V+ Y++ R  L  V L++D +      D  +
Sbjct:    68 VNGSLMLVDLPGYGFARVPPEVKRQWGPMVETYLAGRSCLACVVLIVDVRRTPAEEDRLM 127

Query:   125 ISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESL 161
             +  +        VV+TK D V   + A++A  I  +L
Sbjct:   128 LQWLRAYDIPVLVVITKCDKVSKNERAKQASLISRTL 164

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q1GN74	ENGB_SPHAL	No assigned EC number	0.4042	0.9393	0.8493	yes	no
Q0ASI7	ENGB_MARMM	No assigned EC number	0.44	0.8787	0.9109	yes	no
Q1QH69	ENGB_NITHX	No assigned EC number	0.3874	0.9444	0.8617	yes	no
Q07TY1	ENGB_RHOP5	No assigned EC number	0.3789	0.9494	0.8703	yes	no
Q4UNC2	ENGB_RICFE	No assigned EC number	0.3989	0.9242	0.8632	yes	no
B6JJN9	ENGB_OLICO	No assigned EC number	0.3807	0.9595	0.8597	yes	no
Q89BP9	ENGB_BRAJA	No assigned EC number	0.4210	0.9494	0.8663	yes	no
C3MF47	ENGB_RHISN	No assigned EC number	0.4300	0.9191	0.8387	yes	no
C3PMD9	ENGB_RICAE	No assigned EC number	0.3776	0.9242	0.8632	yes	no
A6U5K8	ENGB_SINMW	No assigned EC number	0.4224	0.8939	0.8156	yes	no
Q0C548	ENGB_HYPNA	No assigned EC number	0.4102	0.9696	0.8727	yes	no
Q5PAH3	ENGB_ANAMM	No assigned EC number	0.4020	0.9797	0.9463	yes	no
Q9RNL6	ENGB_ZYMMO	No assigned EC number	0.3936	0.9393	0.8773	yes	no
Q5FPX9	ENGB_GLUOX	No assigned EC number	0.4132	0.9646	0.8414	yes	no
Q1MM59	ENGB_RHIL3	No assigned EC number	0.3948	0.9343	0.8525	yes	no
Q3IYY4	ENGB_RHOS4	No assigned EC number	0.4126	0.9545	0.8709	yes	no
A9IXE1	ENGB_BART1	No assigned EC number	0.3989	0.8989	0.8317	yes	no
B9KIV1	ENGB_ANAMF	No assigned EC number	0.4020	0.9797	0.9463	yes	no
Q3SN20	ENGB_NITWN	No assigned EC number	0.3894	0.9494	0.8663	yes	no
Q1RH06	ENGB_RICBR	No assigned EC number	0.3865	0.9545	0.8915	yes	no
Q1GJX8	ENGB_RUEST	No assigned EC number	0.4361	0.9494	0.8703	yes	no
A8GM60	ENGB_RICAH	No assigned EC number	0.3968	0.9393	0.8773	yes	no
B3Q039	ENGB_RHIE6	No assigned EC number	0.3917	0.9292	0.8479	yes	no
Q28UR1	ENGB_JANSC	No assigned EC number	0.3882	0.9494	0.8623	yes	no
Q2GKS7	ENGB_ANAPZ	No assigned EC number	0.3978	0.9393	0.9637	yes	no
A1UTM1	ENGB_BARBK	No assigned EC number	0.4043	0.8787	0.8093	yes	no
Q6G2G5	ENGB_BARHE	No assigned EC number	0.3989	0.8989	0.8279	yes	no
B9JZK9	ENGB_AGRVS	No assigned EC number	0.4224	0.8939	0.8082	yes	no
B8H1E7	ENGB_CAUCN	No assigned EC number	0.3915	0.9545	0.9497	yes	no
Q16AA3	ENGB_ROSDO	No assigned EC number	0.4255	0.9494	0.8703	yes	no
Q6FZ15	ENGB_BARQU	No assigned EC number	0.3989	0.8989	0.8279	yes	no
Q2GAU7	ENGB_NOVAD	No assigned EC number	0.4105	0.9494	0.8663	yes	no
A8GQS1	ENGB_RICRS	No assigned EC number	0.3711	0.9545	0.8915	yes	no
Q0BU77	ENGB_GRABC	No assigned EC number	0.3957	0.9444	0.8385	yes	no
A8EXG4	ENGB_RICCK	No assigned EC number	0.3882	0.9242	0.8356	yes	no
Q9ZG89	ENGB_CAUCR	No assigned EC number	0.3915	0.9545	0.9497	yes	no
Q5LW13	ENGB_RUEPO	No assigned EC number	0.4202	0.9494	0.8663	yes	no
Q92SF6	ENGB_RHIME	No assigned EC number	0.4278	0.8939	0.8156	yes	no
A8GUK6	ENGB_RICB8	No assigned EC number	0.3865	0.9545	0.8915	yes	no
Q98D85	ENGB_RHILO	No assigned EC number	0.4316	0.8787	0.8207	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	198
PRK00454	196	PRK00454, engB, GTP-binding protein YsxC; Reviewed	2e-65
cd01876	170	cd01876, YihA_EngB, YihA (EngB) GTPase family	2e-65
TIGR03598	178	TIGR03598, GTPase_YsxC, ribosome biogenesis GTP-bi	7e-60
COG0218	200	COG0218, COG0218, Predicted GTPase [General functi	2e-58
pfam01926	117	pfam01926, MMR_HSR1, 50S ribosome-binding GTPase	6e-22
PRK04213	201	PRK04213, PRK04213, GTP-binding protein; Provision	4e-16
cd00882	161	cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s	5e-16
cd00880	161	cd00880, Era_like, E	7e-15
TIGR03918	391	TIGR03918, GTP_HydF, [FeFe] hydrogenase H-cluster	2e-12
cd04163	168	cd04163, Era, E	8e-12
cd04171	170	cd04171, SelB, SelB, the dedicated elongation fact	3e-11
cd11383	140	cd11383, YfjP, YfjP GTPase	6e-09
COG1161	322	COG1161, COG1161, Predicted GTPases [General funct	8e-09
cd00881	183	cd00881, GTP_translation_factor, GTP translation f	9e-09
PRK00089	292	PRK00089, era, GTPase Era; Reviewed	1e-08
cd01856	171	cd01856, YlqF, Circularly permuted YlqF GTPase	2e-08
COG1160	444	COG1160, COG1160, Predicted GTPases [General funct	2e-08
COG0486	454	COG0486, ThdF, Predicted GTPase [General function	2e-08
cd01895	174	cd01895, EngA2, EngA2 GTPase contains the second d	4e-08
cd01894	157	cd01894, EngA1, EngA1 GTPase contains the first do	9e-08
TIGR00231	162	TIGR00231, small_GTP, small GTP-binding protein do	1e-07
PRK05291	449	PRK05291, trmE, tRNA modification GTPase TrmE; Rev	1e-07
PRK00093	435	PRK00093, PRK00093, GTP-binding protein Der; Revie	1e-07
cd01857	140	cd01857, HSR1_MMR1, A circularly permuted subfamil	2e-07
TIGR03594	429	TIGR03594, GTPase_EngA, ribosome-associated GTPase	2e-07
COG1159	298	COG1159, Era, GTPase [General function prediction	5e-07
TIGR03594	429	TIGR03594, GTPase_EngA, ribosome-associated GTPase	7e-07
cd01855	191	cd01855, YqeH, Circularly permuted YqeH GTPase	2e-06
cd04164	159	cd04164, trmE, trmE is a tRNA modification GTPase	2e-06
pfam02421	190	pfam02421, FeoB_N, Ferrous iron transport protein	3e-06
TIGR00450	442	TIGR00450, mnmE_trmE_thdF, tRNA modification GTPas	4e-06
TIGR03597	360	TIGR03597, GTPase_YqeH, ribosome biogenesis GTPase	6e-06
cd01859	157	cd01859, MJ1464, An uncharacterized, circularly pe	6e-06
TIGR00475	581	TIGR00475, selB, selenocysteine-specific elongatio	6e-06
PRK00093	435	PRK00093, PRK00093, GTP-binding protein Der; Revie	1e-05
COG0370	653	COG0370, FeoB, Fe2+ transport system protein B [In	1e-05
COG3276	447	COG3276, SelB, Selenocysteine-specific translation	1e-05
TIGR03596	276	TIGR03596, GTPase_YlqF, ribosome biogenesis GTP-bi	4e-05
cd09912	180	cd09912, DLP_2, Dynamin-like protein including dyn	4e-05
cd01879	159	cd01879, FeoB, Ferrous iron transport protein B (F	8e-05
COG1160	444	COG1160, COG1160, Predicted GTPases [General funct	2e-04
cd01881	167	cd01881, Obg_like, Obg-like family of GTPases cons	2e-04
cd04178	171	cd04178, Nucleostemin_like, A circularly permuted	2e-04
cd01849	146	cd01849, YlqF_related_GTPase, Circularly permuted	4e-04
PRK09563	287	PRK09563, rbgA, GTPase YlqF; Reviewed	5e-04
pfam03193	161	pfam03193, DUF258, Protein of unknown function, DU	6e-04
PRK09518	712	PRK09518, PRK09518, bifunctional cytidylate kinase	7e-04
TIGR00436	270	TIGR00436, era, GTP-binding protein Era	9e-04
COG1162	301	COG1162, COG1162, Predicted GTPases [General funct	0.001
cd01858	157	cd01858, NGP_1, A novel nucleolar GTP-binding prot	0.002
pfam00009	184	pfam00009, GTP_EFTU, Elongation factor Tu GTP bind	0.002
TIGR01933	261	TIGR01933, hflK, HflK protein	0.004

>gnl|CDD|234770 PRK00454, engB, GTP-binding protein YsxC; Reviewed

 Score =  199 bits (509), Expect = 2e-65
 Identities = 79/193 (40%), Positives = 118/193 (61%), Gaps = 3/193 (1%)

Query: 1   MNKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI 60
           ++  EF  +A      P  D PEIAFAGRSNVGKSS++NALT +  + RTS  PG TQ I
Sbjct: 4   IHNAEFVTSAPKLEQLPPDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLI 63

Query: 61  NFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPR 120
           NFF++  KL LVDLPGYG+A   +E K+ W++L++EY+ TR +LK V LLID++  +K  
Sbjct: 64  NFFEVNDKLRLVDLPGYGYAKVSKEEKEKWQKLIEEYLRTRENLKGVVLLIDSRHPLKEL 123

Query: 121 DHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGA 180
           D ++I  ++       +VLTK D +   +  ++  ++ ++LK  +     V++ SS    
Sbjct: 124 DLQMIEWLKEYGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDD---EVILFSSLKKQ 180

Query: 181 GIRSLRTVLSKIA 193
           GI  LR  ++K  
Sbjct: 181 GIDELRAAIAKWL 193

Length = 196

>gnl|CDD|206665 cd01876, YihA_EngB, YihA (EngB) GTPase family

 Score =  198 bits (506), Expect = 2e-65
 Identities = 79/171 (46%), Positives = 112/171 (65%), Gaps = 1/171 (0%)

Query: 23  EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYA 82
           E+AFAGRSNVGKSS++NALT +  + RTS  PG TQ INFF +G K  LVDLPGYG+A  
Sbjct: 1   EVAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFNVGDKFRLVDLPGYGYAKV 60

Query: 83  KEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKT 142
            +EV++ W +L++EY+  R +LK V LLID + G  P D E++  +E     + +VLTK 
Sbjct: 61  SKEVREKWGKLIEEYLENRENLKGVVLLIDARHGPTPIDLEMLEFLEELGIPFLIVLTKA 120

Query: 143 DTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA 193
           D +   ++A+   +I+E L   N L  PV++ SSK G GI  LR ++++  
Sbjct: 121 DKLKKSELAKVLKKIKEELNLFNIL-PPVILFSSKKGTGIDELRALIAEWL 170

The YihA (EngB) subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target. Length = 170

>gnl|CDD|213835 TIGR03598, GTPase_YsxC, ribosome biogenesis GTP-binding protein YsxC/EngB

 Score =  184 bits (470), Expect = 7e-60
 Identities = 74/178 (41%), Positives = 107/178 (60%), Gaps = 2/178 (1%)

Query: 5   EFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK 64
           EF  +A      P  D PEIAFAGRSNVGKSS++NALT +  + RTS  PG TQ INFF+
Sbjct: 2   EFVKSAVKLKQLPPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFE 61

Query: 65  LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHEL 124
           +     LVDLPGYG+A   +E K+ W++L++EY+  R +LK V LL+D +  +K  D E+
Sbjct: 62  VNDGFRLVDLPGYGYAKVSKEEKEKWQKLIEEYLEKRENLKGVVLLMDIRHPLKELDLEM 121

Query: 125 ISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGI 182
           I  +        +VLTK D +   ++ ++  +I+++LK +      V + SS    GI
Sbjct: 122 IEWLRERGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADD--SVQLFSSLKKTGI 177

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes [Protein synthesis, Other]. Length = 178

>gnl|CDD|223296 COG0218, COG0218, Predicted GTPase [General function prediction only]

 Score =  181 bits (462), Expect = 2e-58
 Identities = 82/188 (43%), Positives = 114/188 (60%)

Query: 2   NKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN 61
           +K +F  +A     +P  DLPEIAFAGRSNVGKSS++NALT Q  + RTS  PG TQ IN
Sbjct: 5   HKAKFITSAPDIKQYPEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLIN 64

Query: 62  FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD 121
           FF++  +L LVDLPGYG+A   +EVK+ W++L++EY+  R +LK V LLID +   K  D
Sbjct: 65  FFEVDDELRLVDLPGYGYAKVPKEVKEKWKKLIEEYLEKRANLKGVVLLIDARHPPKDLD 124

Query: 122 HELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAG 181
            E+I  +        VVLTK D +   +  ++  ++ E LK      Q V++ SS    G
Sbjct: 125 REMIEFLLELGIPVIVVLTKADKLKKSERNKQLNKVAEELKKPPPDDQWVVLFSSLKKKG 184

Query: 182 IRSLRTVL 189
           I  L+  +
Sbjct: 185 IDELKAKI 192

Length = 200

>gnl|CDD|216791 pfam01926, MMR_HSR1, 50S ribosome-binding GTPase

 Score = 85.8 bits (213), Expect = 6e-22
 Identities = 35/122 (28%), Positives = 56/122 (45%), Gaps = 8/122 (6%)

Query: 23  EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQ--TINFFKLGTKLCLVDLPGYGFA 80
            +A  GR NVGKS+++NALT    V   SD PG T+   +    LG ++ LVD PG    
Sbjct: 1   RVALVGRPNVGKSTLINALTGA-KVAIVSDYPGTTRDPILGVLGLGRQIILVDTPGLI-- 57

Query: 81  YAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELIS-LMERSQTKYQVVL 139
             +   +    E    ++        + L++D   G+   D E++  L +  +    +VL
Sbjct: 58  --EGASEGKGVEGFNRFLEAIREADLILLVVDASEGLTEDDEEILEELEKLPKKPIILVL 115

Query: 140 TK 141
            K
Sbjct: 116 NK 117

The full-length GTPase protein is required for the complete activity of the protein of interacting with the 50S ribosome and binding of both adenine and guanine nucleotides, with a preference for guanine nucleotide. Length = 117

>gnl|CDD|179790 PRK04213, PRK04213, GTP-binding protein; Provisional

 Score = 72.6 bits (179), Expect = 4e-16
 Identities = 31/78 (39%), Positives = 49/78 (62%), Gaps = 4/78 (5%)

Query: 22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGF-A 80
          PEI F GRSNVGKS+++  LT +   VR   +PG+T+  N +  G  + L DLPG+GF +
Sbjct: 10 PEIVFVGRSNVGKSTLVRELTGKK--VRVGKRPGVTRKPNHYDWGDFI-LTDLPGFGFMS 66

Query: 81 YAKEEVKDAWEELVKEYV 98
             +EV++  ++ +  Y+
Sbjct: 67 GVPKEVQEKIKDEIVRYI 84

Length = 201

>gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases)

 Score = 71.7 bits (176), Expect = 5e-16
 Identities = 43/169 (25%), Positives = 67/169 (39%), Gaps = 20/169 (11%)

Query: 25  AFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGT-----KLCLVDLPGYGF 79
              GR  VGKSS+LNAL     V   SD PG T+  + +         KL LVD PG   
Sbjct: 1   VVVGRGGVGKSSLLNALLGGE-VGEVSDVPGTTRDPDVYVKELDKGKVKLVLVDTPGL-- 57

Query: 80  AYAKEEVKDAWEELVKEYVSTRVSLKRVCLLID-TKWGVKPR-DHELISLMERSQTKYQV 137
               +E      E +   +     L  + L++D T    +      ++  + +      +
Sbjct: 58  ----DEFGGLGREELARLLLRGADL--ILLVVDSTDRESEEDAKLLILRRLRKEGIPIIL 111

Query: 138 VLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLR 186
           V  K D +   +V     ++    +    L  PV  VS+K+G G+  L 
Sbjct: 112 VGNKIDLLEEREVE----ELLRLEELAKILGVPVFEVSAKTGEGVDELF 156

Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161

>gnl|CDD|206646 cd00880, Era_like, E

 Score = 68.4 bits (168), Expect = 7e-15
 Identities = 49/176 (27%), Positives = 74/176 (42%), Gaps = 22/176 (12%)

Query: 25  AFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN----FFKLGTKLCLVDLPGY--G 78
           A  GR NVGKSS+LNAL  Q  V   S  PG T+              + L+D PG    
Sbjct: 1   AIFGRPNVGKSSLLNALLGQN-VGIVSPIPGTTRDPVRKEWELLPLGPVVLIDTPGLDEE 59

Query: 79  FAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHEL-ISLMERSQTKYQV 137
               +E V++A +         R  L  V L++D+   + P + E  + L+        +
Sbjct: 60  GGLGRERVEEARQVA------DRADL--VLLVVDS--DLTPVEEEAKLGLLRERGKPVLL 109

Query: 138 VLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA 193
           VL K D V   +      + +  L        PV+ VS+  G GI  LR  ++++ 
Sbjct: 110 VLNKIDLVPESEEEELLRERKLEL----LPDLPVIAVSALPGEGIDELRKKIAELL 161

coli Ras-like protein (Era)-like GTPase. The Era (E. coli Ras-like protein)-like family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngB), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Length = 161

>gnl|CDD|234395 TIGR03918, GTP_HydF, [FeFe] hydrogenase H-cluster maturation GTPase HydF

 Score = 64.1 bits (157), Expect = 2e-12
 Identities = 49/180 (27%), Positives = 74/180 (41%), Gaps = 32/180 (17%)

Query: 24  IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT-----QTINFFKLGTKLCLVDLPGYG 78
           I   GR N GKSS++NALT Q  +   SD PG T     + +    LG  + L+D  G  
Sbjct: 9   IGIFGRRNAGKSSLINALTGQ-DIAIVSDVPGTTTDPVYKAMELLPLGPVV-LIDTAG-- 64

Query: 79  FAYAKEEVKDAWE--ELVKEYVSTRVSLKR---VCLLIDTKWGVKPRDHELISLMERSQT 133
                  + D  E  EL  E   TR  L +     L++D   G    + ELI  ++  + 
Sbjct: 65  -------LDDEGELGELRVE--KTREVLDKTDLALLVVDAGVGPGEYELELIEELKERKI 115

Query: 134 KYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA 193
            Y VV+ K D         +  +             P + VS+ +G GI  L+  + ++ 
Sbjct: 116 PYIVVINKIDLGEESAELEKLEKKFG---------LPPIFVSALTGEGIDELKEAIIELL 166

This model describes the family of the [Fe] hydrogenase maturation protein HypF as characterized in Chlamydomonas reinhardtii and found, in an operon with radical SAM proteins HydE and HydG, in numerous bacteria. It has GTPase activity, can bind an 4Fe-4S cluster, and is essential for hydrogenase activity [Protein fate, Protein modification and repair]. Length = 391

>gnl|CDD|206726 cd04163, Era, E

 Score = 60.6 bits (148), Expect = 8e-12
 Identities = 43/179 (24%), Positives = 75/179 (41%), Gaps = 25/179 (13%)

Query: 24  IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLG------TKLCLVDLPGY 77
           +A  GR NVGKS++LNAL  Q  +   S KP  T+       G       ++  VD PG 
Sbjct: 6   VAIIGRPNVGKSTLLNALVGQ-KISIVSPKPQTTRNRI---RGIYTDDDAQIIFVDTPGI 61

Query: 78  GFAYAKEEVKDAWEELVKEYVSTRVSLKR---VCLLIDTKWGVKPRDHELISLMERSQTK 134
              +  ++     E +VK   S   +LK    V  ++D    +   D  ++ L+++S+T 
Sbjct: 62  ---HKPKKKLG--ERMVKAAWS---ALKDVDLVLFVVDASEWIGEGDEFILELLKKSKTP 113

Query: 135 YQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA 193
             +VL K D V   +     ++  + L         +  +S+  G  +  L   + +  
Sbjct: 114 VILVLNKIDLVKDKEDLLPLLEKLKELHPF----AEIFPISALKGENVDELLEYIVEYL 168

coli Ras-like protein (Era) is a multifunctional GTPase. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA. Length = 168

>gnl|CDD|206734 cd04171, SelB, SelB, the dedicated elongation factor for delivery of selenocysteinyl-tRNA to the ribosome

 Score = 59.2 bits (144), Expect = 3e-11
 Identities = 48/178 (26%), Positives = 79/178 (44%), Gaps = 23/178 (12%)

Query: 24  IAFAGRSNVGKSSMLNALTRQWGVVRTSDKP-GLTQTINF----FKLGTKLCLVDLPGYG 78
           I  AG  + GK++++ ALT         +K  G+T  + F       G +L  +D+PG+ 
Sbjct: 2   IGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPDGKRLGFIDVPGH- 60

Query: 79  FAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKP--RDH-ELISLMERSQTKY 135
                       E+ VK  ++    +  V L++    G+ P  R+H E++ L+   +   
Sbjct: 61  ------------EKFVKNMLAGAGGIDAVLLVVAADEGIMPQTREHLEILELLGIKKG-- 106

Query: 136 QVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA 193
            VVLTK D V    +     +I E L        P+  VSS +G GI  L+  L ++A
Sbjct: 107 LVVLTKADLVDEDRLELVEEEILELLAGTFLADAPIFPVSSVTGEGIEELKNYLDELA 164

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryotes, they do share a common feature. Unlike in E. coli, these SECIS elements are located in the 3' UTRs. This group contains bacterial SelBs, as well as, one from archaea. Length = 170

>gnl|CDD|206743 cd11383, YfjP, YfjP GTPase

 Score = 52.0 bits (125), Expect = 6e-09
 Identities = 36/140 (25%), Positives = 53/140 (37%), Gaps = 14/140 (10%)

Query: 25  AFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTK---LCLVDLPGYGFAY 81
              G++  GKSS+ NAL     V    D+   T+    +   T    L L+DLPG G   
Sbjct: 1   GLMGKTGAGKSSLCNALFGT-EVAAVGDRRPTTRAAQAYVWQTGGDGLVLLDLPGVGERG 59

Query: 82  AKEEVKDAW-EELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISL-MERSQTKYQVVL 139
                +D   EEL +  +        V  L+D        DH+   L +         VL
Sbjct: 60  ----RRDREYEELYRRLLPE---ADLVLWLLDADDRALAADHDFYLLPLAGHDAPLLFVL 112

Query: 140 TKTDTVFPIDVARRAMQIEE 159
            + D V  +  AR    ++E
Sbjct: 113 NQVDPVLAV-SARTGWGLDE 131

The Era (E. coli Ras-like protein)-like YfjP subfamily includes several uncharacterized bacterial GTPases that are similar to Era. They generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. Length = 140

>gnl|CDD|224083 COG1161, COG1161, Predicted GTPases [General function prediction only]

 Score = 53.9 bits (130), Expect = 8e-09
 Identities = 21/52 (40%), Positives = 32/52 (61%), Gaps = 1/52 (1%)

Query: 28  GRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGF 79
           G  NVGKS+++N L  +  V +TS++PG T+ I + KL   + L+D PG   
Sbjct: 139 GYPNVGKSTLINRLLGK-KVAKTSNRPGTTKGIQWIKLDDGIYLLDTPGIIP 189

Length = 322

>gnl|CDD|206647 cd00881, GTP_translation_factor, GTP translation factor family primarily contains translation initiation, elongation and release factors

 Score = 52.3 bits (126), Expect = 9e-09
 Identities = 37/188 (19%), Positives = 66/188 (35%), Gaps = 35/188 (18%)

Query: 24  IAFAGRSNVGKSSMLNALTRQWGVV--------RTSD------KPGLTQTINFFKLGTKL 69
           +   G  + GK+++  +L  Q G +           D      + G+T      +     
Sbjct: 2   VGVIGHVDHGKTTLTGSLLYQTGAIDRRGTRKETFLDTLKEERERGITIKTGVVEFEWPK 61

Query: 70  C---LVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELIS 126
                +D PG+             E+  KE V          L++D   GV+P+  E ++
Sbjct: 62  RRINFIDTPGH-------------EDFSKETVRGLAQADGALLVVDANEGVEPQTREHLN 108

Query: 127 LMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQ-----PVMMVSSKSGAG 181
           +         V + K D V   D      +I+E LK            P++ +S+ +G G
Sbjct: 109 IALAGGLPIIVAVNKIDRVGEEDFDEVLREIKELLKLIGFTFLKGKDVPIIPISALTGEG 168

Query: 182 IRSLRTVL 189
           I  L   +
Sbjct: 169 IEELLDAI 176

The GTP translation factor family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function. Length = 183

>gnl|CDD|234624 PRK00089, era, GTPase Era; Reviewed

 Score = 53.1 bits (129), Expect = 1e-08
 Identities = 41/190 (21%), Positives = 72/190 (37%), Gaps = 51/190 (26%)

Query: 24  IAFAGRSNVGKSSMLNALTRQWGVVRTSDKP-------------GLTQTINFFKLGTKLC 70
           +A  GR NVGKS++LNAL  Q  +   S KP                Q I          
Sbjct: 8   VAIVGRPNVGKSTLLNALVGQ-KISIVSPKPQTTRHRIRGIVTEDDAQII---------- 56

Query: 71  LVDLPGYGFA-------YAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHE 123
            VD PG              +    + ++         V L  V  ++D    + P D  
Sbjct: 57  FVDTPGI-HKPKRALNRAMNKAAWSSLKD---------VDL--VLFVVDADEKIGPGDEF 104

Query: 124 LISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQP--VMMVSSKSGAG 181
           ++  +++ +T   +VL K D V   +      ++   L+  + L+    ++ +S+  G  
Sbjct: 105 ILEKLKKVKTPVILVLNKIDLVKDKE------ELLPLLEELSELMDFAEIVPISALKGDN 158

Query: 182 IRSLRTVLSK 191
           +  L  V++K
Sbjct: 159 VDELLDVIAK 168

Length = 292

>gnl|CDD|206749 cd01856, YlqF, Circularly permuted YlqF GTPase

 Score = 51.4 bits (124), Expect = 2e-08
 Identities = 17/46 (36%), Positives = 30/46 (65%), Gaps = 1/46 (2%)

Query: 31  NVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPG 76
           NVGKS+++N L  +  V +  +KPG+T+   + ++G  + L+D PG
Sbjct: 125 NVGKSTLINRLRGK-KVAKVGNKPGVTRGQQWIRIGPNIELLDTPG 169

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in all eukaryotes as well as a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga). Length = 171

>gnl|CDD|224082 COG1160, COG1160, Predicted GTPases [General function prediction only]

 Score = 52.6 bits (127), Expect = 2e-08
 Identities = 37/132 (28%), Positives = 66/132 (50%), Gaps = 20/132 (15%)

Query: 21  LPEIAFAGRSNVGKSSMLNALTRQWGVVR---TSDKPGLTQTINFFK---LGTKLCLVDL 74
            P +A  GR NVGKS++ N LT +    R    SD PG+T+   +     LG +  L+D 
Sbjct: 3   TPVVAIVGRPNVGKSTLFNRLTGR----RIAIVSDTPGVTRDRIYGDAEWLGREFILIDT 58

Query: 75  PGYGFAYAKEEVKDAWEELVKEYVSTRVSLKR---VCLLIDTKWGVKPRDHELISLMERS 131
            G       +  +D  +EL++E     ++++    +  ++D + G+ P D E+  ++ RS
Sbjct: 59  GGL-----DDGDEDELQELIRE--QALIAIEEADVILFVVDGREGITPADEEIAKILRRS 111

Query: 132 QTKYQVVLTKTD 143
           +    +V+ K D
Sbjct: 112 KKPVILVVNKID 123

Length = 444

>gnl|CDD|223561 COG0486, ThdF, Predicted GTPase [General function prediction only]

 Score = 52.6 bits (127), Expect = 2e-08
 Identities = 49/184 (26%), Positives = 76/184 (41%), Gaps = 42/184 (22%)

Query: 24  IAFAGRSNVGKSSMLNALTRQ-WGVVRTSDKPGLTQTI--NFFKL-GTKLCLVDLPGY-- 77
           +   GR NVGKSS+LNAL  +   +V  +D  G T+ +      L G  + LVD  G   
Sbjct: 220 VVIIGRPNVGKSSLLNALLGRDRAIV--TDIAGTTRDVIEEDINLNGIPVRLVDTAGIRE 277

Query: 78  --------GFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLME 129
                   G   AK+ +++A                 V  ++D    +   D  LI L  
Sbjct: 278 TDDVVERIGIERAKKAIEEA---------------DLVLFVLDASQPLDKEDLALIEL-L 321

Query: 130 RSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVL 189
             +    VVL K D V  I+         ES K  N     ++ +S+K+G G+ +LR  +
Sbjct: 322 PKKKPIIVVLNKADLVSKIE--------LESEKLANG--DAIISISAKTGEGLDALREAI 371

Query: 190 SKIA 193
            ++ 
Sbjct: 372 KQLF 375

Length = 454

>gnl|CDD|206682 cd01895, EngA2, EngA2 GTPase contains the second domain of EngA

 Score = 50.5 bits (122), Expect = 4e-08
 Identities = 47/174 (27%), Positives = 78/174 (44%), Gaps = 24/174 (13%)

Query: 24  IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQ---TINFFKLGTKLCLVDLPGYGFA 80
           IA  GR NVGKSS+LNAL  +  V+  SD  G T+    + F   G K  L+D  G    
Sbjct: 5   IAIIGRPNVGKSSLLNALLGEERVI-VSDIAGTTRDSIDVPFEYDGQKYTLIDTAG---I 60

Query: 81  YAKEEVKDAWEELVKEYVSTRVSLKR---VCLLIDTKWGVKPRDHELISLMERSQTKYQV 137
             K +V +  E+     + T  +++R   V L++D   G+  +D  +  L+        +
Sbjct: 61  RKKGKVTEGIEKYS--VLRTLKAIERADVVLLVLDASEGITEQDLRIAGLILEEGKALII 118

Query: 138 VLTKTDTVFPIDVARRAM--QIEESLK----ANNSLVQPVMMVSSKSGAGIRSL 185
           V+ K D V   +   +    ++   L     A      P++ +S+ +G G+  L
Sbjct: 119 VVNKWDLVEKDEKTMKEFEKELRRKLPFLDYA------PIVFISALTGQGVDKL 166

This EngA2 subfamily CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability. Length = 174

>gnl|CDD|206681 cd01894, EngA1, EngA1 GTPase contains the first domain of EngA

 Score = 49.4 bits (119), Expect = 9e-08
 Identities = 31/125 (24%), Positives = 57/125 (45%), Gaps = 21/125 (16%)

Query: 28  GRSNVGKSSMLNALTRQWGVVR---TSDKPGLT---QTINFFKLGTKLCLVDLPGYGFAY 81
           GR NVGKS++ N LT +    R    SD PG+T   +       G +  L+D  G     
Sbjct: 4   GRPNVGKSTLFNRLTGR----RDAIVSDTPGVTRDRKYGEAEWGGREFILIDTGGI---- 55

Query: 82  AKEEVKDAWEELVKEYVSTRVSLKR---VCLLIDTKWGVKPRDHELISLMERSQTKYQVV 138
             E   +   + ++E     ++++    +  ++D + G+ P D E+   + +S+    +V
Sbjct: 56  --EPDDEGISKEIRE--QAEIAIEEADVILFVVDGREGLTPADEEIAKYLRKSKKPVILV 111

Query: 139 LTKTD 143
           + K D
Sbjct: 112 VNKID 116

This EngA1 subfamily CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability. Length = 157

>gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain

 Score = 49.3 bits (118), Expect = 1e-07
 Identities = 37/172 (21%), Positives = 67/172 (38%), Gaps = 27/172 (15%)

Query: 24  IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FFKLG---TKLCLVDLPGYG 78
           I   G  NVGKS++LN L      + T  KPG T+       +      K  L+D  G  
Sbjct: 4   IVIVGDPNVGKSTLLNRLLGNKISI-TEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAG-- 60

Query: 79  FAYAKEEVKDAWEELVKEYVSTRVSLKRVC----LLIDTKWGVKPRDHELISLMERSQTK 134
                   ++ ++ + + Y     S  RV     L++D +  ++ +  E+I   E S   
Sbjct: 61  --------QEDYDAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAE-SGVP 111

Query: 135 YQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLR 186
             +V  K D           ++   +        +P++ +S+++G  I S  
Sbjct: 112 IILVGNKIDLRD------AKLKTHVAFLFAKLNGEPIIPLSAETGKNIDSAF 157

Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162

>gnl|CDD|235392 PRK05291, trmE, tRNA modification GTPase TrmE; Reviewed

 Score = 50.5 bits (122), Expect = 1e-07
 Identities = 46/189 (24%), Positives = 72/189 (38%), Gaps = 56/189 (29%)

Query: 24  IAFAGRSNVGKSSMLNALTRQWGVVR----TSDKPG-----LTQTINFFKLGTKLCLVDL 74
           +  AGR NVGKSS+LNAL             +D  G     + + IN    G  L L+D 
Sbjct: 218 VVIAGRPNVGKSSLLNALLG-----EERAIVTDIAGTTRDVIEEHINL--DGIPLRLIDT 270

Query: 75  PGY----------GFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHEL 124
            G           G   ++E +++A                 V L++D    +   D E+
Sbjct: 271 AGIRETDDEVEKIGIERSREAIEEA---------------DLVLLVLDASEPLTEEDDEI 315

Query: 125 ISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRS 184
           +   E       VVL K D             +   +       +PV+ +S+K+G GI  
Sbjct: 316 LE--ELKDKPVIVVLNKAD-------------LTGEIDLEEENGKPVIRISAKTGEGIDE 360

Query: 185 LRTVLSKIA 193
           LR  + ++A
Sbjct: 361 LREAIKELA 369

Length = 449

>gnl|CDD|234628 PRK00093, PRK00093, GTP-binding protein Der; Reviewed

 Score = 50.0 bits (121), Expect = 1e-07
 Identities = 35/134 (26%), Positives = 63/134 (47%), Gaps = 25/134 (18%)

Query: 21  LPEIAFAGRSNVGKSSMLNALTRQWGVVR---TSDKPGLT-----QTINFFKLGTKLCLV 72
            P +A  GR NVGKS++ N LT +    R    +D PG+T         +  LG +  L+
Sbjct: 1   KPVVAIVGRPNVGKSTLFNRLTGK----RDAIVADTPGVTRDRIYGEAEW--LGREFILI 54

Query: 73  DLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKR---VCLLIDTKWGVKPRDHELISLME 129
           D  G       E   D +E+ ++E     ++++    +  ++D + G+ P D E+  ++ 
Sbjct: 55  DTGGI------EPDDDGFEKQIRE--QAELAIEEADVILFVVDGRAGLTPADEEIAKILR 106

Query: 130 RSQTKYQVVLTKTD 143
           +S     +V+ K D
Sbjct: 107 KSNKPVILVVNKVD 120

Length = 435

>gnl|CDD|206750 cd01857, HSR1_MMR1, A circularly permuted subfamily of the Ras GTPases

 Score = 48.0 bits (115), Expect = 2e-07
 Identities = 26/64 (40%), Positives = 30/64 (46%), Gaps = 7/64 (10%)

Query: 16  FPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT---QTINFFKLGTKLCLV 72
           F A +   I   G  NVGKSS++NAL      V  S  PG T   QTI    L   + L 
Sbjct: 77  FSALNEATIGLVGYPNVGKSSLINALVGS-KKVSVSSTPGKTKHFQTIF---LEPGITLC 132

Query: 73  DLPG 76
           D PG
Sbjct: 133 DCPG 136

Human HSR1 is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N-terminus. Length = 140

>gnl|CDD|234274 TIGR03594, GTPase_EngA, ribosome-associated GTPase EngA

 Score = 49.7 bits (120), Expect = 2e-07
 Identities = 34/131 (25%), Positives = 59/131 (45%), Gaps = 25/131 (19%)

Query: 24  IAFAGRSNVGKSSMLNALTRQWGVVR---TSDKPGLT-----QTINFFKLGTKLCLVDLP 75
           +A  GR NVGKS++ N LT +    R    SD PG+T         +   G +  L+D  
Sbjct: 2   VAIVGRPNVGKSTLFNRLTGK----RDAIVSDTPGVTRDRKYGDAEW--GGREFILIDTG 55

Query: 76  GYGFAYAKEEVKDAWEELVKEYVSTRVSLK---RVCLLIDTKWGVKPRDHELISLMERSQ 132
           G       EE  D  ++ ++E     ++++    +  ++D + G+ P D E+   + +S 
Sbjct: 56  GI------EEDDDGLDKQIRE--QAEIAIEEADVILFVVDGREGLTPEDEEIAKWLRKSG 107

Query: 133 TKYQVVLTKTD 143
               +V  K D
Sbjct: 108 KPVILVANKID 118

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability [Protein synthesis, Other]. Length = 429

>gnl|CDD|224081 COG1159, Era, GTPase [General function prediction only]

 Score = 48.3 bits (116), Expect = 5e-07
 Identities = 42/173 (24%), Positives = 77/173 (44%), Gaps = 17/173 (9%)

Query: 24  IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT----QTINFFKLGTKLCLVDLPGYGF 79
           +A  GR NVGKS++LNAL  Q  +   S KP  T    + I       ++  VD PG   
Sbjct: 9   VAIIGRPNVGKSTLLNALVGQ-KISIVSPKPQTTRNRIRGIVTTD-NAQIIFVDTPGI-- 64

Query: 80  AYAKEEVKDAWEE-LVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVV 138
                + K A  E + K   S    +  +  ++D   G  P D  ++  +++++T   +V
Sbjct: 65  ----HKPKHALGELMNKAARSALKDVDLILFVVDADEGWGPGDEFILEQLKKTKTPVILV 120

Query: 139 LTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSK 191
           + K D V P       +++   LK      + ++ +S+  G  + +L  ++ +
Sbjct: 121 VNKIDKVKP---KTVLLKLIAFLKKLLP-FKEIVPISALKGDNVDTLLEIIKE 169

Length = 298

>gnl|CDD|234274 TIGR03594, GTPase_EngA, ribosome-associated GTPase EngA

 Score = 48.2 bits (116), Expect = 7e-07
 Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 12/74 (16%)

Query: 11  KVSSSFPAPDLPE--------IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQ---T 59
            +    P  +  E        IA  GR NVGKS+++NAL  +  V+  SD  G T+    
Sbjct: 154 AILELLPEEEEEEEEEDGPIKIAIIGRPNVGKSTLVNALLGEERVI-VSDIAGTTRDSID 212

Query: 60  INFFKLGTKLCLVD 73
           I F + G K  L+D
Sbjct: 213 IPFERNGKKYTLID 226

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability [Protein synthesis, Other]. Length = 429

>gnl|CDD|206748 cd01855, YqeH, Circularly permuted YqeH GTPase

 Score = 46.1 bits (110), Expect = 2e-06
 Identities = 20/62 (32%), Positives = 26/62 (41%), Gaps = 10/62 (16%)

Query: 26  FAGRSNVGKSSMLNALTRQWGVVR----------TSDKPGLTQTINFFKLGTKLCLVDLP 75
             G +NVGKS+++NAL +  G              S  PG T  +    LG    L D P
Sbjct: 130 VVGATNVGKSTLINALLKSNGGKVQAQALVQRLTVSPIPGTTLGLIKIPLGEGKKLYDTP 189

Query: 76  GY 77
           G 
Sbjct: 190 GI 191

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. Length = 191

>gnl|CDD|206727 cd04164, trmE, trmE is a tRNA modification GTPase

 Score = 45.2 bits (108), Expect = 2e-06
 Identities = 47/189 (24%), Positives = 81/189 (42%), Gaps = 55/189 (29%)

Query: 24  IAFAGRSNVGKSSMLNALTRQWGVVR----TSDKPG-----LTQTINFFKLGTKLCLVDL 74
           +  AG+ NVGKSS+LNAL       R     SD  G     + + I+    G  + L+D 
Sbjct: 6   VVIAGKPNVGKSSLLNALAG-----RDRAIVSDIAGTTRDVIEEEIDLG--GIPVRLIDT 58

Query: 75  PGY----------GFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHEL 124
            G           G   A+E +++A  +L             V L++D   G+   D E+
Sbjct: 59  AGLRETEDEIEKIGIERAREAIEEA--DL-------------VLLVVDASEGLDEEDLEI 103

Query: 125 ISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRS 184
           + L   ++    VVL K+D             + ++   +    +P++ +S+K+G GI  
Sbjct: 104 LEL--PAKKPVIVVLNKSDL------------LSDAEGISELNGKPIIAISAKTGEGIDE 149

Query: 185 LRTVLSKIA 193
           L+  L ++A
Sbjct: 150 LKEALLELA 158

TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance. Length = 159

>gnl|CDD|217025 pfam02421, FeoB_N, Ferrous iron transport protein B

 Score = 45.2 bits (108), Expect = 3e-06
 Identities = 28/70 (40%), Positives = 38/70 (54%), Gaps = 11/70 (15%)

Query: 24 IAFAGRSNVGKSSMLNALT--RQWGVVRTSDKPGLTQTIN--FFKL-GTKLCLVDLPG-Y 77
          IA  G  NVGK+++ NALT  RQ       + PG+T       FK  G ++ +VDLPG Y
Sbjct: 3  IALVGNPNVGKTTLFNALTGARQ----HVGNWPGVTVEKKEGTFKYKGYEIEIVDLPGTY 58

Query: 78 GF-AYAKEEV 86
              Y++EE 
Sbjct: 59 SLSPYSEEEK 68

Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent. Length = 190

>gnl|CDD|232980 TIGR00450, mnmE_trmE_thdF, tRNA modification GTPase TrmE

 Score = 45.9 bits (109), Expect = 4e-06
 Identities = 46/168 (27%), Positives = 73/168 (43%), Gaps = 24/168 (14%)

Query: 24  IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---NFFKLGTKLCLVDLPGYGFA 80
           +A  G  NVGKSS+LNAL +Q   +  SD  G T+ +   +F   G  + L+D  G    
Sbjct: 206 LAIVGSPNVGKSSLLNALLKQDRAI-VSDIKGTTRDVVEGDFELNGILIKLLDTAGI--- 261

Query: 81  YAKEEVKDAWEELVKEYVSTRVSLKR---VCLLIDTKWGVKPRDHELISLMERSQTKYQV 137
               E  D  E L  E   +  ++K+   V  ++D    +   D  LI  + +S+  + +
Sbjct: 262 ---REHADFVERLGIE--KSFKAIKQADLVIYVLDASQPLTKDD-FLIIDLNKSKKPFIL 315

Query: 138 VLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSL 185
           VL K      ID+   +++   S K  NS    +     K  A +  L
Sbjct: 316 VLNK------IDLKINSLEFFVSSKVLNSSN--LSAKQLKIKALVDLL 355

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer [Protein synthesis, tRNA and rRNA base modification]. Length = 442

>gnl|CDD|213834 TIGR03597, GTPase_YqeH, ribosome biogenesis GTPase YqeH

 Score = 45.3 bits (108), Expect = 6e-06
 Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 4/56 (7%)

Query: 26  FAGRSNVGKSSMLNALTRQWG----VVRTSDKPGLTQTINFFKLGTKLCLVDLPGY 77
             G +NVGKSS++N L +Q      V+ TS  PG T  +    L     L D PG 
Sbjct: 159 VVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPLDDGHSLYDTPGI 214

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli [Protein synthesis, Other]. Length = 360

>gnl|CDD|206752 cd01859, MJ1464, An uncharacterized, circularly permuted subfamily of the Ras GTPases

 Score = 44.2 bits (105), Expect = 6e-06
 Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 4/56 (7%)

Query: 24  IAFAGRSNVGKSSMLNALTRQWGVVRTS---DKPGLTQTINFFKLGTKLCLVDLPG 76
           +   G   VGKSS++NAL  +     TS     PG T+ I   ++ +K+ L+D PG
Sbjct: 102 VGVVGYPKVGKSSIINALKGR-HSASTSPIPGSPGYTKGIQLVRIDSKIYLIDTPG 156

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus. Length = 157

>gnl|CDD|129567 TIGR00475, selB, selenocysteine-specific elongation factor SelB

 Score = 45.6 bits (108), Expect = 6e-06
 Identities = 40/180 (22%), Positives = 76/180 (42%), Gaps = 27/180 (15%)

Query: 24  IAFAGRSNVGKSSMLNALTRQWGVVRTSDKP-----GLTQTINFFKL---GTKLCLVDLP 75
           IA AG  + GK+++L ALT     +     P     G+T  + F        +L  +D+P
Sbjct: 3   IATAGHVDHGKTTLLKALTG----IAADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVP 58

Query: 76  GYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKY 135
           G+             E+ +   ++    +    L++D   GV  +  E +++++     +
Sbjct: 59  GH-------------EKFISNAIAGGGGIDAALLVVDADEGVMTQTGEHLAVLDLLGIPH 105

Query: 136 Q-VVLTKTDTVFPIDVARRAMQIEESL-KANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA 193
             VV+TK D V   ++ R  M +++ L          +   S+K+G GI  L+  L  + 
Sbjct: 106 TIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTGQGIGELKKELKNLL 165

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes [Protein synthesis, Translation factors]. Length = 581

>gnl|CDD|234628 PRK00093, PRK00093, GTP-binding protein Der; Reviewed

 Score = 44.7 bits (107), Expect = 1e-05
 Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 11/73 (15%)

Query: 11  KVSSSFPAPDLPE-------IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQ---TI 60
            +    P  +  +       IA  GR NVGKSS++NAL  +  V+  SD  G T+     
Sbjct: 156 AILEELPEEEEEDEEDEPIKIAIIGRPNVGKSSLINALLGEERVI-VSDIAGTTRDSIDT 214

Query: 61  NFFKLGTKLCLVD 73
            F + G K  L+D
Sbjct: 215 PFERDGQKYTLID 227

Length = 435

>gnl|CDD|223447 COG0370, FeoB, Fe2+ transport system protein B [Inorganic ion transport and metabolism]

 Score = 45.0 bits (107), Expect = 1e-05
 Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 8/80 (10%)

Query: 22 PEIAFAGRSNVGKSSMLNALTRQWGV-VRTSDKPGLT---QTINFFKLGTKLCLVDLPG- 76
            +A  G  NVGK+++ NALT   G   +  + PG+T   +       G ++ +VDLPG 
Sbjct: 4  LTVALVGNPNVGKTTLFNALT---GANQKVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGT 60

Query: 77 YGFAYAKEEVKDAWEELVKE 96
          Y      E+ K A + L++ 
Sbjct: 61 YSLTAYSEDEKVARDFLLEG 80

Length = 653

>gnl|CDD|225815 COG3276, SelB, Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]

 Score = 44.7 bits (106), Expect = 1e-05
 Identities = 40/175 (22%), Positives = 74/175 (42%), Gaps = 21/175 (12%)

Query: 24  IAFAGRSNVGKSSMLNALT-RQWGVVRTSDKPGLTQTINF--FKLGTK-LCLVDLPGYGF 79
           I  AG  + GK+++L ALT      +    K G+T  + F   KL    +  +D+PG+  
Sbjct: 3   IGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGH-- 60

Query: 80  AYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQ-VV 138
                       + +   ++    +    L++    G+  +  E + +++    K   +V
Sbjct: 61  -----------PDFISNLLAGLGGIDYALLVVAADEGLMAQTGEHLLILDLLGIKNGIIV 109

Query: 139 LTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA 193
           LTK D V   D AR   +I++ L   +     +   S+K+G GI  L+  L  + 
Sbjct: 110 LTKADRV---DEARIEQKIKQILADLSLANAKIFKTSAKTGRGIEELKNELIDLL 161

Length = 447

>gnl|CDD|213833 TIGR03596, GTPase_YlqF, ribosome biogenesis GTP-binding protein YlqF

 Score = 42.9 bits (102), Expect = 4e-05
 Identities = 18/46 (39%), Positives = 29/46 (63%), Gaps = 1/46 (2%)

Query: 31  NVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPG 76
           NVGKS+++N L  +  V +  ++PG+T+   + KL   L L+D PG
Sbjct: 128 NVGKSTLINRLAGK-KVAKVGNRPGVTKGQQWIKLSDGLELLDTPG 172

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members [Protein synthesis, Other]. Length = 276

>gnl|CDD|206739 cd09912, DLP_2, Dynamin-like protein including dynamins, mitofusins, and guanylate-binding proteins

 Score = 42.1 bits (100), Expect = 4e-05
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 8/57 (14%)

Query: 24 IAFAGRSNVGKSSMLNALTRQ----WGVVRTSDKPGLTQTINFFKLGTKLCLVDLPG 76
          +A  G  + GKS++LNAL  +     GV  T+       T+  + L   + LVD PG
Sbjct: 3  LAVVGEFSAGKSTLLNALLGEEVLPTGVTPTTAVI----TVLRYGLLKGVVLVDTPG 55

The dynamin family of large mechanochemical GTPases includes the classical dynamins and dynamin-like proteins (DLPs) that are found throughout the Eukarya. This family also includes bacterial DLPs. These proteins catalyze membrane fission during clathrin-mediated endocytosis. Dynamin consists of five domains; an N-terminal G domain that binds and hydrolyzes GTP, a middle domain (MD) involved in self-assembly and oligomerization, a pleckstrin homology (PH) domain responsible for interactions with the plasma membrane, GED, which is also involved in self-assembly, and a proline arginine rich domain (PRD) that interacts with SH3 domains on accessory proteins. To date, three vertebrate dynamin genes have been identified; dynamin 1, which is brain specific, mediates uptake of synaptic vesicles in presynaptic terminals; dynamin-2 is expressed ubiquitously and similarly participates in membrane fission; mutations in the MD, PH and GED domains of dynamin 2 have been linked to human diseases such as Charcot-Marie-Tooth peripheral neuropathy and rare forms of centronuclear myopathy. Dynamin 3 participates in megakaryocyte progenitor amplification, and is also involved in cytoplasmic enlargement and the formation of the demarcation membrane system. This family also includes mitofusins (MFN1 and MFN2 in mammals) that are involved in mitochondrial fusion. Dynamin oligomerizes into helical structures around the neck of budding vesicles in a GTP hydrolysis-dependent manner. Length = 180

>gnl|CDD|206667 cd01879, FeoB, Ferrous iron transport protein B (FeoB) family

 Score = 40.9 bits (97), Expect = 8e-05
 Identities = 28/68 (41%), Positives = 39/68 (57%), Gaps = 11/68 (16%)

Query: 25 AFAGRSNVGKSSMLNALT--RQWGVVRTSDKPGLT--QTINFFKLGTKLC-LVDLPG-YG 78
          A  G  NVGK+++ NALT  RQ    +  + PG+T  +    FKLG K   +VDLPG Y 
Sbjct: 1  ALVGNPNVGKTTLFNALTGARQ----KVGNWPGVTVEKKEGEFKLGGKEIEIVDLPGTYS 56

Query: 79 F-AYAKEE 85
             Y+++E
Sbjct: 57 LTPYSEDE 64

Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent. Length = 159

>gnl|CDD|224082 COG1160, COG1160, Predicted GTPases [General function prediction only]

 Score = 40.6 bits (96), Expect = 2e-04
 Identities = 48/170 (28%), Positives = 83/170 (48%), Gaps = 16/170 (9%)

Query: 24  IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQ---TINFFKLGTKLCLVDLPGYGFA 80
           IA  GR NVGKSS++NA+  +  V+  SD  G T+    I F + G K  L+D  G    
Sbjct: 181 IAIIGRPNVGKSSLINAILGEERVI-VSDIAGTTRDSIDIEFERDGRKYVLIDTAG---I 236

Query: 81  YAKEEVKDAWEELVKEYVSTRVSLKR---VCLLIDTKWGVKPRDHELISLMERSQTKYQV 137
             K ++ ++ E+       T  +++R   V L+ID   G+  +D  +  L+E +     +
Sbjct: 237 RRKGKITESVEKY--SVARTLKAIERADVVLLVIDATEGISEQDLRIAGLIEEAGRGIVI 294

Query: 138 VLTKTDTVFPIDVARRAMQIEESLKANNSLV--QPVMMVSSKSGAGIRSL 185
           V+ K D V   D A    + ++ L+     +   P++ +S+ +G G+  L
Sbjct: 295 VVNKWDLVEE-DEATME-EFKKKLRRKLPFLDFAPIVFISALTGQGLDKL 342

Length = 444

>gnl|CDD|206668 cd01881, Obg_like, Obg-like family of GTPases consist of five subfamilies: Obg, DRG, YyaF/YchF, Ygr210, and NOG1

 Score = 39.7 bits (93), Expect = 2e-04
 Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 6/56 (10%)

Query: 25 AFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF----FKLGTKLCLVDLPG 76
             G  NVGKS++L+ALT     V  +  P  T   N     F  G  + ++DLPG
Sbjct: 1  GLVGLPNVGKSTLLSALTS--AKVEIASYPFTTLEPNVGVFEFGDGVDIQIIDLPG 54

The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to form one major branch of the Obg family and the Ygr210 and YchF subfamilies form another branch. No GEFs, GAPs, or GDIs for Obg have been identified. Length = 167

>gnl|CDD|206753 cd04178, Nucleostemin_like, A circularly permuted subfamily of the Ras GTPases

 Score = 39.9 bits (94), Expect = 2e-04
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 31  NVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGY 77
           NVGKSS++N+L R          PG+T+++    L   + L+D PG 
Sbjct: 126 NVGKSSVINSLKRS-RACNVGATPGVTKSMQEVHLDKHVKLLDSPGV 171

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the protein. Length = 171

>gnl|CDD|206746 cd01849, YlqF_related_GTPase, Circularly permuted YlqF-related GTPases

 Score = 38.9 bits (91), Expect = 4e-04
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%)

Query: 24  IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPG 76
           +   G  NVGKSS +NAL  ++  ++    PG T+     KL  ++ L D PG
Sbjct: 94  VGVVGLPNVGKSSFINALLNKFK-LKVGSIPGTTKLQQDVKLDKEIYLYDTPG 145

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases. Length = 146

>gnl|CDD|236570 PRK09563, rbgA, GTPase YlqF; Reviewed

 Score = 39.4 bits (93), Expect = 5e-04
 Identities = 19/46 (41%), Positives = 31/46 (67%), Gaps = 1/46 (2%)

Query: 31  NVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPG 76
           NVGKS+++N L  +  + +T ++PG+T+   + KLG  L L+D PG
Sbjct: 131 NVGKSTLINRLAGK-KIAKTGNRPGVTKAQQWIKLGKGLELLDTPG 175

Length = 287

>gnl|CDD|217416 pfam03193, DUF258, Protein of unknown function, DUF258

 Score = 38.3 bits (90), Expect = 6e-04
 Identities = 24/82 (29%), Positives = 35/82 (42%), Gaps = 10/82 (12%)

Query: 24  IAFAGRSNVGKSSMLNALT---RQW-GVVRTSDKPG--LTQTINFFKLGTKLCLVDLPG- 76
              AG+S VGKS++LNAL        G +      G   T  +  F L     L+D PG 
Sbjct: 38  SVLAGQSGVGKSTLLNALLPELDLRTGEISEKLGRGRHTTTHVELFPLPGGGLLIDTPGF 97

Query: 77  --YGFAY-AKEEVKDAWEELVK 95
              G  +   EE+ + + E  +
Sbjct: 98  RELGLWHLDPEELAEYFPEFRE 119

Length = 161

>gnl|CDD|236546 PRK09518, PRK09518, bifunctional cytidylate kinase/GTPase Der; Reviewed

 Score = 39.4 bits (92), Expect = 7e-04
 Identities = 19/42 (45%), Positives = 25/42 (59%), Gaps = 1/42 (2%)

Query: 4   LEFFAAAKVSSSFPAPD-LPEIAFAGRSNVGKSSMLNALTRQ 44
           L+    A+ +S F  P  L  +A  GR NVGKSS+LN LT +
Sbjct: 432 LDSLKVAEKTSGFLTPSGLRRVALVGRPNVGKSSLLNQLTHE 473

Length = 712

>gnl|CDD|129528 TIGR00436, era, GTP-binding protein Era

 Score = 38.5 bits (90), Expect = 9e-04
 Identities = 29/132 (21%), Positives = 54/132 (40%), Gaps = 14/132 (10%)

Query: 24  IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT----QTINFFKLGTKLCLVDLPGYGF 79
           +A  GR NVGKS++LN L  Q  +  TS K   T      I      +++  +D PG+  
Sbjct: 3   VAILGRPNVGKSTLLNQLHGQ-KISITSPKAQTTRNRISGI-HTTGASQIIFIDTPGF-- 58

Query: 80  AYAKEEVKDAWEELVKEYVSTRVSLKRVCLLID-TKWGVKPRDHELISLMERSQTKYQVV 138
               E+       ++KE  S    +  +  ++D  +W        +++ ++  +    + 
Sbjct: 59  ---HEKKHSLNRLMMKEARSAIGGVDLILFVVDSDQW--NGDGEFVLTKLQNLKRPVVLT 113

Query: 139 LTKTDTVFPIDV 150
             K D  F   +
Sbjct: 114 RNKLDNKFKDKL 125

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein [Protein synthesis, Other]. Length = 270

>gnl|CDD|224084 COG1162, COG1162, Predicted GTPases [General function prediction only]

 Score = 38.4 bits (90), Expect = 0.001
 Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 10/79 (12%)

Query: 25  AFAGRSNVGKSSMLNAL----TRQWGVVRTSDKPG--LTQTINFFKLGTKLCLVDLPGY- 77
              G+S VGKS+++NAL     ++ G +      G   T  +  F L     ++D PG+ 
Sbjct: 168 VLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGGWIIDTPGFR 227

Query: 78  --GFAYA-KEEVKDAWEEL 93
             G A+   E++  A+ E 
Sbjct: 228 SLGLAHLEPEDLVQAFPEF 246

Length = 301

>gnl|CDD|206751 cd01858, NGP_1, A novel nucleolar GTP-binding protein, circularly permuted subfamily of the Ras GTPases

 Score = 37.3 bits (87), Expect = 0.002
 Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 1/53 (1%)

Query: 24  IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPG 76
           + F G  NVGKSS++N L R   V + +  PG T+   +  L  ++ L+D PG
Sbjct: 105 VGFIGYPNVGKSSVINTL-RSKKVCKVAPIPGETKVWQYITLMKRIYLIDCPG 156

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus. Length = 157

>gnl|CDD|215653 pfam00009, GTP_EFTU, Elongation factor Tu GTP binding domain

 Score = 37.1 bits (87), Expect = 0.002
 Identities = 41/186 (22%), Positives = 61/186 (32%), Gaps = 41/186 (22%)

Query: 24  IAFAGRSNVGKSSMLNALT--------RQWGVVRTSDKP------GLTQTINFFKLGTKL 69
           I   G  + GK+++ +AL               R  DK       G+T  I      TK 
Sbjct: 6   IGIIGHVDHGKTTLTDALLYVTGAISKESAKGARVLDKLKEERERGITIKIAAVSFETKK 65

Query: 70  C---LVDLPGYGFAYAKEEVKDAWEELVKE-YVSTRVSLKRVCLLIDTKWGVKPRDHELI 125
               ++D PG+              +  KE             L++D   GV P+  E +
Sbjct: 66  RLINIIDTPGH-------------VDFTKEMIRGASQ-ADGAILVVDAVEGVMPQTREHL 111

Query: 126 SLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEE------SLKANNSLVQPVMMVSSKSG 179
            L +       V + K D V   D A     +EE                PV+  S+ +G
Sbjct: 112 LLAKTLGVPIIVFINKIDRV---DDAELEEVVEEISRELLEKYGFGGETVPVVPGSALTG 168

Query: 180 AGIRSL 185
            GI  L
Sbjct: 169 EGIDEL 174

This domain contains a P-loop motif, also found in several other families such as pfam00071, pfam00025 and pfam00063. Elongation factor Tu consists of three structural domains, this plus two C-terminal beta barrel domains. Length = 184

>gnl|CDD|130988 TIGR01933, hflK, HflK protein

 Score = 36.6 bits (85), Expect = 0.004
 Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 3/69 (4%)

Query: 27  AGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEV 86
           A R  +G S+M + LT     +R   K  L + I+ + LG  +  V+      A   EEV
Sbjct: 95  ALRGVIGDSTMDDILTEGRSQIREDTKERLNEIIDNYDLGITVTDVNFQS---ARPPEEV 151

Query: 87  KDAWEELVK 95
           K+A+++++ 
Sbjct: 152 KEAFDDVII 160

HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH by HflKC appears to be negative (PMID:8947034,PMID:96367) [SS 8/27/03]. Length = 261

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	198
COG0218	200	Predicted GTPase [General function prediction only	100.0
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	100.0
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	99.97
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	99.96
COG1159	298	Era GTPase [General function prediction only]	99.96
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	99.95
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	99.95
COG1160	444	Predicted GTPases [General function prediction onl	99.95
PRK04213	201	GTP-binding protein; Provisional	99.95
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	99.95
PRK15494	339	era GTPase Era; Provisional	99.94
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	99.94
PRK00089	292	era GTPase Era; Reviewed	99.94
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	99.94
PRK12297	424	obgE GTPase CgtA; Reviewed	99.94
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	99.94
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	99.94
COG1160	444	Predicted GTPases [General function prediction onl	99.94
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	99.93
COG0486	454	ThdF Predicted GTPase [General function prediction	99.93
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	99.93
PRK00093	435	GTP-binding protein Der; Reviewed	99.93
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.93
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	99.93
PRK12298	390	obgE GTPase CgtA; Reviewed	99.93
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	99.93
PRK03003	472	GTP-binding protein Der; Reviewed	99.93
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	99.93
cd00881	189	GTP_translation_factor GTP translation factor fami	99.93
PRK12299	335	obgE GTPase CgtA; Reviewed	99.93
TIGR02729	329	Obg_CgtA Obg family GTPase CgtA. This model descri	99.93
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	99.92
PRK12296	500	obgE GTPase CgtA; Reviewed	99.92
PRK03003	472	GTP-binding protein Der; Reviewed	99.92
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.92
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	99.92
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	99.92
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	99.91
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	99.91
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.91
TIGR00475	581	selB selenocysteine-specific elongation factor Sel	99.91
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	99.91
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	99.91
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	99.91
PRK10512	614	selenocysteinyl-tRNA-specific translation factor;	99.91
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	99.91
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	99.91
PRK00093	435	GTP-binding protein Der; Reviewed	99.91
cd04165	224	GTPBP1_like GTPBP1-like. Mammalian GTP binding pro	99.9
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	99.9
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.9
cd04150	159	Arf1_5_like Arf1-Arf5-like subfamily. This subfami	99.9
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	99.9
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	99.9
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	99.9
cd01881	176	Obg_like The Obg-like subfamily consists of five w	99.9
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	99.9
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	99.9
smart00177	175	ARF ARF-like small GTPases; ARF, ADP-ribosylation	99.9
smart00178	184	SAR Sar1p-like members of the Ras-family of small	99.9
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	99.9
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	99.9
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	99.9
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	99.9
PLN00223	181	ADP-ribosylation factor; Provisional	99.9
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	99.9
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	99.9
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	99.9
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	99.9
TIGR00487	587	IF-2 translation initiation factor IF-2. This mode	99.9
PRK15467	158	ethanolamine utilization protein EutP; Provisional	99.9
cd04158	169	ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor	99.89
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	99.89
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	99.89
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	99.89
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	99.89
PTZ00133	182	ADP-ribosylation factor; Provisional	99.89
cd04120	202	Rab12 Rab12 subfamily. Rab12 was first identified	99.89
PRK09554	772	feoB ferrous iron transport protein B; Reviewed	99.89
CHL00189	742	infB translation initiation factor 2; Provisional	99.89
cd04152	183	Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i	99.89
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	99.89
TIGR03680	406	eif2g_arch translation initiation factor 2 subunit	99.89
PRK05306	787	infB translation initiation factor IF-2; Validated	99.89
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	99.89
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	99.89
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	99.89
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	99.89
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	99.89
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	99.89
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	99.89
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	99.89
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	99.89
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	99.89
PRK11058	426	GTPase HflX; Provisional	99.89
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	99.89
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	99.89
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	99.89
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	99.89
cd04142	198	RRP22 RRP22 subfamily. RRP22 (Ras-related protein	99.89
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	99.89
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	99.89
PTZ00369	189	Ras-like protein; Provisional	99.89
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	99.88
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	99.88
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	99.88
TIGR00491	590	aIF-2 translation initiation factor aIF-2/yIF-2. T	99.88
cd01896	233	DRG The developmentally regulated GTP-binding prot	99.88
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	99.88
cd04144	190	Ras2 Ras2 subfamily. The Ras2 subfamily, found exc	99.88
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	99.88
COG0370	653	FeoB Fe2+ transport system protein B [Inorganic io	99.88
KOG0092	200	consensus GTPase Rab5/YPT51 and related small G pr	99.88
PRK12317	425	elongation factor 1-alpha; Reviewed	99.88
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	99.88
PRK04000	411	translation initiation factor IF-2 subunit gamma;	99.88
cd04128	182	Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi	99.88
cd04134	189	Rho3 Rho3 subfamily. Rho3 is a member of the Rho f	99.88
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	99.88
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	99.88
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	99.88
PRK12736	394	elongation factor Tu; Reviewed	99.88
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	99.88
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	99.88
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	99.88
COG1163	365	DRG Predicted GTPase [General function prediction	99.88
cd01883	219	EF1_alpha Eukaryotic elongation factor 1 (EF1) alp	99.88
cd04172	182	Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE	99.88
PTZ00327	460	eukaryotic translation initiation factor 2 gamma s	99.88
PLN03118	211	Rab family protein; Provisional	99.88
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	99.88
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	99.88
KOG1489	366	consensus Predicted GTP-binding protein (ODN super	99.88
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	99.88
KOG0094	221	consensus GTPase Rab6/YPT6/Ryh1, small G protein s	99.88
cd04132	187	Rho4_like Rho4-like subfamily. Rho4 is a GTPase th	99.88
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	99.88
cd01874	175	Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas	99.87
PLN03110	216	Rab GTPase; Provisional	99.87
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	99.87
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	99.87
cd04118	193	Rab24 Rab24 subfamily. Rab24 is distinct from othe	99.87
COG1084	346	Predicted GTPase [General function prediction only	99.87
cd01875	191	RhoG RhoG subfamily. RhoG is a GTPase with high se	99.87
CHL00071	409	tufA elongation factor Tu	99.87
KOG1423	379	consensus Ras-like GTPase ERA [Cell cycle control,	99.87
cd04126	220	Rab20 Rab20 subfamily. Rab20 is one of several Rab	99.87
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	99.87
cd04147	198	Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v	99.87
cd04131	178	Rnd Rnd subfamily. The Rnd subfamily contains Rnd1	99.87
cd04174	232	Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb	99.87
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	99.87
TIGR00437	591	feoB ferrous iron transporter FeoB. FeoB (773 amin	99.87
PRK12735	396	elongation factor Tu; Reviewed	99.87
PRK04004	586	translation initiation factor IF-2; Validated	99.86
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	99.86
PRK09866	741	hypothetical protein; Provisional	99.86
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	99.86
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	99.86
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	99.86
cd04133	176	Rop_like Rop subfamily. The Rop (Rho-related prote	99.86
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	99.86
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	99.86
cd01871	174	Rac1_like Rac1-like subfamily. The Rac1-like subfa	99.86
COG3596	296	Predicted GTPase [General function prediction only	99.86
PRK00049	396	elongation factor Tu; Reviewed	99.86
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	99.86
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	99.86
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	99.86
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	99.86
TIGR02034	406	CysN sulfate adenylyltransferase, large subunit. H	99.86
KOG0084	205	consensus GTPase Rab1/YPT1, small G protein superf	99.86
cd04148	221	RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki	99.86
cd04143	247	Rhes_like Rhes_like subfamily. This subfamily incl	99.86
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	99.86
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	99.86
TIGR00485	394	EF-Tu translation elongation factor TU. This align	99.86
cd01852	196	AIG1 AIG1 (avrRpt2-induced gene 1). This represent	99.86
smart00174	174	RHO Rho (Ras homology) subfamily of Ras-like small	99.86
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	99.85
cd04130	173	Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive	99.85
TIGR00483	426	EF-1_alpha translation elongation factor EF-1 alph	99.85
KOG0078	207	consensus GTP-binding protein SEC4, small G protei	99.85
TIGR01393	595	lepA GTP-binding protein LepA. LepA (GUF1 in Sacca	99.85
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	99.85
PLN03127	447	Elongation factor Tu; Provisional	99.85
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	99.85
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	99.85
cd04103	158	Centaurin_gamma Centaurin gamma. The centaurins (a	99.85
PLN03108	210	Rab family protein; Provisional	99.85
smart00176	200	RAN Ran (Ras-related nuclear proteins) /TC4 subfam	99.85
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	99.85
cd01892	169	Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr	99.85
COG0532	509	InfB Translation initiation factor 2 (IF-2; GTPase	99.85
TIGR01394	594	TypA_BipA GTP-binding protein TypA/BipA. This bact	99.84
cd04173	222	Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb	99.84
PTZ00141	446	elongation factor 1- alpha; Provisional	99.84
PRK05124	474	cysN sulfate adenylyltransferase subunit 1; Provis	99.84
PRK05433	600	GTP-binding protein LepA; Provisional	99.84
PLN03126	478	Elongation factor Tu; Provisional	99.84
COG2262	411	HflX GTPases [General function prediction only]	99.84
cd04168	237	TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T	99.84
PRK10218	607	GTP-binding protein; Provisional	99.83
COG0536	369	Obg Predicted GTPase [General function prediction	99.83
KOG1191	531	consensus Mitochondrial GTPase [Translation, ribos	99.83
KOG1145	683	consensus Mitochondrial translation initiation fac	99.83
KOG0394	210	consensus Ras-related GTPase [General function pre	99.82
cd01873	195	RhoBTB RhoBTB subfamily. Members of the RhoBTB sub	99.82
cd04105	203	SR_beta Signal recognition particle receptor, beta	99.82
cd01885	222	EF2 EF2 (for archaea and eukarya). Translocation r	99.82
cd01850	276	CDC_Septin CDC/Septin. Septins are a conserved fam	99.82
KOG2486	320	consensus Predicted GTPase [General function predi	99.81
cd04167	213	Snu114p Snu114p subfamily. Snu114p is one of sever	99.81
cd04129	187	Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that	99.81
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	99.81
KOG0073	185	consensus GTP-binding ADP-ribosylation factor-like	99.81
cd04170	268	EF-G_bact Elongation factor G (EF-G) subfamily. Tr	99.81
KOG0098	216	consensus GTPase Rab2, small G protein superfamily	99.8
KOG0462	650	consensus Elongation factor-type GTP-binding prote	99.8
cd01886	270	EF-G Elongation factor G (EF-G) subfamily. Translo	99.8
COG2229	187	Predicted GTPase [General function prediction only	99.8
PLN00043	447	elongation factor 1-alpha; Provisional	99.8
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	99.79
KOG0080	209	consensus GTPase Rab18, small G protein superfamil	99.79
PRK00007	693	elongation factor G; Reviewed	99.79
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	99.79
COG5256	428	TEF1 Translation elongation factor EF-1alpha (GTPa	99.79
KOG0075	186	consensus GTP-binding ADP-ribosylation factor-like	99.79
COG5257	415	GCD11 Translation initiation factor 2, gamma subun	99.79
PRK12739	691	elongation factor G; Reviewed	99.78
cd01853	249	Toc34_like Toc34-like (Translocon at the Outer-env	99.78
KOG1490	620	consensus GTP-binding protein CRFG/NOG1 (ODN super	99.78
cd01882	225	BMS1 Bms1. Bms1 is an essential, evolutionarily co	99.77
KOG0079	198	consensus GTP-binding protein H-ray, small G prote	99.77
TIGR00484	689	EF-G translation elongation factor EF-G. After pep	99.77
cd04169	267	RF3 RF3 subfamily. Peptide chain release factor 3	99.77
COG2895	431	CysN GTPases - Sulfate adenylate transferase subun	99.76
PRK00741	526	prfC peptide chain release factor 3; Provisional	99.76
cd01899	318	Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg	99.76
KOG0087	222	consensus GTPase Rab11/YPT3, small G protein super	99.76
PRK13351	687	elongation factor G; Reviewed	99.75
COG3276	447	SelB Selenocysteine-specific translation elongatio	99.75
TIGR00503	527	prfC peptide chain release factor 3. This translat	99.74
PF04548	212	AIG1: AIG1 family; InterPro: IPR006703 This entry	99.74
PF05049	376	IIGP: Interferon-inducible GTPase (IIGP); InterPro	99.74
PRK13768	253	GTPase; Provisional	99.74
KOG0095	213	consensus GTPase Rab30, small G protein superfamil	99.74
PRK09602	396	translation-associated GTPase; Reviewed	99.73
KOG0076	197	consensus GTP-binding ADP-ribosylation factor-like	99.73
COG4917	148	EutP Ethanolamine utilization protein [Amino acid	99.73
KOG0093	193	consensus GTPase Rab3, small G protein superfamily	99.72
COG1100	219	GTPase SAR1 and related small G proteins [General	99.72
KOG0070	181	consensus GTP-binding ADP-ribosylation factor Arf1	99.72
PF00735	281	Septin: Septin; InterPro: IPR000038 Septins consti	99.72
KOG0090	238	consensus Signal recognition particle receptor, be	99.72
cd04102	202	RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove	99.72
KOG0086	214	consensus GTPase Rab4, small G protein superfamily	99.71
PF09439	181	SRPRB: Signal recognition particle receptor beta s	99.7
KOG0071	180	consensus GTP-binding ADP-ribosylation factor Arf6	99.7
KOG0461	522	consensus Selenocysteine-specific elongation facto	99.69
PRK09435	332	membrane ATPase/protein kinase; Provisional	99.69
PRK14845	1049	translation initiation factor IF-2; Provisional	99.69
smart00053	240	DYNc Dynamin, GTPase. Large GTPases that mediate v	99.69
COG1217	603	TypA Predicted membrane GTPase involved in stress	99.69
KOG1532	366	consensus GTPase XAB1, interacts with DNA repair p	99.68
PTZ00258	390	GTP-binding protein; Provisional	99.68
KOG0072	182	consensus GTP-binding ADP-ribosylation factor-like	99.68
KOG0395	196	consensus Ras-related GTPase [General function pre	99.68
PLN00116	843	translation elongation factor EF-2 subunit; Provis	99.67
PRK12740	668	elongation factor G; Reviewed	99.67
KOG1144	1064	consensus Translation initiation factor 5B (eIF-5B	99.67
TIGR00991	313	3a0901s02IAP34 GTP-binding protein (Chloroplast En	99.66
PTZ00416	836	elongation factor 2; Provisional	99.66
COG0481	603	LepA Membrane GTPase LepA [Cell envelope biogenesi	99.66
KOG1486	364	consensus GTP-binding protein DRG2 (ODN superfamil	99.65
PLN00023	334	GTP-binding protein; Provisional	99.65
KOG0091	213	consensus GTPase Rab39, small G protein superfamil	99.64
COG5019	373	CDC3 Septin family protein [Cell division and chro	99.64
KOG0074	185	consensus GTP-binding ADP-ribosylation factor-like	99.64
PRK07560	731	elongation factor EF-2; Reviewed	99.64
KOG0088	218	consensus GTPase Rab21, small G protein superfamil	99.63
PF00350	168	Dynamin_N: Dynamin family; InterPro: IPR001401 Mem	99.61
KOG0081	219	consensus GTPase Rab27, small G protein superfamil	99.61
KOG0458	603	consensus Elongation factor 1 alpha [Translation,	99.61
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	99.6
KOG1547	336	consensus Septin CDC10 and related P-loop GTPases	99.6
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	99.6
PF04670	232	Gtr1_RagA: Gtr1/RagA G protein conserved region; I	99.6
PRK09601	364	GTP-binding protein YchF; Reviewed	99.6
KOG0083	192	consensus GTPase Rab26/Rab37, small G protein supe	99.6
KOG0097	215	consensus GTPase Rab14, small G protein superfamil	99.59
KOG2655	366	consensus Septin family protein (P-loop GTPase) [C	99.59
COG4108	528	PrfC Peptide chain release factor RF-3 [Translatio	99.59
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	99.58
KOG3883	198	consensus Ras family small GTPase [Signal transduc	99.58
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	99.57
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	99.56
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	99.55
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	99.55
TIGR00993	763	3a0901s04IAP86 chloroplast protein import componen	99.54
COG0050	394	TufB GTPases - translation elongation factors [Tra	99.54
TIGR02836	492	spore_IV_A stage IV sporulation protein A. A compa	99.53
TIGR00490	720	aEF-2 translation elongation factor aEF-2. This mo	99.53
PTZ00099	176	rab6; Provisional	99.51
COG1703	323	ArgK Putative periplasmic protein kinase ArgK and	99.51
COG0012	372	Predicted GTPase, probable translation factor [Tra	99.51
COG5258	527	GTPBP1 GTPase [General function prediction only]	99.51
KOG0410	410	consensus Predicted GTP binding protein [General f	99.5
KOG4252	246	consensus GTP-binding protein [Signal transduction	99.49
COG5192	1077	BMS1 GTP-binding protein required for 40S ribosome	99.48
KOG0466	466	consensus Translation initiation factor 2, gamma s	99.48
KOG0393	198	consensus Ras-related small GTPase, Rho type [Gene	99.48
TIGR00101	199	ureG urease accessory protein UreG. This model rep	99.47
KOG1954	532	consensus Endocytosis/signaling protein EHD1 [Sign	99.47
COG0480	697	FusA Translation elongation factors (GTPases) [Tra	99.47
COG0378	202	HypB Ni2+-binding GTPase involved in regulation of	99.47
KOG1487	358	consensus GTP-binding protein DRG1 (ODN superfamil	99.45
cd01900	274	YchF YchF subfamily. YchF is a member of the Obg f	99.44
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	99.39
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	99.38
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	99.37
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	99.36
KOG3886	295	consensus GTP-binding protein [Signal transduction	99.35
KOG3859	406	consensus Septins (P-loop GTPases) [Cell cycle con	99.32
KOG0077	193	consensus Vesicle coat complex COPII, GTPase subun	99.31
KOG1143	591	consensus Predicted translation elongation factor	99.29
KOG0460	449	consensus Mitochondrial translation elongation fac	99.28
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	99.25
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	99.24
KOG0468	971	consensus U5 snRNP-specific protein [Translation,	99.23
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	99.22
KOG0448	749	consensus Mitofusin 1 GTPase, involved in mitochon	99.21
COG1161	322	Predicted GTPases [General function prediction onl	99.21
KOG0463	641	consensus GTP-binding protein GP-1 [General functi	99.21
KOG1491	391	consensus Predicted GTP-binding protein (ODN super	99.2
PRK09563	287	rbgA GTPase YlqF; Reviewed	99.19
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	99.19
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	99.19
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	99.17
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	99.17
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	99.16
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	99.14
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	99.13
KOG0467	887	consensus Translation elongation factor 2/ribosome	99.11
PRK12288	347	GTPase RsgA; Reviewed	99.11
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	99.1
PRK09563	287	rbgA GTPase YlqF; Reviewed	99.09
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	99.09
COG0523	323	Putative GTPases (G3E family) [General function pr	99.08
KOG0459	501	consensus Polypeptide release factor 3 [Translatio	99.08
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	99.07
cd03112	158	CobW_like The function of this protein family is u	99.04
cd01851	224	GBP Guanylate-binding protein (GBP), N-terminal do	99.03
PRK12289	352	GTPase RsgA; Reviewed	99.03
KOG0447	980	consensus Dynamin-like GTP binding protein [Genera	99.03
KOG1673	205	consensus Ras GTPases [General function prediction	99.03
PRK13796	365	GTPase YqeH; Provisional	99.02
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	99.02
PF02492	178	cobW: CobW/HypB/UreG, nucleotide-binding domain; I	98.96
TIGR00092	368	GTP-binding protein YchF. This predicted GTP-bindi	98.96
PRK12289	352	GTPase RsgA; Reviewed	98.93
PRK10416	318	signal recognition particle-docking protein FtsY;	98.91
PRK00098	298	GTPase RsgA; Reviewed	98.9
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	98.9
COG1162	301	Predicted GTPases [General function prediction onl	98.9
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	98.87
TIGR00064	272	ftsY signal recognition particle-docking protein F	98.87
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	98.85
KOG0096	216	consensus GTPase Ran/TC4/GSP1 (nuclear protein tra	98.84
PRK14974	336	cell division protein FtsY; Provisional	98.84
PRK11537	318	putative GTP-binding protein YjiA; Provisional	98.83
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	98.83
PRK00098	298	GTPase RsgA; Reviewed	98.82
TIGR02475	341	CobW cobalamin biosynthesis protein CobW. A broade	98.81
KOG3905	473	consensus Dynein light intermediate chain [Cell mo	98.81
cd00066	317	G-alpha G protein alpha subunit. The alpha subunit	98.8
KOG1424	562	consensus Predicted GTP-binding protein MMR1 [Gene	98.79
TIGR03348	1169	VI_IcmF type VI secretion protein IcmF. Members of	98.78
KOG0464	753	consensus Elongation factor G [Translation, riboso	98.77
KOG0465	721	consensus Mitochondrial elongation factor [Transla	98.76
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	98.76
KOG2743	391	consensus Cobalamin synthesis protein [Coenzyme tr	98.73
PRK13796	365	GTPase YqeH; Provisional	98.68
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	98.68
PRK12288	347	GTPase RsgA; Reviewed	98.66
KOG2485	335	consensus Conserved ATP/GTP binding protein [Gener	98.63
KOG4423	229	consensus GTP-binding protein-like, RAS superfamil	98.62
KOG2484	435	consensus GTPase [General function prediction only	98.6
KOG1534	273	consensus Putative transcription factor FET5 [Tran	98.6
PRK01889	356	GTPase RsgA; Reviewed	98.58
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	98.58
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	98.55
COG3523	1188	IcmF Type VI protein secretion system component Va	98.53
PF05783	472	DLIC: Dynein light intermediate chain (DLIC); Inte	98.52
cd03114	148	ArgK-like The function of this protein family is u	98.5
PF09547	492	Spore_IV_A: Stage IV sporulation protein A (spore_	98.49
PRK00771	437	signal recognition particle protein Srp54; Provisi	98.47
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	98.43
COG1419	407	FlhF Flagellar GTP-binding protein [Cell motility	98.43
PRK10867	433	signal recognition particle protein; Provisional	98.42
PRK12727	559	flagellar biosynthesis regulator FlhF; Provisional	98.41
cd03115	173	SRP The signal recognition particle (SRP) mediates	98.38
PRK11889	436	flhF flagellar biosynthesis regulator FlhF; Provis	98.37
cd02038	139	FleN-like FleN is a member of the Fer4_NifH superf	98.36
KOG2423	572	consensus Nucleolar GTPase [General function predi	98.36
KOG0082	354	consensus G-protein alpha subunit (small G protein	98.36
TIGR00959	428	ffh signal recognition particle protein. This mode	98.35
COG3640	255	CooC CO dehydrogenase maturation factor [Cell divi	98.32
PRK14721	420	flhF flagellar biosynthesis regulator FlhF; Provis	98.3
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	98.3
PRK12724	432	flagellar biosynthesis regulator FlhF; Provisional	98.27
PRK05703	424	flhF flagellar biosynthesis regulator FlhF; Valida	98.27
PRK12726	407	flagellar biosynthesis regulator FlhF; Provisional	98.27
KOG3887	347	consensus Predicted small GTPase involved in nucle	98.24
KOG2484	435	consensus GTPase [General function prediction only	98.22
PRK06995	484	flhF flagellar biosynthesis regulator FlhF; Valida	98.21
PRK12723	388	flagellar biosynthesis regulator FlhF; Provisional	98.2
smart00010	124	small_GTPase Small GTPase of the Ras superfamily;	98.14
KOG0446	657	consensus Vacuolar sorting protein VPS1, dynamin,	98.14
PRK14723	767	flhF flagellar biosynthesis regulator FlhF; Provis	98.12
KOG1424	562	consensus Predicted GTP-binding protein MMR1 [Gene	98.09
KOG0469	842	consensus Elongation factor 2 [Translation, riboso	98.08
KOG0780	483	consensus Signal recognition particle, subunit Srp	98.07
PRK01889	356	GTPase RsgA; Reviewed	98.04
PRK06731	270	flhF flagellar biosynthesis regulator FlhF; Valida	98.01
PRK13695	174	putative NTPase; Provisional	97.99
COG1162	301	Predicted GTPases [General function prediction onl	97.97
PF00004	132	AAA: ATPase family associated with various cellula	97.97
COG0541	451	Ffh Signal recognition particle GTPase [Intracellu	97.96
COG1161	322	Predicted GTPases [General function prediction onl	97.92
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	97.85
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	97.81
smart00275	342	G_alpha G protein alpha subunit. Subunit of G prot	97.8
KOG1533	290	consensus Predicted GTPase [General function predi	97.75
cd03111	106	CpaE_like This protein family consists of proteins	97.75
KOG2423	572	consensus Nucleolar GTPase [General function predi	97.75
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	97.72
TIGR03574	249	selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Mem	97.71
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	97.69
COG0703	172	AroK Shikimate kinase [Amino acid transport and me	97.69
PRK08118	167	topology modulation protein; Reviewed	97.68
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	97.67
COG0552	340	FtsY Signal recognition particle GTPase [Intracell	97.67
cd02036	179	MinD Bacterial cell division requires the formatio	97.66
PF06858	58	NOG1: Nucleolar GTP-binding protein 1 (NOG1); Inte	97.65
PF13555	62	AAA_29: P-loop containing region of AAA domain	97.63
cd01983	99	Fer4_NifH The Fer4_NifH superfamily contains a var	97.63
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	97.63
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	97.59
PRK07261	171	topology modulation protein; Provisional	97.58
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	97.57
PRK08727	233	hypothetical protein; Validated	97.56
PRK14737	186	gmk guanylate kinase; Provisional	97.56
PRK14738	206	gmk guanylate kinase; Provisional	97.56
PF03205	140	MobB: Molybdopterin guanine dinucleotide synthesis	97.52
PF07015	231	VirC1: VirC1 protein; InterPro: IPR009744 This fam	97.5
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	97.5
PRK04195	482	replication factor C large subunit; Provisional	97.5
PF00005	137	ABC_tran: ABC transporter This structure is on hol	97.5
PF05621	302	TniB: Bacterial TniB protein; InterPro: IPR008868	97.49
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	97.47
PRK10751	173	molybdopterin-guanine dinucleotide biosynthesis pr	97.45
TIGR01313	163	therm_gnt_kin carbohydrate kinase, thermoresistant	97.45
PRK14530	215	adenylate kinase; Provisional	97.42
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	97.41
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	97.39
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	97.38
PF13521	163	AAA_28: AAA domain; PDB: 1LW7_A.	97.38
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	97.38
PRK05480	209	uridine/cytidine kinase; Provisional	97.36
PRK05416	288	glmZ(sRNA)-inactivating NTPase; Provisional	97.36
TIGR00235	207	udk uridine kinase. Model contains a number of lon	97.36
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	97.36
COG0194	191	Gmk Guanylate kinase [Nucleotide transport and met	97.35
COG4525	259	TauB ABC-type taurine transport system, ATPase com	97.35
KOG2485	335	consensus Conserved ATP/GTP binding protein [Gener	97.35
smart00382	148	AAA ATPases associated with a variety of cellular	97.34
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	97.32
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	97.32
COG3638	258	ABC-type phosphate/phosphonate transport system, A	97.31
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	97.31
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	97.31
PRK06217	183	hypothetical protein; Validated	97.3
PF02263	260	GBP: Guanylate-binding protein, N-terminal domain;	97.28
KOG3347	176	consensus Predicted nucleotide kinase/nuclear prot	97.26
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	97.25
PRK03839	180	putative kinase; Provisional	97.25
PRK00300	205	gmk guanylate kinase; Provisional	97.25
PF08433	270	KTI12: Chromatin associated protein KTI12 ; InterP	97.24
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	97.24
cd03110	179	Fer4_NifH_child This protein family's function is	97.23
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	97.23
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	97.23
PRK13949	169	shikimate kinase; Provisional	97.22
COG1341	398	Predicted GTPase or GTP-binding protein [General f	97.22
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	97.22
PRK14531	183	adenylate kinase; Provisional	97.21
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	97.21
PRK08233	182	hypothetical protein; Provisional	97.21
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	97.21

>COG0218 Predicted GTPase [General function prediction only]

Probab=100.00  E-value=1.6e-34  Score=201.23  Aligned_cols=194  Identities=43%  Similarity=0.618  Sum_probs=175.0

Q ss_pred             ccceeeccCCcCCCCCCCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEeCCceEEEeCCCCccccc
Q 029158            3 KLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYA   82 (198)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~iiDtpG~~~~~~   82 (198)
                      +.+|+.++....+.|++..+.|+++|.+|+|||||||+|+++..++.++..||.|+.+.++..+..+.++|.||+|.+..
T Consensus         6 ~~~f~~sa~~~~~~P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~~~lVDlPGYGyAkv   85 (200)
T COG0218           6 KAKFITSAPDIKQYPEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDELRLVDLPGYGYAKV   85 (200)
T ss_pred             ccEEEEecCCHhhCCCCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCcEEEEeCCCcccccC
Confidence            57899999999999999999999999999999999999999877899999999999999999988899999999999988


Q ss_pred             hhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHH
Q 029158           83 KEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLK  162 (198)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~  162 (198)
                      .....+.|..++.+|+.......++++++|+.+++...|.++++++...+.|+++|+||+|.....+..+....+.+.+.
T Consensus        86 ~k~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~  165 (200)
T COG0218          86 PKEVKEKWKKLIEEYLEKRANLKGVVLLIDARHPPKDLDREMIEFLLELGIPVIVVLTKADKLKKSERNKQLNKVAEELK  165 (200)
T ss_pred             CHHHHHHHHHHHHHHHhhchhheEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEccccCChhHHHHHHHHHHHHhc
Confidence            88999999999999999998899999999999999999999999999999999999999999998877777777776554


Q ss_pred             hccCCCCCcEEeccCCCCChHHHHHHHHHhhccc
Q 029158          163 ANNSLVQPVMMVSSKSGAGIRSLRTVLSKIARFA  196 (198)
Q Consensus       163 ~~~~~~~~v~~~Sa~~~~gi~~l~~~i~~~~~~~  196 (198)
                      .......-++..|+.++.|++++.+.|.+.+...
T Consensus       166 ~~~~~~~~~~~~ss~~k~Gi~~l~~~i~~~~~~~  199 (200)
T COG0218         166 KPPPDDQWVVLFSSLKKKGIDELKAKILEWLKEA  199 (200)
T ss_pred             CCCCccceEEEEecccccCHHHHHHHHHHHhhcc
Confidence            4332222288999999999999999999887653

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=100.00  E-value=3.1e-31  Score=188.45  Aligned_cols=178  Identities=41%  Similarity=0.635  Sum_probs=146.2

Q ss_pred             ceeeccCCcCCCCCCCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEeCCceEEEeCCCCccccchh
Q 029158            5 EFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKE   84 (198)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~iiDtpG~~~~~~~~   84 (198)
                      +|++++.+..+.|+...++|+++|.+|+|||||+++|++........+.+++|.+..++..+.++.+|||||++......
T Consensus         2 ~~~~~~~~~~~~~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpG~~~~~~~~   81 (179)
T TIGR03598         2 EFVKSAVKLKQLPPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVNDGFRLVDLPGYGYAKVSK   81 (179)
T ss_pred             EEEeeeccHhhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCCcEEEEeCCCCccccCCh
Confidence            68999999999999999999999999999999999999874355667778888887766656689999999987654444


Q ss_pred             HHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhc
Q 029158           85 EVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKAN  164 (198)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~  164 (198)
                      .....|..+...|+.....++++++|+|+++++...+.+++..+...+.|+++|+||+|+..+.+.+...+.+++.+...
T Consensus        82 ~~~~~~~~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~  161 (179)
T TIGR03598        82 EEKEKWQKLIEEYLEKRENLKGVVLLMDIRHPLKELDLEMLEWLRERGIPVLIVLTKADKLKKSELNKQLKKIKKALKKD  161 (179)
T ss_pred             hHHHHHHHHHHHHHHhChhhcEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhc
Confidence            45566777777788776678999999999988887777778888877899999999999988776666677777776653


Q ss_pred             cCCCCCcEEeccCCCCChH
Q 029158          165 NSLVQPVMMVSSKSGAGIR  183 (198)
Q Consensus       165 ~~~~~~v~~~Sa~~~~gi~  183 (198)
                       ....+++++||++|+|++
T Consensus       162 -~~~~~v~~~Sa~~g~gi~  179 (179)
T TIGR03598       162 -ADDPSVQLFSSLKKTGID  179 (179)
T ss_pred             -cCCCceEEEECCCCCCCC
Confidence             234589999999999974

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=99.97  E-value=1.2e-29  Score=182.72  Aligned_cols=190  Identities=42%  Similarity=0.624  Sum_probs=152.2

Q ss_pred             ccceeeccCCcCCCCCCCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEeCCceEEEeCCCCccccc
Q 029158            3 KLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYA   82 (198)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~iiDtpG~~~~~~   82 (198)
                      +++|.++....+..+....++|+++|.+|+|||||+++|++.+......+.+++|+...+...+.++.+|||||+.....
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~l~l~DtpG~~~~~~   85 (196)
T PRK00454          6 NAEFVTSAPKLEQLPPDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEVNDKLRLVDLPGYGYAKV   85 (196)
T ss_pred             HHHHHHhhccHhhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEecCCeEEEeCCCCCCCcCC
Confidence            45677778888888888999999999999999999999999744566777788888877766678899999999865444


Q ss_pred             hhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHH
Q 029158           83 KEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLK  162 (198)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~  162 (198)
                      .....+.+..+...++.....++++++++|++.+....+.++.+.+...+.|+++++||+|+.+..+.+...+.+++.+.
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~  165 (196)
T PRK00454         86 SKEEKEKWQKLIEEYLRTRENLKGVVLLIDSRHPLKELDLQMIEWLKEYGIPVLIVLTKADKLKKGERKKQLKKVRKALK  165 (196)
T ss_pred             CchHHHHHHHHHHHHHHhCccceEEEEEEecCCCCCHHHHHHHHHHHHcCCcEEEEEECcccCCHHHHHHHHHHHHHHHH
Confidence            44445666777778888777778899999988766666666677777778999999999999887666655566666554


Q ss_pred             hccCCCCCcEEeccCCCCChHHHHHHHHHhhcc
Q 029158          163 ANNSLVQPVMMVSSKSGAGIRSLRTVLSKIARF  195 (198)
Q Consensus       163 ~~~~~~~~v~~~Sa~~~~gi~~l~~~i~~~~~~  195 (198)
                      ..   ..+++++||++++|+++++++|.+.+..
T Consensus       166 ~~---~~~~~~~Sa~~~~gi~~l~~~i~~~~~~  195 (196)
T PRK00454        166 FG---DDEVILFSSLKKQGIDELRAAIAKWLAE  195 (196)
T ss_pred             hc---CCceEEEEcCCCCCHHHHHHHHHHHhcC
Confidence            32   4789999999999999999999988764

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=99.96  E-value=2.9e-29  Score=171.61  Aligned_cols=153  Identities=29%  Similarity=0.344  Sum_probs=111.5

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEE---EEeCCceEEEeCCCCccccchhHHHHHHHHHHHHHH
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF---FKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV   98 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~---~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~   98 (198)
                      .+|+++|.||+|||||+|+|++.+  ..+++++++|.+...   ...+..+.++||||+.+-......    +....+++
T Consensus         1 i~ialvG~PNvGKStLfN~Ltg~~--~~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~e----e~v~~~~l   74 (156)
T PF02421_consen    1 IRIALVGNPNVGKSTLFNALTGAK--QKVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEE----ERVARDYL   74 (156)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHTTS--EEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHH----HHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCC--ceecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcH----HHHHHHHH
Confidence            379999999999999999999985  778999999988653   334688999999996432111111    23333444


Q ss_pred             hcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEeccCC
Q 029158           99 STRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKS  178 (198)
Q Consensus        99 ~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~  178 (198)
                      . ....|++++|+|+++  .+.+.++..++.+.+.|+++|+||+|+..........+.+.+.+      ++|++++||++
T Consensus        75 ~-~~~~D~ii~VvDa~~--l~r~l~l~~ql~e~g~P~vvvlN~~D~a~~~g~~id~~~Ls~~L------g~pvi~~sa~~  145 (156)
T PF02421_consen   75 L-SEKPDLIIVVVDATN--LERNLYLTLQLLELGIPVVVVLNKMDEAERKGIEIDAEKLSERL------GVPVIPVSART  145 (156)
T ss_dssp             H-HTSSSEEEEEEEGGG--HHHHHHHHHHHHHTTSSEEEEEETHHHHHHTTEEE-HHHHHHHH------TS-EEEEBTTT
T ss_pred             h-hcCCCEEEEECCCCC--HHHHHHHHHHHHHcCCCEEEEEeCHHHHHHcCCEECHHHHHHHh------CCCEEEEEeCC
Confidence            3 245899999999986  45567778888888999999999999976554333345555554      48999999999


Q ss_pred             CCChHHHHHHH
Q 029158          179 GAGIRSLRTVL  189 (198)
Q Consensus       179 ~~gi~~l~~~i  189 (198)
                      ++|+++|++.|
T Consensus       146 ~~g~~~L~~~I  156 (156)
T PF02421_consen  146 GEGIDELKDAI  156 (156)
T ss_dssp             TBTHHHHHHHH
T ss_pred             CcCHHHHHhhC
Confidence            99999999876

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>COG1159 Era GTPase [General function prediction only]

Probab=99.96  E-value=4.9e-28  Score=177.72  Aligned_cols=165  Identities=24%  Similarity=0.302  Sum_probs=133.8

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE---EEEeCCceEEEeCCCCccccchhHHHHHHHHHHHH
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE   96 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~---~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~   96 (198)
                      ..-.|+++|.||+|||||+|+|+++ +++.+++.+.||+...   +...+.++.|+||||+...  .   +...+.+...
T Consensus         5 ksGfVaIiGrPNvGKSTLlN~l~G~-KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~p--k---~~l~~~m~~~   78 (298)
T COG1159           5 KSGFVAIIGRPNVGKSTLLNALVGQ-KISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKP--K---HALGELMNKA   78 (298)
T ss_pred             eEEEEEEEcCCCCcHHHHHHHHhcC-ceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCc--c---hHHHHHHHHH
Confidence            3456999999999999999999999 8999999999998632   3334789999999998664  2   2333666777


Q ss_pred             HHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHH-HHHHHHHHHHHHHhccCCCCCcEEec
Q 029158           97 YVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPID-VARRAMQIEESLKANNSLVQPVMMVS  175 (198)
Q Consensus        97 ~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~S  175 (198)
                      .......+|+++||+|+.+++...+..+++.+...+.|+++++||+|...+.. +....+.+....     ....++++|
T Consensus        79 a~~sl~dvDlilfvvd~~~~~~~~d~~il~~lk~~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~-----~f~~ivpiS  153 (298)
T COG1159          79 ARSALKDVDLILFVVDADEGWGPGDEFILEQLKKTKTPVILVVNKIDKVKPKTVLLKLIAFLKKLL-----PFKEIVPIS  153 (298)
T ss_pred             HHHHhccCcEEEEEEeccccCCccHHHHHHHHhhcCCCeEEEEEccccCCcHHHHHHHHHHHHhhC-----CcceEEEee
Confidence            77788889999999999999999898899999887789999999999998776 333333333221     235899999


Q ss_pred             cCCCCChHHHHHHHHHhhcc
Q 029158          176 SKSGAGIRSLRTVLSKIARF  195 (198)
Q Consensus       176 a~~~~gi~~l~~~i~~~~~~  195 (198)
                      |++|.|++.|.+.+..+++.
T Consensus       154 A~~g~n~~~L~~~i~~~Lpe  173 (298)
T COG1159         154 ALKGDNVDTLLEIIKEYLPE  173 (298)
T ss_pred             ccccCCHHHHHHHHHHhCCC
Confidence            99999999999999998864

>TIGR00436 era GTP-binding protein Era

Probab=99.95  E-value=9.1e-27  Score=175.38  Aligned_cols=161  Identities=18%  Similarity=0.167  Sum_probs=115.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE---EEEeCCceEEEeCCCCccccchhHHHHHHHHHHHHHHh
Q 029158           23 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS   99 (198)
Q Consensus        23 ~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~---~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~   99 (198)
                      +|+++|.+|+|||||+|+|++. ....+++.++||+...   ....+.++.++||||+.+..  ..   ....+......
T Consensus         2 ~V~liG~pnvGKSTLln~L~~~-~~~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~--~~---l~~~~~~~~~~   75 (270)
T TIGR00436         2 FVAILGRPNVGKSTLLNQLHGQ-KISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKK--HS---LNRLMMKEARS   75 (270)
T ss_pred             EEEEECCCCCCHHHHHHHHhCC-cEeecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCc--ch---HHHHHHHHHHH
Confidence            6899999999999999999998 5667788888887632   22235679999999986531  11   11223333444


Q ss_pred             cccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEeccCCC
Q 029158          100 TRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSG  179 (198)
Q Consensus       100 ~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~~  179 (198)
                      ....+|++++|+|++..... +..++..+...+.|+++|+||+|+............+...    . ...+++++||++|
T Consensus        76 ~l~~aDvvl~VvD~~~~~~~-~~~i~~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~----~-~~~~v~~iSA~~g  149 (270)
T TIGR00436        76 AIGGVDLILFVVDSDQWNGD-GEFVLTKLQNLKRPVVLTRNKLDNKFKDKLLPLIDKYAIL----E-DFKDIVPISALTG  149 (270)
T ss_pred             HHhhCCEEEEEEECCCCCch-HHHHHHHHHhcCCCEEEEEECeeCCCHHHHHHHHHHHHhh----c-CCCceEEEecCCC
Confidence            44569999999999875333 2556777777789999999999998544332222222211    1 1247999999999


Q ss_pred             CChHHHHHHHHHhhcc
Q 029158          180 AGIRSLRTVLSKIARF  195 (198)
Q Consensus       180 ~gi~~l~~~i~~~~~~  195 (198)
                      .|+++++++|.+.++.
T Consensus       150 ~gi~~L~~~l~~~l~~  165 (270)
T TIGR00436       150 DNTSFLAAFIEVHLPE  165 (270)
T ss_pred             CCHHHHHHHHHHhCCC
Confidence            9999999999987754

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=99.95  E-value=6.9e-26  Score=158.92  Aligned_cols=170  Identities=45%  Similarity=0.715  Sum_probs=133.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHHHHhccc
Q 029158           23 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRV  102 (198)
Q Consensus        23 ~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (198)
                      .|+++|.+|+|||||++.+++.......++..++|........+..+.++||||++.........+.+......|+....
T Consensus         1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (170)
T cd01876           1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVNDKFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLENRE   80 (170)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccCeEEEecCCCccccccCHHHHHHHHHHHHHHHHhCh
Confidence            37999999999999999999554556667777777776666666799999999998765555555666777778888777


Q ss_pred             ccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEeccCCCCCh
Q 029158          103 SLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGI  182 (198)
Q Consensus       103 ~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~~~gi  182 (198)
                      .++++++++|..........++++.+...+.|+++|+||+|+..+.+.......+...+.. .....+++++||+++.|+
T Consensus        81 ~~~~~~~v~d~~~~~~~~~~~~~~~l~~~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~Sa~~~~~~  159 (170)
T cd01876          81 NLKGVVLLIDSRHGPTEIDLEMLDWLEELGIPFLVVLTKADKLKKSELAKALKEIKKELKL-FEIDPPIILFSSLKGQGI  159 (170)
T ss_pred             hhhEEEEEEEcCcCCCHhHHHHHHHHHHcCCCEEEEEEchhcCChHHHHHHHHHHHHHHHh-ccCCCceEEEecCCCCCH
Confidence            7899999999987666666677788887789999999999998776655555555544432 233578999999999999


Q ss_pred             HHHHHHHHHhh
Q 029158          183 RSLRTVLSKIA  193 (198)
Q Consensus       183 ~~l~~~i~~~~  193 (198)
                      ++++++|.+++
T Consensus       160 ~~l~~~l~~~~  170 (170)
T cd01876         160 DELRALIEKWL  170 (170)
T ss_pred             HHHHHHHHHhC
Confidence            99999998763

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.95  E-value=9.2e-27  Score=179.83  Aligned_cols=158  Identities=25%  Similarity=0.372  Sum_probs=127.2

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEE---eCCceEEEeCCCCccccchhHHHHHHHHHHHHHH
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV   98 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~   98 (198)
                      +.|+++|.||+|||||+|+|++. ..+.+++.+|+|+|..+..   .+..+.++||+|+..... +   +....+..+.+
T Consensus         4 ~~VAIVGRPNVGKSTLFNRL~g~-r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~-~---~l~~~i~~Qa~   78 (444)
T COG1160           4 PVVAIVGRPNVGKSTLFNRLTGR-RIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDE-D---ELQELIREQAL   78 (444)
T ss_pred             CEEEEECCCCCcHHHHHHHHhCC-eeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCCc-h---HHHHHHHHHHH
Confidence            78999999999999999999999 7899999999999965433   367799999999864321 1   22244555666


Q ss_pred             hcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEeccCC
Q 029158           99 STRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKS  178 (198)
Q Consensus        99 ~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~  178 (198)
                      .....||+++||+|+.+|+...|.++.+.+++.++|+++|+||+|-...+.      ...+. ..  .....++++||-+
T Consensus        79 ~Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~~~kpviLvvNK~D~~~~e~------~~~ef-ys--lG~g~~~~ISA~H  149 (444)
T COG1160          79 IAIEEADVILFVVDGREGITPADEEIAKILRRSKKPVILVVNKIDNLKAEE------LAYEF-YS--LGFGEPVPISAEH  149 (444)
T ss_pred             HHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEEcccCchhhh------hHHHH-Hh--cCCCCceEeehhh
Confidence            666679999999999999999999999999987899999999999874321      11111 11  2246789999999


Q ss_pred             CCChHHHHHHHHHhh
Q 029158          179 GAGIRSLRTVLSKIA  193 (198)
Q Consensus       179 ~~gi~~l~~~i~~~~  193 (198)
                      |.|+.+|.+++.+.+
T Consensus       150 g~Gi~dLld~v~~~l  164 (444)
T COG1160         150 GRGIGDLLDAVLELL  164 (444)
T ss_pred             ccCHHHHHHHHHhhc
Confidence            999999999999987

>PRK04213 GTP-binding protein; Provisional

Probab=99.95  E-value=1.3e-25  Score=162.37  Aligned_cols=173  Identities=29%  Similarity=0.460  Sum_probs=116.3

Q ss_pred             CCCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEeCCceEEEeCCCCccccchh-HHHHHHHHHHHH
Q 029158           18 APDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKE-EVKDAWEELVKE   96 (198)
Q Consensus        18 ~~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~iiDtpG~~~~~~~~-~~~~~~~~~~~~   96 (198)
                      +...++|+++|.+|+|||||+++|++..  ...+..+++|........+ ++.+|||||++...... ...+.+......
T Consensus         6 ~~~~~~i~i~G~~~~GKSsLin~l~~~~--~~~~~~~~~t~~~~~~~~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~   82 (201)
T PRK04213          6 PDRKPEIVFVGRSNVGKSTLVRELTGKK--VRVGKRPGVTRKPNHYDWG-DFILTDLPGFGFMSGVPKEVQEKIKDEIVR   82 (201)
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCCC--CccCCCCceeeCceEEeec-ceEEEeCCccccccccCHHHHHHHHHHHHH
Confidence            3456899999999999999999999874  3355566777655443333 79999999975432111 123445555556


Q ss_pred             HHh-cccccceEEEEEeCCCCCC-----------cCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhc
Q 029158           97 YVS-TRVSLKRVCLLIDTKWGVK-----------PRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKAN  164 (198)
Q Consensus        97 ~~~-~~~~~d~vi~v~d~~~~~~-----------~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~  164 (198)
                      ++. ....++++++|+|++....           ..+.+++..+...++|+++|+||+|+....  .+..+.+.+.+...
T Consensus        83 ~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~~--~~~~~~~~~~~~~~  160 (201)
T PRK04213         83 YIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRELGIPPIVAVNKMDKIKNR--DEVLDEIAERLGLY  160 (201)
T ss_pred             HHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHcCCCeEEEEECccccCcH--HHHHHHHHHHhcCC
Confidence            654 4566899999999875211           112445566666689999999999997644  22223333333210


Q ss_pred             ---cCCCCCcEEeccCCCCChHHHHHHHHHhhccc
Q 029158          165 ---NSLVQPVMMVSSKSGAGIRSLRTVLSKIARFA  196 (198)
Q Consensus       165 ---~~~~~~v~~~Sa~~~~gi~~l~~~i~~~~~~~  196 (198)
                         .....+++++||++| |+++++++|.+.+...
T Consensus       161 ~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~~  194 (201)
T PRK04213        161 PPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHEA  194 (201)
T ss_pred             ccccccCCcEEEEecccC-CHHHHHHHHHHhhcCc
Confidence               011236899999999 9999999999877653

>cd04171 SelB SelB subfamily

Probab=99.95  E-value=1.6e-25  Score=156.70  Aligned_cols=155  Identities=28%  Similarity=0.383  Sum_probs=106.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCccceee--cCCCCceeEEEEEE---e-CCceEEEeCCCCccccchhHHHHHHHHHHHH
Q 029158           23 EIAFAGRSNVGKSSMLNALTRQWGVVRT--SDKPGLTQTINFFK---L-GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE   96 (198)
Q Consensus        23 ~v~~vG~~~~GKSsli~~l~~~~~~~~~--~~~~~~t~~~~~~~---~-~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~   96 (198)
                      .|+++|.+|+|||||+++|.+.. ....  ...+++|.+..+..   . +..+.+|||||.             ..+...
T Consensus         2 ~i~i~G~~~~GKssl~~~l~~~~-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~-------------~~~~~~   67 (164)
T cd04171           2 IIGTAGHIDHGKTTLIKALTGIE-TDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGH-------------EKFIKN   67 (164)
T ss_pred             EEEEEecCCCCHHHHHHHHhCcc-cccchhhhccCceEEeeeEEEEecCCcEEEEEECCCh-------------HHHHHH
Confidence            58999999999999999999752 1111  11234555443221   1 568999999996             222233


Q ss_pred             HHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCC-cEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEec
Q 029158           97 YVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQT-KYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVS  175 (198)
Q Consensus        97 ~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~-p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~S  175 (198)
                      +......+|++++|+|+++++.....+.+..+...+. |+++|+||+|+..........+.+.+.+........+++++|
T Consensus        68 ~~~~~~~ad~ii~V~d~~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  147 (164)
T cd04171          68 MLAGAGGIDLVLLVVAADEGIMPQTREHLEILELLGIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVS  147 (164)
T ss_pred             HHhhhhcCCEEEEEEECCCCccHhHHHHHHHHHHhCCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEe
Confidence            3344455999999999987655555555555554454 999999999998754444444555555543222357899999


Q ss_pred             cCCCCChHHHHHHHHH
Q 029158          176 SKSGAGIRSLRTVLSK  191 (198)
Q Consensus       176 a~~~~gi~~l~~~i~~  191 (198)
                      |++++|++++++++.+
T Consensus       148 a~~~~~v~~l~~~l~~  163 (164)
T cd04171         148 AVTGEGIEELKEYLDE  163 (164)
T ss_pred             CCCCcCHHHHHHHHhh
Confidence            9999999999998864

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>PRK15494 era GTPase Era; Provisional

Probab=99.94  E-value=1.1e-25  Score=174.04  Aligned_cols=164  Identities=22%  Similarity=0.214  Sum_probs=118.2

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE---EEEeCCceEEEeCCCCccccchhHHHHHHHHHHHH
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE   96 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~---~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~   96 (198)
                      ...+|+++|.+|+|||||+|+|++. .+..+++.+.+|++..   +...+.++.+|||||+.+....     ....+.+.
T Consensus        51 k~~kV~ivG~~nvGKSTLin~l~~~-k~~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~-----l~~~~~r~  124 (339)
T PRK15494         51 KTVSVCIIGRPNSGKSTLLNRIIGE-KLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKGS-----LEKAMVRC  124 (339)
T ss_pred             ceeEEEEEcCCCCCHHHHHHHHhCC-ceeeccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCccc-----HHHHHHHH
Confidence            3458999999999999999999988 5566677777776532   2233678999999998543211     11233344


Q ss_pred             HHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEecc
Q 029158           97 YVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSS  176 (198)
Q Consensus        97 ~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa  176 (198)
                      .......+|++++|+|+..++...+..+++.+...+.|.++|+||+|+... ...    .+.+.+... ....+++++||
T Consensus       125 ~~~~l~~aDvil~VvD~~~s~~~~~~~il~~l~~~~~p~IlViNKiDl~~~-~~~----~~~~~l~~~-~~~~~i~~iSA  198 (339)
T PRK15494        125 AWSSLHSADLVLLIIDSLKSFDDITHNILDKLRSLNIVPIFLLNKIDIESK-YLN----DIKAFLTEN-HPDSLLFPISA  198 (339)
T ss_pred             HHHHhhhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEEhhcCccc-cHH----HHHHHHHhc-CCCcEEEEEec
Confidence            444445699999999998877766667777777777889999999999753 222    222222211 22367999999


Q ss_pred             CCCCChHHHHHHHHHhhcc
Q 029158          177 KSGAGIRSLRTVLSKIARF  195 (198)
Q Consensus       177 ~~~~gi~~l~~~i~~~~~~  195 (198)
                      ++|.|+++++++|.+.++.
T Consensus       199 ktg~gv~eL~~~L~~~l~~  217 (339)
T PRK15494        199 LSGKNIDGLLEYITSKAKI  217 (339)
T ss_pred             cCccCHHHHHHHHHHhCCC
Confidence            9999999999999988764

>cd01889 SelB_euk SelB subfamily

Probab=99.94  E-value=1.8e-25  Score=160.63  Aligned_cols=161  Identities=23%  Similarity=0.340  Sum_probs=113.2

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCcc-----ceeecCCCCceeEEEE-----E------------EeCCceEEEeCCCCcc
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQWG-----VVRTSDKPGLTQTINF-----F------------KLGTKLCLVDLPGYGF   79 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~~~-----~~~~~~~~~~t~~~~~-----~------------~~~~~~~iiDtpG~~~   79 (198)
                      .+|+++|.+|+|||||+++|++...     .......+++|.+..+     .            ..+..+.+|||||+  
T Consensus         1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~--   78 (192)
T cd01889           1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGH--   78 (192)
T ss_pred             CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCc--
Confidence            3699999999999999999997310     0112223445554331     1            11568999999997  


Q ss_pred             ccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHH
Q 029158           80 AYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEE  159 (198)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~  159 (198)
                                 ..+.+.++.....+|++++|+|+..+....+.+.+......+.|+++|+||+|+......+...+.+++
T Consensus        79 -----------~~~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~  147 (192)
T cd01889          79 -----------ASLIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGEILCKKLIVVLNKIDLIPEEERERKIEKMKK  147 (192)
T ss_pred             -----------HHHHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECcccCCHHHHHHHHHHHHH
Confidence                       344556666666789999999999876555555444455557899999999999866554444444544


Q ss_pred             HHHh----ccCCCCCcEEeccCCCCChHHHHHHHHHhhcc
Q 029158          160 SLKA----NNSLVQPVMMVSSKSGAGIRSLRTVLSKIARF  195 (198)
Q Consensus       160 ~~~~----~~~~~~~v~~~Sa~~~~gi~~l~~~i~~~~~~  195 (198)
                      .+..    ......+++++||++|+|+++|++++.+....
T Consensus       148 ~l~~~~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~~  187 (192)
T cd01889         148 KLQKTLEKTRFKNSPIIPVSAKPGGGEAELGKDLNNLIVL  187 (192)
T ss_pred             HHHHHHHhcCcCCCCEEEEeccCCCCHHHHHHHHHhcccc
Confidence            3322    12335789999999999999999999987654

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>PRK00089 era GTPase Era; Reviewed

Probab=99.94  E-value=3e-25  Score=169.19  Aligned_cols=164  Identities=24%  Similarity=0.287  Sum_probs=120.4

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE--EEE-eCCceEEEeCCCCccccchhHHHHHHHHHHHH
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FFK-LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE   96 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~--~~~-~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~   96 (198)
                      ....|+++|.+|+|||||+|+|++. .+..+++.+.||+...  +.. .+.++.++||||+.+..  ....   ..+...
T Consensus         4 ~~g~V~iiG~pn~GKSTLin~L~g~-~~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~--~~l~---~~~~~~   77 (292)
T PRK00089          4 KSGFVAIVGRPNVGKSTLLNALVGQ-KISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPK--RALN---RAMNKA   77 (292)
T ss_pred             eeEEEEEECCCCCCHHHHHHHHhCC-ceeecCCCCCcccccEEEEEEcCCceEEEEECCCCCCch--hHHH---HHHHHH
Confidence            3456999999999999999999998 6677777787776543  222 34789999999986532  1111   222333


Q ss_pred             HHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCC-CcHHHHHHHHHHHHHHHhccCCCCCcEEec
Q 029158           97 YVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV-FPIDVARRAMQIEESLKANNSLVQPVMMVS  175 (198)
Q Consensus        97 ~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~S  175 (198)
                      .......+|++++|+|+++.+...+..+++.+...+.|+++|+||+|+. .........+.+.+.     ....+++++|
T Consensus        78 ~~~~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~-----~~~~~i~~iS  152 (292)
T PRK00089         78 AWSSLKDVDLVLFVVDADEKIGPGDEFILEKLKKVKTPVILVLNKIDLVKDKEELLPLLEELSEL-----MDFAEIVPIS  152 (292)
T ss_pred             HHHHHhcCCEEEEEEeCCCCCChhHHHHHHHHhhcCCCEEEEEECCcCCCCHHHHHHHHHHHHhh-----CCCCeEEEec
Confidence            3344455999999999998767777777777776679999999999998 434444444444332     1246899999


Q ss_pred             cCCCCChHHHHHHHHHhhc
Q 029158          176 SKSGAGIRSLRTVLSKIAR  194 (198)
Q Consensus       176 a~~~~gi~~l~~~i~~~~~  194 (198)
                      |+++.|++++++++.+.++
T Consensus       153 A~~~~gv~~L~~~L~~~l~  171 (292)
T PRK00089        153 ALKGDNVDELLDVIAKYLP  171 (292)
T ss_pred             CCCCCCHHHHHHHHHHhCC
Confidence            9999999999999998875

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=99.94  E-value=2e-25  Score=159.80  Aligned_cols=161  Identities=27%  Similarity=0.452  Sum_probs=120.5

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCccce-e---------------ecCCCCceeE---EEEE--EeCCceEEEeCCCCc
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQWGVV-R---------------TSDKPGLTQT---INFF--KLGTKLCLVDLPGYG   78 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~-~---------------~~~~~~~t~~---~~~~--~~~~~~~iiDtpG~~   78 (198)
                      ..++|+++|+.++|||||+++|+...... .               .....+.|..   ..+.  .....+.++||||+ 
T Consensus         2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~-   80 (188)
T PF00009_consen    2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGH-   80 (188)
T ss_dssp             TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSS-
T ss_pred             CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeecccccc-
Confidence            35689999999999999999999642100 0               0001122322   2344  45678999999997 


Q ss_pred             cccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHH
Q 029158           79 FAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIE  158 (198)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~  158 (198)
                                  .++..+.......+|++++|+|+..++.....+.+..+...+.|+++|+||+|+. ..+..+..+++.
T Consensus        81 ------------~~f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~~~p~ivvlNK~D~~-~~~~~~~~~~~~  147 (188)
T PF00009_consen   81 ------------EDFIKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILRELGIPIIVVLNKMDLI-EKELEEIIEEIK  147 (188)
T ss_dssp             ------------HHHHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHTT-SEEEEEETCTSS-HHHHHHHHHHHH
T ss_pred             ------------cceeecccceecccccceeeeecccccccccccccccccccccceEEeeeeccch-hhhHHHHHHHHH
Confidence                        4556666677778999999999999988888999999999999999999999999 555566666666


Q ss_pred             HHH-HhccC---CCCCcEEeccCCCCChHHHHHHHHHhhc
Q 029158          159 ESL-KANNS---LVQPVMMVSSKSGAGIRSLRTVLSKIAR  194 (198)
Q Consensus       159 ~~~-~~~~~---~~~~v~~~Sa~~~~gi~~l~~~i~~~~~  194 (198)
                      +.+ .....   ...|++++||.+|+|+++|++.|.++++
T Consensus       148 ~~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P  187 (188)
T PF00009_consen  148 EKLLKEYGENGEEIVPVIPISALTGDGIDELLEALVELLP  187 (188)
T ss_dssp             HHHHHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred             HHhccccccCccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence            444 22222   2478999999999999999999998875

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>PRK12297 obgE GTPase CgtA; Reviewed

Probab=99.94  E-value=3.1e-25  Score=174.52  Aligned_cols=178  Identities=16%  Similarity=0.198  Sum_probs=125.6

Q ss_pred             CccceeeccCCcCCCCCCCCC--------------eEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEe--
Q 029158            2 NKLEFFAAAKVSSSFPAPDLP--------------EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL--   65 (198)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~--------------~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~--   65 (198)
                      .+.+|.++.......+....+              .|+++|.||+|||||+++|++.+  ..+++++.||....+...  
T Consensus       125 gn~~F~~s~~~~p~~~~~G~~ge~~~~~lelk~~adVglVG~pNaGKSTLLn~Lt~ak--~kIa~ypfTTl~PnlG~v~~  202 (424)
T PRK12297        125 GNAHFATSTNQAPRIAENGEPGEERELRLELKLLADVGLVGFPNVGKSTLLSVVSNAK--PKIANYHFTTLVPNLGVVET  202 (424)
T ss_pred             CchhhcCCCCCCCCcCCCCCCCeEeEEEEeecccCcEEEEcCCCCCHHHHHHHHHcCC--CccccCCcceeceEEEEEEE
Confidence            355666666666666666666              99999999999999999999874  557789999987664432  


Q ss_pred             --CCceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCC----CCcCcHHHHHHHHh-----hCCc
Q 029158           66 --GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG----VKPRDHELISLMER-----SQTK  134 (198)
Q Consensus        66 --~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~----~~~~~~~~~~~~~~-----~~~p  134 (198)
                        +..+.++||||+.+.....      ..+...|+.....++++++|+|++..    +......+.+.+..     .++|
T Consensus       203 ~~~~~~~laD~PGliega~~~------~gLg~~fLrhier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP  276 (424)
T PRK12297        203 DDGRSFVMADIPGLIEGASEG------VGLGHQFLRHIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERP  276 (424)
T ss_pred             eCCceEEEEECCCCccccccc------chHHHHHHHHHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCc
Confidence              5789999999986543211      23445566666679999999999752    11112234444443     3689


Q ss_pred             EEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEeccCCCCChHHHHHHHHHhhccc
Q 029158          135 YQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIARFA  196 (198)
Q Consensus       135 ~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~~~gi~~l~~~i~~~~~~~  196 (198)
                      +++|+||+|+....   +..+.+.+.+      ..+++++||++++|+++|+++|.+.+...
T Consensus       277 ~IVV~NK~DL~~~~---e~l~~l~~~l------~~~i~~iSA~tgeGI~eL~~~L~~~l~~~  329 (424)
T PRK12297        277 QIVVANKMDLPEAE---ENLEEFKEKL------GPKVFPISALTGQGLDELLYAVAELLEET  329 (424)
T ss_pred             EEEEEeCCCCcCCH---HHHHHHHHHh------CCcEEEEeCCCCCCHHHHHHHHHHHHHhC
Confidence            99999999985432   1122232222      15799999999999999999998877543

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=99.94  E-value=3.3e-25  Score=155.80  Aligned_cols=159  Identities=23%  Similarity=0.229  Sum_probs=104.9

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEE---eCCceEEEeCCCCccccchhHHHHHHHHHHHHHH
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV   98 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~   98 (198)
                      |+|+++|.+|+|||||+++|++..  ....+++++|.......   .+.++.+|||||+.+.....  ...+........
T Consensus         1 ~~i~~~G~~~~GKssli~~l~~~~--~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~--~~~~~~~~~~~~   76 (168)
T cd01897           1 PTLVIAGYPNVGKSSLVNKLTRAK--PEVAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEE--RNTIEMQAITAL   76 (168)
T ss_pred             CeEEEEcCCCCCHHHHHHHHhcCC--CccCCCCCcccceeEEEEccCceEEEEEECCCcCCccccC--CchHHHHHHHHH
Confidence            689999999999999999999974  23445566676655433   24689999999985421111  001111111111


Q ss_pred             hcccccceEEEEEeCCCCCCc---CcHHHHHHHHhh--CCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEE
Q 029158           99 STRVSLKRVCLLIDTKWGVKP---RDHELISLMERS--QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMM  173 (198)
Q Consensus        99 ~~~~~~d~vi~v~d~~~~~~~---~~~~~~~~~~~~--~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  173 (198)
                      .  ..+|++++|+|++.....   ...+++..+...  +.|+++|+||+|+.......+    .++. ..  ....++++
T Consensus        77 ~--~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~----~~~~-~~--~~~~~~~~  147 (168)
T cd01897          77 A--HLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKIDLLTFEDLSE----IEEE-EE--LEGEEVLK  147 (168)
T ss_pred             H--hccCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCCeEEEEEccccCchhhHHH----HHHh-hh--hccCceEE
Confidence            1  125889999999864321   123455556544  799999999999987554433    1111 11  12578999


Q ss_pred             eccCCCCChHHHHHHHHHhh
Q 029158          174 VSSKSGAGIRSLRTVLSKIA  193 (198)
Q Consensus       174 ~Sa~~~~gi~~l~~~i~~~~  193 (198)
                      +||++|+|++++++++.+.+
T Consensus       148 ~Sa~~~~gi~~l~~~l~~~~  167 (168)
T cd01897         148 ISTLTEEGVDEVKNKACELL  167 (168)
T ss_pred             EEecccCCHHHHHHHHHHHh
Confidence            99999999999999998765

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>cd01894 EngA1 EngA1 subfamily

Probab=99.94  E-value=5.1e-25  Score=152.95  Aligned_cols=153  Identities=23%  Similarity=0.324  Sum_probs=110.7

Q ss_pred             EEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEE---eCCceEEEeCCCCccccchhHHHHHHHHHHHHHHhcc
Q 029158           25 AFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTR  101 (198)
Q Consensus        25 ~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~  101 (198)
                      +++|.+|+|||||+++|++. ......+.+++|.+.....   .+..+.+|||||+.+...     .....+...+....
T Consensus         1 ~l~G~~~~GKssl~~~l~~~-~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~-----~~~~~~~~~~~~~~   74 (157)
T cd01894           1 AIVGRPNVGKSTLFNRLTGR-RDAIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDE-----GISKEIREQAELAI   74 (157)
T ss_pred             CccCCCCCCHHHHHHHHhCC-cEEeecCCCCceeCceeEEEEECCeEEEEEECCCCCCchh-----HHHHHHHHHHHHHH
Confidence            47899999999999999987 4455667777776544322   357799999999865321     11122222333334


Q ss_pred             cccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEeccCCCCC
Q 029158          102 VSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAG  181 (198)
Q Consensus       102 ~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~~~g  181 (198)
                      ..+|++++|+|+.++....+.++.+.+...+.|+++|+||+|+......       ...+...  ...+++++|++++.|
T Consensus        75 ~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~-------~~~~~~~--~~~~~~~~Sa~~~~g  145 (157)
T cd01894          75 EEADVILFVVDGREGLTPADEEIAKYLRKSKKPVILVVNKVDNIKEEDE-------AAEFYSL--GFGEPIPISAEHGRG  145 (157)
T ss_pred             HhCCEEEEEEeccccCCccHHHHHHHHHhcCCCEEEEEECcccCChHHH-------HHHHHhc--CCCCeEEEecccCCC
Confidence            4589999999998877777777777787778999999999999875433       1111111  123789999999999


Q ss_pred             hHHHHHHHHHh
Q 029158          182 IRSLRTVLSKI  192 (198)
Q Consensus       182 i~~l~~~i~~~  192 (198)
                      +++++++|.+.
T Consensus       146 v~~l~~~l~~~  156 (157)
T cd01894         146 IGDLLDAILEL  156 (157)
T ss_pred             HHHHHHHHHhh
Confidence            99999999875

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.94  E-value=1.3e-25  Score=173.49  Aligned_cols=169  Identities=27%  Similarity=0.338  Sum_probs=133.6

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEE---EEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHH
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---NFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE   96 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~---~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~   96 (198)
                      ...+|+++|.|++|||||+|+|+++ ....+++.++||++.   .+...+..+.++||+|+.....-.+..+  ..-...
T Consensus       177 ~~ikiaiiGrPNvGKSsLiN~ilge-eR~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E--~~Sv~r  253 (444)
T COG1160         177 DPIKIAIIGRPNVGKSSLINAILGE-ERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVE--KYSVAR  253 (444)
T ss_pred             CceEEEEEeCCCCCchHHHHHhccC-ceEEecCCCCccccceeeeEEECCeEEEEEECCCCCcccccccceE--EEeehh
Confidence            5789999999999999999999999 568899999999884   3555588899999999844211111000  011122


Q ss_pred             HHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCc--HHHHHHHHHHHHHHHhccCCCCCcEEe
Q 029158           97 YVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFP--IDVARRAMQIEESLKANNSLVQPVMMV  174 (198)
Q Consensus        97 ~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~  174 (198)
                      -++....+|.+++|+|+.+++.+++......+.+.+.++++|+||||+...  ...++....+...+....  ..|++++
T Consensus       254 t~~aI~~a~vvllviDa~~~~~~qD~~ia~~i~~~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~--~a~i~~i  331 (444)
T COG1160         254 TLKAIERADVVLLVIDATEGISEQDLRIAGLIEEAGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLD--FAPIVFI  331 (444)
T ss_pred             hHhHHhhcCEEEEEEECCCCchHHHHHHHHHHHHcCCCeEEEEEccccCCchhhHHHHHHHHHHHHhcccc--CCeEEEE
Confidence            333444589999999999999999999999999999999999999999886  455666677777655433  6899999


Q ss_pred             ccCCCCChHHHHHHHHHhh
Q 029158          175 SSKSGAGIRSLRTVLSKIA  193 (198)
Q Consensus       175 Sa~~~~gi~~l~~~i~~~~  193 (198)
                      ||++|.|++++++.+.+..
T Consensus       332 SA~~~~~i~~l~~~i~~~~  350 (444)
T COG1160         332 SALTGQGLDKLFEAIKEIY  350 (444)
T ss_pred             EecCCCChHHHHHHHHHHH
Confidence            9999999999999988754

>cd01895 EngA2 EngA2 subfamily

Probab=99.93  E-value=2.2e-24  Score=152.01  Aligned_cols=167  Identities=27%  Similarity=0.308  Sum_probs=116.4

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE---EEEeCCceEEEeCCCCccccchhHHHHHHHHHHHHH
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY   97 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~---~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~   97 (198)
                      .++|+++|.+|+|||||+++|++. ......+.++++....   +...+.++.+|||||+.+........+.+.  ....
T Consensus         2 ~~~i~i~G~~~~GKstli~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~--~~~~   78 (174)
T cd01895           2 PIRIAIIGRPNVGKSSLVNALLGE-ERVIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYS--VLRT   78 (174)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHhCc-cceeccCCCCCccCceeeEEEECCeeEEEEECCCCccccchhccHHHHH--HHHH
Confidence            568999999999999999999987 3344455566655432   223456799999999865422111111111  1122


Q ss_pred             HhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCc--HHHHHHHHHHHHHHHhccCCCCCcEEec
Q 029158           98 VSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFP--IDVARRAMQIEESLKANNSLVQPVMMVS  175 (198)
Q Consensus        98 ~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~S  175 (198)
                      +.....+|++++|+|+..+.......++..+...+.|+++++||+|+...  ...+...+.+++.+..  ....+++++|
T Consensus        79 ~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~S  156 (174)
T cd01895          79 LKAIERADVVLLVIDATEGITEQDLRIAGLILEEGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPF--LDYAPIVFIS  156 (174)
T ss_pred             HHHHhhcCeEEEEEeCCCCcchhHHHHHHHHHhcCCCEEEEEeccccCCccHHHHHHHHHHHHhhccc--ccCCceEEEe
Confidence            23334589999999999877766666677776678999999999999876  3444445555544332  1247899999


Q ss_pred             cCCCCChHHHHHHHHHh
Q 029158          176 SKSGAGIRSLRTVLSKI  192 (198)
Q Consensus       176 a~~~~gi~~l~~~i~~~  192 (198)
                      |++++|++++++++.+.
T Consensus       157 a~~~~~i~~~~~~l~~~  173 (174)
T cd01895         157 ALTGQGVDKLFDAIDEV  173 (174)
T ss_pred             ccCCCCHHHHHHHHHHh
Confidence            99999999999998764

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>COG0486 ThdF Predicted GTPase [General function prediction only]

Probab=99.93  E-value=2.9e-25  Score=172.01  Aligned_cols=158  Identities=25%  Similarity=0.280  Sum_probs=123.1

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEE---eCCceEEEeCCCCccccchhHHHHHHHHHHHHH
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY   97 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~   97 (198)
                      ..+++++|.||+|||||+|+|++. ..+.+++.+|||+|+-..+   .+.++.++||+|+.++...-+     ..-++..
T Consensus       217 G~kvvIiG~PNvGKSSLLNaL~~~-d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE-----~iGIeRs  290 (454)
T COG0486         217 GLKVVIIGRPNVGKSSLLNALLGR-DRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVE-----RIGIERA  290 (454)
T ss_pred             CceEEEECCCCCcHHHHHHHHhcC-CceEecCCCCCccceEEEEEEECCEEEEEEecCCcccCccHHH-----HHHHHHH
Confidence            468999999999999999999998 7899999999999975333   378999999999976532221     1113334


Q ss_pred             HhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEeccC
Q 029158           98 VSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSK  177 (198)
Q Consensus        98 ~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~  177 (198)
                      .+....||+++||+|+++.+...+...+. ....+.|+++|+||.|+..+......          ......+++.+|++
T Consensus       291 ~~~i~~ADlvL~v~D~~~~~~~~d~~~~~-~~~~~~~~i~v~NK~DL~~~~~~~~~----------~~~~~~~~i~iSa~  359 (454)
T COG0486         291 KKAIEEADLVLFVLDASQPLDKEDLALIE-LLPKKKPIIVVLNKADLVSKIELESE----------KLANGDAIISISAK  359 (454)
T ss_pred             HHHHHhCCEEEEEEeCCCCCchhhHHHHH-hcccCCCEEEEEechhcccccccchh----------hccCCCceEEEEec
Confidence            44445599999999999987788877777 44557999999999999986542211          01223579999999


Q ss_pred             CCCChHHHHHHHHHhhcc
Q 029158          178 SGAGIRSLRTVLSKIARF  195 (198)
Q Consensus       178 ~~~gi~~l~~~i~~~~~~  195 (198)
                      +++|+++|.+.|...+..
T Consensus       360 t~~Gl~~L~~~i~~~~~~  377 (454)
T COG0486         360 TGEGLDALREAIKQLFGK  377 (454)
T ss_pred             CccCHHHHHHHHHHHHhh
Confidence            999999999999987654

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=99.93  E-value=1.3e-24  Score=152.75  Aligned_cols=157  Identities=22%  Similarity=0.295  Sum_probs=106.0

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEE------eCCceEEEeCCCCccccchhHHHHHHHHHHH
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK------LGTKLCLVDLPGYGFAYAKEEVKDAWEELVK   95 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~------~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~   95 (198)
                      |.|+++|.+|+|||||+++|.+.. .. ....+++|.......      .+..+.+|||||...          +..+..
T Consensus         1 ~~i~iiG~~~~GKtsli~~l~~~~-~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~----------~~~~~~   68 (168)
T cd01887           1 PVVTVMGHVDHGKTTLLDKIRKTN-VA-AGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEA----------FTNMRA   68 (168)
T ss_pred             CEEEEEecCCCCHHHHHHHHHhcc-cc-cccCCCeEEeeccEEEecccCCcceEEEEeCCCcHH----------HHHHHH
Confidence            569999999999999999999873 22 222334554433111      246799999999622          112222


Q ss_pred             HHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHh---ccCCCCCcE
Q 029158           96 EYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKA---NNSLVQPVM  172 (198)
Q Consensus        96 ~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~---~~~~~~~v~  172 (198)
                      .++   ..+|++++|+|++++......+.+..+...++|+++|+||+|+..... +.....+.+....   ......+++
T Consensus        69 ~~~---~~~d~il~v~d~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  144 (168)
T cd01887          69 RGA---SLTDIAILVVAADDGVMPQTIEAIKLAKAANVPFIVALNKIDKPNANP-ERVKNELSELGLQGEDEWGGDVQIV  144 (168)
T ss_pred             HHH---hhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEEceecccccH-HHHHHHHHHhhccccccccCcCcEE
Confidence            222   348999999999886555555566667777899999999999975421 1222222221111   122357899


Q ss_pred             EeccCCCCChHHHHHHHHHhhc
Q 029158          173 MVSSKSGAGIRSLRTVLSKIAR  194 (198)
Q Consensus       173 ~~Sa~~~~gi~~l~~~i~~~~~  194 (198)
                      ++||++|+|+++++++|.++..
T Consensus       145 ~~Sa~~~~gi~~l~~~l~~~~~  166 (168)
T cd01887         145 PTSAKTGEGIDDLLEAILLLAE  166 (168)
T ss_pred             EeecccCCCHHHHHHHHHHhhh
Confidence            9999999999999999998764

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.93  E-value=2.1e-24  Score=172.91  Aligned_cols=170  Identities=25%  Similarity=0.293  Sum_probs=127.0

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE---EEEeCCceEEEeCCCCccccchhHHHHHHHHHHH
Q 029158           19 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVK   95 (198)
Q Consensus        19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~---~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~   95 (198)
                      ....+|+++|.+|+|||||+|+|++. .....++.+++|.+..   +...+..+.++||||+..........+.+.  ..
T Consensus       171 ~~~~~v~ivG~~n~GKStlin~ll~~-~~~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~--~~  247 (435)
T PRK00093        171 DEPIKIAIIGRPNVGKSSLINALLGE-ERVIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYS--VI  247 (435)
T ss_pred             ccceEEEEECCCCCCHHHHHHHHhCC-CceeecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHH--HH
Confidence            35689999999999999999999987 4566778888888753   333467899999999855322221111111  12


Q ss_pred             HHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEec
Q 029158           96 EYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVS  175 (198)
Q Consensus        96 ~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~S  175 (198)
                      ..+.....+|++++|+|+..+....+..++..+...++|+++|+||+|+.+.....+..+.+...+...  ...|++++|
T Consensus       248 ~~~~~~~~ad~~ilViD~~~~~~~~~~~i~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~~--~~~~i~~~S  325 (435)
T PRK00093        248 RTLKAIERADVVLLVIDATEGITEQDLRIAGLALEAGRALVIVVNKWDLVDEKTMEEFKKELRRRLPFL--DYAPIVFIS  325 (435)
T ss_pred             HHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCcEEEEEECccCCCHHHHHHHHHHHHHhcccc--cCCCEEEEe
Confidence            223344558999999999998888888888888888899999999999986655555555555544322  358999999


Q ss_pred             cCCCCChHHHHHHHHHhh
Q 029158          176 SKSGAGIRSLRTVLSKIA  193 (198)
Q Consensus       176 a~~~~gi~~l~~~i~~~~  193 (198)
                      |++|.|++++++.+.+..
T Consensus       326 A~~~~gv~~l~~~i~~~~  343 (435)
T PRK00093        326 ALTGQGVDKLLEAIDEAY  343 (435)
T ss_pred             CCCCCCHHHHHHHHHHHH
Confidence            999999999999987754

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.93  E-value=1.6e-24  Score=173.38  Aligned_cols=171  Identities=24%  Similarity=0.292  Sum_probs=124.3

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE---EEEeCCceEEEeCCCCccccchhHHHHHHHHHHH
Q 029158           19 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVK   95 (198)
Q Consensus        19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~---~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~   95 (198)
                      ....+|+++|.+|+|||||+|+|++. ......+.+++|.+..   +...+..+.+|||||+..........+.+.  ..
T Consensus       170 ~~~~~v~ivG~~~~GKSsLin~l~~~-~~~~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~--~~  246 (429)
T TIGR03594       170 DGPIKIAIIGRPNVGKSTLVNALLGE-ERVIVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYS--VL  246 (429)
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHCC-CeeecCCCCCceECcEeEEEEECCcEEEEEECCCccccccchhhHHHHH--HH
Confidence            34578999999999999999999987 4455677888887643   323456899999999854322111111111  11


Q ss_pred             HHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCC-CcHHHHHHHHHHHHHHHhccCCCCCcEEe
Q 029158           96 EYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV-FPIDVARRAMQIEESLKANNSLVQPVMMV  174 (198)
Q Consensus        96 ~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  174 (198)
                      ..+.....+|++++|+|+.++....+.+++..+...++|+++|+||+|+. .....++....+.+.+...  ...+++++
T Consensus       247 ~~~~~~~~ad~~ilV~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~--~~~~vi~~  324 (429)
T TIGR03594       247 RTLKAIERADVVLLVLDATEGITEQDLRIAGLILEAGKALVIVVNKWDLVKDEKTREEFKKELRRKLPFL--DFAPIVFI  324 (429)
T ss_pred             HHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEECcccCCCHHHHHHHHHHHHHhcccC--CCCceEEE
Confidence            22233445999999999999888888888888887789999999999998 4444445555555443322  24799999


Q ss_pred             ccCCCCChHHHHHHHHHhhc
Q 029158          175 SSKSGAGIRSLRTVLSKIAR  194 (198)
Q Consensus       175 Sa~~~~gi~~l~~~i~~~~~  194 (198)
                      ||++|.|++++++++.+.+.
T Consensus       325 SA~~g~~v~~l~~~i~~~~~  344 (429)
T TIGR03594       325 SALTGQGVDKLLDAIDEVYE  344 (429)
T ss_pred             eCCCCCCHHHHHHHHHHHHH
Confidence            99999999999999887654

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>cd04163 Era Era subfamily

Probab=99.93  E-value=3e-24  Score=150.24  Aligned_cols=161  Identities=26%  Similarity=0.308  Sum_probs=113.8

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE---EEEeCCceEEEeCCCCccccchhHHHHHHHHHHHHH
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY   97 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~---~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~   97 (198)
                      ..+|+++|++|+|||||++++++. ......+...++....   ....+..+.+|||||+.+.....  .+.   +....
T Consensus         3 ~~~i~~~G~~g~GKttl~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~--~~~---~~~~~   76 (168)
T cd04163           3 SGFVAIVGRPNVGKSTLLNALVGQ-KISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKL--GER---MVKAA   76 (168)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCC-ceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHH--HHH---HHHHH
Confidence            467999999999999999999987 5555555555554432   12224679999999986542211  111   22222


Q ss_pred             HhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCC-cHHHHHHHHHHHHHHHhccCCCCCcEEecc
Q 029158           98 VSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF-PIDVARRAMQIEESLKANNSLVQPVMMVSS  176 (198)
Q Consensus        98 ~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa  176 (198)
                      ......+|++++++|+..........+...+...+.|+++|+||+|+.. .....+....++..     ....+++++|+
T Consensus        77 ~~~~~~~d~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~~s~  151 (168)
T cd04163          77 WSALKDVDLVLFVVDASEPIGEGDEFILELLKKSKTPVILVLNKIDLVKDKEDLLPLLEKLKEL-----GPFAEIFPISA  151 (168)
T ss_pred             HHHHHhCCEEEEEEECCCccCchHHHHHHHHHHhCCCEEEEEEchhccccHHHHHHHHHHHHhc-----cCCCceEEEEe
Confidence            2333458999999999987566666777777777899999999999983 44444444444332     22468999999


Q ss_pred             CCCCChHHHHHHHHHh
Q 029158          177 KSGAGIRSLRTVLSKI  192 (198)
Q Consensus       177 ~~~~gi~~l~~~i~~~  192 (198)
                      +++.|+++++++|.+.
T Consensus       152 ~~~~~~~~l~~~l~~~  167 (168)
T cd04163         152 LKGENVDELLEEIVKY  167 (168)
T ss_pred             ccCCChHHHHHHHHhh
Confidence            9999999999999875

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=99.93  E-value=1.2e-24  Score=170.20  Aligned_cols=161  Identities=22%  Similarity=0.257  Sum_probs=112.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEe---C-CceEEEeCCCCccccchhHHHHHHHHHHHHHH
Q 029158           23 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---G-TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV   98 (198)
Q Consensus        23 ~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~-~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~   98 (198)
                      .|+++|.||+|||||+|+|++..  ..+++++.||+.......   + ..+.++||||+.+.....      ..+...++
T Consensus       161 dValVG~PNaGKSTLln~Lt~~k--~~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~------~~Lg~~~l  232 (390)
T PRK12298        161 DVGLLGLPNAGKSTFIRAVSAAK--PKVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEG------AGLGIRFL  232 (390)
T ss_pred             cEEEEcCCCCCHHHHHHHHhCCc--ccccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccch------hhHHHHHH
Confidence            89999999999999999999874  578899999987553332   2 359999999986643221      11223344


Q ss_pred             hcccccceEEEEEeCCC----CCCcCcHHHHHHHHhh-----CCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCC
Q 029158           99 STRVSLKRVCLLIDTKW----GVKPRDHELISLMERS-----QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQ  169 (198)
Q Consensus        99 ~~~~~~d~vi~v~d~~~----~~~~~~~~~~~~~~~~-----~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  169 (198)
                      .....+|++++|+|++.    ........+++.+...     +.|+++|+||+|+....+..+....+.+..    ....
T Consensus       233 ~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el~~~l~~l~~~~----~~~~  308 (390)
T PRK12298        233 KHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEAEERAKAIVEAL----GWEG  308 (390)
T ss_pred             HHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHHHHHHHHHHHHh----CCCC
Confidence            45556999999999872    1112223445555442     589999999999986554433333333221    1124


Q ss_pred             CcEEeccCCCCChHHHHHHHHHhhcc
Q 029158          170 PVMMVSSKSGAGIRSLRTVLSKIARF  195 (198)
Q Consensus       170 ~v~~~Sa~~~~gi~~l~~~i~~~~~~  195 (198)
                      +++++||++++|+++++++|.+.+..
T Consensus       309 ~Vi~ISA~tg~GIdeLl~~I~~~L~~  334 (390)
T PRK12298        309 PVYLISAASGLGVKELCWDLMTFIEE  334 (390)
T ss_pred             CEEEEECCCCcCHHHHHHHHHHHhhh
Confidence            78999999999999999999987753

>cd01898 Obg Obg subfamily

Probab=99.93  E-value=5.5e-25  Score=154.93  Aligned_cols=158  Identities=21%  Similarity=0.252  Sum_probs=103.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEE---EEeCC-ceEEEeCCCCccccchhHHHHHHHHHHHHHH
Q 029158           23 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF---FKLGT-KLCLVDLPGYGFAYAKEEVKDAWEELVKEYV   98 (198)
Q Consensus        23 ~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~---~~~~~-~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~   98 (198)
                      .|+++|.+|+|||||+++|.+..  ..+...+++|.....   ...+. ++.+|||||+.+.....      ..+...++
T Consensus         2 ~v~ivG~~~~GKStl~~~l~~~~--~~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~------~~~~~~~~   73 (170)
T cd01898           2 DVGLVGLPNAGKSTLLSAISNAK--PKIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEG------KGLGHRFL   73 (170)
T ss_pred             CeEEECCCCCCHHHHHHHHhcCC--ccccCCCccccCCcceEEEcCCCCeEEEEecCcccCccccc------CCchHHHH
Confidence            58999999999999999999864  244555556654322   12234 89999999975321111      12223344


Q ss_pred             hcccccceEEEEEeCCCC-CCcCc-HHHHHHHHh-----hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCc
Q 029158           99 STRVSLKRVCLLIDTKWG-VKPRD-HELISLMER-----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPV  171 (198)
Q Consensus        99 ~~~~~~d~vi~v~d~~~~-~~~~~-~~~~~~~~~-----~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v  171 (198)
                      .....+|++++|+|+++. -.... ..+.+.+..     .+.|+++|+||+|+.......+.....   ....  ...++
T Consensus        74 ~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~---~~~~--~~~~~  148 (170)
T cd01898          74 RHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEELFELLKEL---LKEL--WGKPV  148 (170)
T ss_pred             HHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhhHHHHHHH---HhhC--CCCCE
Confidence            444458999999999864 11111 233444433     258999999999997765443322222   2211  24689


Q ss_pred             EEeccCCCCChHHHHHHHHHhh
Q 029158          172 MMVSSKSGAGIRSLRTVLSKIA  193 (198)
Q Consensus       172 ~~~Sa~~~~gi~~l~~~i~~~~  193 (198)
                      +++||+++.|+++++++|.+.+
T Consensus       149 ~~~Sa~~~~gi~~l~~~i~~~~  170 (170)
T cd01898         149 FPISALTGEGLDELLRKLAELL  170 (170)
T ss_pred             EEEecCCCCCHHHHHHHHHhhC
Confidence            9999999999999999998753

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.93  E-value=2.7e-24  Score=173.28  Aligned_cols=170  Identities=21%  Similarity=0.219  Sum_probs=120.6

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE---EEEeCCceEEEeCCCCccccchhHHHHHHHHHHHH
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE   96 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~---~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~   96 (198)
                      ..++|+++|.+|+|||||+|+|++. .....++.+++|.+..   +...+..+.+|||||+..........+.+..+.. 
T Consensus       210 ~~~kI~iiG~~nvGKSSLin~l~~~-~~~~~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~-  287 (472)
T PRK03003        210 GPRRVALVGKPNVGKSSLLNKLAGE-ERSVVDDVAGTTVDPVDSLIELGGKTWRFVDTAGLRRRVKQASGHEYYASLRT-  287 (472)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCC-CcccccCCCCccCCcceEEEEECCEEEEEEECCCccccccccchHHHHHHHHH-
Confidence            4689999999999999999999998 3445677888887642   3334667899999997432211111111111110 


Q ss_pred             HHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEecc
Q 029158           97 YVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSS  176 (198)
Q Consensus        97 ~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa  176 (198)
                       ......+|++++|+|++++....+..++..+...++|+|+|+||+|+............+.+.+..  ....+++++||
T Consensus       288 -~~~i~~ad~vilV~Da~~~~s~~~~~~~~~~~~~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~--~~~~~~~~~SA  364 (472)
T PRK03003        288 -HAAIEAAEVAVVLIDASEPISEQDQRVLSMVIEAGRALVLAFNKWDLVDEDRRYYLEREIDRELAQ--VPWAPRVNISA  364 (472)
T ss_pred             -HHHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCChhHHHHHHHHHHHhccc--CCCCCEEEEEC
Confidence             112234999999999999888778888888877789999999999998644333333333333322  22478999999


Q ss_pred             CCCCChHHHHHHHHHhhc
Q 029158          177 KSGAGIRSLRTVLSKIAR  194 (198)
Q Consensus       177 ~~~~gi~~l~~~i~~~~~  194 (198)
                      ++|.|++++++.+.+.+.
T Consensus       365 k~g~gv~~lf~~i~~~~~  382 (472)
T PRK03003        365 KTGRAVDKLVPALETALE  382 (472)
T ss_pred             CCCCCHHHHHHHHHHHHH
Confidence            999999999999988764

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=99.93  E-value=5.1e-24  Score=154.15  Aligned_cols=160  Identities=22%  Similarity=0.275  Sum_probs=111.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCc-cceeecCCCCceeEEE-----EE-------------------------EeC-----
Q 029158           23 EIAFAGRSNVGKSSMLNALTRQW-GVVRTSDKPGLTQTIN-----FF-------------------------KLG-----   66 (198)
Q Consensus        23 ~v~~vG~~~~GKSsli~~l~~~~-~~~~~~~~~~~t~~~~-----~~-------------------------~~~-----   66 (198)
                      +|+++|+.|+|||||+.+|.+.. .........+.+....     +.                         ..+     
T Consensus         2 ~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (203)
T cd01888           2 NIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETKL   81 (203)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCcccc
Confidence            68999999999999999997651 0000111111111111     00                         002     


Q ss_pred             -CceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCC-CCcCcHHHHHHHHhhCC-cEEEEEeccC
Q 029158           67 -TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG-VKPRDHELISLMERSQT-KYQVVLTKTD  143 (198)
Q Consensus        67 -~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~-~~~~~~~~~~~~~~~~~-p~iiv~nK~D  143 (198)
                       ..+.||||||+             ..+...++.....+|++++|+|+..+ ......+.+..+...+. |+++|+||+|
T Consensus        82 ~~~i~~iDtPG~-------------~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~~~~iiivvNK~D  148 (203)
T cd01888          82 VRHVSFVDCPGH-------------EILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMGLKHIIIVQNKID  148 (203)
T ss_pred             ccEEEEEECCCh-------------HHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcCCCcEEEEEEchh
Confidence             57899999996             45666777777789999999999874 34444556665655554 7899999999


Q ss_pred             CCCcHHHHHHHHHHHHHHHhccCCCCCcEEeccCCCCChHHHHHHHHHhhcc
Q 029158          144 TVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIARF  195 (198)
Q Consensus       144 l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~~~gi~~l~~~i~~~~~~  195 (198)
                      +..........+.+++.+........+++++||++|+|+++++++|.+.++.
T Consensus       149 l~~~~~~~~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~  200 (203)
T cd01888         149 LVKEEQALENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIPT  200 (203)
T ss_pred             ccCHHHHHHHHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCCC
Confidence            9876555555566666554433345789999999999999999999987654

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>cd00881 GTP_translation_factor GTP translation factor family

Probab=99.93  E-value=1.7e-24  Score=154.77  Aligned_cols=159  Identities=21%  Similarity=0.270  Sum_probs=111.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCccceee--------------cCCCCceeEEE---EEEeCCceEEEeCCCCccccchhH
Q 029158           23 EIAFAGRSNVGKSSMLNALTRQWGVVRT--------------SDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAKEE   85 (198)
Q Consensus        23 ~v~~vG~~~~GKSsli~~l~~~~~~~~~--------------~~~~~~t~~~~---~~~~~~~~~iiDtpG~~~~~~~~~   85 (198)
                      +|+++|.+|+|||||+++|++.......              ....+++....   ....+..+.+|||||+.+.     
T Consensus         1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~-----   75 (189)
T cd00881           1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDF-----   75 (189)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHH-----
Confidence            4899999999999999999987311111              01122333322   2222567999999996321     


Q ss_pred             HHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhcc
Q 029158           86 VKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANN  165 (198)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~  165 (198)
                           ......++   ..+|++++|+|+.++......+.+..+...+.|+++|+||+|+..+.+.....+.+++.+....
T Consensus        76 -----~~~~~~~~---~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~  147 (189)
T cd00881          76 -----SSEVIRGL---SVSDGAILVVDANEGVQPQTREHLRIAREGGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIG  147 (189)
T ss_pred             -----HHHHHHHH---HhcCEEEEEEECCCCCcHHHHHHHHHHHHCCCCeEEEEECCCCcchhcHHHHHHHHHHHHcccc
Confidence                 12222222   3499999999999876666666777777678999999999999986655555566665554432


Q ss_pred             -----------CCCCCcEEeccCCCCChHHHHHHHHHhhc
Q 029158          166 -----------SLVQPVMMVSSKSGAGIRSLRTVLSKIAR  194 (198)
Q Consensus       166 -----------~~~~~v~~~Sa~~~~gi~~l~~~i~~~~~  194 (198)
                                 ....+++++||++|.|++++++++...++
T Consensus       148 ~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~  187 (189)
T cd00881         148 FISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHLP  187 (189)
T ss_pred             ccchhhhhcccCCcceEEEEecccCcCHHHHHHHHHhhCC
Confidence                       23688999999999999999999998765

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>PRK12299 obgE GTPase CgtA; Reviewed

Probab=99.93  E-value=2.3e-24  Score=165.75  Aligned_cols=163  Identities=20%  Similarity=0.247  Sum_probs=114.1

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEE----eCCceEEEeCCCCccccchhHHHHHHHHHHHH
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK----LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE   96 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~----~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~   96 (198)
                      ...|+++|.||||||||+++|.+.+  ..+++++.||.......    ...++.++||||+.+.....      ..+..+
T Consensus       158 ~adVglVG~PNaGKSTLln~ls~a~--~~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~------~gLg~~  229 (335)
T PRK12299        158 LADVGLVGLPNAGKSTLISAVSAAK--PKIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEG------AGLGHR  229 (335)
T ss_pred             cCCEEEEcCCCCCHHHHHHHHHcCC--CccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCcc------ccHHHH
Confidence            3589999999999999999999874  56788999988765332    24579999999986543221      123345


Q ss_pred             HHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHh-----hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCC
Q 029158           97 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER-----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQP  170 (198)
Q Consensus        97 ~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~-----~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (198)
                      |+.....++++++|+|+++.....+ ..+...+..     .++|+++|+||+|+........  ...+....   ....+
T Consensus       230 flrhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~--~~~~~~~~---~~~~~  304 (335)
T PRK12299        230 FLKHIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEERE--KRAALELA---ALGGP  304 (335)
T ss_pred             HHHHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHH--HHHHHHHH---hcCCC
Confidence            5555666899999999986322222 234444443     2689999999999976543221  11111111   11368


Q ss_pred             cEEeccCCCCChHHHHHHHHHhhccc
Q 029158          171 VMMVSSKSGAGIRSLRTVLSKIARFA  196 (198)
Q Consensus       171 v~~~Sa~~~~gi~~l~~~i~~~~~~~  196 (198)
                      ++++||++++|+++++++|.+.+...
T Consensus       305 i~~iSAktg~GI~eL~~~L~~~l~~~  330 (335)
T PRK12299        305 VFLISAVTGEGLDELLRALWELLEEA  330 (335)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHhh
Confidence            99999999999999999999887654

>TIGR02729 Obg_CgtA Obg family GTPase CgtA

Probab=99.93  E-value=1.7e-24  Score=166.30  Aligned_cols=159  Identities=21%  Similarity=0.280  Sum_probs=111.1

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEe---C-CceEEEeCCCCccccchhHHHHHHHHHHHH
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---G-TKLCLVDLPGYGFAYAKEEVKDAWEELVKE   96 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~-~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~   96 (198)
                      ...|+++|.+|+|||||+++|.+..  ..+.+++.||...+....   + ..+.++||||+.+.....      ..+...
T Consensus       157 ~adV~lvG~pnaGKSTLl~~lt~~~--~~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~------~gLg~~  228 (329)
T TIGR02729       157 LADVGLVGLPNAGKSTLISAVSAAK--PKIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEG------AGLGHR  228 (329)
T ss_pred             cccEEEEcCCCCCHHHHHHHHhcCC--ccccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCccc------ccHHHH
Confidence            3689999999999999999999874  557888888876543222   3 689999999986543221      123334


Q ss_pred             HHhcccccceEEEEEeCCCCC---CcCc-HHHHHHHHh-----hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCC
Q 029158           97 YVSTRVSLKRVCLLIDTKWGV---KPRD-HELISLMER-----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSL  167 (198)
Q Consensus        97 ~~~~~~~~d~vi~v~d~~~~~---~~~~-~~~~~~~~~-----~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~  167 (198)
                      |++....++++++|+|++..-   ...+ ..+.+.+..     .++|+++|+||+|+......++..+.+.+..      
T Consensus       229 flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~~~~~~~~l~~~~------  302 (329)
T TIGR02729       229 FLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEELAELLKELKKAL------  302 (329)
T ss_pred             HHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHHHHHHHHHHHHHc------
Confidence            555555689999999998631   1111 223333432     2689999999999987654433333333221      


Q ss_pred             CCCcEEeccCCCCChHHHHHHHHHhh
Q 029158          168 VQPVMMVSSKSGAGIRSLRTVLSKIA  193 (198)
Q Consensus       168 ~~~v~~~Sa~~~~gi~~l~~~i~~~~  193 (198)
                      ..+++++||++++|+++++++|.+.+
T Consensus       303 ~~~vi~iSAktg~GI~eL~~~I~~~l  328 (329)
T TIGR02729       303 GKPVFPISALTGEGLDELLYALAELL  328 (329)
T ss_pred             CCcEEEEEccCCcCHHHHHHHHHHHh
Confidence            36899999999999999999998765

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=99.92  E-value=7.7e-24  Score=146.94  Aligned_cols=152  Identities=26%  Similarity=0.351  Sum_probs=108.4

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE---EEEeCCceEEEeCCCCccccchhHHHHHHHHHHHHHH
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV   98 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~---~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~   98 (198)
                      .+|+++|++|+|||||++++++. ......+.++++.+..   +...+..+.+|||||+.+......     ........
T Consensus         2 ~~i~l~G~~~~GKstli~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~-----~~~~~~~~   75 (157)
T cd04164           2 IKVVIVGKPNVGKSSLLNALAGR-DRAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDEIE-----KIGIERAR   75 (157)
T ss_pred             cEEEEECCCCCCHHHHHHHHHCC-ceEeccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCcchHH-----HHHHHHHH
Confidence            47999999999999999999987 4555667777776543   222356899999999865422111     11111222


Q ss_pred             hcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEeccCC
Q 029158           99 STRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKS  178 (198)
Q Consensus        99 ~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~  178 (198)
                      .....+|++++|+|++......+...+..  ..+.|+++|+||+|+.+....            .......+++++||++
T Consensus        76 ~~~~~~~~~v~v~d~~~~~~~~~~~~~~~--~~~~~vi~v~nK~D~~~~~~~------------~~~~~~~~~~~~Sa~~  141 (157)
T cd04164          76 EAIEEADLVLFVIDASRGLDEEDLEILEL--PADKPIIVVLNKSDLLPDSEL------------LSLLAGKPIIAISAKT  141 (157)
T ss_pred             HHHhhCCEEEEEEECCCCCCHHHHHHHHh--hcCCCEEEEEEchhcCCcccc------------ccccCCCceEEEECCC
Confidence            33345899999999997555555544443  447999999999999875432            1122357899999999


Q ss_pred             CCChHHHHHHHHHhh
Q 029158          179 GAGIRSLRTVLSKIA  193 (198)
Q Consensus       179 ~~gi~~l~~~i~~~~  193 (198)
                      +.|+++++++|.+.+
T Consensus       142 ~~~v~~l~~~l~~~~  156 (157)
T cd04164         142 GEGLDELKEALLELA  156 (157)
T ss_pred             CCCHHHHHHHHHHhh
Confidence            999999999998865

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>PRK12296 obgE GTPase CgtA; Reviewed

Probab=99.92  E-value=6.6e-24  Score=169.06  Aligned_cols=163  Identities=23%  Similarity=0.243  Sum_probs=112.8

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEE---eCCceEEEeCCCCccccchhHHHHHHHHHHHHH
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY   97 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~   97 (198)
                      ...|+++|.||+|||||+|+|.+.+  ..+.++++||.......   .+..++++||||+.+.....      ..+..++
T Consensus       159 ~adV~LVG~PNAGKSTLln~Ls~ak--pkIadypfTTl~P~lGvv~~~~~~f~laDtPGliegas~g------~gLg~~f  230 (500)
T PRK12296        159 VADVGLVGFPSAGKSSLISALSAAK--PKIADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGASEG------KGLGLDF  230 (500)
T ss_pred             cceEEEEEcCCCCHHHHHHHHhcCC--ccccccCcccccceEEEEEECCeEEEEEECCCCccccchh------hHHHHHH
Confidence            3589999999999999999999874  45788999997754332   35689999999986533211      2233345


Q ss_pred             HhcccccceEEEEEeCCCCC----CcCcHH-HHHHHH--------------hhCCcEEEEEeccCCCCcHHHHHHHHHHH
Q 029158           98 VSTRVSLKRVCLLIDTKWGV----KPRDHE-LISLME--------------RSQTKYQVVLTKTDTVFPIDVARRAMQIE  158 (198)
Q Consensus        98 ~~~~~~~d~vi~v~d~~~~~----~~~~~~-~~~~~~--------------~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~  158 (198)
                      +.....+|++++|+|++...    ...+.+ +...+.              ..++|+|+|+||+|+....+..   +.+.
T Consensus       231 LrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~---e~l~  307 (500)
T PRK12296        231 LRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELA---EFVR  307 (500)
T ss_pred             HHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHHH---HHHH
Confidence            55566699999999997521    111111 122221              2368999999999997654332   2222


Q ss_pred             HHHHhccCCCCCcEEeccCCCCChHHHHHHHHHhhcccc
Q 029158          159 ESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIARFAK  197 (198)
Q Consensus       159 ~~~~~~~~~~~~v~~~Sa~~~~gi~~l~~~i~~~~~~~r  197 (198)
                      +.+..   ...+++++||++++|+++|+++|.+.+...|
T Consensus       308 ~~l~~---~g~~Vf~ISA~tgeGLdEL~~~L~ell~~~r  343 (500)
T PRK12296        308 PELEA---RGWPVFEVSAASREGLRELSFALAELVEEAR  343 (500)
T ss_pred             HHHHH---cCCeEEEEECCCCCCHHHHHHHHHHHHHhhh
Confidence            22222   1478999999999999999999998876543

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.92  E-value=1.9e-23  Score=168.42  Aligned_cols=161  Identities=21%  Similarity=0.250  Sum_probs=115.3

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEE---eCCceEEEeCCCCccccchhHHHHHHHHHHHH
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE   96 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~   96 (198)
                      ..++|+++|.+|+|||||+|+|++. ......+.+++|++.....   .+..+.+|||||+....  ......+..   +
T Consensus        37 ~~~~V~IvG~~nvGKSSL~nrl~~~-~~~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~--~~~~~~~~~---~  110 (472)
T PRK03003         37 PLPVVAVVGRPNVGKSTLVNRILGR-REAVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDA--KGLQASVAE---Q  110 (472)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCc-CcccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcc--hhHHHHHHH---H
Confidence            4589999999999999999999987 4456677888887754333   35679999999975321  111212222   2


Q ss_pred             HHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEecc
Q 029158           97 YVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSS  176 (198)
Q Consensus        97 ~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa  176 (198)
                      .......+|++++|+|++.+....+..+...+...++|+++|+||+|+......      ..+. ... +.. ..+++||
T Consensus       111 ~~~~~~~aD~il~VvD~~~~~s~~~~~i~~~l~~~~~piilV~NK~Dl~~~~~~------~~~~-~~~-g~~-~~~~iSA  181 (472)
T PRK03003        111 AEVAMRTADAVLFVVDATVGATATDEAVARVLRRSGKPVILAANKVDDERGEAD------AAAL-WSL-GLG-EPHPVSA  181 (472)
T ss_pred             HHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECccCCccchh------hHHH-Hhc-CCC-CeEEEEc
Confidence            222333499999999999887777777888888888999999999999653211      1111 111 112 3479999


Q ss_pred             CCCCChHHHHHHHHHhhcc
Q 029158          177 KSGAGIRSLRTVLSKIARF  195 (198)
Q Consensus       177 ~~~~gi~~l~~~i~~~~~~  195 (198)
                      ++|.|+++++++|.+.+..
T Consensus       182 ~~g~gi~eL~~~i~~~l~~  200 (472)
T PRK03003        182 LHGRGVGDLLDAVLAALPE  200 (472)
T ss_pred             CCCCCcHHHHHHHHhhccc
Confidence            9999999999999887643

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.92  E-value=2.5e-23  Score=174.82  Aligned_cols=172  Identities=20%  Similarity=0.198  Sum_probs=123.1

Q ss_pred             CCCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE---EEEeCCceEEEeCCCCccccchhHHHHHHHHHH
Q 029158           18 APDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELV   94 (198)
Q Consensus        18 ~~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~---~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~   94 (198)
                      +...++|+++|.+|+|||||+|+|++. ....+.++++||.+..   +...+.++.+|||||+.......+..+.+..+ 
T Consensus       447 ~~~~~kI~ivG~~nvGKSSLin~l~~~-~~~~v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~~~~~~~e~~~~~-  524 (712)
T PRK09518        447 PSGLRRVALVGRPNVGKSSLLNQLTHE-ERAVVNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQHKLTGAEYYSSL-  524 (712)
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHhCc-cccccCCCCCCCcCcceeEEEECCCEEEEEECCCcccCcccchhHHHHHHH-
Confidence            345689999999999999999999998 4455677888887743   33346789999999975432211111111111 


Q ss_pred             HHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEe
Q 029158           95 KEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMV  174 (198)
Q Consensus        95 ~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  174 (198)
                       ........+|++++|+|++++....+..++..+...++|+++|+||+|+......+.....+...+..  ....+++++
T Consensus       525 -r~~~~i~~advvilViDat~~~s~~~~~i~~~~~~~~~piIiV~NK~DL~~~~~~~~~~~~~~~~l~~--~~~~~ii~i  601 (712)
T PRK09518        525 -RTQAAIERSELALFLFDASQPISEQDLKVMSMAVDAGRALVLVFNKWDLMDEFRRQRLERLWKTEFDR--VTWARRVNL  601 (712)
T ss_pred             -HHHHHhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEEchhcCChhHHHHHHHHHHHhccC--CCCCCEEEE
Confidence             11222345999999999999888888888877777789999999999998754433333333333221  235788999


Q ss_pred             ccCCCCChHHHHHHHHHhhc
Q 029158          175 SSKSGAGIRSLRTVLSKIAR  194 (198)
Q Consensus       175 Sa~~~~gi~~l~~~i~~~~~  194 (198)
                      ||++|.|++++++.+.+.+.
T Consensus       602 SAktg~gv~~L~~~i~~~~~  621 (712)
T PRK09518        602 SAKTGWHTNRLAPAMQEALE  621 (712)
T ss_pred             ECCCCCCHHHHHHHHHHHHH
Confidence            99999999999999988764

>cd01878 HflX HflX subfamily

Probab=99.92  E-value=1.7e-23  Score=151.63  Aligned_cols=158  Identities=18%  Similarity=0.234  Sum_probs=103.0

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEE---eC-CceEEEeCCCCccccchhHHHHHHHHHH
Q 029158           19 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LG-TKLCLVDLPGYGFAYAKEEVKDAWEELV   94 (198)
Q Consensus        19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~---~~-~~~~iiDtpG~~~~~~~~~~~~~~~~~~   94 (198)
                      +..++|+++|++|+|||||++++++..  ....+.+.+|.+.....   .+ ..+.+|||||+.+.... .....+... 
T Consensus        39 ~~~~~I~iiG~~g~GKStLl~~l~~~~--~~~~~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~-~~~~~~~~~-  114 (204)
T cd01878          39 SGIPTVALVGYTNAGKSTLFNALTGAD--VYAEDQLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLPH-QLVEAFRST-  114 (204)
T ss_pred             cCCCeEEEECCCCCCHHHHHHHHhcch--hccCCccceeccceeEEEEecCCceEEEeCCCccccCCCH-HHHHHHHHH-
Confidence            456899999999999999999999973  22333334443322111   12 38999999998543221 111222221 


Q ss_pred             HHHHhcccccceEEEEEeCCCCCCcCcH-HHHHHHH---hhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCC
Q 029158           95 KEYVSTRVSLKRVCLLIDTKWGVKPRDH-ELISLME---RSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQP  170 (198)
Q Consensus        95 ~~~~~~~~~~d~vi~v~d~~~~~~~~~~-~~~~~~~---~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (198)
                         ......+|++++|+|+++....... .+.+.+.   ..+.|+++|+||+|+.......       ..   ......+
T Consensus       115 ---~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~~-------~~---~~~~~~~  181 (204)
T cd01878         115 ---LEEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEELE-------ER---LEAGRPD  181 (204)
T ss_pred             ---HHHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHHHH-------HH---hhcCCCc
Confidence               2223348999999999875443332 2233333   3368999999999997754332       11   1123578


Q ss_pred             cEEeccCCCCChHHHHHHHHHhh
Q 029158          171 VMMVSSKSGAGIRSLRTVLSKIA  193 (198)
Q Consensus       171 v~~~Sa~~~~gi~~l~~~i~~~~  193 (198)
                      ++++||+++.|+++++++|...+
T Consensus       182 ~~~~Sa~~~~gi~~l~~~L~~~~  204 (204)
T cd01878         182 AVFISAKTGEGLDELLEAIEELL  204 (204)
T ss_pred             eEEEEcCCCCCHHHHHHHHHhhC
Confidence            99999999999999999998753

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=99.92  E-value=1.5e-23  Score=162.42  Aligned_cols=156  Identities=21%  Similarity=0.248  Sum_probs=105.5

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEE----eCCceEEEeCCCCccccchhHHHHHHHHHH
Q 029158           19 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK----LGTKLCLVDLPGYGFAYAKEEVKDAWEELV   94 (198)
Q Consensus        19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~----~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~   94 (198)
                      ...++|+++|.+|+|||||+|+|++.+  ....+.+++|.+.....    .+..+.+|||||+.... .+...+.+... 
T Consensus       187 ~~~~~ValvG~~NvGKSSLln~L~~~~--~~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l-~~~lie~f~~t-  262 (351)
T TIGR03156       187 ADVPTVALVGYTNAGKSTLFNALTGAD--VYAADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRDL-PHELVAAFRAT-  262 (351)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCc--eeeccCCccccCCEEEEEEeCCCceEEEEecCcccccC-CHHHHHHHHHH-
Confidence            456899999999999999999999984  45566777776643222    35689999999983321 12222223222 


Q ss_pred             HHHHhcccccceEEEEEeCCCCCCcCcH----HHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCC
Q 029158           95 KEYVSTRVSLKRVCLLIDTKWGVKPRDH----ELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQP  170 (198)
Q Consensus        95 ~~~~~~~~~~d~vi~v~d~~~~~~~~~~----~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (198)
                         +.....+|++++|+|++++......    .+++.+...+.|+++|+||+|+.......    ...   .    ...+
T Consensus       263 ---le~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~~v~----~~~---~----~~~~  328 (351)
T TIGR03156       263 ---LEEVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDEPRIE----RLE---E----GYPE  328 (351)
T ss_pred             ---HHHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCChHhHH----HHH---h----CCCC
Confidence               2233458999999999875433332    22333333368999999999997643221    111   1    1246


Q ss_pred             cEEeccCCCCChHHHHHHHHHh
Q 029158          171 VMMVSSKSGAGIRSLRTVLSKI  192 (198)
Q Consensus       171 v~~~Sa~~~~gi~~l~~~i~~~  192 (198)
                      ++++||++|+|+++++++|.+.
T Consensus       329 ~i~iSAktg~GI~eL~~~I~~~  350 (351)
T TIGR03156       329 AVFVSAKTGEGLDLLLEAIAER  350 (351)
T ss_pred             EEEEEccCCCCHHHHHHHHHhh
Confidence            8999999999999999999765

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>cd01884 EF_Tu EF-Tu subfamily

Probab=99.91  E-value=4.1e-23  Score=147.97  Aligned_cols=159  Identities=18%  Similarity=0.237  Sum_probs=114.6

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCccc--------------eeecCCCCceeEEE---EEEeCCceEEEeCCCCccccch
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQWGV--------------VRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAK   83 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~~~~--------------~~~~~~~~~t~~~~---~~~~~~~~~iiDtpG~~~~~~~   83 (198)
                      ..+|+++|..++|||||+++|++....              .......++|.+..   +...+.++.++||||+      
T Consensus         2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~------   75 (195)
T cd01884           2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGH------   75 (195)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCH------
Confidence            357999999999999999999864100              01111344555443   2223578999999997      


Q ss_pred             hHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCc-EEEEEeccCCCCcHHH-HHHHHHHHHHH
Q 029158           84 EEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKTDTVFPIDV-ARRAMQIEESL  161 (198)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~~~~-~~~~~~~~~~~  161 (198)
                             ..+..+.......+|++++|+|+..+....+.+++..+...++| +|+++||+|+....+. +...+++.+.+
T Consensus        76 -------~~~~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l  148 (195)
T cd01884          76 -------ADYIKNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQVGVPYIVVFLNKADMVDDEELLELVEMEVRELL  148 (195)
T ss_pred             -------HHHHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHH
Confidence                   44566667777789999999999998888888888888888887 7899999999754443 33455666666


Q ss_pred             Hhcc--CCCCCcEEeccCCCCCh----------HHHHHHHHHh
Q 029158          162 KANN--SLVQPVMMVSSKSGAGI----------RSLRTVLSKI  192 (198)
Q Consensus       162 ~~~~--~~~~~v~~~Sa~~~~gi----------~~l~~~i~~~  192 (198)
                      ....  ....+++++||.+|.++          ..|++.|...
T Consensus       149 ~~~g~~~~~v~iipiSa~~g~n~~~~~~w~~~~~~l~~~l~~~  191 (195)
T cd01884         149 SKYGFDGDNTPIVRGSALKALEGDDPNKWVKKILELLDALDSY  191 (195)
T ss_pred             HHhcccccCCeEEEeeCccccCCCCCCcchhcHhHHHHHHHhC
Confidence            5442  23589999999999874          4566666543

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=99.91  E-value=1.8e-23  Score=145.41  Aligned_cols=153  Identities=24%  Similarity=0.309  Sum_probs=106.4

Q ss_pred             EEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE---EEEeCCceEEEeCCCCccccchhHHHHHHHHHHHHHHhccc
Q 029158           26 FAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRV  102 (198)
Q Consensus        26 ~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~---~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (198)
                      ++|.+|+|||||++++++..  .....++++|.+..   +...+.++.+|||||+.+......    ...+...++.. .
T Consensus         1 l~G~~~~GKssl~~~~~~~~--~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~----~~~~~~~~~~~-~   73 (158)
T cd01879           1 LVGNPNVGKTTLFNALTGAR--QKVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSE----DEKVARDFLLG-E   73 (158)
T ss_pred             CCCCCCCCHHHHHHHHhcCc--ccccCCCCcccccceEEEeeCCeEEEEEECCCccccCCCCh----hHHHHHHHhcC-C
Confidence            57999999999999999873  45566677776543   222356799999999754321111    02333445543 5


Q ss_pred             ccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEeccCCCCCh
Q 029158          103 SLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGI  182 (198)
Q Consensus       103 ~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~~~gi  182 (198)
                      .+|++++|+|+.+.  .....+...+...++|+++|+||+|+............+...+      +.+++++||++++|+
T Consensus        74 ~~d~vi~v~d~~~~--~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~------~~~~~~iSa~~~~~~  145 (158)
T cd01879          74 KPDLIVNVVDATNL--ERNLYLTLQLLELGLPVVVALNMIDEAEKRGIKIDLDKLSELL------GVPVVPTSARKGEGI  145 (158)
T ss_pred             CCcEEEEEeeCCcc--hhHHHHHHHHHHcCCCEEEEEehhhhcccccchhhHHHHHHhh------CCCeEEEEccCCCCH
Confidence            69999999999862  3334455566667899999999999976543332222222221      468999999999999


Q ss_pred             HHHHHHHHHhh
Q 029158          183 RSLRTVLSKIA  193 (198)
Q Consensus       183 ~~l~~~i~~~~  193 (198)
                      +++++++...+
T Consensus       146 ~~l~~~l~~~~  156 (158)
T cd01879         146 DELKDAIAELA  156 (158)
T ss_pred             HHHHHHHHHHh
Confidence            99999998764

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.91  E-value=2.8e-23  Score=166.24  Aligned_cols=157  Identities=24%  Similarity=0.320  Sum_probs=118.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEE---EeCCceEEEeCCCCccccchhHHHHHHHHHHHHHHh
Q 029158           23 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF---KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS   99 (198)
Q Consensus        23 ~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~---~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~   99 (198)
                      +|+++|.+|+|||||+|+|++. ..+.+.+.+++|++....   ..+..+.+|||||+...  .....   ..+..+...
T Consensus         1 ~i~ivG~~nvGKStL~n~l~~~-~~~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~--~~~~~---~~~~~~~~~   74 (429)
T TIGR03594         1 VVAIVGRPNVGKSTLFNRLTGK-RDAIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEED--DDGLD---KQIREQAEI   74 (429)
T ss_pred             CEEEECCCCCCHHHHHHHHhCC-CcceecCCCCcccCceEEEEEECCeEEEEEECCCCCCc--chhHH---HHHHHHHHH
Confidence            4899999999999999999998 456778888988775433   24678999999998532  12222   223333344


Q ss_pred             cccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEeccCCC
Q 029158          100 TRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSG  179 (198)
Q Consensus       100 ~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~~  179 (198)
                      ....+|++++|+|+..+....+.++.+.+++.++|+++|+||+|+.......   .   + +...  ...+++++||++|
T Consensus        75 ~~~~ad~vl~vvD~~~~~~~~d~~i~~~l~~~~~piilVvNK~D~~~~~~~~---~---~-~~~l--g~~~~~~vSa~~g  145 (429)
T TIGR03594        75 AIEEADVILFVVDGREGLTPEDEEIAKWLRKSGKPVILVANKIDGKKEDAVA---A---E-FYSL--GFGEPIPISAEHG  145 (429)
T ss_pred             HHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEEEECccCCcccccH---H---H-HHhc--CCCCeEEEeCCcC
Confidence            4455999999999999888888888888988899999999999997643211   1   1 1111  1347899999999


Q ss_pred             CChHHHHHHHHHhhc
Q 029158          180 AGIRSLRTVLSKIAR  194 (198)
Q Consensus       180 ~gi~~l~~~i~~~~~  194 (198)
                      .|++++++++.+.+.
T Consensus       146 ~gv~~ll~~i~~~l~  160 (429)
T TIGR03594       146 RGIGDLLDAILELLP  160 (429)
T ss_pred             CChHHHHHHHHHhcC
Confidence            999999999988764

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>TIGR00475 selB selenocysteine-specific elongation factor SelB

Probab=99.91  E-value=5.2e-23  Score=168.77  Aligned_cols=160  Identities=25%  Similarity=0.353  Sum_probs=121.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCc-cceeecCCCCceeEEEEEE---eCCceEEEeCCCCccccchhHHHHHHHHHHHHHH
Q 029158           23 EIAFAGRSNVGKSSMLNALTRQW-GVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV   98 (198)
Q Consensus        23 ~v~~vG~~~~GKSsli~~l~~~~-~~~~~~~~~~~t~~~~~~~---~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~   98 (198)
                      .|+++|.+++|||||+++|++.. .........++|.+..+..   .+..+.+|||||+             +.+...++
T Consensus         2 ~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGh-------------e~f~~~~~   68 (581)
T TIGR00475         2 IIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGH-------------EKFISNAI   68 (581)
T ss_pred             EEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCH-------------HHHHHHHH
Confidence            68999999999999999999752 0011222355666654333   2467899999996             45566777


Q ss_pred             hcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCc-EEEEEeccCCCCcHHHHHHHHHHHHHHHhccC-CCCCcEEecc
Q 029158           99 STRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKTDTVFPIDVARRAMQIEESLKANNS-LVQPVMMVSS  176 (198)
Q Consensus        99 ~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~Sa  176 (198)
                      .....+|++++|+|+++++.....+.+..+...++| +++|+||+|+.+....+...+.+++.+..... ...+++++||
T Consensus        69 ~g~~~aD~aILVVDa~~G~~~qT~ehl~il~~lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA  148 (581)
T TIGR00475        69 AGGGGIDAALLVVDADEGVMTQTGEHLAVLDLLGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSA  148 (581)
T ss_pred             hhhccCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeC
Confidence            777789999999999998777777777777777888 99999999999876555555566665544322 2589999999


Q ss_pred             CCCCChHHHHHHHHHhhcc
Q 029158          177 KSGAGIRSLRTVLSKIARF  195 (198)
Q Consensus       177 ~~~~gi~~l~~~i~~~~~~  195 (198)
                      ++|+|+++++++|.+.+..
T Consensus       149 ~tG~GI~eL~~~L~~l~~~  167 (581)
T TIGR00475       149 KTGQGIGELKKELKNLLES  167 (581)
T ss_pred             CCCCCchhHHHHHHHHHHh
Confidence            9999999999999876654

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=99.91  E-value=5.4e-24  Score=149.50  Aligned_cols=155  Identities=17%  Similarity=0.160  Sum_probs=96.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCccce---eecCCCCceeEEE---EEEeCCceEEEeCCCCccccchhHHHHHHHHHHHH
Q 029158           23 EIAFAGRSNVGKSSMLNALTRQWGVV---RTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE   96 (198)
Q Consensus        23 ~v~~vG~~~~GKSsli~~l~~~~~~~---~~~~~~~~t~~~~---~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~   96 (198)
                      +|+++|++|+|||||+++|.+.. ..   .......+|....   +...+..+.+|||||...          +..+...
T Consensus         1 ~i~~vG~~~~GKstLi~~l~~~~-~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~----------~~~~~~~   69 (167)
T cd04160           1 SVLILGLDNAGKTTFLEQLKTLF-SKYKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGGQES----------LRSLWDK   69 (167)
T ss_pred             CEEEEecCCCCHHHHHHHHhhhc-ccccCCcccccCCccccceEEEEECCEEEEEEECCCChh----------hHHHHHH
Confidence            48999999999999999998752 11   0011112232222   222367899999999632          1222333


Q ss_pred             HHhcccccceEEEEEeCCCCCCcCc-HHHHHHHH----hhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCc
Q 029158           97 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLME----RSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPV  171 (198)
Q Consensus        97 ~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~----~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v  171 (198)
                      ++   ..+|++++|+|+.+...... ..++..+.    ..+.|+++++||+|+.......+..+.+............++
T Consensus        70 ~~---~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (167)
T cd04160          70 YY---AECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDALSVEEIKEVFQDKAEEIGRRDCLV  146 (167)
T ss_pred             Hh---CCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccCCCHHHHHHHhccccccccCCceEE
Confidence            33   34899999999976321111 12222221    236899999999999765443333333333222222234689


Q ss_pred             EEeccCCCCChHHHHHHHHH
Q 029158          172 MMVSSKSGAGIRSLRTVLSK  191 (198)
Q Consensus       172 ~~~Sa~~~~gi~~l~~~i~~  191 (198)
                      +++||++|+|++++++||.+
T Consensus       147 ~~~Sa~~g~gv~e~~~~l~~  166 (167)
T cd04160         147 LPVSALEGTGVREGIEWLVE  166 (167)
T ss_pred             EEeeCCCCcCHHHHHHHHhc
Confidence            99999999999999999965

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>cd04149 Arf6 Arf6 subfamily

Probab=99.91  E-value=2e-23  Score=146.88  Aligned_cols=153  Identities=17%  Similarity=0.134  Sum_probs=95.8

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCce-eEE-EEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHHH
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT-QTI-NFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY   97 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t-~~~-~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~   97 (198)
                      ...+|+++|.+|+|||||+++|..... .   .+.+|+ .+. .+...+..+.+|||||..          .+..+...+
T Consensus         8 ~~~kv~i~G~~~~GKTsli~~l~~~~~-~---~~~~t~g~~~~~~~~~~~~~~l~Dt~G~~----------~~~~~~~~~   73 (168)
T cd04149           8 KEMRILMLGLDAAGKTTILYKLKLGQS-V---TTIPTVGFNVETVTYKNVKFNVWDVGGQD----------KIRPLWRHY   73 (168)
T ss_pred             CccEEEEECcCCCCHHHHHHHHccCCC-c---cccCCcccceEEEEECCEEEEEEECCCCH----------HHHHHHHHH
Confidence            457999999999999999999987632 1   122221 111 122235779999999962          112333344


Q ss_pred             HhcccccceEEEEEeCCCCCC--cCcHHHHHHHHh---hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcE
Q 029158           98 VSTRVSLKRVCLLIDTKWGVK--PRDHELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVM  172 (198)
Q Consensus        98 ~~~~~~~d~vi~v~d~~~~~~--~~~~~~~~~~~~---~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~  172 (198)
                      +..   +|++++|+|+++...  ....++.+.+..   .+.|+++|+||+|+......++....+.  +........+++
T Consensus        74 ~~~---a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~--~~~~~~~~~~~~  148 (168)
T cd04149          74 YTG---TQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAMKPHEIQEKLG--LTRIRDRNWYVQ  148 (168)
T ss_pred             hcc---CCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCCCHHHHHHHcC--CCccCCCcEEEE
Confidence            444   899999999986321  111222233322   2589999999999975332222222211  001112235689


Q ss_pred             EeccCCCCChHHHHHHHHH
Q 029158          173 MVSSKSGAGIRSLRTVLSK  191 (198)
Q Consensus       173 ~~Sa~~~~gi~~l~~~i~~  191 (198)
                      ++||++|+|++++++||.+
T Consensus       149 ~~SAk~g~gv~~~~~~l~~  167 (168)
T cd04149         149 PSCATSGDGLYEGLTWLSS  167 (168)
T ss_pred             EeeCCCCCChHHHHHHHhc
Confidence            9999999999999999965

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>cd04154 Arl2 Arl2 subfamily

Probab=99.91  E-value=2.3e-23  Score=147.22  Aligned_cols=155  Identities=18%  Similarity=0.186  Sum_probs=97.5

Q ss_pred             CCCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHHH
Q 029158           18 APDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY   97 (198)
Q Consensus        18 ~~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~   97 (198)
                      +...++|+++|++|+|||||++++.+. ......+..+... ..+...+..+.+|||||...          +..+...+
T Consensus        11 ~~~~~kv~ivG~~~~GKTsL~~~l~~~-~~~~~~~t~g~~~-~~~~~~~~~l~l~D~~G~~~----------~~~~~~~~   78 (173)
T cd04154          11 KEREMRILILGLDNAGKTTILKKLLGE-DIDTISPTLGFQI-KTLEYEGYKLNIWDVGGQKT----------LRPYWRNY   78 (173)
T ss_pred             CCCccEEEEECCCCCCHHHHHHHHccC-CCCCcCCccccce-EEEEECCEEEEEEECCCCHH----------HHHHHHHH
Confidence            345678999999999999999999987 3322222211111 11222356789999999521          12233344


Q ss_pred             HhcccccceEEEEEeCCCCCCcCc-HHHHHHH-H---hhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHh--ccCCCCC
Q 029158           98 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLM-E---RSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKA--NNSLVQP  170 (198)
Q Consensus        98 ~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~-~---~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~~  170 (198)
                      +.   .+|++++|+|+.....-.. ..++..+ .   ..+.|+++|+||+|+......++    +++.+..  ......+
T Consensus        79 ~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~----~~~~~~~~~~~~~~~~  151 (173)
T cd04154          79 FE---STDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGALSEEE----IREALELDKISSHHWR  151 (173)
T ss_pred             hC---CCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCCCHHH----HHHHhCccccCCCceE
Confidence            43   4899999999986421111 1222222 2   24689999999999976433222    2222211  1123568


Q ss_pred             cEEeccCCCCChHHHHHHHHH
Q 029158          171 VMMVSSKSGAGIRSLRTVLSK  191 (198)
Q Consensus       171 v~~~Sa~~~~gi~~l~~~i~~  191 (198)
                      ++++||++|.|++++++++..
T Consensus       152 ~~~~Sa~~g~gi~~l~~~l~~  172 (173)
T cd04154         152 IQPCSAVTGEGLLQGIDWLVD  172 (173)
T ss_pred             EEeccCCCCcCHHHHHHHHhc
Confidence            999999999999999999864

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional

Probab=99.91  E-value=1.4e-22  Score=166.84  Aligned_cols=160  Identities=23%  Similarity=0.354  Sum_probs=124.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCc-cceeecCCCCceeEEEEEEe----CCceEEEeCCCCccccchhHHHHHHHHHHHHH
Q 029158           23 EIAFAGRSNVGKSSMLNALTRQW-GVVRTSDKPGLTQTINFFKL----GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY   97 (198)
Q Consensus        23 ~v~~vG~~~~GKSsli~~l~~~~-~~~~~~~~~~~t~~~~~~~~----~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~   97 (198)
                      .|+++|.+++|||||+++|.+.+ .........+.|.+..+...    +..+.+|||||+             +.+...+
T Consensus         2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGh-------------e~fi~~m   68 (614)
T PRK10512          2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGH-------------EKFLSNM   68 (614)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCH-------------HHHHHHH
Confidence            58999999999999999999752 11122333567777654332    456899999997             4556667


Q ss_pred             HhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCc-EEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEecc
Q 029158           98 VSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSS  176 (198)
Q Consensus        98 ~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa  176 (198)
                      ......+|++++|+|+..++...+.+.+..+...++| +++|+||+|+.+....+...+.+++.+........+++++||
T Consensus        69 ~~g~~~~D~~lLVVda~eg~~~qT~ehl~il~~lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA  148 (614)
T PRK10512         69 LAGVGGIDHALLVVACDDGVMAQTREHLAILQLTGNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAA  148 (614)
T ss_pred             HHHhhcCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeC
Confidence            7777779999999999999888888888888877777 579999999987666666667777666544333578999999


Q ss_pred             CCCCChHHHHHHHHHhhcc
Q 029158          177 KSGAGIRSLRTVLSKIARF  195 (198)
Q Consensus       177 ~~~~gi~~l~~~i~~~~~~  195 (198)
                      ++|+|+++|+++|.+....
T Consensus       149 ~tG~gI~~L~~~L~~~~~~  167 (614)
T PRK10512        149 TEGRGIDALREHLLQLPER  167 (614)
T ss_pred             CCCCCCHHHHHHHHHhhcc
Confidence            9999999999999876544

>cd01890 LepA LepA subfamily

Probab=99.91  E-value=4.6e-23  Score=146.38  Aligned_cols=156  Identities=22%  Similarity=0.249  Sum_probs=100.9

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCccc-------eeecC------CCCceeEE-----EEE---EeCCceEEEeCCCCccc
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQWGV-------VRTSD------KPGLTQTI-----NFF---KLGTKLCLVDLPGYGFA   80 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~~~~-------~~~~~------~~~~t~~~-----~~~---~~~~~~~iiDtpG~~~~   80 (198)
                      ++|+++|.+++|||||+++|++....       ....+      ..+++...     .+.   ..+..+.+|||||+.+ 
T Consensus         1 rni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-   79 (179)
T cd01890           1 RNFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVD-   79 (179)
T ss_pred             CcEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChh-
Confidence            36899999999999999999874200       00111      11223221     111   1245688999999732 


Q ss_pred             cchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHH
Q 029158           81 YAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEES  160 (198)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~  160 (198)
                               +......++.   .+|++++|+|++.+....+...+..+...++|+++|+||+|+..... .+..+.+.+.
T Consensus        80 ---------~~~~~~~~~~---~ad~~i~v~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~~~-~~~~~~~~~~  146 (179)
T cd01890          80 ---------FSYEVSRSLA---ACEGALLLVDATQGVEAQTLANFYLALENNLEIIPVINKIDLPSADP-ERVKQQIEDV  146 (179)
T ss_pred             ---------hHHHHHHHHH---hcCeEEEEEECCCCccHhhHHHHHHHHHcCCCEEEEEECCCCCcCCH-HHHHHHHHHH
Confidence                     1223333443   38999999999886655555555555556899999999999965321 2222333333


Q ss_pred             HHhccCCCCCcEEeccCCCCChHHHHHHHHHhhc
Q 029158          161 LKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR  194 (198)
Q Consensus       161 ~~~~~~~~~~v~~~Sa~~~~gi~~l~~~i~~~~~  194 (198)
                      +.   ....+++++||++|+|+++++++|.+.++
T Consensus       147 ~~---~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~  177 (179)
T cd01890         147 LG---LDPSEAILVSAKTGLGVEDLLEAIVERIP  177 (179)
T ss_pred             hC---CCcccEEEeeccCCCCHHHHHHHHHhhCC
Confidence            21   11235899999999999999999988764

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=99.91  E-value=1.9e-23  Score=145.76  Aligned_cols=154  Identities=16%  Similarity=0.177  Sum_probs=92.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHHHHhccc
Q 029158           23 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRV  102 (198)
Q Consensus        23 ~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (198)
                      +|+++|++|+|||||++++.+.. .....+..+.+...........+.+|||||...          +......++.   
T Consensus         1 ~i~i~G~~~~GKTsl~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~l~i~D~~G~~~----------~~~~~~~~~~---   66 (160)
T cd04156           1 QVLLLGLDSAGKSTLLYKLKHAE-LVTTIPTVGFNVEMLQLEKHLSLTVWDVGGQEK----------MRTVWKCYLE---   66 (160)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCC-cccccCccCcceEEEEeCCceEEEEEECCCCHh----------HHHHHHHHhc---
Confidence            58999999999999999999874 222111111111111112246799999999621          1222233333   


Q ss_pred             ccceEEEEEeCCCCCC--cCcHHHHHHHHh---hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEeccC
Q 029158          103 SLKRVCLLIDTKWGVK--PRDHELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSK  177 (198)
Q Consensus       103 ~~d~vi~v~d~~~~~~--~~~~~~~~~~~~---~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~  177 (198)
                      .+|++++|+|+++...  .....+...+..   .+.|+++|+||+|+......++....+... ........+++++||+
T Consensus        67 ~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~Sa~  145 (160)
T cd04156          67 NTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALTAEEITRRFKLK-KYCSDRDWYVQPCSAV  145 (160)
T ss_pred             cCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCcCHHHHHHHcCCc-ccCCCCcEEEEecccc
Confidence            3899999999986421  111122222221   368999999999997543222222221100 0011123579999999


Q ss_pred             CCCChHHHHHHHHH
Q 029158          178 SGAGIRSLRTVLSK  191 (198)
Q Consensus       178 ~~~gi~~l~~~i~~  191 (198)
                      +|+|+++++++|.+
T Consensus       146 ~~~gv~~~~~~i~~  159 (160)
T cd04156         146 TGEGLAEAFRKLAS  159 (160)
T ss_pred             cCCChHHHHHHHhc
Confidence            99999999999864

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.91  E-value=1.2e-22  Score=162.76  Aligned_cols=156  Identities=23%  Similarity=0.327  Sum_probs=114.2

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEE---eCCceEEEeCCCCccccchhHHHHHHHHHHHHHH
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV   98 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~   98 (198)
                      ++|+++|.+|+|||||+|+|++. ..+.+.+.+++|++.....   .+..+.+|||||+....  ....   ..+..+..
T Consensus         2 ~~I~ivG~~~vGKStL~n~l~~~-~~~~v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~--~~~~---~~~~~~~~   75 (435)
T PRK00093          2 PVVAIVGRPNVGKSTLFNRLTGK-RDAIVADTPGVTRDRIYGEAEWLGREFILIDTGGIEPDD--DGFE---KQIREQAE   75 (435)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC-CceeeCCCCCCcccceEEEEEECCcEEEEEECCCCCCcc--hhHH---HHHHHHHH
Confidence            68999999999999999999988 4556777888887654322   36789999999986521  1111   22223333


Q ss_pred             hcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEeccCC
Q 029158           99 STRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKS  178 (198)
Q Consensus        99 ~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~  178 (198)
                      .....+|++++|+|++++....+.++.+++...+.|+++|+||+|+....      ....+. ...  ....++++||++
T Consensus        76 ~~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~D~~~~~------~~~~~~-~~l--g~~~~~~iSa~~  146 (435)
T PRK00093         76 LAIEEADVILFVVDGRAGLTPADEEIAKILRKSNKPVILVVNKVDGPDEE------ADAYEF-YSL--GLGEPYPISAEH  146 (435)
T ss_pred             HHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCcEEEEEECccCccch------hhHHHH-Hhc--CCCCCEEEEeeC
Confidence            34445999999999998877777888888888899999999999976422      111111 111  123489999999


Q ss_pred             CCChHHHHHHHHHh
Q 029158          179 GAGIRSLRTVLSKI  192 (198)
Q Consensus       179 ~~gi~~l~~~i~~~  192 (198)
                      |.|+++++++|...
T Consensus       147 g~gv~~l~~~I~~~  160 (435)
T PRK00093        147 GRGIGDLLDAILEE  160 (435)
T ss_pred             CCCHHHHHHHHHhh
Confidence            99999999999873

>cd04165 GTPBP1_like GTPBP1-like

Probab=99.90  E-value=2.8e-22  Score=146.59  Aligned_cols=156  Identities=22%  Similarity=0.273  Sum_probs=112.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCccc-----eee-------cCCCCceeE-----E---------------------E-EE
Q 029158           23 EIAFAGRSNVGKSSMLNALTRQWGV-----VRT-------SDKPGLTQT-----I---------------------N-FF   63 (198)
Q Consensus        23 ~v~~vG~~~~GKSsli~~l~~~~~~-----~~~-------~~~~~~t~~-----~---------------------~-~~   63 (198)
                      +|+++|..++|||||++++......     ...       +...+.|..     .                     . +.
T Consensus         1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~   80 (224)
T cd04165           1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE   80 (224)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence            5899999999999999999854210     000       000111110     0                     1 11


Q ss_pred             EeCCceEEEeCCCCccccchhHHHHHHHHHHHHHHhccc--ccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEec
Q 029158           64 KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRV--SLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTK  141 (198)
Q Consensus        64 ~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~--~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK  141 (198)
                      ..+..+.++||||+             ..+.+.......  .+|++++|+|+..++...+.+++..+...++|+++|+||
T Consensus        81 ~~~~~i~liDtpG~-------------~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d~~~l~~l~~~~ip~ivvvNK  147 (224)
T cd04165          81 KSSKLVTFIDLAGH-------------ERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALALNIPVFVVVTK  147 (224)
T ss_pred             eCCcEEEEEECCCc-------------HHHHHHHHHhhcccCCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEC
Confidence            22567999999997             333444444443  589999999999998888899999999889999999999


Q ss_pred             cCCCCcHHHHHHHHHHHHHHHh-----------------------ccCCCCCcEEeccCCCCChHHHHHHHHH
Q 029158          142 TDTVFPIDVARRAMQIEESLKA-----------------------NNSLVQPVMMVSSKSGAGIRSLRTVLSK  191 (198)
Q Consensus       142 ~Dl~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~v~~~Sa~~~~gi~~l~~~i~~  191 (198)
                      +|+.......+....+++.+..                       ......|+|.+||.+|+|+++|.+.|..
T Consensus       148 ~D~~~~~~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~  220 (224)
T cd04165         148 IDLAPANILQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL  220 (224)
T ss_pred             ccccCHHHHHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence            9998776677777777766542                       1233469999999999999999998865

Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=99.90  E-value=5.5e-23  Score=164.31  Aligned_cols=153  Identities=29%  Similarity=0.350  Sum_probs=109.3

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE---EEEeCCceEEEeCCCCccccchhHHHHHHHHHHHHH
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY   97 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~---~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~   97 (198)
                      .++|+++|.+|+|||||+|+|++. ....+.+.+++|.+..   +...+.++.+|||||+.+..  +....   ......
T Consensus       215 ~~kV~ivG~~nvGKSSLln~L~~~-~~a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~--~~ie~---~gi~~~  288 (449)
T PRK05291        215 GLKVVIAGRPNVGKSSLLNALLGE-ERAIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETD--DEVEK---IGIERS  288 (449)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC-CCcccCCCCCcccccEEEEEEECCeEEEEEeCCCCCCCc--cHHHH---HHHHHH
Confidence            478999999999999999999997 4456778888887754   22246789999999985421  11110   001112


Q ss_pred             HhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEeccC
Q 029158           98 VSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSK  177 (198)
Q Consensus        98 ~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~  177 (198)
                      +.....+|++++|+|++++....+...+..  ..+.|+++|+||+|+.......             .....+++++||+
T Consensus       289 ~~~~~~aD~il~VvD~s~~~s~~~~~~l~~--~~~~piiiV~NK~DL~~~~~~~-------------~~~~~~~i~iSAk  353 (449)
T PRK05291        289 REAIEEADLVLLVLDASEPLTEEDDEILEE--LKDKPVIVVLNKADLTGEIDLE-------------EENGKPVIRISAK  353 (449)
T ss_pred             HHHHHhCCEEEEEecCCCCCChhHHHHHHh--cCCCCcEEEEEhhhccccchhh-------------hccCCceEEEEee
Confidence            223344999999999987655444444443  3478999999999997643221             1224689999999


Q ss_pred             CCCChHHHHHHHHHhhc
Q 029158          178 SGAGIRSLRTVLSKIAR  194 (198)
Q Consensus       178 ~~~gi~~l~~~i~~~~~  194 (198)
                      +|+|+++++++|.+.+.
T Consensus       354 tg~GI~~L~~~L~~~l~  370 (449)
T PRK05291        354 TGEGIDELREAIKELAF  370 (449)
T ss_pred             CCCCHHHHHHHHHHHHh
Confidence            99999999999988764

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.90  E-value=1.8e-22  Score=169.63  Aligned_cols=163  Identities=20%  Similarity=0.273  Sum_probs=119.7

Q ss_pred             CCCCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEE---eCCceEEEeCCCCccccchhHHHHHHHHH
Q 029158           17 PAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEEL   93 (198)
Q Consensus        17 ~~~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~iiDtpG~~~~~~~~~~~~~~~~~   93 (198)
                      .+...++|+++|.+|+|||||+|+|++. ....+.+.+++|++.....   .+..+.+|||||+....  ....   ..+
T Consensus       271 ~~~~~~~V~IvG~~nvGKSSL~n~l~~~-~~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~--~~~~---~~~  344 (712)
T PRK09518        271 GPKAVGVVAIVGRPNVGKSTLVNRILGR-REAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADV--EGID---SAI  344 (712)
T ss_pred             ccccCcEEEEECCCCCCHHHHHHHHhCC-CceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCC--ccHH---HHH
Confidence            3455689999999999999999999987 4567788899988765433   25689999999975321  1112   222


Q ss_pred             HHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEE
Q 029158           94 VKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMM  173 (198)
Q Consensus        94 ~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  173 (198)
                      ..+.......+|++++|+|+..++...+.++.+.++..+.|+++|+||+|+......      ..+. ... + ....++
T Consensus       345 ~~~~~~~~~~aD~iL~VvDa~~~~~~~d~~i~~~Lr~~~~pvIlV~NK~D~~~~~~~------~~~~-~~l-g-~~~~~~  415 (712)
T PRK09518        345 ASQAQIAVSLADAVVFVVDGQVGLTSTDERIVRMLRRAGKPVVLAVNKIDDQASEYD------AAEF-WKL-G-LGEPYP  415 (712)
T ss_pred             HHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECcccccchhh------HHHH-HHc-C-CCCeEE
Confidence            333333344599999999999888888888888888889999999999998653211      1111 111 1 124679


Q ss_pred             eccCCCCChHHHHHHHHHhhc
Q 029158          174 VSSKSGAGIRSLRTVLSKIAR  194 (198)
Q Consensus       174 ~Sa~~~~gi~~l~~~i~~~~~  194 (198)
                      +||++|.|+++++++|.+.+.
T Consensus       416 iSA~~g~GI~eLl~~i~~~l~  436 (712)
T PRK09518        416 ISAMHGRGVGDLLDEALDSLK  436 (712)
T ss_pred             EECCCCCCchHHHHHHHHhcc
Confidence            999999999999999988764

>cd04150 Arf1_5_like Arf1-Arf5-like subfamily

Probab=99.90  E-value=7.3e-23  Score=142.77  Aligned_cols=150  Identities=16%  Similarity=0.143  Sum_probs=93.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCccceeecCCCCce-eEEE-EEEeCCceEEEeCCCCccccchhHHHHHHHHHHHHHHhc
Q 029158           23 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT-QTIN-FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVST  100 (198)
Q Consensus        23 ~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t-~~~~-~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~  100 (198)
                      +|+++|.+|+|||||++++..... .   .+.+|+ .... +......+.+|||||...          +..+...+++.
T Consensus         2 kv~~~G~~~~GKTsli~~l~~~~~-~---~~~pt~g~~~~~~~~~~~~~~l~D~~G~~~----------~~~~~~~~~~~   67 (159)
T cd04150           2 RILMVGLDAAGKTTILYKLKLGEI-V---TTIPTIGFNVETVEYKNISFTVWDVGGQDK----------IRPLWRHYFQN   67 (159)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCC-c---ccCCCCCcceEEEEECCEEEEEEECCCCHh----------HHHHHHHHhcC
Confidence            799999999999999999976532 1   122221 1111 222357799999999621          23333444444


Q ss_pred             ccccceEEEEEeCCCCC--CcCcHHHHHHHHh---hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEec
Q 029158          101 RVSLKRVCLLIDTKWGV--KPRDHELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVS  175 (198)
Q Consensus       101 ~~~~d~vi~v~d~~~~~--~~~~~~~~~~~~~---~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~S  175 (198)
                         +|++++|+|+++..  .....++...+..   ...|+++++||+|+......++....+.  ..........++++|
T Consensus        68 ---ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~--~~~~~~~~~~~~~~S  142 (159)
T cd04150          68 ---TQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMSAAEVTDKLG--LHSLRNRNWYIQATC  142 (159)
T ss_pred             ---CCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCCCHHHHHHHhC--ccccCCCCEEEEEee
Confidence               89999999997621  1111222222222   2589999999999975422222222221  011112234678999


Q ss_pred             cCCCCChHHHHHHHHH
Q 029158          176 SKSGAGIRSLRTVLSK  191 (198)
Q Consensus       176 a~~~~gi~~l~~~i~~  191 (198)
                      |++|.|++++++||.+
T Consensus       143 ak~g~gv~~~~~~l~~  158 (159)
T cd04150         143 ATSGDGLYEGLDWLSN  158 (159)
T ss_pred             CCCCCCHHHHHHHHhc
Confidence            9999999999999864

This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents

>cd04157 Arl6 Arl6 subfamily

Probab=99.90  E-value=5.5e-23  Score=143.58  Aligned_cols=153  Identities=15%  Similarity=0.207  Sum_probs=94.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCcc-ceeecCCCCceeEEEEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHHHHhcc
Q 029158           23 EIAFAGRSNVGKSSMLNALTRQWG-VVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTR  101 (198)
Q Consensus        23 ~v~~vG~~~~GKSsli~~l~~~~~-~~~~~~~~~~t~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~  101 (198)
                      +|+++|.+|+|||||+++|.+... .....+..+.+.. .+...+..+.+|||||...          +..+...++.  
T Consensus         1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~-~~~~~~~~~~l~Dt~G~~~----------~~~~~~~~~~--   67 (162)
T cd04157           1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVE-SFEKGNLSFTAFDMSGQGK----------YRGLWEHYYK--   67 (162)
T ss_pred             CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceE-EEEECCEEEEEEECCCCHh----------hHHHHHHHHc--
Confidence            489999999999999999998631 1222222222211 1223456789999999621          1233334443  


Q ss_pred             cccceEEEEEeCCCCCCcCc-HHHHHHH-H-----hhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEe
Q 029158          102 VSLKRVCLLIDTKWGVKPRD-HELISLM-E-----RSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMV  174 (198)
Q Consensus       102 ~~~d~vi~v~d~~~~~~~~~-~~~~~~~-~-----~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  174 (198)
                       .+|++++|+|+++...... ..++..+ .     ..++|+++|+||+|+.......+....+.-  ........+++++
T Consensus        68 -~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~--~~~~~~~~~~~~~  144 (162)
T cd04157          68 -NIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALTAVKITQLLGL--ENIKDKPWHIFAS  144 (162)
T ss_pred             -cCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCCHHHHHHHhCC--ccccCceEEEEEe
Confidence             4899999999986432111 1223222 1     236899999999999764322222111110  0111123468999


Q ss_pred             ccCCCCChHHHHHHHHH
Q 029158          175 SSKSGAGIRSLRTVLSK  191 (198)
Q Consensus       175 Sa~~~~gi~~l~~~i~~  191 (198)
                      ||++|+|+++++++|.+
T Consensus       145 Sa~~g~gv~~~~~~l~~  161 (162)
T cd04157         145 NALTGEGLDEGVQWLQA  161 (162)
T ss_pred             eCCCCCchHHHHHHHhc
Confidence            99999999999999865

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=99.90  E-value=1e-22  Score=142.00  Aligned_cols=150  Identities=17%  Similarity=0.133  Sum_probs=95.4

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEE-----EEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHH
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI-----NFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE   96 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~-----~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~   96 (198)
                      .+|+++|.+|+|||||++++++...   ...+.+++.+.     .+......+.+|||||...          +..+...
T Consensus         2 ~ki~iiG~~~vGKTsl~~~~~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~----------~~~l~~~   68 (162)
T cd04138           2 YKLVVVGAGGVGKSALTIQLIQNHF---VDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEE----------YSAMRDQ   68 (162)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCC---cCCcCCcchheEEEEEEECCEEEEEEEEECCCCcc----------hHHHHHH
Confidence            5799999999999999999998732   22333333221     1111124578899999522          2344445


Q ss_pred             HHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHh----hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCc
Q 029158           97 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPV  171 (198)
Q Consensus        97 ~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~----~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v  171 (198)
                      ++..   +|++++|+|..+...... ..++..+..    .+.|+++|+||+|+........   ...+....   ...++
T Consensus        69 ~~~~---~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~---~~~~~~~~---~~~~~  139 (162)
T cd04138          69 YMRT---GEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAARTVSSR---QGQDLAKS---YGIPY  139 (162)
T ss_pred             HHhc---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccceecHH---HHHHHHHH---hCCeE
Confidence            5544   889999999875221111 123333332    3689999999999975321111   11111111   14689


Q ss_pred             EEeccCCCCChHHHHHHHHHhh
Q 029158          172 MMVSSKSGAGIRSLRTVLSKIA  193 (198)
Q Consensus       172 ~~~Sa~~~~gi~~l~~~i~~~~  193 (198)
                      +++||++|.|++++++++.+.+
T Consensus       140 ~~~Sa~~~~gi~~l~~~l~~~~  161 (162)
T cd04138         140 IETSAKTRQGVEEAFYTLVREI  161 (162)
T ss_pred             EEecCCCCCCHHHHHHHHHHHh
Confidence            9999999999999999998754

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=99.90  E-value=1e-22  Score=147.94  Aligned_cols=150  Identities=17%  Similarity=0.171  Sum_probs=100.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCcccee-----------------------------ecCCCCceeEEE---EEEeCCceE
Q 029158           23 EIAFAGRSNVGKSSMLNALTRQWGVVR-----------------------------TSDKPGLTQTIN---FFKLGTKLC   70 (198)
Q Consensus        23 ~v~~vG~~~~GKSsli~~l~~~~~~~~-----------------------------~~~~~~~t~~~~---~~~~~~~~~   70 (198)
                      +|+++|.+|+|||||+++|+.......                             .....++|.+..   +...+.++.
T Consensus         1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~   80 (208)
T cd04166           1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI   80 (208)
T ss_pred             CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence            589999999999999999986421110                             011144555543   223467899


Q ss_pred             EEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCC-cEEEEEeccCCCCcH-
Q 029158           71 LVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQT-KYQVVLTKTDTVFPI-  148 (198)
Q Consensus        71 iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~-p~iiv~nK~Dl~~~~-  148 (198)
                      ++||||+             ..+..........+|++++|+|++.+....+......+...+. ++|+|+||+|+.... 
T Consensus        81 liDTpG~-------------~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~~~~  147 (208)
T cd04166          81 IADTPGH-------------EQYTRNMVTGASTADLAILLVDARKGVLEQTRRHSYILSLLGIRHVVVAVNKMDLVDYSE  147 (208)
T ss_pred             EEECCcH-------------HHHHHHHHHhhhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCCcEEEEEEchhcccCCH
Confidence            9999996             2222334444556999999999998776666665666665564 478899999997532 


Q ss_pred             -HHHHHHHHHHHHHHhccCCCCCcEEeccCCCCChHHH
Q 029158          149 -DVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSL  185 (198)
Q Consensus       149 -~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~~~gi~~l  185 (198)
                       ........+++.+........+++++||++|.|+++.
T Consensus       148 ~~~~~i~~~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~  185 (208)
T cd04166         148 EVFEEIVADYLAFAAKLGIEDITFIPISALDGDNVVSR  185 (208)
T ss_pred             HHHHHHHHHHHHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence             2233445555544444333467999999999998753

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=99.90  E-value=3.5e-23  Score=146.42  Aligned_cols=154  Identities=21%  Similarity=0.239  Sum_probs=100.9

Q ss_pred             EEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE---EEEe-CCceEEEeCCCCccccchhHHHHHHHHHHHHHHhcc
Q 029158           26 FAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKL-GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTR  101 (198)
Q Consensus        26 ~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~---~~~~-~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~  101 (198)
                      ++|++|+|||||+++|.+.. . ...+++++|....   .... +.++.+|||||+.+.....      +.+..+++...
T Consensus         1 iiG~~~~GKStll~~l~~~~-~-~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~------~~~~~~~~~~~   72 (176)
T cd01881           1 LVGLPNVGKSTLLNALTNAK-P-KVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEG------RGLGNQFLAHI   72 (176)
T ss_pred             CCCCCCCcHHHHHHHHhcCC-c-cccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhcC------CCccHHHHHHH
Confidence            58999999999999999984 2 4566667775543   2223 6789999999974421111      11222333444


Q ss_pred             cccceEEEEEeCCCCC------CcCc-HHHHHHHH----------hhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhc
Q 029158          102 VSLKRVCLLIDTKWGV------KPRD-HELISLME----------RSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKAN  164 (198)
Q Consensus       102 ~~~d~vi~v~d~~~~~------~~~~-~~~~~~~~----------~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~  164 (198)
                      ..+|++++|+|+....      ...+ ..+...+.          ..+.|+++|+||+|+..........  ... .  .
T Consensus        73 ~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~--~~~-~--~  147 (176)
T cd01881          73 RRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEEL--VRE-L--A  147 (176)
T ss_pred             hccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHH--HHH-H--h
Confidence            4589999999998642      1111 11222222          1368999999999998765443322  111 1  1


Q ss_pred             cCCCCCcEEeccCCCCChHHHHHHHHHh
Q 029158          165 NSLVQPVMMVSSKSGAGIRSLRTVLSKI  192 (198)
Q Consensus       165 ~~~~~~v~~~Sa~~~~gi~~l~~~i~~~  192 (198)
                      .....+++++||+++.|++++++++...
T Consensus       148 ~~~~~~~~~~Sa~~~~gl~~l~~~l~~~  175 (176)
T cd01881         148 LEEGAEVVPISAKTEEGLDELIRAIYEL  175 (176)
T ss_pred             cCCCCCEEEEehhhhcCHHHHHHHHHhh
Confidence            2235789999999999999999998764

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>cd04124 RabL2 RabL2 subfamily

Probab=99.90  E-value=2.8e-22  Score=140.12  Aligned_cols=152  Identities=17%  Similarity=0.145  Sum_probs=96.8

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEE---EEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHHHH
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---NFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV   98 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~---~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~   98 (198)
                      .+|+++|.+|+|||||++++++........+..+.+...   .+......+.+|||||..          .+..+...++
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~----------~~~~~~~~~~   70 (161)
T cd04124           1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQE----------RFQTMHASYY   70 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCch----------hhhhhhHHHh
Confidence            479999999999999999999873211111111111111   111123568899999952          2334444444


Q ss_pred             hcccccceEEEEEeCCCCCCcCc-HHHHHHHHhh--CCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEec
Q 029158           99 STRVSLKRVCLLIDTKWGVKPRD-HELISLMERS--QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVS  175 (198)
Q Consensus        99 ~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~~--~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~S  175 (198)
                      ..   +|++++|+|+++.....+ ..++..+...  +.|+++|+||+|+..... .+    ..+...   ....+++++|
T Consensus        71 ~~---~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p~ivv~nK~Dl~~~~~-~~----~~~~~~---~~~~~~~~~S  139 (161)
T cd04124          71 HK---AHACILVFDVTRKITYKNLSKWYEELREYRPEIPCIVVANKIDLDPSVT-QK----KFNFAE---KHNLPLYYVS  139 (161)
T ss_pred             CC---CCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEECccCchhHH-HH----HHHHHH---HcCCeEEEEe
Confidence            44   899999999986433222 3455555543  689999999999853211 11    111111   1147899999


Q ss_pred             cCCCCChHHHHHHHHHhhc
Q 029158          176 SKSGAGIRSLRTVLSKIAR  194 (198)
Q Consensus       176 a~~~~gi~~l~~~i~~~~~  194 (198)
                      |++|.|++++++.+.+.+.
T Consensus       140 a~~~~gv~~l~~~l~~~~~  158 (161)
T cd04124         140 AADGTNVVKLFQDAIKLAV  158 (161)
T ss_pred             CCCCCCHHHHHHHHHHHHH
Confidence            9999999999999987653

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=99.90  E-value=1.2e-22  Score=143.70  Aligned_cols=155  Identities=15%  Similarity=0.141  Sum_probs=95.8

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHHHHh
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS   99 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~   99 (198)
                      ...+|+++|++|+|||||+++++.... ....+..+.+. ..+...+..+.+|||||...          +......++.
T Consensus        14 ~~~kv~~~G~~~~GKTsl~~~l~~~~~-~~~~~t~~~~~-~~~~~~~~~~~l~D~~G~~~----------~~~~~~~~~~   81 (174)
T cd04153          14 KEYKVIIVGLDNAGKTTILYQFLLGEV-VHTSPTIGSNV-EEIVYKNIRFLMWDIGGQES----------LRSSWNTYYT   81 (174)
T ss_pred             CccEEEEECCCCCCHHHHHHHHccCCC-CCcCCccccce-EEEEECCeEEEEEECCCCHH----------HHHHHHHHhh
Confidence            357899999999999999999987732 21222111111 12222367899999999521          1222233333


Q ss_pred             cccccceEEEEEeCCCCCCcC--cHHHHHHHHh---hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEe
Q 029158          100 TRVSLKRVCLLIDTKWGVKPR--DHELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMV  174 (198)
Q Consensus       100 ~~~~~d~vi~v~d~~~~~~~~--~~~~~~~~~~---~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  174 (198)
                         .+|++++|+|+++.....  ..++...+..   .+.|+++++||+|+....+.++..+.+...  .......+++++
T Consensus        82 ---~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~~~~~i~~~l~~~--~~~~~~~~~~~~  156 (174)
T cd04153          82 ---NTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAMTPAEISESLGLT--SIRDHTWHIQGC  156 (174)
T ss_pred             ---cCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCCCHHHHHHHhCcc--cccCCceEEEec
Confidence               489999999998632111  1122233322   258999999999997533222222222100  011124579999


Q ss_pred             ccCCCCChHHHHHHHHH
Q 029158          175 SSKSGAGIRSLRTVLSK  191 (198)
Q Consensus       175 Sa~~~~gi~~l~~~i~~  191 (198)
                      ||++|+|+++++++|.+
T Consensus       157 SA~~g~gi~e~~~~l~~  173 (174)
T cd04153         157 CALTGEGLPEGLDWIAS  173 (174)
T ss_pred             ccCCCCCHHHHHHHHhc
Confidence            99999999999999864

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor

Probab=99.90  E-value=1.6e-22  Score=143.24  Aligned_cols=156  Identities=15%  Similarity=0.114  Sum_probs=97.6

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCce-eEEE-EEEeCCceEEEeCCCCccccchhHHHHHHHHHHHHH
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT-QTIN-FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY   97 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t-~~~~-~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~   97 (198)
                      ...+|+++|.+|+|||||++++..... .   .+.+|+ .+.. .......+.+|||||...          +..+...|
T Consensus        12 ~~~ki~l~G~~~~GKTsL~~~~~~~~~-~---~~~~t~~~~~~~~~~~~~~l~l~D~~G~~~----------~~~~~~~~   77 (175)
T smart00177       12 KEMRILMVGLDAAGKTTILYKLKLGES-V---TTIPTIGFNVETVTYKNISFTVWDVGGQDK----------IRPLWRHY   77 (175)
T ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCC-C---CcCCccccceEEEEECCEEEEEEECCCChh----------hHHHHHHH
Confidence            357899999999999999999976532 1   222222 1111 222356789999999522          13334444


Q ss_pred             HhcccccceEEEEEeCCCCCCc-CcHHHHHHH-Hh---hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcE
Q 029158           98 VSTRVSLKRVCLLIDTKWGVKP-RDHELISLM-ER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVM  172 (198)
Q Consensus        98 ~~~~~~~d~vi~v~d~~~~~~~-~~~~~~~~~-~~---~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~  172 (198)
                      +..   +|++++|+|+++..+- ...+++..+ ..   .+.|+++|+||+|+......++....+..  .........++
T Consensus        78 ~~~---ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~--~~~~~~~~~~~  152 (175)
T smart00177       78 YTN---TQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAMKAAEITEKLGL--HSIRDRNWYIQ  152 (175)
T ss_pred             hCC---CCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCCCHHHHHHHhCc--cccCCCcEEEE
Confidence            444   8999999999863211 112233332 22   25899999999999754332222222211  11112234577


Q ss_pred             EeccCCCCChHHHHHHHHHhhc
Q 029158          173 MVSSKSGAGIRSLRTVLSKIAR  194 (198)
Q Consensus       173 ~~Sa~~~~gi~~l~~~i~~~~~  194 (198)
                      ++||++|+|++++++||.+.+.
T Consensus       153 ~~Sa~~g~gv~e~~~~l~~~~~  174 (175)
T smart00177      153 PTCATSGDGLYEGLTWLSNNLK  174 (175)
T ss_pred             EeeCCCCCCHHHHHHHHHHHhc
Confidence            8999999999999999988753

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=99.90  E-value=1.2e-22  Score=144.90  Aligned_cols=159  Identities=18%  Similarity=0.184  Sum_probs=98.7

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHHHH
Q 029158           19 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV   98 (198)
Q Consensus        19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~   98 (198)
                      ....+|+++|.+|+|||||++++.+.. .....+....+. ..+...+..+.++||||...          .......++
T Consensus        15 ~~~~~i~ivG~~~~GKTsli~~l~~~~-~~~~~~t~~~~~-~~~~~~~~~~~~~D~~G~~~----------~~~~~~~~~   82 (184)
T smart00178       15 NKHAKILFLGLDNAGKTTLLHMLKNDR-LAQHQPTQHPTS-EELAIGNIKFTTFDLGGHQQ----------ARRLWKDYF   82 (184)
T ss_pred             cccCEEEEECCCCCCHHHHHHHHhcCC-CcccCCccccce-EEEEECCEEEEEEECCCCHH----------HHHHHHHHh
Confidence            456899999999999999999999873 222222211111 11222356789999999621          122333444


Q ss_pred             hcccccceEEEEEeCCCCCC--cCcHHHHHHHH---hhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHh-----ccCCC
Q 029158           99 STRVSLKRVCLLIDTKWGVK--PRDHELISLME---RSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKA-----NNSLV  168 (198)
Q Consensus        99 ~~~~~~d~vi~v~d~~~~~~--~~~~~~~~~~~---~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~-----~~~~~  168 (198)
                      .   .+|++++|+|+++...  .....+.+.+.   ..+.|+++|+||+|+......++..+.+.-....     .....
T Consensus        83 ~---~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~l~l~~~~~~~~~~~~~~  159 (184)
T smart00178       83 P---EVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAASEDELRYALGLTNTTGSKGKVGVRP  159 (184)
T ss_pred             C---CCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCCCHHHHHHHcCCCcccccccccCCce
Confidence            4   4899999999976311  11112222222   1368999999999997543333333332200000     01124


Q ss_pred             CCcEEeccCCCCChHHHHHHHHHh
Q 029158          169 QPVMMVSSKSGAGIRSLRTVLSKI  192 (198)
Q Consensus       169 ~~v~~~Sa~~~~gi~~l~~~i~~~  192 (198)
                      ..++++||++++|++++++||.+.
T Consensus       160 ~~i~~~Sa~~~~g~~~~~~wl~~~  183 (184)
T smart00178      160 LEVFMCSVVRRMGYGEGFKWLSQY  183 (184)
T ss_pred             eEEEEeecccCCChHHHHHHHHhh
Confidence            569999999999999999999865

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>cd04151 Arl1 Arl1 subfamily

Probab=99.90  E-value=1e-22  Score=141.79  Aligned_cols=150  Identities=17%  Similarity=0.139  Sum_probs=93.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCccceeecCCCCce-eEE-EEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHHHHhc
Q 029158           23 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT-QTI-NFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVST  100 (198)
Q Consensus        23 ~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t-~~~-~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~  100 (198)
                      +|+++|.+|+|||||++++..... ..   +.++. ... .+...+..+.+|||||...          +..+.+.++. 
T Consensus         1 kv~lvG~~~~GKTsl~~~l~~~~~-~~---~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~----------~~~~~~~~~~-   65 (158)
T cd04151           1 RILILGLDNAGKTTILYRLQLGEV-VT---TIPTIGFNVETVTYKNLKFQVWDLGGQTS----------IRPYWRCYYS-   65 (158)
T ss_pred             CEEEECCCCCCHHHHHHHHccCCC-cC---cCCccCcCeEEEEECCEEEEEEECCCCHH----------HHHHHHHHhc-
Confidence            589999999999999999977632 11   11111 111 1222356799999999621          1223334443 


Q ss_pred             ccccceEEEEEeCCCCCC--cCcHHHHHHHHh---hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEec
Q 029158          101 RVSLKRVCLLIDTKWGVK--PRDHELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVS  175 (198)
Q Consensus       101 ~~~~d~vi~v~d~~~~~~--~~~~~~~~~~~~---~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~S  175 (198)
                        .+|++++|+|+++...  ....++...++.   .+.|+++|+||+|+.......+....+..  ........+++++|
T Consensus        66 --~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~i~~~~~~--~~~~~~~~~~~~~S  141 (158)
T cd04151          66 --NTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALSEAEISEKLGL--SELKDRTWSIFKTS  141 (158)
T ss_pred             --CCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCCHHHHHHHhCc--cccCCCcEEEEEee
Confidence              3999999999976311  111223333332   36899999999999754322222121110  01111235799999


Q ss_pred             cCCCCChHHHHHHHHH
Q 029158          176 SKSGAGIRSLRTVLSK  191 (198)
Q Consensus       176 a~~~~gi~~l~~~i~~  191 (198)
                      |++|.|+++++++|.+
T Consensus       142 a~~~~gi~~l~~~l~~  157 (158)
T cd04151         142 AIKGEGLDEGMDWLVN  157 (158)
T ss_pred             ccCCCCHHHHHHHHhc
Confidence            9999999999999864

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=99.90  E-value=1.5e-22  Score=135.66  Aligned_cols=140  Identities=23%  Similarity=0.284  Sum_probs=97.2

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEeCCceEEEeCCC-CccccchhHHHHHHHHHHHHHHhc
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPG-YGFAYAKEEVKDAWEELVKEYVST  100 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~iiDtpG-~~~~~~~~~~~~~~~~~~~~~~~~  100 (198)
                      .||+++|++|||||||+++|.+.+ .     ...-|+.+.+..     .+||||| +.+.          ..+....+..
T Consensus         2 krimliG~~g~GKTTL~q~L~~~~-~-----~~~KTq~i~~~~-----~~IDTPGEyiE~----------~~~y~aLi~t   60 (143)
T PF10662_consen    2 KRIMLIGPSGSGKTTLAQALNGEE-I-----RYKKTQAIEYYD-----NTIDTPGEYIEN----------PRFYHALIVT   60 (143)
T ss_pred             ceEEEECCCCCCHHHHHHHHcCCC-C-----CcCccceeEecc-----cEEECChhheeC----------HHHHHHHHHH
Confidence            589999999999999999999873 1     112344454432     4599999 3332          3445555556


Q ss_pred             ccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCC-CcHHHHHHHHHHHHHHHhccCCCCCcEEeccCCC
Q 029158          101 RVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV-FPIDVARRAMQIEESLKANNSLVQPVMMVSSKSG  179 (198)
Q Consensus       101 ~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~~  179 (198)
                      ...+|.|+++.|+++....-.-.+   ....+.|+|-|+||+|+. +..+.+...+.++..    .  .-.+|.+|+.+|
T Consensus        61 a~dad~V~ll~dat~~~~~~pP~f---a~~f~~pvIGVITK~Dl~~~~~~i~~a~~~L~~a----G--~~~if~vS~~~~  131 (143)
T PF10662_consen   61 AQDADVVLLLQDATEPRSVFPPGF---ASMFNKPVIGVITKIDLPSDDANIERAKKWLKNA----G--VKEIFEVSAVTG  131 (143)
T ss_pred             HhhCCEEEEEecCCCCCccCCchh---hcccCCCEEEEEECccCccchhhHHHHHHHHHHc----C--CCCeEEEECCCC
Confidence            667999999999987432222222   233468999999999999 444444444444433    1  245799999999


Q ss_pred             CChHHHHHHHHH
Q 029158          180 AGIRSLRTVLSK  191 (198)
Q Consensus       180 ~gi~~l~~~i~~  191 (198)
                      +|+++|.++|.+
T Consensus       132 eGi~eL~~~L~~  143 (143)
T PF10662_consen  132 EGIEELKDYLEE  143 (143)
T ss_pred             cCHHHHHHHHhC
Confidence            999999999864

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>cd00880 Era_like Era (E

Probab=99.90  E-value=3.9e-22  Score=138.28  Aligned_cols=159  Identities=28%  Similarity=0.294  Sum_probs=107.8

Q ss_pred             EEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEe----CCceEEEeCCCCccccchhHHHHHHHHHHHHHHhcc
Q 029158           26 FAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL----GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTR  101 (198)
Q Consensus        26 ~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~----~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~  101 (198)
                      ++|++|+|||||++++++. .........+++........    ..++.+|||||+.+.......   +......+   .
T Consensus         1 i~G~~gsGKstl~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~---~~~~~~~~---~   73 (163)
T cd00880           1 LFGRTNAGKSSLLNALLGQ-EVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGRE---REELARRV---L   73 (163)
T ss_pred             CcCCCCCCHHHHHHHHhCc-cccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhh---HHHHHHHH---H
Confidence            5899999999999999987 33435555555554332221    568999999998664321110   01112222   2


Q ss_pred             cccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEeccCCCCC
Q 029158          102 VSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAG  181 (198)
Q Consensus       102 ~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~~~g  181 (198)
                      ..+|++++++|+..........+.......+.|+++|+||+|+...........  ............+++++||+++.|
T Consensus        74 ~~~d~il~v~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~sa~~~~~  151 (163)
T cd00880          74 ERADLILFVVDADLRADEEEEKLLELLRERGKPVLLVLNKIDLLPEEEEEELLE--LRLLILLLLLGLPVIAVSALTGEG  151 (163)
T ss_pred             HhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCeEEEEEEccccCChhhHHHHHH--HHHhhcccccCCceEEEeeeccCC
Confidence            348999999999986555555445555666899999999999998665544322  111222334468999999999999


Q ss_pred             hHHHHHHHHHhh
Q 029158          182 IRSLRTVLSKIA  193 (198)
Q Consensus       182 i~~l~~~i~~~~  193 (198)
                      ++++++++.+.+
T Consensus       152 v~~l~~~l~~~~  163 (163)
T cd00880         152 IDELREALIEAL  163 (163)
T ss_pred             HHHHHHHHHhhC
Confidence            999999998753

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=99.90  E-value=2.2e-22  Score=137.69  Aligned_cols=140  Identities=20%  Similarity=0.196  Sum_probs=89.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHHHHhccc
Q 029158           23 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRV  102 (198)
Q Consensus        23 ~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (198)
                      +|+++|.+|+|||||+++|.+.. .    .+. .|....+.     -.+|||||...     ..    ......+.....
T Consensus         2 kv~liG~~~vGKSsL~~~l~~~~-~----~~~-~t~~~~~~-----~~~iDt~G~~~-----~~----~~~~~~~~~~~~   61 (142)
T TIGR02528         2 RIMFIGSVGCGKTTLTQALQGEE-I----LYK-KTQAVEYN-----DGAIDTPGEYV-----EN----RRLYSALIVTAA   61 (142)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCc-c----ccc-cceeEEEc-----CeeecCchhhh-----hh----HHHHHHHHHHhh
Confidence            79999999999999999999873 1    121 23323322     17899999511     01    111222222345


Q ss_pred             ccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEeccCCCCCh
Q 029158          103 SLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGI  182 (198)
Q Consensus       103 ~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~~~gi  182 (198)
                      .+|++++|+|++++.+.....+...+   ..|+++|+||+|+.......   +..++.....  ...+++++||++|.|+
T Consensus        62 ~ad~vilv~d~~~~~s~~~~~~~~~~---~~p~ilv~NK~Dl~~~~~~~---~~~~~~~~~~--~~~~~~~~Sa~~~~gi  133 (142)
T TIGR02528        62 DADVIALVQSATDPESRFPPGFASIF---VKPVIGLVTKIDLAEADVDI---ERAKELLETA--GAEPIFEISSVDEQGL  133 (142)
T ss_pred             cCCEEEEEecCCCCCcCCChhHHHhc---cCCeEEEEEeeccCCcccCH---HHHHHHHHHc--CCCcEEEEecCCCCCH
Confidence            59999999999886655554444332   35999999999997532111   1122222211  1247999999999999


Q ss_pred             HHHHHHHH
Q 029158          183 RSLRTVLS  190 (198)
Q Consensus       183 ~~l~~~i~  190 (198)
                      +++++++.
T Consensus       134 ~~l~~~l~  141 (142)
T TIGR02528       134 EALVDYLN  141 (142)
T ss_pred             HHHHHHHh
Confidence            99999874

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>PLN00223 ADP-ribosylation factor; Provisional

Probab=99.90  E-value=3.9e-22  Score=141.83  Aligned_cols=155  Identities=16%  Similarity=0.175  Sum_probs=97.3

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE-EEEeCCceEEEeCCCCccccchhHHHHHHHHHHHHHH
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN-FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV   98 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~-~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~   98 (198)
                      ...+|+++|.+|+|||||++++..... ...  .+....+.. +...+..+.+|||||..          .+..+...++
T Consensus        16 ~~~ki~ivG~~~~GKTsl~~~l~~~~~-~~~--~pt~g~~~~~~~~~~~~~~i~D~~Gq~----------~~~~~~~~~~   82 (181)
T PLN00223         16 KEMRILMVGLDAAGKTTILYKLKLGEI-VTT--IPTIGFNVETVEYKNISFTVWDVGGQD----------KIRPLWRHYF   82 (181)
T ss_pred             CccEEEEECCCCCCHHHHHHHHccCCC-ccc--cCCcceeEEEEEECCEEEEEEECCCCH----------HHHHHHHHHh
Confidence            347899999999999999999987632 211  111111111 22235779999999951          2233444455


Q ss_pred             hcccccceEEEEEeCCCCCCcCc-HHHHH-HHHh---hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhc--cCCCCCc
Q 029158           99 STRVSLKRVCLLIDTKWGVKPRD-HELIS-LMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKAN--NSLVQPV  171 (198)
Q Consensus        99 ~~~~~~d~vi~v~d~~~~~~~~~-~~~~~-~~~~---~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~~v  171 (198)
                      ..   +|++++|+|+++...-.. ...+. .+..   .+.|+++|+||+|+....+.++    +.+.+...  ......+
T Consensus        83 ~~---a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~~~~~----~~~~l~l~~~~~~~~~~  155 (181)
T PLN00223         83 QN---TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAE----ITDKLGLHSLRQRHWYI  155 (181)
T ss_pred             cc---CCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCCCHHH----HHHHhCccccCCCceEE
Confidence            44   899999999986321111 11222 2221   2689999999999976544332    22222211  1112346


Q ss_pred             EEeccCCCCChHHHHHHHHHhhc
Q 029158          172 MMVSSKSGAGIRSLRTVLSKIAR  194 (198)
Q Consensus       172 ~~~Sa~~~~gi~~l~~~i~~~~~  194 (198)
                      +++||++|+|++++++||.+.+.
T Consensus       156 ~~~Sa~~g~gv~e~~~~l~~~~~  178 (181)
T PLN00223        156 QSTCATSGEGLYEGLDWLSNNIA  178 (181)
T ss_pred             EeccCCCCCCHHHHHHHHHHHHh
Confidence            68999999999999999987653

>cd01864 Rab19 Rab19 subfamily

Probab=99.90  E-value=5.6e-22  Score=139.05  Aligned_cols=156  Identities=18%  Similarity=0.166  Sum_probs=96.3

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE-EEEe--CCceEEEeCCCCccccchhHHHHHHHHHHHHH
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN-FFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY   97 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~-~~~~--~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~   97 (198)
                      ..+|+++|++|+|||||++++.+...........++..... +...  ...+.+|||||.          +.+..+...+
T Consensus         3 ~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~----------~~~~~~~~~~   72 (165)
T cd01864           3 LFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQ----------ERFRTITQSY   72 (165)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCCh----------HHHHHHHHHH
Confidence            46899999999999999999987632111111111111111 1111  247899999994          1223333344


Q ss_pred             HhcccccceEEEEEeCCCCCCcCc-HHHHHHHHh---hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEE
Q 029158           98 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMM  173 (198)
Q Consensus        98 ~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~---~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  173 (198)
                      +.   .+|++++++|+++...-.. ..++..+..   .+.|+++|+||+|+.......  .+...+.....  ...++++
T Consensus        73 ~~---~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~--~~~~~~~~~~~--~~~~~~e  145 (165)
T cd01864          73 YR---SANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREVL--FEEACTLAEKN--GMLAVLE  145 (165)
T ss_pred             hc---cCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccccC--HHHHHHHHHHc--CCcEEEE
Confidence            43   3899999999987422222 344554443   368999999999997543211  11111111111  1246899


Q ss_pred             eccCCCCChHHHHHHHHHhh
Q 029158          174 VSSKSGAGIRSLRTVLSKIA  193 (198)
Q Consensus       174 ~Sa~~~~gi~~l~~~i~~~~  193 (198)
                      +||++|.|+++++++|.+.+
T Consensus       146 ~Sa~~~~~v~~~~~~l~~~l  165 (165)
T cd01864         146 TSAKESQNVEEAFLLMATEL  165 (165)
T ss_pred             EECCCCCCHHHHHHHHHHhC
Confidence            99999999999999998653

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=99.90  E-value=3.6e-22  Score=139.70  Aligned_cols=153  Identities=16%  Similarity=0.152  Sum_probs=98.3

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE-----EEEeCCceEEEeCCCCccccchhHHHHHHHHHHH
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN-----FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVK   95 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~-----~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~   95 (198)
                      ..+|+++|.+|+|||||++++++..   ....+.+++.+..     +......+.+|||||..+          +..+..
T Consensus         2 ~~ki~i~G~~~~GKtsl~~~~~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~----------~~~~~~   68 (164)
T cd04145           2 TYKLVVVGGGGVGKSALTIQFIQSY---FVTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEE----------FSAMRE   68 (164)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCC---CCcccCCCccceEEEEEEECCEEEEEEEEECCCCcc----------hhHHHH
Confidence            3589999999999999999999873   2333334433211     111234688999999632          233344


Q ss_pred             HHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHh----hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCC
Q 029158           96 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQP  170 (198)
Q Consensus        96 ~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~----~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (198)
                      .++..   +|++++|+|+++..+... ..++..+..    .+.|+++|+||+|+........  +...+....   ...+
T Consensus        69 ~~~~~---~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~--~~~~~~~~~---~~~~  140 (164)
T cd04145          69 QYMRT---GEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSR--EEGQELARK---LKIP  140 (164)
T ss_pred             HHHhh---CCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecH--HHHHHHHHH---cCCc
Confidence            44443   899999999986322111 223333322    3689999999999976432111  112222221   1468


Q ss_pred             cEEeccCCCCChHHHHHHHHHhhc
Q 029158          171 VMMVSSKSGAGIRSLRTVLSKIAR  194 (198)
Q Consensus       171 v~~~Sa~~~~gi~~l~~~i~~~~~  194 (198)
                      ++++||++|.|+++++++|.+.++
T Consensus       141 ~~~~Sa~~~~~i~~l~~~l~~~~~  164 (164)
T cd04145         141 YIETSAKDRLNVDKAFHDLVRVIR  164 (164)
T ss_pred             EEEeeCCCCCCHHHHHHHHHHhhC
Confidence            999999999999999999987653

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>cd01893 Miro1 Miro1 subfamily

Probab=99.90  E-value=2.4e-22  Score=141.10  Aligned_cols=151  Identities=15%  Similarity=0.165  Sum_probs=97.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCccceeecCCCCc----eeEEEEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHHHH
Q 029158           23 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGL----TQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV   98 (198)
Q Consensus        23 ~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~----t~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~   98 (198)
                      +|+++|.+|+|||||++++.+... .  ..++.+    +....+......+.+|||||....          ......++
T Consensus         2 kv~ivG~~~vGKTsl~~~l~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----------~~~~~~~~   68 (166)
T cd01893           2 RIVLIGDEGVGKSSLIMSLVSEEF-P--ENVPRVLPEITIPADVTPERVPTTIVDTSSRPQD----------RANLAAEI   68 (166)
T ss_pred             EEEEECCCCCCHHHHHHHHHhCcC-C--ccCCCcccceEeeeeecCCeEEEEEEeCCCchhh----------hHHHhhhc
Confidence            799999999999999999998742 1  222222    222222223567899999996321          11222233


Q ss_pred             hcccccceEEEEEeCCCCCCcCc--HHHHHHHHh--hCCcEEEEEeccCCCCcHHH---HHHHHHHHHHHHhccCCCCCc
Q 029158           99 STRVSLKRVCLLIDTKWGVKPRD--HELISLMER--SQTKYQVVLTKTDTVFPIDV---ARRAMQIEESLKANNSLVQPV  171 (198)
Q Consensus        99 ~~~~~~d~vi~v~d~~~~~~~~~--~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~~---~~~~~~~~~~~~~~~~~~~~v  171 (198)
                         ..+|++++|+|+.+......  ..++..+..  .+.|+++|+||+|+.+....   ++....+.+.+..    ..++
T Consensus        69 ---~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~----~~~~  141 (166)
T cd01893          69 ---RKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFRE----IETC  141 (166)
T ss_pred             ---ccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhc----ccEE
Confidence               44899999999876433222  234444443  26899999999999765432   1111222222211    1479


Q ss_pred             EEeccCCCCChHHHHHHHHHhh
Q 029158          172 MMVSSKSGAGIRSLRTVLSKIA  193 (198)
Q Consensus       172 ~~~Sa~~~~gi~~l~~~i~~~~  193 (198)
                      +++||+++.|++++++.+.+.+
T Consensus       142 ~e~Sa~~~~~v~~lf~~~~~~~  163 (166)
T cd01893         142 VECSAKTLINVSEVFYYAQKAV  163 (166)
T ss_pred             EEeccccccCHHHHHHHHHHHh
Confidence            9999999999999999988765

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd04136 Rap_like Rap-like subfamily

Probab=99.90  E-value=1.4e-22  Score=141.59  Aligned_cols=151  Identities=16%  Similarity=0.108  Sum_probs=96.0

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeE-----EEEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHH
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT-----INFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE   96 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~-----~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~   96 (198)
                      .+|+++|.+|+|||||+++++....   ...+.+++.+     .........+.+|||||...          +..+...
T Consensus         2 ~ki~i~G~~~vGKTsl~~~~~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~----------~~~~~~~   68 (163)
T cd04136           2 YKVVVLGSGGVGKSALTVQFVQGIF---VEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQ----------FTAMRDL   68 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCC---CcccCCchhhhEEEEEEECCEEEEEEEEECCCccc----------cchHHHH
Confidence            5899999999999999999998732   2333333322     11112235678999999522          1333334


Q ss_pred             HHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHh----hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCc
Q 029158           97 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPV  171 (198)
Q Consensus        97 ~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~----~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v  171 (198)
                      ++..   +|++++|+|.++..+... ..++..+..    .+.|+++|+||+|+........  +...+... .  ...++
T Consensus        69 ~~~~---~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~--~~~~~~~~-~--~~~~~  140 (163)
T cd04136          69 YIKN---GQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSR--EEGQALAR-Q--WGCPF  140 (163)
T ss_pred             Hhhc---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecH--HHHHHHHH-H--cCCeE
Confidence            4443   899999999976322211 233344432    2589999999999975332211  11111111 1  13789


Q ss_pred             EEeccCCCCChHHHHHHHHHhh
Q 029158          172 MMVSSKSGAGIRSLRTVLSKIA  193 (198)
Q Consensus       172 ~~~Sa~~~~gi~~l~~~i~~~~  193 (198)
                      +++||++|.|++++++++.+.+
T Consensus       141 ~~~Sa~~~~~v~~l~~~l~~~~  162 (163)
T cd04136         141 YETSAKSKINVDEVFADLVRQI  162 (163)
T ss_pred             EEecCCCCCCHHHHHHHHHHhc
Confidence            9999999999999999998754

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>TIGR00487 IF-2 translation initiation factor IF-2

Probab=99.90  E-value=4.2e-22  Score=162.93  Aligned_cols=158  Identities=21%  Similarity=0.272  Sum_probs=111.3

Q ss_pred             CCCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEe---CC-ceEEEeCCCCccccchhHHHHHHHHH
Q 029158           18 APDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GT-KLCLVDLPGYGFAYAKEEVKDAWEEL   93 (198)
Q Consensus        18 ~~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~-~~~iiDtpG~~~~~~~~~~~~~~~~~   93 (198)
                      ..+.|+|+++|.+++|||||+++|.+.. +. ....+++|.+...+..   +. .+.||||||+..             +
T Consensus        84 ~~r~p~V~I~Ghvd~GKTSLl~~l~~~~-v~-~~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~-------------F  148 (587)
T TIGR00487        84 VERPPVVTIMGHVDHGKTSLLDSIRKTK-VA-QGEAGGITQHIGAYHVENEDGKMITFLDTPGHEA-------------F  148 (587)
T ss_pred             ccCCCEEEEECCCCCCHHHHHHHHHhCC-cc-cccCCceeecceEEEEEECCCcEEEEEECCCCcc-------------h
Confidence            4567899999999999999999999873 22 2334556665443221   33 799999999722             2


Q ss_pred             HHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHH--HHhccCCCCCc
Q 029158           94 VKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEES--LKANNSLVQPV  171 (198)
Q Consensus        94 ~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~--~~~~~~~~~~v  171 (198)
                      ..........+|++++|+|+.++......+.+..+...++|+++++||+|+.... .++....+.+.  ....+....++
T Consensus       149 ~~~r~rga~~aDiaILVVda~dgv~~qT~e~i~~~~~~~vPiIVviNKiDl~~~~-~e~v~~~L~~~g~~~~~~~~~~~~  227 (587)
T TIGR00487       149 TSMRARGAKVTDIVVLVVAADDGVMPQTIEAISHAKAANVPIIVAINKIDKPEAN-PDRVKQELSEYGLVPEDWGGDTIF  227 (587)
T ss_pred             hhHHHhhhccCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcccccCC-HHHHHHHHHHhhhhHHhcCCCceE
Confidence            2222334556999999999998887777888877777789999999999996532 12222232221  11112224679


Q ss_pred             EEeccCCCCChHHHHHHHHH
Q 029158          172 MMVSSKSGAGIRSLRTVLSK  191 (198)
Q Consensus       172 ~~~Sa~~~~gi~~l~~~i~~  191 (198)
                      +++||++|+|+++++++|..
T Consensus       228 v~iSAktGeGI~eLl~~I~~  247 (587)
T TIGR00487       228 VPVSALTGDGIDELLDMILL  247 (587)
T ss_pred             EEEECCCCCChHHHHHhhhh
Confidence            99999999999999999864

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.

>PRK15467 ethanolamine utilization protein EutP; Provisional

Probab=99.90  E-value=5.1e-22  Score=138.16  Aligned_cols=146  Identities=20%  Similarity=0.278  Sum_probs=95.3

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHHHHhcc
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTR  101 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~  101 (198)
                      .+|+++|.+|+|||||+++|.+....      ...+....+...    .+|||||.....         ......++...
T Consensus         2 ~~i~~iG~~~~GKstl~~~l~~~~~~------~~~~~~v~~~~~----~~iDtpG~~~~~---------~~~~~~~~~~~   62 (158)
T PRK15467          2 KRIAFVGAVGAGKTTLFNALQGNYTL------ARKTQAVEFNDK----GDIDTPGEYFSH---------PRWYHALITTL   62 (158)
T ss_pred             cEEEEECCCCCCHHHHHHHHcCCCcc------CccceEEEECCC----CcccCCccccCC---------HHHHHHHHHHH
Confidence            37999999999999999999876311      123333333222    269999963321         11222223334


Q ss_pred             cccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEeccCCCCC
Q 029158          102 VSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAG  181 (198)
Q Consensus       102 ~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~~~g  181 (198)
                      ..+|++++|+|++.+......+..+ + ..++|+++++||+|+.... .+.    +.+.+... ....|++++||++|+|
T Consensus        63 ~~ad~il~v~d~~~~~s~~~~~~~~-~-~~~~~ii~v~nK~Dl~~~~-~~~----~~~~~~~~-~~~~p~~~~Sa~~g~g  134 (158)
T PRK15467         63 QDVDMLIYVHGANDPESRLPAGLLD-I-GVSKRQIAVISKTDMPDAD-VAA----TRKLLLET-GFEEPIFELNSHDPQS  134 (158)
T ss_pred             hcCCEEEEEEeCCCcccccCHHHHh-c-cCCCCeEEEEEccccCccc-HHH----HHHHHHHc-CCCCCEEEEECCCccC
Confidence            5699999999998764444433333 2 2368999999999996532 222    22222222 2236999999999999


Q ss_pred             hHHHHHHHHHhhc
Q 029158          182 IRSLRTVLSKIAR  194 (198)
Q Consensus       182 i~~l~~~i~~~~~  194 (198)
                      ++++++++.+...
T Consensus       135 i~~l~~~l~~~~~  147 (158)
T PRK15467        135 VQQLVDYLASLTK  147 (158)
T ss_pred             HHHHHHHHHHhch
Confidence            9999999988764

>cd04158 ARD1 ARD1 subfamily

Probab=99.89  E-value=1e-22  Score=143.39  Aligned_cols=153  Identities=18%  Similarity=0.154  Sum_probs=94.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeE--EE-EEEeCCceEEEeCCCCccccchhHHHHHHHHHHHHHHh
Q 029158           23 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT--IN-FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS   99 (198)
Q Consensus        23 ~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~--~~-~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~   99 (198)
                      +|+++|.+|+|||||++++.+.. .   ..+. +|..  .. +...+..+.+|||||....          ......++.
T Consensus         1 ~vvlvG~~~~GKTsl~~~l~~~~-~---~~~~-~T~~~~~~~~~~~~~~i~l~Dt~G~~~~----------~~~~~~~~~   65 (169)
T cd04158           1 RVVTLGLDGAGKTTILFKLKQDE-F---MQPI-PTIGFNVETVEYKNLKFTIWDVGGKHKL----------RPLWKHYYL   65 (169)
T ss_pred             CEEEECCCCCCHHHHHHHHhcCC-C---CCcC-CcCceeEEEEEECCEEEEEEECCCChhc----------chHHHHHhc
Confidence            58999999999999999999873 1   1222 2222  21 2233678999999996321          222233333


Q ss_pred             cccccceEEEEEeCCCC--CCcCcHHHHHHHHh---hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEe
Q 029158          100 TRVSLKRVCLLIDTKWG--VKPRDHELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMV  174 (198)
Q Consensus       100 ~~~~~d~vi~v~d~~~~--~~~~~~~~~~~~~~---~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  174 (198)
                         .+|++++|+|+++.  +.....++.+.+..   .+.|+++|+||+|+......++..+.+ ............++++
T Consensus        66 ---~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  141 (169)
T cd04158          66 ---NTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEMTELL-SLHKLCCGRSWYIQGC  141 (169)
T ss_pred             ---cCCEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccCCCHHHHHHHh-CCccccCCCcEEEEeC
Confidence               38999999999763  11121222233322   248999999999997543332222221 1000001112468899


Q ss_pred             ccCCCCChHHHHHHHHHhhc
Q 029158          175 SSKSGAGIRSLRTVLSKIAR  194 (198)
Q Consensus       175 Sa~~~~gi~~l~~~i~~~~~  194 (198)
                      ||++|.|++++++||.+.+.
T Consensus       142 Sa~~g~gv~~~f~~l~~~~~  161 (169)
T cd04158         142 DARSGMGLYEGLDWLSRQLV  161 (169)
T ss_pred             cCCCCCCHHHHHHHHHHHHh
Confidence            99999999999999987654

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra

>cd04121 Rab40 Rab40 subfamily

Probab=99.89  E-value=3.4e-22  Score=142.75  Aligned_cols=153  Identities=20%  Similarity=0.139  Sum_probs=100.5

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCc-eeEE-----EEEEeCCceEEEeCCCCccccchhHHHHHHHHH
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGL-TQTI-----NFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEEL   93 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~-t~~~-----~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~   93 (198)
                      ...+|+++|..|+|||||+.++.....   ...+.++ +.+.     .+......+.+|||+|..          .+..+
T Consensus         5 ~~~KivviG~~~vGKTsll~~~~~~~~---~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~----------~~~~l   71 (189)
T cd04121           5 YLLKFLLVGDSDVGKGEILASLQDGST---ESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQG----------RFCTI   71 (189)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCC---CCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcH----------HHHHH
Confidence            457899999999999999999998632   2222211 1221     111223678999999952          23444


Q ss_pred             HHHHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHhh--CCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCC
Q 029158           94 VKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS--QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQP  170 (198)
Q Consensus        94 ~~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~~--~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (198)
                      ...|+.   .+|++++|+|.++..+-.. ..|++.+...  +.|+|+|+||+|+.......  .+..++....   .+.+
T Consensus        72 ~~~~~~---~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~~~~piilVGNK~DL~~~~~v~--~~~~~~~a~~---~~~~  143 (189)
T cd04121          72 FRSYSR---GAQGIILVYDITNRWSFDGIDRWIKEIDEHAPGVPKILVGNRLHLAFKRQVA--TEQAQAYAER---NGMT  143 (189)
T ss_pred             HHHHhc---CCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccchhccCCC--HHHHHHHHHH---cCCE
Confidence            445554   3899999999987332222 3455555442  68999999999996532211  1122222221   2478


Q ss_pred             cEEeccCCCCChHHHHHHHHHhh
Q 029158          171 VMMVSSKSGAGIRSLRTVLSKIA  193 (198)
Q Consensus       171 v~~~Sa~~~~gi~~l~~~i~~~~  193 (198)
                      ++++||++|.|++++|++|.+.+
T Consensus       144 ~~e~SAk~g~~V~~~F~~l~~~i  166 (189)
T cd04121         144 FFEVSPLCNFNITESFTELARIV  166 (189)
T ss_pred             EEEecCCCCCCHHHHHHHHHHHH
Confidence            99999999999999999998754

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=99.89  E-value=6.1e-22  Score=138.94  Aligned_cols=151  Identities=16%  Similarity=0.098  Sum_probs=95.6

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCce-eE-----EEEEEeCCceEEEeCCCCccccchhHHHHHHHHHHH
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT-QT-----INFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVK   95 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t-~~-----~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~   95 (198)
                      .+|+++|++|+|||||++++++.....   .+.++. .+     .........+.+|||||..          .+..+..
T Consensus         1 ~ki~~vG~~~vGKTsli~~l~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~----------~~~~~~~   67 (168)
T cd04119           1 IKVISMGNSGVGKSCIIKRYCEGRFVS---KYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHP----------EYLEVRN   67 (168)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCC---CCCCccceeEEEEEEEECCeEEEEEEEECCccH----------HHHHHHH
Confidence            379999999999999999999984222   222221 11     1112224678999999952          1233334


Q ss_pred             HHHhcccccceEEEEEeCCCCCCcC-cHHHHHHHHh--------hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccC
Q 029158           96 EYVSTRVSLKRVCLLIDTKWGVKPR-DHELISLMER--------SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNS  166 (198)
Q Consensus        96 ~~~~~~~~~d~vi~v~d~~~~~~~~-~~~~~~~~~~--------~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~  166 (198)
                      .++..   +|++++|+|.++..+.. ...++..+..        .+.|+++|+||+|+.......  .+..+.....   
T Consensus        68 ~~~~~---~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~--~~~~~~~~~~---  139 (168)
T cd04119          68 EFYKD---TQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVS--EDEGRLWAES---  139 (168)
T ss_pred             HHhcc---CCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccC--HHHHHHHHHH---
Confidence            44443   89999999998632211 1234443332        357999999999997422111  1111111111   


Q ss_pred             CCCCcEEeccCCCCChHHHHHHHHHhh
Q 029158          167 LVQPVMMVSSKSGAGIRSLRTVLSKIA  193 (198)
Q Consensus       167 ~~~~v~~~Sa~~~~gi~~l~~~i~~~~  193 (198)
                      ...+++++||++++|+++++++|.+.+
T Consensus       140 ~~~~~~~~Sa~~~~gi~~l~~~l~~~l  166 (168)
T cd04119         140 KGFKYFETSACTGEGVNEMFQTLFSSI  166 (168)
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            136899999999999999999998754

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>cd04175 Rap1 Rap1 subgroup

Probab=99.89  E-value=1.1e-22  Score=142.49  Aligned_cols=151  Identities=13%  Similarity=0.088  Sum_probs=96.7

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEE---E--EEEeCCceEEEeCCCCccccchhHHHHHHHHHHHH
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---N--FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE   96 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~---~--~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~   96 (198)
                      .+|+++|.+|+|||||+++++...   ....+.+++.+.   .  +......+.+|||||...          +..+...
T Consensus         2 ~ki~~~G~~~~GKTsli~~~~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~----------~~~~~~~   68 (164)
T cd04175           2 YKLVVLGSGGVGKSALTVQFVQGI---FVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQ----------FTAMRDL   68 (164)
T ss_pred             cEEEEECCCCCCHHHHHHHHHhCC---CCcccCCcchheEEEEEEECCEEEEEEEEECCCccc----------chhHHHH
Confidence            579999999999999999999762   223333444321   1  211235678999999522          2333444


Q ss_pred             HHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHh----hCCcEEEEEeccCCCCcHHHH-HHHHHHHHHHHhccCCCCC
Q 029158           97 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPIDVA-RRAMQIEESLKANNSLVQP  170 (198)
Q Consensus        97 ~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~----~~~p~iiv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~  170 (198)
                      ++..   +|++++|+|.++..+... .+++..+..    .+.|+++|+||+|+....... .....+.+.      ...+
T Consensus        69 ~~~~---~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~------~~~~  139 (164)
T cd04175          69 YMKN---GQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQ------WGCA  139 (164)
T ss_pred             HHhh---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHHHH------hCCE
Confidence            4444   899999999875322111 223333322    368999999999997532211 111222211      1368


Q ss_pred             cEEeccCCCCChHHHHHHHHHhhc
Q 029158          171 VMMVSSKSGAGIRSLRTVLSKIAR  194 (198)
Q Consensus       171 v~~~Sa~~~~gi~~l~~~i~~~~~  194 (198)
                      ++++||++|.|++++++++.+.+.
T Consensus       140 ~~~~Sa~~~~~v~~~~~~l~~~l~  163 (164)
T cd04175         140 FLETSAKAKINVNEIFYDLVRQIN  163 (164)
T ss_pred             EEEeeCCCCCCHHHHHHHHHHHhh
Confidence            999999999999999999987653

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>cd04140 ARHI_like ARHI subfamily

Probab=99.89  E-value=4.8e-22  Score=139.46  Aligned_cols=150  Identities=15%  Similarity=0.075  Sum_probs=94.3

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeE---E--EEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHH
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT---I--NFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE   96 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~---~--~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~   96 (198)
                      .+|+++|.+|+|||||++++++....   ..+.++...   .  ........+.+|||||....          ..+...
T Consensus         2 ~kv~~vG~~~vGKTsli~~~~~~~f~---~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~----------~~~~~~   68 (165)
T cd04140           2 YRVVVFGAGGVGKSSLVLRFVKGTFR---ESYIPTIEDTYRQVISCSKNICTLQITDTTGSHQF----------PAMQRL   68 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCC---CCcCCcchheEEEEEEECCEEEEEEEEECCCCCcc----------hHHHHH
Confidence            57999999999999999999987321   122222111   1  11112356889999996321          222233


Q ss_pred             HHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHh------hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCC
Q 029158           97 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER------SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQ  169 (198)
Q Consensus        97 ~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~------~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  169 (198)
                      ++.   .+|++++|+|.++..+... ..+++.+..      .+.|+++|+||+|+....+...  +.......   ....
T Consensus        69 ~~~---~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~--~~~~~~~~---~~~~  140 (165)
T cd04140          69 SIS---KGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSS--NEGAACAT---EWNC  140 (165)
T ss_pred             Hhh---cCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecH--HHHHHHHH---HhCC
Confidence            333   3899999999986433222 233444433      3589999999999976332211  11111111   1246


Q ss_pred             CcEEeccCCCCChHHHHHHHHHh
Q 029158          170 PVMMVSSKSGAGIRSLRTVLSKI  192 (198)
Q Consensus       170 ~v~~~Sa~~~~gi~~l~~~i~~~  192 (198)
                      +++++||++|+|+++++++|...
T Consensus       141 ~~~e~SA~~g~~v~~~f~~l~~~  163 (165)
T cd04140         141 AFMETSAKTNHNVQELFQELLNL  163 (165)
T ss_pred             cEEEeecCCCCCHHHHHHHHHhc
Confidence            89999999999999999999764

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=99.89  E-value=2.5e-22  Score=142.99  Aligned_cols=156  Identities=13%  Similarity=0.101  Sum_probs=96.2

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCcee-EE-EEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHHH
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQ-TI-NFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY   97 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~-~~-~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~   97 (198)
                      ...+|+++|++|+|||||++++......    .+.+|+. .. .+...+..+.+|||||..          .+..+...+
T Consensus        16 ~~~kv~lvG~~~vGKTsli~~~~~~~~~----~~~~T~~~~~~~~~~~~~~~~l~D~~G~~----------~~~~~~~~~   81 (182)
T PTZ00133         16 KEVRILMVGLDAAGKTTILYKLKLGEVV----TTIPTIGFNVETVEYKNLKFTMWDVGGQD----------KLRPLWRHY   81 (182)
T ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCcc----ccCCccccceEEEEECCEEEEEEECCCCH----------hHHHHHHHH
Confidence            3478999999999999999999765322    1222211 11 122235779999999952          123334444


Q ss_pred             HhcccccceEEEEEeCCCCC--CcCcHHHHHHHHh---hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcE
Q 029158           98 VSTRVSLKRVCLLIDTKWGV--KPRDHELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVM  172 (198)
Q Consensus        98 ~~~~~~~d~vi~v~d~~~~~--~~~~~~~~~~~~~---~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~  172 (198)
                      +..   +|++++|+|+++..  .....++.+.+..   .+.|+++|+||+|+......++....+..  ........+++
T Consensus        82 ~~~---ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~l~~--~~~~~~~~~~~  156 (182)
T PTZ00133         82 YQN---TNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAMSTTEVTEKLGL--HSVRQRNWYIQ  156 (182)
T ss_pred             hcC---CCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCCCHHHHHHHhCC--CcccCCcEEEE
Confidence            444   89999999997521  1111222222222   25899999999999754332222222111  01111124567


Q ss_pred             EeccCCCCChHHHHHHHHHhhc
Q 029158          173 MVSSKSGAGIRSLRTVLSKIAR  194 (198)
Q Consensus       173 ~~Sa~~~~gi~~l~~~i~~~~~  194 (198)
                      ++||++|+|+++++++|.+.+.
T Consensus       157 ~~Sa~tg~gv~e~~~~l~~~i~  178 (182)
T PTZ00133        157 GCCATTAQGLYEGLDWLSANIK  178 (182)
T ss_pred             eeeCCCCCCHHHHHHHHHHHHH
Confidence            8999999999999999987653

>cd04120 Rab12 Rab12 subfamily

Probab=99.89  E-value=5.6e-22  Score=142.95  Aligned_cols=151  Identities=15%  Similarity=0.161  Sum_probs=97.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCccceeecCCCCce-eEEE-----EEEeCCceEEEeCCCCccccchhHHHHHHHHHHHH
Q 029158           23 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT-QTIN-----FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE   96 (198)
Q Consensus        23 ~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t-~~~~-----~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~   96 (198)
                      .|+++|..|+|||||+.++....   ....+..|. .+..     +......+.+|||+|.          +.+..+...
T Consensus         2 ~vvvlG~~gVGKTSli~r~~~~~---f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGq----------e~~~~l~~~   68 (202)
T cd04120           2 QVIIIGSRGVGKTSLMRRFTDDT---FCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQ----------ERFNSITSA   68 (202)
T ss_pred             EEEEECcCCCCHHHHHHHHHhCC---CCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCc----------hhhHHHHHH
Confidence            68999999999999999999873   222232221 1221     1112367899999995          223444555


Q ss_pred             HHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHh---hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcE
Q 029158           97 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVM  172 (198)
Q Consensus        97 ~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~---~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~  172 (198)
                      |+..   +|++++|+|.++..+-.. ..|+..+..   .+.|+++|+||+|+....+...  ...++.....  .+.+++
T Consensus        69 y~~~---ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~--~~~~~~a~~~--~~~~~~  141 (202)
T cd04120          69 YYRS---AKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREISR--QQGEKFAQQI--TGMRFC  141 (202)
T ss_pred             HhcC---CCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCH--HHHHHHHHhc--CCCEEE
Confidence            5554   899999999987322222 234444443   2589999999999975332211  1111111111  136799


Q ss_pred             EeccCCCCChHHHHHHHHHhh
Q 029158          173 MVSSKSGAGIRSLRTVLSKIA  193 (198)
Q Consensus       173 ~~Sa~~~~gi~~l~~~i~~~~  193 (198)
                      ++||++|.|++++|+++.+.+
T Consensus       142 etSAktg~gV~e~F~~l~~~~  162 (202)
T cd04120         142 EASAKDNFNVDEIFLKLVDDI  162 (202)
T ss_pred             EecCCCCCCHHHHHHHHHHHH
Confidence            999999999999999998765

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic

>PRK09554 feoB ferrous iron transport protein B; Reviewed

Probab=99.89  E-value=4e-22  Score=167.36  Aligned_cols=159  Identities=21%  Similarity=0.260  Sum_probs=115.0

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE---EEEeCCceEEEeCCCCccccc--h-hHHHHHHHHHH
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYA--K-EEVKDAWEELV   94 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~---~~~~~~~~~iiDtpG~~~~~~--~-~~~~~~~~~~~   94 (198)
                      ..+|+++|.+|+|||||+|+|.+.+  ..+++++++|.+..   +...+..+.++||||+.+-..  . ....   +...
T Consensus         3 ~~~IaLvG~pNvGKSTLfN~Ltg~~--~~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~---E~i~   77 (772)
T PRK09554          3 KLTIGLIGNPNSGKTTLFNQLTGAR--QRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLD---EQIA   77 (772)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhCCC--CccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHH---HHHH
Confidence            4579999999999999999999874  46788899987654   333467899999999754211  0 0111   2223


Q ss_pred             HHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEe
Q 029158           95 KEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMV  174 (198)
Q Consensus        95 ~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  174 (198)
                      +.++. ...+|++++|+|+++  .+....+..++.+.++|+++|+||+|+..........+.+++.+      +.|++++
T Consensus        78 ~~~l~-~~~aD~vI~VvDat~--ler~l~l~~ql~e~giPvIvVlNK~Dl~~~~~i~id~~~L~~~L------G~pVvpi  148 (772)
T PRK09554         78 CHYIL-SGDADLLINVVDASN--LERNLYLTLQLLELGIPCIVALNMLDIAEKQNIRIDIDALSARL------GCPVIPL  148 (772)
T ss_pred             HHHHh-ccCCCEEEEEecCCc--chhhHHHHHHHHHcCCCEEEEEEchhhhhccCcHHHHHHHHHHh------CCCEEEE
Confidence            33332 235899999999986  23445566777778999999999999975544333334444332      4799999


Q ss_pred             ccCCCCChHHHHHHHHHhh
Q 029158          175 SSKSGAGIRSLRTVLSKIA  193 (198)
Q Consensus       175 Sa~~~~gi~~l~~~i~~~~  193 (198)
                      ||++++|++++.+.+.+..
T Consensus       149 SA~~g~GIdeL~~~I~~~~  167 (772)
T PRK09554        149 VSTRGRGIEALKLAIDRHQ  167 (772)
T ss_pred             EeecCCCHHHHHHHHHHhh
Confidence            9999999999999998764

>CHL00189 infB translation initiation factor 2; Provisional

Probab=99.89  E-value=3.6e-22  Score=165.74  Aligned_cols=159  Identities=21%  Similarity=0.331  Sum_probs=110.9

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEE-------eCCceEEEeCCCCccccchhHHHHHHH
Q 029158           19 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK-------LGTKLCLVDLPGYGFAYAKEEVKDAWE   91 (198)
Q Consensus        19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~-------~~~~~~iiDtpG~~~~~~~~~~~~~~~   91 (198)
                      .+.|.|+++|.+++|||||+++|.+.. .. ....++.|.....+.       .+..+.||||||+.          .+.
T Consensus       242 ~r~p~V~IvGhvdvGKTSLld~L~~~~-~~-~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe----------~F~  309 (742)
T CHL00189        242 NRPPIVTILGHVDHGKTTLLDKIRKTQ-IA-QKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHE----------AFS  309 (742)
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHhcc-Cc-cccCCccccccceEEEEEEecCCceEEEEEECCcHH----------HHH
Confidence            467899999999999999999998863 22 222234444322111       24789999999961          222


Q ss_pred             HHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHH--HHhccCCCC
Q 029158           92 ELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEES--LKANNSLVQ  169 (198)
Q Consensus        92 ~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~--~~~~~~~~~  169 (198)
                      .+.   ......+|++++|+|+.++......+.+..+...++|+|+++||+|+.... .+.....+...  +....+...
T Consensus       310 ~mr---~rg~~~aDiaILVVDA~dGv~~QT~E~I~~~k~~~iPiIVViNKiDl~~~~-~e~v~~eL~~~~ll~e~~g~~v  385 (742)
T CHL00189        310 SMR---SRGANVTDIAILIIAADDGVKPQTIEAINYIQAANVPIIVAINKIDKANAN-TERIKQQLAKYNLIPEKWGGDT  385 (742)
T ss_pred             HHH---HHHHHHCCEEEEEEECcCCCChhhHHHHHHHHhcCceEEEEEECCCccccC-HHHHHHHHHHhccchHhhCCCc
Confidence            222   233345999999999998887777888888887889999999999997532 22222222211  111122347


Q ss_pred             CcEEeccCCCCChHHHHHHHHHhh
Q 029158          170 PVMMVSSKSGAGIRSLRTVLSKIA  193 (198)
Q Consensus       170 ~v~~~Sa~~~~gi~~l~~~i~~~~  193 (198)
                      +++++||++|.|+++|+++|....
T Consensus       386 pvv~VSAktG~GIdeLle~I~~l~  409 (742)
T CHL00189        386 PMIPISASQGTNIDKLLETILLLA  409 (742)
T ss_pred             eEEEEECCCCCCHHHHHHhhhhhh
Confidence            899999999999999999997754

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily

Probab=99.89  E-value=2.4e-22  Score=143.27  Aligned_cols=158  Identities=16%  Similarity=0.130  Sum_probs=95.0

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCce---eEEEEEE---eCCceEEEeCCCCccccchhHHHHHHHHHH
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT---QTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELV   94 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t---~~~~~~~---~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~   94 (198)
                      ..+|+++|.+|+|||||+++++....   ....+...   ....+..   .+..+.+|||||..          .+..+.
T Consensus         3 ~~kv~~vG~~~~GKTsli~~~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~----------~~~~~~   69 (183)
T cd04152           3 SLHIVMLGLDSAGKTTVLYRLKFNEF---VNTVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQE----------KLRPLW   69 (183)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCc---CCcCCccccceeEEEeeccCCCceEEEEEECCCcH----------hHHHHH
Confidence            45799999999999999999988632   12222111   1112211   24578999999951          122333


Q ss_pred             HHHHhcccccceEEEEEeCCCCCCcCc-HHHHHHH----HhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCC
Q 029158           95 KEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLM----ERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQ  169 (198)
Q Consensus        95 ~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~----~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  169 (198)
                      ..++.   .+|++++|+|+++.-.... ..++..+    ...+.|+++|+||+|+......++....+ ...........
T Consensus        70 ~~~~~---~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~~~-~~~~~~~~~~~  145 (183)
T cd04152          70 KSYTR---CTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNALSVSEVEKLL-ALHELSASTPW  145 (183)
T ss_pred             HHHhc---cCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccccCCHHHHHHHh-CccccCCCCce
Confidence            33333   3899999999976311111 1122222    22468999999999996432222211111 10000011125


Q ss_pred             CcEEeccCCCCChHHHHHHHHHhhcc
Q 029158          170 PVMMVSSKSGAGIRSLRTVLSKIARF  195 (198)
Q Consensus       170 ~v~~~Sa~~~~gi~~l~~~i~~~~~~  195 (198)
                      +++++||++|+|+++++++|.+.+..
T Consensus       146 ~~~~~SA~~~~gi~~l~~~l~~~l~~  171 (183)
T cd04152         146 HVQPACAIIGEGLQEGLEKLYEMILK  171 (183)
T ss_pred             EEEEeecccCCCHHHHHHHHHHHHHH
Confidence            68999999999999999999887643

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=99.89  E-value=8.4e-22  Score=141.73  Aligned_cols=151  Identities=23%  Similarity=0.247  Sum_probs=95.2

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCc-cceee-------------cCCCCceeE---EEEEEeCCceEEEeCCCCccccch
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQW-GVVRT-------------SDKPGLTQT---INFFKLGTKLCLVDLPGYGFAYAK   83 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~~-~~~~~-------------~~~~~~t~~---~~~~~~~~~~~iiDtpG~~~~~~~   83 (198)
                      .++|+++|.+++|||||+++|++.. .....             ....+++..   ..+...+..+.+|||||+.+    
T Consensus         2 ~r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~----   77 (194)
T cd01891           2 IRNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHAD----   77 (194)
T ss_pred             ccEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHH----
Confidence            4589999999999999999999631 11110             011222322   12333467899999999622    


Q ss_pred             hHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHh
Q 029158           84 EEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKA  163 (198)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~  163 (198)
                            +......++.   .+|++++|+|+.++.......++..+...+.|+++|+||+|+..... ....+.+.+.+..
T Consensus        78 ------~~~~~~~~~~---~~d~~ilV~d~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~-~~~~~~~~~~~~~  147 (194)
T cd01891          78 ------FGGEVERVLS---MVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPDARP-EEVVDEVFDLFIE  147 (194)
T ss_pred             ------HHHHHHHHHH---hcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECCCCCCCCH-HHHHHHHHHHHHH
Confidence                  1222333333   38999999999886544445556666666899999999999975322 2223333333322


Q ss_pred             c----cCCCCCcEEeccCCCCChHHH
Q 029158          164 N----NSLVQPVMMVSSKSGAGIRSL  185 (198)
Q Consensus       164 ~----~~~~~~v~~~Sa~~~~gi~~l  185 (198)
                      .    .....+++++||++|+|+.++
T Consensus       148 ~~~~~~~~~~~iv~~Sa~~g~~~~~~  173 (194)
T cd01891         148 LGATEEQLDFPVLYASAKNGWASLNL  173 (194)
T ss_pred             hCCccccCccCEEEeehhcccccccc
Confidence            1    122578999999999776443

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma

Probab=99.89  E-value=5.5e-22  Score=157.09  Aligned_cols=161  Identities=23%  Similarity=0.311  Sum_probs=113.7

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCccce--eecCCCCceeEEEEEE-----------------------------eCCc
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQWGVV--RTSDKPGLTQTINFFK-----------------------------LGTK   68 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~--~~~~~~~~t~~~~~~~-----------------------------~~~~   68 (198)
                      ...+|+++|.+++|||||+++|.+.. ..  ......+.|....+..                             ....
T Consensus         3 ~~~~i~iiG~~~~GKSTL~~~Lt~~~-~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (406)
T TIGR03680         3 PEVNIGMVGHVDHGKTTLTKALTGVW-TDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR   81 (406)
T ss_pred             ceEEEEEEccCCCCHHHHHHHHhCee-cccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence            45689999999999999999997641 10  0111122332222110                             1357


Q ss_pred             eEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCC-CcCcHHHHHHHHhhC-CcEEEEEeccCCCC
Q 029158           69 LCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGV-KPRDHELISLMERSQ-TKYQVVLTKTDTVF  146 (198)
Q Consensus        69 ~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~-~~~~~~~~~~~~~~~-~p~iiv~nK~Dl~~  146 (198)
                      +.++||||+             +.+...++.....+|++++|+|++++. .....+.+..+...+ .|+++|+||+|+.+
T Consensus        82 i~liDtPGh-------------~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~gi~~iIVvvNK~Dl~~  148 (406)
T TIGR03680        82 VSFVDAPGH-------------ETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEIIGIKNIVIVQNKIDLVS  148 (406)
T ss_pred             EEEEECCCH-------------HHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHcCCCeEEEEEEccccCC
Confidence            899999996             455566777777799999999999876 556667777666665 46899999999987


Q ss_pred             cHHHHHHHHHHHHHHHhccCCCCCcEEeccCCCCChHHHHHHHHHhhc
Q 029158          147 PIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR  194 (198)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~~~gi~~l~~~i~~~~~  194 (198)
                      .+...+..+.+.+.+........+++++||++|+|+++|+++|...+.
T Consensus       149 ~~~~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~  196 (406)
T TIGR03680       149 KEKALENYEEIKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFIP  196 (406)
T ss_pred             HHHHHHHHHHHHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCC
Confidence            655544445555544433233578999999999999999999998654

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.

>PRK05306 infB translation initiation factor IF-2; Validated

Probab=99.89  E-value=4e-22  Score=166.72  Aligned_cols=159  Identities=23%  Similarity=0.298  Sum_probs=113.4

Q ss_pred             CCCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEE---eCCceEEEeCCCCccccchhHHHHHHHHHH
Q 029158           18 APDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELV   94 (198)
Q Consensus        18 ~~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~   94 (198)
                      ..+.|.|+++|.+++|||||+++|.+.. +. .....++|.....+.   .+..+.||||||+..             +.
T Consensus       287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~-v~-~~e~~GIT~~iga~~v~~~~~~ItfiDTPGhe~-------------F~  351 (787)
T PRK05306        287 VPRPPVVTIMGHVDHGKTSLLDAIRKTN-VA-AGEAGGITQHIGAYQVETNGGKITFLDTPGHEA-------------FT  351 (787)
T ss_pred             ccCCCEEEEECCCCCCHHHHHHHHHhCC-cc-ccccCceeeeccEEEEEECCEEEEEEECCCCcc-------------ch
Confidence            4678999999999999999999998863 22 233445565543222   257899999999732             12


Q ss_pred             HHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHH--HHhccCCCCCcE
Q 029158           95 KEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEES--LKANNSLVQPVM  172 (198)
Q Consensus        95 ~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~--~~~~~~~~~~v~  172 (198)
                      ..+......+|++++|+|+.++......+.+..+...++|+|+++||+|+.... .+.....+.+.  +...++...+++
T Consensus       352 ~m~~rga~~aDiaILVVdAddGv~~qT~e~i~~a~~~~vPiIVviNKiDl~~a~-~e~V~~eL~~~~~~~e~~g~~vp~v  430 (787)
T PRK05306        352 AMRARGAQVTDIVVLVVAADDGVMPQTIEAINHAKAAGVPIIVAINKIDKPGAN-PDRVKQELSEYGLVPEEWGGDTIFV  430 (787)
T ss_pred             hHHHhhhhhCCEEEEEEECCCCCCHhHHHHHHHHHhcCCcEEEEEECccccccC-HHHHHHHHHHhcccHHHhCCCceEE
Confidence            222334455899999999999887888888888887899999999999997532 22222222221  111123347899


Q ss_pred             EeccCCCCChHHHHHHHHHh
Q 029158          173 MVSSKSGAGIRSLRTVLSKI  192 (198)
Q Consensus       173 ~~Sa~~~~gi~~l~~~i~~~  192 (198)
                      ++||++|+|+++++++|...
T Consensus       431 pvSAktG~GI~eLle~I~~~  450 (787)
T PRK05306        431 PVSAKTGEGIDELLEAILLQ  450 (787)
T ss_pred             EEeCCCCCCchHHHHhhhhh
Confidence            99999999999999998753

>cd04155 Arl3 Arl3 subfamily

Probab=99.89  E-value=2.4e-22  Score=141.92  Aligned_cols=157  Identities=18%  Similarity=0.220  Sum_probs=96.9

Q ss_pred             CCCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHHH
Q 029158           18 APDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY   97 (198)
Q Consensus        18 ~~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~   97 (198)
                      .....+|+++|++|+|||||++++.+.. .....+..+.+.. .+...+..+.+|||||...          +......+
T Consensus        11 ~~~~~~v~i~G~~g~GKStLl~~l~~~~-~~~~~~t~g~~~~-~i~~~~~~~~~~D~~G~~~----------~~~~~~~~   78 (173)
T cd04155          11 SSEEPRILILGLDNAGKTTILKQLASED-ISHITPTQGFNIK-TVQSDGFKLNVWDIGGQRA----------IRPYWRNY   78 (173)
T ss_pred             cCCccEEEEEccCCCCHHHHHHHHhcCC-CcccCCCCCcceE-EEEECCEEEEEEECCCCHH----------HHHHHHHH
Confidence            3457889999999999999999999873 2222222222111 1222367789999999521          12222333


Q ss_pred             HhcccccceEEEEEeCCCCCCcCc-HHHH-HHH---HhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcE
Q 029158           98 VSTRVSLKRVCLLIDTKWGVKPRD-HELI-SLM---ERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVM  172 (198)
Q Consensus        98 ~~~~~~~d~vi~v~d~~~~~~~~~-~~~~-~~~---~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~  172 (198)
                      +   ..+|++++|+|+........ ...+ ..+   ...+.|+++++||+|+....+.++..+.+.  +........+++
T Consensus        79 ~---~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~i~~~l~--~~~~~~~~~~~~  153 (173)
T cd04155          79 F---ENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAPAEEIAEALN--LHDLRDRTWHIQ  153 (173)
T ss_pred             h---cCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCCHHHHHHHcC--CcccCCCeEEEE
Confidence            3   34899999999975211111 1122 222   223689999999999976544333332221  111111124578


Q ss_pred             EeccCCCCChHHHHHHHHH
Q 029158          173 MVSSKSGAGIRSLRTVLSK  191 (198)
Q Consensus       173 ~~Sa~~~~gi~~l~~~i~~  191 (198)
                      ++||++|+|++++++||.+
T Consensus       154 ~~Sa~~~~gi~~~~~~l~~  172 (173)
T cd04155         154 ACSAKTGEGLQEGMNWVCK  172 (173)
T ss_pred             EeECCCCCCHHHHHHHHhc
Confidence            9999999999999999975

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=99.89  E-value=7.9e-22  Score=138.61  Aligned_cols=155  Identities=17%  Similarity=0.117  Sum_probs=97.3

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeE---EEEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHHH
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT---INFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY   97 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~---~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~   97 (198)
                      ..+|+++|++|+|||||++++.+........+..+....   ..+......+.+|||||..          .+......+
T Consensus         3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~----------~~~~~~~~~   72 (167)
T cd01867           3 LFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQE----------RFRTITTAY   72 (167)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchH----------HHHHHHHHH
Confidence            478999999999999999999987421111111111111   1122223578999999942          123333333


Q ss_pred             HhcccccceEEEEEeCCCCCCcCc-HHHHHHHHh---hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEE
Q 029158           98 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMM  173 (198)
Q Consensus        98 ~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~---~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  173 (198)
                      +.   .+|++++++|+.+..+-.. .+++..+..   .+.|+++|+||+|+.......  .+...+....   ...++++
T Consensus        73 ~~---~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~--~~~~~~~~~~---~~~~~~~  144 (167)
T cd01867          73 YR---GAMGIILVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVS--KEEGEALADE---YGIKFLE  144 (167)
T ss_pred             hC---CCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccCCC--HHHHHHHHHH---cCCEEEE
Confidence            33   4899999999976322222 234444443   258999999999998532211  1111111111   1468999


Q ss_pred             eccCCCCChHHHHHHHHHhh
Q 029158          174 VSSKSGAGIRSLRTVLSKIA  193 (198)
Q Consensus       174 ~Sa~~~~gi~~l~~~i~~~~  193 (198)
                      +||+++.|++++++++.+.+
T Consensus       145 ~Sa~~~~~v~~~~~~i~~~~  164 (167)
T cd01867         145 TSAKANINVEEAFFTLAKDI  164 (167)
T ss_pred             EeCCCCCCHHHHHHHHHHHH
Confidence            99999999999999998865

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=99.89  E-value=5.4e-22  Score=139.26  Aligned_cols=153  Identities=16%  Similarity=0.156  Sum_probs=96.4

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE-----EEEeCCceEEEeCCCCccccchhHHHHHHHHHHHH
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN-----FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE   96 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~-----~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~   96 (198)
                      .+|+++|++|+|||||++++.+... . ....+..+.+..     +......+.+|||||..          .+......
T Consensus         3 ~ki~i~G~~~vGKSsli~~~~~~~~-~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~----------~~~~~~~~   70 (166)
T cd01869           3 FKLLLIGDSGVGKSCLLLRFADDTY-T-ESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE----------RFRTITSS   70 (166)
T ss_pred             EEEEEECCCCCCHHHHHHHHhcCCC-C-CCCCCccceeEEEEEEEECCEEEEEEEEECCCcH----------hHHHHHHH
Confidence            5899999999999999999998732 1 111121221211     11123568999999952          12333334


Q ss_pred             HHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHh---hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcE
Q 029158           97 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVM  172 (198)
Q Consensus        97 ~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~---~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~  172 (198)
                      ++.   .+|++++|+|+++..+-.. ..++..+..   .+.|+++|+||+|+........  +...+....   ...+++
T Consensus        71 ~~~---~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~--~~~~~~~~~---~~~~~~  142 (166)
T cd01869          71 YYR---GAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDY--SEAQEFADE---LGIPFL  142 (166)
T ss_pred             HhC---cCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccccCCCH--HHHHHHHHH---cCCeEE
Confidence            443   4899999999976221111 223444433   2589999999999875432211  111111111   247899


Q ss_pred             EeccCCCCChHHHHHHHHHhhc
Q 029158          173 MVSSKSGAGIRSLRTVLSKIAR  194 (198)
Q Consensus       173 ~~Sa~~~~gi~~l~~~i~~~~~  194 (198)
                      ++||++|+|+++++++|.+.+.
T Consensus       143 ~~Sa~~~~~v~~~~~~i~~~~~  164 (166)
T cd01869         143 ETSAKNATNVEQAFMTMAREIK  164 (166)
T ss_pred             EEECCCCcCHHHHHHHHHHHHH
Confidence            9999999999999999988763

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=99.89  E-value=2e-22  Score=141.12  Aligned_cols=151  Identities=15%  Similarity=0.089  Sum_probs=95.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEE-----EEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHHH
Q 029158           23 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI-----NFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY   97 (198)
Q Consensus        23 ~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~-----~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~   97 (198)
                      +|+++|++|+|||||++++++...   ...+.+++.+.     .+......+.+|||||...          +..+...+
T Consensus         2 ki~v~G~~~~GKTsli~~~~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~----------~~~~~~~~   68 (164)
T smart00173        2 KLVVLGSGGVGKSALTIQFVQGHF---VDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEE----------FSAMRDQY   68 (164)
T ss_pred             EEEEECCCCCCHHHHHHHHHhCcC---CcccCCchhhhEEEEEEECCEEEEEEEEECCCccc----------chHHHHHH
Confidence            799999999999999999998732   22233333221     1111235688999999632          12333344


Q ss_pred             HhcccccceEEEEEeCCCCCCcCc-HHHHHHHHh----hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcE
Q 029158           98 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVM  172 (198)
Q Consensus        98 ~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~----~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~  172 (198)
                      +..   +|++++|+|+.+...... ..+...+..    .+.|+++|+||+|+........  +..++....   ...+++
T Consensus        69 ~~~---~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~--~~~~~~~~~---~~~~~~  140 (164)
T smart00173       69 MRT---GEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVST--EEGKELARQ---WGCPFL  140 (164)
T ss_pred             Hhh---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcH--HHHHHHHHH---cCCEEE
Confidence            443   899999999976322111 222233322    2689999999999975432111  111111111   137899


Q ss_pred             EeccCCCCChHHHHHHHHHhhc
Q 029158          173 MVSSKSGAGIRSLRTVLSKIAR  194 (198)
Q Consensus       173 ~~Sa~~~~gi~~l~~~i~~~~~  194 (198)
                      ++||+++.|+++++++|.+.+.
T Consensus       141 ~~Sa~~~~~i~~l~~~l~~~~~  162 (164)
T smart00173      141 ETSAKERVNVDEAFYDLVREIR  162 (164)
T ss_pred             EeecCCCCCHHHHHHHHHHHHh
Confidence            9999999999999999987654

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=99.89  E-value=2.5e-22  Score=139.78  Aligned_cols=152  Identities=16%  Similarity=0.123  Sum_probs=96.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHHHHhccc
Q 029158           23 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRV  102 (198)
Q Consensus        23 ~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (198)
                      +|+++|.+|+|||||++++++.. .....+..+.+. ..+...+..+.+|||||...          +......++..  
T Consensus         1 ki~iiG~~~~GKssli~~~~~~~-~~~~~~t~~~~~-~~~~~~~~~~~i~D~~G~~~----------~~~~~~~~~~~--   66 (158)
T cd00878           1 RILILGLDGAGKTTILYKLKLGE-VVTTIPTIGFNV-ETVEYKNVSFTVWDVGGQDK----------IRPLWKHYYEN--   66 (158)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCC-CCCCCCCcCcce-EEEEECCEEEEEEECCCChh----------hHHHHHHHhcc--
Confidence            58999999999999999999883 222211111111 11222357899999999632          12233334333  


Q ss_pred             ccceEEEEEeCCCCCCcCc-HHHHHHH-H---hhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEeccC
Q 029158          103 SLKRVCLLIDTKWGVKPRD-HELISLM-E---RSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSK  177 (198)
Q Consensus       103 ~~d~vi~v~d~~~~~~~~~-~~~~~~~-~---~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~  177 (198)
                       +|++++|+|+..+..... ..++..+ .   ..+.|+++|+||+|+......++....+....  ......+++++||+
T Consensus        67 -~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Sa~  143 (158)
T cd00878          67 -TNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGALSVSELIEKLGLEK--ILGRRWHIQPCSAV  143 (158)
T ss_pred             -CCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccccCHHHHHHhhChhh--ccCCcEEEEEeeCC
Confidence             799999999986311111 1222222 2   24689999999999987553333333322211  12234689999999


Q ss_pred             CCCChHHHHHHHHH
Q 029158          178 SGAGIRSLRTVLSK  191 (198)
Q Consensus       178 ~~~gi~~l~~~i~~  191 (198)
                      +|.|+++++++|..
T Consensus       144 ~~~gv~~~~~~l~~  157 (158)
T cd00878         144 TGDGLDEGLDWLLQ  157 (158)
T ss_pred             CCCCHHHHHHHHhh
Confidence            99999999999875

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=99.89  E-value=3.4e-22  Score=140.45  Aligned_cols=154  Identities=18%  Similarity=0.198  Sum_probs=98.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHHHHhccc
Q 029158           23 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRV  102 (198)
Q Consensus        23 ~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (198)
                      +|+++|.+|+|||||++++.+. ......+..+.+. ..+...+..+.+|||||...          +..+...|+.   
T Consensus         1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~~-~~~~~~~~~~~i~D~~G~~~----------~~~~~~~~~~---   65 (167)
T cd04161           1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFTP-TKLRLDKYEVCIFDLGGGAN----------FRGIWVNYYA---   65 (167)
T ss_pred             CEEEECCCCCCHHHHHHHHhCC-CCccccCcccceE-EEEEECCEEEEEEECCCcHH----------HHHHHHHHHc---
Confidence            4799999999999999999876 2222222222221 22333467899999999521          1233344444   


Q ss_pred             ccceEEEEEeCCCCCCcCc-HHHHHHHHh----hCCcEEEEEeccCCCCcHHHHHHHHHHH-HHHHhccCCCCCcEEecc
Q 029158          103 SLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPIDVARRAMQIE-ESLKANNSLVQPVMMVSS  176 (198)
Q Consensus       103 ~~d~vi~v~d~~~~~~~~~-~~~~~~~~~----~~~p~iiv~nK~Dl~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~Sa  176 (198)
                      .+|++++|+|+++...... ..++..+..    .+.|+++|+||+|+.......+..+.+. +.+.......++++++||
T Consensus        66 ~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa  145 (167)
T cd04161          66 EAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSA  145 (167)
T ss_pred             CCCEEEEEEECCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEc
Confidence            3899999999986322111 223333322    3689999999999987654443333322 111111122467899999


Q ss_pred             CCC------CChHHHHHHHHH
Q 029158          177 KSG------AGIRSLRTVLSK  191 (198)
Q Consensus       177 ~~~------~gi~~l~~~i~~  191 (198)
                      ++|      .|+++.++||.+
T Consensus       146 ~~g~~~~~~~g~~~~~~wl~~  166 (167)
T cd04161         146 IEGLGKKIDPSIVEGLRWLLA  166 (167)
T ss_pred             eeCCCCccccCHHHHHHHHhc
Confidence            998      899999999965

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>cd01868 Rab11_like Rab11-like

Probab=99.89  E-value=6.6e-22  Score=138.64  Aligned_cols=153  Identities=16%  Similarity=0.122  Sum_probs=97.0

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEE-----EEEEeCCceEEEeCCCCccccchhHHHHHHHHHHH
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI-----NFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVK   95 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~-----~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~   95 (198)
                      ..+|+++|++|+|||||++++++......  ..+.++.+.     ........+.+|||||..          .+..+..
T Consensus         3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~----------~~~~~~~   70 (165)
T cd01868           3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLD--SKSTIGVEFATRSIQIDGKTIKAQIWDTAGQE----------RYRAITS   70 (165)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCCC--CCCccceEEEEEEEEECCEEEEEEEEeCCChH----------HHHHHHH
Confidence            46899999999999999999998742111  122222221     111123568999999952          2233344


Q ss_pred             HHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHhh---CCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCc
Q 029158           96 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS---QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPV  171 (198)
Q Consensus        96 ~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~~---~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v  171 (198)
                      .++.   .++++++|+|+++...... .+++..+...   +.|+++|+||+|+.......  .+..+.....   ...++
T Consensus        71 ~~~~---~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~--~~~~~~~~~~---~~~~~  142 (165)
T cd01868          71 AYYR---GAVGALLVYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVP--TEEAKAFAEK---NGLSF  142 (165)
T ss_pred             HHHC---CCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccccCC--HHHHHHHHHH---cCCEE
Confidence            4443   3899999999975322222 2344444332   58999999999997543211  1122222221   14789


Q ss_pred             EEeccCCCCChHHHHHHHHHhh
Q 029158          172 MMVSSKSGAGIRSLRTVLSKIA  193 (198)
Q Consensus       172 ~~~Sa~~~~gi~~l~~~i~~~~  193 (198)
                      +++||++|.|+++++++|.+.+
T Consensus       143 ~~~Sa~~~~~v~~l~~~l~~~i  164 (165)
T cd01868         143 IETSALDGTNVEEAFKQLLTEI  164 (165)
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            9999999999999999998654

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=99.89  E-value=7.8e-22  Score=139.27  Aligned_cols=152  Identities=14%  Similarity=0.088  Sum_probs=97.6

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeE-----EEEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHH
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT-----INFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE   96 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~-----~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~   96 (198)
                      .+|+++|.+|+|||||++++.....   ...+.++...     ..+......+.+|||||..          .+..+...
T Consensus         3 ~ki~vvG~~~vGKTsL~~~~~~~~f---~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~----------~~~~l~~~   69 (172)
T cd04141           3 YKIVMLGAGGVGKSAVTMQFISHSF---PDYHDPTIEDAYKQQARIDNEPALLDILDTAGQA----------EFTAMRDQ   69 (172)
T ss_pred             eEEEEECCCCCcHHHHHHHHHhCCC---CCCcCCcccceEEEEEEECCEEEEEEEEeCCCch----------hhHHHhHH
Confidence            5899999999999999999998732   1222222211     1121223568999999952          22344445


Q ss_pred             HHhcccccceEEEEEeCCCCCCcCcH-HHHHHHHh----hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCc
Q 029158           97 YVSTRVSLKRVCLLIDTKWGVKPRDH-ELISLMER----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPV  171 (198)
Q Consensus        97 ~~~~~~~~d~vi~v~d~~~~~~~~~~-~~~~~~~~----~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v  171 (198)
                      ++..   +|++++|+|.++..+-... +++..+..    .++|+++|+||+|+........  +..++...   ..++++
T Consensus        70 ~~~~---~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~--~~~~~~a~---~~~~~~  141 (172)
T cd04141          70 YMRC---GEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTT--EEGRNLAR---EFNCPF  141 (172)
T ss_pred             Hhhc---CCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCH--HHHHHHHH---HhCCEE
Confidence            5443   8999999999874333322 23333332    3689999999999865432211  11111111   124789


Q ss_pred             EEeccCCCCChHHHHHHHHHhhc
Q 029158          172 MMVSSKSGAGIRSLRTVLSKIAR  194 (198)
Q Consensus       172 ~~~Sa~~~~gi~~l~~~i~~~~~  194 (198)
                      +++||++|.|++++++++...+.
T Consensus       142 ~e~Sa~~~~~v~~~f~~l~~~~~  164 (172)
T cd04141         142 FETSAALRHYIDDAFHGLVREIR  164 (172)
T ss_pred             EEEecCCCCCHHHHHHHHHHHHH
Confidence            99999999999999999987653

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=99.89  E-value=1.3e-21  Score=137.81  Aligned_cols=153  Identities=14%  Similarity=0.160  Sum_probs=96.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCccceeecCCCCcee-EEE-----EEEeCCceEEEeCCCCccccchhHHHHHHHHHHHH
Q 029158           23 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQ-TIN-----FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE   96 (198)
Q Consensus        23 ~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~-~~~-----~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~   96 (198)
                      +|+++|.+|+|||||+++++++.   ....+.++.. +..     ......++.+|||||.          +.+..+...
T Consensus         2 ki~ivG~~~vGKTsli~~~~~~~---f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~----------~~~~~~~~~   68 (170)
T cd04108           2 KVIVVGDLSVGKTCLINRFCKDV---FDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQ----------ERFKCIAST   68 (170)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC---CCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCh----------HHHHhhHHH
Confidence            68999999999999999999873   2223332221 211     1112357999999995          222333444


Q ss_pred             HHhcccccceEEEEEeCCCCCCc-CcHHHHHHHHhh----CCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCc
Q 029158           97 YVSTRVSLKRVCLLIDTKWGVKP-RDHELISLMERS----QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPV  171 (198)
Q Consensus        97 ~~~~~~~~d~vi~v~d~~~~~~~-~~~~~~~~~~~~----~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v  171 (198)
                      ++..   +|++++|+|+++..+. ....++..+...    ..|+++|+||+|+..........+..+.....   ...++
T Consensus        69 ~~~~---ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~---~~~~~  142 (170)
T cd04108          69 YYRG---AQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAE---MQAEY  142 (170)
T ss_pred             HhcC---CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHH---cCCeE
Confidence            4443   8999999999762111 123445444332    35689999999996543321111122222111   13678


Q ss_pred             EEeccCCCCChHHHHHHHHHhhc
Q 029158          172 MMVSSKSGAGIRSLRTVLSKIAR  194 (198)
Q Consensus       172 ~~~Sa~~~~gi~~l~~~i~~~~~  194 (198)
                      +++||++|.|++++++.|...+.
T Consensus       143 ~e~Sa~~g~~v~~lf~~l~~~~~  165 (170)
T cd04108         143 WSVSALSGENVREFFFRVAALTF  165 (170)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHH
Confidence            99999999999999999987653

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=99.89  E-value=9.2e-22  Score=142.29  Aligned_cols=153  Identities=14%  Similarity=0.139  Sum_probs=96.4

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCcee-EE--EEEE----eCCceEEEeCCCCccccchhHHHHHHHHHH
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQ-TI--NFFK----LGTKLCLVDLPGYGFAYAKEEVKDAWEELV   94 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~-~~--~~~~----~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~   94 (198)
                      .+|+++|.+|+|||||++++++..   ....+.+|.. +.  ....    ....+.+|||||..          .+..+.
T Consensus         1 ~KivivG~~~vGKTsli~~l~~~~---~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~----------~~~~~~   67 (201)
T cd04107           1 LKVLVIGDLGVGKTSIIKRYVHGI---FSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQE----------RFGGMT   67 (201)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCC---CCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCch----------hhhhhH
Confidence            379999999999999999999873   1222222221 11  1111    13468999999952          223444


Q ss_pred             HHHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHh-------hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccC
Q 029158           95 KEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER-------SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNS  166 (198)
Q Consensus        95 ~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~-------~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~  166 (198)
                      ..++..   +|++++|+|.++..+-.. ..++..+..       .+.|+++|+||+|+......  ..+.+++...... 
T Consensus        68 ~~~~~~---a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~--~~~~~~~~~~~~~-  141 (201)
T cd04107          68 RVYYRG---AVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAK--DGEQMDQFCKENG-  141 (201)
T ss_pred             HHHhCC---CCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCccccccc--CHHHHHHHHHHcC-
Confidence            455544   899999999976322221 223333321       35899999999999742211  1122222222211 


Q ss_pred             CCCCcEEeccCCCCChHHHHHHHHHhhc
Q 029158          167 LVQPVMMVSSKSGAGIRSLRTVLSKIAR  194 (198)
Q Consensus       167 ~~~~v~~~Sa~~~~gi~~l~~~i~~~~~  194 (198)
                       ..+++++||++|+|+++++++|.+.+.
T Consensus       142 -~~~~~e~Sak~~~~v~e~f~~l~~~l~  168 (201)
T cd04107         142 -FIGWFETSAKEGINIEEAMRFLVKNIL  168 (201)
T ss_pred             -CceEEEEeCCCCCCHHHHHHHHHHHHH
Confidence             257999999999999999999988653

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>PRK11058 GTPase HflX; Provisional

Probab=99.89  E-value=1.1e-21  Score=155.40  Aligned_cols=158  Identities=19%  Similarity=0.275  Sum_probs=105.1

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEe---C-CceEEEeCCCCccccchhHHHHHHHHHHH
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---G-TKLCLVDLPGYGFAYAKEEVKDAWEELVK   95 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~-~~~~iiDtpG~~~~~~~~~~~~~~~~~~~   95 (198)
                      ..|+|+++|.+|+|||||+|+|++.+ . ...+.+++|.+......   + ..+.++||||+.... .+...+.+..   
T Consensus       196 ~~p~ValVG~~NaGKSSLlN~Lt~~~-~-~v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~l-p~~lve~f~~---  269 (426)
T PRK11058        196 DVPTVSLVGYTNAGKSTLFNRITEAR-V-YAADQLFATLDPTLRRIDVADVGETVLADTVGFIRHL-PHDLVAAFKA---  269 (426)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCc-e-eeccCCCCCcCCceEEEEeCCCCeEEEEecCcccccC-CHHHHHHHHH---
Confidence            45899999999999999999999874 3 35677777766543221   2 378999999973211 1222222222   


Q ss_pred             HHHhcccccceEEEEEeCCCCCCcCcH----HHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCC-
Q 029158           96 EYVSTRVSLKRVCLLIDTKWGVKPRDH----ELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQP-  170 (198)
Q Consensus        96 ~~~~~~~~~d~vi~v~d~~~~~~~~~~----~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~-  170 (198)
                       .+.....+|++++|+|++++......    .++..+...+.|+++|+||+|+...... .    +... .    ...+ 
T Consensus       270 -tl~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~~-~----~~~~-~----~~~~~  338 (426)
T PRK11058        270 -TLQETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFEP-R----IDRD-E----ENKPI  338 (426)
T ss_pred             -HHHHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCchhH-H----HHHH-h----cCCCc
Confidence             23344569999999999875333332    2334443346999999999999753211 1    1111 0    1234 


Q ss_pred             cEEeccCCCCChHHHHHHHHHhhc
Q 029158          171 VMMVSSKSGAGIRSLRTVLSKIAR  194 (198)
Q Consensus       171 v~~~Sa~~~~gi~~l~~~i~~~~~  194 (198)
                      ++++||++|+|+++++++|.+.+.
T Consensus       339 ~v~ISAktG~GIdeL~e~I~~~l~  362 (426)
T PRK11058        339 RVWLSAQTGAGIPLLFQALTERLS  362 (426)
T ss_pred             eEEEeCCCCCCHHHHHHHHHHHhh
Confidence            588999999999999999998764

>cd04127 Rab27A Rab27a subfamily

Probab=99.89  E-value=1.2e-21  Score=139.30  Aligned_cols=152  Identities=16%  Similarity=0.134  Sum_probs=96.2

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCce-eE-----EEEE----------EeCCceEEEeCCCCccccchh
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT-QT-----INFF----------KLGTKLCLVDLPGYGFAYAKE   84 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t-~~-----~~~~----------~~~~~~~iiDtpG~~~~~~~~   84 (198)
                      ..+|+++|++|+|||||++++.+...   ...+.++. .+     ..+.          .....+.+|||||.       
T Consensus         4 ~~ki~ivG~~~vGKTsli~~~~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~-------   73 (180)
T cd04127           4 LIKFLALGDSGVGKTSFLYQYTDNKF---NPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQ-------   73 (180)
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCC---CccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCCh-------
Confidence            46899999999999999999998732   12221111 11     1111          11256899999994       


Q ss_pred             HHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHh----hCCcEEEEEeccCCCCcHHHHHHHHHHHH
Q 029158           85 EVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPIDVARRAMQIEE  159 (198)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~----~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~  159 (198)
                         +.+..+...++.   .+|++++|+|+++..+-.. ..++..+..    .+.|+++|+||+|+........  +..++
T Consensus        74 ---~~~~~~~~~~~~---~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~--~~~~~  145 (180)
T cd04127          74 ---ERFRSLTTAFFR---DAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSE--EQAKA  145 (180)
T ss_pred             ---HHHHHHHHHHhC---CCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCH--HHHHH
Confidence               222334444444   4899999999976322122 234444443    2578999999999975422111  11222


Q ss_pred             HHHhccCCCCCcEEeccCCCCChHHHHHHHHHhh
Q 029158          160 SLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA  193 (198)
Q Consensus       160 ~~~~~~~~~~~v~~~Sa~~~~gi~~l~~~i~~~~  193 (198)
                      .....   ..+++++||++|.|+++++++|.+.+
T Consensus       146 ~~~~~---~~~~~e~Sak~~~~v~~l~~~l~~~~  176 (180)
T cd04127         146 LADKY---GIPYFETSAATGTNVEKAVERLLDLV  176 (180)
T ss_pred             HHHHc---CCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence            22111   36899999999999999999998754

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>cd01865 Rab3 Rab3 subfamily

Probab=99.89  E-value=1.2e-21  Score=137.36  Aligned_cols=151  Identities=19%  Similarity=0.167  Sum_probs=95.7

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCce-eEE---EEEE--eCCceEEEeCCCCccccchhHHHHHHHHHHH
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT-QTI---NFFK--LGTKLCLVDLPGYGFAYAKEEVKDAWEELVK   95 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t-~~~---~~~~--~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~   95 (198)
                      .+|+++|.+|+|||||++++.+...   ...+.++. .+.   ....  ....+.+|||||..          .+..+..
T Consensus         2 ~ki~i~G~~~~GKSsli~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~----------~~~~~~~   68 (165)
T cd01865           2 FKLLIIGNSSVGKTSFLFRYADDSF---TSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQE----------RYRTITT   68 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCC---CCCCCCceeeEEEEEEEEECCEEEEEEEEECCChH----------HHHHHHH
Confidence            5899999999999999999998742   12222221 111   1111  13568999999952          1122233


Q ss_pred             HHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHh---hCCcEEEEEeccCCCCcHHHH-HHHHHHHHHHHhccCCCCC
Q 029158           96 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDVA-RRAMQIEESLKANNSLVQP  170 (198)
Q Consensus        96 ~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~---~~~p~iiv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~  170 (198)
                      .++   ..+|++++|+|.++...-.. .+++..+..   ...|+++|+||+|+....... +....+.+.      .+.+
T Consensus        69 ~~~---~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~------~~~~  139 (165)
T cd01865          69 AYY---RGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVSSERGRQLADQ------LGFE  139 (165)
T ss_pred             HHc---cCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCcccccCHHHHHHHHHH------cCCE
Confidence            333   34899999999976321111 234444443   257899999999997543211 111122211      1368


Q ss_pred             cEEeccCCCCChHHHHHHHHHhhc
Q 029158          171 VMMVSSKSGAGIRSLRTVLSKIAR  194 (198)
Q Consensus       171 v~~~Sa~~~~gi~~l~~~i~~~~~  194 (198)
                      ++++||++|.|++++++++.+.+.
T Consensus       140 ~~~~Sa~~~~gv~~l~~~l~~~~~  163 (165)
T cd01865         140 FFEASAKENINVKQVFERLVDIIC  163 (165)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            999999999999999999987653

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=99.89  E-value=1e-21  Score=156.30  Aligned_cols=155  Identities=26%  Similarity=0.245  Sum_probs=106.3

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEE---EEeCCceEEEeCCCCccccchhHHHHHHHHHHHH
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF---FKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE   96 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~---~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~   96 (198)
                      ...+|+++|++|+|||||+|+|++. ....+.+++++|++...   ...+..+.+|||||+.+..  +... .  .....
T Consensus       202 ~g~kVvIvG~~nvGKSSLiN~L~~~-~~aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~--~~ie-~--~gi~~  275 (442)
T TIGR00450       202 DGFKLAIVGSPNVGKSSLLNALLKQ-DRAIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIREHA--DFVE-R--LGIEK  275 (442)
T ss_pred             cCCEEEEECCCCCcHHHHHHHHhCC-CCcccCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccch--hHHH-H--HHHHH
Confidence            4578999999999999999999987 45667888999987542   2236789999999985431  1111 0  01112


Q ss_pred             HHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEecc
Q 029158           97 YVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSS  176 (198)
Q Consensus        97 ~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa  176 (198)
                      .......+|++++|+|++++....+. ++..+...+.|+++|+||+|+... +.    ..+.+      ....+++.+||
T Consensus       276 ~~~~~~~aD~il~V~D~s~~~s~~~~-~l~~~~~~~~piIlV~NK~Dl~~~-~~----~~~~~------~~~~~~~~vSa  343 (442)
T TIGR00450       276 SFKAIKQADLVIYVLDASQPLTKDDF-LIIDLNKSKKPFILVLNKIDLKIN-SL----EFFVS------SKVLNSSNLSA  343 (442)
T ss_pred             HHHHHhhCCEEEEEEECCCCCChhHH-HHHHHhhCCCCEEEEEECccCCCc-ch----hhhhh------hcCCceEEEEE
Confidence            22333459999999999876544443 555555557999999999999754 11    11111      11367899999


Q ss_pred             CCCCChHHHHHHHHHhh
Q 029158          177 KSGAGIRSLRTVLSKIA  193 (198)
Q Consensus       177 ~~~~gi~~l~~~i~~~~  193 (198)
                      ++ .|++++++.+.+.+
T Consensus       344 k~-~gI~~~~~~L~~~i  359 (442)
T TIGR00450       344 KQ-LKIKALVDLLTQKI  359 (442)
T ss_pred             ec-CCHHHHHHHHHHHH
Confidence            98 57777777766644

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>cd04122 Rab14 Rab14 subfamily

Probab=99.89  E-value=7.2e-22  Score=138.65  Aligned_cols=151  Identities=16%  Similarity=0.132  Sum_probs=96.2

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCcee-EE-----EEEEeCCceEEEeCCCCccccchhHHHHHHHHHHH
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQ-TI-----NFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVK   95 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~-~~-----~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~   95 (198)
                      .+|+++|++|+|||||++++.+...   ...++++.. +.     .+......+.+|||||.          +.+.....
T Consensus         3 ~ki~iiG~~~vGKTsli~~~~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~----------~~~~~~~~   69 (166)
T cd04122           3 FKYIIIGDMGVGKSCLLHQFTEKKF---MADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQ----------ERFRAVTR   69 (166)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCC---CCCCCcccceeEEEEEEEECCEEEEEEEEECCCc----------HHHHHHHH
Confidence            5899999999999999999998732   222332221 11     11112357899999994          12233334


Q ss_pred             HHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHh---hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCc
Q 029158           96 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPV  171 (198)
Q Consensus        96 ~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~---~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v  171 (198)
                      .++.   .+|++++|+|.++..+... ..++..+..   .+.|+++|+||+|+.......  .+..++....   ...++
T Consensus        70 ~~~~---~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~--~~~~~~~~~~---~~~~~  141 (166)
T cd04122          70 SYYR---GAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRDVT--YEEAKQFADE---NGLLF  141 (166)
T ss_pred             HHhc---CCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCcC--HHHHHHHHHH---cCCEE
Confidence            4444   3899999999986322111 233333332   257899999999997643221  1112222221   14689


Q ss_pred             EEeccCCCCChHHHHHHHHHhh
Q 029158          172 MMVSSKSGAGIRSLRTVLSKIA  193 (198)
Q Consensus       172 ~~~Sa~~~~gi~~l~~~i~~~~  193 (198)
                      +++||++|+|+++++.++...+
T Consensus       142 ~e~Sa~~~~~i~e~f~~l~~~~  163 (166)
T cd04122         142 LECSAKTGENVEDAFLETAKKI  163 (166)
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            9999999999999999887654

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>cd04142 RRP22 RRP22 subfamily

Probab=99.89  E-value=8.4e-22  Score=141.91  Aligned_cols=159  Identities=14%  Similarity=0.024  Sum_probs=95.7

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCcee-EE---E--EEEeCCceEEEeCCCCccccchhHHHHHHHHHHH
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQ-TI---N--FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVK   95 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~-~~---~--~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~   95 (198)
                      .+|+++|.+|+|||||++++.+...   ...+.+++. +.   .  +......+.+|||||.....  ......+..   
T Consensus         1 ~kI~ivG~~~vGKTsLi~~~~~~~f---~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~--~~~~~e~~~---   72 (198)
T cd04142           1 VRVAVLGAPGVGKTAIVRQFLAQEF---PEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYP--GTAGQEWMD---   72 (198)
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCCC---CcccCCccccccceeEEEECCEEEEEEEEeCCCcccCC--ccchhHHHH---
Confidence            3799999999999999999998732   222333332 21   1  11112568899999974311  011111111   


Q ss_pred             HHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHh------hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCC
Q 029158           96 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER------SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLV  168 (198)
Q Consensus        96 ~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~------~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  168 (198)
                      ........+|++++|+|+++..+... ..+++.+..      .+.|+++|+||+|+.......  .+..++.....  ..
T Consensus        73 ~~~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~--~~~~~~~~~~~--~~  148 (198)
T cd04142          73 PRFRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAP--RHVLSVLVRKS--WK  148 (198)
T ss_pred             HHHhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECcccccccccc--HHHHHHHHHHh--cC
Confidence            11222345999999999986322222 223333322      358999999999996532111  11122211111  25


Q ss_pred             CCcEEeccCCCCChHHHHHHHHHh
Q 029158          169 QPVMMVSSKSGAGIRSLRTVLSKI  192 (198)
Q Consensus       169 ~~v~~~Sa~~~~gi~~l~~~i~~~  192 (198)
                      ++++++||++|.|++++++.+.+.
T Consensus       149 ~~~~e~Sak~g~~v~~lf~~i~~~  172 (198)
T cd04142         149 CGYLECSAKYNWHILLLFKELLIS  172 (198)
T ss_pred             CcEEEecCCCCCCHHHHHHHHHHH
Confidence            789999999999999999988754

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.

>cd00879 Sar1 Sar1 subfamily

Probab=99.89  E-value=3.5e-22  Score=143.22  Aligned_cols=158  Identities=17%  Similarity=0.142  Sum_probs=96.1

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHHHHh
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS   99 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~   99 (198)
                      ...+|+++|++|+|||||++++.+.. .....+..+.+. ..+...+..+.++||||...          .......++.
T Consensus        18 ~~~ki~ilG~~~~GKStLi~~l~~~~-~~~~~~T~~~~~-~~i~~~~~~~~l~D~~G~~~----------~~~~~~~~~~   85 (190)
T cd00879          18 KEAKILFLGLDNAGKTTLLHMLKDDR-LAQHVPTLHPTS-EELTIGNIKFKTFDLGGHEQ----------ARRLWKDYFP   85 (190)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC-CcccCCccCcce-EEEEECCEEEEEEECCCCHH----------HHHHHHHHhc
Confidence            46889999999999999999999863 221111111111 12222356789999999521          1222223333


Q ss_pred             cccccceEEEEEeCCCCCCc-CcHHHHHH-HH---hhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHH---------hcc
Q 029158          100 TRVSLKRVCLLIDTKWGVKP-RDHELISL-ME---RSQTKYQVVLTKTDTVFPIDVARRAMQIEESLK---------ANN  165 (198)
Q Consensus       100 ~~~~~d~vi~v~d~~~~~~~-~~~~~~~~-~~---~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~---------~~~  165 (198)
                         .+|++++|+|+++.-.- .....+.. ++   ..+.|+++++||+|+......++..+.+.....         ...
T Consensus        86 ---~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (190)
T cd00879          86 ---EVDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGAVSEEELRQALGLYGTTTGKGVSLKVSG  162 (190)
T ss_pred             ---cCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCCcCHHHHHHHhCcccccccccccccccC
Confidence               48999999999753111 11222222 22   235899999999999754333332222221000         001


Q ss_pred             CCCCCcEEeccCCCCChHHHHHHHHHh
Q 029158          166 SLVQPVMMVSSKSGAGIRSLRTVLSKI  192 (198)
Q Consensus       166 ~~~~~v~~~Sa~~~~gi~~l~~~i~~~  192 (198)
                      ....+++++||++|+|++++++||.+.
T Consensus       163 ~~~~~~~~~Sa~~~~gv~e~~~~l~~~  189 (190)
T cd00879         163 IRPIEVFMCSVVKRQGYGEAFRWLSQY  189 (190)
T ss_pred             ceeEEEEEeEecCCCChHHHHHHHHhh
Confidence            123568999999999999999999765

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>cd01861 Rab6 Rab6 subfamily

Probab=99.89  E-value=1e-21  Score=137.00  Aligned_cols=150  Identities=17%  Similarity=0.210  Sum_probs=94.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE---EEE--eCCceEEEeCCCCccccchhHHHHHHHHHHHHH
Q 029158           23 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFK--LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY   97 (198)
Q Consensus        23 ~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~---~~~--~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~   97 (198)
                      +|+++|++|+|||||++++++.. .. ....+.++.+..   +..  ....+.+|||||..          .+..+...+
T Consensus         2 ki~liG~~~~GKSsli~~l~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~----------~~~~~~~~~   69 (161)
T cd01861           2 KLVFLGDQSVGKTSIITRFMYDT-FD-NQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQE----------RFRSLIPSY   69 (161)
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC-CC-ccCCCceeeeEEEEEEEECCEEEEEEEEECCCcH----------HHHHHHHHH
Confidence            79999999999999999999874 21 222333333322   111  12468999999942          123334444


Q ss_pred             HhcccccceEEEEEeCCCCCCcCc-HHHHHHHH-hh--CCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEE
Q 029158           98 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLME-RS--QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMM  173 (198)
Q Consensus        98 ~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~-~~--~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  173 (198)
                      +.   .+|++++|+|.++..+... ..++..+. ..  +.|+++|+||+|+.......  .+........   .+.++++
T Consensus        70 ~~---~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~--~~~~~~~~~~---~~~~~~~  141 (161)
T cd01861          70 IR---DSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVS--TEEGEKKAKE---LNAMFIE  141 (161)
T ss_pred             hc---cCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccC--HHHHHHHHHH---hCCEEEE
Confidence            43   3899999999976322111 23343332 22  48999999999995432111  1111111111   1378999


Q ss_pred             eccCCCCChHHHHHHHHHh
Q 029158          174 VSSKSGAGIRSLRTVLSKI  192 (198)
Q Consensus       174 ~Sa~~~~gi~~l~~~i~~~  192 (198)
                      +||++++|+++++++|.+.
T Consensus       142 ~Sa~~~~~v~~l~~~i~~~  160 (161)
T cd01861         142 TSAKAGHNVKELFRKIASA  160 (161)
T ss_pred             EeCCCCCCHHHHHHHHHHh
Confidence            9999999999999999875

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>PTZ00369 Ras-like protein; Provisional

Probab=99.89  E-value=7.4e-22  Score=141.45  Aligned_cols=154  Identities=14%  Similarity=0.083  Sum_probs=97.3

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeE---E--EEEEeCCceEEEeCCCCccccchhHHHHHHHHHH
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT---I--NFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELV   94 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~---~--~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~   94 (198)
                      ...+|+++|.+|+|||||++++++...   ...+.++...   .  .+......+.+|||||..+          +..+.
T Consensus         4 ~~~Ki~iiG~~~~GKTsLi~~~~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~----------~~~l~   70 (189)
T PTZ00369          4 TEYKLVVVGGGGVGKSALTIQFIQNHF---IDEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEE----------YSAMR   70 (189)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhcCCC---CcCcCCchhhEEEEEEEECCEEEEEEEEeCCCCcc----------chhhH
Confidence            457999999999999999999998732   1222222211   1  1112234688999999633          13333


Q ss_pred             HHHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHh----hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCC
Q 029158           95 KEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQ  169 (198)
Q Consensus        95 ~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~----~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  169 (198)
                      ..++..   +|++++|+|+++..+... ..++..+..    .+.|+++|+||+|+........  ....+....   ...
T Consensus        71 ~~~~~~---~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~--~~~~~~~~~---~~~  142 (189)
T PTZ00369         71 DQYMRT---GQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVST--GEGQELAKS---FGI  142 (189)
T ss_pred             HHHhhc---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCH--HHHHHHHHH---hCC
Confidence            444443   899999999986322111 233333332    2689999999999865322111  111111111   136


Q ss_pred             CcEEeccCCCCChHHHHHHHHHhhc
Q 029158          170 PVMMVSSKSGAGIRSLRTVLSKIAR  194 (198)
Q Consensus       170 ~v~~~Sa~~~~gi~~l~~~i~~~~~  194 (198)
                      +++++||++|.|+++++++|.+.+.
T Consensus       143 ~~~e~Sak~~~gi~~~~~~l~~~l~  167 (189)
T PTZ00369        143 PFLETSAKQRVNVDEAFYELVREIR  167 (189)
T ss_pred             EEEEeeCCCCCCHHHHHHHHHHHHH
Confidence            8999999999999999999987653

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=99.88  E-value=5.9e-22  Score=139.14  Aligned_cols=149  Identities=13%  Similarity=0.041  Sum_probs=95.4

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE-----EEE--eCCceEEEeCCCCccccchhHHHHHHHHHH
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN-----FFK--LGTKLCLVDLPGYGFAYAKEEVKDAWEELV   94 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~-----~~~--~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~   94 (198)
                      .+|+++|++|+|||||+++++....   ...+. +|....     +..  ....+.+|||||...          +..+.
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~---~~~~~-~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~----------~~~~~   66 (166)
T cd00877           1 FKLVLVGDGGTGKTTFVKRHLTGEF---EKKYV-ATLGVEVHPLDFHTNRGKIRFNVWDTAGQEK----------FGGLR   66 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCC---CCCCC-CceeeEEEEEEEEECCEEEEEEEEECCCChh----------hcccc
Confidence            3799999999999999999987631   11222 222211     111  235789999999632          12222


Q ss_pred             HHHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHhh--CCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCc
Q 029158           95 KEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS--QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPV  171 (198)
Q Consensus        95 ~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~~--~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v  171 (198)
                      ..++.   .+|++++|+|.++..+... ..++..+...  +.|+++|+||+|+.......+.    .+...   ....++
T Consensus        67 ~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piiiv~nK~Dl~~~~~~~~~----~~~~~---~~~~~~  136 (166)
T cd00877          67 DGYYI---GGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCGNIPIVLCGNKVDIKDRKVKAKQ----ITFHR---KKNLQY  136 (166)
T ss_pred             HHHhc---CCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhcccccCCHHH----HHHHH---HcCCEE
Confidence            23333   3899999999986433222 2344444433  6999999999999733211111    11111   125789


Q ss_pred             EEeccCCCCChHHHHHHHHHhhc
Q 029158          172 MMVSSKSGAGIRSLRTVLSKIAR  194 (198)
Q Consensus       172 ~~~Sa~~~~gi~~l~~~i~~~~~  194 (198)
                      +++||++|+|+++++++|.+.+.
T Consensus       137 ~e~Sa~~~~~v~~~f~~l~~~~~  159 (166)
T cd00877         137 YEISAKSNYNFEKPFLWLARKLL  159 (166)
T ss_pred             EEEeCCCCCChHHHHHHHHHHHH
Confidence            99999999999999999987653

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=99.88  E-value=1.3e-21  Score=137.02  Aligned_cols=152  Identities=15%  Similarity=0.134  Sum_probs=97.2

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCce-eEEE--EE----EeCCceEEEeCCCCccccchhHHHHHHHHHH
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT-QTIN--FF----KLGTKLCLVDLPGYGFAYAKEEVKDAWEELV   94 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t-~~~~--~~----~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~   94 (198)
                      .+|+++|.+|+|||||++++.... ......+.+++ .+..  ..    .....+.+|||||.          +.+..+.
T Consensus         1 ~ki~vvG~~~~GKtsl~~~l~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~----------~~~~~~~   69 (164)
T cd04101           1 LRCAVVGDPAVGKTAFVQMFHSNG-AVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQ----------ELYSDMV   69 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCC-CCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCH----------HHHHHHH
Confidence            379999999999999999998641 12223333333 1211  11    12357899999994          2233444


Q ss_pred             HHHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHhh--CCcEEEEEeccCCCCcHHHHHHH-HHHHHHHHhccCCCCC
Q 029158           95 KEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS--QTKYQVVLTKTDTVFPIDVARRA-MQIEESLKANNSLVQP  170 (198)
Q Consensus        95 ~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~~--~~p~iiv~nK~Dl~~~~~~~~~~-~~~~~~~~~~~~~~~~  170 (198)
                      ..++.   .+|++++|+|.++..+... ..++..+...  +.|+++|+||+|+....+..... ..+..      ..+.+
T Consensus        70 ~~~~~---~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~------~~~~~  140 (164)
T cd04101          70 SNYWE---SPSVFILVYDVSNKASFENCSRWVNKVRTASKHMPGVLVGNKMDLADKAEVTDAQAQAFAQ------ANQLK  140 (164)
T ss_pred             HHHhC---CCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccCCCHHHHHHHHH------HcCCe
Confidence            44443   4899999999976322111 3445555443  58999999999997543222111 11111      11367


Q ss_pred             cEEeccCCCCChHHHHHHHHHhh
Q 029158          171 VMMVSSKSGAGIRSLRTVLSKIA  193 (198)
Q Consensus       171 v~~~Sa~~~~gi~~l~~~i~~~~  193 (198)
                      ++++||+++.|++++++.+.+.+
T Consensus       141 ~~~~Sa~~~~gi~~l~~~l~~~~  163 (164)
T cd04101         141 FFKTSALRGVGYEEPFESLARAF  163 (164)
T ss_pred             EEEEeCCCCCChHHHHHHHHHHh
Confidence            99999999999999999998754

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>cd04106 Rab23_lke Rab23-like subfamily

Probab=99.88  E-value=1.6e-21  Score=136.24  Aligned_cols=149  Identities=21%  Similarity=0.216  Sum_probs=94.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCccceeecCCCCce-eEE-----EEE--EeCCceEEEeCCCCccccchhHHHHHHHHHH
Q 029158           23 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT-QTI-----NFF--KLGTKLCLVDLPGYGFAYAKEEVKDAWEELV   94 (198)
Q Consensus        23 ~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t-~~~-----~~~--~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~   94 (198)
                      +|+++|.+|+|||||++++++...   ...+.++. .+.     .+.  .....+.+|||||.          +.+....
T Consensus         2 kv~~vG~~~~GKTsl~~~~~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~----------~~~~~~~   68 (162)
T cd04106           2 KVIVVGNGNVGKSSMIQRFVKGIF---TKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQ----------EEFDAIT   68 (162)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCC---CCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCch----------HHHHHhH
Confidence            799999999999999999998732   22222221 121     111  12356899999994          2223444


Q ss_pred             HHHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHh--hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCc
Q 029158           95 KEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER--SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPV  171 (198)
Q Consensus        95 ~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v  171 (198)
                      ..++.   .+|++++|+|+.+...... ..++..+..  .+.|+++|+||+|+........  +..++....   .+.++
T Consensus        69 ~~~~~---~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~v~~--~~~~~~~~~---~~~~~  140 (162)
T cd04106          69 KAYYR---GAQACILVFSTTDRESFEAIESWKEKVEAECGDIPMVLVQTKIDLLDQAVITN--EEAEALAKR---LQLPL  140 (162)
T ss_pred             HHHhc---CCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhcccccCCCH--HHHHHHHHH---cCCeE
Confidence            44444   4899999999876322111 223333332  2689999999999976432211  111221211   14689


Q ss_pred             EEeccCCCCChHHHHHHHHHh
Q 029158          172 MMVSSKSGAGIRSLRTVLSKI  192 (198)
Q Consensus       172 ~~~Sa~~~~gi~~l~~~i~~~  192 (198)
                      +++||+++.|+++++++|...
T Consensus       141 ~~~Sa~~~~~v~~l~~~l~~~  161 (162)
T cd04106         141 FRTSVKDDFNVTELFEYLAEK  161 (162)
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            999999999999999999764

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2

Probab=99.88  E-value=2.3e-21  Score=158.42  Aligned_cols=158  Identities=23%  Similarity=0.340  Sum_probs=104.3

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCC-CCceeEEE--EEEe-------------------CCceEEEeCCCC
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDK-PGLTQTIN--FFKL-------------------GTKLCLVDLPGY   77 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~-~~~t~~~~--~~~~-------------------~~~~~iiDtpG~   77 (198)
                      +.|.|+++|.+++|||||+++|.+.. +.  ... .++|+...  +...                   ...+.+|||||+
T Consensus         3 r~piV~IiG~~d~GKTSLln~l~~~~-v~--~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~   79 (590)
T TIGR00491         3 RSPIVSVLGHVDHGKTTLLDKIRGSA-VA--KREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGH   79 (590)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccc-cc--cccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCc
Confidence            57889999999999999999999873 22  122 22333211  1000                   024899999996


Q ss_pred             ccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHH--------
Q 029158           78 GFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPID--------  149 (198)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~--------  149 (198)
                      .          .+..+...+   ...+|++++|+|++++....+.+.+..+...++|+++++||+|+.....        
T Consensus        80 e----------~f~~l~~~~---~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~~~vpiIVv~NK~Dl~~~~~~~~~~~f~  146 (590)
T TIGR00491        80 E----------AFTNLRKRG---GALADLAILIVDINEGFKPQTQEALNILRMYKTPFVVAANKIDRIPGWRSHEGRPFM  146 (590)
T ss_pred             H----------hHHHHHHHH---HhhCCEEEEEEECCcCCCHhHHHHHHHHHHcCCCEEEEEECCCccchhhhccCchHH
Confidence            2          122222222   2359999999999988777777778877777899999999999974210        


Q ss_pred             ------HHHH-------HHHHHHHHHh------------ccCCCCCcEEeccCCCCChHHHHHHHHHhh
Q 029158          150 ------VARR-------AMQIEESLKA------------NNSLVQPVMMVSSKSGAGIRSLRTVLSKIA  193 (198)
Q Consensus       150 ------~~~~-------~~~~~~~~~~------------~~~~~~~v~~~Sa~~~~gi~~l~~~i~~~~  193 (198)
                            ....       ...+...+..            ......+++++||++|+|+++|.++|...+
T Consensus       147 e~sak~~~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~  215 (590)
T TIGR00491       147 ESFSKQEIQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLA  215 (590)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHH
Confidence                  0000       0111111111            123357999999999999999999886533

This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.

>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins

Probab=99.88  E-value=1.8e-21  Score=143.35  Aligned_cols=156  Identities=19%  Similarity=0.203  Sum_probs=107.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE---EEEeCCceEEEeCCCCccccchhHHHHHHHHHHHHHHh
Q 029158           23 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS   99 (198)
Q Consensus        23 ~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~---~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~   99 (198)
                      +|+++|++|+|||||+++|.+..  ....+++++|.+..   +...+.++++|||||+.+.....      ..+..+++.
T Consensus         2 ~v~lvG~~~~GKStLl~~Ltg~~--~~v~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~------~~~~~~~l~   73 (233)
T cd01896           2 RVALVGFPSVGKSTLLSKLTNTK--SEVAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADG------KGRGRQVIA   73 (233)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC--ccccCCCCccccceEEEEEECCeEEEEEECCCcccccccc------hhHHHHHHH
Confidence            68999999999999999999874  44667777775433   33447789999999975432111      122334444


Q ss_pred             cccccceEEEEEeCCCCCCc------------------------------------------CcHHH-HHHHHh------
Q 029158          100 TRVSLKRVCLLIDTKWGVKP------------------------------------------RDHEL-ISLMER------  130 (198)
Q Consensus       100 ~~~~~d~vi~v~d~~~~~~~------------------------------------------~~~~~-~~~~~~------  130 (198)
                      ....+|++++|+|+++....                                          .+.+. ...+.+      
T Consensus        74 ~~~~ad~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~  153 (233)
T cd01896          74 VARTADLILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNA  153 (233)
T ss_pred             hhccCCEEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeE
Confidence            55669999999998652210                                          11111 111111      


Q ss_pred             ---------------------hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEeccCCCCChHHHHHHH
Q 029158          131 ---------------------SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVL  189 (198)
Q Consensus       131 ---------------------~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~~~gi~~l~~~i  189 (198)
                                           ...|+++|+||+|+...++...        +..    ..+++++||+++.|++++++.|
T Consensus       154 ~v~~~~~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~~~~~~~--------~~~----~~~~~~~SA~~g~gi~~l~~~i  221 (233)
T cd01896         154 DVLIREDITVDDLIDVIEGNRVYIPCLYVYNKIDLISIEELDL--------LAR----QPNSVVISAEKGLNLDELKERI  221 (233)
T ss_pred             EEEEccCCCHHHHHHHHhCCceEeeEEEEEECccCCCHHHHHH--------Hhc----CCCEEEEcCCCCCCHHHHHHHH
Confidence                                 1258999999999987554431        111    2468999999999999999999


Q ss_pred             HHhhccccC
Q 029158          190 SKIARFAKV  198 (198)
Q Consensus       190 ~~~~~~~r~  198 (198)
                      .+.+..+||
T Consensus       222 ~~~L~~irv  230 (233)
T cd01896         222 WDKLGLIRV  230 (233)
T ss_pred             HHHhCcEEE
Confidence            999999986

GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=99.88  E-value=1.3e-21  Score=143.05  Aligned_cols=157  Identities=13%  Similarity=0.065  Sum_probs=99.4

Q ss_pred             CCCCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeE-EEEEE--eCCceEEEeCCCCccccchhHHHHHHHHH
Q 029158           17 PAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT-INFFK--LGTKLCLVDLPGYGFAYAKEEVKDAWEEL   93 (198)
Q Consensus        17 ~~~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~-~~~~~--~~~~~~iiDtpG~~~~~~~~~~~~~~~~~   93 (198)
                      ++....+|+++|.+|+|||||+++++.........+..+.+.. ..+..  ....+.+|||||...          +..+
T Consensus         9 ~~~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~----------~~~~   78 (219)
T PLN03071          9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK----------FGGL   78 (219)
T ss_pred             cCCCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchh----------hhhh
Confidence            3456679999999999999999998876322222222222211 11211  235789999999522          2233


Q ss_pred             HHHHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHh--hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCC
Q 029158           94 VKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER--SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQP  170 (198)
Q Consensus        94 ~~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (198)
                      ...|+.   .+|++++|+|.++..+-.. ..|+..+..  .+.|+++|+||+|+.......+   .+ +...   ....+
T Consensus        79 ~~~~~~---~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~~v~~~---~~-~~~~---~~~~~  148 (219)
T PLN03071         79 RDGYYI---HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK---QV-TFHR---KKNLQ  148 (219)
T ss_pred             hHHHcc---cccEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhhhhccCCHH---HH-HHHH---hcCCE
Confidence            334444   3899999999987322221 234444442  2689999999999964221111   11 1111   12478


Q ss_pred             cEEeccCCCCChHHHHHHHHHhh
Q 029158          171 VMMVSSKSGAGIRSLRTVLSKIA  193 (198)
Q Consensus       171 v~~~Sa~~~~gi~~l~~~i~~~~  193 (198)
                      ++++||++|.|+++++++|.+.+
T Consensus       149 ~~e~SAk~~~~i~~~f~~l~~~~  171 (219)
T PLN03071        149 YYEISAKSNYNFEKPFLYLARKL  171 (219)
T ss_pred             EEEcCCCCCCCHHHHHHHHHHHH
Confidence            99999999999999999998765

>cd04144 Ras2 Ras2 subfamily

Probab=99.88  E-value=1.1e-21  Score=140.69  Aligned_cols=151  Identities=14%  Similarity=0.128  Sum_probs=95.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEE-----EEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHHH
Q 029158           23 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI-----NFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY   97 (198)
Q Consensus        23 ~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~-----~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~   97 (198)
                      +|+++|.+|+|||||+++|+....   ...+.+++.+.     .+......+.+|||||..          .+..+...+
T Consensus         1 ki~ivG~~~vGKTsli~~l~~~~f---~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~----------~~~~~~~~~   67 (190)
T cd04144           1 KLVVLGDGGVGKTALTIQLCLNHF---VETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQE----------EYTALRDQW   67 (190)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCC---CccCCCchHhhEEEEEEECCEEEEEEEEECCCch----------hhHHHHHHH
Confidence            589999999999999999997631   22233333211     111122458899999952          123333344


Q ss_pred             HhcccccceEEEEEeCCCCCCcCc-HHHHHHHHh------hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCC
Q 029158           98 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER------SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQP  170 (198)
Q Consensus        98 ~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~------~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (198)
                      +..   +|++++|+|.++..+... ..++..+..      .+.|+++|+||+|+........  ...++....   .+.+
T Consensus        68 ~~~---ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~--~~~~~~~~~---~~~~  139 (190)
T cd04144          68 IRE---GEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVST--EEGAALARR---LGCE  139 (190)
T ss_pred             HHh---CCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCH--HHHHHHHHH---hCCE
Confidence            444   899999999976322222 234444432      3589999999999965332211  111111111   1368


Q ss_pred             cEEeccCCCCChHHHHHHHHHhhc
Q 029158          171 VMMVSSKSGAGIRSLRTVLSKIAR  194 (198)
Q Consensus       171 v~~~Sa~~~~gi~~l~~~i~~~~~  194 (198)
                      ++++||++|.|++++++++.+.+.
T Consensus       140 ~~e~SAk~~~~v~~l~~~l~~~l~  163 (190)
T cd04144         140 FIEASAKTNVNVERAFYTLVRALR  163 (190)
T ss_pred             EEEecCCCCCCHHHHHHHHHHHHH
Confidence            999999999999999999987654

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd01860 Rab5_related Rab5-related subfamily

Probab=99.88  E-value=1.8e-21  Score=136.08  Aligned_cols=154  Identities=20%  Similarity=0.207  Sum_probs=96.8

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCc---eeEEEEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHHHH
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGL---TQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV   98 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~---t~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~   98 (198)
                      .+|+++|++|+|||||++++++.+......+..+.   +....+...+..+.+|||||..          .+......++
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~----------~~~~~~~~~~   71 (163)
T cd01860           2 FKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQE----------RYRSLAPMYY   71 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchH----------HHHHHHHHHh
Confidence            58999999999999999999998422212222221   1222233334578999999941          1222233333


Q ss_pred             hcccccceEEEEEeCCCCCC-cCcHHHHHHHHhh---CCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEe
Q 029158           99 STRVSLKRVCLLIDTKWGVK-PRDHELISLMERS---QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMV  174 (198)
Q Consensus        99 ~~~~~~d~vi~v~d~~~~~~-~~~~~~~~~~~~~---~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  174 (198)
                      .   .+|++++|+|+++... .....++..+...   +.|+++++||+|+.......  .+...+.....   ..+++++
T Consensus        72 ~---~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~--~~~~~~~~~~~---~~~~~~~  143 (163)
T cd01860          72 R---GAAAAIVVYDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQVS--TEEAQEYADEN---GLLFFET  143 (163)
T ss_pred             c---cCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCcCC--HHHHHHHHHHc---CCEEEEE
Confidence            3   3899999999975321 1123344444333   58899999999987432111  11122222221   3679999


Q ss_pred             ccCCCCChHHHHHHHHHhh
Q 029158          175 SSKSGAGIRSLRTVLSKIA  193 (198)
Q Consensus       175 Sa~~~~gi~~l~~~i~~~~  193 (198)
                      ||++|.|++++++++.+.+
T Consensus       144 Sa~~~~~v~~l~~~l~~~l  162 (163)
T cd01860         144 SAKTGENVNELFTEIAKKL  162 (163)
T ss_pred             ECCCCCCHHHHHHHHHHHh
Confidence            9999999999999998765

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]

Probab=99.88  E-value=7.9e-22  Score=159.02  Aligned_cols=157  Identities=22%  Similarity=0.300  Sum_probs=121.7

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE---EEEeCCceEEEeCCCCcc-ccchhHHHHHHHHHHHH
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGF-AYAKEEVKDAWEELVKE   96 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~---~~~~~~~~~iiDtpG~~~-~~~~~~~~~~~~~~~~~   96 (198)
                      ..+|+++|.||+|||||+|+|++.+  ..+++++++|.+..   +...+..++++|+||.-+ +....+     +...++
T Consensus         3 ~~~valvGNPNvGKTtlFN~LTG~~--q~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~D-----E~Var~   75 (653)
T COG0370           3 KLTVALVGNPNVGKTTLFNALTGAN--QKVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSED-----EKVARD   75 (653)
T ss_pred             cceEEEecCCCccHHHHHHHHhccC--ceecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCch-----HHHHHH
Confidence            4569999999999999999999985  88999999998754   344467899999999633 111111     444555


Q ss_pred             HHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEecc
Q 029158           97 YVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSS  176 (198)
Q Consensus        97 ~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa  176 (198)
                      |+. ...+|+++-|+||++  -+...++.-++.+.+.|+++++|++|.......+-..+.+++.+      ++|++++||
T Consensus        76 ~ll-~~~~D~ivnVvDAtn--LeRnLyltlQLlE~g~p~ilaLNm~D~A~~~Gi~ID~~~L~~~L------GvPVv~tvA  146 (653)
T COG0370          76 FLL-EGKPDLIVNVVDATN--LERNLYLTLQLLELGIPMILALNMIDEAKKRGIRIDIEKLSKLL------GVPVVPTVA  146 (653)
T ss_pred             HHh-cCCCCEEEEEcccch--HHHHHHHHHHHHHcCCCeEEEeccHhhHHhcCCcccHHHHHHHh------CCCEEEEEe
Confidence            554 235799999999986  45556666667778999999999999987665554556666655      599999999


Q ss_pred             CCCCChHHHHHHHHHhh
Q 029158          177 KSGAGIRSLRTVLSKIA  193 (198)
Q Consensus       177 ~~~~gi~~l~~~i~~~~  193 (198)
                      ++|+|++++++.+.+..
T Consensus       147 ~~g~G~~~l~~~i~~~~  163 (653)
T COG0370         147 KRGEGLEELKRAIIELA  163 (653)
T ss_pred             ecCCCHHHHHHHHHHhc
Confidence            99999999999997644

>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.88  E-value=1.4e-22  Score=139.37  Aligned_cols=158  Identities=16%  Similarity=0.163  Sum_probs=107.5

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCC---ceeEEEEEEeCCceEEEeCCCCccccchhHHHHHHHHHHH
Q 029158           19 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPG---LTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVK   95 (198)
Q Consensus        19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~---~t~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~   95 (198)
                      ....+|+++|.+++|||||+-++....+.....+..+   .|+.+........+.||||.|.          +.+..+..
T Consensus         3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQ----------ERy~slap   72 (200)
T KOG0092|consen    3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQ----------ERYHSLAP   72 (200)
T ss_pred             cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCc----------cccccccc
Confidence            3567899999999999999999998742221122111   1222223223467889999995          34566777


Q ss_pred             HHHhcccccceEEEEEeCCCCCC-cCcHHHHHHHHhhC---CcEEEEEeccCCCCcHH--HHHHHHHHHHHHHhccCCCC
Q 029158           96 EYVSTRVSLKRVCLLIDTKWGVK-PRDHELISLMERSQ---TKYQVVLTKTDTVFPID--VARRAMQIEESLKANNSLVQ  169 (198)
Q Consensus        96 ~~~~~~~~~d~vi~v~d~~~~~~-~~~~~~~~~~~~~~---~p~iiv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~  169 (198)
                      .|+++   ++++++|+|..+.-+ ..-+.|++.|++..   +-+.+|+||+|+.....  .++.....++       .+.
T Consensus        73 MYyRg---A~AAivvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~V~~~ea~~yAe~-------~gl  142 (200)
T KOG0092|consen   73 MYYRG---ANAAIVVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLERREVEFEEAQAYAES-------QGL  142 (200)
T ss_pred             ceecC---CcEEEEEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhcccccHHHHHHHHHh-------cCC
Confidence            78877   889999999986222 12245666666543   33556999999987432  2232222222       368


Q ss_pred             CcEEeccCCCCChHHHHHHHHHhhccc
Q 029158          170 PVMMVSSKSGAGIRSLRTVLSKIARFA  196 (198)
Q Consensus       170 ~v~~~Sa~~~~gi~~l~~~i~~~~~~~  196 (198)
                      .++++|||+|.|+++++..|.+.++..
T Consensus       143 l~~ETSAKTg~Nv~~if~~Ia~~lp~~  169 (200)
T KOG0092|consen  143 LFFETSAKTGENVNEIFQAIAEKLPCS  169 (200)
T ss_pred             EEEEEecccccCHHHHHHHHHHhccCc
Confidence            999999999999999999999887653

>PRK12317 elongation factor 1-alpha; Reviewed

Probab=99.88  E-value=1.4e-21  Score=155.99  Aligned_cols=153  Identities=21%  Similarity=0.260  Sum_probs=107.5

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCccce-----------------------------eecCCCCceeEEEEEE---eC
Q 029158           19 PDLPEIAFAGRSNVGKSSMLNALTRQWGVV-----------------------------RTSDKPGLTQTINFFK---LG   66 (198)
Q Consensus        19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~~~-----------------------------~~~~~~~~t~~~~~~~---~~   66 (198)
                      ....+|+++|++++|||||+++|+......                             .....+++|.+.....   .+
T Consensus         4 k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~   83 (425)
T PRK12317          4 KPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDK   83 (425)
T ss_pred             CCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCC
Confidence            355789999999999999999998542100                             0111466777765433   36


Q ss_pred             CceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCC--CCCcCcHHHHHHHHhhCC-cEEEEEeccC
Q 029158           67 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKW--GVKPRDHELISLMERSQT-KYQVVLTKTD  143 (198)
Q Consensus        67 ~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~--~~~~~~~~~~~~~~~~~~-p~iiv~nK~D  143 (198)
                      ..+.+|||||+             ..+...++.....+|++++|+|+++  ++...+.+.+..+...+. |+++++||+|
T Consensus        84 ~~i~liDtpG~-------------~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~~~~iivviNK~D  150 (425)
T PRK12317         84 YYFTIVDCPGH-------------RDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLGINQLIVAINKMD  150 (425)
T ss_pred             eEEEEEECCCc-------------ccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcCCCeEEEEEEccc
Confidence            78999999996             2233344555566999999999998  777777777777766665 6899999999


Q ss_pred             CCCcH--HHHHHHHHHHHHHHhccC--CCCCcEEeccCCCCChHH
Q 029158          144 TVFPI--DVARRAMQIEESLKANNS--LVQPVMMVSSKSGAGIRS  184 (198)
Q Consensus       144 l~~~~--~~~~~~~~~~~~~~~~~~--~~~~v~~~Sa~~~~gi~~  184 (198)
                      +....  ......+++++.+.....  ...+++++||++|+|+++
T Consensus       151 l~~~~~~~~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~  195 (425)
T PRK12317        151 AVNYDEKRYEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVK  195 (425)
T ss_pred             cccccHHHHHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCccc
Confidence            97532  233444555555443321  136899999999999986

>cd01866 Rab2 Rab2 subfamily

Probab=99.88  E-value=2.9e-21  Score=135.84  Aligned_cols=155  Identities=17%  Similarity=0.099  Sum_probs=96.7

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeE---EEEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHHH
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT---INFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY   97 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~---~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~   97 (198)
                      ..+|+++|.+|+|||||++++.+...........+.+..   .........+.+|||||..          .+..+...+
T Consensus         4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~----------~~~~~~~~~   73 (168)
T cd01866           4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQE----------SFRSITRSY   73 (168)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcH----------HHHHHHHHH
Confidence            468999999999999999999987421111111111111   1122223578999999941          122333334


Q ss_pred             HhcccccceEEEEEeCCCCCCcCc-HHHHHHHHh---hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEE
Q 029158           98 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMM  173 (198)
Q Consensus        98 ~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~---~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  173 (198)
                      +.   .+|++++|+|++...+... ..++..+..   .+.|+++|+||+|+.......  .++.......   ...++++
T Consensus        74 ~~---~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~--~~~~~~~~~~---~~~~~~e  145 (168)
T cd01866          74 YR---GAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREVS--YEEGEAFAKE---HGLIFME  145 (168)
T ss_pred             hc---cCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccCCC--HHHHHHHHHH---cCCEEEE
Confidence            43   4899999999985222222 234444443   268999999999997432211  1112222221   1467999


Q ss_pred             eccCCCCChHHHHHHHHHhh
Q 029158          174 VSSKSGAGIRSLRTVLSKIA  193 (198)
Q Consensus       174 ~Sa~~~~gi~~l~~~i~~~~  193 (198)
                      +||++++|+++++.++.+.+
T Consensus       146 ~Sa~~~~~i~~~~~~~~~~~  165 (168)
T cd01866         146 TSAKTASNVEEAFINTAKEI  165 (168)
T ss_pred             EeCCCCCCHHHHHHHHHHHH
Confidence            99999999999999998765

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>PRK04000 translation initiation factor IF-2 subunit gamma; Validated

Probab=99.88  E-value=1.9e-21  Score=153.98  Aligned_cols=163  Identities=21%  Similarity=0.277  Sum_probs=115.1

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCc-cceeecCCCCceeEEEEEE-----------------e------------CCc
Q 029158           19 PDLPEIAFAGRSNVGKSSMLNALTRQW-GVVRTSDKPGLTQTINFFK-----------------L------------GTK   68 (198)
Q Consensus        19 ~~~~~v~~vG~~~~GKSsli~~l~~~~-~~~~~~~~~~~t~~~~~~~-----------------~------------~~~   68 (198)
                      ....+|+++|..++|||||+.+|.+.. .........+.|.+..+..                 .            ...
T Consensus         7 ~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (411)
T PRK04000          7 QPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLRR   86 (411)
T ss_pred             CCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccccE
Confidence            445789999999999999999997641 0011111234444432210                 0            246


Q ss_pred             eEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCC-CcCcHHHHHHHHhhCC-cEEEEEeccCCCC
Q 029158           69 LCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGV-KPRDHELISLMERSQT-KYQVVLTKTDTVF  146 (198)
Q Consensus        69 ~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~-~~~~~~~~~~~~~~~~-p~iiv~nK~Dl~~  146 (198)
                      +.+|||||+             ..+...++.....+|++++|+|+.++. .....+.+..+...+. |+++|+||+|+.+
T Consensus        87 i~liDtPG~-------------~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~~i~~iiVVlNK~Dl~~  153 (411)
T PRK04000         87 VSFVDAPGH-------------ETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDIIGIKNIVIVQNKIDLVS  153 (411)
T ss_pred             EEEEECCCH-------------HHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEEeecccc
Confidence            899999996             456667888878899999999999876 4555666666666564 6899999999987


Q ss_pred             cHHHHHHHHHHHHHHHhccCCCCCcEEeccCCCCChHHHHHHHHHhhc
Q 029158          147 PIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR  194 (198)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~~~gi~~l~~~i~~~~~  194 (198)
                      ........+.+++.+........+++++||++|+|+++|+++|...+.
T Consensus       154 ~~~~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~  201 (411)
T PRK04000        154 KERALENYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIP  201 (411)
T ss_pred             chhHHHHHHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCC
Confidence            655444445555444332233578999999999999999999988654

>cd04128 Spg1 Spg1p

Probab=99.88  E-value=1.1e-21  Score=139.68  Aligned_cols=154  Identities=14%  Similarity=0.111  Sum_probs=95.6

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCce-eEE-----EEEEeCCceEEEeCCCCccccchhHHHHHHHHHHH
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT-QTI-----NFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVK   95 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t-~~~-----~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~   95 (198)
                      .+|+++|.+|+|||||++++++...   ...+.+|. .+.     ........+.+|||+|..          .+..+..
T Consensus         1 ~Ki~vlG~~~vGKTsLi~~~~~~~f---~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~----------~~~~~~~   67 (182)
T cd04128           1 LKIGLLGDAQIGKTSLMVKYVEGEF---DEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQR----------EFINMLP   67 (182)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCC---CCCCCCccceEEEEEEEEECCEEEEEEEEeCCCch----------hHHHhhH
Confidence            3799999999999999999998732   22233222 121     111123578999999952          1233333


Q ss_pred             HHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHhh---CCcEEEEEeccCCCCc---HHHHHHHHHHHHHHHhccCCC
Q 029158           96 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS---QTKYQVVLTKTDTVFP---IDVARRAMQIEESLKANNSLV  168 (198)
Q Consensus        96 ~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~~---~~p~iiv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~  168 (198)
                      .++.   .+|++++|+|.++..+..+ .+++..+...   ..| ++|+||+|+...   .+.....+..++....   .+
T Consensus        68 ~~~~---~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~---~~  140 (182)
T cd04128          68 LVCN---DAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKA---MK  140 (182)
T ss_pred             HHCc---CCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccccchhhhhhHHHHHHHHHH---cC
Confidence            3333   4899999999976322222 2344444432   356 689999999632   1111122222222222   23


Q ss_pred             CCcEEeccCCCCChHHHHHHHHHhhcc
Q 029158          169 QPVMMVSSKSGAGIRSLRTVLSKIARF  195 (198)
Q Consensus       169 ~~v~~~Sa~~~~gi~~l~~~i~~~~~~  195 (198)
                      .+++++||++|.|++++++++.+.+-.
T Consensus       141 ~~~~e~SAk~g~~v~~lf~~l~~~l~~  167 (182)
T cd04128         141 APLIFCSTSHSINVQKIFKIVLAKAFD  167 (182)
T ss_pred             CEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence            789999999999999999999876543

Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are

>cd04134 Rho3 Rho3 subfamily

Probab=99.88  E-value=1.4e-21  Score=140.03  Aligned_cols=156  Identities=17%  Similarity=0.086  Sum_probs=98.1

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeE-----EEEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHH
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT-----INFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE   96 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~-----~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~   96 (198)
                      .+|+++|.+|+|||||++++.+...   ...+.++...     .........+.+|||||...          +..+...
T Consensus         1 ~kivivG~~~vGKTsli~~~~~~~~---~~~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~----------~~~l~~~   67 (189)
T cd04134           1 RKVVVLGDGACGKTSLLNVFTRGYF---PQVYEPTVFENYVHDIFVDGLHIELSLWDTAGQEE----------FDRLRSL   67 (189)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCC---CCccCCcceeeeEEEEEECCEEEEEEEEECCCChh----------ccccccc
Confidence            4799999999999999999998742   1222222211     11111235789999999522          1222222


Q ss_pred             HHhcccccceEEEEEeCCCCCCcCc--HHHHHHHHhh--CCcEEEEEeccCCCCcHHHHHHH----------HHHHHHHH
Q 029158           97 YVSTRVSLKRVCLLIDTKWGVKPRD--HELISLMERS--QTKYQVVLTKTDTVFPIDVARRA----------MQIEESLK  162 (198)
Q Consensus        97 ~~~~~~~~d~vi~v~d~~~~~~~~~--~~~~~~~~~~--~~p~iiv~nK~Dl~~~~~~~~~~----------~~~~~~~~  162 (198)
                      ++   ..+|++++|+|.++..+...  ..++..+...  +.|+++|+||+|+..........          +...+...
T Consensus        68 ~~---~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~  144 (189)
T cd04134          68 SY---ADTDVIMLCFSVDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAK  144 (189)
T ss_pred             cc---cCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHH
Confidence            33   34899999999876322222  2355555433  68999999999998654332211          11111111


Q ss_pred             hccCCCCCcEEeccCCCCChHHHHHHHHHhhcc
Q 029158          163 ANNSLVQPVMMVSSKSGAGIRSLRTVLSKIARF  195 (198)
Q Consensus       163 ~~~~~~~~v~~~Sa~~~~gi~~l~~~i~~~~~~  195 (198)
                      .  ...++++++||++|.|++++++++.+.+-.
T Consensus       145 ~--~~~~~~~e~SAk~~~~v~e~f~~l~~~~~~  175 (189)
T cd04134         145 R--INALRYLECSAKLNRGVNEAFTEAARVALN  175 (189)
T ss_pred             H--cCCCEEEEccCCcCCCHHHHHHHHHHHHhc
Confidence            1  113679999999999999999999987643

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd01863 Rab18 Rab18 subfamily

Probab=99.88  E-value=1.3e-21  Score=136.51  Aligned_cols=152  Identities=18%  Similarity=0.147  Sum_probs=95.4

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE---EEEeCCceEEEeCCCCccccchhHHHHHHHHHHHHHH
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV   98 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~---~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~   98 (198)
                      .+|+++|++|+|||||+++|.+........+..+.+....   +......+.+|||||...          +......++
T Consensus         1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~----------~~~~~~~~~   70 (161)
T cd01863           1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQER----------FRTLTSSYY   70 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchh----------hhhhhHHHh
Confidence            3799999999999999999998742222222222222221   111235789999999521          122223333


Q ss_pred             hcccccceEEEEEeCCCCCCcCc-HHHHHHHHh----hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEE
Q 029158           99 STRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMM  173 (198)
Q Consensus        99 ~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~----~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  173 (198)
                         +.+|++++++|+++..+... ..++..+..    .+.|+++|+||+|+.......+....+...      ...++++
T Consensus        71 ---~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~~~~~~~~~~~~~------~~~~~~~  141 (161)
T cd01863          71 ---RGAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENREVTREEGLKFARK------HNMLFIE  141 (161)
T ss_pred             ---CCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccccccCHHHHHHHHHH------cCCEEEE
Confidence               34899999999876322222 223333332    368899999999997433111111122111      1478999


Q ss_pred             eccCCCCChHHHHHHHHHh
Q 029158          174 VSSKSGAGIRSLRTVLSKI  192 (198)
Q Consensus       174 ~Sa~~~~gi~~l~~~i~~~  192 (198)
                      +||++|+|++++++++.+.
T Consensus       142 ~Sa~~~~gi~~~~~~~~~~  160 (161)
T cd01863         142 TSAKTRDGVQQAFEELVEK  160 (161)
T ss_pred             EecCCCCCHHHHHHHHHHh
Confidence            9999999999999998764

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>smart00175 RAB Rab subfamily of small GTPases

Probab=99.88  E-value=4.1e-21  Score=134.28  Aligned_cols=153  Identities=18%  Similarity=0.136  Sum_probs=96.3

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeE--EE-EEE--eCCceEEEeCCCCccccchhHHHHHHHHHHHH
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT--IN-FFK--LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE   96 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~--~~-~~~--~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~   96 (198)
                      .+|+++|++|+|||||++++.+...  .....+..+.+  .. +..  ....+.+|||||..          .+......
T Consensus         1 ~kv~v~G~~~~GKTtli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~----------~~~~~~~~   68 (164)
T smart00175        1 FKIILIGDSGVGKSSLLSRFTDGKF--SEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQE----------RFRSITSS   68 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCC--CCCCCCceeeEEEEEEEEECCEEEEEEEEECCChH----------HHHHHHHH
Confidence            3799999999999999999998731  11111111111  11 111  12578899999941          22333334


Q ss_pred             HHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHh---hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcE
Q 029158           97 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVM  172 (198)
Q Consensus        97 ~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~---~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~  172 (198)
                      ++.   .+|++++|+|+++..+... ..++..+..   .+.|+++|+||+|+.......  .+..++....   .+.+++
T Consensus        69 ~~~---~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~--~~~~~~~~~~---~~~~~~  140 (164)
T smart00175       69 YYR---GAVGALLVYDITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVS--REEAEAFAEE---HGLPFF  140 (164)
T ss_pred             HhC---CCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcccccCCC--HHHHHHHHHH---cCCeEE
Confidence            443   4899999999986322222 224444433   358999999999987633211  0111122211   136799


Q ss_pred             EeccCCCCChHHHHHHHHHhhc
Q 029158          173 MVSSKSGAGIRSLRTVLSKIAR  194 (198)
Q Consensus       173 ~~Sa~~~~gi~~l~~~i~~~~~  194 (198)
                      ++||++++|+++++++|.+.+.
T Consensus       141 e~Sa~~~~~i~~l~~~i~~~~~  162 (164)
T smart00175      141 ETSAKTNTNVEEAFEELAREIL  162 (164)
T ss_pred             EEeCCCCCCHHHHHHHHHHHHh
Confidence            9999999999999999998763

Rab GTPases are implicated in vesicle trafficking.

>cd04112 Rab26 Rab26 subfamily

Probab=99.88  E-value=3.7e-21  Score=138.08  Aligned_cols=155  Identities=17%  Similarity=0.161  Sum_probs=96.9

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCcee-EE--EEEE---eCCceEEEeCCCCccccchhHHHHHHHHHHH
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQ-TI--NFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVK   95 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~-~~--~~~~---~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~   95 (198)
                      .+|+++|.+|+|||||++++.+...  ....+..++. +.  ....   ....+.+|||||..          .+.....
T Consensus         1 ~Ki~vvG~~~vGKTSli~~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~----------~~~~~~~   68 (191)
T cd04112           1 FKVMLLGDSGVGKTCLLVRFKDGAF--LNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQE----------RFRSVTH   68 (191)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCC--CccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcH----------HHHHhhH
Confidence            3799999999999999999998731  1122222221 11  1111   23578999999941          1222233


Q ss_pred             HHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHh---hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCc
Q 029158           96 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPV  171 (198)
Q Consensus        96 ~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~---~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v  171 (198)
                      .++.   .+|++++|+|+++..+... ..++..+..   .+.|+++|+||+|+........  +..+.....   .+.++
T Consensus        69 ~~~~---~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~~--~~~~~l~~~---~~~~~  140 (191)
T cd04112          69 AYYR---DAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVKR--EDGERLAKE---YGVPF  140 (191)
T ss_pred             HHcc---CCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhccccCH--HHHHHHHHH---cCCeE
Confidence            3433   4899999999976322111 233444433   2589999999999964321110  111111111   14689


Q ss_pred             EEeccCCCCChHHHHHHHHHhhccc
Q 029158          172 MMVSSKSGAGIRSLRTVLSKIARFA  196 (198)
Q Consensus       172 ~~~Sa~~~~gi~~l~~~i~~~~~~~  196 (198)
                      +++||++|+|+++++++|.+.+...
T Consensus       141 ~e~Sa~~~~~v~~l~~~l~~~~~~~  165 (191)
T cd04112         141 METSAKTGLNVELAFTAVAKELKHR  165 (191)
T ss_pred             EEEeCCCCCCHHHHHHHHHHHHHHh
Confidence            9999999999999999999877544

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>PRK12736 elongation factor Tu; Reviewed

Probab=99.88  E-value=4.2e-21  Score=151.51  Aligned_cols=163  Identities=20%  Similarity=0.242  Sum_probs=119.4

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCcc-----c---------eeecCCCCceeEEEEEE---eCCceEEEeCCCCcccc
Q 029158           19 PDLPEIAFAGRSNVGKSSMLNALTRQWG-----V---------VRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAY   81 (198)
Q Consensus        19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~-----~---------~~~~~~~~~t~~~~~~~---~~~~~~iiDtpG~~~~~   81 (198)
                      ....+|+++|+.++|||||+++|++...     .         .......++|.+.....   .+.++.++||||+    
T Consensus        10 k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh----   85 (394)
T PRK12736         10 KPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGH----   85 (394)
T ss_pred             CCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCH----
Confidence            3457899999999999999999986310     0         01111345666554222   3567999999996    


Q ss_pred             chhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCc-EEEEEeccCCCCcHHHHH-HHHHHHH
Q 029158           82 AKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKTDTVFPIDVAR-RAMQIEE  159 (198)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~~~~~~-~~~~~~~  159 (198)
                               .++...++.....+|++++|+|+..+....+.+++..+...++| +|+++||+|+.+.++..+ ..+++.+
T Consensus        86 ---------~~f~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~g~~~~IvviNK~D~~~~~~~~~~i~~~i~~  156 (394)
T PRK12736         86 ---------ADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYLVVFLNKVDLVDDEELLELVEMEVRE  156 (394)
T ss_pred             ---------HHHHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCEEEEEEEecCCcchHHHHHHHHHHHHH
Confidence                     45666777777789999999999998888888888888888898 678999999986544332 3345665


Q ss_pred             HHHhccC--CCCCcEEeccCCCC--------ChHHHHHHHHHhhc
Q 029158          160 SLKANNS--LVQPVMMVSSKSGA--------GIRSLRTVLSKIAR  194 (198)
Q Consensus       160 ~~~~~~~--~~~~v~~~Sa~~~~--------gi~~l~~~i~~~~~  194 (198)
                      .+.....  ...|++++||.+|.        ++++|++.+.+.++
T Consensus       157 ~l~~~~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp  201 (394)
T PRK12736        157 LLSEYDFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIP  201 (394)
T ss_pred             HHHHhCCCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCC
Confidence            5544322  24789999999983        67899988887654

>cd04176 Rap2 Rap2 subgroup

Probab=99.88  E-value=9.6e-22  Score=137.53  Aligned_cols=150  Identities=15%  Similarity=0.120  Sum_probs=95.1

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeE-----EEEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHH
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT-----INFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE   96 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~-----~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~   96 (198)
                      .+|+++|.+|+|||||+++++....   ...+.++..+     ..+......+.+|||||...          +..+...
T Consensus         2 ~ki~i~G~~~vGKTsl~~~~~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~----------~~~~~~~   68 (163)
T cd04176           2 YKVVVLGSGGVGKSALTVQFVSGTF---IEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQ----------FASMRDL   68 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCC---CCCCCCchhheEEEEEEECCEEEEEEEEECCCccc----------ccchHHH
Confidence            5799999999999999999998732   1222233221     11111234588999999522          1233334


Q ss_pred             HHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHh----hCCcEEEEEeccCCCCcHHHHH-HHHHHHHHHHhccCCCCC
Q 029158           97 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPIDVAR-RAMQIEESLKANNSLVQP  170 (198)
Q Consensus        97 ~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~----~~~p~iiv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~~~  170 (198)
                      ++..   +|++++|+|.++.-+-.+ ..++..+..    .+.|+++|+||+|+........ ....+.+.      .+.+
T Consensus        69 ~~~~---ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~------~~~~  139 (163)
T cd04176          69 YIKN---GQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEE------WGCP  139 (163)
T ss_pred             HHhh---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHHH------hCCE
Confidence            4443   899999999976321111 233333332    3689999999999965332111 11222211      1368


Q ss_pred             cEEeccCCCCChHHHHHHHHHhh
Q 029158          171 VMMVSSKSGAGIRSLRTVLSKIA  193 (198)
Q Consensus       171 v~~~Sa~~~~gi~~l~~~i~~~~  193 (198)
                      ++++||++|.|++++++++.+.+
T Consensus       140 ~~~~Sa~~~~~v~~l~~~l~~~l  162 (163)
T cd04176         140 FMETSAKSKTMVNELFAEIVRQM  162 (163)
T ss_pred             EEEecCCCCCCHHHHHHHHHHhc
Confidence            99999999999999999998764

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>cd04110 Rab35 Rab35 subfamily

Probab=99.88  E-value=1.8e-21  Score=140.56  Aligned_cols=153  Identities=16%  Similarity=0.132  Sum_probs=97.2

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCce-eEE---EE--EEeCCceEEEeCCCCccccchhHHHHHHHHH
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT-QTI---NF--FKLGTKLCLVDLPGYGFAYAKEEVKDAWEEL   93 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t-~~~---~~--~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~   93 (198)
                      ...+|+++|++|+|||||++++.+...   ...+.+|. .+.   .+  ......+.+|||||..          .+..+
T Consensus         5 ~~~kivvvG~~~vGKTsli~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~----------~~~~~   71 (199)
T cd04110           5 HLFKLLIIGDSGVGKSSLLLRFADNTF---SGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQE----------RFRTI   71 (199)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCC---CCCcCccccceeEEEEEEECCEEEEEEEEeCCCch----------hHHHH
Confidence            467999999999999999999998731   11222221 111   11  1123468899999952          12333


Q ss_pred             HHHHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHhh--CCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCC
Q 029158           94 VKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS--QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQP  170 (198)
Q Consensus        94 ~~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~~--~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (198)
                      ...++..   +|++++|+|+++..+-.. ..++..+...  ..|+++|+||+|+.......  .+...+....   ...+
T Consensus        72 ~~~~~~~---a~~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~piivVgNK~Dl~~~~~~~--~~~~~~~~~~---~~~~  143 (199)
T cd04110          72 TSTYYRG---THGVIVVYDVTNGESFVNVKRWLQEIEQNCDDVCKVLVGNKNDDPERKVVE--TEDAYKFAGQ---MGIS  143 (199)
T ss_pred             HHHHhCC---CcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccccC--HHHHHHHHHH---cCCE
Confidence            3444443   899999999976322111 2344444432  58999999999997543221  1111111111   1378


Q ss_pred             cEEeccCCCCChHHHHHHHHHhh
Q 029158          171 VMMVSSKSGAGIRSLRTVLSKIA  193 (198)
Q Consensus       171 v~~~Sa~~~~gi~~l~~~i~~~~  193 (198)
                      ++++||++|.|+++++++|...+
T Consensus       144 ~~e~Sa~~~~gi~~lf~~l~~~~  166 (199)
T cd04110         144 LFETSAKENINVEEMFNCITELV  166 (199)
T ss_pred             EEEEECCCCcCHHHHHHHHHHHH
Confidence            99999999999999999998765

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>cd00154 Rab Rab family

Probab=99.88  E-value=3.1e-21  Score=133.81  Aligned_cols=151  Identities=17%  Similarity=0.134  Sum_probs=94.3

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEE---eCCceEEEeCCCCccccchhHHHHHHHHHHHHHH
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV   98 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~   98 (198)
                      .+|+++|++|+|||||++++.+...........+.+.......   ....+.+||+||..          .+......++
T Consensus         1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~----------~~~~~~~~~~   70 (159)
T cd00154           1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQE----------RFRSITPSYY   70 (159)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChH----------HHHHHHHHHh
Confidence            4799999999999999999998741111111111111111112   24678999999951          1223333343


Q ss_pred             hcccccceEEEEEeCCCCCCcCc-HHHHHHHHhh---CCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEe
Q 029158           99 STRVSLKRVCLLIDTKWGVKPRD-HELISLMERS---QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMV  174 (198)
Q Consensus        99 ~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~~---~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  174 (198)
                      .   .+|++++++|+++...... ..++..+...   +.|+++++||+|+..+...  ..+.+.+....   ...+++++
T Consensus        71 ~---~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~~~~~~~~---~~~~~~~~  142 (159)
T cd00154          71 R---GAHGAILVYDITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQV--STEEAQQFAKE---NGLLFFET  142 (159)
T ss_pred             c---CCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccccccc--cHHHHHHHHHH---cCCeEEEE
Confidence            3   3899999999976211111 2344444443   4899999999999632211  11222222222   25789999


Q ss_pred             ccCCCCChHHHHHHHH
Q 029158          175 SSKSGAGIRSLRTVLS  190 (198)
Q Consensus       175 Sa~~~~gi~~l~~~i~  190 (198)
                      ||+++.|+++++++|.
T Consensus       143 sa~~~~~i~~~~~~i~  158 (159)
T cd00154         143 SAKTGENVEELFQSLA  158 (159)
T ss_pred             ecCCCCCHHHHHHHHh
Confidence            9999999999999986

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>COG1163 DRG Predicted GTPase [General function prediction only]

Probab=99.88  E-value=5.6e-22  Score=146.88  Aligned_cols=163  Identities=21%  Similarity=0.249  Sum_probs=123.0

Q ss_pred             CCCCCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEE---EEEEeCCceEEEeCCCCccccchhHHHHHHHH
Q 029158           16 FPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---NFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEE   92 (198)
Q Consensus        16 ~~~~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~---~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~   92 (198)
                      .++++-.+|+++|+|++|||||++.|.+.+  .++..|+.||...   .+-+.+.+++++|+||+.+.....      ..
T Consensus        58 V~KsGda~v~lVGfPsvGKStLL~~LTnt~--seva~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~g------~g  129 (365)
T COG1163          58 VKKSGDATVALVGFPSVGKSTLLNKLTNTK--SEVADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSG------RG  129 (365)
T ss_pred             EeccCCeEEEEEcCCCccHHHHHHHHhCCC--ccccccCceecccccceEeecCceEEEEcCcccccCcccC------CC
Confidence            356777899999999999999999999986  7889999988653   466778999999999987654433      22


Q ss_pred             HHHHHHhcccccceEEEEEeCCCCCCcCc------------------------------------------H--------
Q 029158           93 LVKEYVSTRVSLKRVCLLIDTKWGVKPRD------------------------------------------H--------  122 (198)
Q Consensus        93 ~~~~~~~~~~~~d~vi~v~d~~~~~~~~~------------------------------------------~--------  122 (198)
                      .-++.+...+.||++++|+|+..+....+                                          .        
T Consensus       130 rG~~vlsv~R~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~  209 (365)
T COG1163         130 RGRQVLSVARNADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILR  209 (365)
T ss_pred             CcceeeeeeccCCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHH
Confidence            23467777788999999999986433111                                          0        


Q ss_pred             ------------------HHHHHHHhh--CCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEeccCCCCCh
Q 029158          123 ------------------ELISLMERS--QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGI  182 (198)
Q Consensus       123 ------------------~~~~~~~~~--~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~~~gi  182 (198)
                                        ++.+.+...  -+|.+.|+||.|+...++.+.    +.+.        ...+++||+.+.|+
T Consensus       210 Ey~I~nA~V~Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~~e~~~~----l~~~--------~~~v~isa~~~~nl  277 (365)
T COG1163         210 EYRIHNADVLIREDVTLDDLIDALEGNRVYKPALYVVNKIDLPGLEELER----LARK--------PNSVPISAKKGINL  277 (365)
T ss_pred             HhCcccceEEEecCCcHHHHHHHHhhcceeeeeEEEEecccccCHHHHHH----HHhc--------cceEEEecccCCCH
Confidence                              111222211  259999999999998554432    2222        37899999999999


Q ss_pred             HHHHHHHHHhhccccC
Q 029158          183 RSLRTVLSKIARFAKV  198 (198)
Q Consensus       183 ~~l~~~i~~~~~~~r~  198 (198)
                      ++|.+.|.+.+..+||
T Consensus       278 d~L~e~i~~~L~liRV  293 (365)
T COG1163         278 DELKERIWDVLGLIRV  293 (365)
T ss_pred             HHHHHHHHHhhCeEEE
Confidence            9999999999999886

>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily

Probab=99.88  E-value=2.1e-21  Score=142.06  Aligned_cols=148  Identities=18%  Similarity=0.253  Sum_probs=99.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCccc-----------------------------eeecCCCCceeEEE---EEEeCCceE
Q 029158           23 EIAFAGRSNVGKSSMLNALTRQWGV-----------------------------VRTSDKPGLTQTIN---FFKLGTKLC   70 (198)
Q Consensus        23 ~v~~vG~~~~GKSsli~~l~~~~~~-----------------------------~~~~~~~~~t~~~~---~~~~~~~~~   70 (198)
                      +|+++|++++|||||+.+|+.....                             .......++|.+..   +...+..+.
T Consensus         1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~   80 (219)
T cd01883           1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT   80 (219)
T ss_pred             CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence            4899999999999999999743100                             00111234555533   333477899


Q ss_pred             EEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCC-------CCcCcHHHHHHHHhhC-CcEEEEEecc
Q 029158           71 LVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG-------VKPRDHELISLMERSQ-TKYQVVLTKT  142 (198)
Q Consensus        71 iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~-------~~~~~~~~~~~~~~~~-~p~iiv~nK~  142 (198)
                      ++||||+             ..+...++.....+|++++|+|+..+       ......+.+......+ .|+++++||+
T Consensus        81 liDtpG~-------------~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiivvNK~  147 (219)
T cd01883          81 ILDAPGH-------------RDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTLGVKQLIVAVNKM  147 (219)
T ss_pred             EEECCCh-------------HHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHcCCCeEEEEEEcc
Confidence            9999996             23344555666679999999999873       2334445555555555 6899999999


Q ss_pred             CCCC----cHHHHHHHHHHHHHHHhccC--CCCCcEEeccCCCCChH
Q 029158          143 DTVF----PIDVARRAMQIEESLKANNS--LVQPVMMVSSKSGAGIR  183 (198)
Q Consensus       143 Dl~~----~~~~~~~~~~~~~~~~~~~~--~~~~v~~~Sa~~~~gi~  183 (198)
                      |+..    ....++..+.+++.+.....  ...+++++||++|+|++
T Consensus       148 Dl~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~  194 (219)
T cd01883         148 DDVTVNWSEERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI  194 (219)
T ss_pred             ccccccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence            9984    23345555666555554322  24789999999999986

EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in

>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily

Probab=99.88  E-value=1.8e-21  Score=138.35  Aligned_cols=155  Identities=14%  Similarity=0.085  Sum_probs=98.4

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeE-----EEEEEeCCceEEEeCCCCccccchhHHHHHHHHH
Q 029158           19 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT-----INFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEEL   93 (198)
Q Consensus        19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~-----~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~   93 (198)
                      +...+|+++|.+|+|||||+.++.....   ...+.+|...     ..+......+.+|||+|.          +.+..+
T Consensus         3 ~~~~KivvvGd~~vGKTsli~~~~~~~f---~~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~----------e~~~~~   69 (182)
T cd04172           3 NVKCKIVVVGDSQCGKTALLHVFAKDCF---PENYVPTVFENYTASFEIDTQRIELSLWDTSGS----------PYYDNV   69 (182)
T ss_pred             cceEEEEEECCCCCCHHHHHHHHHhCCC---CCccCCceeeeeEEEEEECCEEEEEEEEECCCc----------hhhHhh
Confidence            4567899999999999999999998732   2333333221     112122457899999994          122333


Q ss_pred             HHHHHhcccccceEEEEEeCCCCCCcCc--HHHHHHHHhh--CCcEEEEEeccCCCCcHHH-H---------HHHHHHHH
Q 029158           94 VKEYVSTRVSLKRVCLLIDTKWGVKPRD--HELISLMERS--QTKYQVVLTKTDTVFPIDV-A---------RRAMQIEE  159 (198)
Q Consensus        94 ~~~~~~~~~~~d~vi~v~d~~~~~~~~~--~~~~~~~~~~--~~p~iiv~nK~Dl~~~~~~-~---------~~~~~~~~  159 (198)
                      ...++..   +|++++|+|.++..+-..  ..|+..+...  +.|+++|+||+|+...... .         -..++.++
T Consensus        70 ~~~~~~~---ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~  146 (182)
T cd04172          70 RPLSYPD---SDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGAN  146 (182)
T ss_pred             hhhhcCC---CCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHH
Confidence            3344443   899999999987433222  2345555433  6899999999998642110 0         00111222


Q ss_pred             HHHhccCCC-CCcEEeccCCCCC-hHHHHHHHHHh
Q 029158          160 SLKANNSLV-QPVMMVSSKSGAG-IRSLRTVLSKI  192 (198)
Q Consensus       160 ~~~~~~~~~-~~v~~~Sa~~~~g-i~~l~~~i~~~  192 (198)
                      ....   .+ .+++++||++|+| ++++|+.+.+.
T Consensus       147 ~a~~---~~~~~~~E~SAk~~~n~v~~~F~~~~~~  178 (182)
T cd04172         147 MAKQ---IGAATYIECSALQSENSVRDIFHVATLA  178 (182)
T ss_pred             HHHH---cCCCEEEECCcCCCCCCHHHHHHHHHHH
Confidence            2111   13 4899999999998 99999988774

Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight

>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional

Probab=99.88  E-value=2.8e-21  Score=153.84  Aligned_cols=164  Identities=18%  Similarity=0.231  Sum_probs=120.9

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCccc-eeecCCCCceeEEEEEE---------------------------------
Q 029158           19 PDLPEIAFAGRSNVGKSSMLNALTRQWGV-VRTSDKPGLTQTINFFK---------------------------------   64 (198)
Q Consensus        19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~~-~~~~~~~~~t~~~~~~~---------------------------------   64 (198)
                      ....+|+++|...+|||||+.+|.+.+.. ...+-..+.|.+..|..                                 
T Consensus        32 ~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (460)
T PTZ00327         32 QATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGH  111 (460)
T ss_pred             CCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccccc
Confidence            34568999999999999999999975310 01111223332222110                                 


Q ss_pred             ---eCCceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCC-CCcCcHHHHHHHHhhCC-cEEEEE
Q 029158           65 ---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG-VKPRDHELISLMERSQT-KYQVVL  139 (198)
Q Consensus        65 ---~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~-~~~~~~~~~~~~~~~~~-p~iiv~  139 (198)
                         ....+.|+||||+             ..+.+.++.....+|.+++|+|+.++ ...+..+.+..+...+. ++|+|+
T Consensus       112 ~~~~~~~i~~IDtPGH-------------~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~lgi~~iIVvl  178 (460)
T PTZ00327        112 KMTLKRHVSFVDCPGH-------------DILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMKLKHIIILQ  178 (460)
T ss_pred             cccccceEeeeeCCCH-------------HHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHcCCCcEEEEE
Confidence               0236899999996             66777888888889999999999985 56666777776666665 588999


Q ss_pred             eccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEeccCCCCChHHHHHHHHHhhcc
Q 029158          140 TKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIARF  195 (198)
Q Consensus       140 nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~~~gi~~l~~~i~~~~~~  195 (198)
                      ||+|+.+....++..+.+++.+........+++++||++|+|+++|++.|.+.++.
T Consensus       179 NKiDlv~~~~~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp~  234 (460)
T PTZ00327        179 NKIDLVKEAQAQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIPI  234 (460)
T ss_pred             ecccccCHHHHHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCCC
Confidence            99999987776676777777665444457899999999999999999999976543

>PLN03118 Rab family protein; Provisional

Probab=99.88  E-value=5.7e-21  Score=139.13  Aligned_cols=159  Identities=19%  Similarity=0.090  Sum_probs=99.0

Q ss_pred             CCCCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE-E--EEeCCceEEEeCCCCccccchhHHHHHHHHH
Q 029158           17 PAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN-F--FKLGTKLCLVDLPGYGFAYAKEEVKDAWEEL   93 (198)
Q Consensus        17 ~~~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~-~--~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~   93 (198)
                      +.....+|+++|.+|+|||||+++|++.. .....+..+...... +  ......+.+|||||...          +..+
T Consensus        10 ~~~~~~kv~ivG~~~vGKTsli~~l~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~----------~~~~   78 (211)
T PLN03118         10 GYDLSFKILLIGDSGVGKSSLLVSFISSS-VEDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQER----------FRTL   78 (211)
T ss_pred             ccCcceEEEEECcCCCCHHHHHHHHHhCC-CCCcCCCceeEEEEEEEEECCEEEEEEEEECCCchh----------hHHH
Confidence            44456899999999999999999999873 222222221111111 1  11235789999999522          2333


Q ss_pred             HHHHHhcccccceEEEEEeCCCCCCcCcH--HHHHHHHh----hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCC
Q 029158           94 VKEYVSTRVSLKRVCLLIDTKWGVKPRDH--ELISLMER----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSL  167 (198)
Q Consensus        94 ~~~~~~~~~~~d~vi~v~d~~~~~~~~~~--~~~~~~~~----~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~  167 (198)
                      ...++..   +|++++|+|.++.......  .+...+..    .+.|+++|+||+|+........  +........   .
T Consensus        79 ~~~~~~~---~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~--~~~~~~~~~---~  150 (211)
T PLN03118         79 TSSYYRN---AQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSR--EEGMALAKE---H  150 (211)
T ss_pred             HHHHHhc---CCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCH--HHHHHHHHH---c
Confidence            3444443   8999999999863222221  12222322    2578999999999975432211  111111111   1


Q ss_pred             CCCcEEeccCCCCChHHHHHHHHHhhc
Q 029158          168 VQPVMMVSSKSGAGIRSLRTVLSKIAR  194 (198)
Q Consensus       168 ~~~v~~~Sa~~~~gi~~l~~~i~~~~~  194 (198)
                      ..+++++||+++.|+++++++|...+.
T Consensus       151 ~~~~~e~SAk~~~~v~~l~~~l~~~~~  177 (211)
T PLN03118        151 GCLFLECSAKTRENVEQCFEELALKIM  177 (211)
T ss_pred             CCEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            467999999999999999999987653

>cd04113 Rab4 Rab4 subfamily

Probab=99.88  E-value=1.9e-21  Score=135.74  Aligned_cols=153  Identities=15%  Similarity=0.107  Sum_probs=95.2

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeE---EEEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHHHH
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT---INFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV   98 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~---~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~   98 (198)
                      .+|+++|++|+|||||+++|.+........+..+....   ..+......+.+|||||..          .+......++
T Consensus         1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~----------~~~~~~~~~~   70 (161)
T cd04113           1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQE----------RFRSVTRSYY   70 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchH----------HHHHhHHHHh
Confidence            37999999999999999999987421111111111111   1111123568999999952          1223333333


Q ss_pred             hcccccceEEEEEeCCCCCCcCc-HHHHHHHH---hhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEe
Q 029158           99 STRVSLKRVCLLIDTKWGVKPRD-HELISLME---RSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMV  174 (198)
Q Consensus        99 ~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~---~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  174 (198)
                      .   .+|++++|+|+++...... ..++..+.   ..+.|+++|+||+|+.......  .+.........   +.+++++
T Consensus        71 ~---~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~--~~~~~~~~~~~---~~~~~~~  142 (161)
T cd04113          71 R---GAAGALLVYDITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQREVT--FLEASRFAQEN---GLLFLET  142 (161)
T ss_pred             c---CCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhccCC--HHHHHHHHHHc---CCEEEEE
Confidence            3   4899999999987432222 23334333   2368999999999997533211  11122222211   3789999


Q ss_pred             ccCCCCChHHHHHHHHHh
Q 029158          175 SSKSGAGIRSLRTVLSKI  192 (198)
Q Consensus       175 Sa~~~~gi~~l~~~i~~~  192 (198)
                      ||+++.|++++++++.+.
T Consensus       143 Sa~~~~~i~~~~~~~~~~  160 (161)
T cd04113         143 SALTGENVEEAFLKCARS  160 (161)
T ss_pred             ECCCCCCHHHHHHHHHHh
Confidence            999999999999998764

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=99.88  E-value=2.1e-21  Score=135.72  Aligned_cols=151  Identities=15%  Similarity=0.087  Sum_probs=94.8

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeE-----EEEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHH
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT-----INFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE   96 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~-----~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~   96 (198)
                      .+|+++|++|+|||||+++++....   ...+.+++.+     .........+.+|||||...          +......
T Consensus         1 ~ki~~~G~~~~GKTsl~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----------~~~~~~~   67 (164)
T cd04139           1 YKVIVVGAGGVGKSALTLQFMYDEF---VEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQED----------YAAIRDN   67 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCC---ccccCCcchhhEEEEEEECCEEEEEEEEECCChhh----------hhHHHHH
Confidence            3799999999999999999998632   2233333322     11111235689999999522          1233333


Q ss_pred             HHhcccccceEEEEEeCCCCCCcC-cHHHHHHHHh----hCCcEEEEEeccCCCCcHH-HHHHHHHHHHHHHhccCCCCC
Q 029158           97 YVSTRVSLKRVCLLIDTKWGVKPR-DHELISLMER----SQTKYQVVLTKTDTVFPID-VARRAMQIEESLKANNSLVQP  170 (198)
Q Consensus        97 ~~~~~~~~d~vi~v~d~~~~~~~~-~~~~~~~~~~----~~~p~iiv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~  170 (198)
                      ++.   .+|++++++|..+.-.-. -..++..+..    .+.|+++|+||+|+..... .......+.+.      ...+
T Consensus        68 ~~~---~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~------~~~~  138 (164)
T cd04139          68 YHR---SGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQ------WGVP  138 (164)
T ss_pred             Hhh---cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHHH------hCCe
Confidence            333   378999999987521111 1223222222    4799999999999976221 11111122221      1368


Q ss_pred             cEEeccCCCCChHHHHHHHHHhhc
Q 029158          171 VMMVSSKSGAGIRSLRTVLSKIAR  194 (198)
Q Consensus       171 v~~~Sa~~~~gi~~l~~~i~~~~~  194 (198)
                      ++++||++++|++++++++.+.+.
T Consensus       139 ~~~~Sa~~~~gi~~l~~~l~~~~~  162 (164)
T cd04139         139 YVETSAKTRQNVEKAFYDLVREIR  162 (164)
T ss_pred             EEEeeCCCCCCHHHHHHHHHHHHH
Confidence            999999999999999999987654

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=99.88  E-value=1.2e-21  Score=144.53  Aligned_cols=157  Identities=21%  Similarity=0.215  Sum_probs=114.4

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEE----eCCceEEEeCCCCccccchhHHHHHHHHHHHH
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK----LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE   96 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~----~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~   96 (198)
                      ...|.+||.|++|||||+++|...+  ..+.+|+.||...++..    ...++++-|.||+.+..+..      .-+--.
T Consensus       196 iadvGLVG~PNAGKSTLL~als~AK--pkVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~n------kGlG~~  267 (366)
T KOG1489|consen  196 IADVGLVGFPNAGKSTLLNALSRAK--PKVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMN------KGLGYK  267 (366)
T ss_pred             ecccceecCCCCcHHHHHHHhhccC--CcccccceeeeccccceeeccccceeEeccCcccccccccc------CcccHH
Confidence            3578999999999999999999985  68999999997654322    23459999999997765444      333446


Q ss_pred             HHhcccccceEEEEEeCCCCCCcCcHH----HHHHHHhh-----CCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCC
Q 029158           97 YVSTRVSLKRVCLLIDTKWGVKPRDHE----LISLMERS-----QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSL  167 (198)
Q Consensus        97 ~~~~~~~~d~vi~v~d~~~~~~~~~~~----~~~~~~~~-----~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~  167 (198)
                      |+++...++.++||+|.+......-.+    +...++.+     +.|.++|+||+|+++.+  +..++.+.+.++     
T Consensus       268 FLrHiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae--~~~l~~L~~~lq-----  340 (366)
T KOG1489|consen  268 FLRHIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAE--KNLLSSLAKRLQ-----  340 (366)
T ss_pred             HHHHHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHH--HHHHHHHHHHcC-----
Confidence            777777799999999998752222222    22333322     68999999999997433  233455555543     


Q ss_pred             CCCcEEeccCCCCChHHHHHHHHHh
Q 029158          168 VQPVMMVSSKSGAGIRSLRTVLSKI  192 (198)
Q Consensus       168 ~~~v~~~Sa~~~~gi~~l~~~i~~~  192 (198)
                      ...++++||+.++|+.++++.|.+.
T Consensus       341 ~~~V~pvsA~~~egl~~ll~~lr~~  365 (366)
T KOG1489|consen  341 NPHVVPVSAKSGEGLEELLNGLREL  365 (366)
T ss_pred             CCcEEEeeeccccchHHHHHHHhhc
Confidence            2469999999999999999998765

>cd04116 Rab9 Rab9 subfamily

Probab=99.88  E-value=2.6e-21  Score=136.28  Aligned_cols=153  Identities=13%  Similarity=0.045  Sum_probs=94.6

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeE-----EEEEEeCCceEEEeCCCCccccchhHHHHHHHHHH
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT-----INFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELV   94 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~-----~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~   94 (198)
                      ...+|+++|.+|+|||||++++++.+...  ...+..+.+     ..+......+.+|||||.          +.+..+.
T Consensus         4 ~~~ki~vvG~~~~GKTsli~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~----------~~~~~~~   71 (170)
T cd04116           4 SLLKVILLGDGGVGKSSLMNRYVTNKFDT--QLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQ----------ERFRSLR   71 (170)
T ss_pred             eEEEEEEECCCCCCHHHHHHHHHcCCCCc--CcCCceeeEEEEEEEEECCeEEEEEEEeCCCh----------HHHHHhH
Confidence            45789999999999999999999874211  111111111     112222356889999994          2223344


Q ss_pred             HHHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHh-------hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccC
Q 029158           95 KEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER-------SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNS  166 (198)
Q Consensus        95 ~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~-------~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~  166 (198)
                      ..++.   .+|++++++|..+..+... ..+...+..       .+.|+++|+||+|+......   .+.+++.....  
T Consensus        72 ~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~---~~~~~~~~~~~--  143 (170)
T cd04116          72 TPFYR---GSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQVS---TEEAQAWCREN--  143 (170)
T ss_pred             HHHhc---CCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccccC---HHHHHHHHHHC--
Confidence            44444   3899999999876322222 223332221       25799999999999632111   12222222222  


Q ss_pred             CCCCcEEeccCCCCChHHHHHHHHHh
Q 029158          167 LVQPVMMVSSKSGAGIRSLRTVLSKI  192 (198)
Q Consensus       167 ~~~~v~~~Sa~~~~gi~~l~~~i~~~  192 (198)
                      ...+++++||++|.|++++++++.+.
T Consensus       144 ~~~~~~e~Sa~~~~~v~~~~~~~~~~  169 (170)
T cd04116         144 GDYPYFETSAKDATNVAAAFEEAVRR  169 (170)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHhh
Confidence            13579999999999999999998764

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.88  E-value=4.2e-21  Score=132.33  Aligned_cols=154  Identities=18%  Similarity=0.181  Sum_probs=110.6

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE-------EEEeCCceEEEeCCCCccccchhHHHHHHHHH
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN-------FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEEL   93 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~-------~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~   93 (198)
                      ..+|+++|..++||||||++++...   .-.+|.. |..+.       +.....++++|||+|          ++.+..+
T Consensus        22 ~~KlVflGdqsVGKTslItRf~yd~---fd~~YqA-TIGiDFlskt~~l~d~~vrLQlWDTAG----------QERFrsl   87 (221)
T KOG0094|consen   22 KYKLVFLGDQSVGKTSLITRFMYDK---FDNTYQA-TIGIDFLSKTMYLEDRTVRLQLWDTAG----------QERFRSL   87 (221)
T ss_pred             EEEEEEEccCccchHHHHHHHHHhh---hcccccc-eeeeEEEEEEEEEcCcEEEEEEEeccc----------HHHHhhh
Confidence            3789999999999999999999873   3334433 32222       222357899999999          4777888


Q ss_pred             HHHHHhcccccceEEEEEeCCCCC-CcCcHHHHHHHHhh----CCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCC
Q 029158           94 VKEYVSTRVSLKRVCLLIDTKWGV-KPRDHELISLMERS----QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLV  168 (198)
Q Consensus        94 ~~~~~~~~~~~d~vi~v~d~~~~~-~~~~~~~~~~~~~~----~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  168 (198)
                      ...|++.   +.++++|+|.++.- -+...+|++.+...    ++-+++|+||.||.++.+.........  .   ...+
T Consensus        88 ipsY~Rd---s~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~k--A---kel~  159 (221)
T KOG0094|consen   88 IPSYIRD---SSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERK--A---KELN  159 (221)
T ss_pred             hhhhccC---CeEEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHHHHHH--H---HHhC
Confidence            8888887   78899999987632 23345667666544    256778999999999865432222211  1   1124


Q ss_pred             CCcEEeccCCCCChHHHHHHHHHhhccc
Q 029158          169 QPVMMVSSKSGAGIRSLRTVLSKIARFA  196 (198)
Q Consensus       169 ~~v~~~Sa~~~~gi~~l~~~i~~~~~~~  196 (198)
                      .-++++||+.|+|+.++|..|...+...
T Consensus       160 a~f~etsak~g~NVk~lFrrIaa~l~~~  187 (221)
T KOG0094|consen  160 AEFIETSAKAGENVKQLFRRIAAALPGM  187 (221)
T ss_pred             cEEEEecccCCCCHHHHHHHHHHhccCc
Confidence            6799999999999999999988776543

>cd04132 Rho4_like Rho4-like subfamily

Probab=99.88  E-value=1.4e-21  Score=139.76  Aligned_cols=154  Identities=15%  Similarity=0.077  Sum_probs=95.1

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeE-E--EEEE---eCCceEEEeCCCCccccchhHHHHHHHHHHH
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT-I--NFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVK   95 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~-~--~~~~---~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~   95 (198)
                      .+|+++|.+|+|||||++++++...   ...+.++... .  ....   ....+.+|||||..          .+..+..
T Consensus         1 ~ki~vvG~~~vGKTsli~~l~~~~~---~~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~----------~~~~~~~   67 (187)
T cd04132           1 KKIVVVGDGGCGKTCLLIVYSQGKF---PEEYVPTVFENYVTNIQGPNGKIIELALWDTAGQE----------EYDRLRP   67 (187)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcC---CCCCCCeeeeeeEEEEEecCCcEEEEEEEECCCch----------hHHHHHH
Confidence            4799999999999999999998732   2223222211 1  1111   12468999999952          1122222


Q ss_pred             HHHhcccccceEEEEEeCCCCCCcCcH--HHHHHHHh--hCCcEEEEEeccCCCCcHHHHH--HHHHHHHHHHhccCCCC
Q 029158           96 EYVSTRVSLKRVCLLIDTKWGVKPRDH--ELISLMER--SQTKYQVVLTKTDTVFPIDVAR--RAMQIEESLKANNSLVQ  169 (198)
Q Consensus        96 ~~~~~~~~~d~vi~v~d~~~~~~~~~~--~~~~~~~~--~~~p~iiv~nK~Dl~~~~~~~~--~~~~~~~~~~~~~~~~~  169 (198)
                      .++   ..+|++++|+|.++..+....  .++..+..  .+.|+++|+||+|+........  .....++.....   +.
T Consensus        68 ~~~---~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~---~~  141 (187)
T cd04132          68 LSY---PDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQ---GA  141 (187)
T ss_pred             HhC---CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHc---CC
Confidence            333   348999999999863222221  23333332  2689999999999975331100  011222222111   23


Q ss_pred             -CcEEeccCCCCChHHHHHHHHHhhc
Q 029158          170 -PVMMVSSKSGAGIRSLRTVLSKIAR  194 (198)
Q Consensus       170 -~v~~~Sa~~~~gi~~l~~~i~~~~~  194 (198)
                       +++++||++|.|++++++.+.+.+.
T Consensus       142 ~~~~e~Sa~~~~~v~~~f~~l~~~~~  167 (187)
T cd04132         142 FAYLECSAKTMENVEEVFDTAIEEAL  167 (187)
T ss_pred             cEEEEccCCCCCCHHHHHHHHHHHHH
Confidence             7899999999999999999987654

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd01862 Rab7 Rab7 subfamily

Probab=99.88  E-value=4e-21  Score=135.42  Aligned_cols=156  Identities=14%  Similarity=0.104  Sum_probs=93.5

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCce---eEEEEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHHHH
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT---QTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV   98 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t---~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~   98 (198)
                      .+|+++|++|+|||||++++.+...........+.+   ...........+.+|||||..          .+..+...++
T Consensus         1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~----------~~~~~~~~~~   70 (172)
T cd01862           1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQE----------RFQSLGVAFY   70 (172)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChH----------HHHhHHHHHh
Confidence            379999999999999999999873111111111111   111121223467899999952          1223333343


Q ss_pred             hcccccceEEEEEeCCCCCCcCc-HHHHHHH-Hh------hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCC
Q 029158           99 STRVSLKRVCLLIDTKWGVKPRD-HELISLM-ER------SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQP  170 (198)
Q Consensus        99 ~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~-~~------~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (198)
                         +.+|++++++|+.+...... ..+.+.+ ..      .+.|+++|+||+|+..+....  .+.++.....  ....+
T Consensus        71 ---~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~--~~~~~~~~~~--~~~~~  143 (172)
T cd01862          71 ---RGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVS--TKKAQQWCQS--NGNIP  143 (172)
T ss_pred             ---cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccC--HHHHHHHHHH--cCCce
Confidence               33899999999986322111 1222222 11      168999999999998422110  1112222211  11368


Q ss_pred             cEEeccCCCCChHHHHHHHHHhhc
Q 029158          171 VMMVSSKSGAGIRSLRTVLSKIAR  194 (198)
Q Consensus       171 v~~~Sa~~~~gi~~l~~~i~~~~~  194 (198)
                      ++++||++|.|+++++++|.+.+.
T Consensus       144 ~~~~Sa~~~~gv~~l~~~i~~~~~  167 (172)
T cd01862         144 YFETSAKEAINVEQAFETIARKAL  167 (172)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            999999999999999999987653

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>cd01874 Cdc42 Cdc42 subfamily

Probab=99.87  E-value=2.5e-21  Score=137.03  Aligned_cols=153  Identities=12%  Similarity=0.020  Sum_probs=96.8

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeE-----EEEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHH
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT-----INFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE   96 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~-----~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~   96 (198)
                      .+|+++|.+|+|||||+.++.....   ...+.+|..+     .........+.+|||+|...          +..+...
T Consensus         2 ~ki~vvG~~~vGKTsl~~~~~~~~f---~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~----------~~~~~~~   68 (175)
T cd01874           2 IKCVVVGDGAVGKTCLLISYTTNKF---PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED----------YDRLRPL   68 (175)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCC---CCCCCCceeeeeEEEEEECCEEEEEEEEECCCccc----------hhhhhhh
Confidence            5799999999999999999998732   2334444322     11111235788999999632          1222233


Q ss_pred             HHhcccccceEEEEEeCCCCCCcCcH--HHHHHHHhh--CCcEEEEEeccCCCCcHHHHHHH----------HHHHHHHH
Q 029158           97 YVSTRVSLKRVCLLIDTKWGVKPRDH--ELISLMERS--QTKYQVVLTKTDTVFPIDVARRA----------MQIEESLK  162 (198)
Q Consensus        97 ~~~~~~~~d~vi~v~d~~~~~~~~~~--~~~~~~~~~--~~p~iiv~nK~Dl~~~~~~~~~~----------~~~~~~~~  162 (198)
                      ++.   .+|++++|+|.++..+-...  .|+..+...  +.|+++|+||+|+....+..+..          +..++...
T Consensus        69 ~~~---~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~  145 (175)
T cd01874          69 SYP---QTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLAR  145 (175)
T ss_pred             hcc---cCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHH
Confidence            333   38999999999864322222  344445432  68999999999996543221111          11111111


Q ss_pred             hccCCCCCcEEeccCCCCChHHHHHHHHHh
Q 029158          163 ANNSLVQPVMMVSSKSGAGIRSLRTVLSKI  192 (198)
Q Consensus       163 ~~~~~~~~v~~~Sa~~~~gi~~l~~~i~~~  192 (198)
                      .  ....+++++||++|.|++++++.+...
T Consensus       146 ~--~~~~~~~e~SA~tg~~v~~~f~~~~~~  173 (175)
T cd01874         146 D--LKAVKYVECSALTQKGLKNVFDEAILA  173 (175)
T ss_pred             H--hCCcEEEEecCCCCCCHHHHHHHHHHH
Confidence            1  113679999999999999999988764

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi

>PLN03110 Rab GTPase; Provisional

Probab=99.87  E-value=8.3e-21  Score=138.65  Aligned_cols=155  Identities=16%  Similarity=0.123  Sum_probs=99.7

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEE-----EEEEeCCceEEEeCCCCccccchhHHHHHHHHH
Q 029158           19 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI-----NFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEEL   93 (198)
Q Consensus        19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~-----~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~   93 (198)
                      +...+|+++|++|+|||||+++|.+.....  ...+....+.     .+......+.+|||||.          +.+..+
T Consensus        10 ~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~--~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~----------~~~~~~   77 (216)
T PLN03110         10 DYLFKIVLIGDSGVGKSNILSRFTRNEFCL--ESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQ----------ERYRAI   77 (216)
T ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCCCC--CCCCceeEEEEEEEEEECCEEEEEEEEECCCc----------HHHHHH
Confidence            345799999999999999999999874211  1111111121     11112357899999994          223344


Q ss_pred             HHHHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHh---hCCcEEEEEeccCCCCcHHHH-HHHHHHHHHHHhccCCC
Q 029158           94 VKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDVA-RRAMQIEESLKANNSLV  168 (198)
Q Consensus        94 ~~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~---~~~p~iiv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~  168 (198)
                      ...++..   ++++++|+|.++...... ..++..+..   .+.|+++|+||+|+....... +....+..      ...
T Consensus        78 ~~~~~~~---~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~------~~~  148 (216)
T PLN03110         78 TSAYYRG---AVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQALAE------KEG  148 (216)
T ss_pred             HHHHhCC---CCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcccccCCCHHHHHHHHH------HcC
Confidence            4444443   899999999976322222 234444443   368999999999986543221 11122221      125


Q ss_pred             CCcEEeccCCCCChHHHHHHHHHhhc
Q 029158          169 QPVMMVSSKSGAGIRSLRTVLSKIAR  194 (198)
Q Consensus       169 ~~v~~~Sa~~~~gi~~l~~~i~~~~~  194 (198)
                      .+++++||++|+|++++++++...+.
T Consensus       149 ~~~~e~SA~~g~~v~~lf~~l~~~i~  174 (216)
T PLN03110        149 LSFLETSALEATNVEKAFQTILLEIY  174 (216)
T ss_pred             CEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            78999999999999999999987653

>cd04109 Rab28 Rab28 subfamily

Probab=99.87  E-value=6.7e-21  Score=139.14  Aligned_cols=153  Identities=18%  Similarity=0.134  Sum_probs=97.0

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCce-eEEE---EEE---eCCceEEEeCCCCccccchhHHHHHHHHHH
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT-QTIN---FFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELV   94 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t-~~~~---~~~---~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~   94 (198)
                      .+|+++|.+|+|||||+++|.+..   ....+.+|. .+..   +..   ....+.+|||||..          .+..+.
T Consensus         1 ~Ki~ivG~~~vGKSsLi~~l~~~~---~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~----------~~~~l~   67 (215)
T cd04109           1 FKIVVLGDGAVGKTSLCRRFAKEG---FGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQS----------IGGKML   67 (215)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCC---CCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcH----------HHHHHH
Confidence            379999999999999999999873   222333222 2221   111   13568899999942          223444


Q ss_pred             HHHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHhh------CCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCC
Q 029158           95 KEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS------QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSL  167 (198)
Q Consensus        95 ~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~~------~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~  167 (198)
                      ..++.   .+|++++|+|.++..+... .+++..+...      +.|+++|+||+|+.......  .+..++....   .
T Consensus        68 ~~~~~---~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~--~~~~~~~~~~---~  139 (215)
T cd04109          68 DKYIY---GAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVK--DDKHARFAQA---N  139 (215)
T ss_pred             HHHhh---cCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccC--HHHHHHHHHH---c
Confidence            44544   3899999999986322222 2344444432      35799999999997533211  1111111111   1


Q ss_pred             CCCcEEeccCCCCChHHHHHHHHHhhcc
Q 029158          168 VQPVMMVSSKSGAGIRSLRTVLSKIARF  195 (198)
Q Consensus       168 ~~~v~~~Sa~~~~gi~~l~~~i~~~~~~  195 (198)
                      +.+++++||++|+|++++++++.+.+..
T Consensus       140 ~~~~~~iSAktg~gv~~lf~~l~~~l~~  167 (215)
T cd04109         140 GMESCLVSAKTGDRVNLLFQQLAAELLG  167 (215)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            3679999999999999999999887643

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>cd04117 Rab15 Rab15 subfamily

Probab=99.87  E-value=8.4e-21  Score=132.62  Aligned_cols=147  Identities=16%  Similarity=0.175  Sum_probs=93.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeE--E-----EEEEeCCceEEEeCCCCccccchhHHHHHHHHHHH
Q 029158           23 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT--I-----NFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVK   95 (198)
Q Consensus        23 ~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~--~-----~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~   95 (198)
                      +|+++|++|+|||||++++.+....   ..+ .+|..  .     .+......+.+|||||..          .+.....
T Consensus         2 ki~vvG~~~~GKTsli~~~~~~~~~---~~~-~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~----------~~~~~~~   67 (161)
T cd04117           2 RLLLIGDSGVGKTCLLCRFTDNEFH---SSH-ISTIGVDFKMKTIEVDGIKVRIQIWDTAGQE----------RYQTITK   67 (161)
T ss_pred             EEEEECcCCCCHHHHHHHHhcCCCC---CCC-CCceeeEEEEEEEEECCEEEEEEEEeCCCcH----------hHHhhHH
Confidence            6999999999999999999987421   111 12221  1     111123568899999952          1233333


Q ss_pred             HHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHh---hCCcEEEEEeccCCCCcHHHH-HHHHHHHHHHHhccCCCCC
Q 029158           96 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDVA-RRAMQIEESLKANNSLVQP  170 (198)
Q Consensus        96 ~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~---~~~p~iiv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~  170 (198)
                      .++.   .+|++++|+|.++.-+... ..++..+..   .+.|+++|+||+|+....... +....+.+.    .  ..+
T Consensus        68 ~~~~---~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~----~--~~~  138 (161)
T cd04117          68 QYYR---RAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGDEQGNKLAKE----Y--GMD  138 (161)
T ss_pred             HHhc---CCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHH----c--CCE
Confidence            4443   4899999999876322111 233444333   258999999999997543221 111222211    1  368


Q ss_pred             cEEeccCCCCChHHHHHHHHHh
Q 029158          171 VMMVSSKSGAGIRSLRTVLSKI  192 (198)
Q Consensus       171 v~~~Sa~~~~gi~~l~~~i~~~  192 (198)
                      ++++||+++.|+++++++|.+.
T Consensus       139 ~~e~Sa~~~~~v~~~f~~l~~~  160 (161)
T cd04117         139 FFETSACTNSNIKESFTRLTEL  160 (161)
T ss_pred             EEEEeCCCCCCHHHHHHHHHhh
Confidence            9999999999999999999764

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>cd04118 Rab24 Rab24 subfamily

Probab=99.87  E-value=2.6e-21  Score=139.10  Aligned_cols=154  Identities=14%  Similarity=0.129  Sum_probs=96.9

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeE---EEEEEe---CCceEEEeCCCCccccchhHHHHHHHHHHH
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT---INFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVK   95 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~---~~~~~~---~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~   95 (198)
                      .+|+++|.+|+|||||++++++... . ...+.++...   ......   ...+.+|||||...          +..+..
T Consensus         1 ~ki~vvG~~~vGKSsLi~~~~~~~~-~-~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~----------~~~~~~   68 (193)
T cd04118           1 VKVVMLGKESVGKTSLVERYVHHRF-L-VGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSER----------YEAMSR   68 (193)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCc-C-CcCcccceeeEEEEEEEEECCEEEEEEEEECCCchh----------hhhhhH
Confidence            3799999999999999999998742 1 1223333321   111111   24577999999521          122333


Q ss_pred             HHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHhh--CCcEEEEEeccCCCCcHHH-HH-HHHHHHHHHHhccCCCCC
Q 029158           96 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS--QTKYQVVLTKTDTVFPIDV-AR-RAMQIEESLKANNSLVQP  170 (198)
Q Consensus        96 ~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~~--~~p~iiv~nK~Dl~~~~~~-~~-~~~~~~~~~~~~~~~~~~  170 (198)
                      .++.   .+|++++|+|.++..+... ..++..+...  +.|+++|+||+|+...... .. ..+.+++....   ...+
T Consensus        69 ~~~~---~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~---~~~~  142 (193)
T cd04118          69 IYYR---GAKAAIVCYDLTDSSSFERAKFWVKELQNLEEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADE---IKAQ  142 (193)
T ss_pred             hhcC---CCCEEEEEEECCCHHHHHHHHHHHHHHHhcCCCCCEEEEEEcccccccccccCccCHHHHHHHHHH---cCCe
Confidence            3333   3899999999976322111 2455555543  5899999999998653211 01 01222222221   2467


Q ss_pred             cEEeccCCCCChHHHHHHHHHhh
Q 029158          171 VMMVSSKSGAGIRSLRTVLSKIA  193 (198)
Q Consensus       171 v~~~Sa~~~~gi~~l~~~i~~~~  193 (198)
                      ++++||++++|+++++++|.+.+
T Consensus       143 ~~~~Sa~~~~gv~~l~~~i~~~~  165 (193)
T cd04118         143 HFETSSKTGQNVDELFQKVAEDF  165 (193)
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHH
Confidence            99999999999999999998765

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita

>COG1084 Predicted GTPase [General function prediction only]

Probab=99.87  E-value=1.5e-20  Score=139.72  Aligned_cols=168  Identities=23%  Similarity=0.273  Sum_probs=118.5

Q ss_pred             CcCCCC--CCCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEe---CCceEEEeCCCCccccchhHH
Q 029158           12 VSSSFP--APDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEV   86 (198)
Q Consensus        12 ~~~~~~--~~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~~~iiDtpG~~~~~~~~~~   86 (198)
                      .+..+|  ++..+.|++.|+||+|||||++.+.+.+  .++.+||.||+.+.+.+.   ..+++++||||+-+..-.+..
T Consensus       157 ~l~~LP~Idp~~pTivVaG~PNVGKSSlv~~lT~Ak--pEvA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN  234 (346)
T COG1084         157 HLKKLPAIDPDLPTIVVAGYPNVGKSSLVRKLTTAK--PEVAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERN  234 (346)
T ss_pred             HHhcCCCCCCCCCeEEEecCCCCcHHHHHHHHhcCC--CccCCCCccccceeEeeeecCCceEEEecCCcccCCChHHhc
Confidence            344455  3578999999999999999999999986  889999999999886665   458999999998775432221


Q ss_pred             HHHHHHHHHHHHhcc-cccceEEEEEeCCC--CCCcC-cHHHHHHHHh-hCCcEEEEEeccCCCCcHHHHHHHHHHHHHH
Q 029158           87 KDAWEELVKEYVSTR-VSLKRVCLLIDTKW--GVKPR-DHELISLMER-SQTKYQVVLTKTDTVFPIDVARRAMQIEESL  161 (198)
Q Consensus        87 ~~~~~~~~~~~~~~~-~~~d~vi~v~d~~~--~~~~~-~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~  161 (198)
                           ....+.+.+. ...++|+|++|++.  |.+-. ...++..+.. .+.|+++|+||+|..+.+..++....+....
T Consensus       235 -----~IE~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~~p~v~V~nK~D~~~~e~~~~~~~~~~~~~  309 (346)
T COG1084         235 -----EIERQAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFKAPIVVVINKIDIADEEKLEEIEASVLEEG  309 (346)
T ss_pred             -----HHHHHHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcCCCeEEEEecccccchhHHHHHHHHHHhhc
Confidence                 1122222222 23678999999987  33322 2344555554 3689999999999998777666555544321


Q ss_pred             HhccCCCCCcEEeccCCCCChHHHHHHHHHh
Q 029158          162 KANNSLVQPVMMVSSKSGAGIRSLRTVLSKI  192 (198)
Q Consensus       162 ~~~~~~~~~v~~~Sa~~~~gi~~l~~~i~~~  192 (198)
                            ......+++..+.+++.+.+.+...
T Consensus       310 ------~~~~~~~~~~~~~~~d~~~~~v~~~  334 (346)
T COG1084         310 ------GEEPLKISATKGCGLDKLREEVRKT  334 (346)
T ss_pred             ------cccccceeeeehhhHHHHHHHHHHH
Confidence                  2335678888889989888776655

>cd01875 RhoG RhoG subfamily

Probab=99.87  E-value=3.4e-21  Score=138.19  Aligned_cols=154  Identities=13%  Similarity=0.020  Sum_probs=96.8

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEE-----EEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHH
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI-----NFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE   96 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~-----~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~   96 (198)
                      .+|+++|..|+|||||+.++.....   ...+.+|..+.     .+......+.+|||+|.          +.+..+...
T Consensus         4 ~ki~~vG~~~vGKTsli~~~~~~~f---~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~----------e~~~~l~~~   70 (191)
T cd01875           4 IKCVVVGDGAVGKTCLLICYTTNAF---PKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQ----------EEYDRLRTL   70 (191)
T ss_pred             EEEEEECCCCCCHHHHHHHHHhCCC---CcCCCCceEeeeEEEEEECCEEEEEEEEECCCc----------hhhhhhhhh
Confidence            6899999999999999999998732   22333332221     11112356899999995          222334444


Q ss_pred             HHhcccccceEEEEEeCCCCCCcCcH--HHHHHHHh--hCCcEEEEEeccCCCCcHHH-HHHH---------HHHHHHHH
Q 029158           97 YVSTRVSLKRVCLLIDTKWGVKPRDH--ELISLMER--SQTKYQVVLTKTDTVFPIDV-ARRA---------MQIEESLK  162 (198)
Q Consensus        97 ~~~~~~~~d~vi~v~d~~~~~~~~~~--~~~~~~~~--~~~p~iiv~nK~Dl~~~~~~-~~~~---------~~~~~~~~  162 (198)
                      |+..   +|++++|+|.++..+-...  .|...+..  .+.|+++|+||+|+...... +...         ++.++...
T Consensus        71 ~~~~---a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~  147 (191)
T cd01875          71 SYPQ---TNVFIICFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAK  147 (191)
T ss_pred             hccC---CCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHH
Confidence            4443   8999999999763222222  23443432  36899999999999654321 1100         11111111


Q ss_pred             hccCCCCCcEEeccCCCCChHHHHHHHHHhh
Q 029158          163 ANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA  193 (198)
Q Consensus       163 ~~~~~~~~v~~~Sa~~~~gi~~l~~~i~~~~  193 (198)
                      ..  ...+++++||++|+|++++++++.+.+
T Consensus       148 ~~--~~~~~~e~SAk~g~~v~e~f~~l~~~~  176 (191)
T cd01875         148 QI--HAVKYLECSALNQDGVKEVFAEAVRAV  176 (191)
T ss_pred             Hc--CCcEEEEeCCCCCCCHHHHHHHHHHHH
Confidence            11  125799999999999999999998755

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin

>CHL00071 tufA elongation factor Tu

Probab=99.87  E-value=8.5e-21  Score=150.48  Aligned_cols=162  Identities=19%  Similarity=0.227  Sum_probs=117.1

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCcc--------------ceeecCCCCceeEEE---EEEeCCceEEEeCCCCcccc
Q 029158           19 PDLPEIAFAGRSNVGKSSMLNALTRQWG--------------VVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAY   81 (198)
Q Consensus        19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~--------------~~~~~~~~~~t~~~~---~~~~~~~~~iiDtpG~~~~~   81 (198)
                      ....+|+++|.+++|||||+++|++...              ........++|.+..   +...+.++.++||||+    
T Consensus        10 ~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh----   85 (409)
T CHL00071         10 KPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGH----   85 (409)
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCCh----
Confidence            3457899999999999999999997410              011122245665543   2223567999999997    


Q ss_pred             chhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCc-EEEEEeccCCCCcHHH-HHHHHHHHH
Q 029158           82 AKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKTDTVFPIDV-ARRAMQIEE  159 (198)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~~~~-~~~~~~~~~  159 (198)
                               ..+....+.....+|++++|+|+..++...+.+++..+...++| +|+++||+|+.+..+. +...+++.+
T Consensus        86 ---------~~~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~  156 (409)
T CHL00071         86 ---------ADYVKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQVGVPNIVVFLNKEDQVDDEELLELVELEVRE  156 (409)
T ss_pred             ---------HHHHHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEccCCCCHHHHHHHHHHHHHH
Confidence                     45566666667779999999999998888888888888888898 7789999999875543 334456666


Q ss_pred             HHHhccC--CCCCcEEeccCCCCC------------------hHHHHHHHHHhh
Q 029158          160 SLKANNS--LVQPVMMVSSKSGAG------------------IRSLRTVLSKIA  193 (198)
Q Consensus       160 ~~~~~~~--~~~~v~~~Sa~~~~g------------------i~~l~~~i~~~~  193 (198)
                      .+.....  ...|++++||.+|++                  +..|++.|.+..
T Consensus       157 ~l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~~~~~~~~~w~~~~~~ll~~l~~~~  210 (409)
T CHL00071        157 LLSKYDFPGDDIPIVSGSALLALEALTENPKIKRGENKWVDKIYNLMDAVDSYI  210 (409)
T ss_pred             HHHHhCCCCCcceEEEcchhhcccccccCccccccCCchhhhHHHHHHHHHhhC
Confidence            6655332  237899999998863                  466777776644

>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=99.87  E-value=6.2e-21  Score=140.24  Aligned_cols=175  Identities=22%  Similarity=0.243  Sum_probs=122.0

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE---EEEeCCceEEEeCCCCccccchhHHHHHHHHHHH
Q 029158           19 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVK   95 (198)
Q Consensus        19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~---~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~   95 (198)
                      .....|+++|.||+|||||.|.+.+. ++..++....||+--.   +.....++.|+||||+...... ...........
T Consensus        70 ~k~L~vavIG~PNvGKStLtN~mig~-kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~-r~~~l~~s~lq  147 (379)
T KOG1423|consen   70 QKSLYVAVIGAPNVGKSTLTNQMIGQ-KVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMH-RRHHLMMSVLQ  147 (379)
T ss_pred             ceEEEEEEEcCCCcchhhhhhHhhCC-ccccccccccceeeeeeEEEecCceEEEEecCCcccccchh-hhHHHHHHhhh
Confidence            45678999999999999999999998 7777888777776533   2233689999999998553111 11112233444


Q ss_pred             HHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhh-CCcEEEEEeccCCCCcHH-------------HHHHHHHHHHHH
Q 029158           96 EYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERS-QTKYQVVLTKTDTVFPID-------------VARRAMQIEESL  161 (198)
Q Consensus        96 ~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~-~~p~iiv~nK~Dl~~~~~-------------~~~~~~~~~~~~  161 (198)
                      .+......||.+++++|++..-....-.++..+... ..|-++|+||.|......             +....-.+++.+
T Consensus       148 ~~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~ys~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~~~f  227 (379)
T KOG1423|consen  148 NPRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEYSKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQEKF  227 (379)
T ss_pred             CHHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHHhcCCceeeccchhcchhhhHHhhhHHhccccccchhhhhHHHHh
Confidence            566666779999999999863334444556666654 699999999999876532             122233444444


Q ss_pred             Hhcc-----------CCCCCcEEeccCCCCChHHHHHHHHHhhcc
Q 029158          162 KANN-----------SLVQPVMMVSSKSGAGIRSLRTVLSKIARF  195 (198)
Q Consensus       162 ~~~~-----------~~~~~v~~~Sa~~~~gi~~l~~~i~~~~~~  195 (198)
                      ....           .....+|++||..|+|++++.+++...++.
T Consensus       228 ~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~  272 (379)
T KOG1423|consen  228 TDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPP  272 (379)
T ss_pred             ccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCC
Confidence            4322           112348999999999999999999987764

>cd04126 Rab20 Rab20 subfamily

Probab=99.87  E-value=3.7e-21  Score=140.23  Aligned_cols=154  Identities=19%  Similarity=0.159  Sum_probs=94.6

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEE---EeCCceEEEeCCCCccccchhHHHHHHHHHHHHHH
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF---KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV   98 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~---~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~   98 (198)
                      .+|+++|.+|+|||||+++++... ..   .+. +|....+.   ....++.+|||||...          +..+...++
T Consensus         1 ~KIvivG~~~vGKTSLi~r~~~~~-f~---~~~-~Tig~~~~~~~~~~~~l~iwDt~G~e~----------~~~l~~~~~   65 (220)
T cd04126           1 LKVVLLGDMNVGKTSLLHRYMERR-FK---DTV-STVGGAFYLKQWGPYNISIWDTAGREQ----------FHGLGSMYC   65 (220)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCC-CC---CCC-CccceEEEEEEeeEEEEEEEeCCCccc----------chhhHHHHh
Confidence            379999999999999999999874 22   122 22222211   1246789999999622          133344444


Q ss_pred             hcccccceEEEEEeCCCCCCcCcH--HHHHHHHh--hCCcEEEEEeccCCCCcHH-----------------HHHHHHHH
Q 029158           99 STRVSLKRVCLLIDTKWGVKPRDH--ELISLMER--SQTKYQVVLTKTDTVFPID-----------------VARRAMQI  157 (198)
Q Consensus        99 ~~~~~~d~vi~v~d~~~~~~~~~~--~~~~~~~~--~~~p~iiv~nK~Dl~~~~~-----------------~~~~~~~~  157 (198)
                      .   .+|++++|+|.++..+....  ++....+.  .+.|+|+|+||+|+.....                 ..-..+..
T Consensus        66 ~---~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~  142 (220)
T cd04126          66 R---GAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDA  142 (220)
T ss_pred             c---cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHH
Confidence            4   38999999999873222222  22222222  3589999999999975110                 00001111


Q ss_pred             HHHHHhcc-----------CCCCCcEEeccCCCCChHHHHHHHHHhh
Q 029158          158 EESLKANN-----------SLVQPVMMVSSKSGAGIRSLRTVLSKIA  193 (198)
Q Consensus       158 ~~~~~~~~-----------~~~~~v~~~Sa~~~~gi~~l~~~i~~~~  193 (198)
                      +.......           ....+++++||++|.|+++++..+.+.+
T Consensus       143 ~~~a~~~~~~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~  189 (220)
T cd04126         143 KAFYKRINKYKMLDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLV  189 (220)
T ss_pred             HHHHHHhCccccccccccccccceEEEeeCCCCCCHHHHHHHHHHHH
Confidence            11111111           1126799999999999999999988654

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=99.87  E-value=9.4e-21  Score=136.49  Aligned_cols=165  Identities=22%  Similarity=0.201  Sum_probs=107.4

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCccceeecC---CCCceeEEEEEEe--CCceEEEeCCCCccccchhHHHHHHHHHHHH
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSD---KPGLTQTINFFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE   96 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~---~~~~t~~~~~~~~--~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~   96 (198)
                      .+|+++|.+|+|||||+|+|++.........   ...+|.....+..  ..++.+|||||+++.....      ..+...
T Consensus         2 ~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~~~~------~~~l~~   75 (197)
T cd04104           2 LNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGSTAFPP------DDYLEE   75 (197)
T ss_pred             eEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcccCCH------HHHHHH
Confidence            5799999999999999999998531111111   1112322222221  3579999999987542211      122221


Q ss_pred             HHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHH---------HHHHHHHHHHHHH----h
Q 029158           97 YVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPID---------VARRAMQIEESLK----A  163 (198)
Q Consensus        97 ~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~---------~~~~~~~~~~~~~----~  163 (198)
                      .  ....+|+++++.+.  ++...+..+++.+...+.|+++|+||+|+..+..         .++..+.+++.+.    .
T Consensus        76 ~--~~~~~d~~l~v~~~--~~~~~d~~~~~~l~~~~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~  151 (197)
T cd04104          76 M--KFSEYDFFIIISST--RFSSNDVKLAKAIQCMGKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQE  151 (197)
T ss_pred             h--CccCcCEEEEEeCC--CCCHHHHHHHHHHHHhCCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHH
Confidence            1  12347888887543  4677888888888888899999999999964322         2233444444333    3


Q ss_pred             ccCCCCCcEEeccC--CCCChHHHHHHHHHhhccc
Q 029158          164 NNSLVQPVMMVSSK--SGAGIRSLRTVLSKIARFA  196 (198)
Q Consensus       164 ~~~~~~~v~~~Sa~--~~~gi~~l~~~i~~~~~~~  196 (198)
                      ......++|.+|+.  .++|+..|.+.|...+...
T Consensus       152 ~~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~  186 (197)
T cd04104         152 AGVSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAH  186 (197)
T ss_pred             cCCCCCCEEEEeCCChhhcChHHHHHHHHHHhhHH
Confidence            33345689999998  6899999999999887643

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>cd04147 Ras_dva Ras-dva subfamily

Probab=99.87  E-value=4.7e-21  Score=138.28  Aligned_cols=153  Identities=12%  Similarity=0.094  Sum_probs=94.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEE---EEE--EeCCceEEEeCCCCccccchhHHHHHHHHHHHHH
Q 029158           23 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---NFF--KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY   97 (198)
Q Consensus        23 ~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~---~~~--~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~   97 (198)
                      +|+++|.+|+|||||++++++...   ...+..++.+.   .+.  .....+.+|||||...          +..+...+
T Consensus         1 kv~vvG~~~vGKTsll~~~~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~----------~~~~~~~~   67 (198)
T cd04147           1 RLVFMGAAGVGKTALIQRFLYDTF---EPKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYS----------FPAMRKLS   67 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCC---CccCCCchhhheeEEEEECCEEEEEEEEECCCchh----------hhHHHHHH
Confidence            589999999999999999998742   22233333221   111  1225789999999522          12222233


Q ss_pred             HhcccccceEEEEEeCCCCCCcCc-HHHHHHHHh----hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcE
Q 029158           98 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVM  172 (198)
Q Consensus        98 ~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~----~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~  172 (198)
                      +.   .+|++++|+|+++...... ..++..+..    .+.|+++|+||+|+......... ....+....  ....+++
T Consensus        68 ~~---~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~-~~~~~~~~~--~~~~~~~  141 (198)
T cd04147          68 IQ---NSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPA-KDALSTVEL--DWNCGFV  141 (198)
T ss_pred             hh---cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccH-HHHHHHHHh--hcCCcEE
Confidence            33   3899999999976322221 122222222    36899999999999753211011 111111111  1236789


Q ss_pred             EeccCCCCChHHHHHHHHHhhc
Q 029158          173 MVSSKSGAGIRSLRTVLSKIAR  194 (198)
Q Consensus       173 ~~Sa~~~~gi~~l~~~i~~~~~  194 (198)
                      ++||++|.|+++++++|.+.+.
T Consensus       142 ~~Sa~~g~gv~~l~~~l~~~~~  163 (198)
T cd04147         142 ETSAKDNENVLEVFKELLRQAN  163 (198)
T ss_pred             EecCCCCCCHHHHHHHHHHHhh
Confidence            9999999999999999998765

Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd04131 Rnd Rnd subfamily

Probab=99.87  E-value=4.1e-21  Score=136.16  Aligned_cols=152  Identities=15%  Similarity=0.090  Sum_probs=95.3

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeE-----EEEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHH
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT-----INFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE   96 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~-----~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~   96 (198)
                      .+|+++|.+|+|||||++++.+..   ....+.+|...     ..+......+.+|||+|..          .+..+...
T Consensus         2 ~Kiv~vG~~~vGKTsli~~~~~~~---f~~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~----------~~~~~~~~   68 (178)
T cd04131           2 CKIVVVGDVQCGKTALLQVFAKDC---YPETYVPTVFENYTASFEIDEQRIELSLWDTSGSP----------YYDNVRPL   68 (178)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCc---CCCCcCCceEEEEEEEEEECCEEEEEEEEECCCch----------hhhhcchh
Confidence            579999999999999999999873   22333333221     1111224678999999952          11222333


Q ss_pred             HHhcccccceEEEEEeCCCCCCcCc--HHHHHHHHhh--CCcEEEEEeccCCCCcHH-HH---------HHHHHHHHHHH
Q 029158           97 YVSTRVSLKRVCLLIDTKWGVKPRD--HELISLMERS--QTKYQVVLTKTDTVFPID-VA---------RRAMQIEESLK  162 (198)
Q Consensus        97 ~~~~~~~~d~vi~v~d~~~~~~~~~--~~~~~~~~~~--~~p~iiv~nK~Dl~~~~~-~~---------~~~~~~~~~~~  162 (198)
                      ++.   .+|++++|+|.++..+-..  ..|+..+...  +.|+++|+||+|+..... ..         -..++.++...
T Consensus        69 ~~~---~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~  145 (178)
T cd04131          69 CYP---DSDAVLICFDISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAK  145 (178)
T ss_pred             hcC---CCCEEEEEEECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHH
Confidence            333   4899999999986433222  2455555433  689999999999964211 00         00111112211


Q ss_pred             hccCCCC-CcEEeccCCCCC-hHHHHHHHHHh
Q 029158          163 ANNSLVQ-PVMMVSSKSGAG-IRSLRTVLSKI  192 (198)
Q Consensus       163 ~~~~~~~-~v~~~Sa~~~~g-i~~l~~~i~~~  192 (198)
                      .   .+. +++++||++|+| ++++|..+.+.
T Consensus       146 ~---~~~~~~~E~SA~~~~~~v~~~F~~~~~~  174 (178)
T cd04131         146 Q---LGAEIYLECSAFTSEKSVRDIFHVATMA  174 (178)
T ss_pred             H---hCCCEEEECccCcCCcCHHHHHHHHHHH
Confidence            1   134 799999999995 99999988874

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily

Probab=99.87  E-value=6.8e-21  Score=139.65  Aligned_cols=156  Identities=16%  Similarity=0.076  Sum_probs=99.2

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeE-----EEEEEeCCceEEEeCCCCccccchhHHHHHHHHH
Q 029158           19 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT-----INFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEEL   93 (198)
Q Consensus        19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~-----~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~   93 (198)
                      ....+|+++|.+|+|||||+.++++...   ...+.+|...     ..+......+.+|||+|.          +.+..+
T Consensus        11 ~~~~KIvvvGd~~VGKTsLi~r~~~~~F---~~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~----------e~~~~~   77 (232)
T cd04174          11 VMRCKLVLVGDVQCGKTAMLQVLAKDCY---PETYVPTVFENYTAGLETEEQRVELSLWDTSGS----------PYYDNV   77 (232)
T ss_pred             eeeEEEEEECCCCCcHHHHHHHHhcCCC---CCCcCCceeeeeEEEEEECCEEEEEEEEeCCCc----------hhhHHH
Confidence            3567899999999999999999998732   2233333211     122223467999999994          222344


Q ss_pred             HHHHHhcccccceEEEEEeCCCCCCcCc--HHHHHHHHhh--CCcEEEEEeccCCCCcHH----------HHHHHHHHHH
Q 029158           94 VKEYVSTRVSLKRVCLLIDTKWGVKPRD--HELISLMERS--QTKYQVVLTKTDTVFPID----------VARRAMQIEE  159 (198)
Q Consensus        94 ~~~~~~~~~~~d~vi~v~d~~~~~~~~~--~~~~~~~~~~--~~p~iiv~nK~Dl~~~~~----------~~~~~~~~~~  159 (198)
                      ...++..   +|++++|+|.++..+-..  ..|+..+...  +.|+++|+||+|+.....          ..-..++.++
T Consensus        78 ~~~~~~~---ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~  154 (232)
T cd04174          78 RPLCYSD---SDAVLLCFDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCA  154 (232)
T ss_pred             HHHHcCC---CcEEEEEEECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHH
Confidence            4445444   899999999986433222  2455555432  689999999999864210          0000112222


Q ss_pred             HHHhccCCCC-CcEEeccCCCC-ChHHHHHHHHHhh
Q 029158          160 SLKANNSLVQ-PVMMVSSKSGA-GIRSLRTVLSKIA  193 (198)
Q Consensus       160 ~~~~~~~~~~-~v~~~Sa~~~~-gi~~l~~~i~~~~  193 (198)
                      ....   .+. +++++||++|+ |++++|+.+...+
T Consensus       155 ~a~~---~~~~~~~EtSAktg~~~V~e~F~~~~~~~  187 (232)
T cd04174         155 LAKQ---LGAEVYLECSAFTSEKSIHSIFRSASLLC  187 (232)
T ss_pred             HHHH---cCCCEEEEccCCcCCcCHHHHHHHHHHHH
Confidence            2222   135 58999999998 8999999887654

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04114 Rab30 Rab30 subfamily

Probab=99.87  E-value=4.9e-21  Score=134.69  Aligned_cols=154  Identities=18%  Similarity=0.151  Sum_probs=95.4

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEE---EEEE--eCCceEEEeCCCCccccchhHHHHHHHHHH
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---NFFK--LGTKLCLVDLPGYGFAYAKEEVKDAWEELV   94 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~---~~~~--~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~   94 (198)
                      ...+|+++|++|+|||||++++.+.. .. ....+..+.+.   .+..  ....+.+|||||...          +....
T Consensus         6 ~~~~v~v~G~~~~GKSsli~~l~~~~-~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~----------~~~~~   73 (169)
T cd04114           6 FLFKIVLIGNAGVGKTCLVRRFTQGL-FP-PGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQER----------FRSIT   73 (169)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCC-CC-CCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHH----------HHHHH
Confidence            45789999999999999999998652 11 11111111111   1111  235688999999521          12223


Q ss_pred             HHHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHH---hhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCC
Q 029158           95 KEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLME---RSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQP  170 (198)
Q Consensus        95 ~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~---~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (198)
                      ..++.   .+|++++++|++....... ..++..+.   ..+.|+++|+||+|+....+...   ...+.+....  ..+
T Consensus        74 ~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i~~---~~~~~~~~~~--~~~  145 (169)
T cd04114          74 QSYYR---SANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERREVSQ---QRAEEFSDAQ--DMY  145 (169)
T ss_pred             HHHhc---CCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCH---HHHHHHHHHc--CCe
Confidence            33433   3899999999976322111 23333333   33689999999999975433221   1111222111  367


Q ss_pred             cEEeccCCCCChHHHHHHHHHhh
Q 029158          171 VMMVSSKSGAGIRSLRTVLSKIA  193 (198)
Q Consensus       171 v~~~Sa~~~~gi~~l~~~i~~~~  193 (198)
                      ++++||++|.|+++++++|.+.+
T Consensus       146 ~~~~Sa~~~~gv~~l~~~i~~~~  168 (169)
T cd04114         146 YLETSAKESDNVEKLFLDLACRL  168 (169)
T ss_pred             EEEeeCCCCCCHHHHHHHHHHHh
Confidence            99999999999999999998753

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>TIGR00437 feoB ferrous iron transporter FeoB

Probab=99.87  E-value=5.4e-21  Score=157.11  Aligned_cols=151  Identities=26%  Similarity=0.290  Sum_probs=106.1

Q ss_pred             cCCCCCHHHHHHHHhcCccceeecCCCCceeEEEE---EEeCCceEEEeCCCCccccchhHHHHHHHHHHHHHHhccccc
Q 029158           28 GRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF---FKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSL  104 (198)
Q Consensus        28 G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~---~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (198)
                      |.+|+|||||+|++.+..  ...++++++|.+...   ...+.++.+|||||..+-..... .   +...+.++.. ..+
T Consensus         1 G~pNvGKSSL~N~Ltg~~--~~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~-~---e~v~~~~l~~-~~a   73 (591)
T TIGR00437         1 GNPNVGKSTLFNALTGAN--QTVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSL-E---EEVARDYLLN-EKP   73 (591)
T ss_pred             CCCCCCHHHHHHHHhCCC--CeecCCCCeEEEEEEEEEEECCeEEEEEECCCccccCccch-H---HHHHHHHHhh-cCC
Confidence            899999999999999974  467888999887542   23356799999999754211111 1   2233344332 358


Q ss_pred             ceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEeccCCCCChHH
Q 029158          105 KRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRS  184 (198)
Q Consensus       105 d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~~~gi~~  184 (198)
                      |++++|+|+++  .+...+...++.+.++|+++|+||+|+..........+.+.+.+      +.+++++||++|+|+++
T Consensus        74 DvvI~VvDat~--ler~l~l~~ql~~~~~PiIIVlNK~Dl~~~~~i~~d~~~L~~~l------g~pvv~tSA~tg~Gi~e  145 (591)
T TIGR00437        74 DLVVNVVDASN--LERNLYLTLQLLELGIPMILALNLVDEAEKKGIRIDEEKLEERL------GVPVVPTSATEGRGIER  145 (591)
T ss_pred             CEEEEEecCCc--chhhHHHHHHHHhcCCCEEEEEehhHHHHhCCChhhHHHHHHHc------CCCEEEEECCCCCCHHH
Confidence            99999999986  23345555566667899999999999865433222223333322      47999999999999999


Q ss_pred             HHHHHHHhh
Q 029158          185 LRTVLSKIA  193 (198)
Q Consensus       185 l~~~i~~~~  193 (198)
                      +++++.+.+
T Consensus       146 L~~~i~~~~  154 (591)
T TIGR00437       146 LKDAIRKAI  154 (591)
T ss_pred             HHHHHHHHh
Confidence            999998754

FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.

>PRK12735 elongation factor Tu; Reviewed

Probab=99.87  E-value=1.9e-20  Score=147.96  Aligned_cols=163  Identities=20%  Similarity=0.256  Sum_probs=116.8

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCc------cc--------eeecCCCCceeEEEEEE---eCCceEEEeCCCCcccc
Q 029158           19 PDLPEIAFAGRSNVGKSSMLNALTRQW------GV--------VRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAY   81 (198)
Q Consensus        19 ~~~~~v~~vG~~~~GKSsli~~l~~~~------~~--------~~~~~~~~~t~~~~~~~---~~~~~~iiDtpG~~~~~   81 (198)
                      ....+|+++|.+++|||||+++|++..      ..        .......++|.+.....   .+.++.++||||+    
T Consensus        10 ~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh----   85 (396)
T PRK12735         10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGH----   85 (396)
T ss_pred             CCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCH----
Confidence            345789999999999999999998620      00        01112345665544222   3567999999997    


Q ss_pred             chhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEE-EEEeccCCCCcHHH-HHHHHHHHH
Q 029158           82 AKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQ-VVLTKTDTVFPIDV-ARRAMQIEE  159 (198)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~i-iv~nK~Dl~~~~~~-~~~~~~~~~  159 (198)
                               .++...+......+|++++|+|+..++...+.+++..+...++|.+ +++||+|+.+.++. +....++.+
T Consensus        86 ---------~~f~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~  156 (396)
T PRK12735         86 ---------ADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVRE  156 (396)
T ss_pred             ---------HHHHHHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEecCCcchHHHHHHHHHHHHH
Confidence                     4556677777778999999999999887777888888887789966 57999999854332 233345555


Q ss_pred             HHHhccC--CCCCcEEeccCCCC----------ChHHHHHHHHHhhc
Q 029158          160 SLKANNS--LVQPVMMVSSKSGA----------GIRSLRTVLSKIAR  194 (198)
Q Consensus       160 ~~~~~~~--~~~~v~~~Sa~~~~----------gi~~l~~~i~~~~~  194 (198)
                      .+.....  ...+++++||.+|.          ++.+|++.|...++
T Consensus       157 ~l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~  203 (396)
T PRK12735        157 LLSKYDFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYIP  203 (396)
T ss_pred             HHHHcCCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcCC
Confidence            5554332  24789999999984          67888888877653

>PRK04004 translation initiation factor IF-2; Validated

Probab=99.86  E-value=2.8e-20  Score=152.58  Aligned_cols=158  Identities=23%  Similarity=0.352  Sum_probs=103.6

Q ss_pred             CCCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCC-CceeEEEE--EEe-------------------CCceEEEeCC
Q 029158           18 APDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKP-GLTQTINF--FKL-------------------GTKLCLVDLP   75 (198)
Q Consensus        18 ~~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~-~~t~~~~~--~~~-------------------~~~~~iiDtp   75 (198)
                      ..+.|.|+++|.+++|||||+++|.+. .+.  ...+ +.|+....  ...                   -..+.+||||
T Consensus         3 ~~R~p~V~i~Gh~~~GKTSLl~~l~~~-~v~--~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTP   79 (586)
T PRK04004          3 KLRQPIVVVLGHVDHGKTTLLDKIRGT-AVA--AKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTP   79 (586)
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHhCc-ccc--cCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECC
Confidence            457789999999999999999999876 222  1121 22322111  000                   0137899999


Q ss_pred             CCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHH------
Q 029158           76 GYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPID------  149 (198)
Q Consensus        76 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~------  149 (198)
                      |+..          +..+.   ......+|++++|+|+++++.....+.+..+...++|+++++||+|+.....      
T Consensus        80 G~e~----------f~~~~---~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~~~vpiIvviNK~D~~~~~~~~~~~~  146 (586)
T PRK04004         80 GHEA----------FTNLR---KRGGALADIAILVVDINEGFQPQTIEAINILKRRKTPFVVAANKIDRIPGWKSTEDAP  146 (586)
T ss_pred             ChHH----------HHHHH---HHhHhhCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCchhhhhhcCch
Confidence            9621          12222   2233459999999999998777777778877777899999999999863110      


Q ss_pred             -----------HH----HHHHHHHHHHHhc------------cCCCCCcEEeccCCCCChHHHHHHHHH
Q 029158          150 -----------VA----RRAMQIEESLKAN------------NSLVQPVMMVSSKSGAGIRSLRTVLSK  191 (198)
Q Consensus       150 -----------~~----~~~~~~~~~~~~~------------~~~~~~v~~~Sa~~~~gi~~l~~~i~~  191 (198)
                                 ..    +....+...+...            .....+++++||++|+|+++|.+.+..
T Consensus       147 ~~e~~~~~~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~  215 (586)
T PRK04004        147 FLESIEKQSQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAG  215 (586)
T ss_pred             HHHHHhhhhHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHH
Confidence                       00    1111121222211            123578999999999999999988764

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=99.86  E-value=3.5e-21  Score=134.92  Aligned_cols=151  Identities=15%  Similarity=0.167  Sum_probs=95.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCccceeecCCCCce-e-EEEEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHHHHhc
Q 029158           23 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT-Q-TINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVST  100 (198)
Q Consensus        23 ~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t-~-~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~  100 (198)
                      .|+++|.+|+|||||++++.+....   ..+.+|. . ...+...+..+.+|||||...-          ..+...++..
T Consensus         1 ~i~ivG~~~vGKTsli~~~~~~~~~---~~~~pt~g~~~~~i~~~~~~l~i~Dt~G~~~~----------~~~~~~~~~~   67 (164)
T cd04162           1 QILVLGLDGAGKTSLLHSLSSERSL---ESVVPTTGFNSVAIPTQDAIMELLEIGGSQNL----------RKYWKRYLSG   67 (164)
T ss_pred             CEEEECCCCCCHHHHHHHHhcCCCc---ccccccCCcceEEEeeCCeEEEEEECCCCcch----------hHHHHHHHhh
Confidence            3799999999999999999987322   2222221 1 1223334678999999996321          2223334433


Q ss_pred             ccccceEEEEEeCCCCCCcC-cHHHHHHHHh--hCCcEEEEEeccCCCCcHHHHHHHHHHH-HHHHhccCCCCCcEEecc
Q 029158          101 RVSLKRVCLLIDTKWGVKPR-DHELISLMER--SQTKYQVVLTKTDTVFPIDVARRAMQIE-ESLKANNSLVQPVMMVSS  176 (198)
Q Consensus       101 ~~~~d~vi~v~d~~~~~~~~-~~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~Sa  176 (198)
                         +|++++|+|+++...-. ...++..+..  .++|+++|+||+|+............+. +.+.  ....++++++||
T Consensus        68 ---ad~ii~V~D~t~~~s~~~~~~~l~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~Sa  142 (164)
T cd04162          68 ---SQGLIFVVDSADSERLPLARQELHQLLQHPPDLPLVVLANKQDLPAARSVQEIHKELELEPIA--RGRRWILQGTSL  142 (164)
T ss_pred             ---CCEEEEEEECCCHHHHHHHHHHHHHHHhCCCCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhc--CCCceEEEEeee
Confidence               89999999997632111 1223333322  3699999999999976554433222221 1111  223577899999


Q ss_pred             CC------CCChHHHHHHHHH
Q 029158          177 KS------GAGIRSLRTVLSK  191 (198)
Q Consensus       177 ~~------~~gi~~l~~~i~~  191 (198)
                      ++      ++|++++++.+..
T Consensus       143 ~~~~s~~~~~~v~~~~~~~~~  163 (164)
T cd04162         143 DDDGSPSRMEAVKDLLSQLIN  163 (164)
T ss_pred             cCCCChhHHHHHHHHHHHHhc
Confidence            98      9999999998753

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>PRK09866 hypothetical protein; Provisional

Probab=99.86  E-value=3.9e-20  Score=149.08  Aligned_cols=118  Identities=19%  Similarity=0.109  Sum_probs=83.6

Q ss_pred             CceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhC--CcEEEEEeccCC
Q 029158           67 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQ--TKYQVVLTKTDT  144 (198)
Q Consensus        67 ~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~--~p~iiv~nK~Dl  144 (198)
                      .++.|+||||+...... ..    ...+.+   ....+|+|+||+|+.......+..+++.+...+  .|+++|+||+|+
T Consensus       230 ~QIIFVDTPGIhk~~~~-~L----~k~M~e---qL~eADvVLFVVDat~~~s~~DeeIlk~Lkk~~K~~PVILVVNKIDl  301 (741)
T PRK09866        230 GQLTLLDTPGPNEAGQP-HL----QKMLNQ---QLARASAVLAVLDYTQLKSISDEEVREAILAVGQSVPLYVLVNKFDQ  301 (741)
T ss_pred             CCEEEEECCCCCCccch-HH----HHHHHH---HHhhCCEEEEEEeCCCCCChhHHHHHHHHHhcCCCCCEEEEEEcccC
Confidence            47899999998653221 11    111222   234489999999999877788888888888766  499999999999


Q ss_pred             CCcHH--HHHHHHHHHHHHHhccCCCCCcEEeccCCCCChHHHHHHHHHh
Q 029158          145 VFPID--VARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKI  192 (198)
Q Consensus       145 ~~~~~--~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~~~gi~~l~~~i~~~  192 (198)
                      .+..+  .+.....+...+.........++++||+.|.|++++.+.|..+
T Consensus       302 ~dreeddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~~  351 (741)
T PRK09866        302 QDRNSDDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELANN  351 (741)
T ss_pred             CCcccchHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHhC
Confidence            75332  3344444444433323335679999999999999999999874

>cd04125 RabA_like RabA-like subfamily

Probab=99.86  E-value=1.4e-20  Score=134.77  Aligned_cols=154  Identities=22%  Similarity=0.169  Sum_probs=94.6

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEE---eCCceEEEeCCCCccccchhHHHHHHHHHHHHHH
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV   98 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~   98 (198)
                      .+|+++|.+|+|||||++++.+........+..+.........   ....+.+|||||...          +......++
T Consensus         1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~----------~~~~~~~~~   70 (188)
T cd04125           1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQER----------FRSLNNSYY   70 (188)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHH----------HHhhHHHHc
Confidence            4799999999999999999998731111111111111111111   235678999999521          122333333


Q ss_pred             hcccccceEEEEEeCCCCCCcCc-HHHHHHHHh---hCCcEEEEEeccCCCCcHHHH-HHHHHHHHHHHhccCCCCCcEE
Q 029158           99 STRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDVA-RRAMQIEESLKANNSLVQPVMM  173 (198)
Q Consensus        99 ~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~---~~~p~iiv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~  173 (198)
                      .   .+|++++|+|.++..+-.. ..++..+..   ...|+++|+||+|+....... .....+.+.      .+.++++
T Consensus        71 ~---~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~------~~~~~~e  141 (188)
T cd04125          71 R---GAHGYLLVYDVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNKVVDSNIAKSFCDS------LNIPFFE  141 (188)
T ss_pred             c---CCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccccCCHHHHHHHHHH------cCCeEEE
Confidence            3   4899999999976322111 223444433   247999999999997543211 111111111      1468999


Q ss_pred             eccCCCCChHHHHHHHHHhhc
Q 029158          174 VSSKSGAGIRSLRTVLSKIAR  194 (198)
Q Consensus       174 ~Sa~~~~gi~~l~~~i~~~~~  194 (198)
                      +||+++.|++++++++.+.+.
T Consensus       142 vSa~~~~~i~~~f~~l~~~~~  162 (188)
T cd04125         142 TSAKQSINVEEAFILLVKLII  162 (188)
T ss_pred             EeCCCCCCHHHHHHHHHHHHH
Confidence            999999999999999887653

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04123 Rab21 Rab21 subfamily

Probab=99.86  E-value=1.5e-20  Score=131.08  Aligned_cols=151  Identities=19%  Similarity=0.178  Sum_probs=94.9

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCce-eEEE---EE--EeCCceEEEeCCCCccccchhHHHHHHHHHHH
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT-QTIN---FF--KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVK   95 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t-~~~~---~~--~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~   95 (198)
                      .+|+++|++|+|||||++++++.. ..  .....++ ....   +.  .....+.+|||||..          .+.....
T Consensus         1 ~ki~i~G~~~~GKStli~~l~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~----------~~~~~~~   67 (162)
T cd04123           1 FKVVLLGEGRVGKTSLVLRYVENK-FN--EKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQE----------RYHALGP   67 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCC-CC--CCcCCccceeEEEEEEEECCEEEEEEEEECCchH----------HHHHhhH
Confidence            379999999999999999999873 22  1222222 2211   11  123468999999941          2233333


Q ss_pred             HHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHh---hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCc
Q 029158           96 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPV  171 (198)
Q Consensus        96 ~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~---~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v  171 (198)
                      .++.   .+|++++|+|.++...... ..++..+..   .+.|+++|+||+|+........  +.+.+....   ...++
T Consensus        68 ~~~~---~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~~--~~~~~~~~~---~~~~~  139 (162)
T cd04123          68 IYYR---DADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVSK--SEAEEYAKS---VGAKH  139 (162)
T ss_pred             HHhc---cCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCH--HHHHHHHHH---cCCEE
Confidence            4443   3899999999876322211 123333332   2589999999999975332111  111111111   14678


Q ss_pred             EEeccCCCCChHHHHHHHHHhh
Q 029158          172 MMVSSKSGAGIRSLRTVLSKIA  193 (198)
Q Consensus       172 ~~~Sa~~~~gi~~l~~~i~~~~  193 (198)
                      +++||+++.|++++++++.+.+
T Consensus       140 ~~~s~~~~~gi~~~~~~l~~~~  161 (162)
T cd04123         140 FETSAKTGKGIEELFLSLAKRM  161 (162)
T ss_pred             EEEeCCCCCCHHHHHHHHHHHh
Confidence            9999999999999999998764

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>cd00157 Rho Rho (Ras homology) family

Probab=99.86  E-value=5e-21  Score=134.80  Aligned_cols=152  Identities=14%  Similarity=0.032  Sum_probs=95.4

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEE-----EEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHH
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI-----NFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE   96 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~-----~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~   96 (198)
                      .+|+++|++|+|||||+++|++...   ...+.++..+.     ........+.+|||||....          ......
T Consensus         1 iki~i~G~~~~GKSsli~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~----------~~~~~~   67 (171)
T cd00157           1 IKIVVVGDGAVGKTCLLISYTTGKF---PTEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEY----------DRLRPL   67 (171)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCC---CCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccc----------cccchh
Confidence            4799999999999999999998742   12222222211     11122456899999996431          111111


Q ss_pred             HHhcccccceEEEEEeCCCCCC--cCcHHHHHHHHhh--CCcEEEEEeccCCCCcHHHHHH---------HHHHHHHHHh
Q 029158           97 YVSTRVSLKRVCLLIDTKWGVK--PRDHELISLMERS--QTKYQVVLTKTDTVFPIDVARR---------AMQIEESLKA  163 (198)
Q Consensus        97 ~~~~~~~~d~vi~v~d~~~~~~--~~~~~~~~~~~~~--~~p~iiv~nK~Dl~~~~~~~~~---------~~~~~~~~~~  163 (198)
                      ++   ..+|++++++|+++..+  ....+++..+...  +.|+++|+||+|+.........         .+...+....
T Consensus        68 ~~---~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~  144 (171)
T cd00157          68 SY---PNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKE  144 (171)
T ss_pred             hc---CCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHH
Confidence            12   34899999999976222  1223345544443  5999999999999876543210         1222222222


Q ss_pred             ccCCCCCcEEeccCCCCChHHHHHHHHH
Q 029158          164 NNSLVQPVMMVSSKSGAGIRSLRTVLSK  191 (198)
Q Consensus       164 ~~~~~~~v~~~Sa~~~~gi~~l~~~i~~  191 (198)
                      . + ..+++++||++|+|+++++++|.+
T Consensus       145 ~-~-~~~~~~~Sa~~~~gi~~l~~~i~~  170 (171)
T cd00157         145 I-G-AIGYMECSALTQEGVKEVFEEAIR  170 (171)
T ss_pred             h-C-CeEEEEeecCCCCCHHHHHHHHhh
Confidence            1 1 238999999999999999999875

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>cd04133 Rop_like Rop subfamily

Probab=99.86  E-value=5.3e-21  Score=135.20  Aligned_cols=153  Identities=17%  Similarity=0.057  Sum_probs=98.0

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeE-----EEEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHH
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT-----INFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE   96 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~-----~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~   96 (198)
                      .+|+++|.+|+|||||+.++.....   ...+.+|..+     ........++.+|||+|...          +..+...
T Consensus         2 ~kivv~G~~~vGKTsli~~~~~~~f---~~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~----------~~~~~~~   68 (176)
T cd04133           2 IKCVTVGDGAVGKTCMLICYTSNKF---PTDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQED----------YNRLRPL   68 (176)
T ss_pred             eEEEEECCCCCcHHHHHHHHhcCCC---CCCCCCcceeeeEEEEEECCEEEEEEEEECCCCcc----------ccccchh
Confidence            4799999999999999999998742   2233333322     11111246789999999632          1233333


Q ss_pred             HHhcccccceEEEEEeCCCCCCcCc--HHHHHHHHh--hCCcEEEEEeccCCCCcHHH--------HHHHHHHHHHHHhc
Q 029158           97 YVSTRVSLKRVCLLIDTKWGVKPRD--HELISLMER--SQTKYQVVLTKTDTVFPIDV--------ARRAMQIEESLKAN  164 (198)
Q Consensus        97 ~~~~~~~~d~vi~v~d~~~~~~~~~--~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~~--------~~~~~~~~~~~~~~  164 (198)
                      ++.   .+|++++|+|.++..+-..  ..|+..+..  .+.|+++|+||+|+......        .-..++.++.....
T Consensus        69 ~~~---~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~  145 (176)
T cd04133          69 SYR---GADVFVLAFSLISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQI  145 (176)
T ss_pred             hcC---CCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHc
Confidence            444   4899999999986433332  245555543  26899999999999653210        00011222221111


Q ss_pred             cCCCC-CcEEeccCCCCChHHHHHHHHHhh
Q 029158          165 NSLVQ-PVMMVSSKSGAGIRSLRTVLSKIA  193 (198)
Q Consensus       165 ~~~~~-~v~~~Sa~~~~gi~~l~~~i~~~~  193 (198)
                         +. +++++||++|.|++++|+.+.+.+
T Consensus       146 ---~~~~~~E~SAk~~~nV~~~F~~~~~~~  172 (176)
T cd04133         146 ---GAAAYIECSSKTQQNVKAVFDAAIKVV  172 (176)
T ss_pred             ---CCCEEEECCCCcccCHHHHHHHHHHHH
Confidence               34 699999999999999999998764

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,

>cd01870 RhoA_like RhoA-like subfamily

Probab=99.86  E-value=8.4e-21  Score=134.27  Aligned_cols=155  Identities=13%  Similarity=0.055  Sum_probs=94.5

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeE-----EEEEEeCCceEEEeCCCCccccchhHHHHHHHHHHH
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT-----INFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVK   95 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~-----~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~   95 (198)
                      +.+|+++|++|+|||||++++++...   ...+.++..+     ..+......+.+|||||....          ..+..
T Consensus         1 ~~ki~iiG~~~~GKTsl~~~~~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~----------~~~~~   67 (175)
T cd01870           1 RKKLVIVGDGACGKTCLLIVFSKDQF---PEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY----------DRLRP   67 (175)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhcCCC---CCCCCCccccceEEEEEECCEEEEEEEEeCCCchhh----------hhccc
Confidence            36899999999999999999998732   2223222211     112122356899999996221          11111


Q ss_pred             HHHhcccccceEEEEEeCCCCCCcCc--HHHHHHHHh--hCCcEEEEEeccCCCCcHHHHHHH----------HHHHHHH
Q 029158           96 EYVSTRVSLKRVCLLIDTKWGVKPRD--HELISLMER--SQTKYQVVLTKTDTVFPIDVARRA----------MQIEESL  161 (198)
Q Consensus        96 ~~~~~~~~~d~vi~v~d~~~~~~~~~--~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~~~~~~----------~~~~~~~  161 (198)
                      .   ....+|++++++|..+...-..  ..++..+..  .+.|+++|+||+|+..........          ...++..
T Consensus        68 ~---~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~  144 (175)
T cd01870          68 L---SYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMA  144 (175)
T ss_pred             c---ccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHH
Confidence            1   2245899999999875211111  223344433  268999999999987543221110          1111111


Q ss_pred             HhccCCCCCcEEeccCCCCChHHHHHHHHHhh
Q 029158          162 KANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA  193 (198)
Q Consensus       162 ~~~~~~~~~v~~~Sa~~~~gi~~l~~~i~~~~  193 (198)
                      ...  ...+++++||++|.|+++++++|.+.+
T Consensus       145 ~~~--~~~~~~~~Sa~~~~~v~~lf~~l~~~~  174 (175)
T cd01870         145 NKI--GAFGYMECSAKTKEGVREVFEMATRAA  174 (175)
T ss_pred             HHc--CCcEEEEeccccCcCHHHHHHHHHHHh
Confidence            111  134799999999999999999998654

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>cd04159 Arl10_like Arl10-like subfamily

Probab=99.86  E-value=1.3e-20  Score=130.70  Aligned_cols=150  Identities=17%  Similarity=0.142  Sum_probs=92.7

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCccceeecCCCCce-eEE-EEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHHHHhcc
Q 029158           24 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT-QTI-NFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTR  101 (198)
Q Consensus        24 v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t-~~~-~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~  101 (198)
                      |+++|++|+|||||+++|.+...   ...+.++. .+. ........+.+|||||...          +......++.  
T Consensus         2 i~i~G~~~~GKssl~~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~----------~~~~~~~~~~--   66 (159)
T cd04159           2 ITLVGLQNSGKTTLVNVIAGGQF---SEDTIPTVGFNMRKVTKGNVTLKVWDLGGQPR----------FRSMWERYCR--   66 (159)
T ss_pred             EEEEcCCCCCHHHHHHHHccCCC---CcCccCCCCcceEEEEECCEEEEEEECCCCHh----------HHHHHHHHHh--
Confidence            79999999999999999998742   12222111 111 1222246789999999521          1223333433  


Q ss_pred             cccceEEEEEeCCCCCCcC-cHHHHHHHH----hhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEecc
Q 029158          102 VSLKRVCLLIDTKWGVKPR-DHELISLME----RSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSS  176 (198)
Q Consensus       102 ~~~d~vi~v~d~~~~~~~~-~~~~~~~~~----~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa  176 (198)
                       .+|++++|+|++...... ....+..+.    ..+.|+++|+||+|+............+..  ........+++++|+
T Consensus        67 -~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~Sa  143 (159)
T cd04159          67 -GVNAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVDELIEQMNL--KSITDREVSCYSISC  143 (159)
T ss_pred             -cCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCHHHHHHHhCc--ccccCCceEEEEEEe
Confidence             389999999997521111 112222221    136899999999999765433322222211  111122467899999


Q ss_pred             CCCCChHHHHHHHHH
Q 029158          177 KSGAGIRSLRTVLSK  191 (198)
Q Consensus       177 ~~~~gi~~l~~~i~~  191 (198)
                      ++|.|+++++++|.+
T Consensus       144 ~~~~gi~~l~~~l~~  158 (159)
T cd04159         144 KEKTNIDIVLDWLIK  158 (159)
T ss_pred             ccCCChHHHHHHHhh
Confidence            999999999999875

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>cd01871 Rac1_like Rac1-like subfamily

Probab=99.86  E-value=1.2e-20  Score=133.40  Aligned_cols=153  Identities=14%  Similarity=0.006  Sum_probs=94.9

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeE-----EEEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHH
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT-----INFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE   96 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~-----~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~   96 (198)
                      .+|+++|.+|+|||||+.+++....   ...+.++..+     .........+.+|||||...          +..+...
T Consensus         2 ~ki~iiG~~~vGKSsli~~~~~~~f---~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~----------~~~~~~~   68 (174)
T cd01871           2 IKCVVVGDGAVGKTCLLISYTTNAF---PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED----------YDRLRPL   68 (174)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCC---CCcCCCcceeeeEEEEEECCEEEEEEEEECCCchh----------hhhhhhh
Confidence            4799999999999999999998632   2333333322     11211235788999999521          1222333


Q ss_pred             HHhcccccceEEEEEeCCCCCCcCcH--HHHHHHHhh--CCcEEEEEeccCCCCcHH-HHHH---------HHHHHHHHH
Q 029158           97 YVSTRVSLKRVCLLIDTKWGVKPRDH--ELISLMERS--QTKYQVVLTKTDTVFPID-VARR---------AMQIEESLK  162 (198)
Q Consensus        97 ~~~~~~~~d~vi~v~d~~~~~~~~~~--~~~~~~~~~--~~p~iiv~nK~Dl~~~~~-~~~~---------~~~~~~~~~  162 (198)
                      ++.   .+|++++|+|.++.-+-...  .++..+...  +.|+++|+||+|+..... .+..         .+..++...
T Consensus        69 ~~~---~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~  145 (174)
T cd01871          69 SYP---QTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAK  145 (174)
T ss_pred             hcC---CCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHH
Confidence            333   48999999999863222222  244444332  589999999999965321 1100         011111111


Q ss_pred             hccCCCCCcEEeccCCCCChHHHHHHHHHh
Q 029158          163 ANNSLVQPVMMVSSKSGAGIRSLRTVLSKI  192 (198)
Q Consensus       163 ~~~~~~~~v~~~Sa~~~~gi~~l~~~i~~~  192 (198)
                      ..  ...+++++||++|+|++++++.+.+.
T Consensus       146 ~~--~~~~~~e~Sa~~~~~i~~~f~~l~~~  173 (174)
T cd01871         146 EI--GAVKYLECSALTQKGLKTVFDEAIRA  173 (174)
T ss_pred             Hc--CCcEEEEecccccCCHHHHHHHHHHh
Confidence            11  12589999999999999999998764

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti

>COG3596 Predicted GTPase [General function prediction only]

Probab=99.86  E-value=2.3e-20  Score=135.74  Aligned_cols=167  Identities=23%  Similarity=0.243  Sum_probs=119.3

Q ss_pred             CCCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE---EEEeCCceEEEeCCCCccccchhHHHHHHHHHH
Q 029158           18 APDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELV   94 (198)
Q Consensus        18 ~~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~---~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~   94 (198)
                      .....+|+++|.+|+|||||+|+|+.. ...++...+.++...+   ....+.++++|||||+++....+      .+..
T Consensus        36 ~~~pvnvLi~G~TG~GKSSliNALF~~-~~~~v~~vg~~t~~~~~~~~~~~~~~l~lwDtPG~gdg~~~D------~~~r  108 (296)
T COG3596          36 EKEPVNVLLMGATGAGKSSLINALFQG-EVKEVSKVGVGTDITTRLRLSYDGENLVLWDTPGLGDGKDKD------AEHR  108 (296)
T ss_pred             ccCceeEEEecCCCCcHHHHHHHHHhc-cCceeeecccCCCchhhHHhhccccceEEecCCCcccchhhh------HHHH
Confidence            345667889999999999999999976 3455555544443322   22335789999999998865444      2222


Q ss_pred             HHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhh--CCcEEEEEeccCCCCcH----------------HHHHHHHH
Q 029158           95 KEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERS--QTKYQVVLTKTDTVFPI----------------DVARRAMQ  156 (198)
Q Consensus        95 ~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~--~~p~iiv~nK~Dl~~~~----------------~~~~~~~~  156 (198)
                      ..|.......|++++++|+.+..-..+.+++..+...  +.++++++|.+|...+.                ..++..+.
T Consensus       109 ~~~~d~l~~~DLvL~l~~~~draL~~d~~f~~dVi~~~~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~  188 (296)
T COG3596         109 QLYRDYLPKLDLVLWLIKADDRALGTDEDFLRDVIILGLDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEA  188 (296)
T ss_pred             HHHHHHhhhccEEEEeccCCCccccCCHHHHHHHHHhccCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHH
Confidence            2344444458999999999998888888887766543  58999999999987651                12233344


Q ss_pred             HHHHHHhccCCCCCcEEeccCCCCChHHHHHHHHHhhcc
Q 029158          157 IEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIARF  195 (198)
Q Consensus       157 ~~~~~~~~~~~~~~v~~~Sa~~~~gi~~l~~~i~~~~~~  195 (198)
                      +.+.++.    .-|++..|...++|++++...+.+.++.
T Consensus       189 ~~~~~q~----V~pV~~~~~r~~wgl~~l~~ali~~lp~  223 (296)
T COG3596         189 LGRLFQE----VKPVVAVSGRLPWGLKELVRALITALPV  223 (296)
T ss_pred             HHHHHhh----cCCeEEeccccCccHHHHHHHHHHhCcc
Confidence            4444443    5789999999999999999999987764

>PRK00049 elongation factor Tu; Reviewed

Probab=99.86  E-value=2.7e-20  Score=147.01  Aligned_cols=163  Identities=20%  Similarity=0.256  Sum_probs=118.5

Q ss_pred             CCCCCeEEEEcCCCCCHHHHHHHHhcCcc-------c-------eeecCCCCceeEEEEEE---eCCceEEEeCCCCccc
Q 029158           18 APDLPEIAFAGRSNVGKSSMLNALTRQWG-------V-------VRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFA   80 (198)
Q Consensus        18 ~~~~~~v~~vG~~~~GKSsli~~l~~~~~-------~-------~~~~~~~~~t~~~~~~~---~~~~~~iiDtpG~~~~   80 (198)
                      .....+|+++|..++|||||+++|++...       .       .......++|.+.....   .+.++.++||||+   
T Consensus         9 ~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~---   85 (396)
T PRK00049          9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGH---   85 (396)
T ss_pred             CCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCH---
Confidence            34567899999999999999999987310       0       01112345666554322   3567999999997   


Q ss_pred             cchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEE-EEEeccCCCCcHHH-HHHHHHHH
Q 029158           81 YAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQ-VVLTKTDTVFPIDV-ARRAMQIE  158 (198)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~i-iv~nK~Dl~~~~~~-~~~~~~~~  158 (198)
                                ..+..........+|++++|+|+..+....+.+++..+...++|.+ +++||+|+....+. +....++.
T Consensus        86 ----------~~f~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~  155 (396)
T PRK00049         86 ----------ADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVR  155 (396)
T ss_pred             ----------HHHHHHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHHcCCCEEEEEEeecCCcchHHHHHHHHHHHH
Confidence                      4556666677778999999999999888888888888888899976 58999999864332 23344666


Q ss_pred             HHHHhcc--CCCCCcEEeccCCCC----------ChHHHHHHHHHhh
Q 029158          159 ESLKANN--SLVQPVMMVSSKSGA----------GIRSLRTVLSKIA  193 (198)
Q Consensus       159 ~~~~~~~--~~~~~v~~~Sa~~~~----------gi~~l~~~i~~~~  193 (198)
                      +.+....  ....|++++||.++.          |+.+|++.|.+.+
T Consensus       156 ~~l~~~~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~  202 (396)
T PRK00049        156 ELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYI  202 (396)
T ss_pred             HHHHhcCCCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcC
Confidence            6655432  235899999999875          5678888887754

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.86  E-value=4e-21  Score=135.90  Aligned_cols=158  Identities=18%  Similarity=0.170  Sum_probs=102.6

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHHHH
Q 029158           19 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV   98 (198)
Q Consensus        19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~   98 (198)
                      ....+|+++|+.||||||++++|.... .....+..+... ..+...+..+.+||.+|....          ....+.|+
T Consensus        12 ~~~~~ililGl~~sGKTtll~~l~~~~-~~~~~pT~g~~~-~~i~~~~~~~~~~d~gG~~~~----------~~~w~~y~   79 (175)
T PF00025_consen   12 KKEIKILILGLDGSGKTTLLNRLKNGE-ISETIPTIGFNI-EEIKYKGYSLTIWDLGGQESF----------RPLWKSYF   79 (175)
T ss_dssp             TSEEEEEEEESTTSSHHHHHHHHHSSS-EEEEEEESSEEE-EEEEETTEEEEEEEESSSGGG----------GGGGGGGH
T ss_pred             CcEEEEEEECCCccchHHHHHHhhhcc-ccccCccccccc-ceeeeCcEEEEEEeccccccc----------cccceeec
Confidence            567899999999999999999999763 332222211111 112334678999999995221          22233444


Q ss_pred             hcccccceEEEEEeCCCCCC-cCcHHHH-HHHH---hhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhc-cCCCCCcE
Q 029158           99 STRVSLKRVCLLIDTKWGVK-PRDHELI-SLME---RSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKAN-NSLVQPVM  172 (198)
Q Consensus        99 ~~~~~~d~vi~v~d~~~~~~-~~~~~~~-~~~~---~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~~v~  172 (198)
                      ..   +|+++||+|+++.-. ....+.+ +.+.   ..++|+++++||+|+......++....+.-  ... ......++
T Consensus        80 ~~---~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~~~i~~~l~l--~~l~~~~~~~v~  154 (175)
T PF00025_consen   80 QN---ADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAMSEEEIKEYLGL--EKLKNKRPWSVF  154 (175)
T ss_dssp             TT---ESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSSTHHHHHHHTTG--GGTTSSSCEEEE
T ss_pred             cc---cceeEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCcchhhHHHhhhhh--hhcccCCceEEE
Confidence            43   899999999986211 1112222 2222   236999999999999876554443333321  111 23457799


Q ss_pred             EeccCCCCChHHHHHHHHHhh
Q 029158          173 MVSSKSGAGIRSLRTVLSKIA  193 (198)
Q Consensus       173 ~~Sa~~~~gi~~l~~~i~~~~  193 (198)
                      .+||.+|+|+.+.++||.+.+
T Consensus       155 ~~sa~~g~Gv~e~l~WL~~~~  175 (175)
T PF00025_consen  155 SCSAKTGEGVDEGLEWLIEQI  175 (175)
T ss_dssp             EEBTTTTBTHHHHHHHHHHHH
T ss_pred             eeeccCCcCHHHHHHHHHhcC
Confidence            999999999999999998763

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=99.86  E-value=3.2e-20  Score=130.81  Aligned_cols=151  Identities=18%  Similarity=0.163  Sum_probs=94.2

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCce-eEE-----EEEEeCCceEEEeCCCCccccchhHHHHHHH-HH
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT-QTI-----NFFKLGTKLCLVDLPGYGFAYAKEEVKDAWE-EL   93 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t-~~~-----~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~-~~   93 (198)
                      ..+|+++|++|+|||||+++++.....   ..+..+. .+.     .+......+.+|||||...          +. .+
T Consensus         2 ~~ki~vvG~~~vGKTsli~~~~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~----------~~~~~   68 (170)
T cd04115           2 IFKIIVIGDSNVGKTCLTYRFCAGRFP---ERTEATIGVDFRERTVEIDGERIKVQLWDTAGQER----------FRKSM   68 (170)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCC---CccccceeEEEEEEEEEECCeEEEEEEEeCCChHH----------HHHhh
Confidence            468999999999999999999987311   1111111 111     1111235789999999521          11 22


Q ss_pred             HHHHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHh----hCCcEEEEEeccCCCCcHHHH-HHHHHHHHHHHhccCC
Q 029158           94 VKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPIDVA-RRAMQIEESLKANNSL  167 (198)
Q Consensus        94 ~~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~----~~~p~iiv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~  167 (198)
                      ...++   ..+|++++|+|++....... ..++..+..    .+.|+++|+||+|+....... .....+.+    .  .
T Consensus        69 ~~~~~---~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~----~--~  139 (170)
T cd04115          69 VQHYY---RNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFAD----A--H  139 (170)
T ss_pred             HHHhh---cCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHH----H--c
Confidence            33333   34899999999986432222 234444443    258999999999987543221 11112211    1  1


Q ss_pred             CCCcEEeccCC---CCChHHHHHHHHHhh
Q 029158          168 VQPVMMVSSKS---GAGIRSLRTVLSKIA  193 (198)
Q Consensus       168 ~~~v~~~Sa~~---~~gi~~l~~~i~~~~  193 (198)
                      ..+++++||++   +.++++++..+...+
T Consensus       140 ~~~~~e~Sa~~~~~~~~i~~~f~~l~~~~  168 (170)
T cd04115         140 SMPLFETSAKDPSENDHVEAIFMTLAHKL  168 (170)
T ss_pred             CCcEEEEeccCCcCCCCHHHHHHHHHHHh
Confidence            37899999999   888888888887654

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=99.86  E-value=6e-21  Score=126.21  Aligned_cols=113  Identities=24%  Similarity=0.399  Sum_probs=84.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEE---EeCCceEEEeCCCCccccchhHHHHHHHHHHHHHHh
Q 029158           23 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF---KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS   99 (198)
Q Consensus        23 ~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~---~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~   99 (198)
                      +|+++|.+|+|||||+|+|++. .....++.+++|+.....   ..+..+.++||||+.+........    .....++.
T Consensus         1 ~V~iiG~~~~GKSTlin~l~~~-~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~~~----~~~~~~~~   75 (116)
T PF01926_consen    1 RVAIIGRPNVGKSTLINALTGK-KLAKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGESQDNDG----KEIRKFLE   75 (116)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTS-TSSEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSHHHHHH----HHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHhcc-ccccccccccceeeeeeeeeeeceeeEEEEeCCCCcccchhhHHH----HHHHHHHH
Confidence            6899999999999999999986 456788888888776432   235678999999987653332211    23444555


Q ss_pred             cccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEec
Q 029158          100 TRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTK  141 (198)
Q Consensus       100 ~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK  141 (198)
                      ....+|+++||+|+.+.....+.++++.++ .+.|+++|+||
T Consensus        76 ~~~~~d~ii~vv~~~~~~~~~~~~~~~~l~-~~~~~i~v~NK  116 (116)
T PF01926_consen   76 QISKSDLIIYVVDASNPITEDDKNILRELK-NKKPIILVLNK  116 (116)
T ss_dssp             HHCTESEEEEEEETTSHSHHHHHHHHHHHH-TTSEEEEEEES
T ss_pred             HHHHCCEEEEEEECCCCCCHHHHHHHHHHh-cCCCEEEEEcC
Confidence            556699999999987733444566778786 78999999998

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=99.86  E-value=1.2e-20  Score=130.55  Aligned_cols=154  Identities=23%  Similarity=0.226  Sum_probs=91.7

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEE---EEeC--CceEEEeCCCCccccchhHHHHHHHHHHHH
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF---FKLG--TKLCLVDLPGYGFAYAKEEVKDAWEELVKE   96 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~---~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~   96 (198)
                      .+|+++|.+|+|||||++++.+..  ......+.++.+...   ...+  ..+.+|||||....      ...+......
T Consensus         2 ~ki~~~G~~~~GKstl~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~------~~~~~~~~~~   73 (161)
T TIGR00231         2 IKIVIVGDPNVGKSTLLNRLLGNK--FITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDY------RAIRRLYYRA   73 (161)
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCC--CcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccc------hHHHHHHHhh
Confidence            689999999999999999999984  444444555555432   2223  67899999995321      1111222223


Q ss_pred             HHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEecc
Q 029158           97 YVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSS  176 (198)
Q Consensus        97 ~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa  176 (198)
                      ........|.++++.++..........+...... +.|+++++||+|+....    ........+....  ..+++++||
T Consensus        74 ~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~~-~~p~ivv~nK~D~~~~~----~~~~~~~~~~~~~--~~~~~~~sa  146 (161)
T TIGR00231        74 VESSLRVFDIVILVLDVEEILEKQTKEIIHHAES-NVPIILVGNKIDLRDAK----LKTHVAFLFAKLN--GEPIIPLSA  146 (161)
T ss_pred             hhEEEEEEEEeeeehhhhhHhHHHHHHHHHhccc-CCcEEEEEEcccCCcch----hhHHHHHHHhhcc--CCceEEeec
Confidence            2222223344444444332211111112222222 78999999999998754    1122222222222  367999999


Q ss_pred             CCCCChHHHHHHHH
Q 029158          177 KSGAGIRSLRTVLS  190 (198)
Q Consensus       177 ~~~~gi~~l~~~i~  190 (198)
                      +++.|+.+++++|.
T Consensus       147 ~~~~gv~~~~~~l~  160 (161)
T TIGR00231       147 ETGKNIDSAFKIVE  160 (161)
T ss_pred             CCCCCHHHHHHHhh
Confidence            99999999999875

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>TIGR02034 CysN sulfate adenylyltransferase, large subunit

Probab=99.86  E-value=2.2e-20  Score=147.88  Aligned_cols=150  Identities=15%  Similarity=0.147  Sum_probs=103.8

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCcccee-------------------------e------cCCCCceeEEEEEE---eCC
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQWGVVR-------------------------T------SDKPGLTQTINFFK---LGT   67 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~-------------------------~------~~~~~~t~~~~~~~---~~~   67 (198)
                      .+|+++|+.++|||||+++|+.......                         .      ....+.|.+..+..   .+.
T Consensus         1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~   80 (406)
T TIGR02034         1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR   80 (406)
T ss_pred             CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence            3799999999999999999985421000                         0      01123344443222   356


Q ss_pred             ceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCC-cEEEEEeccCCCC
Q 029158           68 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQT-KYQVVLTKTDTVF  146 (198)
Q Consensus        68 ~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~-p~iiv~nK~Dl~~  146 (198)
                      ++.++||||+             ..+...+......+|++++|+|+..++...+.+.+..+...+. ++++++||+|+..
T Consensus        81 ~~~liDtPGh-------------~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~~~~~~~~~iivviNK~D~~~  147 (406)
T TIGR02034        81 KFIVADTPGH-------------EQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSYIASLLGIRHVVLAVNKMDLVD  147 (406)
T ss_pred             EEEEEeCCCH-------------HHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHHHHHHcCCCcEEEEEEeccccc
Confidence            8999999996             3445555566677999999999999988888888777777665 5888999999985


Q ss_pred             cHH--HHHHHHHHHHHHHhccCCCCCcEEeccCCCCChHH
Q 029158          147 PID--VARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRS  184 (198)
Q Consensus       147 ~~~--~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~~~gi~~  184 (198)
                      ...  .++..+.+.+.+........+++++||++|+|+++
T Consensus       148 ~~~~~~~~i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~  187 (406)
T TIGR02034       148 YDEEVFENIKKDYLAFAEQLGFRDVTFIPLSALKGDNVVS  187 (406)
T ss_pred             chHHHHHHHHHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence            332  22333444433333333356899999999999985

Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).

>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.86  E-value=1e-20  Score=130.69  Aligned_cols=151  Identities=19%  Similarity=0.190  Sum_probs=106.8

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE-------EEEeCCceEEEeCCCCccccchhHHHHHHHHH
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN-------FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEEL   93 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~-------~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~   93 (198)
                      ..+|+++|.+|+|||.|+.++....   ....+ ..|..+.       .......+++|||+|.          +++..+
T Consensus         9 lFKiiliGds~VGKtCL~~Rf~~~~---f~e~~-~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQ----------ERFrti   74 (205)
T KOG0084|consen    9 LFKIILIGDSGVGKTCLLLRFKDDT---FTESY-ISTIGVDFKIRTVELDGKTIKLQIWDTAGQ----------ERFRTI   74 (205)
T ss_pred             EEEEEEECCCCcChhhhhhhhccCC---cchhh-cceeeeEEEEEEeeecceEEEEEeeecccc----------HHHhhh
Confidence            5689999999999999999999873   22222 2333332       2223468999999994          566777


Q ss_pred             HHHHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHhh---CCcEEEEEeccCCCCcHHHHH-HHHHHHHHHHhccCCC
Q 029158           94 VKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS---QTKYQVVLTKTDTVFPIDVAR-RAMQIEESLKANNSLV  168 (198)
Q Consensus        94 ~~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~~---~~p~iiv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~  168 (198)
                      ...|++.   +++|++|+|.+..-+-.. ..|++.+++.   ++|.++|+||+|+.+...... ..+.+...      .+
T Consensus        75 t~syYR~---ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~------~~  145 (205)
T KOG0084|consen   75 TSSYYRG---AHGIIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEKRVVSTEEAQEFADE------LG  145 (205)
T ss_pred             hHhhccC---CCeEEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhheecCHHHHHHHHHh------cC
Confidence            7788877   899999999987322222 3456666654   579999999999986543221 11222222      13


Q ss_pred             CC-cEEeccCCCCChHHHHHHHHHhhc
Q 029158          169 QP-VMMVSSKSGAGIRSLRTVLSKIAR  194 (198)
Q Consensus       169 ~~-v~~~Sa~~~~gi~~l~~~i~~~~~  194 (198)
                      .| ++++|||++.++++.|..|...+.
T Consensus       146 ~~~f~ETSAK~~~NVe~~F~~la~~lk  172 (205)
T KOG0084|consen  146 IPIFLETSAKDSTNVEDAFLTLAKELK  172 (205)
T ss_pred             CcceeecccCCccCHHHHHHHHHHHHH
Confidence            55 999999999999999998877654

>cd04148 RGK RGK subfamily

Probab=99.86  E-value=1.1e-20  Score=138.38  Aligned_cols=153  Identities=13%  Similarity=0.031  Sum_probs=96.1

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCce------eEEEEEEeCCceEEEeCCCCccccchhHHHHHHHHHHH
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT------QTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVK   95 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t------~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~   95 (198)
                      .+|+++|.+|+|||||+++++.....  ...+.++.      ....+......+.+|||||..     .       ....
T Consensus         1 ~KI~lvG~~gvGKTsLi~~~~~~~~~--~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~-----~-------~~~~   66 (221)
T cd04148           1 YRVVMLGSPGVGKSSLASQFTSGEYD--DHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQE-----M-------WTED   66 (221)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCcC--ccCcCCCccccceEEEEEECCEEEEEEEEeCCCcc-----h-------HHHh
Confidence            37999999999999999999866321  01222111      112222234678999999963     0       1111


Q ss_pred             HHHhcccccceEEEEEeCCCCCCcC-cHHHHHHHHh----hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCC
Q 029158           96 EYVSTRVSLKRVCLLIDTKWGVKPR-DHELISLMER----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQP  170 (198)
Q Consensus        96 ~~~~~~~~~d~vi~v~d~~~~~~~~-~~~~~~~~~~----~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (198)
                      .++..  .+|++++|+|+.+..+.. ..+++..+..    .+.|+|+|+||+|+........  +..++ +..  ..+.+
T Consensus        67 ~~~~~--~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~--~~~~~-~a~--~~~~~  139 (221)
T cd04148          67 SCMQY--QGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSV--QEGRA-CAV--VFDCK  139 (221)
T ss_pred             HHhhc--CCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecH--HHHHH-HHH--HcCCe
Confidence            22221  489999999998632211 1334444443    3689999999999975432211  11111 111  12468


Q ss_pred             cEEeccCCCCChHHHHHHHHHhhcc
Q 029158          171 VMMVSSKSGAGIRSLRTVLSKIARF  195 (198)
Q Consensus       171 v~~~Sa~~~~gi~~l~~~i~~~~~~  195 (198)
                      ++++||+++.|+++++++|...+..
T Consensus       140 ~~e~SA~~~~gv~~l~~~l~~~~~~  164 (221)
T cd04148         140 FIETSAGLQHNVDELLEGIVRQIRL  164 (221)
T ss_pred             EEEecCCCCCCHHHHHHHHHHHHHh
Confidence            9999999999999999999987753

The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra

>cd04143 Rhes_like Rhes_like subfamily

Probab=99.86  E-value=1.6e-20  Score=139.38  Aligned_cols=152  Identities=14%  Similarity=0.163  Sum_probs=96.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE--EEE---eCCceEEEeCCCCccccchhHHHHHHHHHHHHH
Q 029158           23 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY   97 (198)
Q Consensus        23 ~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~--~~~---~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~   97 (198)
                      +|+++|.+|+|||||++++++...   ...+.+|+.+..  ...   ....+.+|||+|...          +..+...+
T Consensus         2 KVvvlG~~gvGKTSLi~r~~~~~f---~~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~----------~~~~~~~~   68 (247)
T cd04143           2 RMVVLGASKVGKTAIVSRFLGGRF---EEQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHP----------FPAMRRLS   68 (247)
T ss_pred             EEEEECcCCCCHHHHHHHHHcCCC---CCCCCCChhHhEEEEEEECCEEEEEEEEECCCChh----------hhHHHHHH
Confidence            799999999999999999998732   223444433221  112   235788999999521          12222223


Q ss_pred             HhcccccceEEEEEeCCCCCCcCc-HHHHHHHHh------------hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhc
Q 029158           98 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER------------SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKAN  164 (198)
Q Consensus        98 ~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~------------~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~  164 (198)
                      +.   .+|++++|+|.++..+-.. ..+++.+..            .+.|+|+|+||+|+......  ..+.+++.+...
T Consensus        69 ~~---~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v--~~~ei~~~~~~~  143 (247)
T cd04143          69 IL---TGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREV--QRDEVEQLVGGD  143 (247)
T ss_pred             hc---cCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhcccc--CHHHHHHHHHhc
Confidence            32   3899999999986322111 223333322            25899999999999752211  112233332211


Q ss_pred             cCCCCCcEEeccCCCCChHHHHHHHHHhhc
Q 029158          165 NSLVQPVMMVSSKSGAGIRSLRTVLSKIAR  194 (198)
Q Consensus       165 ~~~~~~v~~~Sa~~~~gi~~l~~~i~~~~~  194 (198)
                        ...+++++||+++.|+++++++|.+.+.
T Consensus       144 --~~~~~~evSAktg~gI~elf~~L~~~~~  171 (247)
T cd04143         144 --ENCAYFEVSAKKNSNLDEMFRALFSLAK  171 (247)
T ss_pred             --CCCEEEEEeCCCCCCHHHHHHHHHHHhc
Confidence              1467999999999999999999988653

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=99.86  E-value=7.5e-21  Score=133.34  Aligned_cols=152  Identities=18%  Similarity=0.142  Sum_probs=93.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeE-----EEEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHHH
Q 029158           23 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT-----INFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY   97 (198)
Q Consensus        23 ~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~-----~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~   97 (198)
                      +|+++|++|+|||||+++++...   ....+.+++..     ..+......+.+|||||.....         ......+
T Consensus         1 ki~vvG~~~~GKtsli~~~~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~---------~~~~~~~   68 (165)
T cd04146           1 KIAVLGASGVGKSALVVRFLTKR---FIGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQAD---------TEQLERS   68 (165)
T ss_pred             CEEEECCCCCcHHHHHHHHHhCc---cccccCCChHHhceEEEEECCEEEEEEEEECCCCcccc---------cchHHHH
Confidence            48999999999999999998763   22333333311     1111123458899999974210         1112223


Q ss_pred             HhcccccceEEEEEeCCCCCCcCc-HHHHHHHHh-----hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCc
Q 029158           98 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER-----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPV  171 (198)
Q Consensus        98 ~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~-----~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v  171 (198)
                      +.   .+|++++++|+++..+-.. ..++..+..     .+.|+++|+||+|+........  +..++....   ...++
T Consensus        69 ~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~--~~~~~~~~~---~~~~~  140 (165)
T cd04146          69 IR---WADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVST--EEGEKLASE---LGCLF  140 (165)
T ss_pred             HH---hCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCH--HHHHHHHHH---cCCEE
Confidence            33   3899999999987422221 223333332     2689999999999864322111  111111111   13689


Q ss_pred             EEeccCCCC-ChHHHHHHHHHhhc
Q 029158          172 MMVSSKSGA-GIRSLRTVLSKIAR  194 (198)
Q Consensus       172 ~~~Sa~~~~-gi~~l~~~i~~~~~  194 (198)
                      +++||+++. |++++++.+.+.+.
T Consensus       141 ~e~Sa~~~~~~v~~~f~~l~~~~~  164 (165)
T cd04146         141 FEVSAAEDYDGVHSVFHELCREVR  164 (165)
T ss_pred             EEeCCCCCchhHHHHHHHHHHHHh
Confidence            999999995 99999999987654

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>cd04177 RSR1 RSR1 subgroup

Probab=99.86  E-value=6.4e-21  Score=134.10  Aligned_cols=151  Identities=13%  Similarity=0.092  Sum_probs=95.2

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeE-----EEEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHH
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT-----INFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE   96 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~-----~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~   96 (198)
                      .+|+++|.+|+|||||++++.+...   ...+.+++..     ..+......+.+|||||...          +..+.+.
T Consensus         2 ~ki~liG~~~~GKTsli~~~~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~----------~~~~~~~   68 (168)
T cd04177           2 YKIVVLGAGGVGKSALTVQFVQNVF---IESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQ----------FTAMREL   68 (168)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCC---CcccCCcchheEEEEEEECCEEEEEEEEeCCCccc----------chhhhHH
Confidence            4799999999999999999997742   2222333321     11212235789999999632          2333444


Q ss_pred             HHhcccccceEEEEEeCCCCCCcC-cHHHHHHHH----hhCCcEEEEEeccCCCCcHHHH-HHHHHHHHHHHhccCCCCC
Q 029158           97 YVSTRVSLKRVCLLIDTKWGVKPR-DHELISLME----RSQTKYQVVLTKTDTVFPIDVA-RRAMQIEESLKANNSLVQP  170 (198)
Q Consensus        97 ~~~~~~~~d~vi~v~d~~~~~~~~-~~~~~~~~~----~~~~p~iiv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~  170 (198)
                      ++..   ++++++|+|.++...-. ...+...+.    ..+.|+++++||+|+....... +....+.+.    . ...+
T Consensus        69 ~~~~---~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~----~-~~~~  140 (168)
T cd04177          69 YIKS---GQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQ----W-GNVP  140 (168)
T ss_pred             HHhh---CCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHHH----c-CCce
Confidence            4443   78999999987631111 122333332    2368999999999997543221 111112111    1 1368


Q ss_pred             cEEeccCCCCChHHHHHHHHHhh
Q 029158          171 VMMVSSKSGAGIRSLRTVLSKIA  193 (198)
Q Consensus       171 v~~~Sa~~~~gi~~l~~~i~~~~  193 (198)
                      ++++||+++.|++++++++...+
T Consensus       141 ~~~~SA~~~~~i~~~f~~i~~~~  163 (168)
T cd04177         141 FYETSARKRTNVDEVFIDLVRQI  163 (168)
T ss_pred             EEEeeCCCCCCHHHHHHHHHHHH
Confidence            99999999999999999998654

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>TIGR00485 EF-Tu translation elongation factor TU

Probab=99.86  E-value=2.8e-20  Score=146.98  Aligned_cols=162  Identities=20%  Similarity=0.260  Sum_probs=113.9

Q ss_pred             CCCCCeEEEEcCCCCCHHHHHHHHhcCc-----c-c--------eeecCCCCceeEEEEEE---eCCceEEEeCCCCccc
Q 029158           18 APDLPEIAFAGRSNVGKSSMLNALTRQW-----G-V--------VRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFA   80 (198)
Q Consensus        18 ~~~~~~v~~vG~~~~GKSsli~~l~~~~-----~-~--------~~~~~~~~~t~~~~~~~---~~~~~~iiDtpG~~~~   80 (198)
                      .....+|+++|..++|||||+++|++..     . .        .......++|.+.....   .+.++.+|||||+   
T Consensus         9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh---   85 (394)
T TIGR00485         9 TKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGH---   85 (394)
T ss_pred             CCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCch---
Confidence            3456789999999999999999998420     0 0        01112355666654322   2567999999997   


Q ss_pred             cchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEE-EEEeccCCCCcHHHH-HHHHHHH
Q 029158           81 YAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQ-VVLTKTDTVFPIDVA-RRAMQIE  158 (198)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~i-iv~nK~Dl~~~~~~~-~~~~~~~  158 (198)
                                ..+...++.....+|++++|+|+.++....+.+++..+...++|.+ +++||+|+.+.++.. ...++++
T Consensus        86 ----------~~f~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~  155 (394)
T TIGR00485        86 ----------ADYVKNMITGAAQMDGAILVVSATDGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVR  155 (394)
T ss_pred             ----------HHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEecccCCHHHHHHHHHHHHH
Confidence                      4455677777778999999999999888888888888888788866 689999998754432 2334566


Q ss_pred             HHHHhccCC--CCCcEEeccCCCC--------ChHHHHHHHHHh
Q 029158          159 ESLKANNSL--VQPVMMVSSKSGA--------GIRSLRTVLSKI  192 (198)
Q Consensus       159 ~~~~~~~~~--~~~v~~~Sa~~~~--------gi~~l~~~i~~~  192 (198)
                      +.+......  .++++++||.++.        ++.++++.|.+.
T Consensus       156 ~~l~~~~~~~~~~~ii~vSa~~g~~g~~~~~~~~~~ll~~l~~~  199 (394)
T TIGR00485       156 ELLSEYDFPGDDTPIIRGSALKALEGDAEWEAKILELMDAVDEY  199 (394)
T ss_pred             HHHHhcCCCccCccEEECccccccccCCchhHhHHHHHHHHHhc
Confidence            665544322  3799999999874        345566665543

This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1)

Probab=99.86  E-value=2.7e-20  Score=134.08  Aligned_cols=168  Identities=11%  Similarity=0.112  Sum_probs=112.3

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEE---EeCCceEEEeCCCCccccchhHHHHHHHHHHHHHH
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF---KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV   98 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~---~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~   98 (198)
                      .+|+++|.+|+|||||+|.|++.+........++.|......   ..+..+.++||||+.+.....  ......+.+.+.
T Consensus         1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~--~~~~~~i~~~~~   78 (196)
T cd01852           1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSP--EQLSKEIVRCLS   78 (196)
T ss_pred             CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccCCh--HHHHHHHHHHHH
Confidence            479999999999999999999984222222234556554322   246789999999998754322  112233444444


Q ss_pred             hcccccceEEEEEeCCCCCCcCcHHHHHHHHhh-----CCcEEEEEeccCCCCcHHHHHHH----HHHHHHHHhccCCCC
Q 029158           99 STRVSLKRVCLLIDTKWGVKPRDHELISLMERS-----QTKYQVVLTKTDTVFPIDVARRA----MQIEESLKANNSLVQ  169 (198)
Q Consensus        99 ~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~-----~~p~iiv~nK~Dl~~~~~~~~~~----~~~~~~~~~~~~~~~  169 (198)
                      .....+|++++|+|+.+ +...+...++.+.+.     -.++++|+|++|.......++..    ..++......   +.
T Consensus        79 ~~~~g~~~illVi~~~~-~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c---~~  154 (196)
T cd01852          79 LSAPGPHAFLLVVPLGR-FTEEEEQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKC---GG  154 (196)
T ss_pred             hcCCCCEEEEEEEECCC-cCHHHHHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHh---CC
Confidence            44567899999999987 777787888777653     26899999999988765544432    2333333332   22


Q ss_pred             CcEEec-----cCCCCChHHHHHHHHHhhcc
Q 029158          170 PVMMVS-----SKSGAGIRSLRTVLSKIARF  195 (198)
Q Consensus       170 ~v~~~S-----a~~~~gi~~l~~~i~~~~~~  195 (198)
                      .++.++     +..+.++++|++.|.+.++.
T Consensus       155 r~~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~  185 (196)
T cd01852         155 RYVAFNNKAKGEEQEQQVKELLAKVESMVKE  185 (196)
T ss_pred             eEEEEeCCCCcchhHHHHHHHHHHHHHHHHh
Confidence            344444     45688999999999887764

This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).

>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases

Probab=99.86  E-value=8.2e-21  Score=134.20  Aligned_cols=152  Identities=16%  Similarity=0.009  Sum_probs=93.3

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEE---EE--EEeCCceEEEeCCCCccccchhHHHHHHHHHHHHHH
Q 029158           24 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---NF--FKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV   98 (198)
Q Consensus        24 v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~---~~--~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~   98 (198)
                      |+++|.+|+|||||++++++...   ...+.++....   .+  ......+.+|||||....          ..+...++
T Consensus         1 i~i~G~~~vGKTsli~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----------~~~~~~~~   67 (174)
T smart00174        1 LVVVGDGAVGKTCLLISYTTNAF---PEDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDY----------DRLRPLSY   67 (174)
T ss_pred             CEEECCCCCCHHHHHHHHHhCCC---CCCCCCcEEeeeeEEEEECCEEEEEEEEECCCCccc----------chhchhhc
Confidence            58999999999999999998732   22222222221   11  111346899999995321          12222222


Q ss_pred             hcccccceEEEEEeCCCCCCcCc--HHHHHHHHhh--CCcEEEEEeccCCCCcHHHH-HH---------HHHHHHHHHhc
Q 029158           99 STRVSLKRVCLLIDTKWGVKPRD--HELISLMERS--QTKYQVVLTKTDTVFPIDVA-RR---------AMQIEESLKAN  164 (198)
Q Consensus        99 ~~~~~~d~vi~v~d~~~~~~~~~--~~~~~~~~~~--~~p~iiv~nK~Dl~~~~~~~-~~---------~~~~~~~~~~~  164 (198)
                         ..+|++++++|.++.-+-..  ..++..+...  +.|+++|+||+|+....... ..         .+..++.....
T Consensus        68 ---~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  144 (174)
T smart00174       68 ---PDTDVFLICFSVDSPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRI  144 (174)
T ss_pred             ---CCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHc
Confidence               34899999999976322111  2344444432  69999999999997633211 00         01111121111


Q ss_pred             cCCCCCcEEeccCCCCChHHHHHHHHHhh
Q 029158          165 NSLVQPVMMVSSKSGAGIRSLRTVLSKIA  193 (198)
Q Consensus       165 ~~~~~~v~~~Sa~~~~gi~~l~~~i~~~~  193 (198)
                        ...+++++||++|+|++++++.+.+.+
T Consensus       145 --~~~~~~e~Sa~~~~~v~~lf~~l~~~~  171 (174)
T smart00174      145 --GAVKYLECSALTQEGVREVFEEAIRAA  171 (174)
T ss_pred             --CCcEEEEecCCCCCCHHHHHHHHHHHh
Confidence              124799999999999999999988764

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.

>cd04111 Rab39 Rab39 subfamily

Probab=99.85  E-value=2.4e-20  Score=135.68  Aligned_cols=152  Identities=19%  Similarity=0.231  Sum_probs=95.2

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE---EEE---eCCceEEEeCCCCccccchhHHHHHHHHHH
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELV   94 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~---~~~---~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~   94 (198)
                      ..+|+++|.+|+|||||++++++.. .... ..+..+.+..   +..   ....+.+|||||.          +.+..+.
T Consensus         2 ~~KIvvvG~~~vGKTsLi~~l~~~~-~~~~-~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~----------~~~~~~~   69 (211)
T cd04111           2 QFRLIVIGDSTVGKSSLLKRFTEGR-FAEV-SDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQ----------ERFRSIT   69 (211)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCC-CCCC-CCceeceEEEEEEEEECCCCEEEEEEEeCCcc----------hhHHHHH
Confidence            3689999999999999999999873 2111 1111111211   111   1246889999995          2223334


Q ss_pred             HHHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHh----hCCcEEEEEeccCCCCcHHHH-HHHHHHHHHHHhccCCC
Q 029158           95 KEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPIDVA-RRAMQIEESLKANNSLV  168 (198)
Q Consensus        95 ~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~----~~~p~iiv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~  168 (198)
                      ..++..   +|++++|+|.++..+-.. .+++..+..    ...|+++|+||+|+....... +....+.+.      .+
T Consensus        70 ~~~~~~---~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~------~~  140 (211)
T cd04111          70 RSYYRN---SVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKD------LG  140 (211)
T ss_pred             HHHhcC---CcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHHH------hC
Confidence            444444   899999999986321111 233443332    246789999999997643211 111222221      13


Q ss_pred             CCcEEeccCCCCChHHHHHHHHHhh
Q 029158          169 QPVMMVSSKSGAGIRSLRTVLSKIA  193 (198)
Q Consensus       169 ~~v~~~Sa~~~~gi~~l~~~i~~~~  193 (198)
                      .+++++||++|+|+++++++|.+.+
T Consensus       141 ~~~~e~Sak~g~~v~e~f~~l~~~~  165 (211)
T cd04111         141 MKYIETSARTGDNVEEAFELLTQEI  165 (211)
T ss_pred             CEEEEEeCCCCCCHHHHHHHHHHHH
Confidence            7899999999999999999998755

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04130 Wrch_1 Wrch-1 subfamily

Probab=99.85  E-value=7.7e-21  Score=134.32  Aligned_cols=152  Identities=12%  Similarity=0.043  Sum_probs=94.4

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE-----EEEeCCceEEEeCCCCccccchhHHHHHHHHHHHH
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN-----FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE   96 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~-----~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~   96 (198)
                      .+++++|++|+|||||+.++.+..   ....+.+|..+..     +......+.+|||||...          +..+...
T Consensus         1 ~k~~i~G~~~~GKtsl~~~~~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~----------~~~~~~~   67 (173)
T cd04130           1 LKCVLVGDGAVGKTSLIVSYTTNG---YPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDE----------FDKLRPL   67 (173)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCC---CCCCCCCceeeeeeEEEEECCEEEEEEEEECCCChh----------hcccccc
Confidence            378999999999999999998763   2334444443321     111235688999999622          1111222


Q ss_pred             HHhcccccceEEEEEeCCCCCCcCc--HHHHHHHHh--hCCcEEEEEeccCCCCcHHHH---------H-HHHHHHHHHH
Q 029158           97 YVSTRVSLKRVCLLIDTKWGVKPRD--HELISLMER--SQTKYQVVLTKTDTVFPIDVA---------R-RAMQIEESLK  162 (198)
Q Consensus        97 ~~~~~~~~d~vi~v~d~~~~~~~~~--~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~~~---------~-~~~~~~~~~~  162 (198)
                      +   ...+|++++|+|..+..+...  ..++..+..  .+.|+++|+||+|+.......         . ..+...+...
T Consensus        68 ~---~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~  144 (173)
T cd04130          68 C---YPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAE  144 (173)
T ss_pred             c---cCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHH
Confidence            2   234899999999986322222  235555543  268999999999997543210         0 0111111111


Q ss_pred             hccCCCCCcEEeccCCCCChHHHHHHHHH
Q 029158          163 ANNSLVQPVMMVSSKSGAGIRSLRTVLSK  191 (198)
Q Consensus       163 ~~~~~~~~v~~~Sa~~~~gi~~l~~~i~~  191 (198)
                      ..  ...+++++||++|.|++++++.+.-
T Consensus       145 ~~--~~~~~~e~Sa~~~~~v~~lf~~~~~  171 (173)
T cd04130         145 KI--GACEYIECSALTQKNLKEVFDTAIL  171 (173)
T ss_pred             Hh--CCCeEEEEeCCCCCCHHHHHHHHHh
Confidence            11  1248999999999999999998753

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,

>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha

Probab=99.85  E-value=5.1e-20  Score=147.05  Aligned_cols=153  Identities=20%  Similarity=0.312  Sum_probs=103.4

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCcc-ce----------------------------eecCCCCceeEEEEEE---eC
Q 029158           19 PDLPEIAFAGRSNVGKSSMLNALTRQWG-VV----------------------------RTSDKPGLTQTINFFK---LG   66 (198)
Q Consensus        19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~-~~----------------------------~~~~~~~~t~~~~~~~---~~   66 (198)
                      ....+|+++|..++|||||+++|+.... +.                            ......+.|.+.....   .+
T Consensus         5 ~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~~   84 (426)
T TIGR00483         5 KEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETDK   84 (426)
T ss_pred             CceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccCC
Confidence            4557899999999999999999985210 00                            0111335565554332   35


Q ss_pred             CceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCC---CCcCcHHHHHHHHhhC-CcEEEEEecc
Q 029158           67 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG---VKPRDHELISLMERSQ-TKYQVVLTKT  142 (198)
Q Consensus        67 ~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~---~~~~~~~~~~~~~~~~-~p~iiv~nK~  142 (198)
                      ..+.+|||||+             ..+...++.....+|++++|+|++.+   ......+.+..+...+ .|+++|+||+
T Consensus        85 ~~i~iiDtpGh-------------~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~~~~iIVviNK~  151 (426)
T TIGR00483        85 YEVTIVDCPGH-------------RDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLGINQLIVAINKM  151 (426)
T ss_pred             eEEEEEECCCH-------------HHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcCCCeEEEEEECh
Confidence            78999999996             34455566666679999999999987   3344444444444444 4689999999


Q ss_pred             CCCC--cHHHHHHHHHHHHHHHhccC--CCCCcEEeccCCCCChHH
Q 029158          143 DTVF--PIDVARRAMQIEESLKANNS--LVQPVMMVSSKSGAGIRS  184 (198)
Q Consensus       143 Dl~~--~~~~~~~~~~~~~~~~~~~~--~~~~v~~~Sa~~~~gi~~  184 (198)
                      |+..  ....+...+++++.+.....  ...+++++||++|+|+++
T Consensus       152 Dl~~~~~~~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~  197 (426)
T TIGR00483       152 DSVNYDEEEFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIK  197 (426)
T ss_pred             hccCccHHHHHHHHHHHHHHHHHcCCCcccceEEEeeccccccccc
Confidence            9974  23344445555555544321  247899999999999986

This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.

>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.85  E-value=5.5e-20  Score=128.77  Aligned_cols=155  Identities=17%  Similarity=0.114  Sum_probs=111.3

Q ss_pred             CCCCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEE-------eCCceEEEeCCCCccccchhHHHHH
Q 029158           17 PAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK-------LGTKLCLVDLPGYGFAYAKEEVKDA   89 (198)
Q Consensus        17 ~~~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~-------~~~~~~iiDtpG~~~~~~~~~~~~~   89 (198)
                      +.....+|+++|.+|+|||+++-++....    .......|..+.+..       ....+++|||.|.          +.
T Consensus         8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~----f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQ----------er   73 (207)
T KOG0078|consen    8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDS----FNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQ----------ER   73 (207)
T ss_pred             CcceEEEEEEECCCCCchhHhhhhhhhcc----CcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccc----------hh
Confidence            44567899999999999999999999873    222223444433322       2457899999994          56


Q ss_pred             HHHHHHHHHhcccccceEEEEEeCCCCCCcC-cHHHHHHHHhh---CCcEEEEEeccCCCCcHHHH-HHHHHHHHHHHhc
Q 029158           90 WEELVKEYVSTRVSLKRVCLLIDTKWGVKPR-DHELISLMERS---QTKYQVVLTKTDTVFPIDVA-RRAMQIEESLKAN  164 (198)
Q Consensus        90 ~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~-~~~~~~~~~~~---~~p~iiv~nK~Dl~~~~~~~-~~~~~~~~~~~~~  164 (198)
                      +..+...|+..   |+++++|+|.....+-. -..|++.+.++   ++|.++|+||+|+.....+. +.-+.+...+   
T Consensus        74 f~ti~~sYyrg---A~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~---  147 (207)
T KOG0078|consen   74 FRTITTAYYRG---AMGILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEKRQVSKERGEALAREY---  147 (207)
T ss_pred             HHHHHHHHHhh---cCeeEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccccccccHHHHHHHHHHh---
Confidence            67778888887   89999999987633322 24467777654   68999999999998744322 1222222222   


Q ss_pred             cCCCCCcEEeccCCCCChHHHHHHHHHhhc
Q 029158          165 NSLVQPVMMVSSKSGAGIRSLRTVLSKIAR  194 (198)
Q Consensus       165 ~~~~~~v~~~Sa~~~~gi~~l~~~i~~~~~  194 (198)
                         +.+++++|||+|.|+++.+-.+.+.+.
T Consensus       148 ---G~~F~EtSAk~~~NI~eaF~~La~~i~  174 (207)
T KOG0078|consen  148 ---GIKFFETSAKTNFNIEEAFLSLARDIL  174 (207)
T ss_pred             ---CCeEEEccccCCCCHHHHHHHHHHHHH
Confidence               689999999999999999988877554

>TIGR01393 lepA GTP-binding protein LepA

Probab=99.85  E-value=5e-20  Score=151.46  Aligned_cols=158  Identities=20%  Similarity=0.212  Sum_probs=104.7

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCccc-------eeec------CCCCceeEEE---EEE---e--CCceEEEeCCCCcc
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQWGV-------VRTS------DKPGLTQTIN---FFK---L--GTKLCLVDLPGYGF   79 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~~~~-------~~~~------~~~~~t~~~~---~~~---~--~~~~~iiDtpG~~~   79 (198)
                      .++++++|..++|||||+++|+.....       ....      ...+.|....   +..   .  ...+.+|||||+.+
T Consensus         3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d   82 (595)
T TIGR01393         3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD   82 (595)
T ss_pred             eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence            568999999999999999999864210       0011      1124443322   211   1  25789999999732


Q ss_pred             ccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHH
Q 029158           80 AYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEE  159 (198)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~  159 (198)
                                +......++   ..+|++++|+|++++....+...+..+...+.|+++|+||+|+.... .....+.+.+
T Consensus        83 ----------F~~~v~~~l---~~aD~aILVvDat~g~~~qt~~~~~~~~~~~ipiIiViNKiDl~~~~-~~~~~~el~~  148 (595)
T TIGR01393        83 ----------FSYEVSRSL---AACEGALLLVDAAQGIEAQTLANVYLALENDLEIIPVINKIDLPSAD-PERVKKEIEE  148 (595)
T ss_pred             ----------HHHHHHHHH---HhCCEEEEEecCCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCCccC-HHHHHHHHHH
Confidence                      122222333   34899999999998877666665555555689999999999997532 1222334433


Q ss_pred             HHHhccCCCCCcEEeccCCCCChHHHHHHHHHhhcc
Q 029158          160 SLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIARF  195 (198)
Q Consensus       160 ~~~~~~~~~~~v~~~Sa~~~~gi~~l~~~i~~~~~~  195 (198)
                      .+.   .....++++||++|.|+++++++|.+.++.
T Consensus       149 ~lg---~~~~~vi~vSAktG~GI~~Lle~I~~~lp~  181 (595)
T TIGR01393       149 VIG---LDASEAILASAKTGIGIEEILEAIVKRVPP  181 (595)
T ss_pred             HhC---CCcceEEEeeccCCCCHHHHHHHHHHhCCC
Confidence            321   112358999999999999999999887653

LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=99.85  E-value=1.3e-20  Score=133.94  Aligned_cols=153  Identities=15%  Similarity=0.102  Sum_probs=95.0

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeE-----EEEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHH
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT-----INFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE   96 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~-----~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~   96 (198)
                      .+|+++|.+|+|||||++++.+...   ...+.+++..     .........+.+|||||..+          +..+...
T Consensus         2 ~kv~l~G~~g~GKTtl~~~~~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~----------~~~~~~~   68 (180)
T cd04137           2 RKIAVLGSRSVGKSSLTVQFVEGHF---VESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDE----------YSILPQK   68 (180)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCC---ccccCcchhhhEEEEEEECCEEEEEEEEECCChHh----------hHHHHHH
Confidence            4799999999999999999998731   2223333221     22222235678999999522          1222222


Q ss_pred             HHhcccccceEEEEEeCCCCCCcCc-HHHHHHHH----hhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCc
Q 029158           97 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLME----RSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPV  171 (198)
Q Consensus        97 ~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~----~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v  171 (198)
                      ++.   .++++++++|.++...... ..++..+.    ..+.|+++|+||+|+........  .........   ...++
T Consensus        69 ~~~---~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~--~~~~~~~~~---~~~~~  140 (180)
T cd04137          69 YSI---GIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVST--EEGKELAES---WGAAF  140 (180)
T ss_pred             HHh---hCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCH--HHHHHHHHH---cCCeE
Confidence            333   3889999999986322111 12222222    23679999999999975332111  111111111   13689


Q ss_pred             EEeccCCCCChHHHHHHHHHhhcc
Q 029158          172 MMVSSKSGAGIRSLRTVLSKIARF  195 (198)
Q Consensus       172 ~~~Sa~~~~gi~~l~~~i~~~~~~  195 (198)
                      +++||+++.|+.++++++.+.+..
T Consensus       141 ~~~Sa~~~~gv~~l~~~l~~~~~~  164 (180)
T cd04137         141 LESSARENENVEEAFELLIEEIEK  164 (180)
T ss_pred             EEEeCCCCCCHHHHHHHHHHHHHH
Confidence            999999999999999999887643

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>PLN03127 Elongation factor Tu; Provisional

Probab=99.85  E-value=7.3e-20  Score=145.94  Aligned_cols=162  Identities=20%  Similarity=0.254  Sum_probs=113.9

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcC------c-cce-------eecCCCCceeEEEEEE---eCCceEEEeCCCCccccc
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQ------W-GVV-------RTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYA   82 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~------~-~~~-------~~~~~~~~t~~~~~~~---~~~~~~iiDtpG~~~~~~   82 (198)
                      ...+|+++|..++|||||+++|.+.      . ...       ..+...++|.+.....   .+.++.++||||+     
T Consensus        60 ~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh-----  134 (447)
T PLN03127         60 PHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGH-----  134 (447)
T ss_pred             ceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCc-----
Confidence            4568999999999999999999732      0 000       1122356776654333   3568999999997     


Q ss_pred             hhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcE-EEEEeccCCCCcHHHHH-HHHHHHHH
Q 029158           83 KEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKY-QVVLTKTDTVFPIDVAR-RAMQIEES  160 (198)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~-iiv~nK~Dl~~~~~~~~-~~~~~~~~  160 (198)
                              ..++..+......+|++++|+|+..+....+.+++..+...++|. |+++||+|+.+..+..+ ..+++++.
T Consensus       135 --------~~f~~~~~~g~~~aD~allVVda~~g~~~qt~e~l~~~~~~gip~iIvviNKiDlv~~~~~~~~i~~~i~~~  206 (447)
T PLN03127        135 --------ADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVVFLNKVDVVDDEELLELVEMELREL  206 (447)
T ss_pred             --------cchHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEeeccCCHHHHHHHHHHHHHHH
Confidence                    234555555556699999999999988888889999998889994 78999999986544333 23355555


Q ss_pred             HHhcc--CCCCCcEEeccC---CCCC-------hHHHHHHHHHhhc
Q 029158          161 LKANN--SLVQPVMMVSSK---SGAG-------IRSLRTVLSKIAR  194 (198)
Q Consensus       161 ~~~~~--~~~~~v~~~Sa~---~~~g-------i~~l~~~i~~~~~  194 (198)
                      +....  ....|++++|+.   +|.|       +.+|++++.+.++
T Consensus       207 l~~~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp  252 (447)
T PLN03127        207 LSFYKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIP  252 (447)
T ss_pred             HHHhCCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCC
Confidence            44322  224789999885   4544       7888888887653

>cd00876 Ras Ras family

Probab=99.85  E-value=2.4e-20  Score=129.82  Aligned_cols=149  Identities=14%  Similarity=0.086  Sum_probs=94.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEE---EEEE--eCCceEEEeCCCCccccchhHHHHHHHHHHHHH
Q 029158           23 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---NFFK--LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY   97 (198)
Q Consensus        23 ~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~---~~~~--~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~   97 (198)
                      +|+++|++|+|||||++++++..   ....+.+++.+.   .+..  ....+.+||+||...          +......+
T Consensus         1 ki~i~G~~~~GKTsli~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~----------~~~~~~~~   67 (160)
T cd00876           1 KVVVLGAGGVGKSAITIQFVKGT---FVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEE----------FSAMRDLY   67 (160)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCC---CCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHH----------HHHHHHHH
Confidence            58999999999999999999873   233333333321   1111  135689999999522          22333333


Q ss_pred             HhcccccceEEEEEeCCCCCCcCc-HHHHHHHHh----hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcE
Q 029158           98 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVM  172 (198)
Q Consensus        98 ~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~----~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~  172 (198)
                      +..   +|++++|+|..+.....+ ..++..+..    .+.|+++|+||+|+.......  .+...+.....   ..+++
T Consensus        68 ~~~---~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~--~~~~~~~~~~~---~~~~~  139 (160)
T cd00876          68 IRQ---GDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVS--KEEGKALAKEW---GCPFI  139 (160)
T ss_pred             Hhc---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceec--HHHHHHHHHHc---CCcEE
Confidence            333   899999999876322111 222222221    369999999999998632211  12222222221   27899


Q ss_pred             EeccCCCCChHHHHHHHHHh
Q 029158          173 MVSSKSGAGIRSLRTVLSKI  192 (198)
Q Consensus       173 ~~Sa~~~~gi~~l~~~i~~~  192 (198)
                      ++||+++.|+++++++|.+.
T Consensus       140 ~~S~~~~~~i~~l~~~l~~~  159 (160)
T cd00876         140 ETSAKDNINIDEVFKLLVRE  159 (160)
T ss_pred             EeccCCCCCHHHHHHHHHhh
Confidence            99999999999999999865

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>cd04135 Tc10 TC10 subfamily

Probab=99.85  E-value=1.2e-20  Score=133.34  Aligned_cols=154  Identities=13%  Similarity=0.000  Sum_probs=93.8

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEE-----EEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHH
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI-----NFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE   96 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~-----~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~   96 (198)
                      .+|+++|++|+|||||++++++...   ...+.++..+.     ........+.+|||||....          ......
T Consensus         1 ~ki~i~G~~~~GKTsl~~~~~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----------~~~~~~   67 (174)
T cd04135           1 LKCVVVGDGAVGKTCLLMSYANDAF---PEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDY----------DRLRPL   67 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCC---CCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccc----------cccccc
Confidence            3799999999999999999998732   22233332221     11112345789999996331          111111


Q ss_pred             HHhcccccceEEEEEeCCCCCCcCc--HHHHHHHHh--hCCcEEEEEeccCCCCcHHHHHH----------HHHHHHHHH
Q 029158           97 YVSTRVSLKRVCLLIDTKWGVKPRD--HELISLMER--SQTKYQVVLTKTDTVFPIDVARR----------AMQIEESLK  162 (198)
Q Consensus        97 ~~~~~~~~d~vi~v~d~~~~~~~~~--~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~~~~~----------~~~~~~~~~  162 (198)
                      +   ...+|++++|+|..+.-.-..  ..++..+..  .+.|+++|+||+|+.+.......          .+..++...
T Consensus        68 ~---~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~  144 (174)
T cd04135          68 S---YPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAK  144 (174)
T ss_pred             c---CCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHH
Confidence            2   234799999999876322111  233444433  36999999999998654322110          111112211


Q ss_pred             hccCCCCCcEEeccCCCCChHHHHHHHHHhh
Q 029158          163 ANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA  193 (198)
Q Consensus       163 ~~~~~~~~v~~~Sa~~~~gi~~l~~~i~~~~  193 (198)
                      ..  ...+++++||++|.|++++++.+.+.+
T Consensus       145 ~~--~~~~~~e~Sa~~~~gi~~~f~~~~~~~  173 (174)
T cd04135         145 EI--GAHCYVECSALTQKGLKTVFDEAILAI  173 (174)
T ss_pred             Hc--CCCEEEEecCCcCCCHHHHHHHHHHHh
Confidence            11  124699999999999999999987653

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>cd04103 Centaurin_gamma Centaurin gamma

Probab=99.85  E-value=2.7e-20  Score=129.58  Aligned_cols=146  Identities=12%  Similarity=0.036  Sum_probs=91.1

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCce----eEEEEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHHH
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT----QTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY   97 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t----~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~   97 (198)
                      .+|+++|.+|+|||||+.+++......   .++++.    ....+......+.+|||+|...               ..+
T Consensus         1 ~ki~vvG~~gvGKTsli~~~~~~~f~~---~~~~~~~~~~~~i~~~~~~~~l~i~D~~g~~~---------------~~~   62 (158)
T cd04103           1 LKLGIVGNLQSGKSALVHRYLTGSYVQ---LESPEGGRFKKEVLVDGQSHLLLIRDEGGAPD---------------AQF   62 (158)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhCCCCC---CCCCCccceEEEEEECCEEEEEEEEECCCCCc---------------hhH
Confidence            379999999999999999988763211   122111    1122222235689999999631               122


Q ss_pred             HhcccccceEEEEEeCCCCCCcCc-HHHHHHHHh----hCCcEEEEEeccCCCCc--HHHHHHHHHHHHHHHhccCCCCC
Q 029158           98 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFP--IDVARRAMQIEESLKANNSLVQP  170 (198)
Q Consensus        98 ~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~----~~~p~iiv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~  170 (198)
                      +.   .+|++++|+|.++.-+-.. ..++..+..    .+.|+++|+||+|+...  .....  +..++ +... ...++
T Consensus        63 ~~---~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~--~~~~~-~~~~-~~~~~  135 (158)
T cd04103          63 AS---WVDAVIFVFSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDD--ARARQ-LCAD-MKRCS  135 (158)
T ss_pred             Hh---cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCH--HHHHH-HHHH-hCCCc
Confidence            22   3899999999987332222 234444443    24799999999998531  21111  11111 1111 11478


Q ss_pred             cEEeccCCCCChHHHHHHHHHh
Q 029158          171 VMMVSSKSGAGIRSLRTVLSKI  192 (198)
Q Consensus       171 v~~~Sa~~~~gi~~l~~~i~~~  192 (198)
                      ++++||++++|++++|+.+.+.
T Consensus       136 ~~e~SAk~~~~i~~~f~~~~~~  157 (158)
T cd04103         136 YYETCATYGLNVERVFQEAAQK  157 (158)
T ss_pred             EEEEecCCCCCHHHHHHHHHhh
Confidence            9999999999999999998754

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.

>PLN03108 Rab family protein; Provisional

Probab=99.85  E-value=1.3e-19  Score=131.87  Aligned_cols=156  Identities=16%  Similarity=0.098  Sum_probs=95.3

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeE---EEEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHH
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT---INFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE   96 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~---~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~   96 (198)
                      ...+|+++|++|+|||||++++++........+..+.+..   ..+......+.+|||||..          .+..+...
T Consensus         5 ~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~----------~~~~~~~~   74 (210)
T PLN03108          5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE----------SFRSITRS   74 (210)
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcH----------HHHHHHHH
Confidence            3578999999999999999999987321111111111111   1121223468899999951          12233333


Q ss_pred             HHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHh---hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcE
Q 029158           97 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVM  172 (198)
Q Consensus        97 ~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~---~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~  172 (198)
                      ++.   .+|++++|+|+....+... ..++..+..   ...|+++|+||+|+.......  .+..++....   ...+++
T Consensus        75 ~~~---~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~--~~~~~~~~~~---~~~~~~  146 (210)
T PLN03108         75 YYR---GAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVS--TEEGEQFAKE---HGLIFM  146 (210)
T ss_pred             Hhc---cCCEEEEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccCCC--HHHHHHHHHH---cCCEEE
Confidence            443   3899999999976322222 133333332   268999999999997532111  1111111111   146899


Q ss_pred             EeccCCCCChHHHHHHHHHhh
Q 029158          173 MVSSKSGAGIRSLRTVLSKIA  193 (198)
Q Consensus       173 ~~Sa~~~~gi~~l~~~i~~~~  193 (198)
                      ++||+++.|++++++++.+.+
T Consensus       147 e~Sa~~~~~v~e~f~~l~~~~  167 (210)
T PLN03108        147 EASAKTAQNVEEAFIKTAAKI  167 (210)
T ss_pred             EEeCCCCCCHHHHHHHHHHHH
Confidence            999999999999998887654

>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=99.85  E-value=3.1e-20  Score=133.70  Aligned_cols=143  Identities=14%  Similarity=0.079  Sum_probs=93.0

Q ss_pred             EcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE-----EE--EeCCceEEEeCCCCccccchhHHHHHHHHHHHHHHh
Q 029158           27 AGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN-----FF--KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS   99 (198)
Q Consensus        27 vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~-----~~--~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~   99 (198)
                      +|.+|+|||||+++++....   ...+.+ |....     +.  .....+.+|||+|.          +.+..+...|+.
T Consensus         1 vG~~~vGKTsLi~r~~~~~f---~~~~~~-Tig~~~~~~~~~~~~~~~~l~iwDt~G~----------e~~~~l~~~~~~   66 (200)
T smart00176        1 VGDGGTGKTTFVKRHLTGEF---EKKYVA-TLGVEVHPLVFHTNRGPIRFNVWDTAGQ----------EKFGGLRDGYYI   66 (200)
T ss_pred             CCCCCCCHHHHHHHHhcCCC---CCCCCC-ceeEEEEEEEEEECCEEEEEEEEECCCc----------hhhhhhhHHHhc
Confidence            69999999999999997631   222222 22211     11  12467899999995          222344444555


Q ss_pred             cccccceEEEEEeCCCCCCcCc-HHHHHHHHh--hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEecc
Q 029158          100 TRVSLKRVCLLIDTKWGVKPRD-HELISLMER--SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSS  176 (198)
Q Consensus       100 ~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa  176 (198)
                      .   +|++++|+|.++..+-.. ..|+..+..  .+.|+++|+||+|+....-..+   .. +...   ...++++++||
T Consensus        67 ~---ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~~v~~~---~~-~~~~---~~~~~~~e~SA  136 (200)
T smart00176       67 Q---GQCAIIMFDVTARVTYKNVPNWHRDLVRVCENIPIVLCGNKVDVKDRKVKAK---SI-TFHR---KKNLQYYDISA  136 (200)
T ss_pred             C---CCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccCCHH---HH-HHHH---HcCCEEEEEeC
Confidence            4   899999999987432222 235555554  3689999999999854211111   11 1111   22578999999


Q ss_pred             CCCCChHHHHHHHHHhh
Q 029158          177 KSGAGIRSLRTVLSKIA  193 (198)
Q Consensus       177 ~~~~gi~~l~~~i~~~~  193 (198)
                      ++|+|++++|++|...+
T Consensus       137 k~~~~v~~~F~~l~~~i  153 (200)
T smart00176      137 KSNYNFEKPFLWLARKL  153 (200)
T ss_pred             CCCCCHHHHHHHHHHHH
Confidence            99999999999998765

Ran is involved in the active transport of proteins through nuclear pores.

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=99.85  E-value=9.3e-20  Score=151.75  Aligned_cols=154  Identities=16%  Similarity=0.169  Sum_probs=105.6

Q ss_pred             CCCCCeEEEEcCCCCCHHHHHHHHhcCcccee-------------ec------------------CCCCceeEEE---EE
Q 029158           18 APDLPEIAFAGRSNVGKSSMLNALTRQWGVVR-------------TS------------------DKPGLTQTIN---FF   63 (198)
Q Consensus        18 ~~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~-------------~~------------------~~~~~t~~~~---~~   63 (198)
                      .....+|+++|.+++|||||+++|+.......             .+                  ...+.|.+..   +.
T Consensus        21 ~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~  100 (632)
T PRK05506         21 RKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFA  100 (632)
T ss_pred             CCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEc
Confidence            34456899999999999999999996521100             00                  0122333332   22


Q ss_pred             EeCCceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhC-CcEEEEEecc
Q 029158           64 KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQ-TKYQVVLTKT  142 (198)
Q Consensus        64 ~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~-~p~iiv~nK~  142 (198)
                      ..+.++.++||||+             ..+...+......+|++++|+|+..++...+.+.+..+...+ .++++++||+
T Consensus       101 ~~~~~~~liDtPG~-------------~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~~~~~iivvvNK~  167 (632)
T PRK05506        101 TPKRKFIVADTPGH-------------EQYTRNMVTGASTADLAIILVDARKGVLTQTRRHSFIASLLGIRHVVLAVNKM  167 (632)
T ss_pred             cCCceEEEEECCCh-------------HHHHHHHHHHHHhCCEEEEEEECCCCccccCHHHHHHHHHhCCCeEEEEEEec
Confidence            23568999999996             333444555666799999999999988888888777777666 5688999999


Q ss_pred             CCCCc--HHHHHHHHHHHHHHHhccCCCCCcEEeccCCCCChHH
Q 029158          143 DTVFP--IDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRS  184 (198)
Q Consensus       143 Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~~~gi~~  184 (198)
                      |+...  ...++....+.+.+........+++++||++|+|+++
T Consensus       168 D~~~~~~~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~  211 (632)
T PRK05506        168 DLVDYDQEVFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT  211 (632)
T ss_pred             ccccchhHHHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence            99752  2233444455444443333346899999999999874

>cd01892 Miro2 Miro2 subfamily

Probab=99.85  E-value=2.8e-20  Score=130.96  Aligned_cols=154  Identities=18%  Similarity=0.093  Sum_probs=94.9

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeE------EEEEEeCCceEEEeCCCCccccchhHHHHHHHHH
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT------INFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEEL   93 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~------~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~   93 (198)
                      +..+|+++|.+|+|||||++++++... . ...+.+|+..      ..+......+.+||++|....          ..+
T Consensus         3 ~~~kv~~vG~~~vGKTsli~~~~~~~f-~-~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~----------~~~   70 (169)
T cd01892           3 NVFLCFVLGAKGSGKSALLRAFLGRSF-S-LNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVA----------ILL   70 (169)
T ss_pred             eEEEEEEECCCCCcHHHHHHHHhCCCC-C-cccCCCccCcceEEEEEEECCeEEEEEEEecCCcccc----------ccc
Confidence            356899999999999999999998732 1 1334444321      111111246889999995321          112


Q ss_pred             HHHHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHH-hhCCcEEEEEeccCCCCcHHHH-HHHHHHHHHHHhccCCCCC
Q 029158           94 VKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLME-RSQTKYQVVLTKTDTVFPIDVA-RRAMQIEESLKANNSLVQP  170 (198)
Q Consensus        94 ~~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~-~~~~p~iiv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~  170 (198)
                      ...++   ..+|++++|+|+++...... .+++..+. ..+.|+++|+||+|+....... ...+.+.+.+    + ..+
T Consensus        71 ~~~~~---~~~d~~llv~d~~~~~s~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~----~-~~~  142 (169)
T cd01892          71 NDAEL---AACDVACLVYDSSDPKSFSYCAEVYKKYFMLGEIPCLFVAAKADLDEQQQRYEVQPDEFCRKL----G-LPP  142 (169)
T ss_pred             chhhh---hcCCEEEEEEeCCCHHHHHHHHHHHHHhccCCCCeEEEEEEcccccccccccccCHHHHHHHc----C-CCC
Confidence            22233   23999999999976311111 13333332 2368999999999996543210 1112222221    1 124


Q ss_pred             cEEeccCCCCChHHHHHHHHHhh
Q 029158          171 VMMVSSKSGAGIRSLRTVLSKIA  193 (198)
Q Consensus       171 v~~~Sa~~~~gi~~l~~~i~~~~  193 (198)
                      ++++||++++|++++++.+.+.+
T Consensus       143 ~~~~Sa~~~~~v~~lf~~l~~~~  165 (169)
T cd01892         143 PLHFSSKLGDSSNELFTKLATAA  165 (169)
T ss_pred             CEEEEeccCccHHHHHHHHHHHh
Confidence            68999999999999999998765

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.85  E-value=5.5e-20  Score=144.70  Aligned_cols=160  Identities=20%  Similarity=0.286  Sum_probs=121.2

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEe------CCceEEEeCCCCccccchhHHHHHHHH
Q 029158           19 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL------GTKLCLVDLPGYGFAYAKEEVKDAWEE   92 (198)
Q Consensus        19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~------~~~~~iiDtpG~~~~~~~~~~~~~~~~   92 (198)
                      .+.|.|.++|+...|||||+..+-+. .++ .....+.|+-+.-+..      ...++|+||||+             ..
T Consensus         3 ~R~PvVtimGHVDHGKTtLLD~IR~t-~Va-~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGH-------------eA   67 (509)
T COG0532           3 LRPPVVTIMGHVDHGKTTLLDKIRKT-NVA-AGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGH-------------EA   67 (509)
T ss_pred             CCCCEEEEeCcccCCccchhhhHhcC-ccc-cccCCceeeEeeeEEEEeccCCCceEEEEcCCcH-------------HH
Confidence            46788999999999999999999887 333 3333456665432222      268999999996             44


Q ss_pred             HHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHH--HHHhccCCCCC
Q 029158           93 LVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEE--SLKANNSLVQP  170 (198)
Q Consensus        93 ~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~--~~~~~~~~~~~  170 (198)
                      +...--++...+|.+++|+++.+++..++.+.++.++..++|+++++||+|.++.+. .....++++  .....++....
T Consensus        68 Ft~mRaRGa~vtDIaILVVa~dDGv~pQTiEAI~hak~a~vP~iVAiNKiDk~~~np-~~v~~el~~~gl~~E~~gg~v~  146 (509)
T COG0532          68 FTAMRARGASVTDIAILVVAADDGVMPQTIEAINHAKAAGVPIVVAINKIDKPEANP-DKVKQELQEYGLVPEEWGGDVI  146 (509)
T ss_pred             HHHHHhcCCccccEEEEEEEccCCcchhHHHHHHHHHHCCCCEEEEEecccCCCCCH-HHHHHHHHHcCCCHhhcCCceE
Confidence            444444566779999999999999999999999999999999999999999996532 233333332  22233444578


Q ss_pred             cEEeccCCCCChHHHHHHHHHhhc
Q 029158          171 VMMVSSKSGAGIRSLRTVLSKIAR  194 (198)
Q Consensus       171 v~~~Sa~~~~gi~~l~~~i~~~~~  194 (198)
                      ++++||++|+|+++|++.+.-..+
T Consensus       147 ~VpvSA~tg~Gi~eLL~~ill~ae  170 (509)
T COG0532         147 FVPVSAKTGEGIDELLELILLLAE  170 (509)
T ss_pred             EEEeeccCCCCHHHHHHHHHHHHH
Confidence            999999999999999998865543

>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA

Probab=99.84  E-value=7.3e-20  Score=150.17  Aligned_cols=160  Identities=21%  Similarity=0.238  Sum_probs=112.5

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCccce-e-------------ecCCCCceeEE---EEEEeCCceEEEeCCCCccccchh
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQWGVV-R-------------TSDKPGLTQTI---NFFKLGTKLCLVDLPGYGFAYAKE   84 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~~~~~-~-------------~~~~~~~t~~~---~~~~~~~~~~iiDtpG~~~~~~~~   84 (198)
                      ++|+++|+.++|||||+++|+...... .             .....+.|...   .+.+.+..+.+|||||+       
T Consensus         2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh-------   74 (594)
T TIGR01394         2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGH-------   74 (594)
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCH-------
Confidence            579999999999999999998641100 0             01122344332   34445788999999997       


Q ss_pred             HHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhc
Q 029158           85 EVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKAN  164 (198)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~  164 (198)
                            .++..+.......+|++++|+|+..+.......++..+...++|+++|+||+|+.... ..+....+.+.+...
T Consensus        75 ------~DF~~ev~~~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~~~ip~IVviNKiD~~~a~-~~~v~~ei~~l~~~~  147 (594)
T TIGR01394        75 ------ADFGGEVERVLGMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPSAR-PDEVVDEVFDLFAEL  147 (594)
T ss_pred             ------HHHHHHHHHHHHhCCEEEEEEeCCCCCcHHHHHHHHHHHHCCCCEEEEEECCCCCCcC-HHHHHHHHHHHHHhh
Confidence                  2233333444445999999999999887778888888888899999999999997532 223334444433221


Q ss_pred             ----cCCCCCcEEeccCCCC----------ChHHHHHHHHHhhcc
Q 029158          165 ----NSLVQPVMMVSSKSGA----------GIRSLRTVLSKIARF  195 (198)
Q Consensus       165 ----~~~~~~v~~~Sa~~~~----------gi~~l~~~i~~~~~~  195 (198)
                          .....|++++||++|.          |++.|++.|.+.++.
T Consensus       148 g~~~e~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~  192 (594)
T TIGR01394       148 GADDEQLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPA  192 (594)
T ss_pred             ccccccccCcEEechhhcCcccccCcccccCHHHHHHHHHHhCCC
Confidence                1124789999999996          899999999988764

This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.

>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily

Probab=99.84  E-value=8e-20  Score=133.33  Aligned_cols=152  Identities=14%  Similarity=0.096  Sum_probs=93.8

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeE-----EEEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHH
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT-----INFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE   96 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~-----~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~   96 (198)
                      .+|+++|.+|+|||||+.++.+...   ...+.+|...     ..+......+.+|||+|..          .+..+...
T Consensus         2 ~KIvvvGd~~vGKTsLi~~~~~~~f---~~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e----------~~~~l~~~   68 (222)
T cd04173           2 CKIVVVGDAECGKTALLQVFAKDAY---PGSYVPTVFENYTASFEIDKRRIELNMWDTSGSS----------YYDNVRPL   68 (222)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCC---CCccCCccccceEEEEEECCEEEEEEEEeCCCcH----------HHHHHhHH
Confidence            5799999999999999999998732   2233333211     1222234678999999952          22333333


Q ss_pred             HHhcccccceEEEEEeCCCCCCcCc--HHHHHHHHh--hCCcEEEEEeccCCCCcHH-HHHH---------HHHHHHHHH
Q 029158           97 YVSTRVSLKRVCLLIDTKWGVKPRD--HELISLMER--SQTKYQVVLTKTDTVFPID-VARR---------AMQIEESLK  162 (198)
Q Consensus        97 ~~~~~~~~d~vi~v~d~~~~~~~~~--~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~-~~~~---------~~~~~~~~~  162 (198)
                      ++.   .+|++++|+|.++..+-..  ..|...+..  .+.|+++|+||+|+..... ....         .++.+. +.
T Consensus        69 ~~~---~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~-~a  144 (222)
T cd04173          69 AYP---DSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTV-LA  144 (222)
T ss_pred             hcc---CCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHH-HH
Confidence            433   4899999999987422222  123333322  2689999999999975321 1110         011111 11


Q ss_pred             hccCCC-CCcEEeccCCCCC-hHHHHHHHHHh
Q 029158          163 ANNSLV-QPVMMVSSKSGAG-IRSLRTVLSKI  192 (198)
Q Consensus       163 ~~~~~~-~~v~~~Sa~~~~g-i~~l~~~i~~~  192 (198)
                      .  ..+ .+++++||+++++ ++++|+.+...
T Consensus       145 k--~~~~~~y~E~SAk~~~~~V~~~F~~~~~~  174 (222)
T cd04173         145 K--QVGAVSYVECSSRSSERSVRDVFHVATVA  174 (222)
T ss_pred             H--HcCCCEEEEcCCCcCCcCHHHHHHHHHHH
Confidence            1  113 4899999999985 99999988764

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma

>PTZ00141 elongation factor 1- alpha; Provisional

Probab=99.84  E-value=9.9e-20  Score=145.36  Aligned_cols=160  Identities=18%  Similarity=0.221  Sum_probs=115.9

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCccc-e----------------------------eecCCCCceeEEEEEE---eC
Q 029158           19 PDLPEIAFAGRSNVGKSSMLNALTRQWGV-V----------------------------RTSDKPGLTQTINFFK---LG   66 (198)
Q Consensus        19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~~-~----------------------------~~~~~~~~t~~~~~~~---~~   66 (198)
                      ....+|+++|..++|||||+.+|+..... .                            ......+.|.+..+..   .+
T Consensus         5 k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~   84 (446)
T PTZ00141          5 KTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK   84 (446)
T ss_pred             CceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCC
Confidence            34568999999999999999999852100 0                            0011234555544333   35


Q ss_pred             CceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCC-------CcCcHHHHHHHHhhCCc-EEEE
Q 029158           67 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGV-------KPRDHELISLMERSQTK-YQVV  138 (198)
Q Consensus        67 ~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~-------~~~~~~~~~~~~~~~~p-~iiv  138 (198)
                      ..+.|+||||+             .++..++......+|++++|+|+..|.       .....+++..+...++| +|++
T Consensus        85 ~~i~lIDtPGh-------------~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~gi~~iiv~  151 (446)
T PTZ00141         85 YYFTIIDAPGH-------------RDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTLGVKQMIVC  151 (446)
T ss_pred             eEEEEEECCCh-------------HHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHcCCCeEEEE
Confidence            68999999997             566777888888899999999999876       35667888888888887 5789


Q ss_pred             EeccCCCC----cHHHHHHHHHHHHHHHhccC--CCCCcEEeccCCCCChHH------------HHHHHHH
Q 029158          139 LTKTDTVF----PIDVARRAMQIEESLKANNS--LVQPVMMVSSKSGAGIRS------------LRTVLSK  191 (198)
Q Consensus       139 ~nK~Dl~~----~~~~~~~~~~~~~~~~~~~~--~~~~v~~~Sa~~~~gi~~------------l~~~i~~  191 (198)
                      +||+|...    ....++..+.+++.+.....  ...+++++|+.+|+|+.+            |++.|..
T Consensus       152 vNKmD~~~~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~~~~~~~Wy~G~tL~~~l~~  222 (446)
T PTZ00141        152 INKMDDKTVNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIEKSDNMPWYKGPTLLEALDT  222 (446)
T ss_pred             EEccccccchhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCcccCCCCCcccchHHHHHHHhC
Confidence            99999532    34556667777776664432  258899999999999964            7777654

>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional

Probab=99.84  E-value=9.9e-20  Score=146.37  Aligned_cols=154  Identities=18%  Similarity=0.177  Sum_probs=105.0

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCcccee-------------ec------------------CCCCceeEEEEE---E
Q 029158           19 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVR-------------TS------------------DKPGLTQTINFF---K   64 (198)
Q Consensus        19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~-------------~~------------------~~~~~t~~~~~~---~   64 (198)
                      ....+|+++|.+++|||||+++|+.......             .+                  ...+.|.+..+.   .
T Consensus        25 ~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~  104 (474)
T PRK05124         25 KSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFST  104 (474)
T ss_pred             cCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEecc
Confidence            4567999999999999999999986521100             00                  012234444322   2


Q ss_pred             eCCceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhC-CcEEEEEeccC
Q 029158           65 LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQ-TKYQVVLTKTD  143 (198)
Q Consensus        65 ~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~-~p~iiv~nK~D  143 (198)
                      .+.++.|+||||+             ..+..........+|++++|+|+..++...+.+.+..+...+ .|+|+++||+|
T Consensus       105 ~~~~i~~iDTPGh-------------~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~lg~~~iIvvvNKiD  171 (474)
T PRK05124        105 EKRKFIIADTPGH-------------EQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATLLGIKHLVVAVNKMD  171 (474)
T ss_pred             CCcEEEEEECCCc-------------HHHHHHHHHHHhhCCEEEEEEECCCCccccchHHHHHHHHhCCCceEEEEEeec
Confidence            3578999999996             344445555567799999999999988887777766666655 46889999999


Q ss_pred             CCCcH--HHHHHHHHHHHHHHhcc-CCCCCcEEeccCCCCChHHH
Q 029158          144 TVFPI--DVARRAMQIEESLKANN-SLVQPVMMVSSKSGAGIRSL  185 (198)
Q Consensus       144 l~~~~--~~~~~~~~~~~~~~~~~-~~~~~v~~~Sa~~~~gi~~l  185 (198)
                      +....  ...+..+.+...+.... ....+++++||++|+|++++
T Consensus       172 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~  216 (474)
T PRK05124        172 LVDYSEEVFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ  216 (474)
T ss_pred             cccchhHHHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence            98532  23334444444333222 23578999999999999764

>PRK05433 GTP-binding protein LepA; Provisional

Probab=99.84  E-value=8.6e-20  Score=150.19  Aligned_cols=160  Identities=19%  Similarity=0.218  Sum_probs=106.1

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCccc-e------ee------cCCCCceeEE---EEEE-----eCCceEEEeCCCC
Q 029158           19 PDLPEIAFAGRSNVGKSSMLNALTRQWGV-V------RT------SDKPGLTQTI---NFFK-----LGTKLCLVDLPGY   77 (198)
Q Consensus        19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~~-~------~~------~~~~~~t~~~---~~~~-----~~~~~~iiDtpG~   77 (198)
                      ...++++++|..++|||||+.+|+..... .      ..      ....+.|...   .+..     .+..+.+|||||+
T Consensus         5 ~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh   84 (600)
T PRK05433          5 KNIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGH   84 (600)
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCc
Confidence            45678999999999999999999863100 0      00      1112333321   1211     1467899999997


Q ss_pred             ccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHH
Q 029158           78 GFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQI  157 (198)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~  157 (198)
                      .+          +......++   ..+|++++|+|++++....+...+..+...+.|+++|+||+|+.... .....+.+
T Consensus        85 ~d----------F~~~v~~sl---~~aD~aILVVDas~gv~~qt~~~~~~~~~~~lpiIvViNKiDl~~a~-~~~v~~ei  150 (600)
T PRK05433         85 VD----------FSYEVSRSL---AACEGALLVVDASQGVEAQTLANVYLALENDLEIIPVLNKIDLPAAD-PERVKQEI  150 (600)
T ss_pred             HH----------HHHHHHHHH---HHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCccc-HHHHHHHH
Confidence            32          122222333   34899999999999877666666666666689999999999997532 22223334


Q ss_pred             HHHHHhccCCCCCcEEeccCCCCChHHHHHHHHHhhcc
Q 029158          158 EESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIARF  195 (198)
Q Consensus       158 ~~~~~~~~~~~~~v~~~Sa~~~~gi~~l~~~i~~~~~~  195 (198)
                      ++.+.   .....++++||++|.|+++++++|.+.++.
T Consensus       151 ~~~lg---~~~~~vi~iSAktG~GI~~Ll~~I~~~lp~  185 (600)
T PRK05433        151 EDVIG---IDASDAVLVSAKTGIGIEEVLEAIVERIPP  185 (600)
T ss_pred             HHHhC---CCcceEEEEecCCCCCHHHHHHHHHHhCcc
Confidence            33321   112348999999999999999999887653

>PLN03126 Elongation factor Tu; Provisional

Probab=99.84  E-value=2.1e-19  Score=144.08  Aligned_cols=149  Identities=20%  Similarity=0.244  Sum_probs=109.1

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCcc--------------ceeecCCCCceeEEE---EEEeCCceEEEeCCCCcccc
Q 029158           19 PDLPEIAFAGRSNVGKSSMLNALTRQWG--------------VVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAY   81 (198)
Q Consensus        19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~--------------~~~~~~~~~~t~~~~---~~~~~~~~~iiDtpG~~~~~   81 (198)
                      ....+|+++|.+++|||||+++|++...              ........+.|.+..   +...+..+.++||||+    
T Consensus        79 k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh----  154 (478)
T PLN03126         79 KPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGH----  154 (478)
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCH----
Confidence            3456799999999999999999996310              001122344555543   2234678999999997    


Q ss_pred             chhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCc-EEEEEeccCCCCcHHH-HHHHHHHHH
Q 029158           82 AKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKTDTVFPIDV-ARRAMQIEE  159 (198)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~~~~-~~~~~~~~~  159 (198)
                               ..+..+++.....+|++++|+|+..+....+.+++..+...++| +|+++||+|+.+.++. +...+++.+
T Consensus       155 ---------~~f~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~  225 (478)
T PLN03126        155 ---------ADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLELVELEVRE  225 (478)
T ss_pred             ---------HHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEecccccCHHHHHHHHHHHHHH
Confidence                     45666777777789999999999999888888888888888898 7789999999875543 334446666


Q ss_pred             HHHhcc--CCCCCcEEeccCCCC
Q 029158          160 SLKANN--SLVQPVMMVSSKSGA  180 (198)
Q Consensus       160 ~~~~~~--~~~~~v~~~Sa~~~~  180 (198)
                      .+....  ....|++++|+.++.
T Consensus       226 ~l~~~g~~~~~~~~vp~Sa~~g~  248 (478)
T PLN03126        226 LLSSYEFPGDDIPIISGSALLAL  248 (478)
T ss_pred             HHHhcCCCcCcceEEEEEccccc
Confidence            665532  236889999998874

>COG2262 HflX GTPases [General function prediction only]

Probab=99.84  E-value=1.1e-19  Score=138.86  Aligned_cols=162  Identities=20%  Similarity=0.244  Sum_probs=110.0

Q ss_pred             CCCCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEE----eCCceEEEeCCCCccccchhHHHHHHHH
Q 029158           17 PAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK----LGTKLCLVDLPGYGFAYAKEEVKDAWEE   92 (198)
Q Consensus        17 ~~~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~----~~~~~~iiDtpG~~~~~~~~~~~~~~~~   92 (198)
                      ..+..|.|+++|.+|+|||||+|+|.+..  ....+....|-+.+...    .+.++.+-||-||.... +++.-+.|..
T Consensus       188 ~~~~~p~vaLvGYTNAGKSTL~N~LT~~~--~~~~d~LFATLdpttR~~~l~~g~~vlLtDTVGFI~~L-P~~LV~AFks  264 (411)
T COG2262         188 SRSGIPLVALVGYTNAGKSTLFNALTGAD--VYVADQLFATLDPTTRRIELGDGRKVLLTDTVGFIRDL-PHPLVEAFKS  264 (411)
T ss_pred             cccCCCeEEEEeeccccHHHHHHHHhccC--eeccccccccccCceeEEEeCCCceEEEecCccCcccC-ChHHHHHHHH
Confidence            45678999999999999999999999874  44455555554433222    25789999999986643 3333344443


Q ss_pred             HHHHHHhcccccceEEEEEeCCCCCCcCcHH-HHHHHHh---hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCC
Q 029158           93 LVKEYVSTRVSLKRVCLLIDTKWGVKPRDHE-LISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLV  168 (198)
Q Consensus        93 ~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~~---~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  168 (198)
                      .+.    ....+|+++.|+|++++......+ ..+.+.+   ...|+|+|+||+|+......   ...    ....   .
T Consensus       265 TLE----E~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~~---~~~----~~~~---~  330 (411)
T COG2262         265 TLE----EVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEEI---LAE----LERG---S  330 (411)
T ss_pred             HHH----HhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchhh---hhh----hhhc---C
Confidence            333    334589999999999853222222 2233333   46899999999999876541   111    1111   1


Q ss_pred             CCcEEeccCCCCChHHHHHHHHHhhcc
Q 029158          169 QPVMMVSSKSGAGIRSLRTVLSKIARF  195 (198)
Q Consensus       169 ~~v~~~Sa~~~~gi~~l~~~i~~~~~~  195 (198)
                      ...+++||++|+|++.|.+.|.+.+..
T Consensus       331 ~~~v~iSA~~~~gl~~L~~~i~~~l~~  357 (411)
T COG2262         331 PNPVFISAKTGEGLDLLRERIIELLSG  357 (411)
T ss_pred             CCeEEEEeccCcCHHHHHHHHHHHhhh
Confidence            158999999999999999999987763

>cd04168 TetM_like Tet(M)-like subfamily

Probab=99.84  E-value=1.1e-19  Score=134.04  Aligned_cols=158  Identities=23%  Similarity=0.279  Sum_probs=106.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCccc----eeec------C------CCCceeE---EEEEEeCCceEEEeCCCCccccch
Q 029158           23 EIAFAGRSNVGKSSMLNALTRQWGV----VRTS------D------KPGLTQT---INFFKLGTKLCLVDLPGYGFAYAK   83 (198)
Q Consensus        23 ~v~~vG~~~~GKSsli~~l~~~~~~----~~~~------~------~~~~t~~---~~~~~~~~~~~iiDtpG~~~~~~~   83 (198)
                      +|+++|.+|+|||||+++|+.....    ..+.      +      ..+.+..   ..+...+.++.+|||||+.+    
T Consensus         1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~----   76 (237)
T cd04168           1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMD----   76 (237)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccc----
Confidence            4899999999999999999864210    0000      0      1112222   22334467899999999742    


Q ss_pred             hHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHh
Q 029158           84 EEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKA  163 (198)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~  163 (198)
                               +..+.......+|++++|+|+.++.......++..+...++|+++++||+|+.... .++..+.+++.+..
T Consensus        77 ---------f~~~~~~~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~~~~P~iivvNK~D~~~a~-~~~~~~~i~~~~~~  146 (237)
T cd04168          77 ---------FIAEVERSLSVLDGAILVISAVEGVQAQTRILWRLLRKLNIPTIIFVNKIDRAGAD-LEKVYQEIKEKLSS  146 (237)
T ss_pred             ---------hHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccccCCC-HHHHHHHHHHHHCC
Confidence                     11222233344899999999999877666777888888899999999999997532 23333333333221


Q ss_pred             ----------------------------------------------------------ccCCCCCcEEeccCCCCChHHH
Q 029158          164 ----------------------------------------------------------NNSLVQPVMMVSSKSGAGIRSL  185 (198)
Q Consensus       164 ----------------------------------------------------------~~~~~~~v~~~Sa~~~~gi~~l  185 (198)
                                                                                ..+...|++..||.++.|+..|
T Consensus       147 ~~~~~~~p~~~~~~~~~~~~~~~l~e~vae~dd~l~e~yl~~~~~~~~el~~~l~~~~~~~~~~Pv~~gsa~~~~Gv~~l  226 (237)
T cd04168         147 DIVPMQKVGLAPNICETNEIDDEFWETLAEGDDELLEKYLEGGPIEELELDNELSARIAKRKVFPVYHGSALKGIGIEEL  226 (237)
T ss_pred             CeEEEECCcEeeeeeeeeeccHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCeEEEEEccccCCcCHHHH
Confidence                                                                      0111367888899999999999


Q ss_pred             HHHHHHhhc
Q 029158          186 RTVLSKIAR  194 (198)
Q Consensus       186 ~~~i~~~~~  194 (198)
                      ++.|.+.++
T Consensus       227 l~~~~~~~p  235 (237)
T cd04168         227 LEGITKLFP  235 (237)
T ss_pred             HHHHHHhcC
Confidence            999998775

Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.

>PRK10218 GTP-binding protein; Provisional

Probab=99.83  E-value=2.9e-19  Score=146.59  Aligned_cols=163  Identities=19%  Similarity=0.154  Sum_probs=111.9

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCcc-cee-------------ecCCCCceeEEE---EEEeCCceEEEeCCCCcccc
Q 029158           19 PDLPEIAFAGRSNVGKSSMLNALTRQWG-VVR-------------TSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAY   81 (198)
Q Consensus        19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~-~~~-------------~~~~~~~t~~~~---~~~~~~~~~iiDtpG~~~~~   81 (198)
                      ....+|+++|..++|||||+++|+.... +..             .....+.|....   +...+..+.+|||||+.+- 
T Consensus         3 ~~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df-   81 (607)
T PRK10218          3 EKLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADF-   81 (607)
T ss_pred             CCceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchh-
Confidence            3567899999999999999999996311 000             011233343322   3334678999999997331 


Q ss_pred             chhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHH
Q 029158           82 AKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESL  161 (198)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~  161 (198)
                                  ..........+|++++|+|+..+....+..++..+...++|.++++||+|+.... .....+.+.+.+
T Consensus        82 ------------~~~v~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~~gip~IVviNKiD~~~a~-~~~vl~ei~~l~  148 (607)
T PRK10218         82 ------------GGEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAYGLKPIVVINKVDRPGAR-PDWVVDQVFDLF  148 (607)
T ss_pred             ------------HHHHHHHHHhCCEEEEEEecccCccHHHHHHHHHHHHcCCCEEEEEECcCCCCCc-hhHHHHHHHHHH
Confidence                        1122222344999999999999877777778888888899999999999997542 223334444443


Q ss_pred             Hhc----cCCCCCcEEeccCCCC----------ChHHHHHHHHHhhcc
Q 029158          162 KAN----NSLVQPVMMVSSKSGA----------GIRSLRTVLSKIARF  195 (198)
Q Consensus       162 ~~~----~~~~~~v~~~Sa~~~~----------gi~~l~~~i~~~~~~  195 (198)
                      ...    ....+|++++||++|.          |+..|++.|.++++.
T Consensus       149 ~~l~~~~~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~  196 (607)
T PRK10218        149 VNLDATDEQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPA  196 (607)
T ss_pred             hccCccccccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCCC
Confidence            221    1224889999999998          688999998887753

>COG0536 Obg Predicted GTPase [General function prediction only]

Probab=99.83  E-value=1.9e-19  Score=134.45  Aligned_cols=160  Identities=19%  Similarity=0.226  Sum_probs=113.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE---EE-EeCCceEEEeCCCCccccchhHHHHHHHHHHHHHH
Q 029158           23 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FF-KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV   98 (198)
Q Consensus        23 ~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~---~~-~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~   98 (198)
                      -|.+||.|++|||||++.+...+  ..+.+|+.||.-..   +. .....+++-|.||+.+..+..      .-+-.+|+
T Consensus       161 DVGLVG~PNaGKSTlls~vS~Ak--PKIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G------~GLG~~FL  232 (369)
T COG0536         161 DVGLVGLPNAGKSTLLSAVSAAK--PKIADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASEG------VGLGLRFL  232 (369)
T ss_pred             ccccccCCCCcHHHHHHHHhhcC--CcccCCccccccCcccEEEecCCCcEEEecCcccccccccC------CCccHHHH
Confidence            58899999999999999999985  88999999997643   22 235679999999998765433      22334666


Q ss_pred             hcccccceEEEEEeCCCCCC---cCc-HHHHHHHHhh-----CCcEEEEEeccCCCCc-HHHHHHHHHHHHHHHhccCCC
Q 029158           99 STRVSLKRVCLLIDTKWGVK---PRD-HELISLMERS-----QTKYQVVLTKTDTVFP-IDVARRAMQIEESLKANNSLV  168 (198)
Q Consensus        99 ~~~~~~d~vi~v~d~~~~~~---~~~-~~~~~~~~~~-----~~p~iiv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~  168 (198)
                      ++...+.++++|+|.+..-.   ..+ ..+...+..+     ++|.++|+||+|+... ++.++..+.+++...     .
T Consensus       233 rHIERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~-----~  307 (369)
T COG0536         233 RHIERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALG-----W  307 (369)
T ss_pred             HHHHhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcC-----C
Confidence            66667899999999986322   111 2223444332     6899999999996544 455555555554422     2


Q ss_pred             CCcEEeccCCCCChHHHHHHHHHhhcc
Q 029158          169 QPVMMVSSKSGAGIRSLRTVLSKIARF  195 (198)
Q Consensus       169 ~~v~~~Sa~~~~gi~~l~~~i~~~~~~  195 (198)
                      ....++||.+++|+++|...+.+.+..
T Consensus       308 ~~~~~ISa~t~~g~~~L~~~~~~~l~~  334 (369)
T COG0536         308 EVFYLISALTREGLDELLRALAELLEE  334 (369)
T ss_pred             CcceeeehhcccCHHHHHHHHHHHHHH
Confidence            223339999999999999998887654

>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]

Probab=99.83  E-value=4.5e-20  Score=143.37  Aligned_cols=165  Identities=25%  Similarity=0.277  Sum_probs=118.2

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEE---EEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHHH
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---NFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY   97 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~---~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~   97 (198)
                      .+.|+++|+||+|||||+|+|.+. .+..+++.++||+|.   .+.-.+.++.++||+|+.+.. .+..+   ..-+++.
T Consensus       268 gl~iaIvGrPNvGKSSLlNaL~~~-drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~-~~~iE---~~gI~rA  342 (531)
T KOG1191|consen  268 GLQIAIVGRPNVGKSSLLNALSRE-DRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREES-NDGIE---ALGIERA  342 (531)
T ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC-CceEeCCCCCcchhhheeEeecCCeEEEEEecccccccc-CChhH---HHhHHHH
Confidence            478999999999999999999998 789999999999984   354558899999999986611 11111   1123344


Q ss_pred             HhcccccceEEEEEeCCCCCCcCcHHHHHHHHhh------------CCcEEEEEeccCCCCcHHHH-H-HHHHHHHHHHh
Q 029158           98 VSTRVSLKRVCLLIDTKWGVKPRDHELISLMERS------------QTKYQVVLTKTDTVFPIDVA-R-RAMQIEESLKA  163 (198)
Q Consensus        98 ~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~------------~~p~iiv~nK~Dl~~~~~~~-~-~~~~~~~~~~~  163 (198)
                      ......+|++++|+|+.....+.+..+.+.+...            ..|++++.||.|+.++.... . .....+.    
T Consensus       343 ~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~~----  418 (531)
T KOG1191|consen  343 RKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVYPSA----  418 (531)
T ss_pred             HHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCceecccc----
Confidence            4555569999999999887788887766666532            26889999999998763211 1 0111111    


Q ss_pred             ccCCC-CCcEEeccCCCCChHHHHHHHHHhhc
Q 029158          164 NNSLV-QPVMMVSSKSGAGIRSLRTVLSKIAR  194 (198)
Q Consensus       164 ~~~~~-~~v~~~Sa~~~~gi~~l~~~i~~~~~  194 (198)
                      ..... ..+.++|+++++|+++|.+.+.+.+.
T Consensus       419 ~~~~~~~i~~~vs~~tkeg~~~L~~all~~~~  450 (531)
T KOG1191|consen  419 EGRSVFPIVVEVSCTTKEGCERLSTALLNIVE  450 (531)
T ss_pred             ccCcccceEEEeeechhhhHHHHHHHHHHHHH
Confidence            11112 34556999999999999999887654

>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.83  E-value=2.5e-19  Score=140.77  Aligned_cols=160  Identities=21%  Similarity=0.295  Sum_probs=121.1

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEE----eCCceEEEeCCCCccccchhHHHHHHHHHH
Q 029158           19 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK----LGTKLCLVDLPGYGFAYAKEEVKDAWEELV   94 (198)
Q Consensus        19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~----~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~   94 (198)
                      ++.|.|.++|....|||||+.+|-+.. ++ .....+.|+-+.-+.    .+..++|+||||+             ..+.
T Consensus       151 ~RpPVVTiMGHVDHGKTTLLD~lRks~-VA-A~E~GGITQhIGAF~V~~p~G~~iTFLDTPGH-------------aAF~  215 (683)
T KOG1145|consen  151 PRPPVVTIMGHVDHGKTTLLDALRKSS-VA-AGEAGGITQHIGAFTVTLPSGKSITFLDTPGH-------------AAFS  215 (683)
T ss_pred             CCCCeEEEeecccCChhhHHHHHhhCc-ee-hhhcCCccceeceEEEecCCCCEEEEecCCcH-------------HHHH
Confidence            568899999999999999999999873 33 333455666544222    4788999999996             3444


Q ss_pred             HHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHH-H-HHhccCCCCCcE
Q 029158           95 KEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEE-S-LKANNSLVQPVM  172 (198)
Q Consensus        95 ~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~-~-~~~~~~~~~~v~  172 (198)
                      ..--++....|.+++|+-+.+|+..++.+.++.....++|+|+.+||+|.+...- ++...++.+ - .....+...+++
T Consensus       216 aMRaRGA~vtDIvVLVVAadDGVmpQT~EaIkhAk~A~VpiVvAinKiDkp~a~p-ekv~~eL~~~gi~~E~~GGdVQvi  294 (683)
T KOG1145|consen  216 AMRARGANVTDIVVLVVAADDGVMPQTLEAIKHAKSANVPIVVAINKIDKPGANP-EKVKRELLSQGIVVEDLGGDVQVI  294 (683)
T ss_pred             HHHhccCccccEEEEEEEccCCccHhHHHHHHHHHhcCCCEEEEEeccCCCCCCH-HHHHHHHHHcCccHHHcCCceeEE
Confidence            4444566779999999999999999999999999999999999999999886543 222222221 1 112234468899


Q ss_pred             EeccCCCCChHHHHHHHHHhhc
Q 029158          173 MVSSKSGAGIRSLRTVLSKIAR  194 (198)
Q Consensus       173 ~~Sa~~~~gi~~l~~~i~~~~~  194 (198)
                      ++||++|+|++.|.+.+.-.+.
T Consensus       295 piSAl~g~nl~~L~eaill~Ae  316 (683)
T KOG1145|consen  295 PISALTGENLDLLEEAILLLAE  316 (683)
T ss_pred             EeecccCCChHHHHHHHHHHHH
Confidence            9999999999999998876543

>KOG0394 consensus Ras-related GTPase [General function prediction only]

Probab=99.82  E-value=1.4e-19  Score=123.69  Aligned_cols=161  Identities=15%  Similarity=0.137  Sum_probs=107.6

Q ss_pred             CCCCCeEEEEcCCCCCHHHHHHHHhcCccceeecC---CCCceeEEEEEEeCCceEEEeCCCCccccchhHHHHHHHHHH
Q 029158           18 APDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSD---KPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELV   94 (198)
Q Consensus        18 ~~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~---~~~~t~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~   94 (198)
                      +....+|.++|.+|+|||||++++.+.+.......   ....|++..+...-..+++|||+|.          +++..+.
T Consensus         6 K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQ----------ERFqsLg   75 (210)
T KOG0394|consen    6 KRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQ----------ERFQSLG   75 (210)
T ss_pred             cccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccH----------HHhhhcc
Confidence            45568999999999999999999998642111111   1224555555555567899999993          4445554


Q ss_pred             HHHHhcccccceEEEEEeCCCC--CCcCcH---HHHHHHHh---hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccC
Q 029158           95 KEYVSTRVSLKRVCLLIDTKWG--VKPRDH---ELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNS  166 (198)
Q Consensus        95 ~~~~~~~~~~d~vi~v~d~~~~--~~~~~~---~~~~~~~~---~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~  166 (198)
                      -.++++   +|..++++|....  +...+.   +++.+...   ...|.|+++||+|+.............++-+.... 
T Consensus        76 ~aFYRg---aDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~g-  151 (210)
T KOG0394|consen   76 VAFYRG---ADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKG-  151 (210)
T ss_pred             cceecC---CceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcC-
Confidence            455555   7888888887653  222222   22333222   24799999999999875433333344444444433 


Q ss_pred             CCCCcEEeccCCCCChHHHHHHHHHhh
Q 029158          167 LVQPVMMVSSKSGAGIRSLRTVLSKIA  193 (198)
Q Consensus       167 ~~~~v~~~Sa~~~~gi~~l~~~i~~~~  193 (198)
                       .+|+|++|||...|+++.|+.+...+
T Consensus       152 -nipyfEtSAK~~~NV~~AFe~ia~~a  177 (210)
T KOG0394|consen  152 -NIPYFETSAKEATNVDEAFEEIARRA  177 (210)
T ss_pred             -CceeEEecccccccHHHHHHHHHHHH
Confidence             69999999999999999999887654

>cd01873 RhoBTB RhoBTB subfamily

Probab=99.82  E-value=2.2e-19  Score=128.94  Aligned_cols=153  Identities=12%  Similarity=-0.047  Sum_probs=92.5

Q ss_pred             CeEEEEcCCCCCHHHHHH-HHhcCccc--eeecCCCCcee--E-E------------EEEEeCCceEEEeCCCCccccch
Q 029158           22 PEIAFAGRSNVGKSSMLN-ALTRQWGV--VRTSDKPGLTQ--T-I------------NFFKLGTKLCLVDLPGYGFAYAK   83 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~-~l~~~~~~--~~~~~~~~~t~--~-~------------~~~~~~~~~~iiDtpG~~~~~~~   83 (198)
                      .+|+++|.+|+|||||+. ++.+....  .....+.+|..  + .            .+......+.+|||+|...    
T Consensus         3 ~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~----   78 (195)
T cd01873           3 IKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD----   78 (195)
T ss_pred             eEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh----
Confidence            589999999999999996 55543110  11222333321  1 0            1111246789999999621    


Q ss_pred             hHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcH--HHHHHHHh--hCCcEEEEEeccCCCCcHH----------
Q 029158           84 EEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDH--ELISLMER--SQTKYQVVLTKTDTVFPID----------  149 (198)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~--~~~~~~~~--~~~p~iiv~nK~Dl~~~~~----------  149 (198)
                              .+...++   ..+|++++|+|.++..+-...  .|+..+..  .+.|+++|+||+|+.....          
T Consensus        79 --------~~~~~~~---~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~  147 (195)
T cd01873          79 --------KDRRFAY---GRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLRYADLDEVNRARRPL  147 (195)
T ss_pred             --------hhhcccC---CCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccccccchhhhccccc
Confidence                    1111222   359999999999864332222  34555543  2689999999999964210          


Q ss_pred             -------HHHHHHHHHHHHHhccCCCCCcEEeccCCCCChHHHHHHHHHh
Q 029158          150 -------VARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKI  192 (198)
Q Consensus       150 -------~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~~~gi~~l~~~i~~~  192 (198)
                             ..-..++.++...   ..+++++++||++|+|++++|+.+.+.
T Consensus       148 ~~~~~~~~~V~~~e~~~~a~---~~~~~~~E~SAkt~~~V~e~F~~~~~~  194 (195)
T cd01873         148 ARPIKNADILPPETGRAVAK---ELGIPYYETSVVTQFGVKDVFDNAIRA  194 (195)
T ss_pred             ccccccCCccCHHHHHHHHH---HhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence                   0000111222211   124789999999999999999998764

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.

>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta)

Probab=99.82  E-value=6.4e-19  Score=127.41  Aligned_cols=155  Identities=19%  Similarity=0.241  Sum_probs=91.9

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEE-----eCCceEEEeCCCCccccchhHHHHHHHHHHHH
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK-----LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE   96 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~-----~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~   96 (198)
                      ++|+++|++|+|||||+++|.....   ....+.++.......     .+..+.+|||||+..          +......
T Consensus         1 ~~vll~G~~~sGKTsL~~~l~~~~~---~~t~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~----------~~~~~~~   67 (203)
T cd04105           1 PTVLLLGPSDSGKTALFTKLTTGKY---RSTVTSIEPNVATFILNSEGKGKKFRLVDVPGHPK----------LRDKLLE   67 (203)
T ss_pred             CeEEEEcCCCCCHHHHHHHHhcCCC---CCccCcEeecceEEEeecCCCCceEEEEECCCCHH----------HHHHHHH
Confidence            5799999999999999999998731   112222222222111     256799999999632          1222223


Q ss_pred             HHhcccccceEEEEEeCCCCCCcCc--HHH-HHHHH-----hhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHH------
Q 029158           97 YVSTRVSLKRVCLLIDTKWGVKPRD--HEL-ISLME-----RSQTKYQVVLTKTDTVFPIDVARRAMQIEESLK------  162 (198)
Q Consensus        97 ~~~~~~~~d~vi~v~d~~~~~~~~~--~~~-~~~~~-----~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~------  162 (198)
                      ++...  +++++||+|+........  .++ +..+.     ..+.|+++++||+|+......+...+.+++.+.      
T Consensus        68 ~~~~~--~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a~~~~~i~~~le~ei~~~~~~r  145 (203)
T cd04105          68 TLKNS--AKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTAKPAKKIKEQLEKELNTLRESR  145 (203)
T ss_pred             HHhcc--CCEEEEEEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcccCCHHHHHHHHHHHHHHHHHHH
Confidence            33331  399999999987421111  112 22221     137999999999999865433333333222111      


Q ss_pred             -h-c-------------------------cCCCCCcEEeccCCCC-ChHHHHHHHHH
Q 029158          163 -A-N-------------------------NSLVQPVMMVSSKSGA-GIRSLRTVLSK  191 (198)
Q Consensus       163 -~-~-------------------------~~~~~~v~~~Sa~~~~-gi~~l~~~i~~  191 (198)
                       . .                         ....+.++.+|++.+. |++++.+||.+
T Consensus       146 ~~~l~~~~~~~~~~~~~~~~~~~~f~f~~~~~~v~~~~~s~~~~~~~~~~~~~w~~~  202 (203)
T cd04105         146 SKSLSSLDGDEGSKESLGDKGGKSFEFDQLEGKVEFLEGSVKVDGGGIDGWEEWIDE  202 (203)
T ss_pred             hccccccccccccccccccccCcceeeccCceeEEEEEeEEecCCCChHhHHHHHhh
Confidence             0 0                         0012457888887765 69999999875

SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ

>cd01885 EF2 EF2 (for archaea and eukarya)

Probab=99.82  E-value=1.7e-18  Score=126.18  Aligned_cols=111  Identities=19%  Similarity=0.268  Sum_probs=76.8

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCccce--------e------ecCCCCceeE-----EEEEEe--------CCceEEEeC
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQWGVV--------R------TSDKPGLTQT-----INFFKL--------GTKLCLVDL   74 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~~~~~--------~------~~~~~~~t~~-----~~~~~~--------~~~~~iiDt   74 (198)
                      ++|+++|..++|||||+.+|+......        .      .....+.|..     ..+...        +..+.+|||
T Consensus         1 RNvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDT   80 (222)
T cd01885           1 RNICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDS   80 (222)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECC
Confidence            369999999999999999998642110        0      0001122211     112211        567899999


Q ss_pred             CCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCC
Q 029158           75 PGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV  145 (198)
Q Consensus        75 pG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~  145 (198)
                      ||+.+             +..+.......+|++++|+|+.++....+..++..+...++|+++|+||+|+.
T Consensus        81 PG~~~-------------f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~~~~p~ilviNKiD~~  138 (222)
T cd01885          81 PGHVD-------------FSSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQALKERVKPVLVINKIDRL  138 (222)
T ss_pred             CCccc-------------cHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCcc
Confidence            99732             22333344445999999999999887777778877777789999999999986

Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco

>cd01850 CDC_Septin CDC/Septin

Probab=99.82  E-value=2.9e-18  Score=129.16  Aligned_cols=152  Identities=20%  Similarity=0.328  Sum_probs=100.0

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCccceeecC--------CCCcee-EEE---EEEeC--CceEEEeCCCCccccchhHH
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSD--------KPGLTQ-TIN---FFKLG--TKLCLVDLPGYGFAYAKEEV   86 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~--------~~~~t~-~~~---~~~~~--~~~~iiDtpG~~~~~~~~~~   86 (198)
                      ..+|+++|.+|+|||||+|+|++.. +.....        ...++. ...   +...+  .++++|||||+++.......
T Consensus         4 ~f~I~vvG~sg~GKSTliN~L~~~~-~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~   82 (276)
T cd01850           4 QFNIMVVGESGLGKSTFINTLFNTK-LIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDC   82 (276)
T ss_pred             EEEEEEEcCCCCCHHHHHHHHHcCC-CccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhh
Confidence            4689999999999999999999884 332221        122221 111   11112  46999999999876533221


Q ss_pred             H--------HHHHHHHHHHHhc-------ccccceEEEEEeCCC-CCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHH
Q 029158           87 K--------DAWEELVKEYVST-------RVSLKRVCLLIDTKW-GVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDV  150 (198)
Q Consensus        87 ~--------~~~~~~~~~~~~~-------~~~~d~vi~v~d~~~-~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~  150 (198)
                      .        +.+...+.+-.+.       ...+|+++|++++.. ++...+.++++.+.. ++|+++|+||+|+.+..++
T Consensus        83 ~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~~lk~l~~-~v~vi~VinK~D~l~~~e~  161 (276)
T cd01850          83 WKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIEFMKRLSK-RVNIIPVIAKADTLTPEEL  161 (276)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHHHHHHHhc-cCCEEEEEECCCcCCHHHH
Confidence            1        1122222111111       124788999998764 666777888888875 7999999999999987777


Q ss_pred             HHHHHHHHHHHHhccCCCCCcEEeccC
Q 029158          151 ARRAMQIEESLKANNSLVQPVMMVSSK  177 (198)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~v~~~Sa~  177 (198)
                      ....+.+++.+...   +++++.....
T Consensus       162 ~~~k~~i~~~l~~~---~i~~~~~~~~  185 (276)
T cd01850         162 KEFKQRIMEDIEEH---NIKIYKFPED  185 (276)
T ss_pred             HHHHHHHHHHHHHc---CCceECCCCC
Confidence            77777777777654   4677776653

Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.

>KOG2486 consensus Predicted GTPase [General function prediction only]

Probab=99.81  E-value=1.9e-19  Score=130.82  Aligned_cols=180  Identities=33%  Similarity=0.471  Sum_probs=139.4

Q ss_pred             CcCCCCCCCCCeEEEEcCCCCCHHHHHHHHhcCccceeecC-CCCceeEEEEEEeCCceEEEeCCCCccccchhHHHHHH
Q 029158           12 VSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSD-KPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAW   90 (198)
Q Consensus        12 ~~~~~~~~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~-~~~~t~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~   90 (198)
                      .....|...+|++++.|.+++|||||+|.++....+...+. .++-|+.++.+..+..+.++|.||++.+--.......|
T Consensus       127 ~~~D~Pk~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~~~~~~vDlPG~~~a~y~~~~~~d~  206 (320)
T KOG2486|consen  127 TAEDCPKDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVGKSWYEVDLPGYGRAGYGFELPADW  206 (320)
T ss_pred             eeccCCCCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeeccceEEEEecCCcccccCCccCcchH
Confidence            34445667889999999999999999999998754443333 67788889999999999999999976654455556677


Q ss_pred             HHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHH--HH----HHHHHHHHHHHhc
Q 029158           91 EELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPID--VA----RRAMQIEESLKAN  164 (198)
Q Consensus        91 ~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~--~~----~~~~~~~~~~~~~  164 (198)
                      ..+...|+-.+.+.--+++++|++.++...|...+.++.+.++|+.+|+||||......  ..    .....++...+..
T Consensus       207 ~~~t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~ge~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~~~~  286 (320)
T KOG2486|consen  207 DKFTKSYLLERENLVRVFLLVDASVPIQPTDNPEIAWLGENNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLIRGV  286 (320)
T ss_pred             hHhHHHHHHhhhhhheeeeeeeccCCCCCCChHHHHHHhhcCCCeEEeeehhhhhhhccccccCccccceeehhhccccc
Confidence            88888999888877778889999999999999999999999999999999999875432  11    1122233333333


Q ss_pred             cCCCCCcEEeccCCCCChHHHHHHHHH
Q 029158          165 NSLVQPVMMVSSKSGAGIRSLRTVLSK  191 (198)
Q Consensus       165 ~~~~~~v~~~Sa~~~~gi~~l~~~i~~  191 (198)
                      .....|++.+|+.++.|++.|.=.|..
T Consensus       287 f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q  313 (320)
T KOG2486|consen  287 FLVDLPWIYVSSVTSLGRDLLLLHIAQ  313 (320)
T ss_pred             eeccCCceeeecccccCceeeeeehhh
Confidence            333578889999999999988655544

>cd04167 Snu114p Snu114p subfamily

Probab=99.81  E-value=5.8e-19  Score=128.74  Aligned_cols=159  Identities=20%  Similarity=0.211  Sum_probs=97.2

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCcccee-----------ecC------CCCceeE---EEEE-----EeCCceEEEeCCC
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQWGVVR-----------TSD------KPGLTQT---INFF-----KLGTKLCLVDLPG   76 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~-----------~~~------~~~~t~~---~~~~-----~~~~~~~iiDtpG   76 (198)
                      ++|+++|.+|+|||||+++|+.......           ..+      ..+.+..   ..+.     .....+.+|||||
T Consensus         1 rnv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG   80 (213)
T cd04167           1 RNVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPG   80 (213)
T ss_pred             CcEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCC
Confidence            3689999999999999999987521110           000      0112211   1111     1135789999999


Q ss_pred             CccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCC-------cH-
Q 029158           77 YGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF-------PI-  148 (198)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~-------~~-  148 (198)
                      +.+-             ..........+|++++|+|+.++......+++..+...+.|+++|+||+|+..       .+ 
T Consensus        81 ~~~f-------------~~~~~~~~~~aD~~llVvD~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~~~~~~l~~~~~  147 (213)
T cd04167          81 HVNF-------------MDEVAAALRLSDGVVLVVDVVEGVTSNTERLIRHAILEGLPIVLVINKIDRLILELKLPPNDA  147 (213)
T ss_pred             Ccch-------------HHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCcccccCCHHHH
Confidence            7431             11222223348999999999887655555566666656799999999999862       12 


Q ss_pred             --HHHHHHHHHHHHHHhccC--------CCCCcEEeccCCCCChH--------HHHHHHHHhh
Q 029158          149 --DVARRAMQIEESLKANNS--------LVQPVMMVSSKSGAGIR--------SLRTVLSKIA  193 (198)
Q Consensus       149 --~~~~~~~~~~~~~~~~~~--------~~~~v~~~Sa~~~~gi~--------~l~~~i~~~~  193 (198)
                        ...+..+.+...+.....        ....+++.|++.++++.        +|++.|.+..
T Consensus       148 ~~~l~~~i~~~n~~~~~~~~~~~~~~~p~~~nv~~~s~~~~w~~~~~~~~~~~~~~~~~~~~~  210 (213)
T cd04167         148 YFKLRHIIDEVNNIIASFSTTLSFLFSPENGNVCFASSKFGFCFTLESFAKKYGLVDSIVSNI  210 (213)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCceEeccCCCeEEEEecCCCeEEecHHHHhhhhHHHHHHhhC
Confidence              122233334433332211        12338899999998887        6777666554

Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.

>cd04129 Rho2 Rho2 subfamily

Probab=99.81  E-value=8.4e-19  Score=125.43  Aligned_cols=158  Identities=16%  Similarity=0.057  Sum_probs=94.0

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeE-----EEEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHH
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT-----INFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE   96 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~-----~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~   96 (198)
                      .+|+++|++|+|||||++++......   ..+.++..+     ..+......+.+|||+|....          ......
T Consensus         2 ~Ki~ivG~~g~GKStLl~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~----------~~~~~~   68 (187)
T cd04129           2 RKLVIVGDGACGKTSLLSVFTLGEFP---EEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEY----------ERLRPL   68 (187)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCC---cccCCcccceEEEEEEECCEEEEEEEEECCCChhc----------cccchh
Confidence            47999999999999999999865321   122222211     111112346889999996321          111111


Q ss_pred             HHhcccccceEEEEEeCCCCCCcCc--HHHHHHHHhh--CCcEEEEEeccCCCCcHHHH------HH--HHHHHHHHHhc
Q 029158           97 YVSTRVSLKRVCLLIDTKWGVKPRD--HELISLMERS--QTKYQVVLTKTDTVFPIDVA------RR--AMQIEESLKAN  164 (198)
Q Consensus        97 ~~~~~~~~d~vi~v~d~~~~~~~~~--~~~~~~~~~~--~~p~iiv~nK~Dl~~~~~~~------~~--~~~~~~~~~~~  164 (198)
                      +   ...+|++++++|..+......  ..++..+...  +.|+++|+||+|+.......      ..  .+..+..... 
T Consensus        69 ~---~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~-  144 (187)
T cd04129          69 S---YSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKE-  144 (187)
T ss_pred             h---cCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHH-
Confidence            1   234889999999865322222  2345555432  69999999999985421000      00  0111111111 


Q ss_pred             cCCCCCcEEeccCCCCChHHHHHHHHHhhcccc
Q 029158          165 NSLVQPVMMVSSKSGAGIRSLRTVLSKIARFAK  197 (198)
Q Consensus       165 ~~~~~~v~~~Sa~~~~gi~~l~~~i~~~~~~~r  197 (198)
                       ....+++++||++|.|++++++++.+.+-..|
T Consensus       145 -~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~~~  176 (187)
T cd04129         145 -IGAKKYMECSALTGEGVDDVFEAATRAALLVR  176 (187)
T ss_pred             -hCCcEEEEccCCCCCCHHHHHHHHHHHHhccc
Confidence             11247999999999999999999998765544

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=99.81  E-value=6.7e-19  Score=120.77  Aligned_cols=147  Identities=21%  Similarity=0.112  Sum_probs=92.0

Q ss_pred             EEcCCCCCHHHHHHHHhcCccceeecCCCCceeE---EEEE--EeCCceEEEeCCCCccccchhHHHHHHHHHHHHHHhc
Q 029158           26 FAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT---INFF--KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVST  100 (198)
Q Consensus        26 ~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~---~~~~--~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~  100 (198)
                      ++|++|+|||||++++++... . ......+...   ....  ..+..+.+||+||....          ....   ...
T Consensus         1 iiG~~~~GKStl~~~l~~~~~-~-~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~----------~~~~---~~~   65 (157)
T cd00882           1 VVGDSGVGKTSLLNRLLGGEF-V-PEEYETTIIDFYSKTIEVDGKKVKLQIWDTAGQERF----------RSLR---RLY   65 (157)
T ss_pred             CCCcCCCcHHHHHHHHHhCCc-C-CcccccchhheeeEEEEECCEEEEEEEEecCChHHH----------HhHH---HHH
Confidence            579999999999999998731 1 1111111111   1111  12567999999996321          1111   222


Q ss_pred             ccccceEEEEEeCCCCCCcCcHHHH-----HHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEec
Q 029158          101 RVSLKRVCLLIDTKWGVKPRDHELI-----SLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVS  175 (198)
Q Consensus       101 ~~~~d~vi~v~d~~~~~~~~~~~~~-----~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~S  175 (198)
                      ...+|++++|+|++.+....+...+     ......+.|+++++||+|+..........  ......  .....+++++|
T Consensus        66 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~--~~~~~~--~~~~~~~~~~s  141 (157)
T cd00882          66 YRGADGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEE--LAEQLA--KELGVPYFETS  141 (157)
T ss_pred             hcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHH--HHHHHH--hhcCCcEEEEe
Confidence            3448999999999874333332221     22233479999999999998765443321  111111  12358999999


Q ss_pred             cCCCCChHHHHHHHHH
Q 029158          176 SKSGAGIRSLRTVLSK  191 (198)
Q Consensus       176 a~~~~gi~~l~~~i~~  191 (198)
                      ++.+.|+++++++|.+
T Consensus       142 ~~~~~~i~~~~~~l~~  157 (157)
T cd00882         142 AKTGENVEELFEELAE  157 (157)
T ss_pred             cCCCCChHHHHHHHhC
Confidence            9999999999999853

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]

Probab=99.81  E-value=3.6e-18  Score=114.58  Aligned_cols=158  Identities=15%  Similarity=0.193  Sum_probs=103.4

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHHHH
Q 029158           19 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV   98 (198)
Q Consensus        19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~   98 (198)
                      .+..+|+++|..||||||++++|.+. ....+++..+... .+....+..+.+||..|.      ...+..|.    .|+
T Consensus        14 erE~riLiLGLdNsGKTti~~kl~~~-~~~~i~pt~gf~I-ktl~~~~~~L~iwDvGGq------~~lr~~W~----nYf   81 (185)
T KOG0073|consen   14 EREVRILILGLDNSGKTTIVKKLLGE-DTDTISPTLGFQI-KTLEYKGYTLNIWDVGGQ------KTLRSYWK----NYF   81 (185)
T ss_pred             hheeEEEEEecCCCCchhHHHHhcCC-CccccCCccceee-EEEEecceEEEEEEcCCc------chhHHHHH----Hhh
Confidence            35788999999999999999999997 3222222221111 123344788999999994      33344444    454


Q ss_pred             hcccccceEEEEEeCCCCCCcCc-HHHHHH-HH---hhCCcEEEEEeccCCCCcHHHHHHH--HHHHHHHHhccCCCCCc
Q 029158           99 STRVSLKRVCLLIDTKWGVKPRD-HELISL-ME---RSQTKYQVVLTKTDTVFPIDVARRA--MQIEESLKANNSLVQPV  171 (198)
Q Consensus        99 ~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~-~~---~~~~p~iiv~nK~Dl~~~~~~~~~~--~~~~~~~~~~~~~~~~v  171 (198)
                      ..   .|++++|+|++....-.+ ...+.. +.   -.+.|+++++||.|+...-..+.+.  ..+.+..   ....+++
T Consensus        82 es---tdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~---ks~~~~l  155 (185)
T KOG0073|consen   82 ES---TDGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELA---KSHHWRL  155 (185)
T ss_pred             hc---cCeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhc---cccCceE
Confidence            44   899999999976322211 111222 21   2368999999999998544433332  2222222   2335899


Q ss_pred             EEeccCCCCChHHHHHHHHHhhc
Q 029158          172 MMVSSKSGAGIRSLRTVLSKIAR  194 (198)
Q Consensus       172 ~~~Sa~~~~gi~~l~~~i~~~~~  194 (198)
                      +-||+.+|+++.+-++|+...+.
T Consensus       156 ~~cs~~tge~l~~gidWL~~~l~  178 (185)
T KOG0073|consen  156 VKCSAVTGEDLLEGIDWLCDDLM  178 (185)
T ss_pred             EEEeccccccHHHHHHHHHHHHH
Confidence            99999999999999999987654

>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily

Probab=99.81  E-value=1.7e-18  Score=130.40  Aligned_cols=112  Identities=21%  Similarity=0.311  Sum_probs=76.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCccce----eecC------C------CCceeE---EEEEEeCCceEEEeCCCCccccch
Q 029158           23 EIAFAGRSNVGKSSMLNALTRQWGVV----RTSD------K------PGLTQT---INFFKLGTKLCLVDLPGYGFAYAK   83 (198)
Q Consensus        23 ~v~~vG~~~~GKSsli~~l~~~~~~~----~~~~------~------~~~t~~---~~~~~~~~~~~iiDtpG~~~~~~~   83 (198)
                      +|+++|.+|+|||||+++|+......    .+..      +      .+.+..   ..+...+..+.+|||||+.+    
T Consensus         1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~----   76 (268)
T cd04170           1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYAD----   76 (268)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHH----
Confidence            48999999999999999998542110    0100      0      011111   12333467899999999621    


Q ss_pred             hHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCc
Q 029158           84 EEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFP  147 (198)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~  147 (198)
                               +..........+|++++|+|++.+........++.+...+.|.++++||+|+...
T Consensus        77 ---------f~~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~~~~p~iivvNK~D~~~~  131 (268)
T cd04170          77 ---------FVGETRAALRAADAALVVVSAQSGVEVGTEKLWEFADEAGIPRIIFINKMDRERA  131 (268)
T ss_pred             ---------HHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCccCCC
Confidence                     2222333334599999999999877666677777777778999999999998754

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group

>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.80  E-value=8.8e-19  Score=120.01  Aligned_cols=155  Identities=15%  Similarity=0.115  Sum_probs=102.6

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCce---eEEEEEEeCCceEEEeCCCCccccchhHHHHHHHHHHH
Q 029158           19 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT---QTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVK   95 (198)
Q Consensus        19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t---~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~   95 (198)
                      ....++.++|..|+|||+|+.+++...+.+......+..   +..++......+++|||+|+          +.+....+
T Consensus         4 ~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGq----------e~frsv~~   73 (216)
T KOG0098|consen    4 AYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQ----------ESFRSVTR   73 (216)
T ss_pred             cceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCc----------HHHHHHHH
Confidence            346789999999999999999999984333222222211   11223333568999999995          56677888


Q ss_pred             HHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHh---hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCc
Q 029158           96 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPV  171 (198)
Q Consensus        96 ~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~---~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v  171 (198)
                      .|++.   +.++++|+|....-+-.. ..|+..++.   .+.-+++++||+||....++.+  ++-+.....   .+..+
T Consensus        74 syYr~---a~GalLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~Vs~--EEGeaFA~e---hgLif  145 (216)
T KOG0098|consen   74 SYYRG---AAGALLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEARREVSK--EEGEAFARE---HGLIF  145 (216)
T ss_pred             HHhcc---CcceEEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhccccccH--HHHHHHHHH---cCcee
Confidence            88888   778899999876322222 123333332   3677899999999987654432  122222211   25788


Q ss_pred             EEeccCCCCChHHHHHHHHH
Q 029158          172 MMVSSKSGAGIRSLRTVLSK  191 (198)
Q Consensus       172 ~~~Sa~~~~gi~~l~~~i~~  191 (198)
                      +++||++++|+++.|.-+..
T Consensus       146 mETSakt~~~VEEaF~nta~  165 (216)
T KOG0098|consen  146 METSAKTAENVEEAFINTAK  165 (216)
T ss_pred             ehhhhhhhhhHHHHHHHHHH
Confidence            99999999999999875543

>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]

Probab=99.80  E-value=3.7e-19  Score=139.78  Aligned_cols=163  Identities=20%  Similarity=0.207  Sum_probs=120.5

Q ss_pred             CCCCCCCeEEEEcCCCCCHHHHHHHHhcCcc-------------ceeecCCCCceeEE---EEEEeC---CceEEEeCCC
Q 029158           16 FPAPDLPEIAFAGRSNVGKSSMLNALTRQWG-------------VVRTSDKPGLTQTI---NFFKLG---TKLCLVDLPG   76 (198)
Q Consensus        16 ~~~~~~~~v~~vG~~~~GKSsli~~l~~~~~-------------~~~~~~~~~~t~~~---~~~~~~---~~~~iiDtpG   76 (198)
                      .|-++..++.++-....|||||..+|+....             .-....+.+.|...   ..++.+   +-+.+|||||
T Consensus        55 ~P~~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPG  134 (650)
T KOG0462|consen   55 DPVENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPG  134 (650)
T ss_pred             CchhhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCC
Confidence            3557788999999999999999999986521             01122345566443   244444   7789999999


Q ss_pred             CccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHH
Q 029158           77 YGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQ  156 (198)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~  156 (198)
                      +-+             +-.+..+....||++++|+||++|+..++..-+....+.+..+|.|+||+|++.+. .+....+
T Consensus       135 HvD-------------Fs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~~L~iIpVlNKIDlp~ad-pe~V~~q  200 (650)
T KOG0462|consen  135 HVD-------------FSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFEAGLAIIPVLNKIDLPSAD-PERVENQ  200 (650)
T ss_pred             ccc-------------ccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHcCCeEEEeeeccCCCCCC-HHHHHHH
Confidence            743             11122223334999999999999999999888777778899999999999998754 3445555


Q ss_pred             HHHHHHhccCCCCCcEEeccCCCCChHHHHHHHHHhhcc
Q 029158          157 IEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIARF  195 (198)
Q Consensus       157 ~~~~~~~~~~~~~~v~~~Sa~~~~gi~~l~~~i~~~~~~  195 (198)
                      +++.+.   ....+++.+|||+|.|+++++++|.+..+.
T Consensus       201 ~~~lF~---~~~~~~i~vSAK~G~~v~~lL~AII~rVPp  236 (650)
T KOG0462|consen  201 LFELFD---IPPAEVIYVSAKTGLNVEELLEAIIRRVPP  236 (650)
T ss_pred             HHHHhc---CCccceEEEEeccCccHHHHHHHHHhhCCC
Confidence            555544   234689999999999999999999988764

>cd01886 EF-G Elongation factor G (EF-G) subfamily

Probab=99.80  E-value=1.1e-18  Score=130.88  Aligned_cols=139  Identities=19%  Similarity=0.216  Sum_probs=94.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCc----cceee------------cCCCCceeEE---EEEEeCCceEEEeCCCCccccch
Q 029158           23 EIAFAGRSNVGKSSMLNALTRQW----GVVRT------------SDKPGLTQTI---NFFKLGTKLCLVDLPGYGFAYAK   83 (198)
Q Consensus        23 ~v~~vG~~~~GKSsli~~l~~~~----~~~~~------------~~~~~~t~~~---~~~~~~~~~~iiDtpG~~~~~~~   83 (198)
                      +|+++|.+|+|||||+++|+...    ....+            ....++|.+.   .+...+..+.++||||+.     
T Consensus         1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~-----   75 (270)
T cd01886           1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHV-----   75 (270)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcH-----
Confidence            48999999999999999997421    11111            1123344442   233447789999999973     


Q ss_pred             hHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHh
Q 029158           84 EEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKA  163 (198)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~  163 (198)
                              ++..+.......+|++++|+|+..+....+..++..+...++|+++++||+|+.... .+...+.+++.+..
T Consensus        76 --------df~~~~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~a~-~~~~~~~l~~~l~~  146 (270)
T cd01886          76 --------DFTIEVERSLRVLDGAVAVFDAVAGVEPQTETVWRQADRYNVPRIAFVNKMDRTGAD-FFRVVEQIREKLGA  146 (270)
T ss_pred             --------HHHHHHHHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCCCCC-HHHHHHHHHHHhCC
Confidence                    222334444455899999999999888777888888888899999999999997532 33445566655542


Q ss_pred             ccCCCCCcEEeccC
Q 029158          164 NNSLVQPVMMVSSK  177 (198)
Q Consensus       164 ~~~~~~~v~~~Sa~  177 (198)
                      .  ....++|+|+.
T Consensus       147 ~--~~~~~~Pisa~  158 (270)
T cd01886         147 N--PVPLQLPIGEE  158 (270)
T ss_pred             C--ceEEEeccccC
Confidence            2  12335677775

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta

>COG2229 Predicted GTPase [General function prediction only]

Probab=99.80  E-value=8e-18  Score=115.44  Aligned_cols=157  Identities=18%  Similarity=0.239  Sum_probs=118.3

Q ss_pred             CCCCCeEEEEcCCCCCHHHHHHHHhcCcccee-----ecCCC---CceeEEEEEEe----CCceEEEeCCCCccccchhH
Q 029158           18 APDLPEIAFAGRSNVGKSSMLNALTRQWGVVR-----TSDKP---GLTQTINFFKL----GTKLCLVDLPGYGFAYAKEE   85 (198)
Q Consensus        18 ~~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~-----~~~~~---~~t~~~~~~~~----~~~~~iiDtpG~~~~~~~~~   85 (198)
                      .-...+|++.|+.++||||++..+.....+..     .....   .||....+...    +..+.++||||+        
T Consensus         7 k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq--------   78 (187)
T COG2229           7 KMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQ--------   78 (187)
T ss_pred             cccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCCc--------
Confidence            34567899999999999999999998731111     11112   25555443332    478999999995        


Q ss_pred             HHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhC-CcEEEEEeccCCCCcHHHHHHHHHHHHHHHhc
Q 029158           86 VKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQ-TKYQVVLTKTDTVFPIDVARRAMQIEESLKAN  164 (198)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~-~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~  164 (198)
                        +++..++..+.++   ++++++++|++.+......++++.+...+ .|+++.+||.|+.+....+++.+.+...+   
T Consensus        79 --~RF~fm~~~l~~g---a~gaivlVDss~~~~~~a~~ii~f~~~~~~ip~vVa~NK~DL~~a~ppe~i~e~l~~~~---  150 (187)
T COG2229          79 --ERFKFMWEILSRG---AVGAIVLVDSSRPITFHAEEIIDFLTSRNPIPVVVAINKQDLFDALPPEKIREALKLEL---  150 (187)
T ss_pred             --HHHHHHHHHHhCC---cceEEEEEecCCCcchHHHHHHHHHhhccCCCEEEEeeccccCCCCCHHHHHHHHHhcc---
Confidence              5566777666666   89999999999876666677788887776 99999999999998876666655555443   


Q ss_pred             cCCCCCcEEeccCCCCChHHHHHHHHHh
Q 029158          165 NSLVQPVMMVSSKSGAGIRSLRTVLSKI  192 (198)
Q Consensus       165 ~~~~~~v~~~Sa~~~~gi~~l~~~i~~~  192 (198)
                        ...|+|..+|..++|..+.++.+...
T Consensus       151 --~~~~vi~~~a~e~~~~~~~L~~ll~~  176 (187)
T COG2229         151 --LSVPVIEIDATEGEGARDQLDVLLLK  176 (187)
T ss_pred             --CCCceeeeecccchhHHHHHHHHHhh
Confidence              35899999999999999998887765

>PLN00043 elongation factor 1-alpha; Provisional

Probab=99.80  E-value=3.5e-18  Score=136.43  Aligned_cols=152  Identities=20%  Similarity=0.231  Sum_probs=106.6

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCccc-----------------------------eeecCCCCceeEEEEEE---eCC
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQWGV-----------------------------VRTSDKPGLTQTINFFK---LGT   67 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~-----------------------------~~~~~~~~~t~~~~~~~---~~~   67 (198)
                      ...+|+++|..++|||||+.+|+.....                             .......+.|.+..+..   .+.
T Consensus         6 ~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~~~   85 (447)
T PLN00043          6 VHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKY   85 (447)
T ss_pred             ceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCCCE
Confidence            4567999999999999999998842100                             00111233455544332   356


Q ss_pred             ceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC-------cCcHHHHHHHHhhCCc-EEEEE
Q 029158           68 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVK-------PRDHELISLMERSQTK-YQVVL  139 (198)
Q Consensus        68 ~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~-------~~~~~~~~~~~~~~~p-~iiv~  139 (198)
                      .+.++||||+             .++..++......+|++++|+|+..+..       ....+.+..+...++| +|+++
T Consensus        86 ~i~liDtPGh-------------~df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~~gi~~iIV~v  152 (447)
T PLN00043         86 YCTVIDAPGH-------------RDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCC  152 (447)
T ss_pred             EEEEEECCCH-------------HHHHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHHcCCCcEEEEE
Confidence            8999999997             6677777888888999999999998632       3445666667777885 68899


Q ss_pred             eccCCCCc----HHHHHHHHHHHHHHHhccC--CCCCcEEeccCCCCChHH
Q 029158          140 TKTDTVFP----IDVARRAMQIEESLKANNS--LVQPVMMVSSKSGAGIRS  184 (198)
Q Consensus       140 nK~Dl~~~----~~~~~~~~~~~~~~~~~~~--~~~~v~~~Sa~~~~gi~~  184 (198)
                      ||+|+.+.    ...++..+++++.+.....  ...+++++||.+|+|+.+
T Consensus       153 NKmD~~~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~  203 (447)
T PLN00043        153 NKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE  203 (447)
T ss_pred             EcccCCchhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence            99998732    2344556666666654331  247899999999999853

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.79  E-value=2.7e-18  Score=119.84  Aligned_cols=150  Identities=18%  Similarity=0.149  Sum_probs=96.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCccceeecCCCCce-eEE---EEE--EeCCceEEEeCCCCccccchhHHHHHHHHHHHH
Q 029158           23 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT-QTI---NFF--KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE   96 (198)
Q Consensus        23 ~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t-~~~---~~~--~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~   96 (198)
                      +|+++|++|+|||||++++.+...   ...+.++. .+.   .+.  .....+.+||++|...-          ..+...
T Consensus         1 Ki~vvG~~~vGKtsl~~~~~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~----------~~~~~~   67 (162)
T PF00071_consen    1 KIVVVGDSGVGKTSLINRLINGEF---PENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERF----------DSLRDI   67 (162)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSST---TSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGG----------HHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHhhcc---ccccccccccccccccccccccccccccccccccccc----------cccccc
Confidence            689999999999999999998732   22232222 121   121  23467999999995321          222333


Q ss_pred             HHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHhh---CCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcE
Q 029158           97 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS---QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVM  172 (198)
Q Consensus        97 ~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~~---~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~  172 (198)
                      ++..   +|++++++|.++.-+-.. ..|+..+...   +.|+++|+||.|+........  +..++.....   ..+++
T Consensus        68 ~~~~---~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v~~--~~~~~~~~~~---~~~~~  139 (162)
T PF00071_consen   68 FYRN---SDAIIIVFDVTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDEREVSV--EEAQEFAKEL---GVPYF  139 (162)
T ss_dssp             HHTT---ESEEEEEEETTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGSSSCH--HHHHHHHHHT---TSEEE
T ss_pred             cccc---cccccccccccccccccccccccccccccccccccceeeeccccccccccchh--hHHHHHHHHh---CCEEE
Confidence            3333   899999999876322111 2445554433   489999999999986332211  1222222222   38999


Q ss_pred             EeccCCCCChHHHHHHHHHhh
Q 029158          173 MVSSKSGAGIRSLRTVLSKIA  193 (198)
Q Consensus       173 ~~Sa~~~~gi~~l~~~i~~~~  193 (198)
                      ++||+++.|+.+++..+.+.+
T Consensus       140 e~Sa~~~~~v~~~f~~~i~~i  160 (162)
T PF00071_consen  140 EVSAKNGENVKEIFQELIRKI  160 (162)
T ss_dssp             EEBTTTTTTHHHHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHHHHH
Confidence            999999999999999988765

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]

Probab=99.79  E-value=1.6e-18  Score=115.94  Aligned_cols=149  Identities=17%  Similarity=0.092  Sum_probs=105.3

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE-------EEEeCCceEEEeCCCCccccchhHHHHHHHHH
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN-------FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEEL   93 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~-------~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~   93 (198)
                      ..+|+++|.+|+|||||+-++....    ..+..++|..+.       +...+..+.+|||+|          ++.+..+
T Consensus        11 t~KiLlIGeSGVGKSSLllrFv~~~----fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAG----------qErFRtL   76 (209)
T KOG0080|consen   11 TFKILLIGESGVGKSSLLLRFVSNT----FDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAG----------QERFRTL   76 (209)
T ss_pred             eEEEEEEccCCccHHHHHHHHHhcc----cCccCCceeeeeEEEEEEEEcCceEEEEEEeccc----------hHhhhcc
Confidence            4789999999999999999999873    445555555433       333357899999999          4667777


Q ss_pred             HHHHHhcccccceEEEEEeCCCCCCcCcH-HHHHHHHhh----CCcEEEEEeccCCCCcHHH--HHHHHHHHHHHHhccC
Q 029158           94 VKEYVSTRVSLKRVCLLIDTKWGVKPRDH-ELISLMERS----QTKYQVVLTKTDTVFPIDV--ARRAMQIEESLKANNS  166 (198)
Q Consensus        94 ~~~~~~~~~~~d~vi~v~d~~~~~~~~~~-~~~~~~~~~----~~p~iiv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~  166 (198)
                      ...|+++   +.++|+|.|..+..+-..+ .|++.+..+    ++-.++|.||+|..+...+  ++-....       ..
T Consensus        77 TpSyyRg---aqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~reEG~kfA-------r~  146 (209)
T KOG0080|consen   77 TPSYYRG---AQGIILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERVVDREEGLKFA-------RK  146 (209)
T ss_pred             CHhHhcc---CceeEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhcccccHHHHHHHH-------Hh
Confidence            8888887   7889999999764333333 345666544    3456789999997643221  1111111       12


Q ss_pred             CCCCcEEeccCCCCChHHHHHHHHHhh
Q 029158          167 LVQPVMMVSSKSGAGIRSLRTVLSKIA  193 (198)
Q Consensus       167 ~~~~v~~~Sa~~~~gi~~l~~~i~~~~  193 (198)
                      ..+-++++|||+.+|++..|+.+.+.+
T Consensus       147 h~~LFiE~SAkt~~~V~~~FeelveKI  173 (209)
T KOG0080|consen  147 HRCLFIECSAKTRENVQCCFEELVEKI  173 (209)
T ss_pred             hCcEEEEcchhhhccHHHHHHHHHHHH
Confidence            246799999999999999999887654

>PRK00007 elongation factor G; Reviewed

Probab=99.79  E-value=4.2e-18  Score=142.98  Aligned_cols=117  Identities=15%  Similarity=0.202  Sum_probs=88.0

Q ss_pred             CCCCCeEEEEcCCCCCHHHHHHHHhcCc----cceeec------------CCCCceeEE---EEEEeCCceEEEeCCCCc
Q 029158           18 APDLPEIAFAGRSNVGKSSMLNALTRQW----GVVRTS------------DKPGLTQTI---NFFKLGTKLCLVDLPGYG   78 (198)
Q Consensus        18 ~~~~~~v~~vG~~~~GKSsli~~l~~~~----~~~~~~------------~~~~~t~~~---~~~~~~~~~~iiDtpG~~   78 (198)
                      ....++|+++|.+++|||||+++|+...    ......            ...++|.+.   .+...+..+.++||||+.
T Consensus         7 ~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~   86 (693)
T PRK00007          7 LERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHV   86 (693)
T ss_pred             ccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcH
Confidence            4457799999999999999999997421    000111            134455543   344457899999999972


Q ss_pred             cccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCc
Q 029158           79 FAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFP  147 (198)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~  147 (198)
                                   ++..+.......+|++++|+|+..++...+..++..+...++|+|+++||+|+...
T Consensus        87 -------------~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~~~~p~iv~vNK~D~~~~  142 (693)
T PRK00007         87 -------------DFTIEVERSLRVLDGAVAVFDAVGGVEPQSETVWRQADKYKVPRIAFVNKMDRTGA  142 (693)
T ss_pred             -------------HHHHHHHHHHHHcCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCCCCC
Confidence                         23334555556689999999999999999999999999989999999999999753

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=99.79  E-value=9.4e-18  Score=122.58  Aligned_cols=153  Identities=13%  Similarity=0.007  Sum_probs=94.2

Q ss_pred             CCCCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEE-------EEeCCceEEEeCCCCccccchhHHHHH
Q 029158           17 PAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF-------FKLGTKLCLVDLPGYGFAYAKEEVKDA   89 (198)
Q Consensus        17 ~~~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~-------~~~~~~~~iiDtpG~~~~~~~~~~~~~   89 (198)
                      ++....+|+++|++|+|||||+++++....   ...+. +|....+       ......+.+|||+|...          
T Consensus         5 ~~~~~~kv~liG~~g~GKTtLi~~~~~~~~---~~~~~-~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~----------   70 (215)
T PTZ00132          5 DEVPEFKLILVGDGGVGKTTFVKRHLTGEF---EKKYI-PTLGVEVHPLKFYTNCGPICFNVWDTAGQEK----------   70 (215)
T ss_pred             cCCCCceEEEECCCCCCHHHHHHHHHhCCC---CCCCC-CccceEEEEEEEEECCeEEEEEEEECCCchh----------
Confidence            445568999999999999999987765521   11121 2222211       11235789999999521          


Q ss_pred             HHHHHHHHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHh--hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccC
Q 029158           90 WEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER--SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNS  166 (198)
Q Consensus        90 ~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~  166 (198)
                      +..+...++.   .++++++++|.++..+-.. ..++..+..  .+.|+++++||+|+.......+...    ...   .
T Consensus        71 ~~~~~~~~~~---~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~i~lv~nK~Dl~~~~~~~~~~~----~~~---~  140 (215)
T PTZ00132         71 FGGLRDGYYI---KGQCAIIMFDVTSRITYKNVPNWHRDIVRVCENIPIVLVGNKVDVKDRQVKARQIT----FHR---K  140 (215)
T ss_pred             hhhhhHHHhc---cCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCccccCCHHHHH----HHH---H
Confidence            1222233333   3789999999986332222 123333332  2689999999999864321111111    111   1


Q ss_pred             CCCCcEEeccCCCCChHHHHHHHHHhh
Q 029158          167 LVQPVMMVSSKSGAGIRSLRTVLSKIA  193 (198)
Q Consensus       167 ~~~~v~~~Sa~~~~gi~~l~~~i~~~~  193 (198)
                      ....++++||+++.|+++.+.+|.+.+
T Consensus       141 ~~~~~~e~Sa~~~~~v~~~f~~ia~~l  167 (215)
T PTZ00132        141 KNLQYYDISAKSNYNFEKPFLWLARRL  167 (215)
T ss_pred             cCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence            246799999999999999999887754

>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.79  E-value=7.2e-18  Score=129.07  Aligned_cols=154  Identities=19%  Similarity=0.248  Sum_probs=111.5

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCc-----------------------cce------eecCCCCceeEEE---EEEeC
Q 029158           19 PDLPEIAFAGRSNVGKSSMLNALTRQW-----------------------GVV------RTSDKPGLTQTIN---FFKLG   66 (198)
Q Consensus        19 ~~~~~v~~vG~~~~GKSsli~~l~~~~-----------------------~~~------~~~~~~~~t~~~~---~~~~~   66 (198)
                      ..+.+++++|+..+|||||+.+|+.+.                       .++      ....+.+.|.+..   +....
T Consensus         5 Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~k   84 (428)
T COG5256           5 KPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETDK   84 (428)
T ss_pred             CCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecCC
Confidence            456789999999999999999998531                       001      1122344555543   33335


Q ss_pred             CceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCC-------CCcCcHHHHHHHHhhC-CcEEEE
Q 029158           67 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG-------VKPRDHELISLMERSQ-TKYQVV  138 (198)
Q Consensus        67 ~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~-------~~~~~~~~~~~~~~~~-~p~iiv  138 (198)
                      ++++++|+||+             .++...++.+..+||..++|+|++.+       ...++.+.+...+..+ ..+|++
T Consensus        85 ~~~tIiDaPGH-------------rdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~lIVa  151 (428)
T COG5256          85 YNFTIIDAPGH-------------RDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIKQLIVA  151 (428)
T ss_pred             ceEEEeeCCch-------------HHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCCceEEEE
Confidence            67999999997             77888999999999999999999986       5566777777777666 457899


Q ss_pred             EeccCCCCcH--HHHHHHHHHHHHHHhccCC--CCCcEEeccCCCCChHHH
Q 029158          139 LTKTDTVFPI--DVARRAMQIEESLKANNSL--VQPVMMVSSKSGAGIRSL  185 (198)
Q Consensus       139 ~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~--~~~v~~~Sa~~~~gi~~l  185 (198)
                      +||+|+++..  ..++....+........-.  ..+++|+|+..|+|+.+-
T Consensus       152 vNKMD~v~wde~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~  202 (428)
T COG5256         152 VNKMDLVSWDEERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKK  202 (428)
T ss_pred             EEcccccccCHHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCccccc
Confidence            9999999743  3445555555533333222  478999999999988653

>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]

Probab=99.79  E-value=8.1e-19  Score=115.65  Aligned_cols=158  Identities=17%  Similarity=0.168  Sum_probs=109.2

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEe---CCceEEEeCCCCccccchhHHHHHHHHHHHHH
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY   97 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~   97 (198)
                      ...+.++|-.++|||||+|.++..+    ...+-..|.....+..   ...+.+||.||.          ..+..+.+.|
T Consensus        20 emel~lvGLq~sGKtt~Vn~ia~g~----~~edmiptvGfnmrk~tkgnvtiklwD~gGq----------~rfrsmWery   85 (186)
T KOG0075|consen   20 EMELSLVGLQNSGKTTLVNVIARGQ----YLEDMIPTVGFNMRKVTKGNVTIKLWDLGGQ----------PRFRSMWERY   85 (186)
T ss_pred             eeeEEEEeeccCCcceEEEEEeecc----chhhhcccccceeEEeccCceEEEEEecCCC----------ccHHHHHHHH
Confidence            4568999999999999999988753    2223334444443332   467899999994          2335555566


Q ss_pred             HhcccccceEEEEEeCCCCC--CcCcHHHHHHHH---hhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcE
Q 029158           98 VSTRVSLKRVCLLIDTKWGV--KPRDHELISLME---RSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVM  172 (198)
Q Consensus        98 ~~~~~~~d~vi~v~d~~~~~--~~~~~~~~~~~~---~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~  172 (198)
                      .+.   +++++|++|+++.-  +..-.++-+.+.   -.++|+++++||.|+..+-......+++-  +.......+.++
T Consensus        86 cR~---v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~~~~li~rmg--L~sitdREvcC~  160 (186)
T KOG0075|consen   86 CRG---VSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALSKIALIERMG--LSSITDREVCCF  160 (186)
T ss_pred             hhc---CcEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccccHHHHHHHhC--ccccccceEEEE
Confidence            655   89999999998721  111223333333   33799999999999988765544433322  223334457799


Q ss_pred             EeccCCCCChHHHHHHHHHhhcccc
Q 029158          173 MVSSKSGAGIRSLRTVLSKIARFAK  197 (198)
Q Consensus       173 ~~Sa~~~~gi~~l~~~i~~~~~~~r  197 (198)
                      .+||+...|++.+.+||.++....|
T Consensus       161 siScke~~Nid~~~~Wli~hsk~~~  185 (186)
T KOG0075|consen  161 SISCKEKVNIDITLDWLIEHSKSLR  185 (186)
T ss_pred             EEEEcCCccHHHHHHHHHHHhhhhc
Confidence            9999999999999999999987654

>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.79  E-value=4e-18  Score=126.32  Aligned_cols=162  Identities=24%  Similarity=0.344  Sum_probs=127.5

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCccceeecC--CCCceeEEE-----EE------------------------EeCC
Q 029158           19 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSD--KPGLTQTIN-----FF------------------------KLGT   67 (198)
Q Consensus        19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~--~~~~t~~~~-----~~------------------------~~~~   67 (198)
                      ....+|.++|....|||||..+|.+.+.. ..+.  ..+.|....     ++                        ..-.
T Consensus         8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~-~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R   86 (415)
T COG5257           8 QPEVNIGMVGHVDHGKTTLTKALSGVWTD-RHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVR   86 (415)
T ss_pred             CcceEeeeeeecccchhhheehhhceeee-chhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEE
Confidence            45678999999999999999999986310 0100  011111100     00                        0113


Q ss_pred             ceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCC-CcCcHHHHHHHHhhC-CcEEEEEeccCCC
Q 029158           68 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGV-KPRDHELISLMERSQ-TKYQVVLTKTDTV  145 (198)
Q Consensus        68 ~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~-~~~~~~~~~~~~~~~-~p~iiv~nK~Dl~  145 (198)
                      .+.|+|.||+             +-++..++.+....|++++|+.+++.. +.+..+++..++-.+ ..+|+|-||+|++
T Consensus        87 ~VSfVDaPGH-------------e~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIigik~iiIvQNKIDlV  153 (415)
T COG5257          87 RVSFVDAPGH-------------ETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIGIKNIIIVQNKIDLV  153 (415)
T ss_pred             EEEEeeCCch-------------HHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhccceEEEEeccccee
Confidence            6899999997             788899999999999999999999854 566788888887766 6789999999999


Q ss_pred             CcHHHHHHHHHHHHHHHhccCCCCCcEEeccCCCCChHHHHHHHHHhhc
Q 029158          146 FPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR  194 (198)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~~~gi~~l~~~i~~~~~  194 (198)
                      +.+...+.+++++++.....-.+.|++|+||.++.|++.|+++|.+..+
T Consensus       154 ~~E~AlE~y~qIk~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~Ip  202 (415)
T COG5257         154 SRERALENYEQIKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIP  202 (415)
T ss_pred             cHHHHHHHHHHHHHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCC
Confidence            9998888888999888877777899999999999999999999998765

>PRK12739 elongation factor G; Reviewed

Probab=99.78  E-value=5.7e-18  Score=142.23  Aligned_cols=118  Identities=19%  Similarity=0.277  Sum_probs=87.3

Q ss_pred             CCCCCCeEEEEcCCCCCHHHHHHHHhcCcc----ceeec------------CCCCceeEE---EEEEeCCceEEEeCCCC
Q 029158           17 PAPDLPEIAFAGRSNVGKSSMLNALTRQWG----VVRTS------------DKPGLTQTI---NFFKLGTKLCLVDLPGY   77 (198)
Q Consensus        17 ~~~~~~~v~~vG~~~~GKSsli~~l~~~~~----~~~~~------------~~~~~t~~~---~~~~~~~~~~iiDtpG~   77 (198)
                      +....++|+++|.+++|||||+++|+....    .....            ...++|.+.   .+...+..+.++||||+
T Consensus         4 ~~~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~   83 (691)
T PRK12739          4 PLEKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGH   83 (691)
T ss_pred             CccCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCH
Confidence            345678899999999999999999975311    11111            133455443   34445788999999996


Q ss_pred             ccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCc
Q 029158           78 GFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFP  147 (198)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~  147 (198)
                      .             .+..+.......+|++++|+|+..+....+..++..+...++|+|+++||+|+...
T Consensus        84 ~-------------~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~~~~p~iv~iNK~D~~~~  140 (691)
T PRK12739         84 V-------------DFTIEVERSLRVLDGAVAVFDAVSGVEPQSETVWRQADKYGVPRIVFVNKMDRIGA  140 (691)
T ss_pred             H-------------HHHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCCCC
Confidence            2             22334555555689999999999998888888888888889999999999999854

>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts)

Probab=99.78  E-value=6.2e-17  Score=119.91  Aligned_cols=129  Identities=22%  Similarity=0.178  Sum_probs=86.4

Q ss_pred             CCCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEE---eCCceEEEeCCCCccccchhHHHHHHHHHH
Q 029158           18 APDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELV   94 (198)
Q Consensus        18 ~~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~   94 (198)
                      .....+|+++|.+|+|||||+|+|++. .....+...++|.......   .+..+.+|||||+++........+.....+
T Consensus        28 ~~~~~~IllvG~tGvGKSSliNaLlg~-~~~~v~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~~~~~~~~~~~~~~I  106 (249)
T cd01853          28 LDFSLTILVLGKTGVGKSSTINSIFGE-RKAATSAFQSETLRVREVSGTVDGFKLNIIDTPGLLESVMDQRVNRKILSSI  106 (249)
T ss_pred             ccCCeEEEEECCCCCcHHHHHHHHhCC-CCcccCCCCCceEEEEEEEEEECCeEEEEEECCCcCcchhhHHHHHHHHHHH
Confidence            345789999999999999999999998 4455666666666654332   357899999999987632122222222233


Q ss_pred             HHHHhcccccceEEEEEeCCC-CCCcCcHHHHHHHHhh-C----CcEEEEEeccCCCCcH
Q 029158           95 KEYVSTRVSLKRVCLLIDTKW-GVKPRDHELISLMERS-Q----TKYQVVLTKTDTVFPI  148 (198)
Q Consensus        95 ~~~~~~~~~~d~vi~v~d~~~-~~~~~~~~~~~~~~~~-~----~p~iiv~nK~Dl~~~~  148 (198)
                      ..|+.. ...|+++|+..... .....+..+++.+... +    .++++|+||+|...+.
T Consensus       107 ~~~l~~-~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p~  165 (249)
T cd01853         107 KRYLKK-KTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASSPPD  165 (249)
T ss_pred             HHHHhc-cCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccCCCC
Confidence            344432 24678888875543 3445556677766642 2    6899999999997653

This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.

>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]

Probab=99.78  E-value=6.8e-19  Score=137.02  Aligned_cols=181  Identities=19%  Similarity=0.162  Sum_probs=127.4

Q ss_pred             ccCCcCCCC--CCCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEeC---CceEEEeCCCCccccch
Q 029158            9 AAKVSSSFP--APDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLG---TKLCLVDLPGYGFAYAK   83 (198)
Q Consensus         9 ~~~~~~~~~--~~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~---~~~~iiDtpG~~~~~~~   83 (198)
                      .......+|  ++..++++++|.|++|||||++.+...+  ..+.+|+.||...-+.+.+   -.++++||||+.+....
T Consensus       154 Vrqhl~rlPsIDp~trTlllcG~PNVGKSSf~~~vtrad--vevqpYaFTTksL~vGH~dykYlrwQViDTPGILD~plE  231 (620)
T KOG1490|consen  154 VRQHLSRLPAIDPNTRTLLVCGYPNVGKSSFNNKVTRAD--DEVQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEE  231 (620)
T ss_pred             HHHHHhcCCCCCCCcCeEEEecCCCCCcHhhcccccccc--cccCCcccccchhhhhhhhhheeeeeecCCccccCcchh
Confidence            344555566  5778899999999999999999998875  6789999999887655543   46899999998764322


Q ss_pred             hHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcC---cHHHHHHHHhh--CCcEEEEEeccCCCCcHHHHHHHHHHH
Q 029158           84 EEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPR---DHELISLMERS--QTKYQVVLTKTDTVFPIDVARRAMQIE  158 (198)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~---~~~~~~~~~~~--~~p~iiv~nK~Dl~~~~~~~~~~~~~~  158 (198)
                      +....  +-..-..+.++..  +|+|++|.++.....   ..+++..+...  +.|+|+|+||+|+..++++.+..+.+.
T Consensus       232 drN~I--EmqsITALAHLra--aVLYfmDLSe~CGySva~QvkLfhsIKpLFaNK~~IlvlNK~D~m~~edL~~~~~~ll  307 (620)
T KOG1490|consen  232 DRNII--EMQIITALAHLRS--AVLYFMDLSEMCGYSVAAQVKLYHSIKPLFANKVTILVLNKIDAMRPEDLDQKNQELL  307 (620)
T ss_pred             hhhHH--HHHHHHHHHHhhh--hheeeeechhhhCCCHHHHHHHHHHhHHHhcCCceEEEeecccccCccccCHHHHHHH
Confidence            22111  1111123334333  499999998733222   23445555543  799999999999999887766655555


Q ss_pred             HHHHhccCCCCCcEEeccCCCCChHHHHHHHHHhhcccc
Q 029158          159 ESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIARFAK  197 (198)
Q Consensus       159 ~~~~~~~~~~~~v~~~Sa~~~~gi~~l~~~i~~~~~~~r  197 (198)
                      +.+...  ..++++.+|+.+.+|+.++....++.+-..|
T Consensus       308 ~~~~~~--~~v~v~~tS~~~eegVm~Vrt~ACe~LLa~R  344 (620)
T KOG1490|consen  308 QTIIDD--GNVKVVQTSCVQEEGVMDVRTTACEALLAAR  344 (620)
T ss_pred             HHHHhc--cCceEEEecccchhceeeHHHHHHHHHHHHH
Confidence            554433  2488999999999999999998888765544

>cd01882 BMS1 Bms1

Probab=99.77  E-value=2.2e-17  Score=121.08  Aligned_cols=142  Identities=17%  Similarity=0.207  Sum_probs=98.0

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHHHHh
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS   99 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~   99 (198)
                      ....|+++|.+|+|||||++.+++...........++. . .....+.++.++||||..                ...+.
T Consensus        38 ~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~i-~-i~~~~~~~i~~vDtPg~~----------------~~~l~   99 (225)
T cd01882          38 PPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGPI-T-VVTGKKRRLTFIECPNDI----------------NAMID   99 (225)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhcccCccccccccE-E-EEecCCceEEEEeCCchH----------------HHHHH
Confidence            34569999999999999999998752111122222221 1 122346789999999841                12222


Q ss_pred             cccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEE-EEEeccCCCCcH-HHHHHHHHHHHHHHhccCCCCCcEEeccC
Q 029158          100 TRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQ-VVLTKTDTVFPI-DVARRAMQIEESLKANNSLVQPVMMVSSK  177 (198)
Q Consensus       100 ~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~i-iv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~  177 (198)
                      ....+|.+++++|++.++...+..++..+...+.|.+ +|+||+|+.... ..++..+.+++.+......+.+++++||+
T Consensus       100 ~ak~aDvVllviDa~~~~~~~~~~i~~~l~~~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~  179 (225)
T cd01882         100 IAKVADLVLLLIDASFGFEMETFEFLNILQVHGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGI  179 (225)
T ss_pred             HHHhcCEEEEEEecCcCCCHHHHHHHHHHHHcCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeec
Confidence            2345899999999998887777788888887788855 599999998543 34556666766555333346899999998


Q ss_pred             CC
Q 029158          178 SG  179 (198)
Q Consensus       178 ~~  179 (198)
                      +.
T Consensus       180 ~~  181 (225)
T cd01882         180 VH  181 (225)
T ss_pred             cC
Confidence            76

Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.

>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]

Probab=99.77  E-value=2.7e-18  Score=113.36  Aligned_cols=152  Identities=16%  Similarity=0.165  Sum_probs=106.7

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCce-eEEEEEEe-----CCceEEEeCCCCccccchhHHHHHHHHHH
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT-QTINFFKL-----GTKLCLVDLPGYGFAYAKEEVKDAWEELV   94 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t-~~~~~~~~-----~~~~~iiDtpG~~~~~~~~~~~~~~~~~~   94 (198)
                      ..+.+++|.+|+|||+|+-++...   .+..+|..|+ .+..+...     ...+.||||+|          .+.+..+.
T Consensus         8 LfkllIigDsgVGKssLl~rF~dd---tFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAG----------qErFrtit   74 (198)
T KOG0079|consen    8 LFKLLIIGDSGVGKSSLLLRFADD---TFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAG----------QERFRTIT   74 (198)
T ss_pred             HHHHHeecCCcccHHHHHHHHhhc---ccccceEEEeeeeEEEEEeecCCcEEEEEEeeccc----------HHHHHHHH
Confidence            345789999999999999999876   3444443222 22222222     35789999999          47778888


Q ss_pred             HHHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHhh--CCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCc
Q 029158           95 KEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS--QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPV  171 (198)
Q Consensus        95 ~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~~--~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v  171 (198)
                      ..|+..   .+++|+|.|...+-+-.. ..|++.++..  .+|-++|+||.|.+...-...  +..+...   ...++.+
T Consensus        75 styyrg---thgv~vVYDVTn~ESF~Nv~rWLeei~~ncdsv~~vLVGNK~d~~~RrvV~t--~dAr~~A---~~mgie~  146 (198)
T KOG0079|consen   75 STYYRG---THGVIVVYDVTNGESFNNVKRWLEEIRNNCDSVPKVLVGNKNDDPERRVVDT--EDARAFA---LQMGIEL  146 (198)
T ss_pred             HHHccC---CceEEEEEECcchhhhHhHHHHHHHHHhcCccccceecccCCCCccceeeeh--HHHHHHH---HhcCchh
Confidence            888877   789999999987544333 5567777654  478899999999986432221  1111111   1236889


Q ss_pred             EEeccCCCCChHHHHHHHHHhh
Q 029158          172 MMVSSKSGAGIRSLRTVLSKIA  193 (198)
Q Consensus       172 ~~~Sa~~~~gi~~l~~~i~~~~  193 (198)
                      |++|||..+|++..|..|.++.
T Consensus       147 FETSaKe~~NvE~mF~cit~qv  168 (198)
T KOG0079|consen  147 FETSAKENENVEAMFHCITKQV  168 (198)
T ss_pred             eehhhhhcccchHHHHHHHHHH
Confidence            9999999999999999887653

>TIGR00484 EF-G translation elongation factor EF-G

Probab=99.77  E-value=1.6e-17  Score=139.63  Aligned_cols=118  Identities=19%  Similarity=0.223  Sum_probs=84.6

Q ss_pred             CCCCCCeEEEEcCCCCCHHHHHHHHhcCccc----eeecC------------CCCceeEE---EEEEeCCceEEEeCCCC
Q 029158           17 PAPDLPEIAFAGRSNVGKSSMLNALTRQWGV----VRTSD------------KPGLTQTI---NFFKLGTKLCLVDLPGY   77 (198)
Q Consensus        17 ~~~~~~~v~~vG~~~~GKSsli~~l~~~~~~----~~~~~------------~~~~t~~~---~~~~~~~~~~iiDtpG~   77 (198)
                      +....++|+++|.+++|||||+++|+.....    ....+            ..++|.+.   .+...+..+.+|||||+
T Consensus         6 ~~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~   85 (689)
T TIGR00484         6 DLNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGH   85 (689)
T ss_pred             ccccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCC
Confidence            3456779999999999999999999753211    01111            23455443   34445788999999998


Q ss_pred             ccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCc
Q 029158           78 GFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFP  147 (198)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~  147 (198)
                      .+-             ..+.......+|++++|+|+..+....+..++..+...++|+++++||+|+...
T Consensus        86 ~~~-------------~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~  142 (689)
T TIGR00484        86 VDF-------------TVEVERSLRVLDGAVAVLDAVGGVQPQSETVWRQANRYEVPRIAFVNKMDKTGA  142 (689)
T ss_pred             cch-------------hHHHHHHHHHhCEEEEEEeCCCCCChhHHHHHHHHHHcCCCEEEEEECCCCCCC
Confidence            431             112222333489999999999988887788888888889999999999999853

After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.

>cd04169 RF3 RF3 subfamily

Probab=99.77  E-value=2.2e-17  Score=123.79  Aligned_cols=127  Identities=20%  Similarity=0.230  Sum_probs=82.8

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCcc----ceeec----------CCC------CceeE---EEEEEeCCceEEEeCCCC
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQWG----VVRTS----------DKP------GLTQT---INFFKLGTKLCLVDLPGY   77 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~~~----~~~~~----------~~~------~~t~~---~~~~~~~~~~~iiDtpG~   77 (198)
                      .++|+++|++|+|||||+++|+....    ...+.          ++.      +.+..   ..+...+..+.+|||||+
T Consensus         2 ~Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~   81 (267)
T cd04169           2 RRTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGH   81 (267)
T ss_pred             ccEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCc
Confidence            46799999999999999999985311    01110          100      11111   223344778999999996


Q ss_pred             ccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHH
Q 029158           78 GFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQI  157 (198)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~  157 (198)
                      .+             +..+.......+|++++|+|+..+.......+++.....++|+++++||+|+..... ....+.+
T Consensus        82 ~d-------------f~~~~~~~l~~aD~~IlVvda~~g~~~~~~~i~~~~~~~~~P~iivvNK~D~~~a~~-~~~~~~l  147 (267)
T cd04169          82 ED-------------FSEDTYRTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRLRGIPIITFINKLDREGRDP-LELLDEI  147 (267)
T ss_pred             hH-------------HHHHHHHHHHHCCEEEEEEECCCCccHHHHHHHHHHHhcCCCEEEEEECCccCCCCH-HHHHHHH
Confidence            21             112222233448999999999987766566677777777899999999999876532 2334555


Q ss_pred             HHHH
Q 029158          158 EESL  161 (198)
Q Consensus       158 ~~~~  161 (198)
                      ++.+
T Consensus       148 ~~~l  151 (267)
T cd04169         148 EEEL  151 (267)
T ss_pred             HHHH
Confidence            5544

Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.

>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]

Probab=99.76  E-value=1.5e-17  Score=124.77  Aligned_cols=151  Identities=16%  Similarity=0.151  Sum_probs=117.6

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCccc-------------------------------eeecCCCCceeEEEE---EEe
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQWGV-------------------------------VRTSDKPGLTQTINF---FKL   65 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~-------------------------------~~~~~~~~~t~~~~~---~~~   65 (198)
                      ...+++-+|...-||||||.+|+...+.                               -....+++.|.++.+   ++.
T Consensus         5 ~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT~   84 (431)
T COG2895           5 SLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFSTE   84 (431)
T ss_pred             cceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecccc
Confidence            4578999999999999999999964200                               011224557777664   334


Q ss_pred             CCceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhC-CcEEEEEeccCC
Q 029158           66 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQ-TKYQVVLTKTDT  144 (198)
Q Consensus        66 ~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~-~p~iiv~nK~Dl  144 (198)
                      ...|.+.||||+             +.+.+.+..+...||++++++|+..|+.++.+.+.....-.+ ..+++.+||+||
T Consensus        85 KRkFIiADTPGH-------------eQYTRNMaTGASTadlAIlLVDAR~Gvl~QTrRHs~I~sLLGIrhvvvAVNKmDL  151 (431)
T COG2895          85 KRKFIIADTPGH-------------EQYTRNMATGASTADLAILLVDARKGVLEQTRRHSFIASLLGIRHVVVAVNKMDL  151 (431)
T ss_pred             cceEEEecCCcH-------------HHHhhhhhcccccccEEEEEEecchhhHHHhHHHHHHHHHhCCcEEEEEEeeecc
Confidence            788999999998             788889999999999999999999999888887755555556 457889999999


Q ss_pred             CCc--HHHHHHHHHHHHHHHhccCCCCCcEEeccCCCCChH
Q 029158          145 VFP--IDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIR  183 (198)
Q Consensus       145 ~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~~~gi~  183 (198)
                      .+-  +..+.+...+.............++|+||..|+|+-
T Consensus       152 vdy~e~~F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~  192 (431)
T COG2895         152 VDYSEEVFEAIVADYLAFAAQLGLKDVRFIPISALLGDNVV  192 (431)
T ss_pred             cccCHHHHHHHHHHHHHHHHHcCCCcceEEechhccCCccc
Confidence            864  345566677777777777667899999999998864

>PRK00741 prfC peptide chain release factor 3; Provisional

Probab=99.76  E-value=2.7e-17  Score=133.58  Aligned_cols=115  Identities=20%  Similarity=0.260  Sum_probs=79.3

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCc-cce---ee----------cCC------CCceeE---EEEEEeCCceEEEeCC
Q 029158           19 PDLPEIAFAGRSNVGKSSMLNALTRQW-GVV---RT----------SDK------PGLTQT---INFFKLGTKLCLVDLP   75 (198)
Q Consensus        19 ~~~~~v~~vG~~~~GKSsli~~l~~~~-~~~---~~----------~~~------~~~t~~---~~~~~~~~~~~iiDtp   75 (198)
                      ....+|+++|++++|||||+++|+... .+.   .+          .++      .+.+..   ..+...+..+.+||||
T Consensus         8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTP   87 (526)
T PRK00741          8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTP   87 (526)
T ss_pred             hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECC
Confidence            467899999999999999999997421 010   10          000      111111   2244446789999999


Q ss_pred             CCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCC
Q 029158           76 GYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF  146 (198)
Q Consensus        76 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~  146 (198)
                      |+.+             +..........+|++++|+|+..+.......++......++|+++++||+|+..
T Consensus        88 G~~d-------------f~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~iPiiv~iNK~D~~~  145 (526)
T PRK00741         88 GHED-------------FSEDTYRTLTAVDSALMVIDAAKGVEPQTRKLMEVCRLRDTPIFTFINKLDRDG  145 (526)
T ss_pred             Cchh-------------hHHHHHHHHHHCCEEEEEEecCCCCCHHHHHHHHHHHhcCCCEEEEEECCcccc
Confidence            9732             122222233448999999999988776667778777778999999999999865

>cd01899 Ygr210 Ygr210 subfamily

Probab=99.76  E-value=2.9e-17  Score=125.50  Aligned_cols=156  Identities=19%  Similarity=0.173  Sum_probs=103.7

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEE----E-----------------------EeCCceEEEeCCC
Q 029158           24 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF----F-----------------------KLGTKLCLVDLPG   76 (198)
Q Consensus        24 v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~----~-----------------------~~~~~~~iiDtpG   76 (198)
                      |+++|.|++|||||+|+|++..  ..+.+++++|.+...    .                       ....++++|||||
T Consensus         1 i~ivG~pnvGKStLfn~lt~~~--~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aG   78 (318)
T cd01899           1 IGLVGKPNAGKSTFFNAATLAD--VEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAG   78 (318)
T ss_pred             CEEECCCCCCHHHHHHHHhCCC--CcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCC
Confidence            5799999999999999999984  567888888865331    1                       0124689999999


Q ss_pred             CccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC-------------cCcHH-----H--------------
Q 029158           77 YGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVK-------------PRDHE-----L--------------  124 (198)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~-------------~~~~~-----~--------------  124 (198)
                      +......      ...+..+++...+.+|++++|+|+.....             ..+.+     +              
T Consensus        79 lv~ga~~------~~glg~~fL~~ir~aD~ii~Vvd~~~~~d~~~~~~~~~~~dp~~d~~~i~~El~~~d~~~~~~~~~~  152 (318)
T cd01899          79 LVPGAHE------GKGLGNKFLDDLRDADALIHVVDASGGTDAEGNGVETGGHDPLEDIEFLENEIDMWIYGILEKNWEK  152 (318)
T ss_pred             CCCCccc------hhhHHHHHHHHHHHCCEEEEEEeCCCCcccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8543211      13345566666777999999999974100             00100     0              


Q ss_pred             ------------------------------HHHH------------------------HhhCCcEEEEEeccCCCCcHHH
Q 029158          125 ------------------------------ISLM------------------------ERSQTKYQVVLTKTDTVFPIDV  150 (198)
Q Consensus       125 ------------------------------~~~~------------------------~~~~~p~iiv~nK~Dl~~~~~~  150 (198)
                                                    ...+                        ....+|+|+|+||.|+....+.
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~llt~KPvI~VlNK~Dl~~~~~~  232 (318)
T cd01899         153 IVRKADAEKTDIVEALSEQLSGFGVNEKDVIEALEELELPEDLSKWTDEDLLRLARALRKRSKPMVIAANKADIPDAENN  232 (318)
T ss_pred             HHHHHhcCCccHHHHHHHHHhhccccHHHHHHHHHhCCCCCcccCCCHHHHHHHHHHHHhcCCcEEEEEEHHHccChHHH
Confidence                                          0000                        0113599999999998654432


Q ss_pred             HHHHHHHHHHHHhccCCCCCcEEeccCCCCChHHHHH-HHHHhhcc
Q 029158          151 ARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRT-VLSKIARF  195 (198)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~v~~~Sa~~~~gi~~l~~-~i~~~~~~  195 (198)
                      .   +.++..     ....+++++||+.+.+++++.+ .+.++++.
T Consensus       233 ~---~~l~~~-----~~~~~iI~iSA~~e~~L~~L~~~~i~~~lPe  270 (318)
T cd01899         233 I---SKLRLK-----YPDEIVVPTSAEAELALRRAAKQGLIKYDPG  270 (318)
T ss_pred             H---HHHHhh-----CCCCeEEEEeCcccccHHHHHHhhHHHhCCC
Confidence            2   222221     1246799999999999999998 68887753

Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.

>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.76  E-value=7.3e-18  Score=117.83  Aligned_cols=148  Identities=18%  Similarity=0.133  Sum_probs=104.5

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEE-------eCCceEEEeCCCCccccchhHHHHHHHHH
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK-------LGTKLCLVDLPGYGFAYAKEEVKDAWEEL   93 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~-------~~~~~~iiDtpG~~~~~~~~~~~~~~~~~   93 (198)
                      ..+|+++|.+++|||-|+.++...+    .....-.|..+.+..       .....+||||+|.          +++..+
T Consensus        14 lFKiVliGDS~VGKsnLlsRftrnE----F~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQ----------ERyrAi   79 (222)
T KOG0087|consen   14 LFKIVLIGDSAVGKSNLLSRFTRNE----FSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQ----------ERYRAI   79 (222)
T ss_pred             EEEEEEeCCCccchhHHHHHhcccc----cCcccccceeEEEEeeceeecCcEEEEeeecccch----------hhhccc
Confidence            5679999999999999999999875    333333444444333       3457899999994          555666


Q ss_pred             HHHHHhcccccceEEEEEeCCCCCCc-CcHHHHHHHHhh---CCcEEEEEeccCCCCcHHHHH-HHHHHHHHHHhccCCC
Q 029158           94 VKEYVSTRVSLKRVCLLIDTKWGVKP-RDHELISLMERS---QTKYQVVLTKTDTVFPIDVAR-RAMQIEESLKANNSLV  168 (198)
Q Consensus        94 ~~~~~~~~~~~d~vi~v~d~~~~~~~-~~~~~~~~~~~~---~~p~iiv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~  168 (198)
                      ...|++.   +-++++|.|.+...+- .-..|++.++.+   ++++++|+||+||..-..... ....+++      ..+
T Consensus        80 tSaYYrg---AvGAllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~lraV~te~~k~~Ae------~~~  150 (222)
T KOG0087|consen   80 TSAYYRG---AVGALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNHLRAVPTEDGKAFAE------KEG  150 (222)
T ss_pred             cchhhcc---cceeEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhhccccchhhhHhHHH------hcC
Confidence            7777777   7889999999753332 335677777765   689999999999976322211 1112221      125


Q ss_pred             CCcEEeccCCCCChHHHHHHHHH
Q 029158          169 QPVMMVSSKSGAGIRSLRTVLSK  191 (198)
Q Consensus       169 ~~v~~~Sa~~~~gi~~l~~~i~~  191 (198)
                      ..++++||.++.|++..|+.+..
T Consensus       151 l~f~EtSAl~~tNVe~aF~~~l~  173 (222)
T KOG0087|consen  151 LFFLETSALDATNVEKAFERVLT  173 (222)
T ss_pred             ceEEEecccccccHHHHHHHHHH
Confidence            78999999999999999976654

>PRK13351 elongation factor G; Reviewed

Probab=99.75  E-value=2.4e-17  Score=138.76  Aligned_cols=118  Identities=19%  Similarity=0.230  Sum_probs=82.0

Q ss_pred             CCCCCCeEEEEcCCCCCHHHHHHHHhcCccc----ee------ecC------CCCceeE---EEEEEeCCceEEEeCCCC
Q 029158           17 PAPDLPEIAFAGRSNVGKSSMLNALTRQWGV----VR------TSD------KPGLTQT---INFFKLGTKLCLVDLPGY   77 (198)
Q Consensus        17 ~~~~~~~v~~vG~~~~GKSsli~~l~~~~~~----~~------~~~------~~~~t~~---~~~~~~~~~~~iiDtpG~   77 (198)
                      +....++|+++|..|+|||||+++|+.....    ..      ..+      ..+.|..   ..+...+..+.+|||||+
T Consensus         4 ~~~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~   83 (687)
T PRK13351          4 PLMQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGH   83 (687)
T ss_pred             ccccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCc
Confidence            4456789999999999999999999853210    00      000      1222322   223334678999999997


Q ss_pred             ccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCc
Q 029158           78 GFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFP  147 (198)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~  147 (198)
                      .+             +..+.......+|++++|+|+..+........+..+...++|+++++||+|+...
T Consensus        84 ~d-------------f~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~~~  140 (687)
T PRK13351         84 ID-------------FTGEVERSLRVLDGAVVVFDAVTGVQPQTETVWRQADRYGIPRLIFINKMDRVGA  140 (687)
T ss_pred             HH-------------HHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEECCCCCCC
Confidence            32             1222223334489999999999887777777788887778999999999998864

>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=99.75  E-value=4.8e-17  Score=125.44  Aligned_cols=156  Identities=23%  Similarity=0.346  Sum_probs=130.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCc-cceeecCCCCceeEEEEEEe---CCceEEEeCCCCccccchhHHHHHHHHHHHHHH
Q 029158           23 EIAFAGRSNVGKSSMLNALTRQW-GVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV   98 (198)
Q Consensus        23 ~v~~vG~~~~GKSsli~~l~~~~-~~~~~~~~~~~t~~~~~~~~---~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~   98 (198)
                      .|+..|.-..|||||+.++.+.. .........++|.+..+++.   +..+.|+|.||+             ++++..++
T Consensus         2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh-------------~~~i~~mi   68 (447)
T COG3276           2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGH-------------PDFISNLL   68 (447)
T ss_pred             eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCc-------------HHHHHHHH
Confidence            46788999999999999999863 23344456789999988775   568999999998             77888999


Q ss_pred             hcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCc-EEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEeccC
Q 029158           99 STRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSK  177 (198)
Q Consensus        99 ~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~  177 (198)
                      .+....|.+++|+|+.+|+..++.+++..+...+.+ .++|+||+|+.++...+....++.+...   ....++|.+|++
T Consensus        69 ag~~~~d~alLvV~~deGl~~qtgEhL~iLdllgi~~giivltk~D~~d~~r~e~~i~~Il~~l~---l~~~~i~~~s~~  145 (447)
T COG3276          69 AGLGGIDYALLVVAADEGLMAQTGEHLLILDLLGIKNGIIVLTKADRVDEARIEQKIKQILADLS---LANAKIFKTSAK  145 (447)
T ss_pred             hhhcCCceEEEEEeCccCcchhhHHHHHHHHhcCCCceEEEEeccccccHHHHHHHHHHHHhhcc---cccccccccccc
Confidence            998999999999999999999999999988888765 4999999999998766655555555444   446889999999


Q ss_pred             CCCChHHHHHHHHHhhc
Q 029158          178 SGAGIRSLRTVLSKIAR  194 (198)
Q Consensus       178 ~~~gi~~l~~~i~~~~~  194 (198)
                      +|+|+++|.+.|.+...
T Consensus       146 ~g~GI~~Lk~~l~~L~~  162 (447)
T COG3276         146 TGRGIEELKNELIDLLE  162 (447)
T ss_pred             cCCCHHHHHHHHHHhhh
Confidence            99999999999998773

>TIGR00503 prfC peptide chain release factor 3

Probab=99.74  E-value=9.1e-17  Score=130.50  Aligned_cols=115  Identities=18%  Similarity=0.284  Sum_probs=79.0

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCc-cce---eec----------C------CCCceeE---EEEEEeCCceEEEeCC
Q 029158           19 PDLPEIAFAGRSNVGKSSMLNALTRQW-GVV---RTS----------D------KPGLTQT---INFFKLGTKLCLVDLP   75 (198)
Q Consensus        19 ~~~~~v~~vG~~~~GKSsli~~l~~~~-~~~---~~~----------~------~~~~t~~---~~~~~~~~~~~iiDtp   75 (198)
                      ...++|+++|.+++|||||+++|+... .+.   .+.          +      ..+.+..   ..+...+..+.+||||
T Consensus         9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTP   88 (527)
T TIGR00503         9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTP   88 (527)
T ss_pred             ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECC
Confidence            467899999999999999999986421 111   110          0      0112221   2233447889999999


Q ss_pred             CCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCC
Q 029158           76 GYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF  146 (198)
Q Consensus        76 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~  146 (198)
                      |+.             ++..........+|++++|+|+..++......+++.+...+.|+++++||+|+..
T Consensus        89 G~~-------------df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~~PiivviNKiD~~~  146 (527)
T TIGR00503        89 GHE-------------DFSEDTYRTLTAVDNCLMVIDAAKGVETRTRKLMEVTRLRDTPIFTFMNKLDRDI  146 (527)
T ss_pred             Chh-------------hHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECccccC
Confidence            972             2222233333459999999999988776667777777777899999999999863

This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.

>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria

Probab=99.74  E-value=7.6e-17  Score=117.34  Aligned_cols=167  Identities=16%  Similarity=0.170  Sum_probs=103.4

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEE---EEeCCceEEEeCCCCccccchhHHHHHHHHHHHHHH
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF---FKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV   98 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~---~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~   98 (198)
                      .+|+++|.+|+||||++|.|++...........+.|.....   ...+..+.++||||+.+.....  .+....+.+.+.
T Consensus         1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~~--~~~~~~i~~~l~   78 (212)
T PF04548_consen    1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDGSD--EEIIREIKRCLS   78 (212)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEEEEEEE--SSEETTEEH--HHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceEEEEEeCCCCCCCcccH--HHHHHHHHHHHH
Confidence            37999999999999999999998532222223334443332   2347889999999997764332  122233333333


Q ss_pred             hcccccceEEEEEeCCCCCCcCcHHHHHHHHhh-----CCcEEEEEeccCCCCcHHHHHHHH-----HHHHHHHhccCCC
Q 029158           99 STRVSLKRVCLLIDTKWGVKPRDHELISLMERS-----QTKYQVVLTKTDTVFPIDVARRAM-----QIEESLKANNSLV  168 (198)
Q Consensus        99 ~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~-----~~p~iiv~nK~Dl~~~~~~~~~~~-----~~~~~~~~~~~~~  168 (198)
                      ......+++++|++.. .+...+...++.+...     -..+++|+|.+|...+...++...     .+++.+...   +
T Consensus        79 ~~~~g~ha~llVi~~~-r~t~~~~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c---~  154 (212)
T PF04548_consen   79 LCSPGPHAFLLVIPLG-RFTEEDREVLELLQEIFGEEIWKHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKC---G  154 (212)
T ss_dssp             HTTT-ESEEEEEEETT-B-SHHHHHHHHHHHHHHCGGGGGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHT---T
T ss_pred             hccCCCeEEEEEEecC-cchHHHHHHHHHHHHHccHHHHhHhhHHhhhccccccccHHHHHhccCchhHhHHhhhc---C
Confidence            3445689999999998 6777787777776642     357999999999887766544433     244444433   3


Q ss_pred             CCcEEeccC------CCCChHHHHHHHHHhhc
Q 029158          169 QPVMMVSSK------SGAGIRSLRTVLSKIAR  194 (198)
Q Consensus       169 ~~v~~~Sa~------~~~gi~~l~~~i~~~~~  194 (198)
                      .+++.++.+      ....+.+|++.|.+.++
T Consensus       155 ~R~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~  186 (212)
T PF04548_consen  155 GRYHVFNNKTKDKEKDESQVSELLEKIEEMVQ  186 (212)
T ss_dssp             TCEEECCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEEeccccchhhhHHHHHHHHHHHHHHHH
Confidence            467777766      34567777777766544

The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....

>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence

Probab=99.74  E-value=3.1e-17  Score=126.41  Aligned_cols=166  Identities=23%  Similarity=0.185  Sum_probs=98.8

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCc---cceeecCCCCceeEEEEEEe--CCceEEEeCCCCccccchhHHHHHHHHHH
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQW---GVVRTSDKPGLTQTINFFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELV   94 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~~---~~~~~~~~~~~t~~~~~~~~--~~~~~iiDtpG~~~~~~~~~~~~~~~~~~   94 (198)
                      ...+|+|+|.+|+|||||||+|.+-.   .-+...+...||....-+..  -+++++||.||+|...-          -.
T Consensus        34 ~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~~pnv~lWDlPG~gt~~f----------~~  103 (376)
T PF05049_consen   34 APLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPKFPNVTLWDLPGIGTPNF----------PP  103 (376)
T ss_dssp             --EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS-TTEEEEEE--GGGSS------------H
T ss_pred             CceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCCCCCCeEEeCCCCCCCCC----------CH
Confidence            45789999999999999999998631   11111112234444443333  36899999999876421          12


Q ss_pred             HHHHhc--ccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCC-c------------HHHHHHHHHHHH
Q 029158           95 KEYVST--RVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF-P------------IDVARRAMQIEE  159 (198)
Q Consensus        95 ~~~~~~--~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~-~------------~~~~~~~~~~~~  159 (198)
                      ..|+..  ....|.++++.+..  +...+.++.+.++..++|+++|-||+|..- .            .-++++.+.+.+
T Consensus       104 ~~Yl~~~~~~~yD~fiii~s~r--f~~ndv~La~~i~~~gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~  181 (376)
T PF05049_consen  104 EEYLKEVKFYRYDFFIIISSER--FTENDVQLAKEIQRMGKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLE  181 (376)
T ss_dssp             HHHHHHTTGGG-SEEEEEESSS----HHHHHHHHHHHHTT-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHH
T ss_pred             HHHHHHccccccCEEEEEeCCC--CchhhHHHHHHHHHcCCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHH
Confidence            233332  23478766666554  688888899999999999999999999611 1            113445555666


Q ss_pred             HHHhccCCCCCcEEeccCC--CCChHHHHHHHHHhhcccc
Q 029158          160 SLKANNSLVQPVMMVSSKS--GAGIRSLRTVLSKIARFAK  197 (198)
Q Consensus       160 ~~~~~~~~~~~v~~~Sa~~--~~gi~~l~~~i~~~~~~~r  197 (198)
                      .++.......++|.+|+.+  ..++..|.+.+.+.++..|
T Consensus       182 ~L~k~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~K  221 (376)
T PF05049_consen  182 NLQKAGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAHK  221 (376)
T ss_dssp             HHHCTT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GGG
T ss_pred             HHHHcCCCcCceEEEeCCCcccCChHHHHHHHHHHhHHHH
Confidence            6665555567899999976  5678889999988777654

IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.

>PRK13768 GTPase; Provisional

Probab=99.74  E-value=6.3e-17  Score=120.60  Aligned_cols=123  Identities=25%  Similarity=0.314  Sum_probs=80.4

Q ss_pred             CceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHH-----hhCCcEEEEEec
Q 029158           67 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLME-----RSQTKYQVVLTK  141 (198)
Q Consensus        67 ~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~-----~~~~p~iiv~nK  141 (198)
                      .++.++||||..+...   .+..+..+.+.+... . .+++++|+|++......+......+.     ..+.|+++|+||
T Consensus        97 ~~~~~~d~~g~~~~~~---~~~~~~~~~~~l~~~-~-~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK  171 (253)
T PRK13768         97 ADYVLVDTPGQMELFA---FRESGRKLVERLSGS-S-KSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNK  171 (253)
T ss_pred             CCEEEEeCCcHHHHHh---hhHHHHHHHHHHHhc-C-CeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEh
Confidence            4799999999644221   122223333332222 2 78999999998755555544333222     458999999999


Q ss_pred             cCCCCcHHHHHHHHHHHH------------------------HHHhccCCCCCcEEeccCCCCChHHHHHHHHHhhcc
Q 029158          142 TDTVFPIDVARRAMQIEE------------------------SLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIARF  195 (198)
Q Consensus       142 ~Dl~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~v~~~Sa~~~~gi~~l~~~i~~~~~~  195 (198)
                      +|+....+.++....+..                        .+.. .....+++++|+++++|++++.++|.+.+..
T Consensus       172 ~D~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~-~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~~  248 (253)
T PRK13768        172 ADLLSEEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEE-TGLPVRVIPVSAKTGEGFDELYAAIQEVFCG  248 (253)
T ss_pred             HhhcCchhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHH-HCCCCcEEEEECCCCcCHHHHHHHHHHHcCC
Confidence            999987665544443331                        1111 1224689999999999999999999988754

>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.74  E-value=2.5e-16  Score=104.29  Aligned_cols=149  Identities=19%  Similarity=0.213  Sum_probs=103.9

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE-------EEEeCCceEEEeCCCCccccchhHHHHHHHHH
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN-------FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEEL   93 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~-------~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~   93 (198)
                      ..+|+++|..|+|||.|++++...-    ..+..+.|..+.       +......+++|||+|          ++.+..+
T Consensus         7 lfkivlvgnagvgktclvrrftqgl----fppgqgatigvdfmiktvev~gekiklqiwdtag----------qerfrsi   72 (213)
T KOG0095|consen    7 LFKIVLVGNAGVGKTCLVRRFTQGL----FPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAG----------QERFRSI   72 (213)
T ss_pred             eEEEEEEccCCcCcchhhhhhhccC----CCCCCCceeeeeEEEEEEEECCeEEEEEEeeccc----------hHHHHHH
Confidence            4689999999999999999998762    333344444332       222346799999999          3666777


Q ss_pred             HHHHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHhh---CCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCC
Q 029158           94 VKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS---QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQ  169 (198)
Q Consensus        94 ~~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~~---~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  169 (198)
                      ...|++.   +++++++.|.+..++-.- -+|+..++.+   ++--|+|.||+|+.+..+..   +++-+.+....  ..
T Consensus        73 tqsyyrs---ahalilvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~drrevp---~qigeefs~~q--dm  144 (213)
T KOG0095|consen   73 TQSYYRS---AHALILVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLADRREVP---QQIGEEFSEAQ--DM  144 (213)
T ss_pred             HHHHhhh---cceEEEEEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhhhhhhh---HHHHHHHHHhh--hh
Confidence            7777776   889999999987433322 3566666654   34558999999998765433   33333333221  24


Q ss_pred             CcEEeccCCCCChHHHHHHHHH
Q 029158          170 PVMMVSSKSGAGIRSLRTVLSK  191 (198)
Q Consensus       170 ~v~~~Sa~~~~gi~~l~~~i~~  191 (198)
                      -++++||+..+|++.||..+..
T Consensus       145 yfletsakea~nve~lf~~~a~  166 (213)
T KOG0095|consen  145 YFLETSAKEADNVEKLFLDLAC  166 (213)
T ss_pred             hhhhhcccchhhHHHHHHHHHH
Confidence            4789999999999999987654

>PRK09602 translation-associated GTPase; Reviewed

Probab=99.73  E-value=1.1e-16  Score=125.81  Aligned_cols=85  Identities=22%  Similarity=0.213  Sum_probs=63.5

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEE---------------------------eCCceEEEeC
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---------------------------LGTKLCLVDL   74 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~---------------------------~~~~~~iiDt   74 (198)
                      .+|+++|.||+|||||+|+|++..  ....+++++|.+.....                           ...+++++||
T Consensus         2 ~kigivG~pnvGKSTlfn~Lt~~~--~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~   79 (396)
T PRK09602          2 ITIGLVGKPNVGKSTFFNAATLAD--VEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDV   79 (396)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCc--ccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEc
Confidence            579999999999999999999874  45678888886544211                           1246889999


Q ss_pred             CCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCC
Q 029158           75 PGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTK  114 (198)
Q Consensus        75 pG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~  114 (198)
                      ||+.......      ..+...++.....+|++++|+|+.
T Consensus        80 aGl~~ga~~g------~glg~~fL~~ir~ad~ll~Vvd~~  113 (396)
T PRK09602         80 AGLVPGAHEG------RGLGNQFLDDLRQADALIHVVDAS  113 (396)
T ss_pred             CCcCCCccch------hhHHHHHHHHHHHCCEEEEEEeCC
Confidence            9986542211      234556766777799999999997

>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.73  E-value=3.9e-17  Score=110.73  Aligned_cols=161  Identities=19%  Similarity=0.176  Sum_probs=108.0

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCccceeec---CCCCceeEEEEEE---eCCceEEEeCCCCccccchhHHHHHHHHHH
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTS---DKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELV   94 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~---~~~~~t~~~~~~~---~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~   94 (198)
                      ...|+++|.-+||||||+.++-.........   ....+|......+   ....+.+||.-|.      ...+..|+.  
T Consensus        17 ~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v~~~~l~fwdlgGQ------e~lrSlw~~--   88 (197)
T KOG0076|consen   17 DYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEVCNAPLSFWDLGGQ------ESLRSLWKK--   88 (197)
T ss_pred             hhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceeeccceeEEEEcCCh------HHHHHHHHH--
Confidence            3458999999999999999876542111111   1112333333322   2577999999993      334444444  


Q ss_pred             HHHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHH----hhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCC
Q 029158           95 KEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLME----RSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQ  169 (198)
Q Consensus        95 ~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~----~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  169 (198)
                        |+..   +++++|++|+...-.-.+ ...++.+.    ..+.|+++.+||.|+.+..+..++...+.. .........
T Consensus        89 --yY~~---~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~~~El~~~~~~-~e~~~~rd~  162 (197)
T KOG0076|consen   89 --YYWL---AHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAMEAAELDGVFGL-AELIPRRDN  162 (197)
T ss_pred             --HHHH---hceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhhHHHHHHHhhh-hhhcCCccC
Confidence              4444   899999999987211111 11122222    237999999999999887776666555554 455667789


Q ss_pred             CcEEeccCCCCChHHHHHHHHHhhcc
Q 029158          170 PVMMVSSKSGAGIRSLRTVLSKIARF  195 (198)
Q Consensus       170 ~v~~~Sa~~~~gi~~l~~~i~~~~~~  195 (198)
                      ++.++||.+|+|+++-..|+...+..
T Consensus       163 ~~~pvSal~gegv~egi~w~v~~~~k  188 (197)
T KOG0076|consen  163 PFQPVSALTGEGVKEGIEWLVKKLEK  188 (197)
T ss_pred             ccccchhhhcccHHHHHHHHHHHHhh
Confidence            99999999999999999999887654

>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]

Probab=99.73  E-value=6.2e-17  Score=104.04  Aligned_cols=143  Identities=20%  Similarity=0.243  Sum_probs=97.7

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHHHHhcc
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTR  101 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~  101 (198)
                      .+++++|+.|+|||||.++|-+.+..      .-.|+.+++...+    .+||||--..      +   ..+....+...
T Consensus         2 Kri~~vG~~gcGKTtL~q~L~G~~~l------ykKTQAve~~d~~----~IDTPGEy~~------~---~~~Y~aL~tt~   62 (148)
T COG4917           2 KRIAFVGQVGCGKTTLFQSLYGNDTL------YKKTQAVEFNDKG----DIDTPGEYFE------H---PRWYHALITTL   62 (148)
T ss_pred             ceeEEecccccCchhHHHHhhcchhh------hcccceeeccCcc----ccCCchhhhh------h---hHHHHHHHHHh
Confidence            57999999999999999999987411      1134555554433    3999993110      1   22223344445


Q ss_pred             cccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEeccCCCCC
Q 029158          102 VSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAG  181 (198)
Q Consensus       102 ~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~~~g  181 (198)
                      ..+|.+++|..+.++.+.-.-   ..+.....|+|-|++|.|+.+..+.+.....+.+.-      ..++|.+|+.+..|
T Consensus        63 ~dadvi~~v~~and~~s~f~p---~f~~~~~k~vIgvVTK~DLaed~dI~~~~~~L~eaG------a~~IF~~s~~d~~g  133 (148)
T COG4917          63 QDADVIIYVHAANDPESRFPP---GFLDIGVKKVIGVVTKADLAEDADISLVKRWLREAG------AEPIFETSAVDNQG  133 (148)
T ss_pred             hccceeeeeecccCccccCCc---ccccccccceEEEEecccccchHhHHHHHHHHHHcC------CcceEEEeccCccc
Confidence            568999999888764322221   112233567999999999998766655555555442      47899999999999


Q ss_pred             hHHHHHHHHHh
Q 029158          182 IRSLRTVLSKI  192 (198)
Q Consensus       182 i~~l~~~i~~~  192 (198)
                      +++|++++...
T Consensus       134 v~~l~~~L~~~  144 (148)
T COG4917         134 VEELVDYLASL  144 (148)
T ss_pred             HHHHHHHHHhh
Confidence            99999998754

>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.72  E-value=1.9e-16  Score=104.60  Aligned_cols=151  Identities=18%  Similarity=0.197  Sum_probs=99.5

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEE-----EEEEe--CCceEEEeCCCCccccchhHHHHHHHHH
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI-----NFFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEEL   93 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~-----~~~~~--~~~~~iiDtpG~~~~~~~~~~~~~~~~~   93 (198)
                      ..+++++|.+.+|||||+.+.++.. .   .+....|..+     +++..  ...+++|||.|.          +.+..+
T Consensus        21 mfKlliiGnssvGKTSfl~ry~ddS-F---t~afvsTvGidFKvKTvyr~~kRiklQiwDTagq----------Eryrti   86 (193)
T KOG0093|consen   21 MFKLLIIGNSSVGKTSFLFRYADDS-F---TSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQ----------ERYRTI   86 (193)
T ss_pred             eeeEEEEccCCccchhhhHHhhccc-c---ccceeeeeeeeEEEeEeeecccEEEEEEEecccc----------hhhhHH
Confidence            5699999999999999999999873 1   1111222222     22222  467999999995          233444


Q ss_pred             HHHHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHH---hhCCcEEEEEeccCCCCcHHHH-HHHHHHHHHHHhccCCC
Q 029158           94 VKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLME---RSQTKYQVVLTKTDTVFPIDVA-RRAMQIEESLKANNSLV  168 (198)
Q Consensus        94 ~~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~---~~~~p~iiv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~  168 (198)
                      .-.|+++   ++++++++|.....+-+. ..|.-++.   ..+.|+|+|.||||+.++.... +....+.+.+      +
T Consensus        87 TTayyRg---amgfiLmyDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~eRvis~e~g~~l~~~L------G  157 (193)
T KOG0093|consen   87 TTAYYRG---AMGFILMYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSERVISHERGRQLADQL------G  157 (193)
T ss_pred             HHHHhhc---cceEEEEEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCccceeeeHHHHHHHHHHh------C
Confidence            4455555   899999999976322111 22322232   2378999999999998764321 1112222222      4


Q ss_pred             CCcEEeccCCCCChHHHHHHHHHhhc
Q 029158          169 QPVMMVSSKSGAGIRSLRTVLSKIAR  194 (198)
Q Consensus       169 ~~v~~~Sa~~~~gi~~l~~~i~~~~~  194 (198)
                      ..+|++|||.+-|++++++.+...+.
T Consensus       158 fefFEtSaK~NinVk~~Fe~lv~~Ic  183 (193)
T KOG0093|consen  158 FEFFETSAKENINVKQVFERLVDIIC  183 (193)
T ss_pred             hHHhhhcccccccHHHHHHHHHHHHH
Confidence            68999999999999999998877654

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=99.72  E-value=4.7e-16  Score=113.84  Aligned_cols=156  Identities=17%  Similarity=0.169  Sum_probs=98.5

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCcee--EEEEEEe----CCceEEEeCCCCccccchhHHHHHHHHHHH
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQ--TINFFKL----GTKLCLVDLPGYGFAYAKEEVKDAWEELVK   95 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~--~~~~~~~----~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~   95 (198)
                      .+|+++|++|+|||||+++|.+..   ....++.+..  .......    ...+.+|||+|.          +.+..+..
T Consensus         6 ~kivv~G~~g~GKTtl~~~l~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq----------~~~~~~~~   72 (219)
T COG1100           6 FKIVVLGDGGVGKTTLLNRLVGDE---FPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQ----------EEYRSLRP   72 (219)
T ss_pred             EEEEEEcCCCccHHHHHHHHhcCc---CcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCH----------HHHHHHHH
Confidence            789999999999999999999883   2222222211  1111111    244899999995          23344455


Q ss_pred             HHHhcccccceEEEEEeCCC--CCCcCcHHHHHHHHhh---CCcEEEEEeccCCCCcHHHHHH----------HHHHHHH
Q 029158           96 EYVSTRVSLKRVCLLIDTKW--GVKPRDHELISLMERS---QTKYQVVLTKTDTVFPIDVARR----------AMQIEES  160 (198)
Q Consensus        96 ~~~~~~~~~d~vi~v~d~~~--~~~~~~~~~~~~~~~~---~~p~iiv~nK~Dl~~~~~~~~~----------~~~~~~~  160 (198)
                      .|+..   ++++++++|...  ........+...+...   +.|+++|.||+|+.........          .......
T Consensus        73 ~y~~~---~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (219)
T COG1100          73 EYYRG---ANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPK  149 (219)
T ss_pred             HHhcC---CCEEEEEEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhH
Confidence            55555   888999998875  2223334455555543   4899999999999876532211          1111111


Q ss_pred             HHhccCCCCCcEEeccC--CCCChHHHHHHHHHhh
Q 029158          161 LKANNSLVQPVMMVSSK--SGAGIRSLRTVLSKIA  193 (198)
Q Consensus       161 ~~~~~~~~~~v~~~Sa~--~~~gi~~l~~~i~~~~  193 (198)
                      ..........++.+|++  ++.++++++..+...+
T Consensus       150 ~~~~~~~~~~~~~~s~~~~~~~~v~~~~~~~~~~~  184 (219)
T COG1100         150 AVLPEVANPALLETSAKSLTGPNVNELFKELLRKL  184 (219)
T ss_pred             HhhhhhcccceeEeecccCCCcCHHHHHHHHHHHH
Confidence            11111112338999999  9999999999887765

>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.72  E-value=2.6e-17  Score=113.08  Aligned_cols=164  Identities=16%  Similarity=0.128  Sum_probs=109.3

Q ss_pred             CCCCCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEeCCceEEEeCCCCccccchhHHHHHHHHHHH
Q 029158           16 FPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVK   95 (198)
Q Consensus        16 ~~~~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~   95 (198)
                      .......+|+++|--+|||||++..|-..+.+. ..+..+.... .+...+.++.+||..|...      .    ..+..
T Consensus        12 ~~~~~e~~IlmlGLD~AGKTTILykLk~~E~vt-tvPTiGfnVE-~v~ykn~~f~vWDvGGq~k------~----R~lW~   79 (181)
T KOG0070|consen   12 LFGKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TVPTIGFNVE-TVEYKNISFTVWDVGGQEK------L----RPLWK   79 (181)
T ss_pred             ccCcceEEEEEEeccCCCceeeeEeeccCCccc-CCCcccccee-EEEEcceEEEEEecCCCcc------c----ccchh
Confidence            345567789999999999999999998774222 2222221111 2334478999999999521      1    23344


Q ss_pred             HHHhcccccceEEEEEeCCCCCC--cCcHHHHHHHHhh---CCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCC
Q 029158           96 EYVSTRVSLKRVCLLIDTKWGVK--PRDHELISLMERS---QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQP  170 (198)
Q Consensus        96 ~~~~~~~~~d~vi~v~d~~~~~~--~~~~~~~~~~~~~---~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (198)
                      .|+..   .+++|||+|+++...  +...++...+...   +.|+++.+||.|++.+-...++.+.+.-  .........
T Consensus        80 ~Y~~~---t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als~~ei~~~L~l--~~l~~~~w~  154 (181)
T KOG0070|consen   80 HYFQN---TQGLIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALSAAEITNKLGL--HSLRSRNWH  154 (181)
T ss_pred             hhccC---CcEEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCCHHHHHhHhhh--hccCCCCcE
Confidence            55554   899999999987322  2222333333322   6899999999999876555444443332  122334577


Q ss_pred             cEEeccCCCCChHHHHHHHHHhhccc
Q 029158          171 VMMVSSKSGAGIRSLRTVLSKIARFA  196 (198)
Q Consensus       171 v~~~Sa~~~~gi~~l~~~i~~~~~~~  196 (198)
                      +..++|.+|+|+.+.++|+.+.+...
T Consensus       155 iq~~~a~~G~GL~egl~wl~~~~~~~  180 (181)
T KOG0070|consen  155 IQSTCAISGEGLYEGLDWLSNNLKKR  180 (181)
T ss_pred             EeeccccccccHHHHHHHHHHHHhcc
Confidence            89999999999999999999987653

>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []

Probab=99.72  E-value=2.4e-16  Score=118.75  Aligned_cols=170  Identities=21%  Similarity=0.349  Sum_probs=98.4

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCccceeec-CCCC------ceeEEE-----EEE--eCCceEEEeCCCCccccchhH--
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTS-DKPG------LTQTIN-----FFK--LGTKLCLVDLPGYGFAYAKEE--   85 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~-~~~~------~t~~~~-----~~~--~~~~~~iiDtpG~~~~~~~~~--   85 (198)
                      .+|+++|.+|+|||||+|.|++.. +.... ..+.      .+..+.     ...  ...+++++||||+|+......  
T Consensus         5 fnImVvG~sG~GKTTFIntL~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~   83 (281)
T PF00735_consen    5 FNIMVVGESGLGKTTFINTLFNSD-IISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCW   83 (281)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHTSS----------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHhcc-cccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhh
Confidence            579999999999999999999973 22221 1111      111111     111  135789999999988654322  


Q ss_pred             --HHHHHHHHHHHHHhc----------ccccceEEEEEeCC-CCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHH
Q 029158           86 --VKDAWEELVKEYVST----------RVSLKRVCLLIDTK-WGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVAR  152 (198)
Q Consensus        86 --~~~~~~~~~~~~~~~----------~~~~d~vi~v~d~~-~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~  152 (198)
                        +...++.....++..          ....++++|+++++ +++...|.+.++.+.. .+++|.|+.|+|..+++++..
T Consensus        84 ~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~~mk~Ls~-~vNvIPvIaKaD~lt~~el~~  162 (281)
T PF00735_consen   84 EPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIEFMKRLSK-RVNVIPVIAKADTLTPEELQA  162 (281)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHHHHHHHTT-TSEEEEEESTGGGS-HHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHHHHHHhcc-cccEEeEEecccccCHHHHHH
Confidence              212222222223221          12368899999975 4788888998998886 699999999999999999999


Q ss_pred             HHHHHHHHHHhccCCCCCcEEeccCCCCCh-HHHHHHHHHhhccc
Q 029158          153 RAMQIEESLKANNSLVQPVMMVSSKSGAGI-RSLRTVLSKIARFA  196 (198)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~v~~~Sa~~~~gi-~~l~~~i~~~~~~~  196 (198)
                      .+..+.+.+....   ++++.......+.- .+....+....+++
T Consensus       163 ~k~~i~~~l~~~~---I~~f~f~~~~~~~~e~~~~~~~~~~~PFa  204 (281)
T PF00735_consen  163 FKQRIREDLEENN---IKIFDFPEDDDDDEEIEENQKIRSMLPFA  204 (281)
T ss_dssp             HHHHHHHHHHHTT-----S----------HCHHHHHHHHHC-SEE
T ss_pred             HHHHHHHHHHHcC---ceeeccccccccccccccccccccceeeE
Confidence            9999999887653   55555433322110 23444555555543

Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.

>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.72  E-value=1.1e-16  Score=112.21  Aligned_cols=160  Identities=17%  Similarity=0.206  Sum_probs=103.8

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeE-EEEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHHHH
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT-INFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV   98 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~   98 (198)
                      ..+.|+++|+++||||+|+-.|.......   -+...+.. ..+.....+++++|.||+.          .....+.+++
T Consensus        37 ~~~~Vll~Gl~dSGKT~LF~qL~~gs~~~---TvtSiepn~a~~r~gs~~~~LVD~PGH~----------rlR~kl~e~~  103 (238)
T KOG0090|consen   37 KQNAVLLVGLSDSGKTSLFTQLITGSHRG---TVTSIEPNEATYRLGSENVTLVDLPGHS----------RLRRKLLEYL  103 (238)
T ss_pred             cCCcEEEEecCCCCceeeeeehhcCCccC---eeeeeccceeeEeecCcceEEEeCCCcH----------HHHHHHHHHc
Confidence            44679999999999999999998763111   11111111 2233334557999999962          2234455666


Q ss_pred             hcccccceEEEEEeCCCCCCcCc---HHHHHHHHh-----hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhcc-----
Q 029158           99 STRVSLKRVCLLIDTKWGVKPRD---HELISLMER-----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANN-----  165 (198)
Q Consensus        99 ~~~~~~d~vi~v~d~~~~~~~~~---~~~~~~~~~-----~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-----  165 (198)
                      .....+.+++||+|+........   ..+++.+..     ...|++++.||.|+..+...+.+.+.++..+....     
T Consensus       104 ~~~~~akaiVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa  183 (238)
T KOG0090|consen  104 KHNYSAKAIVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSA  183 (238)
T ss_pred             cccccceeEEEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhh
Confidence            66667899999999976322211   223344432     35899999999999987665555555444333111     


Q ss_pred             ----------------------------CCCCCcEEeccCCCCChHHHHHHHHHhh
Q 029158          166 ----------------------------SLVQPVMMVSSKSGAGIRSLRTVLSKIA  193 (198)
Q Consensus       166 ----------------------------~~~~~v~~~Sa~~~~gi~~l~~~i~~~~  193 (198)
                                                  ...+.+.+.|++++ +++++.+||.+.+
T Consensus       184 ~~~~~~ed~~~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~l  238 (238)
T KOG0090|consen  184 LRSISDEDIAKDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREAL  238 (238)
T ss_pred             hhccccccccccccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHhC
Confidence                                        01355888999998 8999999998764

>cd04102 RabL3 RabL3 (Rab-like3) subfamily

Probab=99.72  E-value=3.3e-16  Score=112.83  Aligned_cols=135  Identities=14%  Similarity=0.100  Sum_probs=82.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCccceeecCCCCce---eEEEEEE--------eCCceEEEeCCCCccccchhHHHHHHH
Q 029158           23 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT---QTINFFK--------LGTKLCLVDLPGYGFAYAKEEVKDAWE   91 (198)
Q Consensus        23 ~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t---~~~~~~~--------~~~~~~iiDtpG~~~~~~~~~~~~~~~   91 (198)
                      +|+++|.+|+|||||++++++...   ...+.+|.   .......        ....+.+|||+|..          .+.
T Consensus         2 KIvlvGd~gVGKTSLi~~~~~~~f---~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e----------~~~   68 (202)
T cd04102           2 RVLVVGDSGVGKSSLVHLICKNQV---LGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSE----------SVK   68 (202)
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCC---CCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCch----------hHH
Confidence            799999999999999999998742   22222221   1111111        12468999999952          224


Q ss_pred             HHHHHHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHh----------------------hCCcEEEEEeccCCCCcH
Q 029158           92 ELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----------------------SQTKYQVVLTKTDTVFPI  148 (198)
Q Consensus        92 ~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~----------------------~~~p~iiv~nK~Dl~~~~  148 (198)
                      .+...++..   +|++++|+|.++..+... ..|+..+..                      .+.|+++|+||+|+.+..
T Consensus        69 ~l~~~~yr~---ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r  145 (202)
T cd04102          69 STRAVFYNQ---VNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEK  145 (202)
T ss_pred             HHHHHHhCc---CCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhc
Confidence            444455554   899999999987433222 234444432                      258999999999997543


Q ss_pred             HHHH-----HHHHHHHHHHhccCCCCCcEEeccCCC
Q 029158          149 DVAR-----RAMQIEESLKANNSLVQPVMMVSSKSG  179 (198)
Q Consensus       149 ~~~~-----~~~~~~~~~~~~~~~~~~v~~~Sa~~~  179 (198)
                      ....     ....+.++      .+.+.+.++|...
T Consensus       146 ~~~~~~~~~~~~~ia~~------~~~~~i~~~c~~~  175 (202)
T cd04102         146 ESSGNLVLTARGFVAEQ------GNAEEINLNCTNG  175 (202)
T ss_pred             ccchHHHhhHhhhHHHh------cCCceEEEecCCc
Confidence            1111     11122221      2577888888754

RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.

>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.71  E-value=5.2e-16  Score=103.21  Aligned_cols=148  Identities=14%  Similarity=0.096  Sum_probs=97.7

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE-------EEEeCCceEEEeCCCCccccchhHHHHHHHHH
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN-------FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEEL   93 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~-------~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~   93 (198)
                      ..+++++|+.|+|||.|+.++...+.    .+....|..+.       +......++||||+|          ++.+...
T Consensus         9 LfKfl~iG~aGtGKSCLLh~Fie~kf----kDdssHTiGveFgSrIinVGgK~vKLQIWDTAG----------QErFRSV   74 (214)
T KOG0086|consen    9 LFKFLVIGSAGTGKSCLLHQFIENKF----KDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAG----------QERFRSV   74 (214)
T ss_pred             hheeEEeccCCCChhHHHHHHHHhhh----cccccceeeeeecceeeeecCcEEEEEEeeccc----------HHHHHHH
Confidence            46899999999999999999998742    22222333333       223346799999999          4677888


Q ss_pred             HHHHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHH---hhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCC
Q 029158           94 VKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLME---RSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQ  169 (198)
Q Consensus        94 ~~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~---~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  169 (198)
                      .+.|+++   +.+.++|.|+.+..+-+. ..|+...+   ..++-++++.||.|+....++.-  .+..+..+   ....
T Consensus        75 tRsYYRG---AAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~R~Vtf--lEAs~Faq---Enel  146 (214)
T KOG0086|consen   75 TRSYYRG---AAGALLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDPEREVTF--LEASRFAQ---ENEL  146 (214)
T ss_pred             HHHHhcc---ccceEEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcChhhhhhH--HHHHhhhc---ccce
Confidence            8889888   678899999976322111 12332222   22566788999999987654321  11112211   2235


Q ss_pred             CcEEeccCCCCChHHHHHHHH
Q 029158          170 PVMMVSSKSGAGIRSLRTVLS  190 (198)
Q Consensus       170 ~v~~~Sa~~~~gi~~l~~~i~  190 (198)
                      -++++||++|+|+++.|=...
T Consensus       147 ~flETSa~TGeNVEEaFl~c~  167 (214)
T KOG0086|consen  147 MFLETSALTGENVEEAFLKCA  167 (214)
T ss_pred             eeeeecccccccHHHHHHHHH
Confidence            789999999999999875443

>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=99.70  E-value=3.8e-17  Score=114.39  Aligned_cols=129  Identities=18%  Similarity=0.263  Sum_probs=69.6

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEE---eCCceEEEeCCCCccccchhHHHHHHHHHHHH
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE   96 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~   96 (198)
                      ..+.|+++|++|+|||+|...|..+.....+...   .....+..   .+..+.++|+||+..-.         ..+. +
T Consensus         2 k~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~---e~n~~~~~~~~~~~~~~lvD~PGH~rlr---------~~~~-~   68 (181)
T PF09439_consen    2 KRPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSM---ENNIAYNVNNSKGKKLRLVDIPGHPRLR---------SKLL-D   68 (181)
T ss_dssp             ---EEEEE-STTSSHHHHHHHHHHSS---B---S---SEEEECCGSSTCGTCECEEEETT-HCCC---------HHHH-H
T ss_pred             CCceEEEEcCCCCCHHHHHHHHhcCCcCCeeccc---cCCceEEeecCCCCEEEEEECCCcHHHH---------HHHH-H
Confidence            4578999999999999999999987422222221   11111111   25689999999974321         1112 1


Q ss_pred             HHhcccccceEEEEEeCCCCCCcCc----HHHHHHHH-----hhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHH
Q 029158           97 YVSTRVSLKRVCLLIDTKWGVKPRD----HELISLME-----RSQTKYQVVLTKTDTVFPIDVARRAMQIEESLK  162 (198)
Q Consensus        97 ~~~~~~~~d~vi~v~d~~~~~~~~~----~~~~~~~~-----~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~  162 (198)
                      .+.....+.+|+||+|++. ....-    ..+++.+.     ....|++++.||+|+........+...++..+.
T Consensus        69 ~~~~~~~~k~IIfvvDSs~-~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~~~~~Ik~~LE~Ei~  142 (181)
T PF09439_consen   69 ELKYLSNAKGIIFVVDSST-DQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAKPPKKIKKLLEKEID  142 (181)
T ss_dssp             HHHHHGGEEEEEEEEETTT-HHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT---HHHHHHHHHHHHH
T ss_pred             hhhchhhCCEEEEEEeCcc-chhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccCCHHHHHHHHHHHHH
Confidence            1112344899999999974 11111    12233332     236899999999999987655555555554443

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.

>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.70  E-value=2.5e-16  Score=103.20  Aligned_cols=156  Identities=17%  Similarity=0.156  Sum_probs=106.6

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEE-EEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHHHHh
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI-NFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS   99 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~-~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~   99 (198)
                      ..+|+++|-.++||||++..|+.......   .+.+.-.+ ++...+..+.+||..|.          +.+..+.+.|+.
T Consensus        17 E~~ilmlGLd~aGKTtiLyKLkl~~~~~~---ipTvGFnvetVtykN~kfNvwdvGGq----------d~iRplWrhYy~   83 (180)
T KOG0071|consen   17 EMRILMLGLDAAGKTTILYKLKLGQSVTT---IPTVGFNVETVTYKNVKFNVWDVGGQ----------DKIRPLWRHYYT   83 (180)
T ss_pred             cceEEEEecccCCceehhhHHhcCCCccc---ccccceeEEEEEeeeeEEeeeeccCc----------hhhhHHHHhhcc
Confidence            67899999999999999999988742221   11111111 23334677999999994          233566677777


Q ss_pred             cccccceEEEEEeCCCCCC--cCcHHHHHHHH---hhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEe
Q 029158          100 TRVSLKRVCLLIDTKWGVK--PRDHELISLME---RSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMV  174 (198)
Q Consensus       100 ~~~~~d~vi~v~d~~~~~~--~~~~~~~~~~~---~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  174 (198)
                      +   ..++|||+|+.+.-.  +...++...+.   -...++++.+||.|++.+-..+++...++-.  ...+...-+.++
T Consensus        84 g---tqglIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~pqei~d~leLe--~~r~~~W~vqp~  158 (180)
T KOG0071|consen   84 G---TQGLIFVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMKPQEIQDKLELE--RIRDRNWYVQPS  158 (180)
T ss_pred             C---CceEEEEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccCHHHHHHHhccc--cccCCccEeecc
Confidence            7   678999999976311  11122333332   2368999999999999876665555444422  133445668999


Q ss_pred             ccCCCCChHHHHHHHHHhhc
Q 029158          175 SSKSGAGIRSLRTVLSKIAR  194 (198)
Q Consensus       175 Sa~~~~gi~~l~~~i~~~~~  194 (198)
                      ||.+|.|+.+-+.|+...+.
T Consensus       159 ~a~~gdgL~eglswlsnn~~  178 (180)
T KOG0071|consen  159 CALSGDGLKEGLSWLSNNLK  178 (180)
T ss_pred             ccccchhHHHHHHHHHhhcc
Confidence            99999999999999998765

>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]

Probab=99.69  E-value=2.2e-15  Score=113.00  Aligned_cols=159  Identities=22%  Similarity=0.337  Sum_probs=118.8

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCccc-----eeecCCCCceeEEEEEEe------------CCceEEEeCCCCccccchh
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQWGV-----VRTSDKPGLTQTINFFKL------------GTKLCLVDLPGYGFAYAKE   84 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~~~~-----~~~~~~~~~t~~~~~~~~------------~~~~~iiDtpG~~~~~~~~   84 (198)
                      .++.++|...+|||||.++|..-..-     ...+.+.+.|.|..+...            ..+++++|+||+       
T Consensus         8 ~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGH-------   80 (522)
T KOG0461|consen    8 LNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGH-------   80 (522)
T ss_pred             eeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCc-------
Confidence            68999999999999999998754211     112223445555544442            236799999998       


Q ss_pred             HHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHH----HHHHHHHHHHH
Q 029158           85 EVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPID----VARRAMQIEES  160 (198)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~----~~~~~~~~~~~  160 (198)
                            ..+++..+.+....|+.++|+|+..|.+....+.+-.-+..-...++|+||.|...++.    .++....++..
T Consensus        81 ------asLIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~c~klvvvinkid~lpE~qr~ski~k~~kk~~Kt  154 (522)
T KOG0461|consen   81 ------ASLIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELLCKKLVVVINKIDVLPENQRASKIEKSAKKVRKT  154 (522)
T ss_pred             ------HHHHHHHHhhhheeeeeeEEEehhcccccccchhhhhhhhhccceEEEEeccccccchhhhhHHHHHHHHHHHH
Confidence                  67788899999999999999999999888887776555555567889999999887643    34455666666


Q ss_pred             HHhccCC-CCCcEEeccCCC----CChHHHHHHHHHhh
Q 029158          161 LKANNSL-VQPVMMVSSKSG----AGIRSLRTVLSKIA  193 (198)
Q Consensus       161 ~~~~~~~-~~~v~~~Sa~~~----~gi~~l~~~i~~~~  193 (198)
                      +...... ..|++++||..|    +++.+|.+.+.+.+
T Consensus       155 Le~t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~i  192 (522)
T KOG0461|consen  155 LESTGFDGNSPIVEVSAADGYFKEEMIQELKEALESRI  192 (522)
T ss_pred             HHhcCcCCCCceeEEecCCCccchhHHHHHHHHHHHhh
Confidence            6655533 489999999999    88888888887654

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=99.69  E-value=4e-15  Score=113.99  Aligned_cols=111  Identities=19%  Similarity=0.178  Sum_probs=74.5

Q ss_pred             CCceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCC
Q 029158           66 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV  145 (198)
Q Consensus        66 ~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~  145 (198)
                      +..+.|+||+|.+...         ....       ..+|.++++++...+   .+.+..+. .......++|+||+|+.
T Consensus       148 g~d~viieT~Gv~qs~---------~~i~-------~~aD~vlvv~~p~~g---d~iq~~k~-gi~E~aDIiVVNKaDl~  207 (332)
T PRK09435        148 GYDVILVETVGVGQSE---------TAVA-------GMVDFFLLLQLPGAG---DELQGIKK-GIMELADLIVINKADGD  207 (332)
T ss_pred             CCCEEEEECCCCccch---------hHHH-------HhCCEEEEEecCCch---HHHHHHHh-hhhhhhheEEeehhccc
Confidence            4689999999987431         1111       138999999874432   22222111 01123349999999999


Q ss_pred             CcHHHHHHHHHHHHHHHhcc----CCCCCcEEeccCCCCChHHHHHHHHHhhccc
Q 029158          146 FPIDVARRAMQIEESLKANN----SLVQPVMMVSSKSGAGIRSLRTVLSKIARFA  196 (198)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~----~~~~~v~~~Sa~~~~gi~~l~~~i~~~~~~~  196 (198)
                      ...........+...+....    ....|++++||+++.|+++|++.|.+++++.
T Consensus       208 ~~~~a~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~~l  262 (332)
T PRK09435        208 NKTAARRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRAAL  262 (332)
T ss_pred             chhHHHHHHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence            77666666666776665422    1236899999999999999999999987643

>PRK14845 translation initiation factor IF-2; Provisional

Probab=99.69  E-value=8.5e-16  Score=131.84  Aligned_cols=146  Identities=22%  Similarity=0.320  Sum_probs=97.5

Q ss_pred             CHHHHHHHHhcCccceeecCCCCceeEEEEEEe---------------------CCceEEEeCCCCccccchhHHHHHHH
Q 029158           33 GKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---------------------GTKLCLVDLPGYGFAYAKEEVKDAWE   91 (198)
Q Consensus        33 GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---------------------~~~~~iiDtpG~~~~~~~~~~~~~~~   91 (198)
                      +||||+.+|.+. .++ .....+.|+.+..+..                     .+.+.||||||+             .
T Consensus       473 ~KTtLLD~iR~t-~v~-~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGh-------------e  537 (1049)
T PRK14845        473 HNTTLLDKIRKT-RVA-KKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGH-------------E  537 (1049)
T ss_pred             ccccHHHHHhCC-Ccc-cccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCc-------------H
Confidence            499999999987 332 3333456665432211                     124899999996             2


Q ss_pred             HHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHH--------------HHHHHHHH
Q 029158           92 ELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPID--------------VARRAMQI  157 (198)
Q Consensus        92 ~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~--------------~~~~~~~~  157 (198)
                      .+..........+|++++|+|+++++...+.+.+..+...++|+++|+||+|+.....              .+....++
T Consensus       538 ~F~~lr~~g~~~aDivlLVVDa~~Gi~~qT~e~I~~lk~~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el  617 (1049)
T PRK14845        538 AFTSLRKRGGSLADLAVLVVDINEGFKPQTIEAINILRQYKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTEL  617 (1049)
T ss_pred             HHHHHHHhhcccCCEEEEEEECcccCCHhHHHHHHHHHHcCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHH
Confidence            2222222234558999999999998888888888888888899999999999964211              11112222


Q ss_pred             HHH-------HHh------------ccCCCCCcEEeccCCCCChHHHHHHHHHhh
Q 029158          158 EES-------LKA------------NNSLVQPVMMVSSKSGAGIRSLRTVLSKIA  193 (198)
Q Consensus       158 ~~~-------~~~------------~~~~~~~v~~~Sa~~~~gi~~l~~~i~~~~  193 (198)
                      ...       +..            ......+++++||++|+|+++|.++|....
T Consensus       618 ~~~l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~  672 (1049)
T PRK14845        618 EIKLYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLA  672 (1049)
T ss_pred             HHHHHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhh
Confidence            111       111            123367899999999999999999886543

>smart00053 DYNc Dynamin, GTPase

Probab=99.69  E-value=1.5e-15  Score=111.52  Aligned_cols=80  Identities=18%  Similarity=0.247  Sum_probs=62.5

Q ss_pred             CceEEEeCCCCcccc---chhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHhhCCcEEEEEecc
Q 029158           67 TKLCLVDLPGYGFAY---AKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERSQTKYQVVLTKT  142 (198)
Q Consensus        67 ~~~~iiDtpG~~~~~---~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~~~~p~iiv~nK~  142 (198)
                      .+++++||||+....   ........+..+...|+...  .+++++|+|++.++...+ .++.+.+...+.|+++|+||+
T Consensus       125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~--~~IIL~Vvda~~d~~~~d~l~ia~~ld~~~~rti~ViTK~  202 (240)
T smart00053      125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKE--ECLILAVTPANVDLANSDALKLAKEVDPQGERTIGVITKL  202 (240)
T ss_pred             CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCc--cCeEEEEEECCCCCCchhHHHHHHHHHHcCCcEEEEEECC
Confidence            589999999985431   12335566777777777753  458999999998888777 578888888899999999999


Q ss_pred             CCCCcH
Q 029158          143 DTVFPI  148 (198)
Q Consensus       143 Dl~~~~  148 (198)
                      |.....
T Consensus       203 D~~~~~  208 (240)
T smart00053      203 DLMDEG  208 (240)
T ss_pred             CCCCcc
Confidence            998754

Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.

>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]

Probab=99.69  E-value=5.1e-16  Score=120.35  Aligned_cols=162  Identities=21%  Similarity=0.196  Sum_probs=114.5

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCccceeecC---------------CCCceeE---EEEEEeCCceEEEeCCCCcccc
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSD---------------KPGLTQT---INFFKLGTKLCLVDLPGYGFAY   81 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~---------------~~~~t~~---~~~~~~~~~~~iiDtpG~~~~~   81 (198)
                      ...+|+++-....|||||+..|+.+. -....+               +.+.|.-   ..+.+.+..+.++||||+.+  
T Consensus         4 ~iRNIAIIAHVDHGKTTLVD~LLkQS-Gtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHAD--   80 (603)
T COG1217           4 DIRNIAIIAHVDHGKTTLVDALLKQS-GTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHAD--   80 (603)
T ss_pred             ccceeEEEEEecCCcchHHHHHHhhc-cccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCC--
Confidence            45689999999999999999999873 111111               2223321   23445578999999999743  


Q ss_pred             chhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHH---HHHHHHHH
Q 029158           82 AKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDV---ARRAMQIE  158 (198)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~---~~~~~~~~  158 (198)
                                 +--+..+-..-.|++++++||.+|+..+.+-+++.....+.+.|+|+||+|.+.+...   ++....+-
T Consensus        81 -----------FGGEVERvl~MVDgvlLlVDA~EGpMPQTrFVlkKAl~~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~  149 (603)
T COG1217          81 -----------FGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALALGLKPIVVINKIDRPDARPDEVVDEVFDLFV  149 (603)
T ss_pred             -----------ccchhhhhhhhcceEEEEEEcccCCCCchhhhHHHHHHcCCCcEEEEeCCCCCCCCHHHHHHHHHHHHH
Confidence                       1112222223389999999999999999999999888889999999999999876532   22222222


Q ss_pred             HHHHhccCCCCCcEEeccCCC----------CChHHHHHHHHHhhcc
Q 029158          159 ESLKANNSLVQPVMMVSSKSG----------AGIRSLRTVLSKIARF  195 (198)
Q Consensus       159 ~~~~~~~~~~~~v~~~Sa~~~----------~gi~~l~~~i~~~~~~  195 (198)
                      +.-........|+++.|+..|          .++.-||+.|.++++.
T Consensus       150 ~L~A~deQLdFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~  196 (603)
T COG1217         150 ELGATDEQLDFPIVYASARNGTASLDPEDEADDMAPLFETILDHVPA  196 (603)
T ss_pred             HhCCChhhCCCcEEEeeccCceeccCccccccchhHHHHHHHHhCCC
Confidence            222222233689999999876          6788899999998764

>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]

Probab=99.68  E-value=2.9e-16  Score=114.30  Aligned_cols=122  Identities=20%  Similarity=0.213  Sum_probs=76.5

Q ss_pred             ceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCc-----CcHHHHHHHHhhCCcEEEEEecc
Q 029158           68 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKP-----RDHELISLMERSQTKYQVVLTKT  142 (198)
Q Consensus        68 ~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~-----~~~~~~~~~~~~~~p~iiv~nK~  142 (198)
                      .+.++||||..+........    .++-+-+... ..-+++|++|+...-..     +.++....+-+.+.|.|+|.||+
T Consensus       117 ~~~liDTPGQIE~FtWSAsG----sIIte~lass-~ptvv~YvvDt~rs~~p~tFMSNMlYAcSilyktklp~ivvfNK~  191 (366)
T KOG1532|consen  117 DYVLIDTPGQIEAFTWSASG----SIITETLASS-FPTVVVYVVDTPRSTSPTTFMSNMLYACSILYKTKLPFIVVFNKT  191 (366)
T ss_pred             CEEEEcCCCceEEEEecCCc----cchHhhHhhc-CCeEEEEEecCCcCCCchhHHHHHHHHHHHHHhccCCeEEEEecc
Confidence            68999999987754322211    1111111111 14578999998663222     22344466667789999999999


Q ss_pred             CCCCcHHHHHHH---HHHHHHHHhcc------------------CCCCCcEEeccCCCCChHHHHHHHHHhhc
Q 029158          143 DTVFPIDVARRA---MQIEESLKANN------------------SLVQPVMMVSSKSGAGIRSLRTVLSKIAR  194 (198)
Q Consensus       143 Dl~~~~~~~~~~---~~~~~~~~~~~------------------~~~~~v~~~Sa~~~~gi~~l~~~i~~~~~  194 (198)
                      |+.+..-..++-   +.+++.+....                  -.....+-+||.+|+|+++++.++.+.+.
T Consensus       192 Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~vd  264 (366)
T KOG1532|consen  192 DVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESVD  264 (366)
T ss_pred             cccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHHH
Confidence            999876443332   33333333100                  01477899999999999999998877543

>PTZ00258 GTP-binding protein; Provisional

Probab=99.68  E-value=1e-15  Score=119.24  Aligned_cols=89  Identities=22%  Similarity=0.249  Sum_probs=67.1

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEe--------------------CCceEEEeCCCCc
Q 029158           19 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL--------------------GTKLCLVDLPGYG   78 (198)
Q Consensus        19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~--------------------~~~~~iiDtpG~~   78 (198)
                      ....+|+++|.||+|||||+|+|.+..  ..+.++++||.+......                    +.++.++||||+.
T Consensus        19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~--~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv   96 (390)
T PTZ00258         19 GNNLKMGIVGLPNVGKSTTFNALCKQQ--VPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLV   96 (390)
T ss_pred             CCCcEEEEECCCCCChHHHHHHHhcCc--ccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcC
Confidence            345689999999999999999998874  678899999976443221                    2359999999986


Q ss_pred             cccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCC
Q 029158           79 FAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKW  115 (198)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~  115 (198)
                      ......      ..+..+++.....+|++++|+|+..
T Consensus        97 ~ga~~g------~gLg~~fL~~Ir~aD~il~VVd~f~  127 (390)
T PTZ00258         97 KGASEG------EGLGNAFLSHIRAVDGIYHVVRAFE  127 (390)
T ss_pred             cCCcch------hHHHHHHHHHHHHCCEEEEEEeCCC
Confidence            543222      2344566777777999999999853

>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.68  E-value=3.2e-16  Score=103.10  Aligned_cols=158  Identities=16%  Similarity=0.146  Sum_probs=109.8

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeE-EEEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHHHH
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT-INFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV   98 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~   98 (198)
                      ...+++++|.-|+||||++-++--.+   .+...|..... .++.+.+.++.+||..|.+..          ..+++.|+
T Consensus        17 ~e~rililgldGaGkttIlyrlqvge---vvttkPtigfnve~v~yKNLk~~vwdLggqtSi----------rPyWRcYy   83 (182)
T KOG0072|consen   17 REMRILILGLDGAGKTTILYRLQVGE---VVTTKPTIGFNVETVPYKNLKFQVWDLGGQTSI----------RPYWRCYY   83 (182)
T ss_pred             cceEEEEeeccCCCeeEEEEEcccCc---ccccCCCCCcCccccccccccceeeEccCcccc----------cHHHHHHh
Confidence            66789999999999999987775542   12222222222 224446778999999996543          56677777


Q ss_pred             hcccccceEEEEEeCCCC--CCcCcHHHHHHHHhh---CCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEE
Q 029158           99 STRVSLKRVCLLIDTKWG--VKPRDHELISLMERS---QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMM  173 (198)
Q Consensus        99 ~~~~~~d~vi~v~d~~~~--~~~~~~~~~~~~~~~---~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  173 (198)
                      ..   .|.+|||+|+++.  ......+++..+++.   ...+++++||+|........+....+.-  .........+|.
T Consensus        84 ~d---t~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l--~~Lk~r~~~Iv~  158 (182)
T KOG0072|consen   84 AD---TDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTRSEVLKMLGL--QKLKDRIWQIVK  158 (182)
T ss_pred             cc---cceEEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhHHHHHHHhCh--HHHhhheeEEEe
Confidence            77   7999999999872  233334555555433   4678899999999876655554444331  122233488999


Q ss_pred             eccCCCCChHHHHHHHHHhhcc
Q 029158          174 VSSKSGAGIRSLRTVLSKIARF  195 (198)
Q Consensus       174 ~Sa~~~~gi~~l~~~i~~~~~~  195 (198)
                      .||.+|+|++...+|+++-++.
T Consensus       159 tSA~kg~Gld~~~DWL~~~l~~  180 (182)
T KOG0072|consen  159 TSAVKGEGLDPAMDWLQRPLKS  180 (182)
T ss_pred             eccccccCCcHHHHHHHHHHhc
Confidence            9999999999999999987764

>KOG0395 consensus Ras-related GTPase [General function prediction only]

Probab=99.68  E-value=8.2e-16  Score=110.09  Aligned_cols=155  Identities=14%  Similarity=0.062  Sum_probs=102.8

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeE-----EEEEEeCCceEEEeCCCCccccchhHHHHHHHHHH
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT-----INFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELV   94 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~-----~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~   94 (198)
                      ...+|+++|.+|+|||+|...+....   +...+.+|..+     ..+......+.|+||+|..+          +..+.
T Consensus         2 ~~~kvvvlG~~gVGKSal~~qf~~~~---f~~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~----------~~~~~   68 (196)
T KOG0395|consen    2 REYKVVVLGAGGVGKSALTIQFLTGR---FVEDYDPTIEDSYRKELTVDGEVCMLEILDTAGQEE----------FSAMR   68 (196)
T ss_pred             CceEEEEECCCCCCcchheeeecccc---cccccCCCccccceEEEEECCEEEEEEEEcCCCccc----------ChHHH
Confidence            35689999999999999999999884   34445444433     22333356788999999422          24444


Q ss_pred             HHHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHh----hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCC
Q 029158           95 KEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQ  169 (198)
Q Consensus        95 ~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~----~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  169 (198)
                      ..++..   .++.++|++..+..+-.+ ..+++.+.+    ...|+++|+||+|+........  +.-++. ..  ...+
T Consensus        69 ~~~~~~---~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~--eeg~~l-a~--~~~~  140 (196)
T KOG0395|consen   69 DLYIRN---GDGFLLVYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSE--EEGKAL-AR--SWGC  140 (196)
T ss_pred             HHhhcc---CcEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCH--HHHHHH-HH--hcCC
Confidence            555555   688888888876333222 223444422    2579999999999987432221  111111 11  2257


Q ss_pred             CcEEeccCCCCChHHHHHHHHHhhcc
Q 029158          170 PVMMVSSKSGAGIRSLRTVLSKIARF  195 (198)
Q Consensus       170 ~v~~~Sa~~~~gi~~l~~~i~~~~~~  195 (198)
                      +++++||+...+++++|..+....+.
T Consensus       141 ~f~E~Sak~~~~v~~~F~~L~r~~~~  166 (196)
T KOG0395|consen  141 AFIETSAKLNYNVDEVFYELVREIRL  166 (196)
T ss_pred             cEEEeeccCCcCHHHHHHHHHHHHHh
Confidence            89999999999999999999887654

>PLN00116 translation elongation factor EF-2 subunit; Provisional

Probab=99.67  E-value=1.5e-15  Score=129.98  Aligned_cols=115  Identities=17%  Similarity=0.278  Sum_probs=86.4

Q ss_pred             CCCCCeEEEEcCCCCCHHHHHHHHhcCccceee--------cC------CCCceeE---EEEEE----------------
Q 029158           18 APDLPEIAFAGRSNVGKSSMLNALTRQWGVVRT--------SD------KPGLTQT---INFFK----------------   64 (198)
Q Consensus        18 ~~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~--------~~------~~~~t~~---~~~~~----------------   64 (198)
                      +...++|+++|+.++|||||+++|+........        .+      ..+.|..   ..+..                
T Consensus        16 ~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~   95 (843)
T PLN00116         16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDG   95 (843)
T ss_pred             ccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCC
Confidence            456789999999999999999999865211000        01      1112222   11111                


Q ss_pred             eCCceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCC
Q 029158           65 LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDT  144 (198)
Q Consensus        65 ~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl  144 (198)
                      .+..+.++||||+             .++..+.......+|++++|+|+.+|+...+..+++.+...++|+++++||+|+
T Consensus        96 ~~~~inliDtPGh-------------~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~~~~~p~i~~iNK~D~  162 (843)
T PLN00116         96 NEYLINLIDSPGH-------------VDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDR  162 (843)
T ss_pred             CceEEEEECCCCH-------------HHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHHHHHCCCCEEEEEECCcc
Confidence            1456789999997             556666777777899999999999999999999999998889999999999999


Q ss_pred             C
Q 029158          145 V  145 (198)
Q Consensus       145 ~  145 (198)
                      .
T Consensus       163 ~  163 (843)
T PLN00116        163 C  163 (843)
T ss_pred             c
Confidence            8

>PRK12740 elongation factor G; Reviewed

Probab=99.67  E-value=8.8e-16  Score=129.10  Aligned_cols=108  Identities=22%  Similarity=0.260  Sum_probs=73.5

Q ss_pred             EcCCCCCHHHHHHHHhcCccc-eeec---------C------CCCceeEE---EEEEeCCceEEEeCCCCccccchhHHH
Q 029158           27 AGRSNVGKSSMLNALTRQWGV-VRTS---------D------KPGLTQTI---NFFKLGTKLCLVDLPGYGFAYAKEEVK   87 (198)
Q Consensus        27 vG~~~~GKSsli~~l~~~~~~-~~~~---------~------~~~~t~~~---~~~~~~~~~~iiDtpG~~~~~~~~~~~   87 (198)
                      +|++++|||||+++|+..... ...+         +      ..+.|...   .+...+..+.+|||||+.+        
T Consensus         1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~--------   72 (668)
T PRK12740          1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVD--------   72 (668)
T ss_pred             CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHH--------
Confidence            599999999999999654210 0000         0      12233322   2334477899999999732        


Q ss_pred             HHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCc
Q 029158           88 DAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFP  147 (198)
Q Consensus        88 ~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~  147 (198)
                           +..+.......+|++++++|++.+........+..+...+.|+++|+||+|+...
T Consensus        73 -----~~~~~~~~l~~aD~vllvvd~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D~~~~  127 (668)
T PRK12740         73 -----FTGEVERALRVLDGAVVVVCAVGGVEPQTETVWRQAEKYGVPRIIFVNKMDRAGA  127 (668)
T ss_pred             -----HHHHHHHHHHHhCeEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEEEEECCCCCCC
Confidence                 1222233334499999999999877766667777777778999999999998753

>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]

Probab=99.67  E-value=2.3e-15  Score=122.19  Aligned_cols=161  Identities=23%  Similarity=0.359  Sum_probs=115.7

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE--EEEe-------------------CCceEEEeCCCC
Q 029158           19 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FFKL-------------------GTKLCLVDLPGY   77 (198)
Q Consensus        19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~--~~~~-------------------~~~~~iiDtpG~   77 (198)
                      -+.|.++++|...+|||-|+..+.+..  ...+...++|+.+.  ++..                   -+.+.+|||||+
T Consensus       473 lRSPIcCilGHVDTGKTKlld~ir~tN--VqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpgh  550 (1064)
T KOG1144|consen  473 LRSPICCILGHVDTGKTKLLDKIRGTN--VQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGH  550 (1064)
T ss_pred             cCCceEEEeecccccchHHHHHhhccc--cccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCc
Confidence            357889999999999999999998863  33455566666542  3331                   146899999996


Q ss_pred             ccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCc----------
Q 029158           78 GFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFP----------  147 (198)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~----------  147 (198)
                                   +.+..---++...||++|+|+|..+|+.....+-+..++..++|+|+.+||+|..-.          
T Consensus       551 -------------EsFtnlRsrgsslC~~aIlvvdImhGlepqtiESi~lLR~rktpFivALNKiDRLYgwk~~p~~~i~  617 (1064)
T KOG1144|consen  551 -------------ESFTNLRSRGSSLCDLAILVVDIMHGLEPQTIESINLLRMRKTPFIVALNKIDRLYGWKSCPNAPIV  617 (1064)
T ss_pred             -------------hhhhhhhhccccccceEEEEeehhccCCcchhHHHHHHHhcCCCeEEeehhhhhhcccccCCCchHH
Confidence                         333333334445699999999999999999999999999999999999999997532          


Q ss_pred             -----------HHHHHHHHHHHHHHHhcc------------CCCCCcEEeccCCCCChHHHHHHHHHhhc
Q 029158          148 -----------IDVARRAMQIEESLKANN------------SLVQPVMMVSSKSGAGIRSLRTVLSKIAR  194 (198)
Q Consensus       148 -----------~~~~~~~~~~~~~~~~~~------------~~~~~v~~~Sa~~~~gi~~l~~~i~~~~~  194 (198)
                                 .+....++.+.-.++...            +..+.++|+||.+|+|+.+|+-+|.++.+
T Consensus       618 ~~lkkQ~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQ  687 (1064)
T KOG1144|consen  618 EALKKQKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQ  687 (1064)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHH
Confidence                       011122222222222111            11356899999999999999999988654

>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase)

Probab=99.66  E-value=9.8e-15  Score=109.97  Aligned_cols=124  Identities=21%  Similarity=0.209  Sum_probs=82.2

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEE---EEEEeCCceEEEeCCCCccccchhHHHHHHHHHHH
Q 029158           19 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---NFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVK   95 (198)
Q Consensus        19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~---~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~   95 (198)
                      ....+|+++|.+|+||||++|+|++. .+...+...+++...   .....+..+.+|||||+.+..   ...+.....+.
T Consensus        36 ~~~~rIllvGktGVGKSSliNsIlG~-~v~~vs~f~s~t~~~~~~~~~~~G~~l~VIDTPGL~d~~---~~~e~~~~~ik  111 (313)
T TIGR00991        36 VSSLTILVMGKGGVGKSSTVNSIIGE-RIATVSAFQSEGLRPMMVSRTRAGFTLNIIDTPGLIEGG---YINDQAVNIIK  111 (313)
T ss_pred             ccceEEEEECCCCCCHHHHHHHHhCC-CcccccCCCCcceeEEEEEEEECCeEEEEEECCCCCchH---HHHHHHHHHHH
Confidence            45779999999999999999999998 444444544433222   122246789999999987642   12222233344


Q ss_pred             HHHhcccccceEEEEEeCCC-CCCcCcHHHHHHHHhh-----CCcEEEEEeccCCCCc
Q 029158           96 EYVSTRVSLKRVCLLIDTKW-GVKPRDHELISLMERS-----QTKYQVVLTKTDTVFP  147 (198)
Q Consensus        96 ~~~~~~~~~d~vi~v~d~~~-~~~~~~~~~~~~~~~~-----~~p~iiv~nK~Dl~~~  147 (198)
                      .++.. ...|+++||.+... .+...+..+++.+...     ..++|+|+|++|...+
T Consensus       112 ~~l~~-~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~p  168 (313)
T TIGR00991       112 RFLLG-KTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSPP  168 (313)
T ss_pred             HHhhc-CCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCCC
Confidence            44332 35899999955432 3455666677666543     3689999999998744

>PTZ00416 elongation factor 2; Provisional

Probab=99.66  E-value=3.6e-15  Score=127.42  Aligned_cols=132  Identities=14%  Similarity=0.271  Sum_probs=92.8

Q ss_pred             CCCCCeEEEEcCCCCCHHHHHHHHhcCccce--------e------ecCCCCceeEE---EEEEe----------CCceE
Q 029158           18 APDLPEIAFAGRSNVGKSSMLNALTRQWGVV--------R------TSDKPGLTQTI---NFFKL----------GTKLC   70 (198)
Q Consensus        18 ~~~~~~v~~vG~~~~GKSsli~~l~~~~~~~--------~------~~~~~~~t~~~---~~~~~----------~~~~~   70 (198)
                      ....++|+++|+.++|||||+++|+......        .      .....++|...   .+...          +..+.
T Consensus        16 ~~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~   95 (836)
T PTZ00416         16 PDQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLIN   95 (836)
T ss_pred             ccCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEE
Confidence            3456799999999999999999998642110        0      00011222221   11111          34689


Q ss_pred             EEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCC----
Q 029158           71 LVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF----  146 (198)
Q Consensus        71 iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~----  146 (198)
                      ++||||+             .++..+.......+|++++|+|+..++...+..++..+...++|+++++||+|+.-    
T Consensus        96 liDtPG~-------------~~f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~~~~~~~~~p~iv~iNK~D~~~~~~~  162 (836)
T PTZ00416         96 LIDSPGH-------------VDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVLRQALQERIRPVLFINKVDRAILELQ  162 (836)
T ss_pred             EEcCCCH-------------HhHHHHHHHHHhcCCeEEEEEECCCCcCccHHHHHHHHHHcCCCEEEEEEChhhhhhhcC
Confidence            9999997             34455566666779999999999999999999999999888899999999999972    


Q ss_pred             --c----HHHHHHHHHHHHHHH
Q 029158          147 --P----IDVARRAMQIEESLK  162 (198)
Q Consensus       147 --~----~~~~~~~~~~~~~~~  162 (198)
                        +    .+.....+.+++.+.
T Consensus       163 ~~~~~~~~~~~~ii~~in~~l~  184 (836)
T PTZ00416        163 LDPEEIYQNFVKTIENVNVIIA  184 (836)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHH
Confidence              1    234455666665554

>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]

Probab=99.66  E-value=4.9e-16  Score=120.71  Aligned_cols=162  Identities=19%  Similarity=0.213  Sum_probs=113.0

Q ss_pred             CCCCCCeEEEEcCCCCCHHHHHHHHhcCc-------------cceeecCCCCceeEEE-----EEE---eCCceEEEeCC
Q 029158           17 PAPDLPEIAFAGRSNVGKSSMLNALTRQW-------------GVVRTSDKPGLTQTIN-----FFK---LGTKLCLVDLP   75 (198)
Q Consensus        17 ~~~~~~~v~~vG~~~~GKSsli~~l~~~~-------------~~~~~~~~~~~t~~~~-----~~~---~~~~~~iiDtp   75 (198)
                      +..+.++..++-.-..|||||..+|+...             ..-....+.+.|...+     +..   ..+.+.++|||
T Consensus         5 ~~~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTP   84 (603)
T COG0481           5 PQKNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTP   84 (603)
T ss_pred             chhhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCC
Confidence            44567788899999999999999998532             1112233455664432     222   13678999999


Q ss_pred             CCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHH
Q 029158           76 GYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAM  155 (198)
Q Consensus        76 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~  155 (198)
                      |+-+=          ...+...+   ..|.++++|+||++|...+...-.-...+.+.-+|.|+||+||+.++ .+....
T Consensus        85 GHVDF----------sYEVSRSL---AACEGalLvVDAsQGveAQTlAN~YlAle~~LeIiPViNKIDLP~Ad-pervk~  150 (603)
T COG0481          85 GHVDF----------SYEVSRSL---AACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPAAD-PERVKQ  150 (603)
T ss_pred             Cccce----------EEEehhhH---hhCCCcEEEEECccchHHHHHHHHHHHHHcCcEEEEeeecccCCCCC-HHHHHH
Confidence            97431          11111222   23899999999999988888765555555689999999999999764 345555


Q ss_pred             HHHHHHHhccCCCCCcEEeccCCCCChHHHHHHHHHhhcc
Q 029158          156 QIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIARF  195 (198)
Q Consensus       156 ~~~~~~~~~~~~~~~v~~~Sa~~~~gi~~l~~~i~~~~~~  195 (198)
                      ++++.+.   ......+.+|||+|.|++++++.|.+.++.
T Consensus       151 eIe~~iG---id~~dav~~SAKtG~gI~~iLe~Iv~~iP~  187 (603)
T COG0481         151 EIEDIIG---IDASDAVLVSAKTGIGIEDVLEAIVEKIPP  187 (603)
T ss_pred             HHHHHhC---CCcchheeEecccCCCHHHHHHHHHhhCCC
Confidence            5555442   223568999999999999999999988764

>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]

Probab=99.65  E-value=7.8e-16  Score=110.81  Aligned_cols=162  Identities=19%  Similarity=0.231  Sum_probs=116.0

Q ss_pred             CCCCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEE---EEEEeCCceEEEeCCCCccccchhHHHHHHHHH
Q 029158           17 PAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---NFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEEL   93 (198)
Q Consensus        17 ~~~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~---~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~   93 (198)
                      .+++-.+|+++|.|++|||||+..+....  .+...+..||...   ...+.+.+++++|.||+.+...+..      ..
T Consensus        58 ~KsGdaRValIGfPSVGKStlLs~iT~T~--SeaA~yeFTTLtcIpGvi~y~ga~IQllDLPGIieGAsqgk------GR  129 (364)
T KOG1486|consen   58 LKSGDARVALIGFPSVGKSTLLSKITSTH--SEAASYEFTTLTCIPGVIHYNGANIQLLDLPGIIEGASQGK------GR  129 (364)
T ss_pred             eccCCeEEEEecCCCccHHHHHHHhhcch--hhhhceeeeEEEeecceEEecCceEEEecCcccccccccCC------CC
Confidence            35567799999999999999999999874  5667777777553   3555688999999999877654432      22


Q ss_pred             HHHHHhcccccceEEEEEeCCCCCCcCc------------------------------------------H---------
Q 029158           94 VKEYVSTRVSLKRVCLLIDTKWGVKPRD------------------------------------------H---------  122 (198)
Q Consensus        94 ~~~~~~~~~~~d~vi~v~d~~~~~~~~~------------------------------------------~---------  122 (198)
                      -++.+...+.+|+|++++|++.+.....                                          .         
T Consensus       130 GRQviavArtaDlilMvLDatk~e~qr~~le~ELe~vGiRLNk~~Pniy~k~kk~gGi~f~~T~~lT~~~ek~i~~ILhe  209 (364)
T KOG1486|consen  130 GRQVIAVARTADLILMVLDATKSEDQREILEKELEAVGIRLNKRKPNIYFKKKKTGGISFNTTVPLTHCDEKLIYTILHE  209 (364)
T ss_pred             CceEEEEeecccEEEEEecCCcchhHHHHHHHHHHHhceeccCCCCCeEEEeeccCCeEEeeeeccccccHHHHHHHHHH
Confidence            4466677778999999999976211110                                          0         


Q ss_pred             -----------------HHHHHHHhh--CCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEeccCCCCChH
Q 029158          123 -----------------ELISLMERS--QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIR  183 (198)
Q Consensus       123 -----------------~~~~~~~~~--~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~~~gi~  183 (198)
                                       ++++.+...  -++++.|-||+|.++-++.+.    +.+        ...-+-+||.-..|++
T Consensus       210 ykI~Naevl~ReD~t~DdfIDvi~gnr~Y~~ClYvYnKID~vs~eevdr----lAr--------~PnsvViSC~m~lnld  277 (364)
T KOG1486|consen  210 YKIHNAEVLFREDCTVDDFIDVIEGNRVYIKCLYVYNKIDQVSIEEVDR----LAR--------QPNSVVISCNMKLNLD  277 (364)
T ss_pred             HeeccceEEEecCCChHHHHHHHhccceEEEEEEEeeccceecHHHHHH----Hhc--------CCCcEEEEeccccCHH
Confidence                             122222211  137899999999988665532    211        2456778999999999


Q ss_pred             HHHHHHHHhhccccC
Q 029158          184 SLRTVLSKIARFAKV  198 (198)
Q Consensus       184 ~l~~~i~~~~~~~r~  198 (198)
                      .+.+.|.+.+...||
T Consensus       278 ~lle~iWe~l~L~rv  292 (364)
T KOG1486|consen  278 RLLERIWEELNLVRV  292 (364)
T ss_pred             HHHHHHHHHhceEEE
Confidence            999999999988775

>PLN00023 GTP-binding protein; Provisional

Probab=99.65  E-value=4.7e-15  Score=112.38  Aligned_cols=120  Identities=19%  Similarity=0.225  Sum_probs=76.9

Q ss_pred             CCCCCCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeE---EEEEE-------------eCCceEEEeCCCCc
Q 029158           15 SFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT---INFFK-------------LGTKLCLVDLPGYG   78 (198)
Q Consensus        15 ~~~~~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~---~~~~~-------------~~~~~~iiDtpG~~   78 (198)
                      ..++....+|+++|..|+|||||++++.+........+..+.+..   +.+..             ....+.||||+|. 
T Consensus        15 ~~~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGq-   93 (334)
T PLN00023         15 GGPPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGH-   93 (334)
T ss_pred             cCCCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCC-
Confidence            356777889999999999999999999987422211222222211   11110             1235899999995 


Q ss_pred             cccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHhh---------------CCcEEEEEecc
Q 029158           79 FAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS---------------QTKYQVVLTKT  142 (198)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~~---------------~~p~iiv~nK~  142 (198)
                               +.+..+...|+..   +|++++|+|.++...... ..|++.+...               ++|+++|+||+
T Consensus        94 ---------ErfrsL~~~yyr~---AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~  161 (334)
T PLN00023         94 ---------ERYKDCRSLFYSQ---INGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKA  161 (334)
T ss_pred             ---------hhhhhhhHHhccC---CCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECc
Confidence                     2234444555554   899999999986322222 2355555432               37899999999


Q ss_pred             CCCCc
Q 029158          143 DTVFP  147 (198)
Q Consensus       143 Dl~~~  147 (198)
                      |+...
T Consensus       162 DL~~~  166 (334)
T PLN00023        162 DIAPK  166 (334)
T ss_pred             ccccc
Confidence            99754

>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]

Probab=99.64  E-value=4.5e-15  Score=99.84  Aligned_cols=149  Identities=21%  Similarity=0.233  Sum_probs=98.6

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEE--------eCCceEEEeCCCCccccchhHHHHHHHHH
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK--------LGTKLCLVDLPGYGFAYAKEEVKDAWEEL   93 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~--------~~~~~~iiDtpG~~~~~~~~~~~~~~~~~   93 (198)
                      .++.++|.+-+|||+|+..+... +.+...   -+|..+.++.        ....+++|||+|          ++.+..+
T Consensus         9 frlivigdstvgkssll~~ft~g-kfaels---dptvgvdffarlie~~pg~riklqlwdtag----------qerfrsi   74 (213)
T KOG0091|consen    9 FRLIVIGDSTVGKSSLLRYFTEG-KFAELS---DPTVGVDFFARLIELRPGYRIKLQLWDTAG----------QERFRSI   74 (213)
T ss_pred             EEEEEEcCCcccHHHHHHHHhcC-cccccC---CCccchHHHHHHHhcCCCcEEEEEEeeccc----------hHHHHHH
Confidence            57899999999999999999988 344333   2333333221        135789999999          4667778


Q ss_pred             HHHHHhcccccceEEEEEeCCCCCCcC-cHHHHHHHHhh-----CCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCC
Q 029158           94 VKEYVSTRVSLKRVCLLIDTKWGVKPR-DHELISLMERS-----QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSL  167 (198)
Q Consensus        94 ~~~~~~~~~~~d~vi~v~d~~~~~~~~-~~~~~~~~~~~-----~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~  167 (198)
                      ...|+++   .-++++|+|.+..-+-. -..|++....+     ++-..+|++|+|+.....+..  ++.+.....   .
T Consensus        75 tksyyrn---svgvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~--EEaEklAa~---h  146 (213)
T KOG0091|consen   75 TKSYYRN---SVGVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTA--EEAEKLAAS---H  146 (213)
T ss_pred             HHHHhhc---ccceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccH--HHHHHHHHh---c
Confidence            8888887   66899999997622211 12233333322     233467999999986543321  222222221   2


Q ss_pred             CCCcEEeccCCCCChHHHHHHHHHh
Q 029158          168 VQPVMMVSSKSGAGIRSLRTVLSKI  192 (198)
Q Consensus       168 ~~~v~~~Sa~~~~gi~~l~~~i~~~  192 (198)
                      +..++++||++|.|+++.++-+.+.
T Consensus       147 gM~FVETSak~g~NVeEAF~mlaqe  171 (213)
T KOG0091|consen  147 GMAFVETSAKNGCNVEEAFDMLAQE  171 (213)
T ss_pred             CceEEEecccCCCcHHHHHHHHHHH
Confidence            5789999999999999999877654

>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]

Probab=99.64  E-value=1.4e-14  Score=109.70  Aligned_cols=173  Identities=23%  Similarity=0.315  Sum_probs=114.0

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCccceeec---CCCC----ceeEEEEEE-------eCCceEEEeCCCCccccchh
Q 029158           19 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTS---DKPG----LTQTINFFK-------LGTKLCLVDLPGYGFAYAKE   84 (198)
Q Consensus        19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~---~~~~----~t~~~~~~~-------~~~~~~iiDtpG~~~~~~~~   84 (198)
                      ....+|+++|++|.|||||+|.|++.. +....   +..+    .+..+....       ...+++++||||+|+.....
T Consensus        21 Gi~f~im~~G~sG~GKttfiNtL~~~~-l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs   99 (373)
T COG5019          21 GIDFTIMVVGESGLGKTTFINTLFGTS-LVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNS   99 (373)
T ss_pred             CCceEEEEecCCCCchhHHHHhhhHhh-ccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCcccccccc
Confidence            345789999999999999999999872 22111   1111    222222111       13578999999999864322


Q ss_pred             ----HHHHHHHHHHHHHHhcc-----------cccceEEEEEe-CCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcH
Q 029158           85 ----EVKDAWEELVKEYVSTR-----------VSLKRVCLLID-TKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPI  148 (198)
Q Consensus        85 ----~~~~~~~~~~~~~~~~~-----------~~~d~vi~v~d-~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~  148 (198)
                          .+-..++...++|+...           ...++++|.+. .++++...+.+.++.+.. .+.+|.|+.|+|..+..
T Consensus       100 ~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe~Mk~ls~-~vNlIPVI~KaD~lT~~  178 (373)
T COG5019         100 KCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIEAMKRLSK-RVNLIPVIAKADTLTDD  178 (373)
T ss_pred             ccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHHHHHHHHhc-ccCeeeeeeccccCCHH
Confidence                23344444444555321           12567888875 466889999999998886 69999999999999999


Q ss_pred             HHHHHHHHHHHHHHhccCCCCCcE-EeccCCC-CChHHHHHHHHHhhccc
Q 029158          149 DVARRAMQIEESLKANNSLVQPVM-MVSSKSG-AGIRSLRTVLSKIARFA  196 (198)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~v~-~~Sa~~~-~gi~~l~~~i~~~~~~~  196 (198)
                      ++...++.+.+.+....   +++| |.+.-.. ...-+.-+.+....+|+
T Consensus       179 El~~~K~~I~~~i~~~n---I~vf~pyd~e~~~~e~~e~~~~l~~~~PFA  225 (373)
T COG5019         179 ELAEFKERIREDLEQYN---IPVFDPYDPEDDEDESLEENQDLRSLIPFA  225 (373)
T ss_pred             HHHHHHHHHHHHHHHhC---CceeCCCCccccchhhHHHHHHHhhcCCeE
Confidence            99999999999888663   6666 4333222 13334444555555554

>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]

Probab=99.64  E-value=6.7e-16  Score=101.35  Aligned_cols=161  Identities=17%  Similarity=0.208  Sum_probs=107.7

Q ss_pred             CCCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHHH
Q 029158           18 APDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY   97 (198)
Q Consensus        18 ~~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~   97 (198)
                      ..+..+++++|-.++|||||+..|.+.+ .....+..+.......+.....+.+||..|.      ..++..|.    .|
T Consensus        14 t~rEirilllGldnAGKTT~LKqL~sED-~~hltpT~GFn~k~v~~~g~f~LnvwDiGGq------r~IRpyWs----NY   82 (185)
T KOG0074|consen   14 TRREIRILLLGLDNAGKTTFLKQLKSED-PRHLTPTNGFNTKKVEYDGTFHLNVWDIGGQ------RGIRPYWS----NY   82 (185)
T ss_pred             CcceEEEEEEecCCCcchhHHHHHccCC-hhhccccCCcceEEEeecCcEEEEEEecCCc------cccchhhh----hh
Confidence            3567899999999999999999999873 4444444333333333344578999999994      23344444    44


Q ss_pred             HhcccccceEEEEEeCCCC--CCcCcHHHHHHHHh---hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcE
Q 029158           98 VSTRVSLKRVCLLIDTKWG--VKPRDHELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVM  172 (198)
Q Consensus        98 ~~~~~~~d~vi~v~d~~~~--~~~~~~~~~~~~~~---~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~  172 (198)
                      +..   .|.++||+|+.+.  +.+...++.+.+++   ..+|+.+-.||.|+......++....+.  +........++-
T Consensus        83 yen---vd~lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~~eeia~kln--l~~lrdRswhIq  157 (185)
T KOG0074|consen   83 YEN---VDGLIYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAKVEEIALKLN--LAGLRDRSWHIQ  157 (185)
T ss_pred             hhc---cceEEEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcchHHHHHhcc--hhhhhhceEEee
Confidence            444   8999999997652  12222333344433   3689999999999987655544332222  222233357889


Q ss_pred             EeccCCCCChHHHHHHHHHhhc
Q 029158          173 MVSSKSGAGIRSLRTVLSKIAR  194 (198)
Q Consensus       173 ~~Sa~~~~gi~~l~~~i~~~~~  194 (198)
                      .+||.+++|+.+-.+|++....
T Consensus       158 ~csals~eg~~dg~~wv~sn~~  179 (185)
T KOG0074|consen  158 ECSALSLEGSTDGSDWVQSNPE  179 (185)
T ss_pred             eCccccccCccCcchhhhcCCC
Confidence            9999999999999999887654

>PRK07560 elongation factor EF-2; Reviewed

Probab=99.64  E-value=5.2e-15  Score=125.14  Aligned_cols=114  Identities=18%  Similarity=0.249  Sum_probs=80.0

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCcccee--------ecC------CCCceeEE-----EE--EEeCCceEEEeCCCC
Q 029158           19 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVR--------TSD------KPGLTQTI-----NF--FKLGTKLCLVDLPGY   77 (198)
Q Consensus        19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~--------~~~------~~~~t~~~-----~~--~~~~~~~~iiDtpG~   77 (198)
                      ...++|+++|+.++|||||+.+|+.......        ..+      ..+.|...     .+  ...+..+.++||||+
T Consensus        18 ~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~   97 (731)
T PRK07560         18 EQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGH   97 (731)
T ss_pred             hcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCc
Confidence            4677899999999999999999986421100        000      11122221     11  112567899999997


Q ss_pred             ccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCC
Q 029158           78 GFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV  145 (198)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~  145 (198)
                      .+             +..+.......+|++++|+|+..++...+..++..+...+.|.|+++||+|+.
T Consensus        98 ~d-------------f~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~~~~~~~~~iv~iNK~D~~  152 (731)
T PRK07560         98 VD-------------FGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQALRERVKPVLFINKVDRL  152 (731)
T ss_pred             cC-------------hHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHHHHHcCCCeEEEEECchhh
Confidence            33             22344444455999999999999988888888888777788999999999986

>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]

Probab=99.63  E-value=9.7e-16  Score=102.48  Aligned_cols=155  Identities=18%  Similarity=0.125  Sum_probs=100.4

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCccceeecC---CCCceeEEEEEEeCCceEEEeCCCCccccchhHHHHHHHHHHH
Q 029158           19 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSD---KPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVK   95 (198)
Q Consensus        19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~---~~~~t~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~   95 (198)
                      .-..+++++|..=+|||||+-+++..++-...-.   ....++...+.....++.||||+|.          +.+..+-.
T Consensus        11 s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQ----------ErfHALGP   80 (218)
T KOG0088|consen   11 SFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQ----------ERFHALGP   80 (218)
T ss_pred             ceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccch----------HhhhccCc
Confidence            4467899999999999999999987641111110   1112333445556678999999994          55566666


Q ss_pred             HHHhcccccceEEEEEeCCCCCCcC-cHHHHHHHHh---hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCc
Q 029158           96 EYVSTRVSLKRVCLLIDTKWGVKPR-DHELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPV  171 (198)
Q Consensus        96 ~~~~~~~~~d~vi~v~d~~~~~~~~-~~~~~~~~~~---~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v  171 (198)
                      -|++.   .+++++|+|..+.-+-. -+.|...++.   ..+-+++|.||+|+.....+..     ++..+....-+..+
T Consensus        81 IYYRg---SnGalLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEeeR~Vt~-----qeAe~YAesvGA~y  152 (218)
T KOG0088|consen   81 IYYRG---SNGALLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEERQVTR-----QEAEAYAESVGALY  152 (218)
T ss_pred             eEEeC---CCceEEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHhhhhhH-----HHHHHHHHhhchhh
Confidence            67766   78999999997621111 1223333332   2477899999999975443221     11111111225779


Q ss_pred             EEeccCCCCChHHHHHHHHH
Q 029158          172 MMVSSKSGAGIRSLRTVLSK  191 (198)
Q Consensus       172 ~~~Sa~~~~gi~~l~~~i~~  191 (198)
                      +++||+.+.|+.++|+.+..
T Consensus       153 ~eTSAk~N~Gi~elFe~Lt~  172 (218)
T KOG0088|consen  153 METSAKDNVGISELFESLTA  172 (218)
T ss_pred             eecccccccCHHHHHHHHHH
Confidence            99999999999999987654

>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another

Probab=99.61  E-value=3.6e-15  Score=104.78  Aligned_cols=67  Identities=24%  Similarity=0.460  Sum_probs=46.8

Q ss_pred             CceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHH-HHHhhCCcEEEEEecc
Q 029158           67 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELIS-LMERSQTKYQVVLTKT  142 (198)
Q Consensus        67 ~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~-~~~~~~~p~iiv~nK~  142 (198)
                      .++.|+||||+.+....+      ..+..+|+   ..+|+++||+++.+.+...+.+.+. ........+++|+||+
T Consensus       101 ~~~~lvDtPG~~~~~~~~------~~~~~~~~---~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~~~~~i~V~nk~  168 (168)
T PF00350_consen  101 RNLTLVDTPGLNSTNSEH------TEITEEYL---PKADVVIFVVDANQDLTESDMEFLKQMLDPDKSRTIFVLNKA  168 (168)
T ss_dssp             CSEEEEEEEEBHSSHTTT------SHHHHHHH---STTEEEEEEEETTSTGGGHHHHHHHHHHTTTCSSEEEEEE-G
T ss_pred             cceEEEeCCccccchhhh------HHHHHHhh---ccCCEEEEEeccCcccchHHHHHHHHHhcCCCCeEEEEEcCC
Confidence            379999999997643222      24455555   3489999999999877766666554 4444566799999985

Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....

>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.61  E-value=2.1e-15  Score=101.00  Aligned_cols=148  Identities=18%  Similarity=0.175  Sum_probs=95.2

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEE-------e---------CCceEEEeCCCCccccchhH
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK-------L---------GTKLCLVDLPGYGFAYAKEE   85 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~-------~---------~~~~~iiDtpG~~~~~~~~~   85 (198)
                      .+.+.+|.+|+||||++-.+....    .+...-+|..+.+..       .         ...+++|||+|         
T Consensus        10 ikfLaLGDSGVGKTs~Ly~YTD~~----F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAG---------   76 (219)
T KOG0081|consen   10 IKFLALGDSGVGKTSFLYQYTDGK----FNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAG---------   76 (219)
T ss_pred             HHHHhhccCCCCceEEEEEecCCc----ccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeecccc---------
Confidence            356778999999999998887663    111112232222111       1         24689999999         


Q ss_pred             HHHHHHHHHHHHHhcccccceEEEEEeCCCCCC-cCcHHHHHHHHhh----CCcEEEEEeccCCCCcHHHHHH-HHHHHH
Q 029158           86 VKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVK-PRDHELISLMERS----QTKYQVVLTKTDTVFPIDVARR-AMQIEE  159 (198)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~-~~~~~~~~~~~~~----~~p~iiv~nK~Dl~~~~~~~~~-~~~~~~  159 (198)
                       ++.+..+.-.|++.   +=+.++++|..+.-+ -+...|+.+++.+    +--++++.||+|+.+...+.+. ...+.+
T Consensus        77 -QERFRSLTTAFfRD---AMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~  152 (219)
T KOG0081|consen   77 -QERFRSLTTAFFRD---AMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALAD  152 (219)
T ss_pred             -HHHHHHHHHHHHHh---hccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHH
Confidence             35556666666666   567788899875211 1224566666643    3447899999999876544321 112222


Q ss_pred             HHHhccCCCCCcEEeccCCCCChHHHHHHHHHh
Q 029158          160 SLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKI  192 (198)
Q Consensus       160 ~~~~~~~~~~~v~~~Sa~~~~gi~~l~~~i~~~  192 (198)
                            ..+.|+|++||.+|.|+++..+.+...
T Consensus       153 ------kyglPYfETSA~tg~Nv~kave~Lldl  179 (219)
T KOG0081|consen  153 ------KYGLPYFETSACTGTNVEKAVELLLDL  179 (219)
T ss_pred             ------HhCCCeeeeccccCcCHHHHHHHHHHH
Confidence                  226999999999999999988776543

>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]

Probab=99.61  E-value=3.6e-14  Score=112.79  Aligned_cols=156  Identities=17%  Similarity=0.251  Sum_probs=110.6

Q ss_pred             CCCCCCeEEEEcCCCCCHHHHHHHHhcCc---------------------cc--------eeecCCCCceeEEE---EEE
Q 029158           17 PAPDLPEIAFAGRSNVGKSSMLNALTRQW---------------------GV--------VRTSDKPGLTQTIN---FFK   64 (198)
Q Consensus        17 ~~~~~~~v~~vG~~~~GKSsli~~l~~~~---------------------~~--------~~~~~~~~~t~~~~---~~~   64 (198)
                      ++......+++|...+|||||+.+|+..-                     ..        +......+.|.++.   +..
T Consensus       173 ~~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes  252 (603)
T KOG0458|consen  173 DPKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFES  252 (603)
T ss_pred             CCccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEec
Confidence            34456789999999999999999988421                     00        11122334444432   333


Q ss_pred             eCCceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC-------cCcHHHHHHHHhhC-CcEE
Q 029158           65 LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVK-------PRDHELISLMERSQ-TKYQ  136 (198)
Q Consensus        65 ~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~-------~~~~~~~~~~~~~~-~p~i  136 (198)
                      ....++++|+||+             .+++..++.+...+|+.++|+|++.+..       ....++...++..+ ..+|
T Consensus       253 ~~~~~tliDaPGh-------------kdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lgi~qli  319 (603)
T KOG0458|consen  253 KSKIVTLIDAPGH-------------KDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLGISQLI  319 (603)
T ss_pred             CceeEEEecCCCc-------------cccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcCcceEE
Confidence            3578999999997             6778889999999999999999987422       33466777777766 4578


Q ss_pred             EEEeccCCCCcH--HHHHHHHHHHHHH-Hhcc--CCCCCcEEeccCCCCChHHH
Q 029158          137 VVLTKTDTVFPI--DVARRAMQIEESL-KANN--SLVQPVMMVSSKSGAGIRSL  185 (198)
Q Consensus       137 iv~nK~Dl~~~~--~~~~~~~~~~~~~-~~~~--~~~~~v~~~Sa~~~~gi~~l  185 (198)
                      +++||+|+++..  ..+++...+...+ ....  ...+.++|+|+..|+|+-..
T Consensus       320 vaiNKmD~V~Wsq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~  373 (603)
T KOG0458|consen  320 VAINKMDLVSWSQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKI  373 (603)
T ss_pred             EEeecccccCccHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCccccc
Confidence            999999999764  4456666666666 2222  23468999999999998654

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=99.60  E-value=2.7e-15  Score=99.40  Aligned_cols=108  Identities=18%  Similarity=0.141  Sum_probs=61.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCccc--eeecCCCCceeEEEEEEe---CCceEEEeCCCCccccchhHHHHHHHHHHHHH
Q 029158           23 EIAFAGRSNVGKSSMLNALTRQWGV--VRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY   97 (198)
Q Consensus        23 ~v~~vG~~~~GKSsli~~l~~~~~~--~~~~~~~~~t~~~~~~~~---~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~   97 (198)
                      ||+++|.+|+|||||+++|++....  .......+.+........   ...+.+||++|....          ......+
T Consensus         1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~----------~~~~~~~   70 (119)
T PF08477_consen    1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEF----------YSQHQFF   70 (119)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCH----------HCTSHHH
T ss_pred             CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCcccee----------cccccch
Confidence            6899999999999999999987422  011222222222221111   234899999996321          1111111


Q ss_pred             HhcccccceEEEEEeCCCCCCcCc-HHH---HHHHHh--hCCcEEEEEeccC
Q 029158           98 VSTRVSLKRVCLLIDTKWGVKPRD-HEL---ISLMER--SQTKYQVVLTKTD  143 (198)
Q Consensus        98 ~~~~~~~d~vi~v~d~~~~~~~~~-~~~---~~~~~~--~~~p~iiv~nK~D  143 (198)
                         ...+|++++|+|.++..+-.. .++   +..+..  .+.|+++|+||.|
T Consensus        71 ---~~~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D  119 (119)
T PF08477_consen   71 ---LKKADAVILVYDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD  119 (119)
T ss_dssp             ---HHHSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred             ---hhcCcEEEEEEcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence               223899999999986321111 122   233332  2599999999998

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]

Probab=99.60  E-value=5.9e-14  Score=100.52  Aligned_cols=171  Identities=20%  Similarity=0.291  Sum_probs=108.8

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCccceeec-------CCCCceeEE------EEEEeCCceEEEeCCCCccccchhH--
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTS-------DKPGLTQTI------NFFKLGTKLCLVDLPGYGFAYAKEE--   85 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~-------~~~~~t~~~------~~~~~~~~~~iiDtpG~~~~~~~~~--   85 (198)
                      ..+|++||.+|.|||||+|.|+... +...+       +++.|+.-.      .......+++++||||+|+.+..+.  
T Consensus        46 ~FNIMVVgqSglgkstlinTlf~s~-v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~ncW  124 (336)
T KOG1547|consen   46 DFNIMVVGQSGLGKSTLINTLFKSH-VSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNCW  124 (336)
T ss_pred             ceEEEEEecCCCCchhhHHHHHHHH-HhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccchh
Confidence            4689999999999999999998752 22111       122222211      1111245789999999999765443  


Q ss_pred             ------HHHHHHHHHHHHHhcc-------cccceEEEEEeC-CCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHH
Q 029158           86 ------VKDAWEELVKEYVSTR-------VSLKRVCLLIDT-KWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVA  151 (198)
Q Consensus        86 ------~~~~~~~~~~~~~~~~-------~~~d~vi~v~d~-~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~  151 (198)
                            +.+.++.++++-+...       ...+.++|.+.+ .+.+...|.++++.+.+ -+.++-|+-|+|..+-++..
T Consensus       125 ePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrplDieflkrLt~-vvNvvPVIakaDtlTleEr~  203 (336)
T KOG1547|consen  125 EPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRPLDIEFLKRLTE-VVNVVPVIAKADTLTLEERS  203 (336)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCccCcccHHHHHHHhh-hheeeeeEeecccccHHHHH
Confidence                  2333333333222110       114556776655 55788899999998876 47899999999999999988


Q ss_pred             HHHHHHHHHHHhccCCCCCcEEeccCCCC-ChHHHHHHHHHhhccc
Q 029158          152 RRAMQIEESLKANNSLVQPVMMVSSKSGA-GIRSLRTVLSKIARFA  196 (198)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~v~~~Sa~~~~-gi~~l~~~i~~~~~~~  196 (198)
                      +..+.+++.+....   ..+.+-.+.+.. .=..+-+.+.+..+++
T Consensus       204 ~FkqrI~~el~~~~---i~vYPq~~fded~ed~~lN~kvR~~iPFA  246 (336)
T KOG1547|consen  204 AFKQRIRKELEKHG---IDVYPQDSFDEDLEDKTLNDKVRESIPFA  246 (336)
T ss_pred             HHHHHHHHHHHhcC---cccccccccccchhHHHHHHHHHhhCCeE
Confidence            99999998888653   455554444321 1123444555555554

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=99.60  E-value=1e-14  Score=105.86  Aligned_cols=58  Identities=17%  Similarity=0.256  Sum_probs=42.5

Q ss_pred             hCCcEEEEEeccCCCCcH--HHHHHHHHHHHHHHhccCCCCCcEEeccCCCCChHHHHHHHHHhh
Q 029158          131 SQTKYQVVLTKTDTVFPI--DVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA  193 (198)
Q Consensus       131 ~~~p~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~~~gi~~l~~~i~~~~  193 (198)
                      .+.|.++++||+|+....  ...+..+.+++.     ....+++++||++++|++++++++.++.
T Consensus       147 ~~~a~iiv~NK~Dl~~~~~~~~~~~~~~l~~~-----~~~~~i~~~Sa~~g~gv~~l~~~i~~~~  206 (207)
T TIGR00073       147 FKEADLIVINKADLAEAVGFDVEKMKADAKKI-----NPEAEIILMSLKTGEGLDEWLEFLEGQV  206 (207)
T ss_pred             HhhCCEEEEEHHHccccchhhHHHHHHHHHHh-----CCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence            357889999999998642  233333333322     2358899999999999999999998764

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1

Probab=99.60  E-value=1.6e-14  Score=105.43  Aligned_cols=159  Identities=14%  Similarity=0.116  Sum_probs=88.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEe----CCceEEEeCCCCccccchhHHHHHHHHHHHHHH
Q 029158           23 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL----GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV   98 (198)
Q Consensus        23 ~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~----~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~   98 (198)
                      ||+++|+.||||||..+.++++. .+....+.+.|.+++....    ...+.+||+||...-....     +.......+
T Consensus         1 KiLLmG~~~SGKTSi~~vIF~~~-~p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~-----~~~~~~~if   74 (232)
T PF04670_consen    1 KILLMGPRRSGKTSIRSVIFHKY-SPRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENY-----FNSQREEIF   74 (232)
T ss_dssp             EEEEEESTTSSHHHHHHHHHS----GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTT-----HTCCHHHHH
T ss_pred             CEEEEcCCCCChhhHHHHHHcCC-CchhccccCCcCCceEEEEecCCCcEEEEEEcCCcccccccc-----ccccHHHHH
Confidence            68999999999999999999873 3333444455655553333    4589999999975422110     000111223


Q ss_pred             hcccccceEEEEEeCCCCCCcCcHH----HHHHHHhh--CCcEEEEEeccCCCCcHHHHHHHHHHH----HHHHhccCCC
Q 029158           99 STRVSLKRVCLLIDTKWGVKPRDHE----LISLMERS--QTKYQVVLTKTDTVFPIDVARRAMQIE----ESLKANNSLV  168 (198)
Q Consensus        99 ~~~~~~d~vi~v~d~~~~~~~~~~~----~~~~~~~~--~~p~iiv~nK~Dl~~~~~~~~~~~~~~----~~~~~~~~~~  168 (198)
                      +.   +++++||+|+.+.....+..    .+..+.+.  +..+-+.++|+|+..++...+....++    +.+.......
T Consensus        75 ~~---v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~  151 (232)
T PF04670_consen   75 SN---VGVLIYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIED  151 (232)
T ss_dssp             CT---ESEEEEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TS
T ss_pred             hc---cCEEEEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccc
Confidence            33   88999999998532333322    22333332  578999999999998776655544444    3443332223


Q ss_pred             CCcEEeccCCCCChHHHHHHHHH
Q 029158          169 QPVMMVSSKSGAGIRSLRTVLSK  191 (198)
Q Consensus       169 ~~v~~~Sa~~~~gi~~l~~~i~~  191 (198)
                      ..++.+|..+ +.+-+.+..|..
T Consensus       152 ~~~~~TSI~D-~Sly~A~S~Ivq  173 (232)
T PF04670_consen  152 ITFFLTSIWD-ESLYEAWSKIVQ  173 (232)
T ss_dssp             EEEEEE-TTS-THHHHHHHHHHH
T ss_pred             eEEEeccCcC-cHHHHHHHHHHH
Confidence            6678888777 555555555544

RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.

>PRK09601 GTP-binding protein YchF; Reviewed

Probab=99.60  E-value=4.5e-14  Score=109.00  Aligned_cols=86  Identities=22%  Similarity=0.283  Sum_probs=66.1

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEE--EEe-C-----------------CceEEEeCCCCcccc
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF--FKL-G-----------------TKLCLVDLPGYGFAY   81 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~--~~~-~-----------------~~~~iiDtpG~~~~~   81 (198)
                      .+|+++|.||+|||||+|+|++..  ..+.++++||.+...  ... +                 .++.++|+||+....
T Consensus         3 ~~vgIVG~PNvGKSTLfnaLt~~~--~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a   80 (364)
T PRK09601          3 LKCGIVGLPNVGKSTLFNALTKAG--AEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGA   80 (364)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCC--CeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCC
Confidence            689999999999999999999984  678999999976432  111 1                 259999999986543


Q ss_pred             chhHHHHHHHHHHHHHHhcccccceEEEEEeCCC
Q 029158           82 AKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKW  115 (198)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~  115 (198)
                      ...      ..+..+++.....+|++++|+|+..
T Consensus        81 ~~g------~glg~~fL~~i~~aD~li~VVd~f~  108 (364)
T PRK09601         81 SKG------EGLGNQFLANIREVDAIVHVVRCFE  108 (364)
T ss_pred             ChH------HHHHHHHHHHHHhCCEEEEEEeCCc
Confidence            222      3345677777778999999999864

>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]

Probab=99.60  E-value=1.1e-15  Score=99.50  Aligned_cols=147  Identities=18%  Similarity=0.174  Sum_probs=100.6

Q ss_pred             EEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEE-------EeCCceEEEeCCCCccccchhHHHHHHHHHHHHHH
Q 029158           26 FAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF-------KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV   98 (198)
Q Consensus        26 ~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~-------~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~   98 (198)
                      ++|.+++|||.|+-++-..   +...+..-.|..+.+.       .....+++|||.|.          +.+......|+
T Consensus         2 llgds~~gktcllir~kdg---afl~~~fistvgid~rnkli~~~~~kvklqiwdtagq----------erfrsvt~ayy   68 (192)
T KOG0083|consen    2 LLGDSCTGKTCLLIRFKDG---AFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQ----------ERFRSVTHAYY   68 (192)
T ss_pred             ccccCccCceEEEEEeccC---ceecCceeeeeeeccccceeccCCcEEEEEEeeccch----------HHHhhhhHhhh
Confidence            6899999999998887655   3333333334443322       23467999999993          55566666677


Q ss_pred             hcccccceEEEEEeCCCCCCcC-cHHHHHHHHhh---CCcEEEEEeccCCCCcHHHH-HHHHHHHHHHHhccCCCCCcEE
Q 029158           99 STRVSLKRVCLLIDTKWGVKPR-DHELISLMERS---QTKYQVVLTKTDTVFPIDVA-RRAMQIEESLKANNSLVQPVMM  173 (198)
Q Consensus        99 ~~~~~~d~vi~v~d~~~~~~~~-~~~~~~~~~~~---~~p~iiv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~  173 (198)
                      +.   +|+++++.|.....+-. -..|+.++.+.   .+.+.++.||||+.....+. +.-+.+.+..      ++|+.+
T Consensus        69 rd---a~allllydiankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~er~v~~ddg~kla~~y------~ipfme  139 (192)
T KOG0083|consen   69 RD---ADALLLLYDIANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAHERAVKRDDGEKLAEAY------GIPFME  139 (192)
T ss_pred             cc---cceeeeeeecccchhHHHHHHHHHHHHHHHHhhHhHhhhccccccchhhccccchHHHHHHHH------CCCcee
Confidence            66   89999999987633322 24566666554   47789999999997643211 1123333333      489999


Q ss_pred             eccCCCCChHHHHHHHHHhhc
Q 029158          174 VSSKSGAGIRSLRTVLSKIAR  194 (198)
Q Consensus       174 ~Sa~~~~gi~~l~~~i~~~~~  194 (198)
                      +|||+|.|++-.+-.|.+.+.
T Consensus       140 tsaktg~nvd~af~~ia~~l~  160 (192)
T KOG0083|consen  140 TSAKTGFNVDLAFLAIAEELK  160 (192)
T ss_pred             ccccccccHhHHHHHHHHHHH
Confidence            999999999999988877654

>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.59  E-value=1.9e-14  Score=94.64  Aligned_cols=149  Identities=17%  Similarity=0.154  Sum_probs=98.5

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCC---ceeEEEEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHHH
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPG---LTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY   97 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~---~t~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~   97 (198)
                      ..+..++|..|+|||.|+..+...+..+......+   -|+-+.+......+++|||.|          ++.+....+.|
T Consensus        11 ifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtag----------qerfravtrsy   80 (215)
T KOG0097|consen   11 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAG----------QERFRAVTRSY   80 (215)
T ss_pred             eEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeeccc----------HHHHHHHHHHH
Confidence            45788999999999999999988743332222211   233345555567899999999          46778888888


Q ss_pred             HhcccccceEEEEEeCCCCCCcCcH-HHHHHHHh---hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEE
Q 029158           98 VSTRVSLKRVCLLIDTKWGVKPRDH-ELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMM  173 (198)
Q Consensus        98 ~~~~~~~d~vi~v~d~~~~~~~~~~-~~~~~~~~---~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  173 (198)
                      +++   +.+.++|.|.........+ .|+-..+.   .+.-++++.||.|+....++.  .++.++...   ..+..+++
T Consensus        81 yrg---aagalmvyditrrstynhlsswl~dar~ltnpnt~i~lignkadle~qrdv~--yeeak~fae---engl~fle  152 (215)
T KOG0097|consen   81 YRG---AAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLESQRDVT--YEEAKEFAE---ENGLMFLE  152 (215)
T ss_pred             hcc---ccceeEEEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhhhcccCc--HHHHHHHHh---hcCeEEEE
Confidence            887   6778899998753222221 12222222   245678899999997655331  122222222   22578999


Q ss_pred             eccCCCCChHHHHH
Q 029158          174 VSSKSGAGIRSLRT  187 (198)
Q Consensus       174 ~Sa~~~~gi~~l~~  187 (198)
                      +|||+|+++++.|-
T Consensus       153 ~saktg~nvedafl  166 (215)
T KOG0097|consen  153 ASAKTGQNVEDAFL  166 (215)
T ss_pred             ecccccCcHHHHHH
Confidence            99999999988664

>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.59  E-value=7.5e-14  Score=106.56  Aligned_cols=152  Identities=20%  Similarity=0.316  Sum_probs=104.4

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCcccee------ecCCCCceeEEEEEE-------eCCceEEEeCCCCccccchhH--
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQWGVVR------TSDKPGLTQTINFFK-------LGTKLCLVDLPGYGFAYAKEE--   85 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~~~~~~------~~~~~~~t~~~~~~~-------~~~~~~iiDtpG~~~~~~~~~--   85 (198)
                      ...++++|++|.|||||+|.|+... +..      ....+..|..+....       ...+++++||||+|+......  
T Consensus        21 ~ftlmvvG~sGlGKsTfiNsLf~~~-l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w   99 (366)
T KOG2655|consen   21 DFTLMVVGESGLGKSTFINSLFLTD-LSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCW   99 (366)
T ss_pred             ceEEEEecCCCccHHHHHHHHHhhh-ccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccc
Confidence            4689999999999999999999873 111      111111222222111       125789999999998653332  


Q ss_pred             --HHHHHHHHHHHHHhccc----------ccceEEEEEeC-CCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHH
Q 029158           86 --VKDAWEELVKEYVSTRV----------SLKRVCLLIDT-KWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVAR  152 (198)
Q Consensus        86 --~~~~~~~~~~~~~~~~~----------~~d~vi~v~d~-~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~  152 (198)
                        +...++...++|+....          ..++++|.+.+ .+++...|.+.++.+.. .+++|.|+.|+|..++.++..
T Consensus       100 ~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di~~Mk~l~~-~vNiIPVI~KaD~lT~~El~~  178 (366)
T KOG2655|consen  100 RPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDIEFMKKLSK-KVNLIPVIAKADTLTKDELNQ  178 (366)
T ss_pred             hhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhHHHHHHHhc-cccccceeeccccCCHHHHHH
Confidence              33444444555554321          36678888765 55789999999988876 799999999999999999999


Q ss_pred             HHHHHHHHHHhccCCCCCcEEeccC
Q 029158          153 RAMQIEESLKANNSLVQPVMMVSSK  177 (198)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~v~~~Sa~  177 (198)
                      ....+.+.+....   ++++.....
T Consensus       179 ~K~~I~~~i~~~n---I~vf~fp~~  200 (366)
T KOG2655|consen  179 FKKRIRQDIEEHN---IKVFDFPTD  200 (366)
T ss_pred             HHHHHHHHHHHcC---cceecCCCC
Confidence            9999998887653   555544433

>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]

Probab=99.59  E-value=1.9e-14  Score=110.98  Aligned_cols=116  Identities=18%  Similarity=0.244  Sum_probs=84.8

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhc--Cc------------cceeecC------CCC---ceeEEEEEEeCCceEEEeCC
Q 029158           19 PDLPEIAFAGRSNVGKSSMLNALTR--QW------------GVVRTSD------KPG---LTQTINFFKLGTKLCLVDLP   75 (198)
Q Consensus        19 ~~~~~v~~vG~~~~GKSsli~~l~~--~~------------~~~~~~~------~~~---~t~~~~~~~~~~~~~iiDtp   75 (198)
                      .++...+++..|.+|||||-..|+-  .-            .....++      ..+   ++.-.++.+.+..+.++|||
T Consensus        10 ~rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTP   89 (528)
T COG4108          10 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTP   89 (528)
T ss_pred             hhhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCC
Confidence            3567899999999999999998772  10            0000111      111   33335677778899999999


Q ss_pred             CCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCc
Q 029158           76 GYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFP  147 (198)
Q Consensus        76 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~  147 (198)
                      |+.+             +-...|+.+..+|.+++|+|+..|+....+++++..+..++|++-.+||+|....
T Consensus        90 GHeD-------------FSEDTYRtLtAvDsAvMVIDaAKGiE~qT~KLfeVcrlR~iPI~TFiNKlDR~~r  148 (528)
T COG4108          90 GHED-------------FSEDTYRTLTAVDSAVMVIDAAKGIEPQTLKLFEVCRLRDIPIFTFINKLDREGR  148 (528)
T ss_pred             Cccc-------------cchhHHHHHHhhheeeEEEecccCccHHHHHHHHHHhhcCCceEEEeeccccccC
Confidence            9832             2333333344489999999999999999999999988889999999999997643

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=99.58  E-value=1e-14  Score=115.86  Aligned_cols=156  Identities=15%  Similarity=0.130  Sum_probs=105.8

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCC-CCceeEEEEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHHHH
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDK-PGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV   98 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~-~~~t~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~   98 (198)
                      .-.||+++|..|+||||||.+|+..+++..+.+. +.++.+..+........++||+.-.+.      +..       ..
T Consensus         8 kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IPadvtPe~vpt~ivD~ss~~~~------~~~-------l~   74 (625)
T KOG1707|consen    8 KDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIPADVTPENVPTSIVDTSSDSDD------RLC-------LR   74 (625)
T ss_pred             cceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccCCccCcCcCceEEEecccccch------hHH-------HH
Confidence            3468999999999999999999998654444443 345666667777778999999863221      111       11


Q ss_pred             hcccccceEEEEEeCCC--CCCcCcHHHHHHHHh-----hCCcEEEEEeccCCCCcHHH--HHHHHHHHHHHHhccCCCC
Q 029158           99 STRVSLKRVCLLIDTKW--GVKPRDHELISLMER-----SQTKYQVVLTKTDTVFPIDV--ARRAMQIEESLKANNSLVQ  169 (198)
Q Consensus        99 ~~~~~~d~vi~v~d~~~--~~~~~~~~~~~~~~~-----~~~p~iiv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~  169 (198)
                      ...+.+|+++++....+  .+......|+-.++.     .++|+|+|.||+|.......  +.....+..++..    ..
T Consensus        75 ~EirkA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~E----iE  150 (625)
T KOG1707|consen   75 KEIRKADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAE----IE  150 (625)
T ss_pred             HHHhhcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHH----HH
Confidence            22233899999987654  222333456665553     36999999999999876543  2223333333332    35


Q ss_pred             CcEEeccCCCCChHHHHHHHHHh
Q 029158          170 PVMMVSSKSGAGIRSLRTVLSKI  192 (198)
Q Consensus       170 ~v~~~Sa~~~~gi~~l~~~i~~~  192 (198)
                      ++|.|||++..++.+++-..++.
T Consensus       151 tciecSA~~~~n~~e~fYyaqKa  173 (625)
T KOG1707|consen  151 TCIECSALTLANVSELFYYAQKA  173 (625)
T ss_pred             HHHhhhhhhhhhhHhhhhhhhhe
Confidence            78999999999999998876654

>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]

Probab=99.58  E-value=8.2e-14  Score=92.81  Aligned_cols=156  Identities=18%  Similarity=0.164  Sum_probs=107.4

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEe------CCceEEEeCCCCccccchhHHHHHHHHH
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL------GTKLCLVDLPGYGFAYAKEEVKDAWEEL   93 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~------~~~~~iiDtpG~~~~~~~~~~~~~~~~~   93 (198)
                      ..-+|+++|..++|||+++..|+... ........+|..++-....      .-.+.+.||.|+.+..         .++
T Consensus         8 k~~kVvVcG~k~VGKTaileQl~yg~-~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~---------~eL   77 (198)
T KOG3883|consen    8 KVCKVVVCGMKSVGKTAILEQLLYGN-HVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQ---------QEL   77 (198)
T ss_pred             cceEEEEECCccccHHHHHHHHHhcc-CCCCCccccchhhheeEeeecCCChhheEEEeecccccCch---------hhh
Confidence            34589999999999999999998773 2333334445455432222      3579999999985531         344


Q ss_pred             HHHHHhcccccceEEEEEeCCCCCCcCcHHHH-HHHHh----hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCC
Q 029158           94 VKEYVSTRVSLKRVCLLIDTKWGVKPRDHELI-SLMER----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLV  168 (198)
Q Consensus        94 ~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~-~~~~~----~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  168 (198)
                      -+.|++.   +|+.++|.++.+.-+-...+.+ +.+.+    ..+|+++++||+|+..+.+......+.+...+     .
T Consensus        78 prhy~q~---aDafVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~rE-----k  149 (198)
T KOG3883|consen   78 PRHYFQF---ADAFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDMDVAQIWAKRE-----K  149 (198)
T ss_pred             hHhHhcc---CceEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchhcCHHHHHHHHhhh-----h
Confidence            5566665   8999999998763222222332 22322    25899999999999887766655555554433     3


Q ss_pred             CCcEEeccCCCCChHHHHHHHHHhh
Q 029158          169 QPVMMVSSKSGAGIRSLRTVLSKIA  193 (198)
Q Consensus       169 ~~v~~~Sa~~~~gi~~l~~~i~~~~  193 (198)
                      +..+++++++...+-+.|.++...+
T Consensus       150 vkl~eVta~dR~sL~epf~~l~~rl  174 (198)
T KOG3883|consen  150 VKLWEVTAMDRPSLYEPFTYLASRL  174 (198)
T ss_pred             eeEEEEEeccchhhhhHHHHHHHhc
Confidence            7899999999999999998877643

>TIGR00750 lao LAO/AO transport system ATPase

Probab=99.57  E-value=2.7e-13  Score=103.62  Aligned_cols=109  Identities=17%  Similarity=0.170  Sum_probs=66.3

Q ss_pred             CCceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCC
Q 029158           66 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV  145 (198)
Q Consensus        66 ~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~  145 (198)
                      +.++.|+||+|.+...         ....       ..+|.++++.+...   ..+.+.+..- -.++|.++|+||+|+.
T Consensus       126 g~D~viidT~G~~~~e---------~~i~-------~~aD~i~vv~~~~~---~~el~~~~~~-l~~~~~ivv~NK~Dl~  185 (300)
T TIGR00750       126 GYDVIIVETVGVGQSE---------VDIA-------NMADTFVVVTIPGT---GDDLQGIKAG-LMEIADIYVVNKADGE  185 (300)
T ss_pred             CCCEEEEeCCCCchhh---------hHHH-------HhhceEEEEecCCc---cHHHHHHHHH-HhhhccEEEEEccccc
Confidence            4689999999975321         1111       12778887765432   2232322211 1368889999999998


Q ss_pred             CcHHHHHHHHHHHHHHHh----ccCCCCCcEEeccCCCCChHHHHHHHHHhhc
Q 029158          146 FPIDVARRAMQIEESLKA----NNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR  194 (198)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~----~~~~~~~v~~~Sa~~~~gi~~l~~~i~~~~~  194 (198)
                      ...+.......+...+..    ......+++++||++++|+++++++|.++..
T Consensus       186 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~  238 (300)
T TIGR00750       186 GATNVTIARLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT  238 (300)
T ss_pred             chhHHHHHHHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence            765432222222111111    1112347999999999999999999988654

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=99.56  E-value=1.5e-14  Score=108.25  Aligned_cols=161  Identities=14%  Similarity=0.093  Sum_probs=87.1

Q ss_pred             CCCCCCeEEEEcCCCCCHHHHHHHHhcC----ccceeecCCCCceeEEE-EEEeCCceEEEeCCCCccccchhHHHHHHH
Q 029158           17 PAPDLPEIAFAGRSNVGKSSMLNALTRQ----WGVVRTSDKPGLTQTIN-FFKLGTKLCLVDLPGYGFAYAKEEVKDAWE   91 (198)
Q Consensus        17 ~~~~~~~v~~vG~~~~GKSsli~~l~~~----~~~~~~~~~~~~t~~~~-~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~   91 (198)
                      ...+...|.++|++|||||||++.+++.    .......+...+..+.. +...+.++.-+.|.+... .........+.
T Consensus       100 ~~~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~~~~~VI~gD~~t~~Da~rI~~~g~pvvqi~tG~~Ch-l~a~mv~~Al~  178 (290)
T PRK10463        100 AARKQLVLNLVSSPGSGKTTLLTETLMRLKDSVPCAVIEGDQQTVNDAARIRATGTPAIQVNTGKGCH-LDAQMIADAAP  178 (290)
T ss_pred             HhcCCeEEEEECCCCCCHHHHHHHHHHHhccCCCEEEECCCcCcHHHHHHHHhcCCcEEEecCCCCCc-CcHHHHHHHHH
Confidence            3455678999999999999999887754    12334444433332321 111234445555543221 11112222222


Q ss_pred             HHHHHHHhcccccce---------------------EEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCc--H
Q 029158           92 ELVKEYVSTRVSLKR---------------------VCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFP--I  148 (198)
Q Consensus        92 ~~~~~~~~~~~~~d~---------------------vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~--~  148 (198)
                      .+...      ..|.                     -+.+++..++..    +.+++-.....+-++|+||+|+.+.  .
T Consensus       179 ~L~~~------~~d~liIEnvGnLvcPa~fdlge~~~v~vlsV~eg~d----kplKyp~~f~~ADIVVLNKiDLl~~~~~  248 (290)
T PRK10463        179 RLPLD------DNGILFIENVGNLVCPASFDLGEKHKVAVLSVTEGED----KPLKYPHMFAAASLMLLNKVDLLPYLNF  248 (290)
T ss_pred             HHhhc------CCcEEEEECCCCccCCCccchhhceeEEEEECccccc----cchhccchhhcCcEEEEEhHHcCcccHH
Confidence            22110      0111                     122333332210    1111112224667999999999863  2


Q ss_pred             HHHHHHHHHHHHHHhccCCCCCcEEeccCCCCChHHHHHHHHHhh
Q 029158          149 DVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA  193 (198)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~~~gi~~l~~~i~~~~  193 (198)
                      +++...+.+++.     .+..+++++||++|+|+++|.+||.+..
T Consensus       249 dle~~~~~lr~l-----np~a~I~~vSA~tGeGld~L~~~L~~~~  288 (290)
T PRK10463        249 DVEKCIACAREV-----NPEIEIILISATSGEGMDQWLNWLETQR  288 (290)
T ss_pred             HHHHHHHHHHhh-----CCCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence            444444444433     2368899999999999999999998854

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=99.55  E-value=6.4e-14  Score=102.26  Aligned_cols=151  Identities=19%  Similarity=0.279  Sum_probs=88.9

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCc-----cceeecCCCC--ceeE-----------------EEEEE-----------
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQW-----GVVRTSDKPG--LTQT-----------------INFFK-----------   64 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~~-----~~~~~~~~~~--~t~~-----------------~~~~~-----------   64 (198)
                      +..+|.+.|+||+|||||+++|....     +++...-.|.  .|-.                 .-+..           
T Consensus        28 ~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGls  107 (266)
T PF03308_consen   28 RAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGLS  107 (266)
T ss_dssp             -SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHHH
T ss_pred             CceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCcc
Confidence            45689999999999999999987431     2222211111  0100                 00111           


Q ss_pred             ------------eCCceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcH--HHHHHHHh
Q 029158           65 ------------LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDH--ELISLMER  130 (198)
Q Consensus        65 ------------~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~--~~~~~~~~  130 (198)
                                  .++++.|++|.|.|...         -+..       ..+|.+++|+-+..|-.-+..  -+++.   
T Consensus       108 ~~t~~~v~ll~aaG~D~IiiETVGvGQsE---------~~I~-------~~aD~~v~v~~Pg~GD~iQ~~KaGimEi---  168 (266)
T PF03308_consen  108 RATRDAVRLLDAAGFDVIIIETVGVGQSE---------VDIA-------DMADTVVLVLVPGLGDEIQAIKAGIMEI---  168 (266)
T ss_dssp             HHHHHHHHHHHHTT-SEEEEEEESSSTHH---------HHHH-------TTSSEEEEEEESSTCCCCCTB-TTHHHH---
T ss_pred             HhHHHHHHHHHHcCCCEEEEeCCCCCccH---------HHHH-------HhcCeEEEEecCCCccHHHHHhhhhhhh---
Confidence                        13589999999987531         1111       238999999877665433332  23333   


Q ss_pred             hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhcc----CCCCCcEEeccCCCCChHHHHHHHHHhhcc
Q 029158          131 SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANN----SLVQPVMMVSSKSGAGIRSLRTVLSKIARF  195 (198)
Q Consensus       131 ~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~----~~~~~v~~~Sa~~~~gi~~l~~~i~~~~~~  195 (198)
                         .-|+|+||+|+...   +....+++..+....    ....|++.+||.+++|+++|++.|.++..+
T Consensus       169 ---aDi~vVNKaD~~gA---~~~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~~~  231 (266)
T PF03308_consen  169 ---ADIFVVNKADRPGA---DRTVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHRDY  231 (266)
T ss_dssp             ----SEEEEE--SHHHH---HHHHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHHHH
T ss_pred             ---ccEEEEeCCChHHH---HHHHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence               33999999995433   333444554444332    223689999999999999999999987654

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=99.55  E-value=3.7e-13  Score=99.30  Aligned_cols=117  Identities=21%  Similarity=0.264  Sum_probs=59.6

Q ss_pred             ceEEEeCCCCccccchhHHHHHHHHHHHHHHhccc--ccceEEEEEeCCCCCCcCcHHHH-------HHHHhhCCcEEEE
Q 029158           68 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRV--SLKRVCLLIDTKWGVKPRDHELI-------SLMERSQTKYQVV  138 (198)
Q Consensus        68 ~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~--~~d~vi~v~d~~~~~~~~~~~~~-------~~~~~~~~p~iiv  138 (198)
                      .+.++||||..+-.       .+........+...  ..-++++++|+...  .....++       ....+.+.|.|.|
T Consensus        92 ~y~l~DtPGQiElf-------~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~--~~~~~f~s~~L~s~s~~~~~~lP~vnv  162 (238)
T PF03029_consen   92 DYLLFDTPGQIELF-------THSDSGRKIVERLQKNGRLVVVFLVDSSFC--SDPSKFVSSLLLSLSIMLRLELPHVNV  162 (238)
T ss_dssp             SEEEEE--SSHHHH-------HHSHHHHHHHHTSSS----EEEEEE-GGG---SSHHHHHHHHHHHHHHHHHHTSEEEEE
T ss_pred             cEEEEeCCCCEEEE-------EechhHHHHHHHHhhhcceEEEEEEecccc--cChhhHHHHHHHHHHHHhhCCCCEEEe
Confidence            79999999974421       11222222333322  24468899999752  2222222       2223458999999


Q ss_pred             EeccCCCCcHHHHHHH-----------------HHHHHHHH-hccCC--CCCcEEeccCCCCChHHHHHHHHHhhc
Q 029158          139 LTKTDTVFPIDVARRA-----------------MQIEESLK-ANNSL--VQPVMMVSSKSGAGIRSLRTVLSKIAR  194 (198)
Q Consensus       139 ~nK~Dl~~~~~~~~~~-----------------~~~~~~~~-~~~~~--~~~v~~~Sa~~~~gi~~l~~~i~~~~~  194 (198)
                      +||+|+.... .+...                 ..+.+.+. .....  ..+++++|+++++|+++|+..|.+..+
T Consensus       163 lsK~Dl~~~~-~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~~  237 (238)
T PF03029_consen  163 LSKIDLLSKY-LEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKANQ  237 (238)
T ss_dssp             E--GGGS-HH-HHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHHH
T ss_pred             eeccCcccch-hHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHhc
Confidence            9999999833 11111                 11111111 11111  237999999999999999999998765

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains

Probab=99.54  E-value=8.3e-13  Score=107.63  Aligned_cols=126  Identities=20%  Similarity=0.206  Sum_probs=80.4

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCC-CCceeEEEEE--EeCCceEEEeCCCCccccchhHHHHHHHHHHHH
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDK-PGLTQTINFF--KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE   96 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~-~~~t~~~~~~--~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~   96 (198)
                      ...+|+++|.+|+||||++|+|++.. ....... +.||......  ..+..+.+|||||+.+..........+...+..
T Consensus       117 fslrIvLVGKTGVGKSSLINSILGek-vf~vss~~~~TTr~~ei~~~idG~~L~VIDTPGL~dt~~dq~~neeILk~Ik~  195 (763)
T TIGR00993       117 FSLNILVLGKSGVGKSATINSIFGEV-KFSTDAFGMGTTSVQEIEGLVQGVKIRVIDTPGLKSSASDQSKNEKILSSVKK  195 (763)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhccc-cccccCCCCCceEEEEEEEEECCceEEEEECCCCCccccchHHHHHHHHHHHH
Confidence            45689999999999999999999983 3444444 4455433332  236789999999998753322222222222333


Q ss_pred             HHhcccccceEEEEEeCCCCCC-cCcHHHHHHHHhh-----CCcEEEEEeccCCCCc
Q 029158           97 YVSTRVSLKRVCLLIDTKWGVK-PRDHELISLMERS-----QTKYQVVLTKTDTVFP  147 (198)
Q Consensus        97 ~~~~~~~~d~vi~v~d~~~~~~-~~~~~~~~~~~~~-----~~p~iiv~nK~Dl~~~  147 (198)
                      ++.. ..+|+++||+....... ..+..+++.+...     -..+|+|+|+.|...+
T Consensus       196 ~Lsk-~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lpp  251 (763)
T TIGR00993       196 FIKK-NPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAPP  251 (763)
T ss_pred             HHhc-CCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCCC
Confidence            3332 24788998886543212 2344556666432     3678999999999864

The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.

>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]

Probab=99.54  E-value=3.6e-13  Score=99.22  Aligned_cols=150  Identities=20%  Similarity=0.241  Sum_probs=110.1

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCc--------------cceeecCCCCceeEE---EEEEeCCceEEEeCCCCccccc
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQW--------------GVVRTSDKPGLTQTI---NFFKLGTKLCLVDLPGYGFAYA   82 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~~--------------~~~~~~~~~~~t~~~---~~~~~~~~~~iiDtpG~~~~~~   82 (198)
                      ...+|..+|..+.|||||..++....              ..+......+.|...   .+...+..+..+|+||+     
T Consensus        11 phVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGH-----   85 (394)
T COG0050          11 PHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGH-----   85 (394)
T ss_pred             CeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCCh-----
Confidence            45689999999999999999887431              001112223445442   23334678999999998     


Q ss_pred             hhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCc-EEEEEeccCCCCcHHHH-HHHHHHHHH
Q 029158           83 KEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKTDTVFPIDVA-RRAMQIEES  160 (198)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~~~~~-~~~~~~~~~  160 (198)
                              .+++.+++....+.|+.|+|+.+.+++..+.++.+-..+..++| +++.+||+|+++..++. ....++.+.
T Consensus        86 --------aDYvKNMItgAaqmDgAILVVsA~dGpmPqTrEHiLlarqvGvp~ivvflnK~Dmvdd~ellelVemEvreL  157 (394)
T COG0050          86 --------ADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYIVVFLNKVDMVDDEELLELVEMEVREL  157 (394)
T ss_pred             --------HHHHHHHhhhHHhcCccEEEEEcCCCCCCcchhhhhhhhhcCCcEEEEEEecccccCcHHHHHHHHHHHHHH
Confidence                    67788899999999999999999999999999988878877886 66789999999866554 445666666


Q ss_pred             HHhccCC--CCCcEEeccCC-CCCh
Q 029158          161 LKANNSL--VQPVMMVSSKS-GAGI  182 (198)
Q Consensus       161 ~~~~~~~--~~~v~~~Sa~~-~~gi  182 (198)
                      +.....+  ..|++.-||.. .+|-
T Consensus       158 Ls~y~f~gd~~Pii~gSal~ale~~  182 (394)
T COG0050         158 LSEYGFPGDDTPIIRGSALKALEGD  182 (394)
T ss_pred             HHHcCCCCCCcceeechhhhhhcCC
Confidence            6655433  57888888743 3443

>TIGR02836 spore_IV_A stage IV sporulation protein A

Probab=99.53  E-value=1.4e-13  Score=106.55  Aligned_cols=163  Identities=18%  Similarity=0.178  Sum_probs=98.7

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCcc---ce-----------eecCCCC---ceeEEEE--------EEe---CCceE
Q 029158           19 PDLPEIAFAGRSNVGKSSMLNALTRQWG---VV-----------RTSDKPG---LTQTINF--------FKL---GTKLC   70 (198)
Q Consensus        19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~---~~-----------~~~~~~~---~t~~~~~--------~~~---~~~~~   70 (198)
                      .+..-|.++|+.++|||||+|+|.++-.   +.           -..+.+|   +|.+..+        ...   ..+++
T Consensus        15 ~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vr   94 (492)
T TIGR02836        15 QGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVR   94 (492)
T ss_pred             CCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEE
Confidence            3567799999999999999999998721   11           2334455   4443222        111   37899


Q ss_pred             EEeCCCCccccchhHHH-HH------------------HHHHHHHHHhcccccceEEEEE-eCC------CCCCcCcHHH
Q 029158           71 LVDLPGYGFAYAKEEVK-DA------------------WEELVKEYVSTRVSLKRVCLLI-DTK------WGVKPRDHEL  124 (198)
Q Consensus        71 iiDtpG~~~~~~~~~~~-~~------------------~~~~~~~~~~~~~~~d~vi~v~-d~~------~~~~~~~~~~  124 (198)
                      ++||+|+...-.....+ +.                  -+--.+..+..  .+|..++|. |.+      .+....+.++
T Consensus        95 lIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~d--hstIgivVtTDgsi~dI~Re~y~~aEe~~  172 (492)
T TIGR02836        95 LVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQE--HSTIGVVVTTDGTITDIPREDYVEAEERV  172 (492)
T ss_pred             EEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHh--cCcEEEEEEcCCCccccccccchHHHHHH
Confidence            99999985421111100 00                  00001222221  378888888 875      3455667788


Q ss_pred             HHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEeccCC--CCChHHHHHHHH
Q 029158          125 ISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKS--GAGIRSLRTVLS  190 (198)
Q Consensus       125 ~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~--~~gi~~l~~~i~  190 (198)
                      +..+...++|+++|+||+|-..++. ....+.+++.+      +.|++++|+-.  .+.+..+++.+.
T Consensus       173 i~eLk~~~kPfiivlN~~dp~~~et-~~l~~~l~eky------~vpvl~v~c~~l~~~DI~~il~~vL  233 (492)
T TIGR02836       173 IEELKELNKPFIILLNSTHPYHPET-EALRQELEEKY------DVPVLAMDVESMRESDILSVLEEVL  233 (492)
T ss_pred             HHHHHhcCCCEEEEEECcCCCCchh-HHHHHHHHHHh------CCceEEEEHHHcCHHHHHHHHHHHH
Confidence            9999999999999999999544332 22233333322      37888888854  455555555443

A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.

>TIGR00490 aEF-2 translation elongation factor aEF-2

Probab=99.53  E-value=2.6e-14  Score=120.74  Aligned_cols=115  Identities=16%  Similarity=0.190  Sum_probs=79.6

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCccc--------eeecC------CCCceeEEE-------EEEeCCceEEEeCCCC
Q 029158           19 PDLPEIAFAGRSNVGKSSMLNALTRQWGV--------VRTSD------KPGLTQTIN-------FFKLGTKLCLVDLPGY   77 (198)
Q Consensus        19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~~--------~~~~~------~~~~t~~~~-------~~~~~~~~~iiDtpG~   77 (198)
                      ...++|+++|..++|||||+++|+.....        ....+      ..++|....       +...+..+.+|||||+
T Consensus        17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~   96 (720)
T TIGR00490        17 KFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGH   96 (720)
T ss_pred             ccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCc
Confidence            34679999999999999999999753100        00001      122333221       1223578999999997


Q ss_pred             ccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCC
Q 029158           78 GFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF  146 (198)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~  146 (198)
                      .+-             ..........+|++++|+|+..++...+..++..+...+.|.++++||+|...
T Consensus        97 ~~f-------------~~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~  152 (720)
T TIGR00490        97 VDF-------------GGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQALKENVKPVLFINKVDRLI  152 (720)
T ss_pred             ccc-------------HHHHHHHHHhcCEEEEEEecCCCCCccHHHHHHHHHHcCCCEEEEEEChhccc
Confidence            431             11222333449999999999998888888888877777889999999999974

This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.

>PTZ00099 rab6; Provisional

Probab=99.51  E-value=1.7e-13  Score=96.86  Aligned_cols=112  Identities=16%  Similarity=0.093  Sum_probs=72.4

Q ss_pred             CCceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHh---hCCcEEEEEec
Q 029158           66 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTK  141 (198)
Q Consensus        66 ~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~---~~~p~iiv~nK  141 (198)
                      ...+.||||||..          .+..+...|+.   .+|++++|+|.++..+-.. ..++..+..   ...|+++|+||
T Consensus        28 ~v~l~iwDt~G~e----------~~~~~~~~~~~---~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~~~~piilVgNK   94 (176)
T PTZ00099         28 PVRLQLWDTAGQE----------RFRSLIPSYIR---DSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNK   94 (176)
T ss_pred             EEEEEEEECCChH----------HhhhccHHHhC---CCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEEC
Confidence            4678999999952          22334445554   4899999999987322112 234444432   25789999999


Q ss_pred             cCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEeccCCCCChHHHHHHHHHhhcc
Q 029158          142 TDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIARF  195 (198)
Q Consensus       142 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~~~gi~~l~~~i~~~~~~  195 (198)
                      +|+........  .........   ....++++||++|+|+++++++|.+.+..
T Consensus        95 ~DL~~~~~v~~--~e~~~~~~~---~~~~~~e~SAk~g~nV~~lf~~l~~~l~~  143 (176)
T PTZ00099         95 TDLGDLRKVTY--EEGMQKAQE---YNTMFHETSAKAGHNIKVLFKKIAAKLPN  143 (176)
T ss_pred             cccccccCCCH--HHHHHHHHH---cCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            99964321110  111111111   13578999999999999999999988754

>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

Probab=99.51  E-value=5.2e-13  Score=98.89  Aligned_cols=156  Identities=19%  Similarity=0.218  Sum_probs=92.4

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCc-----cceeecCCCC--ceeE-----------------EEEEE------------
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQW-----GVVRTSDKPG--LTQT-----------------INFFK------------   64 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~~-----~~~~~~~~~~--~t~~-----------------~~~~~------------   64 (198)
                      ..+|.+.|.||+|||||+..|....     .++...-.|.  .|-.                 .-+..            
T Consensus        51 a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~lGGlS~  130 (323)
T COG1703          51 AHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGTLGGLSR  130 (323)
T ss_pred             CcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCccchhhhH
Confidence            4589999999999999999987421     2222211111  1100                 00100            


Q ss_pred             -----------eCCceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCC
Q 029158           65 -----------LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQT  133 (198)
Q Consensus        65 -----------~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~  133 (198)
                                 .++.+.|++|.|.|...         -+....       +|.+++|.-+..|-.   .+.++. .-..+
T Consensus       131 at~~~i~~ldAaG~DvIIVETVGvGQse---------v~I~~~-------aDt~~~v~~pg~GD~---~Q~iK~-GimEi  190 (323)
T COG1703         131 ATREAIKLLDAAGYDVIIVETVGVGQSE---------VDIANM-------ADTFLVVMIPGAGDD---LQGIKA-GIMEI  190 (323)
T ss_pred             HHHHHHHHHHhcCCCEEEEEecCCCcch---------hHHhhh-------cceEEEEecCCCCcH---HHHHHh-hhhhh
Confidence                       13589999999987641         222222       788888876654322   111110 01123


Q ss_pred             cEEEEEeccCCCCcHHHH-HHHHHHHHHH--HhccCCCCCcEEeccCCCCChHHHHHHHHHhhccc
Q 029158          134 KYQVVLTKTDTVFPIDVA-RRAMQIEESL--KANNSLVQPVMMVSSKSGAGIRSLRTVLSKIARFA  196 (198)
Q Consensus       134 p~iiv~nK~Dl~~~~~~~-~~~~~~~~~~--~~~~~~~~~v~~~Sa~~~~gi~~l~~~i~~~~~~~  196 (198)
                      --|+|+||.|....+... ++...++...  ........|++.+||.+|+|+++|++.|.++.++.
T Consensus       191 aDi~vINKaD~~~A~~a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~~~  256 (323)
T COG1703         191 ADIIVINKADRKGAEKAARELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRKFL  256 (323)
T ss_pred             hheeeEeccChhhHHHHHHHHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHHHH
Confidence            449999999965443222 2222222221  22334468899999999999999999999988753

>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]

Probab=99.51  E-value=3.6e-13  Score=102.81  Aligned_cols=87  Identities=23%  Similarity=0.226  Sum_probs=69.1

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEE---------------------eCCceEEEeCCCCcc
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---------------------LGTKLCLVDLPGYGF   79 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~---------------------~~~~~~iiDtpG~~~   79 (198)
                      ..++.+||.||+|||||+|+++...  ....+||.||.+....-                     ....+.++|.+|+-.
T Consensus         2 ~l~~GIVGlPNVGKSTlFnAlT~~~--a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~   79 (372)
T COG0012           2 SLKIGIVGLPNVGKSTLFNALTKAG--AEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVK   79 (372)
T ss_pred             CceeEEecCCCCcHHHHHHHHHcCC--ccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCC
Confidence            4689999999999999999999984  78899999997743211                     124689999999865


Q ss_pred             ccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCC
Q 029158           80 AYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKW  115 (198)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~  115 (198)
                      +.+..      +.+-.+|+.+.+.+|+++.|+|+..
T Consensus        80 GAs~G------eGLGNkFL~~IRevdaI~hVVr~f~  109 (372)
T COG0012          80 GASKG------EGLGNKFLDNIREVDAIIHVVRCFG  109 (372)
T ss_pred             CcccC------CCcchHHHHhhhhcCeEEEEEEecC
Confidence            54333      4556688888888999999999875

>COG5258 GTPBP1 GTPase [General function prediction only]

Probab=99.51  E-value=3.1e-13  Score=102.90  Aligned_cols=160  Identities=23%  Similarity=0.297  Sum_probs=114.3

Q ss_pred             CCCCCeEEEEcCCCCCHHHHHHHHhcCc------------cceeecCCCCceeEEEE--EEe------------------
Q 029158           18 APDLPEIAFAGRSNVGKSSMLNALTRQW------------GVVRTSDKPGLTQTINF--FKL------------------   65 (198)
Q Consensus        18 ~~~~~~v~~vG~~~~GKSsli~~l~~~~------------~~~~~~~~~~~t~~~~~--~~~------------------   65 (198)
                      .+....|...|..++|||||+..|...+            .+....-..+-+.++.+  +..                  
T Consensus       114 ~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~  193 (527)
T COG5258         114 APEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKA  193 (527)
T ss_pred             CCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHh
Confidence            3456779999999999999999988542            00000111112222211  110                  


Q ss_pred             ------CCceEEEeCCCCccccchhHHHHHHHHHHHHHHhcc--cccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEE
Q 029158           66 ------GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTR--VSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQV  137 (198)
Q Consensus        66 ------~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~--~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~ii  137 (198)
                            +.-+.|+||.|+             +.+++..++..  +..|..++++-|.++++...++.+-.+...+.|+|+
T Consensus       194 ~vv~~aDklVsfVDtvGH-------------EpwLrTtirGL~gqk~dYglLvVaAddG~~~~tkEHLgi~~a~~lPviV  260 (527)
T COG5258         194 AVVKRADKLVSFVDTVGH-------------EPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMTKEHLGIALAMELPVIV  260 (527)
T ss_pred             HhhhhcccEEEEEecCCc-------------cHHHHHHHHHHhccccceEEEEEEccCCcchhhhHhhhhhhhhcCCEEE
Confidence                  124789999997             45555555443  358999999999999999999999988888999999


Q ss_pred             EEeccCCCCcHHHHHHHHHHHHHHHhccCC----------------------CCCcEEeccCCCCChHHHHHHHH
Q 029158          138 VLTKTDTVFPIDVARRAMQIEESLKANNSL----------------------VQPVMMVSSKSGAGIRSLRTVLS  190 (198)
Q Consensus       138 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~v~~~Sa~~~~gi~~l~~~i~  190 (198)
                      |+||+|+.+.+..+...+.+.+.+....+.                      ..|+|.+|+.+|+|++-|.+.+.
T Consensus       261 vvTK~D~~~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~f~  335 (527)
T COG5258         261 VVTKIDMVPDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEFFL  335 (527)
T ss_pred             EEEecccCcHHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHHHH
Confidence            999999999888777777777665532221                      47899999999999876666544

>KOG0410 consensus Predicted GTP binding protein [General function prediction only]

Probab=99.50  E-value=1.4e-13  Score=102.60  Aligned_cols=156  Identities=17%  Similarity=0.171  Sum_probs=103.2

Q ss_pred             CCCCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE----EEEeCCceEEEeCCCCccccchhHHHHHHHH
Q 029158           17 PAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN----FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEE   92 (198)
Q Consensus        17 ~~~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~----~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~   92 (198)
                      -....|.|+++|.+|+|||||+++|.+. . ....+...-|.|.+    ..+.+..+.+.||-||.... +...-..|..
T Consensus       174 ~~~s~pviavVGYTNaGKsTLikaLT~A-a-l~p~drLFATLDpT~h~a~Lpsg~~vlltDTvGFisdL-P~~LvaAF~A  250 (410)
T KOG0410|consen  174 EGESSPVIAVVGYTNAGKSTLIKALTKA-A-LYPNDRLFATLDPTLHSAHLPSGNFVLLTDTVGFISDL-PIQLVAAFQA  250 (410)
T ss_pred             ccCCCceEEEEeecCccHHHHHHHHHhh-h-cCccchhheeccchhhhccCCCCcEEEEeechhhhhhC-cHHHHHHHHH
Confidence            3455688999999999999999999965 2 22333334444433    22346789999999986532 1222222222


Q ss_pred             HHHHHHhcccccceEEEEEeCCCCCCcCcHH-HHHHHHhhCCc-------EEEEEeccCCCCcHHHHHHHHHHHHHHHhc
Q 029158           93 LVKEYVSTRVSLKRVCLLIDTKWGVKPRDHE-LISLMERSQTK-------YQVVLTKTDTVFPIDVARRAMQIEESLKAN  164 (198)
Q Consensus        93 ~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~~~~~p-------~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~  164 (198)
                          .+.....+|+++.|+|.+++..+...+ ++..+...++|       ++=|-||.|.....-..+            
T Consensus       251 ----TLeeVaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~e~E------------  314 (410)
T KOG0410|consen  251 ----TLEEVAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEVEEE------------  314 (410)
T ss_pred             ----HHHHHhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccccCccc------------
Confidence                223344589999999999966555544 45666655554       566889999865331100            


Q ss_pred             cCCCCCcEEeccCCCCChHHHHHHHHHhhc
Q 029158          165 NSLVQPVMMVSSKSGAGIRSLRTVLSKIAR  194 (198)
Q Consensus       165 ~~~~~~v~~~Sa~~~~gi~~l~~~i~~~~~  194 (198)
                         ..-.+.+||.+|+|++++++.+.....
T Consensus       315 ---~n~~v~isaltgdgl~el~~a~~~kv~  341 (410)
T KOG0410|consen  315 ---KNLDVGISALTGDGLEELLKAEETKVA  341 (410)
T ss_pred             ---cCCccccccccCccHHHHHHHHHHHhh
Confidence               122778999999999999999877653

>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=99.49  E-value=2.6e-14  Score=97.62  Aligned_cols=153  Identities=18%  Similarity=0.211  Sum_probs=104.9

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCC------ceeEEEEEEeCCceEEEeCCCCccccchhHHHHHHHH
Q 029158           19 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPG------LTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEE   92 (198)
Q Consensus        19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~------~t~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~   92 (198)
                      ....+++++|..++||||+|.++|..   .+..++..      ..+++.+...+....+|||.|.          +.++.
T Consensus        18 e~aiK~vivGng~VGKssmiqryCkg---ifTkdykktIgvdflerqi~v~~Edvr~mlWdtagq----------eEfDa   84 (246)
T KOG4252|consen   18 ERAIKFVIVGNGSVGKSSMIQRYCKG---IFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQ----------EEFDA   84 (246)
T ss_pred             hhhEEEEEECCCccchHHHHHHHhcc---ccccccccccchhhhhHHHHhhHHHHHHHHHHhccc----------hhHHH
Confidence            45689999999999999999999976   22222211      1223334444567889999994          45577


Q ss_pred             HHHHHHhcccccceEEEEEeCCCCCC-cCcHHHHHHHHhh--CCcEEEEEeccCCCCcHHHHH-HHHHHHHHHHhccCCC
Q 029158           93 LVKEYVSTRVSLKRVCLLIDTKWGVK-PRDHELISLMERS--QTKYQVVLTKTDTVFPIDVAR-RAMQIEESLKANNSLV  168 (198)
Q Consensus        93 ~~~~~~~~~~~~d~vi~v~d~~~~~~-~~~~~~~~~~~~~--~~p~iiv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~  168 (198)
                      +...|+++   +.+.++|+...+..+ +...+|...++..  ++|.++|-||+|+++...... ..+.+...+      .
T Consensus        85 ItkAyyrg---aqa~vLVFSTTDr~SFea~~~w~~kv~~e~~~IPtV~vqNKIDlveds~~~~~evE~lak~l------~  155 (246)
T KOG4252|consen   85 ITKAYYRG---AQASVLVFSTTDRYSFEATLEWYNKVQKETERIPTVFVQNKIDLVEDSQMDKGEVEGLAKKL------H  155 (246)
T ss_pred             HHHHHhcc---ccceEEEEecccHHHHHHHHHHHHHHHHHhccCCeEEeeccchhhHhhhcchHHHHHHHHHh------h
Confidence            77788877   566777777765222 2335566666543  699999999999987653322 112222222      3


Q ss_pred             CCcEEeccCCCCChHHHHHHHHHhh
Q 029158          169 QPVMMVSSKSGAGIRSLRTVLSKIA  193 (198)
Q Consensus       169 ~~v~~~Sa~~~~gi~~l~~~i~~~~  193 (198)
                      .+++-+|++..-|+..+|.++.+.+
T Consensus       156 ~RlyRtSvked~NV~~vF~YLaeK~  180 (246)
T KOG4252|consen  156 KRLYRTSVKEDFNVMHVFAYLAEKL  180 (246)
T ss_pred             hhhhhhhhhhhhhhHHHHHHHHHHH
Confidence            6788999999999999999988765

>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.48  E-value=4.8e-13  Score=106.50  Aligned_cols=140  Identities=14%  Similarity=0.187  Sum_probs=104.8

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE-EEEeCCceEEEeCCCCccccchhHHHHHHHHHHHHHH
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN-FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV   98 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~-~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~   98 (198)
                      ....|+++||||+||||||.+|............   +-+++ +.....+++|+++|.-                +.+++
T Consensus        68 PPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i---~GPiTvvsgK~RRiTflEcp~D----------------l~~mi  128 (1077)
T COG5192          68 PPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEI---RGPITVVSGKTRRITFLECPSD----------------LHQMI  128 (1077)
T ss_pred             CCeEEEeecCCCCChhHHHHHHHHHHHHhhhhcc---CCceEEeecceeEEEEEeChHH----------------HHHHH
Confidence            3446789999999999999999875211112221   11222 3344577999999952                33566


Q ss_pred             hcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCc-EEEEEeccCCCCc-HHHHHHHHHHHHHHHhccCCCCCcEEecc
Q 029158           99 STRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKTDTVFP-IDVARRAMQIEESLKANNSLVQPVMMVSS  176 (198)
Q Consensus        99 ~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa  176 (198)
                      .-...+|+|++++|++.|+.....+++..+..++.| ++-|+|+.|+... ..+......++-+++...-.+..+|++|.
T Consensus       129 DvaKIaDLVlLlIdgnfGfEMETmEFLnil~~HGmPrvlgV~ThlDlfk~~stLr~~KKrlkhRfWtEiyqGaKlFylsg  208 (1077)
T COG5192         129 DVAKIADLVLLLIDGNFGFEMETMEFLNILISHGMPRVLGVVTHLDLFKNPSTLRSIKKRLKHRFWTEIYQGAKLFYLSG  208 (1077)
T ss_pred             hHHHhhheeEEEeccccCceehHHHHHHHHhhcCCCceEEEEeecccccChHHHHHHHHHHhhhHHHHHcCCceEEEecc
Confidence            666679999999999999999999999999999987 5669999999854 46777777777777776667899999997


Q ss_pred             CC
Q 029158          177 KS  178 (198)
Q Consensus       177 ~~  178 (198)
                      ..
T Consensus       209 V~  210 (1077)
T COG5192         209 VE  210 (1077)
T ss_pred             cc
Confidence            64

>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.48  E-value=2.2e-13  Score=100.89  Aligned_cols=162  Identities=19%  Similarity=0.243  Sum_probs=121.2

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCccceee-------------------------cCCCCceeEE--------------
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRT-------------------------SDKPGLTQTI--------------   60 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~-------------------------~~~~~~t~~~--------------   60 (198)
                      ...+|.-+|..-.||||++.++.+...+.+-                         .++|.+-+..              
T Consensus        37 ATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~~~g  116 (466)
T KOG0466|consen   37 ATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCDRPG  116 (466)
T ss_pred             eeeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCcccCC
Confidence            4568899999999999999999875211100                         0011100000              


Q ss_pred             --EEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCC-CCcCcHHHHHHHHhhC-CcEE
Q 029158           61 --NFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG-VKPRDHELISLMERSQ-TKYQ  136 (198)
Q Consensus        61 --~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~-~~~~~~~~~~~~~~~~-~p~i  136 (198)
                        ..+..-..+.|+|+||+             +-++..++.+....|++++++-+++. ++.+..+.+..++-.. +.++
T Consensus       117 ~~~~~klvRHVSfVDCPGH-------------DiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM~Lkhii  183 (466)
T KOG0466|consen  117 CEGKMKLVRHVSFVDCPGH-------------DILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIMKLKHII  183 (466)
T ss_pred             CCCceEEEEEEEeccCCch-------------HHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHhhhceEE
Confidence              00111236889999997             66788888888889999999988774 3455666666666554 5788


Q ss_pred             EEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEeccCCCCChHHHHHHHHHhhc
Q 029158          137 VVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR  194 (198)
Q Consensus       137 iv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~~~gi~~l~~~i~~~~~  194 (198)
                      ++-||+|+...+...+..++++.........+.|++++||.-+.|++.+.++|....+
T Consensus       184 ilQNKiDli~e~~A~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIP  241 (466)
T KOG0466|consen  184 ILQNKIDLIKESQALEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIP  241 (466)
T ss_pred             EEechhhhhhHHHHHHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCC
Confidence            9999999999888888889999988877777899999999999999999999998765

>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]

Probab=99.48  E-value=1.1e-13  Score=97.58  Aligned_cols=156  Identities=14%  Similarity=0.049  Sum_probs=98.7

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCce-----eEEEEE-EeCCceEEEeCCCCccccchhHHHHHHHHH
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT-----QTINFF-KLGTKLCLVDLPGYGFAYAKEEVKDAWEEL   93 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t-----~~~~~~-~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~   93 (198)
                      ...++++||..++|||+|+..+..+   .....+.+|.     .+..+. ....++.+|||.|..+-          +. 
T Consensus         3 ~~~K~VvVGDga~GKT~ll~~~t~~---~fp~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqedY----------Dr-   68 (198)
T KOG0393|consen    3 RRIKCVVVGDGAVGKTCLLISYTTN---AFPEEYVPTVFDNYSANVTVDDGKPVELGLWDTAGQEDY----------DR-   68 (198)
T ss_pred             eeeEEEEECCCCcCceEEEEEeccC---cCcccccCeEEccceEEEEecCCCEEEEeeeecCCCccc----------cc-
Confidence            4578999999999999999998876   3344443332     223443 44567899999996442          11 


Q ss_pred             HHHHHhcccccceEEEEEeCCCC--CCcCcHHHHHHHHhh--CCcEEEEEeccCCCCcHHH-HHHH---------HHHHH
Q 029158           94 VKEYVSTRVSLKRVCLLIDTKWG--VKPRDHELISLMERS--QTKYQVVLTKTDTVFPIDV-ARRA---------MQIEE  159 (198)
Q Consensus        94 ~~~~~~~~~~~d~vi~v~d~~~~--~~~~~~~~~~~~~~~--~~p~iiv~nK~Dl~~~~~~-~~~~---------~~~~~  159 (198)
                      ++.+  .-..+|.++++++..+.  +.....+|+..+..+  +.|+|+|++|.||.+.... ++..         ++-++
T Consensus        69 lRpl--sY~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~cp~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~  146 (198)
T KOG0393|consen   69 LRPL--SYPQTDVFLLCFSVVSPESFENVKSKWIPEIKHHCPNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLE  146 (198)
T ss_pred             cccc--CCCCCCEEEEEEEcCChhhHHHHHhhhhHHHHhhCCCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHH
Confidence            2211  12336787777766553  333345566666655  6999999999999854311 1111         11111


Q ss_pred             HHHhccCCCCCcEEeccCCCCChHHHHHHHHHhh
Q 029158          160 SLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA  193 (198)
Q Consensus       160 ~~~~~~~~~~~v~~~Sa~~~~gi~~l~~~i~~~~  193 (198)
                      ...  ......++++||++..|++++|+.....+
T Consensus       147 lA~--~iga~~y~EcSa~tq~~v~~vF~~a~~~~  178 (198)
T KOG0393|consen  147 LAK--EIGAVKYLECSALTQKGVKEVFDEAIRAA  178 (198)
T ss_pred             HHH--HhCcceeeeehhhhhCCcHHHHHHHHHHH
Confidence            111  11136799999999999999999877654

>TIGR00101 ureG urease accessory protein UreG

Probab=99.47  E-value=7.6e-13  Score=95.24  Aligned_cols=82  Identities=15%  Similarity=0.099  Sum_probs=54.4

Q ss_pred             cceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCc--HHHHHHHHHHHHHHHhccCCCCCcEEeccCCCCC
Q 029158          104 LKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFP--IDVARRAMQIEESLKANNSLVQPVMMVSSKSGAG  181 (198)
Q Consensus       104 ~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~~~g  181 (198)
                      +|.++.|+|+.++..... ....++   ...-++++||+|+.+.  .+.+...+.+++.     ....+++++||++|+|
T Consensus       113 ~~~~i~vvD~~~~~~~~~-~~~~qi---~~ad~~~~~k~d~~~~~~~~~~~~~~~~~~~-----~~~~~i~~~Sa~~g~g  183 (199)
T TIGR00101       113 ADLTIFVIDVAAGDKIPR-KGGPGI---TRSDLLVINKIDLAPMVGADLGVMERDAKKM-----RGEKPFIFTNLKTKEG  183 (199)
T ss_pred             hCcEEEEEEcchhhhhhh-hhHhHh---hhccEEEEEhhhccccccccHHHHHHHHHHh-----CCCCCEEEEECCCCCC
Confidence            467899999976433211 111112   2334999999999853  2333333333333     2368999999999999


Q ss_pred             hHHHHHHHHHhhc
Q 029158          182 IRSLRTVLSKIAR  194 (198)
Q Consensus       182 i~~l~~~i~~~~~  194 (198)
                      +++++++|.+.+.
T Consensus       184 i~el~~~i~~~~~  196 (199)
T TIGR00101       184 LDTVIDWIEHYAL  196 (199)
T ss_pred             HHHHHHHHHhhcC
Confidence            9999999998764

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.47  E-value=1.1e-12  Score=99.46  Aligned_cols=156  Identities=19%  Similarity=0.227  Sum_probs=97.4

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCccc-eeecCCCCceeEEEEEEe-------------C------------------
Q 029158           19 PDLPEIAFAGRSNVGKSSMLNALTRQWGV-VRTSDKPGLTQTINFFKL-------------G------------------   66 (198)
Q Consensus        19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~~-~~~~~~~~~t~~~~~~~~-------------~------------------   66 (198)
                      ...|.|+++|+.+.||||+|+.|+.++.- ..++++|.|..-..+...             +                  
T Consensus        56 d~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnR  135 (532)
T KOG1954|consen   56 DAKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNR  135 (532)
T ss_pred             ccCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHH
Confidence            46789999999999999999999988421 123333332222111110             0                  


Q ss_pred             -----------CceEEEeCCCCccccchhHHHH-HHHHHHHHHHhcccccceEEEEEeCCC-CCCcCcHHHHHHHHhhCC
Q 029158           67 -----------TKLCLVDLPGYGFAYAKEEVKD-AWEELVKEYVSTRVSLKRVCLLIDTKW-GVKPRDHELISLMERSQT  133 (198)
Q Consensus        67 -----------~~~~iiDtpG~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~vi~v~d~~~-~~~~~~~~~~~~~~~~~~  133 (198)
                                 ..+.++||||+-+...+.-.+. -+...+.+|...   +|.|++++|+-. +.+.+..++++.+....-
T Consensus       136 f~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR---~D~IiLlfD~hKLDIsdEf~~vi~aLkG~Ed  212 (532)
T KOG1954|consen  136 FMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAER---VDRIILLFDAHKLDISDEFKRVIDALKGHED  212 (532)
T ss_pred             HHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHh---ccEEEEEechhhccccHHHHHHHHHhhCCcc
Confidence                       1699999999866533221111 112233333333   999999999865 455666788999988878


Q ss_pred             cEEEEEeccCCCCcHHHHHHHHHH-HHHHHhccCCCCCcEEeccC
Q 029158          134 KYQVVLTKTDTVFPIDVARRAMQI-EESLKANNSLVQPVMMVSSK  177 (198)
Q Consensus       134 p~iiv~nK~Dl~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~Sa~  177 (198)
                      .+-+|+||+|.++.+++....-.+ +..-.-..-+.++-+++-+.
T Consensus       213 kiRVVLNKADqVdtqqLmRVyGALmWslgkv~nTpev~rvYigSf  257 (532)
T KOG1954|consen  213 KIRVVLNKADQVDTQQLMRVYGALMWSLGKVMNTPEVSRVYIGSF  257 (532)
T ss_pred             eeEEEeccccccCHHHHHHHHHHHHHhhhhhcCCCcceeEEeecc
Confidence            889999999999988876655333 33333233333344444443

>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]

Probab=99.47  E-value=4.3e-13  Score=111.48  Aligned_cols=131  Identities=18%  Similarity=0.266  Sum_probs=95.4

Q ss_pred             CCCCCeEEEEcCCCCCHHHHHHHHhcCcc-ce---ee------------cCCCCceeE---EEEEEeC-CceEEEeCCCC
Q 029158           18 APDLPEIAFAGRSNVGKSSMLNALTRQWG-VV---RT------------SDKPGLTQT---INFFKLG-TKLCLVDLPGY   77 (198)
Q Consensus        18 ~~~~~~v~~vG~~~~GKSsli~~l~~~~~-~~---~~------------~~~~~~t~~---~~~~~~~-~~~~iiDtpG~   77 (198)
                      ..+.++|.++|+..+|||||..+|+.... +.   .+            ....+.|..   ..+...+ ..+.+|||||+
T Consensus         7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGH   86 (697)
T COG0480           7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGH   86 (697)
T ss_pred             cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCc
Confidence            56788999999999999999999884310 01   11            111223332   2355554 89999999998


Q ss_pred             ccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHH
Q 029158           78 GFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQI  157 (198)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~  157 (198)
                      -             ++..+..+....+|++++|+|+.+|...+...+++++.+.++|.++++||+|....+ .....+.+
T Consensus        87 V-------------DFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~~~vp~i~fiNKmDR~~a~-~~~~~~~l  152 (697)
T COG0480          87 V-------------DFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADKYGVPRILFVNKMDRLGAD-FYLVVEQL  152 (697)
T ss_pred             c-------------ccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhhcCCCeEEEEECccccccC-hhhhHHHH
Confidence            3             334455555566999999999999999999999999999999999999999998643 33444555


Q ss_pred             HHHHH
Q 029158          158 EESLK  162 (198)
Q Consensus       158 ~~~~~  162 (198)
                      +..+.
T Consensus       153 ~~~l~  157 (697)
T COG0480         153 KERLG  157 (697)
T ss_pred             HHHhC
Confidence            55544

>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]

Probab=99.47  E-value=2.7e-13  Score=94.54  Aligned_cols=164  Identities=16%  Similarity=0.173  Sum_probs=91.9

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC----ccceeecCCCCceeEEE-EEE-eCCceEEEeCC-CCccccchhHHHHHHHHH
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQ----WGVVRTSDKPGLTQTIN-FFK-LGTKLCLVDLP-GYGFAYAKEEVKDAWEEL   93 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~----~~~~~~~~~~~~t~~~~-~~~-~~~~~~iiDtp-G~~~~~~~~~~~~~~~~~   93 (198)
                      ..+|.+.|++|||||+|+.+++..    ++++.+.+...|..+.. +.. .+.++.-+.|. |...  ..+.....++++
T Consensus        13 ~~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~Di~t~~Da~~l~~~~g~~i~~v~TG~~CH~--da~m~~~ai~~l   90 (202)
T COG0378          13 MLRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGDIYTKEDADRLRKLPGEPIIGVETGKGCHL--DASMNLEAIEEL   90 (202)
T ss_pred             eEEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEeceeechhhHHHHHhCCCCeeEEeccCCccCC--cHHHHHHHHHHH
Confidence            368999999999999999987753    34444444444433322 122 34556666666 4311  112222333333


Q ss_pred             HHHHHh-------c-c--------cccc-eEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHH
Q 029158           94 VKEYVS-------T-R--------VSLK-RVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQ  156 (198)
Q Consensus        94 ~~~~~~-------~-~--------~~~d-~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~  156 (198)
                      ..++-.       . .        ...| +-++|+|..+|.....+ ....+   -..-++|+||.|+.+.-+.+  .+.
T Consensus        91 ~~~~~~~Dll~iEs~GNL~~~~sp~L~d~~~v~VidvteGe~~P~K-~gP~i---~~aDllVInK~DLa~~v~~d--lev  164 (202)
T COG0378          91 VLDFPDLDLLFIESVGNLVCPFSPDLGDHLRVVVIDVTEGEDIPRK-GGPGI---FKADLLVINKTDLAPYVGAD--LEV  164 (202)
T ss_pred             hhcCCcCCEEEEecCcceecccCcchhhceEEEEEECCCCCCCccc-CCCce---eEeeEEEEehHHhHHHhCcc--HHH
Confidence            332110       0 0        0022 56777787765322211 00000   01348999999998754331  122


Q ss_pred             HHHHHHhccCCCCCcEEeccCCCCChHHHHHHHHHhh
Q 029158          157 IEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA  193 (198)
Q Consensus       157 ~~~~~~~~~~~~~~v~~~Sa~~~~gi~~l~~~i~~~~  193 (198)
                      +.+.... .++..|++++|+++|+|++++++|+...+
T Consensus       165 m~~da~~-~np~~~ii~~n~ktg~G~~~~~~~i~~~~  200 (202)
T COG0378         165 MARDAKE-VNPEAPIIFTNLKTGEGLDEWLRFIEPQA  200 (202)
T ss_pred             HHHHHHH-hCCCCCEEEEeCCCCcCHHHHHHHHHhhc
Confidence            2222222 24579999999999999999999998764

>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]

Probab=99.45  E-value=8.3e-14  Score=100.85  Aligned_cols=159  Identities=19%  Similarity=0.224  Sum_probs=111.9

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeE---EEEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHH
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT---INFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE   96 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~---~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~   96 (198)
                      ...++.++|.|++||||++..|.+..  .++..+.++|-.   ......+..+++.|.||+.+.....      ...-++
T Consensus        58 g~a~vg~vgFPSvGksTl~~~l~g~~--s~vasyefttl~~vpG~~~y~gaKiqlldlpgiiegakdg------kgrg~q  129 (358)
T KOG1487|consen   58 GDARVGFVGFPSVGKSTLLSKLTGTF--SEVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDG------KGRGKQ  129 (358)
T ss_pred             cceeeeEEecCccchhhhhhhhcCCC--CccccccceeEEEecceEeccccceeeecCcchhcccccC------CCCccE
Confidence            34589999999999999999999974  566667666533   2344668899999999987754332      122345


Q ss_pred             HHhcccccceEEEEEeCCCCCCcCc--------------------------------------HH---------------
Q 029158           97 YVSTRVSLKRVCLLIDTKWGVKPRD--------------------------------------HE---------------  123 (198)
Q Consensus        97 ~~~~~~~~d~vi~v~d~~~~~~~~~--------------------------------------~~---------------  123 (198)
                      .+...+.|+++++|+|...++....                                      .+               
T Consensus       130 viavartcnli~~vld~~kp~~hk~~ie~eleg~girlnk~pp~i~~kkKdkgGInlt~~~LdlD~~rsil~eyR~hsAd  209 (358)
T KOG1487|consen  130 VIAVARTCNLIFIVLDVLKPLSHKKIIEKELEGFGIRLNKQPPNIGTKKKDKGGINLTGTHLDLDLQRSILSEYRIHSAD  209 (358)
T ss_pred             EEEEeecccEEEEEeeccCcccHHHHHHHhhhcceeeccCCCCCccccccccCceeeecchhhHHHHHHHHHHhhhcchh
Confidence            6666777999999999865322110                                      01               


Q ss_pred             -----------HHHHHHhh--CCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEeccCCCCChHHHHHHHH
Q 029158          124 -----------LISLMERS--QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLS  190 (198)
Q Consensus       124 -----------~~~~~~~~--~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~~~gi~~l~~~i~  190 (198)
                                 ++..++..  -+|.+.++||+|-.+-++++-            .......+++||.+++|++++++.+.
T Consensus       210 i~Lr~DaT~DdLIdvVegnr~yVp~iyvLNkIdsISiEELdi------------i~~iphavpISA~~~wn~d~lL~~mw  277 (358)
T KOG1487|consen  210 IALRFDATADDLIDVVEGNRIYVPCIYVLNKIDSISIEELDI------------IYTIPHAVPISAHTGWNFDKLLEKMW  277 (358)
T ss_pred             eeeecCcchhhhhhhhccCceeeeeeeeecccceeeeeccce------------eeeccceeecccccccchHHHHHHHh
Confidence                       11112211  258899999999887655421            11136789999999999999999999


Q ss_pred             HhhccccC
Q 029158          191 KIARFAKV  198 (198)
Q Consensus       191 ~~~~~~r~  198 (198)
                      +.+...|+
T Consensus       278 eyL~Lvri  285 (358)
T KOG1487|consen  278 EYLKLVRI  285 (358)
T ss_pred             hcchheEE
Confidence            99888764

>cd01900 YchF YchF subfamily

Probab=99.44  E-value=4.4e-13  Score=100.37  Aligned_cols=84  Identities=25%  Similarity=0.288  Sum_probs=62.8

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEE--e-C-----------------CceEEEeCCCCccccch
Q 029158           24 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK--L-G-----------------TKLCLVDLPGYGFAYAK   83 (198)
Q Consensus        24 v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~--~-~-----------------~~~~iiDtpG~~~~~~~   83 (198)
                      |+++|.|++|||||+|+|++..  ..++++++||.+.....  . +                 .++.++|+||+......
T Consensus         1 igivG~PN~GKSTLfn~Lt~~~--~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~   78 (274)
T cd01900           1 IGIVGLPNVGKSTLFNALTKAG--AEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK   78 (274)
T ss_pred             CeEeCCCCCcHHHHHHHHhCCC--CccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCch
Confidence            5799999999999999999984  37888999997644211  1 1                 24999999998654322


Q ss_pred             hHHHHHHHHHHHHHHhcccccceEEEEEeCCC
Q 029158           84 EEVKDAWEELVKEYVSTRVSLKRVCLLIDTKW  115 (198)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~  115 (198)
                      .      ..+..+++...+.+|++++|+|+..
T Consensus        79 ~------~glg~~fL~~i~~~D~li~VV~~f~  104 (274)
T cd01900          79 G------EGLGNKFLSHIREVDAIAHVVRCFE  104 (274)
T ss_pred             h------hHHHHHHHHHHHhCCEEEEEEeCcC
Confidence            2      3344567777777999999999854

YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=99.39  E-value=6.9e-13  Score=103.70  Aligned_cols=136  Identities=18%  Similarity=0.240  Sum_probs=91.3

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCc----cceeecCCCCceeEEEEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHHH
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQW----GVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY   97 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~~----~~~~~~~~~~~t~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~   97 (198)
                      .+++++|.+|+|||||+|+|++..    .....+..++||........+..+.++||||+...   +.....+......+
T Consensus       155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~~~~~~l~DtPG~~~~---~~~~~~l~~~~l~~  231 (360)
T TIGR03597       155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPLDDGHSLYDTPGIINS---HQMAHYLDKKDLKY  231 (360)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEeCCCCEEEECCCCCCh---hHhhhhcCHHHHhh
Confidence            479999999999999999999853    23567889999999887777777899999998653   11111111111123


Q ss_pred             HhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHH
Q 029158           98 VSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEES  160 (198)
Q Consensus        98 ~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~  160 (198)
                      +........+.|.++..+.+.......++.+...+..+.+.+++.+.......++..+.+++.
T Consensus       232 ~~~~~~i~~~~~~l~~~q~~~~ggl~~~d~~~~~~~~~~~~~~~~~~~h~t~~~~a~~~~~~~  294 (360)
T TIGR03597       232 ITPKKEIKPKTYQLNPNQTLFLGGLARFDYLKGEKTSFTFYVSNELNIHRTKLENADELYNKH  294 (360)
T ss_pred             cCCCCccCceEEEeCCCCEEEEceEEEEEEecCCceEEEEEccCCceeEeechhhhHHHHHhh
Confidence            333445677889999887555555444555544456678888888877665554444444443

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>cd01858 NGP_1 NGP-1

Probab=99.38  E-value=2.1e-12  Score=89.78  Aligned_cols=57  Identities=33%  Similarity=0.588  Sum_probs=50.0

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEeCCceEEEeCCCC
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGY   77 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~iiDtpG~   77 (198)
                      ...+|+++|.||+|||||+|+|.+. .....++.+++|+...+...+..+.++||||+
T Consensus       101 ~~~~v~~~G~~nvGKStliN~l~~~-~~~~~~~~~g~T~~~~~~~~~~~~~liDtPGi  157 (157)
T cd01858         101 KQISVGFIGYPNVGKSSIINTLRSK-KVCKVAPIPGETKVWQYITLMKRIYLIDCPGV  157 (157)
T ss_pred             cceEEEEEeCCCCChHHHHHHHhcC-CceeeCCCCCeeEeEEEEEcCCCEEEEECcCC
Confidence            3467899999999999999999997 56788999999998887777777999999995

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>cd01859 MJ1464 MJ1464

Probab=99.37  E-value=1.2e-11  Score=85.89  Aligned_cols=95  Identities=25%  Similarity=0.333  Sum_probs=67.7

Q ss_pred             HHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCC
Q 029158           90 WEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQ  169 (198)
Q Consensus        90 ~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  169 (198)
                      |..+.+..+..   +|++++|+|++.+....+.++...+...+.|+++|+||+|+.+........ .+.   .   ..+.
T Consensus         2 ~~~~~~~i~~~---aD~vl~V~D~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~-~~~---~---~~~~   71 (156)
T cd01859           2 WKRLVRRIIKE---SDVVLEVLDARDPELTRSRKLERYVLELGKKLLIVLNKADLVPKEVLEKWK-SIK---E---SEGI   71 (156)
T ss_pred             HHHHHHHHHhh---CCEEEEEeeCCCCcccCCHHHHHHHHhCCCcEEEEEEhHHhCCHHHHHHHH-HHH---H---hCCC
Confidence            34444444443   899999999987666666666666666689999999999997543322211 111   1   1246


Q ss_pred             CcEEeccCCCCChHHHHHHHHHhhc
Q 029158          170 PVMMVSSKSGAGIRSLRTVLSKIAR  194 (198)
Q Consensus       170 ~v~~~Sa~~~~gi~~l~~~i~~~~~  194 (198)
                      +++++||+++.|++++++.+.+.++
T Consensus        72 ~~~~iSa~~~~gi~~L~~~l~~~~~   96 (156)
T cd01859          72 PVVYVSAKERLGTKILRRTIKELAK   96 (156)
T ss_pred             cEEEEEccccccHHHHHHHHHHHHh
Confidence            8999999999999999999988754

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=99.36  E-value=2.7e-12  Score=90.18  Aligned_cols=56  Identities=34%  Similarity=0.555  Sum_probs=50.3

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEeCCceEEEeCCCC
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGY   77 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~iiDtpG~   77 (198)
                      ..+++++|.||+|||||+|+|.+. ....+++.+++|+..+....+.++.++||||+
T Consensus       117 ~~~~~~vG~pnvGKSslin~l~~~-~~~~~~~~pg~T~~~~~~~~~~~~~l~DtPGi  172 (172)
T cd04178         117 SITVGVVGFPNVGKSSLINSLKRS-RACNVGATPGVTKSMQEVHLDKKVKLLDSPGI  172 (172)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHhCc-ccceecCCCCeEcceEEEEeCCCEEEEECcCC
Confidence            468999999999999999999998 56778999999999887777788999999995

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=99.35  E-value=1.3e-11  Score=88.07  Aligned_cols=145  Identities=21%  Similarity=0.202  Sum_probs=98.9

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEe----CCceEEEeCCCCccccchhHHHHHHHHHHH
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL----GTKLCLVDLPGYGFAYAKEEVKDAWEELVK   95 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~----~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~   95 (198)
                      +..+|+++|.+|+||||+=..++.. .++.-...++.|.++...+.    +.-+.+||..|.             +..+.
T Consensus         3 ~~kKvlLMGrsGsGKsSmrsiiF~n-y~a~D~~rlg~tidveHsh~RflGnl~LnlwDcGgq-------------e~fme   68 (295)
T KOG3886|consen    3 MKKKVLLMGRSGSGKSSMRSIIFAN-YIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQ-------------EEFME   68 (295)
T ss_pred             ccceEEEeccCCCCccccchhhhhh-hhhhhhhccCCcceeeehhhhhhhhheeehhccCCc-------------HHHHH
Confidence            5678999999999999998888876 45666777888888876654    356889999995             34444


Q ss_pred             HHHhc-----ccccceEEEEEeCCCCCCcCcHHHHHH----HHhh--CCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhc
Q 029158           96 EYVST-----RVSLKRVCLLIDTKWGVKPRDHELISL----MERS--QTKYQVVLTKTDTVFPIDVARRAMQIEESLKAN  164 (198)
Q Consensus        96 ~~~~~-----~~~~d~vi~v~d~~~~~~~~~~~~~~~----~~~~--~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~  164 (198)
                      .|+..     -...+++++|+|+++.-.+.|.+.++.    +...  ...+...++|+|++.....+...+.-.+.+...
T Consensus        69 n~~~~q~d~iF~nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP~AkiF~l~hKmDLv~~d~r~~if~~r~~~l~~~  148 (295)
T KOG3886|consen   69 NYLSSQEDNIFRNVQVLIYVFDVESREMEKDFHYYQKCLEALLQNSPEAKIFCLLHKMDLVQEDARELIFQRRKEDLRRL  148 (295)
T ss_pred             HHHhhcchhhheeheeeeeeeeccchhhhhhHHHHHHHHHHHHhcCCcceEEEEEeechhcccchHHHHHHHHHHHHHHh
Confidence            55542     134788999999998656666555444    3222  456888999999997665554444444433333


Q ss_pred             cC-CCCCcEEeccCC
Q 029158          165 NS-LVQPVMMVSSKS  178 (198)
Q Consensus       165 ~~-~~~~v~~~Sa~~  178 (198)
                      .. ..+.++++|.-+
T Consensus       149 s~~~~~~~f~TsiwD  163 (295)
T KOG3886|consen  149 SRPLECKCFPTSIWD  163 (295)
T ss_pred             cccccccccccchhh
Confidence            22 235667766544

>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.32  E-value=1.5e-11  Score=90.16  Aligned_cols=171  Identities=19%  Similarity=0.249  Sum_probs=109.6

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCccceeecC--CCC-----ceeEEEEEEeCCceEEEeCCCCccccchhHHH----HH
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSD--KPG-----LTQTINFFKLGTKLCLVDLPGYGFAYAKEEVK----DA   89 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~--~~~-----~t~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~----~~   89 (198)
                      ..+|+++|.+|.|||||+..|++...-...++  .+.     .|.+.+.......++++||.|+|+....+...    +.
T Consensus        42 ~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Syk~iVdy  121 (406)
T KOG3859|consen   42 CFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDSYKPIVDY  121 (406)
T ss_pred             eEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcccccchHHHH
Confidence            57899999999999999999998741111111  111     12223333345678999999999976555421    22


Q ss_pred             HHHHHHHHHh------------cccccceEEEEE-eCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHH
Q 029158           90 WEELVKEYVS------------TRVSLKRVCLLI-DTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQ  156 (198)
Q Consensus        90 ~~~~~~~~~~------------~~~~~d~vi~v~-d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~  156 (198)
                      ++.-...|++            ......+++|.+ +..+++...++-.++.+.. ++.+|.|+-|.|.....++......
T Consensus       122 idaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH~LKslDLvtmk~Lds-kVNIIPvIAKaDtisK~eL~~FK~k  200 (406)
T KOG3859|consen  122 IDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTGHSLKSLDLVTMKKLDS-KVNIIPVIAKADTISKEELKRFKIK  200 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCCcchhHHHHHHHHHHhh-hhhhHHHHHHhhhhhHHHHHHHHHH
Confidence            2222222222            122355666665 5566777777777777775 6899999999999999999988888


Q ss_pred             HHHHHHhccCCCCCcEEeccCCCCChHHHHHHHHHhhccc
Q 029158          157 IEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIARFA  196 (198)
Q Consensus       157 ~~~~~~~~~~~~~~v~~~Sa~~~~gi~~l~~~i~~~~~~~  196 (198)
                      +...+..+.   +.+... ..+.+.+.+.-..+..+++++
T Consensus       201 imsEL~sng---v~IYqf-PtDdetva~~N~~mn~~lPFA  236 (406)
T KOG3859|consen  201 IMSELVSNG---VQIYQF-PTDDETVAKANSEMNHSLPFA  236 (406)
T ss_pred             HHHHHHhcC---ceeeec-cchHHHHHHHHHHhhcCCcee
Confidence            887777553   344332 233455566666666666654

>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.31  E-value=2.2e-11  Score=82.41  Aligned_cols=156  Identities=17%  Similarity=0.223  Sum_probs=95.9

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCce-eEEEEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHHHHh
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT-QTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS   99 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t-~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~   99 (198)
                      .-+++++|-.|+|||||++-|-.. +....-+...+| ....+  -+..++.+|..|+..+      +..|.+....   
T Consensus        20 ~gKllFlGLDNAGKTTLLHMLKdD-rl~qhvPTlHPTSE~l~I--g~m~ftt~DLGGH~qA------rr~wkdyf~~---   87 (193)
T KOG0077|consen   20 FGKLLFLGLDNAGKTTLLHMLKDD-RLGQHVPTLHPTSEELSI--GGMTFTTFDLGGHLQA------RRVWKDYFPQ---   87 (193)
T ss_pred             CceEEEEeecCCchhhHHHHHccc-cccccCCCcCCChHHhee--cCceEEEEccccHHHH------HHHHHHHHhh---
Confidence            347899999999999999998776 455555543333 33333  2567899999997432      3334443333   


Q ss_pred             cccccceEEEEEeCCCCCCcCc-HHHHHHH---H-hhCCcEEEEEeccCCCCcHHHHHHHH--HHHHHHHh--------c
Q 029158          100 TRVSLKRVCLLIDTKWGVKPRD-HELISLM---E-RSQTKYQVVLTKTDTVFPIDVARRAM--QIEESLKA--------N  164 (198)
Q Consensus       100 ~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~---~-~~~~p~iiv~nK~Dl~~~~~~~~~~~--~~~~~~~~--------~  164 (198)
                          +|+++|++|+-+.-...+ +..++.+   + -.++|+++..||+|.+.+...++...  .+......        .
T Consensus        88 ----v~~iv~lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~se~~l~~~l~l~~~t~~~~~v~~~~~  163 (193)
T KOG0077|consen   88 ----VDAIVYLVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAASEDELRFHLGLSNFTTGKGKVNLTDS  163 (193)
T ss_pred             ----hceeEeeeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcccHHHHHHHHHHHHHhcccccccccCC
Confidence                899999999976211111 1112222   1 24799999999999987654333221  11121111        1


Q ss_pred             cCCCCCcEEeccCCCCChHHHHHHHHHh
Q 029158          165 NSLVQPVMMVSSKSGAGIRSLRTVLSKI  192 (198)
Q Consensus       165 ~~~~~~v~~~Sa~~~~gi~~l~~~i~~~  192 (198)
                      ......+|.+|...+.|.-+-+.|+...
T Consensus       164 ~~rp~evfmcsi~~~~gy~e~fkwl~qy  191 (193)
T KOG0077|consen  164 NVRPLEVFMCSIVRKMGYGEGFKWLSQY  191 (193)
T ss_pred             CCCeEEEEEEEEEccCccceeeeehhhh
Confidence            1112457889998888877777776543

>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=99.29  E-value=3.4e-11  Score=91.75  Aligned_cols=159  Identities=26%  Similarity=0.379  Sum_probs=107.6

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCc-----cceeec-------CCCCceeEEE-----EEEe------------------
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQW-----GVVRTS-------DKPGLTQTIN-----FFKL------------------   65 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~~-----~~~~~~-------~~~~~t~~~~-----~~~~------------------   65 (198)
                      ..+++++|...+|||||+..|...+     ..+..+       -..+-|..+.     |...                  
T Consensus       167 evRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e~  246 (591)
T KOG1143|consen  167 EVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVEK  246 (591)
T ss_pred             EEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHhh
Confidence            4689999999999999999888542     001100       0111111110     0000                  


Q ss_pred             -CCceEEEeCCCCccccchhHHHHHHHHHHHHHHhcc--cccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEecc
Q 029158           66 -GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTR--VSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKT  142 (198)
Q Consensus        66 -~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~--~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~  142 (198)
                       ..-++|+|.+|+.             .+....+.++  -..+.+++|+.+..+..-...+.+..+...++|+.++++|+
T Consensus       247 SSKlvTfiDLAGh~-------------kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tTrEHLgl~~AL~iPfFvlvtK~  313 (591)
T KOG1143|consen  247 SSKLVTFIDLAGHA-------------KYQKTTIHGLTGYTPHFACLVVSADRGITWTTREHLGLIAALNIPFFVLVTKM  313 (591)
T ss_pred             hcceEEEeecccch-------------hhheeeeeecccCCCceEEEEEEcCCCCccccHHHHHHHHHhCCCeEEEEEee
Confidence             1248999999962             2222222222  23788999999999999999999999999999999999999


Q ss_pred             CCCCcHHHHHHHHHHHHHHH-----------------------hccCCCCCcEEeccCCCCChHHHHHHHHHh
Q 029158          143 DTVFPIDVARRAMQIEESLK-----------------------ANNSLVQPVMMVSSKSGAGIRSLRTVLSKI  192 (198)
Q Consensus       143 Dl~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~v~~~Sa~~~~gi~~l~~~i~~~  192 (198)
                      |+.+...+++...++...+.                       .......|+|.+|+.+|+|++-+..++...
T Consensus       314 Dl~~~~~~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~~fLn~L  386 (591)
T KOG1143|consen  314 DLVDRQGLKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLRTFLNCL  386 (591)
T ss_pred             ccccchhHHHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHHHHHhhc
Confidence            99998666554444443332                       223335899999999999999887776654

>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]

Probab=99.28  E-value=1.6e-10  Score=87.07  Aligned_cols=146  Identities=20%  Similarity=0.258  Sum_probs=107.5

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCc--------------cceeecCCCCceeEE---EEEEeCCceEEEeCCCCcccc
Q 029158           19 PDLPEIAFAGRSNVGKSSMLNALTRQW--------------GVVRTSDKPGLTQTI---NFFKLGTKLCLVDLPGYGFAY   81 (198)
Q Consensus        19 ~~~~~v~~vG~~~~GKSsli~~l~~~~--------------~~~~~~~~~~~t~~~---~~~~~~~~~~iiDtpG~~~~~   81 (198)
                      ....+|.-+|....|||||-.++..-.              +.+......+.|...   .+......+.=+|+||+    
T Consensus        52 KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGH----  127 (449)
T KOG0460|consen   52 KPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGH----  127 (449)
T ss_pred             CCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCch----
Confidence            345678999999999999998877420              011112223455443   23333567888999998    


Q ss_pred             chhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCc-EEEEEeccCCC-CcHHHHHHHHHHHH
Q 029158           82 AKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKTDTV-FPIDVARRAMQIEE  159 (198)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~-~~~~~~~~~~~~~~  159 (198)
                               .+++..++.+..+.|+.|+|+.+.+|...+.++.+-..+.-+++ +++.+||.|++ +++.++-...++.+
T Consensus       128 ---------ADYIKNMItGaaqMDGaILVVaatDG~MPQTrEHlLLArQVGV~~ivvfiNKvD~V~d~e~leLVEmE~RE  198 (449)
T KOG0460|consen  128 ---------ADYIKNMITGAAQMDGAILVVAATDGPMPQTREHLLLARQVGVKHIVVFINKVDLVDDPEMLELVEMEIRE  198 (449)
T ss_pred             ---------HHHHHHhhcCccccCceEEEEEcCCCCCcchHHHHHHHHHcCCceEEEEEecccccCCHHHHHHHHHHHHH
Confidence                     67788999999999999999999999999999988877777755 67789999999 55555656667777


Q ss_pred             HHHhcc--CCCCCcEEeccC
Q 029158          160 SLKANN--SLVQPVMMVSSK  177 (198)
Q Consensus       160 ~~~~~~--~~~~~v~~~Sa~  177 (198)
                      .+..+.  +...|++.-||.
T Consensus       199 lLse~gf~Gd~~PvI~GSAL  218 (449)
T KOG0460|consen  199 LLSEFGFDGDNTPVIRGSAL  218 (449)
T ss_pred             HHHHcCCCCCCCCeeecchh
Confidence            776554  345889988874

>cd01858 NGP_1 NGP-1

Probab=99.25  E-value=3.8e-11  Score=83.46  Aligned_cols=88  Identities=18%  Similarity=0.142  Sum_probs=64.1

Q ss_pred             ccccceEEEEEeCCCCCCcCcHHHHHHHHhh--CCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEeccCC
Q 029158          101 RVSLKRVCLLIDTKWGVKPRDHELISLMERS--QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKS  178 (198)
Q Consensus       101 ~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~--~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~  178 (198)
                      ...+|++++|+|++.+....+..+.+.+...  ++|+++|+||+|+.+.+........+.+.    .  ...++++||+.
T Consensus         6 l~~aD~il~VvD~~~p~~~~~~~i~~~l~~~~~~~p~ilVlNKiDl~~~~~~~~~~~~~~~~----~--~~~~~~iSa~~   79 (157)
T cd01858           6 IDSSDVVIQVLDARDPMGTRCKHVEEYLKKEKPHKHLIFVLNKCDLVPTWVTARWVKILSKE----Y--PTIAFHASINN   79 (157)
T ss_pred             hhhCCEEEEEEECCCCccccCHHHHHHHHhccCCCCEEEEEEchhcCCHHHHHHHHHHHhcC----C--cEEEEEeeccc
Confidence            3449999999999987666677777766543  48999999999998655433333333221    1  12258899999


Q ss_pred             CCChHHHHHHHHHhhc
Q 029158          179 GAGIRSLRTVLSKIAR  194 (198)
Q Consensus       179 ~~gi~~l~~~i~~~~~  194 (198)
                      +.|++++.+++.+.+.
T Consensus        80 ~~~~~~L~~~l~~~~~   95 (157)
T cd01858          80 PFGKGSLIQLLRQFSK   95 (157)
T ss_pred             cccHHHHHHHHHHHHh
Confidence            9999999999987653

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=99.24  E-value=3.5e-11  Score=82.11  Aligned_cols=54  Identities=39%  Similarity=0.566  Sum_probs=46.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEeCCceEEEeCCCC
Q 029158           23 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGY   77 (198)
Q Consensus        23 ~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~iiDtpG~   77 (198)
                      +++++|.+|+|||||+|+|++. ........+++|+.......+..+.++||||+
T Consensus        85 ~~~~~G~~~vGKstlin~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~  138 (141)
T cd01857          85 TIGLVGYPNVGKSSLINALVGK-KKVSVSATPGKTKHFQTIFLTPTITLCDCPGL  138 (141)
T ss_pred             EEEEECCCCCCHHHHHHHHhCC-CceeeCCCCCcccceEEEEeCCCEEEEECCCc
Confidence            8999999999999999999988 44567777888887776666678999999997

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]

Probab=99.23  E-value=3.7e-11  Score=97.26  Aligned_cols=114  Identities=18%  Similarity=0.273  Sum_probs=81.9

Q ss_pred             CCCCCeEEEEcCCCCCHHHHHHHHhcCccceeec-C---------------CCCceeE---EEEEE-----eCCceEEEe
Q 029158           18 APDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTS-D---------------KPGLTQT---INFFK-----LGTKLCLVD   73 (198)
Q Consensus        18 ~~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~-~---------------~~~~t~~---~~~~~-----~~~~~~iiD   73 (198)
                      +.....|+++|+-.+|||+|+..|..+.. .... +               ..+++..   .+..-     ..+-+.++|
T Consensus       125 p~~irnV~l~GhLhhGKT~l~D~Lv~~tH-p~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilD  203 (971)
T KOG0468|consen  125 PERIRNVGLVGHLHHGKTALMDLLVEQTH-PDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILD  203 (971)
T ss_pred             cceEEEEEEeeccccChhHHHHhhceecc-ccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeec
Confidence            34567899999999999999999987731 1110 0               1111111   11111     124589999


Q ss_pred             CCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCC
Q 029158           74 LPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV  145 (198)
Q Consensus        74 tpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~  145 (198)
                      |||+-             ++..+.......+|++++++|+.+|+.-+...+++..-..+.|+++|+||+|+.
T Consensus       204 TPGHV-------------nF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~ikhaiq~~~~i~vviNKiDRL  262 (971)
T KOG0468|consen  204 TPGHV-------------NFSDETTASLRLSDGVVLVVDVAEGVMLNTERIIKHAIQNRLPIVVVINKVDRL  262 (971)
T ss_pred             CCCcc-------------cchHHHHHHhhhcceEEEEEEcccCceeeHHHHHHHHHhccCcEEEEEehhHHH
Confidence            99973             334455555556999999999999999999999988888899999999999974

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=99.22  E-value=4.3e-11  Score=82.98  Aligned_cols=58  Identities=34%  Similarity=0.487  Sum_probs=49.7

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEeCCceEEEeCCCC
Q 029158           19 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGY   77 (198)
Q Consensus        19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~iiDtpG~   77 (198)
                      ....+++++|.+|+|||||+|.|.+. .....+..+++|........+..+.++||||+
T Consensus        98 ~~~~~~~~~G~~~~GKstlin~l~~~-~~~~~~~~~~~t~~~~~~~~~~~~~liDtPG~  155 (155)
T cd01849          98 KKSITVGVIGYPNVGKSSVINALLNK-LKLKVGNVPGTTTSQQEVKLDNKIKLLDTPGI  155 (155)
T ss_pred             ccCcEEEEEccCCCCHHHHHHHHHcc-ccccccCCCCcccceEEEEecCCEEEEECCCC
Confidence            35678999999999999999999997 44557778899998887777788999999995

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]

Probab=99.21  E-value=2.4e-10  Score=92.85  Aligned_cols=102  Identities=17%  Similarity=0.181  Sum_probs=63.0

Q ss_pred             CceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCC
Q 029158           67 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF  146 (198)
Q Consensus        67 ~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~  146 (198)
                      ..+.++|.||++-+.          ....+.......+|+++||+.+.+.+...+.+++..+.+.+..+.++.||+|...
T Consensus       206 nDivliDsPGld~~s----------e~tswid~~cldaDVfVlV~NaEntlt~sek~Ff~~vs~~KpniFIlnnkwDasa  275 (749)
T KOG0448|consen  206 NDIVLIDSPGLDVDS----------ELTSWIDSFCLDADVFVLVVNAENTLTLSEKQFFHKVSEEKPNIFILNNKWDASA  275 (749)
T ss_pred             ccceeccCCCCCCch----------hhhHHHHHHhhcCCeEEEEecCccHhHHHHHHHHHHhhccCCcEEEEechhhhhc
Confidence            378999999986531          1111222223349999999999988888888888888775555677888999986


Q ss_pred             cHH--HHHHHHHHHHHHHh-ccCCCCCcEEeccCC
Q 029158          147 PID--VARRAMQIEESLKA-NNSLVQPVMMVSSKS  178 (198)
Q Consensus       147 ~~~--~~~~~~~~~~~~~~-~~~~~~~v~~~Sa~~  178 (198)
                      .+.  .+.++.++.+.-.. .....-.++++||+.
T Consensus       276 se~ec~e~V~~Qi~eL~v~~~~eA~DrvfFVS~~e  310 (749)
T KOG0448|consen  276 SEPECKEDVLKQIHELSVVTEKEAADRVFFVSAKE  310 (749)
T ss_pred             ccHHHHHHHHHHHHhcCcccHhhhcCeeEEEeccc
Confidence            542  12233332211000 001124589999654

>COG1161 Predicted GTPases [General function prediction only]

Probab=99.21  E-value=4e-11  Score=92.38  Aligned_cols=59  Identities=36%  Similarity=0.564  Sum_probs=53.9

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEeCCceEEEeCCCCcc
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGF   79 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~iiDtpG~~~   79 (198)
                      ...+++++|.|++|||||||+|.+. ....+++.||+|...+.......+.++||||+..
T Consensus       131 ~~~~v~vvG~PNVGKSslIN~L~~k-~~~~~s~~PG~Tk~~q~i~~~~~i~LlDtPGii~  189 (322)
T COG1161         131 RKIRVGVVGYPNVGKSTLINRLLGK-KVAKTSNRPGTTKGIQWIKLDDGIYLLDTPGIIP  189 (322)
T ss_pred             cceEEEEEcCCCCcHHHHHHHHhcc-cceeeCCCCceecceEEEEcCCCeEEecCCCcCC
Confidence            3467999999999999999999998 6789999999999999999989999999999754

>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]

Probab=99.21  E-value=1.9e-10  Score=87.83  Aligned_cols=158  Identities=24%  Similarity=0.272  Sum_probs=108.1

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCc------------cceeecCCCCcee----EE--------------------EEE
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQW------------GVVRTSDKPGLTQ----TI--------------------NFF   63 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~~------------~~~~~~~~~~~t~----~~--------------------~~~   63 (198)
                      ...+|+++|...+|||||+..|...+            +.....-+.+-|.    ++                    .+.
T Consensus       132 ~E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdWv  211 (641)
T KOG0463|consen  132 IEARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDWV  211 (641)
T ss_pred             eeEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCcccce
Confidence            46799999999999999999887542            0000000111111    10                    111


Q ss_pred             Ee----CCceEEEeCCCCccccchhHHHHHHHHHHHHHHh--cccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEE
Q 029158           64 KL----GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS--TRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQV  137 (198)
Q Consensus        64 ~~----~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~--~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~ii  137 (198)
                      ..    ..-++|||++|+             +.++....-  .....|...+++.++.+.--...+.+.......+|+.+
T Consensus       212 kIce~saKviTFIDLAGH-------------EkYLKTTvFGMTGH~PDf~MLMiGaNaGIiGmTKEHLgLALaL~VPVfv  278 (641)
T KOG0463|consen  212 KICEDSAKVITFIDLAGH-------------EKYLKTTVFGMTGHMPDFTMLMIGANAGIIGMTKEHLGLALALHVPVFV  278 (641)
T ss_pred             eeccccceeEEEEeccch-------------hhhhheeeeccccCCCCceEEEecccccceeccHHhhhhhhhhcCcEEE
Confidence            10    124789999996             222222111  22347889999999999988999999988888999999


Q ss_pred             EEeccCCCCcHHHHHHHHHHHHHHHhcc-----------------------CCCCCcEEeccCCCCChHHHHHHHH
Q 029158          138 VLTKTDTVFPIDVARRAMQIEESLKANN-----------------------SLVQPVMMVSSKSGAGIRSLRTVLS  190 (198)
Q Consensus       138 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~v~~~Sa~~~~gi~~l~~~i~  190 (198)
                      |+||+|....+-+++-.+.+.+.+....                       ...+|+|.+|..+|+|++-|..++.
T Consensus       279 VVTKIDMCPANiLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LLkmFLN  354 (641)
T KOG0463|consen  279 VVTKIDMCPANILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLLKMFLN  354 (641)
T ss_pred             EEEeeccCcHHHHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHHHHHHh
Confidence            9999999998877776666666554311                       1148999999999999987776654

>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=99.20  E-value=4.8e-10  Score=84.46  Aligned_cols=88  Identities=23%  Similarity=0.232  Sum_probs=68.1

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEe--------------------CCceEEEeCCCCcc
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL--------------------GTKLCLVDLPGYGF   79 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~--------------------~~~~~iiDtpG~~~   79 (198)
                      ..+++.+||.|++|||||+|+|.+..  ....++|.+|.+......                    ...++++|.+|+..
T Consensus        19 ~~lkiGIVGlPNvGKST~fnalT~~~--a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvk   96 (391)
T KOG1491|consen   19 NNLKIGIVGLPNVGKSTFFNALTKSK--AGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVK   96 (391)
T ss_pred             CcceeeEeeCCCCchHHHHHHHhcCC--CCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeeccccc
Confidence            45689999999999999999999983  448999999988543221                    24799999999865


Q ss_pred             ccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCC
Q 029158           80 AYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKW  115 (198)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~  115 (198)
                      +.+..      ..+-..|+.+.+.+|+++-|+++..
T Consensus        97 GAs~G------~GLGN~FLs~iR~vDaifhVVr~f~  126 (391)
T KOG1491|consen   97 GASAG------EGLGNKFLSHIRHVDAIFHVVRAFE  126 (391)
T ss_pred             CcccC------cCchHHHHHhhhhccceeEEEEecC
Confidence            44333      3445677788888999999988865

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=99.19  E-value=7.7e-11  Score=89.66  Aligned_cols=60  Identities=33%  Similarity=0.594  Sum_probs=52.7

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEeCCceEEEeCCCCccc
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFA   80 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~iiDtpG~~~~   80 (198)
                      ...+++++|.||+|||||+|+|.+. ....+++.+++|+..++...+..+.++||||+...
T Consensus       120 ~~~~~~~~G~pnvGKSsliN~l~~~-~~~~~~~~~g~T~~~~~~~~~~~~~l~DtPGi~~~  179 (287)
T PRK09563        120 RAIRAMIIGIPNVGKSTLINRLAGK-KIAKTGNRPGVTKAQQWIKLGKGLELLDTPGILWP  179 (287)
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcC-CccccCCCCCeEEEEEEEEeCCcEEEEECCCcCCC
Confidence            4568999999999999999999997 56678889999999988887888999999998553

>cd01855 YqeH YqeH

Probab=99.19  E-value=4.9e-11  Score=85.49  Aligned_cols=57  Identities=35%  Similarity=0.475  Sum_probs=46.8

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCcc-------ceeecCCCCceeEEEEEEeCCceEEEeCCCC
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQWG-------VVRTSDKPGLTQTINFFKLGTKLCLVDLPGY   77 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~~~-------~~~~~~~~~~t~~~~~~~~~~~~~iiDtpG~   77 (198)
                      ..+++++|.+|+|||||+|+|++...       ....+..++||++......+.++.++||||+
T Consensus       127 ~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~DtPG~  190 (190)
T cd01855         127 GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGNGKKLYDTPGI  190 (190)
T ss_pred             CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCCCCEEEeCcCC
Confidence            35799999999999999999998531       1345677889999887777668999999995

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>cd01856 YlqF YlqF

Probab=99.19  E-value=3.3e-10  Score=79.80  Aligned_cols=94  Identities=19%  Similarity=0.248  Sum_probs=66.6

Q ss_pred             HHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCC
Q 029158           91 EELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQP  170 (198)
Q Consensus        91 ~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (198)
                      ...+++.......+|++++|+|++.+....+..+...+.  +.|+++|+||+|+.+........+.++.       ...+
T Consensus         7 ~~~~~~~~~~i~~aD~il~v~D~~~~~~~~~~~i~~~~~--~k~~ilVlNK~Dl~~~~~~~~~~~~~~~-------~~~~   77 (171)
T cd01856           7 AKALRQIKEKLKLVDLVIEVRDARIPLSSRNPLLEKILG--NKPRIIVLNKADLADPKKTKKWLKYFES-------KGEK   77 (171)
T ss_pred             HHHHHHHHHHHhhCCEEEEEeeccCccCcCChhhHhHhc--CCCEEEEEehhhcCChHHHHHHHHHHHh-------cCCe
Confidence            445556666667799999999998766655555555442  5899999999999754332222222111       1356


Q ss_pred             cEEeccCCCCChHHHHHHHHHhh
Q 029158          171 VMMVSSKSGAGIRSLRTVLSKIA  193 (198)
Q Consensus       171 v~~~Sa~~~~gi~~l~~~i~~~~  193 (198)
                      ++.+||++++|++++.+.+...+
T Consensus        78 vi~iSa~~~~gi~~L~~~l~~~l  100 (171)
T cd01856          78 VLFVNAKSGKGVKKLLKAAKKLL  100 (171)
T ss_pred             EEEEECCCcccHHHHHHHHHHHH
Confidence            89999999999999999998864

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>cd01855 YqeH YqeH

Probab=99.17  E-value=4.1e-10  Score=80.71  Aligned_cols=90  Identities=17%  Similarity=0.038  Sum_probs=57.7

Q ss_pred             cccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHH-HH-HHhccCCCCCcEEeccCCC
Q 029158          102 VSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIE-ES-LKANNSLVQPVMMVSSKSG  179 (198)
Q Consensus       102 ~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~-~~-~~~~~~~~~~v~~~Sa~~~  179 (198)
                      ..+|++++|+|+++........+.  ....+.|+++|+||+|+............+. .. .........+++++||+++
T Consensus        33 ~~ad~il~VvD~~~~~~~~~~~l~--~~~~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vSA~~~  110 (190)
T cd01855          33 PKKALVVHVVDIFDFPGSLIPRLR--LFGGNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAAAGLGLKPKDVILISAKKG  110 (190)
T ss_pred             cCCcEEEEEEECccCCCccchhHH--HhcCCCcEEEEEEchhcCCCCCCHHHHHHHHHHHHHhhcCCCcccEEEEECCCC
Confidence            448999999999874433333331  2234689999999999975432222112221 11 1111111246899999999


Q ss_pred             CChHHHHHHHHHhh
Q 029158          180 AGIRSLRTVLSKIA  193 (198)
Q Consensus       180 ~gi~~l~~~i~~~~  193 (198)
                      +|+++++++|.+.+
T Consensus       111 ~gi~eL~~~l~~~l  124 (190)
T cd01855         111 WGVEELINAIKKLA  124 (190)
T ss_pred             CCHHHHHHHHHHHh
Confidence            99999999998865

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=99.17  E-value=9.5e-11  Score=88.71  Aligned_cols=59  Identities=32%  Similarity=0.544  Sum_probs=51.2

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEeCCceEEEeCCCCcc
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGF   79 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~iiDtpG~~~   79 (198)
                      ...+++++|.||+|||||+|+|.+. ....+++.+++|+..+....+.++.++||||+..
T Consensus       117 ~~~~~~~vG~~nvGKSslin~l~~~-~~~~~~~~~g~T~~~~~~~~~~~~~l~DtPG~~~  175 (276)
T TIGR03596       117 RPIRAMIVGIPNVGKSTLINRLAGK-KVAKVGNRPGVTKGQQWIKLSDGLELLDTPGILW  175 (276)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCC-CccccCCCCCeecceEEEEeCCCEEEEECCCccc
Confidence            3568999999999999999999987 5567788999999888777777899999999844

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=99.16  E-value=6.6e-10  Score=84.13  Aligned_cols=95  Identities=16%  Similarity=0.202  Sum_probs=69.7

Q ss_pred             HHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCC
Q 029158           91 EELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQP  170 (198)
Q Consensus        91 ~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (198)
                      ....++.......+|++++|+|++.+....+..+.+.+.  +.|+++|+||+|+.+........+.+++       .+.+
T Consensus         9 ~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~~~i~~~l~--~kp~IiVlNK~DL~~~~~~~~~~~~~~~-------~~~~   79 (276)
T TIGR03596         9 AKARREIKEKLKLVDVVIEVLDARIPLSSRNPMIDEIRG--NKPRLIVLNKADLADPAVTKQWLKYFEE-------KGIK   79 (276)
T ss_pred             HHHHHHHHHHHhhCCEEEEEEeCCCCCCCCChhHHHHHC--CCCEEEEEEccccCCHHHHHHHHHHHHH-------cCCe
Confidence            445556666666799999999998877766666666553  6899999999999765433332222221       1357


Q ss_pred             cEEeccCCCCChHHHHHHHHHhhc
Q 029158          171 VMMVSSKSGAGIRSLRTVLSKIAR  194 (198)
Q Consensus       171 v~~~Sa~~~~gi~~l~~~i~~~~~  194 (198)
                      ++++||+++.|+++|.+.+.+.++
T Consensus        80 vi~iSa~~~~gi~~L~~~i~~~~~  103 (276)
T TIGR03596        80 ALAINAKKGKGVKKIIKAAKKLLK  103 (276)
T ss_pred             EEEEECCCcccHHHHHHHHHHHHH
Confidence            899999999999999999887664

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=99.14  E-value=3.9e-10  Score=78.17  Aligned_cols=82  Identities=18%  Similarity=0.233  Sum_probs=59.2

Q ss_pred             ceEEEEEeCCCCCCcCcHHHH-HHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEeccCCCCChH
Q 029158          105 KRVCLLIDTKWGVKPRDHELI-SLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIR  183 (198)
Q Consensus       105 d~vi~v~d~~~~~~~~~~~~~-~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~~~gi~  183 (198)
                      |++++|+|++.+....+..+. ..+...++|+++|+||+|+.+..........+++.      ...+++++||+++.|++
T Consensus         1 Dvvl~VvD~~~p~~~~~~~i~~~~~~~~~~p~IiVlNK~Dl~~~~~~~~~~~~~~~~------~~~~ii~vSa~~~~gi~   74 (155)
T cd01849           1 DVILEVLDARDPLGTRSPDIERVLIKEKGKKLILVLNKADLVPKEVLRKWLAYLRHS------YPTIPFKISATNGQGIE   74 (155)
T ss_pred             CEEEEEEeccCCccccCHHHHHHHHhcCCCCEEEEEechhcCCHHHHHHHHHHHHhh------CCceEEEEeccCCcChh
Confidence            689999999886666555554 45556689999999999997654333222222211      13678999999999999


Q ss_pred             HHHHHHHHh
Q 029158          184 SLRTVLSKI  192 (198)
Q Consensus       184 ~l~~~i~~~  192 (198)
                      ++.+.+.+.
T Consensus        75 ~L~~~i~~~   83 (155)
T cd01849          75 KKESAFTKQ   83 (155)
T ss_pred             hHHHHHHHH
Confidence            999988654

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>cd01856 YlqF YlqF

Probab=99.13  E-value=3.2e-10  Score=79.89  Aligned_cols=57  Identities=33%  Similarity=0.584  Sum_probs=48.4

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEeCCceEEEeCCCC
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGY   77 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~iiDtpG~   77 (198)
                      ..++++++|.+|+|||||+|++.+. .....++.+++|...+....+..+.++||||+
T Consensus       114 ~~~~~~~~G~~~vGKstlin~l~~~-~~~~~~~~~~~T~~~~~~~~~~~~~~iDtpG~  170 (171)
T cd01856         114 RGIRAMVVGIPNVGKSTLINRLRGK-KVAKVGNKPGVTKGIQWIKISPGIYLLDTPGI  170 (171)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCC-CceeecCCCCEEeeeEEEEecCCEEEEECCCC
Confidence            4468999999999999999999987 44567778888988876666678999999996

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]

Probab=99.11  E-value=7.5e-10  Score=90.95  Aligned_cols=112  Identities=21%  Similarity=0.222  Sum_probs=81.2

Q ss_pred             CCCCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCC----------------CCceeE---EEEEEeCCceEEEeCCCC
Q 029158           17 PAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDK----------------PGLTQT---INFFKLGTKLCLVDLPGY   77 (198)
Q Consensus        17 ~~~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~----------------~~~t~~---~~~~~~~~~~~iiDtpG~   77 (198)
                      +..+..++.++-....|||||+.+|....  ..+++.                .+.|-.   +.....+..+.+||+||+
T Consensus         5 ~~~~irn~~~vahvdhgktsladsl~asn--gvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspgh   82 (887)
T KOG0467|consen    5 GSEGIRNICLVAHVDHGKTSLADSLVASN--GVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGH   82 (887)
T ss_pred             CCCceeEEEEEEEecCCccchHHHHHhhc--cEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCc
Confidence            44567889999999999999999998653  122221                112211   112224678999999998


Q ss_pred             ccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccC
Q 029158           78 GFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTD  143 (198)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D  143 (198)
                      .+             +-.+.-.....+|+.++++|+.+|...++..++++.-..+...++|+||+|
T Consensus        83 vd-------------f~sevssas~l~d~alvlvdvvegv~~qt~~vlrq~~~~~~~~~lvinkid  135 (887)
T KOG0467|consen   83 VD-------------FSSEVSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWIEGLKPILVINKID  135 (887)
T ss_pred             cc-------------hhhhhhhhhhhcCCcEEEEeeccccchhHHHHHHHHHHccCceEEEEehhh
Confidence            43             222333344458999999999999999999888877777899999999999

>PRK12288 GTPase RsgA; Reviewed

Probab=99.11  E-value=3.8e-10  Score=87.66  Aligned_cols=56  Identities=30%  Similarity=0.367  Sum_probs=43.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCccceeecCCC-------CceeEEEEEEeCCceEEEeCCCCcc
Q 029158           23 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKP-------GLTQTINFFKLGTKLCLVDLPGYGF   79 (198)
Q Consensus        23 ~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~-------~~t~~~~~~~~~~~~~iiDtpG~~~   79 (198)
                      .++++|.+|+|||||+|+|++.. ...++..+       .||...+++..+....++||||+.+
T Consensus       207 i~~~vG~sgVGKSTLiN~Ll~~~-~~~t~~is~~~~rGrHTT~~~~l~~l~~~~~liDTPGir~  269 (347)
T PRK12288        207 ISIFVGQSGVGKSSLINALLPEA-EILVGDVSDNSGLGQHTTTAARLYHFPHGGDLIDSPGVRE  269 (347)
T ss_pred             CEEEECCCCCCHHHHHHHhcccc-ceeeccccCcCCCCcCceeeEEEEEecCCCEEEECCCCCc
Confidence            58999999999999999999873 33333333       3777788777765667999999865

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=99.10  E-value=5.7e-11  Score=81.78  Aligned_cols=58  Identities=28%  Similarity=0.346  Sum_probs=39.5

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCccce--ee----cCCCCceeEEEEEEeCCceEEEeCCCCcc
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQWGVV--RT----SDKPGLTQTINFFKLGTKLCLVDLPGYGF   79 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~~~~~--~~----~~~~~~t~~~~~~~~~~~~~iiDtpG~~~   79 (198)
                      ..++++|++|+|||||+|+|.......  .+    ..-..||.....+..+....++||||+.+
T Consensus        36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~~g~~iIDTPGf~~   99 (161)
T PF03193_consen   36 KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLPDGGYIIDTPGFRS   99 (161)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEETTSEEEECSHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecCCCcEEEECCCCCc
Confidence            689999999999999999999873111  11    11233666677777778899999999855

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=99.09  E-value=1.7e-09  Score=82.30  Aligned_cols=95  Identities=14%  Similarity=0.209  Sum_probs=69.0

Q ss_pred             HHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCC
Q 029158           91 EELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQP  170 (198)
Q Consensus        91 ~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (198)
                      ....++.......+|++++|+|++.+....+..+.+.+.  +.|+++|+||+|+.+........+.+++    .   +.+
T Consensus        12 ~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~~~l~~~~~--~kp~iiVlNK~DL~~~~~~~~~~~~~~~----~---~~~   82 (287)
T PRK09563         12 AKARREIKENLKLVDVVIEVLDARIPLSSENPMIDKIIG--NKPRLLILNKSDLADPEVTKKWIEYFEE----Q---GIK   82 (287)
T ss_pred             HHHHHHHHHHhhhCCEEEEEEECCCCCCCCChhHHHHhC--CCCEEEEEEchhcCCHHHHHHHHHHHHH----c---CCe
Confidence            444555666666799999999998877766666655554  7899999999999764333333222221    1   357


Q ss_pred             cEEeccCCCCChHHHHHHHHHhhc
Q 029158          171 VMMVSSKSGAGIRSLRTVLSKIAR  194 (198)
Q Consensus       171 v~~~Sa~~~~gi~~l~~~i~~~~~  194 (198)
                      ++++||+++.|++++.+.+.+.++
T Consensus        83 vi~vSa~~~~gi~~L~~~l~~~l~  106 (287)
T PRK09563         83 ALAINAKKGQGVKKILKAAKKLLK  106 (287)
T ss_pred             EEEEECCCcccHHHHHHHHHHHHH
Confidence            899999999999999998887654

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=99.09  E-value=1e-09  Score=74.89  Aligned_cols=78  Identities=15%  Similarity=0.087  Sum_probs=55.4

Q ss_pred             HHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhh--CCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEE
Q 029158           96 EYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERS--QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMM  173 (198)
Q Consensus        96 ~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~--~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  173 (198)
                      +.......+|++++|+|++.+....+..+.+.+...  ++|+++|+||+|+.+........+    .+...   ..++++
T Consensus         4 ~~~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~~~~k~~iivlNK~DL~~~~~~~~~~~----~~~~~---~~~ii~   76 (141)
T cd01857           4 QLWRVVERSDIVVQIVDARNPLLFRPPDLERYVKEVDPRKKNILLLNKADLLTEEQRKAWAE----YFKKE---GIVVVF   76 (141)
T ss_pred             HHHHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhccCCCcEEEEEechhcCCHHHHHHHHH----HHHhc---CCeEEE
Confidence            334444559999999999987777777777777665  799999999999976544332222    22221   357899


Q ss_pred             eccCCCC
Q 029158          174 VSSKSGA  180 (198)
Q Consensus       174 ~Sa~~~~  180 (198)
                      +||+++.
T Consensus        77 iSa~~~~   83 (141)
T cd01857          77 FSALKEN   83 (141)
T ss_pred             EEecCCC
Confidence            9998764

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>COG0523 Putative GTPases (G3E family) [General function prediction only]

Probab=99.08  E-value=3.8e-09  Score=81.04  Aligned_cols=142  Identities=16%  Similarity=0.136  Sum_probs=84.8

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCc---cceeecCCCC--------------------------ceeE---------EEEE
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQW---GVVRTSDKPG--------------------------LTQT---------INFF   63 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~~---~~~~~~~~~~--------------------------~t~~---------~~~~   63 (198)
                      |..++.|.-|||||||+++++.+.   +++..-++.+                          ||..         ..-.
T Consensus         2 pVtvitGFLGsGKTTlL~~lL~~~~g~kiAVIVNEfGEvgID~~~~l~~~~e~~~El~nGCICCT~r~dl~~~~~~L~~~   81 (323)
T COG0523           2 PVTVITGFLGSGKTTLLNHLLANRDGKKIAVIVNEFGEVGIDGGALLSDTGEEVVELTNGCICCTVRDDLLPALERLLRR   81 (323)
T ss_pred             CEEEEeecCCCCHHHHHHHHHhccCCCcEEEEEecCccccccCCCccccCCccEEEeCCceEEEeccchhHHHHHHHHhc
Confidence            567899999999999999999653   2222222111                          1100         0001


Q ss_pred             EeCCceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCc---HHHHHHHHhhCCcEEEEEe
Q 029158           64 KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD---HELISLMERSQTKYQVVLT  140 (198)
Q Consensus        64 ~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~---~~~~~~~~~~~~p~iiv~n  140 (198)
                      ..+....+|+|.|+.+....-  .   ......-+......|.++-|+|+.+.....+   ..+.+++.-.+   ++|+|
T Consensus        82 ~~~~D~ivIEtTGlA~P~pv~--~---t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~AD---~ivlN  153 (323)
T COG0523          82 RDRPDRLVIETTGLADPAPVI--Q---TFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAFAD---VIVLN  153 (323)
T ss_pred             cCCCCEEEEeCCCCCCCHHHH--H---HhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHhCc---EEEEe
Confidence            123578899999997752111  0   1111123334445788999999987433332   22345555444   99999


Q ss_pred             ccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEecc
Q 029158          141 KTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSS  176 (198)
Q Consensus       141 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa  176 (198)
                      |.|+.++.+++.....+++.     .+..+++.+|.
T Consensus       154 K~Dlv~~~~l~~l~~~l~~l-----np~A~i~~~~~  184 (323)
T COG0523         154 KTDLVDAEELEALEARLRKL-----NPRARIIETSY  184 (323)
T ss_pred             cccCCCHHHHHHHHHHHHHh-----CCCCeEEEccc
Confidence            99999988655544554443     33577888776

>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]

Probab=99.08  E-value=2.5e-10  Score=87.75  Aligned_cols=158  Identities=17%  Similarity=0.184  Sum_probs=105.5

Q ss_pred             CCCCCCeEEEEcCCCCCHHHHHHHHhcCc-----------------------cceee------cCCCCceeEEE---EEE
Q 029158           17 PAPDLPEIAFAGRSNVGKSSMLNALTRQW-----------------------GVVRT------SDKPGLTQTIN---FFK   64 (198)
Q Consensus        17 ~~~~~~~v~~vG~~~~GKSsli~~l~~~~-----------------------~~~~~------~~~~~~t~~~~---~~~   64 (198)
                      ++....+++++|...+||||+-..++...                       .....      ....+-|....   +..
T Consensus        75 ~pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEt  154 (501)
T KOG0459|consen   75 YPKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFET  154 (501)
T ss_pred             CCCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEe
Confidence            45667899999999999999988877431                       00000      01111222222   333


Q ss_pred             eCCceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCc-------CcHHHHHHHHhhC-CcEE
Q 029158           65 LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKP-------RDHELISLMERSQ-TKYQ  136 (198)
Q Consensus        65 ~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~-------~~~~~~~~~~~~~-~p~i  136 (198)
                      ...+++++|+||+             ..+..+++.+..++|+.++|+.+..+-.+       +..+....+...+ ...|
T Consensus       155 e~~~ftiLDApGH-------------k~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lV  221 (501)
T KOG0459|consen  155 ENKRFTILDAPGH-------------KSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLI  221 (501)
T ss_pred             cceeEEeeccCcc-------------cccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEE
Confidence            4578999999998             56677899999999999999998653211       2344444444444 5789


Q ss_pred             EEEeccCCCCcHHHHHHHHHHHHHHHhcc-------CCCCCcEEeccCCCCChHHHHH
Q 029158          137 VVLTKTDTVFPIDVARRAMQIEESLKANN-------SLVQPVMMVSSKSGAGIRSLRT  187 (198)
Q Consensus       137 iv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-------~~~~~v~~~Sa~~~~gi~~l~~  187 (198)
                      +++||+|-++.+.-.++.+++.+.+....       .....++++|..+|.++.+..+
T Consensus       222 v~vNKMddPtvnWs~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~  279 (501)
T KOG0459|consen  222 VLINKMDDPTVNWSNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD  279 (501)
T ss_pred             EEEEeccCCccCcchhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc
Confidence            99999999876554444444444443322       3467799999999999987765

>cd01859 MJ1464 MJ1464

Probab=99.07  E-value=7e-10  Score=76.95  Aligned_cols=57  Identities=37%  Similarity=0.567  Sum_probs=47.4

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEeCCceEEEeCCCC
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGY   77 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~iiDtpG~   77 (198)
                      ...+++++|.+|+|||||+|++.+. ......+.+++|...++...+..+.+|||||+
T Consensus       100 ~~~~~~~ig~~~~Gkssl~~~l~~~-~~~~~~~~~~~t~~~~~~~~~~~~~~~DtpGi  156 (156)
T cd01859         100 KEGKVGVVGYPNVGKSSIINALKGR-HSASTSPSPGYTKGEQLVKITSKIYLLDTPGV  156 (156)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCC-CccccCCCCCeeeeeEEEEcCCCEEEEECcCC
Confidence            4568999999999999999999987 45566777788877776666778999999995

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>cd03112 CobW_like The function of this protein family is unkown

Probab=99.04  E-value=1.9e-09  Score=74.90  Aligned_cols=114  Identities=21%  Similarity=0.281  Sum_probs=66.0

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCc---cceeecCCCC--------------ceeEEE---------------E-------
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQW---GVVRTSDKPG--------------LTQTIN---------------F-------   62 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~~---~~~~~~~~~~--------------~t~~~~---------------~-------   62 (198)
                      |.++++|..|+|||||++.++...   .+....+..+              ......               +       
T Consensus         1 p~~~l~G~~GsGKTtl~~~l~~~~~~~~~~~i~~~~G~~~~d~~~~~~~~~~v~~l~~GCiCC~~~~~l~~~l~~l~~~~   80 (158)
T cd03112           1 PVTVLTGFLGAGKTTLLNHILTEQHGRKIAVIENEFGEVGIDNQLVVDTDEEIIEMNNGCICCTVRGDLIRALLDLLERL   80 (158)
T ss_pred             CEEEEEECCCCCHHHHHHHHHhcccCCcEEEEecCCCccchhHHHHhCCCceEEEeCCCEeEeeCchhHHHHHHHHHHHH
Confidence            467899999999999999988652   1111111111              000000               0       


Q ss_pred             --EEeCCceEEEeCCCCccccchhHHHHHHHH-HHHHHHhcccccceEEEEEeCCCCCCc--CcHHHHHHHHhhCCcEEE
Q 029158           63 --FKLGTKLCLVDLPGYGFAYAKEEVKDAWEE-LVKEYVSTRVSLKRVCLLIDTKWGVKP--RDHELISLMERSQTKYQV  137 (198)
Q Consensus        63 --~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~-~~~~~~~~~~~~d~vi~v~d~~~~~~~--~~~~~~~~~~~~~~p~ii  137 (198)
                        .....+..++||||+.+..   ..   ... +....+.....+|.+++++|+.+....  ....+..++...+   ++
T Consensus        81 ~~~~~~~d~I~IEt~G~~~p~---~~---~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~ad---~i  151 (158)
T cd03112          81 DAGKIAFDRIVIETTGLADPG---PV---AQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAFAD---RI  151 (158)
T ss_pred             HhccCCCCEEEEECCCcCCHH---HH---HHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHHCC---EE
Confidence              0124678999999986531   11   111 112234445568999999999762221  1233455565545   88


Q ss_pred             EEeccCC
Q 029158          138 VLTKTDT  144 (198)
Q Consensus       138 v~nK~Dl  144 (198)
                      |+||+|+
T Consensus       152 vlnk~dl  158 (158)
T cd03112         152 LLNKTDL  158 (158)
T ss_pred             EEecccC
Confidence            9999996

The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.

>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain

Probab=99.03  E-value=3.2e-09  Score=77.94  Aligned_cols=91  Identities=19%  Similarity=0.097  Sum_probs=60.0

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCc-cceeecCCCCceeEEEEEEe------CCceEEEeCCCCccccchh-HHHHHH
Q 029158           19 PDLPEIAFAGRSNVGKSSMLNALTRQW-GVVRTSDKPGLTQTINFFKL------GTKLCLVDLPGYGFAYAKE-EVKDAW   90 (198)
Q Consensus        19 ~~~~~v~~vG~~~~GKSsli~~l~~~~-~~~~~~~~~~~t~~~~~~~~------~~~~~iiDtpG~~~~~~~~-~~~~~~   90 (198)
                      .+...|+++|++++|||+|+|.|++.. ..........||+.+..+..      +..+.++||||+.+..... .....+
T Consensus         5 ~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~~   84 (224)
T cd01851           5 FPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDARL   84 (224)
T ss_pred             CCEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhHH
Confidence            345679999999999999999999872 33444455778887664433      3689999999997754322 111111


Q ss_pred             HHHHHHHHhcccccceEEEEEeCCC
Q 029158           91 EELVKEYVSTRVSLKRVCLLIDTKW  115 (198)
Q Consensus        91 ~~~~~~~~~~~~~~d~vi~v~d~~~  115 (198)
                      ..+     .. -.++.++|.++...
T Consensus        85 ~~l-----~~-llss~~i~n~~~~~  103 (224)
T cd01851          85 FAL-----AT-LLSSVLIYNSWETI  103 (224)
T ss_pred             HHH-----HH-HHhCEEEEeccCcc
Confidence            111     11 12788888888764

Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein

>PRK12289 GTPase RsgA; Reviewed

Probab=99.03  E-value=4.8e-10  Score=87.11  Aligned_cols=57  Identities=33%  Similarity=0.482  Sum_probs=44.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCccceeecCCCC-------ceeEEEEEEeCCceEEEeCCCCccc
Q 029158           23 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPG-------LTQTINFFKLGTKLCLVDLPGYGFA   80 (198)
Q Consensus        23 ~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~-------~t~~~~~~~~~~~~~iiDtpG~~~~   80 (198)
                      .++++|++|+|||||+|+|++. ....++..++       ||+..+.+.......++||||+..-
T Consensus       174 i~v~iG~SgVGKSSLIN~L~~~-~~~~t~~vs~~~~rGrHTT~~~~l~~l~~g~~liDTPG~~~~  237 (352)
T PRK12289        174 ITVVAGPSGVGKSSLINRLIPD-VELRVGKVSGKLGRGRHTTRHVELFELPNGGLLADTPGFNQP  237 (352)
T ss_pred             eEEEEeCCCCCHHHHHHHHcCc-cccccccccCCCCCCCCcCceeEEEECCCCcEEEeCCCcccc
Confidence            5899999999999999999986 3344455555       8888888777555689999998653

>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]

Probab=99.03  E-value=4.6e-09  Score=83.91  Aligned_cols=134  Identities=23%  Similarity=0.242  Sum_probs=78.2

Q ss_pred             CCCCCCCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCC---------------------------------------
Q 029158           14 SSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKP---------------------------------------   54 (198)
Q Consensus        14 ~~~~~~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~---------------------------------------   54 (198)
                      ++-...+.|+|++||..++||||.+..+...+-++..+..-                                       
T Consensus       301 sYnt~DhLPRVVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRaPVKVTLsEGPyHVAqFrDSsREfDLTKE~DLq~LR  380 (980)
T KOG0447|consen  301 SYNTQDHLPRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTLSEGPHHVALFKDSSREFDLTKEEDLAALR  380 (980)
T ss_pred             cccccccCceEEEEcCccccchHHHHHHHHhccCcCCCcceeccCCeEEEeccCcchhhhhccccccccccchhHHHHHH
Confidence            33455688999999999999999999988652111111100                                       


Q ss_pred             -------------CceeEEE---EEEeC---CceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCC
Q 029158           55 -------------GLTQTIN---FFKLG---TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKW  115 (198)
Q Consensus        55 -------------~~t~~~~---~~~~~---~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~  115 (198)
                                   ++|....   ..-.+   .+.+++|.||+..+...+...+.-+.+.+....+..+.++||+++--.+
T Consensus       381 ~e~E~RMr~sVr~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGS  460 (980)
T KOG0447|consen  381 HEIELRMRKNVKEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGS  460 (980)
T ss_pred             HHHHHHHHhcccCCcccccceEEEeecCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCC
Confidence                         0111100   00011   3689999999876544433222223333333333344788888874332


Q ss_pred             -CCC-cCcHHHHHHHHhhCCcEEEEEeccCCCCc
Q 029158          116 -GVK-PRDHELISLMERSQTKYQVVLTKTDTVFP  147 (198)
Q Consensus       116 -~~~-~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~  147 (198)
                       +.. ..--++..++...+.+.|+|+||+|+...
T Consensus       461 VDAERSnVTDLVsq~DP~GrRTIfVLTKVDlAEk  494 (980)
T KOG0447|consen  461 VDAERSIVTDLVSQMDPHGRRTIFVLTKVDLAEK  494 (980)
T ss_pred             cchhhhhHHHHHHhcCCCCCeeEEEEeecchhhh
Confidence             111 12234566667778999999999999754

>KOG1673 consensus Ras GTPases [General function prediction only]

Probab=99.03  E-value=2.8e-09  Score=71.55  Aligned_cols=156  Identities=13%  Similarity=0.140  Sum_probs=93.3

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCC---ceeEEEEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHH
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPG---LTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE   96 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~---~t~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~   96 (198)
                      -..+|.++|.+..|||||+-.+.+...-.......+   ..+.......+..+.+||..|.             ++...+
T Consensus        19 Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~-------------~~~~n~   85 (205)
T KOG1673|consen   19 VSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQ-------------REFINM   85 (205)
T ss_pred             eEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCc-------------Hhhhcc
Confidence            357899999999999999988887631111111111   1112223333567899999995             111211


Q ss_pred             HHhcccccceEEEEEeCCCCCCcC-cHHHHHHHHhhCC--cEEEEEeccCCCC--cHHHH-HHHHHHHHHHHhccCCCCC
Q 029158           97 YVSTRVSLKRVCLLIDTKWGVKPR-DHELISLMERSQT--KYQVVLTKTDTVF--PIDVA-RRAMQIEESLKANNSLVQP  170 (198)
Q Consensus        97 ~~~~~~~~d~vi~v~d~~~~~~~~-~~~~~~~~~~~~~--p~iiv~nK~Dl~~--~~~~~-~~~~~~~~~~~~~~~~~~~  170 (198)
                      .--....+-+++|++|.++...-+ -.+|+++.+..+.  --|+|+||-|+.-  +.+.+ .+..+......   ....+
T Consensus        86 lPiac~dsvaIlFmFDLt~r~TLnSi~~WY~QAr~~NktAiPilvGTKyD~fi~lp~e~Q~~I~~qar~YAk---~mnAs  162 (205)
T KOG1673|consen   86 LPIACKDSVAILFMFDLTRRSTLNSIKEWYRQARGLNKTAIPILVGTKYDLFIDLPPELQETISRQARKYAK---VMNAS  162 (205)
T ss_pred             CceeecCcEEEEEEEecCchHHHHHHHHHHHHHhccCCccceEEeccchHhhhcCCHHHHHHHHHHHHHHHH---HhCCc
Confidence            111223356788999988643322 2567887776542  1367899999742  22222 22222222221   22588


Q ss_pred             cEEeccCCCCChHHHHHHHHH
Q 029158          171 VMMVSSKSGAGIRSLRTVLSK  191 (198)
Q Consensus       171 v~~~Sa~~~~gi~~l~~~i~~  191 (198)
                      .|++|+.+.-|++.+|..+..
T Consensus       163 L~F~Sts~sINv~KIFK~vlA  183 (205)
T KOG1673|consen  163 LFFCSTSHSINVQKIFKIVLA  183 (205)
T ss_pred             EEEeeccccccHHHHHHHHHH
Confidence            999999999999999986654

>PRK13796 GTPase YqeH; Provisional

Probab=99.02  E-value=7e-10  Score=87.02  Aligned_cols=57  Identities=32%  Similarity=0.420  Sum_probs=47.7

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCc----cceeecCCCCceeEEEEEEeCCceEEEeCCCCc
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQW----GVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYG   78 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~~----~~~~~~~~~~~t~~~~~~~~~~~~~iiDtpG~~   78 (198)
                      .+++++|.+|+|||||+|+|++..    .....+..++||.+......+....++||||+.
T Consensus       161 ~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~~~~l~DTPGi~  221 (365)
T PRK13796        161 RDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDDGSFLYDTPGII  221 (365)
T ss_pred             CeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCCCcEEEECCCcc
Confidence            479999999999999999998542    234578889999998877776678999999984

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=99.02  E-value=8.6e-10  Score=81.97  Aligned_cols=56  Identities=32%  Similarity=0.459  Sum_probs=41.7

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCccceeecC-------CCCceeEEEEEEeCCceEEEeCCCCcc
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSD-------KPGLTQTINFFKLGTKLCLVDLPGYGF   79 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~-------~~~~t~~~~~~~~~~~~~iiDtpG~~~   79 (198)
                      ..++++|++|+|||||+|+|.+.. ...++.       ...||+....... ..-.++||||+..
T Consensus       121 ~~~~~~G~sgvGKStLiN~L~~~~-~~~t~~i~~~~~~G~hTT~~~~l~~l-~~~~liDtPG~~~  183 (245)
T TIGR00157       121 RISVFAGQSGVGKSSLINALDPSV-KQQVNDISSKLGLGKHTTTHVELFHF-HGGLIADTPGFNE  183 (245)
T ss_pred             CEEEEECCCCCCHHHHHHHHhhhh-hccccceeccCCCCCCcCCceEEEEc-CCcEEEeCCCccc
Confidence            578999999999999999999863 222222       2347877776666 3458999999865

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt

Probab=98.96  E-value=1.2e-09  Score=77.40  Aligned_cols=128  Identities=16%  Similarity=0.182  Sum_probs=70.9

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhc----CccceeecCCCC-ce-------------eEE------------------E-EEE
Q 029158           22 PEIAFAGRSNVGKSSMLNALTR----QWGVVRTSDKPG-LT-------------QTI------------------N-FFK   64 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~----~~~~~~~~~~~~-~t-------------~~~------------------~-~~~   64 (198)
                      |.+++.|..|||||||+++++.    ..++....+..+ ..             ...                  . ...
T Consensus         1 Pv~ii~GfLGsGKTTli~~ll~~~~~~~~~~vI~ne~g~~~iD~~~l~~~~~~v~~l~~gcicc~~~~~~~~~l~~l~~~   80 (178)
T PF02492_consen    1 PVIIITGFLGSGKTTLINHLLKRNRQGERVAVIVNEFGEVNIDAELLQEDGVPVVELNNGCICCTLRDDLVEALRRLLRE   80 (178)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHHHHTTTS-EEEEECSTTSTHHHHHHHHTTT-EEEEECTTTESS-TTS-HHHHHHHHCCC
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHhcCCceeEEEEccccccccchhhhcccceEEEEecCCCcccccHHHHHHHHHHHHHh
Confidence            5688999999999999999992    223343433332 00             000                  0 011


Q ss_pred             e--CCceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCC--CCcCcHHHHHHHHhhCCcEEEEEe
Q 029158           65 L--GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG--VKPRDHELISLMERSQTKYQVVLT  140 (198)
Q Consensus        65 ~--~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~--~~~~~~~~~~~~~~~~~p~iiv~n  140 (198)
                      .  ..+..++++.|..+...-     .+.   ...+...-..+.++.|+|+..-  .......+..++...+   ++|+|
T Consensus        81 ~~~~~d~IiIE~sG~a~p~~l-----~~~---~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~AD---vIvln  149 (178)
T PF02492_consen   81 YEERPDRIIIETSGLADPAPL-----ILQ---DPPLKEDFRLDSIITVVDATNFDELENIPELLREQIAFAD---VIVLN  149 (178)
T ss_dssp             CHGC-SEEEEEEECSSGGGGH-----HHH---SHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHCT-S---EEEEE
T ss_pred             cCCCcCEEEECCccccccchh-----hhc---cccccccccccceeEEeccccccccccchhhhhhcchhcC---EEEEe
Confidence            1  357899999997654221     001   2222333346889999999652  1112223344454444   99999


Q ss_pred             ccCCCCcHH-HHHHHHHHHHH
Q 029158          141 KTDTVFPID-VARRAMQIEES  160 (198)
Q Consensus       141 K~Dl~~~~~-~~~~~~~~~~~  160 (198)
                      |+|+.+..+ .+...+.+++.
T Consensus       150 K~D~~~~~~~i~~~~~~ir~l  170 (178)
T PF02492_consen  150 KIDLVSDEQKIERVREMIREL  170 (178)
T ss_dssp             -GGGHHHH--HHHHHHHHHHH
T ss_pred             ccccCChhhHHHHHHHHHHHH
Confidence            999998763 24444444443

Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.

>TIGR00092 GTP-binding protein YchF

Probab=98.96  E-value=2e-09  Score=83.59  Aligned_cols=87  Identities=21%  Similarity=0.138  Sum_probs=63.8

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEe--------------------CCceEEEeCCCCcccc
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL--------------------GTKLCLVDLPGYGFAY   81 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~--------------------~~~~~iiDtpG~~~~~   81 (198)
                      .++.++|.|++|||||+++|.+.. .....+++.||.+......                    ...+.++|.||+....
T Consensus         3 lk~GivGlPn~GKSTlfnaLT~~~-~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gA   81 (368)
T TIGR00092         3 LSGGIVGLPNVGKSTLFAATTNLL-GNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGA   81 (368)
T ss_pred             ceEEEECCCCCChHHHHHHHhCCC-ccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccch
Confidence            678999999999999999999983 3377888888765332111                    1368999999986543


Q ss_pred             chhHHHHHHHHHHHHHHhcccccceEEEEEeCCC
Q 029158           82 AKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKW  115 (198)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~  115 (198)
                      ...      ..+...++...+.+|+++.|+++..
T Consensus        82 s~g------~Glgn~fL~~ir~~d~l~hVvr~f~  109 (368)
T TIGR00092        82 SKG------EGLGNQFLANIREVDIIQHVVRCFE  109 (368)
T ss_pred             hcc------cCcchHHHHHHHhCCEEEEEEeCCC
Confidence            222      2234467777777999999999864

This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.

>PRK12289 GTPase RsgA; Reviewed

Probab=98.93  E-value=7.3e-09  Score=80.59  Aligned_cols=84  Identities=15%  Similarity=0.166  Sum_probs=58.2

Q ss_pred             cccceEEEEEeCCCCCCcCc--HHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEeccCCC
Q 029158          102 VSLKRVCLLIDTKWGVKPRD--HELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSG  179 (198)
Q Consensus       102 ~~~d~vi~v~d~~~~~~~~~--~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~~  179 (198)
                      .++|.+++|+|+.++.....  ..++..+...+.|+++|+||+|+.+..+.....+    .+..   .+.+++++||+++
T Consensus        88 aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~~~ip~ILVlNK~DLv~~~~~~~~~~----~~~~---~g~~v~~iSA~tg  160 (352)
T PRK12289         88 ANADQILLVFALAEPPLDPWQLSRFLVKAESTGLEIVLCLNKADLVSPTEQQQWQD----RLQQ---WGYQPLFISVETG  160 (352)
T ss_pred             hcCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEchhcCChHHHHHHHH----HHHh---cCCeEEEEEcCCC
Confidence            34899999999975321211  2344444556899999999999986544332222    2221   2467999999999


Q ss_pred             CChHHHHHHHHHh
Q 029158          180 AGIRSLRTVLSKI  192 (198)
Q Consensus       180 ~gi~~l~~~i~~~  192 (198)
                      .|+++|++++...
T Consensus       161 ~GI~eL~~~L~~k  173 (352)
T PRK12289        161 IGLEALLEQLRNK  173 (352)
T ss_pred             CCHHHHhhhhccc
Confidence            9999999988653

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=98.91  E-value=2.2e-08  Score=77.00  Aligned_cols=152  Identities=16%  Similarity=0.205  Sum_probs=80.3

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCc-----cceeecCCCC------------ceeEEEEE-------------------
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQW-----GVVRTSDKPG------------LTQTINFF-------------------   63 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~~-----~~~~~~~~~~------------~t~~~~~~-------------------   63 (198)
                      ....++++|++|+||||++..|....     .+........            .-....+.                   
T Consensus       113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~  192 (318)
T PRK10416        113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAA  192 (318)
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHH
Confidence            34578999999999999999887421     1111111100            00001110                   


Q ss_pred             -EeCCceEEEeCCCCccccchhHHHHHHHHHHHHHHh--cccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEe
Q 029158           64 -KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS--TRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLT  140 (198)
Q Consensus        64 -~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~--~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~n  140 (198)
                       ..+.++.++||||.....  ....+....+.+ ...  ....++.+++|+|+..+  ...........+.-.+.-+|+|
T Consensus       193 ~~~~~D~ViIDTaGr~~~~--~~l~~eL~~~~~-v~~~~~~~~p~~~~LVl~a~~g--~~~~~~a~~f~~~~~~~giIlT  267 (318)
T PRK10416        193 KARGIDVLIIDTAGRLHNK--TNLMEELKKIKR-VIKKADPDAPHEVLLVLDATTG--QNALSQAKAFHEAVGLTGIILT  267 (318)
T ss_pred             HhCCCCEEEEeCCCCCcCC--HHHHHHHHHHHH-HHhhhcCCCCceEEEEEECCCC--hHHHHHHHHHHhhCCCCEEEEE
Confidence             124689999999964321  111111122111 111  11236789999999853  2222222222221235579999


Q ss_pred             ccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEeccCCCCChHHHHH
Q 029158          141 KTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRT  187 (198)
Q Consensus       141 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~~~gi~~l~~  187 (198)
                      |.|......  .......+.       ..|+.+++  +|++++++..
T Consensus       268 KlD~t~~~G--~~l~~~~~~-------~~Pi~~v~--~Gq~~~Dl~~  303 (318)
T PRK10416        268 KLDGTAKGG--VVFAIADEL-------GIPIKFIG--VGEGIDDLQP  303 (318)
T ss_pred             CCCCCCCcc--HHHHHHHHH-------CCCEEEEe--CCCChhhCcc
Confidence            999664332  222222221       58999998  8888877754

>PRK00098 GTPase RsgA; Reviewed

Probab=98.90  E-value=5.9e-09  Score=79.77  Aligned_cols=57  Identities=32%  Similarity=0.493  Sum_probs=42.2

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCccceeecCC-------CCceeEEEEEEeCCceEEEeCCCCcc
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDK-------PGLTQTINFFKLGTKLCLVDLPGYGF   79 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~-------~~~t~~~~~~~~~~~~~iiDtpG~~~   79 (198)
                      ..++++|++|+|||||+|+|++.. ....+..       ..||+.......+....++||||+.+
T Consensus       165 k~~~~~G~sgvGKStlin~l~~~~-~~~~g~v~~~~~~G~htT~~~~~~~~~~~~~~~DtpG~~~  228 (298)
T PRK00098        165 KVTVLAGQSGVGKSTLLNALAPDL-ELKTGEISEALGRGKHTTTHVELYDLPGGGLLIDTPGFSS  228 (298)
T ss_pred             ceEEEECCCCCCHHHHHHHHhCCc-CCCCcceeccCCCCCcccccEEEEEcCCCcEEEECCCcCc
Confidence            468999999999999999999863 2222222       23677667666665679999999863

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=98.90  E-value=1.3e-08  Score=75.77  Aligned_cols=83  Identities=17%  Similarity=0.264  Sum_probs=57.5

Q ss_pred             ccceEEEEEeCCCCC-CcCc-HHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEeccCCCC
Q 029158          103 SLKRVCLLIDTKWGV-KPRD-HELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGA  180 (198)
Q Consensus       103 ~~d~vi~v~d~~~~~-~~~~-~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~~~  180 (198)
                      .+|.+++|+|+.++. .... ..++..+...+.|+++|+||+||.+......   ...+.+..   .+.+++++||++|+
T Consensus        36 n~D~viiV~d~~~p~~s~~~l~r~l~~~~~~~i~~vIV~NK~DL~~~~~~~~---~~~~~~~~---~g~~v~~~SAktg~  109 (245)
T TIGR00157        36 NIDQIVIVSSAVLPELSLNQLDRFLVVAEAQNIEPIIVLNKIDLLDDEDMEK---EQLDIYRN---IGYQVLMTSSKNQD  109 (245)
T ss_pred             cCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECcccCCCHHHHH---HHHHHHHH---CCCeEEEEecCCch
Confidence            389999999998633 2111 2345555556899999999999976443321   11122222   25789999999999


Q ss_pred             ChHHHHHHHHH
Q 029158          181 GIRSLRTVLSK  191 (198)
Q Consensus       181 gi~~l~~~i~~  191 (198)
                      |++++++.+..
T Consensus       110 gi~eLf~~l~~  120 (245)
T TIGR00157       110 GLKELIEALQN  120 (245)
T ss_pred             hHHHHHhhhcC
Confidence            99999998764

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>COG1162 Predicted GTPases [General function prediction only]

Probab=98.90  E-value=5.6e-09  Score=78.37  Aligned_cols=57  Identities=28%  Similarity=0.391  Sum_probs=43.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCc--cceeec----CCCCceeEEEEEEeCCceEEEeCCCCcc
Q 029158           23 EIAFAGRSNVGKSSMLNALTRQW--GVVRTS----DKPGLTQTINFFKLGTKLCLVDLPGYGF   79 (198)
Q Consensus        23 ~v~~vG~~~~GKSsli~~l~~~~--~~~~~~----~~~~~t~~~~~~~~~~~~~iiDtpG~~~   79 (198)
                      ..+++|++|+|||||+|+|....  ....++    .-..||+....+..+..=.++||||+.+
T Consensus       166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG~iiDTPGf~~  228 (301)
T COG1162         166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGGWIIDTPGFRS  228 (301)
T ss_pred             eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCCEEEeCCCCCc
Confidence            68999999999999999999742  111111    2244788888888877789999999865

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=98.87  E-value=4e-08  Score=77.11  Aligned_cols=99  Identities=17%  Similarity=0.119  Sum_probs=62.9

Q ss_pred             HHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcH-HHHHHHHHHHHHHHhccCC
Q 029158           89 AWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPI-DVARRAMQIEESLKANNSL  167 (198)
Q Consensus        89 ~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~  167 (198)
                      .+..+...+..   .++++++|+|+.+....-..++.+.+.  +.|+++|+||+|+.... ..++..+.+++........
T Consensus        52 ~f~~~l~~~~~---~~~~Il~VvD~~d~~~s~~~~l~~~~~--~~piilV~NK~DLl~k~~~~~~~~~~l~~~~k~~g~~  126 (360)
T TIGR03597        52 DFLNLLNSLGD---SNALIVYVVDIFDFEGSLIPELKRFVG--GNPVLLVGNKIDLLPKSVNLSKIKEWMKKRAKELGLK  126 (360)
T ss_pred             HHHHHHhhccc---CCcEEEEEEECcCCCCCccHHHHHHhC--CCCEEEEEEchhhCCCCCCHHHHHHHHHHHHHHcCCC
Confidence            33444444433   378999999997643333333333332  68999999999997543 2233334444333332211


Q ss_pred             CCCcEEeccCCCCChHHHHHHHHHh
Q 029158          168 VQPVMMVSSKSGAGIRSLRTVLSKI  192 (198)
Q Consensus       168 ~~~v~~~Sa~~~~gi~~l~~~i~~~  192 (198)
                      ...++++||++++|++++++.|.+.
T Consensus       127 ~~~i~~vSAk~g~gv~eL~~~l~~~  151 (360)
T TIGR03597       127 PVDIILVSAKKGNGIDELLDKIKKA  151 (360)
T ss_pred             cCcEEEecCCCCCCHHHHHHHHHHH
Confidence            2358999999999999999999765

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=98.87  E-value=1.9e-07  Score=70.42  Aligned_cols=153  Identities=18%  Similarity=0.205  Sum_probs=80.2

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcC-----ccceeecCCCC------------ceeEEEEE-------------------
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQ-----WGVVRTSDKPG------------LTQTINFF-------------------   63 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~-----~~~~~~~~~~~------------~t~~~~~~-------------------   63 (198)
                      ....++++|++|+||||++..|...     .++........            .-....+.                   
T Consensus        71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l~~~  150 (272)
T TIGR00064        71 KPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQKA  150 (272)
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHHH
Confidence            3457899999999999998887632     11211111100            00001111                   


Q ss_pred             -EeCCceEEEeCCCCccccchhHHHHHHHHHHHHHH-hcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEec
Q 029158           64 -KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV-STRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTK  141 (198)
Q Consensus        64 -~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK  141 (198)
                       ..+..+.++||||....  .....+.+..+.+... .....+|.+++|+|+..+  ...........+.-...-+|+||
T Consensus       151 ~~~~~D~ViIDT~G~~~~--d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~--~~~~~~~~~f~~~~~~~g~IlTK  226 (272)
T TIGR00064       151 KARNIDVVLIDTAGRLQN--KVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTG--QNALEQAKVFNEAVGLTGIILTK  226 (272)
T ss_pred             HHCCCCEEEEeCCCCCcc--hHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCC--HHHHHHHHHHHhhCCCCEEEEEc
Confidence             12468999999996442  1111111111111110 011237889999999742  22323222222212356789999


Q ss_pred             cCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEeccCCCCChHHHHH
Q 029158          142 TDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRT  187 (198)
Q Consensus       142 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~~~gi~~l~~  187 (198)
                      +|.......  ........       ..|+.+++  +|++++++..
T Consensus       227 lDe~~~~G~--~l~~~~~~-------~~Pi~~~~--~Gq~~~dl~~  261 (272)
T TIGR00064       227 LDGTAKGGI--ILSIAYEL-------KLPIKFIG--VGEKIDDLAP  261 (272)
T ss_pred             cCCCCCccH--HHHHHHHH-------CcCEEEEe--CCCChHhCcc
Confidence            999764321  11222211       47888887  7888877654

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>cd01854 YjeQ_engC YjeQ/EngC

Probab=98.85  E-value=1.3e-08  Score=77.49  Aligned_cols=57  Identities=30%  Similarity=0.385  Sum_probs=41.5

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCccceeec-------CCCCceeEEEEEEeCCceEEEeCCCCcc
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTS-------DKPGLTQTINFFKLGTKLCLVDLPGYGF   79 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~-------~~~~~t~~~~~~~~~~~~~iiDtpG~~~   79 (198)
                      ..++++|++|+|||||+|.|++.. ....+       ....||.............++||||+.+
T Consensus       162 k~~~~~G~sg~GKSTlin~l~~~~-~~~~g~v~~~~~~g~~tT~~~~~~~~~~~~~liDtPG~~~  225 (287)
T cd01854         162 KTSVLVGQSGVGKSTLINALLPDL-DLATGEISEKLGRGRHTTTHRELFPLPGGGLLIDTPGFRE  225 (287)
T ss_pred             ceEEEECCCCCCHHHHHHHHhchh-hccccceeccCCCCCcccceEEEEEcCCCCEEEECCCCCc
Confidence            579999999999999999999863 22111       1233666666666654568999999844

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.84  E-value=1e-08  Score=71.23  Aligned_cols=151  Identities=13%  Similarity=0.047  Sum_probs=92.8

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeE----EEEEEe-C-CceEEEeCCCCccccchhHHHHHHHHH
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT----INFFKL-G-TKLCLVDLPGYGFAYAKEEVKDAWEEL   93 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~----~~~~~~-~-~~~~iiDtpG~~~~~~~~~~~~~~~~~   93 (198)
                      ...+++++|..|.||||++++.+...   ....++.|+.-    ..+... + .++..|||.|...-          ...
T Consensus         9 ~~fklvlvGdgg~gKtt~vkr~ltge---Fe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~----------ggl   75 (216)
T KOG0096|consen    9 LTFKLVLVGDGGTGKTTFVKRHLTGE---FEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKK----------GGL   75 (216)
T ss_pred             ceEEEEEecCCcccccchhhhhhccc---ceecccCcceeEEeeeeeecccCcEEEEeeecccceee----------ccc
Confidence            35688999999999999999988763   23333333321    122222 2 57899999995221          000


Q ss_pred             HHHHHhcccccceEEEEEeCCCCCCcCc--HHHHHHHHhh-CCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCC
Q 029158           94 VKEYVSTRVSLKRVCLLIDTKWGVKPRD--HELISLMERS-QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQP  170 (198)
Q Consensus        94 ~~~~~~~~~~~d~vi~v~d~~~~~~~~~--~~~~~~~~~~-~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (198)
                      -.-|+-.   ...+++++|..+.+.-..  .+.-+.++.. ++|+++++||.|........       +.........+.
T Consensus        76 rdgyyI~---~qcAiimFdVtsr~t~~n~~rwhrd~~rv~~NiPiv~cGNKvDi~~r~~k~-------k~v~~~rkknl~  145 (216)
T KOG0096|consen   76 RDGYYIQ---GQCAIIMFDVTSRFTYKNVPRWHRDLVRVRENIPIVLCGNKVDIKARKVKA-------KPVSFHRKKNLQ  145 (216)
T ss_pred             ccccEEe---cceeEEEeeeeehhhhhcchHHHHHHHHHhcCCCeeeeccceecccccccc-------ccceeeecccce
Confidence            0011111   234677788776444333  3334444433 58999999999987643111       112222344678


Q ss_pred             cEEeccCCCCChHHHHHHHHHhh
Q 029158          171 VMMVSSKSGAGIRSLRTVLSKIA  193 (198)
Q Consensus       171 v~~~Sa~~~~gi~~l~~~i~~~~  193 (198)
                      .+++||+...|.+.-|-|+.+.+
T Consensus       146 y~~iSaksn~NfekPFl~LarKl  168 (216)
T KOG0096|consen  146 YYEISAKSNYNFERPFLWLARKL  168 (216)
T ss_pred             eEEeecccccccccchHHHhhhh
Confidence            99999999999999888887754

>PRK14974 cell division protein FtsY; Provisional

Probab=98.84  E-value=4.2e-08  Score=75.82  Aligned_cols=147  Identities=20%  Similarity=0.195  Sum_probs=79.9

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC-----ccceeecCCCC---ce---------eEEEE--------------------E
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQ-----WGVVRTSDKPG---LT---------QTINF--------------------F   63 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~-----~~~~~~~~~~~---~t---------~~~~~--------------------~   63 (198)
                      ...|+++|++|+||||++..|...     ..+........   ..         ....+                    .
T Consensus       140 ~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~~  219 (336)
T PRK14974        140 PVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHAK  219 (336)
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHHH
Confidence            467999999999999988777632     11211111100   00         00000                    0


Q ss_pred             EeCCceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccC
Q 029158           64 KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTD  143 (198)
Q Consensus        64 ~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D  143 (198)
                      ..+.++.++||+|.....     ...+.++ ..+.. ....|.+++|+|+..+  ....+..+.....-..--+++||.|
T Consensus       220 ~~~~DvVLIDTaGr~~~~-----~~lm~eL-~~i~~-~~~pd~~iLVl~a~~g--~d~~~~a~~f~~~~~~~giIlTKlD  290 (336)
T PRK14974        220 ARGIDVVLIDTAGRMHTD-----ANLMDEL-KKIVR-VTKPDLVIFVGDALAG--NDAVEQAREFNEAVGIDGVILTKVD  290 (336)
T ss_pred             hCCCCEEEEECCCccCCc-----HHHHHHH-HHHHH-hhCCceEEEeeccccc--hhHHHHHHHHHhcCCCCEEEEeeec
Confidence            124579999999964321     1111221 12221 2236889999999653  2222223333322234578999999


Q ss_pred             CCCcHHHHHHHHHHHHHHHhccCCCCCcEEeccCCCCChHHHHH
Q 029158          144 TVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRT  187 (198)
Q Consensus       144 l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~~~gi~~l~~  187 (198)
                      .......  .......       ...|+.+++  +|++++++..
T Consensus       291 ~~~~~G~--~ls~~~~-------~~~Pi~~i~--~Gq~v~Dl~~  323 (336)
T PRK14974        291 ADAKGGA--ALSIAYV-------IGKPILFLG--VGQGYDDLIP  323 (336)
T ss_pred             CCCCccH--HHHHHHH-------HCcCEEEEe--CCCChhhccc
Confidence            9754321  1122221       157999987  7898887754

>PRK11537 putative GTP-binding protein YjiA; Provisional

Probab=98.83  E-value=2.8e-07  Score=71.06  Aligned_cols=115  Identities=15%  Similarity=0.184  Sum_probs=69.1

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCc---cceeecCCCCce-eE--------EEEEE-----------------------
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQW---GVVRTSDKPGLT-QT--------INFFK-----------------------   64 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~~---~~~~~~~~~~~t-~~--------~~~~~-----------------------   64 (198)
                      +.|..++.|.-|||||||+|+++...   +++...+..+.. .+        ..+..                       
T Consensus         3 ~ipv~iltGFLGaGKTTll~~ll~~~~~~riaVi~NEfG~v~iD~~ll~~~~~~v~eL~~GCiCCs~~~~l~~~l~~l~~   82 (318)
T PRK11537          3 PIAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLD   82 (318)
T ss_pred             ccCEEEEEECCCCCHHHHHHHHHhcccCCcccccccCcCCccccHHHHhCcCceEEEECCCEEEEccCchHHHHHHHHHH
Confidence            56889999999999999999998542   223332322200 00        00000                       


Q ss_pred             ------eCCceEEEeCCCCccccchhHHHHHHHHHHHH-----HHhcccccceEEEEEeCCCCCCcCc--HHHHHHHHhh
Q 029158           65 ------LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE-----YVSTRVSLKRVCLLIDTKWGVKPRD--HELISLMERS  131 (198)
Q Consensus        65 ------~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~d~vi~v~d~~~~~~~~~--~~~~~~~~~~  131 (198)
                            ......+|+|.|+.+.          ..+...     .+...-..+.++.|+|+.......+  .....++...
T Consensus        83 ~~~~~~~~~d~IvIEttG~a~p----------~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~~A  152 (318)
T PRK11537         83 NLDKGNIQFDRLVIECTGMADP----------GPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGYA  152 (318)
T ss_pred             HHhccCCCCCEEEEECCCccCH----------HHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHHhC
Confidence                  1256789999998653          122222     2233334688999999986332222  1223455544


Q ss_pred             CCcEEEEEeccCCCCc
Q 029158          132 QTKYQVVLTKTDTVFP  147 (198)
Q Consensus       132 ~~p~iiv~nK~Dl~~~  147 (198)
                      +   ++|+||+|+.+.
T Consensus       153 D---~IvlnK~Dl~~~  165 (318)
T PRK11537        153 D---RILLTKTDVAGE  165 (318)
T ss_pred             C---EEEEeccccCCH
Confidence            4   999999999974

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=98.83  E-value=1.1e-07  Score=75.40  Aligned_cols=118  Identities=19%  Similarity=0.219  Sum_probs=66.2

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhc-----CccceeecCCCC-----------ce-eEEEEEE-------------------
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTR-----QWGVVRTSDKPG-----------LT-QTINFFK-------------------   64 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~-----~~~~~~~~~~~~-----------~t-~~~~~~~-------------------   64 (198)
                      ...|+++|++|+||||++..|..     ...+..+.....           .. ..+.++.                   
T Consensus       100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~  179 (429)
T TIGR01425       100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFK  179 (429)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHHH
Confidence            45689999999999999998862     112222222110           00 0011111                   


Q ss_pred             -eCCceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccC
Q 029158           65 -LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTD  143 (198)
Q Consensus        65 -~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D  143 (198)
                       .+.++.|+||||....   +  .....+ +..+. ....++.+++|+|+..+  .......+.+.+.-.+.-+|+||.|
T Consensus       180 ~~~~DvViIDTaGr~~~---d--~~lm~E-l~~i~-~~~~p~e~lLVlda~~G--q~a~~~a~~F~~~~~~~g~IlTKlD  250 (429)
T TIGR01425       180 KENFDIIIVDTSGRHKQ---E--DSLFEE-MLQVA-EAIQPDNIIFVMDGSIG--QAAEAQAKAFKDSVDVGSVIITKLD  250 (429)
T ss_pred             hCCCCEEEEECCCCCcc---h--HHHHHH-HHHHh-hhcCCcEEEEEeccccC--hhHHHHHHHHHhccCCcEEEEECcc
Confidence             1468999999995321   1  111122 22222 22346789999999754  2223344444443346678999999


Q ss_pred             CCCc
Q 029158          144 TVFP  147 (198)
Q Consensus       144 l~~~  147 (198)
                      ....
T Consensus       251 ~~ar  254 (429)
T TIGR01425       251 GHAK  254 (429)
T ss_pred             CCCC
Confidence            8653

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>PRK00098 GTPase RsgA; Reviewed

Probab=98.82  E-value=2.4e-08  Score=76.43  Aligned_cols=84  Identities=23%  Similarity=0.308  Sum_probs=57.1

Q ss_pred             cccceEEEEEeCCCCCCcCc--HHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEeccCCC
Q 029158          102 VSLKRVCLLIDTKWGVKPRD--HELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSG  179 (198)
Q Consensus       102 ~~~d~vi~v~d~~~~~~~~~--~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~~  179 (198)
                      ..+|.+++|+|+.++.....  .+++..+...++|+++|+||+|+....+.   .....+....   .+.+++++||+++
T Consensus        79 aniD~vllV~d~~~p~~~~~~idr~L~~~~~~~ip~iIVlNK~DL~~~~~~---~~~~~~~~~~---~g~~v~~vSA~~g  152 (298)
T PRK00098         79 ANVDQAVLVFAAKEPDFSTDLLDRFLVLAEANGIKPIIVLNKIDLLDDLEE---ARELLALYRA---IGYDVLELSAKEG  152 (298)
T ss_pred             ecCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEhHHcCCCHHH---HHHHHHHHHH---CCCeEEEEeCCCC
Confidence            45899999999976322222  34455566668999999999999743221   1122222221   2468999999999


Q ss_pred             CChHHHHHHHHH
Q 029158          180 AGIRSLRTVLSK  191 (198)
Q Consensus       180 ~gi~~l~~~i~~  191 (198)
                      +|+++|++++..
T Consensus       153 ~gi~~L~~~l~g  164 (298)
T PRK00098        153 EGLDELKPLLAG  164 (298)
T ss_pred             ccHHHHHhhccC
Confidence            999999998753

>TIGR02475 CobW cobalamin biosynthesis protein CobW

Probab=98.81  E-value=5.7e-08  Score=75.56  Aligned_cols=128  Identities=18%  Similarity=0.282  Sum_probs=75.9

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCc---cceeecCCCCce-----------------eEE-E-----------------
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQW---GVVRTSDKPGLT-----------------QTI-N-----------------   61 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~~---~~~~~~~~~~~t-----------------~~~-~-----------------   61 (198)
                      ..|..++.|.-|||||||+++++...   +++...+..+..                 ... .                 
T Consensus         3 ~ipv~iltGFLGaGKTTll~~ll~~~~~~~iavi~Ne~G~~~ID~~ll~~~~~~~~~~~~v~el~nGCiCCs~~~dl~~~   82 (341)
T TIGR02475         3 KIPVTIVTGFLGAGKTTLIRHLLQNAAGRRIAVIVNEFGDLGIDGEILKACGIEGCSEENIVELANGCICCTVADDFIPT   82 (341)
T ss_pred             ccCEEEEEECCCCCHHHHHHHHHhccCCCcEEEEECCCccccchHHHHhccccccCCcceEEEeCCCCccccCcHHHHHH
Confidence            35678999999999999999998541   223332222200                 000 0                 


Q ss_pred             ---E--EEeCCceEEEeCCCCccccchhHHHHHHHHHHHHH----HhcccccceEEEEEeCCCCCCcC------------
Q 029158           62 ---F--FKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY----VSTRVSLKRVCLLIDTKWGVKPR------------  120 (198)
Q Consensus        62 ---~--~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~----~~~~~~~d~vi~v~d~~~~~~~~------------  120 (198)
                         .  ........+++|.|+.+.          ..+...+    +......|.++.|+|+.......            
T Consensus        83 l~~l~~~~~~~d~IvIEtsG~a~P----------~~i~~~~~~~~l~~~~~l~~vvtvVDa~~~~~~~~~~~~~~~~~~~  152 (341)
T TIGR02475        83 MTKLLARRQRPDHILIETSGLALP----------KPLVQAFQWPEIRSRVTVDGVVTVVDGPAVAAGRFAADPDALDAQR  152 (341)
T ss_pred             HHHHHhccCCCCEEEEeCCCCCCH----------HHHHHHhcCccccceEEeeeEEEEEECchhhhhccccchhhhhhhc
Confidence               0  011357889999998653          2222222    22233578899999997532100            


Q ss_pred             ------------cHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHH
Q 029158          121 ------------DHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEES  160 (198)
Q Consensus       121 ------------~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~  160 (198)
                                  ...+..++..   .-++++||+|+.+..+++...+.+++.
T Consensus       153 ~~~~~~~~~~~~~~~~~~Qi~~---AD~IvlnK~Dl~~~~~l~~~~~~l~~~  201 (341)
T TIGR02475       153 AADDNLDHETPLEELFEDQLAC---ADLVILNKADLLDAAGLARVRAEIAAE  201 (341)
T ss_pred             cccccccccchHHHHHHHHHHh---CCEEEEeccccCCHHHHHHHHHHHHHh
Confidence                        0112344443   349999999999988776666666553

A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).

>KOG3905 consensus Dynein light intermediate chain [Cell motility]

Probab=98.81  E-value=2.8e-07  Score=69.53  Aligned_cols=58  Identities=17%  Similarity=0.059  Sum_probs=42.3

Q ss_pred             CCcEEEEEeccCCCCcH---------HHHHHHHHHHHHHHhccCCCCCcEEeccCCCCChHHHHHHHHHh
Q 029158          132 QTKYQVVLTKTDTVFPI---------DVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKI  192 (198)
Q Consensus       132 ~~p~iiv~nK~Dl~~~~---------~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~~~gi~~l~~~i~~~  192 (198)
                      ++|+++|+||||.++--         ..+.+...++..+...   +...|++|+|..-|++-|..+|...
T Consensus       222 Gi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~---GaaLiyTSvKE~KNidllyKYivhr  288 (473)
T KOG3905|consen  222 GIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRY---GAALIYTSVKETKNIDLLYKYIVHR  288 (473)
T ss_pred             CCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHc---CceeEEeecccccchHHHHHHHHHH
Confidence            45899999999996432         2233344444444433   6889999999999999999998764

>cd00066 G-alpha G protein alpha subunit

Probab=98.80  E-value=3.7e-08  Score=76.00  Aligned_cols=115  Identities=16%  Similarity=0.118  Sum_probs=72.1

Q ss_pred             CCceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC--------cCcHH---HHHHHHh----
Q 029158           66 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVK--------PRDHE---LISLMER----  130 (198)
Q Consensus        66 ~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~--------~~~~~---~~~~~~~----  130 (198)
                      +..+.++|++|...      .+..    +..++.   .+++|+||+|.++--.        ..-.+   .++.+-.    
T Consensus       160 ~~~~~~~DvgGq~~------~R~k----W~~~f~---~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~  226 (317)
T cd00066         160 NLKFRMFDVGGQRS------ERKK----WIHCFE---DVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWF  226 (317)
T ss_pred             ceEEEEECCCCCcc------cchh----HHHHhC---CCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccc
Confidence            45788999999522      2222    234444   3899999999986211        01111   2222222    


Q ss_pred             hCCcEEEEEeccCCCC------------------cHHHHHHHHHHHHHHHhccC---CCCCcEEeccCCCCChHHHHHHH
Q 029158          131 SQTKYQVVLTKTDTVF------------------PIDVARRAMQIEESLKANNS---LVQPVMMVSSKSGAGIRSLRTVL  189 (198)
Q Consensus       131 ~~~p~iiv~nK~Dl~~------------------~~~~~~~~~~~~~~~~~~~~---~~~~v~~~Sa~~~~gi~~l~~~i  189 (198)
                      .++|+++++||.|+..                  +.+.+...+.+...+.....   ..+-+..++|.+-+++..+++.+
T Consensus       227 ~~~pill~~NK~D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v  306 (317)
T cd00066         227 ANTSIILFLNKKDLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAV  306 (317)
T ss_pred             cCCCEEEEccChHHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHH
Confidence            2689999999999632                  12445666666666655432   23456778999999999999888


Q ss_pred             HHhh
Q 029158          190 SKIA  193 (198)
Q Consensus       190 ~~~~  193 (198)
                      .+.+
T Consensus       307 ~~~i  310 (317)
T cd00066         307 KDII  310 (317)
T ss_pred             HHHH
Confidence            7754

The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.

>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]

Probab=98.79  E-value=1e-08  Score=81.22  Aligned_cols=58  Identities=40%  Similarity=0.629  Sum_probs=52.7

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEeCCceEEEeCCCCcc
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGF   79 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~iiDtpG~~~   79 (198)
                      ...|.+||.||+||||+||+|.+. +...++..||-|+-.+.......+.+.|+||+-.
T Consensus       314 ~vtVG~VGYPNVGKSSTINaLvG~-KkVsVS~TPGkTKHFQTi~ls~~v~LCDCPGLVf  371 (562)
T KOG1424|consen  314 VVTVGFVGYPNVGKSSTINALVGR-KKVSVSSTPGKTKHFQTIFLSPSVCLCDCPGLVF  371 (562)
T ss_pred             eeEEEeecCCCCchhHHHHHHhcC-ceeeeecCCCCcceeEEEEcCCCceecCCCCccc
Confidence            578999999999999999999999 6777999999999888888889999999999754

>TIGR03348 VI_IcmF type VI secretion protein IcmF

Probab=98.78  E-value=5.9e-08  Score=86.52  Aligned_cols=127  Identities=19%  Similarity=0.249  Sum_probs=76.1

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCccceee-cC----CCCceeEEEEEEeCCceEEEeCCCCcccc--chhHHHHHHHH
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRT-SD----KPGLTQTINFFKLGTKLCLVDLPGYGFAY--AKEEVKDAWEE   92 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~-~~----~~~~t~~~~~~~~~~~~~iiDtpG~~~~~--~~~~~~~~~~~   92 (198)
                      ..|-.+++|++|+||||++...--.-..... +.    ..+.|..+.++ ...+.+++||+|---..  ........|..
T Consensus       110 ~LPWYlviG~~gsGKtt~l~~sgl~~pl~~~~~~~~~~~~~~t~~c~ww-f~~~avliDtaG~y~~~~~~~~~~~~~W~~  188 (1169)
T TIGR03348       110 DLPWYLVIGPPGSGKTTLLQNSGLKFPLAERLGAAALRGVGGTRNCDWW-FTDEAVLIDTAGRYTTQDSDPEEDAAAWLG  188 (1169)
T ss_pred             cCCCEEEECCCCCchhHHHHhCCCCCcCchhhccccccCCCCCcccceE-ecCCEEEEcCCCccccCCCcccccHHHHHH
Confidence            4588999999999999999987222111110 00    11223333332 23567899999932211  11223456777


Q ss_pred             HHHHHHhcc--cccceEEEEEeCCCCCCcCcH---H----H---HHHHHh---hCCcEEEEEeccCCCCc
Q 029158           93 LVKEYVSTR--VSLKRVCLLIDTKWGVKPRDH---E----L---ISLMER---SQTKYQVVLTKTDTVFP  147 (198)
Q Consensus        93 ~~~~~~~~~--~~~d~vi~v~d~~~~~~~~~~---~----~---~~~~~~---~~~p~iiv~nK~Dl~~~  147 (198)
                      ++....+..  .-.++||+++|..+-+.....   .    +   +..+..   ...||.+|+||||+...
T Consensus       189 fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dll~G  258 (1169)
T TIGR03348       189 FLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLLAG  258 (1169)
T ss_pred             HHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchhhcC
Confidence            776665553  458999999999863322221   1    1   122221   26899999999999864

Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.

>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]

Probab=98.77  E-value=1.7e-09  Score=83.83  Aligned_cols=115  Identities=17%  Similarity=0.209  Sum_probs=82.8

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCc----------------cceeecCCCCceeE---EEEEEeCCceEEEeCCCCccc
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQW----------------GVVRTSDKPGLTQT---INFFKLGTKLCLVDLPGYGFA   80 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~~----------------~~~~~~~~~~~t~~---~~~~~~~~~~~iiDtpG~~~~   80 (198)
                      ...+|.++..-.+||||...+++.-.                .+.......+.|.+   +++...+.++.++||||+-+-
T Consensus        36 kirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf  115 (753)
T KOG0464|consen   36 KIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDF  115 (753)
T ss_pred             hhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceE
Confidence            45689999999999999999887421                00011112334433   345566899999999997441


Q ss_pred             cchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCc
Q 029158           81 YAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFP  147 (198)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~  147 (198)
                      .             .+..+-.+..|+++.|+|++.|...+..-++.+..+.+.|-++.+||+|....
T Consensus       116 ~-------------leverclrvldgavav~dasagve~qtltvwrqadk~~ip~~~finkmdk~~a  169 (753)
T KOG0464|consen  116 R-------------LEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQADKFKIPAHCFINKMDKLAA  169 (753)
T ss_pred             E-------------EEHHHHHHHhcCeEEEEeccCCcccceeeeehhccccCCchhhhhhhhhhhhh
Confidence            1             01111122379999999999999999999999999999999999999998754

>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]

Probab=98.76  E-value=9.4e-09  Score=82.87  Aligned_cols=119  Identities=16%  Similarity=0.209  Sum_probs=85.7

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCc-cceeecC---------------CCCceeE---EEEEEeCCceEEEeCCCCcc
Q 029158           19 PDLPEIAFAGRSNVGKSSMLNALTRQW-GVVRTSD---------------KPGLTQT---INFFKLGTKLCLVDLPGYGF   79 (198)
Q Consensus        19 ~~~~~v~~vG~~~~GKSsli~~l~~~~-~~~~~~~---------------~~~~t~~---~~~~~~~~~~~iiDtpG~~~   79 (198)
                      +...+|.+.-.-.+||||+-++++.-. .....+.               ..++|.+   ..+...+.++.+|||||+.+
T Consensus        37 ~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvD  116 (721)
T KOG0465|consen   37 NKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVD  116 (721)
T ss_pred             hhhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCcee
Confidence            456788888889999999999887421 0011111               1122322   12333478999999999733


Q ss_pred             ccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHH
Q 029158           80 AYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDV  150 (198)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~  150 (198)
                                   +.-+..+.+...|++++|+|+..|...+...+.+++.+.++|-|..+||+|.......
T Consensus       117 -------------FT~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ~~ry~vP~i~FiNKmDRmGa~~~  174 (721)
T KOG0465|consen  117 -------------FTFEVERALRVLDGAVLVLDAVAGVESQTETVWRQMKRYNVPRICFINKMDRMGASPF  174 (721)
T ss_pred             -------------EEEEehhhhhhccCeEEEEEcccceehhhHHHHHHHHhcCCCeEEEEehhhhcCCChH
Confidence                         2223444555689999999999999999999999999999999999999999876543

>cd01854 YjeQ_engC YjeQ/EngC

Probab=98.76  E-value=4e-08  Score=74.82  Aligned_cols=83  Identities=23%  Similarity=0.298  Sum_probs=57.7

Q ss_pred             cccceEEEEEeCCCCC-CcCc-HHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEeccCCC
Q 029158          102 VSLKRVCLLIDTKWGV-KPRD-HELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSG  179 (198)
Q Consensus       102 ~~~d~vi~v~d~~~~~-~~~~-~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~~  179 (198)
                      ..+|.+++|+|+.++. .... ..++..+...++|+++|+||+|+.+..+....    .....   ..+.+++++||+++
T Consensus        77 anvD~vllV~d~~~p~~s~~~ldr~L~~~~~~~ip~iIVlNK~DL~~~~~~~~~----~~~~~---~~g~~v~~vSA~~g  149 (287)
T cd01854          77 ANVDQLVIVVSLNEPFFNPRLLDRYLVAAEAAGIEPVIVLTKADLLDDEEEELE----LVEAL---ALGYPVLAVSAKTG  149 (287)
T ss_pred             EeCCEEEEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEEEHHHCCChHHHHHH----HHHHH---hCCCeEEEEECCCC
Confidence            3489999999998754 2222 23455566668999999999999765321111    11111   12478999999999


Q ss_pred             CChHHHHHHHHH
Q 029158          180 AGIRSLRTVLSK  191 (198)
Q Consensus       180 ~gi~~l~~~i~~  191 (198)
                      .|+++|..++..
T Consensus       150 ~gi~~L~~~L~~  161 (287)
T cd01854         150 EGLDELREYLKG  161 (287)
T ss_pred             ccHHHHHhhhcc
Confidence            999999988764

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>KOG2743 consensus Cobalamin synthesis protein [Coenzyme transport and metabolism]

Probab=98.73  E-value=3.7e-07  Score=68.13  Aligned_cols=139  Identities=17%  Similarity=0.184  Sum_probs=84.1

Q ss_pred             CCCCCCCeEEEEcCCCCCHHHHHHHHhcCc---cceeecCCCCceeEE---------------------------EEE--
Q 029158           16 FPAPDLPEIAFAGRSNVGKSSMLNALTRQW---GVVRTSDKPGLTQTI---------------------------NFF--   63 (198)
Q Consensus        16 ~~~~~~~~v~~vG~~~~GKSsli~~l~~~~---~~~~~~~~~~~t~~~---------------------------~~~--   63 (198)
                      .+..+.|.-.+.|.-|||||||+|+++..+   +++..-+..+-..++                           ++.  
T Consensus        52 ~~~~rIPvtIITGyLGaGKtTLLn~Il~~~hgKRIAVIlNEfGes~die~sl~~~~~gg~lyEewv~L~NGClCCtVk~~  131 (391)
T KOG2743|consen   52 SLGARIPVTIITGYLGAGKTTLLNYILTGQHGKRIAVILNEFGESSDIEKSLAVSQEGGELYEEWVELRNGCLCCTVKDN  131 (391)
T ss_pred             CCCCccceEEEEecccCChHHHHHHHHccCCCceEEEEhhhcccchhhhHHHHhccccchHHHHHHHhcCCeEEEEecch
Confidence            355677888999999999999999999643   444444443321110                           010  


Q ss_pred             -----------EeCCceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCc--------HHH
Q 029158           64 -----------KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD--------HEL  124 (198)
Q Consensus        64 -----------~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~--------~~~  124 (198)
                                 .......+++|.|+.....-.  .   -.+..+-+...-..|+|+-|+|+.+.....+        .+.
T Consensus       132 gvraie~lvqkkGkfD~IllETTGlAnPaPia--~---~Fw~dd~l~sdVkLDGIVTvvD~K~~~~~Lde~k~~g~i~EA  206 (391)
T KOG2743|consen  132 GVRAIENLVQKKGKFDHILLETTGLANPAPIA--S---MFWLDDELGSDVKLDGIVTVVDAKHILKHLDEEKPDGLINEA  206 (391)
T ss_pred             HHHHHHHHHhcCCCcceEEEeccCCCCcHHHH--H---HHhhhhhhcCceeeeeEEEEEehhhHHhhhcccCcccchHHH
Confidence                       112357899999986542111  1   1222333344445899999999987322111        112


Q ss_pred             HHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHH
Q 029158          125 ISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLK  162 (198)
Q Consensus       125 ~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~  162 (198)
                      ..++.   ..--+++||.|++..+++....+.+.+...
T Consensus       207 ~~QiA---~AD~II~NKtDli~~e~~~~l~q~I~~INs  241 (391)
T KOG2743|consen  207 TRQIA---LADRIIMNKTDLVSEEEVKKLRQRIRSINS  241 (391)
T ss_pred             HHHHh---hhheeeeccccccCHHHHHHHHHHHHHhhh
Confidence            22222   333689999999999888777777766544

>PRK13796 GTPase YqeH; Provisional

Probab=98.68  E-value=3.5e-07  Score=71.93  Aligned_cols=94  Identities=14%  Similarity=0.013  Sum_probs=57.8

Q ss_pred             Hhcccccc-eEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHH-HHHHHHHHHHHHHhccCCCCCcEEec
Q 029158           98 VSTRVSLK-RVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPID-VARRAMQIEESLKANNSLVQPVMMVS  175 (198)
Q Consensus        98 ~~~~~~~d-~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~S  175 (198)
                      +......| .|++|+|+.+. .......+.... .+.|+++|+||+|+..... .++..+.++............++.+|
T Consensus        63 l~~i~~~~~lIv~VVD~~D~-~~s~~~~L~~~~-~~kpviLViNK~DLl~~~~~~~~i~~~l~~~~k~~g~~~~~v~~vS  140 (365)
T PRK13796         63 LNGIGDSDALVVNVVDIFDF-NGSWIPGLHRFV-GNNPVLLVGNKADLLPKSVKKNKVKNWLRQEAKELGLRPVDVVLIS  140 (365)
T ss_pred             HHhhcccCcEEEEEEECccC-CCchhHHHHHHh-CCCCEEEEEEchhhCCCccCHHHHHHHHHHHHHhcCCCcCcEEEEE
Confidence            33333344 89999999763 322222233222 2689999999999975321 22222333333322211123689999


Q ss_pred             cCCCCChHHHHHHHHHhh
Q 029158          176 SKSGAGIRSLRTVLSKIA  193 (198)
Q Consensus       176 a~~~~gi~~l~~~i~~~~  193 (198)
                      |+++.|++++++.|.+..
T Consensus       141 Ak~g~gI~eL~~~I~~~~  158 (365)
T PRK13796        141 AQKGHGIDELLEAIEKYR  158 (365)
T ss_pred             CCCCCCHHHHHHHHHHhc
Confidence            999999999999997764

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=98.68  E-value=1.1e-07  Score=68.34  Aligned_cols=117  Identities=24%  Similarity=0.319  Sum_probs=61.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCc-----cceeecCC--C-Cce---------eEEEEEE--------------------e
Q 029158           23 EIAFAGRSNVGKSSMLNALTRQW-----GVVRTSDK--P-GLT---------QTINFFK--------------------L   65 (198)
Q Consensus        23 ~v~~vG~~~~GKSsli~~l~~~~-----~~~~~~~~--~-~~t---------~~~~~~~--------------------~   65 (198)
                      .++++|++|+||||.+-.|....     ++..++-.  . +..         -.+.++.                    .
T Consensus         3 vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~~~   82 (196)
T PF00448_consen    3 VIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFRKK   82 (196)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHhhc
Confidence            58999999999999998877431     11111111  0 000         0011111                    1


Q ss_pred             CCceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCC
Q 029158           66 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV  145 (198)
Q Consensus        66 ~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~  145 (198)
                      +.++.++||||.....  ....+.    +..++... ..+-+++|++++.+  ..+..........-.+-=+++||.|..
T Consensus        83 ~~D~vlIDT~Gr~~~d--~~~~~e----l~~~~~~~-~~~~~~LVlsa~~~--~~~~~~~~~~~~~~~~~~lIlTKlDet  153 (196)
T PF00448_consen   83 GYDLVLIDTAGRSPRD--EELLEE----LKKLLEAL-NPDEVHLVLSATMG--QEDLEQALAFYEAFGIDGLILTKLDET  153 (196)
T ss_dssp             TSSEEEEEE-SSSSTH--HHHHHH----HHHHHHHH-SSSEEEEEEEGGGG--GHHHHHHHHHHHHSSTCEEEEESTTSS
T ss_pred             CCCEEEEecCCcchhh--HHHHHH----HHHHhhhc-CCccceEEEecccC--hHHHHHHHHHhhcccCceEEEEeecCC
Confidence            3579999999964321  111112    22233322 36789999999863  233332222222222345779999997


Q ss_pred             CcH
Q 029158          146 FPI  148 (198)
Q Consensus       146 ~~~  148 (198)
                      ...
T Consensus       154 ~~~  156 (196)
T PF00448_consen  154 ARL  156 (196)
T ss_dssp             STT
T ss_pred             CCc
Confidence            643

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>PRK12288 GTPase RsgA; Reviewed

Probab=98.66  E-value=3.1e-07  Score=71.53  Aligned_cols=87  Identities=17%  Similarity=0.166  Sum_probs=57.8

Q ss_pred             cccceEEEEEeCCCCCCcCc-HHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEeccCCCC
Q 029158          102 VSLKRVCLLIDTKWGVKPRD-HELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGA  180 (198)
Q Consensus       102 ~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~~~  180 (198)
                      .++|.+++|.+....+.... ..++..+...++|.++|+||+|+.+..+.... ....+.+.   ..+.+++++||++++
T Consensus       119 ANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~~~i~~VIVlNK~DL~~~~~~~~~-~~~~~~y~---~~g~~v~~vSA~tg~  194 (347)
T PRK12288        119 ANIDQIVIVSAVLPELSLNIIDRYLVACETLGIEPLIVLNKIDLLDDEGRAFV-NEQLDIYR---NIGYRVLMVSSHTGE  194 (347)
T ss_pred             EEccEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCEEEEEECccCCCcHHHHHH-HHHHHHHH---hCCCeEEEEeCCCCc
Confidence            45888888888754333222 22344455567999999999999865432221 12222222   224789999999999


Q ss_pred             ChHHHHHHHHHh
Q 029158          181 GIRSLRTVLSKI  192 (198)
Q Consensus       181 gi~~l~~~i~~~  192 (198)
                      |+++|+++|...
T Consensus       195 GideL~~~L~~k  206 (347)
T PRK12288        195 GLEELEAALTGR  206 (347)
T ss_pred             CHHHHHHHHhhC
Confidence            999999998754

>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]

Probab=98.63  E-value=2.4e-08  Score=74.73  Aligned_cols=63  Identities=29%  Similarity=0.410  Sum_probs=49.9

Q ss_pred             CCCCCeEEEEcCCCCCHHHHHHHHhcC----ccceeecCCCCceeEEEE---EEeCCceEEEeCCCCccc
Q 029158           18 APDLPEIAFAGRSNVGKSSMLNALTRQ----WGVVRTSDKPGLTQTINF---FKLGTKLCLVDLPGYGFA   80 (198)
Q Consensus        18 ~~~~~~v~~vG~~~~GKSsli~~l~~~----~~~~~~~~~~~~t~~~~~---~~~~~~~~iiDtpG~~~~   80 (198)
                      .+..+.+.++|.||+|||||+|++...    .+.+.++.+++.|+.+..   ......+.++||||+.-.
T Consensus       140 ~~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp~vy~iDTPGil~P  209 (335)
T KOG2485|consen  140 LNSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRPPVYLIDTPGILVP  209 (335)
T ss_pred             cCCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccCCceEEecCCCcCCC
Confidence            346789999999999999999987642    256788999999988652   223677999999997654

>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]

Probab=98.62  E-value=1.6e-09  Score=74.86  Aligned_cols=156  Identities=13%  Similarity=0.131  Sum_probs=95.6

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCcee---E---EEEEE-eCCceEEEeCCCCccccchhHHHHHHH
Q 029158           19 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQ---T---INFFK-LGTKLCLVDLPGYGFAYAKEEVKDAWE   91 (198)
Q Consensus        19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~---~---~~~~~-~~~~~~iiDtpG~~~~~~~~~~~~~~~   91 (198)
                      .+..+++++|.-|+|||+++.+.....   +...+..|..   .   .++.. ...++++||..|.          +++.
T Consensus        23 ~hL~k~lVig~~~vgkts~i~ryv~~n---fs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQ----------erfg   89 (229)
T KOG4423|consen   23 EHLFKVLVIGDLGVGKTSSIKRYVHQN---FSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQ----------ERFG   89 (229)
T ss_pred             hhhhhhheeeeccccchhHHHHHHHHH---HHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhh----------hhhc
Confidence            356789999999999999999988652   1111111110   0   11111 1256889999994          2334


Q ss_pred             HHHHHHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHh-----h--CCcEEEEEeccCCCCcHHHHHHHHHHHHHHHh
Q 029158           92 ELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER-----S--QTKYQVVLTKTDTVFPIDVARRAMQIEESLKA  163 (198)
Q Consensus        92 ~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~-----~--~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~  163 (198)
                      .+.+-|+..   +.+.++|+|.++...... ..+.+.+..     .  ..|+++..||||....... +....+.+....
T Consensus        90 ~mtrVyyke---a~~~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~-~~~~~~d~f~ke  165 (229)
T KOG4423|consen   90 NMTRVYYKE---AHGAFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKN-EATRQFDNFKKE  165 (229)
T ss_pred             ceEEEEecC---CcceEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhh-hhHHHHHHHHhc
Confidence            444445444   778888999887544433 233333321     1  3678999999998654321 111222222222


Q ss_pred             ccCCCCCcEEeccCCCCChHHHHHHHHHhh
Q 029158          164 NNSLVQPVMMVSSKSGAGIRSLRTVLSKIA  193 (198)
Q Consensus       164 ~~~~~~~v~~~Sa~~~~gi~~l~~~i~~~~  193 (198)
                        ......+++|+|..-+++|.-+.+.+..
T Consensus       166 --ngf~gwtets~Kenkni~Ea~r~lVe~~  193 (229)
T KOG4423|consen  166 --NGFEGWTETSAKENKNIPEAQRELVEKI  193 (229)
T ss_pred             --cCccceeeeccccccChhHHHHHHHHHH
Confidence              2256799999999999999998887753

>KOG2484 consensus GTPase [General function prediction only]

Probab=98.60  E-value=3.3e-08  Score=76.18  Aligned_cols=60  Identities=33%  Similarity=0.518  Sum_probs=54.0

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEeCCceEEEeCCCCccc
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFA   80 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~iiDtpG~~~~   80 (198)
                      ...+|.++|.|++||||+||+|... ....+++.++.|+..+.-+.+.++.++|.||+...
T Consensus       251 ~sIrvGViG~PNVGKSSvINsL~~~-k~C~vg~~pGvT~smqeV~Ldk~i~llDsPgiv~~  310 (435)
T KOG2484|consen  251 TSIRVGIIGYPNVGKSSVINSLKRR-KACNVGNVPGVTRSMQEVKLDKKIRLLDSPGIVPP  310 (435)
T ss_pred             cceEeeeecCCCCChhHHHHHHHHh-ccccCCCCccchhhhhheeccCCceeccCCceeec
Confidence            4568999999999999999999998 67889999999999998899999999999997543

>KOG1534 consensus Putative transcription factor FET5 [Transcription]

Probab=98.60  E-value=2.7e-07  Score=65.56  Aligned_cols=125  Identities=13%  Similarity=0.162  Sum_probs=68.8

Q ss_pred             CceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHH------HHHHHHhhCCcEEEEEe
Q 029158           67 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHE------LISLMERSQTKYQVVLT  140 (198)
Q Consensus        67 ~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~------~~~~~~~~~~p~iiv~n  140 (198)
                      ..+.++|+||..+-+..-.   ....+++..-+...++ .++|++|+.- +....+.      .+...-...+|.|=|++
T Consensus        98 ddylifDcPGQIELytH~p---Vm~~iv~hl~~~~F~~-c~Vylldsqf-~vD~~KfiSG~lsAlsAMi~lE~P~INvls  172 (273)
T KOG1534|consen   98 DDYLIFDCPGQIELYTHLP---VMPQIVEHLKQWNFNV-CVVYLLDSQF-LVDSTKFISGCLSALSAMISLEVPHINVLS  172 (273)
T ss_pred             CCEEEEeCCCeeEEeecCh---hHHHHHHHHhcccCce-eEEEEeccch-hhhHHHHHHHHHHHHHHHHHhcCcchhhhh
Confidence            4789999999766332111   1133333333322122 3778888753 1222221      12222234799999999


Q ss_pred             ccCCCCcHHHHHHH-----------------------HHHHHHHHh-cc-CCCCCcEEeccCCCCChHHHHHHHHHhhcc
Q 029158          141 KTDTVFPIDVARRA-----------------------MQIEESLKA-NN-SLVQPVMMVSSKSGAGIRSLRTVLSKIARF  195 (198)
Q Consensus       141 K~Dl~~~~~~~~~~-----------------------~~~~~~~~~-~~-~~~~~v~~~Sa~~~~gi~~l~~~i~~~~~~  195 (198)
                      |+|+......++..                       ..+.+.... .. ..-+.++|+.+.+.+.++.++..|-...++
T Consensus       173 KMDLlk~~~k~~l~~Fl~~d~~~l~~~~~~~~~s~Kf~~L~~~i~~~v~d~~Mv~FlPl~~~~eeSi~~iL~~ID~aiQy  252 (273)
T KOG1534|consen  173 KMDLLKDKNKKELERFLNPDEYLLLEDSEINLRSPKFKKLTKCIAQLVDDYSMVNFLPLDSSDEESINIILSYIDDAIQY  252 (273)
T ss_pred             HHHHhhhhhHHHHHHhcCCchhhhhcccccccccHHHHHHHHHHHHHhccccceeeeecCCCCHHHHHHHHHHHHHHHHh
Confidence            99998763211110                       011111111 10 113678899999999999999988877765


Q ss_pred             c
Q 029158          196 A  196 (198)
Q Consensus       196 ~  196 (198)
                      .
T Consensus       253 ~  253 (273)
T KOG1534|consen  253 G  253 (273)
T ss_pred             c
Confidence            3

>PRK01889 GTPase RsgA; Reviewed

Probab=98.58  E-value=5e-07  Score=70.83  Aligned_cols=83  Identities=23%  Similarity=0.294  Sum_probs=59.9

Q ss_pred             cccceEEEEEeCCCCCCcCc-HHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEeccCCCC
Q 029158          102 VSLKRVCLLIDTKWGVKPRD-HELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGA  180 (198)
Q Consensus       102 ~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~~~  180 (198)
                      .++|.+++|+++..++.... ..++..+...+++.++|+||+||.+..+  ...+.+...     ..+.+++++|++++.
T Consensus       111 ANvD~vliV~s~~p~~~~~~ldr~L~~a~~~~i~piIVLNK~DL~~~~~--~~~~~~~~~-----~~g~~Vi~vSa~~g~  183 (356)
T PRK01889        111 ANVDTVFIVCSLNHDFNLRRIERYLALAWESGAEPVIVLTKADLCEDAE--EKIAEVEAL-----APGVPVLAVSALDGE  183 (356)
T ss_pred             EeCCEEEEEEecCCCCChhHHHHHHHHHHHcCCCEEEEEEChhcCCCHH--HHHHHHHHh-----CCCCcEEEEECCCCc
Confidence            45899999999975544433 3456666677899999999999986421  222333222     336899999999999


Q ss_pred             ChHHHHHHHHH
Q 029158          181 GIRSLRTVLSK  191 (198)
Q Consensus       181 gi~~l~~~i~~  191 (198)
                      |+++|.+++..
T Consensus       184 gl~~L~~~L~~  194 (356)
T PRK01889        184 GLDVLAAWLSG  194 (356)
T ss_pred             cHHHHHHHhhc
Confidence            99999999853

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.58  E-value=2.6e-07  Score=72.33  Aligned_cols=25  Identities=24%  Similarity=0.311  Sum_probs=21.2

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      ....++++|++|+||||++..|...
T Consensus       136 ~g~ii~lvGptGvGKTTtiakLA~~  160 (374)
T PRK14722        136 RGGVFALMGPTGVGKTTTTAKLAAR  160 (374)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHH
Confidence            3457899999999999999998753

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=98.55  E-value=8.6e-07  Score=62.41  Aligned_cols=56  Identities=16%  Similarity=0.121  Sum_probs=44.0

Q ss_pred             ceEEEEEeCCCCCCcCcHHHHHH--HHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHH
Q 029158          105 KRVCLLIDTKWGVKPRDHELISL--MERSQTKYQVVLTKTDTVFPIDVARRAMQIEES  160 (198)
Q Consensus       105 d~vi~v~d~~~~~~~~~~~~~~~--~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~  160 (198)
                      |++++|+|+..++...+.++.+.  +...+.|+|+|+||+|+.++....++.+.+++.
T Consensus         1 DvVl~VvDar~p~~~~~~~i~~~~~l~~~~kp~IlVlNK~DL~~~~~l~~~~~~~~~~   58 (172)
T cd04178           1 DVILEVLDARDPLGCRCPQVEEAVLQAGGNKKLVLVLNKIDLVPKENVEKWLKYLRRE   58 (172)
T ss_pred             CEEEEEEECCCCCCCCCHHHHHHHHhccCCCCEEEEEehhhcCCHHHHHHHHHHHHhh
Confidence            78999999998877777777777  444579999999999998877666666665543

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.53  E-value=1.3e-06  Score=76.69  Aligned_cols=156  Identities=17%  Similarity=0.167  Sum_probs=86.6

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCC----ceeEEEEEEeCCceEEEeCCCCcccc--chhHHHHHHHHH
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPG----LTQTINFFKLGTKLCLVDLPGYGFAY--AKEEVKDAWEEL   93 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~----~t~~~~~~~~~~~~~iiDtpG~~~~~--~~~~~~~~~~~~   93 (198)
                      ..|-.+++|++|+||||++..-.-+..+.......+    -|+... ......-++|||.|---..  ........|..+
T Consensus       124 eLPWy~viG~pgsGKTtal~~sgl~Fpl~~~~~~~~~~~~gT~~cd-wwf~deaVlIDtaGry~~q~s~~~~~~~~W~~f  202 (1188)
T COG3523         124 ELPWYMVIGPPGSGKTTALLNSGLQFPLAEQMGALGLAGPGTRNCD-WWFTDEAVLIDTAGRYITQDSADEVDRAEWLGF  202 (1188)
T ss_pred             cCCceEEecCCCCCcchHHhcccccCcchhhhccccccCCCCcccC-cccccceEEEcCCcceecccCcchhhHHHHHHH
Confidence            467889999999999999887654321111111111    133333 2335668999999932211  223345556655


Q ss_pred             HHHHHh--cccccceEEEEEeCCCCCCcCcHHH---H-------HHHHh---hCCcEEEEEeccCCCCcHHHHHHHHHHH
Q 029158           94 VKEYVS--TRVSLKRVCLLIDTKWGVKPRDHEL---I-------SLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIE  158 (198)
Q Consensus        94 ~~~~~~--~~~~~d~vi~v~d~~~~~~~~~~~~---~-------~~~~~---~~~p~iiv~nK~Dl~~~~~~~~~~~~~~  158 (198)
                      +.-...  ...-.++|++.+|..+-......+-   .       +.+..   ...|+++++||.|+...-  ++....+.
T Consensus       203 L~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dll~GF--~efF~~l~  280 (1188)
T COG3523         203 LGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADLLPGF--EEFFGSLN  280 (1188)
T ss_pred             HHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEecccccccH--HHHHhccC
Confidence            443333  3345899999999877333222111   1       22222   268999999999998743  22222222


Q ss_pred             -HHHHhccCCCCCcEEeccCCCCC
Q 029158          159 -ESLKANNSLVQPVMMVSSKSGAG  181 (198)
Q Consensus       159 -~~~~~~~~~~~~v~~~Sa~~~~g  181 (198)
                       +.....   ....|+.++....+
T Consensus       281 ~~~r~qv---wG~tf~~~~~~~~~  301 (1188)
T COG3523         281 KEEREQV---WGVTFPLDARRNAN  301 (1188)
T ss_pred             HHHHhhh---ceeccccccccccc
Confidence             111111   23466777776633

>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins

Probab=98.52  E-value=3.3e-06  Score=68.12  Aligned_cols=59  Identities=14%  Similarity=0.035  Sum_probs=41.4

Q ss_pred             CCcEEEEEeccCCCCcH---------HHHHHHHHHHHHHHhccCCCCCcEEeccCCCCChHHHHHHHHHhh
Q 029158          132 QTKYQVVLTKTDTVFPI---------DVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA  193 (198)
Q Consensus       132 ~~p~iiv~nK~Dl~~~~---------~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~~~gi~~l~~~i~~~~  193 (198)
                      ++|++||++|+|....-         ..+-+.+.++..+..+   +...|++|++...+++-|+.+|...+
T Consensus       196 Gipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~y---GAsL~yts~~~~~n~~~L~~yi~h~l  263 (472)
T PF05783_consen  196 GIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKY---GASLIYTSVKEEKNLDLLYKYILHRL  263 (472)
T ss_pred             CcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhc---CCeEEEeeccccccHHHHHHHHHHHh
Confidence            46999999999986421         1222333344444333   68899999999999999999887654

The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].

>cd03114 ArgK-like The function of this protein family is unkown

Probab=98.50  E-value=1.5e-06  Score=59.70  Aligned_cols=20  Identities=35%  Similarity=0.642  Sum_probs=18.0

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 029158           24 IAFAGRSNVGKSSMLNALTR   43 (198)
Q Consensus        24 v~~vG~~~~GKSsli~~l~~   43 (198)
                      +.++|+.|+||||++..+..
T Consensus         2 i~~~G~~GsGKTt~~~~l~~   21 (148)
T cd03114           2 IGITGVPGAGKSTLIDALIT   21 (148)
T ss_pred             EEEECCCCCcHHHHHHHHHH
Confidence            78999999999999998774

The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.

>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A

Probab=98.49  E-value=1.9e-06  Score=67.51  Aligned_cols=163  Identities=15%  Similarity=0.150  Sum_probs=86.5

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCccceeec--------------C----CCCceeE-------EE--EE-EeCCceEEE
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTS--------------D----KPGLTQT-------IN--FF-KLGTKLCLV   72 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~--------------~----~~~~t~~-------~~--~~-~~~~~~~ii   72 (198)
                      -.=+.+|||..+||||||.++...-.++...              +    ..-||.+       ..  +. ....+++++
T Consensus        17 dIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kVRLi   96 (492)
T PF09547_consen   17 DIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKVRLI   96 (492)
T ss_pred             ceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEEEEE
Confidence            3458999999999999999988431000000              0    0112222       11  11 124689999


Q ss_pred             eCCCCcc-cc------------chhHHHHHHHHHHHHHHhccc-----ccceEEEEEeCCCC-CC-----cCcHHHHHHH
Q 029158           73 DLPGYGF-AY------------AKEEVKDAWEELVKEYVSTRV-----SLKRVCLLIDTKWG-VK-----PRDHELISLM  128 (198)
Q Consensus        73 DtpG~~~-~~------------~~~~~~~~~~~~~~~~~~~~~-----~~d~vi~v~d~~~~-~~-----~~~~~~~~~~  128 (198)
                      |+-|+.= ..            ..+|....+..-.+.-+...+     .--++++..|.+-+ ++     +.+.+..+.|
T Consensus        97 DCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~EL  176 (492)
T PF09547_consen   97 DCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVIEEL  176 (492)
T ss_pred             eecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHHHHH
Confidence            9998611 00            111111111111111111111     12245555666542 12     2335577888


Q ss_pred             HhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEeccCC--CCChHHHHHHHH
Q 029158          129 ERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKS--GAGIRSLRTVLS  190 (198)
Q Consensus       129 ~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~--~~gi~~l~~~i~  190 (198)
                      ...++|+++++|=.+-.+++. .+..+.+.+..      ++|++++++-.  .+.+..+++.+.
T Consensus       177 k~igKPFvillNs~~P~s~et-~~L~~eL~ekY------~vpVlpvnc~~l~~~DI~~Il~~vL  233 (492)
T PF09547_consen  177 KEIGKPFVILLNSTKPYSEET-QELAEELEEKY------DVPVLPVNCEQLREEDITRILEEVL  233 (492)
T ss_pred             HHhCCCEEEEEeCCCCCCHHH-HHHHHHHHHHh------CCcEEEeehHHcCHHHHHHHHHHHH
Confidence            888999999999988766543 33444444443      48999998854  445555555443

It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=98.47  E-value=1.9e-06  Score=69.03  Aligned_cols=115  Identities=21%  Similarity=0.239  Sum_probs=61.9

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcC-----ccceeecCCC--Cce----------eEEEEEE------------------
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQ-----WGVVRTSDKP--GLT----------QTINFFK------------------   64 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~-----~~~~~~~~~~--~~t----------~~~~~~~------------------   64 (198)
                      ....|+++|++|+||||++..|...     ..+..+....  ...          ....++.                  
T Consensus        94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~~  173 (437)
T PRK00771         94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEKF  173 (437)
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHh
Confidence            3557999999999999999887632     1111111100  000          0000000                  


Q ss_pred             eCCceEEEeCCCCccccchhHHHHHHHHHHHHHH--hcccccceEEEEEeCCCCCCcCcHHHHHHHHhh--CCc-EEEEE
Q 029158           65 LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV--STRVSLKRVCLLIDTKWGVKPRDHELISLMERS--QTK-YQVVL  139 (198)
Q Consensus        65 ~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~--~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~--~~p-~iiv~  139 (198)
                      ....+.++||||....   +      ..++.++.  .....+|.+++|+|+..+     .+.+..++..  ..+ .-+|+
T Consensus       174 ~~~DvVIIDTAGr~~~---d------~~lm~El~~l~~~~~pdevlLVvda~~g-----q~av~~a~~F~~~l~i~gvIl  239 (437)
T PRK00771        174 KKADVIIVDTAGRHAL---E------EDLIEEMKEIKEAVKPDEVLLVIDATIG-----QQAKNQAKAFHEAVGIGGIII  239 (437)
T ss_pred             hcCCEEEEECCCcccc---h------HHHHHHHHHHHHHhcccceeEEEecccc-----HHHHHHHHHHHhcCCCCEEEE
Confidence            1247999999995331   1      11121111  112247889999999764     2333333332  233 35789


Q ss_pred             eccCCCCcH
Q 029158          140 TKTDTVFPI  148 (198)
Q Consensus       140 nK~Dl~~~~  148 (198)
                      ||.|.....
T Consensus       240 TKlD~~a~~  248 (437)
T PRK00771        240 TKLDGTAKG  248 (437)
T ss_pred             ecccCCCcc
Confidence            999986543

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=98.43  E-value=1.2e-05  Score=55.04  Aligned_cols=156  Identities=13%  Similarity=0.089  Sum_probs=78.3

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCC---CCceeEEEEEEeCCceEEEeCC-CCccc-----cchhH----
Q 029158           19 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDK---PGLTQTINFFKLGTKLCLVDLP-GYGFA-----YAKEE----   85 (198)
Q Consensus        19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~---~~~t~~~~~~~~~~~~~iiDtp-G~~~~-----~~~~~----   85 (198)
                      ....+|++.|+||+||||++..+...-   ...++   ...|..+........|.++|+. |=...     .....    
T Consensus         3 ~~~mki~ITG~PGvGKtTl~~ki~e~L---~~~g~kvgGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY   79 (179)
T COG1618           3 KMAMKIFITGRPGVGKTTLVLKIAEKL---REKGYKVGGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKY   79 (179)
T ss_pred             CcceEEEEeCCCCccHHHHHHHHHHHH---HhcCceeeeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceE
Confidence            356789999999999999999887431   00101   1122222222233557777776 21000     00000    


Q ss_pred             --HHHHHHHHHHHHHh-cccccceEEEEEeCCCCCCc---CcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHH
Q 029158           86 --VKDAWEELVKEYVS-TRVSLKRVCLLIDTKWGVKP---RDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEE  159 (198)
Q Consensus        86 --~~~~~~~~~~~~~~-~~~~~d~vi~v~d~~~~~~~---~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~  159 (198)
                        .-+.+++.....++ +...+|+++  +|--....-   ...+.++.+...+.|+|.++.+-+.-+      ..+.+..
T Consensus        80 ~V~v~~le~i~~~al~rA~~~aDvII--IDEIGpMElks~~f~~~ve~vl~~~kpliatlHrrsr~P------~v~~ik~  151 (179)
T COG1618          80 GVNVEGLEEIAIPALRRALEEADVII--IDEIGPMELKSKKFREAVEEVLKSGKPLIATLHRRSRHP------LVQRIKK  151 (179)
T ss_pred             EeeHHHHHHHhHHHHHHHhhcCCEEE--EecccchhhccHHHHHHHHHHhcCCCcEEEEEecccCCh------HHHHhhh
Confidence              11222322222222 223356554  554332222   234445555566899999999886521      1122222


Q ss_pred             HHHhccCCCCCcEEeccCCCCChHHHHHHHHHhhcc
Q 029158          160 SLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIARF  195 (198)
Q Consensus       160 ~~~~~~~~~~~v~~~Sa~~~~gi~~l~~~i~~~~~~  195 (198)
                      .       +.-+++   .+.+|-+.+...|...+..
T Consensus       152 ~-------~~v~v~---lt~~NR~~i~~~Il~~L~~  177 (179)
T COG1618         152 L-------GGVYVF---LTPENRNRILNEILSVLKG  177 (179)
T ss_pred             c-------CCEEEE---EccchhhHHHHHHHHHhcc
Confidence            1       111222   5666667888887776653

>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]

Probab=98.43  E-value=6.1e-06  Score=64.60  Aligned_cols=117  Identities=22%  Similarity=0.252  Sum_probs=64.0

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCc-------cceeecC--C-CCce-----------eEEEEEE------------eCC
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQW-------GVVRTSD--K-PGLT-----------QTINFFK------------LGT   67 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~~-------~~~~~~~--~-~~~t-----------~~~~~~~------------~~~   67 (198)
                      ...|++|||+|+||||-+-.|....       +++.++-  | .+--           .+.....            .+.
T Consensus       203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~  282 (407)
T COG1419         203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDC  282 (407)
T ss_pred             CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcC
Confidence            6679999999999999888776542       1111110  0 0000           0011111            135


Q ss_pred             ceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHhhCCcE-EEEEeccCCC
Q 029158           68 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERSQTKY-QVVLTKTDTV  145 (198)
Q Consensus        68 ~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~~~~p~-iiv~nK~Dl~  145 (198)
                      ++.++||.|.....      ...-.-+..|+... ...-+++|++++.  ...+ .++++....  .|+ =+++||.|..
T Consensus       283 d~ILVDTaGrs~~D------~~~i~el~~~~~~~-~~i~~~Lvlsat~--K~~dlkei~~~f~~--~~i~~~I~TKlDET  351 (407)
T COG1419         283 DVILVDTAGRSQYD------KEKIEELKELIDVS-HSIEVYLVLSATT--KYEDLKEIIKQFSL--FPIDGLIFTKLDET  351 (407)
T ss_pred             CEEEEeCCCCCccC------HHHHHHHHHHHhcc-ccceEEEEEecCc--chHHHHHHHHHhcc--CCcceeEEEccccc
Confidence            89999999964421      11123344555555 3445777888864  3333 233444443  333 3678999987


Q ss_pred             CcH
Q 029158          146 FPI  148 (198)
Q Consensus       146 ~~~  148 (198)
                      ..-
T Consensus       352 ~s~  354 (407)
T COG1419         352 TSL  354 (407)
T ss_pred             Cch
Confidence            643

>PRK10867 signal recognition particle protein; Provisional

Probab=98.42  E-value=3.1e-06  Score=67.70  Aligned_cols=23  Identities=22%  Similarity=0.304  Sum_probs=18.8

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHh
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALT   42 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~   42 (198)
                      ....|+++|++|+||||++..|.
T Consensus        99 ~p~vI~~vG~~GsGKTTtaakLA  121 (433)
T PRK10867         99 PPTVIMMVGLQGAGKTTTAGKLA  121 (433)
T ss_pred             CCEEEEEECCCCCcHHHHHHHHH
Confidence            34578999999999999776665

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional

Probab=98.41  E-value=6.2e-06  Score=67.03  Aligned_cols=138  Identities=18%  Similarity=0.214  Sum_probs=70.3

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcC-------ccceeecCCCC-c-----------eeEEEEEE--------------eC
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQ-------WGVVRTSDKPG-L-----------TQTINFFK--------------LG   66 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~-------~~~~~~~~~~~-~-----------t~~~~~~~--------------~~   66 (198)
                      ....|+++|++|+||||++..|...       ..+..+..... .           .....+..              .+
T Consensus       349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~~  428 (559)
T PRK12727        349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLRD  428 (559)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhcc
Confidence            3567999999999999999887742       11222211110 0           00001111              14


Q ss_pred             CceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCC
Q 029158           67 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF  146 (198)
Q Consensus        67 ~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~  146 (198)
                      .++.||||||....   +.  ..... +..+....  ....++|+++....... .+.++.+.. ..+.-+|+||+|...
T Consensus       429 ~DLVLIDTaG~s~~---D~--~l~ee-L~~L~aa~--~~a~lLVLpAtss~~Dl-~eii~~f~~-~~~~gvILTKlDEt~  498 (559)
T PRK12727        429 YKLVLIDTAGMGQR---DR--ALAAQ-LNWLRAAR--QVTSLLVLPANAHFSDL-DEVVRRFAH-AKPQGVVLTKLDETG  498 (559)
T ss_pred             CCEEEecCCCcchh---hH--HHHHH-HHHHHHhh--cCCcEEEEECCCChhHH-HHHHHHHHh-hCCeEEEEecCcCcc
Confidence            68999999997432   11  11111 11111111  23467788887531111 223333333 246779999999865


Q ss_pred             cHHHHHHHHHHHHHHHhccCCCCCcEEecc
Q 029158          147 PIDVARRAMQIEESLKANNSLVQPVMMVSS  176 (198)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa  176 (198)
                      ..  ......+...       ..|+.+++.
T Consensus       499 ~l--G~aLsv~~~~-------~LPI~yvt~  519 (559)
T PRK12727        499 RF--GSALSVVVDH-------QMPITWVTD  519 (559)
T ss_pred             ch--hHHHHHHHHh-------CCCEEEEeC
Confidence            32  2222222221       467777753

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=98.38  E-value=3.8e-06  Score=59.22  Aligned_cols=73  Identities=22%  Similarity=0.168  Sum_probs=40.1

Q ss_pred             CCceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHH-hhCCcEEEEEeccCC
Q 029158           66 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLME-RSQTKYQVVLTKTDT  144 (198)
Q Consensus        66 ~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~-~~~~p~iiv~nK~Dl  144 (198)
                      +.++.++||||....   +  ...... +..+.. ....|.+++|+|+...  ....+...... ..+ ..-+|+||.|.
T Consensus        82 ~~d~viiDt~g~~~~---~--~~~l~~-l~~l~~-~~~~~~~~lVv~~~~~--~~~~~~~~~~~~~~~-~~~viltk~D~  151 (173)
T cd03115          82 NFDVVIVDTAGRLQI---D--ENLMEE-LKKIKR-VVKPDEVLLVVDAMTG--QDAVNQAKAFNEALG-ITGVILTKLDG  151 (173)
T ss_pred             CCCEEEEECcccchh---h--HHHHHH-HHHHHh-hcCCCeEEEEEECCCC--hHHHHHHHHHHhhCC-CCEEEEECCcC
Confidence            456899999996321   0  011111 122222 2337899999998642  22233333332 223 35678899998


Q ss_pred             CCcH
Q 029158          145 VFPI  148 (198)
Q Consensus       145 ~~~~  148 (198)
                      ....
T Consensus       152 ~~~~  155 (173)
T cd03115         152 DARG  155 (173)
T ss_pred             CCCc
Confidence            7643

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.37  E-value=3.3e-06  Score=66.24  Aligned_cols=118  Identities=22%  Similarity=0.315  Sum_probs=63.0

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCc-----cceeecCCCC---ce---------eEEEEE---------------E--eC
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQW-----GVVRTSDKPG---LT---------QTINFF---------------K--LG   66 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~~-----~~~~~~~~~~---~t---------~~~~~~---------------~--~~   66 (198)
                      ...|+++|++|+||||++..|....     .+......+.   ..         ..+.+.               .  .+
T Consensus       241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~  320 (436)
T PRK11889        241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEAR  320 (436)
T ss_pred             CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhccC
Confidence            4689999999999999999987421     1221111110   00         000000               0  13


Q ss_pred             CceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHhhCCcEEEEEeccCCC
Q 029158           67 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERSQTKYQVVLTKTDTV  145 (198)
Q Consensus        67 ~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~~~~p~iiv~nK~Dl~  145 (198)
                      ..+.+|||||-....     .....++ ..++.. ...+.+++|+|++..  ..+ .+.++..... -.-=+++||.|..
T Consensus       321 ~DvVLIDTaGRs~kd-----~~lm~EL-~~~lk~-~~PdevlLVLsATtk--~~d~~~i~~~F~~~-~idglI~TKLDET  390 (436)
T PRK11889        321 VDYILIDTAGKNYRA-----SETVEEM-IETMGQ-VEPDYICLTLSASMK--SKDMIEIITNFKDI-HIDGIVFTKFDET  390 (436)
T ss_pred             CCEEEEeCccccCcC-----HHHHHHH-HHHHhh-cCCCeEEEEECCccC--hHHHHHHHHHhcCC-CCCEEEEEcccCC
Confidence            589999999963311     1112222 223322 235678899998642  222 2333333321 2346899999987


Q ss_pred             CcH
Q 029158          146 FPI  148 (198)
Q Consensus       146 ~~~  148 (198)
                      ...
T Consensus       391 ~k~  393 (436)
T PRK11889        391 ASS  393 (436)
T ss_pred             CCc
Confidence            643

>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily

Probab=98.36  E-value=3.5e-06  Score=57.26  Aligned_cols=126  Identities=13%  Similarity=0.137  Sum_probs=66.3

Q ss_pred             EEEcCCCCCHHHHHHHHhcCccceeecCCCCceeE--EEEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHHHHhccc
Q 029158           25 AFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT--INFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRV  102 (198)
Q Consensus        25 ~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~--~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (198)
                      +.-|..|+||||+...+....  .. .+....-.+  .+....++++.++|||+..+.            .....+.   
T Consensus         4 ~~~~kgg~gkt~~~~~~a~~~--~~-~~~~~~~vd~D~~~~~~~yd~VIiD~p~~~~~------------~~~~~l~---   65 (139)
T cd02038           4 VTSGKGGVGKTNISANLALAL--AK-LGKRVLLLDADLGLANLDYDYIIIDTGAGISD------------NVLDFFL---   65 (139)
T ss_pred             EEcCCCCCcHHHHHHHHHHHH--HH-CCCcEEEEECCCCCCCCCCCEEEEECCCCCCH------------HHHHHHH---
Confidence            455779999999977766431  10 000000001  011111378999999974221            1112222   


Q ss_pred             ccceEEEEEeCCCCCCcCcHHHHHHHHhh--CCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCC
Q 029158          103 SLKRVCLLIDTKWGVKPRDHELISLMERS--QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQP  170 (198)
Q Consensus       103 ~~d~vi~v~d~~~~~~~~~~~~~~~~~~~--~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (198)
                      .+|.++++++.+..........++.+...  ..++.+|+|+++..  .+.++..+.+.+.+........+
T Consensus        66 ~aD~vviv~~~~~~s~~~~~~~l~~l~~~~~~~~~~lVvN~~~~~--~~~~~~~~~~~~~~~r~~~~~l~  133 (139)
T cd02038          66 AADEVIVVTTPEPTSITDAYALIKKLAKQLRVLNFRVVVNRAESP--KEGKKVFKRLSNVSNRFLGLSLD  133 (139)
T ss_pred             hCCeEEEEcCCChhHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCH--HHHHHHHHHHHHHHHHHhCCChh
Confidence            28999999998642222223445555432  46788999999743  33344455555544443333333

It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.

>KOG2423 consensus Nucleolar GTPase [General function prediction only]

Probab=98.36  E-value=1.6e-07  Score=72.53  Aligned_cols=60  Identities=32%  Similarity=0.550  Sum_probs=51.6

Q ss_pred             CCCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEeCCceEEEeCCCCc
Q 029158           18 APDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYG   78 (198)
Q Consensus        18 ~~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~iiDtpG~~   78 (198)
                      +.....|.++|.|++||||+||.|-.. .+..+.+.++-|.-.++...-.++-+||+||+-
T Consensus       304 dkkqISVGfiGYPNvGKSSiINTLR~K-kVCkvAPIpGETKVWQYItLmkrIfLIDcPGvV  363 (572)
T KOG2423|consen  304 DKKQISVGFIGYPNVGKSSIINTLRKK-KVCKVAPIPGETKVWQYITLMKRIFLIDCPGVV  363 (572)
T ss_pred             CccceeeeeecCCCCchHHHHHHHhhc-ccccccCCCCcchHHHHHHHHhceeEecCCCcc
Confidence            445678999999999999999999887 788899999988877766666789999999973

>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=98.36  E-value=1.5e-05  Score=61.62  Aligned_cols=116  Identities=15%  Similarity=0.164  Sum_probs=69.6

Q ss_pred             eCCceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCC--CCCcCc---H------HHHHHHHhh--
Q 029158           65 LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKW--GVKPRD---H------ELISLMERS--  131 (198)
Q Consensus        65 ~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~--~~~~~~---~------~~~~~~~~~--  131 (198)
                      .+.++.++|.+|..      ..+..|-    ..+..   +++|+|++..++  .....+   .      .+.+.+-..  
T Consensus       193 k~~~f~~~DvGGQR------seRrKWi----hcFe~---v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~  259 (354)
T KOG0082|consen  193 KGLKFRMFDVGGQR------SERKKWI----HCFED---VTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKW  259 (354)
T ss_pred             CCCceEEEeCCCcH------HHhhhHH----HhhcC---CCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcc
Confidence            35689999999942      1122222    23333   899999998876  111111   1      222333222  


Q ss_pred             --CCcEEEEEeccCCCCc-----------------HHHHHHHHHHHHHHHhccCCC---CCcEEeccCCCCChHHHHHHH
Q 029158          132 --QTKYQVVLTKTDTVFP-----------------IDVARRAMQIEESLKANNSLV---QPVMMVSSKSGAGIRSLRTVL  189 (198)
Q Consensus       132 --~~p~iiv~nK~Dl~~~-----------------~~~~~~~~~~~~~~~~~~~~~---~~v~~~Sa~~~~gi~~l~~~i  189 (198)
                        +.++|+.+||.|+...                 .+.++....++..+.......   .=+..+.|.+-.+++.+++..
T Consensus       260 F~~tsiiLFLNK~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av  339 (354)
T KOG0082|consen  260 FANTSIILFLNKKDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAV  339 (354)
T ss_pred             cccCcEEEEeecHHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHH
Confidence              5899999999998542                 233455566665555443322   224556888889999998887


Q ss_pred             HHhh
Q 029158          190 SKIA  193 (198)
Q Consensus       190 ~~~~  193 (198)
                      .+.+
T Consensus       340 ~d~I  343 (354)
T KOG0082|consen  340 TDTI  343 (354)
T ss_pred             HHHH
Confidence            7654

>TIGR00959 ffh signal recognition particle protein

Probab=98.35  E-value=8.4e-06  Score=65.20  Aligned_cols=73  Identities=23%  Similarity=0.205  Sum_probs=38.0

Q ss_pred             CCceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCC
Q 029158           66 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV  145 (198)
Q Consensus        66 ~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~  145 (198)
                      ++++.++||||....  ...   ...+ +..+.. ...+|.+++|+|+..+  .............-...=+|+||.|..
T Consensus       182 ~~DvVIIDTaGr~~~--d~~---l~~e-L~~i~~-~~~p~e~lLVvda~tg--q~~~~~a~~f~~~v~i~giIlTKlD~~  252 (428)
T TIGR00959       182 GFDVVIVDTAGRLQI--DEE---LMEE-LAAIKE-ILNPDEILLVVDAMTG--QDAVNTAKTFNERLGLTGVVLTKLDGD  252 (428)
T ss_pred             CCCEEEEeCCCcccc--CHH---HHHH-HHHHHH-hhCCceEEEEEeccch--HHHHHHHHHHHhhCCCCEEEEeCccCc
Confidence            357999999995331  011   1111 112211 2247889999998742  222223333332112235779999965


Q ss_pred             Cc
Q 029158          146 FP  147 (198)
Q Consensus       146 ~~  147 (198)
                      ..
T Consensus       253 ~~  254 (428)
T TIGR00959       253 AR  254 (428)
T ss_pred             cc
Confidence            43

This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.

>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]

Probab=98.32  E-value=1.4e-06  Score=62.99  Aligned_cols=44  Identities=20%  Similarity=0.256  Sum_probs=31.9

Q ss_pred             cccceEEEEEeCCCCCCcCcHHHHHHHHhhC-CcEEEEEeccCCC
Q 029158          102 VSLKRVCLLIDTKWGVKPRDHELISLMERSQ-TKYQVVLTKTDTV  145 (198)
Q Consensus       102 ~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~-~p~iiv~nK~Dl~  145 (198)
                      ..+|.++.|+|++...-....++-+..++.+ .++.+|+||+|..
T Consensus       154 ~~vD~vivVvDpS~~sl~taeri~~L~~elg~k~i~~V~NKv~e~  198 (255)
T COG3640         154 EGVDLVIVVVDPSYKSLRTAERIKELAEELGIKRIFVVLNKVDEE  198 (255)
T ss_pred             cCCCEEEEEeCCcHHHHHHHHHHHHHHHHhCCceEEEEEeeccch
Confidence            4589999999997532233344455556667 8999999999975

>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.30  E-value=5.5e-06  Score=65.93  Aligned_cols=24  Identities=25%  Similarity=0.295  Sum_probs=20.8

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhc
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTR   43 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~   43 (198)
                      ....++++|++|+||||++..|.+
T Consensus       190 ~g~vi~lvGpnG~GKTTtlakLA~  213 (420)
T PRK14721        190 QGGVYALIGPTGVGKTTTTAKLAA  213 (420)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            346899999999999999997765

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=98.30  E-value=6.8e-06  Score=66.55  Aligned_cols=149  Identities=19%  Similarity=0.204  Sum_probs=81.2

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCce-----eE-EEEEEeCCceEEEeCCCCccccchhHHHHHHHHHH
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT-----QT-INFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELV   94 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t-----~~-~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~   94 (198)
                      ..+..++|+.++|||.+++++++. .+..  +..+++     .. .........+.+-|.+-...            ...
T Consensus       425 Vf~C~V~G~k~~GKs~lL~sflgr-~~~~--~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~~~------------~~l  489 (625)
T KOG1707|consen  425 VFQCFVVGPKNCGKSALLQSFLGR-SMSD--NNTGTTKPRYAVNSVEVKGQQKYLILREIGEDDQ------------DFL  489 (625)
T ss_pred             eeeEEEEcCCcCchHHHHHHHhcc-cccc--ccccCCCCceeeeeeeeccccceEEEeecCcccc------------ccc
Confidence            567899999999999999999997 3333  221111     11 11222233455555543210            000


Q ss_pred             HHHHhcccccceEEEEEeCCCCCCcCcHHHHHHH----HhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCC
Q 029158           95 KEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLM----ERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQP  170 (198)
Q Consensus        95 ~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~----~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (198)
                         -.....||++++++|++..  ..........    ...+.|+++|++|+|+....+.-  ..+-.+... ..+ -.+
T Consensus       490 ---~~ke~~cDv~~~~YDsS~p--~sf~~~a~v~~~~~~~~~~Pc~~va~K~dlDe~~Q~~--~iqpde~~~-~~~-i~~  560 (625)
T KOG1707|consen  490 ---TSKEAACDVACLVYDSSNP--RSFEYLAEVYNKYFDLYKIPCLMVATKADLDEVPQRY--SIQPDEFCR-QLG-LPP  560 (625)
T ss_pred             ---cCccceeeeEEEecccCCc--hHHHHHHHHHHHhhhccCCceEEEeeccccchhhhcc--CCChHHHHH-hcC-CCC
Confidence               0111349999999999842  2221111111    12479999999999997543211  111111221 122 234


Q ss_pred             cEEeccCCCCChHHHHHHHHHhhc
Q 029158          171 VMMVSSKSGAGIRSLRTVLSKIAR  194 (198)
Q Consensus       171 v~~~Sa~~~~gi~~l~~~i~~~~~  194 (198)
                      -+.+|+++... .+++..|...+.
T Consensus       561 P~~~S~~~~~s-~~lf~kL~~~A~  583 (625)
T KOG1707|consen  561 PIHISSKTLSS-NELFIKLATMAQ  583 (625)
T ss_pred             CeeeccCCCCC-chHHHHHHHhhh
Confidence            55677775333 888888877654

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional

Probab=98.27  E-value=5.9e-06  Score=65.47  Aligned_cols=120  Identities=19%  Similarity=0.274  Sum_probs=61.4

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCc------cceeecCCCC-c-----------eeEEEEE-------------EeCCce
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQW------GVVRTSDKPG-L-----------TQTINFF-------------KLGTKL   69 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~~------~~~~~~~~~~-~-----------t~~~~~~-------------~~~~~~   69 (198)
                      ...++++|++|+||||++..|....      .+........ +           .....+.             ..+.++
T Consensus       223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~  302 (432)
T PRK12724        223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSEL  302 (432)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCE
Confidence            3458999999999999999887431      1111111110 0           0000011             125688


Q ss_pred             EEEeCCCCccccchhHHHHHHHHHHHHHHhccc--ccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCc
Q 029158           70 CLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRV--SLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFP  147 (198)
Q Consensus        70 ~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~--~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~  147 (198)
                      .+|||||.....  ....   .. +..++....  ...-+++|+|+..+.. ...+.++..... -.-=+++||.|....
T Consensus       303 VLIDTaGr~~rd--~~~l---~e-L~~~~~~~~~~~~~e~~LVLsAt~~~~-~~~~~~~~f~~~-~~~glIlTKLDEt~~  374 (432)
T PRK12724        303 ILIDTAGYSHRN--LEQL---ER-MQSFYSCFGEKDSVENLLVLSSTSSYH-HTLTVLKAYESL-NYRRILLTKLDEADF  374 (432)
T ss_pred             EEEeCCCCCccC--HHHH---HH-HHHHHHhhcCCCCCeEEEEEeCCCCHH-HHHHHHHHhcCC-CCCEEEEEcccCCCC
Confidence            999999974321  1111   12 222332211  1346888999975311 112222222211 234688999998754


Q ss_pred             H
Q 029158          148 I  148 (198)
Q Consensus       148 ~  148 (198)
                      .
T Consensus       375 ~  375 (432)
T PRK12724        375 L  375 (432)
T ss_pred             c
Confidence            3

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=98.27  E-value=1.4e-05  Score=64.18  Aligned_cols=142  Identities=18%  Similarity=0.174  Sum_probs=71.5

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC-------ccceeecCCCCc--------------eeEEEE------------EEeCC
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQ-------WGVVRTSDKPGL--------------TQTINF------------FKLGT   67 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~-------~~~~~~~~~~~~--------------t~~~~~------------~~~~~   67 (198)
                      ...++++|++|+||||++..|...       ..+..+...+.-              ..+...            ...+.
T Consensus       221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~~~~  300 (424)
T PRK05703        221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQLRDC  300 (424)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHhCCC
Confidence            347999999999999988776532       122222221100              000000            00146


Q ss_pred             ceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHhhCCcEEEEEeccCCCC
Q 029158           68 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERSQTKYQVVLTKTDTVF  146 (198)
Q Consensus        68 ~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~~~~p~iiv~nK~Dl~~  146 (198)
                      .+.+|||||.....  ...    -..+..++.......-+++|+++..  ...+ .+++......+ +--+++||+|...
T Consensus       301 DlVlIDt~G~~~~d--~~~----~~~L~~ll~~~~~~~~~~LVl~a~~--~~~~l~~~~~~f~~~~-~~~vI~TKlDet~  371 (424)
T PRK05703        301 DVILIDTAGRSQRD--KRL----IEELKALIEFSGEPIDVYLVLSATT--KYEDLKDIYKHFSRLP-LDGLIFTKLDETS  371 (424)
T ss_pred             CEEEEeCCCCCCCC--HHH----HHHHHHHHhccCCCCeEEEEEECCC--CHHHHHHHHHHhCCCC-CCEEEEecccccc
Confidence            89999999974321  111    1122233332222356778888864  2222 22333333222 2358999999865


Q ss_pred             cHHHHHHHHHHHHHHHhccCCCCCcEEeccCCCCCh
Q 029158          147 PIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGI  182 (198)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~~~gi  182 (198)
                      ...  ...+.+.+.       +.|+.+++  +|.++
T Consensus       372 ~~G--~i~~~~~~~-------~lPv~yit--~Gq~V  396 (424)
T PRK05703        372 SLG--SILSLLIES-------GLPISYLT--NGQRV  396 (424)
T ss_pred             ccc--HHHHHHHHH-------CCCEEEEe--CCCCC
Confidence            432  222222222       46777775  34443

>PRK12726 flagellar biosynthesis regulator FlhF; Provisional

Probab=98.27  E-value=7.1e-06  Score=64.17  Aligned_cols=117  Identities=16%  Similarity=0.253  Sum_probs=62.2

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcC-----ccceeecCCCCce------------eEEEEEE-----------------e
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQ-----WGVVRTSDKPGLT------------QTINFFK-----------------L   65 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~-----~~~~~~~~~~~~t------------~~~~~~~-----------------~   65 (198)
                      ....++++|++|+||||++..|...     ..+..+...+.-.            .+..+..                 .
T Consensus       205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~~~  284 (407)
T PRK12726        205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTYVN  284 (407)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHhcC
Confidence            4567899999999999999988742     1122221111100            0000100                 1


Q ss_pred             CCceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhC-C-cEEEEEeccC
Q 029158           66 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQ-T-KYQVVLTKTD  143 (198)
Q Consensus        66 ~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~-~-p~iiv~nK~D  143 (198)
                      +..+.+|||||.....     .+...+ +..+... ...+.+++|+++..    ...+....+..+. . .--+++||.|
T Consensus       285 ~~D~VLIDTAGr~~~d-----~~~l~E-L~~l~~~-~~p~~~~LVLsag~----~~~d~~~i~~~f~~l~i~glI~TKLD  353 (407)
T PRK12726        285 CVDHILIDTVGRNYLA-----EESVSE-ISAYTDV-VHPDLTCFTFSSGM----KSADVMTILPKLAEIPIDGFIITKMD  353 (407)
T ss_pred             CCCEEEEECCCCCccC-----HHHHHH-HHHHhhc-cCCceEEEECCCcc----cHHHHHHHHHhcCcCCCCEEEEEccc
Confidence            3589999999964311     111122 2223322 23466777877642    2333444443332 2 3468899999


Q ss_pred             CCCc
Q 029158          144 TVFP  147 (198)
Q Consensus       144 l~~~  147 (198)
                      ....
T Consensus       354 ET~~  357 (407)
T PRK12726        354 ETTR  357 (407)
T ss_pred             CCCC
Confidence            8754

>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.24  E-value=1.8e-05  Score=57.61  Aligned_cols=155  Identities=15%  Similarity=0.075  Sum_probs=79.4

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE---EEEeCCceEEEeCCCCccccchhHHHHHHHHHHHHH
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY   97 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~---~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~   97 (198)
                      .|+|+++|.-.+||||+-...+..- -+...-....|..+.   +...-.++.+||.||..+.....-.       ....
T Consensus        27 kp~ilLMG~rRsGKsSI~KVVFhkM-sPneTlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D-------~e~i   98 (347)
T KOG3887|consen   27 KPRILLMGLRRSGKSSIQKVVFHKM-SPNETLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFD-------YEMI   98 (347)
T ss_pred             CceEEEEeecccCcchhhheeeecc-CCCceeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccC-------HHHH
Confidence            5889999999999999988776641 000000011111111   1112367999999996543211100       0112


Q ss_pred             HhcccccceEEEEEeCCCCCCcCcHHHHHHHHh-----hCCcEEEEEeccCCCCcHHH----HHHHHHHHHHHHhccCCC
Q 029158           98 VSTRVSLKRVCLLIDTKWGVKPRDHELISLMER-----SQTKYQVVLTKTDTVFPIDV----ARRAMQIEESLKANNSLV  168 (198)
Q Consensus        98 ~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~-----~~~p~iiv~nK~Dl~~~~~~----~~~~~~~~~~~~~~~~~~  168 (198)
                      ++   .+.+++||+|+.....+.-..+...+.+     .++.+=+.+.|+|-.+.+..    ..+.++..+.+.......
T Consensus        99 F~---~~gALifvIDaQddy~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~d~gle~  175 (347)
T KOG3887|consen   99 FR---GVGALIFVIDAQDDYMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIETQRDIHQRTNDELADAGLEK  175 (347)
T ss_pred             Hh---ccCeEEEEEechHHHHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhhhhhHHHHHHHhhHHHHhhhhcc
Confidence            22   2778999999965322211112222222     14567789999998876422    233344444444433323


Q ss_pred             --CCcEEeccCCCCChHHHHH
Q 029158          169 --QPVMMVSSKSGAGIRSLRT  187 (198)
Q Consensus       169 --~~v~~~Sa~~~~gi~~l~~  187 (198)
                        +.+..+|-.+ ..+-|.+.
T Consensus       176 v~vsf~LTSIyD-HSIfEAFS  195 (347)
T KOG3887|consen  176 VQVSFYLTSIYD-HSIFEAFS  195 (347)
T ss_pred             ceEEEEEeeecc-hHHHHHHH
Confidence              3345555554 33333333

>KOG2484 consensus GTPase [General function prediction only]

Probab=98.22  E-value=1.3e-05  Score=62.26  Aligned_cols=71  Identities=18%  Similarity=0.102  Sum_probs=55.9

Q ss_pred             HHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHH-hh-CCcEEEEEeccCCCCcHHHHHHHHHHHHHH
Q 029158           91 EELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLME-RS-QTKYQVVLTKTDTVFPIDVARRAMQIEESL  161 (198)
Q Consensus        91 ~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~-~~-~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~  161 (198)
                      ..+..++......+|+|+.|+||.+++.....++=+.+. .. ++..|+|+||.|+++.+.+++++.++...+
T Consensus       134 kaY~ke~rkvve~sDVVleVlDARDPlgtR~~~vE~~V~~~~gnKkLILVLNK~DLVPrEv~e~Wl~YLr~~~  206 (435)
T KOG2484|consen  134 KAYDKEFRKVVEASDVVLEVLDARDPLGTRCPEVEEAVLQAHGNKKLILVLNKIDLVPREVVEKWLVYLRREG  206 (435)
T ss_pred             HHHHHHHHHHHhhhheEEEeeeccCCCCCCChhHHHHHHhccCCceEEEEeehhccCCHHHHHHHHHHHHhhC
Confidence            333444555555699999999999988888777766664 33 489999999999999999999999988763

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=98.21  E-value=2.4e-05  Score=63.36  Aligned_cols=23  Identities=26%  Similarity=0.406  Sum_probs=20.4

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      ..++++|++|+||||++..|...
T Consensus       257 ~Vi~LvGpnGvGKTTTiaKLA~~  279 (484)
T PRK06995        257 GVFALMGPTGVGKTTTTAKLAAR  279 (484)
T ss_pred             cEEEEECCCCccHHHHHHHHHHH
Confidence            57999999999999999988853

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional

Probab=98.20  E-value=2.1e-05  Score=62.14  Aligned_cols=118  Identities=15%  Similarity=0.145  Sum_probs=63.6

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCc---------cceeecCCCC---c-----------eeEEEEE------------Ee
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQW---------GVVRTSDKPG---L-----------TQTINFF------------KL   65 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~~---------~~~~~~~~~~---~-----------t~~~~~~------------~~   65 (198)
                      ...|+++|++|+||||.+..|....         .+..+.....   .           ..+....            ..
T Consensus       174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~~  253 (388)
T PRK12723        174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQSK  253 (388)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHhC
Confidence            4579999999999999998876421         1111111110   0           0001000            02


Q ss_pred             CCceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhC--CcEEEEEeccC
Q 029158           66 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQ--TKYQVVLTKTD  143 (198)
Q Consensus        66 ~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~--~p~iiv~nK~D  143 (198)
                      +..+.++||+|....   +  ...+.+ +..++.......-+++|+|++.+    ...+.+.+..+.  -+-=+++||.|
T Consensus       254 ~~DlVLIDTaGr~~~---~--~~~l~e-l~~~l~~~~~~~e~~LVlsat~~----~~~~~~~~~~~~~~~~~~~I~TKlD  323 (388)
T PRK12723        254 DFDLVLVDTIGKSPK---D--FMKLAE-MKELLNACGRDAEFHLAVSSTTK----TSDVKEIFHQFSPFSYKTVIFTKLD  323 (388)
T ss_pred             CCCEEEEcCCCCCcc---C--HHHHHH-HHHHHHhcCCCCeEEEEEcCCCC----HHHHHHHHHHhcCCCCCEEEEEecc
Confidence            468999999996431   1  111122 22333333222358899999764    222223344432  24568999999


Q ss_pred             CCCcH
Q 029158          144 TVFPI  148 (198)
Q Consensus       144 l~~~~  148 (198)
                      .....
T Consensus       324 et~~~  328 (388)
T PRK12723        324 ETTCV  328 (388)
T ss_pred             CCCcc
Confidence            87643

>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily

Probab=98.14  E-value=4.3e-06  Score=55.21  Aligned_cols=22  Identities=23%  Similarity=0.250  Sum_probs=20.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 029158           23 EIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        23 ~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      +|+++|..|+|||+|+.++...
T Consensus         2 kvv~~G~~gvGKt~l~~~~~~~   23 (124)
T smart00010        2 KVVGIGDSGVGKVGKSARFVQF   23 (124)
T ss_pred             EEEEECCCChhHHHHHHHHhcC
Confidence            7899999999999999999665

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.

>KOG0446 consensus Vacuolar sorting protein VPS1, dynamin, and related proteins [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]

Probab=98.14  E-value=1.2e-06  Score=73.32  Aligned_cols=79  Identities=16%  Similarity=0.280  Sum_probs=50.9

Q ss_pred             CceEEEeCCCCcccc---chhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHhhCCcEEEEEecc
Q 029158           67 TKLCLVDLPGYGFAY---AKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERSQTKYQVVLTKT  142 (198)
Q Consensus        67 ~~~~iiDtpG~~~~~---~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~~~~p~iiv~nK~  142 (198)
                      .+++++|+||+....   +...+...+..+...|+......  ++.|..++..+...+ ..+...+...+.+.+-|++|.
T Consensus       132 ~~lTLvDlPG~tkvpv~dqp~di~~qI~~mi~~yi~~~~~i--ILav~~an~d~ats~alkiarevDp~g~RTigvitK~  209 (657)
T KOG0446|consen  132 ANLTLVDLPGLTKVPVADQPDDIEEEIKSMIEEYIEKPNRI--ILAVTPANSDIATSPALVVAREVDPGGSRTLEVITKF  209 (657)
T ss_pred             chhhhcCCCCCcccccCCCCccHHHHHHHHHHHhccccchh--hhhccchhhhhhcCHHHHHHHhhCCCccchhHHhhhH
Confidence            478999999986632   44557778888888887774332  344445554333322 444555555567788888888


Q ss_pred             CCCCc
Q 029158          143 DTVFP  147 (198)
Q Consensus       143 Dl~~~  147 (198)
                      |+.+.
T Consensus       210 Dlmdk  214 (657)
T KOG0446|consen  210 DFMDK  214 (657)
T ss_pred             Hhhhc
Confidence            87654

>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.12  E-value=1.5e-05  Score=67.63  Aligned_cols=23  Identities=26%  Similarity=0.443  Sum_probs=20.3

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      ..++++|++|+||||++..|...
T Consensus       186 ~Vi~lVGpnGvGKTTTiaKLA~~  208 (767)
T PRK14723        186 GVLALVGPTGVGKTTTTAKLAAR  208 (767)
T ss_pred             eEEEEECCCCCcHHHHHHHHHhh
Confidence            46899999999999999988854

>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]

Probab=98.09  E-value=1.9e-05  Score=63.17  Aligned_cols=80  Identities=15%  Similarity=0.166  Sum_probs=61.3

Q ss_pred             HHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhh--CCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCC
Q 029158           92 ELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERS--QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQ  169 (198)
Q Consensus        92 ~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~--~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  169 (198)
                      +++++...-...+|+|+.++||..++-.....+..++.+.  .+..++++||+||.++.......+++.+.       .+
T Consensus       163 E~WRQLWRVlErSDivvqIVDARnPllfr~~dLe~Yvke~d~~K~~~LLvNKaDLl~~~qr~aWa~YF~~~-------ni  235 (562)
T KOG1424|consen  163 EIWRQLWRVLERSDIVVQIVDARNPLLFRSPDLEDYVKEVDPSKANVLLVNKADLLPPEQRVAWAEYFRQN-------NI  235 (562)
T ss_pred             HHHHHHHHHHhhcceEEEEeecCCccccCChhHHHHHhccccccceEEEEehhhcCCHHHHHHHHHHHHhc-------Cc
Confidence            3444555556668999999999997766666666666654  36789999999999998887777776654       48


Q ss_pred             CcEEeccCC
Q 029158          170 PVMMVSSKS  178 (198)
Q Consensus       170 ~v~~~Sa~~  178 (198)
                      ++++.||..
T Consensus       236 ~~vf~SA~~  244 (562)
T KOG1424|consen  236 PVVFFSALA  244 (562)
T ss_pred             eEEEEeccc
Confidence            999999976

>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]

Probab=98.08  E-value=1.3e-05  Score=64.10  Aligned_cols=131  Identities=17%  Similarity=0.274  Sum_probs=84.7

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCccceee--------------cCCCCceeEEE----EEE---------------e
Q 029158           19 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRT--------------SDKPGLTQTIN----FFK---------------L   65 (198)
Q Consensus        19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~--------------~~~~~~t~~~~----~~~---------------~   65 (198)
                      .+..++.++-....|||||-.+|.....+...              ....+.|...+    ++.               .
T Consensus        17 ~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~~   96 (842)
T KOG0469|consen   17 KNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDGN   96 (842)
T ss_pred             cccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCCc
Confidence            45677888999999999999998854211110              00111221110    110               0


Q ss_pred             CCceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCC
Q 029158           66 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV  145 (198)
Q Consensus        66 ~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~  145 (198)
                      +.-+.+||.||+-+             +-.+.-..++..|+.++|+|.-+|.--+..-++.+....++.-++++||+|..
T Consensus        97 ~FLiNLIDSPGHVD-------------FSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~ERIkPvlv~NK~DRA  163 (842)
T KOG0469|consen   97 GFLINLIDSPGHVD-------------FSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLVMNKMDRA  163 (842)
T ss_pred             ceeEEeccCCCccc-------------chhhhhheeEeccCcEEEEEccCceEechHHHHHHHHHhhccceEEeehhhHH
Confidence            23478999999733             33455566677899999999999877777777877776677778999999975


Q ss_pred             Cc---HHHHHHHHHHHHHHH
Q 029158          146 FP---IDVARRAMQIEESLK  162 (198)
Q Consensus       146 ~~---~~~~~~~~~~~~~~~  162 (198)
                      --   ...++..+.+++..+
T Consensus       164 lLELq~~~EeLyqtf~R~VE  183 (842)
T KOG0469|consen  164 LLELQLSQEELYQTFQRIVE  183 (842)
T ss_pred             HHhhcCCHHHHHHHHHHHHh
Confidence            32   133455555555554

>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.07  E-value=3e-05  Score=60.18  Aligned_cols=23  Identities=26%  Similarity=0.385  Sum_probs=19.2

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHh
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALT   42 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~   42 (198)
                      ..-.|.++|-.|+||||.+..|.
T Consensus       100 kpsVimfVGLqG~GKTTtc~KlA  122 (483)
T KOG0780|consen  100 KPSVIMFVGLQGSGKTTTCTKLA  122 (483)
T ss_pred             CCcEEEEEeccCCCcceeHHHHH
Confidence            34468899999999999988776

>PRK01889 GTPase RsgA; Reviewed

Probab=98.04  E-value=4.3e-06  Score=65.61  Aligned_cols=57  Identities=30%  Similarity=0.327  Sum_probs=37.9

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCccceeecC-------CCCceeEEEEEEeCCceEEEeCCCCcc
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSD-------KPGLTQTINFFKLGTKLCLVDLPGYGF   79 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~-------~~~~t~~~~~~~~~~~~~iiDtpG~~~   79 (198)
                      .+++++|.+|+|||||+|.|++... ...+.       ...+|....+........++||||+..
T Consensus       196 ~~~~lvG~sgvGKStLin~L~g~~~-~~~G~i~~~~~~g~~tt~~~~l~~l~~~~~l~DtpG~~~  259 (356)
T PRK01889        196 KTVALLGSSGVGKSTLVNALLGEEV-QKTGAVREDDSKGRHTTTHRELHPLPSGGLLIDTPGMRE  259 (356)
T ss_pred             CEEEEECCCCccHHHHHHHHHHhcc-cceeeEEECCCCCcchhhhccEEEecCCCeecCCCchhh
Confidence            4799999999999999999997531 11111       112343344444444567899999843

>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=98.01  E-value=0.00023  Score=53.72  Aligned_cols=118  Identities=20%  Similarity=0.331  Sum_probs=63.2

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCc-----cceeecCCCC------------ceeEEEEEE-----------------e
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQW-----GVVRTSDKPG------------LTQTINFFK-----------------L   65 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~~-----~~~~~~~~~~------------~t~~~~~~~-----------------~   65 (198)
                      ...+++++|++|+||||++..+....     .+........            ...+..+..                 .
T Consensus        74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~  153 (270)
T PRK06731         74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA  153 (270)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcC
Confidence            44789999999999999988776431     1111111100            000001100                 1


Q ss_pred             CCceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhC--CcEEEEEeccC
Q 029158           66 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQ--TKYQVVLTKTD  143 (198)
Q Consensus        66 ~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~--~p~iiv~nK~D  143 (198)
                      +..+.++||||-....     ...+.++. +++.. ...+.+++|+|++..    ..+..+.+..+.  ..-=+++||.|
T Consensus       154 ~~D~ViIDt~Gr~~~~-----~~~l~el~-~~~~~-~~~~~~~LVl~a~~~----~~d~~~~~~~f~~~~~~~~I~TKlD  222 (270)
T PRK06731        154 RVDYILIDTAGKNYRA-----SETVEEMI-ETMGQ-VEPDYICLTLSASMK----SKDMIEIITNFKDIHIDGIVFTKFD  222 (270)
T ss_pred             CCCEEEEECCCCCcCC-----HHHHHHHH-HHHhh-hCCCeEEEEEcCccC----HHHHHHHHHHhCCCCCCEEEEEeec
Confidence            4689999999964311     11112222 22222 235678999998642    223333333322  23468999999


Q ss_pred             CCCcH
Q 029158          144 TVFPI  148 (198)
Q Consensus       144 l~~~~  148 (198)
                      .....
T Consensus       223 et~~~  227 (270)
T PRK06731        223 ETASS  227 (270)
T ss_pred             CCCCc
Confidence            87643

>PRK13695 putative NTPase; Provisional

Probab=97.99  E-value=6.7e-05  Score=52.92  Aligned_cols=74  Identities=12%  Similarity=0.012  Sum_probs=41.6

Q ss_pred             ccceEEEEEeC---CCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEeccCCC
Q 029158          103 SLKRVCLLIDT---KWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSG  179 (198)
Q Consensus       103 ~~d~vi~v~d~---~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~~  179 (198)
                      .+++  +++|-   .+.......+.+..+...+.|++++.+|....      .....+..      .+...++.+   +.
T Consensus        96 ~~~~--lllDE~~~~e~~~~~~~~~l~~~~~~~~~~i~v~h~~~~~------~~~~~i~~------~~~~~i~~~---~~  158 (174)
T PRK13695         96 EADV--IIIDEIGKMELKSPKFVKAVEEVLDSEKPVIATLHRRSVH------PFVQEIKS------RPGGRVYEL---TP  158 (174)
T ss_pred             CCCE--EEEECCCcchhhhHHHHHHHHHHHhCCCeEEEEECchhhH------HHHHHHhc------cCCcEEEEE---cc
Confidence            4555  57884   22222333445555556689999999985321      11122221      123456665   56


Q ss_pred             CChHHHHHHHHHhh
Q 029158          180 AGIRSLRTVLSKIA  193 (198)
Q Consensus       180 ~gi~~l~~~i~~~~  193 (198)
                      +|-+++...+.+.+
T Consensus       159 ~~r~~~~~~~~~~~  172 (174)
T PRK13695        159 ENRDSLPFEILNRL  172 (174)
T ss_pred             hhhhhHHHHHHHHH
Confidence            77778888887654

>COG1162 Predicted GTPases [General function prediction only]

Probab=97.97  E-value=0.0001  Score=55.81  Aligned_cols=84  Identities=19%  Similarity=0.238  Sum_probs=57.0

Q ss_pred             cceEEEEEeCCCCCCcCc--HHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEeccCCCCC
Q 029158          104 LKRVCLLIDTKWGVKPRD--HELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAG  181 (198)
Q Consensus       104 ~d~vi~v~d~~~~~~~~~--~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~~~g  181 (198)
                      .|-+++|+.+..+.....  ..++-.+...++..++|+||+|+.+.++...  +.......   ..+.+++.+|+++++|
T Consensus        80 ~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~~gi~pvIvlnK~DL~~~~~~~~--~~~~~~y~---~~gy~v~~~s~~~~~~  154 (301)
T COG1162          80 NDQAIIVVSLVDPDFNTNLLDRYLVLAEAGGIEPVIVLNKIDLLDDEEAAV--KELLREYE---DIGYPVLFVSAKNGDG  154 (301)
T ss_pred             cceEEEEEeccCCCCCHHHHHHHHHHHHHcCCcEEEEEEccccCcchHHHH--HHHHHHHH---hCCeeEEEecCcCccc
Confidence            556667766665322221  2344455566888889999999998876653  22222222   2368999999999999


Q ss_pred             hHHHHHHHHHh
Q 029158          182 IRSLRTVLSKI  192 (198)
Q Consensus       182 i~~l~~~i~~~  192 (198)
                      +++|.+++...
T Consensus       155 ~~~l~~~l~~~  165 (301)
T COG1162         155 LEELAELLAGK  165 (301)
T ss_pred             HHHHHHHhcCC
Confidence            99999988654

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=97.97  E-value=5e-05  Score=50.67  Aligned_cols=21  Identities=29%  Similarity=0.509  Sum_probs=19.6

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 029158           24 IAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        24 v~~vG~~~~GKSsli~~l~~~   44 (198)
                      |++.|++|+|||++++.++..
T Consensus         1 ill~G~~G~GKT~l~~~la~~   21 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQY   21 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHH
T ss_pred             CEEECcCCCCeeHHHHHHHhh
Confidence            689999999999999999986

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=97.96  E-value=0.00023  Score=56.24  Aligned_cols=26  Identities=19%  Similarity=0.271  Sum_probs=21.0

Q ss_pred             CCCCCeEEEEcCCCCCHHHHHHHHhc
Q 029158           18 APDLPEIAFAGRSNVGKSSMLNALTR   43 (198)
Q Consensus        18 ~~~~~~v~~vG~~~~GKSsli~~l~~   43 (198)
                      ...+..|+++|-.|+||||....|..
T Consensus        97 ~~~P~vImmvGLQGsGKTTt~~KLA~  122 (451)
T COG0541          97 KKPPTVILMVGLQGSGKTTTAGKLAK  122 (451)
T ss_pred             CCCCeEEEEEeccCCChHhHHHHHHH
Confidence            34456799999999999999887763

>COG1161 Predicted GTPases [General function prediction only]

Probab=97.92  E-value=9.9e-05  Score=57.21  Aligned_cols=89  Identities=18%  Similarity=0.178  Sum_probs=64.5

Q ss_pred             HHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCC
Q 029158           91 EELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQP  170 (198)
Q Consensus        91 ~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (198)
                      ....++........|+|+.|+|+..+.......+-+.+.  +.+.++|+||+|+.+.....++.+.+.+..      +..
T Consensus        22 ~k~~~~~~~~~~~~d~vvevvDar~P~~s~~~~l~~~v~--~k~~i~vlNK~DL~~~~~~~~W~~~~~~~~------~~~   93 (322)
T COG1161          22 KKAKRQLKEVLKSVDVVVEVVDARDPLGTRNPELERIVK--EKPKLLVLNKADLAPKEVTKKWKKYFKKEE------GIK   93 (322)
T ss_pred             HHHHHHHHHhcccCCEEEEEEeccccccccCccHHHHHc--cCCcEEEEehhhcCCHHHHHHHHHHHHhcC------CCc
Confidence            344445555556699999999999877777666666665  355599999999999877655555555432      456


Q ss_pred             cEEeccCCCCChHHHHH
Q 029158          171 VMMVSSKSGAGIRSLRT  187 (198)
Q Consensus       171 v~~~Sa~~~~gi~~l~~  187 (198)
                      .+.+|++.+.+...+..
T Consensus        94 ~~~v~~~~~~~~~~i~~  110 (322)
T COG1161          94 PIFVSAKSRQGGKKIRK  110 (322)
T ss_pred             cEEEEeecccCccchHH
Confidence            78889998888877774

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=97.85  E-value=7.2e-05  Score=50.65  Aligned_cols=21  Identities=43%  Similarity=0.702  Sum_probs=19.6

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 029158           24 IAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        24 v~~vG~~~~GKSsli~~l~~~   44 (198)
                      |+++|++|+|||||++.|...
T Consensus         2 i~i~GpsGsGKstl~~~L~~~   22 (137)
T cd00071           2 IVLSGPSGVGKSTLLKRLLEE   22 (137)
T ss_pred             EEEECCCCCCHHHHHHHHHhc
Confidence            689999999999999999876

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=97.81  E-value=2.2e-05  Score=53.39  Aligned_cols=21  Identities=29%  Similarity=0.561  Sum_probs=19.3

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 029158           24 IAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        24 v~~vG~~~~GKSsli~~l~~~   44 (198)
                      |+++|+||||||||+..+...
T Consensus         2 ii~~G~pgsGKSt~a~~l~~~   22 (143)
T PF13671_consen    2 IILCGPPGSGKSTLAKRLAKR   22 (143)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999999854

...

>smart00275 G_alpha G protein alpha subunit

Probab=97.80  E-value=0.00012  Score=57.26  Aligned_cols=115  Identities=14%  Similarity=0.105  Sum_probs=71.1

Q ss_pred             CCceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCC---C-----cCc---HHHHHHHHh----
Q 029158           66 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGV---K-----PRD---HELISLMER----  130 (198)
Q Consensus        66 ~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~---~-----~~~---~~~~~~~~~----  130 (198)
                      +..+.+||..|..      ..+..|    ..++..   +++|+||+|.++--   .     ...   ...++.+-.    
T Consensus       183 ~~~~~~~DvgGqr------~~R~kW----~~~f~~---v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~  249 (342)
T smart00275      183 KLFFRMFDVGGQR------SERKKW----IHCFDN---VTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWF  249 (342)
T ss_pred             CeEEEEEecCCch------hhhhhH----HHHhCC---CCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccc
Confidence            5678999999952      122233    334443   89999999998611   0     011   122222222    


Q ss_pred             hCCcEEEEEeccCCCCc-----------------HHHHHHHHHHHHHHHhccC----CCCCcEEeccCCCCChHHHHHHH
Q 029158          131 SQTKYQVVLTKTDTVFP-----------------IDVARRAMQIEESLKANNS----LVQPVMMVSSKSGAGIRSLRTVL  189 (198)
Q Consensus       131 ~~~p~iiv~nK~Dl~~~-----------------~~~~~~~~~~~~~~~~~~~----~~~~v~~~Sa~~~~gi~~l~~~i  189 (198)
                      .+.|+++++||.|+...                 .+.+...+.+.+.+.....    ..+-++.++|.+-.++..+++.+
T Consensus       250 ~~~piil~~NK~D~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v  329 (342)
T smart00275      250 ANTSIILFLNKIDLFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAV  329 (342)
T ss_pred             cCCcEEEEEecHHhHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHH
Confidence            26899999999997432                 2344555666666554432    23446788899999999998877


Q ss_pred             HHhh
Q 029158          190 SKIA  193 (198)
Q Consensus       190 ~~~~  193 (198)
                      .+.+
T Consensus       330 ~~~I  333 (342)
T smart00275      330 KDII  333 (342)
T ss_pred             HHHH
Confidence            6543

Subunit of G proteins that contains the guanine nucleotide binding site

>KOG1533 consensus Predicted GTPase [General function prediction only]

Probab=97.75  E-value=0.0003  Score=51.25  Aligned_cols=75  Identities=17%  Similarity=0.180  Sum_probs=38.7

Q ss_pred             CceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHH-------HHHHhhCCcEEEEE
Q 029158           67 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELI-------SLMERSQTKYQVVL  139 (198)
Q Consensus        67 ~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~-------~~~~~~~~p~iiv~  139 (198)
                      ..+.++|+||.-+-+..+...   ....+.+.+ ...--.++-++|+--  -.....++       ..+.....|.+=|+
T Consensus        97 ~~Y~lFDcPGQVELft~h~~l---~~I~~~Lek-~~~rl~~V~LiDs~y--cs~p~~~iS~lL~sl~tMl~melphVNvl  170 (290)
T KOG1533|consen   97 DHYVLFDCPGQVELFTHHDSL---NKIFRKLEK-LDYRLVAVNLIDSHY--CSDPSKFISSLLVSLATMLHMELPHVNVL  170 (290)
T ss_pred             CcEEEEeCCCcEEEEeccchH---HHHHHHHHH-cCceEEEEEeeecee--eCChHHHHHHHHHHHHHHHhhcccchhhh
Confidence            478999999975543332211   222222222 111223444566532  11222222       22223478999999


Q ss_pred             eccCCCCc
Q 029158          140 TKTDTVFP  147 (198)
Q Consensus       140 nK~Dl~~~  147 (198)
                      .|+|+...
T Consensus       171 SK~Dl~~~  178 (290)
T KOG1533|consen  171 SKADLLKK  178 (290)
T ss_pred             hHhHHHHh
Confidence            99998654

>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster

Probab=97.75  E-value=0.00013  Score=47.11  Aligned_cols=100  Identities=19%  Similarity=0.297  Sum_probs=52.6

Q ss_pred             EEEE-cCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHHHHhccc
Q 029158           24 IAFA-GRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRV  102 (198)
Q Consensus        24 v~~v-G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (198)
                      |+++ +..|+||||+...|....  +........-.+... ....++.++|||+....            .....+.   
T Consensus         2 i~~~~~kgg~gkt~~~~~la~~~--~~~~~~~~~l~d~d~-~~~~D~IIiDtpp~~~~------------~~~~~l~---   63 (106)
T cd03111           2 IAFIGAKGGVGATTLAANLAVAL--AKEAGRRVLLVDLDL-QFGDDYVVVDLGRSLDE------------VSLAALD---   63 (106)
T ss_pred             EEEECCCCCCcHHHHHHHHHHHH--HhcCCCcEEEEECCC-CCCCCEEEEeCCCCcCH------------HHHHHHH---
Confidence            3444 458899999887776541  111011100111110 01237999999985321            1112222   


Q ss_pred             ccceEEEEEeCCCCCCcCcHHHHHHHHhhC----CcEEEEEec
Q 029158          103 SLKRVCLLIDTKWGVKPRDHELISLMERSQ----TKYQVVLTK  141 (198)
Q Consensus       103 ~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~----~p~iiv~nK  141 (198)
                      .+|.++++++.+.........+++.+++.+    .++.+|+|+
T Consensus        64 ~aD~vlvvv~~~~~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr  106 (106)
T cd03111          64 QADRVFLVTQQDLPSIRNAKRLLELLRVLDYSLPAKIELVLNR  106 (106)
T ss_pred             HcCeEEEEecCChHHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence            289999999887532333344555555433    356688875

The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.

>KOG2423 consensus Nucleolar GTPase [General function prediction only]

Probab=97.75  E-value=0.00038  Score=54.40  Aligned_cols=98  Identities=16%  Similarity=0.162  Sum_probs=67.6

Q ss_pred             HHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhh--CCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCC
Q 029158           92 ELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERS--QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQ  169 (198)
Q Consensus        92 ~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~--~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  169 (198)
                      .++.+++.-...+|+++-|+||.++....-..+-.++.+.  -+.+|+|+|||||+..---..+...+.....      .
T Consensus       202 RIW~ELyKViDSSDVvvqVlDARDPmGTrc~~ve~ylkke~phKHli~vLNKvDLVPtwvt~~Wv~~lSkeyP------T  275 (572)
T KOG2423|consen  202 RIWGELYKVIDSSDVVVQVLDARDPMGTRCKHVEEYLKKEKPHKHLIYVLNKVDLVPTWVTAKWVRHLSKEYP------T  275 (572)
T ss_pred             HHHHHHHHhhcccceeEEeeeccCCcccccHHHHHHHhhcCCcceeEEEeeccccccHHHHHHHHHHHhhhCc------c
Confidence            3444666667779999999999998877777777777654  3678999999999975433333333333211      1


Q ss_pred             CcEEeccCCCCChHHHHHHHHHhhcc
Q 029158          170 PVMMVSSKSGAGIRSLRTVLSKIARF  195 (198)
Q Consensus       170 ~v~~~Sa~~~~gi~~l~~~i~~~~~~  195 (198)
                      -.|..|-....|--.|++.+..+.+.
T Consensus       276 iAfHAsi~nsfGKgalI~llRQf~kL  301 (572)
T KOG2423|consen  276 IAFHASINNSFGKGALIQLLRQFAKL  301 (572)
T ss_pred             eeeehhhcCccchhHHHHHHHHHHhh
Confidence            23566667778888888887776543

>TIGR03263 guanyl_kin guanylate kinase

Probab=97.72  E-value=0.00015  Score=51.29  Aligned_cols=22  Identities=41%  Similarity=0.625  Sum_probs=20.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 029158           23 EIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        23 ~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      .|+++|++|||||||++.|.+.
T Consensus         3 ii~l~G~~GsGKsTl~~~L~~~   24 (180)
T TIGR03263         3 LIVISGPSGVGKSTLVKALLEE   24 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHcc
Confidence            5899999999999999999986

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal

Probab=97.71  E-value=0.00069  Score=50.66  Aligned_cols=21  Identities=33%  Similarity=0.588  Sum_probs=19.0

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 029158           24 IAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        24 v~~vG~~~~GKSsli~~l~~~   44 (198)
                      |+++|.|||||||+...|...
T Consensus         2 Ivl~G~pGSGKST~a~~La~~   22 (249)
T TIGR03574         2 IILTGLPGVGKSTFSKELAKK   22 (249)
T ss_pred             EEEEcCCCCCHHHHHHHHHHH
Confidence            789999999999999998754

Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=97.69  E-value=3.4e-05  Score=50.87  Aligned_cols=22  Identities=27%  Similarity=0.475  Sum_probs=20.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 029158           23 EIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        23 ~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      .|++.|++||||||+.+.|...
T Consensus         1 vI~I~G~~gsGKST~a~~La~~   22 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAER   22 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHH
Confidence            4899999999999999999885

...

>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]

Probab=97.69  E-value=2.9e-05  Score=54.07  Aligned_cols=24  Identities=29%  Similarity=0.344  Sum_probs=21.6

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      ..+|+++|.+||||||+-..|...
T Consensus         2 ~~~IvLiG~mGaGKSTIGr~LAk~   25 (172)
T COG0703           2 NMNIVLIGFMGAGKSTIGRALAKA   25 (172)
T ss_pred             CccEEEEcCCCCCHhHHHHHHHHH
Confidence            357999999999999999999876

>PRK08118 topology modulation protein; Reviewed

Probab=97.68  E-value=3.9e-05  Score=53.76  Aligned_cols=23  Identities=26%  Similarity=0.453  Sum_probs=21.1

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      .+|+++|++|||||||...|...
T Consensus         2 ~rI~I~G~~GsGKSTlak~L~~~   24 (167)
T PRK08118          2 KKIILIGSGGSGKSTLARQLGEK   24 (167)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            57999999999999999999875

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.67  E-value=3.5e-05  Score=56.54  Aligned_cols=24  Identities=29%  Similarity=0.350  Sum_probs=21.3

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCc
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQW   45 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~~   45 (198)
                      --|+++|++|||||||++.+.+-.
T Consensus        30 EfvsilGpSGcGKSTLLriiAGL~   53 (248)
T COG1116          30 EFVAILGPSGCGKSTLLRLIAGLE   53 (248)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            358999999999999999999753

>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=97.67  E-value=0.00019  Score=54.87  Aligned_cols=153  Identities=22%  Similarity=0.316  Sum_probs=76.9

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCc-----cc-------------------------eeecCCCCceeE-EEE-----
Q 029158           19 PDLPEIAFAGRSNVGKSSMLNALTRQW-----GV-------------------------VRTSDKPGLTQT-INF-----   62 (198)
Q Consensus        19 ~~~~~v~~vG~~~~GKSsli~~l~~~~-----~~-------------------------~~~~~~~~~t~~-~~~-----   62 (198)
                      .....++++|--|+||||-|..|....     ++                         ..+....+.... +.+     
T Consensus       137 ~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~~  216 (340)
T COG0552         137 KKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQA  216 (340)
T ss_pred             CCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHHH
Confidence            346679999999999999999887421     00                         111100000000 000     


Q ss_pred             -EEeCCceEEEeCCCCccccchhHHHHHHHHHHHHHHhccc-ccceEEEEEeCCCCCCcCcHHHHHHHHhhCCc-EEEEE
Q 029158           63 -FKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRV-SLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVL  139 (198)
Q Consensus        63 -~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p-~iiv~  139 (198)
                       ...+..+.++||+|=..+  .....+..+.+.+-.-.... ..+-+++++|+.-|  .......+...+. ++ -=+++
T Consensus       217 Akar~~DvvliDTAGRLhn--k~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttG--qnal~QAk~F~ea-v~l~GiIl  291 (340)
T COG0552         217 AKARGIDVVLIDTAGRLHN--KKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTG--QNALSQAKIFNEA-VGLDGIIL  291 (340)
T ss_pred             HHHcCCCEEEEeCcccccC--chhHHHHHHHHHHHhccccCCCCceEEEEEEcccC--hhHHHHHHHHHHh-cCCceEEE
Confidence             012568999999993222  11122222222222111111 13448888899853  2223333333332 22 25789


Q ss_pred             eccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEeccCCCCChHHHHH
Q 029158          140 TKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRT  187 (198)
Q Consensus       140 nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~~~gi~~l~~  187 (198)
                      ||+|-......   .-.+...+      ..|+.++  --|+++++|..
T Consensus       292 TKlDgtAKGG~---il~I~~~l------~~PI~fi--GvGE~~~DL~~  328 (340)
T COG0552         292 TKLDGTAKGGI---ILSIAYEL------GIPIKFI--GVGEGYDDLRP  328 (340)
T ss_pred             EecccCCCcce---eeeHHHHh------CCCEEEE--eCCCChhhccc
Confidence            99995543321   11122221      4788777  35777777754

>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell

Probab=97.66  E-value=0.0011  Score=46.68  Aligned_cols=65  Identities=11%  Similarity=0.050  Sum_probs=39.8

Q ss_pred             ceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCC-cEEEEEeccCCCC
Q 029158           68 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQT-KYQVVLTKTDTVF  146 (198)
Q Consensus        68 ~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~-p~iiv~nK~Dl~~  146 (198)
                      ++.++|||+....            .....+   ..+|.+++++++..........+++.++..+. ...+|+|++|...
T Consensus        64 d~viiD~p~~~~~------------~~~~~l---~~ad~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~~iv~N~~~~~~  128 (179)
T cd02036          64 DYILIDSPAGIER------------GFITAI---APADEALLVTTPEISSLRDADRVKGLLEALGIKVVGVIVNRVRPDM  128 (179)
T ss_pred             CEEEEECCCCCcH------------HHHHHH---HhCCcEEEEeCCCcchHHHHHHHHHHHHHcCCceEEEEEeCCcccc
Confidence            7999999974221            011112   23899999998875322223345555555443 4678999998764


Q ss_pred             c
Q 029158          147 P  147 (198)
Q Consensus       147 ~  147 (198)
                      .
T Consensus       129 ~  129 (179)
T cd02036         129 V  129 (179)
T ss_pred             c
Confidence            3

The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.

>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1)

Probab=97.65  E-value=0.00046  Score=38.77  Aligned_cols=41  Identities=20%  Similarity=0.171  Sum_probs=24.2

Q ss_pred             ccceEEEEEeCCCCCCc--C-cHHHHHHHHhh--CCcEEEEEeccC
Q 029158          103 SLKRVCLLIDTKWGVKP--R-DHELISLMERS--QTKYQVVLTKTD  143 (198)
Q Consensus       103 ~~d~vi~v~d~~~~~~~--~-~~~~~~~~~~~--~~p~iiv~nK~D  143 (198)
                      ..+.|+|++|.+.....  . ...+++.++..  +.|+++|+||+|
T Consensus        13 L~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~~~P~i~V~nK~D   58 (58)
T PF06858_consen   13 LADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFPNKPVIVVLNKID   58 (58)
T ss_dssp             T-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTTTS-EEEEE--TT
T ss_pred             hcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCEEEEEeccC
Confidence            36789999999873332  2 23445666654  799999999998

The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=97.63  E-value=5.8e-05  Score=43.38  Aligned_cols=21  Identities=29%  Similarity=0.499  Sum_probs=18.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 029158           23 EIAFAGRSNVGKSSMLNALTR   43 (198)
Q Consensus        23 ~v~~vG~~~~GKSsli~~l~~   43 (198)
                      ..++.|+.|+|||||+.++.-
T Consensus        25 ~tli~G~nGsGKSTllDAi~~   45 (62)
T PF13555_consen   25 VTLITGPNGSGKSTLLDAIQT   45 (62)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999998764

>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain

Probab=97.63  E-value=0.00031  Score=43.97  Aligned_cols=69  Identities=17%  Similarity=0.245  Sum_probs=42.1

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccc
Q 029158           24 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVS  103 (198)
Q Consensus        24 v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (198)
                      +++.|..|+||||+...+...-  .. ..+.     ...  .+ ++.++|+++......         ..   .......
T Consensus         2 ~~~~g~~G~Gktt~~~~l~~~l--~~-~g~~-----v~~--~~-d~iivD~~~~~~~~~---------~~---~~~~~~~   58 (99)
T cd01983           2 IVVTGKGGVGKTTLAANLAAAL--AK-RGKR-----VLL--ID-DYVLIDTPPGLGLLV---------LL---CLLALLA   58 (99)
T ss_pred             EEEECCCCCCHHHHHHHHHHHH--HH-CCCe-----EEE--EC-CEEEEeCCCCccchh---------hh---hhhhhhh
Confidence            6788999999999999888652  11 1111     111  11 799999998543210         00   1122223


Q ss_pred             cceEEEEEeCCC
Q 029158          104 LKRVCLLIDTKW  115 (198)
Q Consensus       104 ~d~vi~v~d~~~  115 (198)
                      +|.++++++...
T Consensus        59 ~~~vi~v~~~~~   70 (99)
T cd01983          59 ADLVIIVTTPEA   70 (99)
T ss_pred             CCEEEEecCCch
Confidence            788999988865

Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=97.63  E-value=4.5e-05  Score=55.63  Aligned_cols=25  Identities=36%  Similarity=0.310  Sum_probs=21.6

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCc
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQW   45 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~~   45 (198)
                      ---|+++|++|||||||+|-+.+-+
T Consensus        31 Ge~vaI~GpSGSGKSTLLniig~ld   55 (226)
T COG1136          31 GEFVAIVGPSGSGKSTLLNLLGGLD   55 (226)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhccc
Confidence            3468999999999999999998763

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=97.59  E-value=5.6e-05  Score=53.00  Aligned_cols=24  Identities=33%  Similarity=0.433  Sum_probs=21.5

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhc
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTR   43 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~   43 (198)
                      ..-+++++|++|+|||||+|.+.+
T Consensus        24 ~ge~vAi~GpSGaGKSTLLnLIAG   47 (231)
T COG3840          24 AGEIVAILGPSGAGKSTLLNLIAG   47 (231)
T ss_pred             CCcEEEEECCCCccHHHHHHHHHh
Confidence            455799999999999999999986

>PRK07261 topology modulation protein; Provisional

Probab=97.58  E-value=6.4e-05  Score=52.91  Aligned_cols=22  Identities=36%  Similarity=0.567  Sum_probs=20.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 029158           23 EIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        23 ~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      +|+++|++|+|||||...|...
T Consensus         2 ri~i~G~~GsGKSTla~~l~~~   23 (171)
T PRK07261          2 KIAIIGYSGSGKSTLARKLSQH   23 (171)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            6999999999999999998764

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=97.57  E-value=6.3e-05  Score=54.08  Aligned_cols=25  Identities=28%  Similarity=0.367  Sum_probs=21.6

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      ..-.++++||+|||||||++.+-+-
T Consensus        27 ~Gevv~iiGpSGSGKSTlLRclN~L   51 (240)
T COG1126          27 KGEVVVIIGPSGSGKSTLLRCLNGL   51 (240)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCC
Confidence            3456899999999999999998765

>PRK08727 hypothetical protein; Validated

Probab=97.56  E-value=0.0012  Score=48.89  Aligned_cols=23  Identities=22%  Similarity=0.302  Sum_probs=20.4

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      ..+++.|++|+|||.|+.+++..
T Consensus        42 ~~l~l~G~~G~GKThL~~a~~~~   64 (233)
T PRK08727         42 DWLYLSGPAGTGKTHLALALCAA   64 (233)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            34999999999999999998765

>PRK14737 gmk guanylate kinase; Provisional

Probab=97.56  E-value=0.00011  Score=52.49  Aligned_cols=38  Identities=16%  Similarity=0.066  Sum_probs=26.9

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeE
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT   59 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~   59 (198)
                      ..-|+++|++|+|||||++.|+... .......+.||+.
T Consensus         4 ~~~ivl~GpsG~GK~tl~~~l~~~~-~~~~~~v~~TTR~   41 (186)
T PRK14737          4 PKLFIISSVAGGGKSTIIQALLEEH-PDFLFSISCTTRA   41 (186)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhcC-CccccccCccCCC
Confidence            4458999999999999999998763 1222333455554

>PRK14738 gmk guanylate kinase; Provisional

Probab=97.56  E-value=0.0001  Score=53.55  Aligned_cols=25  Identities=24%  Similarity=0.411  Sum_probs=21.0

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      ....|+++|++|+|||||++.|...
T Consensus        12 ~~~~ivi~GpsG~GK~tl~~~L~~~   36 (206)
T PRK14738         12 KPLLVVISGPSGVGKDAVLARMRER   36 (206)
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHhc
Confidence            4455788999999999999999754

>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A

Probab=97.52  E-value=7.3e-05  Score=50.79  Aligned_cols=23  Identities=26%  Similarity=0.596  Sum_probs=20.5

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      |.|.++|+.|+|||||+..|++.
T Consensus         1 pvv~VvG~~~sGKTTl~~~Li~~   23 (140)
T PF03205_consen    1 PVVQVVGPKNSGKTTLIRKLINE   23 (140)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            57999999999999999999875

>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins

Probab=97.50  E-value=0.0016  Score=47.69  Aligned_cols=98  Identities=16%  Similarity=0.144  Sum_probs=50.0

Q ss_pred             CceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHh------hCCcEEEEEe
Q 029158           67 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMER------SQTKYQVVLT  140 (198)
Q Consensus        67 ~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~------~~~p~iiv~n  140 (198)
                      ..+.|+||.|....            +....+..   +|+|+.=.-.+..-.....+.++.+.+      ..+|.-++.|
T Consensus        84 ~d~VlvDleG~as~------------~~~~aia~---sDlVlIP~~~s~lD~~eA~~t~~~v~~~~~~~~~~ip~~Vl~T  148 (231)
T PF07015_consen   84 FDFVLVDLEGGASE------------LNDYAIAR---SDLVLIPMQPSQLDADEAAKTFKWVRRLEKAERRDIPAAVLFT  148 (231)
T ss_pred             CCEEEEeCCCCCch------------hHHHHHHH---CCEEEECCCCChHHHHHHHHHHHHHHHHHHhhCCCCCeeEEEe
Confidence            57899999997432            11122221   777765433322111111223333322      2579999999


Q ss_pred             ccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEeccCCCCChHHHHH
Q 029158          141 KTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRT  187 (198)
Q Consensus       141 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~~~gi~~l~~  187 (198)
                      +++-.......   ..+.+.+.     ..|+|.+.-...+.+.+++.
T Consensus       149 r~~~~~~~~~~---~~~~e~~~-----~lpvl~t~l~eR~Af~~m~~  187 (231)
T PF07015_consen  149 RVPAARLTRAQ---RIISEQLE-----SLPVLDTELHERDAFRAMFS  187 (231)
T ss_pred             cCCcchhhHHH---HHHHHHHh-----cCCccccccccHHHHHHHHH
Confidence            99744222211   22233332     26777777666655555554

In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=97.50  E-value=9.4e-05  Score=52.35  Aligned_cols=22  Identities=27%  Similarity=0.514  Sum_probs=20.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 029158           23 EIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        23 ~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      +|+++|+|||||||+...|...
T Consensus         2 riiilG~pGaGK~T~A~~La~~   23 (178)
T COG0563           2 RILILGPPGAGKSTLAKKLAKK   23 (178)
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999999876

>PRK04195 replication factor C large subunit; Provisional

Probab=97.50  E-value=0.0025  Score=52.35  Aligned_cols=24  Identities=29%  Similarity=0.461  Sum_probs=21.8

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      ...+++.|++|+||||++..+++.
T Consensus        39 ~~~lLL~GppG~GKTtla~ala~e   62 (482)
T PRK04195         39 KKALLLYGPPGVGKTSLAHALAND   62 (482)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH
Confidence            456899999999999999999886

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=97.50  E-value=9.3e-05  Score=49.90  Aligned_cols=24  Identities=33%  Similarity=0.476  Sum_probs=21.7

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCc
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQW   45 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~~   45 (198)
                      -.++++|+.|+|||||++.|++..
T Consensus        12 ~~~~i~G~nGsGKStLl~~l~g~~   35 (137)
T PF00005_consen   12 EIVAIVGPNGSGKSTLLKALAGLL   35 (137)
T ss_dssp             SEEEEEESTTSSHHHHHHHHTTSS
T ss_pred             CEEEEEccCCCccccceeeecccc
Confidence            468999999999999999999973

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins

Probab=97.49  E-value=0.00082  Score=51.08  Aligned_cols=50  Identities=22%  Similarity=0.357  Sum_probs=34.9

Q ss_pred             CCCCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEeCCceEEEeCCCC
Q 029158           17 PAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGY   77 (198)
Q Consensus        17 ~~~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~iiDtpG~   77 (198)
                      +..+.|.++++|++|-|||++++++....  ....+.     +    ....++..+++|.-
T Consensus        57 ~~~Rmp~lLivG~snnGKT~Ii~rF~~~h--p~~~d~-----~----~~~~PVv~vq~P~~  106 (302)
T PF05621_consen   57 KRHRMPNLLIVGDSNNGKTMIIERFRRLH--PPQSDE-----D----AERIPVVYVQMPPE  106 (302)
T ss_pred             cccCCCceEEecCCCCcHHHHHHHHHHHC--CCCCCC-----C----CccccEEEEecCCC
Confidence            45677899999999999999999999873  111111     0    11246788888764

TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=97.47  E-value=0.00012  Score=43.28  Aligned_cols=21  Identities=43%  Similarity=0.591  Sum_probs=19.4

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 029158           24 IAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        24 v~~vG~~~~GKSsli~~l~~~   44 (198)
                      |++.|++|+||||+.+.|...
T Consensus         2 i~i~G~~gsGKst~~~~l~~~   22 (69)
T cd02019           2 IAITGGSGSGKSTVAKKLAEQ   22 (69)
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999999875

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional

Probab=97.45  E-value=0.00015  Score=50.93  Aligned_cols=25  Identities=32%  Similarity=0.494  Sum_probs=22.2

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      +.+.+.++|++|||||||++++...
T Consensus         5 ~~~ii~ivG~sgsGKTTLi~~li~~   29 (173)
T PRK10751          5 MIPLLAIAAWSGTGKTTLLKKLIPA   29 (173)
T ss_pred             CceEEEEECCCCChHHHHHHHHHHH
Confidence            5667999999999999999999865

>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family

Probab=97.45  E-value=0.0024  Score=44.37  Aligned_cols=21  Identities=29%  Similarity=0.514  Sum_probs=19.0

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 029158           24 IAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        24 v~~vG~~~~GKSsli~~l~~~   44 (198)
                      |+++|++||||||+.+.|...
T Consensus         1 i~l~G~~GsGKSTla~~l~~~   21 (163)
T TIGR01313         1 FVLMGVAGSGKSTIASALAHR   21 (163)
T ss_pred             CEEECCCCCCHHHHHHHHHHh
Confidence            478999999999999999876

This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.

>PRK14530 adenylate kinase; Provisional

Probab=97.42  E-value=0.00015  Score=53.05  Aligned_cols=24  Identities=25%  Similarity=0.457  Sum_probs=21.5

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      .++|+++|+|||||||+.+.|...
T Consensus         3 ~~~I~i~G~pGsGKsT~~~~La~~   26 (215)
T PRK14530          3 QPRILLLGAPGAGKGTQSSNLAEE   26 (215)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHH
Confidence            468999999999999999999765

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=97.41  E-value=0.00015  Score=51.54  Aligned_cols=25  Identities=16%  Similarity=0.246  Sum_probs=21.8

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      ..+.|+++|++||||||+++.|...
T Consensus         2 ~~~ii~i~G~~GsGKsTl~~~l~~~   26 (188)
T TIGR01360         2 KCKIIFIVGGPGSGKGTQCEKIVEK   26 (188)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHH
Confidence            3568999999999999999999843

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=97.39  E-value=0.00013  Score=56.45  Aligned_cols=24  Identities=25%  Similarity=0.339  Sum_probs=21.1

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCc
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQW   45 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~~   45 (198)
                      --++++||+|||||||++.+.+-+
T Consensus        30 ef~vllGPSGcGKSTlLr~IAGLe   53 (338)
T COG3839          30 EFVVLLGPSGCGKSTLLRMIAGLE   53 (338)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            347999999999999999999863

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=97.38  E-value=0.00015  Score=46.61  Aligned_cols=21  Identities=24%  Similarity=0.420  Sum_probs=19.2

Q ss_pred             CeEEEEcCCCCCHHHHHHHHh
Q 029158           22 PEIAFAGRSNVGKSSMLNALT   42 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~   42 (198)
                      -.++++|++|+|||||++.+.
T Consensus        16 e~v~I~GpSGsGKSTLl~~l~   36 (107)
T cd00820          16 VGVLITGDSGIGKTELALELI   36 (107)
T ss_pred             EEEEEEcCCCCCHHHHHHHhh
Confidence            458999999999999999987

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>PF13521 AAA_28: AAA domain; PDB: 1LW7_A

Probab=97.38  E-value=0.0001  Score=51.40  Aligned_cols=22  Identities=27%  Similarity=0.610  Sum_probs=17.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 029158           23 EIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        23 ~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      ||+++|.+|+|||||++.|...
T Consensus         1 rI~i~G~~stGKTTL~~~L~~~   22 (163)
T PF13521_consen    1 RIVITGGPSTGKTTLIEALAAR   22 (163)
T ss_dssp             -EEEE--TTSHHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHc
Confidence            6899999999999999999865

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=97.38  E-value=0.00016  Score=51.58  Aligned_cols=22  Identities=41%  Similarity=0.522  Sum_probs=20.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 029158           23 EIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        23 ~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      .++++|++|+|||||++.|.+.
T Consensus         4 ~i~l~G~sGsGKsTl~~~l~~~   25 (186)
T PRK10078          4 LIWLMGPSGSGKDSLLAALRQR   25 (186)
T ss_pred             EEEEECCCCCCHHHHHHHHhcc
Confidence            5899999999999999999775

>PRK05480 uridine/cytidine kinase; Provisional

Probab=97.36  E-value=0.00019  Score=52.22  Aligned_cols=26  Identities=23%  Similarity=0.323  Sum_probs=22.9

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           19 PDLPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        19 ~~~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      .....|++.|++|||||||.+.|...
T Consensus         4 ~~~~iI~I~G~sGsGKTTl~~~l~~~   29 (209)
T PRK05480          4 KKPIIIGIAGGSGSGKTTVASTIYEE   29 (209)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            45678999999999999999999875

>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional

Probab=97.36  E-value=0.0019  Score=49.22  Aligned_cols=23  Identities=35%  Similarity=0.433  Sum_probs=20.2

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhc
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTR   43 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~   43 (198)
                      ...|++.|++||||||+++.|..
T Consensus         6 ~~~i~i~G~~GsGKtt~~~~l~~   28 (288)
T PRK05416          6 MRLVIVTGLSGAGKSVALRALED   28 (288)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHH
Confidence            35799999999999999999953

>TIGR00235 udk uridine kinase

Probab=97.36  E-value=0.00016  Score=52.51  Aligned_cols=25  Identities=24%  Similarity=0.283  Sum_probs=21.7

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      ....|+++|++|||||||++.|.+.
T Consensus         5 ~g~vi~I~G~sGsGKSTl~~~l~~~   29 (207)
T TIGR00235         5 KGIIIGIGGGSGSGKTTVARKIYEQ   29 (207)
T ss_pred             CeEEEEEECCCCCCHHHHHHHHHHH
Confidence            3456899999999999999999865

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=97.36  E-value=0.00016  Score=51.14  Aligned_cols=22  Identities=27%  Similarity=0.391  Sum_probs=19.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 029158           23 EIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        23 ~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      .++++|++|||||||++.|...
T Consensus         3 ~~~i~G~sGsGKttl~~~l~~~   24 (179)
T TIGR02322         3 LIYVVGPSGAGKDTLLDYARAR   24 (179)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999998764

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]

Probab=97.35  E-value=8.9e-05  Score=52.08  Aligned_cols=25  Identities=36%  Similarity=0.395  Sum_probs=21.8

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCc
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQW   45 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~~   45 (198)
                      ..-+++.||+|+|||||++.|+...
T Consensus         4 G~l~vlsgPSG~GKsTl~k~L~~~~   28 (191)
T COG0194           4 GLLIVLSGPSGVGKSTLVKALLEDD   28 (191)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhhc
Confidence            3458899999999999999999874

>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.35  E-value=0.00016  Score=51.35  Aligned_cols=23  Identities=26%  Similarity=0.423  Sum_probs=20.3

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      --|+++|++|||||||+|-+.+-
T Consensus        32 e~vv~lGpSGcGKTTLLnl~AGf   54 (259)
T COG4525          32 ELVVVLGPSGCGKTTLLNLIAGF   54 (259)
T ss_pred             CEEEEEcCCCccHHHHHHHHhcC
Confidence            35899999999999999999873

>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]

Probab=97.35  E-value=0.0019  Score=49.09  Aligned_cols=68  Identities=12%  Similarity=0.127  Sum_probs=52.3

Q ss_pred             HHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHH
Q 029158           91 EELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEES  160 (198)
Q Consensus        91 ~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~  160 (198)
                      ...++.+.......|.++-|-||.-+++.....+-+.+.  .+|-|+|+||+||.++.+.....+.++..
T Consensus        34 akalr~i~~~l~~~D~iiEvrDaRiPLssrn~~~~~~~~--~k~riiVlNK~DLad~~~~k~~iq~~~~~  101 (335)
T KOG2485|consen   34 AKALRAIQNRLPLVDCIIEVRDARIPLSSRNELFQDFLP--PKPRIIVLNKMDLADPKEQKKIIQYLEWQ  101 (335)
T ss_pred             HHHHHHHHhhcccccEEEEeeccccCCccccHHHHHhcC--CCceEEEEecccccCchhhhHHHHHHHhh
Confidence            444556666667799999999999988887766666665  68899999999999977666666665554

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=97.34  E-value=0.00024  Score=47.48  Aligned_cols=23  Identities=30%  Similarity=0.510  Sum_probs=21.2

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      ..++++|++|+||||++..++..
T Consensus         3 ~~~~l~G~~G~GKTtl~~~l~~~   25 (148)
T smart00382        3 EVILIVGPPGSGKTTLARALARE   25 (148)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhc
Confidence            56899999999999999999886

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.32  E-value=0.00026  Score=50.96  Aligned_cols=25  Identities=40%  Similarity=0.590  Sum_probs=20.5

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhc
Q 029158           19 PDLPEIAFAGRSNVGKSSMLNALTR   43 (198)
Q Consensus        19 ~~~~~v~~vG~~~~GKSsli~~l~~   43 (198)
                      +.....+++||+|||||||++.|-.
T Consensus        31 ~~~~VTAlIGPSGcGKST~LR~lNR   55 (253)
T COG1117          31 PKNKVTALIGPSGCGKSTLLRCLNR   55 (253)
T ss_pred             cCCceEEEECCCCcCHHHHHHHHHh
Confidence            3445679999999999999988754

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=97.32  E-value=0.0002  Score=51.10  Aligned_cols=24  Identities=33%  Similarity=0.484  Sum_probs=21.7

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      ...++++|++|||||||++.|++.
T Consensus        25 g~~i~I~G~tGSGKTTll~aL~~~   48 (186)
T cd01130          25 RKNILISGGTGSGKTTLLNALLAF   48 (186)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhh
Confidence            457999999999999999999875

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.31  E-value=0.0002  Score=52.27  Aligned_cols=24  Identities=33%  Similarity=0.429  Sum_probs=21.2

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      --.|+++|++|+|||||++++-+.
T Consensus        30 GE~VaiIG~SGaGKSTLLR~lngl   53 (258)
T COG3638          30 GEMVAIIGPSGAGKSTLLRSLNGL   53 (258)
T ss_pred             CcEEEEECCCCCcHHHHHHHHhcc
Confidence            346899999999999999999875

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=97.31  E-value=0.00019  Score=47.64  Aligned_cols=21  Identities=24%  Similarity=0.509  Sum_probs=19.3

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 029158           24 IAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        24 v~~vG~~~~GKSsli~~l~~~   44 (198)
                      |++.|.+||||||+++.|...
T Consensus         1 I~i~G~~GsGKtTia~~L~~~   21 (129)
T PF13238_consen    1 IGISGIPGSGKTTIAKELAER   21 (129)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEECCCCCCHHHHHHHHHHH
Confidence            689999999999999999875

...

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=97.31  E-value=0.00022  Score=50.38  Aligned_cols=24  Identities=25%  Similarity=0.181  Sum_probs=20.7

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhc
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTR   43 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~   43 (198)
                      .--.++++|+.|+|||||++.++.
T Consensus        20 ~G~~~~l~G~nG~GKSTLl~~il~   43 (176)
T cd03238          20 LNVLVVVTGVSGSGKSTLVNEGLY   43 (176)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhh
Confidence            445789999999999999998864

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>PRK06217 hypothetical protein; Validated

Probab=97.30  E-value=0.00023  Score=50.63  Aligned_cols=23  Identities=26%  Similarity=0.394  Sum_probs=20.9

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      .+|+++|.+|||||||...|...
T Consensus         2 ~~I~i~G~~GsGKSTla~~L~~~   24 (183)
T PRK06217          2 MRIHITGASGSGTTTLGAALAER   24 (183)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            46999999999999999999865

>PF02263 GBP: Guanylate-binding protein, N-terminal domain; InterPro: IPR015894 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma

Probab=97.28  E-value=0.0008  Score=50.65  Aligned_cols=62  Identities=21%  Similarity=0.211  Sum_probs=43.2

Q ss_pred             CCCCCeEEEEcCCCCCHHHHHHHHhcCccceee-cCCCCceeEEEEEEe------CCceEEEeCCCCcc
Q 029158           18 APDLPEIAFAGRSNVGKSSMLNALTRQWGVVRT-SDKPGLTQTINFFKL------GTKLCLVDLPGYGF   79 (198)
Q Consensus        18 ~~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~-~~~~~~t~~~~~~~~------~~~~~iiDtpG~~~   79 (198)
                      +.+...|.++|+..+|||.|+|.|++....... ....++|..+-.+..      ...+.++||.|+++
T Consensus        18 ~~~v~vvsi~G~~rtGKSfLln~l~~~~~gF~~~~~~~~~T~Giw~w~~~~~~~~~~~v~llDteG~~~   86 (260)
T PF02263_consen   18 DQPVAVVSIVGPYRTGKSFLLNQLLGPQSGFSWGPTVEPCTKGIWMWSEPLPDGEKVAVVLLDTEGLGD   86 (260)
T ss_dssp             TSBEEEEEEEEETTSSHHHHHHHHCCBSSSSESSSCSSST-SCEEEECCE-TTSTCEEEEEEEEECBTT
T ss_pred             CCCEEEEEeecCCccchHHHHHHHhcccccccccCCCCCCCcceeeeecccccccceeEEEecchhccc
Confidence            345567999999999999999999976322222 223456766544332      35699999999877

GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function, and an alpha-helical finger-like C-terminal domain (IPR003191 from INTERPRO). Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3QOF_A 3Q5E_C 3QNU_A 3Q5D_A 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.

>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]

Probab=97.26  E-value=0.00024  Score=48.09  Aligned_cols=26  Identities=27%  Similarity=0.523  Sum_probs=23.1

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           19 PDLPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        19 ~~~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      -..|+|++.|.||+|||||..++...
T Consensus         5 r~~PNILvtGTPG~GKstl~~~lae~   30 (176)
T KOG3347|consen    5 RERPNILVTGTPGTGKSTLAERLAEK   30 (176)
T ss_pred             hcCCCEEEeCCCCCCchhHHHHHHHH
Confidence            45789999999999999999999854

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=97.25  E-value=0.00025  Score=50.15  Aligned_cols=25  Identities=24%  Similarity=0.384  Sum_probs=22.2

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      .--.++++|+.|+|||||++.+.+.
T Consensus        24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl   48 (177)
T cd03222          24 EGEVIGIVGPNGTGKTTAVKILAGQ   48 (177)
T ss_pred             CCCEEEEECCCCChHHHHHHHHHcC
Confidence            3447899999999999999999986

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK03839 putative kinase; Provisional

Probab=97.25  E-value=0.00027  Score=50.13  Aligned_cols=22  Identities=32%  Similarity=0.520  Sum_probs=20.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 029158           23 EIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        23 ~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      +|+++|+|||||||+...|...
T Consensus         2 ~I~l~G~pGsGKsT~~~~La~~   23 (180)
T PRK03839          2 IIAITGTPGVGKTTVSKLLAEK   23 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999999876

>PRK00300 gmk guanylate kinase; Provisional

Probab=97.25  E-value=0.00035  Score=50.54  Aligned_cols=25  Identities=32%  Similarity=0.424  Sum_probs=21.9

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      ....|+++|++|||||||++.|.+.
T Consensus         4 ~g~~i~i~G~sGsGKstl~~~l~~~   28 (205)
T PRK00300          4 RGLLIVLSGPSGAGKSTLVKALLER   28 (205)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhh
Confidence            3456899999999999999999886

>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []

Probab=97.24  E-value=0.0026  Score=48.07  Aligned_cols=148  Identities=14%  Similarity=0.208  Sum_probs=67.5

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEeCCceEEEeCC-------CCccccchhHHHHHHHHHH
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLP-------GYGFAYAKEEVKDAWEELV   94 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~iiDtp-------G~~~~~~~~~~~~~~~~~~   94 (198)
                      |-|+++|.|+|||||+.+.|...-  ..               .+..+.+++..       .+.+.......+......+
T Consensus         2 pLiil~G~P~SGKTt~a~~L~~~~--~~---------------~~~~v~~i~~~~~~~~~~~y~~~~~Ek~~R~~l~s~v   64 (270)
T PF08433_consen    2 PLIILCGLPCSGKTTRAKELKKYL--EE---------------KGKEVVIISDDSLGIDRNDYADSKKEKEARGSLKSAV   64 (270)
T ss_dssp             -EEEEE--TTSSHHHHHHHHHHHH--HH---------------TT--EEEE-THHHH-TTSSS--GGGHHHHHHHHHHHH
T ss_pred             EEEEEEcCCCCcHHHHHHHHHHHH--Hh---------------cCCEEEEEcccccccchhhhhchhhhHHHHHHHHHHH
Confidence            568999999999999999998641  11               11222333321       1211111222333333333


Q ss_pred             HHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHH-----------HHHHHHHHHHHHh
Q 029158           95 KEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDV-----------ARRAMQIEESLKA  163 (198)
Q Consensus        95 ~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~-----------~~~~~~~~~~~~~  163 (198)
                      ...+..    + -++++|...-....-.+++...+..+.+.++|--.+++......           ++....+..+++.
T Consensus        65 ~r~ls~----~-~iVI~Dd~nYiKg~RYelyclAr~~~~~~c~i~~~~~~e~~~~~N~~R~~~~~~~~e~i~~m~~RfE~  139 (270)
T PF08433_consen   65 ERALSK----D-TIVILDDNNYIKGMRYELYCLARAYGTTFCVIYCDCPLETCLQRNSKRPEPERYPEETIDDMIQRFEE  139 (270)
T ss_dssp             HHHHTT------SEEEE-S---SHHHHHHHHHHHHHTT-EEEEEEEE--HHHHHHHHHHTT-S--S-HHHHHHHHHH---
T ss_pred             HHhhcc----C-eEEEEeCCchHHHHHHHHHHHHHHcCCCEEEEEECCCHHHHHHhhhccCCCCCCCHHHHHHHHHHhcC
Confidence            333322    2 45568887533334455667777778998888888875432211           2233344444432


Q ss_pred             ccC---CCCCcEEec-cCCCCChHHHHHHHHH
Q 029158          164 NNS---LVQPVMMVS-SKSGAGIRSLRTVLSK  191 (198)
Q Consensus       164 ~~~---~~~~v~~~S-a~~~~gi~~l~~~i~~  191 (198)
                      -..   ...|.|.+. ......++++.+.|..
T Consensus       140 P~~~nrWD~plf~i~~~~~~~~~~~I~~~l~~  171 (270)
T PF08433_consen  140 PDPKNRWDSPLFTIDSSDEELPLEEIWNALFE  171 (270)
T ss_dssp             TTSS-GGGS-SEEEE-TTS---HHHHHHHHHH
T ss_pred             CCCCCCccCCeEEEecCCCCCCHHHHHHHHHh
Confidence            221   135677777 5566677888887743

The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.

>cd01131 PilT Pilus retraction ATPase PilT

Probab=97.24  E-value=0.00024  Score=51.24  Aligned_cols=22  Identities=27%  Similarity=0.389  Sum_probs=19.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 029158           23 EIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        23 ~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      -|+++|++||||||+++++++.
T Consensus         3 lilI~GptGSGKTTll~~ll~~   24 (198)
T cd01131           3 LVLVTGPTGSGKSTTLAAMIDY   24 (198)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4799999999999999998865

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>cd03110 Fer4_NifH_child This protein family's function is unkown

Probab=97.23  E-value=0.0037  Score=44.15  Aligned_cols=66  Identities=17%  Similarity=0.053  Sum_probs=44.4

Q ss_pred             CCceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCC
Q 029158           66 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV  145 (198)
Q Consensus        66 ~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~  145 (198)
                      .+.+.++|||+....            .....+   ..+|.+++++..+.........+++.+...+.|+.+|+||+|..
T Consensus        92 ~~d~viiDtpp~~~~------------~~~~~l---~~aD~vliv~~~~~~~~~~~~~~~~~l~~~~~~~~vV~N~~~~~  156 (179)
T cd03110          92 GAELIIIDGPPGIGC------------PVIASL---TGADAALLVTEPTPSGLHDLERAVELVRHFGIPVGVVINKYDLN  156 (179)
T ss_pred             CCCEEEEECcCCCcH------------HHHHHH---HcCCEEEEEecCCcccHHHHHHHHHHHHHcCCCEEEEEeCCCCC
Confidence            578999999964221            111222   23899999998875322233455666777788899999999976


Q ss_pred             C
Q 029158          146 F  146 (198)
Q Consensus       146 ~  146 (198)
                      .
T Consensus       157 ~  157 (179)
T cd03110         157 D  157 (179)
T ss_pred             c
Confidence            4

It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=97.23  E-value=0.00024  Score=51.16  Aligned_cols=21  Identities=33%  Similarity=0.548  Sum_probs=19.3

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 029158           24 IAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        24 v~~vG~~~~GKSsli~~l~~~   44 (198)
                      |+++|++|||||||++.|.+.
T Consensus         2 igi~G~~GsGKSTl~~~l~~~   22 (198)
T cd02023           2 IGIAGGSGSGKTTVAEEIIEQ   22 (198)
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999999775

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=97.23  E-value=0.0003  Score=51.17  Aligned_cols=24  Identities=25%  Similarity=0.300  Sum_probs=21.7

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      --.++++|+.|+|||||++.|.+.
T Consensus        27 G~~~~l~G~nGsGKSTLl~~l~G~   50 (211)
T cd03225          27 GEFVLIVGPNGSGKSTLLRLLNGL   50 (211)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhcC
Confidence            446899999999999999999986

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>PRK13949 shikimate kinase; Provisional

Probab=97.22  E-value=0.0003  Score=49.41  Aligned_cols=23  Identities=30%  Similarity=0.491  Sum_probs=20.8

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      .+|+++|++||||||+...|...
T Consensus         2 ~~I~liG~~GsGKstl~~~La~~   24 (169)
T PRK13949          2 ARIFLVGYMGAGKTTLGKALARE   24 (169)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999998875

>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]

Probab=97.22  E-value=0.0021  Score=50.54  Aligned_cols=26  Identities=19%  Similarity=0.327  Sum_probs=22.2

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           19 PDLPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        19 ~~~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      ....+++++|+.+||||||...|.+.
T Consensus        71 ~~~~~vmvvG~vDSGKSTLt~~LaN~   96 (398)
T COG1341          71 GKVGVVMVVGPVDSGKSTLTTYLANK   96 (398)
T ss_pred             cCCcEEEEECCcCcCHHHHHHHHHHH
Confidence            35678999999999999998887764

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=97.22  E-value=0.00031  Score=51.30  Aligned_cols=25  Identities=24%  Similarity=0.317  Sum_probs=22.3

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      .--.++++|+.|+|||||++.+.+.
T Consensus        28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl   52 (216)
T TIGR00960        28 KGEMVFLVGHSGAGKSTFLKLILGI   52 (216)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            3457899999999999999999986

>PRK14531 adenylate kinase; Provisional

Probab=97.21  E-value=0.00036  Score=49.68  Aligned_cols=24  Identities=21%  Similarity=0.326  Sum_probs=21.3

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      ..+|+++|+|||||||+...|...
T Consensus         2 ~~~i~i~G~pGsGKsT~~~~la~~   25 (183)
T PRK14531          2 KQRLLFLGPPGAGKGTQAARLCAA   25 (183)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHH
Confidence            457999999999999999998765

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=97.21  E-value=0.00031  Score=52.00  Aligned_cols=25  Identities=28%  Similarity=0.327  Sum_probs=22.1

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      .--.++++|+.|+|||||++.+.+.
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~l~G~   49 (235)
T cd03261          25 RGEILAIIGPSGSGKSTLLRLIVGL   49 (235)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            3446899999999999999999986

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK08233 hypothetical protein; Provisional

Probab=97.21  E-value=0.00033  Score=49.53  Aligned_cols=23  Identities=30%  Similarity=0.374  Sum_probs=20.6

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      ..|++.|.+|||||||.+.|...
T Consensus         4 ~iI~I~G~~GsGKtTla~~L~~~   26 (182)
T PRK08233          4 KIITIAAVSGGGKTTLTERLTHK   26 (182)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhh
Confidence            56888999999999999999875

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=97.21  E-value=0.00032  Score=51.30  Aligned_cols=25  Identities=36%  Similarity=0.391  Sum_probs=22.2

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      .--.++++|+.|+|||||++.|++.
T Consensus        29 ~G~~~~l~G~nGsGKSTLl~~i~Gl   53 (218)
T cd03255          29 KGEFVAIVGPSGSGKSTLLNILGGL   53 (218)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCC
Confidence            3446899999999999999999986

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	198
3pqc_A	195	Crystal Structure Of Thermotoga Maritima Ribosome B		6e-26
1pui_A	210	Structure Of Engb Gtpase Length = 210		9e-26
1sul_A	195	Crystal Structure Of The Apo-Ysxc Length = 195		2e-25
4dhe_A	223	Crystal Structure Of A Probable Gtp-Binding Protein		3e-20
3a1w_A	168	Crystal Structue Of The G Domain Of T. Maritima Feo		5e-07
3a1t_A	258	Crystal Structue Of The Cytosolic Domain Of T. Mari		8e-07
4ac9_A	482	Crystal Structure Of Translation Elongation Factor		2e-05
3a1s_A	258	Crystal Structue Of The Cytosolic Domain Of T. Mari		2e-05
1puj_A	282	Structure Of B. Subtilis Ylqf Gtpase Length = 282		3e-05
2cxx_A	190	Crystal Structure Of A Probable Gtp-binding Protein		3e-05
3qq5_A	423	Crystal Structure Of The [fefe]-Hydrogenase Maturat		2e-04
2dyk_A	161	Crystal Structure Of N-Terminal Gtp-Binding Domain		6e-04

>pdb|3PQC|A Chain A, Crystal Structure Of Thermotoga Maritima Ribosome Biogenesis Gtp- Binding Protein Engb (YsxcYIHA) IN COMPLEX WITH GDP Length = 195

Iteration: 1
 Score =  113 bits (283), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 69/194 (35%), Positives = 111/194 (57%), Gaps = 9/194 (4%)
Query: 4   LEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF 63
           +E    A+    +P P   E+AF GRSNVGKSS+LNAL  +  +   S  PG T++INF+
Sbjct: 6   VELVKVARTPGDYPPPLKGEVAFVGRSNVGKSSLLNALFNR-KIAFVSKTPGKTRSINFY 64
Query: 64  KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHE 123
            + +K   VDLPGYG+A   ++ +  W+ LV++Y   R SL+ V LL+D +  + P+D +
Sbjct: 65  LVNSKYYFVDLPGYGYAKVSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGR--IPPQDSD 122
Query: 124 L--ISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQ-PVMMVSSKSGA 180
           L  +  M+     + +VLTK D V    ++ RA ++EE  K  +   +  ++  SS +G 
Sbjct: 123 LMMVEWMKSLNIPFTIVLTKMDKV---KMSERAKKLEEHRKVFSKYGEYTIIPTSSVTGE 179
Query: 181 GIRSLRTVLSKIAR 194
           GI  L  ++S + +
Sbjct: 180 GISELLDLISTLLK 193

>pdb|1PUI|A Chain A, Structure Of Engb Gtpase Length = 210

Iteration: 1
 Score =  113 bits (282), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 74/188 (39%), Positives = 100/188 (53%), Gaps = 5/188 (2%)
Query: 5   EFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK 64
            F  +A      P+    E+AFAGRSN GKSS LN LT Q  + RTS  PG TQ IN F+
Sbjct: 10  HFVMSAPDIRHLPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFE 69
Query: 65  LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHEL 124
           +     LVDLPGYG+A   EE+K  W+  + EY+  R SL+ + +L+D +  +K  D ++
Sbjct: 70  VADGKRLVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQM 129
Query: 125 ISLMERSQTKYQVVLTKTDTVFPIDVARRAM--QIEESLKANNSLVQPVMMVSSKSGAGI 182
           I     S     V+LTK D +     AR+A    + E++ A N  VQ V   SS    G+
Sbjct: 130 IEWAVDSNIAVLVLLTKADKL--ASGARKAQLNMVREAVLAFNGDVQ-VETFSSLKKQGV 186
Query: 183 RSLRTVLS 190
             LR  L 
Sbjct: 187 DKLRQKLD 194

>pdb|1SUL|A Chain A, Crystal Structure Of The Apo-Ysxc Length = 195

Iteration: 1
 Score =  111 bits (278), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 55/145 (37%), Positives = 84/145 (57%)
Query: 1   MNKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI 60
           + K E   +A     +P   LPEIA AGRSNVGKSS +N+L  +  + RTS KPG TQT+
Sbjct: 3   VTKSEIVISAVKPEQYPEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTL 62
Query: 61  NFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPR 120
           NF+ +  +L  VD+PGYGFA   +  ++AW  +++ Y++TR  LK V  ++D +      
Sbjct: 63  NFYIINDELHFVDVPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSND 122
Query: 121 DHELISLMERSQTKYQVVLTKTDTV 145
           D ++   ++       V+ TK D +
Sbjct: 123 DVQMYEFLKYYGIPVIVIATKADKI 147

>pdb|4DHE|A Chain A, Crystal Structure Of A Probable Gtp-Binding Protein Engb From Burkholderia Thailandensis Length = 223

Iteration: 1
 Score = 94.7 bits (234), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 53/147 (36%), Positives = 73/147 (49%), Gaps = 4/147 (2%)
Query: 1   MNKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI 60
           +++  FF         P    PEIAFAGRSN GKS+ +N L  Q  +   S  PG TQ I
Sbjct: 9   LHQARFFTTVNHLRDLPPTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHI 68
Query: 61  NFFKLGTK----LCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG 116
           N+F +G        LVDLPGYG+A      K  WE+L+  Y+ TR  L  + L++D +  
Sbjct: 69  NYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRP 128
Query: 117 VKPRDHELISLMERSQTKYQVVLTKTD 143
           +   D  +I     +      +LTK D
Sbjct: 129 LTELDRRMIEWFAPTGKPIHSLLTKCD 155

>pdb|3A1W|A Chain A, Crystal Structue Of The G Domain Of T. Maritima Feob Iron Iransporter Length = 168

Iteration: 1
 Score = 50.8 bits (120), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 54/182 (29%), Positives = 83/182 (45%), Gaps = 29/182 (15%)
Query: 23  EIAFAGRSNVGKSSMLNALT------RQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPG 76
           ++A AG  NVGK+S+ NALT        W  V    K G+     F   G  + L+DLPG
Sbjct: 7   KVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGV-----FTYKGYTINLIDLPG 61
Query: 77  -YGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKY 135
            Y   Y+  + K A + L+K           V L+ D+   V P +  L  L+E  + + 
Sbjct: 62  TYSLGYSSIDEKIARDYLLKG------DADLVILVADS---VNP-EQSLYLLLEILEMEK 111
Query: 136 QVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIARF 195
           +V+L  T     ID A++     +  +    L  PV+  SS +G G+  L+    KI  +
Sbjct: 112 KVILAMT----AIDEAKKTGMKIDRYELQKHLGIPVVFTSSVTGEGLEELK---EKIVEY 164
Query: 196 AK 197
           A+
Sbjct: 165 AQ 166

>pdb|3A1T|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima Feob Iron Iransporter In Gdp Form Ii Length = 258

Iteration: 1
 Score = 50.1 bits (118), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 54/181 (29%), Positives = 82/181 (45%), Gaps = 29/181 (16%)
Query: 24  IAFAGRSNVGKSSMLNALT------RQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPG- 76
           +A AG  NVGK+S+ NALT        W  V    K G+     F   G  + L+DLPG 
Sbjct: 8   VALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGV-----FTYKGYTINLIDLPGT 62
Query: 77  YGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQ 136
           Y   Y+  + K A + L+K           V L+ D+   V P +  L  L+E  + + +
Sbjct: 63  YSLGYSSIDEKIARDYLLKG------DADLVILVADS---VNP-EQSLYLLLEILEMEKK 112
Query: 137 VVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIARFA 196
           V+L  T     ID A++     +  +    L  PV+  SS +G G+  L+    KI  +A
Sbjct: 113 VILAMT----AIDEAKKTGMKIDRYELQKHLGIPVVFTSSVTGEGLEELK---EKIVEYA 165
Query: 197 K 197
           +
Sbjct: 166 Q 166

>pdb|4AC9|A Chain A, Crystal Structure Of Translation Elongation Factor Selb From Methanococcus Maripaludis In Complex With Gdp Length = 482

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/184 (23%), Positives = 84/184 (45%), Gaps = 24/184 (13%)
Query: 17  PAPDLPEIAFA--GRSNVGKSSMLNALTR-----QWGVVRTSDKPGLTQTINF--FKL-G 66
           P  D   I     G  + GK+++   LT          +  S K G+T  I F  FKL  
Sbjct: 13  PHMDFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN 72
Query: 67  TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELIS 126
            ++ LVD PG+              +L++  VS    +    +++D K G K +  E + 
Sbjct: 73  YRITLVDAPGHA-------------DLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHML 119
Query: 127 LMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQ-PVMMVSSKSGAGIRSL 185
           +++       VV+TK+D     ++ R  M ++  L++ ++L    ++ +S+K+G G+  L
Sbjct: 120 ILDHFNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAKTGFGVDEL 179
Query: 186 RTVL 189
           + ++
Sbjct: 180 KNLI 183

>pdb|3A1S|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima Feob Iron Iransporter In Gdp Form I Length = 258

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 53/181 (29%), Positives = 78/181 (43%), Gaps = 29/181 (16%)
Query: 24  IAFAGRSNVGKSSMLNALT------RQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPG- 76
           +A AG  NVGK+S+ NALT        W  V    K G+     F   G  + L+DLPG 
Sbjct: 8   VALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGV-----FTYKGYTINLIDLPGT 62
Query: 77  YGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQ 136
           Y   Y+  + K A + L+K           V L+ D+   V P     + L      K +
Sbjct: 63  YSLGYSSIDEKIARDYLLKG------DADLVILVADS---VNPEQSLYLLLEILEXEK-K 112
Query: 137 VVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIARFA 196
           V+L  T     ID A++     +  +    L  PV+  SS +G G+  L+    KI  +A
Sbjct: 113 VILAXT----AIDEAKKTGXKIDRYELQKHLGIPVVFTSSVTGEGLEELK---EKIVEYA 165
Query: 197 K 197
           +
Sbjct: 166 Q 166

>pdb|1PUJ|A Chain A, Structure Of B. Subtilis Ylqf Gtpase Length = 282

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 34/49 (69%), Gaps = 1/49 (2%)
Query: 28  GRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPG 76
           G  NVGKS+++N L ++  + +T D+PG+T +  + K+G +L L+D PG
Sbjct: 127 GIPNVGKSTLINRLAKK-NIAKTGDRPGITTSQQWVKVGKELELLDTPG 174

>pdb|2CXX|A Chain A, Crystal Structure Of A Probable Gtp-binding Protein Engb Length = 190

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 50/189 (26%), Positives = 82/189 (43%), Gaps = 27/189 (14%)
Query: 24  IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYA- 82
           I FAGRSNVGKS+++  LT +   VR   +PG+T+ I   +      ++D PG+GF    
Sbjct: 4   IIFAGRSNVGKSTLIYRLTGKK--VRRGKRPGVTRKIIEIEWKNH-KIIDXPGFGFXXGL 60
Query: 83  ----KEEVKDAWEELVKEYVSTRVSLKRVCLLIDTK--------W---GVKPRDHELISL 127
               +E +KD   E+V        ++    L++D K        W   G  P D E    
Sbjct: 61  PKEVQERIKD---EIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQF 117
Query: 128 MERSQTKYQVVLTKTDTVFPID--VARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSL 185
           +        V + K D +  +   +   A + E  L   + +  P   +S+K G  I  L
Sbjct: 118 LRELDIPTIVAVNKLDKIKNVQEVINFLAEKFEVPLSEIDKVFIP---ISAKFGDNIERL 174
Query: 186 RTVLSKIAR 194
           +  + ++ R
Sbjct: 175 KNRIFEVIR 183

>pdb|3QQ5|A Chain A, Crystal Structure Of The [fefe]-Hydrogenase Maturation Protein Hydf Length = 423

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/129 (30%), Positives = 60/129 (46%), Gaps = 19/129 (14%)
Query: 24  IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT-----QTINFFKLGTKLCLVDLPGYG 78
           I  AGR NVGKSS +NAL  Q  V   SD  G T     +++    +G  + LVD PG  
Sbjct: 37  IVVAGRRNVGKSSFMNALVGQ-NVSIVSDYAGTTTDPVYKSMELHPIGP-VTLVDTPGL- 93
Query: 79  FAYAKEEVKDAWEELVKEYV--STRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQ 136
                    D   EL +  V  + RV  +  C ++ T     P + ++++L +  +  + 
Sbjct: 94  ---------DDVGELGRLRVEKARRVFYRADCGILVTDSAPTPYEDDVVNLFKEMEIPFV 144
Query: 137 VVLTKTDTV 145
           VV+ K D +
Sbjct: 145 VVVNKIDVL 153

>pdb|2DYK|A Chain A, Crystal Structure Of N-Terminal Gtp-Binding Domain Of Enga From Thermus Thermophilus Hb8 Length = 161

Iteration: 1
 Score = 40.4 bits (93), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 58/127 (45%), Gaps = 12/127 (9%)
Query: 21  LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGT---KLCLVDLPGY 77
           + ++   GR NVGKSS+ N L ++   V  +D PG+T+ +    + T   +  LVD  G 
Sbjct: 1   MHKVVIVGRPNVGKSSLFNRLLKKRSAV-VADVPGVTRDLKEGVVETDRGRFLLVDTGGL 59
Query: 78  GFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLL-IDTKWGVKPRDHELISLMERSQTKYQ 136
                     D WE+ ++E V   +    V L  +D +  +   D+E+   + R      
Sbjct: 60  WSG-------DKWEKKIQEKVDRALEDAEVVLFAVDGRAELTQADYEVAEYLRRKGKPVI 112
Query: 137 VVLTKTD 143
           +V TK D
Sbjct: 113 LVATKVD 119

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	198
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	1e-66
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	3e-66
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	6e-65
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	4e-63
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	2e-41
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	9e-23
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	4e-14
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	4e-09
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	2e-08
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	4e-08
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	7e-08
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	1e-07
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	2e-07
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	3e-07
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	3e-07
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	4e-07
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	4e-07
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	6e-07
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	8e-07
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	9e-07
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	1e-06
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	2e-06
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	2e-06
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	3e-06
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	3e-06
2wji_A	165	Ferrous iron transport protein B homolog; membrane	3e-06
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	6e-06
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	1e-05
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	2e-05
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	2e-05
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	3e-05
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	4e-05
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	5e-05
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	4e-05
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	6e-05
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	5e-05
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	1e-04
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	1e-04

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 Length = 210

 Score =  202 bits (516), Expect = 1e-66
 Identities = 70/191 (36%), Positives = 97/191 (50%), Gaps = 1/191 (0%)

Query: 2   NKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN 61
            +  F  +A      P+    E+AFAGRSN GKSS LN LT Q  + RTS  PG TQ IN
Sbjct: 7   QQTHFVMSAPDIRHLPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLIN 66

Query: 62  FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD 121
            F++     LVDLPGYG+A   EE+K  W+  + EY+  R SL+ + +L+D +  +K  D
Sbjct: 67  LFEVADGKRLVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLD 126

Query: 122 HELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAG 181
            ++I     S     V+LTK D +       +   + E++ A N  V  V   SS    G
Sbjct: 127 QQMIEWAVDSNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDV-QVETFSSLKKQG 185

Query: 182 IRSLRTVLSKI 192
           +  LR  L   
Sbjct: 186 VDKLRQKLDTW 196

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A* Length = 195

 Score =  200 bits (512), Expect = 3e-66
 Identities = 61/191 (31%), Positives = 101/191 (52%), Gaps = 2/191 (1%)

Query: 2   NKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN 61
            K E   +A     +P   LPEIA AGRSNVGKSS +N+L  +  + RTS KPG TQT+N
Sbjct: 4   TKSEIVISAVKPEQYPEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLN 63

Query: 62  FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD 121
           F+ +  +L  VD+PGYGFA   +  ++AW  +++ Y++TR  LK V  ++D +      D
Sbjct: 64  FYIINDELHFVDVPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDD 123

Query: 122 HELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAG 181
            ++   ++       V+ TK D +      + A  + ++L  +      +++ SS++  G
Sbjct: 124 VQMYEFLKYYGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPE--DELILFSSETKKG 181

Query: 182 IRSLRTVLSKI 192
                  + K+
Sbjct: 182 KDEAWGAIKKM 192

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A Length = 195

 Score =  197 bits (503), Expect = 6e-65
 Identities = 63/191 (32%), Positives = 102/191 (53%), Gaps = 3/191 (1%)

Query: 2   NKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN 61
             +E    A+    +P P   E+AF GRSNVGKSS+LNAL  +  +   S  PG T++IN
Sbjct: 4   RDVELVKVARTPGDYPPPLKGEVAFVGRSNVGKSSLLNALFNR-KIAFVSKTPGKTRSIN 62

Query: 62  FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD 121
           F+ + +K   VDLPGYG+A   ++ +  W+ LV++Y   R SL+ V LL+D +   +  D
Sbjct: 63  FYLVNSKYYFVDLPGYGYAKVSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSD 122

Query: 122 HELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAG 181
             ++  M+     + +VLTK D V   + A++  +  +           ++  SS +G G
Sbjct: 123 LMMVEWMKSLNIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEY--TIIPTSSVTGEG 180

Query: 182 IRSLRTVLSKI 192
           I  L  ++S +
Sbjct: 181 ISELLDLISTL 191

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis} Length = 223

 Score =  194 bits (494), Expect = 4e-63
 Identities = 60/201 (29%), Positives = 88/201 (43%), Gaps = 8/201 (3%)

Query: 2   NKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN 61
           ++  FF         P    PEIAFAGRSN GKS+ +N L  Q  +   S  PG TQ IN
Sbjct: 10  HQARFFTTVNHLRDLPPTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHIN 69

Query: 62  FFKLG----TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGV 117
           +F +G        LVDLPGYG+A      K  WE+L+  Y+ TR  L  + L++D +  +
Sbjct: 70  YFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPL 129

Query: 118 KPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQP----VMM 173
              D  +I     +      +LTK D +   +        ++SL A           V +
Sbjct: 130 TELDRRMIEWFAPTGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAGYAGKLTVQL 189

Query: 174 VSSKSGAGIRSLRTVLSKIAR 194
            S+    G+     ++    R
Sbjct: 190 FSALKRTGLDDAHALIESWLR 210

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8 Length = 190

 Score =  137 bits (347), Expect = 2e-41
 Identities = 41/185 (22%), Positives = 82/185 (44%), Gaps = 17/185 (9%)

Query: 21  LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFA 80
           +  I FAGRSNVGKS+++  LT +   VR   +PG+T+ I   +      ++D+PG+GF 
Sbjct: 1   MATIIFAGRSNVGKSTLIYRLTGKK--VRRGKRPGVTRKIIEIEWKNHK-IIDMPGFGFM 57

Query: 81  YAKE-EVKDAWEELVKEYVSTRV-SLKRVCLLIDTK-----------WGVKPRDHELISL 127
                EV++  ++ +  ++     ++    L++D K            G  P D E    
Sbjct: 58  MGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQF 117

Query: 128 MERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRT 187
           +        V + K D +  +      +  +  +  +  + +  + +S+K G  I  L+ 
Sbjct: 118 LRELDIPTIVAVNKLDKIKNVQEVINFLAEKFEVPLSE-IDKVFIPISAKFGDNIERLKN 176

Query: 188 VLSKI 192
            + ++
Sbjct: 177 RIFEV 181

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* Length = 413

 Score = 93.2 bits (231), Expect = 9e-23
 Identities = 29/190 (15%), Positives = 56/190 (29%), Gaps = 30/190 (15%)

Query: 22  PEIAFAGRSNVGKSSMLNALTRQWG---VVRTSDKPGLTQTINFFKLG--TKLCLVDLPG 76
             +A  G +  GKSS +N L            +    +T   + +K      +   DLPG
Sbjct: 70  LNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPG 129

Query: 77  YGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQ 136
            G      +           Y+      +    +I +    K  D ++   +   + ++ 
Sbjct: 130 IGSTNFPPD----------TYLEKMKFYEYDFFIIISATRFKKNDIDIAKAISMMKKEFY 179

Query: 137 VVLTKTDTVFPIDVARRAMQ-------------IEESLKANNSLVQPVMMVSSK--SGAG 181
            V TK D+    +                       + + N     P+ ++S+K      
Sbjct: 180 FVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYD 239

Query: 182 IRSLRTVLSK 191
              L   L  
Sbjct: 240 FPVLMDKLIS 249

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana} Length = 423

 Score = 68.5 bits (168), Expect = 4e-14
 Identities = 44/178 (24%), Positives = 78/178 (43%), Gaps = 28/178 (15%)

Query: 24  IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT-----QTINFFKLGTKLCLVDLPGYG 78
           I  AGR NVGKSS +NAL  Q  V   SD  G T     +++    +G  + LVD PG  
Sbjct: 37  IVVAGRRNVGKSSFMNALVGQ-NVSIVSDYAGTTTDPVYKSMELHPIG-PVTLVDTPGL- 93

Query: 79  FAYAKEEVKDAWEELVKEYVSTRVSLKRV---CLLIDTKWGVKPRDHELISLMERSQTKY 135
                ++V +     V+     R    R     L+ D+     P + ++++L +  +  +
Sbjct: 94  -----DDVGELGRLRVE---KARRVFYRADCGILVTDSAPT--PYEDDVVNLFKEMEIPF 143

Query: 136 QVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA 193
            VV+ K D +       +A +++   ++       V++VS+    G   +   +S+I 
Sbjct: 144 VVVVNKIDVLGE-----KAEELKGLYESRYEA--KVLLVSALQKKGFDDIGKTISEIL 194

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* Length = 301

 Score = 54.0 bits (129), Expect = 4e-09
 Identities = 33/172 (19%), Positives = 68/172 (39%), Gaps = 28/172 (16%)

Query: 24  IAFAGRSNVGKSSMLNAL-----TRQWGVVRTSDKPGLTQTINFFKLG-------TKLCL 71
           +   G S +GKS+++N+L       +  +   ++K   T  I    +         +L +
Sbjct: 21  LMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTV 80

Query: 72  VDLPGYGFA----YAKEEVKDAWEELVKEYVSTRVSLKR---------VCLLIDTKWGVK 118
           VD PGYG A       + +    +E  + Y+     L R          C    + +G  
Sbjct: 81  VDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHG 140

Query: 119 PRDHELISLMERSQTKYQV--VLTKTDTVFPIDVARRAMQIEESLKANNSLV 168
            +  + ++ M+    K  +  V+ K DT+   +  R   +I + ++ +N  +
Sbjct: 141 LKPLD-VAFMKAIHNKVNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKI 191

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8 Length = 282

 Score = 51.5 bits (124), Expect = 2e-08
 Identities = 19/46 (41%), Positives = 33/46 (71%), Gaps = 1/46 (2%)

Query: 31  NVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPG 76
           NVGKS+++N L ++  + +T D+PG+T +  + K+G +L L+D PG
Sbjct: 130 NVGKSTLINRLAKK-NIAKTGDRPGITTSQQWVKVGKELELLDTPG 174

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* Length = 262

 Score = 50.7 bits (122), Expect = 4e-08
 Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 1/46 (2%)

Query: 31  NVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPG 76
           N GKS+++N L  +        +PG+T+ I +F L   + ++D PG
Sbjct: 109 NTGKSTIINKLKGK-RASSVGAQPGITKGIQWFSLENGVKILDTPG 153

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str} Length = 368

 Score = 50.7 bits (121), Expect = 7e-08
 Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 5/59 (8%)

Query: 24  IAFAGRSNVGKSSMLNALT-----RQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGY 77
           +   G +NVGKS+ +N +          V+ TS  PG T  +    L  +  L D PG 
Sbjct: 163 VYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEESSLYDTPGI 221

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B* Length = 482

 Score = 49.9 bits (120), Expect = 1e-07
 Identities = 38/192 (19%), Positives = 69/192 (35%), Gaps = 56/192 (29%)

Query: 24  IAFAGRSNVGKSSMLNALTRQWGVVRTSDK------PGLT-----QTINFFKLGTKLCLV 72
           +   G+ NVGKS++LN L  +       D+      PG T     + I     G    +V
Sbjct: 246 MVIVGKPNVGKSTLLNRLLNE-------DRAIVTDIPGTTRDVISEEIVI--RGILFRIV 296

Query: 73  DLPG-----------YGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD 121
           D  G            G     +E++ A                 V  ++D    +   D
Sbjct: 297 DTAGVRSETNDLVERLGIERTLQEIEKA---------------DIVLFVLDASSPLDEED 341

Query: 122 HELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAG 181
            +++  ++    +Y VV+ K D V  I+        EE +K      + ++ +S+  G G
Sbjct: 342 RKILERIK--NKRYLVVINKVDVVEKIN--------EEEIKNKLGTDRHMVKISALKGEG 391

Query: 182 IRSLRTVLSKIA 193
           +  L   + +  
Sbjct: 392 LEKLEESIYRET 403

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A* Length = 272

 Score = 48.8 bits (117), Expect = 2e-07
 Identities = 23/73 (31%), Positives = 30/73 (41%), Gaps = 18/73 (24%)

Query: 24 IAFAGRSNVGKSSMLNALT--RQ----WGVVRTSDKPGLT--QTINFFKLGTKLCLVDLP 75
          IA  G  N GK+S+ N +T   Q    W        PG+T  +     K    L + DLP
Sbjct: 6  IALIGNPNSGKTSLFNLITGHNQRVGNW--------PGVTVERKSGLVKKNKDLEIQDLP 57

Query: 76 G-YGF-AYAKEEV 86
          G Y    Y+ E  
Sbjct: 58 GIYSMSPYSPEAK 70

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} Length = 361

 Score = 48.7 bits (115), Expect = 3e-07
 Identities = 34/172 (19%), Positives = 67/172 (38%), Gaps = 28/172 (16%)

Query: 24  IAFAGRSNVGKSSMLNAL-----TRQWGVVRTSDKPGLTQTINFFKLG-------TKLCL 71
           +   G S +GKS+++N+L       +  +   ++K   T  I    +         +L +
Sbjct: 40  LMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTV 99

Query: 72  VDLPGYGFAYAKE----EVKDAWEELVKEYVSTRVSLKR---------VCLLIDTKWG-- 116
           VD PGYG A         +    +E  + Y+     L R          C    + +G  
Sbjct: 100 VDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHG 159

Query: 117 VKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLV 168
           +KP D   +  +  ++     V+ K DT+   +  R   +I + ++ +N  +
Sbjct: 160 LKPLDVAFMKAIH-NKVNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKI 210

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum} Length = 228

 Score = 47.8 bits (114), Expect = 3e-07
 Identities = 33/186 (17%), Positives = 65/186 (34%), Gaps = 22/186 (11%)

Query: 19  PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLP 75
           P    I  +G  NVGKSS +N ++R    V        T+ +    F     K  ++D P
Sbjct: 27  PHKKTIILSGAPNVGKSSFMNIVSR--ANVDVQSYSFTTKNLYVGHFDHKLNKYQIIDTP 84

Query: 76  GYGFAYAKEEVKDAWEELVKEYVSTRVSLK--RVCLL----IDTKWGVKPRD--HELISL 127
           G         +  A+E      ++T  +L      +L    I  + G+  ++  +   S+
Sbjct: 85  GL--------LDRAFENRNTIEMTTITALAHINGVILFIIDISEQCGLTIKEQINLFYSI 136

Query: 128 MERSQTKYQ-VVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLR 186
                 K   +   K D      ++     + + +  N          S+ +G G+   +
Sbjct: 137 KSVFSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFSSFSTLTGVGVEQAK 196

Query: 187 TVLSKI 192
               ++
Sbjct: 197 ITACEL 202

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus} Length = 161

 Score = 47.1 bits (113), Expect = 4e-07
 Identities = 34/130 (26%), Positives = 57/130 (43%), Gaps = 18/130 (13%)

Query: 21  LPEIAFAGRSNVGKSSMLNALTRQWGVVRTS---DKPGLTQTINFFK---LGTKLCLVDL 74
           + ++   GR NVGKSS+ N L ++    R++   D PG+T+ +          +  LVD 
Sbjct: 1   MHKVVIVGRPNVGKSSLFNRLLKK----RSAVVADVPGVTRDLKEGVVETDRGRFLLVDT 56

Query: 75  PGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCL-LIDTKWGVKPRDHELISLMERSQT 133
            G           D WE+ ++E V   +    V L  +D +  +   D+E+   + R   
Sbjct: 57  GGL-------WSGDKWEKKIQEKVDRALEDAEVVLFAVDGRAELTQADYEVAEYLRRKGK 109

Query: 134 KYQVVLTKTD 143
              +V TK D
Sbjct: 110 PVILVATKVD 119

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus} Length = 369

 Score = 48.4 bits (115), Expect = 4e-07
 Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 4/72 (5%)

Query: 24  IAFAGRSNVGKSSMLNALTRQWG----VVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGF 79
           +   G +NVGKS+ +N +  +      V+ TS  PG T  +    L +   L D PG   
Sbjct: 165 VYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLESGATLYDTPGIIN 224

Query: 80  AYAKEEVKDAWE 91
            +      DA +
Sbjct: 225 HHQMAHFVDARD 236

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* Length = 262

 Score = 47.5 bits (113), Expect = 6e-07
 Identities = 30/157 (19%), Positives = 50/157 (31%), Gaps = 23/157 (14%)

Query: 24  IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFA 80
           +   G+  VGKSS +N+L  +  VVR S                 G  + ++D PG    
Sbjct: 39  VLVLGKGGVGKSSTVNSLIGE-QVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLV-- 95

Query: 81  YAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQ---- 136
                V     EL+K ++  R       LL   +  V   D     ++      +     
Sbjct: 96  -EAGYVNHQALELIKGFLVNR---TIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIW 151

Query: 137 ----VVLTKTDTVFPIDVARRAMQIEESLKANNSLVQ 169
               +VLT      P +     +  E      +  + 
Sbjct: 152 CKTLLVLTHAQFSPPDE-----LSYETFSSKRSDSLL 183

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A* Length = 274

 Score = 47.1 bits (111), Expect = 8e-07
 Identities = 33/172 (19%), Positives = 63/172 (36%), Gaps = 27/172 (15%)

Query: 27  AGRSNVGKSSMLNAL-----------TRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLP 75
            G S +GKS+++N+L                + +T         I    +   L +VD P
Sbjct: 14  VGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTP 73

Query: 76  GYGFAYAKE----EVKDAWEELVKEYVSTRVSLKR---------VCLLIDTKWGVKPRDH 122
           G+G A         V D  +   ++Y++    + R          CL      G   +  
Sbjct: 74  GFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPL 133

Query: 123 ELISLMERSQTKYQV--VLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVM 172
           + I  M+R   K  +  ++ K DT+ P +  +   QI + ++ +   +    
Sbjct: 134 D-IEFMKRLHEKVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKIYEFP 184

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP} Length = 462

 Score = 47.1 bits (113), Expect = 9e-07
 Identities = 39/191 (20%), Positives = 64/191 (33%), Gaps = 56/191 (29%)

Query: 24  IAFAGRSNVGKSSMLNALTRQWGVVRTSDK------PGLT-----QTINFFKLGTKLCLV 72
           +A  GR NVGKSS+LNA ++       SD+      PG T       +     G  + ++
Sbjct: 227 VAIVGRPNVGKSSLLNAWSQ-------SDRAIVTDLPGTTRDVVESQLVVG--GIPVQVL 277

Query: 73  DLPG----------YGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDH 122
           D  G           G   +++    A                 V L ID   G    D 
Sbjct: 278 DTAGIRETSDQVEKIGVERSRQAANTA---------------DLVLLTIDAATGWTTGDQ 322

Query: 123 ELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGI 182
           E+   ++       +V+ K D V    +         +          ++  ++    GI
Sbjct: 323 EIYEQVK--HRPLILVMNKIDLVEKQLITSLEYPENIT---------QIVHTAAAQKQGI 371

Query: 183 RSLRTVLSKIA 193
            SL T + +I 
Sbjct: 372 DSLETAILEIV 382

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A Length = 172

 Score = 45.6 bits (109), Expect = 1e-06
 Identities = 42/191 (21%), Positives = 69/191 (36%), Gaps = 50/191 (26%)

Query: 24  IAFAGRSNVGKSSMLNALTRQ-WGVVRTSDKPGLT-----QTINFFKLGTKLCLVDLPG- 76
           +  AGR N GKSS+LNAL  +   +V  +D  G T     + I+    G  L ++D  G 
Sbjct: 7   VVIAGRPNAGKSSLLNALAGREAAIV--TDIAGTTRDVLREHIHI--DGMPLHIIDTAGL 62

Query: 77  ---------YGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISL 127
                     G   A +E++ A                RV  ++D          E+   
Sbjct: 63  REASDEVERIGIERAWQEIEQA---------------DRVLFMVDGTTTDAVDPAEIWPE 107

Query: 128 MER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRS 184
                 ++    VV  K D               E+L  +      ++ +S+++G G+  
Sbjct: 108 FIARLPAKLPITVVRNKAD------------ITGETLGMSEVNGHALIRLSARTGEGVDV 155

Query: 185 LRTVLSKIARF 195
           LR  L +   F
Sbjct: 156 LRNHLKQSMGF 166

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A* Length = 476

 Score = 46.4 bits (111), Expect = 2e-06
 Identities = 35/193 (18%), Positives = 59/193 (30%), Gaps = 55/193 (28%)

Query: 24  IAFAGRSNVGKSSMLNALTRQWGVVRTSDK------PGLT-----QTINFFKLGTKLCLV 72
              AG+ N GKS++LN L  Q       ++      PG T     +        T   L 
Sbjct: 236 TVIAGKPNAGKSTLLNTLLGQ-------ERAIVSHMPGTTRDYIEECFIH--DKTMFRLT 286

Query: 73  DLPG----------YGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDH 122
           D  G           G   ++ ++ +A                 +  L+D        + 
Sbjct: 287 DTAGLREAGEEIEHEGIRRSRMKMAEA---------------DLILYLLDLGTERLDDEL 331

Query: 123 ELIS--LMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGA 180
             I          K+  V  K D     D   RA+               V+ +S+ +G 
Sbjct: 332 TEIRELKAAHPAAKFLTVANKLDRAANADALIRAIADGTG--------TEVIGISALNGD 383

Query: 181 GIRSLRTVLSKIA 193
           GI +L+  +  + 
Sbjct: 384 GIDTLKQHMGDLV 396

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus} Length = 271

 Score = 45.8 bits (109), Expect = 2e-06
 Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 19/74 (25%)

Query: 24 IAFAGRSNVGKSSMLNALT--RQ----WGVVRTSDKPGLT--QTINFFKL-GTKLCLVDL 74
          +A  G  NVGK+++ NALT  RQ    W        PG+T  +     +    +  +VDL
Sbjct: 6  VALVGNPNVGKTTIFNALTGLRQHVGNW--------PGVTVEKKEGIMEYREKEFLVVDL 57

Query: 75 PG-YGF-AYAKEEV 86
          PG Y   A++ +E+
Sbjct: 58 PGIYSLTAHSIDEL 71

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A Length = 258

 Score = 45.4 bits (108), Expect = 3e-06
 Identities = 26/74 (35%), Positives = 36/74 (48%), Gaps = 19/74 (25%)

Query: 24 IAFAGRSNVGKSSMLNALT--RQ----WGVVRTSDKPGLT--QTINFFKL-GTKLCLVDL 74
          +A AG  NVGK+S+ NALT  +Q    W        PG+T  +    F   G  + L+DL
Sbjct: 8  VALAGCPNVGKTSLFNALTGTKQYVANW--------PGVTVEKKEGVFTYKGYTINLIDL 59

Query: 75 PG-YGF-AYAKEEV 86
          PG Y     + +E 
Sbjct: 60 PGTYSLGYSSIDEK 73

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} Length = 188

 Score = 44.9 bits (107), Expect = 3e-06
 Identities = 27/74 (36%), Positives = 36/74 (48%), Gaps = 19/74 (25%)

Query: 24 IAFAGRSNVGKSSMLNALT--RQ----WGVVRTSDKPGLT--QTINFFKL-GTKLCLVDL 74
          IA  G  NVGKS++ NALT        W        PG+T  +    F+  G K  +VDL
Sbjct: 10 IALIGNPNVGKSTIFNALTGENVYIGNW--------PGVTVEKKEGEFEYNGEKFKVVDL 61

Query: 75 PG-YGF-AYAKEEV 86
          PG Y   A + +E+
Sbjct: 62 PGVYSLTANSIDEI 75

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* Length = 165

 Score = 44.4 bits (106), Expect = 3e-06
 Identities = 26/70 (37%), Positives = 36/70 (51%), Gaps = 11/70 (15%)

Query: 24 IAFAGRSNVGKSSMLNALT--RQWGVVRTSDKPGLT--QTINFFKL-GTKLCLVDLPG-Y 77
          IA  G  NVGKS++ NALT           + PG+T  +    F+  G K  +VDLPG Y
Sbjct: 6  IALIGNPNVGKSTIFNALTGENV----YIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVY 61

Query: 78 GF-AYAKEEV 86
             A + +E+
Sbjct: 62 SLTANSIDEI 71

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A* Length = 274

 Score = 44.6 bits (106), Expect = 6e-06
 Identities = 24/86 (27%), Positives = 36/86 (41%), Gaps = 21/86 (24%)

Query: 24 IAFAGRSNVGKSSMLNALT--RQ----WGVVRTSDKPGLT--QTINFFKL-GTKLCLVDL 74
          I   G  N GK+++ N LT  RQ    W         G+T  +    F     ++ LVDL
Sbjct: 6  IGLIGNPNSGKTTLFNQLTGSRQRVGNW--------AGVTVERKEGQFSTTDHQVTLVDL 57

Query: 75 PG-YGF-AYAKEEVKDAWEELVKEYV 98
          PG Y     + +   D  E++   Y+
Sbjct: 58 PGTYSLTTISSQTSLD--EQIACHYI 81

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A* Length = 308

 Score = 44.0 bits (105), Expect = 1e-05
 Identities = 39/184 (21%), Positives = 70/184 (38%), Gaps = 34/184 (18%)

Query: 24  IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT-------INFFKLGTKLCLVDLPG 76
           +A  G+ NVGKS++LN L     V   S K     T       +       ++  +D PG
Sbjct: 13  VAIVGKPNVGKSTLLNNLLGT-KVSIISPKA---GTTRMRVLGVKNIPNEAQIIFLDTPG 68

Query: 77  -----YGFA---YAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELIS-L 127
                          E  K + EE           +  +  +ID   G +PRD E+    
Sbjct: 69  IYEPKKSDVLGHSMVEIAKQSLEE---------ADV--ILFMIDATEGWRPRDEEIYQNF 117

Query: 128 MERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRT 187
           ++       VV+ K D + P   A+  + + + +   +  +  ++ +S+  GA +  L  
Sbjct: 118 IKPLNKPVIVVINKIDKIGP---AKNVLPLIDEIHKKHPELTEIVPISALKGANLDELVK 174

Query: 188 VLSK 191
            + K
Sbjct: 175 TILK 178

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus} Length = 550

 Score = 43.6 bits (102), Expect = 2e-05
 Identities = 39/198 (19%), Positives = 62/198 (31%), Gaps = 49/198 (24%)

Query: 12  VSSSFPAPDL---PEIAFAGRSNVGKSSMLNALTRQ------WGVVRTSDK--------- 53
            S +    D    P +  AG+ + GK+S +  L  Q       G   T+D          
Sbjct: 53  HSPALEDADFDGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGET 112

Query: 54  ----PGLT-----------------QTINFFKLGT-------KLCLVDLPGYGFAYAKEE 85
               PG                     +N F            + ++D PG      +  
Sbjct: 113 EGTVPGNALVVDPEKPFRKLNPFGNTFLNRFMCAQLPNQVLESISIIDTPGILSGAKQRV 172

Query: 86  VKDAWEELVKEYVSTRVSLKRVCLLID-TKWGVKPRDHELISLMERSQTKYQVVLTKTDT 144
            +      V  + + RV L  + LL D  K  +     E I  +   + K +VVL K D 
Sbjct: 173 SRGYDFPAVLRWFAERVDL--IILLFDAHKLEISDEFSEAIGALRGHEDKIRVVLNKADM 230

Query: 145 VFPIDVARRAMQIEESLK 162
           V    + R    +  +L 
Sbjct: 231 VETQQLMRVYGALMWALG 248

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X Length = 301

 Score = 43.2 bits (103), Expect = 2e-05
 Identities = 41/185 (22%), Positives = 72/185 (38%), Gaps = 41/185 (22%)

Query: 24  IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT----INFFKLGTK------LCLVD 73
           IA  GR NVGKS++LN L  Q  +  TS K    QT    I    +G           VD
Sbjct: 11  IAIVGRPNVGKSTLLNKLLGQ-KISITSRKA---QTTRHRI----VGIHTEGAYQAIYVD 62

Query: 74  LPGYGFAYAKEE----VKDAWEELVKEYVSTRVSLKRVCLLID-TKWGVKPRDHELISLM 128
            PG      +       K A   +        V L  V  +++ T+W   P D  +++ +
Sbjct: 63  TPGLHMEEKRAINRLMNKAASSSI------GDVEL--VIFVVEGTRWT--PDDEMVLNKL 112

Query: 129 ERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLV--QPVMMVSSKSGAGIRSLR 186
              +    + + K D V           +   L+   S +    ++ +S+++G  + ++ 
Sbjct: 113 REGKAPVILAVNKVDNVQEKA------DLLPHLQFLASQMNFLDIVPISAETGLNVDTIA 166

Query: 187 TVLSK 191
            ++ K
Sbjct: 167 AIVRK 171

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila} Length = 256

 Score = 42.7 bits (101), Expect = 3e-05
 Identities = 20/78 (25%), Positives = 30/78 (38%), Gaps = 23/78 (29%)

Query: 24 IAFAGRSNVGKSSMLNALT--RQ----WGVVRTSDKPGLT--QTINFFKL-GTKLCLVDL 74
              G  N GK+++ NALT   Q    W        PG+T  +    F L    + + DL
Sbjct: 4  ALLIGNPNCGKTTLFNALTNANQRVGNW--------PGVTVEKKTGEFLLGEHLIEITDL 55

Query: 75 PG------YGFAYAKEEV 86
          PG           +++E 
Sbjct: 56 PGVYSLVANAEGISQDEQ 73

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} Length = 436

 Score = 42.5 bits (101), Expect = 4e-05
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)

Query: 17  PAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT 57
              ++ +    GR NVGKSS++NA+  +  V+  S+  G T
Sbjct: 171 YNEEVIQFCLIGRPNVGKSSLVNAMLGEERVI-VSNVAGTT 210

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} Length = 436

 Score = 42.1 bits (100), Expect = 5e-05
 Identities = 28/131 (21%), Positives = 56/131 (42%), Gaps = 17/131 (12%)

Query: 21  LPEIAFAGRSNVGKSSMLNALTRQWGVVRTS---DKPGLTQTINFFK---LGTKLCLVDL 74
            P +A  GR NVGKS++ N +  +    R S   D PG+T+   +     L     L+D 
Sbjct: 3   KPVVAIVGRPNVGKSTIFNRIAGE----RISIVEDTPGVTRDRIYSSAEWLNYDFNLIDT 58

Query: 75  PGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCL-LIDTKWGVKPRDHELISLMERSQT 133
            G       +   + +   +++     +    V + +++ + GV   D E+  ++ R++ 
Sbjct: 59  GGI------DIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKK 112

Query: 134 KYQVVLTKTDT 144
              + + K D 
Sbjct: 113 PVVLAVNKLDN 123

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 Length = 439

 Score = 42.5 bits (101), Expect = 4e-05
 Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 4/58 (6%)

Query: 19  PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQ---TINFFKLGTKLCLVD 73
            D  ++A  GR NVGKS++ NA+  +   +  S  PG T+       F  G K   VD
Sbjct: 178 TDAIKVAIVGRPNVGKSTLFNAILNKERAL-VSPIPGTTRDPVDDEVFIDGRKYVFVD 234

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 Length = 439

 Score = 41.7 bits (99), Expect = 6e-05
 Identities = 29/132 (21%), Positives = 54/132 (40%), Gaps = 16/132 (12%)

Query: 21  LPEIAFAGRSNVGKSSMLNALTRQWGVVRTS---DKPGLTQTINFFK---LGTKLCLVDL 74
           +  +   GR NVGKS++ N L ++    + +   D+ G+T+          G    LVD 
Sbjct: 1   MATVLIVGRPNVGKSTLFNKLVKK----KKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDT 56

Query: 75  PGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCL-LIDTKWGVKPRDHELISLMERSQT 133
            G       +  +D   + +KE     +    + L ++D K G+   D  L   + +S  
Sbjct: 57  CGV-----FDNPQDIISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKSTV 111

Query: 134 KYQVVLTKTDTV 145
              +V  K + +
Sbjct: 112 DTILVANKAENL 123

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* Length = 270

 Score = 41.9 bits (98), Expect = 5e-05
 Identities = 24/136 (17%), Positives = 45/136 (33%), Gaps = 20/136 (14%)

Query: 24  IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT---INFFKLGTKLCLVDLPGYGFA 80
           I   G+  VGKSS +N++  +  VV  S           ++  + G  L ++D PG    
Sbjct: 42  ILVMGKGGVGKSSTVNSIIGE-RVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGL--- 97

Query: 81  YAKEEVKDAWEELVKEYVSTRVSLKRV-CLLIDTKWGVKPRDHELISLMERSQTKYQ--- 136
                      ++    + + +  K +  LL   +      D+    + +     +    
Sbjct: 98  ----IEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGI 153

Query: 137 -----VVLTKTDTVFP 147
                V LT      P
Sbjct: 154 WNKAIVALTHAQFSPP 169

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1 Length = 301

 Score = 40.9 bits (97), Expect = 1e-04
 Identities = 42/189 (22%), Positives = 70/189 (37%), Gaps = 50/189 (26%)

Query: 24  IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT----INFFKLGTK------LCLVD 73
           +A  G+ NVGKS++LN L     V   S +P   QT    +     G        +  VD
Sbjct: 10  VAIVGKPNVGKSTLLNNLLGV-KVAPISPRP---QTTRKRL----RGILTEGRRQIVFVD 61

Query: 74  LPGY-------GFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELIS 126
            PG        G  +  +EV +A  +         V+   V  ++D +    P D  +  
Sbjct: 62  TPGLHKPMDALG-EFMDQEVYEALAD---------VNA--VVWVVDLRHPPTPEDELVAR 109

Query: 127 LMERSQTKYQVVL--TKTDTVFPIDVARRAMQIEESLKANNSLVQ--PVMMVSSKSGAGI 182
            ++    K  ++L   K D              EE++KA + L+      M+S+     +
Sbjct: 110 ALKPLVGKVPILLVGNKLDAA---------KYPEEAMKAYHELLPEAEPRMLSALDERQV 160

Query: 183 RSLRTVLSK 191
             L+  L  
Sbjct: 161 AELKADLLA 169

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} Length = 357

 Score = 41.0 bits (96), Expect = 1e-04
 Identities = 38/183 (20%), Positives = 72/183 (39%), Gaps = 23/183 (12%)

Query: 19  PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLP 75
            ++P +  AG  NVGKS++L ALT        +  P  T+ IN   F     +  ++D P
Sbjct: 165 LEIPTVVIAGHPNVGKSTLLKALTT--AKPEIASYPFTTRGINVGQFEDGYFRYQIIDTP 222

Query: 76  GYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCL-LIDT----KWGVKPRDHELISLMER 130
           G        E      E+ K+ +     L  + + + D      + ++ + H    +   
Sbjct: 223 GL-LDRPISERN----EIEKQAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGE 277

Query: 131 SQTKYQ-VVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVL 189
            +     VV+ K D     ++ R    +E+ +K         + +S+  G GI  ++  +
Sbjct: 278 FKDLPFLVVINKIDVADEENIKR----LEKFVKEKG---LNPIKISALKGTGIDLVKEEI 330

Query: 190 SKI 192
            K 
Sbjct: 331 IKT 333

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	198
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	100.0
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	100.0
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	100.0
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	99.95
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	99.94
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	99.94
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	99.94
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	99.94
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	99.93
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	99.93
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.93
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.93
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	99.93
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	99.92
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	99.92
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	99.92
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	99.92
2fh5_B	214	SR-beta, signal recognition particle receptor beta	99.92
1wb1_A	482	Translation elongation factor SELB; selenocysteine	99.92
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	99.92
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	99.92
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.92
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	99.92
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	99.92
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	99.92
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	99.92
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	99.92
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	99.92
2wji_A	165	Ferrous iron transport protein B homolog; membrane	99.92
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.92
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	99.92
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	99.92
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	99.92
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	99.92
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	99.92
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	99.91
3llu_A	196	RAS-related GTP-binding protein C; structural geno	99.91
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	99.91
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	99.91
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	99.91
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	99.91
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	99.91
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	99.91
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	99.91
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	99.91
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.91
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	99.91
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	99.91
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	99.91
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	99.91
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	99.91
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	99.91
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	99.91
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	99.91
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	99.91
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	99.91
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	99.91
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	99.91
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	99.91
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	99.9
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.9
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	99.9
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	99.9
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	99.9
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	99.9
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	99.9
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	99.9
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	99.9
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	99.9
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	99.9
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	99.9
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	99.9
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	99.9
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	99.9
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	99.9
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	99.9
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	99.9
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	99.9
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	99.9
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	99.9
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	99.9
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	99.9
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	99.9
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	99.9
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	99.9
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	99.9
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	99.9
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	99.9
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	99.9
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.9
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	99.9
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	99.9
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	99.9
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	99.9
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	99.9
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	99.9
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	99.9
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	99.9
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	99.89
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	99.89
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	99.89
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	99.89
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	99.89
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	99.89
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	99.89
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	99.89
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	99.89
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	99.89
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	99.89
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	99.89
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	99.89
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	99.89
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	99.89
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	99.89
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	99.89
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	99.89
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	99.89
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	99.89
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	99.89
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	99.89
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	99.89
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	99.89
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	99.89
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	99.88
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	99.88
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	99.88
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	99.88
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	99.88
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	99.88
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	99.88
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	99.88
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	99.88
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	99.88
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	99.88
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	99.88
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	99.88
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	99.88
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	99.87
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	99.87
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	99.87
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	99.87
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	99.87
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	99.87
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.78
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	99.87
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	99.87
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	99.87
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	99.86
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	99.86
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	99.86
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	99.86
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	99.86
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	99.86
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	99.86
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.86
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	99.86
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	99.86
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	99.85
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	99.85
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	99.85
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	99.85
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	99.84
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	99.84
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	99.84
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	99.83
1nrj_B	218	SR-beta, signal recognition particle receptor beta	99.83
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	99.83
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	99.83
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	99.82
1wxq_A	397	GTP-binding protein; structural genomics, riken st	99.81
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	99.81
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	99.8
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	99.8
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	99.8
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	99.8
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	99.79
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	99.79
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	99.79
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	99.79
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	99.78
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	99.78
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	99.78
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	99.78
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	99.78
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	99.77
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	99.77
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	99.77
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	99.77
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	99.76
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	99.75
2ged_A	193	SR-beta, signal recognition particle receptor beta	99.75
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	99.74
3j25_A	638	Tetracycline resistance protein TETM; antibiotic r	99.73
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	99.73
4fn5_A	709	EF-G 1, elongation factor G 1; translation, transl	99.7
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	99.69
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	99.69
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	99.68
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	99.68
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	99.65
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	99.65
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	99.64
2hf9_A	226	Probable hydrogenase nickel incorporation protein	99.58
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	99.57
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	99.49
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	99.47
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	99.42
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	99.42
3ohm_A	327	Guanine nucleotide-binding protein G(Q) subunit A;	99.3
4fid_A	340	G protein alpha subunit; RAS-like domain, all-heli	99.27
3l82_B	227	F-box only protein 4; TRFH domain, helix, GTPase d	99.24
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	99.19
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	99.18
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	99.17
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	99.08
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	99.08
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	99.05
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	99.05
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	99.04
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	99.03
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	99.01
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	99.0
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	98.97
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	98.97
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	98.97
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	98.87
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	98.83
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.82
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	98.78
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	98.75
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	98.63
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	98.52
2xxa_A	433	Signal recognition particle protein; protein trans	98.4
3q5d_A	447	Atlastin-1; G protein, GTPase, GDP/GTP binding, hy	98.35
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	98.29
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	98.26
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	98.25
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	98.2
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	98.18
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	98.17
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	98.15
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	98.07
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	98.05
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	98.04
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	98.03
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	98.0
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	97.96
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	97.95
4ido_A	457	Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HE	97.74
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	97.72
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	97.71
4dzz_A	206	Plasmid partitioning protein PARF; deviant walker	97.71
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	97.66
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	97.65
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	97.56
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	97.51
3ug7_A	349	Arsenical pump-driving ATPase; tail-anchored, memb	97.5
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	97.5
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	97.5
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	97.5
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	97.49
3cwq_A	209	Para family chromosome partitioning protein; alpha	97.48
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	97.48
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	97.46
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	97.45
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	97.44
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	97.44
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	97.43
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	97.43
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	97.42
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	97.4
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	97.38
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	97.37
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	97.36
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	97.36
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	97.36
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	97.35
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	97.34
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	97.34
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	97.33
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	97.33
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	97.33
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	97.33
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	97.33
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	97.33
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	97.33
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	97.33
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	97.33
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	97.32
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	97.32
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	97.32
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	97.31
1b0u_A	262	Histidine permease; ABC transporter, transport pro	97.31
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	97.3
2eyu_A	261	Twitching motility protein PILT; pilus retraction	97.3
1sgw_A	214	Putative ABC transporter; structural genomics, P p	97.3
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	97.3
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	97.3
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	97.29
1g6h_A	257	High-affinity branched-chain amino acid transport	97.29
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	97.27
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	97.27
1ji0_A	240	ABC transporter; ATP binding protein, structural g	97.27
2ghi_A	260	Transport protein; multidrug resistance protein, M	97.26
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	97.26
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	97.26
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	97.25
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	97.25
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	97.25
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	97.25
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	97.24
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	97.24
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	97.24
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	97.23
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	97.22
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	97.22
1sxj_A	516	Activator 1 95 kDa subunit; clamp loader, processi	97.22
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	97.21
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	97.21
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	97.2
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	97.2
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	97.19
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	97.19
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	97.19
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	97.19
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	97.19
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	97.18
3end_A	307	Light-independent protochlorophyllide reductase ir	97.18
1via_A	175	Shikimate kinase; structural genomics, transferase	97.17
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	97.17
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	97.17
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	97.17
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	97.17
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	97.16
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	97.15
3te6_A	318	Regulatory protein SIR3; heterochromatin, gene sil	97.15
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	97.12
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	97.11
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	97.11
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	97.11
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	97.1
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	97.09
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	97.09
3k9g_A	267	PF-32 protein; ssgcid, SBRI, decode biostructures,	97.09
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	97.09
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	97.09
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	97.08
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	97.08
4a74_A	231	DNA repair and recombination protein RADA; hydrola	97.07
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	97.07
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	97.07
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	97.06
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	97.05
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	97.05
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	97.05
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	97.05
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	97.04
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	97.04
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	97.04
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	97.04
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	97.04
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	97.03
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	97.03
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	97.03
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	97.03
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	97.02
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	97.01
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	97.01
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	97.01
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	97.01
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	97.01
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	97.0
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	97.0
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	97.0
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	96.99
2ewv_A	372	Twitching motility protein PILT; pilus retraction	96.99
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	96.99
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	96.98
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	96.98
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	96.98
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	96.98
4b4t_H	467	26S protease regulatory subunit 7 homolog; hydrola	96.97
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	96.95
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	96.95
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	96.95
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	96.95
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	96.94
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	96.94
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	96.93
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	96.93
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	96.92
2vli_A	183	Antibiotic resistance protein; transferase, tunica	96.92
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	96.91
1p9r_A	418	General secretion pathway protein E; bacterial typ	96.91
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	96.91
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	96.89
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	96.89
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	96.89
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	96.89
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	96.88
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	96.88
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	96.87
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	96.85
2b8t_A	223	Thymidine kinase; deoxyribonucleoside kinase, zinc	96.85
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	96.84
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	96.84
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	96.84
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	96.84
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	96.83
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	96.79
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	96.79
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	96.79
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	96.78
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	96.78
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	96.78
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	96.77
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	96.77
3kta_A	182	Chromosome segregation protein SMC; structural mai	96.77
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	96.76
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	96.75
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	96.75
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	96.74
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	96.74
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	96.74
2og2_A	359	Putative signal recognition particle receptor; nuc	96.74
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	96.74
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	96.73
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	96.72
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	96.69
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	96.68
3q9l_A	260	Septum site-determining protein MIND; ATPase, bact	96.68
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	96.65
3bos_A	242	Putative DNA replication factor; P-loop containing	96.62
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	96.61
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	96.6
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	96.59
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	96.58
3pvs_A	447	Replication-associated recombination protein A; ma	96.58
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	96.58
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	96.58
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	96.58
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	96.57
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	96.57
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	96.55
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	96.54
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	96.54
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	96.54
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	96.54
2cvh_A	220	DNA repair and recombination protein RADB; filamen	96.53
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	96.53
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	96.52
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	96.51
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	96.51
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	96.51
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	96.51
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	96.49
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	96.49
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	96.48
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	96.45
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	96.44
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	96.43
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	96.43
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	96.41
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	96.41
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	96.4
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	96.39
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	96.38
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	96.37
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	96.37
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	96.35
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	96.35
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	96.34
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	96.33
2chg_A	226	Replication factor C small subunit; DNA-binding pr	96.32
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	96.32
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	96.31
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	96.3
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	96.29
3co5_A	143	Putative two-component system transcriptional RES	96.29
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	96.26
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	96.22
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	96.22
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	96.21
1tue_A	212	Replication protein E1; helicase, replication, E1E	96.21
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	96.2
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	96.2
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	96.2
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	96.19
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	96.18
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	96.17
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	96.16
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	96.13
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	96.13
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	96.13
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	96.11
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	96.09
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	96.06
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	96.06
1qhl_A	227	Protein (cell division protein MUKB); SMC, chromos	96.04
2qgz_A	308	Helicase loader, putative primosome component; str	96.02

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=100.00  E-value=4.4e-32  Score=193.71  Aligned_cols=190  Identities=33%  Similarity=0.546  Sum_probs=159.8

Q ss_pred             CccceeeccCCcCCCCCCCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEeCCceEEEeCCCCcccc
Q 029158            2 NKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAY   81 (198)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~iiDtpG~~~~~   81 (198)
                      +..+|+.+.......+....++|+++|.+|+|||||+++|++. ......+.+++|........+.++.+|||||++...
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~-~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~   82 (195)
T 3pqc_A            4 RDVELVKVARTPGDYPPPLKGEVAFVGRSNVGKSSLLNALFNR-KIAFVSKTPGKTRSINFYLVNSKYYFVDLPGYGYAK   82 (195)
T ss_dssp             CCEEEEEEECSTTCCCCCTTCEEEEEEBTTSSHHHHHHHHHTS-CCSCCCSSCCCCCCEEEEEETTTEEEEECCCBSSSC
T ss_pred             hHHHHHHHhcChhhCCCCCCeEEEEECCCCCCHHHHHHHHHcC-ccccccCCCCCccCeEEEEECCcEEEEECCCCcccc
Confidence            5678888889999899999999999999999999999999998 456667777788887777778899999999987665


Q ss_pred             chhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHH
Q 029158           82 AKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESL  161 (198)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~  161 (198)
                      ......+.+..+...++.....+|++++|+|++.+....+..+++++...+.|+++|+||+|+....+.....+.+++..
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~  162 (195)
T 3pqc_A           83 VSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSLNIPFTIVLTKMDKVKMSERAKKLEEHRKVF  162 (195)
T ss_dssp             CCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCGGGHHHHHHHHHHHH
T ss_pred             CChhhHHHHHHHHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEEChhcCChHHHHHHHHHHHHHH
Confidence            55555677788888888888888999999999887677777778888888999999999999998777766666666665


Q ss_pred             HhccCCCCCcEEeccCCCCChHHHHHHHHHhhc
Q 029158          162 KANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR  194 (198)
Q Consensus       162 ~~~~~~~~~v~~~Sa~~~~gi~~l~~~i~~~~~  194 (198)
                      ...  ...+++++||++|+|+++++++|.+.+.
T Consensus       163 ~~~--~~~~~~~~Sa~~~~gv~~l~~~l~~~l~  193 (195)
T 3pqc_A          163 SKY--GEYTIIPTSSVTGEGISELLDLISTLLK  193 (195)
T ss_dssp             HSS--CCSCEEECCTTTCTTHHHHHHHHHHHHC
T ss_pred             hhc--CCCceEEEecCCCCCHHHHHHHHHHHhh
Confidence            532  2478999999999999999999998765

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=100.00  E-value=1.8e-32  Score=195.99  Aligned_cols=191  Identities=32%  Similarity=0.530  Sum_probs=148.5

Q ss_pred             CccceeeccCCcCCCCCCCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEeCCceEEEeCCCCcccc
Q 029158            2 NKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAY   81 (198)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~iiDtpG~~~~~   81 (198)
                      +.++|+.+.....+.+....++|+++|.+|+|||||+++|++........+.+++|........+.++.+|||||+++..
T Consensus         4 ~~~~~~~s~~~~~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~Dt~G~~~~~   83 (195)
T 1svi_A            4 TKSEIVISAVKPEQYPEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIINDELHFVDVPGYGFAK   83 (195)
T ss_dssp             CCEEEEEEESSGGGSCCSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETTTEEEEECCCBCCCS
T ss_pred             eeeEEEEecCChhhCCCCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECCcEEEEECCCCCccc
Confidence            46789999999998898899999999999999999999999874355566777778777776667899999999987765


Q ss_pred             chhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHH
Q 029158           82 AKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESL  161 (198)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~  161 (198)
                      ......+.+..+...++.....+|++++|+|++++....+.++++.+...+.|+++|+||+|+....+.....+.+++.+
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~  163 (195)
T 1svi_A           84 VSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKADKIPKGKWDKHAKVVRQTL  163 (195)
T ss_dssp             SCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCGGGHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCChHHHHHHHHHHHHHH
Confidence            55555667777788888887777999999999987777667777888777899999999999998776666556666554


Q ss_pred             HhccCCCCCcEEeccCCCCChHHHHHHHHHhhc
Q 029158          162 KANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR  194 (198)
Q Consensus       162 ~~~~~~~~~v~~~Sa~~~~gi~~l~~~i~~~~~  194 (198)
                      ..  ....+++++||++|+|+++++++|.+.++
T Consensus       164 ~~--~~~~~~~~~Sa~~~~gv~~l~~~l~~~l~  194 (195)
T 1svi_A          164 NI--DPEDELILFSSETKKGKDEAWGAIKKMIN  194 (195)
T ss_dssp             TC--CTTSEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred             cc--cCCCceEEEEccCCCCHHHHHHHHHHHhc
Confidence            42  23578999999999999999999988764

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=100.00  E-value=8.8e-33  Score=201.67  Aligned_cols=193  Identities=31%  Similarity=0.478  Sum_probs=158.6

Q ss_pred             ccceeeccCCcCCCCCCCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEeC----CceEEEeCCCCc
Q 029158            3 KLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLG----TKLCLVDLPGYG   78 (198)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~----~~~~iiDtpG~~   78 (198)
                      +.+|+.+.....+.++...++|+++|.+|+|||||+++|++..........+++|.........    ..+.+|||||++
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~   90 (223)
T 4dhe_A           11 QARFFTTVNHLRDLPPTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYG   90 (223)
T ss_dssp             TCEEEEEECSGGGSCCCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCC
T ss_pred             hhhHHhcccchhhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCC
Confidence            3567888888888888899999999999999999999999984356777888888877655554    789999999987


Q ss_pred             cccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHH
Q 029158           79 FAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIE  158 (198)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~  158 (198)
                      +........+.+..+...|+.....+|++++|+|+++++...+..++..+...+.|+++|+||+|+....+.......+.
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~  170 (223)
T 4dhe_A           91 YAEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAPTGKPIHSLLTKCDKLTRQESINALRATQ  170 (223)
T ss_dssp             SSCCCSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGGGCCCEEEEEECGGGSCHHHHHHHHHHHH
T ss_pred             cccCChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEeccccCChhhHHHHHHHHH
Confidence            76545555677788888899888889999999999988777778888888888899999999999998777666666666


Q ss_pred             HHHHhc----cCCCCCcEEeccCCCCChHHHHHHHHHhhcc
Q 029158          159 ESLKAN----NSLVQPVMMVSSKSGAGIRSLRTVLSKIARF  195 (198)
Q Consensus       159 ~~~~~~----~~~~~~v~~~Sa~~~~gi~~l~~~i~~~~~~  195 (198)
                      +.+...    .....+++++||++|+|+++++++|.+.+..
T Consensus       171 ~~l~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~  211 (223)
T 4dhe_A          171 KSLDAYRDAGYAGKLTVQLFSALKRTGLDDAHALIESWLRP  211 (223)
T ss_dssp             HHHHHHHHHTCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC-
T ss_pred             HHHHhhhhcccCCCCeEEEeecCCCcCHHHHHHHHHHhcCc
Confidence            555442    1235789999999999999999999988754

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=99.95  E-value=3.5e-27  Score=179.84  Aligned_cols=171  Identities=22%  Similarity=0.271  Sum_probs=126.2

Q ss_pred             CCCCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE---EEEe-CCceEEEeCCCCccccchhHHHHHHHH
Q 029158           17 PAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKL-GTKLCLVDLPGYGFAYAKEEVKDAWEE   92 (198)
Q Consensus        17 ~~~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~---~~~~-~~~~~iiDtpG~~~~~~~~~~~~~~~~   92 (198)
                      +++....|+++|.+|+|||||+|+|++. .+...++.+++|+...   .... +.++.+|||||+.+........+.+..
T Consensus         6 ~~~~~g~v~ivG~~nvGKSTLin~l~g~-~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~   84 (308)
T 3iev_A            6 HHMKVGYVAIVGKPNVGKSTLLNNLLGT-KVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVE   84 (308)
T ss_dssp             -CCEEEEEEEECSTTSSHHHHHHHHHTS-CCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHH
T ss_pred             CCCCCCEEEEECCCCCcHHHHHHHHhCC-CccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHH
Confidence            4455668999999999999999999998 5566677777876533   2223 678999999998764322333333333


Q ss_pred             HHHHHHhcccccceEEEEEeCCCCCCcCcHHH-HHHHHhhCCcEEEEEeccCCC-CcHHHHHHHHHHHHHHHhccCCCCC
Q 029158           93 LVKEYVSTRVSLKRVCLLIDTKWGVKPRDHEL-ISLMERSQTKYQVVLTKTDTV-FPIDVARRAMQIEESLKANNSLVQP  170 (198)
Q Consensus        93 ~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~-~~~~~~~~~p~iiv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~~  170 (198)
                      ....++.   .+|++++|+|++++....+... ++.+...+.|+++|+||+|+. ...........+.+.+    ....+
T Consensus        85 ~~~~~l~---~aD~il~VvD~~~~~~~~~~~~~~~~l~~~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~----~~~~~  157 (308)
T 3iev_A           85 IAKQSLE---EADVILFMIDATEGWRPRDEEIYQNFIKPLNKPVIVVINKIDKIGPAKNVLPLIDEIHKKH----PELTE  157 (308)
T ss_dssp             HHHHHHH---HCSEEEEEEETTTBSCHHHHHHHHHHTGGGCCCEEEEEECGGGSSSGGGGHHHHHHHHHHC----TTCCC
T ss_pred             HHHHHhh---cCCEEEEEEeCCCCCCchhHHHHHHHHHhcCCCEEEEEECccCCCCHHHHHHHHHHHHHhc----cCCCe
Confidence            3334443   4999999999998777777766 777777789999999999998 5555544444444432    23478


Q ss_pred             cEEeccCCCCChHHHHHHHHHhhcc
Q 029158          171 VMMVSSKSGAGIRSLRTVLSKIARF  195 (198)
Q Consensus       171 v~~~Sa~~~~gi~~l~~~i~~~~~~  195 (198)
                      ++++||++|.|+++++++|.+.+..
T Consensus       158 i~~vSA~~g~gv~~L~~~l~~~l~~  182 (308)
T 3iev_A          158 IVPISALKGANLDELVKTILKYLPE  182 (308)
T ss_dssp             EEECBTTTTBSHHHHHHHHHHHSCB
T ss_pred             EEEEeCCCCCCHHHHHHHHHHhCcc
Confidence            9999999999999999999987753

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=99.94  E-value=4e-26  Score=173.25  Aligned_cols=162  Identities=19%  Similarity=0.197  Sum_probs=117.2

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE---EEEeCCceEEEeCCCCccccchhHHHHHHHHHHHH
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE   96 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~---~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~   96 (198)
                      ...+|+++|.+|+|||||+|+|++. .+...++.++||+...   +...+.++.+|||||+.+..  ....+.   +...
T Consensus         6 ~~g~V~ivG~~nvGKSTLln~l~g~-~~~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~--~~l~~~---~~~~   79 (301)
T 1wf3_A            6 YSGFVAIVGKPNVGKSTLLNNLLGV-KVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPM--DALGEF---MDQE   79 (301)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHTS-CCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCC--SHHHHH---HHHH
T ss_pred             cCCEEEEECCCCCCHHHHHHHHhCC-ceeeecCCCCceeEEEEEEEEeCCcEEEEecCccccchh--hHHHHH---HHHH
Confidence            3457999999999999999999998 4555566777776532   22336789999999986532  122222   2333


Q ss_pred             HHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhh--CCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEe
Q 029158           97 YVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERS--QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMV  174 (198)
Q Consensus        97 ~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~--~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  174 (198)
                      .......+|++++|+|+++++...+.++++.+...  +.|+++|+||+|+......  ..+.+++.     ....+++++
T Consensus        80 ~~~~l~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~~~p~ilV~NK~Dl~~~~~~--~~~~~~~~-----~~~~~~~~i  152 (301)
T 1wf3_A           80 VYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAAKYPEE--AMKAYHEL-----LPEAEPRML  152 (301)
T ss_dssp             HHHHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEEEEEECGGGCSSHHH--HHHHHHHT-----STTSEEEEC
T ss_pred             HHHHHhcCCEEEEEEECCCCCChHHHHHHHHHHhhcCCCCEEEEEECcccCCchHH--HHHHHHHh-----cCcCcEEEE
Confidence            33444569999999999987776666667788776  8999999999999875541  11222221     223578999


Q ss_pred             ccCCCCChHHHHHHHHHhhc
Q 029158          175 SSKSGAGIRSLRTVLSKIAR  194 (198)
Q Consensus       175 Sa~~~~gi~~l~~~i~~~~~  194 (198)
                      ||++|.|+++++++|.+.+.
T Consensus       153 SA~~g~gv~~l~~~l~~~l~  172 (301)
T 1wf3_A          153 SALDERQVAELKADLLALMP  172 (301)
T ss_dssp             CTTCHHHHHHHHHHHHTTCC
T ss_pred             eCCCCCCHHHHHHHHHHhcc
Confidence            99999999999999988664

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=99.94  E-value=3.7e-26  Score=158.12  Aligned_cols=156  Identities=21%  Similarity=0.218  Sum_probs=104.1

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE---EEEeCCceEEEeCCCCccccchhHHHHHHHHHHHHH
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY   97 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~---~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~   97 (198)
                      .++|+++|.+|+|||||++++++. ........++++.+..   +...+..+.+|||||......   ..   ......+
T Consensus         1 ~~ki~v~G~~~~GKSsli~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~---~~---~~~~~~~   73 (161)
T 2dyk_A            1 MHKVVIVGRPNVGKSSLFNRLLKK-RSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGDK---WE---KKIQEKV   73 (161)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHC-CC-----------CCEEEEEEETTEEEEEEECGGGCSSSS---CC---HHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC-CeeeccCCCCceecceEEEEEeCCceEEEEECCCCCCccc---hH---HHHHHHH
Confidence            368999999999999999999987 3334455566655433   222356899999999754211   01   1112222


Q ss_pred             HhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCC-CcEEecc
Q 029158           98 VSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQ-PVMMVSS  176 (198)
Q Consensus        98 ~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~Sa  176 (198)
                      ......+|++++++|++++....+.++.+.+...+.|+++|+||+|+....+      ..++. .   ..+. +++++||
T Consensus        74 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~------~~~~~-~---~~~~~~~~~~Sa  143 (161)
T 2dyk_A           74 DRALEDAEVVLFAVDGRAELTQADYEVAEYLRRKGKPVILVATKVDDPKHEL------YLGPL-Y---GLGFGDPIPTSS  143 (161)
T ss_dssp             HHHTTTCSEEEEEEESSSCCCHHHHHHHHHHHHHTCCEEEEEECCCSGGGGG------GCGGG-G---GGSSCSCEECBT
T ss_pred             HHHHHhCCEEEEEEECCCcccHhHHHHHHHHHhcCCCEEEEEECcccccchH------hHHHH-H---hCCCCCeEEEec
Confidence            2333458999999999987666666677777777899999999999986521      11111 1   1134 7999999


Q ss_pred             CCCCChHHHHHHHHHhh
Q 029158          177 KSGAGIRSLRTVLSKIA  193 (198)
Q Consensus       177 ~~~~gi~~l~~~i~~~~  193 (198)
                      ++|.|+++++++|.+.+
T Consensus       144 ~~~~gv~~l~~~l~~~l  160 (161)
T 2dyk_A          144 EHARGLEELLEAIWERL  160 (161)
T ss_dssp             TTTBSHHHHHHHHHHHC
T ss_pred             ccCCChHHHHHHHHHhC
Confidence            99999999999998865

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=99.94  E-value=7e-26  Score=165.79  Aligned_cols=177  Identities=16%  Similarity=0.149  Sum_probs=108.9

Q ss_pred             CcCCCCC--CCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEE---eCCceEEEeCCCCccccchhHH
Q 029158           12 VSSSFPA--PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEV   86 (198)
Q Consensus        12 ~~~~~~~--~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~iiDtpG~~~~~~~~~~   86 (198)
                      ....+|.  ...++|+++|.+|+|||||+++|++.. .. ..+.+++|.......   .+..+.+|||||+.+.......
T Consensus        18 ~~~~~P~~~~~~~kI~vvG~~~vGKSsLin~l~~~~-~~-~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~   95 (228)
T 2qu8_A           18 YFQGLPSINPHKKTIILSGAPNVGKSSFMNIVSRAN-VD-VQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAFENRN   95 (228)
T ss_dssp             ----CCSCCTTSEEEEEECSTTSSHHHHHHHHTTTC-EE-EECC-----CEEEEEEEETTEEEEEEECTTTTTSCGGGCC
T ss_pred             eeccCCCCCCCCCEEEEECCCCCCHHHHHHHHhCCC-Cc-cCCCCCcceeeeeeeeecCCCeEEEEECCCCcCcccchhh
Confidence            3444554  567899999999999999999999984 32 455666676655433   2468999999998542111110


Q ss_pred             HHHHHHHHHHHHhcccccceEEEEEeCCCCCCcC---cHHHHHHHHhh--CCcEEEEEeccCCCCcHHHHHHH-HHHHHH
Q 029158           87 KDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPR---DHELISLMERS--QTKYQVVLTKTDTVFPIDVARRA-MQIEES  160 (198)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~---~~~~~~~~~~~--~~p~iiv~nK~Dl~~~~~~~~~~-~~~~~~  160 (198)
                      ...+. .+..++   ..+|++++|+|+++.....   ...++..+...  +.|+++|+||+|+.......... ..+++.
T Consensus        96 ~~~~~-~~~~~~---~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~  171 (228)
T 2qu8_A           96 TIEMT-TITALA---HINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQI  171 (228)
T ss_dssp             HHHHH-HHHHHH---TSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC--CCCHHHHHHHHHH
T ss_pred             hHHHH-HHHHhh---ccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCchhhHHHHHHHHHHH
Confidence            00011 112222   3478999999998754432   23455556554  79999999999998654322211 122222


Q ss_pred             HHhccCCCCCcEEeccCCCCChHHHHHHHHHhhcc
Q 029158          161 LKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIARF  195 (198)
Q Consensus       161 ~~~~~~~~~~v~~~Sa~~~~gi~~l~~~i~~~~~~  195 (198)
                      .. ......+++++||++|+|+++++++|.+.+..
T Consensus       172 ~~-~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~  205 (228)
T 2qu8_A          172 LD-NVKNPIKFSSFSTLTGVGVEQAKITACELLKN  205 (228)
T ss_dssp             HH-HCCSCEEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             HH-hcCCCceEEEEecccCCCHHHHHHHHHHHHHH
Confidence            22 11122689999999999999999999887653

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=99.94  E-value=1.2e-26  Score=172.47  Aligned_cols=160  Identities=22%  Similarity=0.212  Sum_probs=113.3

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEE---EEeCCceEEEeCCCCccccchhHHHHHHHHHHHHHH
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF---FKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV   98 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~---~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~   98 (198)
                      ++|+++|.+|+|||||+|+|++..  ...++++++|.+...   ...+..+.+|||||+.............+.+.+.|+
T Consensus         2 ~kI~lvG~~n~GKSTL~n~L~g~~--~~v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~   79 (256)
T 3iby_A            2 THALLIGNPNCGKTTLFNALTNAN--QRVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSV   79 (256)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTS--EEEEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCC--CCccCCCCceEEEEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence            689999999999999999999984  567788888866442   223568999999998553221000011133444444


Q ss_pred             hcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEeccCC
Q 029158           99 STRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKS  178 (198)
Q Consensus        99 ~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~  178 (198)
                      .. ..+|++++|+|+++  ......+..++.+.+.|+++|+||+|+............+.+.+      ++|++++||++
T Consensus        80 ~~-~~~d~vi~VvDas~--~~~~~~l~~~l~~~~~pvilv~NK~Dl~~~~~~~~~~~~l~~~l------g~~vi~~SA~~  150 (256)
T 3iby_A           80 ID-LEYDCIINVIDACH--LERHLYLTSQLFELGKPVVVALNMMDIAEHRGISIDTEKLESLL------GCSVIPIQAHK  150 (256)
T ss_dssp             HH-SCCSEEEEEEEGGG--HHHHHHHHHHHTTSCSCEEEEEECHHHHHHTTCEECHHHHHHHH------CSCEEECBGGG
T ss_pred             hh-CCCCEEEEEeeCCC--chhHHHHHHHHHHcCCCEEEEEEChhcCCcCCcHHHHHHHHHHc------CCCEEEEECCC
Confidence            22 35899999999986  34445666777777899999999999865432222223333332      47999999999


Q ss_pred             CCChHHHHHHHHHh
Q 029158          179 GAGIRSLRTVLSKI  192 (198)
Q Consensus       179 ~~gi~~l~~~i~~~  192 (198)
                      |.|+++++++|.+.
T Consensus       151 g~gi~el~~~i~~~  164 (256)
T 3iby_A          151 NIGIPALQQSLLHC  164 (256)
T ss_dssp             TBSHHHHHHHHHTC
T ss_pred             CCCHHHHHHHHHhh
Confidence            99999999999875

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=99.93  E-value=1.8e-24  Score=153.51  Aligned_cols=170  Identities=25%  Similarity=0.400  Sum_probs=113.5

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEeCCceEEEeCCCCccccchh-HHHHHHHHHHHHHHhc
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKE-EVKDAWEELVKEYVST  100 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~iiDtpG~~~~~~~~-~~~~~~~~~~~~~~~~  100 (198)
                      ++|+++|.+|+|||||+++|++..  ......+++|......... .+.+|||||+......+ ...+.+......++..
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~--~~~~~~~~~t~~~~~~~~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~   78 (190)
T 2cxx_A            2 ATIIFAGRSNVGKSTLIYRLTGKK--VRRGKRPGVTRKIIEIEWK-NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIED   78 (190)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHSCC--CSSSSSTTCTTSCEEEEET-TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhCcC--CccCCCCCccceeEEEecC-CEEEEECCCccccccCCHHHHHHHHHHHHHHHHh
Confidence            689999999999999999999874  3334455555544433334 79999999975432211 1244556666677766


Q ss_pred             -ccccceEEEEEeCCCC-----------CCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhcc-CC
Q 029158          101 -RVSLKRVCLLIDTKWG-----------VKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANN-SL  167 (198)
Q Consensus       101 -~~~~d~vi~v~d~~~~-----------~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~  167 (198)
                       ...++++++++|+.+.           ....+.+.+..+...+.|+++|+||+|+....  .+..+.+.+.+.... ..
T Consensus        79 ~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~  156 (190)
T 2cxx_A           79 NAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV--QEVINFLAEKFEVPLSEI  156 (190)
T ss_dssp             HGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH--HHHHHHHHHHHTCCGGGH
T ss_pred             hhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH--HHHHHHHHHHhhhhhhcc
Confidence             6778899999998641           11112334455555689999999999998765  222233333322100 00


Q ss_pred             CCCcEEeccCCCCChHHHHHHHHHhhccc
Q 029158          168 VQPVMMVSSKSGAGIRSLRTVLSKIARFA  196 (198)
Q Consensus       168 ~~~v~~~Sa~~~~gi~~l~~~i~~~~~~~  196 (198)
                      ..+++++||++|+|+++++++|.+.+...
T Consensus       157 ~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~  185 (190)
T 2cxx_A          157 DKVFIPISAKFGDNIERLKNRIFEVIRER  185 (190)
T ss_dssp             HHHEEECCTTTCTTHHHHHHHHHHHHHHC
T ss_pred             CCcEEEEecCCCCCHHHHHHHHHHhcchh
Confidence            12479999999999999999999877543

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=99.93  E-value=3.2e-26  Score=171.90  Aligned_cols=163  Identities=21%  Similarity=0.236  Sum_probs=114.5

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE---EEEeCCceEEEeCCCCccccchhHHHHHHHHHHHHH
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY   97 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~---~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~   97 (198)
                      .++|+++|.+|+|||||+|+|++..  ...++++++|.+..   +...+..+.+|||||+.+...........+.+.+.|
T Consensus         3 ~~~I~lvG~~n~GKSTLin~l~g~~--~~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~   80 (274)
T 3i8s_A            3 KLTIGLIGNPNSGKTTLFNQLTGSR--QRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHY   80 (274)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHTTC--EEEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHhCCC--cccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHHHH
Confidence            5789999999999999999999984  56778888887654   223467899999999755321100000112223333


Q ss_pred             HhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEeccC
Q 029158           98 VSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSK  177 (198)
Q Consensus        98 ~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~  177 (198)
                      + ....+|++++|+|+++  .....++..++.+.+.|+++|+||+|+..........+.+.+.+      +++++++||+
T Consensus        81 ~-~~~~~d~ii~VvD~~~--~~~~~~~~~~l~~~~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~l------g~~~i~~SA~  151 (274)
T 3i8s_A           81 I-LSGDADLLINVVDASN--LERNLYLTLQLLELGIPCIVALNMLDIAEKQNIRIEIDALSARL------GCPVIPLVST  151 (274)
T ss_dssp             H-HHTCCSEEEEEEEGGG--HHHHHHHHHHHHHHTCCEEEEEECHHHHHHTTEEECHHHHHHHH------TSCEEECCCG
T ss_pred             H-hhcCCCEEEEEecCCC--hHHHHHHHHHHHhcCCCEEEEEECccchhhhhHHHHHHHHHHhc------CCCEEEEEcC
Confidence            3 2245899999999986  34445666777777999999999999865332211223333332      4799999999


Q ss_pred             CCCChHHHHHHHHHhhc
Q 029158          178 SGAGIRSLRTVLSKIAR  194 (198)
Q Consensus       178 ~~~gi~~l~~~i~~~~~  194 (198)
                      +|.|+++++++|.+.+.
T Consensus       152 ~g~gi~el~~~i~~~~~  168 (274)
T 3i8s_A          152 RGRGIEALKLAIDRYKA  168 (274)
T ss_dssp             GGHHHHHHHHHHHTCCC
T ss_pred             CCCCHHHHHHHHHHHHh
Confidence            99999999999988764

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.93  E-value=5.5e-25  Score=176.08  Aligned_cols=172  Identities=20%  Similarity=0.258  Sum_probs=120.4

Q ss_pred             CCCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEE---EEEEeCCceEEEeCCCCccccchhHHHHHHHHHH
Q 029158           18 APDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---NFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELV   94 (198)
Q Consensus        18 ~~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~---~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~   94 (198)
                      ....++|+++|.+|+|||||+++|++. ......+++++|.+.   .+...+..+.+|||||+..........+.+... 
T Consensus       192 ~~~~~ki~ivG~~~vGKSslin~l~~~-~~~~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~-  269 (456)
T 4dcu_A          192 NEEVIQFCLIGRPNVGKSSLVNAMLGE-ERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVL-  269 (456)
T ss_dssp             CTTCEEEEEECSTTSSHHHHHHHHHTS-TTEEECC------CTTSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHH-
T ss_pred             ccccceeEEecCCCCCHHHHHHHHhCC-CccccCCCCCeEEEEEEEEEEECCceEEEEECCCCCcCcccchHHHHHHHH-
Confidence            345789999999999999999999987 446678888888763   344446689999999975422111101111111 


Q ss_pred             HHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcH--HHHHHHHHHHHHHHhccCCCCCcE
Q 029158           95 KEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPI--DVARRAMQIEESLKANNSLVQPVM  172 (198)
Q Consensus        95 ~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~v~  172 (198)
                       ..+.....+|++++|+|+++++...+.+++..+...++|+++|+||+|+....  ..++..+.+++.+...  ...+++
T Consensus       270 -~~~~~~~~ad~~llviD~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~--~~~~~~  346 (456)
T 4dcu_A          270 -RALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFL--DYAPIL  346 (456)
T ss_dssp             -HHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGG--TTSCEE
T ss_pred             -HHHHHHhhCCEEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccC--CCCCEE
Confidence             11222233899999999999888888888888888899999999999998643  3344445555443322  247999


Q ss_pred             EeccCCCCChHHHHHHHHHhhc
Q 029158          173 MVSSKSGAGIRSLRTVLSKIAR  194 (198)
Q Consensus       173 ~~Sa~~~~gi~~l~~~i~~~~~  194 (198)
                      ++||++|.|++++++++.+.+.
T Consensus       347 ~~SA~~g~gv~~l~~~i~~~~~  368 (456)
T 4dcu_A          347 FMSALTKKRIHTLMPAIIKASE  368 (456)
T ss_dssp             ECCTTTCTTGGGHHHHHHHHHH
T ss_pred             EEcCCCCcCHHHHHHHHHHHHH
Confidence            9999999999999999988664

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.93  E-value=2e-25  Score=177.69  Aligned_cols=171  Identities=20%  Similarity=0.259  Sum_probs=115.8

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE---EEEeCCceEEEeCCCCccccchhHHHHHHHHHHH
Q 029158           19 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVK   95 (198)
Q Consensus        19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~---~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~   95 (198)
                      ...++|+++|.+|+|||||+|+|++. .....++++++|.+..   +...+..+.+|||||+.......+..+.+..+  
T Consensus       173 ~~~~ki~lvG~~nvGKSSLin~l~~~-~~~~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~--  249 (436)
T 2hjg_A          173 EEVIQFCLIGRPNVGKSSLVNAMLGE-ERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVL--  249 (436)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHTS-TTEEEC---------CCEEEEETTEEEEETTHHHHTCBTTBCCCCSHHHHH--
T ss_pred             ccCcEEEEEcCCCCCHHHHHHHHhCC-CceeecCCCCceeeeeEEEEEECCeEEEEEECCCcCcCccccchHHHHHHH--
Confidence            45689999999999999999999998 4455778888887753   33345679999999974321110000111111  


Q ss_pred             HHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHH--HHHHHHHHHHHHHhccCCCCCcEE
Q 029158           96 EYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPID--VARRAMQIEESLKANNSLVQPVMM  173 (198)
Q Consensus        96 ~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~v~~  173 (198)
                      ..+.....+|++++|+|++++....+.+++..+...++|+++|+||+|+.....  .++..+.+.+.+...  ...++++
T Consensus       250 ~~~~~~~~ad~~llv~D~~~~~s~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~  327 (436)
T 2hjg_A          250 RALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFL--DYAPILF  327 (436)
T ss_dssp             HHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGG--TTSCEEE
T ss_pred             HHHHHHHhCCEEEEEEcCCcCCcHHHHHHHHHHHHcCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccC--CCCCEEE
Confidence            111122238999999999998888888888888878999999999999987543  334444555444322  2579999


Q ss_pred             eccCCCCChHHHHHHHHHhhc
Q 029158          174 VSSKSGAGIRSLRTVLSKIAR  194 (198)
Q Consensus       174 ~Sa~~~~gi~~l~~~i~~~~~  194 (198)
                      +||++|.|++++++.+.+.+.
T Consensus       328 ~SA~tg~~v~~l~~~i~~~~~  348 (436)
T 2hjg_A          328 MSALTKKRIHTLMPAIIKASE  348 (436)
T ss_dssp             CCTTTCTTGGGHHHHHHHHHH
T ss_pred             EecccCCCHHHHHHHHHHHHH
Confidence            999999999999999887654

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=99.93  E-value=3.5e-25  Score=164.80  Aligned_cols=160  Identities=24%  Similarity=0.324  Sum_probs=112.9

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEE---EEeCCceEEEeCCCCccccchhHHHHHHHHHHHH
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF---FKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE   96 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~---~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~   96 (198)
                      ..++|+++|.+|+|||||+|+|++..  ...++++++|.+...   ...+..+.+|||||+..-.... ..   +.+.+.
T Consensus         4 ~~~kI~lvG~~nvGKTsL~n~l~g~~--~~~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~-~~---e~v~~~   77 (258)
T 3a1s_A            4 HMVKVALAGCPNVGKTSLFNALTGTK--QYVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSS-ID---EKIARD   77 (258)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHTTC--EEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSS-HH---HHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHCCC--CcccCCCCceEEEEEEEEEECCeEEEEEECCCcCccCCCC-HH---HHHHHH
Confidence            35689999999999999999999974  446777888876542   2236689999999975432111 11   223344


Q ss_pred             HHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEecc
Q 029158           97 YVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSS  176 (198)
Q Consensus        97 ~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa  176 (198)
                      |+.. ..+|++++|+|+++  ......++..+.+.+.|+++|+||+|+............+.+.+      +++++++||
T Consensus        78 ~~~~-~~~d~ii~V~D~t~--~~~~~~~~~~l~~~~~pvilv~NK~Dl~~~~~i~~~~~~l~~~l------g~~vi~~SA  148 (258)
T 3a1s_A           78 YLLK-GDADLVILVADSVN--PEQSLYLLLEILEMEKKVILAMTAIDEAKKTGMKIDRYELQKHL------GIPVVFTSS  148 (258)
T ss_dssp             HHHH-SCCSEEEEEEETTS--CHHHHHHHHHHHTTTCCEEEEEECHHHHHHTTCCBCHHHHHHHH------CSCEEECCT
T ss_pred             HHhh-cCCCEEEEEeCCCc--hhhHHHHHHHHHhcCCCEEEEEECcCCCCccchHHHHHHHHHHc------CCCEEEEEe
Confidence            4432 45899999999986  23345566677777899999999999864322211122333322      479999999


Q ss_pred             CCCCChHHHHHHHHHhhc
Q 029158          177 KSGAGIRSLRTVLSKIAR  194 (198)
Q Consensus       177 ~~~~gi~~l~~~i~~~~~  194 (198)
                      ++|.|+++++++|.+.++
T Consensus       149 ~~g~gi~el~~~i~~~~~  166 (258)
T 3a1s_A          149 VTGEGLEELKEKIVEYAQ  166 (258)
T ss_dssp             TTCTTHHHHHHHHHHHHH
T ss_pred             eCCcCHHHHHHHHHHHhh
Confidence            999999999999988764

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=99.92  E-value=5.5e-26  Score=159.82  Aligned_cols=164  Identities=19%  Similarity=0.214  Sum_probs=109.4

Q ss_pred             CCCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEE---EEEEeCCceEEEeCCCCccccchhHHHHHHHHHH
Q 029158           18 APDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---NFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELV   94 (198)
Q Consensus        18 ~~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~---~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~   94 (198)
                      .+..++|+++|.+|+|||||+++|++.. . .....++++.+.   .+...+..+.+|||||...-..            
T Consensus         5 ~~~~~~i~v~G~~~~GKssl~~~l~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~------------   70 (178)
T 2lkc_A            5 VERPPVVTIMGHVDHGKTTLLDAIRHSK-V-TEQEAGGITQHIGAYQVTVNDKKITFLDTPGHEAFTT------------   70 (178)
T ss_dssp             CCCCCEEEEESCTTTTHHHHHHHHHTTC-S-SCSSCCSSSTTCCCCEEEETTEEEEESCCCSSSSSSC------------
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCCc-c-ccCCCCceeEeeeEEEEEeCCceEEEEECCCCHHHHH------------
Confidence            4567899999999999999999999874 1 122233333222   2333456789999999643210            


Q ss_pred             HHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHh--ccCCCCCcE
Q 029158           95 KEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKA--NNSLVQPVM  172 (198)
Q Consensus        95 ~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~~v~  172 (198)
                       ........+|++++|+|++++......+.+..+...+.|+++|+||+|+..... ++....+.+....  ..+...+++
T Consensus        71 -~~~~~~~~~d~~i~v~d~~~~~~~~~~~~l~~~~~~~~p~ilv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  148 (178)
T 2lkc_A           71 -MRARGAQVTDIVILVVAADDGVMPQTVEAINHAKAANVPIIVAINKMDKPEANP-DRVMQELMEYNLVPEEWGGDTIFC  148 (178)
T ss_dssp             -SCCSSCCCCCEEEEEEETTCCCCHHHHHHHHHHGGGSCCEEEEEETTTSSCSCH-HHHHHHHTTTTCCBTTTTSSEEEE
T ss_pred             -HHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHhCCCCEEEEEECccCCcCCH-HHHHHHHHhcCcChhHcCCcccEE
Confidence             112334558999999999876656666667767667899999999999986421 1111222111000  001125899


Q ss_pred             EeccCCCCChHHHHHHHHHhhcccc
Q 029158          173 MVSSKSGAGIRSLRTVLSKIARFAK  197 (198)
Q Consensus       173 ~~Sa~~~~gi~~l~~~i~~~~~~~r  197 (198)
                      ++||++|+|+++++++|.+.+...+
T Consensus       149 ~~Sa~~~~gv~~l~~~l~~~~~~~~  173 (178)
T 2lkc_A          149 KLSAKTKEGLDHLLEMILLVSEMEE  173 (178)
T ss_dssp             ECCSSSSHHHHHHHHHHHHHHHHTT
T ss_pred             EEecCCCCCHHHHHHHHHHhhhhhc
Confidence            9999999999999999998776543

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=99.92  E-value=5e-24  Score=153.83  Aligned_cols=182  Identities=36%  Similarity=0.473  Sum_probs=118.3

Q ss_pred             cCCCCCCCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEeCCceEEEeCCCCccccchhHHHHHHHH
Q 029158           13 SSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEE   92 (198)
Q Consensus        13 ~~~~~~~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~   92 (198)
                      ...++.....+|+++|++|+|||||+++|++........+.++++........+..+.++||||+..........+.|..
T Consensus        18 l~~~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~   97 (210)
T 1pui_A           18 IRHLPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAEVPEEMKRKWQR   97 (210)
T ss_dssp             GGGSSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEECCCCC------CCHHHHHH
T ss_pred             HhHCCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEEECcCCcccccCHHHHHHHHH
Confidence            33366667789999999999999999999987423444556666654433333347999999998542211222234455


Q ss_pred             HHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcE
Q 029158           93 LVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVM  172 (198)
Q Consensus        93 ~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~  172 (198)
                      ....+++....++.+++++|+..+....+.++...+...+.|+++|.||+|+.+..+.+.....+.+.+... .....++
T Consensus        98 ~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~-~~~~~~~  176 (210)
T 1pui_A           98 ALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLASGARKAQLNMVREAVLAF-NGDVQVE  176 (210)
T ss_dssp             HHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGG-CSCEEEE
T ss_pred             HHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEecccCCCchhHHHHHHHHHHHHHhc-CCCCceE
Confidence            566677666678999999999876554444556666667899999999999988654433234444444322 2245789


Q ss_pred             EeccCCCCChHHHHHHHHHhhcc
Q 029158          173 MVSSKSGAGIRSLRTVLSKIARF  195 (198)
Q Consensus       173 ~~Sa~~~~gi~~l~~~i~~~~~~  195 (198)
                      ++||+++.|+++++++|.+.+..
T Consensus       177 ~~Sal~~~~~~~l~~~l~~~~~~  199 (210)
T 1pui_A          177 TFSSLKKQGVDKLRQKLDTWFSE  199 (210)
T ss_dssp             ECBTTTTBSHHHHHHHHHHHHC-
T ss_pred             EEeecCCCCHHHHHHHHHHHHhh
Confidence            99999999999999999887643

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=99.92  E-value=6.6e-25  Score=156.98  Aligned_cols=163  Identities=14%  Similarity=0.135  Sum_probs=104.0

Q ss_pred             CCCCCCCeEEEEcCCCCCHHHHHHHHhcCccceee--cCCCCceeEEEEEEeCCceEEEeCCCCccccchhHHHHHHHHH
Q 029158           16 FPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRT--SDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEEL   93 (198)
Q Consensus        16 ~~~~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~   93 (198)
                      .++...++|+++|.+|+|||||+++|++.. ....  .+..+.+. ..+...+..+.+|||||....          ..+
T Consensus        12 ~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~-~~~~~~~~t~~~~~-~~~~~~~~~~~i~Dt~G~~~~----------~~~   79 (199)
T 4bas_A           12 GQSKTKLQVVMCGLDNSGKTTIINQVKPAQ-SSSKHITATVGYNV-ETFEKGRVAFTVFDMGGAKKF----------RGL   79 (199)
T ss_dssp             ----CEEEEEEECCTTSCHHHHHHHHSCCC-----CCCCCSSEEE-EEEEETTEEEEEEEECCSGGG----------GGG
T ss_pred             cCCCCCcEEEEECCCCCCHHHHHHHHhcCC-CcccccccccceeE-EEEEeCCEEEEEEECCCCHhH----------HHH
Confidence            345567899999999999999999999984 2221  22222111 123344678999999997331          111


Q ss_pred             HHHHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHhh-----------CCcEEEEEeccCCCCcHHHHHHHHHHHHHH
Q 029158           94 VKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS-----------QTKYQVVLTKTDTVFPIDVARRAMQIEESL  161 (198)
Q Consensus        94 ~~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~~-----------~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~  161 (198)
                      ...+   ...+|++++|+|+++...-.. ..++..+...           +.|+++|+||+|+......++....+....
T Consensus        80 ~~~~---~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~  156 (199)
T 4bas_A           80 WETY---YDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTT  156 (199)
T ss_dssp             GGGG---CTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHH
T ss_pred             HHHH---HhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchh
Confidence            2222   345999999999987422111 2333333322           789999999999987754444333333211


Q ss_pred             HhccCCCCCcEEeccCCCCChHHHHHHHHHhhc
Q 029158          162 KANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR  194 (198)
Q Consensus       162 ~~~~~~~~~v~~~Sa~~~~gi~~l~~~i~~~~~  194 (198)
                      . ......+++++||++|+|+++++++|.+.+.
T Consensus       157 ~-~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~  188 (199)
T 4bas_A          157 L-MGDHPFVIFASNGLKGTGVHEGFSWLQETAS  188 (199)
T ss_dssp             H-HTTSCEEEEECBTTTTBTHHHHHHHHHHHHH
T ss_pred             h-ccCCeeEEEEeeCCCccCHHHHHHHHHHHHH
Confidence            1 0223578999999999999999999988764

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=99.92  E-value=1.5e-24  Score=162.85  Aligned_cols=172  Identities=19%  Similarity=0.263  Sum_probs=105.9

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCC--------CCceeEEEEEEe---C--CceEEEeCCCCccccchhH-
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDK--------PGLTQTINFFKL---G--TKLCLVDLPGYGFAYAKEE-   85 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~--------~~~t~~~~~~~~---~--~~~~iiDtpG~~~~~~~~~-   85 (198)
                      ...+|+++|.+|+|||||+|+|++.. .. ...+        +.++.+......   +  .++.+|||||+++...... 
T Consensus         7 ~~~~I~vvG~~g~GKSTLin~L~~~~-~~-~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~   84 (274)
T 3t5d_A            7 FEFTLMVVGESGLGKSTLINSLFLTD-LY-SPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNC   84 (274)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHSSSC-C----------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTT
T ss_pred             cEEEEEEECCCCCCHHHHHHHHhCCC-cc-ccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhh
Confidence            45789999999999999999998874 22 2222        111222211111   2  3799999999976432211 


Q ss_pred             ---HHHHHHHHHHHHHhc----------ccccceEEEEEeCC-CCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHH
Q 029158           86 ---VKDAWEELVKEYVST----------RVSLKRVCLLIDTK-WGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVA  151 (198)
Q Consensus        86 ---~~~~~~~~~~~~~~~----------~~~~d~vi~v~d~~-~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~  151 (198)
                         ....+......|+..          ...+|+++|+++.. +++...+.++++.+.. ++|+|+|+||+|+.+..+..
T Consensus        85 ~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~-~~pvi~V~nK~D~~~~~e~~  163 (274)
T 3t5d_A           85 WQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE-KVNIIPLIAKADTLTPEECQ  163 (274)
T ss_dssp             THHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT-TSCEEEEESSGGGSCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc-cCCEEEEEeccCCCCHHHHH
Confidence               111112222333332          11256788888554 4777788888888877 89999999999999888777


Q ss_pred             HHHHHHHHHHHhccCCCCCcEEeccCCCCChHHHHHHHHHhhcccc
Q 029158          152 RRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIARFAK  197 (198)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~v~~~Sa~~~~gi~~l~~~i~~~~~~~r  197 (198)
                      ...+.+.+.+...   +.+++++||++++|+++++++|.+.++++-
T Consensus       164 ~~~~~i~~~l~~~---~i~v~~~sa~~~~~~~~l~~~l~~~~p~~v  206 (274)
T 3t5d_A          164 QFKKQIMKEIQEH---KIKIYEFPETDDEEENKLVKKIKDRLPLAV  206 (274)
T ss_dssp             HHHHHHHHHHHHT---TCCCCCC-----------CHHHHHTCSEEC
T ss_pred             HHHHHHHHHHHHc---CCeEEcCCCCCChhHHHHHHHHhcCCCcEE
Confidence            7767777666543   578999999999999999999999887753

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=99.92  E-value=3.2e-24  Score=155.29  Aligned_cols=158  Identities=22%  Similarity=0.334  Sum_probs=102.9

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEe----CCceEEEeCCCCccccchhHHHHHHHH-H
Q 029158           19 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL----GTKLCLVDLPGYGFAYAKEEVKDAWEE-L   93 (198)
Q Consensus        19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~----~~~~~iiDtpG~~~~~~~~~~~~~~~~-~   93 (198)
                      ...++|+++|.+|+|||||+++|++..   ....+++++.+......    +..+.+|||||...          +.. +
T Consensus         5 ~~~~ki~vvG~~~~GKTsli~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~----------~~~~~   71 (214)
T 2fh5_B            5 SSQRAVLFVGLCDSGKTLLFVRLLTGQ---YRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHES----------LRFQL   71 (214)
T ss_dssp             ---CEEEEECSTTSSHHHHHHHHHHSC---CCCBCCCCSCEEEEEECSSTTCCEEEEEECCCCHH----------HHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCC---cccccCCcceeeEEEEecCCCccEEEEEECCCChh----------HHHHH
Confidence            356899999999999999999999873   23334444443332222    35799999999621          122 3


Q ss_pred             HHHHHhcccccceEEEEEeCCCCCCcCcHH----HHHHHH-----hhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHh-
Q 029158           94 VKEYVSTRVSLKRVCLLIDTKWGVKPRDHE----LISLME-----RSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKA-  163 (198)
Q Consensus        94 ~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~----~~~~~~-----~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~-  163 (198)
                      ...|+.   .+|++++|+|+++ .......    +...+.     ..+.|+++|+||+|+......+...+.+.+.+.. 
T Consensus        72 ~~~~~~---~~~~~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~  147 (214)
T 2fh5_B           72 LDRFKS---SARAVVFVVDSAA-FQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTL  147 (214)
T ss_dssp             HHHHGG---GEEEEEEEEETTT-HHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHh---hCCEEEEEEECCC-cCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHH
Confidence            344443   3899999999975 1111112    222222     2268999999999998776666666666655541 


Q ss_pred             ------------------ccCC-------------CCCcEEeccCCC------CChHHHHHHHHHhh
Q 029158          164 ------------------NNSL-------------VQPVMMVSSKSG------AGIRSLRTVLSKIA  193 (198)
Q Consensus       164 ------------------~~~~-------------~~~v~~~Sa~~~------~gi~~l~~~i~~~~  193 (198)
                                        ....             ..+++++||++|      +|+++++++|.+.+
T Consensus       148 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~~  214 (214)
T 2fh5_B          148 RVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKIA  214 (214)
T ss_dssp             HHHCC------------CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHHC
T ss_pred             hccchhccccccCCccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHhC
Confidence                              1111             567999999999      99999999998753

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=99.92  E-value=9.7e-25  Score=175.31  Aligned_cols=162  Identities=23%  Similarity=0.354  Sum_probs=120.0

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCcc---c--eeecCCCCceeEEE---EEEeCCceEEEeCCCCccccchhHHHHHHH
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQWG---V--VRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAKEEVKDAWE   91 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~~~---~--~~~~~~~~~t~~~~---~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~   91 (198)
                      ..++|+++|.+++|||||+++|++...   .  ......+++|.+..   +...+..+.+|||||+             .
T Consensus        18 ~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh-------------~   84 (482)
T 1wb1_A           18 KNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGH-------------A   84 (482)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSH-------------H
T ss_pred             CCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECCEEEEEEECCCh-------------H
Confidence            357899999999999999999998731   1  12233445565543   2223568999999996             4


Q ss_pred             HHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhc-cCCCCC
Q 029158           92 ELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKAN-NSLVQP  170 (198)
Q Consensus        92 ~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~~  170 (198)
                      .+...+......+|++++|+|++++......+.+..+...++|+++|+||+|+.+....+...+++.+.+... .....+
T Consensus        85 ~~~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~  164 (482)
T 1wb1_A           85 DLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSS  164 (482)
T ss_dssp             HHHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHTTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCC
T ss_pred             HHHHHHHHHHhhCCEEEEEEecCCCccHHHHHHHHHHHHcCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccce
Confidence            4555666677779999999999998877888888888888999999999999998666666667777666544 233579


Q ss_pred             cEEeccCCCCChHHHHHHHHHhhc
Q 029158          171 VMMVSSKSGAGIRSLRTVLSKIAR  194 (198)
Q Consensus       171 v~~~Sa~~~~gi~~l~~~i~~~~~  194 (198)
                      ++++||++|+|+++|+++|.+.+.
T Consensus       165 ii~vSA~~g~gI~~L~~~L~~~i~  188 (482)
T 1wb1_A          165 IIPISAKTGFGVDELKNLIITTLN  188 (482)
T ss_dssp             EEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHHHhhc
Confidence            999999999999999999998664

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=99.92  E-value=1.6e-24  Score=170.91  Aligned_cols=164  Identities=18%  Similarity=0.234  Sum_probs=117.5

Q ss_pred             CCCCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEE---------------------E-EEEeCCceEEEeC
Q 029158           17 PAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---------------------N-FFKLGTKLCLVDL   74 (198)
Q Consensus        17 ~~~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~---------------------~-~~~~~~~~~iiDt   74 (198)
                      ......+|+++|.+|+|||||+++|++.. ......+..++...                     . .......+.+|||
T Consensus         4 ~~~~~~~I~vvG~~~~GKSTLi~~L~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDt   82 (403)
T 3sjy_A            4 KVQPEVNIGVVGHVDHGKTTLVQAITGIW-TSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDA   82 (403)
T ss_dssp             CCCCCCEEEEECSTTSSHHHHHHHHHSCC-CCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEEC
T ss_pred             ccCCCcEEEEECCCCCCHHHHHHHHhCcc-cccccCccccceeeccccccccceecccccccccccccccccceEEEEEC
Confidence            34567899999999999999999999852 11000000000000                     0 0011156899999


Q ss_pred             CCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCC-CcCcHHHHHHHHhhC-CcEEEEEeccCCCCcHHHHH
Q 029158           75 PGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGV-KPRDHELISLMERSQ-TKYQVVLTKTDTVFPIDVAR  152 (198)
Q Consensus        75 pG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~-~~~~~~~~~~~~~~~-~p~iiv~nK~Dl~~~~~~~~  152 (198)
                      ||+             ..+...+......+|++++|+|++++. .....+++..+...+ .|+++|+||+|+.+.....+
T Consensus        83 PGh-------------~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~  149 (403)
T 3sjy_A           83 PGH-------------EVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKEEALS  149 (403)
T ss_dssp             CCC-------------GGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHHHHH
T ss_pred             CCc-------------HHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCCCCEEEEEECccccchHHHHH
Confidence            997             233444555556699999999999876 555667777776655 48999999999998877767


Q ss_pred             HHHHHHHHHHhccCCCCCcEEeccCCCCChHHHHHHHHHhhc
Q 029158          153 RAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR  194 (198)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~v~~~Sa~~~~gi~~l~~~i~~~~~  194 (198)
                      ..+.+.+.+........+++++||++|+|+++|+++|.+.+.
T Consensus       150 ~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~  191 (403)
T 3sjy_A          150 QYRQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIK  191 (403)
T ss_dssp             HHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHhhCCCCCEEEEEECCCCcChHHHHHHHHHhCC
Confidence            777777766655555789999999999999999999998654

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=99.92  E-value=4.1e-25  Score=157.24  Aligned_cols=162  Identities=14%  Similarity=0.156  Sum_probs=100.6

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCcee-EE-EEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHH
Q 029158           19 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQ-TI-NFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE   96 (198)
Q Consensus        19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~-~~-~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~   96 (198)
                      ....+|+++|.+|+|||||+++|++.. . ....+..+.. .. .+...+..+.+|||||....          ......
T Consensus        19 ~~~~ki~v~G~~~~GKSsli~~l~~~~-~-~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~----------~~~~~~   86 (190)
T 2h57_A           19 SKEVHVLCLGLDNSGKTTIINKLKPSN-A-QSQNILPTIGFSIEKFKSSSLSFTVFDMSGQGRY----------RNLWEH   86 (190)
T ss_dssp             --CEEEEEEECTTSSHHHHHHHTSCGG-G-CCSSCCCCSSEEEEEEECSSCEEEEEEECCSTTT----------GGGGGG
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCC-C-CCCCcCCccceeEEEEEECCEEEEEEECCCCHHH----------HHHHHH
Confidence            346799999999999999999999873 1 1122222221 11 12223678999999996432          111122


Q ss_pred             HHhcccccceEEEEEeCCCCCCcCc-HHHHHHH-Hh-----hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCC
Q 029158           97 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLM-ER-----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQ  169 (198)
Q Consensus        97 ~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~-~~-----~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  169 (198)
                      ++   ..+|++++|+|+++...... ..++..+ ..     .+.|+++|+||+|+......++..+.+.  +........
T Consensus        87 ~~---~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~--~~~~~~~~~  161 (190)
T 2h57_A           87 YY---KEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLC--LENIKDKPW  161 (190)
T ss_dssp             GG---GGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCCHHHHHHHHT--GGGCCSSCE
T ss_pred             HH---hcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCCCHHHHHHHhC--hhhccCCce
Confidence            22   34899999999986311111 1233333 22     3689999999999986543333222221  012222357


Q ss_pred             CcEEeccCCCCChHHHHHHHHHhhcccc
Q 029158          170 PVMMVSSKSGAGIRSLRTVLSKIARFAK  197 (198)
Q Consensus       170 ~v~~~Sa~~~~gi~~l~~~i~~~~~~~r  197 (198)
                      +++++||++|+|+++++++|.+.++..+
T Consensus       162 ~~~~~Sa~~~~gi~~l~~~l~~~i~~~k  189 (190)
T 2h57_A          162 HICASDAIKGEGLQEGVDWLQDQIQTVK  189 (190)
T ss_dssp             EEEECBTTTTBTHHHHHHHHHHHC----
T ss_pred             EEEEccCCCCcCHHHHHHHHHHHHHHhc
Confidence            8999999999999999999999887653

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.92  E-value=1.8e-24  Score=172.31  Aligned_cols=161  Identities=19%  Similarity=0.257  Sum_probs=104.5

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEE---EeCCceEEEeCCCCccccchhHHHHHHHHHHHHHH
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF---KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV   98 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~---~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~   98 (198)
                      |+|+++|.+|+|||||+|+|++. ..+.+.+.+++|++....   ..+..+.+|||||+.... .+.....+......++
T Consensus         2 ~~v~ivG~pnvGKStL~nrl~~~-~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~-~~~~~~~~~~~~~~~~   79 (439)
T 1mky_A            2 ATVLIVGRPNVGKSTLFNKLVKK-KKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNP-QDIISQKMKEVTLNMI   79 (439)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHC---------------CCSEEEEEETTEEEEEEECTTTTSSG-GGCCCHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC-CCceecCCCCCccceeeEEEEECCeEEEEEECCCccccc-cchHHHHHHHHHHHHH
Confidence            68999999999999999999998 455678888888774422   236689999999975421 1111111222222333


Q ss_pred             hcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEeccCC
Q 029158           99 STRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKS  178 (198)
Q Consensus        99 ~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~  178 (198)
                         ..+|++++|+|+..++...+.++.+.++..++|+++|+||+|+....  .   ......+...  ...+++++||++
T Consensus        80 ---~~ad~il~V~D~~~~~~~~d~~i~~~l~~~~~p~ilv~NK~D~~~~~--~---~~~~~~~~~l--g~~~~~~iSA~~  149 (439)
T 1mky_A           80 ---READLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENLREF--E---REVKPELYSL--GFGEPIPVSAEH  149 (439)
T ss_dssp             ---TTCSEEEEEEETTTCCCHHHHHHHHHHHHHTCCEEEEEESCCSHHHH--H---HHTHHHHGGG--SSCSCEECBTTT
T ss_pred             ---HhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCcccc--H---HHHHHHHHhc--CCCCEEEEeccC
Confidence               44999999999998877777777787887899999999999985321  1   1121112211  123689999999


Q ss_pred             CCChHHHHHHHHHhhc
Q 029158          179 GAGIRSLRTVLSKIAR  194 (198)
Q Consensus       179 ~~gi~~l~~~i~~~~~  194 (198)
                      |.|++++++++.+.+.
T Consensus       150 g~gv~~L~~~i~~~l~  165 (439)
T 1mky_A          150 NINLDTMLETIIKKLE  165 (439)
T ss_dssp             TBSHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHhcc
Confidence            9999999999987764

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=99.92  E-value=8.7e-25  Score=153.35  Aligned_cols=157  Identities=23%  Similarity=0.243  Sum_probs=105.5

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE---EEEeCCceEEEeCCCCccccchhHHHHHHHHHHHHH
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY   97 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~---~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~   97 (198)
                      ..+|+++|.+|+|||||+++|++. ......+++++|.+..   +...+..+.+|||||+......  ...   ......
T Consensus         4 ~~ki~ivG~~g~GKStLl~~l~~~-~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~--~~~---~~~~~~   77 (172)
T 2gj8_A            4 GMKVVIAGRPNAGKSSLLNALAGR-EAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDE--VER---IGIERA   77 (172)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTS-CCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSH--HHH---HHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC-CcceeeCCCCceeceeeEEEEECCeEEEEEECCCcccchhH--HHH---HHHHHH
Confidence            468999999999999999999987 3334566677775432   2223557899999998542111  110   001111


Q ss_pred             HhcccccceEEEEEeCCCCCCcCcHHHHHHHHhh---CCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEe
Q 029158           98 VSTRVSLKRVCLLIDTKWGVKPRDHELISLMERS---QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMV  174 (198)
Q Consensus        98 ~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~---~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  174 (198)
                      +.....+|++++|+|+++........++..+...   +.|+++|+||+|+.....            ........+++++
T Consensus        78 ~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~------------~~~~~~~~~~~~~  145 (172)
T 2gj8_A           78 WQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETL------------GMSEVNGHALIRL  145 (172)
T ss_dssp             HHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHHCCCC------------EEEEETTEEEEEC
T ss_pred             HHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHhcccCCCEEEEEECccCCcchh------------hhhhccCCceEEE
Confidence            1222448999999999886655555565555543   589999999999854210            0001124689999


Q ss_pred             ccCCCCChHHHHHHHHHhhcc
Q 029158          175 SSKSGAGIRSLRTVLSKIARF  195 (198)
Q Consensus       175 Sa~~~~gi~~l~~~i~~~~~~  195 (198)
                      ||++|+|+++++++|.+.+..
T Consensus       146 SA~~g~gv~~l~~~l~~~~~~  166 (172)
T 2gj8_A          146 SARTGEGVDVLRNHLKQSMGF  166 (172)
T ss_dssp             CTTTCTTHHHHHHHHHHHC--
T ss_pred             eCCCCCCHHHHHHHHHHHhhh
Confidence            999999999999999887653

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=99.92  E-value=5.3e-25  Score=153.71  Aligned_cols=160  Identities=16%  Similarity=0.110  Sum_probs=102.1

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHHHH
Q 029158           19 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV   98 (198)
Q Consensus        19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~   98 (198)
                      ....+|+++|.+|+|||||+++|++.. .....+..+.+. ..+...+..+.+|||||....          .....   
T Consensus         5 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~~-~~~~~~~~~~~~~Dt~G~~~~----------~~~~~---   69 (171)
T 1upt_A            5 TREMRILILGLDGAGKTTILYRLQVGE-VVTTIPTIGFNV-ETVTYKNLKFQVWDLGGLTSI----------RPYWR---   69 (171)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHSS-CCCCCCCSSEEE-EEEEETTEEEEEEEECCCGGG----------GGGGG---
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCC-CCCcCCcCccce-EEEEECCEEEEEEECCCChhh----------hHHHH---
Confidence            346789999999999999999999873 221111111111 112223678999999997331          11111   


Q ss_pred             hcccccceEEEEEeCCCCCCcCc-HHHH-HHHHh---hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEE
Q 029158           99 STRVSLKRVCLLIDTKWGVKPRD-HELI-SLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMM  173 (198)
Q Consensus        99 ~~~~~~d~vi~v~d~~~~~~~~~-~~~~-~~~~~---~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  173 (198)
                      .....+|++++|+|+++...-.. ..++ ..+..   .+.|+++|+||+|+....+..+....+..  ........++++
T Consensus        70 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~--~~~~~~~~~~~~  147 (171)
T 1upt_A           70 CYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGL--PALKDRKWQIFK  147 (171)
T ss_dssp             GGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTG--GGCTTSCEEEEE
T ss_pred             HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCCHHHHHHHhCc--hhccCCceEEEE
Confidence            22345899999999987432211 2233 33332   47999999999999876443333222211  112223468999


Q ss_pred             eccCCCCChHHHHHHHHHhhcc
Q 029158          174 VSSKSGAGIRSLRTVLSKIARF  195 (198)
Q Consensus       174 ~Sa~~~~gi~~l~~~i~~~~~~  195 (198)
                      +||++|+|+++++++|.+.+..
T Consensus       148 ~Sa~~~~gi~~l~~~l~~~i~~  169 (171)
T 1upt_A          148 TSATKGTGLDEAMEWLVETLKS  169 (171)
T ss_dssp             CCTTTCTTHHHHHHHHHHHHHT
T ss_pred             CcCCCCcCHHHHHHHHHHHHhh
Confidence            9999999999999999987653

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=99.92  E-value=3.5e-25  Score=156.46  Aligned_cols=158  Identities=16%  Similarity=0.136  Sum_probs=101.9

Q ss_pred             CCCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHHH
Q 029158           18 APDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY   97 (198)
Q Consensus        18 ~~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~   97 (198)
                      .....+|+++|.+|+|||||+++|++.. .....+..+.+.. .+...+..+.+|||||....          ......+
T Consensus        18 ~~~~~~i~v~G~~~~GKSsli~~l~~~~-~~~~~~t~~~~~~-~~~~~~~~~~i~Dt~G~~~~----------~~~~~~~   85 (181)
T 2h17_A           18 GSQEHKVIIVGLDNAGKTTILYQFSMNE-VVHTSPTIGSNVE-EIVINNTRFLMWDIGGQESL----------RSSWNTY   85 (181)
T ss_dssp             ---CEEEEEEEETTSSHHHHHHHHHTTS-CEEEECCSSSSCE-EEEETTEEEEEEEESSSGGG----------TCGGGGG
T ss_pred             CCceeEEEEECCCCCCHHHHHHHHhcCC-CCccCCcCceeeE-EEEECCEEEEEEECCCCHhH----------HHHHHHH
Confidence            3456799999999999999999999884 3444444433321 22234678999999997331          1111222


Q ss_pred             HhcccccceEEEEEeCCCCCCcCc-HHHHHHHH----hhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcE
Q 029158           98 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLME----RSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVM  172 (198)
Q Consensus        98 ~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~----~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~  172 (198)
                         ...+|++++|+|+++...... ..++..+.    ..+.|+++|+||+|+......++..+.+.  .........+++
T Consensus        86 ---~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~--~~~~~~~~~~~~  160 (181)
T 2h17_A           86 ---YTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLK--LTSIKDHQWHIQ  160 (181)
T ss_dssp             ---GTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTT--GGGCCSSCEEEE
T ss_pred             ---hccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccCCCHHHHHHHhC--cccccCCceEEE
Confidence               344899999999987422222 22333332    24799999999999987533333222221  111122346899


Q ss_pred             EeccCCCCChHHHHHHHHHh
Q 029158          173 MVSSKSGAGIRSLRTVLSKI  192 (198)
Q Consensus       173 ~~Sa~~~~gi~~l~~~i~~~  192 (198)
                      ++||++|+|+++++++|.+.
T Consensus       161 ~~Sa~~g~gi~~l~~~l~~~  180 (181)
T 2h17_A          161 ACCALTGEGLCQGLEWMMSR  180 (181)
T ss_dssp             ECBTTTTBTHHHHHHHHHTC
T ss_pred             EccCCCCcCHHHHHHHHHhh
Confidence            99999999999999999764

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=99.92  E-value=1.3e-24  Score=153.61  Aligned_cols=160  Identities=17%  Similarity=0.197  Sum_probs=102.8

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHHHH
Q 029158           19 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV   98 (198)
Q Consensus        19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~   98 (198)
                      ....+|+++|++|+|||||+++|.+. ......+..+.+.. .+...+..+.+|||||...-          ......++
T Consensus        14 ~~~~ki~ivG~~~vGKSsL~~~l~~~-~~~~~~~t~g~~~~-~~~~~~~~l~i~Dt~G~~~~----------~~~~~~~~   81 (181)
T 1fzq_A           14 DQEVRILLLGLDNAGKTTLLKQLASE-DISHITPTQGFNIK-SVQSQGFKLNVWDIGGQRKI----------RPYWRSYF   81 (181)
T ss_dssp             SSCEEEEEEESTTSSHHHHHHHHCCS-CCEEEEEETTEEEE-EEEETTEEEEEEECSSCGGG----------HHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhcC-CCCcccCcCCeEEE-EEEECCEEEEEEECCCCHHH----------HHHHHHHh
Confidence            45789999999999999999999987 33333333332221 12223678999999996321          22333444


Q ss_pred             hcccccceEEEEEeCCCCCCcCc-HHHHHHH-H---hhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEE
Q 029158           99 STRVSLKRVCLLIDTKWGVKPRD-HELISLM-E---RSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMM  173 (198)
Q Consensus        99 ~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~-~---~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  173 (198)
                      .   .+|++++|+|+++...... ..++..+ .   ..+.|+++|+||+|+......++..+.+.  .........++++
T Consensus        82 ~---~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~--~~~~~~~~~~~~~  156 (181)
T 1fzq_A           82 E---NTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLN--LHTIRDRVWQIQS  156 (181)
T ss_dssp             T---TCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTT--GGGCCSSCEEEEE
T ss_pred             C---CCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCCHHHHHHHhC--chhccCCceEEEE
Confidence            4   3899999999986322111 1233333 2   23689999999999987543322222211  1111223467999


Q ss_pred             eccCCCCChHHHHHHHHHhhcc
Q 029158          174 VSSKSGAGIRSLRTVLSKIARF  195 (198)
Q Consensus       174 ~Sa~~~~gi~~l~~~i~~~~~~  195 (198)
                      +||++|+|+++++++|.+.+..
T Consensus       157 ~Sa~~g~gi~~l~~~l~~~~~~  178 (181)
T 1fzq_A          157 CSALTGEGVQDGMNWVCKNVNA  178 (181)
T ss_dssp             CCTTTCTTHHHHHHHHHHTC--
T ss_pred             ccCCCCCCHHHHHHHHHHHHHh
Confidence            9999999999999999887654

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=99.92  E-value=4.7e-24  Score=168.61  Aligned_cols=164  Identities=20%  Similarity=0.294  Sum_probs=119.8

Q ss_pred             CCCCCeEEEEcCCCCCHHHHHHHHhcCcc-ceeecCCCCceeEEEEEE--------------------------eCCceE
Q 029158           18 APDLPEIAFAGRSNVGKSSMLNALTRQWG-VVRTSDKPGLTQTINFFK--------------------------LGTKLC   70 (198)
Q Consensus        18 ~~~~~~v~~vG~~~~GKSsli~~l~~~~~-~~~~~~~~~~t~~~~~~~--------------------------~~~~~~   70 (198)
                      .....+|+++|.+++|||||+++|++... .......++.|.+..+..                          ....+.
T Consensus         7 ~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~   86 (410)
T 1kk1_A            7 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVS   86 (410)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEE
T ss_pred             CCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEE
Confidence            34567899999999999999999996521 111122244454332111                          015699


Q ss_pred             EEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCC-CcCcHHHHHHHHhhC-CcEEEEEeccCCCCcH
Q 029158           71 LVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGV-KPRDHELISLMERSQ-TKYQVVLTKTDTVFPI  148 (198)
Q Consensus        71 iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~-~~~~~~~~~~~~~~~-~p~iiv~nK~Dl~~~~  148 (198)
                      +|||||+             ..+...++.....+|++++|+|++++. .....+.+..+...+ .|+++|+||+|+....
T Consensus        87 iiDtPGh-------------~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~~~~~iivviNK~Dl~~~~  153 (410)
T 1kk1_A           87 FIDAPGH-------------EALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELVDKE  153 (410)
T ss_dssp             EEECSSH-------------HHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHH
T ss_pred             EEECCCh-------------HHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEECccCCCHH
Confidence            9999996             455667788888899999999999876 555666666666555 4799999999999876


Q ss_pred             HHHHHHHHHHHHHHhccCCCCCcEEeccCCCCChHHHHHHHHHhhc
Q 029158          149 DVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR  194 (198)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~~~gi~~l~~~i~~~~~  194 (198)
                      ...+..+++++.+........+++++||++|+|+++|+++|.+.++
T Consensus       154 ~~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~  199 (410)
T 1kk1_A          154 KALENYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIP  199 (410)
T ss_dssp             HHHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence            5555556666655543344689999999999999999999998664

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=99.92  E-value=5.6e-25  Score=156.36  Aligned_cols=159  Identities=14%  Similarity=0.104  Sum_probs=101.3

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCce-eEE-EEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHHH
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT-QTI-NFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY   97 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t-~~~-~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~   97 (198)
                      ...+|+++|.+|+|||||+++|++....   ..+.+|. ... .+...+..+.+|||||...          +......+
T Consensus        21 ~~~ki~v~G~~~~GKSsli~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~----------~~~~~~~~   87 (188)
T 1zd9_A           21 EEMELTLVGLQYSGKTTFVNVIASGQFN---EDMIPTVGFNMRKITKGNVTIKLWDIGGQPR----------FRSMWERY   87 (188)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCC---CSCCCCCSEEEEEEEETTEEEEEEEECCSHH----------HHTTHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHHcCCCC---CccCCCCceeEEEEEeCCEEEEEEECCCCHh----------HHHHHHHH
Confidence            3578999999999999999999987321   1222111 111 1233467899999999621          22333344


Q ss_pred             HhcccccceEEEEEeCCCCCCcCc-HHHHHHH-Hh---hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcE
Q 029158           98 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLM-ER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVM  172 (198)
Q Consensus        98 ~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~-~~---~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~  172 (198)
                      +.   .+|++++|+|+++...... ..++..+ ..   .+.|+++|+||+|+....+.++..+.+..  ........+++
T Consensus        88 ~~---~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~--~~~~~~~~~~~  162 (188)
T 1zd9_A           88 CR---GVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNL--SAIQDREICCY  162 (188)
T ss_dssp             HT---TCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTG--GGCCSSCEEEE
T ss_pred             Hc---cCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCCCHHHHHHHhCh--hhhccCCeeEE
Confidence            43   4899999999976321111 2233333 22   47899999999999865333222222211  11112346789


Q ss_pred             EeccCCCCChHHHHHHHHHhhccc
Q 029158          173 MVSSKSGAGIRSLRTVLSKIARFA  196 (198)
Q Consensus       173 ~~Sa~~~~gi~~l~~~i~~~~~~~  196 (198)
                      ++||++|.|+++++++|.+.+...
T Consensus       163 ~~SA~~g~gv~~l~~~l~~~~~~~  186 (188)
T 1zd9_A          163 SISCKEKDNIDITLQWLIQHSKSR  186 (188)
T ss_dssp             ECCTTTCTTHHHHHHHHHHTCC--
T ss_pred             EEECCCCCCHHHHHHHHHHHHHhh
Confidence            999999999999999999887653

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=99.92  E-value=5.5e-25  Score=153.30  Aligned_cols=158  Identities=27%  Similarity=0.329  Sum_probs=101.3

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEE---EEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHHHH
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---NFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV   98 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~---~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~   98 (198)
                      .+|+++|++|+|||||+++|++..  .....++++|.+.   .+...+..+.+|||||........ .   ...+...|+
T Consensus         4 ~~v~lvG~~gvGKStL~~~l~~~~--~~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~-~---~~~~~~~~~   77 (165)
T 2wji_A            4 YEIALIGNPNVGKSTIFNALTGEN--VYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANS-I---DEIIARDYI   77 (165)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHCCS--SSCC-----CCCCCEEEEEETTEEEEEEECCCCSCSSSSS-H---HHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCC--eeccCCCCcceeeeEEEEEECCcEEEEEECCCcccCCCcc-h---hHHHHHHHH
Confidence            689999999999999999999863  2234445544432   122235679999999975421111 1   122333444


Q ss_pred             hcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEeccCC
Q 029158           99 STRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKS  178 (198)
Q Consensus        99 ~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~  178 (198)
                      .. ..+|++++|+|+.+  ......++..+...+.|+++|+||+|+..........+.+.+.+      +.+++++||++
T Consensus        78 ~~-~~~~~~i~v~D~~~--~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~------~~~~~~~SA~~  148 (165)
T 2wji_A           78 IN-EKPDLVVNIVDATA--LERNLYLTLQLMEMGANLLLALNKMDLAKSLGIEIDVDKLEKIL------GVKVVPLSAAK  148 (165)
T ss_dssp             HH-HCCSEEEEEEETTC--HHHHHHHHHHHHHTTCCEEEEEECHHHHHHTTCCCCHHHHHHHH------TSCEEECBGGG
T ss_pred             hc-CCCCEEEEEecCCc--hhHhHHHHHHHHhcCCCEEEEEEchHhccccChhhHHHHHHHHh------CCCEEEEEcCC
Confidence            31 24899999999975  12233455556666899999999999854221111112222222      36899999999


Q ss_pred             CCChHHHHHHHHHhhc
Q 029158          179 GAGIRSLRTVLSKIAR  194 (198)
Q Consensus       179 ~~gi~~l~~~i~~~~~  194 (198)
                      |+|+++++++|.+.++
T Consensus       149 ~~~v~~l~~~l~~~~~  164 (165)
T 2wji_A          149 KMGIEELKKAISIAVK  164 (165)
T ss_dssp             TBSHHHHHHHHHHHTT
T ss_pred             CCCHHHHHHHHHHHhh
Confidence            9999999999988764

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.92  E-value=1.4e-24  Score=172.86  Aligned_cols=159  Identities=19%  Similarity=0.290  Sum_probs=101.2

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEe---CCceEEEeCCCCccccchhHHHHHHHHHHHHH
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY   97 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~   97 (198)
                      .++|+++|.+|+|||||+|+|++. ..+.+.+.+++|++......   +..+.+|||||+....  ......+......+
T Consensus         3 ~~~V~ivG~~nvGKStL~n~l~~~-~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~--~~~~~~~~~~~~~~   79 (436)
T 2hjg_A            3 KPVVAIVGRPNVGKSTIFNRIAGE-RISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGD--EPFLAQIRQQAEIA   79 (436)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHEEE-ECC-----------CEEEECTTCSSCCEEEC-----------CHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC-CceeecCCCCCccceEEEEEEECCceEEEEECCCCCCcc--hhHHHHHHHHHHHH
Confidence            478999999999999999999987 45667888899988665443   5789999999985321  11222223333333


Q ss_pred             HhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEeccC
Q 029158           98 VSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSK  177 (198)
Q Consensus        98 ~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~  177 (198)
                      +.   .+|++++|+|+..+....+.++.+.++..++|+++|+||+|+.....      ...+ +...  ...+++++||+
T Consensus        80 ~~---~ad~il~vvD~~~~~~~~d~~~~~~l~~~~~pvilv~NK~D~~~~~~------~~~~-~~~l--g~~~~~~iSA~  147 (436)
T 2hjg_A           80 MD---EADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTEMRA------NIYD-FYSL--GFGEPYPISGT  147 (436)
T ss_dssp             HH---HCSEEEEEEETTTCSCHHHHHHHHHHTTCCSCEEEEEECCCC-----------CCCS-SGGG--SSCCCEECBTT
T ss_pred             HH---hCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccCccchh------hHHH-HHHc--CCCCeEEEeCc
Confidence            33   39999999999998887777778888877899999999999975321      0111 1111  12378999999


Q ss_pred             CCCChHHHHHHHHHhhc
Q 029158          178 SGAGIRSLRTVLSKIAR  194 (198)
Q Consensus       178 ~~~gi~~l~~~i~~~~~  194 (198)
                      +|.|++++++++.+.+.
T Consensus       148 ~g~gv~~L~~~i~~~l~  164 (436)
T 2hjg_A          148 HGLGLGDLLDAVAEHFK  164 (436)
T ss_dssp             TTBTHHHHHHHHHHTGG
T ss_pred             CCCChHHHHHHHHHhcC
Confidence            99999999999998775

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=99.92  E-value=3.2e-24  Score=148.83  Aligned_cols=156  Identities=16%  Similarity=0.119  Sum_probs=98.8

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeE-EEEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHHHHhc
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT-INFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVST  100 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~  100 (198)
                      .+|+++|.+|+|||||++++++... ..  ..+..... ..+...+..+.+|||||....          ......++. 
T Consensus         1 ~ki~~~G~~~~GKssl~~~l~~~~~-~~--~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~----------~~~~~~~~~-   66 (164)
T 1r8s_A            1 MRILMVGLDAAGKTTILYKLKLGEI-VT--TIPTIGFNVETVEYKNISFTVWDVGGQDKI----------RPLWRHYFQ-   66 (164)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCS-SC--CCCCSSCCEEEEECSSCEEEEEECCCCGGG----------HHHHHHHTT-
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCc-Cc--ccCcCceeEEEEEECCEEEEEEEcCCChhh----------HHHHHHHhc-
Confidence            3799999999999999999998632 21  11111111 122234678999999997321          233333443 


Q ss_pred             ccccceEEEEEeCCCCCCcCc-HHHHHHHHh----hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEec
Q 029158          101 RVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVS  175 (198)
Q Consensus       101 ~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~----~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~S  175 (198)
                        .+|++++|+|+++...-.. ..++..+..    .+.|+++|+||+|+......++....+..  ........+++++|
T Consensus        67 --~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~--~~~~~~~~~~~~~S  142 (164)
T 1r8s_A           67 --NTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGL--HSLRHRNWYIQATC  142 (164)
T ss_dssp             --TCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTG--GGCSSCCEEEEECB
T ss_pred             --cCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCCCHHHHHHHhCc--ccccCccEEEEEcc
Confidence              4899999999986321111 223333322    27899999999999875433322222111  11122346799999


Q ss_pred             cCCCCChHHHHHHHHHhhcc
Q 029158          176 SKSGAGIRSLRTVLSKIARF  195 (198)
Q Consensus       176 a~~~~gi~~l~~~i~~~~~~  195 (198)
                      |++|.|+++++++|.+.+..
T Consensus       143 a~~~~gi~~l~~~l~~~i~~  162 (164)
T 1r8s_A          143 ATSGDGLYEGLDWLSNQLRN  162 (164)
T ss_dssp             TTTTBTHHHHHHHHHHHC--
T ss_pred             cCCCcCHHHHHHHHHHHHhh
Confidence            99999999999999987653

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=99.92  E-value=2.5e-24  Score=152.54  Aligned_cols=159  Identities=15%  Similarity=0.080  Sum_probs=102.1

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHHHH
Q 029158           19 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV   98 (198)
Q Consensus        19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~   98 (198)
                      ....+|+++|.+|+|||||++++++.. .....+..+.+. ..+...+..+.+|||||...             ......
T Consensus        16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~~-~~~~~~~~~~~~~Dt~G~~~-------------~~~~~~   80 (186)
T 1ksh_A           16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFNI-KTLEHRGFKLNIWDVGGQKS-------------LRSYWR   80 (186)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEEE-EEEEETTEEEEEEEECCSHH-------------HHTTGG
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCccce-EEEEECCEEEEEEECCCCHh-------------HHHHHH
Confidence            567899999999999999999999873 222222212111 12222367899999999621             111222


Q ss_pred             hcccccceEEEEEeCCCCCCcCc-HHHHHHHHh----hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEE
Q 029158           99 STRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMM  173 (198)
Q Consensus        99 ~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~----~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  173 (198)
                      .....+|++++|+|+++...-.. ..++..+..    .+.|+++|+||+|+......++..+.+..  ........++++
T Consensus        81 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~--~~~~~~~~~~~~  158 (186)
T 1ksh_A           81 NYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALEL--DSIRSHHWRIQG  158 (186)
T ss_dssp             GGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTG--GGCCSSCEEEEE
T ss_pred             HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCCHHHHHHHhCh--hhccCCceEEEE
Confidence            33445899999999986422111 123333322    36899999999999876443332222210  111233568999


Q ss_pred             eccCCCCChHHHHHHHHHhhc
Q 029158          174 VSSKSGAGIRSLRTVLSKIAR  194 (198)
Q Consensus       174 ~Sa~~~~gi~~l~~~i~~~~~  194 (198)
                      +||++|+|+++++++|.+.+.
T Consensus       159 ~Sa~~~~gi~~l~~~l~~~i~  179 (186)
T 1ksh_A          159 CSAVTGEDLLPGIDWLLDDIS  179 (186)
T ss_dssp             CCTTTCTTHHHHHHHHHHHHH
T ss_pred             eeCCCCCCHHHHHHHHHHHHH
Confidence            999999999999999988764

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=99.92  E-value=1.4e-24  Score=150.91  Aligned_cols=158  Identities=13%  Similarity=0.050  Sum_probs=93.1

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEE--eCCceEEEeCCCCccccchhHHHHHHHHHHHHHH
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK--LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV   98 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~--~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~   98 (198)
                      ..+|+++|.+|+|||||+++|++. ......+..+++.......  ....+.+|||||...          +..+...++
T Consensus         2 ~~ki~~vG~~~~GKSsli~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----------~~~~~~~~~   70 (166)
T 3q72_A            2 VYKVLLLGAPGVGKSALARIFGGV-EDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDG----------GRWLPGHCM   70 (166)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHCCC-----------CEEEEEEEETTEEEEEEEEECC-----------------------
T ss_pred             eEEEEEECCCCCCHHHHHHHHcCc-cccCCCCccccceEEEEEECCEEEEEEEEECCCCcc----------chhhhhhhh
Confidence            468999999999999999999987 3344445555555433322  245789999999632          122333333


Q ss_pred             hcccccceEEEEEeCCCCCCcCc-HHHHHHHHh----hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEE
Q 029158           99 STRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMM  173 (198)
Q Consensus        99 ~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~----~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  173 (198)
                      .   .+|++++|+|.++...... ..++..+..    .+.|+++|+||+|+........  +..++....   .+.++++
T Consensus        71 ~---~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~--~~~~~~~~~---~~~~~~~  142 (166)
T 3q72_A           71 A---MGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSV--DEGRACAVV---FDCKFIE  142 (166)
T ss_dssp             -----CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCH--HHHHHHHHH---TTCEEEE
T ss_pred             h---hCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCH--HHHHHHHHH---hCCcEEE
Confidence            3   3899999999986321111 223344433    3689999999999976432211  111111111   1478999


Q ss_pred             eccCCCCChHHHHHHHHHhhcccc
Q 029158          174 VSSKSGAGIRSLRTVLSKIARFAK  197 (198)
Q Consensus       174 ~Sa~~~~gi~~l~~~i~~~~~~~r  197 (198)
                      +||++|+|+++++++|.+.+...|
T Consensus       143 ~Sa~~~~gi~~l~~~l~~~~~~~r  166 (166)
T 3q72_A          143 TSAALHHNVQALFEGVVRQIRLRR  166 (166)
T ss_dssp             CBGGGTBSHHHHHHHHHHHHHHHC
T ss_pred             eccCCCCCHHHHHHHHHHHHHhcC
Confidence            999999999999999998876543

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=99.92  E-value=9.6e-25  Score=163.38  Aligned_cols=159  Identities=19%  Similarity=0.234  Sum_probs=111.4

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEe--CCceEEEeCCCCccccchhHHHHHHHHHHHHHH
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV   98 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~--~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~   98 (198)
                      .++|+++|.+|+|||||+|+|++..  ...++++++|.+......  +..+.+|||||...-.... ..   +.+.+.|+
T Consensus         3 ~~kI~lvG~~nvGKSTL~n~L~g~~--~~v~~~pg~tv~~~~~~~~~~~~l~l~DtpG~~~~~~~~-~~---e~v~~~~~   76 (272)
T 3b1v_A            3 MTEIALIGNPNSGKTSLFNLITGHN--QRVGNWPGVTVERKSGLVKKNKDLEIQDLPGIYSMSPYS-PE---AKVARDYL   76 (272)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHCCC--CCCCSSSCCCCSCEEEECTTCTTEEEEECCCCSCSSCSS-HH---HHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHCCC--CcccCCCCCcEEEEEEEEecCCeEEEEECCCcCccCCCC-hH---HHHHHHHH
Confidence            4689999999999999999999874  456777887765432222  5789999999975421111 11   23344555


Q ss_pred             hcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEeccCC
Q 029158           99 STRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKS  178 (198)
Q Consensus        99 ~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~  178 (198)
                      .. ..+|++++|+|+++  ......+..++.+.+.|+++|+||+|+............+.+.+      +++++++||++
T Consensus        77 ~~-~~~d~vi~V~D~t~--~e~~~~~~~~l~~~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~l------g~~vi~~SA~~  147 (272)
T 3b1v_A           77 LS-QRADSILNVVDATN--LERNLYLTTQLIETGIPVTIALNMIDVLDGQGKKINVDKLSYHL------GVPVVATSALK  147 (272)
T ss_dssp             HT-TCCSEEEEEEEGGG--HHHHHHHHHHHHHTCSCEEEEEECHHHHHHTTCCCCHHHHHHHH------TSCEEECBTTT
T ss_pred             hc-CCCCEEEEEecCCc--hHhHHHHHHHHHhcCCCEEEEEEChhhCCcCCcHHHHHHHHHHc------CCCEEEEEccC
Confidence            43 35899999999976  23334555666667899999999999864322111112233322      47999999999


Q ss_pred             CCChHHHHHHHHHhhc
Q 029158          179 GAGIRSLRTVLSKIAR  194 (198)
Q Consensus       179 ~~gi~~l~~~i~~~~~  194 (198)
                      |.|+++++++|.+.+.
T Consensus       148 g~gi~el~~~i~~~~~  163 (272)
T 3b1v_A          148 QTGVDQVVKKAAHTTT  163 (272)
T ss_dssp             TBSHHHHHHHHHHSCT
T ss_pred             CCCHHHHHHHHHHHHh
Confidence            9999999999988653

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=99.92  E-value=2e-24  Score=154.09  Aligned_cols=167  Identities=16%  Similarity=0.126  Sum_probs=103.0

Q ss_pred             CCcCCCCCCCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEeCCceEEEeCCCCccccchhHHHHHH
Q 029158           11 KVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAW   90 (198)
Q Consensus        11 ~~~~~~~~~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~   90 (198)
                      ...+++......+|+++|.+|+|||||++++++.. .....+..+.. ...+...+..+.+|||||....          
T Consensus        19 ~~~~~~~~~~~~ki~v~G~~~vGKSsLi~~l~~~~-~~~~~~t~~~~-~~~~~~~~~~~~i~Dt~G~~~~----------   86 (192)
T 2b6h_A           19 SLFSRIFGKKQMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFN-VETVEYKNICFTVWDVGGQDKI----------   86 (192)
T ss_dssp             CGGGGTTTTSCEEEEEEESTTSSHHHHHHHHCSSC-CEEEEEETTEE-EEEEEETTEEEEEEECC---------------
T ss_pred             HHHHHhccCCccEEEEECCCCCCHHHHHHHHHhCC-ccccCCcCcee-EEEEEECCEEEEEEECCCCHhH----------
Confidence            33444556678899999999999999999999874 22211111110 1112224678999999996321          


Q ss_pred             HHHHHHHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHh----hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhcc
Q 029158           91 EELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANN  165 (198)
Q Consensus        91 ~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~----~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~  165 (198)
                      ......++.   .+|++++|+|+++...-.. ..++..+..    .+.|+++|+||+|+......++....+..  ....
T Consensus        87 ~~~~~~~~~---~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~--~~~~  161 (192)
T 2b6h_A           87 RPLWRHYFQ---NTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGL--QHLR  161 (192)
T ss_dssp             CTTHHHHHH---TCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTG--GGCS
T ss_pred             HHHHHHHhc---cCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCCCHHHHHHHhCc--cccc
Confidence            222333343   3899999999986421111 223333322    27899999999999875433332222211  1111


Q ss_pred             CCCCCcEEeccCCCCChHHHHHHHHHhhc
Q 029158          166 SLVQPVMMVSSKSGAGIRSLRTVLSKIAR  194 (198)
Q Consensus       166 ~~~~~v~~~Sa~~~~gi~~l~~~i~~~~~  194 (198)
                      ....+++++||++|.|+++++++|.+.+.
T Consensus       162 ~~~~~~~~~SA~~g~gi~~l~~~l~~~i~  190 (192)
T 2b6h_A          162 SRTWYVQATCATQGTGLYDGLDWLSHELS  190 (192)
T ss_dssp             SCCEEEEECBTTTTBTHHHHHHHHHHHTT
T ss_pred             CCceEEEECcCCCcCCHHHHHHHHHHHHh
Confidence            23467999999999999999999988764

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.91  E-value=6.6e-24  Score=167.61  Aligned_cols=164  Identities=22%  Similarity=0.295  Sum_probs=110.6

Q ss_pred             CCCCCeEEEEcCCCCCHHHHHHHHhcCcc-ceeecCCCCceeEEEEEE--------------------------eCCceE
Q 029158           18 APDLPEIAFAGRSNVGKSSMLNALTRQWG-VVRTSDKPGLTQTINFFK--------------------------LGTKLC   70 (198)
Q Consensus        18 ~~~~~~v~~vG~~~~GKSsli~~l~~~~~-~~~~~~~~~~t~~~~~~~--------------------------~~~~~~   70 (198)
                      .....+|+++|.+++|||||+++|++... .......++.|.+..+..                          ....+.
T Consensus         5 r~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~   84 (408)
T 1s0u_A            5 SQAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVS   84 (408)
T ss_dssp             CCCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEE
T ss_pred             cCCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEE
Confidence            34568999999999999999999996521 111122244454432211                          015699


Q ss_pred             EEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCC-CcCcHHHHHHHHhhC-CcEEEEEeccCCCCcH
Q 029158           71 LVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGV-KPRDHELISLMERSQ-TKYQVVLTKTDTVFPI  148 (198)
Q Consensus        71 iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~-~~~~~~~~~~~~~~~-~p~iiv~nK~Dl~~~~  148 (198)
                      +|||||+             ..+...++.....+|++++|+|++++. .....+.+..+...+ .|+++|+||+|+.+..
T Consensus        85 iiDtPGh-------------~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l~~~~iivv~NK~Dl~~~~  151 (408)
T 1s0u_A           85 FVDSPGH-------------ETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEILGIDKIIIVQNKIDLVDEK  151 (408)
T ss_dssp             EEECSSH-------------HHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTTCCCEEEEEECTTSSCTT
T ss_pred             EEECCCH-------------HHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHcCCCeEEEEEEccCCCCHH
Confidence            9999996             455667888888899999999999876 555566666666555 4799999999998765


Q ss_pred             HHHHHHHHHHHHHHhccCCCCCcEEeccCCCCChHHHHHHHHHhhc
Q 029158          149 DVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR  194 (198)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~~~gi~~l~~~i~~~~~  194 (198)
                      ......+++++.+........+++++||++|+|+++|+++|.+.+.
T Consensus       152 ~~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~  197 (408)
T 1s0u_A          152 QAEENYEQIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIP  197 (408)
T ss_dssp             TTTTHHHHHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence            4333445555555443344689999999999999999999998664

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=99.91  E-value=9.3e-24  Score=151.00  Aligned_cols=167  Identities=13%  Similarity=0.075  Sum_probs=101.6

Q ss_pred             CCCCCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEE---EeCCceEEEeCCCCccccchhHHHHHHHH
Q 029158           16 FPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF---KLGTKLCLVDLPGYGFAYAKEEVKDAWEE   92 (198)
Q Consensus        16 ~~~~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~---~~~~~~~iiDtpG~~~~~~~~~~~~~~~~   92 (198)
                      .++....+|+++|.+|+|||||++.+.+............++......   .....+.+|||||...-....     |. 
T Consensus        15 ~~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~-----~~-   88 (196)
T 3llu_A           15 YFQGSKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPT-----FD-   88 (196)
T ss_dssp             -----CCEEEEEESTTSSHHHHHHHHHSCCCGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTT-----CC-
T ss_pred             cccCcceEEEEECCCCCCHHHHHHHHHhcCCCcceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhh-----hh-
Confidence            455678899999999999999999988862111111111122222221   234789999999964311000     00 


Q ss_pred             HHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHh-----hCCcEEEEEeccCCCCcHHH----HHHHHHHHHHHHh
Q 029158           93 LVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMER-----SQTKYQVVLTKTDTVFPIDV----ARRAMQIEESLKA  163 (198)
Q Consensus        93 ~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~-----~~~p~iiv~nK~Dl~~~~~~----~~~~~~~~~~~~~  163 (198)
                       ...++..   +|++++|+|+++........+..++..     .+.|+++|+||+|+......    ........+.+..
T Consensus        89 -~~~~~~~---~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~  164 (196)
T 3llu_A           89 -YEMIFRG---TGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLAD  164 (196)
T ss_dssp             -HHHHHHT---CSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -ccccccc---CCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHH
Confidence             0234443   899999999987532333344444433     27899999999999875432    2222222333333


Q ss_pred             cc--CCCCCcEEeccCCCCChHHHHHHHHHhh
Q 029158          164 NN--SLVQPVMMVSSKSGAGIRSLRTVLSKIA  193 (198)
Q Consensus       164 ~~--~~~~~v~~~Sa~~~~gi~~l~~~i~~~~  193 (198)
                      ..  ....+++++||++ +|++++++.|.+.+
T Consensus       165 ~~~~~~~~~~~e~Sa~~-~~v~~~f~~l~~~l  195 (196)
T 3llu_A          165 AGLEKLHLSFYLTSIYD-HSIFEAFSKVVQKL  195 (196)
T ss_dssp             TTCTTSCEEEEEECTTS-THHHHHHHHHHHHT
T ss_pred             hhhhcCCcceEEEEech-hhHHHHHHHHHHHh
Confidence            21  3357899999999 99999999998754

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.91  E-value=2.8e-24  Score=152.53  Aligned_cols=160  Identities=14%  Similarity=0.113  Sum_probs=103.4

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHHHH
Q 029158           19 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV   98 (198)
Q Consensus        19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~   98 (198)
                      ....+|+++|.+|+|||||+++|++.... ...+..+.+. ..+...+..+.+|||||....          ......++
T Consensus        14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~-~~~~~~~~~~~i~Dt~G~~~~----------~~~~~~~~   81 (187)
T 1zj6_A           14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSNV-EEIVINNTRFLMWDIGGQESL----------RSSWNTYY   81 (187)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCSSC-EEEEETTEEEEEEECCC--------------CGGGHHHH
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCccce-EEEEECCEEEEEEECCCCHhH----------HHHHHHHh
Confidence            45689999999999999999999977432 3333322221 122234678999999996321          12223344


Q ss_pred             hcccccceEEEEEeCCCCCCcCc-HHHHHHHHh----hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEE
Q 029158           99 STRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMM  173 (198)
Q Consensus        99 ~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~----~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  173 (198)
                      .   .+|++++|+|+++...-.. ..++..+..    .+.|+++|+||+|+......++..+.+...  .....+.++++
T Consensus        82 ~---~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~--~~~~~~~~~~~  156 (187)
T 1zj6_A           82 T---NTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLT--SIKDHQWHIQA  156 (187)
T ss_dssp             T---TCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGG--GCCSSCEEEEE
T ss_pred             c---CCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCCCCHHHHHHHhChh--hhcCCCcEEEE
Confidence            3   3899999999987422221 233333332    479999999999998654333322222111  12233568999


Q ss_pred             eccCCCCChHHHHHHHHHhhcc
Q 029158          174 VSSKSGAGIRSLRTVLSKIARF  195 (198)
Q Consensus       174 ~Sa~~~~gi~~l~~~i~~~~~~  195 (198)
                      +||++|+|+++++++|.+.+..
T Consensus       157 ~Sa~~g~gi~~l~~~l~~~~~~  178 (187)
T 1zj6_A          157 CCALTGEGLCQGLEWMMSRLKI  178 (187)
T ss_dssp             CBTTTTBTHHHHHHHHHHHHCC
T ss_pred             ccCCCCcCHHHHHHHHHHHHHH
Confidence            9999999999999999987653

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=99.91  E-value=2.6e-24  Score=172.06  Aligned_cols=156  Identities=24%  Similarity=0.254  Sum_probs=92.3

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE---EEEeCCceEEEeCCCCccccchhHHHHHHHH-HHHHH
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEE-LVKEY   97 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~---~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~-~~~~~   97 (198)
                      .+|+++|.+|+|||||+|+|++. ....+.+.+++|.+..   +...+..+.+|||||+.+..      ..++. .+...
T Consensus       234 ~kV~ivG~~nvGKSSLln~L~~~-~~a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~------~~ve~~gi~~~  306 (476)
T 3gee_A          234 VSTVIAGKPNAGKSTLLNTLLGQ-ERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAG------EEIEHEGIRRS  306 (476)
T ss_dssp             EEEEEECCTTSSHHHHHHHCC-------------------CEEEEETTEEEEEEC-------------------------
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC-CCcccCCCCCceEEEEEEEEEECCeEEEEEECCCCCcch------hHHHHHHHHHH
Confidence            57999999999999999999997 4566788888888753   33346789999999985421      11111 12334


Q ss_pred             HhcccccceEEEEEeCCCCCCcC----cHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEE
Q 029158           98 VSTRVSLKRVCLLIDTKWGVKPR----DHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMM  173 (198)
Q Consensus        98 ~~~~~~~d~vi~v~d~~~~~~~~----~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  173 (198)
                      ......+|++++|+|++++....    ..++++.+.  +.|+++|+||+|+........  +.+.+.      ...++++
T Consensus       307 ~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~--~~piIvV~NK~Dl~~~~~~~~--~~l~~~------~~~~~i~  376 (476)
T 3gee_A          307 RMKMAEADLILYLLDLGTERLDDELTEIRELKAAHP--AAKFLTVANKLDRAANADALI--RAIADG------TGTEVIG  376 (476)
T ss_dssp             -CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCT--TSEEEEEEECTTSCTTTHHHH--HHHHHH------HTSCEEE
T ss_pred             HhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhcC--CCCEEEEEECcCCCCccchhH--HHHHhc------CCCceEE
Confidence            45566799999999999866552    333444333  699999999999987654422  222222      1268999


Q ss_pred             eccCCCCChHHHHHHHHHhhc
Q 029158          174 VSSKSGAGIRSLRTVLSKIAR  194 (198)
Q Consensus       174 ~Sa~~~~gi~~l~~~i~~~~~  194 (198)
                      +||++|+|+++++++|.+.+.
T Consensus       377 vSAktg~GI~eL~~~i~~~~~  397 (476)
T 3gee_A          377 ISALNGDGIDTLKQHMGDLVK  397 (476)
T ss_dssp             CBTTTTBSHHHHHHHHTHHHH
T ss_pred             EEECCCCCHHHHHHHHHHHHh
Confidence            999999999999999988775

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=99.91  E-value=3.8e-23  Score=164.44  Aligned_cols=158  Identities=18%  Similarity=0.203  Sum_probs=110.2

Q ss_pred             CCCCCCeEEEEcCCCCCHHHHHHHHhcCccc-----------------------------eeecCCCCceeEEEEE---E
Q 029158           17 PAPDLPEIAFAGRSNVGKSSMLNALTRQWGV-----------------------------VRTSDKPGLTQTINFF---K   64 (198)
Q Consensus        17 ~~~~~~~v~~vG~~~~GKSsli~~l~~~~~~-----------------------------~~~~~~~~~t~~~~~~---~   64 (198)
                      +.....+|+++|.+++|||||+++|++....                             ......+++|.+....   .
T Consensus        13 ~~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~   92 (439)
T 3j2k_7           13 PKKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFET   92 (439)
T ss_pred             CCCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEec
Confidence            3456689999999999999999999654100                             0011124566665432   2


Q ss_pred             eCCceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC-------cCcHHHHHHHHhhCCc-EE
Q 029158           65 LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVK-------PRDHELISLMERSQTK-YQ  136 (198)
Q Consensus        65 ~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~-------~~~~~~~~~~~~~~~p-~i  136 (198)
                      .+..+.+|||||+             ..+...+......+|++++|+|++.+..       ....+.+..+...++| ++
T Consensus        93 ~~~~~~iiDTPGh-------------~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iI  159 (439)
T 3j2k_7           93 EKKHFTILDAPGH-------------KSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLI  159 (439)
T ss_pred             CCeEEEEEECCCh-------------HHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEE
Confidence            3678999999997             4445556666667999999999998764       4567777777777888 99


Q ss_pred             EEEeccCCCCcH----HHHHHHHHHHHHHHhccC---CCCCcEEeccCCCCChHHHHH
Q 029158          137 VVLTKTDTVFPI----DVARRAMQIEESLKANNS---LVQPVMMVSSKSGAGIRSLRT  187 (198)
Q Consensus       137 iv~nK~Dl~~~~----~~~~~~~~~~~~~~~~~~---~~~~v~~~Sa~~~~gi~~l~~  187 (198)
                      +|+||+|+....    ..++..+.+.+.+.....   ...+++++||++|+|++++.+
T Consensus       160 vviNK~Dl~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~  217 (439)
T 3j2k_7          160 VLINKMDDPTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD  217 (439)
T ss_pred             EEeecCCCcccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence            999999997532    233344444444433221   246899999999999999544

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=99.91  E-value=1.5e-23  Score=147.22  Aligned_cols=158  Identities=11%  Similarity=0.017  Sum_probs=97.8

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEeC---CceEEEeCCCCccccchhHHHHHHHHHHH
Q 029158           19 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLG---TKLCLVDLPGYGFAYAKEEVKDAWEELVK   95 (198)
Q Consensus        19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~---~~~~iiDtpG~~~~~~~~~~~~~~~~~~~   95 (198)
                      ....+|+++|.+|+|||||++++++........+..+.+........+   ..+.+|||||....          .....
T Consensus         5 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----------~~~~~   74 (177)
T 1wms_A            5 SSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERF----------RSLRT   74 (177)
T ss_dssp             EEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGG----------HHHHG
T ss_pred             cceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhh----------hhhHH
Confidence            346789999999999999999999873211111121111111122222   47999999996321          22222


Q ss_pred             HHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHh-------hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCC
Q 029158           96 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER-------SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSL  167 (198)
Q Consensus        96 ~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~-------~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~  167 (198)
                      .   ....+|++++|+|+.+...... ..++..+..       .+.|+++|+||+|+.......   +..++....  ..
T Consensus        75 ~---~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~---~~~~~~~~~--~~  146 (177)
T 1wms_A           75 P---FYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVST---EEAQAWCRD--NG  146 (177)
T ss_dssp             G---GGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCH---HHHHHHHHH--TT
T ss_pred             H---HHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccccCH---HHHHHHHHh--cC
Confidence            2   2344899999999986322222 233443332       467999999999997322111   112222111  22


Q ss_pred             CCCcEEeccCCCCChHHHHHHHHHhhc
Q 029158          168 VQPVMMVSSKSGAGIRSLRTVLSKIAR  194 (198)
Q Consensus       168 ~~~v~~~Sa~~~~gi~~l~~~i~~~~~  194 (198)
                      ..+++++||++|.|+++++++|.+.+.
T Consensus       147 ~~~~~~~Sa~~~~gi~~l~~~l~~~~~  173 (177)
T 1wms_A          147 DYPYFETSAKDATNVAAAFEEAVRRVL  173 (177)
T ss_dssp             CCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             CceEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            578999999999999999999988753

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=99.91  E-value=9.8e-24  Score=150.23  Aligned_cols=157  Identities=15%  Similarity=0.088  Sum_probs=98.0

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEe---CCceEEEeCCCCccccchhHHHHHHHHHHH
Q 029158           19 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVK   95 (198)
Q Consensus        19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~   95 (198)
                      ....+|+++|.+|+|||||+++|++...........+.+........   ...+.+|||||....          .....
T Consensus        19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----------~~~~~   88 (191)
T 2a5j_A           19 SYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESF----------RSITR   88 (191)
T ss_dssp             CEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGT----------SCCCH
T ss_pred             CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhh----------hhhHH
Confidence            44579999999999999999999987421111111222222222222   247899999995321          11122


Q ss_pred             HHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHhh---CCcEEEEEeccCCCCcHHH-HHHHHHHHHHHHhccCCCCC
Q 029158           96 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS---QTKYQVVLTKTDTVFPIDV-ARRAMQIEESLKANNSLVQP  170 (198)
Q Consensus        96 ~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~~---~~p~iiv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~  170 (198)
                      .++.   .+|++++|+|+++...... ..++..+...   +.|+++|+||+|+...... .+....+.+.      .+.+
T Consensus        89 ~~~~---~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~------~~~~  159 (191)
T 2a5j_A           89 SYYR---GAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFARE------HGLI  159 (191)
T ss_dssp             HHHT---TCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHH------HTCE
T ss_pred             HHhc---cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccCHHHHHHHHHH------cCCE
Confidence            3333   3899999999986322222 2344455432   6899999999999753221 1111122111      1468


Q ss_pred             cEEeccCCCCChHHHHHHHHHhhc
Q 029158          171 VMMVSSKSGAGIRSLRTVLSKIAR  194 (198)
Q Consensus       171 v~~~Sa~~~~gi~~l~~~i~~~~~  194 (198)
                      ++++||++++|+++++++|.+.+.
T Consensus       160 ~~~~Sa~~~~gi~~l~~~l~~~i~  183 (191)
T 2a5j_A          160 FMETSAKTACNVEEAFINTAKEIY  183 (191)
T ss_dssp             EEEECTTTCTTHHHHHHHHHHHHH
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHHH
Confidence            999999999999999999987653

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=99.91  E-value=8.2e-24  Score=150.81  Aligned_cols=158  Identities=16%  Similarity=0.136  Sum_probs=97.6

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEe---CCceEEEeCCCCccccchhHHHHHHHHHHHH
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE   96 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~   96 (198)
                      ...+|+++|.+|+|||||+++|++........+..+.+........   ...+.+|||||....          ......
T Consensus        25 ~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~----------~~~~~~   94 (192)
T 2il1_A           25 FKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERF----------NSITSA   94 (192)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGG----------HHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHH----------HHHHHH
Confidence            4568999999999999999999987421111222222222222222   247899999996321          222333


Q ss_pred             HHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHh---hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcE
Q 029158           97 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVM  172 (198)
Q Consensus        97 ~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~---~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~  172 (198)
                      ++..   +|++++|+|+++...... ..++..+..   .+.|+++|+||+|+.......  .+..++.....  ...+++
T Consensus        95 ~~~~---~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~--~~~~~~~~~~~--~~~~~~  167 (192)
T 2il1_A           95 YYRS---AKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREIT--RQQGEKFAQQI--TGMRFC  167 (192)
T ss_dssp             HHHH---CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSC--HHHHHHHHHTS--TTCEEE
T ss_pred             HhcC---CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccC--HHHHHHHHHhc--CCCeEE
Confidence            4433   899999999987432222 233444443   368999999999997543211  11122222211  247899


Q ss_pred             EeccCCCCChHHHHHHHHHhhc
Q 029158          173 MVSSKSGAGIRSLRTVLSKIAR  194 (198)
Q Consensus       173 ~~Sa~~~~gi~~l~~~i~~~~~  194 (198)
                      ++||++|+|+++++++|.+.+.
T Consensus       168 ~~SA~~g~gi~~l~~~l~~~i~  189 (192)
T 2il1_A          168 EASAKDNFNVDEIFLKLVDDIL  189 (192)
T ss_dssp             ECBTTTTBSHHHHHHHHHHHHH
T ss_pred             EEeCCCCCCHHHHHHHHHHHHH
Confidence            9999999999999999987653

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=99.91  E-value=7.3e-24  Score=160.98  Aligned_cols=163  Identities=20%  Similarity=0.231  Sum_probs=113.4

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE---EEEeCCceEEEeCCCCc-cccchhHHHHHHHHHHH
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYG-FAYAKEEVKDAWEELVK   95 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~---~~~~~~~~~iiDtpG~~-~~~~~~~~~~~~~~~~~   95 (198)
                      ....|+++|++|+|||||+|+|++. .+...++.+++|+...   +...+.++.++||||+. ...     ......+..
T Consensus         7 r~~~VaIvG~~nvGKSTLln~L~g~-~~~i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~-----~~l~~~~~~   80 (301)
T 1ega_A            7 YCGFIAIVGRPNVGKSTLLNKLLGQ-KISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEK-----RAINRLMNK   80 (301)
T ss_dssp             EEEEEEEECSSSSSHHHHHHHHHTC-SEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHH-----HHHHHHHTC
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHCC-CccccCCCCCcceeeEEEEEEECCeeEEEEECcCCCccch-----hhHHHHHHH
Confidence            3457999999999999999999998 5555666777775422   22336789999999974 110     000011222


Q ss_pred             HHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCC-cHHHHHHHHHHHHHHHhccCCCCCcEEe
Q 029158           96 EYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF-PIDVARRAMQIEESLKANNSLVQPVMMV  174 (198)
Q Consensus        96 ~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~  174 (198)
                      ........+|++++|+|++. +...+..+++.+...+.|+++|+||+|+.. ..........+.+    ..+ ..+++++
T Consensus        81 ~~~~~l~~~D~vl~Vvd~~~-~~~~~~~i~~~l~~~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~----~~~-~~~~i~i  154 (301)
T 1ega_A           81 AASSSIGDVELVIFVVEGTR-WTPDDEMVLNKLREGKAPVILAVNKVDNVQEKADLLPHLQFLAS----QMN-FLDIVPI  154 (301)
T ss_dssp             CTTSCCCCEEEEEEEEETTC-CCHHHHHHHHHHHSSSSCEEEEEESTTTCCCHHHHHHHHHHHHT----TSC-CSEEEEC
T ss_pred             HHHHHHhcCCEEEEEEeCCC-CCHHHHHHHHHHHhcCCCEEEEEECcccCccHHHHHHHHHHHHH----hcC-cCceEEE
Confidence            22344567999999999987 666666677777766899999999999987 3322222222221    111 2368999


Q ss_pred             ccCCCCChHHHHHHHHHhhc
Q 029158          175 SSKSGAGIRSLRTVLSKIAR  194 (198)
Q Consensus       175 Sa~~~~gi~~l~~~i~~~~~  194 (198)
                      ||+++.|++++++++.+.++
T Consensus       155 SA~~g~~v~~l~~~i~~~l~  174 (301)
T 1ega_A          155 SAETGLNVDTIAAIVRKHLP  174 (301)
T ss_dssp             CTTTTTTHHHHHHHHHTTCC
T ss_pred             ECCCCCCHHHHHHHHHHhCC
Confidence            99999999999999987654

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=99.91  E-value=3.2e-24  Score=160.84  Aligned_cols=159  Identities=23%  Similarity=0.306  Sum_probs=111.5

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE---EEEeCCceEEEeCCCCccccchhHHHHHHHHHHHHH
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY   97 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~---~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~   97 (198)
                      .++|+++|++|+|||||+++|++..  ...++.+++|.+..   +...+..+.+|||||+.+-..... .   ....+.|
T Consensus         3 ~~~i~lvG~~g~GKTTL~n~l~g~~--~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~-~---~~~~~~~   76 (271)
T 3k53_A            3 LKTVALVGNPNVGKTTIFNALTGLR--QHVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAHSI-D---ELIARNF   76 (271)
T ss_dssp             CEEEEEEECSSSSHHHHHHHHHTTC--EEEEECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCSSCH-H---HHHHHHH
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCC--cccCCCCCeEEEeeEEEEEECCceEEEEeCCCccccccCCH-H---HHHHHHh
Confidence            4689999999999999999999984  36677787776654   222356799999999754221111 1   1223333


Q ss_pred             HhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhC-CcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEecc
Q 029158           98 VSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQ-TKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSS  176 (198)
Q Consensus        98 ~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~-~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa  176 (198)
                      +. ...+|++++|+|+++.  .....++..+...+ .|+++|+||+|+............+.+.+      +.+++++||
T Consensus        77 ~~-~~~~d~vi~v~D~~~~--~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~l------g~~~~~~Sa  147 (271)
T 3k53_A           77 IL-DGNADVIVDIVDSTCL--MRNLFLTLELFEMEVKNIILVLNKFDLLKKKGAKIDIKKMRKEL------GVPVIPTNA  147 (271)
T ss_dssp             HH-TTCCSEEEEEEEGGGH--HHHHHHHHHHHHTTCCSEEEEEECHHHHHHHTCCCCHHHHHHHH------SSCEEECBG
T ss_pred             hh-ccCCcEEEEEecCCcc--hhhHHHHHHHHhcCCCCEEEEEEChhcCcccccHHHHHHHHHHc------CCcEEEEEe
Confidence            32 3458999999999863  33445555555666 99999999999864332221223333333      489999999


Q ss_pred             CCCCChHHHHHHHHHhhc
Q 029158          177 KSGAGIRSLRTVLSKIAR  194 (198)
Q Consensus       177 ~~~~gi~~l~~~i~~~~~  194 (198)
                      ++|.|++++++++.+.+.
T Consensus       148 ~~g~gi~~l~~~i~~~~~  165 (271)
T 3k53_A          148 KKGEGVEELKRMIALMAE  165 (271)
T ss_dssp             GGTBTHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHh
Confidence            999999999999988764

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.91  E-value=5.6e-24  Score=170.22  Aligned_cols=163  Identities=18%  Similarity=0.280  Sum_probs=103.9

Q ss_pred             CCCCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEe---CCceEEEeCCCCccccchhHHHHHHHHH
Q 029158           17 PAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEEL   93 (198)
Q Consensus        17 ~~~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~~~iiDtpG~~~~~~~~~~~~~~~~~   93 (198)
                      +....++|+++|.+|+|||||+|+|++. ....+.+.+++|.+......   +..+.+|||||+...  .+...+.+...
T Consensus        19 ~~m~~~~V~lvG~~nvGKSTL~n~l~~~-~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~--~~~~~~~~~~~   95 (456)
T 4dcu_A           19 SHMGKPVVAIVGRPNVGKSTIFNRIAGE-RISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIG--DEPFLAQIRQQ   95 (456)
T ss_dssp             ----CCEEEEECSSSSSHHHHHHHHEEE-EEC-----------CEEEECTTCSSCCEEECCCC--------CCHHHHHHH
T ss_pred             hhcCCCEEEEECCCCCcHHHHHHHHhCC-CCcccCCCCCcceeEEEEEEEECCceEEEEECCCCCCc--chHHHHHHHHH
Confidence            3344689999999999999999999997 45567778888887665443   578999999997532  11122333333


Q ss_pred             HHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEE
Q 029158           94 VKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMM  173 (198)
Q Consensus        94 ~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  173 (198)
                      ...++..   +|++++|+|+..++...+.++.+.+...++|+++|+||+|+.....      ...+.. .  ......++
T Consensus        96 ~~~~~~~---ad~il~VvD~~~~~~~~d~~l~~~l~~~~~pvilV~NK~D~~~~~~------~~~e~~-~--lg~~~~~~  163 (456)
T 4dcu_A           96 AEIAMDE---ADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTEMRA------NIYDFY-S--LGFGEPYP  163 (456)
T ss_dssp             HHHHHHH---CSEEEEEEESSSCSCHHHHHHHHHHTTCCSCEEEEEECC---------------CCSG-G--GSSSSEEE
T ss_pred             HHhhHhh---CCEEEEEEeCCCCCChHHHHHHHHHHHcCCCEEEEEECccchhhhh------hHHHHH-H--cCCCceEE
Confidence            3334433   8999999999998888888888988888999999999999864321      111111 1  11235689


Q ss_pred             eccCCCCChHHHHHHHHHhhc
Q 029158          174 VSSKSGAGIRSLRTVLSKIAR  194 (198)
Q Consensus       174 ~Sa~~~~gi~~l~~~i~~~~~  194 (198)
                      +||++|.|++++++++.+.+.
T Consensus       164 iSA~~g~gv~~L~~~i~~~l~  184 (456)
T 4dcu_A          164 ISGTHGLGLGDLLDAVAEHFK  184 (456)
T ss_dssp             CCTTTCTTHHHHHHHHHTTGG
T ss_pred             eecccccchHHHHHHHHhhcc
Confidence            999999999999999988765

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.91  E-value=1.7e-23  Score=145.97  Aligned_cols=157  Identities=15%  Similarity=0.023  Sum_probs=98.4

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEE--eCCceEEEeCCCCccccchhHHHHHHHHHHHHHH
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK--LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV   98 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~--~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~   98 (198)
                      ..+|+++|.+|+|||||+++|++........+..+.+.......  ....+.+|||||....          ..+...++
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~----------~~~~~~~~   72 (172)
T 2erx_A            3 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQF----------PAMQRLSI   72 (172)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSC----------HHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEECCCchhh----------HHHHHHhc
Confidence            46899999999999999999998731111111111111111111  1246899999997432          22233333


Q ss_pred             hcccccceEEEEEeCCCCCC-cCcHHHHHHHHh-----hCCcEEEEEeccCCCCcHHHHH-HHHHHHHHHHhccCCCCCc
Q 029158           99 STRVSLKRVCLLIDTKWGVK-PRDHELISLMER-----SQTKYQVVLTKTDTVFPIDVAR-RAMQIEESLKANNSLVQPV  171 (198)
Q Consensus        99 ~~~~~~d~vi~v~d~~~~~~-~~~~~~~~~~~~-----~~~p~iiv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~~~v  171 (198)
                      ..   +|++++|+|+++... .....++..+..     .+.|+++|+||+|+....+... ....+....      +.++
T Consensus        73 ~~---~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~------~~~~  143 (172)
T 2erx_A           73 SK---GHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTW------KCAF  143 (172)
T ss_dssp             HH---CSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHH------TCEE
T ss_pred             cc---CCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHHHh------CCeE
Confidence            33   899999999986322 122334444443     2689999999999975432211 111111111      3689


Q ss_pred             EEeccCCCCChHHHHHHHHHhhccc
Q 029158          172 MMVSSKSGAGIRSLRTVLSKIARFA  196 (198)
Q Consensus       172 ~~~Sa~~~~gi~~l~~~i~~~~~~~  196 (198)
                      +++||++|.|+++++++|.+.+...
T Consensus       144 ~~~Sa~~~~gi~~l~~~l~~~~~~~  168 (172)
T 2erx_A          144 METSAKLNHNVKELFQELLNLEKRR  168 (172)
T ss_dssp             EECBTTTTBSHHHHHHHHHHTCCSS
T ss_pred             EEecCCCCcCHHHHHHHHHHHHhhh
Confidence            9999999999999999999877643

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=99.91  E-value=1.5e-23  Score=147.33  Aligned_cols=158  Identities=15%  Similarity=0.112  Sum_probs=100.8

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEe---CCceEEEeCCCCccccchhHHHHHHHHHHH
Q 029158           19 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVK   95 (198)
Q Consensus        19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~   95 (198)
                      +...+|+++|.+|+|||||+++|++........+..+.+........   ...+.+|||||....          .....
T Consensus        13 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~----------~~~~~   82 (179)
T 1z0f_A           13 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERF----------RAVTR   82 (179)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGT----------CHHHH
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHh----------hhhHH
Confidence            34679999999999999999999987422212222222222222222   357899999995321          22233


Q ss_pred             HHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHh---hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCc
Q 029158           96 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPV  171 (198)
Q Consensus        96 ~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~---~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v  171 (198)
                      .++..   +|++++|+|+++...... ..++..+..   .+.|+++|+||+|+.......  .+..++....   .+.++
T Consensus        83 ~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~--~~~~~~~~~~---~~~~~  154 (179)
T 1z0f_A           83 SYYRG---AAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVT--YEEAKQFAEE---NGLLF  154 (179)
T ss_dssp             HHHHT---CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSC--HHHHHHHHHH---TTCEE
T ss_pred             HHhcc---CCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccC--HHHHHHHHHH---cCCEE
Confidence            34433   899999999987422222 234444443   468999999999996532211  1122222221   24789


Q ss_pred             EEeccCCCCChHHHHHHHHHhhc
Q 029158          172 MMVSSKSGAGIRSLRTVLSKIAR  194 (198)
Q Consensus       172 ~~~Sa~~~~gi~~l~~~i~~~~~  194 (198)
                      +++||++++|+++++++|.+.+.
T Consensus       155 ~~~Sa~~~~gi~~l~~~l~~~i~  177 (179)
T 1z0f_A          155 LEASAKTGENVEDAFLEAAKKIY  177 (179)
T ss_dssp             EECCTTTCTTHHHHHHHHHHHHC
T ss_pred             EEEeCCCCCCHHHHHHHHHHHHh
Confidence            99999999999999999987653

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=99.91  E-value=5e-24  Score=151.17  Aligned_cols=161  Identities=27%  Similarity=0.298  Sum_probs=108.6

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE---EEEeCCceEEEeCCCCccccchhHHHHHHHHHHHH
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE   96 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~---~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~   96 (198)
                      ..++|+++|++|+|||||+++|++..  .....++++|.+..   +...+..+.+|||||.........    ...+...
T Consensus         6 ~~~~i~lvG~~gvGKStL~~~l~~~~--~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~----~~~~~~~   79 (188)
T 2wjg_A            6 KSYEIALIGNPNVGKSTIFNALTGEN--VYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSI----DEIIARD   79 (188)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHTTC--EEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSCCSSSSH----HHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC--ccccCCCCeeccceEEEEEeCCcEEEEEECCCcCccccccH----HHHHHHH
Confidence            45789999999999999999999874  34555666665533   222367899999999754321111    1222333


Q ss_pred             HHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEecc
Q 029158           97 YVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSS  176 (198)
Q Consensus        97 ~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa  176 (198)
                      ++.. ..+|++++|+|+++  ......++..+...+.|+++|+||+|+............+.+.+      +.+++++||
T Consensus        80 ~~~~-~~~~~~i~v~d~~~--~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~------~~~~~~~Sa  150 (188)
T 2wjg_A           80 YIIN-EKPDLVVNIVDATA--LERNLYLTLQLMEMGANLLLALNKMDLAKSLGIEIDVDKLEKIL------GVKVVPLSA  150 (188)
T ss_dssp             HHHH-HCCSEEEEEEEGGG--HHHHHHHHHHHHTTTCCEEEEEECHHHHHHTTCCCCHHHHHHHH------TSCEEECBG
T ss_pred             HHhc-cCCCEEEEEecchh--HHHHHHHHHHHHhcCCCEEEEEEhhhccccccchHHHHHHHHHh------CCCeEEEEe
Confidence            4332 23789999999975  22334455666666899999999999864322111122222222      368999999


Q ss_pred             CCCCChHHHHHHHHHhhcc
Q 029158          177 KSGAGIRSLRTVLSKIARF  195 (198)
Q Consensus       177 ~~~~gi~~l~~~i~~~~~~  195 (198)
                      ++++|+++++++|.+.+..
T Consensus       151 ~~~~~v~~l~~~i~~~~~~  169 (188)
T 2wjg_A          151 AKKMGIEELKKAISIAVKD  169 (188)
T ss_dssp             GGTBSHHHHHHHHHHHHTT
T ss_pred             cCCCCHHHHHHHHHHHHHh
Confidence            9999999999999887653

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=99.91  E-value=2.5e-23  Score=149.06  Aligned_cols=163  Identities=21%  Similarity=0.159  Sum_probs=96.4

Q ss_pred             CCCCCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEE---eCCceEEEeCCCCccccchhHHHHHHHH
Q 029158           16 FPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEE   92 (198)
Q Consensus        16 ~~~~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~iiDtpG~~~~~~~~~~~~~~~~   92 (198)
                      .+.....+|+++|.+|+|||||+++|++........+..+.+.......   ....+.+|||||....          ..
T Consensus        23 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~----------~~   92 (199)
T 2p5s_A           23 FSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERF----------RS   92 (199)
T ss_dssp             -----CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTC----------HH
T ss_pred             cCcCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcch----------hh
Confidence            3445678999999999999999999998742222222222222222122   2356999999996432          22


Q ss_pred             HHHHHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHhh---CCcEEEEEeccCCCCcHHHH---HH-HHHHHHHHHhc
Q 029158           93 LVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS---QTKYQVVLTKTDTVFPIDVA---RR-AMQIEESLKAN  164 (198)
Q Consensus        93 ~~~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~~---~~p~iiv~nK~Dl~~~~~~~---~~-~~~~~~~~~~~  164 (198)
                      ....++..   +|++++|+|+++...... ..++..+...   +.|+++|+||+|+......+   .. .+..++.....
T Consensus        93 ~~~~~~~~---~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~  169 (199)
T 2p5s_A           93 IAKSYFRK---ADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTY  169 (199)
T ss_dssp             HHHHHHHH---CSEEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHH
T ss_pred             hHHHHHhh---CCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHc
Confidence            23333333   899999999986332222 2344444432   68999999999996321100   00 01111111111


Q ss_pred             cCCCCCcEEeccCCCCChHHHHHHHHHhhc
Q 029158          165 NSLVQPVMMVSSKSGAGIRSLRTVLSKIAR  194 (198)
Q Consensus       165 ~~~~~~v~~~Sa~~~~gi~~l~~~i~~~~~  194 (198)
                         +.+++++||++|+|+++++++|.+.+.
T Consensus       170 ---~~~~~~~SA~~g~gv~el~~~l~~~i~  196 (199)
T 2p5s_A          170 ---GALFCETSAKDGSNIVEAVLHLAREVK  196 (199)
T ss_dssp             ---TCEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred             ---CCeEEEeeCCCCCCHHHHHHHHHHHHH
Confidence               468999999999999999999988764

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=99.91  E-value=9e-24  Score=147.97  Aligned_cols=158  Identities=13%  Similarity=0.037  Sum_probs=95.5

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEe---CCceEEEeCCCCccccchhHHHHHHHHHHHH
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE   96 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~   96 (198)
                      ...+|+++|.+|+|||||+++|++.. .....+..+++........   ...+.+|||||.....        ...+...
T Consensus         3 ~~~ki~i~G~~~vGKSsl~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~--------~~~~~~~   73 (175)
T 2nzj_A            3 ALYRVVLLGDPGVGKTSLASLFAGKQ-ERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLD--------KSWSQES   73 (175)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHCC------CCCSSSSEEEEEEEETTEEEEEEEECCC---------------CHHHHH
T ss_pred             eEEEEEEECCCCccHHHHHHHHhcCC-CccccCccccceeEEEEEECCEEEEEEEEecCCCCccc--------hhhhHHh
Confidence            35789999999999999999999873 3333333444432222222   2468999999963210        1112222


Q ss_pred             HHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHhh----CCcEEEEEeccCCCCcHHHH-HHHHHHHHHHHhccCCCCC
Q 029158           97 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS----QTKYQVVLTKTDTVFPIDVA-RRAMQIEESLKANNSLVQP  170 (198)
Q Consensus        97 ~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~~----~~p~iiv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~  170 (198)
                      ++   ..+|++++|+|.++...... ..++..+...    +.|+++|+||+|+....... +....+...      .+.+
T Consensus        74 ~~---~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~------~~~~  144 (175)
T 2nzj_A           74 CL---QGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVV------FDCK  144 (175)
T ss_dssp             TT---TSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHHH------HTSE
T ss_pred             hc---ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHHH------cCCe
Confidence            22   34899999999976321111 2344444432    68999999999997643211 111111111      1368


Q ss_pred             cEEeccCCCCChHHHHHHHHHhhcc
Q 029158          171 VMMVSSKSGAGIRSLRTVLSKIARF  195 (198)
Q Consensus       171 v~~~Sa~~~~gi~~l~~~i~~~~~~  195 (198)
                      ++++||++|+|+++++++|.+.+..
T Consensus       145 ~~~~Sa~~g~gi~~l~~~l~~~~~~  169 (175)
T 2nzj_A          145 FIETSATLQHNVAELFEGVVRQLRL  169 (175)
T ss_dssp             EEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             EEEEecCCCCCHHHHHHHHHHHHHH
Confidence            9999999999999999999887643

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=99.91  E-value=2.9e-23  Score=147.61  Aligned_cols=158  Identities=19%  Similarity=0.114  Sum_probs=99.5

Q ss_pred             CCCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeE-EEEEEe------------CCceEEEeCCCCccccchh
Q 029158           18 APDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT-INFFKL------------GTKLCLVDLPGYGFAYAKE   84 (198)
Q Consensus        18 ~~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~-~~~~~~------------~~~~~iiDtpG~~~~~~~~   84 (198)
                      .....+|+++|.+|+|||||+++|++........+..+.+.. ......            ...+.+|||||....    
T Consensus         8 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~----   83 (195)
T 3bc1_A            8 YDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERF----   83 (195)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGG----
T ss_pred             cceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHH----
Confidence            345679999999999999999999987321111111111111 111111            237999999997321    


Q ss_pred             HHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHh----hCCcEEEEEeccCCCCcHHH-HHHHHHHH
Q 029158           85 EVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPIDV-ARRAMQIE  158 (198)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~----~~~p~iiv~nK~Dl~~~~~~-~~~~~~~~  158 (198)
                            ......+   ...+|++++|+|+++...... ..++..+..    .+.|+++|+||+|+...... .+....+.
T Consensus        84 ------~~~~~~~---~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~  154 (195)
T 3bc1_A           84 ------RSLTTAF---FRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELA  154 (195)
T ss_dssp             ------HHHHHHT---TTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHH
T ss_pred             ------HHHHHHH---HcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHH
Confidence                  2223333   344899999999986432222 344454443    36899999999999753221 11111222


Q ss_pred             HHHHhccCCCCCcEEeccCCCCChHHHHHHHHHhhc
Q 029158          159 ESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR  194 (198)
Q Consensus       159 ~~~~~~~~~~~~v~~~Sa~~~~gi~~l~~~i~~~~~  194 (198)
                      +..      +.+++++||+++.|+++++++|.+.+.
T Consensus       155 ~~~------~~~~~~~Sa~~~~~v~~l~~~l~~~~~  184 (195)
T 3bc1_A          155 EKY------GIPYFETSAANGTNISHAIEMLLDLIM  184 (195)
T ss_dssp             HHH------TCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             HHc------CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence            111      368999999999999999999987653

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=99.91  E-value=3.3e-23  Score=148.92  Aligned_cols=156  Identities=14%  Similarity=0.068  Sum_probs=101.5

Q ss_pred             CCCCCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE--EEEe---CCceEEEeCCCCccccchhHHHHHH
Q 029158           16 FPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FFKL---GTKLCLVDLPGYGFAYAKEEVKDAW   90 (198)
Q Consensus        16 ~~~~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~--~~~~---~~~~~iiDtpG~~~~~~~~~~~~~~   90 (198)
                      .++...++|+++|.+|+|||||+++|++..   ....+.+++....  ....   ...+.+|||||....          
T Consensus         9 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~----------   75 (206)
T 2bov_A            9 QNSLALHKVIMVGSGGVGKSALTLQFMYDE---FVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY----------   75 (206)
T ss_dssp             --CCCEEEEEEECSTTSSHHHHHHHHHHSC---CCTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCC----------
T ss_pred             CCCCceEEEEEECCCCCCHHHHHHHHHhCC---CCCCCCCccceEEEEEEEECCEEEEEEEEcCCChhhh----------
Confidence            345567899999999999999999999873   2334444443321  1122   247899999996432          


Q ss_pred             HHHHHHHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHh----hCCcEEEEEeccCCCCcHH--HHHHHHHHHHHHHh
Q 029158           91 EELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPID--VARRAMQIEESLKA  163 (198)
Q Consensus        91 ~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~----~~~p~iiv~nK~Dl~~~~~--~~~~~~~~~~~~~~  163 (198)
                      ......++..   +|++++|+|+++...... ..++..+..    .+.|+++|+||+|+.....  .++......+    
T Consensus        76 ~~~~~~~~~~---~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~----  148 (206)
T 2bov_A           76 AAIRDNYFRS---GEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQ----  148 (206)
T ss_dssp             HHHHHHHHHH---CSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHH----
T ss_pred             HHHHHHHHhh---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHHH----
Confidence            2233344443   899999999986321111 233333433    2689999999999976432  2222222211    


Q ss_pred             ccCCCCCcEEeccCCCCChHHHHHHHHHhhc
Q 029158          164 NNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR  194 (198)
Q Consensus       164 ~~~~~~~v~~~Sa~~~~gi~~l~~~i~~~~~  194 (198)
                      .   +.+++++||++|.|+++++++|.+.+.
T Consensus       149 ~---~~~~~~~Sa~~g~gi~~l~~~l~~~i~  176 (206)
T 2bov_A          149 W---NVNYVETSAKTRANVDKVFFDLMREIR  176 (206)
T ss_dssp             H---TCEEEEECTTTCTTHHHHHHHHHHHHH
T ss_pred             h---CCeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            1   368999999999999999999988764

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=99.91  E-value=1.5e-23  Score=147.76  Aligned_cols=159  Identities=13%  Similarity=0.092  Sum_probs=100.2

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEE---eCCceEEEeCCCCccccchhHHHHHHHHHHH
Q 029158           19 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVK   95 (198)
Q Consensus        19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~   95 (198)
                      ....+|+++|.+|+|||||+++|++...........+.+.......   ....+.+|||||....          .....
T Consensus        10 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----------~~~~~   79 (181)
T 2efe_B           10 SINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERY----------HSLAP   79 (181)
T ss_dssp             CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGG----------GGGTH
T ss_pred             ccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhh----------hhhhH
Confidence            3457899999999999999999998742111111112222222111   2357999999996321          12222


Q ss_pred             HHHhcccccceEEEEEeCCCCCC-cCcHHHHHHHHhh---CCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCc
Q 029158           96 EYVSTRVSLKRVCLLIDTKWGVK-PRDHELISLMERS---QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPV  171 (198)
Q Consensus        96 ~~~~~~~~~d~vi~v~d~~~~~~-~~~~~~~~~~~~~---~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v  171 (198)
                      .++.   .+|++++|+|+++... .....++..+...   +.|+++|+||+|+.......  .+..++....   .+.++
T Consensus        80 ~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~--~~~~~~~~~~---~~~~~  151 (181)
T 2efe_B           80 MYYR---GAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVT--AEDAQTYAQE---NGLFF  151 (181)
T ss_dssp             HHHT---TCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSC--HHHHHHHHHH---TTCEE
T ss_pred             HHhc---cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCC--HHHHHHHHHH---cCCEE
Confidence            3333   3899999999986322 1123445555443   68899999999997543211  1112222211   14689


Q ss_pred             EEeccCCCCChHHHHHHHHHhhcc
Q 029158          172 MMVSSKSGAGIRSLRTVLSKIARF  195 (198)
Q Consensus       172 ~~~Sa~~~~gi~~l~~~i~~~~~~  195 (198)
                      +++||++|+|+++++++|.+.+..
T Consensus       152 ~~~Sa~~g~gi~~l~~~l~~~~~~  175 (181)
T 2efe_B          152 METSAKTATNVKEIFYEIARRLPR  175 (181)
T ss_dssp             EECCSSSCTTHHHHHHHHHHTCC-
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHh
Confidence            999999999999999999987754

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=99.91  E-value=1.8e-24  Score=155.06  Aligned_cols=159  Identities=18%  Similarity=0.141  Sum_probs=96.2

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHHHHh
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS   99 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~   99 (198)
                      ...+|+++|++|+|||||++++.+.. .....+..+.+. ..+...+..+.+|||||....          ..+...++ 
T Consensus        24 ~~~ki~lvG~~~vGKSsLi~~l~~~~-~~~~~~t~~~~~-~~~~~~~~~l~i~Dt~G~~~~----------~~~~~~~~-   90 (198)
T 1f6b_A           24 KTGKLVFLGLDNAGKTTLLHMLKDDR-LGQHVPTLHPTS-EELTIAGMTFTTFDLGGHIQA----------RRVWKNYL-   90 (198)
T ss_dssp             CCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCSC-EEEEETTEEEEEEEECC--------------CCGGGGGG-
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcCC-CCccCCCCCcee-EEEEECCEEEEEEECCCcHhh----------HHHHHHHH-
Confidence            45689999999999999999999873 332222222222 122233578999999996321          11122233 


Q ss_pred             cccccceEEEEEeCCCCCCcCc-HHHHHHHH----hhCCcEEEEEeccCCCCcHHHHHHHHHHHHHH----------Hhc
Q 029158          100 TRVSLKRVCLLIDTKWGVKPRD-HELISLME----RSQTKYQVVLTKTDTVFPIDVARRAMQIEESL----------KAN  164 (198)
Q Consensus       100 ~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~----~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~----------~~~  164 (198)
                        ..+|++++|+|+++...-.. ..++..+.    ..+.|+++|+||+|+......++..+.+....          ...
T Consensus        91 --~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (198)
T 1f6b_A           91 --PAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKEL  168 (198)
T ss_dssp             --GGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCTTTC
T ss_pred             --hcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccccCCHHHHHHHhCcccccccccccccccc
Confidence              34899999999986321111 22333332    23789999999999976433322222221100          000


Q ss_pred             cCCCCCcEEeccCCCCChHHHHHHHHHhh
Q 029158          165 NSLVQPVMMVSSKSGAGIRSLRTVLSKIA  193 (198)
Q Consensus       165 ~~~~~~v~~~Sa~~~~gi~~l~~~i~~~~  193 (198)
                      .....+++++||++|+|+++++++|.+.+
T Consensus       169 ~~~~~~~~~~SA~~g~gv~~l~~~l~~~l  197 (198)
T 1f6b_A          169 NARPLEVFMCSVLKRQGYGEGFRWMAQYI  197 (198)
T ss_dssp             CSCCEEEEECBTTTTBSHHHHHHHHHTTC
T ss_pred             cCceEEEEEEECCCCCCHHHHHHHHHHhc
Confidence            11346799999999999999999998765

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.91  E-value=2.3e-23  Score=146.57  Aligned_cols=157  Identities=15%  Similarity=0.150  Sum_probs=99.3

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE--EEEe---CCceEEEeCCCCccccchhHHHHHHHHH
Q 029158           19 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEEL   93 (198)
Q Consensus        19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~--~~~~---~~~~~iiDtpG~~~~~~~~~~~~~~~~~   93 (198)
                      ....+|+++|.+|+|||||+++|++.. .......+.++.+..  ....   ...+.+|||||...          +...
T Consensus         8 ~~~~~i~v~G~~~~GKssli~~l~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~----------~~~~   76 (180)
T 2g6b_A            8 DVAFKVMLVGDSGVGKTCLLVRFKDGA-FLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQER----------FRSV   76 (180)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSC-CCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC----------------
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHhCC-CCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHH----------HHHH
Confidence            456789999999999999999999873 221122232333322  1122   24789999999622          1222


Q ss_pred             HHHHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHh---hCCcEEEEEeccCCCCcHHHH-HHHHHHHHHHHhccCCC
Q 029158           94 VKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDVA-RRAMQIEESLKANNSLV  168 (198)
Q Consensus        94 ~~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~---~~~p~iiv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~  168 (198)
                      .   ......+|++++|+|+++...... ..++..+..   .+.|+++|+||+|+....... +....+.+..      +
T Consensus        77 ~---~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~------~  147 (180)
T 2g6b_A           77 T---HAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEY------G  147 (180)
T ss_dssp             -----CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHH------T
T ss_pred             H---HHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccccCHHHHHHHHHHc------C
Confidence            2   233345899999999986322222 234444443   468999999999998643211 1111222211      4


Q ss_pred             CCcEEeccCCCCChHHHHHHHHHhhcc
Q 029158          169 QPVMMVSSKSGAGIRSLRTVLSKIARF  195 (198)
Q Consensus       169 ~~v~~~Sa~~~~gi~~l~~~i~~~~~~  195 (198)
                      .+++++||+++.|+++++++|.+.+..
T Consensus       148 ~~~~~~Sa~~~~gi~~l~~~l~~~~~~  174 (180)
T 2g6b_A          148 LPFMETSAKTGLNVDLAFTAIAKELKR  174 (180)
T ss_dssp             CCEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred             CeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            689999999999999999999887653

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=99.91  E-value=6e-24  Score=151.05  Aligned_cols=157  Identities=15%  Similarity=0.098  Sum_probs=100.6

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEE---eCCceEEEeCCCCccccchhHHHHHHHHHHH
Q 029158           19 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVK   95 (198)
Q Consensus        19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~   95 (198)
                      ....+|+++|.+|+|||||+++|++........+..+++.......   ....+.+|||||.....          ....
T Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~----------~~~~   89 (189)
T 2gf9_A           20 DYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYR----------TITT   89 (189)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSC----------CSGG
T ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHh----------hhHH
Confidence            3457999999999999999999998742222222222222222112   23578999999964321          1111


Q ss_pred             HHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHhh---CCcEEEEEeccCCCCcHHH-HHHHHHHHHHHHhccCCCCC
Q 029158           96 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS---QTKYQVVLTKTDTVFPIDV-ARRAMQIEESLKANNSLVQP  170 (198)
Q Consensus        96 ~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~~---~~p~iiv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~  170 (198)
                      .+   ...+|++++|+|+++...... ..++..+...   +.|+++|+||+|+...... .+....+.+..      +.+
T Consensus        90 ~~---~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~------~~~  160 (189)
T 2gf9_A           90 AY---YRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDL------GFE  160 (189)
T ss_dssp             GG---GTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHH------TCE
T ss_pred             Hh---ccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCCHHHHHHHHHHc------CCe
Confidence            22   234899999999976322222 3345555543   6899999999999754321 11112222221      368


Q ss_pred             cEEeccCCCCChHHHHHHHHHhhc
Q 029158          171 VMMVSSKSGAGIRSLRTVLSKIAR  194 (198)
Q Consensus       171 v~~~Sa~~~~gi~~l~~~i~~~~~  194 (198)
                      ++++||++|.|+++++++|.+.+.
T Consensus       161 ~~~~Sa~~g~gi~~l~~~l~~~i~  184 (189)
T 2gf9_A          161 FFEASAKENINVKQVFERLVDVIC  184 (189)
T ss_dssp             EEECBTTTTBSHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            999999999999999999988764

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=99.91  E-value=2.3e-24  Score=165.89  Aligned_cols=161  Identities=19%  Similarity=0.189  Sum_probs=109.8

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEE--Ee--CCceEEEeCCCCccccchhHHHHHHHHHHHH
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF--KL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE   96 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~--~~--~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~   96 (198)
                      .++|+++|.+|+|||||+++|++..  ..+.+++.+|......  ..  ...+.+|||||+.+....      +..+...
T Consensus       158 la~V~lvG~~nvGKSTLln~L~~~~--~~i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~------~~~l~~~  229 (342)
T 1lnz_A          158 LADVGLVGFPSVGKSTLLSVVSSAK--PKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQ------GVGLGHQ  229 (342)
T ss_dssp             CCCEEEESSTTSSHHHHHHHSEEEC--CEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTC------TTTTHHH
T ss_pred             cCeeeeeCCCCCCHHHHHHHHHcCC--CccccCCccccCceEEEEEeCCCceEEEecCCCCcccccc------cchhHHH
Confidence            3579999999999999999999874  4567787777654422  22  267999999997432111      0122334


Q ss_pred             HHhcccccceEEEEEeCCCC---CCcCc-HHHHHHHHh-----hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCC
Q 029158           97 YVSTRVSLKRVCLLIDTKWG---VKPRD-HELISLMER-----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSL  167 (198)
Q Consensus        97 ~~~~~~~~d~vi~v~d~~~~---~~~~~-~~~~~~~~~-----~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~  167 (198)
                      |+.....+|++++|+|+++.   -...+ ..++..+..     .++|+++|+||+|+....+   ..+.+.+.+.    .
T Consensus       230 fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~e---~~~~l~~~l~----~  302 (342)
T 1lnz_A          230 FLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAE---NLEAFKEKLT----D  302 (342)
T ss_dssp             HHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHH---HHHHHHHHCC----S
T ss_pred             HHHHHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCHH---HHHHHHHHhh----c
Confidence            55555569999999999752   11111 234455554     3689999999999986432   1222332221    1


Q ss_pred             CCCcEEeccCCCCChHHHHHHHHHhhccc
Q 029158          168 VQPVMMVSSKSGAGIRSLRTVLSKIARFA  196 (198)
Q Consensus       168 ~~~v~~~Sa~~~~gi~~l~~~i~~~~~~~  196 (198)
                      ..+++++||++++|+++++++|.+.+...
T Consensus       303 ~~~v~~iSA~tg~gi~eL~~~l~~~l~~~  331 (342)
T 1lnz_A          303 DYPVFPISAVTREGLRELLFEVANQLENT  331 (342)
T ss_dssp             CCCBCCCSSCCSSTTHHHHHHHHHHHTSC
T ss_pred             CCCEEEEECCCCcCHHHHHHHHHHHHhhC
Confidence            26899999999999999999999887643

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=99.91  E-value=1.8e-23  Score=148.63  Aligned_cols=155  Identities=15%  Similarity=0.125  Sum_probs=96.3

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE--EEEe---CCceEEEeCCCCccccchhHHHHHHHHHH
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELV   94 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~--~~~~---~~~~~iiDtpG~~~~~~~~~~~~~~~~~~   94 (198)
                      ...+|+++|.+|+|||||+++|++..   ....+.+++....  ....   ...+.+|||||...          +....
T Consensus        20 ~~~ki~vvG~~~~GKSsli~~l~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----------~~~~~   86 (190)
T 3con_A           20 TEYKLVVVGAGGVGKSALTIQLIQNH---FVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEE----------YSAMR   86 (190)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSS---CCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC------------------
T ss_pred             ceeEEEEECcCCCCHHHHHHHHHcCC---CccccCCccceEEEEEEEECCEEEEEEEEECCChHH----------HHHHH
Confidence            34689999999999999999999873   2233333333221  1111   24589999999522          12222


Q ss_pred             HHHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHh----hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCC
Q 029158           95 KEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQ  169 (198)
Q Consensus        95 ~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~----~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  169 (198)
                      ..++   ..+|++++|+|+.......+ ..++..+..    .+.|+++|+||+|+.......+....+.+..      +.
T Consensus        87 ~~~~---~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~------~~  157 (190)
T 3con_A           87 DQYM---RTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTVDTKQAHELAKSY------GI  157 (190)
T ss_dssp             ---C---TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHHH------TC
T ss_pred             HHhh---CcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCcccCCHHHHHHHHHHc------CC
Confidence            3333   34899999999986322112 223333433    2689999999999976321111112222221      36


Q ss_pred             CcEEeccCCCCChHHHHHHHHHhhccc
Q 029158          170 PVMMVSSKSGAGIRSLRTVLSKIARFA  196 (198)
Q Consensus       170 ~v~~~Sa~~~~gi~~l~~~i~~~~~~~  196 (198)
                      +++++||+++.|+++++++|.+.+...
T Consensus       158 ~~~~~Sa~~~~gi~~l~~~l~~~~~~~  184 (190)
T 3con_A          158 PFIETSAKTRQGVEDAFYTLVREIRQY  184 (190)
T ss_dssp             CEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred             eEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence            899999999999999999999877543

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=99.90  E-value=2.6e-23  Score=148.30  Aligned_cols=157  Identities=17%  Similarity=0.135  Sum_probs=101.4

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE--EEEe---CCceEEEeCCCCccccchhHHHHHHHHH
Q 029158           19 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEEL   93 (198)
Q Consensus        19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~--~~~~---~~~~~iiDtpG~~~~~~~~~~~~~~~~~   93 (198)
                      ....+|+++|.+|+|||||+++|++...  .....+.++.+..  ....   ...+.+|||||....          ...
T Consensus        14 ~~~~ki~v~G~~~~GKSsli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----------~~~   81 (196)
T 3tkl_A           14 DYLFKLLLIGDSGVGKSCLLLRFADDTY--TESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF----------RTI   81 (196)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCC--CSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGG----------CTT
T ss_pred             ccceEEEEECcCCCCHHHHHHHHHcCCC--CCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhh----------hhh
Confidence            3457999999999999999999998742  1222233333322  2222   257999999996322          122


Q ss_pred             HHHHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHhh---CCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCC
Q 029158           94 VKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS---QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQ  169 (198)
Q Consensus        94 ~~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~~---~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  169 (198)
                      ...++..   +|++++|+|+++...... ..++..+...   +.|+++|+||+|+........  ...++....   .+.
T Consensus        82 ~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~--~~~~~~~~~---~~~  153 (196)
T 3tkl_A           82 TSSYYRG---AHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDY--TTAKEFADS---LGI  153 (196)
T ss_dssp             HHHHHTT---CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCH--HHHHHHHHH---TTC
T ss_pred             HHHHHhh---CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCH--HHHHHHHHH---cCC
Confidence            2334433   899999999986322111 3344445433   689999999999976532211  111111111   147


Q ss_pred             CcEEeccCCCCChHHHHHHHHHhhcc
Q 029158          170 PVMMVSSKSGAGIRSLRTVLSKIARF  195 (198)
Q Consensus       170 ~v~~~Sa~~~~gi~~l~~~i~~~~~~  195 (198)
                      +++++||++|.|+++++++|.+.+..
T Consensus       154 ~~~~~Sa~~g~gv~~l~~~l~~~i~~  179 (196)
T 3tkl_A          154 PFLETSAKNATNVEQSFMTMAAEIKK  179 (196)
T ss_dssp             CEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred             cEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            89999999999999999999887643

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.90  E-value=3.9e-23  Score=164.67  Aligned_cols=171  Identities=25%  Similarity=0.308  Sum_probs=113.1

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE---EEEeCCceEEEeCCCCccccchh-HHHHHHHHHH
Q 029158           19 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAKE-EVKDAWEELV   94 (198)
Q Consensus        19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~---~~~~~~~~~iiDtpG~~~~~~~~-~~~~~~~~~~   94 (198)
                      ...++|+++|++|+|||||+|+|++. ....+++.+++|.+..   +...+..+.+|||||+....... ...+.+..  
T Consensus       178 ~~~~kvaivG~~gvGKSTLln~l~g~-~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~--  254 (439)
T 1mky_A          178 TDAIKVAIVGRPNVGKSTLFNAILNK-ERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSN--  254 (439)
T ss_dssp             CSCEEEEEECSTTSSHHHHHHHHHTS-TTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCC--
T ss_pred             ccCceEEEECCCCCCHHHHHHHHhCC-cccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHH--
Confidence            35689999999999999999999998 4566788888887643   33346679999999973211000 00000000  


Q ss_pred             HHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHH--HHHHHHHHHHHHHhccCCCCCcE
Q 029158           95 KEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPID--VARRAMQIEESLKANNSLVQPVM  172 (198)
Q Consensus        95 ~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~v~  172 (198)
                      .........+|++++++|+..+....+.++...+...++|+++|+||+|+.....  .++....+.+.+...  ...+++
T Consensus       255 ~~~~~~i~~ad~vllv~d~~~~~~~~~~~i~~~l~~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~--~~~~~~  332 (439)
T 1mky_A          255 YRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFI--DYSPLI  332 (439)
T ss_dssp             HHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGG--TTSCEE
T ss_pred             HHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccC--CCCcEE
Confidence            0011122338999999999987776666677777777899999999999986543  333434444433322  257899


Q ss_pred             EeccCCCCChHHHHHHHHHhhc
Q 029158          173 MVSSKSGAGIRSLRTVLSKIAR  194 (198)
Q Consensus       173 ~~Sa~~~~gi~~l~~~i~~~~~  194 (198)
                      ++||++|.|++++++.+.+.+.
T Consensus       333 ~~SA~~g~gv~~l~~~i~~~~~  354 (439)
T 1mky_A          333 FTSADKGWNIDRMIDAMNLAYA  354 (439)
T ss_dssp             ECBTTTTBSHHHHHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHHHHHH
Confidence            9999999999999999987654

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.90  E-value=6.8e-24  Score=149.78  Aligned_cols=160  Identities=17%  Similarity=0.107  Sum_probs=101.2

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHHHH
Q 029158           19 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV   98 (198)
Q Consensus        19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~   98 (198)
                      ....+|+++|++|+|||||++++++.. .....+..+... ..+...+..+.+|||||....          ....   .
T Consensus        16 ~~~~~i~v~G~~~~GKssli~~l~~~~-~~~~~~t~~~~~-~~~~~~~~~~~i~Dt~G~~~~----------~~~~---~   80 (183)
T 1moz_A           16 NKELRILILGLDGAGKTTILYRLQIGE-VVTTKPTIGFNV-ETLSYKNLKLNVWDLGGQTSI----------RPYW---R   80 (183)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTCCSE-EEEECSSTTCCE-EEEEETTEEEEEEEEC----C----------CTTG---G
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCC-cCccCCcCccce-EEEEECCEEEEEEECCCCHhH----------HHHH---H
Confidence            567899999999999999999999873 333333333222 122223678999999996331          1111   1


Q ss_pred             hcccccceEEEEEeCCCCCCcCc-HHHHHHHH----hhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEE
Q 029158           99 STRVSLKRVCLLIDTKWGVKPRD-HELISLME----RSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMM  173 (198)
Q Consensus        99 ~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~----~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  173 (198)
                      .....+|++++|+|+++...... ..++..+.    ..+.|+++|+||+|+......++..+.+..  ........++++
T Consensus        81 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~--~~~~~~~~~~~~  158 (183)
T 1moz_A           81 CYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNL--VELKDRSWSIVA  158 (183)
T ss_dssp             GTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTT--TTCCSSCEEEEE
T ss_pred             HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCCCHHHHHHHhCc--ccccCCceEEEE
Confidence            22345899999999986422221 22333333    246899999999999865433322222111  111122457999


Q ss_pred             eccCCCCChHHHHHHHHHhhcc
Q 029158          174 VSSKSGAGIRSLRTVLSKIARF  195 (198)
Q Consensus       174 ~Sa~~~~gi~~l~~~i~~~~~~  195 (198)
                      +||++|+|+++++++|.+.+..
T Consensus       159 ~Sa~~~~gi~~l~~~l~~~~~~  180 (183)
T 1moz_A          159 SSAIKGEGITEGLDWLIDVIKE  180 (183)
T ss_dssp             EBGGGTBTHHHHHHHHHHHHHH
T ss_pred             ccCCCCcCHHHHHHHHHHHHHh
Confidence            9999999999999999987653

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.90  E-value=4.9e-24  Score=148.48  Aligned_cols=154  Identities=14%  Similarity=0.094  Sum_probs=97.5

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEe---CCceEEEeCCCCccccchhHHHHHHHHHHHHHH
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV   98 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~   98 (198)
                      .+|+++|++|+|||||+++|++........+..+.+........   ...+.+|||||....          ......++
T Consensus         4 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~----------~~~~~~~~   73 (170)
T 1ek0_A            4 IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERF----------ASLAPXYY   73 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGG----------GGGHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhh----------hhhhhhhh
Confidence            57999999999999999999987421112222222222222222   347999999996321          12233344


Q ss_pred             hcccccceEEEEEeCCCCCCcCc-HHHHHHHHh---hCCcEEEEEeccCCCCcH---HH-HHHHHHHHHHHHhccCCCCC
Q 029158           99 STRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPI---DV-ARRAMQIEESLKANNSLVQP  170 (198)
Q Consensus        99 ~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~---~~~p~iiv~nK~Dl~~~~---~~-~~~~~~~~~~~~~~~~~~~~  170 (198)
                      .   .+|++++|+|+++...... ..++..+..   .+.|+++|+||+|+....   .. .+....+.+.      .+.+
T Consensus        74 ~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~------~~~~  144 (170)
T 1ek0_A           74 R---NAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEE------KGLL  144 (170)
T ss_dssp             T---TCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHH------HTCE
T ss_pred             c---cCcEEEEEEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHHHHHHH------cCCE
Confidence            3   3899999999986322111 233444433   268999999999997541   11 1111122111      1368


Q ss_pred             cEEeccCCCCChHHHHHHHHHhhc
Q 029158          171 VMMVSSKSGAGIRSLRTVLSKIAR  194 (198)
Q Consensus       171 v~~~Sa~~~~gi~~l~~~i~~~~~  194 (198)
                      ++++||++|.|+++++++|.+.+.
T Consensus       145 ~~~~Sa~~~~gi~~l~~~l~~~i~  168 (170)
T 1ek0_A          145 FFETSAKTGENVNDVFLGIGEKIP  168 (170)
T ss_dssp             EEECCTTTCTTHHHHHHHHHTTSC
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHHh
Confidence            999999999999999999988764

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=99.90  E-value=1.6e-23  Score=148.40  Aligned_cols=153  Identities=16%  Similarity=0.129  Sum_probs=99.8

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE---EEEe--CCceEEEeCCCCccccchhHHHHHHHHHH
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELV   94 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~---~~~~--~~~~~iiDtpG~~~~~~~~~~~~~~~~~~   94 (198)
                      ...+|+++|.+|+|||||+++|++..   ....+.+++.+..   ....  ...+.+|||||....          ..+.
T Consensus         3 ~~~ki~v~G~~~~GKSsli~~l~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----------~~~~   69 (189)
T 4dsu_A            3 TEYKLVVVGADGVGKSALTIQLIQNH---FVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY----------SAMR   69 (189)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHSS---CCCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC-------------CTTH
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHhCC---CCCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHH----------HHHH
Confidence            35689999999999999999999873   2334444443322   1111  245788999996331          2223


Q ss_pred             HHHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHh----hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCC
Q 029158           95 KEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQ  169 (198)
Q Consensus        95 ~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~----~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  169 (198)
                      ..++..   +|++++|+|+++...... ..++..+..    .+.|+++|+||+|+.......+....+.+..      +.
T Consensus        70 ~~~~~~---~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~------~~  140 (189)
T 4dsu_A           70 DQYMRT---GEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLARSY------GI  140 (189)
T ss_dssp             HHHHHH---CSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCSSCHHHHHHHHHHH------TC
T ss_pred             HHHHhc---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcccccCHHHHHHHHHHc------CC
Confidence            333333   899999999986321111 223333333    3689999999999975432222233333322      37


Q ss_pred             CcEEeccCCCCChHHHHHHHHHhhc
Q 029158          170 PVMMVSSKSGAGIRSLRTVLSKIAR  194 (198)
Q Consensus       170 ~v~~~Sa~~~~gi~~l~~~i~~~~~  194 (198)
                      +++++||++|+|+++++++|.+.+.
T Consensus       141 ~~~~~Sa~~g~gi~~l~~~l~~~~~  165 (189)
T 4dsu_A          141 PFIETSAKTRQGVDDAFYTLVREIR  165 (189)
T ss_dssp             CEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             eEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            8999999999999999999988764

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=99.90  E-value=9.9e-24  Score=164.18  Aligned_cols=147  Identities=17%  Similarity=0.240  Sum_probs=110.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEE---EeCCceEEEeCCCCccccchhHHHHHHHHHHHHHHh
Q 029158           23 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF---KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS   99 (198)
Q Consensus        23 ~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~---~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~   99 (198)
                      +|+++|.+++|||||+++|+..          ++|.+..+.   ..+..+.+|||||+.+             +...+..
T Consensus        23 ~i~iiG~~d~GKSTL~~~L~~~----------giTi~~~~~~~~~~~~~i~iiDtPGh~~-------------f~~~~~~   79 (370)
T 2elf_A           23 NVAIIGTEKSGRTSLAANLGKK----------GTSSDITMYNNDKEGRNMVFVDAHSYPK-------------TLKSLIT   79 (370)
T ss_dssp             EEEEEESTTSSHHHHHHTTSEE----------EEESSSEEEEECSSSSEEEEEECTTTTT-------------CHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhC----------CEEEEeeEEEEecCCeEEEEEECCChHH-------------HHHHHHH
Confidence            8999999999999999999821          233332222   2357899999999732             2333444


Q ss_pred             cccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcE-EEEEe-ccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEE--ec
Q 029158          100 TRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKY-QVVLT-KTDTVFPIDVARRAMQIEESLKANNSLVQPVMM--VS  175 (198)
Q Consensus       100 ~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~-iiv~n-K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~S  175 (198)
                      ....+|++++|+| ..+......+++..+...+.|. ++++| |+|+ +....++..+++++.+........++++  +|
T Consensus        80 ~~~~aD~ailVvd-~~g~~~qt~e~~~~~~~~~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~S  157 (370)
T 2elf_A           80 ALNISDIAVLCIP-PQGLDAHTGECIIALDLLGFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTN  157 (370)
T ss_dssp             HHHTCSEEEEEEC-TTCCCHHHHHHHHHHHHTTCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCC
T ss_pred             HHHHCCEEEEEEc-CCCCcHHHHHHHHHHHHcCCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEecccc
Confidence            4456999999999 8777777788888888888898 99999 9999 6554455555666655443333578999  99


Q ss_pred             cCC---CCChHHHHHHHHHhhc
Q 029158          176 SKS---GAGIRSLRTVLSKIAR  194 (198)
Q Consensus       176 a~~---~~gi~~l~~~i~~~~~  194 (198)
                      |++   ++|+++++++|.+.+.
T Consensus       158 A~~~~~g~gi~~L~~~l~~~~~  179 (370)
T 2elf_A          158 KSAKNPFEGVDELKARINEVAE  179 (370)
T ss_dssp             TTSSSTTTTHHHHHHHHHHHHH
T ss_pred             cccCcCCCCHHHHHHHHHhhcc
Confidence            999   9999999999988764

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=99.90  E-value=3.4e-23  Score=150.12  Aligned_cols=158  Identities=12%  Similarity=0.049  Sum_probs=92.6

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE--EEE---eCCceEEEeCCCCccccchhHHHHHHHHH
Q 029158           19 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEEL   93 (198)
Q Consensus        19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~--~~~---~~~~~~iiDtpG~~~~~~~~~~~~~~~~~   93 (198)
                      ....+|+++|.+|+|||||+++|++...   ...+.+++....  ...   ....+.+|||||...          +...
T Consensus        32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~----------~~~~   98 (214)
T 2j1l_A           32 VRSVKVVLVGDGGCGKTSLLMVFADGAF---PESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDD----------YDRL   98 (214)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHC----------CCCCCEEEEEEEEETTEEEEEEEEEC-------------------
T ss_pred             cceEEEEEECcCCCCHHHHHHHHHcCCC---CCCCCCccceeEEEEEEECCEEEEEEEEECCCchh----------hhHH
Confidence            4567999999999999999999998731   222333332211  111   134689999999522          1222


Q ss_pred             HHHHHhcccccceEEEEEeCCCCCCcCcH--HHHHHHHhh--CCcEEEEEeccCCCCcHHHHHHH----------HHHHH
Q 029158           94 VKEYVSTRVSLKRVCLLIDTKWGVKPRDH--ELISLMERS--QTKYQVVLTKTDTVFPIDVARRA----------MQIEE  159 (198)
Q Consensus        94 ~~~~~~~~~~~d~vi~v~d~~~~~~~~~~--~~~~~~~~~--~~p~iiv~nK~Dl~~~~~~~~~~----------~~~~~  159 (198)
                      ...++.   .+|++++|+|+++.......  .++..+...  +.|+++|+||+|+.......+..          +...+
T Consensus        99 ~~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~  175 (214)
T 2j1l_A           99 RPLFYP---DASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQE  175 (214)
T ss_dssp             ---------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHH
T ss_pred             HHHHhc---cCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHH
Confidence            333333   48999999999863221121  344444443  68999999999998765432221          11122


Q ss_pred             HHHhccCCCCCcEEeccCCCCChHHHHHHHHHhhc
Q 029158          160 SLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR  194 (198)
Q Consensus       160 ~~~~~~~~~~~v~~~Sa~~~~gi~~l~~~i~~~~~  194 (198)
                      .....  ...+++++||++|.|+++++++|.+.+.
T Consensus       176 ~~~~~--~~~~~~~~SA~~g~gi~el~~~l~~~~~  208 (214)
T 2j1l_A          176 MARSV--GAVAYLECSARLHDNVHAVFQEAAEVAL  208 (214)
T ss_dssp             HHHHT--TCSEEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred             HHHhc--CCCEEEEecCCCCCCHHHHHHHHHHHHH
Confidence            22111  1238999999999999999999988764

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=99.90  E-value=1.4e-23  Score=146.27  Aligned_cols=156  Identities=13%  Similarity=0.087  Sum_probs=100.7

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEe---CCceEEEeCCCCccccchhHHHHHHHHHHHHH
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY   97 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~   97 (198)
                      ..+|+++|.+|+|||||+++|++........+..+++........   ...+.+|||||+...          ......+
T Consensus         6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~----------~~~~~~~   75 (170)
T 1z0j_A            6 ELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERF----------RALAPMY   75 (170)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGG----------GGGTHHH
T ss_pred             ceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhh----------hcccHhh
Confidence            468999999999999999999987422222333333332222222   357899999997321          1222233


Q ss_pred             HhcccccceEEEEEeCCCCCCcCc-HHHHHHHHhh---CCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEE
Q 029158           98 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS---QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMM  173 (198)
Q Consensus        98 ~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~~---~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  173 (198)
                      +..   +|++++|+|+++...... ..++..+...   ..|+++|+||+|+....+...  +..++....   ...++++
T Consensus        76 ~~~---~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~--~~~~~~~~~---~~~~~~~  147 (170)
T 1z0j_A           76 YRG---SAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVME--RDAKDYADS---IHAIFVE  147 (170)
T ss_dssp             HTT---CSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCH--HHHHHHHHH---TTCEEEE
T ss_pred             CcC---CCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccccCH--HHHHHHHHH---cCCEEEE
Confidence            333   899999999986322222 2344555433   578999999999976432111  111111111   1478999


Q ss_pred             eccCCCCChHHHHHHHHHhhc
Q 029158          174 VSSKSGAGIRSLRTVLSKIAR  194 (198)
Q Consensus       174 ~Sa~~~~gi~~l~~~i~~~~~  194 (198)
                      +||+++.|+++++++|.+.+.
T Consensus       148 ~Sa~~~~~i~~l~~~i~~~i~  168 (170)
T 1z0j_A          148 TSAKNAININELFIEISRRIP  168 (170)
T ss_dssp             CBTTTTBSHHHHHHHHHHHCC
T ss_pred             EeCCCCcCHHHHHHHHHHHHh
Confidence            999999999999999988764

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=99.90  E-value=1.5e-23  Score=146.15  Aligned_cols=153  Identities=17%  Similarity=0.181  Sum_probs=95.8

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE--EEEe---CCceEEEeCCCCccccchhHHHHHHHHHHH
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVK   95 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~--~~~~---~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~   95 (198)
                      ..+|+++|++|+|||||+++|++....  ....+.++.+..  ....   ...+.+|||||....          .....
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~----------~~~~~   70 (170)
T 1g16_A            3 IMKILLIGDSGVGKSCLLVRFVEDKFN--PSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERF----------RTITT   70 (170)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCC--C-------CCEEEEEEESSSCEEEEEEECCTTGGGT----------SCCCH
T ss_pred             ceEEEEECcCCCCHHHHHHHHHhCCCC--CCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhh----------hhhHH
Confidence            468999999999999999999987321  111222222221  1222   246899999996331          11122


Q ss_pred             HHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHhh---CCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCc
Q 029158           96 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS---QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPV  171 (198)
Q Consensus        96 ~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~~---~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v  171 (198)
                      .++.   .+|++++|+|+++...... ..++..+...   +.|+++|+||+|+.......+....+.+..      +.++
T Consensus        71 ~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~------~~~~  141 (170)
T 1g16_A           71 AYYR---GAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKEL------GIPF  141 (170)
T ss_dssp             HHHT---TEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTCCSCHHHHHHHHHHH------TCCE
T ss_pred             HHhc---cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCCcCccCHHHHHHHHHHc------CCeE
Confidence            3333   3899999999986322222 2344444432   689999999999954221112122222221      3689


Q ss_pred             EEeccCCCCChHHHHHHHHHhhc
Q 029158          172 MMVSSKSGAGIRSLRTVLSKIAR  194 (198)
Q Consensus       172 ~~~Sa~~~~gi~~l~~~i~~~~~  194 (198)
                      +++||++|.|+++++++|.+.+.
T Consensus       142 ~~~Sa~~~~gv~~l~~~l~~~~~  164 (170)
T 1g16_A          142 IESSAKNDDNVNEIFFTLAKLIQ  164 (170)
T ss_dssp             EECBTTTTBSHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHH
Confidence            99999999999999999988764

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=99.90  E-value=5.3e-23  Score=142.85  Aligned_cols=151  Identities=13%  Similarity=0.069  Sum_probs=97.0

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE---EEEe--CCceEEEeCCCCccccchhHHHHHHHHHHH
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVK   95 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~---~~~~--~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~   95 (198)
                      ..+|+++|.+|+|||||+++|++..   ....+.+++....   +...  ...+.+|||||....          .....
T Consensus         4 ~~~i~v~G~~~~GKssl~~~l~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~----------~~~~~   70 (168)
T 1u8z_A            4 LHKVIMVGSGGVGKSALTLQFMYDE---FVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY----------AAIRD   70 (168)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSC---CCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---C----------HHHHH
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhCc---cCCCCCCCcceEEEEEEEECCEEEEEEEEECCCcchh----------HHHHH
Confidence            4689999999999999999999873   2233333332221   1111  247899999996321          23333


Q ss_pred             HHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHh----hCCcEEEEEeccCCCCcHH--HHHHHHHHHHHHHhccCCC
Q 029158           96 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPID--VARRAMQIEESLKANNSLV  168 (198)
Q Consensus        96 ~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~----~~~p~iiv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~  168 (198)
                      .++..   +|++++|+|+++...... ..++..+..    .+.|+++|+||+|+....+  .++.....+.    .   +
T Consensus        71 ~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~----~---~  140 (168)
T 1u8z_A           71 NYFRS---GEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQ----W---N  140 (168)
T ss_dssp             HHHHH---CSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHH----H---T
T ss_pred             HHhhc---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHHH----c---C
Confidence            44443   899999999986321111 223333332    2689999999999975432  1222222211    1   3


Q ss_pred             CCcEEeccCCCCChHHHHHHHHHhhc
Q 029158          169 QPVMMVSSKSGAGIRSLRTVLSKIAR  194 (198)
Q Consensus       169 ~~v~~~Sa~~~~gi~~l~~~i~~~~~  194 (198)
                      .+++++||++|.|+++++++|.+.+.
T Consensus       141 ~~~~~~Sa~~~~gi~~l~~~l~~~i~  166 (168)
T 1u8z_A          141 VNYVETSAKTRANVDKVFFDLMREIR  166 (168)
T ss_dssp             CEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             CeEEEeCCCCCCCHHHHHHHHHHHHH
Confidence            68999999999999999999988764

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=99.90  E-value=1.5e-23  Score=145.51  Aligned_cols=152  Identities=15%  Similarity=0.108  Sum_probs=97.1

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEE--EEEEe---CCceEEEeCCCCccccchhHHHHHHHHHHH
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI--NFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVK   95 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~--~~~~~---~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~   95 (198)
                      ..+|+++|++|+|||||++++++...   ...+.+++.+.  .....   ...+.+|||||....          ..+..
T Consensus         3 ~~~i~v~G~~~~GKSsli~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~----------~~~~~   69 (167)
T 1kao_A            3 EYKVVVLGSGGVGKSALTVQFVTGTF---IEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQF----------ASMRD   69 (167)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCC---CSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCC----------HHHHH
T ss_pred             EEEEEEECCCCCCHHHHHHHHHcCCC---cccCCCCcceeEEEEEEECCEEEEEEEEECCCchhh----------HHHHH
Confidence            36899999999999999999998732   22233333221  11111   245899999996432          22233


Q ss_pred             HHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHh----hCCcEEEEEeccCCCCcHHHH-HHHHHHHHHHHhccCCCC
Q 029158           96 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPIDVA-RRAMQIEESLKANNSLVQ  169 (198)
Q Consensus        96 ~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~----~~~p~iiv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~  169 (198)
                      .++..   +|++++|+|+.+...... ..++..+..    .+.|+++|+||+|+....+.. .....+.+..      +.
T Consensus        70 ~~~~~---~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~------~~  140 (167)
T 1kao_A           70 LYIKN---GQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEW------GC  140 (167)
T ss_dssp             HHHHH---CSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHH------TS
T ss_pred             HHhcc---CCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHHh------CC
Confidence            33333   899999999986321111 223333322    369999999999997543211 1111222111      46


Q ss_pred             CcEEeccCCCCChHHHHHHHHHhhc
Q 029158          170 PVMMVSSKSGAGIRSLRTVLSKIAR  194 (198)
Q Consensus       170 ~v~~~Sa~~~~gi~~l~~~i~~~~~  194 (198)
                      +++++||++|.|+++++++|.+.+.
T Consensus       141 ~~~~~Sa~~~~gi~~l~~~l~~~~~  165 (167)
T 1kao_A          141 PFMETSAKSKTMVDELFAEIVRQMN  165 (167)
T ss_dssp             CEEEECTTCHHHHHHHHHHHHHHHH
T ss_pred             CEEEecCCCCcCHHHHHHHHHHHHh
Confidence            8999999999999999999988765

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=99.90  E-value=1.2e-23  Score=150.01  Aligned_cols=159  Identities=15%  Similarity=0.075  Sum_probs=102.6

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEE---eCCceEEEeCCCCccccchhHHHHHHHHHHH
Q 029158           19 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVK   95 (198)
Q Consensus        19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~   95 (198)
                      ....+|+++|.+|+|||||+++|++........+..+++.......   ....+.+|||||....          .....
T Consensus        21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----------~~~~~   90 (192)
T 2fg5_A           21 IRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERF----------HSLAP   90 (192)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGG----------GGGTH
T ss_pred             CCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhh----------HhhhH
Confidence            4467999999999999999999998742222333344443332222   2357999999996321          12222


Q ss_pred             HHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHhh---CCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCc
Q 029158           96 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS---QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPV  171 (198)
Q Consensus        96 ~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~~---~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v  171 (198)
                      .++.   .+|++++|+|+++...... ..++..+...   +.|+++|+||+|+.......  .+..++....   .+.++
T Consensus        91 ~~~~---~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~--~~~~~~~~~~---~~~~~  162 (192)
T 2fg5_A           91 MYYR---GSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVP--LKDAKEYAES---IGAIV  162 (192)
T ss_dssp             HHHT---TCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSC--HHHHHHHHHT---TTCEE
T ss_pred             Hhhc---cCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccC--HHHHHHHHHH---cCCEE
Confidence            3333   3899999999986322111 2344444443   68999999999997432110  1122222221   24789


Q ss_pred             EEeccCCCCChHHHHHHHHHhhcc
Q 029158          172 MMVSSKSGAGIRSLRTVLSKIARF  195 (198)
Q Consensus       172 ~~~Sa~~~~gi~~l~~~i~~~~~~  195 (198)
                      +++||+++.|+++++++|.+.+..
T Consensus       163 ~~~Sa~~~~gi~~l~~~l~~~i~~  186 (192)
T 2fg5_A          163 VETSAKNAINIEELFQGISRQIPP  186 (192)
T ss_dssp             EECBTTTTBSHHHHHHHHHHTCC-
T ss_pred             EEEeCCCCcCHHHHHHHHHHHHHh
Confidence            999999999999999999987653

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=99.90  E-value=2.7e-23  Score=144.41  Aligned_cols=154  Identities=14%  Similarity=0.057  Sum_probs=97.8

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE--EEEe---CCceEEEeCCCCccccchhHHHHHHHHHHH
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVK   95 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~--~~~~---~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~   95 (198)
                      ..+|+++|.+|+|||||+++|++..   ....+.+++....  ....   ...+.+|||||....          ..+..
T Consensus         3 ~~ki~v~G~~~~GKssli~~l~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~----------~~~~~   69 (167)
T 1c1y_A            3 EYKLVVLGSGGVGKSALTVQFVQGI---FVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQF----------TAMRD   69 (167)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCC---CCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSS----------TTHHH
T ss_pred             eeEEEEECCCCCCHHHHHHHHHcCC---CCCCCCCCccceEEEEEEECCEEEEEEEEECCChHHH----------HHHHH
Confidence            3689999999999999999999873   1223333332211  1111   246899999996432          12222


Q ss_pred             HHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHh----hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCC
Q 029158           96 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQP  170 (198)
Q Consensus        96 ~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~----~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (198)
                      .++..   +|++++|+|+.+...... ..++..+..    .+.|+++|+||+|+.......  .+..++.....  ...+
T Consensus        70 ~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~--~~~~~~~~~~~--~~~~  142 (167)
T 1c1y_A           70 LYMKN---GQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVG--KEQGQNLARQW--CNCA  142 (167)
T ss_dssp             HHHHH---CSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSC--HHHHHHHHHHT--TSCE
T ss_pred             HHhcc---CCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCC--HHHHHHHHHHc--cCCc
Confidence            33333   899999999986321112 233433332    379999999999997543211  11122221111  1478


Q ss_pred             cEEeccCCCCChHHHHHHHHHhhc
Q 029158          171 VMMVSSKSGAGIRSLRTVLSKIAR  194 (198)
Q Consensus       171 v~~~Sa~~~~gi~~l~~~i~~~~~  194 (198)
                      ++++||++|.|+++++++|.+.+.
T Consensus       143 ~~~~Sa~~~~gi~~l~~~l~~~i~  166 (167)
T 1c1y_A          143 FLESSAKSKINVNEIFYDLVRQIN  166 (167)
T ss_dssp             EEECBTTTTBSHHHHHHHHHHHHT
T ss_pred             EEEecCCCCCCHHHHHHHHHHHHh
Confidence            999999999999999999988763

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=99.90  E-value=3.3e-24  Score=152.34  Aligned_cols=160  Identities=18%  Similarity=0.084  Sum_probs=102.7

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHHHH
Q 029158           19 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV   98 (198)
Q Consensus        19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~   98 (198)
                      ....+|+++|.+|+|||||++++++.. .....+..+.+. ..+...+..+.+|||||......          ...   
T Consensus        20 ~~~~~i~v~G~~~~GKssli~~l~~~~-~~~~~~t~~~~~-~~~~~~~~~~~~~Dt~G~~~~~~----------~~~---   84 (189)
T 2x77_A           20 DRKIRVLMLGLDNAGKTSILYRLHLGD-VVTTVPTVGVNL-ETLQYKNISFEVWDLGGQTGVRP----------YWR---   84 (189)
T ss_dssp             TSCEEEEEEEETTSSHHHHHHHTCCSC-CEEECSSTTCCE-EEEEETTEEEEEEEECCSSSSCC----------CCS---
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHcCC-CCCcCCCCceEE-EEEEECCEEEEEEECCCCHhHHH----------HHH---
Confidence            457899999999999999999998873 232222222111 12222367899999999743210          011   


Q ss_pred             hcccccceEEEEEeCCCCCCcCc-HHHHHHH-Hh---hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEE
Q 029158           99 STRVSLKRVCLLIDTKWGVKPRD-HELISLM-ER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMM  173 (198)
Q Consensus        99 ~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~-~~---~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  173 (198)
                      .....+|++++|+|+++...-.. ..++..+ ..   .+.|+++|+||+|+......++....+..  ........++++
T Consensus        85 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~--~~~~~~~~~~~~  162 (189)
T 2x77_A           85 CYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAASEAEIAEQLGV--SSIMNRTWTIVK  162 (189)
T ss_dssp             SSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCCHHHHHHHTTG--GGCCSSCEEEEE
T ss_pred             HHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCCHHHHHHHhCh--hhccCCceEEEE
Confidence            12235899999999986422221 2233333 22   36899999999999876433332222211  111223457999


Q ss_pred             eccCCCCChHHHHHHHHHhhcc
Q 029158          174 VSSKSGAGIRSLRTVLSKIARF  195 (198)
Q Consensus       174 ~Sa~~~~gi~~l~~~i~~~~~~  195 (198)
                      +||++++|+++++++|.+.+..
T Consensus       163 ~Sa~~~~gi~~l~~~l~~~i~~  184 (189)
T 2x77_A          163 SSSKTGDGLVEGMDWLVERLRE  184 (189)
T ss_dssp             CCTTTCTTHHHHHHHHHHHHHH
T ss_pred             ccCCCccCHHHHHHHHHHHHHh
Confidence            9999999999999999987754

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=99.90  E-value=6e-24  Score=149.58  Aligned_cols=157  Identities=16%  Similarity=0.148  Sum_probs=99.6

Q ss_pred             CCCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE--EEEe-C--CceEEEeCCCCccccchhHHHHHHHH
Q 029158           18 APDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FFKL-G--TKLCLVDLPGYGFAYAKEEVKDAWEE   92 (198)
Q Consensus        18 ~~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~--~~~~-~--~~~~iiDtpG~~~~~~~~~~~~~~~~   92 (198)
                      ....++|+++|.+|+|||||+++|++.. .. ....+.++.+..  .... +  ..+.+|||||....          ..
T Consensus         6 ~~~~~~i~v~G~~~~GKssl~~~l~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----------~~   73 (181)
T 3tw8_B            6 YDHLFKLLIIGDSGVGKSSLLLRFADNT-FS-GSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERF----------RT   73 (181)
T ss_dssp             CCEEEEEEEECCTTSCHHHHHHHHCSCC-----CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGC----------SS
T ss_pred             cCcceEEEEECCCCCCHHHHHHHHhcCC-CC-CccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhh----------hh
Confidence            3456899999999999999999999874 22 233333333322  2222 2  57999999995321          11


Q ss_pred             HHHHHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHhh--CCcEEEEEeccCCCCcHHHH-HHHHHHHHHHHhccCCC
Q 029158           93 LVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS--QTKYQVVLTKTDTVFPIDVA-RRAMQIEESLKANNSLV  168 (198)
Q Consensus        93 ~~~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~~--~~p~iiv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~  168 (198)
                      ....+   ...+|++++|+|+++...... ..++..+...  +.|+++|+||+|+....... .....+....      +
T Consensus        74 ~~~~~---~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~------~  144 (181)
T 3tw8_B           74 ITSTY---YRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDPERKVVETEDAYKFAGQM------G  144 (181)
T ss_dssp             CCGGG---GTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHH------T
T ss_pred             hHHHH---hccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCCchhcccCHHHHHHHHHHc------C
Confidence            11122   234899999999986322111 2244444433  58999999999987543211 1111111111      4


Q ss_pred             CCcEEeccCCCCChHHHHHHHHHhhcc
Q 029158          169 QPVMMVSSKSGAGIRSLRTVLSKIARF  195 (198)
Q Consensus       169 ~~v~~~Sa~~~~gi~~l~~~i~~~~~~  195 (198)
                      .+++++||++|+|+++++++|.+.+..
T Consensus       145 ~~~~~~Sa~~~~gi~~l~~~l~~~~~~  171 (181)
T 3tw8_B          145 IQLFETSAKENVNVEEMFNCITELVLR  171 (181)
T ss_dssp             CCEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            789999999999999999999887643

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=99.90  E-value=2.1e-23  Score=148.76  Aligned_cols=155  Identities=15%  Similarity=0.181  Sum_probs=98.9

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCccceeecC-------CCCceeEEEEEEe--------CCceEEEeCCCCccccch
Q 029158           19 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSD-------KPGLTQTINFFKL--------GTKLCLVDLPGYGFAYAK   83 (198)
Q Consensus        19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~-------~~~~t~~~~~~~~--------~~~~~iiDtpG~~~~~~~   83 (198)
                      ....+|+++|.+|+|||||++.+.+.. .....+       ...+|....+...        ...+.+|||||...-   
T Consensus        12 ~~~~ki~vvG~~~~GKssL~~~l~~~~-~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~---   87 (198)
T 3t1o_A           12 EINFKIVYYGPGLSGKTTNLKWIYSKV-PEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFY---   87 (198)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHHTS-CGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSC---
T ss_pred             ccccEEEEECCCCCCHHHHHHHHHhhc-cccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHH---
Confidence            456799999999999999998887652 111111       0112333332221        236899999996432   


Q ss_pred             hHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHH----HHHHHHh-----hCCcEEEEEeccCCCCcHHHHHHH
Q 029158           84 EEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHE----LISLMER-----SQTKYQVVLTKTDTVFPIDVARRA  154 (198)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~----~~~~~~~-----~~~p~iiv~nK~Dl~~~~~~~~~~  154 (198)
                             ......++.   .+|++++|+|++.+....+.+    +..++..     .+.|+++|+||+|+......++  
T Consensus        88 -------~~~~~~~~~---~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~~~~~~~--  155 (198)
T 3t1o_A           88 -------NASRKLILR---GVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDALPVEM--  155 (198)
T ss_dssp             -------SHHHHHHTT---TCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTTCCCHHH--
T ss_pred             -------HHHHHHHHh---cCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcccccCHHH--
Confidence                   222333443   389999999998432222222    2233332     3789999999999987533322  


Q ss_pred             HHHHHHHHhccCCCC-CcEEeccCCCCChHHHHHHHHHhhc
Q 029158          155 MQIEESLKANNSLVQ-PVMMVSSKSGAGIRSLRTVLSKIAR  194 (198)
Q Consensus       155 ~~~~~~~~~~~~~~~-~v~~~Sa~~~~gi~~l~~~i~~~~~  194 (198)
                        +++...   ..+. +++++||++|+|+++++++|.+.+.
T Consensus       156 --~~~~~~---~~~~~~~~~~Sa~~~~gv~~l~~~l~~~i~  191 (198)
T 3t1o_A          156 --VRAVVD---PEGKFPVLEAVATEGKGVFETLKEVSRLVL  191 (198)
T ss_dssp             --HHHHHC---TTCCSCEEECBGGGTBTHHHHHHHHHHHHH
T ss_pred             --HHHHHH---hcCCceEEEEecCCCcCHHHHHHHHHHHHH
Confidence              222222   2245 8999999999999999999988654

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=99.90  E-value=4.4e-23  Score=145.84  Aligned_cols=156  Identities=13%  Similarity=0.061  Sum_probs=100.1

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE---EEEe--CCceEEEeCCCCccccchhHHHHHHHHH
Q 029158           19 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEEL   93 (198)
Q Consensus        19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~---~~~~--~~~~~iiDtpG~~~~~~~~~~~~~~~~~   93 (198)
                      ....+|+++|.+|+|||||+++|++..   ....+.+++....   +...  ...+.+|||||....          ..+
T Consensus        16 ~~~~ki~v~G~~~~GKSsli~~l~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~----------~~~   82 (187)
T 2a9k_A           16 LALHKVIMVGSGGVGKSALTLQFMYDE---FVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY----------AAI   82 (187)
T ss_dssp             -CEEEEEEECSTTSSHHHHHHHHHHSC---CCCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCC----------HHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhhCC---CCCcCCCccceEEEEEEEECCEEEEEEEEECCCCccc----------HHH
Confidence            345799999999999999999999873   2333444433221   1111  247899999996432          223


Q ss_pred             HHHHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHh----hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCC
Q 029158           94 VKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLV  168 (198)
Q Consensus        94 ~~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~----~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  168 (198)
                      ...++..   +|++++|+|+++...... ..++..+..    .+.|+++|+||+|+.......  .+.+++....   .+
T Consensus        83 ~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~--~~~~~~~~~~---~~  154 (187)
T 2a9k_A           83 RDNYFRS---GEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVS--VEEAKNRAEQ---WN  154 (187)
T ss_dssp             HHHHHHH---CSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSC--HHHHHHHHHH---TT
T ss_pred             HHHHhcc---CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccC--HHHHHHHHHH---cC
Confidence            3334433   899999999986321111 223333332    268999999999997542211  1122222221   14


Q ss_pred             CCcEEeccCCCCChHHHHHHHHHhhcc
Q 029158          169 QPVMMVSSKSGAGIRSLRTVLSKIARF  195 (198)
Q Consensus       169 ~~v~~~Sa~~~~gi~~l~~~i~~~~~~  195 (198)
                      .+++++||+++.|+++++++|.+.+..
T Consensus       155 ~~~~~~Sa~~~~gi~~l~~~l~~~i~~  181 (187)
T 2a9k_A          155 VNYVETSAKTRANVDKVFFDLMREIRA  181 (187)
T ss_dssp             CEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             CeEEEeCCCCCCCHHHHHHHHHHHHHH
Confidence            689999999999999999999887643

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=99.90  E-value=7.5e-23  Score=146.89  Aligned_cols=156  Identities=17%  Similarity=0.119  Sum_probs=99.8

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEE---eCCceEEEeCCCCccccchhHHHHHHHHHHHH
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE   96 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~   96 (198)
                      ...+|+++|.+|+|||||+++|++........+..+.+.......   ....+.+|||||....          ......
T Consensus         7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~----------~~~~~~   76 (203)
T 1zbd_A            7 YMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERY----------RTITTA   76 (203)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGG----------HHHHHT
T ss_pred             eeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhh----------cchHHH
Confidence            457899999999999999999998742222222222222222222   1357899999997321          222233


Q ss_pred             HHhcccccceEEEEEeCCCCCCcC-cHHHHHHHHh---hCCcEEEEEeccCCCCcHHH-HHHHHHHHHHHHhccCCCCCc
Q 029158           97 YVSTRVSLKRVCLLIDTKWGVKPR-DHELISLMER---SQTKYQVVLTKTDTVFPIDV-ARRAMQIEESLKANNSLVQPV  171 (198)
Q Consensus        97 ~~~~~~~~d~vi~v~d~~~~~~~~-~~~~~~~~~~---~~~p~iiv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~v  171 (198)
                      ++   ..+|++++|+|+++..... ...++..+..   .+.|+++|+||+|+...... .+....+.+..      +.++
T Consensus        77 ~~---~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~------~~~~  147 (203)
T 1zbd_A           77 YY---RGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHL------GFEF  147 (203)
T ss_dssp             TG---GGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHH------TCEE
T ss_pred             hh---cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcccccCHHHHHHHHHHC------CCeE
Confidence            33   3489999999998632211 1234444444   36899999999999764321 11112222221      3689


Q ss_pred             EEeccCCCCChHHHHHHHHHhhc
Q 029158          172 MMVSSKSGAGIRSLRTVLSKIAR  194 (198)
Q Consensus       172 ~~~Sa~~~~gi~~l~~~i~~~~~  194 (198)
                      +++||++|.|+++++++|.+.+.
T Consensus       148 ~~~Sa~~~~gi~~l~~~l~~~i~  170 (203)
T 1zbd_A          148 FEASAKDNINVKQTFERLVDVIC  170 (203)
T ss_dssp             EECBTTTTBSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHH
Confidence            99999999999999999987653

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=99.90  E-value=3.6e-23  Score=145.30  Aligned_cols=154  Identities=17%  Similarity=0.121  Sum_probs=98.2

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE--EEEe---CCceEEEeCCCCccccchhHHHHHHHHHH
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELV   94 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~--~~~~---~~~~~iiDtpG~~~~~~~~~~~~~~~~~~   94 (198)
                      ...+|+++|.+|+|||||+++|++... . ....+.++.+..  ....   ...+.+|||||....          ....
T Consensus        13 ~~~~i~v~G~~~~GKssli~~l~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~----------~~~~   80 (179)
T 2y8e_A           13 RKFKLVFLGEQSVGKTSLITRFMYDSF-D-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF----------RSLI   80 (179)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSCC-C-SSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGG----------GGGS
T ss_pred             cceEEEEECCCCCCHHHHHHHHHcCCC-C-CCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHH----------HHHH
Confidence            347899999999999999999997631 1 122222232222  1112   247999999996331          1122


Q ss_pred             HHHHhcccccceEEEEEeCCCCCCcC-cHHHHHHHHh---hCCcEEEEEeccCCCCcHHH--HHHHHHHHHHHHhccCCC
Q 029158           95 KEYVSTRVSLKRVCLLIDTKWGVKPR-DHELISLMER---SQTKYQVVLTKTDTVFPIDV--ARRAMQIEESLKANNSLV  168 (198)
Q Consensus        95 ~~~~~~~~~~d~vi~v~d~~~~~~~~-~~~~~~~~~~---~~~p~iiv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~  168 (198)
                      ..++.   .+|++++|+|+++..... ...++..+..   .+.|+++|+||+|+......  ++.......    .   +
T Consensus        81 ~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~----~---~  150 (179)
T 2y8e_A           81 PSYIR---DSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKE----L---N  150 (179)
T ss_dssp             HHHHH---TCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCHHHHHHHHHH----H---T
T ss_pred             HHHhc---CCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCHHHHHHHHHH----c---C
Confidence            23333   389999999997632211 1234444432   36899999999999754321  121111111    1   4


Q ss_pred             CCcEEeccCCCCChHHHHHHHHHhhcc
Q 029158          169 QPVMMVSSKSGAGIRSLRTVLSKIARF  195 (198)
Q Consensus       169 ~~v~~~Sa~~~~gi~~l~~~i~~~~~~  195 (198)
                      .+++++||+++.|+++++++|.+.+..
T Consensus       151 ~~~~~~Sa~~~~~i~~l~~~l~~~~~~  177 (179)
T 2y8e_A          151 VMFIETSAKAGYNVKQLFRRVAAALPG  177 (179)
T ss_dssp             CEEEEEBTTTTBSHHHHHHHHHHTCC-
T ss_pred             CeEEEEeCCCCCCHHHHHHHHHHHHhh
Confidence            689999999999999999999987754

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=99.90  E-value=2.7e-23  Score=146.33  Aligned_cols=161  Identities=12%  Similarity=0.088  Sum_probs=93.8

Q ss_pred             CCCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEe----CCceEEEeCCCCccccchhHHHHHHHHH
Q 029158           18 APDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL----GTKLCLVDLPGYGFAYAKEEVKDAWEEL   93 (198)
Q Consensus        18 ~~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~----~~~~~iiDtpG~~~~~~~~~~~~~~~~~   93 (198)
                      .....+|+++|.+|+|||||+++|++........+..+.+........    ...+.+|||||...          +.. 
T Consensus         5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----------~~~-   73 (182)
T 1ky3_A            5 KKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQER----------FQS-   73 (182)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC------------------
T ss_pred             cCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChH----------hhh-
Confidence            345679999999999999999999987311111111111111111111    24689999999521          122 


Q ss_pred             HHHHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHh-------hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhcc
Q 029158           94 VKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER-------SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANN  165 (198)
Q Consensus        94 ~~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~-------~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~  165 (198)
                        ........+|++++|+|+++...... ..++..+..       .+.|+++|+||+|+....... ..+..++....  
T Consensus        74 --~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v-~~~~~~~~~~~--  148 (182)
T 1ky3_A           74 --LGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIV-SEKSAQELAKS--  148 (182)
T ss_dssp             -----CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCS-CHHHHHHHHHH--
T ss_pred             --hhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccC-CHHHHHHHHHh--
Confidence              22233445899999999986322222 233433332       468999999999996432100 00111111111  


Q ss_pred             CCCCCcEEeccCCCCChHHHHHHHHHhhc
Q 029158          166 SLVQPVMMVSSKSGAGIRSLRTVLSKIAR  194 (198)
Q Consensus       166 ~~~~~v~~~Sa~~~~gi~~l~~~i~~~~~  194 (198)
                      ....+++++||++|+|+++++++|.+.+.
T Consensus       149 ~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~  177 (182)
T 1ky3_A          149 LGDIPLFLTSAKNAINVDTAFEEIARSAL  177 (182)
T ss_dssp             TTSCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred             cCCCeEEEEecCCCCCHHHHHHHHHHHHH
Confidence            22578999999999999999999987653

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=99.90  E-value=3.4e-24  Score=168.93  Aligned_cols=163  Identities=25%  Similarity=0.284  Sum_probs=107.0

Q ss_pred             CCCCCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEE---eCC-ceEEEeCCCCccccchhHHHHHHH
Q 029158           16 FPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGT-KLCLVDLPGYGFAYAKEEVKDAWE   91 (198)
Q Consensus        16 ~~~~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~---~~~-~~~iiDtpG~~~~~~~~~~~~~~~   91 (198)
                      .+....++|+++|.+|+|||||+++|++. ........+++|.+.....   .+. .+.+|||||+.+........   .
T Consensus        29 ~~~~~~~kI~IvG~~~vGKSTLin~L~~~-~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~---~  104 (423)
T 3qq5_A           29 PDAGFRRYIVVAGRRNVGKSSFMNALVGQ-NVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLR---V  104 (423)
T ss_dssp             ---CCCEEEEEECSCSTTTTTTTTSSCC--------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCCC---H
T ss_pred             CCCCCCEEEEEECCCCCCHHHHHHHHHcC-CCCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccchhHHH---H
Confidence            45567889999999999999999999998 4445667777776643222   233 79999999986421110000   0


Q ss_pred             HHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCc
Q 029158           92 ELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPV  171 (198)
Q Consensus        92 ~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v  171 (198)
                      .....++   ..+|++++|+|+  +....+..++..+...+.|+++|+||+|+......     ...+.+.  ...+.++
T Consensus       105 ~~~~~~l---~~aD~vllVvD~--~~~~~~~~~l~~l~~~~~piIvV~NK~Dl~~~~~~-----~~~~~l~--~~~g~~v  172 (423)
T 3qq5_A          105 EKARRVF---YRADCGILVTDS--APTPYEDDVVNLFKEMEIPFVVVVNKIDVLGEKAE-----ELKGLYE--SRYEAKV  172 (423)
T ss_dssp             HHHHHHH---TSCSEEEEECSS--SCCHHHHHHHHHHHHTTCCEEEECCCCTTTTCCCT-----HHHHHSS--CCTTCCC
T ss_pred             HHHHHHH---hcCCEEEEEEeC--CChHHHHHHHHHHHhcCCCEEEEEeCcCCCCccHH-----HHHHHHH--HHcCCCE
Confidence            1112233   348999999999  45677788888888889999999999999876543     1111111  1235799


Q ss_pred             EEeccCCCCChHHHHHHHHHhhc
Q 029158          172 MMVSSKSGAGIRSLRTVLSKIAR  194 (198)
Q Consensus       172 ~~~Sa~~~~gi~~l~~~i~~~~~  194 (198)
                      +++||++|+|+++++++|.+.++
T Consensus       173 ~~vSAktg~gI~eL~~~L~~~l~  195 (423)
T 3qq5_A          173 LLVSALQKKGFDDIGKTISEILP  195 (423)
T ss_dssp             CCCSSCCTTSTTTHHHHHHHHSC
T ss_pred             EEEECCCCCCHHHHHHHHHHhhh
Confidence            99999999999999999998873

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=99.90  E-value=5.8e-24  Score=151.73  Aligned_cols=158  Identities=13%  Similarity=-0.038  Sum_probs=99.8

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEE---EEEE--eCCceEEEeCCCCccccchhHHHHHHHHH
Q 029158           19 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---NFFK--LGTKLCLVDLPGYGFAYAKEEVKDAWEEL   93 (198)
Q Consensus        19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~---~~~~--~~~~~~iiDtpG~~~~~~~~~~~~~~~~~   93 (198)
                      ....+|+++|.+|+|||||+++|++..   ....+.+++...   .+..  ....+.+|||||....          ...
T Consensus        21 ~~~~ki~~vG~~~~GKSsl~~~l~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----------~~~   87 (194)
T 3reg_A           21 KKALKIVVVGDGAVGKTCLLLAFSKGE---IPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEY----------DRL   87 (194)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSC---CCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGG----------TTT
T ss_pred             ceeeEEEEECcCCCCHHHHHHHHhcCC---CCCccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHH----------HHH
Confidence            345799999999999999999999874   223333333221   1111  2345799999995321          111


Q ss_pred             HHHHHhcccccceEEEEEeCCCCCCcCc--HHHHHHHHhh--CCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCC
Q 029158           94 VKEYVSTRVSLKRVCLLIDTKWGVKPRD--HELISLMERS--QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQ  169 (198)
Q Consensus        94 ~~~~~~~~~~~d~vi~v~d~~~~~~~~~--~~~~~~~~~~--~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  169 (198)
                      .   ......+|++++|+|+++......  ..++..+...  +.|+++|+||+|+..........+..++.....   +.
T Consensus        88 ~---~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~---~~  161 (194)
T 3reg_A           88 R---PLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKL---GC  161 (194)
T ss_dssp             G---GGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHH---TC
T ss_pred             h---HhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccCCCCcccHHHHHHHHHhc---CC
Confidence            1   122334899999999986322222  2344555544  689999999999975321111111222222211   34


Q ss_pred             C-cEEeccCCCCChHHHHHHHHHhhcc
Q 029158          170 P-VMMVSSKSGAGIRSLRTVLSKIARF  195 (198)
Q Consensus       170 ~-v~~~Sa~~~~gi~~l~~~i~~~~~~  195 (198)
                      + ++++||++|+|+++++++|.+.+..
T Consensus       162 ~~~~~~Sa~~~~gi~~l~~~l~~~i~~  188 (194)
T 3reg_A          162 VAYIEASSVAKIGLNEVFEKSVDCIFS  188 (194)
T ss_dssp             SCEEECBTTTTBSHHHHHHHHHHHHHC
T ss_pred             CEEEEeecCCCCCHHHHHHHHHHHHHh
Confidence            5 9999999999999999999887643

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.90  E-value=3.8e-23  Score=149.35  Aligned_cols=157  Identities=18%  Similarity=0.193  Sum_probs=98.2

Q ss_pred             CCCCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEE--EEEEe-C--CceEEEeCCCCccccchhHHHHHHH
Q 029158           17 PAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI--NFFKL-G--TKLCLVDLPGYGFAYAKEEVKDAWE   91 (198)
Q Consensus        17 ~~~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~--~~~~~-~--~~~~iiDtpG~~~~~~~~~~~~~~~   91 (198)
                      +....++|+++|.+|+|||||+++|++....  ....+.++.+.  ..... +  ..+.+|||||....          .
T Consensus        16 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~----------~   83 (213)
T 3cph_A           16 SYDSIMKILLIGDSGVGKSCLLVRFVEDKFN--PSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERF----------R   83 (213)
T ss_dssp             ----CEEEEEECSTTSSHHHHHHHHHHCCCC--CSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGG----------T
T ss_pred             CCCcceEEEEECCCCCCHHHHHHHHHhCCCC--cccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHH----------H
Confidence            3445789999999999999999999987321  12222222222  12222 2  57999999996321          1


Q ss_pred             HHHHHHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHhh---CCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCC
Q 029158           92 ELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS---QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSL  167 (198)
Q Consensus        92 ~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~~---~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~  167 (198)
                      .....++.   .+|++++|+|+........ ..++..+...   +.|+++|+||+|+.......+....+.+..      
T Consensus        84 ~~~~~~~~---~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~------  154 (213)
T 3cph_A           84 TITTAYYR---GAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKEL------  154 (213)
T ss_dssp             CCCHHHHT---TCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCSSCCSCHHHHHHHHHHH------
T ss_pred             HHHHHHhc---cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcccccCHHHHHHHHHHc------
Confidence            11223333   3899999999986322112 2344444432   689999999999953221111122222221      


Q ss_pred             CCCcEEeccCCCCChHHHHHHHHHhhc
Q 029158          168 VQPVMMVSSKSGAGIRSLRTVLSKIAR  194 (198)
Q Consensus       168 ~~~v~~~Sa~~~~gi~~l~~~i~~~~~  194 (198)
                      +.+++++||+++.|+++++++|.+.+.
T Consensus       155 ~~~~~~~Sa~~~~gi~~l~~~l~~~~~  181 (213)
T 3cph_A          155 GIPFIESSAKNDDNVNEIFFTLAKLIQ  181 (213)
T ss_dssp             TCCEEECBTTTTBSSHHHHHHHHHHHH
T ss_pred             CCEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            368999999999999999999987654

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=99.90  E-value=3.6e-23  Score=144.07  Aligned_cols=157  Identities=14%  Similarity=0.062  Sum_probs=99.0

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEE---eCCceEEEeCCCCccccchhHHHHHHHHHHHH
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE   96 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~   96 (198)
                      ...+|+++|.+|+|||||+++|++........+..+++.......   .+..+.+|||||....          ......
T Consensus         5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~----------~~~~~~   74 (170)
T 1r2q_A            5 CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERY----------HSLAPM   74 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGG----------GGGHHH
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHh----------hhhhHH
Confidence            346899999999999999999998632221222222222222222   2457899999996331          122233


Q ss_pred             HHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHhh---CCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcE
Q 029158           97 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS---QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVM  172 (198)
Q Consensus        97 ~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~~---~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~  172 (198)
                      ++.   .+|++++|+|+++...... ..++..+...   +.|+++|+||+|+.......  .+..++....   .+.+++
T Consensus        75 ~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~--~~~~~~~~~~---~~~~~~  146 (170)
T 1r2q_A           75 YYR---GAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVD--FQEAQSYADD---NSLLFM  146 (170)
T ss_dssp             HHT---TCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSC--HHHHHHHHHH---TTCEEE
T ss_pred             hcc---CCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccccC--HHHHHHHHHH---cCCeEE
Confidence            333   3899999999986322111 2334444432   68999999999996532211  0111111111   247899


Q ss_pred             EeccCCCCChHHHHHHHHHhhc
Q 029158          173 MVSSKSGAGIRSLRTVLSKIAR  194 (198)
Q Consensus       173 ~~Sa~~~~gi~~l~~~i~~~~~  194 (198)
                      ++||++|+|+++++++|.+.+.
T Consensus       147 ~~Sa~~g~gi~~l~~~i~~~~~  168 (170)
T 1r2q_A          147 ETSAKTSMNVNEIFMAIAKKLP  168 (170)
T ss_dssp             ECCTTTCTTHHHHHHHHHHTSC
T ss_pred             EEeCCCCCCHHHHHHHHHHHHh
Confidence            9999999999999999988764

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.90  E-value=1e-22  Score=145.58  Aligned_cols=155  Identities=14%  Similarity=0.045  Sum_probs=98.2

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeE---EEEEE--eCCceEEEeCCCCccccchhHHHHHHHHH
Q 029158           19 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT---INFFK--LGTKLCLVDLPGYGFAYAKEEVKDAWEEL   93 (198)
Q Consensus        19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~---~~~~~--~~~~~~iiDtpG~~~~~~~~~~~~~~~~~   93 (198)
                      ....+|+++|.+|+|||||+++|++...   ...+.++...   .....  ....+.+|||||....          ..+
T Consensus         6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~----------~~~   72 (199)
T 2gf0_A            6 SNDYRVVVFGAGGVGKSSLVLRFVKGTF---RDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQF----------PAM   72 (199)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHSCC---CCTTSCCCCEEEEEEEEETTEEEEEEEEECCGGGSC----------HHH
T ss_pred             CCeeEEEEECCCCCcHHHHHHHHHcCCC---CCcccCccccceeEEEEECCEEEEEEEEeCCChHHh----------HHH
Confidence            4568999999999999999999998732   1112222111   11111  1347899999996432          222


Q ss_pred             HHHHHhcccccceEEEEEeCCCCCC-cCcHHHHHHHHh-----hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCC
Q 029158           94 VKEYVSTRVSLKRVCLLIDTKWGVK-PRDHELISLMER-----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSL  167 (198)
Q Consensus        94 ~~~~~~~~~~~d~vi~v~d~~~~~~-~~~~~~~~~~~~-----~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~  167 (198)
                      ...++..   +|++++|+|+++... .....++..+..     .+.|+++|+||+|+.......+....+....      
T Consensus        73 ~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~------  143 (199)
T 2gf0_A           73 QRLSISK---GHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTREAQAVAQEW------  143 (199)
T ss_dssp             HHHHHHH---CSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCSSCHHHHHHHHHHH------
T ss_pred             HHHhhcc---CCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccccCHHHHHHHHHHh------
Confidence            3333333   899999999986321 112233433332     2689999999999975321111112222111      


Q ss_pred             CCCcEEeccCCCCChHHHHHHHHHhhcc
Q 029158          168 VQPVMMVSSKSGAGIRSLRTVLSKIARF  195 (198)
Q Consensus       168 ~~~v~~~Sa~~~~gi~~l~~~i~~~~~~  195 (198)
                      +.+++++||++|+|+++++++|.+.+..
T Consensus       144 ~~~~~~~Sa~~~~gi~~l~~~l~~~~~~  171 (199)
T 2gf0_A          144 KCAFMETSAKMNYNVKELFQELLTLETR  171 (199)
T ss_dssp             TCEEEECBTTTTBSHHHHHHHHHHHCSS
T ss_pred             CCeEEEEecCCCCCHHHHHHHHHHHHhh
Confidence            3689999999999999999999987643

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=99.90  E-value=8.8e-23  Score=141.38  Aligned_cols=151  Identities=17%  Similarity=0.159  Sum_probs=97.3

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEE---EEEE--eCCceEEEeCCCCccccchhHHHHHHHHHHHH
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---NFFK--LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE   96 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~---~~~~--~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~   96 (198)
                      .+|+++|.+|+|||||++++++..   ....+.+++...   .+..  ....+.+|||||....          ......
T Consensus         4 ~~i~v~G~~~~GKssl~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~----------~~~~~~   70 (166)
T 2ce2_X            4 YKLVVVGAGGVGKSALTIQLIQNH---FVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY----------SAMRDQ   70 (166)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSS---CCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSC----------CHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCc---CccccCCccceEEEEEEEECCEEEEEEEEECCCchhh----------hHHHHH
Confidence            579999999999999999999873   122233333221   1111  1345899999996432          122223


Q ss_pred             HHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHhh----CCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCc
Q 029158           97 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS----QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPV  171 (198)
Q Consensus        97 ~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~~----~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v  171 (198)
                      ++..   +|++++++|+++...... ..++..+...    +.|+++|+||+|+.......+....+.+..      +.++
T Consensus        71 ~~~~---~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~------~~~~  141 (166)
T 2ce2_X           71 YMRT---GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAARTVESRQAQDLARSY------GIPY  141 (166)
T ss_dssp             HHHH---CSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHHH------TCCE
T ss_pred             hhcc---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhcccCHHHHHHHHHHc------CCeE
Confidence            3333   899999999975321111 2334444332    699999999999976322222222222221      3689


Q ss_pred             EEeccCCCCChHHHHHHHHHhhc
Q 029158          172 MMVSSKSGAGIRSLRTVLSKIAR  194 (198)
Q Consensus       172 ~~~Sa~~~~gi~~l~~~i~~~~~  194 (198)
                      +++||++|.|+++++++|.+.+.
T Consensus       142 ~~~Sa~~~~gi~~l~~~l~~~~~  164 (166)
T 2ce2_X          142 IETSAKTRQGVEDAFYTLVREIR  164 (166)
T ss_dssp             EEECTTTCTTHHHHHHHHHHHHH
T ss_pred             EEecCCCCCCHHHHHHHHHHHHH
Confidence            99999999999999999988764

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=99.90  E-value=2.4e-23  Score=148.20  Aligned_cols=154  Identities=18%  Similarity=0.157  Sum_probs=98.3

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHHHHh
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS   99 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~   99 (198)
                      ...+|+++|++|+|||||++++++.. .....+..+.+. ..+...+..+.+|||||....          ......+  
T Consensus        22 ~~~ki~~vG~~~vGKSsli~~l~~~~-~~~~~~t~~~~~-~~~~~~~~~~~i~Dt~G~~~~----------~~~~~~~--   87 (190)
T 1m2o_B           22 KHGKLLFLGLDNAGKTTLLHMLKNDR-LATLQPTWHPTS-EELAIGNIKFTTFDLGGHIQA----------RRLWKDY--   87 (190)
T ss_dssp             --CEEEEEESTTSSHHHHHHHHHHSC-CCCCCCCCSCEE-EEEEETTEEEEEEECCCSGGG----------TTSGGGG--
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcCC-CCccccCCCCCe-EEEEECCEEEEEEECCCCHHH----------HHHHHHH--
Confidence            45689999999999999999999873 332222222221 223333578999999997432          1111122  


Q ss_pred             cccccceEEEEEeCCCCCCcCc-HHHHHHHH----hhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhc---------c
Q 029158          100 TRVSLKRVCLLIDTKWGVKPRD-HELISLME----RSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKAN---------N  165 (198)
Q Consensus       100 ~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~----~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~---------~  165 (198)
                       ...+|++++|+|+++..+-.. ..++..+.    ..+.|+++|+||+|+......++    +++.+...         .
T Consensus        88 -~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~----~~~~~~~~~~~~~~~~~~  162 (190)
T 1m2o_B           88 -FPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAE----LRSALGLLNTTGSQRIEG  162 (190)
T ss_dssp             -CTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHH----HHHHTTCSSCCC---CCS
T ss_pred             -HhcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcCCCCHHH----HHHHhCCccccccccccc
Confidence             235899999999986422111 22333332    24689999999999986433222    22222211         1


Q ss_pred             CCCCCcEEeccCCCCChHHHHHHHHHh
Q 029158          166 SLVQPVMMVSSKSGAGIRSLRTVLSKI  192 (198)
Q Consensus       166 ~~~~~v~~~Sa~~~~gi~~l~~~i~~~  192 (198)
                      ....+++++||++|+|+++++++|.+.
T Consensus       163 ~~~~~~~~~Sa~~g~gi~~l~~~l~~~  189 (190)
T 1m2o_B          163 QRPVEVFMCSVVMRNGYLEAFQWLSQY  189 (190)
T ss_dssp             SCCEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred             cceEEEEEeECCcCCCHHHHHHHHHhh
Confidence            234679999999999999999999865

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=99.90  E-value=1.4e-23  Score=147.63  Aligned_cols=158  Identities=15%  Similarity=0.138  Sum_probs=101.1

Q ss_pred             CCCCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE--EEEe---CCceEEEeCCCCccccchhHHHHHHH
Q 029158           17 PAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FFKL---GTKLCLVDLPGYGFAYAKEEVKDAWE   91 (198)
Q Consensus        17 ~~~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~--~~~~---~~~~~iiDtpG~~~~~~~~~~~~~~~   91 (198)
                      ++...++|+++|.+|+|||||+++|++..   ....+.+++....  ....   ...+.+|||||....          .
T Consensus         5 ~~~~~~~i~v~G~~~~GKssli~~l~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~----------~   71 (181)
T 2fn4_A            5 PPSETHKLVVVGGGGVGKSALTIQFIQSY---FVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEF----------G   71 (181)
T ss_dssp             CSSCEEEEEEEECTTSSHHHHHHHHHHSS---CCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTT----------S
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHHhCc---CccccCCCcCceEEEEEEECCEEEEEEEEECCCchhh----------H
Confidence            44567899999999999999999999873   2344444443321  1122   247899999996432          1


Q ss_pred             HHHHHHHhcccccceEEEEEeCCCCCCcCc-HHHHHHH-H---hhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccC
Q 029158           92 ELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLM-E---RSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNS  166 (198)
Q Consensus        92 ~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~-~---~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~  166 (198)
                      .+...++..   +|++++|+|+++...... ..++..+ .   ..+.|+++|+||+|+........  +...+....   
T Consensus        72 ~~~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~--~~~~~~~~~---  143 (181)
T 2fn4_A           72 AMREQYMRA---GHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPR--SEASAFGAS---  143 (181)
T ss_dssp             CCHHHHHHH---CSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCH--HHHHHHHHH---
T ss_pred             HHHHHHHhh---CCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCH--HHHHHHHHH---
Confidence            112233333   899999999986211111 2233333 2   23689999999999976432211  111111111   


Q ss_pred             CCCCcEEeccCCCCChHHHHHHHHHhhcc
Q 029158          167 LVQPVMMVSSKSGAGIRSLRTVLSKIARF  195 (198)
Q Consensus       167 ~~~~v~~~Sa~~~~gi~~l~~~i~~~~~~  195 (198)
                      .+.+++++||++|+|+++++++|.+.+..
T Consensus       144 ~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~  172 (181)
T 2fn4_A          144 HHVAYFEASAKLRLNVDEAFEQLVRAVRK  172 (181)
T ss_dssp             TTCEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             cCCeEEEecCCCCCCHHHHHHHHHHHHHH
Confidence            14789999999999999999999887643

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=99.90  E-value=3.8e-23  Score=144.09  Aligned_cols=155  Identities=15%  Similarity=0.055  Sum_probs=95.4

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEE--EEEEe---CCceEEEeCCCCccccchhHHHHHHHHHH
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI--NFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELV   94 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~--~~~~~---~~~~~iiDtpG~~~~~~~~~~~~~~~~~~   94 (198)
                      ...+|+++|.+|+|||||++++++....  ....+..+.+.  .....   ...+.+|||||....          ..  
T Consensus         5 ~~~~i~v~G~~~~GKssli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~----------~~--   70 (170)
T 1z08_A            5 YSFKVVLLGEGCVGKTSLVLRYCENKFN--DKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERF----------HA--   70 (170)
T ss_dssp             EEEEEEEECCTTSCHHHHHHHHHHCCCC--SSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-----------------
T ss_pred             cceEEEEECcCCCCHHHHHHHHHcCCCC--cCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhh----------hh--
Confidence            4578999999999999999999987311  11112222221  11222   246899999995221          11  


Q ss_pred             HHHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHh---hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCC
Q 029158           95 KEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQP  170 (198)
Q Consensus        95 ~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~---~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (198)
                       ........+|++++|+|+++...... ..++..+..   .+.|+++|+||+|+.......  .+..++....   .+.+
T Consensus        71 -~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~--~~~~~~~~~~---~~~~  144 (170)
T 1z08_A           71 -LGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVS--IQEAESYAES---VGAK  144 (170)
T ss_dssp             ---CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSC--HHHHHHHHHH---TTCE
T ss_pred             -hHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccccC--HHHHHHHHHH---cCCe
Confidence             11223345899999999986322111 223333432   468999999999997542211  0111222221   1478


Q ss_pred             cEEeccCCCCChHHHHHHHHHhhc
Q 029158          171 VMMVSSKSGAGIRSLRTVLSKIAR  194 (198)
Q Consensus       171 v~~~Sa~~~~gi~~l~~~i~~~~~  194 (198)
                      ++++||++|.|+++++++|.+.+.
T Consensus       145 ~~~~Sa~~~~gi~~l~~~l~~~~~  168 (170)
T 1z08_A          145 HYHTSAKQNKGIEELFLDLCKRMI  168 (170)
T ss_dssp             EEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred             EEEecCCCCCCHHHHHHHHHHHHh
Confidence            999999999999999999988653

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=99.90  E-value=5.2e-23  Score=149.14  Aligned_cols=154  Identities=16%  Similarity=0.145  Sum_probs=96.6

Q ss_pred             CCCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCcee-EE---EEEE--eCCceEEEeCCCCccccchhHHHHHHH
Q 029158           18 APDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQ-TI---NFFK--LGTKLCLVDLPGYGFAYAKEEVKDAWE   91 (198)
Q Consensus        18 ~~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~-~~---~~~~--~~~~~~iiDtpG~~~~~~~~~~~~~~~   91 (198)
                      |....+|+++|.+|+|||||+++++....   ...+.+|.. +.   ....  ....+.+|||+|...-          .
T Consensus        10 P~k~~KivlvGd~~VGKTsLi~r~~~~~f---~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~----------~   76 (216)
T 4dkx_A           10 PLRKFKLVFLGEQSVGKTSLITRFMYDSF---DNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERF----------R   76 (216)
T ss_dssp             ---CEEEEEECSTTSSHHHHHHHHHHSCC---C----------CEEEEEECSSCEEEEEEECCSCTTTC----------G
T ss_pred             CCCcEEEEEECcCCcCHHHHHHHHHhCCC---CCCcCCccceEEEEEEEEecceEEEEEEEECCCchhh----------h
Confidence            33567999999999999999999998742   222222211 11   1111  1356889999996321          3


Q ss_pred             HHHHHHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHh---hCCcEEEEEeccCCCCcHH--HHHHHHHHHHHHHhcc
Q 029158           92 ELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPID--VARRAMQIEESLKANN  165 (198)
Q Consensus        92 ~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~---~~~p~iiv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~  165 (198)
                      .+...|+..   ++++++|+|.....+-.. ..++..+..   .+.|+++|+||+|+.....  .++. ..+.+..    
T Consensus        77 ~l~~~~~~~---a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V~~~e~-~~~a~~~----  148 (216)
T 4dkx_A           77 SLIPSYIRD---SAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEG-ERKAKEL----  148 (216)
T ss_dssp             GGHHHHHTT---CSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHH-HHHHHHH----
T ss_pred             hHHHHHhcc---ccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcCcccHHHH-hhHHHHh----
Confidence            344455554   899999999986322222 234444432   3689999999999976432  1221 1222221    


Q ss_pred             CCCCCcEEeccCCCCChHHHHHHHHHhhc
Q 029158          166 SLVQPVMMVSSKSGAGIRSLRTVLSKIAR  194 (198)
Q Consensus       166 ~~~~~v~~~Sa~~~~gi~~l~~~i~~~~~  194 (198)
                        +++++++||++|+|++++|+.|.+.+.
T Consensus       149 --~~~~~e~SAktg~nV~e~F~~i~~~i~  175 (216)
T 4dkx_A          149 --NVMFIETSAKAGYNVKQLFRRVAAALP  175 (216)
T ss_dssp             --TCEEEEEBTTTTBSHHHHHHHHHHHC-
T ss_pred             --CCeeEEEeCCCCcCHHHHHHHHHHHHH
Confidence              478999999999999999999987664

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=99.90  E-value=1.9e-23  Score=150.34  Aligned_cols=157  Identities=14%  Similarity=0.009  Sum_probs=100.1

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE---EEEeC--CceEEEeCCCCccccchhHHHHHHHHH
Q 029158           19 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLG--TKLCLVDLPGYGFAYAKEEVKDAWEEL   93 (198)
Q Consensus        19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~---~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~~~   93 (198)
                      ....+|+++|.+|+|||||++++++..   ....+.+++.+..   +...+  ..+.+|||||....          ...
T Consensus        28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~----------~~~   94 (204)
T 4gzl_A           28 GQAIKCVVVGDGAVGKTCLLISYTTNA---FPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDY----------DRL   94 (204)
T ss_dssp             --CEEEEEEESTTSSHHHHHHHHHHSC---CCC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGG----------TTT
T ss_pred             CCeEEEEEECcCCCCHHHHHHHHHhCC---CCCCcCCeecceeEEEEEECCEEEEEEEEECCCchhh----------HHH
Confidence            456799999999999999999999763   2333444443322   11122  35669999997321          111


Q ss_pred             HHHHHhcccccceEEEEEeCCCCCCcCcH--HHHHHHHhh--CCcEEEEEeccCCCCcHHHHHHH----------HHHHH
Q 029158           94 VKEYVSTRVSLKRVCLLIDTKWGVKPRDH--ELISLMERS--QTKYQVVLTKTDTVFPIDVARRA----------MQIEE  159 (198)
Q Consensus        94 ~~~~~~~~~~~d~vi~v~d~~~~~~~~~~--~~~~~~~~~--~~p~iiv~nK~Dl~~~~~~~~~~----------~~~~~  159 (198)
                      .   ......+|++++|+|+++.......  .++..+...  +.|+++|+||+|+.......+..          +...+
T Consensus        95 ~---~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~  171 (204)
T 4gzl_A           95 R---PLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLA  171 (204)
T ss_dssp             G---GGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHH
T ss_pred             H---HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhccchhhhhhhhccccccccHHHHHH
Confidence            1   1223458999999999863322222  355555554  79999999999998765432221          11111


Q ss_pred             HHHhccCCCCCcEEeccCCCCChHHHHHHHHHhh
Q 029158          160 SLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA  193 (198)
Q Consensus       160 ~~~~~~~~~~~v~~~Sa~~~~gi~~l~~~i~~~~  193 (198)
                      .....  ...+++++||++|+|+++++++|.+.+
T Consensus       172 ~~~~~--~~~~~~~~SA~~g~gi~~l~~~l~~~~  203 (204)
T 4gzl_A          172 MAKEI--GAVKYLECSALTQRGLKTVFDEAIRAV  203 (204)
T ss_dssp             HHHHT--TCSEEEECCTTTCTTHHHHHHHHHHTT
T ss_pred             HHHhc--CCcEEEEeeCCCCCCHHHHHHHHHHHh
Confidence            21111  124699999999999999999998754

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.90  E-value=1.7e-23  Score=149.22  Aligned_cols=158  Identities=12%  Similarity=0.019  Sum_probs=100.8

Q ss_pred             CCCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEE---EEEEeC--CceEEEeCCCCccccchhHHHHHHHH
Q 029158           18 APDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---NFFKLG--TKLCLVDLPGYGFAYAKEEVKDAWEE   92 (198)
Q Consensus        18 ~~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~---~~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~~   92 (198)
                      +....+|+++|.+|+|||||+++|++..   ....+.+++.+.   .+...+  ..+.+|||||....          ..
T Consensus        15 ~~~~~ki~v~G~~~~GKssli~~l~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~----------~~   81 (194)
T 2atx_A           15 GALMLKCVVVGDGAVGKTCLLMSYANDA---FPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDY----------DR   81 (194)
T ss_dssp             EEEEEEEEEEECTTSSHHHHHHHHHHSS---CCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSS----------TT
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHhcCC---CCCCCCCcccceeEEEEEECCEEEEEEEEECCCCcch----------hH
Confidence            3456799999999999999999999873   223333333221   121122  56899999997432          11


Q ss_pred             HHHHHHhcccccceEEEEEeCCCCCCcCc--HHHHHHHHhh--CCcEEEEEeccCCCCcHHHHHH----------HHHHH
Q 029158           93 LVKEYVSTRVSLKRVCLLIDTKWGVKPRD--HELISLMERS--QTKYQVVLTKTDTVFPIDVARR----------AMQIE  158 (198)
Q Consensus        93 ~~~~~~~~~~~~d~vi~v~d~~~~~~~~~--~~~~~~~~~~--~~p~iiv~nK~Dl~~~~~~~~~----------~~~~~  158 (198)
                      ....   ....+|++++|+|+++......  ..++..+...  +.|+++|+||+|+.........          .+...
T Consensus        82 ~~~~---~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~  158 (194)
T 2atx_A           82 LRPL---SYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQ  158 (194)
T ss_dssp             TGGG---GCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHH
T ss_pred             HHHH---hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcccccchhhcccccCcccCHHHHH
Confidence            1112   2334899999999986322112  2355556554  7999999999999875422110          11111


Q ss_pred             HHHHhccCCCCCcEEeccCCCCChHHHHHHHHHhh
Q 029158          159 ESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA  193 (198)
Q Consensus       159 ~~~~~~~~~~~~v~~~Sa~~~~gi~~l~~~i~~~~  193 (198)
                      +..... + ..+++++||++|+|+++++++|.+.+
T Consensus       159 ~~~~~~-~-~~~~~~~Sa~~g~gi~~l~~~l~~~i  191 (194)
T 2atx_A          159 KLAKEI-G-ACCYVECSALTQKGLKTVFDEAIIAI  191 (194)
T ss_dssp             HHHHHH-T-CSCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             HHHHHc-C-CcEEEEeeCCCCCCHHHHHHHHHHHH
Confidence            211111 1 23899999999999999999998765

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=99.90  E-value=3.8e-23  Score=143.74  Aligned_cols=154  Identities=15%  Similarity=0.083  Sum_probs=97.0

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEE---eCCceEEEeCCCCccccchhHHHHHHHHHHHH
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE   96 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~   96 (198)
                      ...+|+++|++|+|||||+++|++........+..+.+.......   ....+.+|||||....          ......
T Consensus         4 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~----------~~~~~~   73 (168)
T 1z2a_A            4 VAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEF----------DAITKA   73 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGT----------TCCCHH
T ss_pred             eeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhH----------HHHHHH
Confidence            457899999999999999999998731111111111111111111   2347999999995321          111223


Q ss_pred             HHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHh--hCCcEEEEEeccCCCCcHH--HHHHHHHHHHHHHhccCCCCCc
Q 029158           97 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER--SQTKYQVVLTKTDTVFPID--VARRAMQIEESLKANNSLVQPV  171 (198)
Q Consensus        97 ~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~v  171 (198)
                      ++.   .+|++++|+|+++...... ..++..+..  .+.|+++|+||+|+.....  .++. ..+.+..      +.++
T Consensus        74 ~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~-~~~~~~~------~~~~  143 (168)
T 1z2a_A           74 YYR---GAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLDDSCIKNEEA-EGLAKRL------KLRF  143 (168)
T ss_dssp             HHT---TCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGGGGCSSCHHHH-HHHHHHH------TCEE
T ss_pred             Hhc---CCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccCcccccCHHHH-HHHHHHc------CCeE
Confidence            333   3899999999986322122 234444433  2799999999999975322  1111 1222211      3689


Q ss_pred             EEeccCCCCChHHHHHHHHHhh
Q 029158          172 MMVSSKSGAGIRSLRTVLSKIA  193 (198)
Q Consensus       172 ~~~Sa~~~~gi~~l~~~i~~~~  193 (198)
                      +++||+++.|+++++++|.+.+
T Consensus       144 ~~~Sa~~~~~i~~l~~~l~~~~  165 (168)
T 1z2a_A          144 YRTSVKEDLNVSEVFKYLAEKH  165 (168)
T ss_dssp             EECBTTTTBSSHHHHHHHHHHH
T ss_pred             EEEecCCCCCHHHHHHHHHHHH
Confidence            9999999999999999998765

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=99.90  E-value=2.1e-23  Score=147.84  Aligned_cols=156  Identities=8%  Similarity=-0.019  Sum_probs=98.4

Q ss_pred             CCCCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEE--EEEE--eCCceEEEeCCCCccccchhHHHHHHHH
Q 029158           17 PAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI--NFFK--LGTKLCLVDLPGYGFAYAKEEVKDAWEE   92 (198)
Q Consensus        17 ~~~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~--~~~~--~~~~~~iiDtpG~~~~~~~~~~~~~~~~   92 (198)
                      ++....+|+++|.+|+|||||++++++....   ..+.++....  .+..  ....+.+|||||....          . 
T Consensus        16 ~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~---~~~~~t~~~~~~~~~~~~~~~~l~i~Dt~G~~~~----------~-   81 (184)
T 3ihw_A           16 FQGPELKVGIVGNLSSGKSALVHRYLTGTYV---QEESPEGGRFKKEIVVDGQSYLLLIRDEGGPPEL----------Q-   81 (184)
T ss_dssp             CCCCEEEEEEECCTTSCHHHHHHHHHHSSCC---CCCCTTCEEEEEEEEETTEEEEEEEEECSSSCCH----------H-
T ss_pred             CCCCeeEEEEECCCCCCHHHHHHHHhcCCCC---CCcCCCcceEEEEEEECCEEEEEEEEECCCChhh----------h-
Confidence            3445679999999999999999999987321   2222222211  1111  1356788999996321          1 


Q ss_pred             HHHHHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHh----hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCC
Q 029158           93 LVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSL  167 (198)
Q Consensus        93 ~~~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~----~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~  167 (198)
                          ++..   +|++++|+|+++...... ..++..+..    .+.|+++|+||+|+..........+..++.....  .
T Consensus        82 ----~~~~---~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~--~  152 (184)
T 3ihw_A           82 ----FAAW---VDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDL--K  152 (184)
T ss_dssp             ----HHHH---CSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHT--T
T ss_pred             ----eecC---CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHc--C
Confidence                2222   899999999986322222 335555543    3689999999999952211100011122222211  1


Q ss_pred             CCCcEEeccCCCCChHHHHHHHHHhhcc
Q 029158          168 VQPVMMVSSKSGAGIRSLRTVLSKIARF  195 (198)
Q Consensus       168 ~~~v~~~Sa~~~~gi~~l~~~i~~~~~~  195 (198)
                      ..+++++||++|+|+++++++|.+.+..
T Consensus       153 ~~~~~e~Sa~~~~gv~~lf~~l~~~i~~  180 (184)
T 3ihw_A          153 RCTYYETCATYGLNVERVFQDVAQKVVA  180 (184)
T ss_dssp             TCEEEEEBTTTTBTHHHHHHHHHHHHHH
T ss_pred             CCeEEEecCCCCCCHHHHHHHHHHHHHH
Confidence            3689999999999999999999887654

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=99.90  E-value=9.3e-23  Score=146.40  Aligned_cols=155  Identities=12%  Similarity=0.070  Sum_probs=97.3

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCc-eeEE--EEEEe---CCceEEEeCCCCccccchhHHHHHHHH
Q 029158           19 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGL-TQTI--NFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEE   92 (198)
Q Consensus        19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~-t~~~--~~~~~---~~~~~iiDtpG~~~~~~~~~~~~~~~~   92 (198)
                      ....+|+++|.+|+|||||+++|++... .  ..+..+ +.+.  .....   ...+.+|||||....          ..
T Consensus        27 ~~~~ki~vvG~~~vGKSsli~~l~~~~~-~--~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~----------~~   93 (201)
T 2hup_A           27 DFLFKLVLVGDASVGKTCVVQRFKTGAF-S--ERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERF----------RT   93 (201)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHHSCC-------------CEEEEEEEETTEEEEEEEECCTTCGGG----------HH
T ss_pred             ccceEEEEECcCCCCHHHHHHHHhhCCC-C--CCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhH----------HH
Confidence            3457899999999999999999998731 1  111111 1111  11122   247999999996321          23


Q ss_pred             HHHHHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHh---hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCC
Q 029158           93 LVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLV  168 (198)
Q Consensus        93 ~~~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~---~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  168 (198)
                      +...++..   +|++++|+|+++...... ..++..+..   .+.|+++|+||+|+.......  .+.+++.....   +
T Consensus        94 ~~~~~~~~---~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~--~~~~~~~~~~~---~  165 (201)
T 2hup_A           94 ITQSYYRS---ANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVS--LAEAQSLAEHY---D  165 (201)
T ss_dssp             HHHHHHTT---CSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSC--HHHHHHHHHHT---T
T ss_pred             HHHHHHhh---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccccccC--HHHHHHHHHHc---C
Confidence            33444443   899999999976322111 234555543   368999999999997532111  01122222211   3


Q ss_pred             C-CcEEeccCCCCChHHHHHHHHHhhc
Q 029158          169 Q-PVMMVSSKSGAGIRSLRTVLSKIAR  194 (198)
Q Consensus       169 ~-~v~~~Sa~~~~gi~~l~~~i~~~~~  194 (198)
                      . +++++||++++|+++++++|.+.+.
T Consensus       166 ~~~~~~~SA~~g~gi~~l~~~l~~~i~  192 (201)
T 2hup_A          166 ILCAIETSAKDSSNVEEAFLRVATELI  192 (201)
T ss_dssp             CSEEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred             CCEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            5 8999999999999999999988764

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.90  E-value=1.7e-23  Score=148.99  Aligned_cols=156  Identities=16%  Similarity=0.126  Sum_probs=100.9

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEE---eCCceEEEeCCCCccccchhHHHHHHHHHHHH
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE   96 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~   96 (198)
                      ...+|+++|.+|+|||||+++|++........+..+++.......   ....+.+|||||.          +.+..+...
T Consensus        22 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~----------~~~~~~~~~   91 (191)
T 3dz8_A           22 YMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQ----------ERYRTITTA   91 (191)
T ss_dssp             ECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHH----------HHCHHHHHH
T ss_pred             eeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCCh----------HHHHHHHHH
Confidence            467999999999999999999998632222222222222222222   2457999999994          222334444


Q ss_pred             HHhcccccceEEEEEeCCCCCCcC-cHHHHHHHHh---hCCcEEEEEeccCCCCcHHH-HHHHHHHHHHHHhccCCCCCc
Q 029158           97 YVSTRVSLKRVCLLIDTKWGVKPR-DHELISLMER---SQTKYQVVLTKTDTVFPIDV-ARRAMQIEESLKANNSLVQPV  171 (198)
Q Consensus        97 ~~~~~~~~d~vi~v~d~~~~~~~~-~~~~~~~~~~---~~~p~iiv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~v  171 (198)
                      ++..   +|++++|+|+++..... ...++..+..   .+.|+++|+||+|+...... .+....+.+..      +.++
T Consensus        92 ~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~------~~~~  162 (191)
T 3dz8_A           92 YYRG---AMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQL------GFDF  162 (191)
T ss_dssp             HHTT---CCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHH------TCEE
T ss_pred             HHcc---CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHc------CCeE
Confidence            4444   89999999998632211 2334555544   37899999999999654211 11112222221      4689


Q ss_pred             EEeccCCCCChHHHHHHHHHhhc
Q 029158          172 MMVSSKSGAGIRSLRTVLSKIAR  194 (198)
Q Consensus       172 ~~~Sa~~~~gi~~l~~~i~~~~~  194 (198)
                      +++||++|.|+++++++|.+.+.
T Consensus       163 ~~~Sa~~~~gi~~l~~~l~~~i~  185 (191)
T 3dz8_A          163 FEASAKENISVRQAFERLVDAIC  185 (191)
T ss_dssp             EECBTTTTBSHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHH
Confidence            99999999999999999988664

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=99.90  E-value=8.1e-23  Score=146.46  Aligned_cols=152  Identities=17%  Similarity=0.157  Sum_probs=96.7

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCce-eEEEE--EEe-C----------------------------
Q 029158           19 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT-QTINF--FKL-G----------------------------   66 (198)
Q Consensus        19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t-~~~~~--~~~-~----------------------------   66 (198)
                      ....+|+++|.+|+|||||+++|++....   ..+.+++ .+...  ... +                            
T Consensus         5 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (208)
T 3clv_A            5 KSSYKTVLLGESSVGKSSIVLRLTKDTFH---ENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITN   81 (208)
T ss_dssp             CSSEEEEEECCTTSSHHHHHHHHHHSCCC---SSCCCCCSCEEEEEEEETTC----------------------------
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhCcCC---CCcCccccceeEEEEEEecCcccccccccccccccccccccccccccc
Confidence            35679999999999999999999987411   2222221 11111  111 1                            


Q ss_pred             -----------CceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHh-hCC
Q 029158           67 -----------TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER-SQT  133 (198)
Q Consensus        67 -----------~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~-~~~  133 (198)
                                 ..+.+|||||....          ......++.   .+|++++|+|++++..... ..++..+.. .+.
T Consensus        82 ~~~~~~~~~~~~~~~i~Dt~G~~~~----------~~~~~~~~~---~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~  148 (208)
T 3clv_A           82 QHNNYNENLCNIKFDIWDTAGQERY----------ASIVPLYYR---GATCAIVVFDISNSNTLDRAKTWVNQLKISSNY  148 (208)
T ss_dssp             ---CCCTTTCEEEEEEEECTTGGGC----------TTTHHHHHT---TCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCC
T ss_pred             ccccccCccceeEEEEEECCCcHHH----------HHHHHHHhc---CCCEEEEEEECCCHHHHHHHHHHHHHHHhhCCC
Confidence                       57899999995332          122233333   3899999999987422222 234444443 468


Q ss_pred             cEEEEEeccCCCCc-HHHHHHHHHHHHHHHhccCCCCCcEEeccCCCCChHHHHHHHHHhh
Q 029158          134 KYQVVLTKTDTVFP-IDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA  193 (198)
Q Consensus       134 p~iiv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~~~gi~~l~~~i~~~~  193 (198)
                      |+++|+||+|+... ...++    +++....   .+.+++++||+++.|+++++++|.+.+
T Consensus       149 piilv~NK~D~~~~~~~~~~----~~~~~~~---~~~~~~~~Sa~~~~~i~~l~~~l~~~~  202 (208)
T 3clv_A          149 IIILVANKIDKNKFQVDILE----VQKYAQD---NNLLFIQTSAKTGTNIKNIFYMLAEEI  202 (208)
T ss_dssp             EEEEEEECTTCC-CCSCHHH----HHHHHHH---TTCEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred             cEEEEEECCCcccccCCHHH----HHHHHHH---cCCcEEEEecCCCCCHHHHHHHHHHHH
Confidence            99999999993221 11222    2222222   246899999999999999999998765

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=99.90  E-value=9.5e-23  Score=143.94  Aligned_cols=154  Identities=14%  Similarity=0.132  Sum_probs=97.8

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEE--EEEEe---CCceEEEeCCCCccccchhHHHHHHHHH
Q 029158           19 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI--NFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEEL   93 (198)
Q Consensus        19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~--~~~~~---~~~~~iiDtpG~~~~~~~~~~~~~~~~~   93 (198)
                      ....+|+++|.+|+|||||+++|++..   ....+.+++...  .....   ...+.+|||||....          ...
T Consensus        16 ~~~~ki~v~G~~~~GKSsl~~~l~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~----------~~~   82 (183)
T 3kkq_A           16 LPTYKLVVVGDGGVGKSALTIQFFQKI---FVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEF----------SAM   82 (183)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHSC---CCSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGG----------CSS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCC---CCCCCCCCccceeEEEEEeCCcEEEEEEEECCCchhh----------HHH
Confidence            446789999999999999999999863   223333333221  11112   234778999996331          111


Q ss_pred             HHHHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHH----hhCCcEEEEEeccCCCCcHHHH-HHHHHHHHHHHhccCC
Q 029158           94 VKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLME----RSQTKYQVVLTKTDTVFPIDVA-RRAMQIEESLKANNSL  167 (198)
Q Consensus        94 ~~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~----~~~~p~iiv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~  167 (198)
                      ...++..   +|++++|+|+++...... ..++..+.    ..+.|+++|+||+|+....... +....+.+..      
T Consensus        83 ~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~------  153 (183)
T 3kkq_A           83 REQYMRT---GDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKY------  153 (183)
T ss_dssp             HHHHHHH---CSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHH------
T ss_pred             HHHHHhc---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHh------
Confidence            2233333   899999999986322111 23333332    2468999999999997532211 1112222221      


Q ss_pred             CCCcEEeccC-CCCChHHHHHHHHHhhc
Q 029158          168 VQPVMMVSSK-SGAGIRSLRTVLSKIAR  194 (198)
Q Consensus       168 ~~~v~~~Sa~-~~~gi~~l~~~i~~~~~  194 (198)
                      +.+++++||+ +++|+++++++|.+.+.
T Consensus       154 ~~~~~~~Sa~~~~~~v~~l~~~l~~~i~  181 (183)
T 3kkq_A          154 NIPYIETSAKDPPLNVDKTFHDLVRVIR  181 (183)
T ss_dssp             TCCEEEEBCSSSCBSHHHHHHHHHHHHH
T ss_pred             CCeEEEeccCCCCCCHHHHHHHHHHHHh
Confidence            3789999999 99999999999988764

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.90  E-value=5.6e-23  Score=147.62  Aligned_cols=153  Identities=19%  Similarity=0.141  Sum_probs=97.1

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE--EEEe---CCceEEEeCCCCccccchhHHHHHHHHHH
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELV   94 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~--~~~~---~~~~~iiDtpG~~~~~~~~~~~~~~~~~~   94 (198)
                      ...+|+++|.+|+|||||+++|++... . ....+..+.+..  ....   ...+.+|||||...          +..+.
T Consensus        25 ~~~ki~lvG~~~vGKSsLi~~l~~~~~-~-~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~----------~~~~~   92 (201)
T 2ew1_A           25 FLFKIVLIGNAGVGKTCLVRRFTQGLF-P-PGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQER----------FRSIT   92 (201)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSSC-C-TTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGG----------GHHHH
T ss_pred             cceEEEEECcCCCCHHHHHHHHHhCCC-C-CCCCCccceeEEEEEEEECCEEEEEEEEECCCcHH----------HHHHH
Confidence            347999999999999999999998731 1 111222222221  1112   24789999999622          12222


Q ss_pred             HHHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHh---hCCcEEEEEeccCCCCcHHH-HHHHHHHHHHHHhccCCCC
Q 029158           95 KEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDV-ARRAMQIEESLKANNSLVQ  169 (198)
Q Consensus        95 ~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~---~~~p~iiv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~  169 (198)
                         ......+|++++|+|++....... ..++..+..   .+.|+++|+||+|+...... .+....+.+.      .+.
T Consensus        93 ---~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~------~~~  163 (201)
T 2ew1_A           93 ---QSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEA------QDM  163 (201)
T ss_dssp             ---GGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHH------HTC
T ss_pred             ---HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHH------cCC
Confidence               233345999999999986322111 234444443   36899999999999753221 1111112111      147


Q ss_pred             CcEEeccCCCCChHHHHHHHHHhh
Q 029158          170 PVMMVSSKSGAGIRSLRTVLSKIA  193 (198)
Q Consensus       170 ~v~~~Sa~~~~gi~~l~~~i~~~~  193 (198)
                      +++++||++|+|+++++++|.+.+
T Consensus       164 ~~~~~Sa~~g~gv~~l~~~l~~~i  187 (201)
T 2ew1_A          164 YYLETSAKESDNVEKLFLDLACRL  187 (201)
T ss_dssp             CEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCCHHHHHHHHHHHH
Confidence            899999999999999999998765

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=99.89  E-value=1.5e-23  Score=159.11  Aligned_cols=173  Identities=18%  Similarity=0.190  Sum_probs=110.7

Q ss_pred             CCCCCCeEEEEcCCCCCHHHHHHHHhcCccce----eecCCCC----------------------ceeE-----------
Q 029158           17 PAPDLPEIAFAGRSNVGKSSMLNALTRQWGVV----RTSDKPG----------------------LTQT-----------   59 (198)
Q Consensus        17 ~~~~~~~v~~vG~~~~GKSsli~~l~~~~~~~----~~~~~~~----------------------~t~~-----------   59 (198)
                      +....++|+++|.+|+|||||+|+|++.....    .....+.                      +|.+           
T Consensus        22 ~~~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~  101 (299)
T 2aka_B           22 ADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETD  101 (299)
T ss_dssp             TTCCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHH
T ss_pred             CCCCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHH
Confidence            44567899999999999999999999874211    1122222                      2211           


Q ss_pred             ---------------EEEEE-eCCceEEEeCCCCccccc---hhHHHHHHHHHHHHHHhcccccc-eEEEEEeCCCCCCc
Q 029158           60 ---------------INFFK-LGTKLCLVDLPGYGFAYA---KEEVKDAWEELVKEYVSTRVSLK-RVCLLIDTKWGVKP  119 (198)
Q Consensus        60 ---------------~~~~~-~~~~~~iiDtpG~~~~~~---~~~~~~~~~~~~~~~~~~~~~~d-~vi~v~d~~~~~~~  119 (198)
                                     ..+.. ...++.+|||||+.....   .......+..+...|+..   ++ ++++|+|++.++..
T Consensus       102 ~i~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~il~v~d~~~~~~~  178 (299)
T 2aka_B          102 RVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTK---ENCLILAVSPANSDLAN  178 (299)
T ss_dssp             HHCSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTS---TTEEEEEEEESSSCGGG
T ss_pred             HhcccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcC---CCeEEEEEecCCcchhh
Confidence                           01111 136899999999865321   222333455666666664   44 45589999887666


Q ss_pred             CcH-HHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEeccCCCCChHHHHHHHHHhhc
Q 029158          120 RDH-ELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR  194 (198)
Q Consensus       120 ~~~-~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~~~gi~~l~~~i~~~~~  194 (198)
                      .+. .+++.+...+.|+++|+||+|+......  ....++..+........+++++||++|.|+++++++|.+..+
T Consensus       179 ~~~~~~~~~~~~~~~~~i~V~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~~~  252 (299)
T 2aka_B          179 SDALKIAKEVDPQGQRTIGVITKLDLMDEGTD--ARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAERK  252 (299)
T ss_dssp             CHHHHHHHHHCTTCSSEEEEEECGGGSCTTCC--CHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHHHH
T ss_pred             hHHHHHHHHhCCCCCeEEEEEEccccCCCCch--HHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHHHH
Confidence            664 4677777678999999999999865421  111111111111111357899999999999999999877543

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=99.89  E-value=7.2e-23  Score=144.86  Aligned_cols=156  Identities=12%  Similarity=0.049  Sum_probs=98.9

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE--EEEeC---CceEEEeCCCCccccchhHHHHHHHHH
Q 029158           19 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FFKLG---TKLCLVDLPGYGFAYAKEEVKDAWEEL   93 (198)
Q Consensus        19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~--~~~~~---~~~~iiDtpG~~~~~~~~~~~~~~~~~   93 (198)
                      +...+|+++|.+|+|||||+++|++... . ....+.++.+..  ....+   ..+.+|||||....          ...
T Consensus         8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~----------~~~   75 (186)
T 2bme_A            8 DFLFKFLVIGNAGTGKSCLLHQFIEKKF-K-DDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERF----------RSV   75 (186)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHSSC-C-TTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGG----------HHH
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHcCCC-C-CCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHH----------HHH
Confidence            3457999999999999999999998731 1 122222222221  12222   47899999996321          222


Q ss_pred             HHHHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHh---hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCC
Q 029158           94 VKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQ  169 (198)
Q Consensus        94 ~~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~---~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  169 (198)
                      .   ......+|++++|+|+++...... ..++..+..   .+.|+++|+||+|+........  ....+....   .+.
T Consensus        76 ~---~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~--~~~~~~~~~---~~~  147 (186)
T 2bme_A           76 T---RSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTF--LEASRFAQE---NEL  147 (186)
T ss_dssp             H---HTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCH--HHHHHHHHH---TTC
T ss_pred             H---HHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCH--HHHHHHHHH---cCC
Confidence            2   233345899999999986322222 234443332   3689999999999964322110  111111111   247


Q ss_pred             CcEEeccCCCCChHHHHHHHHHhhc
Q 029158          170 PVMMVSSKSGAGIRSLRTVLSKIAR  194 (198)
Q Consensus       170 ~v~~~Sa~~~~gi~~l~~~i~~~~~  194 (198)
                      +++++||++|+|+++++++|.+.+.
T Consensus       148 ~~~~~Sa~~~~gi~~l~~~l~~~~~  172 (186)
T 2bme_A          148 MFLETSALTGENVEEAFVQCARKIL  172 (186)
T ss_dssp             EEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             EEEEecCCCCCCHHHHHHHHHHHHH
Confidence            8999999999999999999987653

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.89  E-value=1.9e-23  Score=150.67  Aligned_cols=158  Identities=11%  Similarity=-0.000  Sum_probs=97.8

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCcee-E--EEEEEe--CCceEEEeCCCCccccchhHHHHHHHHH
Q 029158           19 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQ-T--INFFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEEL   93 (198)
Q Consensus        19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~-~--~~~~~~--~~~~~iiDtpG~~~~~~~~~~~~~~~~~   93 (198)
                      ....+|+++|.+|+|||||+++|++... .  ..+.+++. .  ..+...  ...+.+|||||.....          ..
T Consensus        23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~-~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~----------~~   89 (207)
T 2fv8_A           23 MIRKKLVVVGDGACGKTCLLIVFSKDEF-P--EVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYD----------RL   89 (207)
T ss_dssp             SEEEEEEEEECTTSSHHHHHHHHHHSSC-C---------CCEEEEEEEETTEEEEEEEEECTTCTTCT----------TT
T ss_pred             ccCcEEEEECcCCCCHHHHHHHHhcCCC-C--CcCCCcccceEEEEEEECCEEEEEEEEECCCcHHHH----------HH
Confidence            3457999999999999999999998742 1  22222221 1  111111  2478999999964321          11


Q ss_pred             HHHHHhcccccceEEEEEeCCCCCC--cCcHHHHHHHHhh--CCcEEEEEeccCCCCcHHHHHHHH----------HHHH
Q 029158           94 VKEYVSTRVSLKRVCLLIDTKWGVK--PRDHELISLMERS--QTKYQVVLTKTDTVFPIDVARRAM----------QIEE  159 (198)
Q Consensus        94 ~~~~~~~~~~~d~vi~v~d~~~~~~--~~~~~~~~~~~~~--~~p~iiv~nK~Dl~~~~~~~~~~~----------~~~~  159 (198)
                      ..   .....+|++++|+|+++...  .....++..+...  +.|+++|+||+|+.......+...          ...+
T Consensus        90 ~~---~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~  166 (207)
T 2fv8_A           90 RP---LSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRA  166 (207)
T ss_dssp             GG---GGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHH
T ss_pred             HH---hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHH
Confidence            11   22344899999999976321  1113345555544  799999999999986543322111          1111


Q ss_pred             HHHhccCCCCCcEEeccCCCCChHHHHHHHHHhhc
Q 029158          160 SLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR  194 (198)
Q Consensus       160 ~~~~~~~~~~~v~~~Sa~~~~gi~~l~~~i~~~~~  194 (198)
                      .....  ...+++++||++|.|+++++++|.+.+-
T Consensus       167 ~~~~~--~~~~~~~~SA~~g~gi~el~~~l~~~i~  199 (207)
T 2fv8_A          167 MAVRI--QAYDYLECSAKTKEGVREVFETATRAAL  199 (207)
T ss_dssp             HHHHT--TCSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             HHHhc--CCCEEEEeeCCCCCCHHHHHHHHHHHHH
Confidence            11111  1237999999999999999999988753

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=99.89  E-value=1.7e-23  Score=151.88  Aligned_cols=159  Identities=14%  Similarity=0.090  Sum_probs=100.6

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE-EEEeC---CceEEEeCCCCccccchhHHHHHHHHHH
Q 029158           19 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN-FFKLG---TKLCLVDLPGYGFAYAKEEVKDAWEELV   94 (198)
Q Consensus        19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~-~~~~~---~~~~iiDtpG~~~~~~~~~~~~~~~~~~   94 (198)
                      ....+|+++|.+|+|||||+++|++...........+.+.... +...+   ..+.+|||||.....          .+.
T Consensus         9 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~----------~~~   78 (218)
T 4djt_A            9 ELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKA----------VLK   78 (218)
T ss_dssp             -CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTS----------CCC
T ss_pred             cCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhc----------hHH
Confidence            4567999999999999999999997743333333333332222 22222   458999999964321          112


Q ss_pred             HHHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHh---hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCC
Q 029158           95 KEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQP  170 (198)
Q Consensus        95 ~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~---~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (198)
                      ..++.   .+|++++|+|++++....+ ..++..+..   .+.|+++|+||+|+........  +...+.   ....+.+
T Consensus        79 ~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~--~~~~~~---~~~~~~~  150 (218)
T 4djt_A           79 DVYYI---GASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISK--KLVMEV---LKGKNYE  150 (218)
T ss_dssp             HHHHT---TCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CCH--HHHHHH---TTTCCCE
T ss_pred             HHHhh---cCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCH--HHHHHH---HHHcCCc
Confidence            22333   2899999999987433222 234444443   2689999999999976432211  111111   1233578


Q ss_pred             cEEeccCCCCChHHHHHHHHHhhcc
Q 029158          171 VMMVSSKSGAGIRSLRTVLSKIARF  195 (198)
Q Consensus       171 v~~~Sa~~~~gi~~l~~~i~~~~~~  195 (198)
                      ++++||++|.|+++++++|.+.+..
T Consensus       151 ~~~~Sa~~g~gv~~l~~~l~~~~~~  175 (218)
T 4djt_A          151 YFEISAKTAHNFGLPFLHLARIFTG  175 (218)
T ss_dssp             EEEEBTTTTBTTTHHHHHHHHHHHC
T ss_pred             EEEEecCCCCCHHHHHHHHHHHHhc
Confidence            9999999999999999999987643

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=99.89  E-value=6.9e-23  Score=142.75  Aligned_cols=158  Identities=14%  Similarity=0.041  Sum_probs=93.9

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE---EEE--eCCceEEEeCCCCccccchhHHHHHHHHHHH
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFK--LGTKLCLVDLPGYGFAYAKEEVKDAWEELVK   95 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~---~~~--~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~   95 (198)
                      ..+|+++|.+|+|||||+++|++.. .... ..+.++.+..   +..  ....+.+|||||.....         ..+..
T Consensus         2 ~~ki~ivG~~~~GKSsli~~l~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~---------~~~~~   70 (169)
T 3q85_A            2 VFKVMLVGESGVGKSTLAGTFGGLQ-GDHA-HEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAG---------GWLQD   70 (169)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCC--------------CEEEEEEEETTEEEEEEEECCCCC-----------------C
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhcc-Cccc-ccCCCcCCeeeEEEEECCeEEEEEEEECCCccccc---------hhhhh
Confidence            4689999999999999999998763 1111 1111222211   111  23578899999974311         11222


Q ss_pred             HHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHhh----CCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCC
Q 029158           96 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS----QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQP  170 (198)
Q Consensus        96 ~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~~----~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (198)
                      .++..   +|++++|+|+++...... ..++..+...    +.|+++|+||+|+........  +..++....   .+.+
T Consensus        71 ~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~--~~~~~~~~~---~~~~  142 (169)
T 3q85_A           71 HCLQT---GDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSL--EEGRHLAGT---LSCK  142 (169)
T ss_dssp             HHHHH---CSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCH--HHHHHHHHH---TTCE
T ss_pred             hhhcc---CCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCH--HHHHHHHHH---cCCc
Confidence            23333   899999999986321111 2334444332    689999999999974322111  111111111   1468


Q ss_pred             cEEeccCCCCChHHHHHHHHHhhcccc
Q 029158          171 VMMVSSKSGAGIRSLRTVLSKIARFAK  197 (198)
Q Consensus       171 v~~~Sa~~~~gi~~l~~~i~~~~~~~r  197 (198)
                      ++++||++++|++++++++.+.+...|
T Consensus       143 ~~~~Sa~~~~~v~~l~~~l~~~i~~~r  169 (169)
T 3q85_A          143 HIETSAALHHNTRELFEGAVRQIRLRR  169 (169)
T ss_dssp             EEECBTTTTBSHHHHHHHHHHHHHHTC
T ss_pred             EEEecCccCCCHHHHHHHHHHHHHhcC
Confidence            999999999999999999999876544

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=99.89  E-value=1.3e-23  Score=148.10  Aligned_cols=158  Identities=17%  Similarity=0.045  Sum_probs=93.3

Q ss_pred             CCCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeE-----EEEEEeCCceEEEeCCCCccccchhHHHHHHHH
Q 029158           18 APDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT-----INFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEE   92 (198)
Q Consensus        18 ~~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~-----~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~   92 (198)
                      +....+|+++|.+|+|||||++++++..   ....+.+++.+     .........+.+|||||...-          ..
T Consensus         5 ~~~~~ki~v~G~~~~GKssl~~~~~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----------~~   71 (182)
T 3bwd_D            5 ASRFIKCVTVGDGAVGKTCLLISYTSNT---FPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDY----------NR   71 (182)
T ss_dssp             --CCCEEEEECSTTSSHHHHHHHHHHSC---CC----------CBCCCC-------CEEECCCC-CTT----------TT
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHhcCC---CCCCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhh----------hh
Confidence            3456899999999999999999999873   12233333321     112223456789999996331          11


Q ss_pred             HHHHHHhcccccceEEEEEeCCCCCCcCcH--HHHHHHHhh--CCcEEEEEeccCCCCcHHHHH--------HHHHHHHH
Q 029158           93 LVKEYVSTRVSLKRVCLLIDTKWGVKPRDH--ELISLMERS--QTKYQVVLTKTDTVFPIDVAR--------RAMQIEES  160 (198)
Q Consensus        93 ~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~--~~~~~~~~~--~~p~iiv~nK~Dl~~~~~~~~--------~~~~~~~~  160 (198)
                      ....+   ...+|++++|+|+++.......  .++..+...  +.|+++|+||+|+........        ..+..++.
T Consensus        72 ~~~~~---~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~  148 (182)
T 3bwd_D           72 LRPLS---YRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEEL  148 (182)
T ss_dssp             TGGGG---GTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHH
T ss_pred             hHHhh---ccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHH
Confidence            11122   2348999999999763222221  345555543  799999999999976543200        01111221


Q ss_pred             HHhccCCCCCcEEeccCCCCChHHHHHHHHHhh
Q 029158          161 LKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA  193 (198)
Q Consensus       161 ~~~~~~~~~~v~~~Sa~~~~gi~~l~~~i~~~~  193 (198)
                      .... + ..+++++||++|+|+++++++|.+.+
T Consensus       149 ~~~~-~-~~~~~~~Sa~~~~gi~~l~~~l~~~i  179 (182)
T 3bwd_D          149 KKLI-G-APAYIECSSKSQENVKGVFDAAIRVV  179 (182)
T ss_dssp             HHHH-T-CSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             HHHc-C-CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            1111 1 24899999999999999999998765

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=99.89  E-value=4e-23  Score=146.04  Aligned_cols=157  Identities=14%  Similarity=-0.007  Sum_probs=99.7

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEE---EEEE--eCCceEEEeCCCCccccchhHHHHHHHHHHH
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---NFFK--LGTKLCLVDLPGYGFAYAKEEVKDAWEELVK   95 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~---~~~~--~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~   95 (198)
                      ..+|+++|.+|+|||||+++|++...   ...+.+++.+.   ....  ....+.+|||||....          .....
T Consensus         5 ~~~i~~~G~~~~GKssl~~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----------~~~~~   71 (186)
T 1mh1_A            5 AIKCVVVGDGAVGKTCLLISYTTNAF---PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDY----------DRLRP   71 (186)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSSC---CSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGG----------TTTGG
T ss_pred             EEEEEEECCCCCCHHHHHHHHHcCCC---CCCcCCcccceeEEEEEECCEEEEEEEEECCCCHhH----------HHHHH
Confidence            46899999999999999999997632   22333333221   1111  2346789999997321          11111


Q ss_pred             HHHhcccccceEEEEEeCCCCCCcCcH--HHHHHHHhh--CCcEEEEEeccCCCCcHHHHHHH----------HHHHHHH
Q 029158           96 EYVSTRVSLKRVCLLIDTKWGVKPRDH--ELISLMERS--QTKYQVVLTKTDTVFPIDVARRA----------MQIEESL  161 (198)
Q Consensus        96 ~~~~~~~~~d~vi~v~d~~~~~~~~~~--~~~~~~~~~--~~p~iiv~nK~Dl~~~~~~~~~~----------~~~~~~~  161 (198)
                      .   ....+|++++|+|+++.......  .++..+...  +.|+++|+||+|+.......+..          +...+..
T Consensus        72 ~---~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~  148 (186)
T 1mh1_A           72 L---SYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMA  148 (186)
T ss_dssp             G---GCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHH
T ss_pred             H---hccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHH
Confidence            2   23458999999999863222222  345555544  79999999999997654322111          1111111


Q ss_pred             HhccCCCCCcEEeccCCCCChHHHHHHHHHhhcc
Q 029158          162 KANNSLVQPVMMVSSKSGAGIRSLRTVLSKIARF  195 (198)
Q Consensus       162 ~~~~~~~~~v~~~Sa~~~~gi~~l~~~i~~~~~~  195 (198)
                      ...  ...+++++||++|+|+++++++|.+.+..
T Consensus       149 ~~~--~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~  180 (186)
T 1mh1_A          149 KEI--GAVKYLECSALTQRGLKTVFDEAIRAVLC  180 (186)
T ss_dssp             HHT--TCSEEEECCTTTCTTHHHHHHHHHHHHSC
T ss_pred             Hhc--CCcEEEEecCCCccCHHHHHHHHHHHHhc
Confidence            111  12489999999999999999999887643

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=99.89  E-value=3.1e-23  Score=166.06  Aligned_cols=153  Identities=22%  Similarity=0.352  Sum_probs=109.2

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE---EEEeCCceEEEeCCCCc-cccchh---HHHHHHHHHH
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYG-FAYAKE---EVKDAWEELV   94 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~---~~~~~~~~~iiDtpG~~-~~~~~~---~~~~~~~~~~   94 (198)
                      .+|+++|.+|+|||||+|+|++. ....+.++++||.+..   +...+..+.+|||||+. +....-   .....+    
T Consensus       244 ~kV~ivG~pnvGKSSLln~L~~~-~~a~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~----  318 (482)
T 1xzp_A          244 LRMVIVGKPNVGKSTLLNRLLNE-DRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTL----  318 (482)
T ss_dssp             EEEEEECCHHHHTCHHHHHHHHH-TBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHH----
T ss_pred             CEEEEECcCCCcHHHHHHHHHCC-CCCccCCCCCeeeeeEEEEEecCCeEEEEEECCCccccchhhHHHHHHHHHH----
Confidence            68999999999999999999987 4456788888887643   33346789999999986 431100   011111    


Q ss_pred             HHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEe
Q 029158           95 KEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMV  174 (198)
Q Consensus        95 ~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  174 (198)
                       .++   ..+|++++|+|++++....+.++++.+  .+.|+++|+||+|+......+    .+.+..    ....+++++
T Consensus       319 -~~~---~~aD~vl~VvD~s~~~s~~~~~il~~l--~~~piivV~NK~DL~~~~~~~----~~~~~~----~~~~~~i~i  384 (482)
T 1xzp_A          319 -QEI---EKADIVLFVLDASSPLDEEDRKILERI--KNKRYLVVINKVDVVEKINEE----EIKNKL----GTDRHMVKI  384 (482)
T ss_dssp             -HHH---HHCSEEEEEEETTSCCCHHHHHHHHHH--TTSSEEEEEEECSSCCCCCHH----HHHHHH----TCSTTEEEE
T ss_pred             -HHh---hcccEEEEEecCCCCCCHHHHHHHHHh--cCCCEEEEEECcccccccCHH----HHHHHh----cCCCcEEEE
Confidence             122   238999999999886655555555554  378999999999997642222    222221    123689999


Q ss_pred             ccCCCCChHHHHHHHHHhh
Q 029158          175 SSKSGAGIRSLRTVLSKIA  193 (198)
Q Consensus       175 Sa~~~~gi~~l~~~i~~~~  193 (198)
                      ||++|+|+++++++|.+.+
T Consensus       385 SAktg~Gi~eL~~~l~~~~  403 (482)
T 1xzp_A          385 SALKGEGLEKLEESIYRET  403 (482)
T ss_dssp             EGGGTCCHHHHHHHHHHHT
T ss_pred             ECCCCCCHHHHHHHHHHHH
Confidence            9999999999999998864

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=99.89  E-value=7.5e-23  Score=143.73  Aligned_cols=157  Identities=13%  Similarity=0.107  Sum_probs=98.1

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeE-EEEEEe---CCceEEEeCCCCccccchhHHHHHHHHHHH
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT-INFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVK   95 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~-~~~~~~---~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~   95 (198)
                      ...+|+++|.+|+|||||+++|++........+..+.... ..+...   ...+.+|||||....          .....
T Consensus         5 ~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~----------~~~~~   74 (178)
T 2hxs_A            5 RQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIG----------GKMLD   74 (178)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTT----------CTTHH
T ss_pred             ceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccc----------cchhh
Confidence            4578999999999999999999987421111111111111 112111   257999999996432          11223


Q ss_pred             HHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHhh-----CCc-EEEEEeccCCCCcHHH-HHHHHHHHHHHHhccCC
Q 029158           96 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS-----QTK-YQVVLTKTDTVFPIDV-ARRAMQIEESLKANNSL  167 (198)
Q Consensus        96 ~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~~-----~~p-~iiv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~  167 (198)
                      .++.   .+|++++|+|+++...... ..++..+...     +.| +++|+||+|+...... .+....+.+..      
T Consensus        75 ~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~------  145 (178)
T 2hxs_A           75 KYIY---GAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQEN------  145 (178)
T ss_dssp             HHHT---TCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHH------
T ss_pred             HHHh---hCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHc------
Confidence            3333   3899999999986322222 2344444431     556 7999999999753211 11111222111      


Q ss_pred             CCCcEEeccCCCCChHHHHHHHHHhhcc
Q 029158          168 VQPVMMVSSKSGAGIRSLRTVLSKIARF  195 (198)
Q Consensus       168 ~~~v~~~Sa~~~~gi~~l~~~i~~~~~~  195 (198)
                      +.+++++||++|+|+++++++|.+.+..
T Consensus       146 ~~~~~~~Sa~~~~gi~~l~~~l~~~~~~  173 (178)
T 2hxs_A          146 GFSSHFVSAKTGDSVFLCFQKVAAEILG  173 (178)
T ss_dssp             TCEEEEECTTTCTTHHHHHHHHHHHHTT
T ss_pred             CCcEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence            3689999999999999999999887654

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=99.89  E-value=6.8e-23  Score=144.06  Aligned_cols=154  Identities=7%  Similarity=-0.022  Sum_probs=94.2

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEE--eCCceEEEeCCCCccccchhHHHHHHHHHHHHH
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK--LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY   97 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~--~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~   97 (198)
                      ...+|+++|.+|+|||||+++|++.. .....+..+......+..  ....+.+|||||...               ..+
T Consensus         6 ~~~ki~~vG~~~vGKTsli~~l~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~---------------~~~   69 (178)
T 2iwr_A            6 PELRLGVLGDARSGKSSLIHRFLTGS-YQVLEKTESEQYKKEMLVDGQTHLVLIREEAGAPD---------------AKF   69 (178)
T ss_dssp             CEEEEEEECCGGGCHHHHHHHHHHSC-CCCCSSCSSSEEEEEEEETTEEEEEEEEECSSSCC---------------HHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCC-CCCcCCCcceeEEEEEEECCEEEEEEEEECCCCch---------------hHH
Confidence            45789999999999999999999873 222222221111111111  135689999999632               123


Q ss_pred             HhcccccceEEEEEeCCCCCCcCc-HHHHHHHHh------hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCC
Q 029158           98 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER------SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQP  170 (198)
Q Consensus        98 ~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~------~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (198)
                      +..   +|++++|+|+++...... ..++.++..      .+.|+++|+||+|+..........+..++.....  ...+
T Consensus        70 ~~~---~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~--~~~~  144 (178)
T 2iwr_A           70 SGW---ADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADM--KRCS  144 (178)
T ss_dssp             HHH---CSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHH--SSEE
T ss_pred             HHh---CCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhh--cCCe
Confidence            332   899999999986322222 122223332      2689999999999942110000001111111111  1468


Q ss_pred             cEEeccCCCCChHHHHHHHHHhhc
Q 029158          171 VMMVSSKSGAGIRSLRTVLSKIAR  194 (198)
Q Consensus       171 v~~~Sa~~~~gi~~l~~~i~~~~~  194 (198)
                      ++++||++|+|+++++++|.+.+.
T Consensus       145 ~~~~Sa~~~~~i~~lf~~l~~~~~  168 (178)
T 2iwr_A          145 YYETXATYGLNVDRVFQEVAQKVV  168 (178)
T ss_dssp             EEEEBTTTTBTHHHHHHHHHHHHH
T ss_pred             EEEEeccccCCHHHHHHHHHHHHH
Confidence            999999999999999999987653

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=99.89  E-value=3.3e-24  Score=151.23  Aligned_cols=157  Identities=14%  Similarity=0.011  Sum_probs=97.6

Q ss_pred             CCCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEE---EEEEe--CCceEEEeCCCCccccchhHHHHHHHH
Q 029158           18 APDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---NFFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEE   92 (198)
Q Consensus        18 ~~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~---~~~~~--~~~~~iiDtpG~~~~~~~~~~~~~~~~   92 (198)
                      ....++|+++|.+|+|||||+++|++...   ...+.+++...   .+...  ...+.+|||||.....          .
T Consensus         3 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~----------~   69 (181)
T 3t5g_A            3 QSKSRKIAILGYRSVGKSSLTIQFVEGQF---VDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYS----------I   69 (181)
T ss_dssp             CEEEEEEEEEESTTSSHHHHHHHHHHSSC---CSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTC----------C
T ss_pred             CCceEEEEEECcCCCCHHHHHHHHHcCCC---CCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhh----------H
Confidence            34568999999999999999999997632   33333333321   12111  2567999999964321          0


Q ss_pred             HHHHHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHH----hhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCC
Q 029158           93 LVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLME----RSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSL  167 (198)
Q Consensus        93 ~~~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~----~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~  167 (198)
                      +...+   ...+|++++|+|+++...... ..++..+.    ..+.|+++|+||+|+........  +..++.....   
T Consensus        70 ~~~~~---~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~--~~~~~~~~~~---  141 (181)
T 3t5g_A           70 FPQTY---SIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISY--EEGKALAESW---  141 (181)
T ss_dssp             CCGGG---TTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCH--HHHHHHHHHT---
T ss_pred             HHHHH---HhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecH--HHHHHHHHHh---
Confidence            11112   234899999999986211111 12333332    23689999999999965432111  1122222211   


Q ss_pred             CCCcEEeccCCCCChHHHHHHHHHhhcc
Q 029158          168 VQPVMMVSSKSGAGIRSLRTVLSKIARF  195 (198)
Q Consensus       168 ~~~v~~~Sa~~~~gi~~l~~~i~~~~~~  195 (198)
                      +.+++++||+++.|+++++++|.+.+..
T Consensus       142 ~~~~~~~Sa~~~~~v~~l~~~l~~~~~~  169 (181)
T 3t5g_A          142 NAAFLESSAKENQTAVDVFRRIILEAEK  169 (181)
T ss_dssp             TCEEEECCTTSHHHHHHHHHHHHHHHHT
T ss_pred             CCcEEEEecCCCCCHHHHHHHHHHHHHH
Confidence            4689999999999999999999887654

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=99.89  E-value=7.5e-23  Score=145.76  Aligned_cols=156  Identities=13%  Similarity=0.062  Sum_probs=98.4

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEE---eCCceEEEeCCCCccccchhHHHHHHHHHHHH
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE   96 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~   96 (198)
                      ...+|+++|.+|+|||||+++|++...........+.+.......   ....+.+|||||....          ......
T Consensus        24 ~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----------~~~~~~   93 (193)
T 2oil_A           24 FVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERY----------RAITSA   93 (193)
T ss_dssp             EEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTT----------CTTHHH
T ss_pred             cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhh----------hhhhHH
Confidence            357999999999999999999998742111111112221111111   2457899999997432          122233


Q ss_pred             HHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHh---hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcE
Q 029158           97 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVM  172 (198)
Q Consensus        97 ~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~---~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~  172 (198)
                      ++.   .+|++++|+|++....... ..++..+..   .+.|+++|+||+|+.......  .+..++....   .+.+++
T Consensus        94 ~~~---~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~--~~~~~~~~~~---~~~~~~  165 (193)
T 2oil_A           94 YYR---GAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVP--TEEARMFAEN---NGLLFL  165 (193)
T ss_dssp             HHT---TCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSC--HHHHHHHHHH---TTCEEE
T ss_pred             Hhc---cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccC--HHHHHHHHHH---cCCEEE
Confidence            333   3899999999986322111 234444443   268999999999997542211  0111111111   246899


Q ss_pred             EeccCCCCChHHHHHHHHHhh
Q 029158          173 MVSSKSGAGIRSLRTVLSKIA  193 (198)
Q Consensus       173 ~~Sa~~~~gi~~l~~~i~~~~  193 (198)
                      ++||++|+|+++++++|.+.+
T Consensus       166 ~~Sa~~~~gi~~l~~~l~~~i  186 (193)
T 2oil_A          166 ETSALDSTNVELAFETVLKEI  186 (193)
T ss_dssp             EECTTTCTTHHHHHHHHHHHH
T ss_pred             EEeCCCCCCHHHHHHHHHHHH
Confidence            999999999999999998765

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=99.89  E-value=4.8e-23  Score=153.56  Aligned_cols=174  Identities=13%  Similarity=0.097  Sum_probs=108.3

Q ss_pred             CCCCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCC-ceeEEE---EEEeCCceEEEeCCCCccccchhHHHHHHHH
Q 029158           17 PAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPG-LTQTIN---FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEE   92 (198)
Q Consensus        17 ~~~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~-~t~~~~---~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~   92 (198)
                      +.....+|+++|.+|+|||||+++|++.. .......+. +|....   ....+.++.+|||||+.+.....  ......
T Consensus        18 ~~~~~~~I~lvG~~g~GKStl~n~l~~~~-~~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~--~~~~~~   94 (260)
T 2xtp_A           18 ASRSELRIILVGKTGTGKSAAGNSILRKQ-AFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHC--EALYKE   94 (260)
T ss_dssp             ---CCEEEEEEECTTSCHHHHHHHHHTSC-CSCCCTTSCCCCCSCEEEEEEETTEEEEEEECCGGGGSSCCC--HHHHHH
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHhCCC-CcccCCCCCceeeeeEEEEEEeCCCEEEEEECcCCCCCCCCH--HHHHHH
Confidence            34467899999999999999999999873 222222222 444322   22346789999999986542211  111222


Q ss_pred             HHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhh-----CCcEEEEEe-ccCCCCcHHHHHHH-----HHHHHHH
Q 029158           93 LVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERS-----QTKYQVVLT-KTDTVFPIDVARRA-----MQIEESL  161 (198)
Q Consensus        93 ~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~-----~~p~iiv~n-K~Dl~~~~~~~~~~-----~~~~~~~  161 (198)
                      +.+.+......+|++++|+|+.. +...+..++..+...     ..|.++|+| |+|+.... .....     ..+++..
T Consensus        95 i~~~~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~~-~~~~i~~~~~~~~~~~~  172 (260)
T 2xtp_A           95 VQRCYLLSAPGPHVLLLVTQLGR-YTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGGS-LMDYMHDSDNKALSKLV  172 (260)
T ss_dssp             HHHHHHHHTTCCSEEEEEEETTC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCC-HHHHHHHCCCHHHHHHH
T ss_pred             HHHHHHhcCCCCcEEEEEEeCCC-CCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCCcc-HHHHHHhcchHHHHHHH
Confidence            23333334456999999999985 555555566666654     578888888 99998542 22211     1122222


Q ss_pred             HhccCCC--CCcEEeccCCCCChHHHHHHHHHhhcc
Q 029158          162 KANNSLV--QPVMMVSSKSGAGIRSLRTVLSKIARF  195 (198)
Q Consensus       162 ~~~~~~~--~~v~~~Sa~~~~gi~~l~~~i~~~~~~  195 (198)
                      .......  ...+++||+++.|+++++++|.+.+..
T Consensus       173 ~~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~  208 (260)
T 2xtp_A          173 AACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLME  208 (260)
T ss_dssp             HHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhCCeEEEecCcccccccHHHHHHHHHHHHHHHHh
Confidence            2222111  112899999999999999999887653

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.89  E-value=2.3e-22  Score=143.65  Aligned_cols=155  Identities=14%  Similarity=0.072  Sum_probs=98.5

Q ss_pred             CCCCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeE-E--EEEE--eCCceEEEeCCCCccccchhHHHHHHH
Q 029158           17 PAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT-I--NFFK--LGTKLCLVDLPGYGFAYAKEEVKDAWE   91 (198)
Q Consensus        17 ~~~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~-~--~~~~--~~~~~~iiDtpG~~~~~~~~~~~~~~~   91 (198)
                      ++....+|+++|.+|+|||||+++|++...   ...+.++... .  .+..  ....+.+|||||...       .    
T Consensus        24 ~~~~~~ki~v~G~~~vGKSsli~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-------~----   89 (196)
T 2atv_A           24 AKSAEVKLAIFGRAGVGKSALVVRFLTKRF---IWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED-------T----   89 (196)
T ss_dssp             ---CCEEEEEECCTTSSHHHHHHHHHHSCC---CSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC-------C----
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHHhCCC---CcccCCCCCceEEEEEEECCEEEEEEEEECCCCCc-------c----
Confidence            345578999999999999999999998732   2222222221 1  1111  135689999999754       1    


Q ss_pred             HHHHHHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHh----hCCcEEEEEeccCCCCcHH--HHHHHHHHHHHHHhc
Q 029158           92 ELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPID--VARRAMQIEESLKAN  164 (198)
Q Consensus        92 ~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~----~~~p~iiv~nK~Dl~~~~~--~~~~~~~~~~~~~~~  164 (198)
                      .....++..   +|++++|+|+++...... ..++..+..    .+.|+++|+||+|+.....  .++.. .+.+..   
T Consensus        90 ~~~~~~~~~---~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~-~~~~~~---  162 (196)
T 2atv_A           90 IQREGHMRW---GEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGE-KLATEL---  162 (196)
T ss_dssp             HHHHHHHHH---CSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHH-HHHHHH---
T ss_pred             cchhhhhcc---CCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHH-HHHHHh---
Confidence            112233333   899999999986322111 233333332    3789999999999976321  11111 122111   


Q ss_pred             cCCCCCcEEeccCCCC-ChHHHHHHHHHhhcc
Q 029158          165 NSLVQPVMMVSSKSGA-GIRSLRTVLSKIARF  195 (198)
Q Consensus       165 ~~~~~~v~~~Sa~~~~-gi~~l~~~i~~~~~~  195 (198)
                         +.+++++||++|. |+++++++|.+.+..
T Consensus       163 ---~~~~~~~Sa~~g~~gi~~l~~~l~~~i~~  191 (196)
T 2atv_A          163 ---ACAFYECSACTGEGNITEIFYELCREVRR  191 (196)
T ss_dssp             ---TSEEEECCTTTCTTCHHHHHHHHHHHHHH
T ss_pred             ---CCeEEEECCCcCCcCHHHHHHHHHHHHHh
Confidence               4789999999999 999999999887643

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=99.89  E-value=4.1e-23  Score=148.24  Aligned_cols=157  Identities=11%  Similarity=0.045  Sum_probs=99.1

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCce-eE--EEEEE--eCCceEEEeCCCCccccchhHHHHHHHHH
Q 029158           19 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT-QT--INFFK--LGTKLCLVDLPGYGFAYAKEEVKDAWEEL   93 (198)
Q Consensus        19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t-~~--~~~~~--~~~~~~iiDtpG~~~~~~~~~~~~~~~~~   93 (198)
                      ....+|+++|.+|+|||||++++++...   ...+.+++ ..  ..+..  ....+.+|||||....          ..+
T Consensus        23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~----------~~~   89 (201)
T 2gco_A           23 AIRKKLVIVGDGACGKTCLLIVFSKDQF---PEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDY----------DRL   89 (201)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHSSC---CSSCCCSSCCCCEEEEEETTEEEEEEEECCCCSGGG----------TTT
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHhCcC---CcccCCcccceEEEEEEECCEEEEEEEEECCCchhH----------HHH
Confidence            3456899999999999999999998732   12222222 11  11211  1347899999996321          111


Q ss_pred             HHHHHhcccccceEEEEEeCCCCCCcCc--HHHHHHHHhh--CCcEEEEEeccCCCCcHHHHHHH----------HHHHH
Q 029158           94 VKEYVSTRVSLKRVCLLIDTKWGVKPRD--HELISLMERS--QTKYQVVLTKTDTVFPIDVARRA----------MQIEE  159 (198)
Q Consensus        94 ~~~~~~~~~~~d~vi~v~d~~~~~~~~~--~~~~~~~~~~--~~p~iiv~nK~Dl~~~~~~~~~~----------~~~~~  159 (198)
                      ..   .....+|++++|+|+++......  ..++..+...  +.|+++|+||+|+.......+..          +...+
T Consensus        90 ~~---~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~  166 (201)
T 2gco_A           90 RP---LSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRD  166 (201)
T ss_dssp             GG---GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHH
T ss_pred             HH---HhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHH
Confidence            11   12345899999999986321111  2345555544  79999999999998764332211          11122


Q ss_pred             HHHhccCCCCCcEEeccCCCCChHHHHHHHHHhh
Q 029158          160 SLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA  193 (198)
Q Consensus       160 ~~~~~~~~~~~v~~~Sa~~~~gi~~l~~~i~~~~  193 (198)
                      .....  ...+++++||++|+|+++++++|.+.+
T Consensus       167 ~~~~~--~~~~~~~~SA~~g~gi~~l~~~i~~~~  198 (201)
T 2gco_A          167 MANRI--SAFGYLECSAKTKEGVREVFEMATRAG  198 (201)
T ss_dssp             HHHHT--TCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             HHHhC--CCcEEEEeeCCCCCCHHHHHHHHHHHH
Confidence            22111  123799999999999999999998865

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=99.89  E-value=3.8e-23  Score=148.73  Aligned_cols=156  Identities=13%  Similarity=0.057  Sum_probs=97.3

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE--EEEe---CCceEEEeCCCCccccchhHHHHHHHHH
Q 029158           19 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEEL   93 (198)
Q Consensus        19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~--~~~~---~~~~~iiDtpG~~~~~~~~~~~~~~~~~   93 (198)
                      ....+|+++|.+|+|||||+++|++....  ....+..+.+..  ....   ...+.+|||||....          ...
T Consensus         6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~----------~~~   73 (207)
T 1vg8_A            6 KVLLKVIILGDSGVGKTSLMNQYVNKKFS--NQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERF----------QSL   73 (207)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHHSCCC--SSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGG----------SCS
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHcCCCC--CCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHH----------HHh
Confidence            35678999999999999999999987421  111222222222  1111   247899999996321          111


Q ss_pred             HHHHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHh-------hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhcc
Q 029158           94 VKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER-------SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANN  165 (198)
Q Consensus        94 ~~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~-------~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~  165 (198)
                      ...+   ...+|++++|+|+++...... ..++..+..       .+.|+++|+||+|+.......+   ..++....  
T Consensus        74 ~~~~---~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~---~~~~~~~~--  145 (207)
T 1vg8_A           74 GVAF---YRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATK---RAQAWCYS--  145 (207)
T ss_dssp             CCGG---GTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHH---HHHHHHHH--
T ss_pred             HHHH---HhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccccCHH---HHHHHHHh--
Confidence            1122   234899999999986322222 233333322       3689999999999974321111   11111111  


Q ss_pred             CCCCCcEEeccCCCCChHHHHHHHHHhhc
Q 029158          166 SLVQPVMMVSSKSGAGIRSLRTVLSKIAR  194 (198)
Q Consensus       166 ~~~~~v~~~Sa~~~~gi~~l~~~i~~~~~  194 (198)
                      ....+++++||++|.|+++++++|.+.+.
T Consensus       146 ~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~  174 (207)
T 1vg8_A          146 KNNIPYFETSAKEAINVEQAFQTIARNAL  174 (207)
T ss_dssp             TTSCCEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred             cCCceEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            22578999999999999999999987653

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=99.89  E-value=2e-23  Score=166.47  Aligned_cols=156  Identities=26%  Similarity=0.343  Sum_probs=106.5

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEE---EEEEeCCceEEEeCCCCccccchhHHHHHHHHH-HHHH
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---NFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEEL-VKEY   97 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~---~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~-~~~~   97 (198)
                      .+|+++|++|+|||||+|+|++. ......+.+++|.+.   .+...+.++.+|||||+.+..      +.++.. ....
T Consensus       225 ~kV~ivG~~nvGKSSLln~L~~~-~~a~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~~~------~~ve~~gi~~~  297 (462)
T 3geh_A          225 LKVAIVGRPNVGKSSLLNAWSQS-DRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETS------DQVEKIGVERS  297 (462)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHH-HBSCCSCCTTCCHHHHHHEEEETTEEEEECC-------------------------
T ss_pred             CEEEEEcCCCCCHHHHHHHHhCC-CcccccCCCCeeEEEEEEEEEECCEEEEEEECCccccch------hHHHHHHHHHH
Confidence            57999999999999999999987 445567778888764   233346789999999984421      111111 2334


Q ss_pred             HhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEeccC
Q 029158           98 VSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSK  177 (198)
Q Consensus        98 ~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~  177 (198)
                      ......+|++++|+|++++....+.++++.+.  ..|+++|+||+|+.......        ... ......+++++||+
T Consensus       298 ~~~~~~aD~vl~VvD~s~~~~~~~~~i~~~l~--~~piivV~NK~Dl~~~~~~~--------~~~-~~~~~~~~i~iSAk  366 (462)
T 3geh_A          298 RQAANTADLVLLTIDAATGWTTGDQEIYEQVK--HRPLILVMNKIDLVEKQLIT--------SLE-YPENITQIVHTAAA  366 (462)
T ss_dssp             -CCCCSCSEEEEEEETTTCSCHHHHHHHHHHT--TSCEEEEEECTTSSCGGGST--------TCC-CCTTCCCEEEEBTT
T ss_pred             hhhhhcCCEEEEEeccCCCCCHHHHHHHHhcc--CCcEEEEEECCCCCcchhhH--------HHH-HhccCCcEEEEECC
Confidence            45566799999999999877766666666665  47999999999998765332        000 01124689999999


Q ss_pred             CCCChHHHHHHHHHhhcc
Q 029158          178 SGAGIRSLRTVLSKIARF  195 (198)
Q Consensus       178 ~~~gi~~l~~~i~~~~~~  195 (198)
                      +|+|+++++++|.+.+..
T Consensus       367 tg~Gi~eL~~~i~~~~~~  384 (462)
T 3geh_A          367 QKQGIDSLETAILEIVQT  384 (462)
T ss_dssp             TTBSHHHHHHHHHHHHTT
T ss_pred             CCCCHHHHHHHHHHHHhc
Confidence            999999999999987653

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=99.89  E-value=7.5e-23  Score=145.36  Aligned_cols=158  Identities=18%  Similarity=0.169  Sum_probs=96.1

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEe---CCceEEEeCCCCccccchhHHHHHHH-HHH
Q 029158           19 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWE-ELV   94 (198)
Q Consensus        19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~~~iiDtpG~~~~~~~~~~~~~~~-~~~   94 (198)
                      ....+|+++|.+|+|||||+++|++........+..+.+........   ...+.+|||||...          +. .+.
T Consensus        18 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----------~~~~~~   87 (189)
T 1z06_A           18 SRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQER----------FRKSMV   87 (189)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHH----------HHTTTH
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchh----------hhhhhh
Confidence            34579999999999999999999987321111122222222222222   25799999999521          12 333


Q ss_pred             HHHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHh----hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCC
Q 029158           95 KEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQ  169 (198)
Q Consensus        95 ~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~----~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  169 (198)
                      ..++.   .+|++++|+|+++...... ..++..+..    .+.|+++|+||+|+........  +..++....   .+.
T Consensus        88 ~~~~~---~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~--~~~~~~~~~---~~~  159 (189)
T 1z06_A           88 QHYYR---NVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPT--DLAQKFADT---HSM  159 (189)
T ss_dssp             HHHHT---TCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCH--HHHHHHHHH---TTC
T ss_pred             HHHhc---CCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCH--HHHHHHHHH---cCC
Confidence            44444   3899999999986322112 234444432    3689999999999965422110  111111111   246


Q ss_pred             CcEEeccCCC---CChHHHHHHHHHhhc
Q 029158          170 PVMMVSSKSG---AGIRSLRTVLSKIAR  194 (198)
Q Consensus       170 ~v~~~Sa~~~---~gi~~l~~~i~~~~~  194 (198)
                      +++++||+++   +|+++++++|.+.+.
T Consensus       160 ~~~~~Sa~~~~~~~~i~~l~~~l~~~i~  187 (189)
T 1z06_A          160 PLFETSAKNPNDNDHVEAIFMTLAHKLK  187 (189)
T ss_dssp             CEEECCSSSGGGGSCHHHHHHHHC----
T ss_pred             EEEEEeCCcCCcccCHHHHHHHHHHHHh
Confidence            8999999999   999999999977653

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=99.89  E-value=1e-22  Score=145.53  Aligned_cols=159  Identities=14%  Similarity=0.070  Sum_probs=98.9

Q ss_pred             CCCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeE---EEEEE--eCCceEEEeCCCCccccchhHHHHHHHH
Q 029158           18 APDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT---INFFK--LGTKLCLVDLPGYGFAYAKEEVKDAWEE   92 (198)
Q Consensus        18 ~~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~---~~~~~--~~~~~~iiDtpG~~~~~~~~~~~~~~~~   92 (198)
                      .....+|+++|.+|+|||||+++|++...  .....+.++.+   ..+..  ....+.+|||||.....         ..
T Consensus        20 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~---------~~   88 (195)
T 3cbq_A           20 KDGIFKVMLVGESGVGKSTLAGTFGGLQG--DSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAG---------GW   88 (195)
T ss_dssp             --CEEEEEEECSTTSSHHHHHHHTCCEEC--CGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGG---------HH
T ss_pred             CCcEEEEEEECCCCCCHHHHHHHHHhccC--CccCCCCcccceEEEEEEECCEEEEEEEEecCCCccch---------hh
Confidence            35568999999999999999999986521  11222333322   11211  23467899999974311         11


Q ss_pred             HHHHHHhcccccceEEEEEeCCCCCCc-CcHHHHHHHHh----hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCC
Q 029158           93 LVKEYVSTRVSLKRVCLLIDTKWGVKP-RDHELISLMER----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSL  167 (198)
Q Consensus        93 ~~~~~~~~~~~~d~vi~v~d~~~~~~~-~~~~~~~~~~~----~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~  167 (198)
                      +...++..   +|++++|+|+++.... .-..++..+..    .+.|+++|+||+|+.......  .+..++.....   
T Consensus        89 ~~~~~~~~---~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~--~~~~~~~a~~~---  160 (195)
T 3cbq_A           89 LRDHCLQT---GDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVS--LEEGRHLAGTL---  160 (195)
T ss_dssp             HHHHHHHH---CSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSC--HHHHHHHHHHT---
T ss_pred             hHHHhhcc---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcC--HHHHHHHHHHh---
Confidence            22333433   8999999999762211 12234444443    268999999999997542211  01111111111   


Q ss_pred             CCCcEEeccCCCCChHHHHHHHHHhhcc
Q 029158          168 VQPVMMVSSKSGAGIRSLRTVLSKIARF  195 (198)
Q Consensus       168 ~~~v~~~Sa~~~~gi~~l~~~i~~~~~~  195 (198)
                      +.+++++||++++|+++++++|.+.+..
T Consensus       161 ~~~~~e~Sa~~~~~v~~lf~~l~~~i~~  188 (195)
T 3cbq_A          161 SCKHIETSAALHHNTRELFEGAVRQIRL  188 (195)
T ss_dssp             TCEEEEEBTTTTBSHHHHHHHHHHHHHT
T ss_pred             CCEEEEEcCCCCCCHHHHHHHHHHHHHH
Confidence            3689999999999999999999887654

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=99.89  E-value=1.1e-22  Score=144.96  Aligned_cols=155  Identities=19%  Similarity=0.119  Sum_probs=98.7

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEE---eCCceEEEeCCCCccccchhHHHHHHHHHHHH
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE   96 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~   96 (198)
                      ...+|+++|.+|+|||||+++|++........+..+.+.......   ....+.+|||||....          ......
T Consensus        14 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----------~~~~~~   83 (195)
T 1x3s_A           14 TTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERF----------RTLTPS   83 (195)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGG----------CCSHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhh----------hhhhHH
Confidence            357899999999999999999998742111122222222222222   2357999999996432          112223


Q ss_pred             HHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHh----hCCcEEEEEeccCCCCcH-HHHHHHHHHHHHHHhccCCCCC
Q 029158           97 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPI-DVARRAMQIEESLKANNSLVQP  170 (198)
Q Consensus        97 ~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~----~~~p~iiv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~  170 (198)
                      ++.   .+|++++|+|++....... ..++..+..    .+.|+++|+||+|+.... ..++.    .+....   ...+
T Consensus        84 ~~~---~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~----~~~~~~---~~~~  153 (195)
T 1x3s_A           84 YYR---GAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEG----LKFARK---HSML  153 (195)
T ss_dssp             HHT---TCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHH----HHHHHH---TTCE
T ss_pred             Hhc---cCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccccCHHHH----HHHHHH---cCCE
Confidence            333   3899999999986322222 234455543    368999999999995432 11111    111111   2468


Q ss_pred             cEEeccCCCCChHHHHHHHHHhhc
Q 029158          171 VMMVSSKSGAGIRSLRTVLSKIAR  194 (198)
Q Consensus       171 v~~~Sa~~~~gi~~l~~~i~~~~~  194 (198)
                      ++++||+++.|+++++++|.+.+.
T Consensus       154 ~~~~Sa~~~~gi~~l~~~l~~~~~  177 (195)
T 1x3s_A          154 FIEASAKTCDGVQCAFEELVEKII  177 (195)
T ss_dssp             EEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             EEEecCCCCCCHHHHHHHHHHHHH
Confidence            999999999999999999988664

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=99.89  E-value=8.7e-24  Score=151.71  Aligned_cols=160  Identities=15%  Similarity=0.074  Sum_probs=98.0

Q ss_pred             CCCCCCCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE-----EEEeCCceEEEeCCCCccccchhHHHH
Q 029158           14 SSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN-----FFKLGTKLCLVDLPGYGFAYAKEEVKD   88 (198)
Q Consensus        14 ~~~~~~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~-----~~~~~~~~~iiDtpG~~~~~~~~~~~~   88 (198)
                      +..+....++|+++|.+|+|||||+++|++...   ...+.+++....     +......+.+|||||.....       
T Consensus        17 q~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------   86 (201)
T 3oes_A           17 QGMPLVRYRKVVILGYRCVGKTSLAHQFVEGEF---SEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYS-------   86 (201)
T ss_dssp             ------CEEEEEEEESTTSSHHHHHHHHHHSCC---CSCCCCCSEEEEEEEEC----CEEEEEEEECCCCTTC-------
T ss_pred             CCCCCCCcEEEEEECCCCcCHHHHHHHHHhCCC---CCCCCCccceEEEEEEEECCEEEEEEEEECCCccchH-------
Confidence            334455678999999999999999999998742   233333332211     11224668999999964321       


Q ss_pred             HHHHHHHHHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHh----hCCcEEEEEeccCCCCcHHHH-HHHHHHHHHHH
Q 029158           89 AWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPIDVA-RRAMQIEESLK  162 (198)
Q Consensus        89 ~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~----~~~p~iiv~nK~Dl~~~~~~~-~~~~~~~~~~~  162 (198)
                         .+...+   ...+|++++|+|+++...... ..++..+..    .+.|+++|+||+|+....... .....+.... 
T Consensus        87 ---~~~~~~---~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~-  159 (201)
T 3oes_A           87 ---ILPYSF---IIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESW-  159 (201)
T ss_dssp             ---CCCGGG---TTTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHH-
T ss_pred             ---HHHHHH---HhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHh-
Confidence               111122   234899999999986211111 233444432    268999999999997543221 1111222211 


Q ss_pred             hccCCCCCcEEeccCCCCChHHHHHHHHHhhcc
Q 029158          163 ANNSLVQPVMMVSSKSGAGIRSLRTVLSKIARF  195 (198)
Q Consensus       163 ~~~~~~~~v~~~Sa~~~~gi~~l~~~i~~~~~~  195 (198)
                           +.+++++||++|.|+++++++|.+.+..
T Consensus       160 -----~~~~~~~Sa~~~~~v~~l~~~l~~~i~~  187 (201)
T 3oes_A          160 -----GATFMESSARENQLTQGIFTKVIQEIAR  187 (201)
T ss_dssp             -----TCEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred             -----CCeEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence                 4689999999999999999999887643

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=99.89  E-value=7.6e-23  Score=147.86  Aligned_cols=155  Identities=15%  Similarity=0.053  Sum_probs=100.2

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEE---EEEEe--CCceEEEeCCCCccccchhHHHHHHHHH
Q 029158           19 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---NFFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEEL   93 (198)
Q Consensus        19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~---~~~~~--~~~~~iiDtpG~~~~~~~~~~~~~~~~~   93 (198)
                      ....+|+++|.+|+|||||+++|++...   ...+.+++.+.   .+...  ...+.+|||||...-          ..+
T Consensus         7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----------~~~   73 (212)
T 2j0v_A            7 SKFIKCVTVGDGAVGKTCMLICYTSNKF---PTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDY----------SRL   73 (212)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHSCC---CSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCC----------CC-
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCC---CccCCCccceeEEEEEEECCEEEEEEEEECCCcHHH----------HHH
Confidence            3567999999999999999999998732   23333333221   11111  247899999997432          111


Q ss_pred             HHHHHhcccccceEEEEEeCCCCCCcCc--HHHHHHHHhh--CCcEEEEEeccCCCCcHHH---------HHHHHHHHHH
Q 029158           94 VKEYVSTRVSLKRVCLLIDTKWGVKPRD--HELISLMERS--QTKYQVVLTKTDTVFPIDV---------ARRAMQIEES  160 (198)
Q Consensus        94 ~~~~~~~~~~~d~vi~v~d~~~~~~~~~--~~~~~~~~~~--~~p~iiv~nK~Dl~~~~~~---------~~~~~~~~~~  160 (198)
                      ...++   ..+|++++|+|+++......  ..++..+...  +.|+++|+||+|+......         .+....+.+.
T Consensus        74 ~~~~~---~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~  150 (212)
T 2j0v_A           74 RPLSY---RGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQ  150 (212)
T ss_dssp             -CGGG---TTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHH
T ss_pred             HHhhc---cCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHH
Confidence            11222   34899999999976322222  1355555544  7999999999999765432         1111222222


Q ss_pred             HHhccCCCCCcEEeccCCCCChHHHHHHHHHhhc
Q 029158          161 LKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR  194 (198)
Q Consensus       161 ~~~~~~~~~~v~~~Sa~~~~gi~~l~~~i~~~~~  194 (198)
                      +.     ..+++++||++|+|+++++++|.+.+.
T Consensus       151 ~~-----~~~~~~~Sa~~g~gi~~l~~~l~~~~~  179 (212)
T 2j0v_A          151 IG-----AAAYIECSSKTQQNVKAVFDTAIKVVL  179 (212)
T ss_dssp             HT-----CSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             cC-----CceEEEccCCCCCCHHHHHHHHHHHHh
Confidence            11     248999999999999999999988654

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=99.89  E-value=1e-22  Score=146.07  Aligned_cols=156  Identities=12%  Similarity=0.077  Sum_probs=94.4

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEe---CCceEEEeCCCCccccchhHHHHHHHHHHHH
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE   96 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~   96 (198)
                      ...+|+++|.+|+|||||+++|++........+..+.+........   ...+.+|||||...          +......
T Consensus        24 ~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~----------~~~~~~~   93 (200)
T 2o52_A           24 FLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQER----------FRSVTRS   93 (200)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHH----------HSCCCHH
T ss_pred             cceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHh----------HHHHHHH
Confidence            3579999999999999999999987321111111111111122222   25799999999421          1222233


Q ss_pred             HHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHh---hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcE
Q 029158           97 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVM  172 (198)
Q Consensus        97 ~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~---~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~  172 (198)
                      ++.   .+|++++|+|+++...... ..++..+..   .+.|+++|+||+|+........  ....+....   .+.+++
T Consensus        94 ~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~--~~~~~~~~~---~~~~~~  165 (200)
T 2o52_A           94 YYR---GAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTF--LEASRFAQE---NELMFL  165 (200)
T ss_dssp             HHT---TCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCH--HHHHHHHHH---TTCEEE
T ss_pred             Hhc---cCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccccCH--HHHHHHHHH---cCCEEE
Confidence            333   3899999999986322222 234444433   3689999999999964322110  111111111   247899


Q ss_pred             EeccCCCCChHHHHHHHHHhh
Q 029158          173 MVSSKSGAGIRSLRTVLSKIA  193 (198)
Q Consensus       173 ~~Sa~~~~gi~~l~~~i~~~~  193 (198)
                      ++||++|.|+++++++|.+.+
T Consensus       166 ~~SA~~g~gi~~l~~~l~~~i  186 (200)
T 2o52_A          166 ETSALTGENVEEAFLKCARTI  186 (200)
T ss_dssp             EECTTTCTTHHHHHHHHHHHH
T ss_pred             EEeCCCCCCHHHHHHHHHHHH
Confidence            999999999999999998765

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=99.89  E-value=5e-22  Score=151.34  Aligned_cols=162  Identities=15%  Similarity=0.079  Sum_probs=104.4

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEe----CCceEEEeCCCCccccchhHHHHHHHHHHHH
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL----GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE   96 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~----~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~   96 (198)
                      ..+|+++|.+|+|||||++++++. ......+.+++|.+..+...    +..+.+|||||...-     ...........
T Consensus         3 ~~KI~lvG~~~vGKSSLi~~l~~~-~~~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~-----~~~~~~~~~~~   76 (307)
T 3r7w_A            3 GSKLLLMGRSGSGKSSMRSIIFSN-YSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVF-----MENYFTKQKDH   76 (307)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHSC-CCTGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSHHH-----HHHHHTTTHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhC-CCCccccCcCCccceEEEEEEeCCceEEEEEECCCcHHH-----hhhhhhhHHHH
Confidence            468999999999999999999987 33444556667766554332    467999999996210     00000122333


Q ss_pred             HHhcccccceEEEEEeCCCCCCcCcH-HHHHHH---Hhh--CCcEEEEEeccCCCCcHHHH----HHHHHHHHHHHhccC
Q 029158           97 YVSTRVSLKRVCLLIDTKWGVKPRDH-ELISLM---ERS--QTKYQVVLTKTDTVFPIDVA----RRAMQIEESLKANNS  166 (198)
Q Consensus        97 ~~~~~~~~d~vi~v~d~~~~~~~~~~-~~~~~~---~~~--~~p~iiv~nK~Dl~~~~~~~----~~~~~~~~~~~~~~~  166 (198)
                      ++.   .+|++++|+|+++.....+. .+...+   ...  +.|+++|+||+|+.......    ...+.+++.......
T Consensus        77 ~~~---~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~  153 (307)
T 3r7w_A           77 IFQ---MVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGF  153 (307)
T ss_dssp             HHT---TCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             Hhc---cCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCC
Confidence            333   38999999999874332332 223333   222  79999999999999854443    222334443333221


Q ss_pred             CCCCcEEeccCCCCChHHHHHHHHHh
Q 029158          167 LVQPVMMVSSKSGAGIRSLRTVLSKI  192 (198)
Q Consensus       167 ~~~~v~~~Sa~~~~gi~~l~~~i~~~  192 (198)
                      ...+++++||++ .|+.+++..+...
T Consensus       154 ~~~~~~~tSa~~-~~i~e~~~~iv~~  178 (307)
T 3r7w_A          154 PNLIGFPTSIWD-ESLYKAWSQIVCS  178 (307)
T ss_dssp             CSCEEEECCTTS-SHHHHHHHHHHHT
T ss_pred             CCeEEEEeeecC-ChHHHHHHHHHHH
Confidence            137899999999 7888888776653

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=99.89  E-value=8.7e-22  Score=153.00  Aligned_cols=163  Identities=21%  Similarity=0.218  Sum_probs=110.0

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEE---eCCceEEEeCCCCccccchhHHHHHHHHHHH
Q 029158           19 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVK   95 (198)
Q Consensus        19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~   95 (198)
                      ...++|+++|.+|+|||||+++|++..  ....+.+++|.......   .+..+.+|||||+.+.......... ..   
T Consensus       165 ~~~~~v~lvG~~gvGKSTLin~L~~~~--~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~-~~---  238 (357)
T 2e87_A          165 LEIPTVVIAGHPNVGKSTLLKALTTAK--PEIASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPISERNEIE-KQ---  238 (357)
T ss_dssp             SSSCEEEEECSTTSSHHHHHHHHCSSC--CEEECCTTCSSCEEEEEEEETTEEEEEEECTTTSSSCSTTSCHHH-HH---
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCC--CccCCCCCeeeceeEEEEEecCceEEEEeCCCccccchhhhhHHH-HH---
Confidence            467799999999999999999999974  44566677776655433   2467999999998553211100000 11   


Q ss_pred             HHHhcccccceEEEEEeCCCCC--CcC-cHHHHHHHHh-h-CCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCC
Q 029158           96 EYVSTRVSLKRVCLLIDTKWGV--KPR-DHELISLMER-S-QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQP  170 (198)
Q Consensus        96 ~~~~~~~~~d~vi~v~d~~~~~--~~~-~~~~~~~~~~-~-~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (198)
                      ........+|.+++|+|++...  ... ..+++..+.. . +.|+++|+||+|+....+.++....+.       ....+
T Consensus       239 ~~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~-------~~~~~  311 (357)
T 2e87_A          239 AILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVADEENIKRLEKFVK-------EKGLN  311 (357)
T ss_dssp             HHHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTCCHHHHHHHHHHHH-------HTTCC
T ss_pred             HHHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccCChHHHHHHHHHHH-------hcCCC
Confidence            1112223489999999987632  211 2344555443 2 799999999999987665433222221       12478


Q ss_pred             cEEeccCCCCChHHHHHHHHHhhc
Q 029158          171 VMMVSSKSGAGIRSLRTVLSKIAR  194 (198)
Q Consensus       171 v~~~Sa~~~~gi~~l~~~i~~~~~  194 (198)
                      ++++||++|+|+++++++|.+.+.
T Consensus       312 ~~~iSA~~g~gi~~l~~~i~~~l~  335 (357)
T 2e87_A          312 PIKISALKGTGIDLVKEEIIKTLR  335 (357)
T ss_dssp             CEECBTTTTBTHHHHHHHHHHHHH
T ss_pred             eEEEeCCCCcCHHHHHHHHHHHHH
Confidence            999999999999999999988764

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=99.88  E-value=5.3e-23  Score=149.13  Aligned_cols=158  Identities=15%  Similarity=0.033  Sum_probs=98.6

Q ss_pred             CCCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEE-E----EEEeCCceEEEeCCCCccccchhHHHHHHHH
Q 029158           18 APDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI-N----FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEE   92 (198)
Q Consensus        18 ~~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~-~----~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~   92 (198)
                      .....+|+++|.+|+|||||+++|++..   ....+.+++... .    +......+.+|||||....          ..
T Consensus        24 ~~~~~ki~vvG~~~vGKSsL~~~l~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~----------~~   90 (214)
T 3q3j_B           24 VVARCKLVLVGDVQCGKTAMLQVLAKDC---YPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYY----------DN   90 (214)
T ss_dssp             ---CEEEEEECSTTSSHHHHHHHHHHSC---CCSSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGG----------TT
T ss_pred             ccceEEEEEECcCCCCHHHHHHHHhcCC---CCCCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhH----------HH
Confidence            3456899999999999999999999873   223333333221 1    1112357899999996321          11


Q ss_pred             HHHHHHhcccccceEEEEEeCCCCCCcCc--HHHHHHHHhh--CCcEEEEEeccCCCCcHHHH----------HHHHHHH
Q 029158           93 LVKEYVSTRVSLKRVCLLIDTKWGVKPRD--HELISLMERS--QTKYQVVLTKTDTVFPIDVA----------RRAMQIE  158 (198)
Q Consensus        93 ~~~~~~~~~~~~d~vi~v~d~~~~~~~~~--~~~~~~~~~~--~~p~iiv~nK~Dl~~~~~~~----------~~~~~~~  158 (198)
                      +...+   ...+|++++|+|+++......  ..++..+...  +.|+++|+||+|+.......          ...+...
T Consensus        91 ~~~~~---~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~  167 (214)
T 3q3j_B           91 VRPLC---YSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGC  167 (214)
T ss_dssp             TGGGG---CTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHH
T ss_pred             HHHHH---cCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHH
Confidence            12222   234899999999987322222  2455555554  78999999999997531100          0011111


Q ss_pred             HHHHhccCCCC-CcEEeccCCCCC-hHHHHHHHHHhhc
Q 029158          159 ESLKANNSLVQ-PVMMVSSKSGAG-IRSLRTVLSKIAR  194 (198)
Q Consensus       159 ~~~~~~~~~~~-~v~~~Sa~~~~g-i~~l~~~i~~~~~  194 (198)
                      +.....   +. +++++||++|.| +++++++|.+.+.
T Consensus       168 ~~~~~~---~~~~~~e~SA~~g~g~v~~lf~~l~~~~~  202 (214)
T 3q3j_B          168 AIAKQL---GAEIYLEGSAFTSEKSIHSIFRTASMLCL  202 (214)
T ss_dssp             HHHHHH---TCSEEEECCTTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHc---CCCEEEEeccCCCcccHHHHHHHHHHHHh
Confidence            111111   35 899999999998 9999999988654

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=99.88  E-value=3e-22  Score=157.58  Aligned_cols=161  Identities=18%  Similarity=0.232  Sum_probs=115.3

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCccc---e-----------eecCCCCceeEEEE---EEeCCceEEEeCCCCccccch
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQWGV---V-----------RTSDKPGLTQTINF---FKLGTKLCLVDLPGYGFAYAK   83 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~~~~---~-----------~~~~~~~~t~~~~~---~~~~~~~~iiDtpG~~~~~~~   83 (198)
                      ..+|+++|.+++|||||+++|++....   .           ......+.|.+...   ...+..+.+|||||+      
T Consensus         3 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~------   76 (397)
T 1d2e_A            3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGH------   76 (397)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSH------
T ss_pred             eEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCCh------
Confidence            368999999999999999999874100   0           00112345554332   223578999999996      


Q ss_pred             hHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCc-EEEEEeccCCCCcH-HHHHHHHHHHHHH
Q 029158           84 EEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKTDTVFPI-DVARRAMQIEESL  161 (198)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~~-~~~~~~~~~~~~~  161 (198)
                             ..+...+......+|++++|+|++++......+++..+...++| +++|+||+|+.... ..+...+++++.+
T Consensus        77 -------~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l  149 (397)
T 1d2e_A           77 -------ADYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADAVQDSEMVELVELEIRELL  149 (397)
T ss_dssp             -------HHHHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHH
T ss_pred             -------HHHHHHHHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCeEEEEEECcccCCCHHHHHHHHHHHHHHH
Confidence                   34455666677789999999999998777777778777777899 68999999998533 2334445555555


Q ss_pred             HhccC--CCCCcEEeccCCCCC----------hHHHHHHHHHhhc
Q 029158          162 KANNS--LVQPVMMVSSKSGAG----------IRSLRTVLSKIAR  194 (198)
Q Consensus       162 ~~~~~--~~~~v~~~Sa~~~~g----------i~~l~~~i~~~~~  194 (198)
                      .....  ...+++++||++|.|          +++|++.|.+.++
T Consensus       150 ~~~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p  194 (397)
T 1d2e_A          150 TEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIP  194 (397)
T ss_dssp             HHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSC
T ss_pred             HHcCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCC
Confidence            44321  247999999999764          8899999988664

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=99.88  E-value=1.4e-22  Score=145.77  Aligned_cols=155  Identities=16%  Similarity=0.105  Sum_probs=97.7

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEE--EEEEe---CCceEEEeCCCCccccchhHHHHHHHHHH
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI--NFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELV   94 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~--~~~~~---~~~~~iiDtpG~~~~~~~~~~~~~~~~~~   94 (198)
                      ...+|+++|.+|+|||||+++|++....  ....+..+.+.  .....   ...+.+|||||....          ....
T Consensus         7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~----------~~~~   74 (206)
T 2bcg_Y            7 YLFKLLLIGNSGVGKSCLLLRFSDDTYT--NDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERF----------RTIT   74 (206)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHCCCC--TTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTT----------TCCC
T ss_pred             cceEEEEECCCCCCHHHHHHHHhcCCCC--CCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHH----------HHHH
Confidence            4579999999999999999999987411  11122222222  11222   247999999996331          1111


Q ss_pred             HHHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHh---hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCC
Q 029158           95 KEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQP  170 (198)
Q Consensus        95 ~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~---~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (198)
                      ..+   ...+|++++|+|+++...... ..++..+..   .+.|+++|+||+|+........  +...+....   .+.+
T Consensus        75 ~~~---~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~--~~~~~~~~~---~~~~  146 (206)
T 2bcg_Y           75 SSY---YRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEY--DVAKEFADA---NKMP  146 (206)
T ss_dssp             GGG---GTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCH--HHHHHHHHH---TTCC
T ss_pred             HHh---ccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCH--HHHHHHHHH---cCCe
Confidence            122   234899999999986322111 223444443   2589999999999976432110  111111111   2478


Q ss_pred             cEEeccCCCCChHHHHHHHHHhhc
Q 029158          171 VMMVSSKSGAGIRSLRTVLSKIAR  194 (198)
Q Consensus       171 v~~~Sa~~~~gi~~l~~~i~~~~~  194 (198)
                      ++++||++|+|+++++++|.+.+.
T Consensus       147 ~~~~Sa~~g~gi~~l~~~l~~~i~  170 (206)
T 2bcg_Y          147 FLETSALDSTNVEDAFLTMARQIK  170 (206)
T ss_dssp             EEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHHH
Confidence            999999999999999999988664

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=99.88  E-value=1.7e-23  Score=152.31  Aligned_cols=158  Identities=13%  Similarity=0.020  Sum_probs=105.4

Q ss_pred             CCCCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEe---CCceEEEeCCCCccccchhHHHHHHHHH
Q 029158           17 PAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEEL   93 (198)
Q Consensus        17 ~~~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~~~iiDtpG~~~~~~~~~~~~~~~~~   93 (198)
                      .+....+|+++|.+|+|||||+++++.........+..+++........   ...+.+|||||....          ..+
T Consensus        11 ~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----------~~~   80 (221)
T 3gj0_A           11 EPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKF----------GGL   80 (221)
T ss_dssp             CCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGT----------SCC
T ss_pred             CcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHH----------hHH
Confidence            3455679999999999999999997655334455566666655443332   357899999995321          111


Q ss_pred             HHHHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHhh--CCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCC
Q 029158           94 VKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS--QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQP  170 (198)
Q Consensus        94 ~~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~~--~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (198)
                      ...++.   .+|++++|+|+++...... ..++..+...  +.|+++|+||+|+.......+.....+.       .+.+
T Consensus        81 ~~~~~~---~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~-------~~~~  150 (221)
T 3gj0_A           81 RDGYYI---QAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRK-------KNLQ  150 (221)
T ss_dssp             CHHHHT---TCCEEEEEEETTCHHHHHTHHHHHHHHHHHSTTCCEEEEEECTTSSSCSSCGGGCCHHHH-------HTCE
T ss_pred             HHHHHh---cCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCccccccccHHHHHHHHH-------cCCE
Confidence            223333   3899999999987322222 2344444443  7899999999999764322111111111       1478


Q ss_pred             cEEeccCCCCChHHHHHHHHHhhc
Q 029158          171 VMMVSSKSGAGIRSLRTVLSKIAR  194 (198)
Q Consensus       171 v~~~Sa~~~~gi~~l~~~i~~~~~  194 (198)
                      ++++||++|.|+++++++|.+.+.
T Consensus       151 ~~~~Sa~~~~gi~~l~~~l~~~l~  174 (221)
T 3gj0_A          151 YYDISAKSNYNFEKPFLWLARKLI  174 (221)
T ss_dssp             EEECBGGGTBTTTHHHHHHHHHHH
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHHH
Confidence            999999999999999999988753

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=99.88  E-value=4.6e-22  Score=144.22  Aligned_cols=154  Identities=18%  Similarity=0.151  Sum_probs=96.8

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE-------EEEe----------CCceEEEeCCCCcccc
Q 029158           19 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN-------FFKL----------GTKLCLVDLPGYGFAY   81 (198)
Q Consensus        19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~-------~~~~----------~~~~~iiDtpG~~~~~   81 (198)
                      +...+|+++|.+|+|||||+++|++....    ....+|....       +...          ...+.+|||||.    
T Consensus        23 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~----~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~----   94 (217)
T 2f7s_A           23 DYLIKLLALGDSGVGKTTFLYRYTDNKFN----PKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQ----   94 (217)
T ss_dssp             SEEEEEEEESCTTSSHHHHHHHHHCSCCC----CEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESH----
T ss_pred             ceeEEEEEECcCCCCHHHHHHHHhcCCCC----cCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCc----
Confidence            34579999999999999999999987321    1111222111       1111          356999999994    


Q ss_pred             chhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHh----hCCcEEEEEeccCCCCcHHHHHHHHH
Q 029158           82 AKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPIDVARRAMQ  156 (198)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~----~~~p~iiv~nK~Dl~~~~~~~~~~~~  156 (198)
                            +.+......++.   .+|++++|+|++....... ..++..+..    .+.|+++|+||+|+.......  .+.
T Consensus        95 ------~~~~~~~~~~~~---~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~--~~~  163 (217)
T 2f7s_A           95 ------ERFRSLTTAFFR---DAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVN--ERQ  163 (217)
T ss_dssp             ------HHHHHHHHHHHT---TCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSC--HHH
T ss_pred             ------HhHHhHHHHHhc---CCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccC--HHH
Confidence                  222333444444   3899999999976321111 122332322    368999999999997532211  011


Q ss_pred             HHHHHHhccCCCCCcEEeccCCCCChHHHHHHHHHhhc
Q 029158          157 IEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR  194 (198)
Q Consensus       157 ~~~~~~~~~~~~~~v~~~Sa~~~~gi~~l~~~i~~~~~  194 (198)
                      .++....   .+.+++++||++++|+++++++|.+.+.
T Consensus       164 ~~~~~~~---~~~~~~~~Sa~~g~gi~~l~~~l~~~i~  198 (217)
T 2f7s_A          164 ARELADK---YGIPYFETSAATGQNVEKAVETLLDLIM  198 (217)
T ss_dssp             HHHHHHH---TTCCEEEEBTTTTBTHHHHHHHHHHHHH
T ss_pred             HHHHHHH---CCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence            2222211   1478999999999999999999987653

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=99.88  E-value=7e-23  Score=144.63  Aligned_cols=153  Identities=15%  Similarity=0.115  Sum_probs=76.5

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE--EEEe---CCceEEEeCCCCccccchhHHHHHHHHHH
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELV   94 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~--~~~~---~~~~~iiDtpG~~~~~~~~~~~~~~~~~~   94 (198)
                      ...+|+++|.+|+|||||+++|++...  .....+.++.+..  ....   ...+.+|||||...          +....
T Consensus         7 ~~~ki~v~G~~~~GKssl~~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----------~~~~~   74 (183)
T 2fu5_C            7 YLFKLLLIGDSGVGKTCVLFRFSEDAF--NSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQER----------FRTIT   74 (183)
T ss_dssp             EEEEEEEECCCCC------------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC-------------------C
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCCC--CCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChh----------hhhhH
Confidence            457899999999999999999997631  1111122222222  1111   25799999999522          11112


Q ss_pred             HHHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHhh---CCcEEEEEeccCCCCcHH--HHHHHHHHHHHHHhccCCC
Q 029158           95 KEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS---QTKYQVVLTKTDTVFPID--VARRAMQIEESLKANNSLV  168 (198)
Q Consensus        95 ~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~~---~~p~iiv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~  168 (198)
                      .   .....+|++++|+|+++...... ..++..+...   +.|+++|+||+|+.....  .++. ..+.+..      +
T Consensus        75 ~---~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~-~~~~~~~------~  144 (183)
T 2fu5_C           75 T---AYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERG-EKLALDY------G  144 (183)
T ss_dssp             C---TTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHH-HHHHHHH------T
T ss_pred             H---HHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCCHHHH-HHHHHHc------C
Confidence            2   22345899999999986322111 2344444442   689999999999975422  1111 1222111      3


Q ss_pred             CCcEEeccCCCCChHHHHHHHHHhhc
Q 029158          169 QPVMMVSSKSGAGIRSLRTVLSKIAR  194 (198)
Q Consensus       169 ~~v~~~Sa~~~~gi~~l~~~i~~~~~  194 (198)
                      .+++++||++|+|+++++++|.+.+.
T Consensus       145 ~~~~~~Sa~~~~~i~~l~~~l~~~i~  170 (183)
T 2fu5_C          145 IKFMETSAKANINVENAFFTLARDIK  170 (183)
T ss_dssp             CEEEECCC---CCHHHHHHHHHHHHH
T ss_pred             CeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            68999999999999999999987653

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=99.88  E-value=4.8e-23  Score=158.33  Aligned_cols=155  Identities=17%  Similarity=0.170  Sum_probs=99.9

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE---EEEeCCceEEEeCCCCccccchhHHHHHHHHHHHHH
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY   97 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~---~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~   97 (198)
                      ..+|+++|.+|+|||||+++|++.. ...  ..+  |....   +...+..+.+|||||...          +..+...+
T Consensus       165 ~~kI~ivG~~~vGKSsLl~~l~~~~-~~~--~~p--T~~~~~~~~~~~~~~l~i~Dt~G~~~----------~~~~~~~~  229 (329)
T 3o47_A          165 EMRILMVGLDAAGKTTILYKLKLGE-IVT--TIP--TIGFNVETVEYKNISFTVWDVGGQDK----------IRPLWRHY  229 (329)
T ss_dssp             SEEEEEEESTTSSHHHHHHHTCSSC-CEE--EEE--ETTEEEEEEEETTEEEEEEECC---------------CCSHHHH
T ss_pred             cceEEEECCCCccHHHHHHHHhCCC-CCC--ccc--ccceEEEEEecCcEEEEEEECCCCHh----------HHHHHHHH
Confidence            4589999999999999999999874 222  121  32222   223367899999999422          12223344


Q ss_pred             HhcccccceEEEEEeCCCCCCcC--cHHHHHHHHhh---CCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcE
Q 029158           98 VSTRVSLKRVCLLIDTKWGVKPR--DHELISLMERS---QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVM  172 (198)
Q Consensus        98 ~~~~~~~d~vi~v~d~~~~~~~~--~~~~~~~~~~~---~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~  172 (198)
                      +..   +|++++|+|+++.....  ...+...+...   +.|+++|+||+|+......++....+...  .......+++
T Consensus       230 ~~~---ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~i~~~~~~~--~~~~~~~~~~  304 (329)
T 3o47_A          230 FQN---TQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLH--SLRHRNWYIQ  304 (329)
T ss_dssp             HTT---EEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTCT--TCCSSCEEEE
T ss_pred             hcc---CCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccCHHHHHHHhchh--hhhcCCCEEE
Confidence            443   89999999997632211  12233333332   78999999999998765443333332211  1122356799


Q ss_pred             EeccCCCCChHHHHHHHHHhhcc
Q 029158          173 MVSSKSGAGIRSLRTVLSKIARF  195 (198)
Q Consensus       173 ~~Sa~~~~gi~~l~~~i~~~~~~  195 (198)
                      ++||++|.|+++++++|.+.+..
T Consensus       305 ~vSAk~g~gi~el~~~l~~~l~~  327 (329)
T 3o47_A          305 ATCATSGDGLYEGLDWLSNQLRN  327 (329)
T ss_dssp             ECBTTTTBTHHHHHHHHHHHHTC
T ss_pred             EEECCCCcCHHHHHHHHHHHHHh
Confidence            99999999999999999987653

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=99.88  E-value=1.7e-23  Score=150.51  Aligned_cols=156  Identities=15%  Similarity=0.086  Sum_probs=69.6

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCcee-EEE---EEEe----CCceEEEeCCCCccccchhHHHHHHH
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQ-TIN---FFKL----GTKLCLVDLPGYGFAYAKEEVKDAWE   91 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~-~~~---~~~~----~~~~~iiDtpG~~~~~~~~~~~~~~~   91 (198)
                      ...+|+++|.+|+|||||+++|++.. ......+.+++. +..   +...    ...+.+|||||..             
T Consensus        19 ~~~~i~v~G~~~~GKssli~~l~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~-------------   84 (208)
T 2yc2_C           19 LRCKVAVVGEATVGKSALISMFTSKG-SKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSD-------------   84 (208)
T ss_dssp             EEEEEEEC-----------------------------------CEEEECTTSSEEEEEEEEETTTTH-------------
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCC-CcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcH-------------
Confidence            45799999999999999999999871 122233333332 211   1111    2368999999962             


Q ss_pred             HHHHHHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHh------hCCcEEEEEeccCCCC-cHHHHHHHHHHHHHHHh
Q 029158           92 ELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER------SQTKYQVVLTKTDTVF-PIDVARRAMQIEESLKA  163 (198)
Q Consensus        92 ~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~------~~~p~iiv~nK~Dl~~-~~~~~~~~~~~~~~~~~  163 (198)
                      .+..........+|++++|+|+++...... ..++..+..      .+.|+++|+||+|+.. .....  .+..++....
T Consensus        85 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~--~~~~~~~~~~  162 (208)
T 2yc2_C           85 LYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVR--LDMAQDWATT  162 (208)
T ss_dssp             HHHHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCC--HHHHHHHHHH
T ss_pred             HHHHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCC--HHHHHHHHHH
Confidence            112223333455899999999986322111 234555543      3789999999999976 32210  1122222222


Q ss_pred             ccCCCCCcEEeccCC-CCChHHHHHHHHHhhc
Q 029158          164 NNSLVQPVMMVSSKS-GAGIRSLRTVLSKIAR  194 (198)
Q Consensus       164 ~~~~~~~v~~~Sa~~-~~gi~~l~~~i~~~~~  194 (198)
                      .   +.+++++||++ +.|+++++++|.+.+.
T Consensus       163 ~---~~~~~~~Sa~~~~~gi~~l~~~i~~~~~  191 (208)
T 2yc2_C          163 N---TLDFFDVSANPPGKDADAPFLSIATTFY  191 (208)
T ss_dssp             T---TCEEEECCC-------CHHHHHHHHHHH
T ss_pred             c---CCEEEEeccCCCCcCHHHHHHHHHHHHH
Confidence            1   37899999999 9999999999988653

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.88  E-value=2.7e-22  Score=159.55  Aligned_cols=153  Identities=15%  Similarity=0.195  Sum_probs=102.7

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCccc---------eeecCC----------------------CCceeEEEE---EE
Q 029158           19 PDLPEIAFAGRSNVGKSSMLNALTRQWGV---------VRTSDK----------------------PGLTQTINF---FK   64 (198)
Q Consensus        19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~~---------~~~~~~----------------------~~~t~~~~~---~~   64 (198)
                      ....+|+++|.+++|||||+++|++....         ...+..                      .+.|.+..+   ..
T Consensus        22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~  101 (434)
T 1zun_B           22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST  101 (434)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred             CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec
Confidence            34578999999999999999999865210         001111                      123333222   22


Q ss_pred             eCCceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCC-cEEEEEeccC
Q 029158           65 LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQT-KYQVVLTKTD  143 (198)
Q Consensus        65 ~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~-p~iiv~nK~D  143 (198)
                      .+..+.+|||||+.+             +...+......+|++++|+|++++......+++..+...+. |+++|+||+|
T Consensus       102 ~~~~~~iiDtpGh~~-------------f~~~~~~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~~~~~~iIvviNK~D  168 (434)
T 1zun_B          102 AKRKFIIADTPGHEQ-------------YTRNMATGASTCDLAIILVDARYGVQTQTRRHSYIASLLGIKHIVVAINKMD  168 (434)
T ss_dssp             SSEEEEEEECCCSGG-------------GHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEEECTT
T ss_pred             CCceEEEEECCChHH-------------HHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEEcCc
Confidence            356799999999732             12223333456999999999999877777777777776676 5899999999


Q ss_pred             CCCc--HHHHHHHHHHHHHHHhcc--CCCCCcEEeccCCCCChHH
Q 029158          144 TVFP--IDVARRAMQIEESLKANN--SLVQPVMMVSSKSGAGIRS  184 (198)
Q Consensus       144 l~~~--~~~~~~~~~~~~~~~~~~--~~~~~v~~~Sa~~~~gi~~  184 (198)
                      +...  ...+...+.+++.+....  ....+++++||++|+|+++
T Consensus       169 l~~~~~~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~  213 (434)
T 1zun_B          169 LNGFDERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVN  213 (434)
T ss_dssp             TTTSCHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSS
T ss_pred             CCcccHHHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCccc
Confidence            9863  333444555555554443  2347899999999999987

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=99.88  E-value=3e-22  Score=143.49  Aligned_cols=160  Identities=11%  Similarity=-0.007  Sum_probs=96.0

Q ss_pred             CCCCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE---EEEeC--CceEEEeCCCCccccchhHHHHHHH
Q 029158           17 PAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLG--TKLCLVDLPGYGFAYAKEEVKDAWE   91 (198)
Q Consensus        17 ~~~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~---~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~   91 (198)
                      ......+|+++|.+|+|||||+++|++..   ....+.+|+.+..   +...+  ..+.+|||||.....          
T Consensus        16 ~~~~~~ki~~~G~~~~GKssl~~~l~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~----------   82 (201)
T 2q3h_A           16 AEGRGVKCVLVGDGAVGKTSLVVSYTTNG---YPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFD----------   82 (201)
T ss_dssp             ----CEEEEEECSTTSSHHHHHHHHHC-----------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCS----------
T ss_pred             CCCcceEEEEECCCCCCHHHHHHHHHhCC---CCCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHH----------
Confidence            34567899999999999999999999873   2334444443321   21122  467899999974321          


Q ss_pred             HHHHHHHhcccccceEEEEEeCCCCCCcCcH--HHHHHHHhh--CCcEEEEEeccCCCCcHHHHH----------HHHHH
Q 029158           92 ELVKEYVSTRVSLKRVCLLIDTKWGVKPRDH--ELISLMERS--QTKYQVVLTKTDTVFPIDVAR----------RAMQI  157 (198)
Q Consensus        92 ~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~--~~~~~~~~~--~~p~iiv~nK~Dl~~~~~~~~----------~~~~~  157 (198)
                      .+...++   ..+|++++|+|+++.......  .++..+...  +.|+++|+||+|+........          ..+..
T Consensus        83 ~~~~~~~---~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~  159 (201)
T 2q3h_A           83 KLRPLCY---TNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAA  159 (201)
T ss_dssp             SSGGGGG---TTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHH
T ss_pred             HHhHhhc---CCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHH
Confidence            1111222   348999999999863222222  344555443  799999999999976432110          01111


Q ss_pred             HHHHHhccCCCCCcEEeccCCCCChHHHHHHHHHhhc
Q 029158          158 EESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR  194 (198)
Q Consensus       158 ~~~~~~~~~~~~~v~~~Sa~~~~gi~~l~~~i~~~~~  194 (198)
                      .......  ...+++++||++|+|+++++++|.+.+.
T Consensus       160 ~~~~~~~--~~~~~~~~Sa~~g~gi~~l~~~l~~~~~  194 (201)
T 2q3h_A          160 KLLAEEI--KAASYIECSALTQKNLKEVFDAAIVAGI  194 (201)
T ss_dssp             HHHHHHH--TCSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             HHHHHhc--CCcEEEEEecCCCCCHHHHHHHHHHHHh
Confidence            1111111  1248999999999999999999987654

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=99.88  E-value=5.9e-22  Score=156.38  Aligned_cols=163  Identities=19%  Similarity=0.190  Sum_probs=113.7

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCc--c-----ceee--------cCCCCceeEE---EEEEeCCceEEEeCCCCccc
Q 029158           19 PDLPEIAFAGRSNVGKSSMLNALTRQW--G-----VVRT--------SDKPGLTQTI---NFFKLGTKLCLVDLPGYGFA   80 (198)
Q Consensus        19 ~~~~~v~~vG~~~~GKSsli~~l~~~~--~-----~~~~--------~~~~~~t~~~---~~~~~~~~~~iiDtpG~~~~   80 (198)
                      ....+|+++|.+++|||||+++|++..  .     ....        ....+.|.+.   .+...+..+.+|||||+.+ 
T Consensus         9 ~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~-   87 (405)
T 2c78_A            9 KPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHAD-   87 (405)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGG-
T ss_pred             CCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHH-
Confidence            345789999999999999999998730  0     0000        0012334332   2333467899999999732 


Q ss_pred             cchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCc-EEEEEeccCCCCcH-HHHHHHHHHH
Q 029158           81 YAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKTDTVFPI-DVARRAMQIE  158 (198)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~~-~~~~~~~~~~  158 (198)
                                  +...+......+|++++|+|++++......+++..+...++| +++|+||+|+.... ..+...++++
T Consensus        88 ------------f~~~~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~~~ip~iivviNK~Dl~~~~~~~~~~~~~~~  155 (405)
T 2c78_A           88 ------------YIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVR  155 (405)
T ss_dssp             ------------GHHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHTTCCCEEEEEECGGGCCCHHHHHHHHHHHH
T ss_pred             ------------HHHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEECccccCcHHHHHHHHHHHH
Confidence                        233444445569999999999998777777888888877899 88999999998533 2333444555


Q ss_pred             HHHHhccC--CCCCcEEeccCCCCC------------------hHHHHHHHHHhhc
Q 029158          159 ESLKANNS--LVQPVMMVSSKSGAG------------------IRSLRTVLSKIAR  194 (198)
Q Consensus       159 ~~~~~~~~--~~~~v~~~Sa~~~~g------------------i~~l~~~i~~~~~  194 (198)
                      +.+.....  ...+++++||++|.|                  +++|+++|.+.++
T Consensus       156 ~~l~~~~~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp  211 (405)
T 2c78_A          156 DLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIP  211 (405)
T ss_dssp             HHHHHTTSCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHhcccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcC
Confidence            55544321  247899999999987                  8889998887664

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=99.88  E-value=3.2e-22  Score=161.06  Aligned_cols=151  Identities=17%  Similarity=0.180  Sum_probs=99.9

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCcc-----------------------------ceeecCCCCceeEEE---EEEeCCc
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQWG-----------------------------VVRTSDKPGLTQTIN---FFKLGTK   68 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~~~-----------------------------~~~~~~~~~~t~~~~---~~~~~~~   68 (198)
                      ..+|+++|.+|+|||||+++|++...                             ........++|.+..   +...+..
T Consensus        33 ~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~  112 (483)
T 3p26_A           33 HLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRAN  112 (483)
T ss_dssp             EEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSSCE
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCCce
Confidence            46899999999999999999975410                             011112234554432   3334678


Q ss_pred             eEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCC-------CcCcHHHHHHHHhhC-CcEEEEEe
Q 029158           69 LCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGV-------KPRDHELISLMERSQ-TKYQVVLT  140 (198)
Q Consensus        69 ~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~-------~~~~~~~~~~~~~~~-~p~iiv~n  140 (198)
                      +.||||||+.             .+...+......+|++++|+|++++.       .....+.+..+...+ .|+|+|+|
T Consensus       113 ~~iiDTPG~~-------------~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvviN  179 (483)
T 3p26_A          113 FTIVDAPGHR-------------DFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMN  179 (483)
T ss_dssp             EEEECCCCCG-------------GGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEEE
T ss_pred             EEEEECCCcH-------------HHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEEE
Confidence            9999999982             23334444455699999999998862       234455566666666 45999999


Q ss_pred             ccCCCC--cHHHHHHHHHHHHHHHhccC--CCCCcEEeccCCCCChHH
Q 029158          141 KTDTVF--PIDVARRAMQIEESLKANNS--LVQPVMMVSSKSGAGIRS  184 (198)
Q Consensus       141 K~Dl~~--~~~~~~~~~~~~~~~~~~~~--~~~~v~~~Sa~~~~gi~~  184 (198)
                      |+|+..  ....++..+.+.+.+.....  ...+++++||++|+|+++
T Consensus       180 K~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e  227 (483)
T 3p26_A          180 KMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK  227 (483)
T ss_dssp             CGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred             CcCcccchHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence            999987  33344455555554443221  147899999999999985

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=99.88  E-value=8.8e-23  Score=148.79  Aligned_cols=158  Identities=14%  Similarity=0.099  Sum_probs=94.9

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEe---CCceEEEeCCCCccccchhHHHHHHHHHHH
Q 029158           19 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVK   95 (198)
Q Consensus        19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~   95 (198)
                      ....+|+++|.+|+|||||+++|++........+..+.+........   ...+.+|||||....          ..+..
T Consensus        11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----------~~~~~   80 (223)
T 3cpj_B           11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERY----------RAITS   80 (223)
T ss_dssp             CEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTT----------TCCCG
T ss_pred             CeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccch----------hhhHH
Confidence            45679999999999999999999987421111111111111111222   257999999996321          11111


Q ss_pred             HHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHhh---CCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCc
Q 029158           96 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS---QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPV  171 (198)
Q Consensus        96 ~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~~---~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v  171 (198)
                      .+   ...+|++++|+|++....... ..++..+...   +.|+++|+||+|+........  +...+....   .+.++
T Consensus        81 ~~---~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~--~~~~~~~~~---~~~~~  152 (223)
T 3cpj_B           81 AY---YRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPT--EESKTFAQE---NQLLF  152 (223)
T ss_dssp             GG---TTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCH--HHHHHHHHH---TTCEE
T ss_pred             HH---hccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCH--HHHHHHHHH---cCCEE
Confidence            22   234899999999986322221 2344445433   689999999999975322110  111111111   24789


Q ss_pred             EEeccCCCCChHHHHHHHHHhhc
Q 029158          172 MMVSSKSGAGIRSLRTVLSKIAR  194 (198)
Q Consensus       172 ~~~Sa~~~~gi~~l~~~i~~~~~  194 (198)
                      +++||++++|+++++++|.+.+.
T Consensus       153 ~~~Sa~~~~gi~~l~~~l~~~i~  175 (223)
T 3cpj_B          153 TETSALNSENVDKAFEELINTIY  175 (223)
T ss_dssp             EECCCC-CCCHHHHHHHHHHHHT
T ss_pred             EEEeCCCCCCHHHHHHHHHHHHH
Confidence            99999999999999999987654

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=99.87  E-value=2.2e-21  Score=137.29  Aligned_cols=159  Identities=13%  Similarity=0.101  Sum_probs=95.7

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCce-eEEEEE--------EeCCceEEEeCCCCccccchhHHHHHHH
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT-QTINFF--------KLGTKLCLVDLPGYGFAYAKEEVKDAWE   91 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t-~~~~~~--------~~~~~~~iiDtpG~~~~~~~~~~~~~~~   91 (198)
                      ..+|+++|++|+|||||+++|++.. ......+.+|. .+....        .....+.+|||||..          .+.
T Consensus         2 ~~kv~ivG~~gvGKStLl~~l~~~~-~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~----------~~~   70 (184)
T 2zej_A            2 RMKLMIVGNTGSGKTTLLQQLMKTK-KSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGRE----------EFY   70 (184)
T ss_dssp             -CEEEEESCTTSSHHHHHHHHTCC------------CSEEEEEEEC---------CEEEEEEECSHH----------HHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCC-CccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCH----------HHH
Confidence            4689999999999999999999852 12222222221 222111        135678999999942          122


Q ss_pred             HHHHHHHhcccccceEEEEEeCCCCCC--cCcHHHHHHHHh--hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCC
Q 029158           92 ELVKEYVSTRVSLKRVCLLIDTKWGVK--PRDHELISLMER--SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSL  167 (198)
Q Consensus        92 ~~~~~~~~~~~~~d~vi~v~d~~~~~~--~~~~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~  167 (198)
                      .+...++..   ++++++|+|.+++..  ..-..++..+..  .+.|+++|+||+|+..............+.+..  ..
T Consensus        71 ~~~~~~~~~---~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~  145 (184)
T 2zej_A           71 STHPHFMTQ---RALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVILVGTHLDVSDEKQRKACMSKITKELLN--KR  145 (184)
T ss_dssp             TTSHHHHHH---SEEEEEEEEGGGCHHHHHTHHHHHHHHHHHCTTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTT--CT
T ss_pred             HhhHHHccC---CcEEEEEEeCCcchhHHHHHHHHHHHHHhhCCCCcEEEEEECCCcccchhhHHHHHHHHHHHHH--hc
Confidence            223334443   788999999876421  112334444433  268999999999998755433222222222221  12


Q ss_pred             CCC----cEEeccCCCC-ChHHHHHHHHHhhcc
Q 029158          168 VQP----VMMVSSKSGA-GIRSLRTVLSKIARF  195 (198)
Q Consensus       168 ~~~----v~~~Sa~~~~-gi~~l~~~i~~~~~~  195 (198)
                      +.+    ++++||+++. |++++++.|.+.+..
T Consensus       146 ~~~~~~~~~~~Sa~~~~~~~~~l~~~i~~~~~~  178 (184)
T 2zej_A          146 GFPAIRDYHFVNATEESDALAKLRKTIINESLN  178 (184)
T ss_dssp             TSCEEEEEEECCTTSCCHHHHHHHHHHHHHHHC
T ss_pred             CCcchhheEEEecccCchhHHHHHHHHHHHHhc
Confidence            355    8999999996 999999999877654

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=99.87  E-value=2.6e-21  Score=142.48  Aligned_cols=170  Identities=15%  Similarity=0.183  Sum_probs=100.0

Q ss_pred             CCCCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCC--CceeEEE---EEEeCCceEEEeCCCCccccchhHHHHHHH
Q 029158           17 PAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKP--GLTQTIN---FFKLGTKLCLVDLPGYGFAYAKEEVKDAWE   91 (198)
Q Consensus        17 ~~~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~--~~t~~~~---~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~   91 (198)
                      +....++|+++|.+|+|||||+|+|++...  .....+  ++|....   ....+..+.+|||||+.+.....  .+...
T Consensus        25 ~~~~~~~i~lvG~~g~GKStlin~l~g~~~--~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~--~~~~~  100 (239)
T 3lxx_A           25 PRNSQLRIVLVGKTGAGKSATGNSILGRKV--FHSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVPN--AETSK  100 (239)
T ss_dssp             ---CEEEEEEECCTTSSHHHHHHHHHTSCC--SCC-------CCSCEEEEEEETTEEEEEEECCSCC-----C--HHHHH
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHcCCCc--CccCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCCCH--HHHHH
Confidence            445668999999999999999999999742  222222  3444332   22335689999999987643222  11223


Q ss_pred             HHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHh-----hCCcEEEEEeccCCCCcHHHHHHHH----HHHHHHH
Q 029158           92 ELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMER-----SQTKYQVVLTKTDTVFPIDVARRAM----QIEESLK  162 (198)
Q Consensus        92 ~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~-----~~~p~iiv~nK~Dl~~~~~~~~~~~----~~~~~~~  162 (198)
                      .+...+......+|++++|+|++. +...+..++..+..     ...|+++|+||+|+......++...    .+++...
T Consensus       101 ~~~~~~~~~~~~~~~~l~v~d~~~-~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~  179 (239)
T 3lxx_A          101 EIIRCILLTSPGPHALLLVVPLGR-YTEEEHKATEKILKMFGERARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMD  179 (239)
T ss_dssp             HHHHHHHHTTTCCSEEEEEEETTC-CSSHHHHHHHHHHHHHHHHHGGGEEEEEECGGGC------------CHHHHHHHH
T ss_pred             HHHHHHHhcCCCCcEEEEEeeCCC-CCHHHHHHHHHHHHHhhhhccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHH
Confidence            444444444556899999999974 45555555555432     3469999999999987655543222    2333333


Q ss_pred             hccCCCCCcEEeccCCC-----CChHHHHHHHHHhhc
Q 029158          163 ANNSLVQPVMMVSSKSG-----AGIRSLRTVLSKIAR  194 (198)
Q Consensus       163 ~~~~~~~~v~~~Sa~~~-----~gi~~l~~~i~~~~~  194 (198)
                      ..   +.+++.++++.+     .++.+|++.+.+.+.
T Consensus       180 ~~---~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~  213 (239)
T 3lxx_A          180 IF---GDRYCALNNKATGAEQEAQRAQLLGLIQRVVR  213 (239)
T ss_dssp             HH---SSSEEECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             Hc---CCEEEEEECCCCccccHHHHHHHHHHHHHHHH
Confidence            22   346777777644     688999988877653

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=99.87  E-value=1.1e-22  Score=166.54  Aligned_cols=160  Identities=21%  Similarity=0.327  Sum_probs=107.1

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeE--EEEEEe-------------------CCceEEEeCCCCc
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT--INFFKL-------------------GTKLCLVDLPGYG   78 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~--~~~~~~-------------------~~~~~iiDtpG~~   78 (198)
                      +.++|+++|.+++|||||+++|++.. ...... .+.|..  ..+...                   ...+.+|||||+.
T Consensus         4 r~~~V~IvGh~d~GKTTLl~~L~~~~-v~~~e~-ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe   81 (594)
T 1g7s_A            4 RSPIVSVLGHVDHGKTTLLDHIRGSA-VASREA-GGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHE   81 (594)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHHH-HSCC-----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTS
T ss_pred             CCcEEEEECCCCCcHHHHHHHHhccc-CccccC-CceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcH
Confidence            56899999999999999999999762 211111 123322  111110                   1248999999974


Q ss_pred             cccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCc-----------
Q 029158           79 FAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFP-----------  147 (198)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~-----------  147 (198)
                      +-             ..........+|++++|+|+++++.....+.+..+...++|+++++||+|+...           
T Consensus        82 ~F-------------~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~~~vPiIVViNKiDl~~~~~~~~~~~~~e  148 (594)
T 1g7s_A           82 AF-------------TTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYRTPFVVAANKIDRIHGWRVHEGRPFME  148 (594)
T ss_dssp             CC-------------TTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHTTCCEEEEEECGGGSTTCCCCTTCCHHH
T ss_pred             HH-------------HHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCeEEEEecccccccccccccCCchHH
Confidence            31             111123345699999999999998888888888888889999999999999742           


Q ss_pred             ------HHH----HHHHHHHHHHHHhcc------------CCCCCcEEeccCCCCChHHHHHHHHHhhc
Q 029158          148 ------IDV----ARRAMQIEESLKANN------------SLVQPVMMVSSKSGAGIRSLRTVLSKIAR  194 (198)
Q Consensus       148 ------~~~----~~~~~~~~~~~~~~~------------~~~~~v~~~Sa~~~~gi~~l~~~i~~~~~  194 (198)
                            .+.    .+....+.+.+....            ....+++++||++|.|+++|+++|...++
T Consensus       149 ~sa~~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~  217 (594)
T 1g7s_A          149 TFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQ  217 (594)
T ss_dssp             HHTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhcc
Confidence                  111    111122222222211            22458999999999999999999987654

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=99.87  E-value=9.4e-23  Score=144.75  Aligned_cols=152  Identities=13%  Similarity=0.057  Sum_probs=96.7

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE--EEE---eCCceEEEeCCCCccccchhHHHHHHHHH
Q 029158           19 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEEL   93 (198)
Q Consensus        19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~--~~~---~~~~~~iiDtpG~~~~~~~~~~~~~~~~~   93 (198)
                      ....+|+++|.+|+|||||+++|++..   ....+.+|+....  ...   ....+.+|||||.....          . 
T Consensus        19 ~~~~ki~vvG~~~vGKTsLi~~l~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~----------~-   84 (187)
T 3c5c_A           19 PLEVNLAILGRRGAGKSALTVKFLTKR---FISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPR----------N-   84 (187)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHHSS---CCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CC----------C-
T ss_pred             CceEEEEEECCCCCcHHHHHHHHHhCC---CCcccCCCccceeeEEEEECCEEEEEEEEECCCCCcch----------h-
Confidence            345799999999999999999999873   2233444443221  111   23578899999963211          1 


Q ss_pred             HHHHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHh------hCCcEEEEEeccCCCCcHHH--HHHHHHHHHHHHhc
Q 029158           94 VKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER------SQTKYQVVLTKTDTVFPIDV--ARRAMQIEESLKAN  164 (198)
Q Consensus        94 ~~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~------~~~p~iiv~nK~Dl~~~~~~--~~~~~~~~~~~~~~  164 (198)
                      +..++..   +|++++|+|.++...... ..++..+..      .+.|+++|+||+|+......  ++. ..+.+..   
T Consensus        85 ~~~~~~~---~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~-~~~~~~~---  157 (187)
T 3c5c_A           85 CERYLNW---AHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEG-VALAGRF---  157 (187)
T ss_dssp             THHHHTT---CSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHH-HHHHHHH---
T ss_pred             HHHHHhh---CCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHH-HHHHHHc---
Confidence            1233333   899999999985221111 234444433      37999999999999653221  111 1222211   


Q ss_pred             cCCCCCcEEecc-CCCCChHHHHHHHHHhhc
Q 029158          165 NSLVQPVMMVSS-KSGAGIRSLRTVLSKIAR  194 (198)
Q Consensus       165 ~~~~~~v~~~Sa-~~~~gi~~l~~~i~~~~~  194 (198)
                         +.+++++|| ++++|+++++++|.+.+.
T Consensus       158 ---~~~~~e~Sa~~~g~gv~~lf~~l~~~i~  185 (187)
T 3c5c_A          158 ---GCLFFEVSACLDFEHVQHVFHEAVREAR  185 (187)
T ss_dssp             ---TCEEEECCSSSCSHHHHHHHHHHHHHHH
T ss_pred             ---CCcEEEEeecCccccHHHHHHHHHHHHh
Confidence               368999999 899999999999988764

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=99.87  E-value=2.1e-24  Score=174.15  Aligned_cols=159  Identities=19%  Similarity=0.224  Sum_probs=112.7

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEE----eCCceEEEeCCCCccccchhHHHHHHHHHHH
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK----LGTKLCLVDLPGYGFAYAKEEVKDAWEELVK   95 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~----~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~   95 (198)
                      +.|+|+++|.+|+|||||+++|.+.. .. ....+++|.+...+.    .+..+.||||||+..             +..
T Consensus         3 r~pkV~IvG~~~vGKTSLl~~L~~~~-~~-~~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~-------------f~~   67 (537)
T 3izy_P            3 RSPVVTIMGHVDHGKTTLLDKLRKTQ-VA-AMEAGGITQHIGAFLVSLPSGEKITFLDTPGHAA-------------FSA   67 (537)
T ss_dssp             CCCBCEEEESTTTTHHHHHHHHHHHH-HH-HSSSCCBCCCTTSCCBCSSCSSCCBCEECSSSCC-------------TTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC-cc-cccCCceeEEEeEEEEEeCCCCEEEEEECCChHH-------------HHH
Confidence            56889999999999999999999863 22 234455665543222    245799999999732             111


Q ss_pred             HHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHH--HhccCCCCCcEE
Q 029158           96 EYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESL--KANNSLVQPVMM  173 (198)
Q Consensus        96 ~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~  173 (198)
                      ........+|++++|+|+.++....+.+.+..+...++|+++|+||+|+...... .....+.+..  ........++++
T Consensus        68 ~~~~~~~~aD~vILVVDa~dg~~~qt~e~l~~~~~~~vPiIVViNKiDl~~~~~~-~v~~~l~~~~~~~e~~~~~~~iv~  146 (537)
T 3izy_P           68 MRARGTQVTDIVILVVAADDGVMKQTVESIQHAKDAHVPIVLAINKCDKAEADPE-KVKKELLAYDVVCEDYGGDVQAVH  146 (537)
T ss_dssp             SBBSSSBSBSSCEEECBSSSCCCHHHHHHHHHHHTTTCCEEECCBSGGGTTTSCC-SSSSHHHHTTSCCCCSSSSEEECC
T ss_pred             HHHHHHccCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEecccccccchH-HHHHHHHhhhhhHHhcCCCceEEE
Confidence            2233445699999999999988888888888888889999999999999753210 1111111110  011122468999


Q ss_pred             eccCCCCChHHHHHHHHHhhc
Q 029158          174 VSSKSGAGIRSLRTVLSKIAR  194 (198)
Q Consensus       174 ~Sa~~~~gi~~l~~~i~~~~~  194 (198)
                      +||++|+|+++++++|...+.
T Consensus       147 vSAktG~GI~eLle~I~~l~~  167 (537)
T 3izy_P          147 VSALTGENMMALAEATIALAE  167 (537)
T ss_dssp             CCSSSSCSSHHHHHHHHHHHT
T ss_pred             EECCCCCCchhHHHHHHHhhh
Confidence            999999999999999988764

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=99.87  E-value=3.1e-21  Score=149.77  Aligned_cols=169  Identities=21%  Similarity=0.211  Sum_probs=99.1

Q ss_pred             CCCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE---EEEeCCceEEEeCCCCccccchhHHHHHHHHHH
Q 029158           18 APDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELV   94 (198)
Q Consensus        18 ~~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~---~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~   94 (198)
                      .+..+.|+++|++|+|||||+|+|++..  ....+.+++|.+..   +...+..+.++||||+......+ .-+.+.   
T Consensus       176 ~~~~~~V~lvG~~naGKSTLln~L~~~~--~~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp~~-lve~f~---  249 (364)
T 2qtf_A          176 RNNIPSIGIVGYTNSGKTSLFNSLTGLT--QKVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGIPPQ-IVDAFF---  249 (364)
T ss_dssp             ---CCEEEEECBTTSSHHHHHHHHHCC-------------CCSCEEEEEETTEEEEEEECCCBCSSCCGG-GHHHHH---
T ss_pred             hcCCcEEEEECCCCCCHHHHHHHHHCCC--ccccCCcccccCCEEEEEEECCEEEEEEeCCCchhcCCHH-HHHHHH---
Confidence            3456679999999999999999999974  34556666775532   22235678999999974421111 112222   


Q ss_pred             HHHHhcccccceEEEEEeCCCCC--CcCcH-HHHHHHHh---hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCC
Q 029158           95 KEYVSTRVSLKRVCLLIDTKWGV--KPRDH-ELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLV  168 (198)
Q Consensus        95 ~~~~~~~~~~d~vi~v~d~~~~~--~~~~~-~~~~~~~~---~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  168 (198)
                       ..+.....+|++++|+|+++..  ..... .+.+.+..   .+.|+++|.||+|+.+... ......+...........
T Consensus       250 -~tl~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~-~~~~~~~~~l~~~l~~~~  327 (364)
T 2qtf_A          250 -VTLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDL-YKKLDLVEKLSKELYSPI  327 (364)
T ss_dssp             -HHHHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCH-HHHHHHHHHHHHHHCSCE
T ss_pred             -HHHHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchH-HHHHHHHHHHHHHhcCCC
Confidence             2233445689999999997642  11111 12233333   3689999999999986541 111122211111110113


Q ss_pred             CCcEEeccCCCCChHHHHHHHHHhhc
Q 029158          169 QPVMMVSSKSGAGIRSLRTVLSKIAR  194 (198)
Q Consensus       169 ~~v~~~Sa~~~~gi~~l~~~i~~~~~  194 (198)
                      .+++++||++++|+++++++|.+.+.
T Consensus       328 ~~~~~~SA~~g~gi~~L~~~I~~~l~  353 (364)
T 2qtf_A          328 FDVIPISALKRTNLELLRDKIYQLAT  353 (364)
T ss_dssp             EEEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCcCHHHHHHHHHHHhc
Confidence            46899999999999999999988664

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=99.78  E-value=9.2e-24  Score=151.88  Aligned_cols=156  Identities=13%  Similarity=0.002  Sum_probs=99.2

Q ss_pred             CCCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEE-----EEEEeCCceEEEeCCCCccccchhHHHHHHHH
Q 029158           18 APDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI-----NFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEE   92 (198)
Q Consensus        18 ~~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~-----~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~   92 (198)
                      .....+|+++|.+|+|||||+++|++..   ....+.+++.+.     .+......+.+|||||...          +..
T Consensus        27 ~~~~~ki~v~G~~~~GKSsli~~l~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~----------~~~   93 (204)
T 3th5_A           27 QGQAIKCVVVGDGAVGKTCLLISYTTNA---FPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED----------YDR   93 (204)
Confidence            3456899999999999999999999763   122233333221     1222245677999999632          122


Q ss_pred             HHHHHHhcccccceEEEEEeCCCCCCcCcH--HHHHHHHhh--CCcEEEEEeccCCCCcHHHHHH----------HHHHH
Q 029158           93 LVKEYVSTRVSLKRVCLLIDTKWGVKPRDH--ELISLMERS--QTKYQVVLTKTDTVFPIDVARR----------AMQIE  158 (198)
Q Consensus        93 ~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~--~~~~~~~~~--~~p~iiv~nK~Dl~~~~~~~~~----------~~~~~  158 (198)
                      ....++.   .+|++++|+|+++.......  .++..+...  +.|+++|+||+|+.......+.          .+...
T Consensus        94 ~~~~~~~---~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~  170 (204)
T 3th5_A           94 LRPLSYP---QTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGL  170 (204)
Confidence            2333333   38999999998774333332  455555544  7899999999999764321111          01111


Q ss_pred             HHHHhccCCCC-CcEEeccCCCCChHHHHHHHHHh
Q 029158          159 ESLKANNSLVQ-PVMMVSSKSGAGIRSLRTVLSKI  192 (198)
Q Consensus       159 ~~~~~~~~~~~-~v~~~Sa~~~~gi~~l~~~i~~~  192 (198)
                      +..   ...+. +++++||++|+|+++++++|.+.
T Consensus       171 ~~~---~~~~~~~~~~vSA~~g~gi~~l~~~l~~~  202 (204)
T 3th5_A          171 AMA---KEIGAVKYLECSALTQRGLKTVFDEAIRA  202 (204)
Confidence            111   11123 89999999999999999998765

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=99.87  E-value=1.4e-21  Score=159.83  Aligned_cols=159  Identities=18%  Similarity=0.187  Sum_probs=102.1

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCcc-ce------ee------cCCCCceeE---EEEEEe-----CCceEEEeCCCCc
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQWG-VV------RT------SDKPGLTQT---INFFKL-----GTKLCLVDLPGYG   78 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~~~-~~------~~------~~~~~~t~~---~~~~~~-----~~~~~iiDtpG~~   78 (198)
                      ..++|+++|++++|||||+++|+.... +.      ..      ....+.|..   ..+...     ...+.+|||||+.
T Consensus         3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~   82 (599)
T 3cb4_D            3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV   82 (599)
T ss_dssp             TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence            457899999999999999999986310 00      00      111233332   122111     2578999999984


Q ss_pred             cccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHH
Q 029158           79 FAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIE  158 (198)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~  158 (198)
                      +-          ......++   ..+|++++|+|++++....+...+..+...++|+++|+||+|+.... .++..+.+.
T Consensus        83 dF----------~~ev~~~l---~~aD~aILVVDa~~gv~~qt~~~~~~~~~~~ipiIvViNKiDl~~a~-~~~v~~ei~  148 (599)
T 3cb4_D           83 DF----------SYEVSRSL---AACEGALLVVDAGQGVEAQTLANCYTAMEMDLEVVPVLNKIDLPAAD-PERVAEEIE  148 (599)
T ss_dssp             GG----------HHHHHHHH---HHCSEEEEEEETTTCCCTHHHHHHHHHHHTTCEEEEEEECTTSTTCC-HHHHHHHHH
T ss_pred             HH----------HHHHHHHH---HHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEeeeccCccccc-HHHHHHHHH
Confidence            31          11222222   33899999999999888777777777777789999999999998653 233334444


Q ss_pred             HHHHhccCCCCCcEEeccCCCCChHHHHHHHHHhhcc
Q 029158          159 ESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIARF  195 (198)
Q Consensus       159 ~~~~~~~~~~~~v~~~Sa~~~~gi~~l~~~i~~~~~~  195 (198)
                      +.+   .....+++++||++|.|+++++++|.+.++.
T Consensus       149 ~~l---g~~~~~vi~vSAktg~GI~~Ll~~I~~~lp~  182 (599)
T 3cb4_D          149 DIV---GIDATDAVRCSAKTGVGVQDVLERLVRDIPP  182 (599)
T ss_dssp             HHT---CCCCTTCEEECTTTCTTHHHHHHHHHHHSCC
T ss_pred             HHh---CCCcceEEEeecccCCCchhHHHHHhhcCCC
Confidence            432   1222469999999999999999999987753

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=99.87  E-value=1.4e-21  Score=162.99  Aligned_cols=164  Identities=16%  Similarity=0.222  Sum_probs=108.5

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEE----------EEEE-------------------e-----
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI----------NFFK-------------------L-----   65 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~----------~~~~-------------------~-----   65 (198)
                      ..++|+++|.+|+|||||+|+|++. .+...+..+.|....          +...                   .     
T Consensus        68 ~~~~V~VvG~~naGKSSLlNaLlg~-~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~  146 (695)
T 2j69_A           68 GVFRLLVLGDMKRGKSTFLNALIGE-NLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEA  146 (695)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHTS-SCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC-CCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHH
Confidence            4578999999999999999999987 445555555441100          0000                   0     


Q ss_pred             --------------------------CCceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCc
Q 029158           66 --------------------------GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKP  119 (198)
Q Consensus        66 --------------------------~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~  119 (198)
                                                +.++.+|||||+.+...       .......++.   .+|++++|+|++.+...
T Consensus       147 ~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~-------~~~~~~~~i~---~aD~vL~Vvda~~~~s~  216 (695)
T 2j69_A          147 KKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEA-------RNELSLGYVN---NCHAILFVMRASQPCTL  216 (695)
T ss_dssp             HHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHT-------CHHHHTHHHH---SSSEEEEEEETTSTTCH
T ss_pred             HHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhh-------HHHHHHHHHH---hCCEEEEEEeCCCccch
Confidence                                      04799999999754211       1222333443   48999999999987766


Q ss_pred             CcHHHHH-HHHhhCCcEEEEEeccCCCCcH--------HHHHHHHHHH----HHHHhccC------CCCCcEEeccC---
Q 029158          120 RDHELIS-LMERSQTKYQVVLTKTDTVFPI--------DVARRAMQIE----ESLKANNS------LVQPVMMVSSK---  177 (198)
Q Consensus       120 ~~~~~~~-~~~~~~~p~iiv~nK~Dl~~~~--------~~~~~~~~~~----~~~~~~~~------~~~~v~~~Sa~---  177 (198)
                      .+...+. .+...+.|+++|+||+|+....        ..+.....+.    ..+.....      ...+++++||+   
T Consensus       217 ~e~~~l~~~l~~~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al  296 (695)
T 2j69_A          217 GERRYLENYIKGRGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQAL  296 (695)
T ss_dssp             HHHHHHHHHTTTSCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHH
T ss_pred             hHHHHHHHHHHhhCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHH
Confidence            6665553 4555578999999999997543        2222222232    22322211      23579999999   


Q ss_pred             -----------CCCChHHHHHHHHHhhc
Q 029158          178 -----------SGAGIRSLRTVLSKIAR  194 (198)
Q Consensus       178 -----------~~~gi~~l~~~i~~~~~  194 (198)
                                 ++.|+++++++|.+.+.
T Consensus       297 ~~~~~~~~~~~~~~Gi~~L~~~L~~~l~  324 (695)
T 2j69_A          297 RRRLKNPQADLDGTGFPKFMDSLNTFLT  324 (695)
T ss_dssp             HHHHHCTTCCCTTSSHHHHHHHHHHHHH
T ss_pred             HhhccCchhhhhccCHHHHHHHHHHHHH
Confidence                       99999999999988664

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=99.87  E-value=1.8e-22  Score=156.66  Aligned_cols=171  Identities=19%  Similarity=0.179  Sum_probs=110.5

Q ss_pred             CCCCCeEEEEcCCCCCHHHHHHHHhcCccce----eecCCCC----------------------ceeE------------
Q 029158           18 APDLPEIAFAGRSNVGKSSMLNALTRQWGVV----RTSDKPG----------------------LTQT------------   59 (198)
Q Consensus        18 ~~~~~~v~~vG~~~~GKSsli~~l~~~~~~~----~~~~~~~----------------------~t~~------------   59 (198)
                      ....++|+++|.+|+|||||+|+|++.....    .....+.                      +|.+            
T Consensus        28 ~~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~  107 (353)
T 2x2e_A           28 DLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDR  107 (353)
T ss_dssp             GCCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHH
T ss_pred             CCCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHH
Confidence            3457899999999999999999999874211    1111222                      1111            


Q ss_pred             --------------EEEEE-eCCceEEEeCCCCccccc---hhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCc
Q 029158           60 --------------INFFK-LGTKLCLVDLPGYGFAYA---KEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD  121 (198)
Q Consensus        60 --------------~~~~~-~~~~~~iiDtpG~~~~~~---~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~  121 (198)
                                    ..+.. ...++.+|||||+.....   .....+.+..+...|+..  ..+++++++|++.++...+
T Consensus       108 i~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~iiL~v~~a~~~~~~~~  185 (353)
T 2x2e_A          108 VTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTK--ENCLILAVSPANSDLANSD  185 (353)
T ss_dssp             HHTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTS--TTEEEEEEEETTSCGGGCH
T ss_pred             hcccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcC--CCeEEEEEecCCCccchhH
Confidence                          11111 146899999999865321   233344566777777764  3567888889887666665


Q ss_pred             H-HHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEeccCCCCChHHHHHHHHHh
Q 029158          122 H-ELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKI  192 (198)
Q Consensus       122 ~-~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~~~gi~~l~~~i~~~  192 (198)
                      . .+++.+...+.|+++|+||+|+......  ....++...........+++++||+++.|++++++++.+.
T Consensus       186 ~~~i~~~~~~~~~~~i~V~NK~Dl~~~~~~--~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~e  255 (353)
T 2x2e_A          186 ALKVAKEVDPQGQRTIGVITKLDLMDEGTD--ARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE  255 (353)
T ss_dssp             HHHHHHHHCTTCTTEEEEEECGGGSCTTCC--CHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHHH
T ss_pred             HHHHHHHhCcCCCceEEEeccccccCcchh--HHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHHH
Confidence            4 3667777678999999999999865321  0111111111111112468999999999999999998764

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=99.86  E-value=3.1e-22  Score=141.58  Aligned_cols=157  Identities=15%  Similarity=0.085  Sum_probs=96.5

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEE---EEEE--eCCceEEEeCCCCccccchhHHHHHHHHH
Q 029158           19 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---NFFK--LGTKLCLVDLPGYGFAYAKEEVKDAWEEL   93 (198)
Q Consensus        19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~---~~~~--~~~~~~iiDtpG~~~~~~~~~~~~~~~~~   93 (198)
                      ....+|+++|.+|+|||||+++|++...   ...+.++....   .+..  ....+.+|||||...-          ..+
T Consensus         5 ~~~~ki~v~G~~~vGKSsli~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----------~~~   71 (184)
T 1m7b_A            5 NVKCKIVVVGDSQCGKTALLHVFAKDCF---PENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYY----------DNV   71 (184)
T ss_dssp             -CEEEEEEEESTTSSHHHHHHHHHHSCC---CSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGG----------TTT
T ss_pred             ceEEEEEEECCCCCCHHHHHHHHhcCCC---CCCCCCccceeEEEEEEECCEEEEEEEEECCCChhh----------hhh
Confidence            3567899999999999999999998732   22232222211   1111  1346899999996321          111


Q ss_pred             HHHHHhcccccceEEEEEeCCCCCCcCc--HHHHHHHHhh--CCcEEEEEeccCCCCcHHHH-HH---------HHHHHH
Q 029158           94 VKEYVSTRVSLKRVCLLIDTKWGVKPRD--HELISLMERS--QTKYQVVLTKTDTVFPIDVA-RR---------AMQIEE  159 (198)
Q Consensus        94 ~~~~~~~~~~~d~vi~v~d~~~~~~~~~--~~~~~~~~~~--~~p~iiv~nK~Dl~~~~~~~-~~---------~~~~~~  159 (198)
                      ...   ....+|++++|+|+++......  ..++..+...  +.|+++|+||+|+....... +.         .+..++
T Consensus        72 ~~~---~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~  148 (184)
T 1m7b_A           72 RPL---SYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGAN  148 (184)
T ss_dssp             GGG---GCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHH
T ss_pred             HHh---hcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHH
Confidence            111   2345899999999986322222  2344445442  68999999999997532110 00         111222


Q ss_pred             HHHhccCCCCCcEEeccC-CCCChHHHHHHHHHhh
Q 029158          160 SLKANNSLVQPVMMVSSK-SGAGIRSLRTVLSKIA  193 (198)
Q Consensus       160 ~~~~~~~~~~~v~~~Sa~-~~~gi~~l~~~i~~~~  193 (198)
                      ......  ..+++++||+ ++.|++++++++.+.+
T Consensus       149 ~~~~~~--~~~~~e~Sa~~~~~gi~~l~~~i~~~~  181 (184)
T 1m7b_A          149 MAKQIG--AATYIECSALQSENSVRDIFHVATLAC  181 (184)
T ss_dssp             HHHHHT--CSEEEECBTTTBHHHHHHHHHHHHHHH
T ss_pred             HHHHcC--CcEEEEeeecCCCcCHHHHHHHHHHHH
Confidence            211111  3689999999 6899999999998765

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=99.86  E-value=6.7e-22  Score=142.88  Aligned_cols=156  Identities=15%  Similarity=0.067  Sum_probs=93.8

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeE---EEEEE--eCCceEEEeCCCCccccchhHHHHHHHHHH
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT---INFFK--LGTKLCLVDLPGYGFAYAKEEVKDAWEELV   94 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~---~~~~~--~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~   94 (198)
                      ...+|+++|.+|+|||||++++++.. ......++.++.+   ..+..  ....+.+|||+|....         ...+.
T Consensus        36 ~~~kVvlvG~~~vGKSSLl~r~~~~~-~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~---------~~~l~  105 (211)
T 2g3y_A           36 TYYRVVLIGEQGVGKSTLANIFAGVH-DSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGE---------NEWLH  105 (211)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHCCC-CTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHH---------HHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCC-CCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcch---------hhhHH
Confidence            45789999999999999999999752 1222222222222   11211  1245789999995210         01111


Q ss_pred             HHHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHh----hCCcEEEEEeccCCCCcHHHHH-HHHHHHHHHHhccCCC
Q 029158           95 KEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPIDVAR-RAMQIEESLKANNSLV  168 (198)
Q Consensus        95 ~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~----~~~p~iiv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~  168 (198)
                      ..+   ...+|++++|+|.+....-.. ..++..+..    .++|+++|+||+|+........ ....+...      .+
T Consensus       106 ~~~---~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~------~~  176 (211)
T 2g3y_A          106 DHC---MQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVV------FD  176 (211)
T ss_dssp             HCC---CCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHH------HT
T ss_pred             HHH---HhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHHHH------cC
Confidence            112   234789999999875211111 223343432    2689999999999975322111 11111111      13


Q ss_pred             CCcEEeccCCCCChHHHHHHHHHhhc
Q 029158          169 QPVMMVSSKSGAGIRSLRTVLSKIAR  194 (198)
Q Consensus       169 ~~v~~~Sa~~~~gi~~l~~~i~~~~~  194 (198)
                      ++++++||++|+|+++++++|.+.+.
T Consensus       177 ~~~~e~SAk~g~~v~elf~~l~~~i~  202 (211)
T 2g3y_A          177 CKFIETSAAVQHNVKELFEGIVRQVR  202 (211)
T ss_dssp             CEEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred             CEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            68999999999999999999988764

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=99.86  E-value=9.6e-22  Score=161.71  Aligned_cols=153  Identities=17%  Similarity=0.175  Sum_probs=106.9

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCccceeecC------------------------------CCCceeEEE---EEEe
Q 029158           19 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSD------------------------------KPGLTQTIN---FFKL   65 (198)
Q Consensus        19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~------------------------------~~~~t~~~~---~~~~   65 (198)
                      ....+|+++|.+|+|||||+++|++.. ......                              .+++|.+..   +...
T Consensus       165 k~~lkV~ivG~~n~GKSTLin~Ll~~~-~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~  243 (611)
T 3izq_1          165 LPHLSFVVLGHVDAGKSTLMGRLLYDL-NIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH  243 (611)
T ss_dssp             CCCCEEEEECCSSSCHHHHHHHHHSCS-SCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECS
T ss_pred             CCceEEEEEECCCCCHHHHHHHHHHhc-CCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecC
Confidence            346799999999999999999999762 111110                              134554432   3344


Q ss_pred             CCceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCC-------CCcCcHHHHHHHHhhCCc-EEE
Q 029158           66 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG-------VKPRDHELISLMERSQTK-YQV  137 (198)
Q Consensus        66 ~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~-------~~~~~~~~~~~~~~~~~p-~ii  137 (198)
                      +..+.||||||+             ..+...+......+|++++|+|++.+       ......+.+..+...+.| +|+
T Consensus       244 ~~~~~iiDTPG~-------------e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIV  310 (611)
T 3izq_1          244 RANFTIVDAPGH-------------RDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLII  310 (611)
T ss_dssp             SCEEEEEECCSS-------------SCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEE
T ss_pred             CceEEEEECCCC-------------cccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEE
Confidence            678999999998             33456667777789999999999874       234556666666666654 999


Q ss_pred             EEeccCCCCc--HHHHHHHHHHHHHHHhccC--CCCCcEEeccCCCCChHHH
Q 029158          138 VLTKTDTVFP--IDVARRAMQIEESLKANNS--LVQPVMMVSSKSGAGIRSL  185 (198)
Q Consensus       138 v~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~--~~~~v~~~Sa~~~~gi~~l  185 (198)
                      |+||+|+...  ...++....+.+.+.....  ...+++++||++|.|++++
T Consensus       311 VvNKiDl~~~~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el  362 (611)
T 3izq_1          311 AMNKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI  362 (611)
T ss_dssp             EEECTTTTTTCHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred             EEecccccchhHHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence            9999999873  3344445555554443321  1468999999999999865

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=99.86  E-value=1.9e-23  Score=171.39  Aligned_cols=162  Identities=17%  Similarity=0.170  Sum_probs=97.0

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCccc-----------------------------eeecCCCCceeEEEEEE---eCC
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQWGV-----------------------------VRTSDKPGLTQTINFFK---LGT   67 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~-----------------------------~~~~~~~~~t~~~~~~~---~~~   67 (198)
                      ..++|+++|.+++|||||+++|++....                             ......+++|.+.....   .+.
T Consensus       176 ~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~~~  255 (592)
T 3mca_A          176 PVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESDKK  255 (592)
T ss_dssp             CEEEEEEECCSSSTHHHHHHHHHHHHHCC---------------------------------------------------
T ss_pred             CccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeCCe
Confidence            4568999999999999999999743100                             00011334555543222   357


Q ss_pred             ceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCC-------CcCcHHHHHHHHhhCCc-EEEEE
Q 029158           68 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGV-------KPRDHELISLMERSQTK-YQVVL  139 (198)
Q Consensus        68 ~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~-------~~~~~~~~~~~~~~~~p-~iiv~  139 (198)
                      .+.||||||+.+-             ...+......+|++++|+|++.+.       .....+.+..+...++| +|+|+
T Consensus       256 ~i~iiDTPGh~~f-------------~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~lgip~iIvvi  322 (592)
T 3mca_A          256 IYEIGDAPGHRDF-------------ISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISEIVVSV  322 (592)
T ss_dssp             ---CCEEESSSEE-------------EEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHSSCCCEEEEE
T ss_pred             EEEEEECCChHHH-------------HHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEE
Confidence            8999999997432             112233334589999999998753       66777788888777887 99999


Q ss_pred             eccCCCC--cHHHHHHHHHHHHHH-Hhcc--CCCCCcEEeccCCCCChH--------------HHHHHHHHhhc
Q 029158          140 TKTDTVF--PIDVARRAMQIEESL-KANN--SLVQPVMMVSSKSGAGIR--------------SLRTVLSKIAR  194 (198)
Q Consensus       140 nK~Dl~~--~~~~~~~~~~~~~~~-~~~~--~~~~~v~~~Sa~~~~gi~--------------~l~~~i~~~~~  194 (198)
                      ||+|+..  ....+.....+.+.+ ....  ....+++++||++|.|+.              .|++.|.....
T Consensus       323 NKiDl~~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~~p  396 (592)
T 3mca_A          323 NKLDLMSWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQLVP  396 (592)
T ss_dssp             ECGGGGTTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTSCC
T ss_pred             eccccccccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccccccccccccccchHHHHHHHHhhcc
Confidence            9999986  344455556666655 2221  123579999999999998              78888877654

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=99.86  E-value=5.9e-22  Score=151.48  Aligned_cols=173  Identities=18%  Similarity=0.181  Sum_probs=102.4

Q ss_pred             CCCCCeEEEEcCCCCCHHHHHHHHhcCccc----eeecCCC---CceeE-------------------------------
Q 029158           18 APDLPEIAFAGRSNVGKSSMLNALTRQWGV----VRTSDKP---GLTQT-------------------------------   59 (198)
Q Consensus        18 ~~~~~~v~~vG~~~~GKSsli~~l~~~~~~----~~~~~~~---~~t~~-------------------------------   59 (198)
                      ....|+|+++|.+|+|||||+|+|++....    ......+   .++..                               
T Consensus        21 ~~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (315)
T 1jwy_B           21 PLDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIRE  100 (315)
T ss_dssp             TTCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHH
T ss_pred             CCCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHH
Confidence            446789999999999999999999987321    1111222   11110                               


Q ss_pred             ----------------------EE-EEEeCCceEEEeCCCCccccc---hhHHHHHHHHHHHHHHhcccccceEEEEEeC
Q 029158           60 ----------------------IN-FFKLGTKLCLVDLPGYGFAYA---KEEVKDAWEELVKEYVSTRVSLKRVCLLIDT  113 (198)
Q Consensus        60 ----------------------~~-~~~~~~~~~iiDtpG~~~~~~---~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~  113 (198)
                                            .. ....+.++.+|||||+.....   .......+......++..   +|++++|+|+
T Consensus       101 ~i~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~---~d~iilvvd~  177 (315)
T 1jwy_B          101 EIIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKK---QNAIIVAVTP  177 (315)
T ss_dssp             HHHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHS---TTEEEEEEEE
T ss_pred             HHHHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcC---CCeEEEEEEe
Confidence                                  00 111246899999999864210   011223334444445444   8999999997


Q ss_pred             -CCCCCcCc-HHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEeccCC---CCChHHHHHH
Q 029158          114 -KWGVKPRD-HELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKS---GAGIRSLRTV  188 (198)
Q Consensus       114 -~~~~~~~~-~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~---~~gi~~l~~~  188 (198)
                       +.++...+ ..+++.+...+.|+++|+||+|+......  ....++..+........+++.+|+.+   +.|++++++.
T Consensus       178 ~~~~~~~~~~~~i~~~~~~~~~~~i~v~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~  255 (315)
T 1jwy_B          178 ANTDLANSDALQLAKEVDPEGKRTIGVITKLDLMDKGTD--AMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKS  255 (315)
T ss_dssp             SSSCSTTCSHHHHHHHHCSSCSSEEEEEECTTSSCSSCC--CHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHH
T ss_pred             cCcchhhhHHHHHHHHhCCCCCcEEEEEcCcccCCcchH--HHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHH
Confidence             55555455 36777777778999999999999865431  11222211111001123445555555   7999999999


Q ss_pred             HHHhhcc
Q 029158          189 LSKIARF  195 (198)
Q Consensus       189 i~~~~~~  195 (198)
                      +.+.++.
T Consensus       256 ~~~~~~~  262 (315)
T 1jwy_B          256 EILYFKN  262 (315)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHhC
Confidence            8877653

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=99.86  E-value=1.4e-21  Score=155.50  Aligned_cols=152  Identities=19%  Similarity=0.239  Sum_probs=102.7

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCc-cce----------------------------eecCCCCceeEEE---EEEeCC
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQW-GVV----------------------------RTSDKPGLTQTIN---FFKLGT   67 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~~-~~~----------------------------~~~~~~~~t~~~~---~~~~~~   67 (198)
                      ...+|+++|.+++|||||+++|++.. .+.                            ......++|.+..   +...+.
T Consensus         5 ~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~~   84 (435)
T 1jny_A            5 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKY   84 (435)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSC
T ss_pred             CEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCCe
Confidence            45789999999999999999998641 000                            0011344555543   333467


Q ss_pred             ceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCC-------CCcCcHHHHHHHHhhCC-cEEEEE
Q 029158           68 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG-------VKPRDHELISLMERSQT-KYQVVL  139 (198)
Q Consensus        68 ~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~-------~~~~~~~~~~~~~~~~~-p~iiv~  139 (198)
                      .+.+|||||+.             .+...+......+|++++|+|+.++       +.....+.+..+...+. |+++|+
T Consensus        85 ~~~iiDtpG~~-------------~f~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~~~~~~iivvi  151 (435)
T 1jny_A           85 FFTIIDAPGHR-------------DFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAV  151 (435)
T ss_dssp             EEEECCCSSST-------------THHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEE
T ss_pred             EEEEEECCCcH-------------HHHHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEE
Confidence            89999999973             2344556666779999999999986       55566667776666675 589999


Q ss_pred             eccCCCCc----HHHHHHHHHHHHHHHhccC--CCCCcEEeccCCCCChHH
Q 029158          140 TKTDTVFP----IDVARRAMQIEESLKANNS--LVQPVMMVSSKSGAGIRS  184 (198)
Q Consensus       140 nK~Dl~~~----~~~~~~~~~~~~~~~~~~~--~~~~v~~~Sa~~~~gi~~  184 (198)
                      ||+|+...    ...+...+++++.+.....  ...+++++||++|+|+.+
T Consensus       152 NK~Dl~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e  202 (435)
T 1jny_A          152 NKMDLTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITH  202 (435)
T ss_dssp             ECGGGSSSTTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTB
T ss_pred             EcccCCCccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCccccc
Confidence            99999873    3334555666666554331  137899999999999974

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=99.86  E-value=1.7e-21  Score=157.61  Aligned_cols=117  Identities=21%  Similarity=0.277  Sum_probs=83.5

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCcc-c-------------eeecC------CCCce---eEEEEEEeCCceEEEeCC
Q 029158           19 PDLPEIAFAGRSNVGKSSMLNALTRQWG-V-------------VRTSD------KPGLT---QTINFFKLGTKLCLVDLP   75 (198)
Q Consensus        19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~-~-------------~~~~~------~~~~t---~~~~~~~~~~~~~iiDtp   75 (198)
                      ...++|+++|.+|+|||||+++|+.... +             ....+      ..++|   ....+...+..+.+||||
T Consensus        11 ~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTP   90 (528)
T 3tr5_A           11 AMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTP   90 (528)
T ss_dssp             HTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCC
T ss_pred             hcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECC
Confidence            3567999999999999999999972110 0             00000      11222   223344457789999999


Q ss_pred             CCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcH
Q 029158           76 GYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPI  148 (198)
Q Consensus        76 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~  148 (198)
                      |+.+-             ..........+|++++|+|++.+....+..++..+...++|+++|+||+|+....
T Consensus        91 G~~df-------------~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~~~iPiivviNK~Dl~~~~  150 (528)
T 3tr5_A           91 GHADF-------------TEDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRLRHTPIMTFINKMDRDTRP  150 (528)
T ss_dssp             CSTTC-------------CHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHTTTCCEEEEEECTTSCCSC
T ss_pred             CchhH-------------HHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCcccc
Confidence            98432             1233444456999999999999888888888888888899999999999997543

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=99.86  E-value=2.7e-23  Score=166.49  Aligned_cols=158  Identities=22%  Similarity=0.277  Sum_probs=109.7

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEE---eCCceEEEeCCCCccccchhHHHHHHHHHHH
Q 029158           19 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVK   95 (198)
Q Consensus        19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~   95 (198)
                      ++.++|+++|++++|||||+++|.+.. +. ....+++|.+...+.   .+..+.||||||+..-             ..
T Consensus         2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~-v~-~~e~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~f-------------~~   66 (501)
T 1zo1_I            2 PRAPVVTIMGHVDHGKTSLLEYIRSTK-VA-SGEAGGITQHIGAYHVETENGMITFLDTPGHAAF-------------TS   66 (501)
T ss_dssp             CCCCCEEEEESTTSSSHHHHHHHHHHH-HS-BTTBCCCCCCSSCCCCCTTSSCCCEECCCTTTCC-------------TT
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHcCC-Cc-cccCCCeeEeEEEEEEEECCEEEEEEECCCcHHH-------------HH
Confidence            467889999999999999999998752 22 222344554433222   3567999999997331             11


Q ss_pred             HHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHH--HHHhccCCCCCcEE
Q 029158           96 EYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEE--SLKANNSLVQPVMM  173 (198)
Q Consensus        96 ~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~--~~~~~~~~~~~v~~  173 (198)
                      .+......+|++++|+|+.++......+.+..+...++|+++++||+|+..... +.....+.+  .+........++++
T Consensus        67 ~~~~~~~~aD~aILVVda~~g~~~qT~e~l~~~~~~~vPiIVviNKiDl~~~~~-~~v~~~l~~~~~~~~~~~~~~~~v~  145 (501)
T 1zo1_I           67 MRARGAQATDIVVLVVAADDGVMPQTIEAIQHAKAAQVPVVVAVNKIDKPEADP-DRVKNELSQYGILPEEWGGESQFVH  145 (501)
T ss_dssp             SBCSSSBSCSSEEEEEETTTBSCTTTHHHHHHHHHTTCCEEEEEECSSSSTTCC-CCTTCCCCCCCCCTTCCSSSCEEEE
T ss_pred             HHHHHHhhCCEEEEEeecccCccHHHHHHHHHHHhcCceEEEEEEeccccccCH-HHHHHHHHHhhhhHHHhCCCccEEE
Confidence            233445669999999999998888888888888888999999999999975321 000000000  00011122368999


Q ss_pred             eccCCCCChHHHHHHHHHh
Q 029158          174 VSSKSGAGIRSLRTVLSKI  192 (198)
Q Consensus       174 ~Sa~~~~gi~~l~~~i~~~  192 (198)
                      +||++|+|+++++++|...
T Consensus       146 vSAktG~gI~eLle~I~~~  164 (501)
T 1zo1_I          146 VSAKAGTGIDELLDAILLQ  164 (501)
T ss_dssp             CCTTTCTTCTTHHHHTTTT
T ss_pred             EeeeeccCcchhhhhhhhh
Confidence            9999999999999998754

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=99.86  E-value=1.4e-20  Score=161.25  Aligned_cols=163  Identities=20%  Similarity=0.235  Sum_probs=115.4

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCcc-------ce-------eecCCCCceeEE---EEEEeCCceEEEeCCCCcccc
Q 029158           19 PDLPEIAFAGRSNVGKSSMLNALTRQWG-------VV-------RTSDKPGLTQTI---NFFKLGTKLCLVDLPGYGFAY   81 (198)
Q Consensus        19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~-------~~-------~~~~~~~~t~~~---~~~~~~~~~~iiDtpG~~~~~   81 (198)
                      ....+|+++|.+++|||||+++|++...       ..       ......++|.+.   .+...+..+.+|||||+    
T Consensus       294 k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGH----  369 (1289)
T 3avx_A          294 KPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGH----  369 (1289)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCH----
T ss_pred             CCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCCh----
Confidence            3457899999999999999999987410       00       011123344332   23334678999999996    


Q ss_pred             chhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCc-EEEEEeccCCCCcHH-HHHHHHHHHH
Q 029158           82 AKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKTDTVFPID-VARRAMQIEE  159 (198)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~~~-~~~~~~~~~~  159 (198)
                               ..+...+......+|++++|+|+.++...+..+++..+...++| +|+|+||+|+....+ .+...+++++
T Consensus       370 ---------edF~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~lgIP~IIVVINKiDLv~d~e~le~i~eEi~e  440 (1289)
T 3avx_A          370 ---------ADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRE  440 (1289)
T ss_dssp             ---------HHHHHHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHHHTCSCEEEEEECCTTCCCHHHHHHHHHHHHH
T ss_pred             ---------HHHHHHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHHcCCCeEEEEEeecccccchhhHHHHHHHHHH
Confidence                     44556677777889999999999998888888888888777899 789999999986433 2334455555


Q ss_pred             HHHhcc--CCCCCcEEeccCCC--------CChHHHHHHHHHhhc
Q 029158          160 SLKANN--SLVQPVMMVSSKSG--------AGIRSLRTVLSKIAR  194 (198)
Q Consensus       160 ~~~~~~--~~~~~v~~~Sa~~~--------~gi~~l~~~i~~~~~  194 (198)
                      .+....  ....+++++||++|        .|+++|+++|.+.++
T Consensus       441 lLk~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip  485 (1289)
T 3avx_A          441 LLSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIP  485 (1289)
T ss_dssp             HHHHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSC
T ss_pred             HHHhccccccceeEEEEEeccCCCCCccccccchhhHhHHhhhcC
Confidence            554432  12479999999999        578999999987654

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=99.85  E-value=1.3e-21  Score=159.76  Aligned_cols=160  Identities=22%  Similarity=0.232  Sum_probs=103.9

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCcc-cee------e------cCCCCceeE---EEEEEe-----CCceEEEeCCCC
Q 029158           19 PDLPEIAFAGRSNVGKSSMLNALTRQWG-VVR------T------SDKPGLTQT---INFFKL-----GTKLCLVDLPGY   77 (198)
Q Consensus        19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~-~~~------~------~~~~~~t~~---~~~~~~-----~~~~~iiDtpG~   77 (198)
                      ...++|+++|.+++|||||+++|+.... +..      .      ....+.|..   ..+...     ...+.+|||||+
T Consensus         4 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh   83 (600)
T 2ywe_A            4 KNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGH   83 (600)
T ss_dssp             GGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCS
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCc
Confidence            4567899999999999999999986310 000      0      011222322   122111     257889999998


Q ss_pred             ccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHH
Q 029158           78 GFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQI  157 (198)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~  157 (198)
                      .+-          ..   +.......+|++++|+|++++....+...+..+...+.|+++|+||+|+.... .++..+.+
T Consensus        84 ~dF----------~~---ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~~~ipiIvviNKiDl~~a~-~~~v~~el  149 (600)
T 2ywe_A           84 VDF----------SY---EVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQDLVIIPVINKIDLPSAD-VDRVKKQI  149 (600)
T ss_dssp             GGG----------HH---HHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHHTTCEEEEEEECTTSTTCC-HHHHHHHH
T ss_pred             HhH----------HH---HHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHCCCCEEEEEeccCccccC-HHHHHHHH
Confidence            431          11   22222344899999999999887777777777777799999999999998653 22333333


Q ss_pred             HHHHHhccCCCCCcEEeccCCCCChHHHHHHHHHhhcc
Q 029158          158 EESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIARF  195 (198)
Q Consensus       158 ~~~~~~~~~~~~~v~~~Sa~~~~gi~~l~~~i~~~~~~  195 (198)
                      .+.+   .....+++++||++|.|+++++++|.+.++.
T Consensus       150 ~~~l---g~~~~~vi~vSAktg~GI~~Lle~I~~~lp~  184 (600)
T 2ywe_A          150 EEVL---GLDPEEAILASAKEGIGIEEILEAIVNRIPP  184 (600)
T ss_dssp             HHTS---CCCGGGCEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred             HHhh---CCCcccEEEEEeecCCCchHHHHHHHHhccc
Confidence            3322   1112358999999999999999999987753

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=99.85  E-value=1.1e-21  Score=141.26  Aligned_cols=156  Identities=15%  Similarity=0.083  Sum_probs=96.4

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeE-E--EEEEe--CCceEEEeCCCCccccchhHHHHHHHHHH
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT-I--NFFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELV   94 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~-~--~~~~~--~~~~~iiDtpG~~~~~~~~~~~~~~~~~~   94 (198)
                      ...+|+++|.+|+|||||+++|++...   ...+.++... .  .+...  ...+.+|||||....          ..+.
T Consensus        27 ~~~ki~vvG~~~vGKSsLi~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~----------~~~~   93 (205)
T 1gwn_A           27 VKCKIVVVGDSQCGKTALLHVFAKDCF---PENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYY----------DNVR   93 (205)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHSCC---CSSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGG----------TTTG
T ss_pred             eeeEEEEECCCCCCHHHHHHHHhcCCC---CCCcCCccceeEEEEEEECCEEEEEEEEeCCCcHhh----------hHHH
Confidence            356899999999999999999998732   2222222221 1  11111  356899999996321          1111


Q ss_pred             HHHHhcccccceEEEEEeCCCCCCcCc--HHHHHHHHhh--CCcEEEEEeccCCCCcHHH-HHH---------HHHHHHH
Q 029158           95 KEYVSTRVSLKRVCLLIDTKWGVKPRD--HELISLMERS--QTKYQVVLTKTDTVFPIDV-ARR---------AMQIEES  160 (198)
Q Consensus        95 ~~~~~~~~~~d~vi~v~d~~~~~~~~~--~~~~~~~~~~--~~p~iiv~nK~Dl~~~~~~-~~~---------~~~~~~~  160 (198)
                      ..+   ...+|++++|+|+++......  ..++..+...  +.|+++|+||+|+...... .+.         .+..++.
T Consensus        94 ~~~---~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~  170 (205)
T 1gwn_A           94 PLS---YPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANM  170 (205)
T ss_dssp             GGG---CTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHH
T ss_pred             Hhh---ccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHH
Confidence            122   234899999999986322122  2344555442  6899999999999753211 000         1112222


Q ss_pred             HHhccCCCCCcEEeccC-CCCChHHHHHHHHHhh
Q 029158          161 LKANNSLVQPVMMVSSK-SGAGIRSLRTVLSKIA  193 (198)
Q Consensus       161 ~~~~~~~~~~v~~~Sa~-~~~gi~~l~~~i~~~~  193 (198)
                      .....  ..+++++||+ +++|+++++++|.+.+
T Consensus       171 ~~~~~--~~~~~e~SAk~~~~gv~~lf~~l~~~~  202 (205)
T 1gwn_A          171 AKQIG--AATYIECSALQSENSVRDIFHVATLAC  202 (205)
T ss_dssp             HHHHT--CSEEEECCTTTCHHHHHHHHHHHHHHH
T ss_pred             HHHcC--CCEEEEeeeccCCcCHHHHHHHHHHHH
Confidence            11111  2589999999 6899999999998764

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=99.85  E-value=1.1e-21  Score=156.88  Aligned_cols=152  Identities=18%  Similarity=0.228  Sum_probs=103.3

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCc-ccee----------------------e------cCCCCceeEEE---EEEeCC
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQW-GVVR----------------------T------SDKPGLTQTIN---FFKLGT   67 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~~-~~~~----------------------~------~~~~~~t~~~~---~~~~~~   67 (198)
                      ...+|+++|.+++|||||+++|++.. .+..                      .      ....++|.+..   +...+.
T Consensus         6 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~~   85 (458)
T 1f60_A            6 SHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKY   85 (458)
T ss_dssp             EEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSSE
T ss_pred             ceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCCc
Confidence            34789999999999999999998641 0000                      0      00134454432   333456


Q ss_pred             ceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCc-------CcHHHHHHHHhhCCc-EEEEE
Q 029158           68 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKP-------RDHELISLMERSQTK-YQVVL  139 (198)
Q Consensus        68 ~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~-------~~~~~~~~~~~~~~p-~iiv~  139 (198)
                      .+.+|||||+             ..+...+......+|++++|+|+.++..+       ...+.+..+...++| +++|+
T Consensus        86 ~~~iiDtPGh-------------~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~~v~~iivvi  152 (458)
T 1f60_A           86 QVTVIDAPGH-------------RDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAV  152 (458)
T ss_dssp             EEEEEECCCC-------------TTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTCCEEEEEE
T ss_pred             eEEEEECCCc-------------HHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHcCCCeEEEEE
Confidence            8999999997             33445566677789999999999875322       445556666666776 89999


Q ss_pred             eccCCCC--cHHHHHHHHHHHHHHHhccC--CCCCcEEeccCCCCChHH
Q 029158          140 TKTDTVF--PIDVARRAMQIEESLKANNS--LVQPVMMVSSKSGAGIRS  184 (198)
Q Consensus       140 nK~Dl~~--~~~~~~~~~~~~~~~~~~~~--~~~~v~~~Sa~~~~gi~~  184 (198)
                      ||+|+..  ....+...+++++.+.....  ...+++++||++|+|+.+
T Consensus       153 NK~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~  201 (458)
T 1f60_A          153 NKMDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIE  201 (458)
T ss_dssp             ECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTB
T ss_pred             EccccccCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCccc
Confidence            9999984  33344555556555444321  137899999999999874

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=99.85  E-value=4.1e-21  Score=147.58  Aligned_cols=156  Identities=14%  Similarity=0.005  Sum_probs=99.6

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE---EEEe--CCceEEEeCCCCccccchhHHHHHHHHHH
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELV   94 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~---~~~~--~~~~~iiDtpG~~~~~~~~~~~~~~~~~~   94 (198)
                      ...+|+++|.+|+|||||++++++..   ....+.+++.+..   +...  ...+.+|||||....          ....
T Consensus       154 ~~~~i~i~G~~~~GKssli~~~~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~----------~~~~  220 (332)
T 2wkq_A          154 ELIKCVVVGDGAVGKTCLLISYTTNA---FPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDY----------DRLR  220 (332)
T ss_dssp             TCEEEEEEESTTSSHHHHHHHHHHSC---CCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGG----------TTTG
T ss_pred             ceeEEEEECCCCCChHHHHHHHHhCC---CCcccCCcccceeEEEEEECCEEEEEEEEeCCCchhh----------hHHH
Confidence            45789999999999999999999873   2334444444322   1111  235669999996331          1111


Q ss_pred             HHHHhcccccceEEEEEeCCCCCCcCcH--HHHHHHHhh--CCcEEEEEeccCCCCcHHHHHH----------HHHHHHH
Q 029158           95 KEYVSTRVSLKRVCLLIDTKWGVKPRDH--ELISLMERS--QTKYQVVLTKTDTVFPIDVARR----------AMQIEES  160 (198)
Q Consensus        95 ~~~~~~~~~~d~vi~v~d~~~~~~~~~~--~~~~~~~~~--~~p~iiv~nK~Dl~~~~~~~~~----------~~~~~~~  160 (198)
                         ......+|++++|+|+++.....+.  .++..+...  +.|+++|+||+|+.......+.          .+...+.
T Consensus       221 ---~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~  297 (332)
T 2wkq_A          221 ---PLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAM  297 (332)
T ss_dssp             ---GGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHH
T ss_pred             ---HHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhcccccchhhhccccccccccHHHHHHH
Confidence               1223458999999999863222222  344555544  7999999999999765322111          1111222


Q ss_pred             HHhccCCCCCcEEeccCCCCChHHHHHHHHHhh
Q 029158          161 LKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA  193 (198)
Q Consensus       161 ~~~~~~~~~~v~~~Sa~~~~gi~~l~~~i~~~~  193 (198)
                      ....  ...+++++||++|+|+++++++|.+.+
T Consensus       298 ~~~~--~~~~~~~~Sa~~~~gi~~l~~~l~~~~  328 (332)
T 2wkq_A          298 AKEI--GAVKYLECSALTQRGLKTVFDEAIRAV  328 (332)
T ss_dssp             HHHT--TCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             HHHc--CCcEEEEecCCCCcCHHHHHHHHHHHH
Confidence            2111  123899999999999999999998765

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=99.84  E-value=6.5e-21  Score=158.61  Aligned_cols=167  Identities=20%  Similarity=0.190  Sum_probs=116.0

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCcee----------------------------------------
Q 029158           19 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQ----------------------------------------   58 (198)
Q Consensus        19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~----------------------------------------   58 (198)
                      -..|+|+++|.+++|||||+|+|++....+ .+... +|+                                        
T Consensus        49 i~lp~I~vvG~~saGKSSllnaL~g~~~LP-~g~g~-~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~  126 (772)
T 3zvr_A           49 LDLPQIAVVGGQSAGKSSVLENFVGRDFLP-RGSGI-VTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETD  126 (772)
T ss_dssp             GCCSEEEEEECTTTCHHHHHHHHHSSCCSC-CSSSC-SCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHhCCCccC-cCCcc-ccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHh
Confidence            357899999999999999999999974211 11111 110                                        


Q ss_pred             --------------EEEE-EEeCCceEEEeCCCCcccc---chhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcC
Q 029158           59 --------------TINF-FKLGTKLCLVDLPGYGFAY---AKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPR  120 (198)
Q Consensus        59 --------------~~~~-~~~~~~~~iiDtpG~~~~~---~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~  120 (198)
                                    ...+ .....++.++||||+....   ........+..++..|+.  ..+|++++|+|++.++...
T Consensus       127 ~~~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~--~~aDlIL~VVDAs~~~~~~  204 (772)
T 3zvr_A          127 RVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVT--KENCLILAVSPANSDLANS  204 (772)
T ss_dssp             HHHCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHT--STTEEEEEEEETTSCSSSC
T ss_pred             hhcCCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHh--cCCcEEEEEEcCCCCcchh
Confidence                          0111 1124579999999987632   123345567777878877  4589999999999987777


Q ss_pred             cH-HHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHH-HHHhccCCCCCcEEeccCCCCChHHHHHHHHHh
Q 029158          121 DH-ELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEE-SLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKI  192 (198)
Q Consensus       121 ~~-~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~Sa~~~~gi~~l~~~i~~~  192 (198)
                      +. .+++.+...+.|+++|+||+|+........   .+.+ ..........+++++||++|.|+++|.+.+.+.
T Consensus       205 d~l~ll~~L~~~g~pvIlVlNKiDlv~~~~~~~---~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e  275 (772)
T 3zvr_A          205 DALKIAKEVDPQGQRTIGVITKLDLMDEGTDAR---DVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE  275 (772)
T ss_dssp             HHHHHHHHHCTTCSSEEEEEECTTSSCTTCCSH---HHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCEEEEEeCcccCCcchhhH---HHHHHHhhhhhccCCceEEecccccccchhHHHHHHHH
Confidence            76 688888888899999999999987543211   1111 000111123578999999999999999999863

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=99.84  E-value=9.8e-21  Score=151.67  Aligned_cols=154  Identities=19%  Similarity=0.210  Sum_probs=95.1

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCcc-c----------------------eee------cCCCCceeEEE---EEEeCC
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQWG-V----------------------VRT------SDKPGLTQTIN---FFKLGT   67 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~~~-~----------------------~~~------~~~~~~t~~~~---~~~~~~   67 (198)
                      ...+|+++|.+++|||||+++|+.... +                      ...      ....++|.+..   +...+.
T Consensus        42 ~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~~  121 (467)
T 1r5b_A           42 EHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEHR  121 (467)
T ss_dssp             EEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSSE
T ss_pred             CeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCCe
Confidence            346899999999999999999974210 0                      000      11234454433   222356


Q ss_pred             ceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCC-------CcCcHHHHHHHHhhCCc-EEEEE
Q 029158           68 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGV-------KPRDHELISLMERSQTK-YQVVL  139 (198)
Q Consensus        68 ~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~-------~~~~~~~~~~~~~~~~p-~iiv~  139 (198)
                      .+.+|||||+             ..+...+......+|++++|+|+.++.       .....+.+..+...++| +++|+
T Consensus       122 ~~~iiDtPGh-------------~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivvi  188 (467)
T 1r5b_A          122 RFSLLDAPGH-------------KGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVI  188 (467)
T ss_dssp             EEEECCCCC------------------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEE
T ss_pred             EEEEEECCCc-------------HHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEE
Confidence            7999999997             344455666667799999999999864       24556667767777887 99999


Q ss_pred             eccCCCC----cHHHHHHHHHHHHHHHhc-cCC---CCCcEEeccCCCCChHHHH
Q 029158          140 TKTDTVF----PIDVARRAMQIEESLKAN-NSL---VQPVMMVSSKSGAGIRSLR  186 (198)
Q Consensus       140 nK~Dl~~----~~~~~~~~~~~~~~~~~~-~~~---~~~v~~~Sa~~~~gi~~l~  186 (198)
                      ||+|+..    .+..+...+++.+.+... ...   ..+++++||++|+|+++++
T Consensus       189 NK~Dl~~~~~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~  243 (467)
T 1r5b_A          189 NKMDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV  243 (467)
T ss_dssp             ECTTSTTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred             ECccCCCccccHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence            9999964    233344445555555433 211   4689999999999998744

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=99.84  E-value=1.2e-23  Score=150.79  Aligned_cols=155  Identities=18%  Similarity=0.142  Sum_probs=90.3

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeE--EEEEEe---CCceEEEeCCCCccccchhHHHHHHHHHH
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT--INFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELV   94 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~--~~~~~~---~~~~~iiDtpG~~~~~~~~~~~~~~~~~~   94 (198)
                      ...+|+++|.+|+|||||+++|++.....  ...+.++.+  ......   ...+.+|||||.....          ...
T Consensus        32 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~----------~~~   99 (199)
T 3l0i_B           32 YLFKLLLIGDSGVGKSCLLLRFADDTYTE--SYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFR----------TIT   99 (199)
T ss_dssp             EEEEEEEECCTTSCCTTTTTSSBCCCCCC--HHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCC----------CCS
T ss_pred             cceEEEEECCCCCCHHHHHHHHhcCCCCC--CcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHH----------HHH
Confidence            35799999999999999999999873111  111112211  222222   2579999999963321          111


Q ss_pred             HHHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHhh---CCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCC
Q 029158           95 KEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS---QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQP  170 (198)
Q Consensus        95 ~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~~---~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (198)
                      ..+   ...+|++++|+|+++...... ..++..+...   +.|+++|+||+|+........  ...++...   ..+.+
T Consensus       100 ~~~---~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~--~~~~~~~~---~~~~~  171 (199)
T 3l0i_B          100 SSY---YRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDY--TTAKEFAD---SLGIP  171 (199)
T ss_dssp             CC-----CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCS--CC-CHHHH---TTTCC
T ss_pred             HHH---hhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCH--HHHHHHHH---HcCCe
Confidence            122   234899999999986322111 2344444433   689999999999975432110  01111111   12478


Q ss_pred             cEEeccCCCCChHHHHHHHHHhhc
Q 029158          171 VMMVSSKSGAGIRSLRTVLSKIAR  194 (198)
Q Consensus       171 v~~~Sa~~~~gi~~l~~~i~~~~~  194 (198)
                      ++++||++++|+++++++|.+.+.
T Consensus       172 ~~~vSA~~g~gv~~l~~~l~~~l~  195 (199)
T 3l0i_B          172 FLETSAKNATNVEQSFMTMAAEIK  195 (199)
T ss_dssp             BCCCCC---HHHHHHHHHHTTTTT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            999999999999999999988765

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=99.83  E-value=6.2e-21  Score=135.94  Aligned_cols=157  Identities=15%  Similarity=0.101  Sum_probs=91.6

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeE---EEEEE--eCCceEEEeCCCCccccchhHHHHHHHHHH
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT---INFFK--LGTKLCLVDLPGYGFAYAKEEVKDAWEELV   94 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~---~~~~~--~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~   94 (198)
                      ...+|+++|.+|+|||||++++++.. ......++.++.+   ..+..  ....+.+|||+|.....         ..+.
T Consensus         5 ~~~kv~lvG~~~vGKSsL~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~---------~~~~   74 (192)
T 2cjw_A            5 TYYRVVLIGEQGVGKSTLANIFAGVH-DSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGEN---------EWLH   74 (192)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHS-CCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC-------------CTTG
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCc-CCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchh---------hhHH
Confidence            35789999999999999999999642 1222222222222   12211  12356889999963210         1111


Q ss_pred             HHHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHh----hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCC
Q 029158           95 KEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQ  169 (198)
Q Consensus        95 ~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~----~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  169 (198)
                      ..++..   +|++++|+|.++..+-.. ..++..+..    .+.|+++|+||+|+........  +..+. +..  ..+.
T Consensus        75 ~~~~~~---~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~--~~~~~-~a~--~~~~  146 (192)
T 2cjw_A           75 DHCMQV---GDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSV--SEGRA-XAV--VFDX  146 (192)
T ss_dssp             GGHHHH---CSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCH--HHHHH-HHH--HTTC
T ss_pred             Hhhccc---CCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccH--HHHHH-HHH--HhCC
Confidence            223322   789999999875211111 223333332    2689999999999964321110  11111 111  1146


Q ss_pred             CcEEeccCCCCChHHHHHHHHHhhc
Q 029158          170 PVMMVSSKSGAGIRSLRTVLSKIAR  194 (198)
Q Consensus       170 ~v~~~Sa~~~~gi~~l~~~i~~~~~  194 (198)
                      +++++||++|.|++++++++.+.+.
T Consensus       147 ~~~e~SA~~g~~v~~lf~~l~~~~~  171 (192)
T 2cjw_A          147 KFIETSAAVQHNVKELFEGIVRQVR  171 (192)
T ss_dssp             EEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred             ceEEeccccCCCHHHHHHHHHHHHH
Confidence            8999999999999999999987653

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.83  E-value=1.4e-20  Score=136.48  Aligned_cols=150  Identities=17%  Similarity=0.196  Sum_probs=81.3

Q ss_pred             CCCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHHH
Q 029158           18 APDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY   97 (198)
Q Consensus        18 ~~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~   97 (198)
                      ....++|+++|++|+|||||+++|++.........+.+ +....  .....+.+|||||+...          ......+
T Consensus         9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~-~~~~~--~~~~~~~l~Dt~G~~~~----------~~~~~~~   75 (218)
T 1nrj_B            9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEP-LSAAD--YDGSGVTLVDFPGHVKL----------RYKLSDY   75 (218)
T ss_dssp             -CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSC-EEETT--GGGSSCEEEECCCCGGG----------THHHHHH
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCc-eEEEE--eeCceEEEEECCCcHHH----------HHHHHHH
Confidence            45678999999999999999999998742111111111 11111  14568999999997432          1222233


Q ss_pred             Hhc-ccccceEEEEEeCC-C--CCCcCcHHHHHHHHh------hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhcc-C
Q 029158           98 VST-RVSLKRVCLLIDTK-W--GVKPRDHELISLMER------SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANN-S  166 (198)
Q Consensus        98 ~~~-~~~~d~vi~v~d~~-~--~~~~~~~~~~~~~~~------~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~  166 (198)
                      +.. ...+|++++|+|++ .  .+......+...+..      .+.|+++|+||+|+.......+....+++.+.... .
T Consensus        76 ~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~  155 (218)
T 1nrj_B           76 LKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIER  155 (218)
T ss_dssp             HHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHH
Confidence            322 23479999999998 3  222222222233221      37999999999999876554433333332221110 0


Q ss_pred             CCCCcEEeccCCCC
Q 029158          167 LVQPVMMVSSKSGA  180 (198)
Q Consensus       167 ~~~~v~~~Sa~~~~  180 (198)
                      ...+++++||+++.
T Consensus       156 ~~~~~~~~Sa~~~~  169 (218)
T 1nrj_B          156 RKKSLNEVERKINE  169 (218)
T ss_dssp             HHHHHHC-------
T ss_pred             Hhcccccccccccc
Confidence            12355666666554

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.83  E-value=5.4e-20  Score=142.91  Aligned_cols=170  Identities=19%  Similarity=0.238  Sum_probs=89.3

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCccceeecCC------CCceeEEEEEEe-------CCceEEEeCCCCccccchh---
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDK------PGLTQTINFFKL-------GTKLCLVDLPGYGFAYAKE---   84 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~------~~~t~~~~~~~~-------~~~~~iiDtpG~~~~~~~~---   84 (198)
                      ..+|+++|++|+|||||+++|++... ......      ...|........       ...+.+|||||+++.....   
T Consensus        37 ~~~I~vvG~~g~GKSTLln~L~~~~~-~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~  115 (361)
T 2qag_A           37 EFTLMVVGESGLGKSTLINSLFLTDL-YPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF  115 (361)
T ss_dssp             EECEEECCCTTSCHHHHHHHHTTCCC----------------CEEEEEEEEC----CEEEEEEEEC--------------
T ss_pred             CEEEEEEcCCCCCHHHHHHHHhCCCC-CCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHH
Confidence            46799999999999999999887631 111111      112322221111       2368999999996643211   


Q ss_pred             -HHHHHHHHHHHHHHhcccc----------cceEEEEEeC-CCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHH
Q 029158           85 -EVKDAWEELVKEYVSTRVS----------LKRVCLLIDT-KWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVAR  152 (198)
Q Consensus        85 -~~~~~~~~~~~~~~~~~~~----------~d~vi~v~d~-~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~  152 (198)
                       .....+......|+.....          +++++|+++. .+++...+..+++.+. .++|+|+|+||+|+.+..++..
T Consensus       116 ~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l~-~~~piIlV~NK~Dl~~~~ev~~  194 (361)
T 2qag_A          116 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIH-NKVNIVPVIAKADTLTLKERER  194 (361)
T ss_dssp             CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHTC-S-SCEEEEEECCSSSCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHhc-cCCCEEEEEECCCCCCHHHHHH
Confidence             1122222222345544322          3468888876 5566666666666664 4799999999999998776655


Q ss_pred             HHHHHHHHHHhccCCCCCcEEeccCCCCC---hHHHHHHHHHhhcc
Q 029158          153 RAMQIEESLKANNSLVQPVMMVSSKSGAG---IRSLRTVLSKIARF  195 (198)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~v~~~Sa~~~~g---i~~l~~~i~~~~~~  195 (198)
                      ....+.+...   ..+++++++||+++.|   +.++.+.|.+.+++
T Consensus       195 ~k~~i~~~~~---~~~i~~~~~Sa~~~~~~e~~~~l~~~i~~~ip~  237 (361)
T 2qag_A          195 LKKRILDEIE---EHNIKIYHLPDAESDEDEDFKEQTRLLKASIPF  237 (361)
T ss_dssp             HHHHHHHHTT---CC-CCSCCCC---------CHHHHHHHHHTCSC
T ss_pred             HHHHHHHHHH---HCCCCEEeCCCcCCCcchhHHHHHHHHHhcCCC
Confidence            4455555433   2358999999999887   33344445444443

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=99.83  E-value=2.6e-20  Score=151.80  Aligned_cols=154  Identities=18%  Similarity=0.226  Sum_probs=96.1

Q ss_pred             CCCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEE---------------eCCceEEEeCCCCccccc
Q 029158           18 APDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---------------LGTKLCLVDLPGYGFAYA   82 (198)
Q Consensus        18 ~~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~---------------~~~~~~iiDtpG~~~~~~   82 (198)
                      +....+|+++|.+|+|||||++++++....   ..+.+ |....+..               .+..+.+|||||..... 
T Consensus        38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~---~~~~~-t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~-  112 (535)
T 3dpu_A           38 HLQEIKVHLIGDGMAGKTSLLKQLIGETFD---PKESQ-THGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMH-  112 (535)
T ss_dssp             CCCEEEEEEESSSCSSHHHHHHHHHC---------------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTT-
T ss_pred             cccceEEEEECCCCCCHHHHHHHHhcCCCC---CCCCC-ccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHH-
Confidence            445689999999999999999999987321   22211 11111111               14679999999953321 


Q ss_pred             hhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhC--CcEEEEEeccCCCCcHHHHHHHHHHHHH
Q 029158           83 KEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQ--TKYQVVLTKTDTVFPIDVARRAMQIEES  160 (198)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~--~p~iiv~nK~Dl~~~~~~~~~~~~~~~~  160 (198)
                               .....++..   +|++++|+|+++.  .....++..+....  .|+++|+||+|+.......  .+.+++.
T Consensus       113 ---------~~~~~~l~~---~d~ii~V~D~s~~--~~~~~~~~~l~~~~~~~pvilV~NK~Dl~~~~~v~--~~~~~~~  176 (535)
T 3dpu_A          113 ---------ASHQFFMTR---SSVYMLLLDSRTD--SNKHYWLRHIEKYGGKSPVIVVMNKIDENPSYNIE--QKKINER  176 (535)
T ss_dssp             ---------TTCHHHHHS---SEEEEEEECGGGG--GGHHHHHHHHHHHSSSCCEEEEECCTTTCTTCCCC--HHHHHHH
T ss_pred             ---------HHHHHHccC---CcEEEEEEeCCCc--hhHHHHHHHHHHhCCCCCEEEEEECCCcccccccC--HHHHHHH
Confidence                     112233333   8999999999863  44456677777654  9999999999997643321  1222332


Q ss_pred             HHhccCCCCCcEEeccCCCCChHHHHHHHHHhhcc
Q 029158          161 LKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIARF  195 (198)
Q Consensus       161 ~~~~~~~~~~v~~~Sa~~~~gi~~l~~~i~~~~~~  195 (198)
                      ..   ..+.+++++||++|.|+++++++|.+.+..
T Consensus       177 ~~---~~~~~~~~vSA~~g~gi~eL~~~l~~~~~~  208 (535)
T 3dpu_A          177 FP---AIENRFHRISCKNGDGVESIAKSLKSAVLH  208 (535)
T ss_dssp             CG---GGTTCEEECCC-----CTTHHHHHHHHHTC
T ss_pred             HH---hcCCceEEEecCcccCHHHHHHHHHHHHhc
Confidence            22   224789999999999999999999987654

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=99.82  E-value=8.7e-20  Score=141.61  Aligned_cols=157  Identities=18%  Similarity=0.207  Sum_probs=100.6

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcC-----ccceeecCCCCcee-------------------EEEE------------
Q 029158           19 PDLPEIAFAGRSNVGKSSMLNALTRQ-----WGVVRTSDKPGLTQ-------------------TINF------------   62 (198)
Q Consensus        19 ~~~~~v~~vG~~~~GKSsli~~l~~~-----~~~~~~~~~~~~t~-------------------~~~~------------   62 (198)
                      ...++|+++|.+|+|||||+++|...     .++......+..+.                   ...+            
T Consensus        77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~~~~g~~l~d~~~~~~~~~~~~~~i~~~~~~~~~~~~  156 (355)
T 3p32_A           77 GNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTRTGGSILGDKTRMARLAVHPNAYIRPSPTSGTLGGV  156 (355)
T ss_dssp             CCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC----------------CHHHHTCTTEEEECCC--CCHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCCcccchhccchhhHHhhccCCCeeEEECCCCccccch
Confidence            35678999999999999999998632     12222222221111                   0000            


Q ss_pred             -----------EEeCCceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhh
Q 029158           63 -----------FKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERS  131 (198)
Q Consensus        63 -----------~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~  131 (198)
                                 ...+..+.||||||++...         ...       ...+|++++|+|+..+......  ...+  .
T Consensus       157 ~~~t~d~i~~~~~~~~~~iiiDTpGi~~~~---------~~~-------~~~aD~vl~V~d~~~~~~~~~l--~~~~--~  216 (355)
T 3p32_A          157 TRATRETVVLLEAAGFDVILIETVGVGQSE---------VAV-------ANMVDTFVLLTLARTGDQLQGI--KKGV--L  216 (355)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEEEECSCSSHH---------HHH-------HTTCSEEEEEEESSTTCTTTTC--CTTS--G
T ss_pred             hHHHHHHHHHHhhCCCCEEEEeCCCCCcHH---------HHH-------HHhCCEEEEEECCCCCccHHHH--HHhH--h
Confidence                       0125789999999975420         111       1449999999998754222111  1111  2


Q ss_pred             CCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhcc----CCCCCcEEeccCCCCChHHHHHHHHHhhcc
Q 029158          132 QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANN----SLVQPVMMVSSKSGAGIRSLRTVLSKIARF  195 (198)
Q Consensus       132 ~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~----~~~~~v~~~Sa~~~~gi~~l~~~i~~~~~~  195 (198)
                      +.|+++|+||+|+............+.+.+....    ....+++++||++|+|+++++++|.+.+..
T Consensus       217 ~~p~ivVlNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~  284 (355)
T 3p32_A          217 ELADIVVVNKADGEHHKEARLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV  284 (355)
T ss_dssp             GGCSEEEEECCCGGGHHHHHHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred             hcCCEEEEECCCCcChhHHHHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence            4699999999999876555555556665543332    224789999999999999999999887653

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=99.81  E-value=2.2e-20  Score=146.53  Aligned_cols=87  Identities=22%  Similarity=0.164  Sum_probs=47.2

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEE---------------------------eCCceEEEeC
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---------------------------LGTKLCLVDL   74 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~---------------------------~~~~~~iiDt   74 (198)
                      .+|+++|.+|+|||||+|+|++..  ...++++++|.+.....                           ...++.+|||
T Consensus         1 ~kI~ivG~pnvGKSTL~n~L~~~~--~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDt   78 (397)
T 1wxq_A            1 MEIGVVGKPNVGKSTFFSAATLVD--VEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDV   78 (397)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC----------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEEC
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCC--CcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEEC
Confidence            379999999999999999999984  56678888876533211                           0246999999


Q ss_pred             CCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCC
Q 029158           75 PGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG  116 (198)
Q Consensus        75 pG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~  116 (198)
                      ||+.....      ....+..+++.....+|++++|+|++.+
T Consensus        79 pG~~~~a~------~~~~l~~~~l~~i~~aD~il~VvD~~~~  114 (397)
T 1wxq_A           79 AGLVPGAH------EGRGLGNKFLDDLRMASALIHVVDATGK  114 (397)
T ss_dssp             C---------------------CCCSSTTCSEEEEEEETTCC
T ss_pred             CCcccchh------hhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence            99853211      1123445666677789999999999874

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=99.81  E-value=2.9e-19  Score=135.63  Aligned_cols=159  Identities=13%  Similarity=0.075  Sum_probs=97.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEE--EeCCceEEEeCCCCccccchhHHHHHHHHHHHHHHhc
Q 029158           23 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF--KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVST  100 (198)
Q Consensus        23 ~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~--~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~  100 (198)
                      +|+++|.+|+|||||++++.+.. ........++|....+.  ....++.+|||+|...-....     |  ....|++.
T Consensus         1 KIvllGdsgvGKTSLl~~~~~~~-~~~~~~~~~~Tig~~~~~v~~~v~LqIWDTAGQErf~~~~-----l--~~~~yyr~   72 (331)
T 3r7w_B            1 MVLLMGVRRCGKSSICKVVFHNM-QPLDTLYLESTSNPSLEHFSTLIDLAVMELPGQLNYFEPS-----Y--DSERLFKS   72 (331)
T ss_dssp             CEEEECSTTSSTTHHHHHHHSCC-CSGGGTTCCCCCSCCCEEECSSSCEEEEECCSCSSSCCCS-----H--HHHHHHTT
T ss_pred             CEEEECCCCCCHHHHHHHHHcCC-CCCccceecCeeeeeeEEEccEEEEEEEECCCchhccchh-----h--hhhhhccC
Confidence            58999999999999999887652 22111122233322221  234789999999974321000     0  13455554


Q ss_pred             ccccceEEEEEeCCCCCCcCcHHH---HHHHHh--hCCcEEEEEeccCCCCcHHHHH----HHHHHHHHHHhcc--CCCC
Q 029158          101 RVSLKRVCLLIDTKWGVKPRDHEL---ISLMER--SQTKYQVVLTKTDTVFPIDVAR----RAMQIEESLKANN--SLVQ  169 (198)
Q Consensus       101 ~~~~d~vi~v~d~~~~~~~~~~~~---~~~~~~--~~~p~iiv~nK~Dl~~~~~~~~----~~~~~~~~~~~~~--~~~~  169 (198)
                         ++++++|+|+++.+.....++   +..+..  .+.|+++|+||+|+....+..+    ......+.+....  ..++
T Consensus        73 ---a~~~IlV~Ditd~~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i  149 (331)
T 3r7w_B           73 ---VGALVYVIDSQDEYINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQV  149 (331)
T ss_dssp             ---CSEEEEECCCSSCTTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCE
T ss_pred             ---CCEEEEEEECCchHHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCc
Confidence               899999999987522222222   222222  2689999999999987654322    2222222222211  1357


Q ss_pred             CcEEeccCCCCChHHHHHHHHHhh
Q 029158          170 PVMMVSSKSGAGIRSLRTVLSKIA  193 (198)
Q Consensus       170 ~v~~~Sa~~~~gi~~l~~~i~~~~  193 (198)
                      +++++||++ .++.+.|..|.+.+
T Consensus       150 ~f~eTSAkd-~nV~eAFs~iv~~l  172 (331)
T 3r7w_B          150 SFYLTSIFD-HSIYEAFSRIVQKL  172 (331)
T ss_dssp             EEECCCSSS-SHHHHHHHHHHTTS
T ss_pred             eEEEeccCC-CcHHHHHHHHHHHH
Confidence            899999998 58999988887644

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=99.80  E-value=3.8e-19  Score=132.07  Aligned_cols=86  Identities=19%  Similarity=0.135  Sum_probs=58.6

Q ss_pred             ccceEEEEEeCCCC--CCcCc-HHHHHHHHh----hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEec
Q 029158          103 SLKRVCLLIDTKWG--VKPRD-HELISLMER----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVS  175 (198)
Q Consensus       103 ~~d~vi~v~d~~~~--~~~~~-~~~~~~~~~----~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~S  175 (198)
                      .+|++++|+|+++.  .+-.. ..++..+..    .+.|+++|+||+|+......    +..++.....  ...+++++|
T Consensus       162 ~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v----~~~~~~~~~~--~~~~~~e~S  235 (255)
T 3c5h_A          162 LVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYI----RDAHTFALSK--KNLQVVETS  235 (255)
T ss_dssp             ECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHH----HHHHHHHHTS--SSCCEEECB
T ss_pred             cCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHH----HHHHHHHHhc--CCCeEEEEE
Confidence            48999999999864  22221 233443332    37999999999999765443    2222222221  257899999


Q ss_pred             cCCCCChHHHHHHHHHhhc
Q 029158          176 SKSGAGIRSLRTVLSKIAR  194 (198)
Q Consensus       176 a~~~~gi~~l~~~i~~~~~  194 (198)
                      |+++.|+++++++|.+.+.
T Consensus       236 Ak~g~gv~elf~~l~~~l~  254 (255)
T 3c5h_A          236 ARSNVNVDLAFSTLVQLID  254 (255)
T ss_dssp             TTTTBSHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHhc
Confidence            9999999999999987653

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=99.80  E-value=3e-19  Score=144.72  Aligned_cols=116  Identities=18%  Similarity=0.224  Sum_probs=79.4

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCc-ccee-------------ec------CCCCceeE---EEEEEeCCceEEEeCCC
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQW-GVVR-------------TS------DKPGLTQT---INFFKLGTKLCLVDLPG   76 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~~-~~~~-------------~~------~~~~~t~~---~~~~~~~~~~~iiDtpG   76 (198)
                      ..++|+++|.+|+|||||+++|+... .+..             ..      ...++|..   ..+...+..+.+|||||
T Consensus        12 ~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTPG   91 (529)
T 2h5e_A           12 KRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPG   91 (529)
T ss_dssp             TEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCCC
T ss_pred             CCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECCC
Confidence            45789999999999999999998631 1100             00      11122221   23344467899999999


Q ss_pred             CccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcH
Q 029158           77 YGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPI  148 (198)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~  148 (198)
                      +.+-             ..........+|++++|+|+..+.......++..+...++|+++++||+|+....
T Consensus        92 ~~df-------------~~~~~~~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~~~ipiivviNK~Dl~~~~  150 (529)
T 2h5e_A           92 HEDF-------------SEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTPILTFMNKLDRDIRD  150 (529)
T ss_dssp             STTC-------------CHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHTTTTCCEEEEEECTTSCCSC
T ss_pred             ChhH-------------HHHHHHHHHHCCEEEEEEeCCccchHHHHHHHHHHHHcCCCEEEEEcCcCCcccc
Confidence            8431             1123333455999999999999877666777777777789999999999997653

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=99.80  E-value=2.7e-19  Score=145.53  Aligned_cols=115  Identities=17%  Similarity=0.245  Sum_probs=85.6

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCcc--------------------ceeecCCCCcee---EEEEEEeCCceEEEeCCC
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQWG--------------------VVRTSDKPGLTQ---TINFFKLGTKLCLVDLPG   76 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~~~--------------------~~~~~~~~~~t~---~~~~~~~~~~~~iiDtpG   76 (198)
                      +.++|+++|..++|||||..+|+....                    ........+.|.   ...+.+.+..+.++||||
T Consensus        30 r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPG  109 (548)
T 3vqt_A           30 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPG  109 (548)
T ss_dssp             TEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCCC
T ss_pred             ccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCC
Confidence            467899999999999999999973210                    000111122222   234556688999999999


Q ss_pred             CccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCc
Q 029158           77 YGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFP  147 (198)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~  147 (198)
                      +.             ++..+..+.+..+|++++|+|+.+|+..+...+++++...++|.++++||+|....
T Consensus       110 Hv-------------DF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~~~lp~i~fINK~Dr~~a  167 (548)
T 3vqt_A          110 HQ-------------DFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMRATPVMTFVNKMDREAL  167 (548)
T ss_dssp             GG-------------GCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSCCC
T ss_pred             cH-------------HHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHHhCCceEEEEecccchhc
Confidence            73             33445555566699999999999999999999999999999999999999999754

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=99.80  E-value=7e-19  Score=146.28  Aligned_cols=115  Identities=23%  Similarity=0.296  Sum_probs=80.3

Q ss_pred             CCCCCeEEEEcCCCCCHHHHHHHHhcCccc----eee------cC------CCCce---eEEEEEEeCCceEEEeCCCCc
Q 029158           18 APDLPEIAFAGRSNVGKSSMLNALTRQWGV----VRT------SD------KPGLT---QTINFFKLGTKLCLVDLPGYG   78 (198)
Q Consensus        18 ~~~~~~v~~vG~~~~GKSsli~~l~~~~~~----~~~------~~------~~~~t---~~~~~~~~~~~~~iiDtpG~~   78 (198)
                      .....+|+++|+.|+|||||+++|++....    ..+      .+      ..+.+   ....+......+.+|||||+.
T Consensus         6 ~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~   85 (665)
T 2dy1_A            6 GAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYG   85 (665)
T ss_dssp             CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSG
T ss_pred             cCCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCcc
Confidence            345678999999999999999999843110    000      00      01112   223344456789999999974


Q ss_pred             cccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCC
Q 029158           79 FAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV  145 (198)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~  145 (198)
                      +-          ......++   ..+|++++|+|+.++.......++..+...++|+++|+||+|+.
T Consensus        86 ~f----------~~~~~~~l---~~ad~~ilVvD~~~g~~~qt~~~~~~~~~~~ip~ilv~NKiD~~  139 (665)
T 2dy1_A           86 DF----------VGEIRGAL---EAADAALVAVSAEAGVQVGTERAWTVAERLGLPRMVVVTKLDKG  139 (665)
T ss_dssp             GG----------HHHHHHHH---HHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECGGGC
T ss_pred             ch----------HHHHHHHH---hhcCcEEEEEcCCcccchhHHHHHHHHHHccCCEEEEecCCchh
Confidence            31          11122222   33899999999998888777888888888899999999999997

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=99.79  E-value=1.7e-18  Score=144.61  Aligned_cols=118  Identities=19%  Similarity=0.229  Sum_probs=80.9

Q ss_pred             CCCCCCeEEEEcCCCCCHHHHHHHHhcCcc-ce---------eecC------CCCceeEEE---EEEeC-------CceE
Q 029158           17 PAPDLPEIAFAGRSNVGKSSMLNALTRQWG-VV---------RTSD------KPGLTQTIN---FFKLG-------TKLC   70 (198)
Q Consensus        17 ~~~~~~~v~~vG~~~~GKSsli~~l~~~~~-~~---------~~~~------~~~~t~~~~---~~~~~-------~~~~   70 (198)
                      +....++|+++|..|+|||||+++|+.... +.         ...+      ..+.|....   +...+       ..+.
T Consensus         6 ~~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~   85 (704)
T 2rdo_7            6 PIARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRIN   85 (704)
T ss_pred             CcccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEE
Confidence            345678999999999999999999975310 00         0111      123343322   22223       7899


Q ss_pred             EEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCc
Q 029158           71 LVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFP  147 (198)
Q Consensus        71 iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~  147 (198)
                      +|||||+.+             +..+.......+|++++|+|++.+.......++..+...++|+++|+||+|+...
T Consensus        86 liDTPG~~d-------------f~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~ip~ilviNKiD~~~~  149 (704)
T 2rdo_7           86 IIDTPGHVD-------------FTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANKYKVPRIAFVNKMDRMGA  149 (704)
T ss_pred             EEeCCCccc-------------hHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEeCCCcccc
Confidence            999999732             1112222233489999999999987777777777777778999999999999764

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=99.79  E-value=1.4e-18  Score=134.35  Aligned_cols=156  Identities=19%  Similarity=0.216  Sum_probs=92.6

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcC-----ccceeecCCCCce------------------------------------
Q 029158           19 PDLPEIAFAGRSNVGKSSMLNALTRQ-----WGVVRTSDKPGLT------------------------------------   57 (198)
Q Consensus        19 ~~~~~v~~vG~~~~GKSsli~~l~~~-----~~~~~~~~~~~~t------------------------------------   57 (198)
                      ...+.|+++|++|||||||+|+|++.     ..+......+.+.                                    
T Consensus        72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~~~~g~~l~d~~rm~~~~~~~~~~v~~~~~~~~lgg~  151 (349)
T 2www_A           72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCTSGGSLLGDKTRMTELSRDMNAYIRPSPTRGTLGGV  151 (349)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC----------------CCSTTCTTEEEECC---------
T ss_pred             cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCCCcCcchhchHHHHHHhcCCCCEEEEecCCccccccc
Confidence            34778999999999999999999862     1222222222111                                    


Q ss_pred             -eEEE-----EEEeCCceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhh
Q 029158           58 -QTIN-----FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERS  131 (198)
Q Consensus        58 -~~~~-----~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~  131 (198)
                       ++..     +...+.++.++||||+...   .      ..    .   ...+|++++|+|++.+...   +.+.. .-.
T Consensus       152 tr~~~~~~~~~~~~~~~~iliDT~Gi~~~---~------~~----l---~~~~d~vl~V~d~~~~~~~---~~i~~-~il  211 (349)
T 2www_A          152 TRTTNEAILLCEGAGYDIILIETVGVGQS---E------FA----V---ADMVDMFVLLLPPAGGDEL---QGIKR-GII  211 (349)
T ss_dssp             CTTHHHHHHHHHHTTCSEEEEECCCC--C---H------HH----H---HTTCSEEEEEECCC----------------C
T ss_pred             hHHHHHHHHhhccCCCCEEEEECCCcchh---h------hh----H---HhhCCEEEEEEcCCcchhH---HHhHH-HHH
Confidence             1000     0012467899999997532   0      11    1   1248999999999864221   11111 112


Q ss_pred             CCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhcc----CCCCCcEEeccCCCCChHHHHHHHHHhhc
Q 029158          132 QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANN----SLVQPVMMVSSKSGAGIRSLRTVLSKIAR  194 (198)
Q Consensus       132 ~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~----~~~~~v~~~Sa~~~~gi~~l~~~i~~~~~  194 (198)
                      ..|.++|+||+|+............+...+....    ....+++++||++|+|+++++++|.+.+.
T Consensus       212 ~~~~ivVlNK~Dl~~~~~~~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~  278 (349)
T 2www_A          212 EMADLVAVTKSDGDLIVPARRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQD  278 (349)
T ss_dssp             CSCSEEEECCCSGGGHHHHHHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             hcCCEEEEeeecCCCchhHHHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHH
Confidence            5789999999999764433333344443332211    11357899999999999999999988764

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=99.79  E-value=6.5e-19  Score=138.50  Aligned_cols=159  Identities=22%  Similarity=0.260  Sum_probs=104.1

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEE--E-eC-CceEEEeCCCCccccchhHHHHHHHHHHHHH
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF--K-LG-TKLCLVDLPGYGFAYAKEEVKDAWEELVKEY   97 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~--~-~~-~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~   97 (198)
                      ..|+++|++|||||||++.|++..  ..+.+++.+|......  . .+ ..+.++||||+.+......      .+...+
T Consensus       158 ~~VgLVG~~gAGKSTLL~~Lsg~~--~~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~------~L~~~f  229 (416)
T 1udx_A          158 ADVGLVGYPNAGKSSLLAAMTRAH--PKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGK------GLGLEF  229 (416)
T ss_dssp             CSEEEECCGGGCHHHHHHHHCSSC--CEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSC------CSCHHH
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCC--ccccCcccceecceeeEEEecCcceEEEEeccccccchhhhh------hhhHHH
Confidence            468999999999999999999874  4566777766543322  2 22 6799999999854321100      001123


Q ss_pred             HhcccccceEEEEEeCCCCCCcCcH-HHHHHHHh-----hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCc
Q 029158           98 VSTRVSLKRVCLLIDTKWGVKPRDH-ELISLMER-----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPV  171 (198)
Q Consensus        98 ~~~~~~~d~vi~v~d~~~~~~~~~~-~~~~~~~~-----~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v  171 (198)
                      +.....++.+++++|.+. -...+. .+.+++..     ...|.++|+||+|+.....    ...+.+.+..   ...++
T Consensus       230 l~~~era~~lL~vvDls~-~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~~~----~~~l~~~l~~---~g~~v  301 (416)
T 1udx_A          230 LRHIARTRVLLYVLDAAD-EPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEEEA----VKALADALAR---EGLAV  301 (416)
T ss_dssp             HHHHTSSSEEEEEEETTS-CHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCHHH----HHHHHHHHHT---TTSCE
T ss_pred             HHHHHHHHhhhEEeCCcc-CCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhHHH----HHHHHHHHHh---cCCeE
Confidence            333445899999999961 111111 12222222     2589999999999987522    2333333322   24689


Q ss_pred             EEeccCCCCChHHHHHHHHHhhccc
Q 029158          172 MMVSSKSGAGIRSLRTVLSKIARFA  196 (198)
Q Consensus       172 ~~~Sa~~~~gi~~l~~~i~~~~~~~  196 (198)
                      +++||++++|+++++++|.+.+...
T Consensus       302 i~iSA~~g~gi~eL~~~i~~~l~~~  326 (416)
T 1udx_A          302 LPVSALTGAGLPALKEALHALVRST  326 (416)
T ss_dssp             EECCTTTCTTHHHHHHHHHHHHHTS
T ss_pred             EEEECCCccCHHHHHHHHHHHHHhc
Confidence            9999999999999999999887543

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=99.79  E-value=4.3e-19  Score=137.54  Aligned_cols=91  Identities=20%  Similarity=0.223  Sum_probs=69.9

Q ss_pred             CCCCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEE---EEeCCceEEEeCCCCccccchhHHHHHHHHH
Q 029158           17 PAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF---FKLGTKLCLVDLPGYGFAYAKEEVKDAWEEL   93 (198)
Q Consensus        17 ~~~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~---~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~   93 (198)
                      ..++..+|+++|.||+|||||+|+|++..  ..+.++++||.+...   ...+.+++++||||+.......      ..+
T Consensus        68 ~k~g~a~V~ivG~PNvGKSTL~n~Lt~~~--~~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~~------~~~  139 (376)
T 4a9a_A           68 ARTGVASVGFVGFPSVGKSTLLSKLTGTE--SEAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDG------RGR  139 (376)
T ss_dssp             CBCSSEEEEEECCCCHHHHHHHHHHHSBC--CCGGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC-----------CH
T ss_pred             eecCCCeEEEECCCCCCHHHHHHHHhCCC--CcccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCCchhh------hHH
Confidence            45667899999999999999999999984  678999999987653   3347889999999986543211      223


Q ss_pred             HHHHHhcccccceEEEEEeCCC
Q 029158           94 VKEYVSTRVSLKRVCLLIDTKW  115 (198)
Q Consensus        94 ~~~~~~~~~~~d~vi~v~d~~~  115 (198)
                      ..+++.....+|++++|+|+++
T Consensus       140 g~~~l~~i~~ad~il~vvD~~~  161 (376)
T 4a9a_A          140 GKQVIAVARTCNLLFIILDVNK  161 (376)
T ss_dssp             HHHHHHHHHHCSEEEEEEETTS
T ss_pred             HHHHHHHHHhcCccccccccCc
Confidence            4456666667999999999985

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=99.78  E-value=2.5e-18  Score=128.71  Aligned_cols=124  Identities=20%  Similarity=0.172  Sum_probs=82.7

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEE---EEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHH
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---NFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE   96 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~---~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~   96 (198)
                      ..++|+++|.+|+|||||+|+|++. ......+.+++|...   .+...+..+.+|||||+.+......   .+...+..
T Consensus        38 ~~~~I~vvG~~g~GKSSLin~l~~~-~~~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~---~~~~~i~~  113 (270)
T 1h65_A           38 NSLTILVMGKGGVGKSSTVNSIIGE-RVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYIND---MALNIIKS  113 (270)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHTS-CCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECH---HHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCC-CcccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCccchH---HHHHHHHH
Confidence            4579999999999999999999987 444455666666432   2333466899999999865321111   11122222


Q ss_pred             HHhcccccceEEEEEeCCC-CCCcCcHHHHHHHHhh-C----CcEEEEEeccCCCCcH
Q 029158           97 YVSTRVSLKRVCLLIDTKW-GVKPRDHELISLMERS-Q----TKYQVVLTKTDTVFPI  148 (198)
Q Consensus        97 ~~~~~~~~d~vi~v~d~~~-~~~~~~~~~~~~~~~~-~----~p~iiv~nK~Dl~~~~  148 (198)
                      ++. ...+|+++||+|... .+...+.++++.+... +    .|+++|+||+|+.++.
T Consensus       114 ~~~-~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~  170 (270)
T 1h65_A          114 FLL-DKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPD  170 (270)
T ss_dssp             HTT-TCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGG
T ss_pred             Hhh-cCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcC
Confidence            322 235899999988754 3444455667666543 2    6999999999998654

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=99.78  E-value=1.5e-18  Score=141.38  Aligned_cols=136  Identities=21%  Similarity=0.271  Sum_probs=90.3

Q ss_pred             CCCCCeEEEEcCCCCCHHHHHHHHhcCccce--eecCCCCceeEEEEEEe------------------------------
Q 029158           18 APDLPEIAFAGRSNVGKSSMLNALTRQWGVV--RTSDKPGLTQTINFFKL------------------------------   65 (198)
Q Consensus        18 ~~~~~~v~~vG~~~~GKSsli~~l~~~~~~~--~~~~~~~~t~~~~~~~~------------------------------   65 (198)
                      ....++|+++|.+|+|||||+|+|++.. +.  ..+..+.|++...+...                              
T Consensus        62 ~~~~~~V~vvG~~n~GKSTLIN~Llg~~-~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~  140 (550)
T 2qpt_A           62 FDGKPMVLVAGQYSTGKTSFIQYLLEQE-VPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFL  140 (550)
T ss_dssp             TSSCCEEEEEEBTTSCHHHHHHHHHTSC-CSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCC
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHhCCc-cccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhccccc
Confidence            4567899999999999999999999983 32  34555555432211110                              


Q ss_pred             --------C----CceEEEeCCCCccccchhHHHHH--HHHHHHHHHhcccccceEEEEEeCCC-CCCcCcHHHHHHHHh
Q 029158           66 --------G----TKLCLVDLPGYGFAYAKEEVKDA--WEELVKEYVSTRVSLKRVCLLIDTKW-GVKPRDHELISLMER  130 (198)
Q Consensus        66 --------~----~~~~iiDtpG~~~~~~~~~~~~~--~~~~~~~~~~~~~~~d~vi~v~d~~~-~~~~~~~~~~~~~~~  130 (198)
                              +    .++.+|||||+.+..... ....  +......++.   .+|++++|+|+.. +....+..+++.+..
T Consensus       141 ~~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~-~~~~~~f~~~~~~~l~---~aD~il~VvDa~~~~~~~~~~~~l~~l~~  216 (550)
T 2qpt_A          141 NRFMCAQLPNQVLESISIIDTPGILSGAKQR-VSRGYDFPAVLRWFAE---RVDLIILLFDAHKLEISDEFSEAIGALRG  216 (550)
T ss_dssp             TTEEEEECCCHHHHHCEEEECCCBCC--------CCSCHHHHHHHHHH---HCSEEEEEEETTSCCCCHHHHHHHHHTTT
T ss_pred             ccceEEeccccccCCEEEEECcCCCCcchhH-HHHHhhHHHHHHHHHH---hCCEEEEEEeCCcCCCCHHHHHHHHHHHh
Confidence                    0    369999999986521100 0000  2233333333   3899999999987 455566677777776


Q ss_pred             hCCcEEEEEeccCCCCcHHHHHHHHHHH
Q 029158          131 SQTKYQVVLTKTDTVFPIDVARRAMQIE  158 (198)
Q Consensus       131 ~~~p~iiv~nK~Dl~~~~~~~~~~~~~~  158 (198)
                      .+.|+++|+||+|+....++......+.
T Consensus       217 ~~~pvilVlNK~Dl~~~~el~~~~~~l~  244 (550)
T 2qpt_A          217 HEDKIRVVLNKADMVETQQLMRVYGALM  244 (550)
T ss_dssp             CGGGEEEEEECGGGSCHHHHHHHHHHHH
T ss_pred             cCCCEEEEEECCCccCHHHHHHHHHHhh
Confidence            6789999999999998777666555554

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=99.78  E-value=9.1e-19  Score=146.12  Aligned_cols=118  Identities=17%  Similarity=0.184  Sum_probs=80.4

Q ss_pred             CCCCCCeEEEEcCCCCCHHHHHHHHhcCc-cce---------eecC------CCCceeE---EEEEEeCCceEEEeCCCC
Q 029158           17 PAPDLPEIAFAGRSNVGKSSMLNALTRQW-GVV---------RTSD------KPGLTQT---INFFKLGTKLCLVDLPGY   77 (198)
Q Consensus        17 ~~~~~~~v~~vG~~~~GKSsli~~l~~~~-~~~---------~~~~------~~~~t~~---~~~~~~~~~~~iiDtpG~   77 (198)
                      +....++|+++|.+|+|||||+++|+... ...         ...+      .+++|..   ..+...+..+.+|||||+
T Consensus         6 ~~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~   85 (693)
T 2xex_A            6 SLEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGH   85 (693)
T ss_dssp             CSTTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCC
T ss_pred             CcccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCC
Confidence            45667899999999999999999998421 000         0111      1223322   123333678999999998


Q ss_pred             ccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCc
Q 029158           78 GFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFP  147 (198)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~  147 (198)
                      .+-          ......++.   .+|++++|+|+.++....+...+..+...+.|+++|+||+|+...
T Consensus        86 ~df----------~~~~~~~l~---~aD~~llVvDa~~g~~~~~~~~~~~~~~~~~p~ilviNK~Dl~~~  142 (693)
T 2xex_A           86 VDF----------TVEVERSLR---VLDGAVTVLDAQSGVEPQTETVWRQATTYGVPRIVFVNKMDKLGA  142 (693)
T ss_dssp             SSC----------CHHHHHHHH---HCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSTTC
T ss_pred             cch----------HHHHHHHHH---HCCEEEEEECCCCCCcHHHHHHHHHHHHcCCCEEEEEECCCcccc
Confidence            542          111122222   399999999999988777777888888889999999999999864

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.78  E-value=2.2e-18  Score=135.58  Aligned_cols=173  Identities=18%  Similarity=0.216  Sum_probs=91.5

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCccceeecC-----CCCceeEEEE-------EEeCCceEEEeCCCCccccch---
Q 029158           19 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSD-----KPGLTQTINF-------FKLGTKLCLVDLPGYGFAYAK---   83 (198)
Q Consensus        19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~-----~~~~t~~~~~-------~~~~~~~~iiDtpG~~~~~~~---   83 (198)
                      .-..+|+++|++|+|||||++.|++........+     ...++ ....       ......+++|||+|++.....   
T Consensus        29 ~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~-~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~  107 (418)
T 2qag_C           29 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTV-QVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNC  107 (418)
T ss_dssp             CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CC-EEEEEECC------CEEEEEEECC-----------
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccce-eeeeEEEEEecCCcccceeeeechhhhhhccchhh
Confidence            3446799999999999999999998732111110     01111 1111       111236899999998654211   


Q ss_pred             -hHHHHHHHHHHHHHHhc----------ccccceEEEEEeCC-CCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHH
Q 029158           84 -EEVKDAWEELVKEYVST----------RVSLKRVCLLIDTK-WGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVA  151 (198)
Q Consensus        84 -~~~~~~~~~~~~~~~~~----------~~~~d~vi~v~d~~-~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~  151 (198)
                       ....+........++..          ...+++++|++++. +++...+..+++.+.. ++|+|+|+||+|+.+..++.
T Consensus       108 ~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~~-~v~iIlVinK~Dll~~~ev~  186 (418)
T 2qag_C          108 WQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE-KVNIIPLIAKADTLTPEECQ  186 (418)
T ss_dssp             CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHTT-TSEEEEEEESTTSSCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHhc-cCcEEEEEEcccCccHHHHH
Confidence             11111122222233211          11244566666665 5777777778887765 79999999999999887777


Q ss_pred             HHHHHHHHHHHhccCCCCCcEEeccCCCCChHHHHHHHHHhhccc
Q 029158          152 RRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIARFA  196 (198)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~v~~~Sa~~~~gi~~l~~~i~~~~~~~  196 (198)
                      .....+.+.+...   +++++++|+++++++++++..+...++++
T Consensus       187 ~~k~~i~~~~~~~---~i~~~~~sa~~~~~v~~~~~~l~~~iPfa  228 (418)
T 2qag_C          187 QFKKQIMKEIQEH---KIKIYEFPETDDEEENKLVKKIKDRLPLA  228 (418)
T ss_dssp             HHHHHHHHHHHHH---TCCCCCCC-----------------CCEE
T ss_pred             HHHHHHHHHHHHc---CCeEEeCCCCCCcCHHHHHHHHHhhCCcc
Confidence            6667777666554   57899999999999999999888877764

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=99.78  E-value=8.2e-19  Score=146.35  Aligned_cols=117  Identities=20%  Similarity=0.247  Sum_probs=78.7

Q ss_pred             CCCCCeEEEEcCCCCCHHHHHHHHhcCcc-c---eee------cC------CCCceeE---EEEEEeCCceEEEeCCCCc
Q 029158           18 APDLPEIAFAGRSNVGKSSMLNALTRQWG-V---VRT------SD------KPGLTQT---INFFKLGTKLCLVDLPGYG   78 (198)
Q Consensus        18 ~~~~~~v~~vG~~~~GKSsli~~l~~~~~-~---~~~------~~------~~~~t~~---~~~~~~~~~~~iiDtpG~~   78 (198)
                      ....++|+++|.+|+|||||+++|+.... .   ..+      .+      ..++|..   ..+...+..+.+|||||+.
T Consensus         9 ~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~   88 (691)
T 1dar_A            9 LKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHV   88 (691)
T ss_dssp             GGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSST
T ss_pred             cccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCcc
Confidence            34578999999999999999999984210 0   000      00      1223322   2233346789999999974


Q ss_pred             cccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCc
Q 029158           79 FAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFP  147 (198)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~  147 (198)
                      +-          ......++.   .+|++++|+|+..+........+..+...+.|+++|+||+|+...
T Consensus        89 df----------~~~~~~~l~---~aD~~ilVvDa~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~  144 (691)
T 1dar_A           89 DF----------TIEVERSMR---VLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDKTGA  144 (691)
T ss_dssp             TC----------HHHHHHHHH---HCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECTTSTTC
T ss_pred             ch----------HHHHHHHHH---HCCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCcccC
Confidence            31          111222232   389999999999988777777777788789999999999999764

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=99.77  E-value=2.7e-18  Score=122.78  Aligned_cols=155  Identities=15%  Similarity=0.107  Sum_probs=94.1

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeE---EEEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHHH
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT---INFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY   97 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~---~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~   97 (198)
                      ..+|+++|++|+|||||+++|++........+..+....   +.+......+.+|||||....          ......+
T Consensus         5 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~----------~~~~~~~   74 (199)
T 2f9l_A            5 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERY----------RRITSAY   74 (199)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGT----------TCCCHHH
T ss_pred             eEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhh----------hhhhHHH
Confidence            468999999999999999999987321111111111111   111112246788999995321          1112233


Q ss_pred             HhcccccceEEEEEeCCCCCCcCc-HHHHHHHHh---hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEE
Q 029158           98 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMM  173 (198)
Q Consensus        98 ~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~---~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  173 (198)
                      +.   .++++++|+|......... ..++..+..   .+.|+++|+||+|+.......  .........   ...+.++.
T Consensus        75 ~~---~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~--~~~a~~l~~---~~~~~~~d  146 (199)
T 2f9l_A           75 YR---GAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVP--TDEARAFAE---KNNLSFIE  146 (199)
T ss_dssp             HT---TCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSC--HHHHHHHHH---HTTCEEEE
T ss_pred             Hh---cCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCcC--HHHHHHHHH---HcCCeEEE
Confidence            33   3789999999876322222 234444433   368999999999996432110  011111111   12467899


Q ss_pred             eccCCCCChHHHHHHHHHhh
Q 029158          174 VSSKSGAGIRSLRTVLSKIA  193 (198)
Q Consensus       174 ~Sa~~~~gi~~l~~~i~~~~  193 (198)
                      +||+++.|+++++++|.+.+
T Consensus       147 ~Sal~~~~i~~l~~~l~~~~  166 (199)
T 2f9l_A          147 TSALDSTNVEEAFKNILTEI  166 (199)
T ss_dssp             CCTTTCTTHHHHHHHHHHHH
T ss_pred             EeCCCCCCHHHHHHHHHHHH
Confidence            99999999999999998765

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=99.77  E-value=1.9e-18  Score=133.39  Aligned_cols=156  Identities=18%  Similarity=0.141  Sum_probs=96.2

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcC-----ccceeecCCCCceeE-------------------EEEE-----------
Q 029158           19 PDLPEIAFAGRSNVGKSSMLNALTRQ-----WGVVRTSDKPGLTQT-------------------INFF-----------   63 (198)
Q Consensus        19 ~~~~~v~~vG~~~~GKSsli~~l~~~-----~~~~~~~~~~~~t~~-------------------~~~~-----------   63 (198)
                      .....|+++|++|+|||||++.|.+.     ..+......+.++..                   ..+.           
T Consensus        54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~~~~~il~d~~~~~~~~~~~~~~i~~~~~~~~l~g~  133 (341)
T 2p67_A           54 GNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGGA  133 (341)
T ss_dssp             SCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEECC-----CH
T ss_pred             CCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCCCCcceecccchHHhhccCCCceeecCccccccchh
Confidence            45678999999999999999999732     122323222222210                   0000           


Q ss_pred             ------------EeCCceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhh
Q 029158           64 ------------KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERS  131 (198)
Q Consensus        64 ------------~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~  131 (198)
                                  ..+.++.++||||+.+.          ...   .   ...+|++++|+|++.+.....   +.. ...
T Consensus       134 ~~~~~~~~~~~~~~~~~i~liDTpG~~~~----------~~~---~---~~~aD~vl~Vvd~~~~~~~~~---l~~-~~~  193 (341)
T 2p67_A          134 SQRARELMLLCEAAGYDVVIVETVGVGQS----------ETE---V---ARMVDCFISLQIAGGGDDLQG---IKK-GLM  193 (341)
T ss_dssp             HHHHHHHHHHHHHTTCSEEEEEEECCTTH----------HHH---H---HTTCSEEEEEECC------CC---CCH-HHH
T ss_pred             HHHHHHHHHHhhccCCCEEEEeCCCccch----------HHH---H---HHhCCEEEEEEeCCccHHHHH---HHH-hhh
Confidence                        12568999999998542          111   1   145999999999975422111   110 112


Q ss_pred             CCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccC----CCCCcEEeccCCCCChHHHHHHHHHhhc
Q 029158          132 QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNS----LVQPVMMVSSKSGAGIRSLRTVLSKIAR  194 (198)
Q Consensus       132 ~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~----~~~~v~~~Sa~~~~gi~~l~~~i~~~~~  194 (198)
                      +.|.++|+||+|+....+.......+++.+.....    ...+++++||++|+|+++++++|.+.+.
T Consensus       194 ~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~  260 (341)
T 2p67_A          194 EVADLIVINKDDGDNHTNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT  260 (341)
T ss_dssp             HHCSEEEECCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred             cccCEEEEECCCCCChHHHHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence            46889999999998765554444455554433221    1357899999999999999999988654

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=99.77  E-value=5.9e-18  Score=126.14  Aligned_cols=123  Identities=22%  Similarity=0.208  Sum_probs=81.9

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE---EEEeCCceEEEeCCCCccccchhHHHHHHHHHHHH
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE   96 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~---~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~   96 (198)
                      ...+|+++|.+|+|||||+|+|++. .......++++|....   +...+..+.+|||||+.+.....   +.+...+..
T Consensus        35 ~~~~I~lvG~~g~GKSSLin~l~~~-~~~~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~~~~---~~~~~~i~~  110 (262)
T 3def_A           35 NSMTVLVLGKGGVGKSSTVNSLIGE-QVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVN---HQALELIKG  110 (262)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHTS-CCSCCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEETTEEC---HHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCC-CCcccCCCCCcceeeEEEEEEECCeeEEEEECCCCCCcccch---HHHHHHHHH
Confidence            4578999999999999999999998 4445666666665432   33346789999999986532211   111222333


Q ss_pred             HHhcccccceEEEEEeCCC-CCCcCcHHHHHHHHhh-----CCcEEEEEeccCCCCc
Q 029158           97 YVSTRVSLKRVCLLIDTKW-GVKPRDHELISLMERS-----QTKYQVVLTKTDTVFP  147 (198)
Q Consensus        97 ~~~~~~~~d~vi~v~d~~~-~~~~~~~~~~~~~~~~-----~~p~iiv~nK~Dl~~~  147 (198)
                      ++. ...+|++++|++... .+...+..+++.+...     ..|+++|+||+|+...
T Consensus       111 ~l~-~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~  166 (262)
T 3def_A          111 FLV-NRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPP  166 (262)
T ss_dssp             HTT-TCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCS
T ss_pred             HHh-cCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCC
Confidence            332 235899999987754 2344445667666543     2499999999999643

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=99.77  E-value=1.6e-18  Score=134.82  Aligned_cols=160  Identities=23%  Similarity=0.237  Sum_probs=98.4

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCc---------------e---------------------------
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGL---------------T---------------------------   57 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~---------------t---------------------------   57 (198)
                      ..|+|+++|.+|+|||||+|+|++......... ..|               .                           
T Consensus        33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~-~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~  111 (360)
T 3t34_A           33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSG-IVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDET  111 (360)
T ss_dssp             CCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSS-SCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHH
T ss_pred             cCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCC-cccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHH
Confidence            567999999999999999999999632111110 000               0                           


Q ss_pred             --------------eEEEEE-EeCCceEEEeCCCCccccc---hhHHHHHHHHHHHHHHhcccccceEEEEEeCCCC-CC
Q 029158           58 --------------QTINFF-KLGTKLCLVDLPGYGFAYA---KEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG-VK  118 (198)
Q Consensus        58 --------------~~~~~~-~~~~~~~iiDtpG~~~~~~---~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~-~~  118 (198)
                                    ....+. ....++++|||||+.....   .......+..+...|+..   +|++++++|+... ..
T Consensus       112 ~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~---~d~iilvv~~~~~~~~  188 (360)
T 3t34_A          112 DRETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEK---PNCIILAISPANQDLA  188 (360)
T ss_dssp             HHTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHS---SSEEEEEEEETTSCGG
T ss_pred             HHhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhc---CCeEEEEeecccCCcC
Confidence                          001111 1245799999999866421   223444556666666655   8989999886542 22


Q ss_pred             c-CcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEeccCCCCChHHHHHH
Q 029158          119 P-RDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTV  188 (198)
Q Consensus       119 ~-~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~~~gi~~l~~~  188 (198)
                      . ....++..+...+.|+++|+||+|+.......  ...++.   .......+++++|++.+.++++.++.
T Consensus       189 ~~~~~~l~~~~~~~~~~~i~V~nK~Dl~~~~~~~--~~~~~~---~~~~~~~~~~~v~~~s~~~i~~~~~~  254 (360)
T 3t34_A          189 TSDAIKISREVDPSGDRTFGVLTKIDLMDKGTDA--VEILEG---RSFKLKYPWVGVVNRSQADINKNVDM  254 (360)
T ss_dssp             GCHHHHHHHHSCTTCTTEEEEEECGGGCCTTCCS--HHHHTT---SSSCCSSCCEEECCCCHHHHHTTCCH
T ss_pred             CHHHHHHHHHhcccCCCEEEEEeCCccCCCcccH--HHHHcC---ccccccCCeEEEEECChHHhccCCCH
Confidence            2 22444555555678999999999998654211  111111   12233578999999998877765443

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=99.76  E-value=5.7e-18  Score=126.07  Aligned_cols=167  Identities=18%  Similarity=0.179  Sum_probs=99.1

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHh-----cCccceeecCCCCc----------------eeEEE-----------------
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALT-----RQWGVVRTSDKPGL----------------TQTIN-----------------   61 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~-----~~~~~~~~~~~~~~----------------t~~~~-----------------   61 (198)
                      ....+++.|.+|+||||++++|.     +. ++..+...+..                ..+..                 
T Consensus        13 ~~~i~~~~GkgGvGKTTl~~~La~~l~~g~-~v~vvd~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (262)
T 1yrb_A           13 ASMIVVFVGTAGSGKTTLTGEFGRYLEDNY-KVAYVNLDTGVKELPYEPSIDVREFVTVEEIMREGYGPNGAIVESYDRL   91 (262)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHTTTS-CEEEEECCSSCSCCSSCCSEEGGGTCCHHHHHTTTCCHHHHHHHHHHHH
T ss_pred             ceEEEEEeCCCCCCHHHHHHHHHHHHHCCC-eEEEEeCCCCccccCCCCCCChhhcccHHHHhhccCCCCCcEEecHHHH
Confidence            45678999999999999999998     44 34444333221                00000                 


Q ss_pred             ------------EEEeCCceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHH-H----
Q 029158           62 ------------FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHE-L----  124 (198)
Q Consensus        62 ------------~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~-~----  124 (198)
                                  ....+..+.+|||||..+..       .+..+...+...... +++++++|+.......+.. .    
T Consensus        92 ~~~~~~l~~~l~~~~~~~d~iiiDtpG~~~~~-------~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~  163 (262)
T 1yrb_A           92 MEKFNEYLNKILRLEKENDYVLIDTPGQMETF-------LFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFA  163 (262)
T ss_dssp             HTTHHHHHHHHHHHHHHCSEEEEECCSSHHHH-------HHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHhhcCCEEEEeCCCccchh-------hhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHH
Confidence                        00013579999999973311       001111122223344 7899999987643333222 1    


Q ss_pred             HHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHH------HHH-----------------HhccCCCCCcEEeccCCCCC
Q 029158          125 ISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIE------ESL-----------------KANNSLVQPVMMVSSKSGAG  181 (198)
Q Consensus       125 ~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~------~~~-----------------~~~~~~~~~v~~~Sa~~~~g  181 (198)
                      .......+.|+++|+||+|+....+.++..+.++      +.+                 ........+++++||++++|
T Consensus       164 ~~~~~~~~~p~~iv~NK~D~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~g  243 (262)
T 1yrb_A          164 LLIDLRLGATTIPALNKVDLLSEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREG  243 (262)
T ss_dssp             HHHHHHHTSCEEEEECCGGGCCHHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTT
T ss_pred             HHHhcccCCCeEEEEecccccccccHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCccc
Confidence            1222334799999999999987654332222211      111                 01112235899999999999


Q ss_pred             hHHHHHHHHHhhcc
Q 029158          182 IRSLRTVLSKIARF  195 (198)
Q Consensus       182 i~~l~~~i~~~~~~  195 (198)
                      +++++++|.+.++.
T Consensus       244 i~~l~~~i~~~~~~  257 (262)
T 1yrb_A          244 FEDLETLAYEHYCT  257 (262)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcc
Confidence            99999999987653

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=99.75  E-value=1.4e-18  Score=123.66  Aligned_cols=154  Identities=16%  Similarity=0.105  Sum_probs=93.5

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEE---EEEEeC--CceEEEeCCCCccccchhHHHHHHHHHH
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---NFFKLG--TKLCLVDLPGYGFAYAKEEVKDAWEELV   94 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~---~~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~~~~   94 (198)
                      ...+|+++|++|+|||||++.+++.....  ...+..+.+.   .+...+  ..+.+|||||.....          .+.
T Consensus        28 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~--~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~----------~~~   95 (191)
T 1oix_A           28 YLFKVVLIGDSGVGKSNLLSRFTRNEFNL--ESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYR----------AIT   95 (191)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHHSCCCC--SCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSS----------CCC
T ss_pred             cceEEEEECcCCCCHHHHHHHHhcCCCCC--CCCCccceEEEEEEEEECCEEEEEEEEECCCCcchh----------hhh
Confidence            34789999999999999999999874211  1112112111   121122  346679999964321          112


Q ss_pred             HHHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHh---hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCC
Q 029158           95 KEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQP  170 (198)
Q Consensus        95 ~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~---~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (198)
                      ..+++.   ++++++|+|......... ..++..+..   .+.|+++|+||+|+.......  ....+....   .....
T Consensus        96 ~~~~~~---~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~--~~~a~~l~~---~~~~~  167 (191)
T 1oix_A           96 SAYYRG---AVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVP--TDEARAFAE---KNGLS  167 (191)
T ss_dssp             HHHHTT---CCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSC--HHHHHHHHH---HTTCE
T ss_pred             HHHhhc---CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccC--HHHHHHHHH---HcCCE
Confidence            233332   788999999875322122 224444432   368999999999996432110  011111111   12467


Q ss_pred             cEEeccCCCCChHHHHHHHHHhh
Q 029158          171 VMMVSSKSGAGIRSLRTVLSKIA  193 (198)
Q Consensus       171 v~~~Sa~~~~gi~~l~~~i~~~~  193 (198)
                      ++.+||+++.|+++++++|.+.+
T Consensus       168 ~ld~Sald~~~v~~l~~~l~~~i  190 (191)
T 1oix_A          168 FIETSALDSTNVEAAFQTILTEI  190 (191)
T ss_dssp             EEECCTTTCTTHHHHHHHHHHHH
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHh
Confidence            89999999999999999998754

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=99.75  E-value=5.1e-18  Score=120.59  Aligned_cols=133  Identities=20%  Similarity=0.245  Sum_probs=79.6

Q ss_pred             CCCCCeEEEEcCCCCCHHHHHHHHhcCccceee-cCCCCceeEEEEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHH
Q 029158           18 APDLPEIAFAGRSNVGKSSMLNALTRQWGVVRT-SDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE   96 (198)
Q Consensus        18 ~~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~-~~~~~~t~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~   96 (198)
                      ....++|+++|++|+|||||+++|++....... ...+.++.+    ..+..+.+|||||.......      +......
T Consensus        45 ~~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~----~~~~~~~l~Dt~G~~~~~~~------~~~~~~~  114 (193)
T 2ged_A           45 GSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAAD----YDGSGVTLVDFPGHVKLRYK------LSDYLKT  114 (193)
T ss_dssp             -CCCCEEEEECCTTSSHHHHHHHHHHSSCC------------C----CCCTTCSEEEETTCCBSSCC------HHHHHHH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceeee----ecCCeEEEEECCCCchHHHH------HHHHHHh
Confidence            356789999999999999999999987421111 111111111    14678999999997543111      1222222


Q ss_pred             HHhcccccceEEEEEeCCCCCCcC--cHHHH-HHHHh------hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHh
Q 029158           97 YVSTRVSLKRVCLLIDTKWGVKPR--DHELI-SLMER------SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKA  163 (198)
Q Consensus        97 ~~~~~~~~d~vi~v~d~~~~~~~~--~~~~~-~~~~~------~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~  163 (198)
                         ....+|++++|+|++......  ...++ ..+..      .+.|+++|+||+|+.......+..+.+.+.+..
T Consensus       115 ---~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~l~~  187 (193)
T 2ged_A          115 ---RAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQK  187 (193)
T ss_dssp             ---HGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHH
T ss_pred             ---hcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCCHHHHHHHHHHHHHH
Confidence               223489999999997211110  11222 22221      379999999999999877666666666665543

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=99.74  E-value=2.2e-17  Score=125.23  Aligned_cols=169  Identities=18%  Similarity=0.199  Sum_probs=86.0

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCC------CceeEE---E----EEEeCCceEEEeCCCCccccch--
Q 029158           19 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKP------GLTQTI---N----FFKLGTKLCLVDLPGYGFAYAK--   83 (198)
Q Consensus        19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~------~~t~~~---~----~~~~~~~~~iiDtpG~~~~~~~--   83 (198)
                      .-..+|+++|++|+|||||++.|++.. .......+      ..+...   .    .......+++|||+|++.....  
T Consensus        16 ~~~~~I~lvG~nG~GKSTLl~~L~g~~-~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e   94 (301)
T 2qnr_A           16 GFEFTLMVVGESGLGKSTLINSLFLTD-LYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRD   94 (301)
T ss_dssp             --CEEEEEEEETTSSHHHHHHHHHC-------------------------CEEEEC---CCEEEEEEEEC----------
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHhCCC-ccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHH
Confidence            445789999999999999999988751 11111100      011111   1    1112357899999998543210  


Q ss_pred             --hHHHHHHHHHHHHHHhccc----------ccceEEEEEeCCC-CCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHH
Q 029158           84 --EEVKDAWEELVKEYVSTRV----------SLKRVCLLIDTKW-GVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDV  150 (198)
Q Consensus        84 --~~~~~~~~~~~~~~~~~~~----------~~d~vi~v~d~~~-~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~  150 (198)
                        ......+......++....          .++.++|+.++.. ++...+.++++.+.. +.|+++|+||.|+.+..+.
T Consensus        95 ~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~~~l~~l~~-~~~iilV~~K~Dl~~~~e~  173 (301)
T 2qnr_A           95 CFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIHN-KVNIVPVIAKADTLTLKER  173 (301)
T ss_dssp             -CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHHHHHHHHTT-TSCEEEEECCGGGSCHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHHHHHHHHHh-cCCEEEEEEeCCCCCHHHH
Confidence              1111112222223433321          1234666666543 466655555555542 5799999999999987665


Q ss_pred             HHHHHHHHHHHHhccCCCCCcEEeccCCCCChHHHHHHHHHhh
Q 029158          151 ARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA  193 (198)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~v~~~Sa~~~~gi~~l~~~i~~~~  193 (198)
                      ....+.+++.....   +++++++||+++ |++++++++.+.+
T Consensus       174 ~~~~~~~~~~~~~~---~~~~~e~Sa~~~-~v~e~f~~l~~~i  212 (301)
T 2qnr_A          174 ERLKKRILDEIEEH---NIKIYHLPDAES-DEDEDFKEQTRLL  212 (301)
T ss_dssp             HHHHHHHHHHHHHT---TCCCCCCC----------CHHHHHHH
T ss_pred             HHHHHHHHHHHHHc---CCeEEecCCccc-cccHHHHHHHHHh
Confidence            54455555555443   478999999999 9999988777654

>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}

Probab=99.73  E-value=2.7e-18  Score=142.17  Aligned_cols=160  Identities=23%  Similarity=0.280  Sum_probs=113.2

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCcc-ce---ee------cCC------CCceeE---EEEEEeCCceEEEeCCCCcccc
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQWG-VV---RT------SDK------PGLTQT---INFFKLGTKLCLVDLPGYGFAY   81 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~~~-~~---~~------~~~------~~~t~~---~~~~~~~~~~~iiDtpG~~~~~   81 (198)
                      .++|+++|+.++|||||..+|+.... +.   .+      .++      .+.|..   ..+.+.+..+.++||||+.   
T Consensus         2 IRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~---   78 (638)
T 3j25_A            2 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHM---   78 (638)
T ss_dssp             CCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSS---
T ss_pred             eeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcH---
Confidence            46799999999999999999974210 00   00      111      112222   2344557889999999983   


Q ss_pred             chhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHH
Q 029158           82 AKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESL  161 (198)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~  161 (198)
                                ++..+..+.+..+|++++|+|+.+|+..++..+++++...++|.++++||+|....+- ....+.+++.+
T Consensus        79 ----------DF~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~~lp~i~~INKmDr~~a~~-~~~~~~i~~~l  147 (638)
T 3j25_A           79 ----------DFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIPTIFFINKIDQNGIDL-STVYQDIKEKL  147 (638)
T ss_dssp             ----------STHHHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHHTCSCEECCEECCSSSCCS-HHHHHHHHHTT
T ss_pred             ----------HHHHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEeccccccCCH-HHHHHHHHHHh
Confidence                      3455666677779999999999999999999999999999999999999999865321 11111111100


Q ss_pred             ----------------------------------------------------------HhccCCCCCcEEeccCCCCChH
Q 029158          162 ----------------------------------------------------------KANNSLVQPVMMVSSKSGAGIR  183 (198)
Q Consensus       162 ----------------------------------------------------------~~~~~~~~~v~~~Sa~~~~gi~  183 (198)
                                                                                ........|++..||.++.|++
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~~gSa~~~~Gv~  227 (638)
T 3j25_A          148 SAEIVIKQKVELYPNVCVTNFTESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFQNCSLFPLYHGSAKSNIGID  227 (638)
T ss_dssp             CCCCCCCCCCCSCGGGCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHHHHHHHTSCCCCCCCCSTTCCSHH
T ss_pred             CCCccccceeEeeccccccccchhhhhhhhhcccHHHHhhhccCCccchHHHHHHHhhhhcccccccccccccccCCCch
Confidence                                                                      0011224789999999999999


Q ss_pred             HHHHHHHHhhc
Q 029158          184 SLRTVLSKIAR  194 (198)
Q Consensus       184 ~l~~~i~~~~~  194 (198)
                      .|++.|.+.++
T Consensus       228 ~LLd~i~~~~p  238 (638)
T 3j25_A          228 NLIEVITNKFY  238 (638)
T ss_dssp             HHHHHHHHSCC
T ss_pred             hHhhhhhcccc
Confidence            99999988765

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=99.73  E-value=4.5e-18  Score=123.48  Aligned_cols=152  Identities=11%  Similarity=0.070  Sum_probs=93.9

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCc----cceeecCCCCceeE----------EE-E------------------EEe
Q 029158           19 PDLPEIAFAGRSNVGKSSMLNALTRQW----GVVRTSDKPGLTQT----------IN-F------------------FKL   65 (198)
Q Consensus        19 ~~~~~v~~vG~~~~GKSsli~~l~~~~----~~~~~~~~~~~t~~----------~~-~------------------~~~   65 (198)
                      ...+.|+++|.+|+|||||+++|++..    .+..+...++++.+          .. +                  ...
T Consensus        28 ~~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (221)
T 2wsm_A           28 SGTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFS  107 (221)
T ss_dssp             HTCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGT
T ss_pred             cCceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcC
Confidence            356789999999999999999998641    22333333322110          00 0                  012


Q ss_pred             CCceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCC
Q 029158           66 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV  145 (198)
Q Consensus        66 ~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~  145 (198)
                      +..+.+|||+|.....              .++.  ...+.+++|+|+..+..    .........+.|+++|+||+|+.
T Consensus       108 ~~d~iiidt~G~~~~~--------------~~~~--~~~~~~i~vvd~~~~~~----~~~~~~~~~~~~~iiv~NK~Dl~  167 (221)
T 2wsm_A          108 DCDLLLIENVGNLICP--------------VDFD--LGENYRVVMVSVTEGDD----VVEKHPEIFRVADLIVINKVALA  167 (221)
T ss_dssp             TCSEEEEEEEEBSSGG--------------GGCC--CSCSEEEEEEEGGGCTT----HHHHCHHHHHTCSEEEEECGGGH
T ss_pred             CCCEEEEeCCCCCCCC--------------chhc--cccCcEEEEEeCCCcch----hhhhhhhhhhcCCEEEEecccCC
Confidence            3567888888842110              0111  13577899999976421    12222233468999999999996


Q ss_pred             CcH--HHHHHHHHHHHHHHhccCCCCCcEEeccCCCCChHHHHHHHHHhhcc
Q 029158          146 FPI--DVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIARF  195 (198)
Q Consensus       146 ~~~--~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~~~gi~~l~~~i~~~~~~  195 (198)
                      ...  +.++..+.+++.     ....+++++||++|+|+++++++|.+.+..
T Consensus       168 ~~~~~~~~~~~~~~~~~-----~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~  214 (221)
T 2wsm_A          168 EAVGADVEKMKADAKLI-----NPRAKIIEMDLKTGKGFEEWIDFLRGILNV  214 (221)
T ss_dssp             HHHTCCHHHHHHHHHHH-----CTTSEEEECBTTTTBTHHHHHHHHHHHHC-
T ss_pred             cchhhHHHHHHHHHHHh-----CCCCeEEEeecCCCCCHHHHHHHHHHHHHH
Confidence            431  233333333321     234789999999999999999999887653

>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}

Probab=99.70  E-value=5.7e-17  Score=135.85  Aligned_cols=118  Identities=18%  Similarity=0.206  Sum_probs=83.4

Q ss_pred             CCCCCCeEEEEcCCCCCHHHHHHHHhcCccc----ee------------ecCCCCceeE---EEEEEe-------CCceE
Q 029158           17 PAPDLPEIAFAGRSNVGKSSMLNALTRQWGV----VR------------TSDKPGLTQT---INFFKL-------GTKLC   70 (198)
Q Consensus        17 ~~~~~~~v~~vG~~~~GKSsli~~l~~~~~~----~~------------~~~~~~~t~~---~~~~~~-------~~~~~   70 (198)
                      |-++.++|+++|+.++|||||..+|+.....    ..            .....+.|..   +.+...       +..+.
T Consensus         9 p~~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iN   88 (709)
T 4fn5_A            9 PINRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVN   88 (709)
T ss_dssp             CGGGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEE
T ss_pred             chHHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEE
Confidence            3356789999999999999999999843100    00            0112223322   222222       35799


Q ss_pred             EEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCc
Q 029158           71 LVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFP  147 (198)
Q Consensus        71 iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~  147 (198)
                      ++||||+.+             +..+....+..+|++++|+|+.+|+..++..+++++...++|.++++||+|....
T Consensus        89 lIDTPGHvD-------------F~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~~lp~i~~iNKiDr~~a  152 (709)
T 4fn5_A           89 VIDTPGHVD-------------FTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKYGVPRIVYVNKMDRQGA  152 (709)
T ss_dssp             EECCCSCTT-------------CHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHHTCCEEEEEECSSSTTC
T ss_pred             EEeCCCCcc-------------cHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEccccccCc
Confidence            999999833             3344555555599999999999999999999999999999999999999998643

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=99.69  E-value=3.9e-17  Score=125.97  Aligned_cols=87  Identities=23%  Similarity=0.247  Sum_probs=56.7

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEE--EEe------------------CCceEEEeCCCCccc
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF--FKL------------------GTKLCLVDLPGYGFA   80 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~--~~~------------------~~~~~iiDtpG~~~~   80 (198)
                      ..+|+++|.+|+|||||+|+|++..  ....+++++|.+...  ...                  +..+.+|||||+...
T Consensus         2 ~~kI~IVG~pnvGKSTL~n~Lt~~~--~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~   79 (363)
T 1jal_A            2 GFKCGIVGLPNVGKSTLFNALTKAG--IEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAG   79 (363)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHTC--------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCC--CcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCccc
Confidence            3689999999999999999999974  556777777765331  111                  257999999998643


Q ss_pred             cchhHHHHHHHHHHHHHHhcccccceEEEEEeCCC
Q 029158           81 YAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKW  115 (198)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~  115 (198)
                      ....      ..+..+++.....+|++++|+|+++
T Consensus        80 a~~~------~gl~~~fl~~ir~ad~il~VvD~~~  108 (363)
T 1jal_A           80 ASKG------EGLGNKFLANIRETDAIGHVVRCFE  108 (363)
T ss_dssp             HHHH------GGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred             cccc------chHHHHHHHHHHhcCeEEEEEecCC
Confidence            2110      1122234444456999999999986

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=99.69  E-value=5.1e-17  Score=125.96  Aligned_cols=86  Identities=24%  Similarity=0.276  Sum_probs=58.4

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEE--E----------------------EeCCceEEEeCCCC
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF--F----------------------KLGTKLCLVDLPGY   77 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~--~----------------------~~~~~~~iiDtpG~   77 (198)
                      .+|+++|.+|+|||||+|+|++..  ....+++++|...+.  .                      ..+..+.+|||||+
T Consensus         2 ~~v~IVG~pnvGKSTL~n~L~~~~--~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl   79 (368)
T 2dby_A            2 LAVGIVGLPNVGKSTLFNALTRAN--ALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGL   79 (368)
T ss_dssp             CSEEEECCSSSSHHHHHHHHHHHH--TTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCC--CcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCc
Confidence            579999999999999999999863  445667766654221  1                      12457999999998


Q ss_pred             ccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCC
Q 029158           78 GFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKW  115 (198)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~  115 (198)
                      .......      ..+.+.++.....+|++++|+|+++
T Consensus        80 ~~~a~~~------~~lg~~fl~~ir~ad~ii~VvD~~~  111 (368)
T 2dby_A           80 VKGAHKG------EGLGNQFLAHIREVAAIAHVLRCFP  111 (368)
T ss_dssp             CCCCCSS------SCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred             ccccccc------chHHHHHHHHHHhCCEEEEEEECCC
Confidence            6532211      0111233334445999999999986

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=99.68  E-value=2.8e-17  Score=139.71  Aligned_cols=151  Identities=19%  Similarity=0.236  Sum_probs=95.7

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCccce--------eec------CCCCceeE---EEEEEe----------------
Q 029158           19 PDLPEIAFAGRSNVGKSSMLNALTRQWGVV--------RTS------DKPGLTQT---INFFKL----------------   65 (198)
Q Consensus        19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~~~--------~~~------~~~~~t~~---~~~~~~----------------   65 (198)
                      ...++|+++|.+|+|||||+++|+......        ...      ...+.|..   ..+...                
T Consensus        17 ~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~   96 (842)
T 1n0u_A           17 TNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGN   96 (842)
T ss_dssp             GGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSS
T ss_pred             ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCC
Confidence            346789999999999999999998641100        000      11222321   111111                


Q ss_pred             CCceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCC
Q 029158           66 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV  145 (198)
Q Consensus        66 ~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~  145 (198)
                      +..+.+|||||+.+-          ......++   ..+|++++|+|+.++....+...+..+...++|+++|+||+|+.
T Consensus        97 ~~~i~liDTPG~~df----------~~~~~~~l---~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~ilviNK~D~~  163 (842)
T 1n0u_A           97 SFLINLIDSPGHVDF----------SSEVTAAL---RVTDGALVVVDTIEGVCVQTETVLRQALGERIKPVVVINKVDRA  163 (842)
T ss_dssp             EEEEEEECCCCCCSS----------CHHHHHHH---HTCSEEEEEEETTTBSCHHHHHHHHHHHHTTCEEEEEEECHHHH
T ss_pred             CceEEEEECcCchhh----------HHHHHHHH---HhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCeEEEEECCCcc
Confidence            457899999998542          11122333   34999999999999877777777777777789999999999987


Q ss_pred             C------cH----HHHHHHHHHHHHHHhc----------cCCCCCcEEeccCCCCCh
Q 029158          146 F------PI----DVARRAMQIEESLKAN----------NSLVQPVMMVSSKSGAGI  182 (198)
Q Consensus       146 ~------~~----~~~~~~~~~~~~~~~~----------~~~~~~v~~~Sa~~~~gi  182 (198)
                      .      ++    +.....+.+.+.+...          .....++...|+++|+++
T Consensus       164 ~~e~~~~~~e~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~p~~~~v~~~sa~~g~~~  220 (842)
T 1n0u_A          164 LLELQVSKEDLYQTFARTVESVNVIVSTYADEVLGDVQVYPARGTVAFGSGLHGWAF  220 (842)
T ss_dssp             HHTSCCCHHHHHHHHHHHHHHHHHHHHHHSCGGGCCCCCCGGGTCEEEEETTTTEEE
T ss_pred             hhhhccCHHHHHHHHHHHHHHHHHHHhhccccccCceeeceEEeeeEEeeccccccc
Confidence            3      22    2334445555444321          111236788899988763

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=99.68  E-value=3.7e-16  Score=120.23  Aligned_cols=155  Identities=21%  Similarity=0.193  Sum_probs=92.9

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcC-----ccceeecCCCCcee-----------------EEEEE-------------
Q 029158           19 PDLPEIAFAGRSNVGKSSMLNALTRQ-----WGVVRTSDKPGLTQ-----------------TINFF-------------   63 (198)
Q Consensus        19 ~~~~~v~~vG~~~~GKSsli~~l~~~-----~~~~~~~~~~~~t~-----------------~~~~~-------------   63 (198)
                      .....++++|++|||||||++.|.+.     ..+...+..+.++.                 +...+             
T Consensus        53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~G~  132 (337)
T 2qm8_A           53 GRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLGGV  132 (337)
T ss_dssp             CCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhheeeccCcccccccCcccccccch
Confidence            34567999999999999999999831     12322222221111                 00011             


Q ss_pred             ------------EeCCceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHH-HHHHh
Q 029158           64 ------------KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELI-SLMER  130 (198)
Q Consensus        64 ------------~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~-~~~~~  130 (198)
                                  ..+.++.++||||+....          ..+      ...+|.+++++|+..+..   .+.+ ..+. 
T Consensus       133 tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~----------~~v------~~~~d~vl~v~d~~~~~~---~~~i~~~i~-  192 (337)
T 2qm8_A          133 AAKTRETMLLCEAAGFDVILVETVGVGQSE----------TAV------ADLTDFFLVLMLPGAGDE---LQGIKKGIF-  192 (337)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEEEECSSSSCH----------HHH------HTTSSEEEEEECSCC---------CCTTHH-
T ss_pred             HHHHHHHHHHHhcCCCCEEEEECCCCCcch----------hhH------HhhCCEEEEEEcCCCccc---HHHHHHHHh-
Confidence                        126789999999986531          111      134899999999864311   1100 0111 


Q ss_pred             hCCcEEEEEeccCCCCcHH-HHHHHHHHHHHHHhccC----CCCCcEEeccCCCCChHHHHHHHHHhhc
Q 029158          131 SQTKYQVVLTKTDTVFPID-VARRAMQIEESLKANNS----LVQPVMMVSSKSGAGIRSLRTVLSKIAR  194 (198)
Q Consensus       131 ~~~p~iiv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~----~~~~v~~~Sa~~~~gi~~l~~~i~~~~~  194 (198)
                       +.+.++++||+|+....+ .....+.+...+.....    ...+++++||+++.|+++|++.|.+.+.
T Consensus       193 -~~~~ivvlNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~  260 (337)
T 2qm8_A          193 -ELADMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS  260 (337)
T ss_dssp             -HHCSEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred             -ccccEEEEEchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence             246788899999865332 22233344433332221    1367999999999999999999988764

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.65  E-value=2.1e-15  Score=118.36  Aligned_cols=170  Identities=16%  Similarity=0.297  Sum_probs=100.5

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCccce--eecC-CCCceeE-EEE-EEeC---CceEEEeCCCCccccchh----H---
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQWGVV--RTSD-KPGLTQT-INF-FKLG---TKLCLVDLPGYGFAYAKE----E---   85 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~~~~~--~~~~-~~~~t~~-~~~-~~~~---~~~~iiDtpG~~~~~~~~----~---   85 (198)
                      .++++++|++|+|||||++.|++.. +.  .... .++.+.. ..+ ....   ..++++|++|++......    .   
T Consensus        42 i~~vaLvG~nGaGKSTLln~L~G~~-l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~  120 (427)
T 2qag_B           42 CFNILCVGETGLGKSTLMDTLFNTK-FEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVE  120 (427)
T ss_dssp             EEEEEEECSTTSSSHHHHHHHHTSC-C-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHH
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCcc-ccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHH
Confidence            3459999999999999999999873 11  1111 1222322 111 1111   368999999997643221    1   


Q ss_pred             -HHHHHHHHHHHHHhcc------cc--cc-eEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHH
Q 029158           86 -VKDAWEELVKEYVSTR------VS--LK-RVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAM  155 (198)
Q Consensus        86 -~~~~~~~~~~~~~~~~------~~--~d-~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~  155 (198)
                       +...+..++.++....      ..  +| ++++++|+.+++...+.++++.+. .+.|+|+|+||+|..++.+......
T Consensus       121 ~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Dieilk~L~-~~~~vI~Vi~KtD~Lt~~E~~~l~~  199 (427)
T 2qag_B          121 FIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLVTMKKLD-SKVNIIPIIAKADAISKSELTKFKI  199 (427)
T ss_dssp             HHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHHHHHHHTC-SCSEEEEEESCGGGSCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHHHHHHHHh-hCCCEEEEEcchhccchHHHHHHHH
Confidence             1223333333332111      11  22 366778998888888888888887 5899999999999999888877777


Q ss_pred             HHHHHHHhccCCCCCcEEeccCCCCChHHHHHHHHHhhccc
Q 029158          156 QIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIARFA  196 (198)
Q Consensus       156 ~~~~~~~~~~~~~~~v~~~Sa~~~~gi~~l~~~i~~~~~~~  196 (198)
                      .+.+.+..   .+++++++|..+ +...+....+...++++
T Consensus       200 ~I~~~L~~---~gi~I~~is~~d-~~~~~~~~~~~~~~PFa  236 (427)
T 2qag_B          200 KITSELVS---NGVQIYQFPTDD-ESVAEINGTMNAHLPFA  236 (427)
T ss_dssp             HHHHHHBT---TBCCCCCCC------CCSHHHHHTTC-CCB
T ss_pred             HHHHHHHH---cCCcEEecCCCc-hhHHHHHhhhcCCCCeE
Confidence            77765543   368888888643 22333444455555544

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=99.65  E-value=2.8e-18  Score=133.49  Aligned_cols=136  Identities=16%  Similarity=0.226  Sum_probs=90.8

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC-----ccceeecCCCCceeEEEEEEeCCceEEEeCCCCccccchhH-HHHHHHHHHH
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQ-----WGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEE-VKDAWEELVK   95 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~-----~~~~~~~~~~~~t~~~~~~~~~~~~~iiDtpG~~~~~~~~~-~~~~~~~~~~   95 (198)
                      .+|+++|.+|+|||||+|+|++.     ......++.+++|........+..+.++||||+.+...... ..   ...+.
T Consensus       161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~~~liDtPG~~~~~~~~~~l~---~~~l~  237 (368)
T 3h2y_A          161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEESSLYDTPGIINHHQMAHYVG---KQSLK  237 (368)
T ss_dssp             SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSSSCEEEECCCBCCTTSGGGGSC---HHHHH
T ss_pred             ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecCCeEEEeCCCcCcHHHHHHHhh---HHHHH
Confidence            57999999999999999999985     12455788899998887777777799999999866421111 11   11122


Q ss_pred             HHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHH
Q 029158           96 EYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESL  161 (198)
Q Consensus        96 ~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~  161 (198)
                       .+......+.++|++++.+.........++.+...+.|+++++||+|.....+.++..+.+++.+
T Consensus       238 -~~~~~~~i~~~~~~l~~~~~~~~g~l~~~d~l~~~~~~~~~v~nk~d~~~~~~~~~~~~~~~~~~  302 (368)
T 3h2y_A          238 -LITPTKEIKPMVFQLNEEQTLFFSGLARFDYVSGGRRAFTCHFSNRLTIHRTKLEKADELYKNHA  302 (368)
T ss_dssp             -HHSCSSCCCCEEEEECTTEEEEETTTEEEEEEESSSEEEEEEECTTSCEEEEEHHHHHHHHHHHB
T ss_pred             -HhccccccCceEEEEcCCCEEEEcceEEEEEecCCCceEEEEecCccccccccHHHHHHHHHHHh
Confidence             22223457889999998542222232224444455789999999999998877777666666653

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=99.64  E-value=3.9e-18  Score=132.76  Aligned_cols=154  Identities=16%  Similarity=0.164  Sum_probs=102.7

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC----ccceeecCCCCceeEEEEEEeCCceEEEeCCCCccccchhH-HHHHHHHHHH
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQ----WGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEE-VKDAWEELVK   95 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~----~~~~~~~~~~~~t~~~~~~~~~~~~~iiDtpG~~~~~~~~~-~~~~~~~~~~   95 (198)
                      ..+|+++|.+|+|||||+|+|++.    ......++.+++|........+.++.++||||+........ ..   .... 
T Consensus       162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~~~liDtPG~~~~~~~~~~l~---~~~l-  237 (369)
T 3ec1_A          162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLESGATLYDTPGIINHHQMAHFVD---ARDL-  237 (369)
T ss_dssp             TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEECSTTCEEEECCSCCCCSSGGGGSC---TTTH-
T ss_pred             cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEEeCCCeEEEeCCCcCcHHHHHHHHh---HHHH-
Confidence            357999999999999999999975    12356778889999888777777899999999865421111 00   1112 


Q ss_pred             HHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEec
Q 029158           96 EYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVS  175 (198)
Q Consensus        96 ~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~S  175 (198)
                      ..+......+.++|++++.+.........++.+...+.|+++++||+|.....+.+...+.+++.+.      ..+.+.+
T Consensus       238 ~~~~~~~~i~~~~~~l~~~~~~~~g~l~~l~~l~~~~~~~~~v~~k~d~~~~~~~~~~~~~~~~~~g------~~l~p~~  311 (369)
T 3ec1_A          238 KIITPKREIHPRVYQLNEGQTLFFGGLARLDYIKGGRRSFVCYMANELTVHRTKLEKADSLYANQLG------ELLSPPS  311 (369)
T ss_dssp             HHHSCSSCCCCEEEEECTTEEEEETTTEEEEEEESSSEEEEEEECTTSCEEEEEGGGHHHHHHHHBT------TTBCSSC
T ss_pred             HHHhcccccCceEEEEcCCceEEECCEEEEEEccCCCceEEEEecCCcccccccHHHHHHHHHHhcC------CccCCCC
Confidence            2222224589999999995422222222244444557899999999999887766666666665532      4566666


Q ss_pred             cCCCCChHH
Q 029158          176 SKSGAGIRS  184 (198)
Q Consensus       176 a~~~~gi~~  184 (198)
                      +....++.+
T Consensus       312 ~~~~~~~~~  320 (369)
T 3ec1_A          312 KRYAAEFPP  320 (369)
T ss_dssp             GGGTTTCCC
T ss_pred             chhhhhccC
Confidence            665555443

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=99.58  E-value=7.9e-15  Score=106.64  Aligned_cols=60  Identities=17%  Similarity=0.190  Sum_probs=42.5

Q ss_pred             hCCcEEEEEeccCCCCcH--HHHHHHHHHHHHHHhccCCCCCcEEeccCCCCChHHHHHHHHHhhcc
Q 029158          131 SQTKYQVVLTKTDTVFPI--DVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIARF  195 (198)
Q Consensus       131 ~~~p~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~~~gi~~l~~~i~~~~~~  195 (198)
                      .+.|.++|+||+|+....  ..++....+++    . ....+++++||++|+|+++++++|.+.+..
T Consensus       163 ~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~----~-~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~  224 (226)
T 2hf9_A          163 MKTADLIVINKIDLADAVGADIKKMENDAKR----I-NPDAEVVLLSLKTMEGFDKVLEFIEKSVKE  224 (226)
T ss_dssp             HTTCSEEEEECGGGHHHHTCCHHHHHHHHHH----H-CTTSEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             hhcCCEEEEeccccCchhHHHHHHHHHHHHH----h-CCCCeEEEEEecCCCCHHHHHHHHHHHHHh
Confidence            367899999999996432  22222222222    1 224689999999999999999999887654

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=99.57  E-value=5.4e-14  Score=104.96  Aligned_cols=142  Identities=23%  Similarity=0.361  Sum_probs=89.0

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCccceeec-------CCCCcee--EEE----EEEeCCceEEEeCCCCccccchhH---
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTS-------DKPGLTQ--TIN----FFKLGTKLCLVDLPGYGFAYAKEE---   85 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~-------~~~~~t~--~~~----~~~~~~~~~iiDtpG~~~~~~~~~---   85 (198)
                      .+++++|++|+|||||++.|++... ...+       +.+.+..  ...    .......++++|++|++.......   
T Consensus         3 f~v~lvG~nGaGKSTLln~L~g~~~-~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~   81 (270)
T 3sop_A            3 FNIMVVGQSGLGKSTLVNTLFKSQV-SRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE   81 (270)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHHHHC-------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCCC-CCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence            5799999999999999999997531 1111       1111111  111    111235789999999876432211   


Q ss_pred             -HHHH----HHHHHHHHHhcc-------cccceEEEEEeCC-CCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHH
Q 029158           86 -VKDA----WEELVKEYVSTR-------VSLKRVCLLIDTK-WGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVAR  152 (198)
Q Consensus        86 -~~~~----~~~~~~~~~~~~-------~~~d~vi~v~d~~-~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~  152 (198)
                       ..+.    +.......++..       ..+.+.++++|.. +++...+.++++.+... +++|+|+||+|..+..+...
T Consensus        82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~~~l~~L~~~-~~vI~Vi~K~D~lt~~e~~~  160 (270)
T 3sop_A           82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDLEFMKHLSKV-VNIIPVIAKADTMTLEEKSE  160 (270)
T ss_dssp             HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHHHHHHHHHTT-SEEEEEETTGGGSCHHHHHH
T ss_pred             HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHHHHHHHHHhc-CcEEEEEeccccCCHHHHHH
Confidence             1111    122222222211       1256678888854 78888888888888876 99999999999999988888


Q ss_pred             HHHHHHHHHHhcc
Q 029158          153 RAMQIEESLKANN  165 (198)
Q Consensus       153 ~~~~~~~~~~~~~  165 (198)
                      ....+++.+....
T Consensus       161 ~k~~i~~~l~~~~  173 (270)
T 3sop_A          161 FKQRVRKELEVNG  173 (270)
T ss_dssp             HHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHcC
Confidence            8888887777653

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=99.49  E-value=6.9e-13  Score=104.13  Aligned_cols=166  Identities=17%  Similarity=0.201  Sum_probs=97.3

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCccceee---cCCCCceeEEEEEEeC--CceEEEeCCCCccccchhHHHHHHHHHHH
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQWGVVRT---SDKPGLTQTINFFKLG--TKLCLVDLPGYGFAYAKEEVKDAWEELVK   95 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~~~~~~~---~~~~~~t~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~~~~~   95 (198)
                      ...++++|++|+|||||+|.|++.......   .+...+++...++...  .+++++|+||++...  ...    .+++.
T Consensus        69 ~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~~--~~~----~~~L~  142 (413)
T 1tq4_A           69 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTN--FPP----DTYLE  142 (413)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSS--CCH----HHHHH
T ss_pred             CeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccchH--HHH----HHHHH
Confidence            347999999999999999999984211111   1111122222233322  478999999986421  111    22222


Q ss_pred             HHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCC---------cHHHHHHHHHHHHHH----H
Q 029158           96 EYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF---------PIDVARRAMQIEESL----K  162 (198)
Q Consensus        96 ~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~---------~~~~~~~~~~~~~~~----~  162 (198)
                      .+  .....+..++ ++... .......+...+...+.|+++|+||.|+.-         +....+..+.+.+..    .
T Consensus       143 ~~--~L~~~~~~~~-lS~G~-~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~  218 (413)
T 1tq4_A          143 KM--KFYEYDFFII-ISATR-FKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFR  218 (413)
T ss_dssp             HT--TGGGCSEEEE-EESSC-CCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             Hc--CCCccCCeEE-eCCCC-ccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHH
Confidence            11  1112344444 67654 355556667777777899999999999751         112333444444432    1


Q ss_pred             hccCCCCCcEEecc--CCCCChHHHHHHHHHhhccc
Q 029158          163 ANNSLVQPVMMVSS--KSGAGIRSLRTVLSKIARFA  196 (198)
Q Consensus       163 ~~~~~~~~v~~~Sa--~~~~gi~~l~~~i~~~~~~~  196 (198)
                      .......++|++|+  ..+.|++++.+.+.+.++..
T Consensus       219 ~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg  254 (413)
T 1tq4_A          219 ENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIY  254 (413)
T ss_dssp             HTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGG
T ss_pred             hcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCccc
Confidence            21112357899999  56677999999999877643

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=99.47  E-value=1.3e-13  Score=110.79  Aligned_cols=160  Identities=16%  Similarity=0.189  Sum_probs=92.1

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHh------cCccceeecCCC--Cce---------e-EEEEEE----------------
Q 029158           19 PDLPEIAFAGRSNVGKSSMLNALT------RQWGVVRTSDKP--GLT---------Q-TINFFK----------------   64 (198)
Q Consensus        19 ~~~~~v~~vG~~~~GKSsli~~l~------~~~~~~~~~~~~--~~t---------~-~~~~~~----------------   64 (198)
                      .....|+++|.+|+||||++++|.      +. ++..+...+  +..         + .+.++.                
T Consensus        99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~-kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~  177 (504)
T 2j37_W           99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGW-KTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVE  177 (504)
T ss_dssp             S--EEEEEECSTTSSHHHHHHHHHHHHHHTTC-CEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCC-eEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHH
Confidence            345689999999999999999998      44 333222211  000         0 011111                


Q ss_pred             ----eCCceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcE-EEEE
Q 029158           65 ----LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKY-QVVL  139 (198)
Q Consensus        65 ----~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~-iiv~  139 (198)
                          .+.++.||||||.....  ..   .+.++. .... ...+|.+++|+|+..+..  .....+.+.+. .|+ .+|+
T Consensus       178 ~~~~~~~DvvIIDTpG~~~~~--~~---l~~el~-~~~~-~i~pd~vllVvDa~~g~~--~~~~a~~~~~~-~~i~gvVl  247 (504)
T 2j37_W          178 KFKNENFEIIIVDTSGRHKQE--DS---LFEEML-QVAN-AIQPDNIVYVMDASIGQA--CEAQAKAFKDK-VDVASVIV  247 (504)
T ss_dssp             HHHHTTCCEEEEEECCCCTTC--HH---HHHHHH-HHHH-HHCCSEEEEEEETTCCTT--HHHHHHHHHHH-HCCCCEEE
T ss_pred             HHHHCCCcEEEEeCCCCcccc--hh---HHHHHH-HHHh-hhcCceEEEEEecccccc--HHHHHHHHHhh-cCceEEEE
Confidence                35689999999975421  11   111111 1111 124899999999987532  34444444442 675 8999


Q ss_pred             eccCCCCcHHHHHHHHHHHHHHHh------------ccCCCCCcEEeccCCCCC-hHHHHHHHHHh
Q 029158          140 TKTDTVFPIDVARRAMQIEESLKA------------NNSLVQPVMMVSSKSGAG-IRSLRTVLSKI  192 (198)
Q Consensus       140 nK~Dl~~~~~~~~~~~~~~~~~~~------------~~~~~~~v~~~Sa~~~~g-i~~l~~~i~~~  192 (198)
                      ||+|.......  ... +.+.+..            ......|.+++|+..|.| +++|++++.+.
T Consensus       248 NK~D~~~~~g~--~l~-~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~  310 (504)
T 2j37_W          248 TKLDGHAKGGG--ALS-AVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL  310 (504)
T ss_dssp             ECTTSCCCCTH--HHH-HHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred             eCCccccchHH--HHH-HHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence            99999854322  111 1111100            001123456789999999 99999999865

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=99.42  E-value=2.5e-13  Score=105.76  Aligned_cols=88  Identities=23%  Similarity=0.201  Sum_probs=47.4

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEE--------------------eCCceEEEeCCCCcc
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK--------------------LGTKLCLVDLPGYGF   79 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~--------------------~~~~~~iiDtpG~~~   79 (198)
                      ...+|+++|.+|+|||||+|+|++..  ....+++++|.+.....                    .+..+.+|||||+..
T Consensus        21 ~~~kvgIVG~pnvGKSTL~n~Ltg~~--~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~   98 (396)
T 2ohf_A           21 TSLKIGIVGLPNVGKSTFFNVLTNSQ--ASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVK   98 (396)
T ss_dssp             SCCCEEEECCSSSSHHHHHHHHHC---------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC---
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCC--ccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCccc
Confidence            45689999999999999999999974  36677777776533211                    133599999999854


Q ss_pred             ccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCC
Q 029158           80 AYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKW  115 (198)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~  115 (198)
                      .....      ..+...++.....+|++++|+|+.+
T Consensus        99 ~as~~------~glg~~~l~~ir~aD~Il~VvD~~~  128 (396)
T 2ohf_A           99 GAHNG------QGLGNAFLSHISACDGIFHLTRAFE  128 (396)
T ss_dssp             --------------CCHHHHHHHTSSSEEEEEEC--
T ss_pred             ccchh------hHHHHHHHHHHHhcCeEEEEEecCC
Confidence            32110      1222234444556999999999975

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=99.42  E-value=6.8e-14  Score=109.15  Aligned_cols=89  Identities=17%  Similarity=0.184  Sum_probs=60.7

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEE--Ee-C-----------------CceEEEeCCCCcc
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF--KL-G-----------------TKLCLVDLPGYGF   79 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~--~~-~-----------------~~~~iiDtpG~~~   79 (198)
                      ...+++++|++|+|||||+|.|++. ..+...+++++|.+....  .. +                 ..+.++|+||+..
T Consensus        19 ~g~~vgiVG~pnaGKSTL~n~Ltg~-~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~   97 (392)
T 1ni3_A           19 NNLKTGIVGMPNVGKSTFFRAITKS-VLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK   97 (392)
T ss_dssp             SCCEEEEEECSSSSHHHHHHHHHHS-TTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCC-CcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccccc
Confidence            3568999999999999999999997 444678888877653211  11 1                 3589999999754


Q ss_pred             ccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCC
Q 029158           80 AYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKW  115 (198)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~  115 (198)
                      .....      +.+...++.....+|.+++|+|+..
T Consensus        98 ~~s~~------e~L~~~fl~~ir~~d~il~Vvd~~~  127 (392)
T 1ni3_A           98 GASTG------VGLGNAFLSHVRAVDAIYQVVRAFD  127 (392)
T ss_dssp             CCCSS------SSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             CCcHH------HHHHHHHHHHHHHHHHHHHHHhccc
Confidence            33221      1111233444445899999999865

>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*

Probab=99.30  E-value=1.2e-11  Score=94.29  Aligned_cols=115  Identities=11%  Similarity=0.066  Sum_probs=73.9

Q ss_pred             CCceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCC-------CCCCcC-cH---HHHHHHHh----
Q 029158           66 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTK-------WGVKPR-DH---ELISLMER----  130 (198)
Q Consensus        66 ~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~-------~~~~~~-~~---~~~~~~~~----  130 (198)
                      +..+.+|||+|.          +.+......|+..   ++++++|+|.+       +.-... ..   .+++.+..    
T Consensus       166 ~v~l~iwDtgGQ----------e~~R~~w~~yf~~---~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~  232 (327)
T 3ohm_A          166 SVIFRMVDVGGQ----------RSERRKWIHCFEN---VTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWF  232 (327)
T ss_dssp             TEEEEEEEECCS----------HHHHTTGGGGCSS---CSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGG
T ss_pred             ceeeEEEEcCCc----------hhHHHHHHHHhCC---CCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhcc
Confidence            567899999995          1223333344443   89999999875       211111 12   23333332    


Q ss_pred             hCCcEEEEEeccCCCCc------------------HHHHHHHHHHHHHHHhcc---CCCCCcEEeccCCCCChHHHHHHH
Q 029158          131 SQTKYQVVLTKTDTVFP------------------IDVARRAMQIEESLKANN---SLVQPVMMVSSKSGAGIRSLRTVL  189 (198)
Q Consensus       131 ~~~p~iiv~nK~Dl~~~------------------~~~~~~~~~~~~~~~~~~---~~~~~v~~~Sa~~~~gi~~l~~~i  189 (198)
                      .++|+++++||+|+...                  .+.++..+.+...+....   ...+.++++||+++.|++.+|+.+
T Consensus       233 ~~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v  312 (327)
T 3ohm_A          233 QNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAV  312 (327)
T ss_dssp             TTCEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHH
Confidence            26899999999998642                  234455556555555432   224567899999999999999988


Q ss_pred             HHhh
Q 029158          190 SKIA  193 (198)
Q Consensus       190 ~~~~  193 (198)
                      .+.+
T Consensus       313 ~~~I  316 (327)
T 3ohm_A          313 KDTI  316 (327)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7754

>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}

Probab=99.27  E-value=6.8e-11  Score=90.50  Aligned_cols=115  Identities=11%  Similarity=0.068  Sum_probs=73.9

Q ss_pred             CCceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCC-------CC-CcCcH---HHHHHHHh----
Q 029158           66 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKW-------GV-KPRDH---ELISLMER----  130 (198)
Q Consensus        66 ~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~-------~~-~~~~~---~~~~~~~~----  130 (198)
                      +..+.+|||+|.          +.+......|+..   ++++++|+|.++       .. .....   .++..+..    
T Consensus       160 ~v~l~iwDtaGQ----------e~~R~~w~~yy~~---a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~  226 (340)
T 4fid_A          160 DIPFHLIDVGGQ----------RSERKXWVSFFSD---VDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFL  226 (340)
T ss_dssp             SCEEEEEECCSC----------HHHHHHHHTTSCS---CSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGG
T ss_pred             eeeeccccCCCc----------ccccccHHHHhcc---CCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhcc
Confidence            578999999995          2223444445544   899999999972       11 11112   23333322    


Q ss_pred             hCCcEEEEEeccCCCCc-----------------HHHHHHHHHHHHHH------HhccC--------------CCCCcEE
Q 029158          131 SQTKYQVVLTKTDTVFP-----------------IDVARRAMQIEESL------KANNS--------------LVQPVMM  173 (198)
Q Consensus       131 ~~~p~iiv~nK~Dl~~~-----------------~~~~~~~~~~~~~~------~~~~~--------------~~~~v~~  173 (198)
                      .++|+++++||+|+...                 .+.++..+.+.+.+      .....              ..+.+++
T Consensus       227 ~~~piiLv~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~  306 (340)
T 4fid_A          227 KGAVKLIFLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNP  306 (340)
T ss_dssp             TTSEEEEEEECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEE
T ss_pred             CCCeEEEEEECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEE
Confidence            36899999999998542                 12445556666655      21111              2366899


Q ss_pred             eccCCCCChHHHHHHHHHhh
Q 029158          174 VSSKSGAGIRSLRTVLSKIA  193 (198)
Q Consensus       174 ~Sa~~~~gi~~l~~~i~~~~  193 (198)
                      +||++..+++.+|+.+.+.+
T Consensus       307 TsA~dt~nv~~vF~~v~~~I  326 (340)
T 4fid_A          307 TNATDGSNIKRVFMLAVDVI  326 (340)
T ss_dssp             ECTTCHHHHHHHHHHHHHHH
T ss_pred             EEeeCcHHHHHHHHHHHHHH
Confidence            99999999999999887653

>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}

Probab=99.24  E-value=1.4e-10  Score=82.13  Aligned_cols=175  Identities=11%  Similarity=0.038  Sum_probs=92.9

Q ss_pred             cCCCCCCCCCeEEEEcC-CCCCHHHHHHHHhcCccceeecCCC-----CceeEEEEEEe---------------------
Q 029158           13 SSSFPAPDLPEIAFAGR-SNVGKSSMLNALTRQWGVVRTSDKP-----GLTQTINFFKL---------------------   65 (198)
Q Consensus        13 ~~~~~~~~~~~v~~vG~-~~~GKSsli~~l~~~~~~~~~~~~~-----~~t~~~~~~~~---------------------   65 (198)
                      .+++-+...|++++.|| -..=+.+|+.+|.....+..+..-+     +....+.+...                     
T Consensus         8 ~~s~~~~~~pr~amfgpgle~~~~~lv~~~m~~~~~~p~~g~~~~~~~gigsgv~~~~~~~~~fni~tlys~~~~er~~~   87 (227)
T 3l82_B            8 LHSLIIQNEPRFAMFGPGLEELNTSLVLSLMSSEELCPTAGLPQRQIDGIGSGVNFQLNNQHKFNILILYSTTRKERDRA   87 (227)
T ss_dssp             SSCCCCCCCCEEEEECGGGTSSSSCHHHHHHTCCSSCCEECCGGGCCTTSCCCEEEESSSSCEEEEEECSCC--------
T ss_pred             HHHhccCCCceEEEecCCcccccHHHHHHHhcCCCcccccCCCCCCcCccccceEEEECCeeEEEEEEeccCcHHHhhhh
Confidence            45566788999999997 2344668999998763222221111     11111110000                     


Q ss_pred             -------CCceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHH----HHHHh----
Q 029158           66 -------GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELI----SLMER----  130 (198)
Q Consensus        66 -------~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~----~~~~~----  130 (198)
                             ..++-...+||-.+.-.+..+    ..+++.|+..   .|++|||+|+++.-.....+-+    ..+.+    
T Consensus        88 ~~~~~~~~~k~~~~~~~~~~~~GGQ~kl----RplWr~Yy~~---TdglIfVVDSsD~~R~eak~EL~eL~~mL~ee~~L  160 (227)
T 3l82_B           88 REEHTSAVNKMFSRHNEGDDQQGSRYSV----IPQIQKVCEV---VDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGS  160 (227)
T ss_dssp             ---------------------------------CCHHHHHHH---CSEEEEEEECBTTCCCCHHHHHHHHHHHSCTTSSC
T ss_pred             hhhhhhhhhhcccccCCCccccCcHHHH----HHHHHHHhcC---CCEEEEEeccccHhHHHHHHHHHHHHHHhcchhhh
Confidence                   113445556652221122233    3444555555   8999999999874222222222    22222    


Q ss_pred             hCCcEEEEEecc-CCCCcHHHHHHHHHHHHHHHhccCCCCCcEEeccCCCCChHHHHHHHHHhhcccc
Q 029158          131 SQTKYQVVLTKT-DTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIARFAK  197 (198)
Q Consensus       131 ~~~p~iiv~nK~-Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~~~gi~~l~~~i~~~~~~~r  197 (198)
                      .+.|+++.+||. |+...-...++.+.+.-  ... ...+.+..|||.+|+|+.+-++||.+.+...|
T Consensus       161 ~gapLLVlANKqqDlp~Ams~~EI~e~L~L--~~l-~R~W~Iq~csA~TGeGL~EGLdWL~~~l~~k~  225 (227)
T 3l82_B          161 SGRPLLVLSCISQGDVKRMPCFYLAHELHL--NLL-NHPWLVQDTEAETLTGFLNGIEWILEEVESKR  225 (227)
T ss_dssp             SCSCEEEEEEESSTTSCBCCHHHHHHHTTG--GGG-CSCEEEEEEETTTCTTHHHHHHHHTTTTTTC-
T ss_pred             CCCeEEEEeCCCcCccCCCCHHHHHHHcCC--cCC-CCCEEEEEeECCCCcCHHHHHHHHHHHHHhhc
Confidence            367999999995 78655444444433321  112 24678999999999999999999998876543

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=99.19  E-value=1.9e-11  Score=91.67  Aligned_cols=60  Identities=33%  Similarity=0.631  Sum_probs=41.4

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEeCCceEEEeCCCCccc
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFA   80 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~iiDtpG~~~~   80 (198)
                      ...+++++|.||+|||||+|+|.+. ....+++.+++|+..+....+..+.++||||+...
T Consensus       119 ~~~~v~~vG~~nvGKSsliN~l~~~-~~~~~~~~~g~T~~~~~~~~~~~~~l~DtpG~~~~  178 (282)
T 1puj_A          119 RAIRALIIGIPNVGKSTLINRLAKK-NIAKTGDRPGITTSQQWVKVGKELELLDTPGILWP  178 (282)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHTS-CCC------------CCEEETTTEEEEECCCCCCS
T ss_pred             CCceEEEEecCCCchHHHHHHHhcC-ceeecCCCCCeeeeeEEEEeCCCEEEEECcCcCCC
Confidence            4568999999999999999999997 55678888899988776666788999999998664

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=99.18  E-value=2.3e-11  Score=100.32  Aligned_cols=80  Identities=18%  Similarity=0.253  Sum_probs=49.2

Q ss_pred             CceEEEeCCCCcccc---chhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHhhCCcEEEEEecc
Q 029158           67 TKLCLVDLPGYGFAY---AKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERSQTKYQVVLTKT  142 (198)
Q Consensus        67 ~~~~iiDtpG~~~~~---~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~~~~p~iiv~nK~  142 (198)
                      +++.++|.||++...   ........+..++..|....  ...++.++++..+..... ..+++.+...+.+.|+|+||.
T Consensus       147 p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~--~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlTK~  224 (608)
T 3szr_A          147 PDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQ--ETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKP  224 (608)
T ss_dssp             CCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSS--SCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEECG
T ss_pred             CceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcC--CCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEecch
Confidence            579999999976531   12223445566666665543  245666777665444333 455666666678999999999


Q ss_pred             CCCCcH
Q 029158          143 DTVFPI  148 (198)
Q Consensus       143 Dl~~~~  148 (198)
                      |+....
T Consensus       225 Dlv~~g  230 (608)
T 3szr_A          225 DLVDKG  230 (608)
T ss_dssp             GGSSSS
T ss_pred             hhcCcc
Confidence            998653

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=99.17  E-value=2e-10  Score=86.19  Aligned_cols=93  Identities=14%  Similarity=0.179  Sum_probs=68.2

Q ss_pred             HHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcE
Q 029158           93 LVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVM  172 (198)
Q Consensus        93 ~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~  172 (198)
                      ..+++......+|+|+.|+|++.+.......+-+.+  .++|.++|+||+|+.+....+...+.++       ..+.+++
T Consensus        13 a~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l--~~kp~ilVlNK~DL~~~~~~~~~~~~~~-------~~g~~~i   83 (282)
T 1puj_A           13 ARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL--KNKPRIMLLNKADKADAAVTQQWKEHFE-------NQGIRSL   83 (282)
T ss_dssp             HHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC--SSSCEEEEEECGGGSCHHHHHHHHHHHH-------TTTCCEE
T ss_pred             HHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH--CCCCEEEEEECcccCCHHHHHHHHHHHH-------hcCCcEE
Confidence            345666666779999999999987666654444443  4799999999999998544333333222       1246899


Q ss_pred             EeccCCCCChHHHHHHHHHhhc
Q 029158          173 MVSSKSGAGIRSLRTVLSKIAR  194 (198)
Q Consensus       173 ~~Sa~~~~gi~~l~~~i~~~~~  194 (198)
                      ++||+++.|++++++.+.+.+.
T Consensus        84 ~iSA~~~~gi~~L~~~i~~~l~  105 (282)
T 1puj_A           84 SINSVNGQGLNQIVPASKEILQ  105 (282)
T ss_dssp             ECCTTTCTTGGGHHHHHHHHHH
T ss_pred             EEECCCcccHHHHHHHHHHHHH
Confidence            9999999999999998887654

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=99.08  E-value=3.4e-09  Score=83.73  Aligned_cols=146  Identities=19%  Similarity=0.236  Sum_probs=80.8

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhc-----CccceeecCCCC-c-----------eeEEEEEE------------------
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTR-----QWGVVRTSDKPG-L-----------TQTINFFK------------------   64 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~-----~~~~~~~~~~~~-~-----------t~~~~~~~------------------   64 (198)
                      ....|+++|++|+||||++..|..     ..++..+...+. .           .....++.                  
T Consensus        99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a  178 (443)
T 3dm5_A           99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF  178 (443)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence            356799999999999999998873     112222211110 0           00000110                  


Q ss_pred             --eCCceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEecc
Q 029158           65 --LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKT  142 (198)
Q Consensus        65 --~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~  142 (198)
                        .++++.++||||.....  ..   ...+ +... .....+|.+++|+|+..+  .......+.+.+.-.+..+|+||+
T Consensus       179 ~~~~~DvVIIDTaGrl~~d--~~---lm~e-l~~i-~~~~~pd~vlLVvDA~~g--q~a~~~a~~f~~~~~i~gVIlTKl  249 (443)
T 3dm5_A          179 KSKGVDIIIVDTAGRHKED--KA---LIEE-MKQI-SNVIHPHEVILVIDGTIG--QQAYNQALAFKEATPIGSIIVTKL  249 (443)
T ss_dssp             HHTTCSEEEEECCCCSSCC--HH---HHHH-HHHH-HHHHCCSEEEEEEEGGGG--GGHHHHHHHHHHSCTTEEEEEECC
T ss_pred             HhCCCCEEEEECCCcccch--HH---HHHH-HHHH-HHhhcCceEEEEEeCCCc--hhHHHHHHHHHhhCCCeEEEEECC
Confidence              23789999999964321  11   1111 1111 112237899999999863  223344444444344567999999


Q ss_pred             CCCCcHHHHHHHHHHHHHHHhccCCCCCcEEeccCCCCChHHH
Q 029158          143 DTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSL  185 (198)
Q Consensus       143 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~~~gi~~l  185 (198)
                      |........  .    ....   ..+.|+.+++.  |+++++|
T Consensus       250 D~~~~gG~~--l----s~~~---~~g~PI~fig~--Ge~vddL  281 (443)
T 3dm5_A          250 DGSAKGGGA--L----SAVA---ATGAPIKFIGT--GEKIDDI  281 (443)
T ss_dssp             SSCSSHHHH--H----HHHH---TTCCCEEEEEC--SSSTTCE
T ss_pred             CCcccccHH--H----HHHH---HHCCCEEEEEc--CCChHHh
Confidence            998654321  1    1111   12578888875  6666543

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=99.08  E-value=6.5e-11  Score=87.90  Aligned_cols=58  Identities=28%  Similarity=0.561  Sum_probs=41.6

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEeCCceEEEeCCCCccc
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFA   80 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~iiDtpG~~~~   80 (198)
                      .+++++|.+|+|||||+|+|++. .....++.+++|........+.++.+|||||+...
T Consensus       100 ~~v~~vG~~~vGKSslin~l~~~-~~~~~~~~~g~T~~~~~~~~~~~~~l~DtpG~~~~  157 (262)
T 3cnl_A          100 ARVLIVGVPNTGKSTIINKLKGK-RASSVGAQPGITKGIQWFSLENGVKILDTPGILYK  157 (262)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTT-CC----------CCSCEEECTTSCEEESSCEECCC
T ss_pred             hheEEeCCCCCCHHHHHHHHhcc-cccccCCCCCCccceEEEEeCCCEEEEECCCcccC
Confidence            68999999999999999999987 44566777888887766666788999999998764

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*

Probab=99.05  E-value=2.5e-10  Score=93.30  Aligned_cols=99  Identities=18%  Similarity=0.222  Sum_probs=58.1

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCC----CceeEEEEE------EeCCceEEEeCCCCccccchhHHHH
Q 029158           19 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKP----GLTQTINFF------KLGTKLCLVDLPGYGFAYAKEEVKD   88 (198)
Q Consensus        19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~----~~t~~~~~~------~~~~~~~iiDtpG~~~~~~~~~~~~   88 (198)
                      ....+|+++|.||+|||||+|+|++.. ...  +.+    ++|.....+      ..+..+.++||||+.+........+
T Consensus        36 ~~~~~VaivG~pnvGKStLiN~L~g~~-~~~--~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~~~~~~~~~~  112 (592)
T 1f5n_A           36 QPMVVVAIVGLYRTGKSYLMNKLAGKK-KGF--SLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDVEKGDNQND  112 (592)
T ss_dssp             SBEEEEEEEEBTTSSHHHHHHHHTTCS-SCS--CCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCGGGCCCTTH
T ss_pred             CCCcEEEEECCCCCCHHHHHHhHcCCC-Ccc--ccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCcccccchhHH
Confidence            456789999999999999999999974 221  333    334434332      1356899999999976432111111


Q ss_pred             HHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHH
Q 029158           89 AWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISL  127 (198)
Q Consensus        89 ~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~  127 (198)
                      .....+...+     ++  ++|+|+..++...+...+..
T Consensus       113 ~~~fala~ll-----ss--~lv~n~~~~i~~~dl~~l~~  144 (592)
T 1f5n_A          113 SWIFALAVLL-----SS--TFVYNSIGTINQQAMDQLYY  144 (592)
T ss_dssp             HHHHHHHHHH-----CS--EEEEEEESCSSHHHHHTTHH
T ss_pred             HHHHHHHHHh-----cC--eEEEECCCCccHHHHHHHHH
Confidence            1111111111     22  56677776677666654443

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=99.05  E-value=4.8e-10  Score=88.77  Aligned_cols=159  Identities=18%  Similarity=0.171  Sum_probs=85.1

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCc-----cceeecCC------------------------CCceeEE-EE-E-----E
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQW-----GVVRTSDK------------------------PGLTQTI-NF-F-----K   64 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~~-----~~~~~~~~------------------------~~~t~~~-~~-~-----~   64 (198)
                      ...|+++|++|+||||+++.|....     ++..+...                        .+++.+. .. .     .
T Consensus        99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~~  178 (432)
T 2v3c_C           99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKF  178 (432)
T ss_dssp             CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHTT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHHh
Confidence            4579999999999999999988631     12211111                        0011110 00 0     0


Q ss_pred             eCCceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCC-c-EEEEEecc
Q 029158           65 LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQT-K-YQVVLTKT  142 (198)
Q Consensus        65 ~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~-p-~iiv~nK~  142 (198)
                      .+.++.++||||....   +  ...+..+ .. +.....+|.+++|+|+..+.  ......+.+.. .. | ..+|+||+
T Consensus       179 ~~~D~vIIDT~G~~~~---~--~~l~~~l-~~-i~~~~~~d~vllVvda~~g~--~~~~~~~~~~~-~~~~i~gvVlnK~  248 (432)
T 2v3c_C          179 KKADVLIIDTAGRHKE---E--KGLLEEM-KQ-IKEITNPDEIILVIDGTIGQ--QAGIQAKAFKE-AVGEIGSIIVTKL  248 (432)
T ss_dssp             SSCSEEEEECCCSCSS---H--HHHHHHH-HH-TTSSSCCSEEEEEEEGGGGG--GHHHHHHHHHT-TSCSCEEEEEECS
T ss_pred             hCCCEEEEcCCCCccc---c--HHHHHHH-HH-HHHHhcCcceeEEeeccccH--HHHHHHHHHhh-cccCCeEEEEeCC
Confidence            3578999999997432   1  1111221 11 23333589999999997652  22222333332 35 6 78999999


Q ss_pred             CCCCcHHHHHHHHHHHHHHHh------------ccCCCCCcEEeccCCCCC-hHHHHHHHHHh
Q 029158          143 DTVFPIDVARRAMQIEESLKA------------NNSLVQPVMMVSSKSGAG-IRSLRTVLSKI  192 (198)
Q Consensus       143 Dl~~~~~~~~~~~~~~~~~~~------------~~~~~~~v~~~Sa~~~~g-i~~l~~~i~~~  192 (198)
                      |.......  ... +......            ......|..++|+..|.| +.+|++.+.+.
T Consensus       249 D~~~~~g~--~l~-~~~~~~~pi~~ig~Ge~~~dl~~f~~~~~~s~l~g~gdi~~L~e~~~~~  308 (432)
T 2v3c_C          249 DGSAKGGG--ALS-AVAETKAPIKFIGIGEGIDDLEPFDPKKFISRLLGMGDLESLLEKAEDM  308 (432)
T ss_dssp             SSCSTTHH--HHH-HHHHSSCCEEEECCSSSSSSCCBCCHHHHHHHHTCSSCSSTTSSTTTSC
T ss_pred             CCccchHH--HHH-HHHHHCCCEEEeecCccccccccCCHHHHHHHHcCCCcHHHHHHHHHHH
Confidence            98754321  111 2221100            000122344667777777 77666665444

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...

Probab=99.04  E-value=7.4e-11  Score=91.09  Aligned_cols=115  Identities=10%  Similarity=0.058  Sum_probs=73.4

Q ss_pred             CCceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC--------cCcH---HHHHHHHh----
Q 029158           66 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVK--------PRDH---ELISLMER----  130 (198)
Q Consensus        66 ~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~--------~~~~---~~~~~~~~----  130 (198)
                      +..+.+|||+|...-          ......|+.   .++++++|+|.++--+        ....   .+++.+..    
T Consensus       192 ~~~l~iwDt~GQe~~----------r~~w~~yf~---~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~  258 (353)
T 1cip_A          192 DLHFKMFDVGGQRSE----------RKKWIHCFE---GVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWF  258 (353)
T ss_dssp             TEEEEEEEECCSGGG----------GGGGGGGCT---TCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGG
T ss_pred             CeeEEEEeCCCchhh----------hHHHHHHHh---cCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccc
Confidence            567999999996321          222233443   3899999999986211        1112   23333332    


Q ss_pred             hCCcEEEEEeccCCCCc-----------------HHHHHHHHHHHHHHHhcc----CCCCCcEEeccCCCCChHHHHHHH
Q 029158          131 SQTKYQVVLTKTDTVFP-----------------IDVARRAMQIEESLKANN----SLVQPVMMVSSKSGAGIRSLRTVL  189 (198)
Q Consensus       131 ~~~p~iiv~nK~Dl~~~-----------------~~~~~~~~~~~~~~~~~~----~~~~~v~~~Sa~~~~gi~~l~~~i  189 (198)
                      .+.|+|+++||+|+...                 ...++....+...+....    ...+.++++||++++|++++++++
T Consensus       259 ~~~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v  338 (353)
T 1cip_A          259 TDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAV  338 (353)
T ss_dssp             TTSEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHH
T ss_pred             cCCcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHH
Confidence            36899999999998521                 123344444444433331    235678999999999999999998


Q ss_pred             HHhh
Q 029158          190 SKIA  193 (198)
Q Consensus       190 ~~~~  193 (198)
                      .+.+
T Consensus       339 ~~~i  342 (353)
T 1cip_A          339 TDVI  342 (353)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8765

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=99.03  E-value=1.4e-09  Score=82.30  Aligned_cols=85  Identities=22%  Similarity=0.337  Sum_probs=58.8

Q ss_pred             cccceEEEEEeCCCCCC-cCc-HHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEeccCCC
Q 029158          102 VSLKRVCLLIDTKWGVK-PRD-HELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSG  179 (198)
Q Consensus       102 ~~~d~vi~v~d~~~~~~-~~~-~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~~  179 (198)
                      ..+|++++|+|+++... ... ..++..+...++|+++|+||+|+.+....++    .++........ .+++++||++|
T Consensus        83 ~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~~~~piilv~NK~DL~~~~~v~~----~~~~~~~~~~~-~~~~~~SAktg  157 (301)
T 1u0l_A           83 ANVDQVILVVTVKMPETSTYIIDKFLVLAEKNELETVMVINKMDLYDEDDLRK----VRELEEIYSGL-YPIVKTSAKTG  157 (301)
T ss_dssp             ESCCEEEEEECSSTTCCCHHHHHHHHHHHHHTTCEEEEEECCGGGCCHHHHHH----HHHHHHHHTTT-SCEEECCTTTC
T ss_pred             ccCCEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEeHHHcCCchhHHH----HHHHHHHHhhh-CcEEEEECCCC
Confidence            44999999999987432 111 3345555556899999999999987554321    22222222222 78999999999


Q ss_pred             CChHHHHHHHHH
Q 029158          180 AGIRSLRTVLSK  191 (198)
Q Consensus       180 ~gi~~l~~~i~~  191 (198)
                      +|++++++++..
T Consensus       158 ~gv~~lf~~l~g  169 (301)
T 1u0l_A          158 MGIEELKEYLKG  169 (301)
T ss_dssp             TTHHHHHHHHSS
T ss_pred             cCHHHHHHHhcC
Confidence            999999998754

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=99.01  E-value=2.3e-10  Score=88.65  Aligned_cols=115  Identities=13%  Similarity=0.055  Sum_probs=70.3

Q ss_pred             CCceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCC--------CcCc---HHHHHHHHh----
Q 029158           66 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGV--------KPRD---HELISLMER----  130 (198)
Q Consensus        66 ~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~--------~~~~---~~~~~~~~~----  130 (198)
                      +..+.+|||+|...          +......++.   .+++++||+|.++--        ....   ..++..+..    
T Consensus       200 ~~~l~i~Dt~Gq~~----------~r~~w~~~f~---~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~  266 (362)
T 1zcb_A          200 NVPFKMVDVGGQRS----------ERKRWFECFD---SVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVF  266 (362)
T ss_dssp             TEEEEEEEECC-----------------CTTSCT---TCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGG
T ss_pred             CeEEEEEeccchhh----------hhhhHHHHhC---CCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhh
Confidence            56799999999521          1222233333   489999999998611        1111   223333332    


Q ss_pred             hCCcEEEEEeccCCCCc------------------HHHHHHHHHHHHHHHhcc----CCCCCcEEeccCCCCChHHHHHH
Q 029158          131 SQTKYQVVLTKTDTVFP------------------IDVARRAMQIEESLKANN----SLVQPVMMVSSKSGAGIRSLRTV  188 (198)
Q Consensus       131 ~~~p~iiv~nK~Dl~~~------------------~~~~~~~~~~~~~~~~~~----~~~~~v~~~Sa~~~~gi~~l~~~  188 (198)
                      .+.|+|+++||+|+...                  ...++....+...+....    ...+.++++||++++|+++++++
T Consensus       267 ~~~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~  346 (362)
T 1zcb_A          267 SNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRD  346 (362)
T ss_dssp             TTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHH
T ss_pred             CCCCEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHH
Confidence            26899999999998521                  223344444444433321    23467899999999999999999


Q ss_pred             HHHhh
Q 029158          189 LSKIA  193 (198)
Q Consensus       189 i~~~~  193 (198)
                      +.+.+
T Consensus       347 v~~~i  351 (362)
T 1zcb_A          347 VKDTI  351 (362)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            88754

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=99.00  E-value=1.3e-09  Score=82.53  Aligned_cols=88  Identities=18%  Similarity=0.165  Sum_probs=60.9

Q ss_pred             cccccceEEEEEeCCCCCCcCc--HHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEeccC
Q 029158          100 TRVSLKRVCLLIDTKWGVKPRD--HELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSK  177 (198)
Q Consensus       100 ~~~~~d~vi~v~d~~~~~~~~~--~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~  177 (198)
                      ....+|.+++|+|++++.....  ..++..+...++|+++|+||+|+.+...... .+...+.....   +.+++++||+
T Consensus        76 ~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~~~~~~ilV~NK~DL~~~~~v~~-~~~~~~~~~~~---g~~~~~~SA~  151 (302)
T 2yv5_A           76 KVANVDRVIIVETLKMPEFNNYLLDNMLVVYEYFKVEPVIVFNKIDLLNEEEKKE-LERWISIYRDA---GYDVLKVSAK  151 (302)
T ss_dssp             EEESCCEEEEEECSTTTTCCHHHHHHHHHHHHHTTCEEEEEECCGGGCCHHHHHH-HHHHHHHHHHT---TCEEEECCTT
T ss_pred             HHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHhCCCCEEEEEEcccCCCccccHH-HHHHHHHHHHC---CCeEEEEECC
Confidence            3455999999999987432222  2455566667899999999999987643111 12222222222   4689999999


Q ss_pred             CCCChHHHHHHHHH
Q 029158          178 SGAGIRSLRTVLSK  191 (198)
Q Consensus       178 ~~~gi~~l~~~i~~  191 (198)
                      +|+|+++|++.+..
T Consensus       152 ~g~gi~~L~~~l~G  165 (302)
T 2yv5_A          152 TGEGIDELVDYLEG  165 (302)
T ss_dssp             TCTTHHHHHHHTTT
T ss_pred             CCCCHHHHHhhccC
Confidence            99999999988754

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=98.97  E-value=1.3e-08  Score=80.40  Aligned_cols=146  Identities=16%  Similarity=0.157  Sum_probs=79.7

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcC-----ccceeecC--CCCc----------eeEEEEE-------------------
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQ-----WGVVRTSD--KPGL----------TQTINFF-------------------   63 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~-----~~~~~~~~--~~~~----------t~~~~~~-------------------   63 (198)
                      ....|+++|++|+||||++..|...     ..+.....  +...          .....++                   
T Consensus        96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a  175 (433)
T 3kl4_A           96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF  175 (433)
T ss_dssp             SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence            3457899999999999999988731     11111110  0000          0000000                   


Q ss_pred             -EeCCceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEecc
Q 029158           64 -KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKT  142 (198)
Q Consensus        64 -~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~  142 (198)
                       ..++.+.++||||................    .... ..++.+++|+|+..+  .......+.+.+.-.+..+|+||+
T Consensus       176 ~~~~~DvvIIDTaGr~~~~~d~~lm~el~~----i~~~-~~pd~vlLVlDa~~g--q~a~~~a~~f~~~~~~~gVIlTKl  248 (433)
T 3kl4_A          176 VKNKMDIIIVDTAGRHGYGEETKLLEEMKE----MYDV-LKPDDVILVIDASIG--QKAYDLASRFHQASPIGSVIITKM  248 (433)
T ss_dssp             TTTTCSEEEEEECCCSSSCCTTHHHHHHHH----HHHH-HCCSEEEEEEEGGGG--GGGHHHHHHHHHHCSSEEEEEECG
T ss_pred             HhcCCCEEEEECCCCccccCCHHHHHHHHH----HHHh-hCCcceEEEEeCccc--hHHHHHHHHHhcccCCcEEEEecc
Confidence             01468999999995331011111111111    1111 136889999999864  333445555554446678999999


Q ss_pred             CCCCcHHHHHHHHHHHHHHHhccCCCCCcEEeccCCCCChH
Q 029158          143 DTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIR  183 (198)
Q Consensus       143 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~~~gi~  183 (198)
                      |.......  ........       +.|+.+++.  |++++
T Consensus       249 D~~a~~G~--als~~~~~-------g~Pi~fig~--Ge~v~  278 (433)
T 3kl4_A          249 DGTAKGGG--ALSAVVAT-------GATIKFIGT--GEKID  278 (433)
T ss_dssp             GGCSCHHH--HHHHHHHH-------TCEEEEEEC--CSSSS
T ss_pred             cccccchH--HHHHHHHH-------CCCEEEEEC--CCChH
Confidence            98764432  22222211       478888875  66664

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=98.97  E-value=2e-09  Score=83.76  Aligned_cols=101  Identities=11%  Similarity=-0.002  Sum_probs=64.6

Q ss_pred             HHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHH-HHHHHHHHHHHHHhccCCC
Q 029158           90 WEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPID-VARRAMQIEESLKANNSLV  168 (198)
Q Consensus        90 ~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~  168 (198)
                      +...+.++...   ++++++|+|+++.......++.+.+.  +.|+++|+||+|+.+... .+...+.+++.+.......
T Consensus        61 f~~~L~~~~~~---~~lil~VvD~~d~~~s~~~~l~~~l~--~~piilV~NK~DLl~~~~~~~~~~~~l~~~~~~~g~~~  135 (369)
T 3ec1_A           61 FLSMLHRIGES---KALVVNIVDIFDFNGSFIPGLPRFAA--DNPILLVGNKADLLPRSVKYPKLLRWMRRMAEELGLCP  135 (369)
T ss_dssp             HHHHHHHHHHH---CCEEEEEEETTCSGGGCCSSHHHHCT--TSCEEEEEECGGGSCTTCCHHHHHHHHHHHHHTTTCCC
T ss_pred             HHHHHHHhhcc---CcEEEEEEECCCCCCchhhHHHHHhC--CCCEEEEEEChhcCCCccCHHHHHHHHHHHHHHcCCCc
Confidence            34455555443   78999999998743222222222222  789999999999986532 2233334443333332212


Q ss_pred             CCcEEeccCCCCChHHHHHHHHHhhcc
Q 029158          169 QPVMMVSSKSGAGIRSLRTVLSKIARF  195 (198)
Q Consensus       169 ~~v~~~Sa~~~~gi~~l~~~i~~~~~~  195 (198)
                      .+++++||++|+|++++++.+.+....
T Consensus       136 ~~v~~iSA~~g~gi~~L~~~I~~~~~~  162 (369)
T 3ec1_A          136 VDVCLVSAAKGIGMAKVMEAINRYREG  162 (369)
T ss_dssp             SEEEECBTTTTBTHHHHHHHHHHHHTT
T ss_pred             ccEEEEECCCCCCHHHHHHHHHhhccc
Confidence            468999999999999999999876543

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=98.97  E-value=1.8e-09  Score=84.00  Aligned_cols=100  Identities=16%  Similarity=0.114  Sum_probs=64.5

Q ss_pred             HHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHh--hCCcEEEEEeccCCCCcHH-HHHHHHHHHHHHHhc
Q 029158           88 DAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMER--SQTKYQVVLTKTDTVFPID-VARRAMQIEESLKAN  164 (198)
Q Consensus        88 ~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~-~~~~~~~~~~~~~~~  164 (198)
                      +.+..+++++...   ++++++|+|+++.    +..+...+.+  .+.|+++|+||+|+.+... .+...+.++......
T Consensus        57 e~f~~~l~~i~~~---~~~il~VvD~~d~----~~~~~~~l~~~~~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~~~~~  129 (368)
T 3h2y_A           57 DDFLRILNGIGKS---DALVVKIVDIFDF----NGSWLPGLHRFVGNNKVLLVGNKADLIPKSVKHDKVKHWMRYSAKQL  129 (368)
T ss_dssp             HHHHHHHHHHHHS---CCEEEEEEETTSH----HHHCCTTHHHHSSSSCEEEEEECGGGSCTTSCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhcc---CcEEEEEEECCCC----cccHHHHHHHHhCCCcEEEEEEChhcCCcccCHHHHHHHHHHHHHHc
Confidence            4445566666554   7899999999762    1222222322  2789999999999976532 222333333333332


Q ss_pred             cCCCCCcEEeccCCCCChHHHHHHHHHhhc
Q 029158          165 NSLVQPVMMVSSKSGAGIRSLRTVLSKIAR  194 (198)
Q Consensus       165 ~~~~~~v~~~Sa~~~~gi~~l~~~i~~~~~  194 (198)
                      .....+++.+||++|+|+++++++|.+...
T Consensus       130 g~~~~~v~~iSA~~g~gi~~L~~~l~~~~~  159 (368)
T 3h2y_A          130 GLKPEDVFLISAAKGQGIAELADAIEYYRG  159 (368)
T ss_dssp             TCCCSEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred             CCCcccEEEEeCCCCcCHHHHHhhhhhhcc
Confidence            221237899999999999999999987543

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}

Probab=98.87  E-value=1.5e-09  Score=83.86  Aligned_cols=115  Identities=12%  Similarity=0.104  Sum_probs=68.1

Q ss_pred             CCceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCC-------CC-CcCcH---HHHHHHHh----
Q 029158           66 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKW-------GV-KPRDH---ELISLMER----  130 (198)
Q Consensus        66 ~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~-------~~-~~~~~---~~~~~~~~----  130 (198)
                      ...+.+|||+|...-          ..+...|+.   .++++++|+|.++       .. .....   .+++.+..    
T Consensus       182 ~v~l~iwDtaGQe~~----------r~~~~~y~~---~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~  248 (354)
T 2xtz_A          182 GEVYRLFDVGGQRNE----------RRKWIHLFE---GVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCF  248 (354)
T ss_dssp             --EEEEEEECCSTTG----------GGGTGGGCT---TEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGG
T ss_pred             ceeeEEEECCCchhh----------hHHHHHHhC---CCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhcccc
Confidence            357999999996321          222333443   3899999999862       11 11112   23333332    


Q ss_pred             hCCcEEEEEeccCCCCcH-----------------------HHHHHHHHHHHHHHhc----c-----CCCCCcEEeccCC
Q 029158          131 SQTKYQVVLTKTDTVFPI-----------------------DVARRAMQIEESLKAN----N-----SLVQPVMMVSSKS  178 (198)
Q Consensus       131 ~~~p~iiv~nK~Dl~~~~-----------------------~~~~~~~~~~~~~~~~----~-----~~~~~v~~~Sa~~  178 (198)
                      .+.|+++|+||+|+....                       +.++..+.+.+.+...    .     .....++++||++
T Consensus       249 ~~~piiLvgNK~DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d  328 (354)
T 2xtz_A          249 EKTSFMLFLNKFDIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALD  328 (354)
T ss_dssp             SSCEEEEEEECHHHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTC
T ss_pred             CCCeEEEEEECcchhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeec
Confidence            268999999999984211                       1223333333332211    0     1234468999999


Q ss_pred             CCChHHHHHHHHHhh
Q 029158          179 GAGIRSLRTVLSKIA  193 (198)
Q Consensus       179 ~~gi~~l~~~i~~~~  193 (198)
                      ++|++++++++.+.+
T Consensus       329 ~~nV~~vF~~v~~~I  343 (354)
T 2xtz_A          329 QKLVKKTFKLVDETL  343 (354)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHH
Confidence            999999999987754

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=98.83  E-value=1e-08  Score=76.15  Aligned_cols=99  Identities=6%  Similarity=-0.039  Sum_probs=64.4

Q ss_pred             HHHHHHhcccccceEEEEEeCCCCCCcCcHHHH----HHHHh----hCCcEEEEEec-cCCCCcHHHHHHHHHHHHHHHh
Q 029158           93 LVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELI----SLMER----SQTKYQVVLTK-TDTVFPIDVARRAMQIEESLKA  163 (198)
Q Consensus        93 ~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~----~~~~~----~~~p~iiv~nK-~Dl~~~~~~~~~~~~~~~~~~~  163 (198)
                      +.+.|+..   .|++|||+|+++.......+-+    ..+.+    .+.|+++.+|| .|+...-...++.+.+.-  ..
T Consensus       203 lWr~Yy~~---tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams~~EI~e~L~L--~~  277 (312)
T 3l2o_B          203 QIQKVCEV---VDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHELHL--NL  277 (312)
T ss_dssp             HHHHHHHH---CSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCCHHHHHHHTTG--GG
T ss_pred             HHHHHhcC---CCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCCHHHHHHHcCC--cc
Confidence            34445544   8999999999874332222212    22211    47899999997 688765444444433331  11


Q ss_pred             ccCCCCCcEEeccCCCCChHHHHHHHHHhhcccc
Q 029158          164 NNSLVQPVMMVSSKSGAGIRSLRTVLSKIARFAK  197 (198)
Q Consensus       164 ~~~~~~~v~~~Sa~~~~gi~~l~~~i~~~~~~~r  197 (198)
                      . .....+..+||.+|+|+.+-++|+.+.+...|
T Consensus       278 l-~r~W~Iq~csA~tGeGL~EGldWL~~~l~~k~  310 (312)
T 3l2o_B          278 L-NHPWLVQDTEAETLTGFLNGIEWILEEVESKR  310 (312)
T ss_dssp             G-CSCEEEEEEETTTCTTHHHHHHHHHHHSCC--
T ss_pred             C-CCcEEEEecccCCCcCHHHHHHHHHHHHHhhc
Confidence            1 23677999999999999999999999886544

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.82  E-value=3e-09  Score=78.96  Aligned_cols=85  Identities=9%  Similarity=0.007  Sum_probs=59.8

Q ss_pred             HHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEec
Q 029158           96 EYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVS  175 (198)
Q Consensus        96 ~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~S  175 (198)
                      ++......+|+++.|+|++.+.......+- .+   ++|.++|+||+|+.+....+...+.+++       .+.++ ++|
T Consensus        14 ~~~~~l~~~D~vl~VvDar~P~~~~~~~l~-ll---~k~~iivlNK~DL~~~~~~~~~~~~~~~-------~g~~v-~iS   81 (262)
T 3cnl_A           14 QIKDLLRLVNTVVEVRDARAPFATSAYGVD-FS---RKETIILLNKVDIADEKTTKKWVEFFKK-------QGKRV-ITT   81 (262)
T ss_dssp             HHHHHHTTCSEEEEEEETTSTTTTSCTTSC-CT---TSEEEEEEECGGGSCHHHHHHHHHHHHH-------TTCCE-EEC
T ss_pred             HHHHHHhhCCEEEEEeeCCCCCcCcChHHH-hc---CCCcEEEEECccCCCHHHHHHHHHHHHH-------cCCeE-EEE
Confidence            444445569999999999986555432211 22   7999999999999986544333333322       14577 999


Q ss_pred             cCCCCChHHHHHHHHHh
Q 029158          176 SKSGAGIRSLRTVLSKI  192 (198)
Q Consensus       176 a~~~~gi~~l~~~i~~~  192 (198)
                      |+++.|+++|++++...
T Consensus        82 a~~~~gi~~L~~~l~~~   98 (262)
T 3cnl_A           82 HKGEPRKVLLKKLSFDR   98 (262)
T ss_dssp             CTTSCHHHHHHHHCCCT
T ss_pred             CCCCcCHHHHHHHHHHh
Confidence            99999999999887654

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=98.78  E-value=8e-09  Score=80.80  Aligned_cols=115  Identities=11%  Similarity=0.063  Sum_probs=69.6

Q ss_pred             CCceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCC-------CC-CcCc---HHHHHHHHh----
Q 029158           66 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKW-------GV-KPRD---HELISLMER----  130 (198)
Q Consensus        66 ~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~-------~~-~~~~---~~~~~~~~~----  130 (198)
                      +..+.+|||+|...-          ......|+..   ++++++|+|.++       +. ....   ..+++.+..    
T Consensus       216 ~v~l~iwDtaGQe~~----------r~~w~~yf~~---a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~  282 (402)
T 1azs_C          216 KVNFHMFDVGGQRDE----------RRKWIQCFND---VTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWL  282 (402)
T ss_dssp             TEEEEEEEECCSGGG----------GGGGGGGTTT---CCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTC
T ss_pred             Cccceecccchhhhh----------hhhhHhhccC---CCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccC
Confidence            567899999996221          2223344443   899999999986       10 1111   223344432    


Q ss_pred             hCCcEEEEEeccCCCCcH--------------------------------HHHHHHHHHHHHHHhc------cCCCCCcE
Q 029158          131 SQTKYQVVLTKTDTVFPI--------------------------------DVARRAMQIEESLKAN------NSLVQPVM  172 (198)
Q Consensus       131 ~~~p~iiv~nK~Dl~~~~--------------------------------~~~~~~~~~~~~~~~~------~~~~~~v~  172 (198)
                      .+.|+++|+||+|+....                                ..++....+.+.+...      ....+.++
T Consensus       283 ~~~piiLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~  362 (402)
T 1azs_C          283 RTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPH  362 (402)
T ss_dssp             SSCCEEEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEE
T ss_pred             CCCeEEEEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEE
Confidence            258999999999984321                                1122223332222221      11235578


Q ss_pred             EeccCCCCChHHHHHHHHHhh
Q 029158          173 MVSSKSGAGIRSLRTVLSKIA  193 (198)
Q Consensus       173 ~~Sa~~~~gi~~l~~~i~~~~  193 (198)
                      ++||++++|++++|+++.+.+
T Consensus       363 ~TSA~d~~nV~~vF~~v~~~I  383 (402)
T 1azs_C          363 FTCAVDTENIRRVFNDCRDII  383 (402)
T ss_dssp             ECCTTCHHHHHHHHHHHHHHH
T ss_pred             EEEeecCcCHHHHHHHHHHHH
Confidence            999999999999999987754

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=98.75  E-value=1.1e-07  Score=71.69  Aligned_cols=146  Identities=18%  Similarity=0.196  Sum_probs=77.9

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC-----ccceeecCCC--C---------------------ceeE--------EEEEE
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQ-----WGVVRTSDKP--G---------------------LTQT--------INFFK   64 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~-----~~~~~~~~~~--~---------------------~t~~--------~~~~~   64 (198)
                      ...++++|++|+||||++..|...     ..+.......  +                     ...+        .....
T Consensus        98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~  177 (297)
T 1j8m_F           98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL  177 (297)
T ss_dssp             SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence            456889999999999999988732     1111111110  0                     0000        00001


Q ss_pred             -eCCceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCc-EEEEEecc
Q 029158           65 -LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKT  142 (198)
Q Consensus        65 -~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~  142 (198)
                       .++.+.++||||.......+.   ...+ +..+ .....+|.+++|+|+..+  .......+.+.+ ..+ ..+|+||+
T Consensus       178 ~~~~D~ViIDTpg~~~~~~~~~---l~~e-l~~i-~~~~~~d~vllVvda~~g--~~~~~~~~~~~~-~~~i~gvVlnk~  249 (297)
T 1j8m_F          178 SEKMEIIIVDTAGRHGYGEEAA---LLEE-MKNI-YEAIKPDEVTLVIDASIG--QKAYDLASKFNQ-ASKIGTIIITKM  249 (297)
T ss_dssp             HTTCSEEEEECCCSCCTTCHHH---HHHH-HHHH-HHHHCCSEEEEEEEGGGG--GGHHHHHHHHHH-TCTTEEEEEECG
T ss_pred             hCCCCEEEEeCCCCcccccHHH---HHHH-HHHH-HHHhcCCEEEEEeeCCch--HHHHHHHHHHHh-hCCCCEEEEeCC
Confidence             356899999999654100011   1111 1111 112247899999999753  233333444443 466 67899999


Q ss_pred             CCCCcHHHHHHHHHHHHHHHhccCCCCCcEEeccCCCCChHHH
Q 029158          143 DTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSL  185 (198)
Q Consensus       143 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~~~gi~~l  185 (198)
                      |.......  ..    +...   ..+.|+.+++  .|++++++
T Consensus       250 D~~~~~g~--~~----~~~~---~~~~pi~~i~--~Ge~v~dl  281 (297)
T 1j8m_F          250 DGTAKGGG--AL----SAVA---ATGATIKFIG--TGEKIDEL  281 (297)
T ss_dssp             GGCTTHHH--HH----HHHH---TTTCCEEEEE--CSSSTTCE
T ss_pred             CCCcchHH--HH----HHHH---HHCcCEEEEe--CCCChhhc
Confidence            98754321  11    1111   1247888876  57776654

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=98.63  E-value=4e-07  Score=69.59  Aligned_cols=146  Identities=18%  Similarity=0.195  Sum_probs=76.6

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCc-----cceeecCCC---Cc-------e--eEEEEE-------------------
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQW-----GVVRTSDKP---GL-------T--QTINFF-------------------   63 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~~-----~~~~~~~~~---~~-------t--~~~~~~-------------------   63 (198)
                      ....++++|++||||||+++.|.+..     .+...+...   ..       .  ..+.+.                   
T Consensus       128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~~  207 (328)
T 3e70_C          128 KPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQHA  207 (328)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHHH
Confidence            34578999999999999999988531     111110000   00       0  000010                   


Q ss_pred             -EeCCceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEecc
Q 029158           64 -KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKT  142 (198)
Q Consensus        64 -~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~  142 (198)
                       ..+..+.++||+|.......  .......+     ...-.+|-.++++|+..+  ......++.+.+.-....+++||.
T Consensus       208 ~~~~~d~vliDtaG~~~~~~~--l~~eL~~i-----~ral~~de~llvLDa~t~--~~~~~~~~~~~~~~~it~iilTKl  278 (328)
T 3e70_C          208 KARGIDVVLIDTAGRSETNRN--LMDEMKKI-----ARVTKPNLVIFVGDALAG--NAIVEQARQFNEAVKIDGIILTKL  278 (328)
T ss_dssp             HHHTCSEEEEEECCSCCTTTC--HHHHHHHH-----HHHHCCSEEEEEEEGGGT--THHHHHHHHHHHHSCCCEEEEECG
T ss_pred             HhccchhhHHhhccchhHHHH--HHHHHHHH-----HHHhcCCCCEEEEecHHH--HHHHHHHHHHHHhcCCCEEEEeCc
Confidence             01356789999997432111  11111111     111236889999998754  222233343433233458899999


Q ss_pred             CCCCcHHHHHHHHHHHHHHHhccCCCCCcEEeccCCCCChHHH
Q 029158          143 DTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSL  185 (198)
Q Consensus       143 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~~~gi~~l  185 (198)
                      |.......  ......+.       +.|+.+++  +|++++++
T Consensus       279 D~~a~~G~--~l~~~~~~-------~~pi~~i~--~Ge~v~dl  310 (328)
T 3e70_C          279 DADARGGA--ALSISYVI-------DAPILFVG--VGQGYDDL  310 (328)
T ss_dssp             GGCSCCHH--HHHHHHHH-------TCCEEEEE--CSSSTTCE
T ss_pred             CCccchhH--HHHHHHHH-------CCCEEEEe--CCCCcccc
Confidence            97543321  11222211       47888887  77776543

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=98.52  E-value=9e-08  Score=72.36  Aligned_cols=87  Identities=14%  Similarity=0.138  Sum_probs=57.5

Q ss_pred             cccccceEEEEEeCCCCCCcCcH--HHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEeccC
Q 029158          100 TRVSLKRVCLLIDTKWGVKPRDH--ELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSK  177 (198)
Q Consensus       100 ~~~~~d~vi~v~d~~~~~~~~~~--~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~  177 (198)
                      ...++|.+++|+|+..+......  .++..+...++|.++|+||+|+.++....+....+.+.+...   +.+++.+||.
T Consensus        83 ~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~---g~~v~~~sa~  159 (307)
T 1t9h_A           83 PICNVDQAVLVFSAVQPSFSTALLDRFLVLVEANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNI---GYDVYLTSSK  159 (307)
T ss_dssp             TEECCCEEEEEEESTTTTCCHHHHHHHHHHHHTTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHH---TCCEEECCHH
T ss_pred             HHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCccCchhhhHHHHHHHHHHHHhC---CCeEEEEecC
Confidence            35569999999999875444431  122233456899999999999998754211122233332221   4689999999


Q ss_pred             CCCChHHHHHHH
Q 029158          178 SGAGIRSLRTVL  189 (198)
Q Consensus       178 ~~~gi~~l~~~i  189 (198)
                      ++.|+++|++..
T Consensus       160 ~~~g~~~L~~~~  171 (307)
T 1t9h_A          160 DQDSLADIIPHF  171 (307)
T ss_dssp             HHTTCTTTGGGG
T ss_pred             CCCCHHHHHhhc
Confidence            999998877644

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=98.40  E-value=1.8e-06  Score=68.35  Aligned_cols=118  Identities=19%  Similarity=0.154  Sum_probs=64.2

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHh-------cCccceeecCCCCce------------eEEE-------------------
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALT-------RQWGVVRTSDKPGLT------------QTIN-------------------   61 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~-------~~~~~~~~~~~~~~t------------~~~~-------------------   61 (198)
                      ....|+++|.+|+||||++..|.       +. ++..+...+...            ....                   
T Consensus        99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~-kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~  177 (433)
T 2xxa_A           99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKK-KVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALK  177 (433)
T ss_dssp             SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCC-CEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCC-eEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHH
Confidence            34578899999999999999887       32 222221111000            0000                   


Q ss_pred             EEE-eCCceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCc-EEEEE
Q 029158           62 FFK-LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVL  139 (198)
Q Consensus        62 ~~~-~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p-~iiv~  139 (198)
                      ... .++++.|+||||.....  .   .....+. . ......++.+++|+|+..+  .......+.+.. ..+ .-+|+
T Consensus       178 ~~~~~~~D~VIIDTpG~l~~~--~---~l~~~L~-~-~~~~~~p~~vllVvda~~g--~~~~~~~~~f~~-~l~i~gvVl  247 (433)
T 2xxa_A          178 EAKLKFYDVLLVDTAGRLHVD--E---AMMDEIK-Q-VHASINPVETLFVVDAMTG--QDAANTAKAFNE-ALPLTGVVL  247 (433)
T ss_dssp             HHHHTTCSEEEEECCCCCTTC--H---HHHHHHH-H-HHHHSCCSEEEEEEETTBC--TTHHHHHHHHHH-HSCCCCEEE
T ss_pred             HHHhCCCCEEEEECCCccccc--H---HHHHHHH-H-HHHhhcCcceeEEeecchh--HHHHHHHHHHhc-cCCCeEEEE
Confidence            001 25689999999964321  0   1111111 1 1112247889999999764  222333333332 355 34799


Q ss_pred             eccCCCCcH
Q 029158          140 TKTDTVFPI  148 (198)
Q Consensus       140 nK~Dl~~~~  148 (198)
                      ||+|.....
T Consensus       248 nK~D~~~~~  256 (433)
T 2xxa_A          248 TKVDGDARG  256 (433)
T ss_dssp             ECTTSSSCC
T ss_pred             ecCCCCccH
Confidence            999986543

>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*

Probab=98.35  E-value=2.6e-06  Score=67.57  Aligned_cols=62  Identities=19%  Similarity=0.207  Sum_probs=39.7

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcC-----------------ccceeecCCCCceeEEEEEEe----------CCceEE
Q 029158           19 PDLPEIAFAGRSNVGKSSMLNALTRQ-----------------WGVVRTSDKPGLTQTINFFKL----------GTKLCL   71 (198)
Q Consensus        19 ~~~~~v~~vG~~~~GKSsli~~l~~~-----------------~~~~~~~~~~~~t~~~~~~~~----------~~~~~i   71 (198)
                      ...-.|+++|++++|||||+|.|++.                 ...........+|..+-.+..          +..+.+
T Consensus        65 ~~v~vVsV~G~~~~GKStLLN~llg~~~~~~~~~wl~~~~~~~~~f~~~~t~~~~T~GIw~~~~p~~~~~~~~~~~~vvl  144 (447)
T 3q5d_A           65 KEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLL  144 (447)
T ss_dssp             SBEEEEEEEESTTSSHHHHHHHHHHHHHCCSTTTSSCCTTSBCCSSCSCCSSCCCCCEEEEESSCEEEECSSSCEEEEEE
T ss_pred             CceEEEEEECCCCCcHHHHHHHHhhhcccccccccccccccccceecCCCCCCCceeEEEEecCccccccCCCCcceEEE
Confidence            34567999999999999999999863                 001111122334444433321          246999


Q ss_pred             EeCCCCccc
Q 029158           72 VDLPGYGFA   80 (198)
Q Consensus        72 iDtpG~~~~   80 (198)
                      +||||+.+.
T Consensus       145 lDTeG~~~~  153 (447)
T 3q5d_A          145 MDTQGTFDS  153 (447)
T ss_dssp             EEEECCCSS
T ss_pred             EcCCccccc
Confidence            999998764

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=98.29  E-value=3.8e-06  Score=64.76  Aligned_cols=83  Identities=17%  Similarity=0.198  Sum_probs=52.8

Q ss_pred             ccccceEEEEEeCCCCCCcCcHHH---HHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEeccC
Q 029158          101 RVSLKRVCLLIDTKWGVKPRDHEL---ISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSK  177 (198)
Q Consensus       101 ~~~~d~vi~v~d~~~~~~~~~~~~---~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~  177 (198)
                      ..++|.+++| ++..+ ......+   +-.....++|.++|+||+|+.+....+ ..+.+...+.   ..+.+++++||+
T Consensus       128 ~anvD~v~iv-~a~~P-~~~~~~i~r~L~~a~~~~~~~iivlNK~DL~~~~~~~-~~~~~~~~y~---~~G~~v~~~Sa~  201 (358)
T 2rcn_A          128 AANIDQIVIV-SAILP-ELSLNIIDRYLVGCETLQVEPLIVLNKIDLLDDEGMD-FVNEQMDIYR---NIGYRVLMVSSH  201 (358)
T ss_dssp             EECCCEEEEE-EESTT-TCCHHHHHHHHHHHHHHTCEEEEEEECGGGCCHHHHH-HHHHHHHHHH---TTTCCEEECBTT
T ss_pred             HhcCCEEEEE-EeCCC-CCCHHHHHHHHHHHHhcCCCEEEEEECccCCCchhHH-HHHHHHHHHH---hCCCcEEEEecC
Confidence            3568888866 55442 2222222   222345689999999999999865421 1222222222   335789999999


Q ss_pred             CCCChHHHHHHH
Q 029158          178 SGAGIRSLRTVL  189 (198)
Q Consensus       178 ~~~gi~~l~~~i  189 (198)
                      ++.|+++|...+
T Consensus       202 ~~~gl~~L~~~~  213 (358)
T 2rcn_A          202 TQDGLKPLEEAL  213 (358)
T ss_dssp             TTBTHHHHHHHH
T ss_pred             CCcCHHHHHHhc
Confidence            999999988765

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=98.26  E-value=1.1e-05  Score=60.97  Aligned_cols=23  Identities=26%  Similarity=0.380  Sum_probs=20.5

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhc
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTR   43 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~   43 (198)
                      ...++++|++||||||+++.|.+
T Consensus       102 g~vi~lvG~nGsGKTTll~~Lag  124 (304)
T 1rj9_A          102 GRVVLVVGVNGVGKTTTIAKLGR  124 (304)
T ss_dssp             SSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCcHHHHHHHHHH
Confidence            45799999999999999999884

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=98.25  E-value=6.8e-06  Score=65.76  Aligned_cols=150  Identities=19%  Similarity=0.203  Sum_probs=74.7

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCc-----cceeecCCCCc--------e----eEEEEE-------------------
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQW-----GVVRTSDKPGL--------T----QTINFF-------------------   63 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~~-----~~~~~~~~~~~--------t----~~~~~~-------------------   63 (198)
                      ..-.++++|+.|||||||++.|.+..     .+.........        .    ..+.+.                   
T Consensus       292 ~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~tV~e~l~~a  371 (503)
T 2yhs_A          292 APFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAA  371 (503)
T ss_dssp             TTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHHHHHHHHHHH
Confidence            44578999999999999999987531     12211111000        0    000000                   


Q ss_pred             -EeCCceEEEeCCCCccccchhHHHHHHHHHHHHHHhcc--cccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEe
Q 029158           64 -KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTR--VSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLT  140 (198)
Q Consensus        64 -~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~--~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~n  140 (198)
                       ..+..+.++||+|.....  .........+.+- .+..  ...+-+++++|+..+  ......++.+...--...+|+|
T Consensus       372 ~~~~~DvVLIDTaGrl~~~--~~lm~EL~kiv~i-ar~l~~~~P~evLLvLDattG--q~al~~ak~f~~~~~itgvIlT  446 (503)
T 2yhs_A          372 KARNIDVLIADTAGRLQNK--SHLMEELKKIVRV-MKKLDVEAPHEVMLTIDASTG--QNAVSQAKLFHEAVGLTGITLT  446 (503)
T ss_dssp             HHTTCSEEEECCCCSCCCH--HHHHHHHHHHHHH-HHTTCTTCSSEEEEEEEGGGT--HHHHHHHHHHHHHTCCSEEEEE
T ss_pred             HhcCCCEEEEeCCCccchh--hhHHHHHHHHHHH-HHHhccCCCCeeEEEecCccc--HHHHHHHHHHHhhcCCCEEEEE
Confidence             023578999999974321  1111111112111 1111  125678999998753  2223333434332223468999


Q ss_pred             ccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEeccCCCCChHHH
Q 029158          141 KTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSL  185 (198)
Q Consensus       141 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~~~gi~~l  185 (198)
                      |.|-......  .... ....      +.|+.++  -+|+++++|
T Consensus       447 KLD~takgG~--~lsi-~~~~------~~PI~fi--g~Ge~vdDL  480 (503)
T 2yhs_A          447 KLDGTAKGGV--IFSV-ADQF------GIPIRYI--GVGERIEDL  480 (503)
T ss_dssp             CGGGCSCCTH--HHHH-HHHH------CCCEEEE--ECSSSGGGE
T ss_pred             cCCCcccccH--HHHH-HHHH------CCCEEEE--ecCCChhhc
Confidence            9997543221  1111 1111      4677775  456666543

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=98.20  E-value=2.1e-05  Score=62.03  Aligned_cols=72  Identities=24%  Similarity=0.207  Sum_probs=38.9

Q ss_pred             CCceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCc-EEEEEeccCC
Q 029158           66 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKTDT  144 (198)
Q Consensus        66 ~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl  144 (198)
                      ++.+.++||||.....  .   ....++. .. .....+|.+++|+|+..+  .......+.+.. ..+ .-+|+||+|.
T Consensus       180 ~~DvVIIDTaG~l~~d--~---~l~~el~-~i-~~~~~pd~vlLVvDa~tg--q~av~~a~~f~~-~l~i~GVIlTKlD~  249 (425)
T 2ffh_A          180 ARDLILVDTAGRLQID--E---PLMGELA-RL-KEVLGPDEVLLVLDAMTG--QEALSVARAFDE-KVGVTGLVLTKLDG  249 (425)
T ss_dssp             TCSEEEEECCCCSSCC--H---HHHHHHH-HH-HHHHCCSEEEEEEEGGGT--THHHHHHHHHHH-HTCCCEEEEESGGG
T ss_pred             CCCEEEEcCCCccccc--H---HHHHHHH-Hh-hhccCCceEEEEEeccch--HHHHHHHHHHHh-cCCceEEEEeCcCC
Confidence            4679999999964321  1   1111110 11 111247889999999753  222223333332 233 5679999998


Q ss_pred             CCc
Q 029158          145 VFP  147 (198)
Q Consensus       145 ~~~  147 (198)
                      ...
T Consensus       250 ~~~  252 (425)
T 2ffh_A          250 DAR  252 (425)
T ss_dssp             CSS
T ss_pred             ccc
Confidence            653

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=98.18  E-value=6.3e-06  Score=62.32  Aligned_cols=24  Identities=21%  Similarity=0.250  Sum_probs=20.5

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhc
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTR   43 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~   43 (198)
                      ....|+++|++|+||||++..|.+
T Consensus       103 ~~~vi~ivG~~GsGKTTl~~~LA~  126 (306)
T 1vma_A          103 PPFVIMVVGVNGTGKTTSCGKLAK  126 (306)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCChHHHHHHHHHH
Confidence            344689999999999999998874

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=98.17  E-value=5.2e-07  Score=68.19  Aligned_cols=57  Identities=33%  Similarity=0.523  Sum_probs=34.0

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCccceeecCC-------CCceeEEEEEEeCCceEEEeCCCCcc
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDK-------PGLTQTINFFKLGTKLCLVDLPGYGF   79 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~-------~~~t~~~~~~~~~~~~~iiDtpG~~~   79 (198)
                      -..++++|++|+|||||+|.|.+... ...+..       ..+|......... .-.++||||+..
T Consensus       173 G~~~~lvG~sG~GKSTLln~L~g~~~-~~~G~I~~~~~~G~~tt~~~~~~~~~-~g~v~dtpg~~~  236 (307)
T 1t9h_A          173 DKTTVFAGQSGVGKSSLLNAISPELG-LRTNEISEHLGRGKHTTRHVELIHTS-GGLVADTPGFSS  236 (307)
T ss_dssp             TSEEEEEESHHHHHHHHHHHHCC--------------------CCCCCEEEET-TEEEESSCSCSS
T ss_pred             CCEEEEECCCCCCHHHHHHHhccccc-ccccceeeecCCCcccccHHHHhhcC-CEEEecCCCccc
Confidence            35799999999999999999998631 112211       1234333333333 457899999754

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=98.15  E-value=3e-05  Score=59.00  Aligned_cols=25  Identities=20%  Similarity=0.347  Sum_probs=20.8

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhc
Q 029158           19 PDLPEIAFAGRSNVGKSSMLNALTR   43 (198)
Q Consensus        19 ~~~~~v~~vG~~~~GKSsli~~l~~   43 (198)
                      .....|+++|++|+||||++..|.+
T Consensus       103 ~~~~vI~ivG~~G~GKTT~~~~LA~  127 (320)
T 1zu4_A          103 NRLNIFMLVGVNGTGKTTSLAKMAN  127 (320)
T ss_dssp             TSCEEEEEESSTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3445789999999999999998774

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=98.07  E-value=7.9e-06  Score=61.75  Aligned_cols=55  Identities=33%  Similarity=0.422  Sum_probs=34.5

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCccceeecCCC-------CceeEEEEEEeCCceEEEeCCCCc
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKP-------GLTQTINFFKLGTKLCLVDLPGYG   78 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~-------~~t~~~~~~~~~~~~~iiDtpG~~   78 (198)
                      ..++++|++|+|||||+|.|. .. ....+...       .+|...........-.++||||+.
T Consensus       166 ~i~~l~G~sG~GKSTLln~l~-~~-~~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~  227 (302)
T 2yv5_A          166 FICILAGPSGVGKSSILSRLT-GE-ELRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFS  227 (302)
T ss_dssp             CEEEEECSTTSSHHHHHHHHH-SC-CCCCSCC---------CCCCEEEEEETTTEEEESSCCCS
T ss_pred             cEEEEECCCCCCHHHHHHHHH-Hh-hCcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcC
Confidence            468999999999999999998 53 12222211       133332333333345789999974

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=98.05  E-value=7e-05  Score=56.34  Aligned_cols=24  Identities=21%  Similarity=0.189  Sum_probs=20.2

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhc
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTR   43 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~   43 (198)
                      ....++++|++|+||||++..|.+
T Consensus        97 ~~~~i~i~g~~G~GKTT~~~~la~  120 (295)
T 1ls1_A           97 DRNLWFLVGLQGSGKTTTAAKLAL  120 (295)
T ss_dssp             SSEEEEEECCTTTTHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            344688999999999999998874

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=98.04  E-value=3.6e-06  Score=64.87  Aligned_cols=58  Identities=34%  Similarity=0.408  Sum_probs=36.1

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCccceeecCCC---C----ceeEEEEEEeCCceEEEeCCCCcc
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKP---G----LTQTINFFKLGTKLCLVDLPGYGF   79 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~---~----~t~~~~~~~~~~~~~iiDtpG~~~   79 (198)
                      ..++++|++|+|||||+|.|++.......+...   +    +|....+........++||||+.+
T Consensus       216 ~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~tt~~~~i~~v~q~~~l~dtpgv~e  280 (358)
T 2rcn_A          216 RISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAARLYHFPHGGDVIDSPGVRE  280 (358)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHCCSSCCCCC-------------CCCEEEECTTSCEEEECHHHHT
T ss_pred             CEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccceEEEEEEEECCCCEecCcccHHH
Confidence            478999999999999999999863201111111   1    333334444444567899999643

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=98.03  E-value=6.1e-06  Score=62.16  Aligned_cols=24  Identities=25%  Similarity=0.372  Sum_probs=20.6

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhc
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTR   43 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~   43 (198)
                      ....++++|++|+||||++..|.+
T Consensus       104 ~g~vi~lvG~~GsGKTTl~~~LA~  127 (296)
T 2px0_A          104 HSKYIVLFGSTGAGKTTTLAKLAA  127 (296)
T ss_dssp             CSSEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            345799999999999999998864

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=98.00  E-value=6.9e-05  Score=56.97  Aligned_cols=25  Identities=16%  Similarity=0.344  Sum_probs=22.1

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      ..+.++++|+.|||||||++.|++.
T Consensus         3 ~i~v~~i~G~~GaGKTTll~~l~~~   27 (318)
T 1nij_A            3 PIAVTLLTGFLGAGKTTLLRHILNE   27 (318)
T ss_dssp             CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred             cccEEEEEecCCCCHHHHHHHHHhh
Confidence            3567899999999999999999965

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=97.96  E-value=5e-06  Score=58.77  Aligned_cols=29  Identities=31%  Similarity=0.378  Sum_probs=23.6

Q ss_pred             CCCCCCCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           16 FPAPDLPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        16 ~~~~~~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      .|+.....|+++|++|+|||||++.|++.
T Consensus        14 ~~~~~g~~ivl~GPSGaGKsTL~~~L~~~   42 (197)
T 3ney_A           14 LYFQGRKTLVLIGASGVGRSHIKNALLSQ   42 (197)
T ss_dssp             --CCSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCCCCCEEEEECcCCCCHHHHHHHHHhh
Confidence            45555667899999999999999999875

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=97.95  E-value=7.9e-06  Score=61.73  Aligned_cols=56  Identities=36%  Similarity=0.468  Sum_probs=33.7

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCccceeecCCC-------CceeEEEEEEeCCceEEEeCCCCc
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKP-------GLTQTINFFKLGTKLCLVDLPGYG   78 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~-------~~t~~~~~~~~~~~~~iiDtpG~~   78 (198)
                      ..++++|++|+|||||+|.|.+... ...+...       .+|...........-.++|+||+.
T Consensus       170 eiv~l~G~sG~GKSTll~~l~g~~~-~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~  232 (301)
T 1u0l_A          170 KISTMAGLSGVGKSSLLNAINPGLK-LRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFA  232 (301)
T ss_dssp             SEEEEECSTTSSHHHHHHHHSTTCC-CC-------------CCCSCCEEECTTSCEEESSCSST
T ss_pred             CeEEEECCCCCcHHHHHHHhccccc-ccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCC
Confidence            4689999999999999999998632 1111111       122222222222345789999964

>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*

Probab=97.74  E-value=0.00026  Score=56.06  Aligned_cols=64  Identities=19%  Similarity=0.199  Sum_probs=40.6

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhc-------C----------ccceeecCCCCceeEEEEEEe----------CCceEE
Q 029158           19 PDLPEIAFAGRSNVGKSSMLNALTR-------Q----------WGVVRTSDKPGLTQTINFFKL----------GTKLCL   71 (198)
Q Consensus        19 ~~~~~v~~vG~~~~GKSsli~~l~~-------~----------~~~~~~~~~~~~t~~~~~~~~----------~~~~~i   71 (198)
                      .....|+++|++++|||+|+|.|++       .          ...........+|..+-.+..          +..+.+
T Consensus        65 ~~v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vll  144 (457)
T 4ido_A           65 KEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLL  144 (457)
T ss_dssp             SBEEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEEE
T ss_pred             CceEEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEEE
Confidence            3556788999999999999996652       1          111222233445665543321          235999


Q ss_pred             EeCCCCccccc
Q 029158           72 VDLPGYGFAYA   82 (198)
Q Consensus        72 iDtpG~~~~~~   82 (198)
                      +||.|+++...
T Consensus       145 lDTEG~~d~~~  155 (457)
T 4ido_A          145 MDTQGTFDSQS  155 (457)
T ss_dssp             EEECCBTCTTC
T ss_pred             EeccCCCCccc
Confidence            99999876543

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=97.72  E-value=1.3e-05  Score=56.08  Aligned_cols=36  Identities=28%  Similarity=0.320  Sum_probs=24.9

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeE
Q 029158           24 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT   59 (198)
Q Consensus        24 v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~   59 (198)
                      |+++||+|+|||||++.|+....-...-..+.||+.
T Consensus         4 IVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~   39 (186)
T 1ex7_A            4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRT   39 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSC
T ss_pred             EEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccC
Confidence            789999999999999999865211122334445544

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=97.71  E-value=2.3e-05  Score=54.57  Aligned_cols=23  Identities=22%  Similarity=0.450  Sum_probs=20.9

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      ..++++|++|||||||++.|.+.
T Consensus         6 ~~i~i~GpsGsGKSTL~~~L~~~   28 (180)
T 1kgd_A            6 KTLVLLGAHGVGRRHIKNTLITK   28 (180)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHhh
Confidence            46899999999999999999875

>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*

Probab=97.71  E-value=0.00059  Score=48.04  Aligned_cols=65  Identities=9%  Similarity=-0.009  Sum_probs=42.4

Q ss_pred             CCceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhh-----CCcEEEEEe
Q 029158           66 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERS-----QTKYQVVLT  140 (198)
Q Consensus        66 ~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~-----~~p~iiv~n  140 (198)
                      .+++.++|||+....            .....+.   .+|.+++++..+... .....+++.+...     +.++.+|+|
T Consensus        75 ~yD~viiD~~~~~~~------------~~~~~l~---~ad~viiv~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~vv~N  138 (206)
T 4dzz_A           75 DYDFAIVDGAGSLSV------------ITSAAVM---VSDLVIIPVTPSPLD-FSAAGSVVTVLEAQAYSRKVEARFLIT  138 (206)
T ss_dssp             TSSEEEEECCSSSSH------------HHHHHHH---HCSEEEEEECSCTTT-HHHHHHHHHHHTTSCGGGCCEEEEEEC
T ss_pred             CCCEEEEECCCCCCH------------HHHHHHH---HCCEEEEEecCCHHH-HHHHHHHHHHHHHHHhCCCCcEEEEEe
Confidence            468999999985321            1111111   289999999987644 4444556666543     467899999


Q ss_pred             ccCCCC
Q 029158          141 KTDTVF  146 (198)
Q Consensus       141 K~Dl~~  146 (198)
                      ++|...
T Consensus       139 ~~~~~~  144 (206)
T 4dzz_A          139 RKIEMA  144 (206)
T ss_dssp             SBCTTE
T ss_pred             ccCCCc
Confidence            999654

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=97.66  E-value=2.5e-05  Score=54.39  Aligned_cols=22  Identities=23%  Similarity=0.602  Sum_probs=20.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 029158           23 EIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        23 ~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      +++++|++|+|||||++.+++.
T Consensus         2 ~i~l~G~nGsGKTTLl~~l~g~   23 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVKKIVER   23 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999999876

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=97.65  E-value=2.3e-05  Score=55.48  Aligned_cols=23  Identities=30%  Similarity=0.566  Sum_probs=20.7

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      ..++++|++|||||||++.|.+.
T Consensus         5 ~~i~lvGpsGaGKSTLl~~L~~~   27 (198)
T 1lvg_A            5 RPVVLSGPSGAGKSTLLKKLFQE   27 (198)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHhh
Confidence            46899999999999999999874

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=97.56  E-value=5.7e-05  Score=53.79  Aligned_cols=25  Identities=28%  Similarity=0.357  Sum_probs=22.0

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      ....|+++|++|||||||++.|.+.
T Consensus         7 ~g~~i~l~GpsGsGKsTl~~~L~~~   31 (208)
T 3tau_A            7 RGLLIVLSGPSGVGKGTVREAVFKD   31 (208)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHS
T ss_pred             CCcEEEEECcCCCCHHHHHHHHHhh
Confidence            3456899999999999999999876

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=97.51  E-value=5.4e-05  Score=52.90  Aligned_cols=23  Identities=26%  Similarity=0.429  Sum_probs=20.9

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      ..++++|++|||||||++.|.+.
T Consensus        10 ~~i~l~G~~GsGKSTl~~~La~~   32 (191)
T 1zp6_A           10 NILLLSGHPGSGKSTIAEALANL   32 (191)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHTC
T ss_pred             eEEEEECCCCCCHHHHHHHHHhc
Confidence            46899999999999999999875

>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*

Probab=97.50  E-value=0.011  Score=45.51  Aligned_cols=90  Identities=8%  Similarity=-0.009  Sum_probs=52.6

Q ss_pred             cceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEE-EEEeccCCCC--cHHHHH----HHHHHHHHHHhccCCCCCcEEecc
Q 029158          104 LKRVCLLIDTKWGVKPRDHELISLMERSQTKYQ-VVLTKTDTVF--PIDVAR----RAMQIEESLKANNSLVQPVMMVSS  176 (198)
Q Consensus       104 ~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~i-iv~nK~Dl~~--~~~~~~----~~~~~~~~~~~~~~~~~~v~~~Sa  176 (198)
                      .+.+++|.-+...........++.++..+.|+. +|+|++....  +.....    ....+++..........-.+|...
T Consensus       237 ~~~~vlV~~p~~~~~~e~~r~~~~l~~~~i~v~gvV~N~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~l~~iPl~~  316 (349)
T 3ug7_A          237 RTAFRLVVIPEEMSILESERAMKALQKYGIPIDAVIVNQLIPEDVQCDFCRARRELQLKRLEMIKEKFGDKVIAYVPLLR  316 (349)
T ss_dssp             TEEEEEEECSSHHHHHHHHHHHHHHHHTTCCEEEEEEEEECCSCCCSHHHHHHHHHHHHHHHHHHHHSTTSEEEEEECCS
T ss_pred             CceEEEEECCCccHHHHHHHHHHHHHHCCCCeeEEEEcCCccccCCCchHHHHHHHHHHHHHHHHHHcCCCcEEEecCCC
Confidence            366788877654323334556777788888885 7999998653  221111    122222222223233344677888


Q ss_pred             CCCCChHHHHHHHHHhh
Q 029158          177 KSGAGIRSLRTVLSKIA  193 (198)
Q Consensus       177 ~~~~gi~~l~~~i~~~~  193 (198)
                      ..-.|++.|........
T Consensus       317 ~e~~g~~~L~~~~~~l~  333 (349)
T 3ug7_A          317 TEAKGIETLKQIAKILY  333 (349)
T ss_dssp             SCSCSHHHHHHHHHHHC
T ss_pred             CCCCCHHHHHHHHHHHc
Confidence            88889888877655443

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=97.50  E-value=6.5e-05  Score=53.04  Aligned_cols=23  Identities=26%  Similarity=0.410  Sum_probs=20.8

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      ..++++|++|||||||++.|.+.
T Consensus         8 ~ii~l~Gp~GsGKSTl~~~L~~~   30 (205)
T 3tr0_A            8 NLFIISAPSGAGKTSLVRALVKA   30 (205)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             cEEEEECcCCCCHHHHHHHHHhh
Confidence            46899999999999999999875

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=97.50  E-value=4.7e-05  Score=54.15  Aligned_cols=24  Identities=29%  Similarity=0.466  Sum_probs=21.2

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      .-.++++|++|||||||++.|.+.
T Consensus        20 Gei~~l~GpnGsGKSTLl~~l~gl   43 (207)
T 1znw_A           20 GRVVVLSGPSAVGKSTVVRCLRER   43 (207)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhh
Confidence            346899999999999999999875

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=97.50  E-value=5.4e-05  Score=54.35  Aligned_cols=25  Identities=24%  Similarity=0.533  Sum_probs=21.7

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      ....++++|++|||||||++.|.+.
T Consensus        22 ~G~~~~lvGpsGsGKSTLl~~L~g~   46 (218)
T 1z6g_A           22 NIYPLVICGPSGVGKGTLIKKLLNE   46 (218)
T ss_dssp             CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhh
Confidence            3446899999999999999999875

>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}

Probab=97.48  E-value=0.00041  Score=49.34  Aligned_cols=66  Identities=6%  Similarity=-0.024  Sum_probs=41.9

Q ss_pred             CCceEEEeCCCC-ccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhh-CCcEEEEEeccC
Q 029158           66 GTKLCLVDLPGY-GFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERS-QTKYQVVLTKTD  143 (198)
Q Consensus        66 ~~~~~iiDtpG~-~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~-~~p~iiv~nK~D  143 (198)
                      .+++.++|||+. ...            .....+.   .+|.+++++..+.........+++.++.. +.++.+|+|++|
T Consensus        67 ~yD~viiD~p~~~~~~------------~~~~~l~---~aD~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N~~~  131 (209)
T 3cwq_A           67 KYQNIVIDTQARPEDE------------DLEALAD---GCDLLVIPSTPDALALDALMLTIETLQKLGNNRFRILLTIIP  131 (209)
T ss_dssp             GCSEEEEEEECCCSSS------------HHHHHHH---TSSEEEEEECSSHHHHHHHHHHHHHHHHTCSSSEEEEECSBC
T ss_pred             cCCEEEEeCCCCcCcH------------HHHHHHH---HCCEEEEEecCCchhHHHHHHHHHHHHhccCCCEEEEEEecC
Confidence            468999999985 321            1111222   38999999988642122223455666553 677889999999


Q ss_pred             CCC
Q 029158          144 TVF  146 (198)
Q Consensus       144 l~~  146 (198)
                      ...
T Consensus       132 ~~~  134 (209)
T 3cwq_A          132 PYP  134 (209)
T ss_dssp             CTT
T ss_pred             Ccc
Confidence            865

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=97.48  E-value=6.1e-05  Score=53.59  Aligned_cols=26  Identities=31%  Similarity=0.501  Sum_probs=22.5

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           19 PDLPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        19 ~~~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      .....|+++|++|||||||++.|.+.
T Consensus        20 ~~g~~v~I~G~sGsGKSTl~~~l~~~   45 (208)
T 3c8u_A           20 PGRQLVALSGAPGSGKSTLSNPLAAA   45 (208)
T ss_dssp             CSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            34567999999999999999999875

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=97.46  E-value=6.3e-05  Score=51.87  Aligned_cols=23  Identities=22%  Similarity=0.330  Sum_probs=19.7

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      -.++++|++|||||||++.++..
T Consensus        10 ei~~l~G~nGsGKSTl~~~~~~~   32 (171)
T 4gp7_A           10 SLVVLIGSSGSGKSTFAKKHFKP   32 (171)
T ss_dssp             EEEEEECCTTSCHHHHHHHHSCG
T ss_pred             EEEEEECCCCCCHHHHHHHHccC
Confidence            35899999999999999987654

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=97.45  E-value=0.00047  Score=54.39  Aligned_cols=25  Identities=16%  Similarity=0.220  Sum_probs=21.7

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      ....|+++|++||||||+.+.|...
T Consensus       257 ~~~lIil~G~pGSGKSTla~~L~~~  281 (416)
T 3zvl_A          257 NPEVVVAVGFPGAGKSTFIQEHLVS  281 (416)
T ss_dssp             SCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHh
Confidence            3456899999999999999999875

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.44  E-value=0.0014  Score=51.92  Aligned_cols=24  Identities=17%  Similarity=0.284  Sum_probs=21.7

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      ..-|++.||||+|||+|+.++.+.
T Consensus       215 prGvLL~GPPGtGKTllAkAiA~e  238 (437)
T 4b4t_L          215 PKGVLLYGPPGTGKTLLAKAVAAT  238 (437)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHH
Confidence            356999999999999999999986

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=97.44  E-value=7.4e-05  Score=51.32  Aligned_cols=23  Identities=30%  Similarity=0.423  Sum_probs=20.9

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      ..|+++|++||||||+.+.|.+.
T Consensus         5 ~~i~l~G~~GsGKSTl~~~La~~   27 (173)
T 1kag_A            5 RNIFLVGPMGAGKSTIGRQLAQQ   27 (173)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            46999999999999999999875

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=97.43  E-value=8.3e-05  Score=53.46  Aligned_cols=24  Identities=29%  Similarity=0.324  Sum_probs=21.4

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      ...++++|++|||||||++.|++.
T Consensus        16 G~ii~l~GpsGsGKSTLlk~L~g~   39 (219)
T 1s96_A           16 GTLYIVSAPSGAGKSSLIQALLKT   39 (219)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHhcc
Confidence            346899999999999999999886

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=97.43  E-value=8e-05  Score=54.15  Aligned_cols=24  Identities=33%  Similarity=0.358  Sum_probs=21.6

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      --.++++|+.|||||||++.+.+-
T Consensus        31 Ge~~~iiG~nGsGKSTLl~~l~Gl   54 (235)
T 3tif_A           31 GEFVSIMGPSGSGKSTMLNIIGCL   54 (235)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred             CCEEEEECCCCCcHHHHHHHHhcC
Confidence            346899999999999999999986

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=97.42  E-value=9.5e-05  Score=51.18  Aligned_cols=25  Identities=36%  Similarity=0.574  Sum_probs=22.3

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      +.+.++++|++|+|||||++.|+..
T Consensus         5 ~~~~i~i~G~sGsGKTTl~~~l~~~   29 (174)
T 1np6_A            5 MIPLLAFAAWSGTGKTTLLKKLIPA   29 (174)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             cceEEEEEeCCCCCHHHHHHHHHHh
Confidence            4678999999999999999999874

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=97.40  E-value=9.3e-05  Score=52.28  Aligned_cols=25  Identities=32%  Similarity=0.266  Sum_probs=21.6

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      ....|+++|++||||||+.+.|...
T Consensus        17 ~~~~I~l~G~~GsGKSTla~~L~~~   41 (202)
T 3t61_A           17 FPGSIVVMGVSGSGKSSVGEAIAEA   41 (202)
T ss_dssp             CSSCEEEECSTTSCHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            3457999999999999999998764

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=97.38  E-value=0.00012  Score=51.63  Aligned_cols=26  Identities=23%  Similarity=0.406  Sum_probs=22.0

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           19 PDLPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        19 ~~~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      .....|+++|++||||||+.+.|...
T Consensus        23 ~~~~~i~l~G~~GsGKsTl~~~La~~   48 (199)
T 3vaa_A           23 NAMVRIFLTGYMGAGKTTLGKAFARK   48 (199)
T ss_dssp             -CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence            34568999999999999999999864

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=97.37  E-value=0.00015  Score=51.38  Aligned_cols=24  Identities=25%  Similarity=0.425  Sum_probs=21.6

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      ...|+++|++||||||+.+.|.+.
T Consensus        21 ~~~i~i~G~~GsGKSTl~~~L~~~   44 (207)
T 2qt1_A           21 TFIIGISGVTNSGKTTLAKNLQKH   44 (207)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHh
Confidence            457899999999999999999886

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=97.36  E-value=0.0001  Score=53.17  Aligned_cols=23  Identities=30%  Similarity=0.361  Sum_probs=21.0

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      -.++++|+.|||||||++.+.+-
T Consensus        31 e~~~iiG~nGsGKSTLl~~l~Gl   53 (224)
T 2pcj_A           31 EFVSIIGASGSGKSTLLYILGLL   53 (224)
T ss_dssp             CEEEEEECTTSCHHHHHHHHTTS
T ss_pred             CEEEEECCCCCCHHHHHHHHhcC
Confidence            46899999999999999999986

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=97.36  E-value=0.00016  Score=50.38  Aligned_cols=27  Identities=26%  Similarity=0.430  Sum_probs=22.8

Q ss_pred             CCCCCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           18 APDLPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        18 ~~~~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      ......|+++|++||||||+.+.|...
T Consensus         7 ~~~~~~I~l~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A            7 QPKGINILITGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             CCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence            344568999999999999999998764

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=97.36  E-value=0.00013  Score=51.59  Aligned_cols=24  Identities=25%  Similarity=0.623  Sum_probs=21.0

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      ...|+++|++|||||||++.|...
T Consensus        12 ~~~i~l~G~sGsGKsTl~~~L~~~   35 (204)
T 2qor_A           12 IPPLVVCGPSGVGKGTLIKKVLSE   35 (204)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHh
Confidence            456899999999999999999764

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=97.35  E-value=0.00012  Score=50.06  Aligned_cols=23  Identities=22%  Similarity=0.265  Sum_probs=20.4

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      ..|+++|++||||||+.+.|...
T Consensus         2 ~~i~l~G~~GsGKsT~~~~L~~~   24 (173)
T 3kb2_A            2 TLIILEGPDCCFKSTVAAKLSKE   24 (173)
T ss_dssp             CEEEEECSSSSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999999999764

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=97.34  E-value=0.00012  Score=53.37  Aligned_cols=24  Identities=38%  Similarity=0.479  Sum_probs=21.7

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      --.++++|+.|||||||++.+++-
T Consensus        31 Ge~~~i~G~nGsGKSTLl~~l~Gl   54 (237)
T 2cbz_A           31 GALVAVVGQVGCGKSSLLSALLAE   54 (237)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcC
Confidence            346899999999999999999986

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=97.34  E-value=0.00013  Score=50.28  Aligned_cols=22  Identities=23%  Similarity=0.200  Sum_probs=20.1

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhc
Q 029158           22 PEIAFAGRSNVGKSSMLNALTR   43 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~   43 (198)
                      ..|+++|++||||||+.+.|..
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEecCCCCCHHHHHHHHHh
Confidence            3589999999999999999986

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=97.33  E-value=0.00013  Score=53.27  Aligned_cols=23  Identities=22%  Similarity=0.305  Sum_probs=21.3

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      -.++++|+.|||||||++.+.+-
T Consensus        25 e~~~liG~nGsGKSTLl~~l~Gl   47 (240)
T 2onk_A           25 DYCVLLGPTGAGKSVFLELIAGI   47 (240)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEEECCCCCCHHHHHHHHhCC
Confidence            56899999999999999999986

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=97.33  E-value=0.00013  Score=51.50  Aligned_cols=24  Identities=17%  Similarity=0.371  Sum_probs=21.2

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      ...|+++|++|||||||++.|.+.
T Consensus        29 g~~i~l~G~~GsGKSTl~~~L~~~   52 (200)
T 4eun_A           29 TRHVVVMGVSGSGKTTIAHGVADE   52 (200)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHh
Confidence            457999999999999999999764

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=97.33  E-value=0.00011  Score=49.97  Aligned_cols=23  Identities=13%  Similarity=0.289  Sum_probs=20.9

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      -.++++|+.|||||||++.+++.
T Consensus        34 e~v~L~G~nGaGKTTLlr~l~g~   56 (158)
T 1htw_A           34 IMVYLNGDLGAGKTTLTRGMLQG   56 (158)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHh
Confidence            36899999999999999999885

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=97.33  E-value=4.5e-05  Score=52.68  Aligned_cols=24  Identities=17%  Similarity=0.354  Sum_probs=21.2

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      ...++++|++|||||||++.|.+.
T Consensus         2 ~~~v~IvG~SGsGKSTL~~~L~~~   25 (171)
T 2f1r_A            2 SLILSIVGTSDSGKTTLITRMMPI   25 (171)
T ss_dssp             -CEEEEEESCHHHHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHH
Confidence            357999999999999999999875

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=97.33  E-value=0.00013  Score=49.91  Aligned_cols=20  Identities=30%  Similarity=0.381  Sum_probs=18.7

Q ss_pred             CeEEEEcCCCCCHHHHHHHH
Q 029158           22 PEIAFAGRSNVGKSSMLNAL   41 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l   41 (198)
                      +.|+++|++||||||+.+.|
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHH
Confidence            46899999999999999999

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=97.33  E-value=0.00011  Score=52.28  Aligned_cols=24  Identities=33%  Similarity=0.452  Sum_probs=21.3

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      ...|+++|++|||||||++.|.+.
T Consensus         6 ~~~i~i~G~~GsGKSTl~~~l~~~   29 (211)
T 3asz_A            6 PFVIGIAGGTASGKTTLAQALART   29 (211)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHH
Confidence            346999999999999999999875

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=97.33  E-value=0.00015  Score=52.86  Aligned_cols=22  Identities=18%  Similarity=0.335  Sum_probs=20.5

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHh
Q 029158           21 LPEIAFAGRSNVGKSSMLNALT   42 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~   42 (198)
                      ...|+++|++|||||||++.|.
T Consensus        27 ~~~i~l~G~~GsGKSTl~k~La   48 (246)
T 2bbw_A           27 LLRAVILGPPGSGKGTVCQRIA   48 (246)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHH
Confidence            4579999999999999999998

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=97.33  E-value=0.00014  Score=51.36  Aligned_cols=23  Identities=26%  Similarity=0.393  Sum_probs=20.9

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      ..|+++|++||||||+++.|.+.
T Consensus         7 ~~i~l~G~~GsGKSTl~~~L~~~   29 (207)
T 2j41_A            7 LLIVLSGPSGVGKGTVRKRIFED   29 (207)
T ss_dssp             CEEEEECSTTSCHHHHHHHHHHC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHh
Confidence            46899999999999999999875

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=97.33  E-value=0.00012  Score=54.40  Aligned_cols=23  Identities=26%  Similarity=0.404  Sum_probs=21.1

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      -.++++|+.|||||||++.+.+-
T Consensus        35 e~~~iiGpnGsGKSTLl~~l~Gl   57 (275)
T 3gfo_A           35 EVTAILGGNGVGKSTLFQNFNGI   57 (275)
T ss_dssp             SEEEEECCTTSSHHHHHHHHTTS
T ss_pred             CEEEEECCCCCCHHHHHHHHHcC
Confidence            46899999999999999999986

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=97.32  E-value=0.00014  Score=50.02  Aligned_cols=24  Identities=25%  Similarity=0.297  Sum_probs=20.8

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      ...|+++|++||||||+++.|.+.
T Consensus         8 g~~i~l~G~~GsGKSTl~~~l~~~   31 (175)
T 1knq_A            8 HHIYVLMGVSGSGKSAVASEVAHQ   31 (175)
T ss_dssp             SEEEEEECSTTSCHHHHHHHHHHH
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHh
Confidence            346899999999999999998763

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=97.32  E-value=0.00013  Score=54.08  Aligned_cols=24  Identities=33%  Similarity=0.405  Sum_probs=21.5

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      --.++++|+.|||||||++.+.+-
T Consensus        37 Ge~~~liG~nGsGKSTLl~~l~Gl   60 (266)
T 4g1u_C           37 GEMVAIIGPNGAGKSTLLRLLTGY   60 (266)
T ss_dssp             TCEEEEECCTTSCHHHHHHHHTSS
T ss_pred             CCEEEEECCCCCcHHHHHHHHhcC
Confidence            346899999999999999999986

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=97.32  E-value=0.00013  Score=53.27  Aligned_cols=24  Identities=46%  Similarity=0.545  Sum_probs=21.5

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      --.++++|+.|||||||++.+++-
T Consensus        28 Ge~~~i~G~nGsGKSTLl~~l~Gl   51 (243)
T 1mv5_A           28 NSIIAFAGPSGGGKSTIFSLLERF   51 (243)
T ss_dssp             TEEEEEECCTTSSHHHHHHHHTTS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcC
Confidence            346899999999999999999975

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=97.31  E-value=0.00013  Score=53.45  Aligned_cols=23  Identities=35%  Similarity=0.517  Sum_probs=21.2

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      -.++++|+.|||||||++.+++-
T Consensus        36 e~~~i~G~nGsGKSTLl~~l~Gl   58 (247)
T 2ff7_A           36 EVIGIVGRSGSGKSTLTKLIQRF   58 (247)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTS
T ss_pred             CEEEEECCCCCCHHHHHHHHhcC
Confidence            46899999999999999999986

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=97.31  E-value=0.00013  Score=53.84  Aligned_cols=24  Identities=29%  Similarity=0.344  Sum_probs=21.4

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      --.++++|+.|||||||++.+++-
T Consensus        32 Ge~~~liG~nGsGKSTLlk~l~Gl   55 (262)
T 1b0u_A           32 GDVISIIGSSGSGKSTFLRCINFL   55 (262)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcC
Confidence            346899999999999999999986

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=97.30  E-value=0.0002  Score=50.47  Aligned_cols=28  Identities=18%  Similarity=0.306  Sum_probs=23.3

Q ss_pred             CCCCCCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           17 PAPDLPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        17 ~~~~~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      ++.....|+++|.+||||||+.+.|...
T Consensus        11 ~~~~~~~I~l~G~~GsGKsT~~~~L~~~   38 (203)
T 1ukz_A           11 SPDQVSVIFVLGGPGAGKGTQCEKLVKD   38 (203)
T ss_dssp             CTTTCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            4445568999999999999999998754

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=97.30  E-value=0.00012  Score=54.05  Aligned_cols=24  Identities=21%  Similarity=0.351  Sum_probs=21.1

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      .-.++++|++|||||||++.+.+.
T Consensus        25 g~~v~i~Gp~GsGKSTll~~l~g~   48 (261)
T 2eyu_A           25 MGLILVTGPTGSGKSTTIASMIDY   48 (261)
T ss_dssp             SEEEEEECSTTCSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCccHHHHHHHHHHh
Confidence            346899999999999999999874

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=97.30  E-value=0.00013  Score=52.23  Aligned_cols=23  Identities=22%  Similarity=0.576  Sum_probs=20.9

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      -.++++|+.|||||||++.+++-
T Consensus        36 e~~~iiG~NGsGKSTLlk~l~Gl   58 (214)
T 1sgw_A           36 NVVNFHGPNGIGKTTLLKTISTY   58 (214)
T ss_dssp             CCEEEECCTTSSHHHHHHHHTTS
T ss_pred             CEEEEECCCCCCHHHHHHHHhcC
Confidence            35899999999999999999986

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=97.30  E-value=0.00011  Score=51.22  Aligned_cols=21  Identities=29%  Similarity=0.374  Sum_probs=19.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 029158           23 EIAFAGRSNVGKSSMLNALTR   43 (198)
Q Consensus        23 ~v~~vG~~~~GKSsli~~l~~   43 (198)
                      .++++|++|||||||++.|.+
T Consensus         4 ii~l~G~~GaGKSTl~~~L~~   24 (189)
T 2bdt_A            4 LYIITGPAGVGKSTTCKRLAA   24 (189)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHhc
Confidence            578999999999999999976

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=97.30  E-value=0.00014  Score=52.56  Aligned_cols=23  Identities=30%  Similarity=0.485  Sum_probs=21.2

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      -.++++|+.|||||||++.+++.
T Consensus        35 e~~~i~G~nGsGKSTLl~~l~Gl   57 (229)
T 2pze_A           35 QLLAVAGSTGAGKTSLLMMIMGE   57 (229)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTTS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            46899999999999999999986

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.29  E-value=0.0022  Score=50.17  Aligned_cols=23  Identities=17%  Similarity=0.362  Sum_probs=21.1

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      .-|++.||||+|||+|+.++.+.
T Consensus       183 rGvLL~GPPGTGKTllAkAiA~e  205 (405)
T 4b4t_J          183 KGVILYGPPGTGKTLLARAVAHH  205 (405)
T ss_dssp             CCEEEESCSSSSHHHHHHHHHHH
T ss_pred             CceEEeCCCCCCHHHHHHHHHHh
Confidence            45999999999999999999886

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=97.29  E-value=0.00014  Score=53.50  Aligned_cols=24  Identities=25%  Similarity=0.309  Sum_probs=21.5

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      --.++++|+.|||||||++.+.+-
T Consensus        33 Ge~~~liG~nGsGKSTLlk~l~Gl   56 (257)
T 1g6h_A           33 GDVTLIIGPNGSGKSTLINVITGF   56 (257)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            346899999999999999999986

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=97.27  E-value=0.0002  Score=49.34  Aligned_cols=23  Identities=30%  Similarity=0.445  Sum_probs=20.6

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      ..|+++|++||||||+.+.|...
T Consensus         4 ~~i~l~G~~GsGKST~a~~La~~   26 (178)
T 1qhx_A            4 RMIILNGGSSAGKSGIVRCLQSV   26 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHh
Confidence            46899999999999999999864

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=97.27  E-value=0.00016  Score=53.46  Aligned_cols=24  Identities=29%  Similarity=0.329  Sum_probs=21.5

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      --.++++|+.|||||||++.+.+-
T Consensus        50 Gei~~liG~NGsGKSTLlk~l~Gl   73 (263)
T 2olj_A           50 GEVVVVIGPSGSGKSTFLRCLNLL   73 (263)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred             CCEEEEEcCCCCcHHHHHHHHHcC
Confidence            346899999999999999999986

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=97.27  E-value=0.00016  Score=52.73  Aligned_cols=23  Identities=22%  Similarity=0.432  Sum_probs=21.1

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      -.++++|+.|||||||++.+++-
T Consensus        33 e~~~l~G~nGsGKSTLl~~l~Gl   55 (240)
T 1ji0_A           33 QIVTLIGANGAGKTTTLSAIAGL   55 (240)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            46899999999999999999986

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=97.26  E-value=0.00016  Score=53.40  Aligned_cols=23  Identities=30%  Similarity=0.437  Sum_probs=21.3

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      -.++++|+.|||||||++.|.+-
T Consensus        47 e~~~i~G~nGsGKSTLl~~l~Gl   69 (260)
T 2ghi_A           47 TTCALVGHTGSGKSTIAKLLYRF   69 (260)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTS
T ss_pred             CEEEEECCCCCCHHHHHHHHhcc
Confidence            46899999999999999999986

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=97.26  E-value=0.00013  Score=54.96  Aligned_cols=25  Identities=36%  Similarity=0.454  Sum_probs=21.5

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      ..-.++++|++|+|||||++.|.+-
T Consensus       125 ~Ge~vaIvGpsGsGKSTLl~lL~gl  149 (305)
T 2v9p_A          125 KKNCLAFIGPPNTGKSMLCNSLIHF  149 (305)
T ss_dssp             TCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhhh
Confidence            3456899999999999999998864

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=97.26  E-value=0.00019  Score=49.81  Aligned_cols=24  Identities=29%  Similarity=0.398  Sum_probs=21.2

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      .+.|+++|++||||||+.+.|...
T Consensus         5 ~~~i~l~G~~GsGKst~a~~La~~   28 (185)
T 3trf_A            5 LTNIYLIGLMGAGKTSVGSQLAKL   28 (185)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHH
Confidence            457999999999999999999754

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=97.25  E-value=0.00012  Score=52.11  Aligned_cols=23  Identities=22%  Similarity=0.124  Sum_probs=20.6

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      -.++++|+.|||||||++.+++.
T Consensus        23 e~~~liG~nGsGKSTLl~~l~Gl   45 (208)
T 3b85_A           23 TIVFGLGPAGSGKTYLAMAKAVQ   45 (208)
T ss_dssp             SEEEEECCTTSSTTHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcC
Confidence            35899999999999999999874

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=97.25  E-value=0.00017  Score=53.60  Aligned_cols=23  Identities=26%  Similarity=0.328  Sum_probs=21.2

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      -.++++|+.|||||||++.|++-
T Consensus        46 e~~~i~G~nGsGKSTLlk~l~Gl   68 (271)
T 2ixe_A           46 KVTALVGPNGSGKSTVAALLQNL   68 (271)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTS
T ss_pred             CEEEEECCCCCCHHHHHHHHhcC
Confidence            46899999999999999999986

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=97.25  E-value=0.00018  Score=52.83  Aligned_cols=23  Identities=26%  Similarity=0.329  Sum_probs=21.1

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      -.++++|+.|||||||++.+++-
T Consensus        30 e~~~l~G~nGsGKSTLlk~l~Gl   52 (250)
T 2d2e_A           30 EVHALMGPNGAGKSTLGKILAGD   52 (250)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHTC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            46899999999999999999985

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=97.25  E-value=0.00018  Score=52.80  Aligned_cols=23  Identities=22%  Similarity=0.418  Sum_probs=21.1

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      -.++++|+.|||||||++.+.+-
T Consensus        27 e~~~liG~NGsGKSTLlk~l~Gl   49 (249)
T 2qi9_C           27 EILHLVGPNGAGKSTLLARMAGM   49 (249)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTTS
T ss_pred             CEEEEECCCCCcHHHHHHHHhCC
Confidence            36899999999999999999986

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=97.24  E-value=0.00018  Score=53.02  Aligned_cols=24  Identities=17%  Similarity=0.285  Sum_probs=21.5

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      --.++++|+.|||||||++.|++-
T Consensus        41 Gei~~l~G~NGsGKSTLlk~l~Gl   64 (256)
T 1vpl_A           41 GEIFGLIGPNGAGKTTTLRIISTL   64 (256)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred             CcEEEEECCCCCCHHHHHHHHhcC
Confidence            346899999999999999999986

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=97.24  E-value=0.0002  Score=51.40  Aligned_cols=23  Identities=30%  Similarity=0.569  Sum_probs=20.6

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      ..|+++|++||||||+.+.|.+.
T Consensus         6 ~~i~i~G~~GsGKSTl~~~L~~~   28 (227)
T 1cke_A            6 PVITIDGPSGAGKGTLCKAMAEA   28 (227)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            57999999999999999998763

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=97.24  E-value=0.00018  Score=53.27  Aligned_cols=23  Identities=26%  Similarity=0.345  Sum_probs=21.2

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      -.++++|+.|||||||++.+++-
T Consensus        47 e~~~l~G~NGsGKSTLlk~l~Gl   69 (267)
T 2zu0_C           47 EVHAIMGPNGSGKSTLSATLAGR   69 (267)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHTC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            46899999999999999999985

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=97.23  E-value=0.00018  Score=50.76  Aligned_cols=25  Identities=32%  Similarity=0.254  Sum_probs=21.6

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      ....|+++|++||||||+++.|.+.
T Consensus        24 ~g~~i~l~G~sGsGKSTl~~~La~~   48 (200)
T 3uie_A           24 KGCVIWVTGLSGSGKSTLACALNQM   48 (200)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            3457999999999999999998875

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=97.22  E-value=0.00026  Score=56.72  Aligned_cols=25  Identities=28%  Similarity=0.266  Sum_probs=21.9

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      ....|+++|.+|+||||+.+.|...
T Consensus        38 ~~~~IvlvGlpGsGKSTia~~La~~   62 (469)
T 1bif_A           38 CPTLIVMVGLPARGKTYISKKLTRY   62 (469)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHH
Confidence            4557999999999999999999864

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=97.22  E-value=0.00019  Score=53.54  Aligned_cols=23  Identities=26%  Similarity=0.411  Sum_probs=21.1

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      -.++++|+.|||||||++.+++-
T Consensus        48 e~~~liG~NGsGKSTLlk~l~Gl   70 (279)
T 2ihy_A           48 DKWILYGLNGAGKTTLLNILNAY   70 (279)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTTS
T ss_pred             CEEEEECCCCCcHHHHHHHHhCC
Confidence            46899999999999999999986

>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.22  E-value=0.0025  Score=51.65  Aligned_cols=24  Identities=13%  Similarity=0.356  Sum_probs=21.6

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      ...+++.|++|+|||+++..+...
T Consensus        77 ~~~lLL~GppGtGKTtla~~la~~  100 (516)
T 1sxj_A           77 FRAAMLYGPPGIGKTTAAHLVAQE  100 (516)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHH
Confidence            457999999999999999999875

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=97.21  E-value=0.00016  Score=50.72  Aligned_cols=22  Identities=18%  Similarity=0.487  Sum_probs=20.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 029158           23 EIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        23 ~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      .++++|++|+|||||++.+++.
T Consensus         3 ~i~i~G~nG~GKTTll~~l~g~   24 (189)
T 2i3b_A            3 HVFLTGPPGVGKTTLIHKASEV   24 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHH
T ss_pred             EEEEECCCCChHHHHHHHHHhh
Confidence            5899999999999999999875

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=97.21  E-value=0.0002  Score=52.66  Aligned_cols=23  Identities=30%  Similarity=0.453  Sum_probs=21.1

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      -.++++|+.|||||||++.+.+-
T Consensus        32 e~~~l~G~nGsGKSTLl~~l~Gl   54 (253)
T 2nq2_C           32 DILAVLGQNGCGKSTLLDLLLGI   54 (253)
T ss_dssp             CEEEEECCSSSSHHHHHHHHTTS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            36899999999999999999986

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=97.20  E-value=0.003  Score=46.12  Aligned_cols=25  Identities=16%  Similarity=0.223  Sum_probs=21.8

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      ....+++.|++|+|||+++.++.+.
T Consensus        38 ~~~~vll~G~~GtGKT~la~~la~~   62 (262)
T 2qz4_A           38 VPKGALLLGPPGCGKTLLAKAVATE   62 (262)
T ss_dssp             CCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHH
Confidence            3456899999999999999999875

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.20  E-value=0.00071  Score=53.40  Aligned_cols=23  Identities=17%  Similarity=0.394  Sum_probs=21.1

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      .-|++.||||+|||+|+.++.+.
T Consensus       207 rGiLL~GPPGtGKT~lakAiA~~  229 (428)
T 4b4t_K          207 RGVLLYGPPGTGKTMLVKAVANS  229 (428)
T ss_dssp             CEEEEESCTTTTHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHH
Confidence            45999999999999999999986

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=97.19  E-value=0.00021  Score=52.96  Aligned_cols=24  Identities=25%  Similarity=0.335  Sum_probs=21.5

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      --.++++|+.|||||||++.+.+-
T Consensus        33 Ge~~~liG~nGsGKSTLl~~i~Gl   56 (266)
T 2yz2_A           33 GECLLVAGNTGSGKSTLLQIVAGL   56 (266)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCC
Confidence            346899999999999999999986

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=97.19  E-value=0.0003  Score=48.66  Aligned_cols=24  Identities=33%  Similarity=0.645  Sum_probs=21.0

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      .+.|+++|++|+||||+.+.|...
T Consensus        11 ~~~i~i~G~~GsGKst~~~~l~~~   34 (180)
T 3iij_A           11 LPNILLTGTPGVGKTTLGKELASK   34 (180)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEeCCCCCHHHHHHHHHHH
Confidence            456999999999999999998753

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=97.19  E-value=0.00026  Score=48.64  Aligned_cols=25  Identities=12%  Similarity=0.274  Sum_probs=21.2

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      ..+.++++|++|||||||+.+|...
T Consensus         3 ~~~~i~i~G~sGsGKTTl~~~L~~~   27 (169)
T 1xjc_A            3 AMNVWQVVGYKHSGKTTLMEKWVAA   27 (169)
T ss_dssp             -CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHh
Confidence            3567999999999999999998753

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=97.19  E-value=0.0002  Score=50.52  Aligned_cols=22  Identities=23%  Similarity=0.433  Sum_probs=20.2

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhc
Q 029158           22 PEIAFAGRSNVGKSSMLNALTR   43 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~   43 (198)
                      .+|+++|++||||||+.+.|.+
T Consensus         2 ~~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            2 KRIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHH
Confidence            4799999999999999999976

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=97.19  E-value=0.00016  Score=50.00  Aligned_cols=24  Identities=25%  Similarity=0.391  Sum_probs=21.5

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      ...+++.|++|+|||||++.+++.
T Consensus        38 g~~~~l~G~~G~GKTtL~~~i~~~   61 (180)
T 3ec2_A           38 GKGLTFVGSPGVGKTHLAVATLKA   61 (180)
T ss_dssp             CCEEEECCSSSSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHH
Confidence            456899999999999999999875

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=97.18  E-value=0.00024  Score=50.25  Aligned_cols=22  Identities=23%  Similarity=0.372  Sum_probs=20.1

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhc
Q 029158           22 PEIAFAGRSNVGKSSMLNALTR   43 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~   43 (198)
                      ..|+++|++||||||+.+.|.+
T Consensus         3 ~~i~l~G~~GsGKST~~~~La~   24 (206)
T 1jjv_A            3 YIVGLTGGIGSGKTTIANLFTD   24 (206)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999976

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=97.17  E-value=0.00022  Score=49.10  Aligned_cols=23  Identities=35%  Similarity=0.551  Sum_probs=20.6

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      ..|+++|++||||||+.+.|...
T Consensus         5 ~~i~i~G~~GsGKsTla~~La~~   27 (175)
T 1via_A            5 KNIVFIGFMGSGKSTLARALAKD   27 (175)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHH
Confidence            46999999999999999999764

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=97.17  E-value=0.00013  Score=52.64  Aligned_cols=24  Identities=25%  Similarity=0.333  Sum_probs=16.1

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHh-cC
Q 029158           21 LPEIAFAGRSNVGKSSMLNALT-RQ   44 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~-~~   44 (198)
                      ...++++|++|||||||++.|. +.
T Consensus        27 G~ii~l~Gp~GsGKSTl~~~L~~~~   51 (231)
T 3lnc_A           27 GVILVLSSPSGCGKTTVANKLLEKQ   51 (231)
T ss_dssp             CCEEEEECSCC----CHHHHHHC--
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhcC
Confidence            3468999999999999999999 64

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=97.17  E-value=0.00022  Score=49.67  Aligned_cols=23  Identities=26%  Similarity=0.281  Sum_probs=20.5

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      ..|++.|++||||||+.+.|...
T Consensus         2 ~~I~i~G~~GsGKsT~~~~L~~~   24 (194)
T 1nks_A            2 KIGIVTGIPGVGKSTVLAKVKEI   24 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999999999764

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.17  E-value=0.00068  Score=53.57  Aligned_cols=24  Identities=21%  Similarity=0.209  Sum_probs=21.8

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      ..-|++.||||+|||+|+.++.+.
T Consensus       215 prGvLLyGPPGTGKTllAkAiA~e  238 (434)
T 4b4t_M          215 PKGALMYGPPGTGKTLLARACAAQ  238 (434)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CCeeEEECcCCCCHHHHHHHHHHH
Confidence            456999999999999999999986

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=97.17  E-value=0.00013  Score=55.07  Aligned_cols=24  Identities=38%  Similarity=0.473  Sum_probs=21.6

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      --.++++|++|||||||++.|++-
T Consensus        80 Ge~vaivG~sGsGKSTLl~ll~gl  103 (306)
T 3nh6_A           80 GQTLALVGPSGAGKSTILRLLFRF  103 (306)
T ss_dssp             TCEEEEESSSCHHHHHHHHHHTTS
T ss_pred             CCEEEEECCCCchHHHHHHHHHcC
Confidence            347999999999999999999986

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=97.16  E-value=0.00027  Score=49.30  Aligned_cols=24  Identities=25%  Similarity=0.368  Sum_probs=20.9

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      ...|+++|++||||||+.+.|...
T Consensus         5 ~~~I~l~G~~GsGKST~~~~L~~~   28 (193)
T 2rhm_A            5 PALIIVTGHPATGKTTLSQALATG   28 (193)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            356899999999999999998764

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=97.15  E-value=0.00025  Score=52.42  Aligned_cols=24  Identities=21%  Similarity=0.396  Sum_probs=21.7

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      --.++++|+.|||||||++.+++.
T Consensus        30 Ge~~~i~G~NGsGKSTLlk~l~Gl   53 (263)
T 2pjz_A           30 GEKVIILGPNGSGKTTLLRAISGL   53 (263)
T ss_dssp             SSEEEEECCTTSSHHHHHHHHTTS
T ss_pred             CEEEEEECCCCCCHHHHHHHHhCC
Confidence            446899999999999999999986

>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}

Probab=97.15  E-value=0.0036  Score=47.46  Aligned_cols=25  Identities=8%  Similarity=0.090  Sum_probs=22.0

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      ..+.+.+.|+||+|||++++.++..
T Consensus        44 ~~~~lli~GpPGTGKT~~v~~v~~~   68 (318)
T 3te6_A           44 QNKLFYITNADDSTKFQLVNDVMDE   68 (318)
T ss_dssp             CCCEEEEECCCSHHHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHH
Confidence            4567899999999999999999865

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=97.12  E-value=0.00027  Score=49.00  Aligned_cols=23  Identities=26%  Similarity=0.476  Sum_probs=20.3

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      +.|+++|.+||||||+.+.|...
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~   25 (184)
T 2iyv_A            3 PKAVLVGLPGSGKSTIGRRLAKA   25 (184)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            46999999999999999998753

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=97.11  E-value=0.00031  Score=49.38  Aligned_cols=22  Identities=27%  Similarity=0.520  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 029158           23 EIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        23 ~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      .|+++|.+||||||+.+.|...
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~~   23 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISKK   23 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCccCHHHHHHHHHHh
Confidence            5899999999999999999864

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=97.11  E-value=0.00043  Score=48.75  Aligned_cols=25  Identities=16%  Similarity=0.259  Sum_probs=21.3

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      ....|+++|++||||||+.+.|...
T Consensus        19 ~~~~I~l~G~~GsGKST~a~~La~~   43 (201)
T 2cdn_A           19 SHMRVLLLGPPGAGKGTQAVKLAEK   43 (201)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            3457999999999999999998753

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=97.11  E-value=0.00028  Score=53.49  Aligned_cols=25  Identities=32%  Similarity=0.238  Sum_probs=21.9

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      ....|+++|++|||||||++.|.+.
T Consensus        89 ~g~ivgI~G~sGsGKSTL~~~L~gl  113 (312)
T 3aez_A           89 VPFIIGVAGSVAVGKSTTARVLQAL  113 (312)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCchHHHHHHHHHhh
Confidence            4457999999999999999999875

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=97.10  E-value=0.00025  Score=54.68  Aligned_cols=23  Identities=26%  Similarity=0.400  Sum_probs=21.0

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      -.++++|++|||||||++.+.+-
T Consensus        31 e~~~llGpsGsGKSTLLr~iaGl   53 (359)
T 3fvq_A           31 EILFIIGASGCGKTTLLRCLAGF   53 (359)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CEEEEECCCCchHHHHHHHHhcC
Confidence            46899999999999999999986

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=97.09  E-value=0.00033  Score=49.26  Aligned_cols=26  Identities=23%  Similarity=0.208  Sum_probs=22.3

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           19 PDLPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        19 ~~~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      .....|+++|++||||||+.+.|...
T Consensus         6 ~~~~~I~i~G~~GsGKST~~~~La~~   31 (203)
T 1uf9_A            6 KHPIIIGITGNIGSGKSTVAALLRSW   31 (203)
T ss_dssp             CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHHC
Confidence            34567999999999999999998764

>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A

Probab=97.09  E-value=0.001  Score=48.98  Aligned_cols=64  Identities=6%  Similarity=-0.082  Sum_probs=38.5

Q ss_pred             CCceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhh--CCcEEEEEeccC
Q 029158           66 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERS--QTKYQVVLTKTD  143 (198)
Q Consensus        66 ~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~--~~p~iiv~nK~D  143 (198)
                      .+++.++|||+...            ......+.   .+|.+++++.+..........+++.+...  +.++.+|+|+.+
T Consensus       144 ~yD~viiD~pp~~~------------~~~~~~l~---~aD~vivv~~~~~~s~~~~~~~~~~l~~~~~~~~~~vv~N~~~  208 (267)
T 3k9g_A          144 KYDYIVIDTNPSLD------------VTLKNALL---CSDYVIIPMTAEKWAVESLDLFNFFVRKLNLFLPIFLIITRFK  208 (267)
T ss_dssp             TCSEEEEEECSSCS------------HHHHHHHT---TCSEEEEEEESCTTHHHHHHHHHHHHHTTTCCCCEEEEEEEEC
T ss_pred             CCCEEEEECcCCcc------------HHHHHHHH---HCCeEEEEeCCChHHHHHHHHHHHHHHHHhccCCEEEEEeccc
Confidence            35789999997432            11122222   38999999988642111123345555554  457889999995


Q ss_pred             C
Q 029158          144 T  144 (198)
Q Consensus       144 l  144 (198)
                      .
T Consensus       209 ~  209 (267)
T 3k9g_A          209 K  209 (267)
T ss_dssp             T
T ss_pred             C
Confidence            3

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=97.09  E-value=0.00038  Score=52.11  Aligned_cols=25  Identities=20%  Similarity=0.383  Sum_probs=21.4

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      ....|+++|++||||||+.+.|...
T Consensus        32 ~~~livl~G~sGsGKSTla~~L~~~   56 (287)
T 1gvn_B           32 SPTAFLLGGQPGSGKTSLRSAIFEE   56 (287)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            3456899999999999999999764

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=97.09  E-value=0.00026  Score=54.66  Aligned_cols=22  Identities=27%  Similarity=0.379  Sum_probs=20.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 029158           23 EIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        23 ~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      .++++|++|||||||++.+++.
T Consensus       125 ~i~I~GptGSGKTTlL~~l~g~  146 (356)
T 3jvv_A          125 LVLVTGPTGSGKSTTLAAMLDY  146 (356)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhc
Confidence            7999999999999999999864

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=97.08  E-value=0.00034  Score=48.61  Aligned_cols=23  Identities=13%  Similarity=0.212  Sum_probs=20.4

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      ..|++.|++||||||+.+.|...
T Consensus         4 ~~I~i~G~~GsGKsT~~~~L~~~   26 (192)
T 1kht_A            4 KVVVVTGVPGVGSTTSSQLAMDN   26 (192)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            46999999999999999998763

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=97.08  E-value=0.00041  Score=48.24  Aligned_cols=25  Identities=16%  Similarity=0.235  Sum_probs=21.2

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      +...|+++|.+||||||+.+.|...
T Consensus         5 ~~~~I~l~G~~GsGKsT~~~~L~~~   29 (194)
T 1qf9_A            5 KPNVVFVLGGPGSGKGTQCANIVRD   29 (194)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             cCcEEEEECCCCCCHHHHHHHHHHH
Confidence            3457999999999999999998753

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=97.07  E-value=0.00024  Score=50.91  Aligned_cols=23  Identities=17%  Similarity=0.218  Sum_probs=20.5

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      -.++++|++|||||||++.+++.
T Consensus        26 ~~~~l~G~nGsGKSTll~~l~g~   48 (231)
T 4a74_A           26 AITEVFGEFGSGKTQLAHTLAVM   48 (231)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            35899999999999999999873

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=97.07  E-value=0.0003  Score=52.75  Aligned_cols=23  Identities=30%  Similarity=0.485  Sum_probs=21.2

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      -.++++|+.|||||||++.+++.
T Consensus        65 e~~~i~G~NGsGKSTLlk~l~Gl   87 (290)
T 2bbs_A           65 QLLAVAGSTGAGKTSLLMMIMGE   87 (290)
T ss_dssp             CEEEEEESTTSSHHHHHHHHTTS
T ss_pred             CEEEEECCCCCcHHHHHHHHhcC
Confidence            46899999999999999999986

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=97.07  E-value=0.00039  Score=49.30  Aligned_cols=25  Identities=24%  Similarity=0.254  Sum_probs=21.5

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      ....|+++|.+||||||+.+.|...
T Consensus         8 ~~~~I~l~G~~GsGKsT~~~~L~~~   32 (215)
T 1nn5_A            8 RGALIVLEGVDRAGKSTQSRKLVEA   32 (215)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHH
Confidence            3457999999999999999999753

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=97.06  E-value=0.00027  Score=54.65  Aligned_cols=23  Identities=30%  Similarity=0.579  Sum_probs=21.3

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      ..++++|++|||||||++.|++.
T Consensus       176 ~~i~ivG~sGsGKSTll~~l~~~  198 (361)
T 2gza_A          176 RVIVVAGETGSGKTTLMKALMQE  198 (361)
T ss_dssp             CCEEEEESSSSCHHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHHhc
Confidence            47999999999999999999986

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=97.05  E-value=0.00035  Score=53.99  Aligned_cols=24  Identities=21%  Similarity=0.264  Sum_probs=21.5

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      --.++++|++|||||||++.+.+-
T Consensus        54 Gei~~IiGpnGaGKSTLlr~i~GL   77 (366)
T 3tui_C           54 GQIYGVIGASGAGKSTLIRCVNLL   77 (366)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHHTS
T ss_pred             CCEEEEEcCCCchHHHHHHHHhcC
Confidence            346899999999999999999986

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=97.05  E-value=0.00031  Score=54.09  Aligned_cols=23  Identities=22%  Similarity=0.413  Sum_probs=21.0

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      -.++++|++|||||||++.+.+-
T Consensus        42 e~~~llGpnGsGKSTLLr~iaGl   64 (355)
T 1z47_A           42 EMVGLLGPSGSGKTTILRLIAGL   64 (355)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CEEEEECCCCCcHHHHHHHHhCC
Confidence            46899999999999999999986

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=97.05  E-value=0.00036  Score=49.99  Aligned_cols=24  Identities=13%  Similarity=0.270  Sum_probs=21.0

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      ...|+++|++||||||+.+.|...
T Consensus         5 ~~~I~l~G~~GsGKsT~~~~La~~   28 (222)
T 1zak_A            5 PLKVMISGAPASGKGTQCELIKTK   28 (222)
T ss_dssp             SCCEEEEESTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            457999999999999999998754

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=97.05  E-value=0.00028  Score=53.89  Aligned_cols=23  Identities=13%  Similarity=0.393  Sum_probs=21.1

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      ..++++|++|||||||++.|++.
T Consensus       172 ~~v~i~G~~GsGKTTll~~l~g~  194 (330)
T 2pt7_A          172 KNVIVCGGTGSGKTTYIKSIMEF  194 (330)
T ss_dssp             CCEEEEESTTSCHHHHHHHGGGG
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            36899999999999999999986

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=97.04  E-value=0.00041  Score=47.47  Aligned_cols=23  Identities=22%  Similarity=0.340  Sum_probs=20.3

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      ..|+++|.+||||||+.+.|...
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~   25 (173)
T 1e6c_A            3 EPIFMVGARGCGMTTVGRELARA   25 (173)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHH
Confidence            46999999999999999998753

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=97.04  E-value=0.00035  Score=50.95  Aligned_cols=25  Identities=20%  Similarity=0.234  Sum_probs=21.5

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      ....|+++|+.|||||||++.|.+.
T Consensus        24 ~g~iigI~G~~GsGKSTl~k~L~~~   48 (245)
T 2jeo_A           24 RPFLIGVSGGTASGKSTVCEKIMEL   48 (245)
T ss_dssp             CSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHH
Confidence            3457999999999999999998763

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=97.04  E-value=0.00033  Score=54.41  Aligned_cols=23  Identities=30%  Similarity=0.507  Sum_probs=21.0

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      -.++++|++|||||||++.+.+-
T Consensus        30 e~~~llGpsGsGKSTLLr~iaGl   52 (381)
T 3rlf_A           30 EFVVFVGPSGCGKSTLLRMIAGL   52 (381)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHTS
T ss_pred             CEEEEEcCCCchHHHHHHHHHcC
Confidence            46899999999999999999986

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=97.04  E-value=0.00023  Score=47.96  Aligned_cols=25  Identities=32%  Similarity=0.282  Sum_probs=21.9

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      ....++++|++|+|||||++.+++.
T Consensus        35 ~g~~~~l~G~~G~GKTtL~~~i~~~   59 (149)
T 2kjq_A           35 HGQFIYVWGEEGAGKSHLLQAWVAQ   59 (149)
T ss_dssp             CCSEEEEESSSTTTTCHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHH
Confidence            3456899999999999999999885

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=97.04  E-value=0.00053  Score=50.28  Aligned_cols=23  Identities=35%  Similarity=0.498  Sum_probs=20.7

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHh
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALT   42 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~   42 (198)
                      ....|+++|++||||||+++.|.
T Consensus        26 ~g~~I~I~G~~GsGKSTl~k~La   48 (252)
T 4e22_A           26 IAPVITVDGPSGAGKGTLCKALA   48 (252)
T ss_dssp             TSCEEEEECCTTSSHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHH
Confidence            34579999999999999999998

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=97.03  E-value=0.00038  Score=49.59  Aligned_cols=22  Identities=18%  Similarity=0.394  Sum_probs=19.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 029158           23 EIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        23 ~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      +|+++|++||||||+.+.|...
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~   23 (216)
T 3fb4_A            2 NIVLMGLPGAGKGTQAEQIIEK   23 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999998653

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=97.03  E-value=0.0004  Score=48.18  Aligned_cols=22  Identities=23%  Similarity=0.462  Sum_probs=19.9

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhc
Q 029158           22 PEIAFAGRSNVGKSSMLNALTR   43 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~   43 (198)
                      ..|+++|++||||||+.+.|..
T Consensus         5 ~~I~l~G~~GsGKST~~~~La~   26 (186)
T 3cm0_A            5 QAVIFLGPPGAGKGTQASRLAQ   26 (186)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999975

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=97.03  E-value=0.00035  Score=54.02  Aligned_cols=24  Identities=29%  Similarity=0.337  Sum_probs=21.4

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      --.++++|++|||||||++.+.+-
T Consensus        29 Ge~~~llGpnGsGKSTLLr~iaGl   52 (362)
T 2it1_A           29 GEFMALLGPSGSGKSTLLYTIAGI   52 (362)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHHTS
T ss_pred             CCEEEEECCCCchHHHHHHHHhcC
Confidence            346899999999999999999986

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=97.03  E-value=0.00034  Score=54.00  Aligned_cols=24  Identities=29%  Similarity=0.279  Sum_probs=21.4

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      --.++++|++|||||||++.+.+-
T Consensus        29 Ge~~~llGpnGsGKSTLLr~iaGl   52 (359)
T 2yyz_A           29 GEFVALLGPSGCGKTTTLLMLAGI   52 (359)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CCEEEEEcCCCchHHHHHHHHHCC
Confidence            346899999999999999999986

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=97.02  E-value=0.00055  Score=47.57  Aligned_cols=25  Identities=16%  Similarity=0.197  Sum_probs=21.6

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      ....|+++|.+||||||+++.|...
T Consensus        12 ~~~~i~l~G~~GsGKsT~~~~L~~~   36 (186)
T 2yvu_A           12 KGIVVWLTGLPGSGKTTIATRLADL   36 (186)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence            4457899999999999999998764

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=97.01  E-value=0.00048  Score=48.12  Aligned_cols=24  Identities=17%  Similarity=0.250  Sum_probs=21.0

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      ...|+++|++||||||+.+.|...
T Consensus         9 ~~~I~l~G~~GsGKsT~~~~La~~   32 (196)
T 2c95_A            9 TNIIFVVGGPGSGKGTQCEKIVQK   32 (196)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHH
Confidence            457999999999999999998753

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=97.01  E-value=0.00043  Score=51.87  Aligned_cols=26  Identities=23%  Similarity=0.114  Sum_probs=22.1

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           19 PDLPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        19 ~~~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      .....|+++|++|||||||++.|.+.
T Consensus        29 ~~~~ii~I~G~sGsGKSTla~~L~~~   54 (290)
T 1odf_A           29 KCPLFIFFSGPQGSGKSFTSIQIYNH   54 (290)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            34567999999999999999988764

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=97.01  E-value=0.00041  Score=48.96  Aligned_cols=25  Identities=24%  Similarity=0.387  Sum_probs=21.6

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhc
Q 029158           19 PDLPEIAFAGRSNVGKSSMLNALTR   43 (198)
Q Consensus        19 ~~~~~v~~vG~~~~GKSsli~~l~~   43 (198)
                      .....|+++|++|||||||++.|.+
T Consensus        20 ~~~~~i~i~G~~GsGKstl~~~l~~   44 (201)
T 1rz3_A           20 AGRLVLGIDGLSRSGKTTLANQLSQ   44 (201)
T ss_dssp             SSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3456799999999999999999876

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=97.01  E-value=0.00043  Score=49.80  Aligned_cols=24  Identities=21%  Similarity=0.353  Sum_probs=20.9

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      ...|+++|++||||||+.+.|...
T Consensus         7 ~~~I~l~G~~GsGKsT~a~~La~~   30 (227)
T 1zd8_A            7 LLRAVIMGAPGSGKGTVSSRITTH   30 (227)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHH
Confidence            467999999999999999998743

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=97.01  E-value=0.00027  Score=54.73  Aligned_cols=24  Identities=29%  Similarity=0.426  Sum_probs=21.8

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      ..+++++|++|||||||++.|.+.
T Consensus       170 g~k~~IvG~nGsGKSTLlk~L~gl  193 (365)
T 1lw7_A          170 AKTVAILGGESSGKSVLVNKLAAV  193 (365)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred             hCeEEEECCCCCCHHHHHHHHHHH
Confidence            458999999999999999999876

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=97.00  E-value=0.00049  Score=48.71  Aligned_cols=24  Identities=29%  Similarity=0.267  Sum_probs=21.1

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      ...|++.|.+||||||+.+.|...
T Consensus        10 ~~~I~l~G~~GsGKST~~~~L~~~   33 (212)
T 2wwf_A           10 GKFIVFEGLDRSGKSTQSKLLVEY   33 (212)
T ss_dssp             SCEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHH
Confidence            457999999999999999999763

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=97.00  E-value=0.00042  Score=49.36  Aligned_cols=22  Identities=14%  Similarity=0.330  Sum_probs=19.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 029158           23 EIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        23 ~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      +|+++|++||||||+.+.|...
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~   23 (216)
T 3dl0_A            2 NLVLMGLPGAGKGTQGERIVEK   23 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999999653

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=97.00  E-value=0.00037  Score=54.07  Aligned_cols=23  Identities=22%  Similarity=0.335  Sum_probs=21.0

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      -.++++|++|||||||++.+.+-
T Consensus        30 e~~~llGpnGsGKSTLLr~iaGl   52 (372)
T 1g29_1           30 EFMILLGPSGCGKTTTLRMIAGL   52 (372)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CEEEEECCCCcHHHHHHHHHHcC
Confidence            46899999999999999999986

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=96.99  E-value=0.00038  Score=53.96  Aligned_cols=24  Identities=21%  Similarity=0.277  Sum_probs=21.4

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      --.++++|++|||||||++.+.+-
T Consensus        37 Ge~~~llGpnGsGKSTLLr~iaGl   60 (372)
T 1v43_A           37 GEFLVLLGPSGCGKTTTLRMIAGL   60 (372)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHHTS
T ss_pred             CCEEEEECCCCChHHHHHHHHHcC
Confidence            346899999999999999999986

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=96.99  E-value=0.00035  Score=54.27  Aligned_cols=23  Identities=22%  Similarity=0.326  Sum_probs=20.7

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      -.++++|++|||||||++.|++.
T Consensus       137 ~~i~ivG~~GsGKTTll~~l~~~  159 (372)
T 2ewv_A          137 GLILVTGPTGSGKSTTIASMIDY  159 (372)
T ss_dssp             EEEEEECSSSSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHhh
Confidence            46999999999999999999864

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=96.99  E-value=0.00053  Score=49.01  Aligned_cols=24  Identities=17%  Similarity=0.284  Sum_probs=21.0

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      ...|+++|++||||||+.+.|...
T Consensus         4 ~~~I~l~G~~GsGKsT~a~~La~~   27 (220)
T 1aky_A            4 SIRMVLIGPPGAGKGTQAPNLQER   27 (220)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHH
Confidence            357999999999999999998754

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.98  E-value=0.0016  Score=51.30  Aligned_cols=24  Identities=21%  Similarity=0.343  Sum_probs=21.7

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      ..-|++.||||+|||+|+.++.+.
T Consensus       216 prGvLLyGPPGTGKTlLAkAiA~e  239 (437)
T 4b4t_I          216 PKGVILYGAPGTGKTLLAKAVANQ  239 (437)
T ss_dssp             CSEEEEESSTTTTHHHHHHHHHHH
T ss_pred             CCCCceECCCCchHHHHHHHHHHH
Confidence            356999999999999999999986

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=96.98  E-value=0.00049  Score=52.28  Aligned_cols=26  Identities=31%  Similarity=0.231  Sum_probs=21.7

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           19 PDLPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        19 ~~~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      .....|+++|++|||||||++.|.+.
T Consensus        90 ~~p~iigI~GpsGSGKSTl~~~L~~l  115 (321)
T 3tqc_A           90 KVPYIIGIAGSVAVGKSTTSRVLKAL  115 (321)
T ss_dssp             CCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            34557999999999999999988654

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=96.98  E-value=0.00064  Score=47.82  Aligned_cols=24  Identities=21%  Similarity=0.272  Sum_probs=21.4

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      ...|+++|.+||||||+.+.|...
T Consensus         4 ~~~I~l~G~~GsGKsT~~~~L~~~   27 (204)
T 2v54_A            4 GALIVFEGLDKSGKTTQCMNIMES   27 (204)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHH
Confidence            357999999999999999999875

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=96.98  E-value=0.00035  Score=51.92  Aligned_cols=21  Identities=24%  Similarity=0.496  Sum_probs=20.0

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 029158           24 IAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        24 v~~vG~~~~GKSsli~~l~~~   44 (198)
                      ++++|++|+|||||++.+.+.
T Consensus        47 vlL~Gp~GtGKTtLakala~~   67 (274)
T 2x8a_A           47 VLLAGPPGCGKTLLAKAVANE   67 (274)
T ss_dssp             EEEESSTTSCHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHH
Confidence            999999999999999999886

>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.97  E-value=0.0013  Score=52.31  Aligned_cols=24  Identities=21%  Similarity=0.271  Sum_probs=21.7

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      ..-|++.|+||+|||+|+.++.+.
T Consensus       243 prGILLyGPPGTGKTlLAkAiA~e  266 (467)
T 4b4t_H          243 PKGILLYGPPGTGKTLCARAVANR  266 (467)
T ss_dssp             CSEEEECSCTTSSHHHHHHHHHHH
T ss_pred             CCceEeeCCCCCcHHHHHHHHHhc
Confidence            456999999999999999999886

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=96.95  E-value=0.00057  Score=49.80  Aligned_cols=25  Identities=20%  Similarity=0.222  Sum_probs=21.6

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      ....|+++|++||||||+.+.|...
T Consensus        28 ~~~~I~l~G~~GsGKsT~a~~L~~~   52 (243)
T 3tlx_A           28 PDGRYIFLGAPGSGKGTQSLNLKKS   52 (243)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHH
Confidence            4567999999999999999999753

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=96.95  E-value=0.00068  Score=48.56  Aligned_cols=24  Identities=21%  Similarity=0.266  Sum_probs=20.5

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      .+.|+++|+|||||+|....|...
T Consensus        29 ~kiI~llGpPGsGKgTqa~~L~~~   52 (217)
T 3umf_A           29 AKVIFVLGGPGSGKGTQCEKLVQK   52 (217)
T ss_dssp             CEEEEEECCTTCCHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHH
Confidence            345778999999999999999875

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=96.95  E-value=0.00052  Score=50.55  Aligned_cols=23  Identities=30%  Similarity=0.476  Sum_probs=20.6

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhc
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTR   43 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~   43 (198)
                      .+.|+++|.+||||||+.+.|..
T Consensus         4 ~~lIvl~G~pGSGKSTla~~La~   26 (260)
T 3a4m_A            4 IMLIILTGLPGVGKSTFSKNLAK   26 (260)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHH
Confidence            45799999999999999999875

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=96.95  E-value=0.00047  Score=52.10  Aligned_cols=25  Identities=32%  Similarity=0.255  Sum_probs=21.7

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      ....|+++|++|||||||++.|.+.
T Consensus        79 ~g~iigI~G~~GsGKSTl~~~L~~~  103 (308)
T 1sq5_A           79 IPYIISIAGSVAVGKSTTARVLQAL  103 (308)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHH
Confidence            3457999999999999999998874

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=96.94  E-value=0.00054  Score=48.41  Aligned_cols=23  Identities=39%  Similarity=0.368  Sum_probs=20.6

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      ..|++.|.+||||||+.+.|...
T Consensus         5 ~~I~i~G~~GsGKsT~~~~L~~~   27 (213)
T 2plr_A            5 VLIAFEGIDGSGKSSQATLLKDW   27 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHH
Confidence            46999999999999999999764

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=96.94  E-value=0.00052  Score=47.80  Aligned_cols=23  Identities=13%  Similarity=0.219  Sum_probs=20.1

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      ..|+++|.+||||||+.+.|...
T Consensus         4 ~~I~l~G~~GsGKsT~a~~L~~~   26 (196)
T 1tev_A            4 LVVFVLGGPGAGKGTQCARIVEK   26 (196)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999999988753

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=96.93  E-value=0.0027  Score=47.40  Aligned_cols=24  Identities=17%  Similarity=0.285  Sum_probs=21.5

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      ...+++.|++|+|||++++++.+.
T Consensus        54 ~~~vll~Gp~GtGKT~la~~la~~   77 (297)
T 3b9p_A           54 AKGLLLFGPPGNGKTLLARAVATE   77 (297)
T ss_dssp             CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHH
Confidence            457999999999999999999875

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=96.93  E-value=0.00052  Score=50.36  Aligned_cols=22  Identities=18%  Similarity=0.237  Sum_probs=19.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 029158           23 EIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        23 ~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      .|+++|++|||||||...|...
T Consensus         3 li~I~G~~GSGKSTla~~La~~   24 (253)
T 2ze6_A            3 LHLIYGPTCSGKTDMAIQIAQE   24 (253)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHhc
Confidence            5899999999999999998754

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=96.92  E-value=0.00044  Score=50.58  Aligned_cols=22  Identities=23%  Similarity=0.480  Sum_probs=20.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 029158           23 EIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        23 ~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      -++++|++|+|||||++.+.+.
T Consensus        51 g~ll~G~~G~GKTtl~~~i~~~   72 (254)
T 1ixz_A           51 GVLLVGPPGVGKTHLARAVAGE   72 (254)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            3999999999999999999875

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=96.92  E-value=0.00042  Score=47.90  Aligned_cols=24  Identities=29%  Similarity=0.380  Sum_probs=16.7

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      ...|++.|.+||||||+.+.|...
T Consensus         5 ~~~I~l~G~~GsGKST~a~~La~~   28 (183)
T 2vli_A            5 SPIIWINGPFGVGKTHTAHTLHER   28 (183)
T ss_dssp             CCEEEEECCC----CHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHh
Confidence            357999999999999999998753

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=96.91  E-value=0.00064  Score=51.27  Aligned_cols=24  Identities=25%  Similarity=0.338  Sum_probs=20.8

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhc
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTR   43 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~   43 (198)
                      ..-.++++|+.||||||+++.|.+
T Consensus        99 ~g~vi~lvG~nGsGKTTll~~Lag  122 (302)
T 3b9q_A           99 KPAVIMIVGVNGGGKTTSLGKLAH  122 (302)
T ss_dssp             SCEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHH
Confidence            344789999999999999999885

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=96.91  E-value=0.00041  Score=54.66  Aligned_cols=23  Identities=30%  Similarity=0.309  Sum_probs=20.6

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      -.++++|++|||||||++.+++.
T Consensus       168 gii~I~GpnGSGKTTlL~allg~  190 (418)
T 1p9r_A          168 GIILVTGPTGSGKSTTLYAGLQE  190 (418)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHhh
Confidence            36899999999999999999874

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=96.91  E-value=0.0023  Score=47.49  Aligned_cols=24  Identities=21%  Similarity=0.325  Sum_probs=21.3

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      ...+++.|++|+|||+|++++.+.
T Consensus        51 ~~~~ll~G~~GtGKT~la~~la~~   74 (285)
T 3h4m_A           51 PKGILLYGPPGTGKTLLAKAVATE   74 (285)
T ss_dssp             CSEEEEESSSSSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHH
Confidence            456999999999999999999875

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=96.89  E-value=0.00046  Score=55.84  Aligned_cols=22  Identities=27%  Similarity=0.400  Sum_probs=20.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 029158           23 EIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        23 ~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      .++++|++|||||||++.|++.
T Consensus       262 ~i~I~GptGSGKTTlL~aL~~~  283 (511)
T 2oap_1          262 SAIVVGETASGKTTTLNAIMMF  283 (511)
T ss_dssp             CEEEEESTTSSHHHHHHHHGGG
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            5999999999999999999875

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=96.89  E-value=0.00067  Score=48.97  Aligned_cols=26  Identities=19%  Similarity=0.318  Sum_probs=22.0

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           19 PDLPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        19 ~~~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      .....|++.|+.||||||+++.|.+.
T Consensus        18 ~~g~~i~i~G~~GsGKSTl~~~L~~~   43 (230)
T 2vp4_A           18 TQPFTVLIEGNIGSGKTTYLNHFEKY   43 (230)
T ss_dssp             CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhc
Confidence            34457999999999999999998764

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=96.89  E-value=0.00053  Score=53.54  Aligned_cols=24  Identities=33%  Similarity=0.553  Sum_probs=21.4

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      --.++++|++|||||||++.+.+-
T Consensus        47 Ge~~~llGpsGsGKSTLLr~iaGl   70 (390)
T 3gd7_A           47 GQRVGLLGRTGSGKSTLLSAFLRL   70 (390)
T ss_dssp             TCEEEEEESTTSSHHHHHHHHHTC
T ss_pred             CCEEEEECCCCChHHHHHHHHhCC
Confidence            346899999999999999999985

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=96.89  E-value=0.00032  Score=53.90  Aligned_cols=23  Identities=17%  Similarity=0.287  Sum_probs=21.1

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      -.++++|++|||||||++.+.+-
T Consensus        27 e~~~llGpnGsGKSTLLr~iaGl   49 (348)
T 3d31_A           27 EYFVILGPTGAGKTLFLELIAGF   49 (348)
T ss_dssp             CEEEEECCCTHHHHHHHHHHHTS
T ss_pred             CEEEEECCCCccHHHHHHHHHcC
Confidence            46899999999999999999986

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=96.88  E-value=0.00068  Score=46.13  Aligned_cols=22  Identities=32%  Similarity=0.356  Sum_probs=19.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 029158           23 EIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        23 ~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      +|++.|.+||||||+.+.|...
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~   23 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSRS   23 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999998763

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=96.88  E-value=0.00064  Score=47.57  Aligned_cols=24  Identities=21%  Similarity=0.253  Sum_probs=21.0

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      ...|+++|++||||||+.+.|...
T Consensus        12 ~~~I~l~G~~GsGKsT~a~~L~~~   35 (199)
T 2bwj_A           12 CKIIFIIGGPGSGKGTQCEKLVEK   35 (199)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHH
Confidence            357999999999999999998764

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=96.87  E-value=0.00061  Score=48.53  Aligned_cols=22  Identities=18%  Similarity=0.315  Sum_probs=19.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 029158           23 EIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        23 ~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      +|+++|++||||||+.+.|...
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~   23 (214)
T 1e4v_A            2 RIILLGAPVAGKGTQAQFIMEK   23 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999998753

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=96.85  E-value=0.00086  Score=48.44  Aligned_cols=24  Identities=17%  Similarity=0.239  Sum_probs=21.2

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      ...|+++|.+||||||+.+.|...
T Consensus        16 ~~~I~l~G~~GsGKsT~a~~La~~   39 (233)
T 1ak2_A           16 GVRAVLLGPPGAGKGTQAPKLAKN   39 (233)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            457999999999999999998754

>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*

Probab=96.85  E-value=0.003  Score=45.39  Aligned_cols=41  Identities=10%  Similarity=-0.082  Sum_probs=29.3

Q ss_pred             eEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCC
Q 029158          106 RVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF  146 (198)
Q Consensus       106 ~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~  146 (198)
                      .-++++|..+-+.....+.+..+...++++|+++-..|-..
T Consensus        90 ~dvViIDEaQ~l~~~~ve~l~~L~~~gi~Vil~Gl~~df~~  130 (223)
T 2b8t_A           90 TKVIGIDEVQFFDDRICEVANILAENGFVVIISGLDKNFKG  130 (223)
T ss_dssp             CCEEEECSGGGSCTHHHHHHHHHHHTTCEEEEECCSBCTTS
T ss_pred             CCEEEEecCccCcHHHHHHHHHHHhCCCeEEEEeccccccC
Confidence            45778898775554445556665556899999999998654

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=96.84  E-value=0.00051  Score=50.35  Aligned_cols=25  Identities=20%  Similarity=0.365  Sum_probs=21.6

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      ....|+++|++||||||+.+.|...
T Consensus        31 ~~~~i~l~G~~GsGKSTla~~L~~~   55 (253)
T 2p5t_B           31 QPIAILLGGQSGAGKTTIHRIKQKE   55 (253)
T ss_dssp             SCEEEEEESCGGGTTHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHh
Confidence            3457999999999999999999764

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=96.84  E-value=0.00057  Score=48.83  Aligned_cols=24  Identities=13%  Similarity=0.304  Sum_probs=20.9

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      ...|+++|.+||||||+.+.|...
T Consensus         5 ~~~I~l~G~~GsGKsT~a~~La~~   28 (217)
T 3be4_A            5 KHNLILIGAPGSGKGTQCEFIKKE   28 (217)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHH
Confidence            357999999999999999998754

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=96.84  E-value=0.0021  Score=48.79  Aligned_cols=24  Identities=25%  Similarity=0.354  Sum_probs=21.4

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      ...|++.|++|+|||+|+.++.+.
T Consensus        45 ~~~iLL~GppGtGKT~la~ala~~   68 (322)
T 1xwi_A           45 WRGILLFGPPGTGKSYLAKAVATE   68 (322)
T ss_dssp             CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred             CceEEEECCCCccHHHHHHHHHHH
Confidence            356999999999999999999875

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=96.84  E-value=0.0007  Score=48.11  Aligned_cols=22  Identities=23%  Similarity=0.475  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 029158           23 EIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        23 ~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      +|+++|+|||||+|....|...
T Consensus         2 ~Iil~GpPGsGKgTqa~~La~~   23 (206)
T 3sr0_A            2 ILVFLGPPGAGKGTQAKRLAKE   23 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5889999999999999999875

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=96.83  E-value=0.006  Score=51.89  Aligned_cols=25  Identities=20%  Similarity=0.295  Sum_probs=22.4

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      ...-|++.|+||+|||+|++++++.
T Consensus       237 ~p~GILL~GPPGTGKT~LAraiA~e  261 (806)
T 3cf2_A          237 PPRGILLYGPPGTGKTLIARAVANE  261 (806)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHTT
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHH
Confidence            3456999999999999999999987

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=96.79  E-value=0.00083  Score=46.74  Aligned_cols=21  Identities=33%  Similarity=0.449  Sum_probs=19.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 029158           23 EIAFAGRSNVGKSSMLNALTR   43 (198)
Q Consensus        23 ~v~~vG~~~~GKSsli~~l~~   43 (198)
                      .|++.|.+||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~   22 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYE   22 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999976

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=96.79  E-value=0.00032  Score=54.09  Aligned_cols=24  Identities=17%  Similarity=0.317  Sum_probs=21.4

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      --.++++|++|||||||++.+.+-
T Consensus        31 Ge~~~llGpnGsGKSTLLr~iaGl   54 (353)
T 1oxx_K           31 GERFGILGPSGAGKTTFMRIIAGL   54 (353)
T ss_dssp             TCEEEEECSCHHHHHHHHHHHHTS
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCC
Confidence            346899999999999999999986

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=96.78  E-value=0.00064  Score=49.80  Aligned_cols=24  Identities=17%  Similarity=0.342  Sum_probs=21.1

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      ...+++.|++|+|||||++++.+.
T Consensus        45 ~~~vll~G~~GtGKT~la~~la~~   68 (257)
T 1lv7_A           45 PKGVLMVGPPGTGKTLLAKAIAGE   68 (257)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHH
Confidence            345999999999999999999875

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=96.78  E-value=0.001  Score=45.87  Aligned_cols=24  Identities=21%  Similarity=0.466  Sum_probs=21.1

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      ...+++.|++|+|||+|+..+...
T Consensus        43 ~~~~ll~G~~G~GKT~l~~~~~~~   66 (195)
T 1jbk_A           43 KNNPVLIGEPGVGKTAIVEGLAQR   66 (195)
T ss_dssp             SCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHHHH
Confidence            456899999999999999998865

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=96.78  E-value=0.00089  Score=47.73  Aligned_cols=23  Identities=30%  Similarity=0.374  Sum_probs=20.4

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhc
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTR   43 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~   43 (198)
                      ...|+++|.+||||||+.+.|..
T Consensus         4 ~~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            4 RYIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999999875

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=96.77  E-value=0.00085  Score=49.08  Aligned_cols=26  Identities=23%  Similarity=0.258  Sum_probs=21.6

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           19 PDLPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        19 ~~~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      .....|++.|++||||||+.+.|...
T Consensus        20 ~~~~iI~I~G~~GSGKST~a~~L~~~   45 (252)
T 1uj2_A           20 GEPFLIGVSGGTASGKSSVCAKIVQL   45 (252)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHH
Confidence            34567999999999999999988663

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=96.77  E-value=0.00066  Score=50.39  Aligned_cols=21  Identities=24%  Similarity=0.515  Sum_probs=19.9

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 029158           24 IAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        24 v~~vG~~~~GKSsli~~l~~~   44 (198)
                      ++++|++|+|||||++.+.+.
T Consensus        76 vll~Gp~GtGKTtl~~~i~~~   96 (278)
T 1iy2_A           76 VLLVGPPGVGKTHLARAVAGE   96 (278)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCcChHHHHHHHHHHH
Confidence            899999999999999999875

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=96.77  E-value=0.00075  Score=46.64  Aligned_cols=21  Identities=29%  Similarity=0.306  Sum_probs=19.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 029158           23 EIAFAGRSNVGKSSMLNALTR   43 (198)
Q Consensus        23 ~v~~vG~~~~GKSsli~~l~~   43 (198)
                      ..+++|+.|+|||||+.++..
T Consensus        28 ~~~i~G~NGsGKStll~ai~~   48 (182)
T 3kta_A           28 FTAIVGANGSGKSNIGDAILF   48 (182)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            679999999999999999864

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=96.76  E-value=0.0008  Score=46.42  Aligned_cols=23  Identities=26%  Similarity=0.307  Sum_probs=20.3

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      ..|+++|.+||||||+.+.|...
T Consensus         6 ~~i~l~G~~GsGKST~~~~L~~~   28 (179)
T 2pez_A            6 CTVWLTGLSGAGKTTVSMALEEY   28 (179)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999999998764

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=96.75  E-value=0.001  Score=45.40  Aligned_cols=25  Identities=24%  Similarity=0.347  Sum_probs=20.7

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      ....|++.|.+||||||+.+.|...
T Consensus         6 ~~~~i~l~G~~GsGKSTva~~La~~   30 (168)
T 1zuh_A            6 HMQHLVLIGFMGSGKSSLAQELGLA   30 (168)
T ss_dssp             --CEEEEESCTTSSHHHHHHHHHHH
T ss_pred             ccceEEEECCCCCCHHHHHHHHHHH
Confidence            4568999999999999999998753

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=96.75  E-value=0.00032  Score=49.78  Aligned_cols=22  Identities=27%  Similarity=0.466  Sum_probs=19.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 029158           23 EIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        23 ~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      .|+++|++||||||+++.|...
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~~   23 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSGA   23 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            5899999999999999998754

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=96.74  E-value=0.00095  Score=47.91  Aligned_cols=22  Identities=23%  Similarity=0.311  Sum_probs=19.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 029158           23 EIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        23 ~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      .|++.|++||||||+.+.|...
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~~   23 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKDK   23 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999998753

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=96.74  E-value=0.001  Score=48.13  Aligned_cols=24  Identities=33%  Similarity=0.419  Sum_probs=20.6

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhc
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTR   43 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~   43 (198)
                      ....|++.|++||||||+.+.|..
T Consensus         8 ~~~~i~i~G~~GsGKsTla~~la~   31 (233)
T 3r20_A            8 GSLVVAVDGPAGTGKSSVSRGLAR   31 (233)
T ss_dssp             -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            346799999999999999998874

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=96.74  E-value=0.00063  Score=54.31  Aligned_cols=25  Identities=28%  Similarity=0.478  Sum_probs=22.0

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      .-.+++++|+.|||||||++.|++-
T Consensus       137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl  161 (460)
T 2npi_A          137 EGPRVVIVGGSQTGKTSLSRTLCSY  161 (460)
T ss_dssp             SCCCEEEEESTTSSHHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCc
Confidence            3467999999999999999999875

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=96.74  E-value=0.001  Score=51.37  Aligned_cols=24  Identities=25%  Similarity=0.338  Sum_probs=20.8

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhc
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTR   43 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~   43 (198)
                      ..-.++++|+.||||||+++.|.+
T Consensus       156 ~g~vi~lvG~nGsGKTTll~~Lag  179 (359)
T 2og2_A          156 KPAVIMIVGVNGGGKTTSLGKLAH  179 (359)
T ss_dssp             SSEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCChHHHHHHHHHh
Confidence            344789999999999999999885

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=96.74  E-value=0.00069  Score=51.75  Aligned_cols=23  Identities=17%  Similarity=0.494  Sum_probs=20.7

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      ..+++.|++|+|||||++.+.+.
T Consensus        52 ~~~ll~Gp~G~GKTTLa~~ia~~   74 (334)
T 1in4_A           52 DHVLLAGPPGLGKTTLAHIIASE   74 (334)
T ss_dssp             CCEEEESSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHH
Confidence            45899999999999999999875

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=96.73  E-value=0.0011  Score=49.45  Aligned_cols=23  Identities=35%  Similarity=0.430  Sum_probs=20.7

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHh
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALT   42 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~   42 (198)
                      ....|+++|.+||||||+.+.|.
T Consensus        74 ~~~iI~I~G~~GSGKSTva~~La   96 (281)
T 2f6r_A           74 GLYVLGLTGISGSGKSSVAQRLK   96 (281)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHH
Confidence            45679999999999999999987

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=96.72  E-value=0.00086  Score=49.14  Aligned_cols=24  Identities=17%  Similarity=0.259  Sum_probs=21.1

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      ...|+++|++||||||+.+.|.+.
T Consensus        48 g~~i~l~G~~GsGKSTl~~~La~~   71 (250)
T 3nwj_A           48 GRSMYLVGMMGSGKTTVGKIMARS   71 (250)
T ss_dssp             TCCEEEECSTTSCHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHh
Confidence            457999999999999999999763

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=96.69  E-value=0.0011  Score=50.25  Aligned_cols=24  Identities=29%  Similarity=0.459  Sum_probs=21.0

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      .+.|+++|++|||||||...|...
T Consensus         5 ~~~i~i~GptGsGKTtla~~La~~   28 (323)
T 3crm_A            5 PPAIFLMGPTAAGKTDLAMALADA   28 (323)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHH
Confidence            347999999999999999998864

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=96.68  E-value=0.00095  Score=47.76  Aligned_cols=22  Identities=23%  Similarity=0.231  Sum_probs=19.6

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhc
Q 029158           22 PEIAFAGRSNVGKSSMLNALTR   43 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~   43 (198)
                      -.++++|++|+|||||+..+++
T Consensus        24 ~~~~i~G~~GsGKTtl~~~l~~   45 (235)
T 2w0m_A           24 FFIALTGEPGTGKTIFSLHFIA   45 (235)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHH
Confidence            3589999999999999999884

>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*

Probab=96.68  E-value=0.0074  Score=43.97  Aligned_cols=64  Identities=8%  Similarity=0.062  Sum_probs=36.8

Q ss_pred             CCceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhC---------CcEE
Q 029158           66 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQ---------TKYQ  136 (198)
Q Consensus        66 ~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~---------~p~i  136 (198)
                      .+++.++|||+....            .....+.   .+|.++++++.+.........+++.+...+         ..+-
T Consensus       113 ~yD~viiD~p~~~~~------------~~~~~l~---~ad~vi~v~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~~~~  177 (260)
T 3q9l_A          113 DFEFIVCDSPAGIET------------GALMALY---FADEAIITTNPEVSSVRDSDRILGILASKSRRAENGEEPIKEH  177 (260)
T ss_dssp             TCSEEEEECCSSSSH------------HHHHHHH---TCSEEEEEECSSHHHHHHHHHHHHHHTTSSHHHHTTCSCCEEE
T ss_pred             CCCEEEEcCCCCCCH------------HHHHHHH---hCCEEEEEecCChhHHHHHHHHHHHHHHhccccccccCCcceE
Confidence            567899999874221            1111222   389999998886321112233444444322         4678


Q ss_pred             EEEeccCC
Q 029158          137 VVLTKTDT  144 (198)
Q Consensus       137 iv~nK~Dl  144 (198)
                      +|+|+.|.
T Consensus       178 ~v~N~~~~  185 (260)
T 3q9l_A          178 LLLTRYNP  185 (260)
T ss_dssp             EEEEEECH
T ss_pred             EEEecCCc
Confidence            99999984

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=96.65  E-value=0.0014  Score=46.10  Aligned_cols=22  Identities=27%  Similarity=0.347  Sum_probs=19.9

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhc
Q 029158           22 PEIAFAGRSNVGKSSMLNALTR   43 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~   43 (198)
                      +.|++.|++||||||+.+.|..
T Consensus         3 ~~i~i~G~~GsGKst~~~~la~   24 (208)
T 3ake_A            3 GIVTIDGPSASGKSSVARRVAA   24 (208)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            3799999999999999999875

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=96.62  E-value=0.0014  Score=47.11  Aligned_cols=25  Identities=16%  Similarity=0.340  Sum_probs=21.7

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      ....+++.|++|+|||+|+..+...
T Consensus        51 ~~~~~ll~G~~G~GKT~la~~l~~~   75 (242)
T 3bos_A           51 GVQAIYLWGPVKSGRTHLIHAACAR   75 (242)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHH
Confidence            3567999999999999999998764

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=96.61  E-value=0.0013  Score=49.27  Aligned_cols=22  Identities=23%  Similarity=0.200  Sum_probs=19.9

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhc
Q 029158           22 PEIAFAGRSNVGKSSMLNALTR   43 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~   43 (198)
                      ..|+++|++||||||+.+.|..
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~   24 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIA   24 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999876

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=96.60  E-value=0.0013  Score=46.76  Aligned_cols=24  Identities=33%  Similarity=0.302  Sum_probs=20.9

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      ...|+++|.+||||||+.+.|...
T Consensus        25 ~~~i~~~G~~GsGKsT~~~~l~~~   48 (211)
T 1m7g_A           25 GLTIWLTGLSASGKSTLAVELEHQ   48 (211)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHH
Confidence            356899999999999999998764

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=96.59  E-value=0.0014  Score=46.11  Aligned_cols=23  Identities=26%  Similarity=0.457  Sum_probs=20.9

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      ..+++.|++|+|||+|+.++.+.
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~   77 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANE   77 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            67999999999999999998875

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=96.58  E-value=0.0014  Score=50.16  Aligned_cols=23  Identities=17%  Similarity=0.299  Sum_probs=20.5

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      +.|+++|++|||||||...|...
T Consensus         8 ~lI~I~GptgSGKTtla~~La~~   30 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAKK   30 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ceEEEECCCcCcHHHHHHHHHHH
Confidence            47999999999999999988764

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}

Probab=96.58  E-value=0.012  Score=46.81  Aligned_cols=23  Identities=17%  Similarity=0.400  Sum_probs=21.1

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      +.+++.|++|+|||||++.+.+.
T Consensus        51 ~~vLL~GppGtGKTtlAr~ia~~   73 (447)
T 3pvs_A           51 HSMILWGPPGTGKTTLAEVIARY   73 (447)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             cEEEEECCCCCcHHHHHHHHHHH
Confidence            57999999999999999999875

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=96.58  E-value=0.00098  Score=49.89  Aligned_cols=23  Identities=26%  Similarity=0.316  Sum_probs=20.3

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      -.++++|++|+|||||+..+++.
T Consensus        36 ~~~~i~G~~G~GKTTl~~~ia~~   58 (296)
T 1cr0_A           36 EVIMVTSGSGMGKSTFVRQQALQ   58 (296)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHH
Confidence            35899999999999999998864

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=96.58  E-value=0.0011  Score=54.45  Aligned_cols=23  Identities=39%  Similarity=0.605  Sum_probs=21.3

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      -.++++|++|||||||++.+++-
T Consensus       370 ~~~~ivG~sGsGKSTLl~~l~g~  392 (582)
T 3b60_A          370 KTVALVGRSGSGKSTIASLITRF  392 (582)
T ss_dssp             CEEEEEECTTSSHHHHHHHHTTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhhc
Confidence            47999999999999999999986

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=96.58  E-value=0.0012  Score=45.44  Aligned_cols=24  Identities=21%  Similarity=0.385  Sum_probs=21.0

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      ...+++.|++|+|||+|+..+...
T Consensus        43 ~~~vll~G~~G~GKT~la~~~~~~   66 (187)
T 2p65_A           43 KNNPILLGDPGVGKTAIVEGLAIK   66 (187)
T ss_dssp             SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHHHH
Confidence            456899999999999999998764

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=96.57  E-value=0.0013  Score=46.17  Aligned_cols=26  Identities=23%  Similarity=0.332  Sum_probs=22.4

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           19 PDLPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        19 ~~~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      .+...|+++|.+||||||+.+.|...
T Consensus        10 ~~~~iIgltG~~GSGKSTva~~L~~~   35 (192)
T 2grj_A           10 HHHMVIGVTGKIGTGKSTVCEILKNK   35 (192)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHHh
Confidence            45678999999999999999998753

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=96.57  E-value=0.0025  Score=49.09  Aligned_cols=23  Identities=26%  Similarity=0.400  Sum_probs=20.6

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      ..|++.|++|+|||+|+.++...
T Consensus        85 ~~iLL~GppGtGKT~la~ala~~  107 (355)
T 2qp9_X           85 SGILLYGPPGTGKSYLAKAVATE  107 (355)
T ss_dssp             CCEEEECSTTSCHHHHHHHHHHH
T ss_pred             ceEEEECCCCCcHHHHHHHHHHH
Confidence            35899999999999999999875

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=96.55  E-value=0.0013  Score=54.15  Aligned_cols=24  Identities=42%  Similarity=0.548  Sum_probs=21.6

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      .-.++++|++|||||||++.+++-
T Consensus       369 G~~~~ivG~sGsGKSTll~~l~g~  392 (582)
T 3b5x_A          369 GKTVALVGRSGSGKSTIANLFTRF  392 (582)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcC
Confidence            347899999999999999999986

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=96.54  E-value=0.0019  Score=46.57  Aligned_cols=25  Identities=24%  Similarity=0.417  Sum_probs=21.8

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      ....|++.|++||||||+++.|...
T Consensus        25 ~g~~i~i~G~~GsGKsT~~~~l~~~   49 (229)
T 4eaq_A           25 MSAFITFEGPEGSGKTTVINEVYHR   49 (229)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence            4457999999999999999999875

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=96.54  E-value=0.0018  Score=48.85  Aligned_cols=25  Identities=20%  Similarity=0.239  Sum_probs=21.3

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      ..+.|+++|++|+|||||...|...
T Consensus         9 ~~~~i~i~GptgsGKt~la~~La~~   33 (316)
T 3foz_A            9 LPKAIFLMGPTASGKTALAIELRKI   33 (316)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCcEEEEECCCccCHHHHHHHHHHh
Confidence            3456889999999999999999865

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=96.54  E-value=0.0057  Score=47.12  Aligned_cols=24  Identities=21%  Similarity=0.277  Sum_probs=21.4

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      ...|++.|++|+|||+|+.++...
T Consensus       117 ~~~vLl~GppGtGKT~la~aia~~  140 (357)
T 3d8b_A          117 PKGILLFGPPGTGKTLIGKCIASQ  140 (357)
T ss_dssp             CSEEEEESSTTSSHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHH
Confidence            456999999999999999999875

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=96.54  E-value=0.0014  Score=53.37  Aligned_cols=24  Identities=25%  Similarity=0.333  Sum_probs=21.6

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      --.++++|+.|||||||++.|.+.
T Consensus        47 Ge~~~LvG~NGaGKSTLlk~l~Gl   70 (538)
T 1yqt_A           47 GMVVGIVGPNGTGKSTAVKILAGQ   70 (538)
T ss_dssp             TSEEEEECCTTSSHHHHHHHHHTS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            346899999999999999999986

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=96.53  E-value=0.0012  Score=46.82  Aligned_cols=22  Identities=14%  Similarity=0.027  Sum_probs=19.8

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhc
Q 029158           22 PEIAFAGRSNVGKSSMLNALTR   43 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~   43 (198)
                      -.++++|++|+|||||+..++.
T Consensus        21 ~~~~i~G~~GsGKTtl~~~l~~   42 (220)
T 2cvh_A           21 VLTQVYGPYASGKTTLALQTGL   42 (220)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            3589999999999999999976

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=96.53  E-value=0.012  Score=44.50  Aligned_cols=22  Identities=23%  Similarity=0.327  Sum_probs=18.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 029158           23 EIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        23 ~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      -+++.|++|+|||+++.++.+.
T Consensus        50 ~~L~~G~~G~GKT~la~~la~~   71 (324)
T 3u61_B           50 IILHSPSPGTGKTTVAKALCHD   71 (324)
T ss_dssp             EEEECSSTTSSHHHHHHHHHHH
T ss_pred             EEEeeCcCCCCHHHHHHHHHHH
Confidence            3566677999999999999875

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=96.52  E-value=0.0013  Score=52.67  Aligned_cols=22  Identities=18%  Similarity=0.359  Sum_probs=20.2

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhc
Q 029158           22 PEIAFAGRSNVGKSSMLNALTR   43 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~   43 (198)
                      -.++++|+.|||||||++.|.+
T Consensus        30 e~~~liG~nGsGKSTLl~~l~G   51 (483)
T 3euj_A           30 LVTTLSGGNGAGKSTTMAGFVT   51 (483)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCcHHHHHHHHhc
Confidence            5789999999999999999885

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=96.51  E-value=0.0016  Score=43.68  Aligned_cols=21  Identities=33%  Similarity=0.436  Sum_probs=18.6

Q ss_pred             CeEEEEcCCCCCHHHHHHHHh
Q 029158           22 PEIAFAGRSNVGKSSMLNALT   42 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~   42 (198)
                      ...+++|+.|+|||||+.++.
T Consensus        24 g~~~I~G~NGsGKStil~Ai~   44 (149)
T 1f2t_A           24 GINLIIGQNGSGKSSLLDAIL   44 (149)
T ss_dssp             EEEEEECCTTSSHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHH
Confidence            357899999999999999976

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=96.51  E-value=0.0016  Score=50.54  Aligned_cols=24  Identities=25%  Similarity=0.293  Sum_probs=21.0

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      ...++++|++|+|||||++.+.+.
T Consensus       169 ~~~i~l~G~~GsGKSTl~~~l~~~  192 (377)
T 1svm_A          169 KRYWLFKGPIDSGKTTLAAALLEL  192 (377)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhh
Confidence            347899999999999999998864

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=96.51  E-value=0.0011  Score=54.61  Aligned_cols=24  Identities=38%  Similarity=0.535  Sum_probs=21.6

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      .-.++++|++|||||||++.+.+-
T Consensus       367 G~~~~ivG~sGsGKSTll~~l~g~  390 (578)
T 4a82_A          367 GETVAFVGMSGGGKSTLINLIPRF  390 (578)
T ss_dssp             TCEEEEECSTTSSHHHHHTTTTTS
T ss_pred             CCEEEEECCCCChHHHHHHHHhcC
Confidence            347999999999999999999986

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}

Probab=96.51  E-value=0.0059  Score=47.56  Aligned_cols=24  Identities=17%  Similarity=0.292  Sum_probs=21.4

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      ...|++.|++|+|||+|+.++...
T Consensus       148 ~~~vLL~GppGtGKT~la~aia~~  171 (389)
T 3vfd_A          148 ARGLLLFGPPGNGKTMLAKAVAAE  171 (389)
T ss_dssp             CSEEEEESSTTSCHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHh
Confidence            457999999999999999999765

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=96.49  E-value=0.0014  Score=47.31  Aligned_cols=23  Identities=17%  Similarity=0.260  Sum_probs=20.5

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      -.++++|++|+|||||+..++..
T Consensus        25 ~~~~i~G~~GsGKTtl~~~l~~~   47 (243)
T 1n0w_A           25 SITEMFGEFRTGKTQICHTLAVT   47 (243)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCcHHHHHHHHHHH
Confidence            36899999999999999999873

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=96.48  E-value=0.0012  Score=54.40  Aligned_cols=24  Identities=29%  Similarity=0.501  Sum_probs=21.8

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      .-.++++|++|||||||++.+++-
T Consensus       381 G~~~~ivG~sGsGKSTll~~l~g~  404 (598)
T 3qf4_B          381 GQKVALVGPTGSGKTTIVNLLMRF  404 (598)
T ss_dssp             TCEEEEECCTTSSTTHHHHHHTTS
T ss_pred             CCEEEEECCCCCcHHHHHHHHhcC
Confidence            347999999999999999999986

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=96.45  E-value=0.0016  Score=50.44  Aligned_cols=20  Identities=30%  Similarity=0.511  Sum_probs=18.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHh
Q 029158           23 EIAFAGRSNVGKSSMLNALT   42 (198)
Q Consensus        23 ~v~~vG~~~~GKSsli~~l~   42 (198)
                      ..+++|+.|||||||+++++
T Consensus        25 ~~~i~G~NGaGKTTll~ai~   44 (365)
T 3qf7_A           25 ITVVEGPNGAGKSSLFEAIS   44 (365)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHH
Confidence            47799999999999999987

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=96.44  E-value=0.0014  Score=54.06  Aligned_cols=23  Identities=30%  Similarity=0.546  Sum_probs=21.3

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      -.++++|++|||||||++.+.+-
T Consensus       370 e~~~ivG~sGsGKSTll~~l~g~  392 (587)
T 3qf4_A          370 SLVAVLGETGSGKSTLMNLIPRL  392 (587)
T ss_dssp             CEEEEECSSSSSHHHHHHTTTTS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            47999999999999999999986

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=96.43  E-value=0.0019  Score=45.47  Aligned_cols=23  Identities=30%  Similarity=0.394  Sum_probs=20.9

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      ..|+++|++|+|||+|...|...
T Consensus        35 ~~ilI~GpsGsGKStLA~~La~~   57 (205)
T 2qmh_A           35 LGVLITGDSGVGKSETALELVQR   57 (205)
T ss_dssp             EEEEEECCCTTTTHHHHHHHHTT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHh
Confidence            46899999999999999999875

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=96.43  E-value=0.0015  Score=50.15  Aligned_cols=23  Identities=30%  Similarity=0.443  Sum_probs=21.4

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      -+++++|+.|+|||||++.+.+.
T Consensus        72 q~~gIiG~nGaGKTTLl~~I~g~   94 (347)
T 2obl_A           72 QRIGIFAGSGVGKSTLLGMICNG   94 (347)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcC
Confidence            47999999999999999999986

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=96.41  E-value=0.0022  Score=48.11  Aligned_cols=26  Identities=15%  Similarity=0.331  Sum_probs=21.6

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           19 PDLPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        19 ~~~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      .....+++.|++|+|||+++..+...
T Consensus        65 ~~~~~vll~G~~GtGKT~la~~la~~   90 (309)
T 3syl_A           65 TPTLHMSFTGNPGTGKTTVALKMAGL   90 (309)
T ss_dssp             CCCCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHH
Confidence            34557999999999999999877754

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=96.41  E-value=0.0017  Score=52.88  Aligned_cols=23  Identities=26%  Similarity=0.541  Sum_probs=21.1

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      -.++++|+.|||||||++.|.+.
T Consensus        26 ei~gLiGpNGaGKSTLlkiL~Gl   48 (538)
T 3ozx_A           26 TILGVLGKNGVGKTTVLKILAGE   48 (538)
T ss_dssp             EEEEEECCTTSSHHHHHHHHTTS
T ss_pred             CEEEEECCCCCcHHHHHHHHhcC
Confidence            36899999999999999999986

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=96.40  E-value=0.0025  Score=42.44  Aligned_cols=23  Identities=13%  Similarity=0.131  Sum_probs=20.6

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      ..|++.|++|+|||+++..+...
T Consensus        25 ~~vll~G~~GtGKt~lA~~i~~~   47 (145)
T 3n70_A           25 IAVWLYGAPGTGRMTGARYLHQF   47 (145)
T ss_dssp             SCEEEESSTTSSHHHHHHHHHHS
T ss_pred             CCEEEECCCCCCHHHHHHHHHHh
Confidence            45899999999999999999765

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=96.39  E-value=0.0019  Score=53.30  Aligned_cols=24  Identities=25%  Similarity=0.440  Sum_probs=21.6

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      --.++++|+.|+|||||++.|.+.
T Consensus       103 Gei~~LvGpNGaGKSTLLkiL~Gl  126 (608)
T 3j16_B          103 GQVLGLVGTNGIGKSTALKILAGK  126 (608)
T ss_dssp             TSEEEEECCTTSSHHHHHHHHHTS
T ss_pred             CCEEEEECCCCChHHHHHHHHhcC
Confidence            346899999999999999999986

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=96.38  E-value=0.0014  Score=49.08  Aligned_cols=24  Identities=25%  Similarity=0.468  Sum_probs=18.1

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhc
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTR   43 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~   43 (198)
                      ..+.|++.|++||||||+.+.|..
T Consensus         4 ~~~iIgItG~sGSGKSTva~~L~~   27 (290)
T 1a7j_A            4 KHPIISVTGSSGAGTSTVKHTFDQ   27 (290)
T ss_dssp             TSCEEEEESCC---CCTHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            356799999999999999998875

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=96.37  E-value=0.0026  Score=48.56  Aligned_cols=23  Identities=22%  Similarity=0.339  Sum_probs=21.0

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      +.|+++|++|+|||||...|...
T Consensus        41 ~lIvI~GPTgsGKTtLa~~LA~~   63 (339)
T 3a8t_A           41 KLLVLMGATGTGKSRLSIDLAAH   63 (339)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTT
T ss_pred             ceEEEECCCCCCHHHHHHHHHHH
Confidence            46999999999999999999876

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=96.37  E-value=0.0028  Score=45.82  Aligned_cols=24  Identities=25%  Similarity=0.447  Sum_probs=21.1

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhc
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTR   43 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~   43 (198)
                      ....|+++|++||||||+.+.|..
T Consensus        15 ~~~~i~i~G~~gsGKst~~~~l~~   38 (236)
T 1q3t_A           15 KTIQIAIDGPASSGKSTVAKIIAK   38 (236)
T ss_dssp             CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            455799999999999999998875

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=96.35  E-value=0.0026  Score=45.72  Aligned_cols=27  Identities=26%  Similarity=0.353  Sum_probs=21.9

Q ss_pred             CCCCCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           18 APDLPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        18 ~~~~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      .....-|++.|.+||||||+++.|...
T Consensus        18 ~~~~~~i~~~G~~g~GKst~~~~l~~~   44 (223)
T 3ld9_A           18 GPGSMFITFEGIDGSGKTTQSHLLAEY   44 (223)
T ss_dssp             -CCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            344567899999999999999998754

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=96.35  E-value=0.0023  Score=47.92  Aligned_cols=23  Identities=22%  Similarity=0.183  Sum_probs=19.8

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      .-+++.|+||+|||+|+.++...
T Consensus        37 ~~lLl~GppGtGKT~la~aiA~~   59 (293)
T 3t15_A           37 LILGIWGGKGQGKSFQCELVFRK   59 (293)
T ss_dssp             SEEEEEECTTSCHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            35677799999999999999875

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=96.34  E-value=0.0021  Score=52.33  Aligned_cols=23  Identities=22%  Similarity=0.416  Sum_probs=21.0

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      -.++++|+.|||||||++.|++.
T Consensus       295 ei~~i~G~nGsGKSTLl~~l~Gl  317 (538)
T 3ozx_A          295 EIIGILGPNGIGKTTFARILVGE  317 (538)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTTS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            36899999999999999999986

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=96.33  E-value=0.0021  Score=53.08  Aligned_cols=24  Identities=21%  Similarity=0.324  Sum_probs=21.6

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      --.++++|+.|+|||||++.|.+.
T Consensus       117 Ge~~~LiG~NGsGKSTLlkiL~Gl  140 (607)
T 3bk7_A          117 GMVVGIVGPNGTGKTTAVKILAGQ  140 (607)
T ss_dssp             TSEEEEECCTTSSHHHHHHHHTTS
T ss_pred             CCEEEEECCCCChHHHHHHHHhCC
Confidence            346899999999999999999986

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=96.32  E-value=0.0026  Score=44.87  Aligned_cols=22  Identities=32%  Similarity=0.561  Sum_probs=19.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 029158           23 EIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        23 ~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      .+++.|++|+|||+|+..+...
T Consensus        40 ~~ll~G~~G~GKT~l~~~l~~~   61 (226)
T 2chg_A           40 HLLFSGPPGTGKTATAIALARD   61 (226)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            4999999999999999998764

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=96.32  E-value=0.0029  Score=48.63  Aligned_cols=27  Identities=19%  Similarity=0.229  Sum_probs=22.2

Q ss_pred             CCCCCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           18 APDLPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        18 ~~~~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      +...+.|+++|++|+||||+...|.+.
T Consensus        21 ~g~~~~i~l~G~~G~GKTTl~~~la~~   47 (359)
T 2ga8_A           21 DNYRVCVILVGSPGSGKSTIAEELCQI   47 (359)
T ss_dssp             TCSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             cCCeeEEEEECCCCCcHHHHHHHHHHH
Confidence            334567999999999999999887753

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=96.31  E-value=0.0026  Score=47.76  Aligned_cols=24  Identities=21%  Similarity=0.405  Sum_probs=21.2

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      ...|++.|++|+|||+|++++.+.
T Consensus        49 ~~~vLL~Gp~GtGKT~la~ala~~   72 (301)
T 3cf0_A           49 SKGVLFYGPPGCGKTLLAKAIANE   72 (301)
T ss_dssp             CSEEEEECSSSSSHHHHHHHHHHH
T ss_pred             CceEEEECCCCcCHHHHHHHHHHH
Confidence            346899999999999999999875

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.30  E-value=0.0024  Score=48.90  Aligned_cols=22  Identities=27%  Similarity=0.424  Sum_probs=19.9

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhc
Q 029158           22 PEIAFAGRSNVGKSSMLNALTR   43 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~   43 (198)
                      +.+++.|++|+||||+++.+.+
T Consensus        37 ~~~ll~Gp~G~GKTtl~~~la~   58 (354)
T 1sxj_E           37 PHLLLYGPNGTGKKTRCMALLE   58 (354)
T ss_dssp             CCEEEECSTTSSHHHHHHTHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            3499999999999999999877

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=96.29  E-value=0.002  Score=51.13  Aligned_cols=24  Identities=29%  Similarity=0.389  Sum_probs=21.7

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      --+++++|++|+|||||++.+.+.
T Consensus       157 Gq~~~IvG~sGsGKSTLl~~Iag~  180 (438)
T 2dpy_A          157 GQRMGLFAGSGVGKSVLLGMMARY  180 (438)
T ss_dssp             TCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcc
Confidence            347999999999999999999986

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=96.29  E-value=0.0021  Score=42.71  Aligned_cols=23  Identities=4%  Similarity=0.164  Sum_probs=20.7

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      ..|++.|++|+|||+++..+...
T Consensus        28 ~~vll~G~~GtGKt~lA~~i~~~   50 (143)
T 3co5_A           28 SPVFLTGEAGSPFETVARYFHKN   50 (143)
T ss_dssp             SCEEEEEETTCCHHHHHGGGCCT
T ss_pred             CcEEEECCCCccHHHHHHHHHHh
Confidence            45899999999999999999776

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=96.26  E-value=0.0025  Score=51.87  Aligned_cols=23  Identities=22%  Similarity=0.460  Sum_probs=21.3

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      -.++++|+.|||||||++.|++.
T Consensus       313 e~~~i~G~NGsGKSTLlk~l~Gl  335 (538)
T 1yqt_A          313 EVIGIVGPNGIGKTTFVKMLAGV  335 (538)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHTS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            46899999999999999999986

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=96.22  E-value=0.0023  Score=45.69  Aligned_cols=23  Identities=30%  Similarity=0.512  Sum_probs=20.2

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      ..+++.|++|+|||||+..+...
T Consensus        46 ~~~ll~G~~G~GKT~l~~~~~~~   68 (250)
T 1njg_A           46 HAYLFSGTRGVGKTSIARLLAKG   68 (250)
T ss_dssp             SEEEEECSTTSCHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            36899999999999999998764

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=96.22  E-value=0.003  Score=47.41  Aligned_cols=23  Identities=26%  Similarity=0.489  Sum_probs=20.3

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      ..+++.|++|+|||+++..+.+.
T Consensus        48 ~~~ll~G~~GtGKt~la~~la~~   70 (311)
T 4fcw_A           48 GSFLFLGPTGVGKTELAKTLAAT   70 (311)
T ss_dssp             EEEEEESCSSSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHHH
Confidence            36999999999999999988764

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=96.21  E-value=0.0026  Score=49.15  Aligned_cols=23  Identities=30%  Similarity=0.488  Sum_probs=20.7

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      +.+++.|++|+|||||++.+.+.
T Consensus        45 ~~~li~G~~G~GKTtl~~~l~~~   67 (389)
T 1fnn_A           45 PRATLLGRPGTGKTVTLRKLWEL   67 (389)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            37999999999999999998865

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=96.21  E-value=0.0017  Score=45.94  Aligned_cols=22  Identities=27%  Similarity=0.359  Sum_probs=19.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 029158           23 EIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        23 ~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      .+++.|+||+||||++.++++.
T Consensus        60 ~ili~GPPGtGKTt~a~ala~~   81 (212)
T 1tue_A           60 CLVFCGPANTGKSYFGMSFIHF   81 (212)
T ss_dssp             EEEEESCGGGCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999998887753

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=96.20  E-value=0.0022  Score=47.57  Aligned_cols=22  Identities=23%  Similarity=0.178  Sum_probs=19.7

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhc
Q 029158           22 PEIAFAGRSNVGKSSMLNALTR   43 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~   43 (198)
                      -.++++|++|+|||||+..++.
T Consensus        31 ~i~~i~G~~GsGKTtl~~~l~~   52 (279)
T 1nlf_A           31 TVGALVSPGGAGKSMLALQLAA   52 (279)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHH
Confidence            4689999999999999998885

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=96.20  E-value=0.0032  Score=47.56  Aligned_cols=23  Identities=26%  Similarity=0.408  Sum_probs=20.5

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      +.|+++|++|+|||||...|...
T Consensus         4 ~~i~i~GptgsGKt~la~~La~~   26 (322)
T 3exa_A            4 KLVAIVGPTAVGKTKTSVMLAKR   26 (322)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHT
T ss_pred             cEEEEECCCcCCHHHHHHHHHHh
Confidence            45889999999999999999865

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=96.20  E-value=0.0024  Score=46.98  Aligned_cols=25  Identities=28%  Similarity=0.508  Sum_probs=21.9

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      +...|++.|..||||||+++.|...
T Consensus        23 ~~~~I~ieG~~GsGKST~~~~L~~~   47 (263)
T 1p5z_B           23 RIKKISIEGNIAAGKSTFVNILKQL   47 (263)
T ss_dssp             CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHh
Confidence            3467999999999999999999765

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=96.19  E-value=0.0029  Score=52.26  Aligned_cols=23  Identities=22%  Similarity=0.460  Sum_probs=21.2

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      -.++++|+.|+|||||++.|.+.
T Consensus       383 ei~~i~G~NGsGKSTLlk~l~Gl  405 (607)
T 3bk7_A          383 EVIGIVGPNGIGKTTFVKMLAGV  405 (607)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHTS
T ss_pred             CEEEEECCCCCCHHHHHHHHhcC
Confidence            36899999999999999999986

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=96.18  E-value=0.0018  Score=58.20  Aligned_cols=24  Identities=33%  Similarity=0.450  Sum_probs=21.7

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      .-+|++||++|||||||++.|++-
T Consensus      1105 Ge~vaIVG~SGsGKSTL~~lL~rl 1128 (1321)
T 4f4c_A         1105 GQTLALVGPSGCGKSTVVALLERF 1128 (1321)
T ss_dssp             TCEEEEECSTTSSTTSHHHHHTTS
T ss_pred             CCEEEEECCCCChHHHHHHHHhcC
Confidence            348999999999999999999975

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=96.17  E-value=0.0031  Score=47.80  Aligned_cols=24  Identities=25%  Similarity=0.357  Sum_probs=21.1

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      ...+++.|++|+|||||+..+.+.
T Consensus        37 ~~~lll~G~~GtGKT~la~~i~~~   60 (324)
T 1l8q_A           37 YNPIFIYGSVGTGKTHLLQAAGNE   60 (324)
T ss_dssp             CSSEEEECSSSSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHH
Confidence            356899999999999999999875

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=96.16  E-value=0.019  Score=48.63  Aligned_cols=24  Identities=25%  Similarity=0.401  Sum_probs=21.1

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      ...++++|++|+|||+++..+...
T Consensus       207 ~~~vlL~G~~GtGKT~la~~la~~  230 (758)
T 1r6b_X          207 KNNPLLVGESGVGKTAIAEGLAWR  230 (758)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEcCCCCCHHHHHHHHHHH
Confidence            456899999999999999998864

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.13  E-value=0.0033  Score=48.00  Aligned_cols=23  Identities=39%  Similarity=0.693  Sum_probs=20.4

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      +.+++.|++|+||||++..+.+.
T Consensus        47 ~~~ll~Gp~G~GKTtla~~la~~   69 (340)
T 1sxj_C           47 PHLLFYGPPGTGKTSTIVALARE   69 (340)
T ss_dssp             CCEEEECSSSSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHH
Confidence            44899999999999999998875

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=96.13  E-value=0.012  Score=50.66  Aligned_cols=23  Identities=22%  Similarity=0.517  Sum_probs=20.5

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      ..++++|++|+|||+++..+...
T Consensus       192 ~~vlL~G~pG~GKT~la~~la~~  214 (854)
T 1qvr_A          192 NNPVLIGEPGVGKTAIVEGLAQR  214 (854)
T ss_dssp             CCCEEEECTTSCHHHHHHHHHHH
T ss_pred             CceEEEcCCCCCHHHHHHHHHHH
Confidence            45899999999999999999875

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=96.13  E-value=0.0032  Score=51.97  Aligned_cols=23  Identities=17%  Similarity=0.437  Sum_probs=20.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCc
Q 029158           23 EIAFAGRSNVGKSSMLNALTRQW   45 (198)
Q Consensus        23 ~v~~vG~~~~GKSsli~~l~~~~   45 (198)
                      .++++|+.|+|||||++.|.+..
T Consensus       380 iv~iiG~NGsGKSTLlk~l~Gl~  402 (608)
T 3j16_B          380 ILVMMGENGTGKTTLIKLLAGAL  402 (608)
T ss_dssp             EEEEESCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Confidence            47999999999999999999863

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=96.11  E-value=0.0036  Score=48.35  Aligned_cols=24  Identities=29%  Similarity=0.495  Sum_probs=20.8

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHh
Q 029158           19 PDLPEIAFAGRSNVGKSSMLNALT   42 (198)
Q Consensus        19 ~~~~~v~~vG~~~~GKSsli~~l~   42 (198)
                      .+..+|+++|.+|||||||+..+.
T Consensus        31 ~~~~killlG~~~SGKST~~kq~~   54 (362)
T 1zcb_A           31 ARLVKILLLGAGESGKSTFLKQMR   54 (362)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHH
T ss_pred             cCccEEEEECCCCCcHHHHHHHHH
Confidence            346799999999999999998864

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=96.09  E-value=0.0033  Score=46.37  Aligned_cols=25  Identities=16%  Similarity=0.411  Sum_probs=21.6

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      ....+++.|++|+|||+|+.++...
T Consensus        63 ~~~~vLl~G~~GtGKT~la~~ia~~   87 (272)
T 1d2n_A           63 PLVSVLLEGPPHSGKTALAAKIAEE   87 (272)
T ss_dssp             SEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHH
Confidence            3457999999999999999999875

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=96.06  E-value=0.0014  Score=55.54  Aligned_cols=24  Identities=25%  Similarity=0.441  Sum_probs=21.1

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      ...++++|+||+|||+++..+...
T Consensus       201 ~~~vLL~G~pGtGKT~la~~la~~  224 (758)
T 3pxi_A          201 KNNPVLIGEPGVGKTAIAEGLAQQ  224 (758)
T ss_dssp             SCEEEEESCTTTTTHHHHHHHHHH
T ss_pred             CCCeEEECCCCCCHHHHHHHHHHH
Confidence            457999999999999999998764

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=96.06  E-value=0.0043  Score=44.75  Aligned_cols=25  Identities=16%  Similarity=0.295  Sum_probs=20.9

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      +..++.++|++||||||+...|...
T Consensus         7 ~~~~~~~~G~pGsGKsT~a~~L~~~   31 (230)
T 3gmt_A            7 HHMRLILLGAPGAGKGTQANFIKEK   31 (230)
T ss_dssp             --CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             cccceeeECCCCCCHHHHHHHHHHH
Confidence            4678999999999999999988754

>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12

Probab=96.04  E-value=0.00039  Score=50.20  Aligned_cols=22  Identities=23%  Similarity=0.419  Sum_probs=19.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 029158           23 EIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        23 ~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      .++++|++|||||||++.+++.
T Consensus        29 ~~~i~GpnGsGKSTll~~i~g~   50 (227)
T 1qhl_A           29 VTTLSGGNGAGKSTTMAAFVTA   50 (227)
T ss_dssp             HHHHHSCCSHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcc
Confidence            3578999999999999999875

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=96.02  E-value=0.0048  Score=46.57  Aligned_cols=24  Identities=25%  Similarity=0.425  Sum_probs=21.5

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      ...+++.|++|+|||+|+.++...
T Consensus       152 ~~~lll~G~~GtGKT~La~aia~~  175 (308)
T 2qgz_A          152 QKGLYLYGDMGIGKSYLLAAMAHE  175 (308)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHH
Confidence            467999999999999999998875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	198
d1svia_	195	c.37.1.8 (A:) Probable GTPase EngB {Bacillus subti	1e-26
d1puia_	188	c.37.1.8 (A:) Probable GTPase EngB {Escherichia co	1e-23
d2cxxa1	184	c.37.1.8 (A:2-185) GTP-binding protein engB {Pyroc	1e-16
d1udxa2	180	c.37.1.8 (A:157-336) Obg GTP-binding protein middl	1e-15
d1lnza2	185	c.37.1.8 (A:158-342) Obg GTP-binding protein middl	9e-15
d1tq4a_	400	c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (	2e-14
d1egaa1	179	c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {	2e-12
d1mkya2	186	c.37.1.8 (A:173-358) Probable GTPase Der, N-termin	3e-12
d1xzpa2	160	c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotog	3e-11
d1mkya1	171	c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal	2e-10
d2gj8a1	161	c.37.1.8 (A:216-376) Probable tRNA modification GT	3e-09
d1wf3a1	178	c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {	3e-09
d1nrjb_	209	c.37.1.8 (B:) Signal recognition particle receptor	3e-07
d1g7sa4	227	c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-	7e-07
d1zj6a1	177	c.37.1.8 (A:2-178) ADP-ribosylation factor {Human	1e-05
d1puja_	273	c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subti	2e-05
d2f9la1	175	c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [T	2e-05
d1r8sa_	160	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	3e-05
d1upta_	169	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	4e-05
d1h65a_	257	c.37.1.8 (A:) Chloroplast protein translocon GTPas	4e-05
d1fzqa_	176	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	6e-05
d2qtvb1	166	c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharom	9e-05
d1x3sa1	177	c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta	1e-04
d1zd9a1	164	c.37.1.8 (A:18-181) ADP-ribosylation factor {Human	2e-04
d2fh5b1	207	c.37.1.8 (B:63-269) Signal recognition particle re	7e-04
d2c78a3	204	c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N	8e-04
d1jwyb_	306	c.37.1.8 (B:) Dynamin G domain {Dictyostelium disc	0.001
d3raba_	169	c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI	0.001
d1f6ba_	186	c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus gr	0.001
d2akab1	299	c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus n	0.002
d1ky3a_	175	c.37.1.8 (A:) Rab-related protein ypt7p {Baker's y	0.002
d1g16a_	166	c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye	0.002
d2fu5c1	173	c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta	0.002
d1ksha_	165	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	0.003

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} Length = 195

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

 Score = 98.7 bits (244), Expect = 1e-26
 Identities = 61/191 (31%), Positives = 101/191 (52%), Gaps = 2/191 (1%)

Query: 2   NKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN 61
            K E   +A     +P   LPEIA AGRSNVGKSS +N+L  +  + RTS KPG TQT+N
Sbjct: 4   TKSEIVISAVKPEQYPEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLN 63

Query: 62  FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD 121
           F+ +  +L  VD+PGYGFA   +  ++AW  +++ Y++TR  LK V  ++D +      D
Sbjct: 64  FYIINDELHFVDVPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDD 123

Query: 122 HELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAG 181
            ++   ++       V+ TK D +      + A  + ++L  +      +++ SS++  G
Sbjct: 124 VQMYEFLKYYGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPE--DELILFSSETKKG 181

Query: 182 IRSLRTVLSKI 192
                  + K+
Sbjct: 182 KDEAWGAIKKM 192

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} Length = 188

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

 Score = 90.6 bits (223), Expect = 1e-23
 Identities = 70/185 (37%), Positives = 96/185 (51%), Gaps = 1/185 (0%)

Query: 6   FFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL 65
           F  +A      P+    E+AFAGRSN GKSS LN LT Q  + RTS  PG TQ IN F++
Sbjct: 1   FVMSAPDIRHLPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEV 60

Query: 66  GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELI 125
                LVDLPGYG+A   EE+K  W+  + EY+  R SL+ + +L+D +  +K  D ++I
Sbjct: 61  ADGKRLVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMI 120

Query: 126 SLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSL 185
                S     V+LTK D +       +   + E++ A N  V  V   SS    G+  L
Sbjct: 121 EWAVDSNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDV-QVETFSSLKKQGVDKL 179

Query: 186 RTVLS 190
           R  L 
Sbjct: 180 RQKLD 184

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 72.4 bits (176), Expect = 1e-16
 Identities = 37/183 (20%), Positives = 73/183 (39%), Gaps = 15/183 (8%)

Query: 24  IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAK 83
           I FAGRSNVGKS+++  LT +   VR   +PG+T+ I   +      +            
Sbjct: 3   IIFAGRSNVGKSTLIYRLTGKK--VRRGKRPGVTRKIIEIEWKNHKIIDMPGFGFMMGLP 60

Query: 84  EEVKDAWEELVKEYVSTRVSLKRVCLLI------------DTKWGVKPRDHELISLMERS 131
           +EV++  ++ +  ++        V +L+              K G  P D E    +   
Sbjct: 61  KEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLREL 120

Query: 132 QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSK 191
                V + K D +  +      +  +  +  +  + +  + +S+K G  I  L+  + +
Sbjct: 121 DIPTIVAVNKLDKIKNVQEVINFLAEKFEVPLSE-IDKVFIPISAKFGDNIERLKNRIFE 179

Query: 192 IAR 194
           + R
Sbjct: 180 VIR 182

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} Length = 180

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

 Score = 69.7 bits (169), Expect = 1e-15
 Identities = 35/180 (19%), Positives = 64/180 (35%), Gaps = 18/180 (10%)

Query: 21  LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN----FFKLGTKLCLVDLPG 76
           + ++   G  N GKSS+L A+TR     + +  P  T + N          +  L D+PG
Sbjct: 1   IADVGLVGYPNAGKSSLLAAMTRAH--PKIAPYPFTTLSPNLGVVEVSEEERFTLADIPG 58

Query: 77  YGFAYAKEE--VKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK 134
                ++ +    +    + +  V   V       L   +   K       +L+ R    
Sbjct: 59  IIEGASEGKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLV 118

Query: 135 YQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR 194
                 K D +           ++    A       V+ VS+ +GAG+ +L+  L  + R
Sbjct: 119 AL---NKVDLLEE-------EAVKALADALAREGLAVLPVSALTGAGLPALKEALHALVR 168

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} Length = 185

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

 Score = 66.9 bits (162), Expect = 9e-15
 Identities = 30/180 (16%), Positives = 62/180 (34%), Gaps = 20/180 (11%)

Query: 21  LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN----FFKLGTKLCLVDLPG 76
           L ++   G  +VGKS++L+ ++      + +D    T   N        G    + DLP 
Sbjct: 1   LADVGLVGFPSVGKSTLLSVVSSAK--PKIADYHFTTLVPNLGMVETDDGRSFVMADLP- 57

Query: 77  YGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLID-----TKWGVKPRDHELISLMERS 131
            G      +      + ++    TRV +  + +            +          +  +
Sbjct: 58  -GLIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLT 116

Query: 132 QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSK 191
           +    +V  K D          A +  E+ K   +   PV  +S+ +  G+R L   ++ 
Sbjct: 117 ERPQIIVANKMDMP-------EAAENLEAFKEKLTDDYPVFPISAVTREGLRELLFEVAN 169

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} Length = 400

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 68.6 bits (167), Expect = 2e-14
 Identities = 29/189 (15%), Positives = 56/189 (29%), Gaps = 30/189 (15%)

Query: 24  IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI-----NFFKLGTKLCLVDLPGYG 78
           +A  G +  GKSS +N L         + K G+ +               +   DLPG G
Sbjct: 59  VAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIG 118

Query: 79  FAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVV 138
                 +           Y+      +    +I +    K  D ++   +   + ++  V
Sbjct: 119 STNFPPD----------TYLEKMKFYEYDFFIIISATRFKKNDIDIAKAISMMKKEFYFV 168

Query: 139 LTKTDTVFPIDVARRA-------------MQIEESLKANNSLVQPVMMVSSK--SGAGIR 183
            TK D+    +                  +    + + N     P+ ++S+K        
Sbjct: 169 RTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFP 228

Query: 184 SLRTVLSKI 192
            L   L   
Sbjct: 229 VLMDKLISD 237

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 60.5 bits (145), Expect = 2e-12
 Identities = 30/168 (17%), Positives = 59/168 (35%), Gaps = 7/168 (4%)

Query: 24  IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAK 83
           IA  GR NVGKS++LN L  Q  +  TS K   T+               +         
Sbjct: 8   IAIVGRPNVGKSTLLNKLLGQK-ISITSRKAQTTRHRIVGIHTEGAYQ-AIYVDTPGLHM 65

Query: 84  EEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTD 143
           EE +     + K   S+   ++ V  +++        +  L  L E        V    +
Sbjct: 66  EEKRAINRLMNKAASSSIGDVELVIFVVEGTRWTPDDEMVLNKLREGKAPVILAVNKVDN 125

Query: 144 TVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSK 191
                D+      +   +         ++ +S+++G  + ++  ++ K
Sbjct: 126 VQEKADLLPHLQFLASQMN-----FLDIVPISAETGLNVDTIAAIVRK 168

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

 Score = 60.1 bits (144), Expect = 3e-12
 Identities = 40/180 (22%), Positives = 65/180 (36%), Gaps = 8/180 (4%)

Query: 19  PDLPE---IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLV 72
           P++ +   +A  GR NVGKS++ NA+  +      S  PG T+     ++   G K   V
Sbjct: 3   PEITDAIKVAIVGRPNVGKSTLFNAILNKE-RALVSPIPGTTRDPVDDEVFIDGRKYVFV 61

Query: 73  DLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQ 132
           D  G       E          +   S       V +++D   G+  +D  +  LMER  
Sbjct: 62  DTAGLRRKSRVEPRTVEKYSNYRVVDSIE-KADVVVIVLDATQGITRQDQRMAGLMERRG 120

Query: 133 TKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKI 192
               VV  K D V   +            K       P++  S+  G  I  +   ++  
Sbjct: 121 RASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMIDAMNLA 180

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

 Score = 56.9 bits (136), Expect = 3e-11
 Identities = 37/171 (21%), Positives = 71/171 (41%), Gaps = 18/171 (10%)

Query: 24  IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFA 80
           +   G+ NVGKS++LN L  +      +D PG T+ +   ++   G    +VD  G    
Sbjct: 3   MVIVGKPNVGKSTLLNRLLNE-DRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGV--- 58

Query: 81  YAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLT 140
             + E  D  E L  E   T   +++  +++       P D E   ++ER + K  +V+ 
Sbjct: 59  --RSETNDLVERLGIE--RTLQEIEKADIVLFVLDASSPLDEEDRKILERIKNKRYLVVI 114

Query: 141 KTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSK 191
               V          +I+  L  +    + ++ +S+  G G+  L   + +
Sbjct: 115 NKVDVVE---KINEEEIKNKLGTD----RHMVKISALKGEGLEKLEESIYR 158

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

 Score = 55.1 bits (131), Expect = 2e-10
 Identities = 26/168 (15%), Positives = 57/168 (33%), Gaps = 9/168 (5%)

Query: 24  IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAK 83
           +   GR NVGKS++ N L ++       D+ G+T+      +        L      +  
Sbjct: 3   VLIVGRPNVGKSTLFNKLVKKK-KAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDN 61

Query: 84  EEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTD 143
            +   + +         R +   V  ++D K G+   D  L   + +S     +V  K +
Sbjct: 62  PQDIISQKMKEVTLNMIREA-DLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAE 120

Query: 144 TVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSK 191
            +   +   +                  + VS++    + ++   + K
Sbjct: 121 NLREFEREVKPELYSLGFG-------EPIPVSAEHNINLDTMLETIIK 161

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} Length = 161

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

 Score = 51.7 bits (122), Expect = 3e-09
 Identities = 27/168 (16%), Positives = 56/168 (33%), Gaps = 12/168 (7%)

Query: 24  IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAK 83
           +  AGR N GKSS+LNAL  +        +  +   I           + + G       
Sbjct: 4   VVIAGRPNAGKSSLLNALAGR--------EAAIVTDIAGTTRDVLREHIHIDGMPLHIID 55

Query: 84  EEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTD 143
                   + V+     R   +           +   D      ++ ++   + +     
Sbjct: 56  TAGLREASDEVERIGIERAWQEIEQ----ADRVLFMVDGTTTDAVDPAEIWPEFIARLPA 111

Query: 144 TVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSK 191
            +    V  +A    E+L  +      ++ +S+++G G+  LR  L +
Sbjct: 112 KLPITVVRNKADITGETLGMSEVNGHALIRLSARTGEGVDVLRNHLKQ 159

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} Length = 178

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

 Score = 51.7 bits (122), Expect = 3e-09
 Identities = 25/168 (14%), Positives = 48/168 (28%), Gaps = 8/168 (4%)

Query: 24  IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAK 83
           +A  G+ NVGKS++LN L     V   S +P  T+      L      +        +  
Sbjct: 8   VAIVGKPNVGKSTLLNNLLGVK-VAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKP 66

Query: 84  EEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTD 143
            +    + +         V+     + +      +             +    +V  K D
Sbjct: 67  MDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLD 126

Query: 144 TVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSK 191
                + A +A                  M+S+     +  L+  L  
Sbjct: 127 AAKYPEEAMKAYH-------ELLPEAEPRMLSALDERQVAELKADLLA 167

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 209

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.9 bits (110), Expect = 3e-07
 Identities = 24/182 (13%), Positives = 45/182 (24%), Gaps = 16/182 (8%)

Query: 22  PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAY 81
           P I  AG  N GK+S+L  LT        S +P +               V L  +    
Sbjct: 4   PSIIIAGPQNSGKTSLLTLLTTD------SVRPTVVSQEPLSAADYDGSGVTLVDFPGHV 57

Query: 82  AKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKW-----GVKPRDHELISLMERSQTKYQ 136
                    + L       +  +  V   +D K              +      +     
Sbjct: 58  KLR--YKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDIL 115

Query: 137 VVLTKTDTVFPIDVARRAMQIE---ESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA 193
           +   K++       ++    +E   + +          +           +   VL    
Sbjct: 116 IACNKSELFTARPPSKIKDALESEIQKVIERRKKSLNEVERKINEEDYAENTLDVLQSTD 175

Query: 194 RF 195
            F
Sbjct: 176 GF 177

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 227

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 45.8 bits (107), Expect = 7e-07
 Identities = 33/215 (15%), Positives = 69/215 (32%), Gaps = 45/215 (20%)

Query: 22  PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAY 81
           P ++  G  + GK+++L+ +       R  +  G+TQ I   ++   +       +   +
Sbjct: 6   PIVSVLGHVDHGKTTLLDHIRGSAVASR--EAGGITQHIGATEIPMDVIEGICGDFLKKF 63

Query: 82  AKEEVK--------DAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQT 133
           +  E             E                 L++D   G KP+  E ++++   +T
Sbjct: 64  SIRETLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYRT 123

Query: 134 KYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQ------------------------ 169
            + V   K D +             E+    +  VQ                        
Sbjct: 124 PFVVAANKIDRIHG-WRVHEGRPFMETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERF 182

Query: 170 ----------PVMMVSSKSGAGIRSLRTVLSKIAR 194
                      ++ +S+ +G GI  L T+L  +A+
Sbjct: 183 DRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQ 217

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

 Score = 41.5 bits (96), Expect = 1e-05
 Identities = 16/175 (9%), Positives = 51/175 (29%), Gaps = 15/175 (8%)

Query: 24  IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAK 83
           +   G  N GK+++L   +    V  +       + I        +  +       +   
Sbjct: 18  VIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWN 77

Query: 84  EEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTD 143
               +             V +       +     +   +++++  +  +    +   K D
Sbjct: 78  TYYTNTE----------FVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQD 127

Query: 144 TVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIARFAKV 198
               + VA  +  ++ +   ++     +    + +G G+      L  +    K+
Sbjct: 128 VKECMTVAEISQFLKLTSIKDHQW--HIQACCALTGEGL---CQGLEWMMSRLKI 177

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} Length = 273

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

 Score = 42.1 bits (98), Expect = 2e-05
 Identities = 21/62 (33%), Positives = 38/62 (61%), Gaps = 1/62 (1%)

Query: 24  IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAK 83
               G  NVGKS+++N L ++  + +T D+PG+T +  + K+G +L L+D PG  +   +
Sbjct: 115 ALIIGIPNVGKSTLINRLAKKN-IAKTGDRPGITTSQQWVKVGKELELLDTPGILWPKFE 173

Query: 84  EE 85
           +E
Sbjct: 174 DE 175

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (95), Expect = 2e-05
 Identities = 26/175 (14%), Positives = 55/175 (31%), Gaps = 12/175 (6%)

Query: 24  IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAK 83
           +   G S VGKS++L+  TR    + +    G+       ++  K     +        +
Sbjct: 7   VVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTA---GQ 63

Query: 84  EEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTD 143
           E  +         Y     +L    +     +    R  + +     S     +V  K+D
Sbjct: 64  ERYRRITSA---YYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSD 120

Query: 144 TVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSL-RTVLSKIARFAK 197
                    RA+  +E+           +  S+     +    + +L++I R   
Sbjct: 121 LRHL-----RAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVS 170

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

 Score = 40.4 bits (93), Expect = 3e-05
 Identities = 25/170 (14%), Positives = 51/170 (30%), Gaps = 13/170 (7%)

Query: 24  IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAK 83
           I   G    GK+++L  L    G + T+                   + D+ G       
Sbjct: 3   ILMVGLDAAGKTTILYKLKL--GEIVTTIPTIGFNVETVEYKNISFTVWDVGGQ------ 54

Query: 84  EEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTD 143
               D    L + Y      L  V    D +   + R+  +  L E       +++    
Sbjct: 55  ----DKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANK 110

Query: 144 TVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIR-SLRTVLSKI 192
              P  +    +  +  L +       +    + SG G+   L  + +++
Sbjct: 111 QDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 160

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

 Score = 40.1 bits (92), Expect = 4e-05
 Identities = 22/168 (13%), Positives = 42/168 (25%), Gaps = 12/168 (7%)

Query: 24  IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAK 83
           I   G    GK+++L  L     VV T    G       +K        +L    +    
Sbjct: 8   ILILGLDGAGKTTILYRLQVGE-VVTTIPTIGFNVETVTYK--------NLKFQVWDLGG 58

Query: 84  EEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTD 143
                 +           + +   C               ++   E  +    V   K D
Sbjct: 59  LTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSEL-VAMLEEEELRKAILVVFANKQD 117

Query: 144 TVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSK 191
               +  +  A  +      +      +   S+  G G+      L +
Sbjct: 118 MEQAMTSSEMANSLGLPALKDRKW--QIFKTSATKGTGLDEAMEWLVE 163

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 257

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

 Score = 40.6 bits (94), Expect = 4e-05
 Identities = 22/151 (14%), Positives = 44/151 (29%), Gaps = 6/151 (3%)

Query: 24  IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAK 83
           I   G+  VGKSS +N++  +  VV  S                    +++         
Sbjct: 35  ILVMGKGGVGKSSTVNSIIGE-RVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEG 93

Query: 84  EEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQ-----VV 138
             + D    ++K ++  +     + +     + V   D  +   +  S  K       V 
Sbjct: 94  GYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVA 153

Query: 139 LTKTDTVFPIDVARRAMQIEESLKANNSLVQ 169
           LT      P  +       + S      +  
Sbjct: 154 LTHAQFSPPDGLPYDEFFSKRSEALLQVVRS 184

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

 Score = 39.6 bits (91), Expect = 6e-05
 Identities = 24/170 (14%), Positives = 53/170 (31%), Gaps = 13/170 (7%)

Query: 24  IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAK 83
           I   G  N GK+++L  L  +     T      TQ  N   + ++   +++   G     
Sbjct: 19  ILLLGLDNAGKTTLLKQLASEDISHITP-----TQGFNIKSVQSQGFKLNVWDIGGQRKI 73

Query: 84  EEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTD 143
                ++ E     +    S  R       +   +  + E     + S     +   K D
Sbjct: 74  RPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEE-----KLSCVPVLIFANKQD 128

Query: 144 TVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIR-SLRTVLSKI 192
            +     +  A  +      +      +   S+ +G G++  +  V   +
Sbjct: 129 LLTAAPASEIAEGLNLHTIRDRVW--QIQSCSALTGEGVQDGMNWVCKNV 176

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.9 bits (89), Expect = 9e-05
 Identities = 18/172 (10%), Positives = 40/172 (23%), Gaps = 8/172 (4%)

Query: 24  IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAK 83
           + F G  N GK+++L+ L               T      +L            G     
Sbjct: 3   LLFLGLDNAGKTTLLHMLKND-----RLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQA 57

Query: 84  EEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTD 143
             +   +   V   V    +                 +   +  +       ++      
Sbjct: 58  RRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAV 117

Query: 144 TVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIARF 195
           +   +  A   +    S +        V M S     G          ++++
Sbjct: 118 SEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGY---LEAFQWLSQY 166

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.7 bits (89), Expect = 1e-04
 Identities = 30/173 (17%), Positives = 53/173 (30%), Gaps = 18/173 (10%)

Query: 24  IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFA 80
           I   G S VGKSS+L   T        +   G+   +    +     KL + D  G    
Sbjct: 10  ILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAG---- 65

Query: 81  YAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLT 140
                 ++ +  L   Y      +  V  +      VK  +         ++     +L 
Sbjct: 66  ------QERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLV 119

Query: 141 KTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSL-RTVLSKI 192
                       R +   E LK         +  S+K+  G++     ++ KI
Sbjct: 120 GNKIDKE----NREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKI 168

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

 Score = 38.1 bits (87), Expect = 2e-04
 Identities = 23/174 (13%), Positives = 50/174 (28%), Gaps = 14/174 (8%)

Query: 24  IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAK 83
           +   G    GK++ +N +       + ++    T   N  K+      + L   G     
Sbjct: 5   LTLVGLQYSGKTTFVNVIASG----QFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRF 60

Query: 84  EEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTD 143
             + + +   V   V    +  +  +           D       +       V+  K D
Sbjct: 61  RSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKP-----QLQGIPVLVLGNKRD 115

Query: 144 TVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIARFAK 197
              P  +  + +  + +L A          +S K    I      L  + + +K
Sbjct: 116 --LPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDIT---LQWLIQHSK 164

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 207

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.9 bits (84), Expect = 7e-04
 Identities = 18/143 (12%), Positives = 39/143 (27%), Gaps = 13/143 (9%)

Query: 24  IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAK 83
           + F G  + GK+ +   L           +  +T +   +K+               +  
Sbjct: 3   VLFVGLCDSGKTLLFVRLLTG---QYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHES 59

Query: 84  EEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQ-----VV 138
              +         + S+  ++  V      +  VK     L  ++  S          + 
Sbjct: 60  LRFQLLD-----RFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIA 114

Query: 139 LTKTDTVFPIDVARRAMQIEESL 161
             K D            Q+E+ L
Sbjct: 115 CNKQDIAMAKSAKLIQQQLEKEL 137

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} Length = 204

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

 Score = 36.5 bits (84), Expect = 8e-04
 Identities = 26/162 (16%), Positives = 51/162 (31%), Gaps = 33/162 (20%)

Query: 24  IAFAGRSNVGKSSMLNALTRQWGVVRTSDK---------------PGLTQTINFFKL--- 65
           +   G  + GK+++  ALT        + +                G+T      +    
Sbjct: 6   VGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETA 65

Query: 66  GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELI 125
                 VD PG+              + +K  ++    +    L++    G  P+  E I
Sbjct: 66  KRHYSHVDCPGH-------------ADYIKNMITGAAQMDGAILVVSAADGPMPQTREHI 112

Query: 126 SLMERSQTKYQV-VLTKTDTVFPIDVARRA-MQIEESLKANN 165
            L  +    Y V  + K D V   ++     M++ + L    
Sbjct: 113 LLARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYE 154

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} Length = 306

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

 Score = 36.7 bits (84), Expect = 0.001
 Identities = 10/25 (40%), Positives = 15/25 (60%)

Query: 20 DLPEIAFAGRSNVGKSSMLNALTRQ 44
          DLP+I   G  + GKSS+L  +  +
Sbjct: 23 DLPQIVVVGSQSSGKSSVLENIVGR 47

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.0 bits (82), Expect = 0.001
 Identities = 25/173 (14%), Positives = 46/173 (26%), Gaps = 18/173 (10%)

Query: 24  IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGL---TQTINFFKLGTKLCLVDLPGYGFA 80
           I   G S+VGK+S L                G+    +TI       KL + D  G    
Sbjct: 8   ILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAG---- 63

Query: 81  YAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLT 140
             +E  +         Y      +  +   I  +            +   S    QV+L 
Sbjct: 64  --QERYRTITTAY---YRGAMGFI--LMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLV 116

Query: 141 KTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSL-RTVLSKI 192
                   +    + +  +               S+K    ++     ++  I
Sbjct: 117 GNKCDMEDERVVSSERGRQLADHLGF---EFFEASAKDNINVKQTFERLVDVI 166

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 35.8 bits (81), Expect = 0.001
 Identities = 19/168 (11%), Positives = 48/168 (28%)

Query: 24  IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAK 83
           + F G  N GK+++L+ L               ++ +    +      +          K
Sbjct: 16  LVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHIQARRVWK 75

Query: 84  EEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTD 143
             +      +     +    L      +D+    +   +  I ++     + + +  +  
Sbjct: 76  NYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERL 135

Query: 144 TVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSK 191
                   +   +   SLK  N+    V M S     G       +++
Sbjct: 136 REMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQ 183

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 299

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.0 bits (82), Expect = 0.002
 Identities = 11/24 (45%), Positives = 14/24 (58%)

Query: 20 DLPEIAFAGRSNVGKSSMLNALTR 43
          DLP+IA  G  + GKSS+L     
Sbjct: 25 DLPQIAVVGGQSAGKSSVLENFVG 48

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 35.4 bits (80), Expect = 0.002
 Identities = 21/175 (12%), Positives = 51/175 (29%), Gaps = 7/175 (4%)

Query: 20  DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGF 79
           ++ ++   G S VGK+S+++             K  +       ++      V       
Sbjct: 1   NILKVIILGDSGVGKTSLMHRYVN--DKYSQQYKATIGADFLTKEVTVDGDKVATMQVWD 58

Query: 80  AYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVL 139
              +E  +       +      +                  +  + + +   +T   V+L
Sbjct: 59  TAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVIL 118

Query: 140 TKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR 194
                             +E  K+   +  P+ + S+K+   +    T   +IAR
Sbjct: 119 GNKIDAEESKKIVSEKSAQELAKSLGDI--PLFLTSAKNAINV---DTAFEEIAR 168

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 35.1 bits (80), Expect = 0.002
 Identities = 23/174 (13%), Positives = 52/174 (29%), Gaps = 18/174 (10%)

Query: 24  IAFAGRSNVGKSSMLNALTRQ---WGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFA 80
           I   G S VGKS +L            + T       +T++      KL + D  G    
Sbjct: 5   ILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAG---- 60

Query: 81  YAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLT 140
                 ++ +  +   Y         + +++      +     +    +           
Sbjct: 61  ------QERFRTITTAYYR-----GAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQ 109

Query: 141 KTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR 194
                   D+  R +  ++       L  P +  S+K+   +  +   L+K+ +
Sbjct: 110 LLLVGNKSDMETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQ 163

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.1 bits (80), Expect = 0.002
 Identities = 24/179 (13%), Positives = 54/179 (30%), Gaps = 22/179 (12%)

Query: 24  IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPG---LTQTINFFKLGTKLCLVDLPGYGFA 80
           +   G S VGK+ +L   +            G     +TI       KL + D  G    
Sbjct: 9   LLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAG---- 64

Query: 81  YAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLT 140
             +E  +       +        +  +   I  +       + + ++ E +    + ++ 
Sbjct: 65  --QERFRTITTAYYR---GAMGIM--LVYDITNEKSFDNIRNWIRNIEEHASADVEKMIL 117

Query: 141 KTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSL-----RTVLSKIAR 194
                      +R +  E   K         M  S+K+   + +      R + +K+ +
Sbjct: 118 GNKCDVND---KRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDK 173

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

 Score = 34.6 bits (78), Expect = 0.003
 Identities = 25/172 (14%), Positives = 55/172 (31%), Gaps = 13/172 (7%)

Query: 24  IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAK 83
           +   G  N GK+++L     +       D    T   N   L  +   +++   G     
Sbjct: 5   LLMLGLDNAGKTTILKKFNGE-----DVDTISPTLGFNIKTLEHRGFKLNIWDVGG---- 55

Query: 84  EEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTD 143
              + +     + Y  +   L  V    D +     +      L+E       +++    
Sbjct: 56  ---QKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANK 112

Query: 144 TVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIR-SLRTVLSKIAR 194
              P  ++  A+Q    L +  S    +   S+ +G  +   +  +L  I+ 
Sbjct: 113 QDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISS 164

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	198
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	100.0
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	99.96
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	99.96
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	99.96
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	99.95
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	99.95
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	99.95
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	99.94
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	99.94
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	99.94
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	99.93
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	99.93
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	99.93
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	99.92
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.92
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.92
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.92
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.91
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.91
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	99.91
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	99.9
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.9
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	99.9
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	99.9
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	99.9
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	99.9
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	99.9
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	99.89
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.89
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	99.89
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	99.89
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	99.89
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	99.89
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	99.89
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	99.89
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	99.89
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	99.89
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	99.88
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	99.88
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	99.88
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	99.88
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	99.88
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	99.88
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.88
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	99.88
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	99.88
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	99.87
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	99.87
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	99.87
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	99.87
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	99.87
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	99.87
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	99.87
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	99.87
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	99.87
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	99.87
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	99.87
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	99.87
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	99.86
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	99.86
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	99.86
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	99.86
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	99.86
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	99.85
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	99.85
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.85
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.84
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	99.84
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	99.84
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	99.83
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	99.83
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	99.83
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	99.82
d2fh5b1	207	Signal recognition particle receptor beta-subunit	99.82
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	99.81
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	99.8
d1nrjb_	209	Signal recognition particle receptor beta-subunit	99.8
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	99.75
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	99.73
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	99.7
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	99.69
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.68
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	99.65
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	99.64
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.64
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	99.59
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	99.58
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	99.55
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	99.54
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	99.52
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	99.38
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	99.3
d1j8yf2	211	GTPase domain of the signal sequence recognition p	99.02
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	99.01
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.99
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	98.97
d1vmaa2	213	GTPase domain of the signal recognition particle r	98.86
d2qy9a2	211	GTPase domain of the signal recognition particle r	98.81
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	98.8
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.68
d1okkd2	207	GTPase domain of the signal recognition particle r	98.59
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	98.55
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	98.46
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	98.43
d1ls1a2	207	GTPase domain of the signal sequence recognition p	98.42
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	98.22
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	98.07
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	98.03
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	97.9
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	97.88
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	97.86
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	97.75
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	97.74
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	97.73
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	97.69
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	97.69
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	97.67
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.67
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	97.63
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	97.62
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	97.59
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	97.58
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.58
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	97.57
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	97.57
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	97.57
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	97.54
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	97.53
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	97.51
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	97.51
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	97.5
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	97.48
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	97.48
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	97.47
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	97.46
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	97.45
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	97.44
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	97.44
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	97.44
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	97.44
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	97.43
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	97.43
d2awna2	232	Maltose transport protein MalK, N-terminal domain	97.41
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	97.4
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	97.39
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	97.39
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	97.38
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	97.37
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	97.37
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	97.35
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	97.35
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	97.34
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	97.34
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	97.33
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	97.33
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	97.32
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	97.32
d1g2912	240	Maltose transport protein MalK, N-terminal domain	97.31
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	97.31
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	97.29
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	97.26
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	97.25
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	97.22
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	97.22
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	97.22
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	97.21
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	97.21
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	97.19
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	97.15
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	97.14
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	97.13
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	97.12
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	97.1
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	97.07
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	97.06
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	97.04
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	97.01
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	96.98
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	96.98
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	96.97
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	96.93
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	96.83
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	96.82
d1hyqa_	232	Cell division regulator MinD {Archaeon Archaeoglob	96.79
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	96.78
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	96.67
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	96.67
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	96.65
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	96.64
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	96.6
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.55
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	96.52
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	96.5
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	96.48
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	96.42
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	96.4
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.36
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	96.34
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	96.32
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	96.31
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	96.24
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	96.18
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	96.08
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	96.03
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	95.98
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	95.95
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	95.94
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	95.93
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	95.87
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	95.82
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	95.82
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	95.8
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	95.78
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	95.78
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	95.77
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	95.76
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	95.73
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	95.65
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	95.55
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	95.53
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	95.52
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	95.52
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	95.36
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	95.36
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	95.31
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	95.19
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	95.17
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	94.97
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	94.93
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	94.88
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	94.75
d1tuea_	205	Replication protein E1 helicase domain {Human papi	94.74
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	94.73
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	94.69
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	94.64
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	94.32
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	94.19
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	94.14
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	94.12
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	94.11
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	94.02
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	93.98
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	93.86
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	93.79
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	93.64
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	93.52
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	93.44
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	93.44
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	93.4
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	93.23
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	93.19
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	92.82
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	92.44
d2b8ta1	139	Thymidine kinase, TK1, N-terminal domain {Ureaplas	92.24
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	92.23
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	91.65
d1xpua3	289	Transcription termination factor Rho, ATPase domai	91.42
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	90.72
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	90.29
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	89.88
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	89.71
d1xx6a1	141	Thymidine kinase, TK1, N-terminal domain {Clostrid	88.64
d1c9ka_	180	Adenosylcobinamide kinase/adenosylcobinamide phosp	88.4
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	87.78
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	87.66
g1qhh.1	623	DEXX box DNA helicase {Bacillus stearothermophilus	87.56
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	86.11
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	85.74
d1wp9a1	200	putative ATP-dependent RNA helicase PF2015 {Pyroco	85.55
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	85.06
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	85.02
d1xbta1	133	Thymidine kinase, TK1, N-terminal domain {Human (H	84.01
d1ii2a1	323	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	83.86
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	83.74
d2p6ra3	202	Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22	80.19

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=100.00  E-value=4.1e-32  Score=192.80  Aligned_cols=191  Identities=32%  Similarity=0.530  Sum_probs=151.4

Q ss_pred             CccceeeccCCcCCCCCCCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEeCCceEEEeCCCCcccc
Q 029158            2 NKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAY   81 (198)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~iiDtpG~~~~~   81 (198)
                      .+.+|+.+..+..+.|....|+|+++|.+|+|||||+|+|++.+..+.....+.+|.+.........+.++|++|.+...
T Consensus         4 ~~~~~~~~~~~~~~~p~~~~~~I~lvG~~n~GKSTLin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~d~~~~~~~~   83 (195)
T d1svia_           4 TKSEIVISAVKPEQYPEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIINDELHFVDVPGYGFAK   83 (195)
T ss_dssp             CCEEEEEEESSGGGSCCSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETTTEEEEECCCBCCCS
T ss_pred             EEEEEEEecCChhHCCCCCCCEEEEECCCCCCHHHHHHHhcCCCceEEeecccceeeecccccccccceEEEEEeecccc
Confidence            45678888888899999999999999999999999999999875556777777788777777778889999999987765


Q ss_pred             chhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHH
Q 029158           82 AKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESL  161 (198)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~  161 (198)
                      ......+....+...+......+|++++++|+++++...+.++++.+...++|+++|+||+|+....+..+..+.+++.+
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~vi~viD~~~~~~~~~~~~~~~l~~~~~piivv~NK~D~~~~~~~~~~~~~~~~~l  163 (195)
T d1svia_          84 VSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKADKIPKGKWDKHAKVVRQTL  163 (195)
T ss_dssp             SCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCGGGHHHHHHHHHHHH
T ss_pred             ccccccchhhhHHhhhhccccchhhhhhhhhccccccccccccccccccccCcceechhhccccCHHHHHHHHHHHHHHh
Confidence            55555556666677777777789999999999998888889999999999999999999999998887777777777665


Q ss_pred             HhccCCCCCcEEeccCCCCChHHHHHHHHHhhc
Q 029158          162 KANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR  194 (198)
Q Consensus       162 ~~~~~~~~~v~~~Sa~~~~gi~~l~~~i~~~~~  194 (198)
                      ..  ....+++++||++|+|+++++++|.+.+.
T Consensus       164 ~~--~~~~~~~~~SA~~~~gi~el~~~i~~~l~  194 (195)
T d1svia_         164 NI--DPEDELILFSSETKKGKDEAWGAIKKMIN  194 (195)
T ss_dssp             TC--CTTSEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred             cc--cCCCCEEEEeCCCCCCHHHHHHHHHHHhC
Confidence            42  34578999999999999999999988763

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.96  E-value=8.7e-29  Score=173.05  Aligned_cols=162  Identities=20%  Similarity=0.165  Sum_probs=119.5

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEE---EEeCCceEEEeCCCCccccchhHHHHHHHHHHHHH
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF---FKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY   97 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~---~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~   97 (198)
                      ...|+++|.+|+|||||+|+|++. .....++.+++|.....   ...+.++.++||||+.......     ...+...+
T Consensus         5 ~~~I~lvG~~~~GKSSLin~l~~~-~~~~~~~~~~tt~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~-----~~~~~~~~   78 (178)
T d1wf3a1           5 SGFVAIVGKPNVGKSTLLNNLLGV-KVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDAL-----GEFMDQEV   78 (178)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHTS-CCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHH-----HHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCC-CceeecccCCcccccccceeeeeeeeeeeccccccccccccc-----chhccccc
Confidence            347999999999999999999998 55666777777765442   2346789999999986543222     13333445


Q ss_pred             HhcccccceEEEEEeCCCCCCcCcHHHHHHHHhh--CCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEec
Q 029158           98 VSTRVSLKRVCLLIDTKWGVKPRDHELISLMERS--QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVS  175 (198)
Q Consensus        98 ~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~--~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~S  175 (198)
                      ......+|++++|+|++.+....+..+.+.++..  +.|+++|+||+|+....+  +..+.+++.     .....++++|
T Consensus        79 ~~~~~~ad~il~v~D~~~~~~~~~~~i~~~l~~~~~~~piilv~NK~Dl~~~~~--~~~~~~~~~-----~~~~~~~~iS  151 (178)
T d1wf3a1          79 YEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAAKYPE--EAMKAYHEL-----LPEAEPRMLS  151 (178)
T ss_dssp             HHHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEEEEEECGGGCSSHH--HHHHHHHHT-----STTSEEEECC
T ss_pred             ccccccccceeeeechhhhhcccccchhhheeccccchhhhhhhcccccccCHH--HHHHHHHhh-----cccCceEEEe
Confidence            5556679999999999988777777777777654  689999999999977542  222233222     1235689999


Q ss_pred             cCCCCChHHHHHHHHHhhcc
Q 029158          176 SKSGAGIRSLRTVLSKIARF  195 (198)
Q Consensus       176 a~~~~gi~~l~~~i~~~~~~  195 (198)
                      |++|+|+++|+++|.+.++.
T Consensus       152 A~~~~gi~~L~~~i~~~lpe  171 (178)
T d1wf3a1         152 ALDERQVAELKADLLALMPE  171 (178)
T ss_dssp             TTCHHHHHHHHHHHHTTCCB
T ss_pred             cCCCCCHHHHHHHHHHhCCC
Confidence            99999999999999998753

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.96  E-value=2.2e-28  Score=171.71  Aligned_cols=168  Identities=27%  Similarity=0.413  Sum_probs=119.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEeCCceEEEeCCCCccccchh-HHHHHHH-HHHHHHHhc
Q 029158           23 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKE-EVKDAWE-ELVKEYVST  100 (198)
Q Consensus        23 ~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~iiDtpG~~~~~~~~-~~~~~~~-~~~~~~~~~  100 (198)
                      .|+++|.+|+|||||+|+|++.+  ..+++++++|++..... ..++.++||||++...... ...+.+. .+...+...
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~~--~~~~~~~g~T~~~~~~~-~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGKK--VRRGKRPGVTRKIIEIE-WKNHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDN   78 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSCC--CSSSSSTTCTTSCEEEE-ETTEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC--ceeeCCCCEeecccccc-cccceecccCCceeccccccccccccchhhhhhhhhc
Confidence            68999999999999999999974  35778888998765433 3568999999986543222 1222222 233334455


Q ss_pred             ccccceEEEEEeCCC-----------CCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhc-cCCC
Q 029158          101 RVSLKRVCLLIDTKW-----------GVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKAN-NSLV  168 (198)
Q Consensus       101 ~~~~d~vi~v~d~~~-----------~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~  168 (198)
                      ...+|++++++|+..           +....+.++++.+...+.|+++|+||+|+....+  .....+.+.+... ....
T Consensus        79 ~~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~p~iiv~NK~D~~~~~~--~~~~~~~~~~~~~~~~~~  156 (184)
T d2cxxa1          79 AKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNVQ--EVINFLAEKFEVPLSEID  156 (184)
T ss_dssp             GGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCHH--HHHHHHHHHHTCCGGGHH
T ss_pred             ccccchheeeeeccccchhhhhhhhccccHHHHHHHHHHHHcCCCEEEEEeeeehhhhHH--HHHHHHHHHhcccccccC
Confidence            567899999999863           4566667788888888999999999999886543  2223333332211 1112


Q ss_pred             CCcEEeccCCCCChHHHHHHHHHhhcc
Q 029158          169 QPVMMVSSKSGAGIRSLRTVLSKIARF  195 (198)
Q Consensus       169 ~~v~~~Sa~~~~gi~~l~~~i~~~~~~  195 (198)
                      ..++++||++|+|+++|+++|.+.++.
T Consensus       157 ~~~~~vSA~~g~gi~~L~~~i~~~l~e  183 (184)
T d2cxxa1         157 KVFIPISAKFGDNIERLKNRIFEVIRE  183 (184)
T ss_dssp             HHEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHccC
Confidence            458899999999999999999988763

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.96  E-value=3.8e-28  Score=169.92  Aligned_cols=161  Identities=23%  Similarity=0.341  Sum_probs=117.8

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCccceeecCCC------CceeE---EEEEEeCCceEEEeCCCCccccchhHHHHHHHH
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKP------GLTQT---INFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEE   92 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~------~~t~~---~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~   92 (198)
                      .+|+++|.+++|||||+|+|++.. .....+..      +.+..   ..+...+..+.++|+||+             ..
T Consensus         6 inIaiiG~~naGKSTL~n~L~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~g~-------------~~   71 (179)
T d1wb1a4           6 INLGIFGHIDHGKTTLSKVLTEIA-STSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGH-------------AD   71 (179)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHTTC---------------------CCCEEEETTEEEEECCCSSH-------------HH
T ss_pred             EEEEEEeCCCCcHHHHHHHHHHhc-CceecccccceeeeeeeccccccccccCCccccccccccc-------------cc
Confidence            479999999999999999999762 22222211      11111   123334567899999996             44


Q ss_pred             HHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhcc-CCCCCc
Q 029158           93 LVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANN-SLVQPV  171 (198)
Q Consensus        93 ~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~v  171 (198)
                      +..........+|++++++|++.+....+.+++..+...++|+++|+||+|+...+......+.+++...... ....++
T Consensus        72 ~~~~~~~~l~~~d~~ilv~d~~~g~~~~~~~~~~~~~~~~~p~iiv~NKiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  151 (179)
T d1wb1a4          72 LIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSI  151 (179)
T ss_dssp             HHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHTTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCE
T ss_pred             cccchhhhhhhccccccccccccccchhhhhhhhhhhhcCCcceeccccccccCHHHHHHHHHHHHHHHHHhhcCCCCeE
Confidence            5555666667799999999999998888888888888889999999999999987765554444444444332 235789


Q ss_pred             EEeccCCCCChHHHHHHHHHhhccc
Q 029158          172 MMVSSKSGAGIRSLRTVLSKIARFA  196 (198)
Q Consensus       172 ~~~Sa~~~~gi~~l~~~i~~~~~~~  196 (198)
                      +++||++|+|+++|++.|.+.++..
T Consensus       152 v~iSA~~g~gi~eL~~~I~~~l~~~  176 (179)
T d1wb1a4         152 IPISAKTGFGVDELKNLIITTLNNA  176 (179)
T ss_dssp             EECCTTTCTTHHHHHHHHHHHHHHS
T ss_pred             EEEEccCCcCHHHHHHHHHhcCCcc
Confidence            9999999999999999999887654

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.95  E-value=1.1e-27  Score=167.58  Aligned_cols=160  Identities=23%  Similarity=0.237  Sum_probs=108.7

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE--EEE--eCCceEEEeCCCCccccchhHHHHHHHHHHHHH
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FFK--LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY   97 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~--~~~--~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~   97 (198)
                      +.|+++|.+|+|||||+|+|++.. . ...+..+.|....  ...  .+..+.++||||+.......      ..+...+
T Consensus         2 ~~VaivG~~nvGKSTLin~L~~~~-~-~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~------~~~~~~~   73 (180)
T d1udxa2           2 ADVGLVGYPNAGKSSLLAAMTRAH-P-KIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEG------KGLGLEF   73 (180)
T ss_dssp             CSEEEECCGGGCHHHHHHHHCSSC-C-EECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGS------CCSCHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC-C-ceeccCCCceeeeeceeeecCCCeEEEcCCCeeecCchHH------HHHHHHH
Confidence            469999999999999999999873 3 3444444443322  222  35679999999986532211      1223345


Q ss_pred             HhcccccceEEEEEeCCCCCCcCcHHHHHHHH-----hhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcE
Q 029158           98 VSTRVSLKRVCLLIDTKWGVKPRDHELISLME-----RSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVM  172 (198)
Q Consensus        98 ~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~-----~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~  172 (198)
                      +.....++++++++|+..........+...+.     ..++|+++|+||+|+...++.+...+.+.       ..+.+++
T Consensus        74 l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~-------~~~~~~~  146 (180)
T d1udxa2          74 LRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEEEAVKALADALA-------REGLAVL  146 (180)
T ss_dssp             HHHHTSSSEEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCHHHHHHHHHHHH-------TTTSCEE
T ss_pred             HHHHHhhhhhhhhcccccccccchhhhhhhhhccccccchhhhhhhhhhhhhhhHHHHHHHHHHHH-------hcCCeEE
Confidence            55556689999999987533222222222222     23589999999999998765544333332       2367999


Q ss_pred             EeccCCCCChHHHHHHHHHhhccc
Q 029158          173 MVSSKSGAGIRSLRTVLSKIARFA  196 (198)
Q Consensus       173 ~~Sa~~~~gi~~l~~~i~~~~~~~  196 (198)
                      ++||++|+|+++|++.|.+.++..
T Consensus       147 ~iSA~tg~gid~L~~~i~~~l~~~  170 (180)
T d1udxa2         147 PVSALTGAGLPALKEALHALVRST  170 (180)
T ss_dssp             ECCTTTCTTHHHHHHHHHHHHHTS
T ss_pred             EEEcCCCCCHHHHHHHHHHHHhhc
Confidence            999999999999999998887643

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.95  E-value=3.1e-27  Score=164.05  Aligned_cols=161  Identities=19%  Similarity=0.225  Sum_probs=108.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE---EEEeCCceEEEeCCCCccccchhHHHHHHHHHHHHHHh
Q 029158           23 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS   99 (198)
Q Consensus        23 ~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~---~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~   99 (198)
                      .|+++|++|+|||||+++|++. .....+..+++|....   +......+.++|+||+.........    ......+..
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~-~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~----~~~~~~~~~   76 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKK-KKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIIS----QKMKEVTLN   76 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC---------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCC----HHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCC-CcceecccCceeeccccccccccccccccccccceeeeeccccc----ccccccccc
Confidence            6899999999999999999987 4455667777776533   3334667999999997554322111    112222333


Q ss_pred             cccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEeccCCC
Q 029158          100 TRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSG  179 (198)
Q Consensus       100 ~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~~  179 (198)
                      ....+|++++++|++++....+..+++.++..++|+++|+||+|+....+     ..+.+.+...  ...+++++||++|
T Consensus        77 ~~~~ad~i~~~~~~~~~~~~~~~~~~~~l~~~~~pviiv~NK~Dl~~~~~-----~~~~~~~~~~--~~~~~i~iSAk~g  149 (171)
T d1mkya1          77 MIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENLREFE-----REVKPELYSL--GFGEPIPVSAEHN  149 (171)
T ss_dssp             HHTTCSEEEEEEETTTCCCHHHHHHHHHHHHHTCCEEEEEESCCSHHHHH-----HHTHHHHGGG--SSCSCEECBTTTT
T ss_pred             ccccCcEEEEeecccccccccccccccccccccccccccchhhhhhhhhh-----hHHHHHHHhc--CCCCeEEEecCCC
Confidence            33458999999999998888888888888888999999999999974322     2222222222  2457899999999


Q ss_pred             CChHHHHHHHHHhhcc
Q 029158          180 AGIRSLRTVLSKIARF  195 (198)
Q Consensus       180 ~gi~~l~~~i~~~~~~  195 (198)
                      .|+++|+++|.++++.
T Consensus       150 ~gid~L~~~i~~~l~e  165 (171)
T d1mkya1         150 INLDTMLETIIKKLEE  165 (171)
T ss_dssp             BSHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHhCCC
Confidence            9999999999988764

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.95  E-value=4e-27  Score=165.51  Aligned_cols=172  Identities=24%  Similarity=0.281  Sum_probs=117.6

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE---EEEeCCceEEEeCCCCccccchhHHHHHHHHHHH
Q 029158           19 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVK   95 (198)
Q Consensus        19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~---~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~   95 (198)
                      ....+|+++|.+|+|||||+|+|++. ......+.++++....   +...+..+.++||||+........ .........
T Consensus         6 ~~~~kV~iiG~~~~GKSTLin~l~~~-~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~-~~~~~~~~~   83 (186)
T d1mkya2           6 TDAIKVAIVGRPNVGKSTLFNAILNK-ERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEP-RTVEKYSNY   83 (186)
T ss_dssp             CSCEEEEEECSTTSSHHHHHHHHHTS-TTEEECCCC------CCEEEEETTEEEEESSCSCC------------CCSCCH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHCC-CcceeecccccccccceeeeccCCceeeeeccCCccccccccc-cccccchhH
Confidence            34689999999999999999999997 5666777777776543   334467899999999854211110 000000111


Q ss_pred             HHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHH--HHHHHHHHHHHHHhccCCCCCcEE
Q 029158           96 EYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPID--VARRAMQIEESLKANNSLVQPVMM  173 (198)
Q Consensus        96 ~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~v~~  173 (198)
                      ........+|++++++|++.+......+++..+...+.|+|+|+||+|+....+  ..+..+.+.+.+..  ....++++
T Consensus        84 ~~~~~~~~~dvii~v~d~~~~~~~~~~~~~~~~~~~~~~~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~  161 (186)
T d1mkya2          84 RVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYF--IDYSPLIF  161 (186)
T ss_dssp             HHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGG--GTTSCEEE
T ss_pred             HHHHHHhcCCEEEEeecccccchhhHHHHHHHHHHcCCceeeeccchhhhcchhhhhhhHHHHHHHHhcc--cCCCeEEE
Confidence            222233448999999999998888888888888888999999999999976543  23334444443322  23578999


Q ss_pred             eccCCCCChHHHHHHHHHhhc
Q 029158          174 VSSKSGAGIRSLRTVLSKIAR  194 (198)
Q Consensus       174 ~Sa~~~~gi~~l~~~i~~~~~  194 (198)
                      +||++|.|+++|+++|.+.+.
T Consensus       162 vSa~~g~gv~~L~~~i~~~~~  182 (186)
T d1mkya2         162 TSADKGWNIDRMIDAMNLAYA  182 (186)
T ss_dssp             CBTTTTBSHHHHHHHHHHHHH
T ss_pred             EeCCCCCCHHHHHHHHHHHHH
Confidence            999999999999999988765

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=99.94  E-value=9.4e-26  Score=158.26  Aligned_cols=186  Identities=34%  Similarity=0.437  Sum_probs=125.2

Q ss_pred             eeeccCCcCCCCCCCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCce-eEEEEEEeCCceEEEeCCCCccccchh
Q 029158            6 FFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT-QTINFFKLGTKLCLVDLPGYGFAYAKE   84 (198)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t-~~~~~~~~~~~~~iiDtpG~~~~~~~~   84 (198)
                      |+.++...+++|.+..++|+++|.+|+|||||+|+|++.+ ........+++ ..............+++.+........
T Consensus         1 ~~~~~~~~~~~p~~~~~~I~lvG~~NvGKSSL~n~L~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (188)
T d1puia_           1 FVMSAPDIRHLPSDTGIEVAFAGRSNAGKSSALNTLTNQK-SLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAEVPE   79 (188)
T ss_dssp             CEEEESSGGGSSCSCSEEEEEEECTTSSHHHHHTTTCCC--------------CCEEEEEEETTEEEEECCCCC------
T ss_pred             CeeCCCChhHCCCccCCEEEEECCCCCCHHHHHHHHhCCC-ceEeecccccceeeccceecccccceeeeecccccchhh
Confidence            6788889999999999999999999999999999999874 23233332332 233333333444445544432221111


Q ss_pred             HHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhc
Q 029158           85 EVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKAN  164 (198)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~  164 (198)
                      ............+......++.++.+.++..+........+..+.....++++++||+|+....+.....+.+++.+...
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~k~D~~~~~~~~~~~~~~~~~l~~~  159 (188)
T d1puia_          80 EMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLASGARKAQLNMVREAVLAF  159 (188)
T ss_dssp             CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGG
T ss_pred             hhhhhhhhhhhhhhhhhhheeEEEEeecccccchhHHHHHHHHhhhccccccchhhhhhccCHHHHHHHHHHHHHHHHhh
Confidence            11222222333333444456677788888877777777778888888899999999999999888877777777776554


Q ss_pred             cCCCCCcEEeccCCCCChHHHHHHHHHhh
Q 029158          165 NSLVQPVMMVSSKSGAGIRSLRTVLSKIA  193 (198)
Q Consensus       165 ~~~~~~v~~~Sa~~~~gi~~l~~~i~~~~  193 (198)
                      . ...+++++||++|+|+++|++.|.+.+
T Consensus       160 ~-~~~~~i~vSA~~g~Gid~L~~~i~~~~  187 (188)
T d1puia_         160 N-GDVQVETFSSLKKQGVDKLRQKLDTWF  187 (188)
T ss_dssp             C-SCEEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             C-CCCcEEEEeCCCCCCHHHHHHHHHHHh
Confidence            3 356899999999999999999998765

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=99.94  E-value=8.5e-26  Score=159.90  Aligned_cols=161  Identities=20%  Similarity=0.286  Sum_probs=120.5

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCc-cceeecCCCCceeEEEEE--------------------------EeCCceEEEe
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQW-GVVRTSDKPGLTQTINFF--------------------------KLGTKLCLVD   73 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~~-~~~~~~~~~~~t~~~~~~--------------------------~~~~~~~iiD   73 (198)
                      ..+|+++|..++|||||+++|++.. .........+.|....+.                          .....+.++|
T Consensus         5 ~inIaiiGhvd~GKSTL~~~L~g~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iD   84 (195)
T d1kk1a3           5 EVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFID   84 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEEE
T ss_pred             cEEEEEEeccCCcHHHHHHHHHhhhhhhhHHHHHcCcccccchhhhhhhccchhhhccceeeeeeeeeeecCceeEeeec
Confidence            3478999999999999999998742 111111122222221100                          0013489999


Q ss_pred             CCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCc-CcHHHHHHHHhhCCc-EEEEEeccCCCCcHHHH
Q 029158           74 LPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKP-RDHELISLMERSQTK-YQVVLTKTDTVFPIDVA  151 (198)
Q Consensus        74 tpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~-~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~~~~~  151 (198)
                      |||+             ..+.....+....+|++++++|+.++... ...+.+..+...+.| +++++||+|+.+.....
T Consensus        85 tPGh-------------~~f~~~~~~~~~~~d~~ilvvda~~g~~~~~t~e~~~~~~~~~~~~iiv~inK~D~~d~~~~~  151 (195)
T d1kk1a3          85 APGH-------------EALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELVDKEKAL  151 (195)
T ss_dssp             CSSH-------------HHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHHHH
T ss_pred             cchh-------------hhhhHHhhcccccccccccccchhhhhhhhhhHHHHHHHHHhcCccceeeeecccchhhHHHH
Confidence            9996             67788888888889999999999998644 356677777776755 78899999999987777


Q ss_pred             HHHHHHHHHHHhccCCCCCcEEeccCCCCChHHHHHHHHHhhc
Q 029158          152 RRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR  194 (198)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~v~~~Sa~~~~gi~~l~~~i~~~~~  194 (198)
                      +....+.+.+.......+|++|+||++|+|+++|++.|.+.++
T Consensus       152 ~~~~~~~~~~~~~~~~~~~iIpiSA~~G~ni~~Ll~~I~~~iP  194 (195)
T d1kk1a3         152 ENYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIP  194 (195)
T ss_dssp             HHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHhccccCCCCeEEEEECCCCCCHHHHHHHHHHHCc
Confidence            7777777777766666789999999999999999999988764

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.94  E-value=1.1e-25  Score=160.45  Aligned_cols=160  Identities=21%  Similarity=0.275  Sum_probs=120.4

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCccceeecCC--------CC-ceeEEE------------------------EEEeCC
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDK--------PG-LTQTIN------------------------FFKLGT   67 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~--------~~-~t~~~~------------------------~~~~~~   67 (198)
                      ..+|+++|..++|||||+++|++... ......        .+ .+....                        ......
T Consensus         8 ~ini~iiGhVd~GKSTL~~~L~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r   86 (205)
T d2qn6a3           8 EVNIGVVGHVDHGKTTLVQAITGIWT-SKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLR   86 (205)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHSCCC---------------CEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEE
T ss_pred             CeEEEEEEccCCcHHHHHHHHHhhhc-hhhHHHHHhhcccccchhhhhhhhhhhhhhhheeeecccceeeeeeccccceE
Confidence            35899999999999999999987420 000000        00 000000                        000113


Q ss_pred             ceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCC-CcCcHHHHHHHHhhCC-cEEEEEeccCCC
Q 029158           68 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGV-KPRDHELISLMERSQT-KYQVVLTKTDTV  145 (198)
Q Consensus        68 ~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~-~~~~~~~~~~~~~~~~-p~iiv~nK~Dl~  145 (198)
                      .+.++||||+             .++..+.......+|.+++|+|+.+++ .....+.+..+...++ |+|+++||+|+.
T Consensus        87 ~~~iiD~PGH-------------~df~~~~~~~~~~ad~ailvVda~~gi~~~~t~e~~~~~~~~~i~~iIV~vNK~Dl~  153 (205)
T d2qn6a3          87 RISFIDAPGH-------------EVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVV  153 (205)
T ss_dssp             EEEEEECSCH-------------HHHHHHHHHTSSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTTCCCEEEEEECGGGS
T ss_pred             EEEEeccchH-------------HHHHhhhhcceeccccccccccccccccchhHHHHHHHHHHcCCceeeeccccCCCc
Confidence            5899999997             677888888999999999999999987 4455677887777775 788999999999


Q ss_pred             CcHHHHHHHHHHHHHHHhccCCCCCcEEeccCCCCChHHHHHHHHHhhc
Q 029158          146 FPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR  194 (198)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~~~gi~~l~~~i~~~~~  194 (198)
                      ...........+.+.+........|++++||++|.|+++|++.|.+..+
T Consensus       154 ~~~~~~~~~~~~~~~l~~~~~~~~p~ipiSA~~g~nI~~L~e~i~~~ip  202 (205)
T d2qn6a3         154 SKEEALSQYRQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIK  202 (205)
T ss_dssp             CHHHHHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             cchHHHHHHHHHHHHhccccCCCCeEEEEeCCCCCChHHHHHHHHhhCC
Confidence            9887777777777777766666789999999999999999999988765

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=99.93  E-value=9.1e-26  Score=154.96  Aligned_cols=154  Identities=23%  Similarity=0.267  Sum_probs=108.2

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE---EEEeCCceEEEeCCCCccccchhHHHHHHHHHHHHHH
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV   98 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~---~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~   98 (198)
                      .+|+++|.+|+|||||+|+|++. ........++++....   +...+.++.++|+||+.+......     ........
T Consensus         2 ~kI~lvG~~nvGKSsLin~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~-----~~~~~~~~   75 (161)
T d2gj8a1           2 MKVVIAGRPNAGKSSLLNALAGR-EAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVE-----RIGIERAW   75 (161)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTS-CCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHHH-----HHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC-CceEeecccccccceEeeeeeccCceeeeccccccccccccch-----hHHHHHHH
Confidence            47999999999999999999987 4455666666665432   334477899999999876532221     11122222


Q ss_pred             hcccccceEEEEEeCCCCCCcCcHHHHH-HHHh--hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEec
Q 029158           99 STRVSLKRVCLLIDTKWGVKPRDHELIS-LMER--SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVS  175 (198)
Q Consensus        99 ~~~~~~d~vi~v~d~~~~~~~~~~~~~~-~~~~--~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~S  175 (198)
                      .....+|++++++|+.........+.+. .+..  .+.|+++|+||+|+......            .......+++++|
T Consensus        76 ~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~iilv~NK~Dl~~~~~~------------~~~~~~~~~~~iS  143 (161)
T d2gj8a1          76 QEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLG------------MSEVNGHALIRLS  143 (161)
T ss_dssp             HHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHHCCCCE------------EEEETTEEEEECC
T ss_pred             HHHHhccccceeeccccccchhhhhhhhhhhhhcccccceeeccchhhhhhhHHH------------HHHhCCCcEEEEE
Confidence            3334589999999998866655555533 3332  26999999999998654311            0112257899999


Q ss_pred             cCCCCChHHHHHHHHHhh
Q 029158          176 SKSGAGIRSLRTVLSKIA  193 (198)
Q Consensus       176 a~~~~gi~~l~~~i~~~~  193 (198)
                      |++|+|+++|+++|.+.+
T Consensus       144 Ak~~~gi~~L~~~l~~~l  161 (161)
T d2gj8a1         144 ARTGEGVDVLRNHLKQSM  161 (161)
T ss_dssp             TTTCTTHHHHHHHHHHHC
T ss_pred             CCCCCCHHHHHHHHHhhC
Confidence            999999999999998753

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.93  E-value=1.3e-26  Score=159.11  Aligned_cols=156  Identities=21%  Similarity=0.303  Sum_probs=110.4

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEE---EEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHHHH
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---NFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV   98 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~---~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~   98 (198)
                      .+|+++|.+|+|||||+|+|++. .....+..++++...   .+...+..+.++||||+.........    ......++
T Consensus         1 ikI~liG~~n~GKSSLin~l~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~----~~~~~~~~   75 (160)
T d1xzpa2           1 LRMVIVGKPNVGKSTLLNRLLNE-DRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVE----RLGIERTL   75 (160)
T ss_dssp             EEEEEECCHHHHTCHHHHHHHHH-TBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCC----CCCHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC-CceeeeccccccccceeEEEEeCCeeEEeccccccccCCccHHH----HHHHHHHH
Confidence            37999999999999999999987 556677777776543   34444678999999997543211110    00112233


Q ss_pred             hcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEeccCC
Q 029158           99 STRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKS  178 (198)
Q Consensus        99 ~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~  178 (198)
                      .....+|++++|+|++++....+..+...+  ...++++++||+|+.+..+.++....    +    ....+++++||++
T Consensus        76 ~~~~~ad~ii~v~d~~~~~~~~~~~~~~~~--~~~~~i~~~~k~d~~~~~~~~~~~~~----~----~~~~~~~~vSA~~  145 (160)
T d1xzpa2          76 QEIEKADIVLFVLDASSPLDEEDRKILERI--KNKRYLVVINKVDVVEKINEEEIKNK----L----GTDRHMVKISALK  145 (160)
T ss_dssp             HHHHHCSEEEEEEETTSCCCHHHHHHHHHH--TTSSEEEEEEECSSCCCCCHHHHHHH----H----TCSTTEEEEEGGG
T ss_pred             HHHHhCCEEEEEEeCCCCcchhhhhhhhhc--ccccceeeeeeccccchhhhHHHHHH----h----CCCCcEEEEECCC
Confidence            333448999999999987666555554443  36889999999999987654433222    2    2357899999999


Q ss_pred             CCChHHHHHHHHHh
Q 029158          179 GAGIRSLRTVLSKI  192 (198)
Q Consensus       179 ~~gi~~l~~~i~~~  192 (198)
                      |+|+++|+++|.+.
T Consensus       146 g~gi~~L~~~I~ke  159 (160)
T d1xzpa2         146 GEGLEKLEESIYRE  159 (160)
T ss_dssp             TCCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHhc
Confidence            99999999999764

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.93  E-value=2.8e-26  Score=165.97  Aligned_cols=160  Identities=21%  Similarity=0.310  Sum_probs=108.0

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEE---------------------EEEEeCCceEEEeCCCCc
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---------------------NFFKLGTKLCLVDLPGYG   78 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~---------------------~~~~~~~~~~iiDtpG~~   78 (198)
                      +.|.|+++|.+++|||||+++|++.. .. ......++...                     .+...+..+.++||||+.
T Consensus         4 r~p~IaIiGh~d~GKSTL~~~L~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDtPGh~   81 (227)
T d1g7sa4           4 RSPIVSVLGHVDHGKTTLLDHIRGSA-VA-SREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHE   81 (227)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHHH-HS-CC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTS
T ss_pred             CCCEEEEEeCCCccHHHHHHHHHhhc-ch-heecCceeeeccccccccccccccccccccceeeccccccccccccccee
Confidence            34679999999999999999998752 11 11111111110                     011124579999999973


Q ss_pred             cccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHH--------
Q 029158           79 FAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDV--------  150 (198)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~--------  150 (198)
                      +             +..........+|++++|+|+..++...+.+++..+...++|+|+|+||+|+......        
T Consensus        82 ~-------------f~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iivlNK~D~~~~~~~~~~~~~~~  148 (227)
T d1g7sa4          82 A-------------FTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYRTPFVVAANKIDRIHGWRVHEGRPFME  148 (227)
T ss_dssp             C-------------CTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHTTCCEEEEEECGGGSTTCCCCTTCCHHH
T ss_pred             c-------------ccccchhcccccceEEEEEecccCcccchhHHHHHhhcCCCeEEEEEECccCCCchhhhhhHHHHH
Confidence            2             2333445566799999999999999999999999999999999999999998753210        


Q ss_pred             ----------HHHHHHHHHHHHhc---------------cCCCCCcEEeccCCCCChHHHHHHHHHhhc
Q 029158          151 ----------ARRAMQIEESLKAN---------------NSLVQPVMMVSSKSGAGIRSLRTVLSKIAR  194 (198)
Q Consensus       151 ----------~~~~~~~~~~~~~~---------------~~~~~~v~~~Sa~~~~gi~~l~~~i~~~~~  194 (198)
                                ......+.+.....               .....+++++||++|.|+++|++.|....+
T Consensus       149 ~~~~~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~pvSa~~G~gid~Ll~~l~~l~~  217 (227)
T d1g7sa4         149 TFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQ  217 (227)
T ss_dssp             HHTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             hhhcchHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccCCCeEEEeeCCCCCCHHHHHHHHHHHHH
Confidence                      01111111111110               011357999999999999999999877653

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.92  E-value=1.5e-25  Score=157.36  Aligned_cols=159  Identities=18%  Similarity=0.147  Sum_probs=102.9

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEE----eCCceEEEeCCCCccccchhHHHHHHHHHHHHH
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK----LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY   97 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~----~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~   97 (198)
                      +.|+++|++|+|||||+|+|++.+  ..+.+.+++|.......    .+..++++||||+.......      ..+...+
T Consensus         2 ~~VaiiG~~nvGKSSLin~L~~~~--~~~~~~~~~T~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~------~~~~~~~   73 (185)
T d1lnza2           2 ADVGLVGFPSVGKSTLLSVVSSAK--PKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQG------VGLGHQF   73 (185)
T ss_dssp             CCEEEESSTTSSHHHHHHHSEEEC--CEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCT------TTTHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHhCCC--CceecCCCceEeeeeceeEecCCcEEEEecCCCcccCchHH------HHHHHHH
Confidence            579999999999999999999873  34566666665533222    24579999999974321111      1112233


Q ss_pred             HhcccccceEEEEEeCCCCCCcCcHHH---HHHHHh------hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCC
Q 029158           98 VSTRVSLKRVCLLIDTKWGVKPRDHEL---ISLMER------SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLV  168 (198)
Q Consensus        98 ~~~~~~~d~vi~v~d~~~~~~~~~~~~---~~~~~~------~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  168 (198)
                      +.....++.++++++..........+.   ......      .++|+++|+||+|+....+.   .+.+.+.    ....
T Consensus        74 l~~~~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ivv~NK~Dl~~~~~~---~~~~~~~----~~~~  146 (185)
T d1lnza2          74 LRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAEN---LEAFKEK----LTDD  146 (185)
T ss_dssp             HHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHHH---HHHHHHH----CCSC
T ss_pred             HHHHHHhhhhhheeeecccccchhhhhhhhhhhccchhhhhccCCcchhhccccchHhHHHH---HHHHHHH----hccC
Confidence            333344788888887765322222211   111111      25799999999999875422   2222222    2336


Q ss_pred             CCcEEeccCCCCChHHHHHHHHHhhcc
Q 029158          169 QPVMMVSSKSGAGIRSLRTVLSKIARF  195 (198)
Q Consensus       169 ~~v~~~Sa~~~~gi~~l~~~i~~~~~~  195 (198)
                      .+++++||++|+|+++|+++|.+.+..
T Consensus       147 ~~v~~iSA~~g~Gi~~L~~~i~~~L~~  173 (185)
T d1lnza2         147 YPVFPISAVTREGLRELLFEVANQLEN  173 (185)
T ss_dssp             CCBCCCSSCCSSTTHHHHHHHHHHHTS
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhhhh
Confidence            889999999999999999999988753

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=99.92  E-value=1e-24  Score=151.74  Aligned_cols=159  Identities=16%  Similarity=0.158  Sum_probs=104.4

Q ss_pred             CCCCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHH
Q 029158           17 PAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE   96 (198)
Q Consensus        17 ~~~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~   96 (198)
                      ++....+|+++|++|+|||||+++|.+.. .....+..+.+. ..+...+..+.++|++|....          ......
T Consensus        12 ~~~~~~kI~vvG~~~vGKSsLi~~l~~~~-~~~~~~~~~~~~-~~i~~~~~~~~i~d~~g~~~~----------~~~~~~   79 (176)
T d1fzqa_          12 APDQEVRILLLGLDNAGKTTLLKQLASED-ISHITPTQGFNI-KSVQSQGFKLNVWDIGGQRKI----------RPYWRS   79 (176)
T ss_dssp             CCSSCEEEEEEESTTSSHHHHHHHHCCSC-CEEEEEETTEEE-EEEEETTEEEEEEECSSCGGG----------HHHHHH
T ss_pred             CCCCEEEEEEECCCCCCHHHHHHHHhcCC-CCcceeeeeeeE-EEeccCCeeEeEeeccccccc----------hhHHHH
Confidence            44567899999999999999999999873 333333322222 122334678999999995321          233334


Q ss_pred             HHhcccccceEEEEEeCCCCCCcCc-HHHHHHHH----hhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCc
Q 029158           97 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLME----RSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPV  171 (198)
Q Consensus        97 ~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~----~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v  171 (198)
                      ++..   +|++++++|+++.....+ ..++..+.    ..+.|+++|+||+|+....+.....+.+...  .......++
T Consensus        80 ~~~~---~~~ii~v~d~~d~~s~~~~~~~~~~~~~~~~~~~~pillv~nK~Dl~~~~~~~~~~~~~~~~--~~~~~~~~~  154 (176)
T d1fzqa_          80 YFEN---TDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLH--TIRDRVWQI  154 (176)
T ss_dssp             HHTT---CSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGG--GCCSSCEEE
T ss_pred             Hhhc---cceeEEeeccccccchhhhhhhhhhhhhhhccCCCeEEEEEEeccccccccHHHHHHHHHHH--HHHhcCCEE
Confidence            4443   899999999986322222 12222221    2368999999999998765544433333211  122335679


Q ss_pred             EEeccCCCCChHHHHHHHHHh
Q 029158          172 MMVSSKSGAGIRSLRTVLSKI  192 (198)
Q Consensus       172 ~~~Sa~~~~gi~~l~~~i~~~  192 (198)
                      +++||++|+|++++++||.+.
T Consensus       155 ~~~SA~tg~gv~e~~~~l~~~  175 (176)
T d1fzqa_         155 QSCSALTGEGVQDGMNWVCKN  175 (176)
T ss_dssp             EECCTTTCTTHHHHHHHHHHT
T ss_pred             EEEeCCCCCCHHHHHHHHHhc
Confidence            999999999999999999875

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=99.92  E-value=8e-25  Score=154.28  Aligned_cols=161  Identities=18%  Similarity=0.261  Sum_probs=122.3

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCc--------------cceeecCCCCceeEEE---EEEeCCceEEEeCCCCccccch
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQW--------------GVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAK   83 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~~--------------~~~~~~~~~~~t~~~~---~~~~~~~~~iiDtpG~~~~~~~   83 (198)
                      ..+|+++|..++|||||+++|++..              .....+...+.|.+..   +...+..+.++||||+      
T Consensus         3 ~ini~iiGHvd~GKSTL~~~l~~~~~~~~~~~~~~~~~~~~~~~Er~rgiTi~~~~~~~~~~~~~~~~iDtPGh------   76 (196)
T d1d2ea3           3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGH------   76 (196)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSH------
T ss_pred             CcEEEEEeCCCCcHHHHHHHHHHHHHHcCcchhhhhhhcccchhhcCCCccCCcceEEEEeceeeEEeecCcch------
Confidence            3579999999999999999998520              0011122234555533   3344788999999997      


Q ss_pred             hHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCC-cEEEEEeccCCCCcHH-HHHHHHHHHHHH
Q 029158           84 EEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQT-KYQVVLTKTDTVFPID-VARRAMQIEESL  161 (198)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~-p~iiv~nK~Dl~~~~~-~~~~~~~~~~~~  161 (198)
                             .++..+..+....+|++++|+|+.+|+..++.+++..+...++ |+|+++||+|+....+ .+....+++..+
T Consensus        77 -------~~f~~~~~~~~~~aD~allVVda~~G~~~QT~~~~~~a~~~~~~~iIv~iNK~D~~~~~~~~~~i~~~i~~~l  149 (196)
T d1d2ea3          77 -------ADYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADAVQDSEMVELVELEIRELL  149 (196)
T ss_dssp             -------HHHHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHH
T ss_pred             -------HHHHHHHHHHHhhcCeEEEEEEcCCCCchhHHHHHHHHHHhcCCcEEEEEecccccccHHHHHHHHHHHHHHH
Confidence                   6778888899999999999999999999999999999888764 7888999999986543 344555666666


Q ss_pred             Hhcc--CCCCCcEEeccCCC----------CChHHHHHHHHHhhc
Q 029158          162 KANN--SLVQPVMMVSSKSG----------AGIRSLRTVLSKIAR  194 (198)
Q Consensus       162 ~~~~--~~~~~v~~~Sa~~~----------~gi~~l~~~i~~~~~  194 (198)
                      ....  ....|++++||++|          .|+.+|++.|.++.+
T Consensus       150 ~~~~~~~~~~pii~iSa~~g~~~~~~~~~~~~~~~Lldai~~~iP  194 (196)
T d1d2ea3         150 TEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIP  194 (196)
T ss_dssp             HHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSC
T ss_pred             HHhCCCcccCEEEEEEccccccccCcccccCCHHHHHHHHHhhCC
Confidence            5432  23588999999988          688999999887654

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=99.92  E-value=2.9e-24  Score=147.96  Aligned_cols=157  Identities=17%  Similarity=0.120  Sum_probs=100.6

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHHHHhc
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVST  100 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~  100 (198)
                      ..+|+++|++|+|||||+++|.+.. .....+..+.. ...+...+..+.+|||||.             ..+.......
T Consensus         2 ~~ki~ivG~~~~GKTsLi~~l~~~~-~~~~~~t~~~~-~~~~~~~~~~~~~~D~~G~-------------~~~~~~~~~~   66 (165)
T d1ksha_           2 ELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFN-IKTLEHRGFKLNIWDVGGQ-------------KSLRSYWRNY   66 (165)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEE-EEEEEETTEEEEEEEECCS-------------HHHHTTGGGG
T ss_pred             cEEEEEECCCCCCHHHHHHHHcCCC-CCcccceEeee-eeeccccccceeeeecCcc-------------hhhhhHHHhh
Confidence            3589999999999999999998873 32222222111 1223344678999999995             1111122233


Q ss_pred             ccccceEEEEEeCCCCCCcCc-HHH-HHHHH---hhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEec
Q 029158          101 RVSLKRVCLLIDTKWGVKPRD-HEL-ISLME---RSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVS  175 (198)
Q Consensus       101 ~~~~d~vi~v~d~~~~~~~~~-~~~-~~~~~---~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~S  175 (198)
                      ...++++++++|+.+.....+ .+. ...+.   ..+.|+++|+||+|+.......+....+.  .........+++++|
T Consensus        67 ~~~~~~~i~v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~--~~~~~~~~~~~~~~S  144 (165)
T d1ksha_          67 FESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALE--LDSIRSHHWRIQGCS  144 (165)
T ss_dssp             CTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTT--GGGCCSSCEEEEECC
T ss_pred             hhhhhcceeeeecccchhHHHHHHhhhhhhhhcccCCCceEEEEeccccccccCHHHHHHHHH--hhhhhcCCCEEEEEE
Confidence            445899999999876322111 122 22222   23689999999999986554443332222  112223356799999


Q ss_pred             cCCCCChHHHHHHHHHhhc
Q 029158          176 SKSGAGIRSLRTVLSKIAR  194 (198)
Q Consensus       176 a~~~~gi~~l~~~i~~~~~  194 (198)
                      |++|+|++++++||.+++.
T Consensus       145 a~~g~gv~e~~~~l~~~i~  163 (165)
T d1ksha_         145 AVTGEDLLPGIDWLLDDIS  163 (165)
T ss_dssp             TTTCTTHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHH
Confidence            9999999999999988754

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=99.91  E-value=1e-24  Score=151.48  Aligned_cols=158  Identities=15%  Similarity=0.091  Sum_probs=101.4

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHHHHh
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS   99 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~   99 (198)
                      ...+|+++|.+|+|||||++++++... .......+... .........+.+||+||....          .   ..+..
T Consensus        11 k~~kIvlvG~~~vGKTSli~rl~~~~~-~~~~~t~~~~~-~~~~~~~~~~~i~D~~g~~~~----------~---~~~~~   75 (173)
T d1e0sa_          11 KEMRILMLGLDAAGKTTILYKLKLGQS-VTTIPTVGFNV-ETVTYKNVKFNVWDVGGQDKI----------R---PLWRH   75 (173)
T ss_dssp             CCEEEEEEEETTSSHHHHHHHTTCCCC-EEEEEETTEEE-EEEEETTEEEEEEEESCCGGG----------H---HHHGG
T ss_pred             CeEEEEEECCCCCCHHHHHHHHhcCCC-CCccceeeeeE-EEeeccceeeEEecCCCcchh----------h---hHHHh
Confidence            357899999999999999999998742 22111111111 122233578999999996432          1   12223


Q ss_pred             cccccceEEEEEeCCCCCCcC--cHHHHHHHHh---hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEe
Q 029158          100 TRVSLKRVCLLIDTKWGVKPR--DHELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMV  174 (198)
Q Consensus       100 ~~~~~d~vi~v~d~~~~~~~~--~~~~~~~~~~---~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  174 (198)
                      ....++++++|+|++......  ..++...++.   ...|+++|+||+|+.......+....+.  +.......++++++
T Consensus        76 ~~~~~~~ii~v~D~s~~~~~~~~~~~l~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~i~~~~~--~~~~~~~~~~~~e~  153 (173)
T d1e0sa_          76 YYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLG--LTRIRDRNWYVQPS  153 (173)
T ss_dssp             GTTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHTT--GGGCCSSCEEEEEC
T ss_pred             hhcccceEEEEEecccchhHHHHHHHHHHHhhhcccccceeeeeeecccccccccHHHHHHHHH--HHHHHhCCCEEEEe
Confidence            344599999999997521111  1222233322   3689999999999987544433333221  12223335678999


Q ss_pred             ccCCCCChHHHHHHHHHhhc
Q 029158          175 SSKSGAGIRSLRTVLSKIAR  194 (198)
Q Consensus       175 Sa~~~~gi~~l~~~i~~~~~  194 (198)
                      ||++|+|++++++||.+.++
T Consensus       154 SA~tg~gv~e~~~~l~~~~k  173 (173)
T d1e0sa_         154 CATSGDGLYEGLTWLTSNYK  173 (173)
T ss_dssp             BTTTTBTHHHHHHHHHHHCC
T ss_pred             eCCCCcCHHHHHHHHHHhcC
Confidence            99999999999999988753

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=99.91  E-value=4e-24  Score=147.19  Aligned_cols=153  Identities=16%  Similarity=0.129  Sum_probs=99.7

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE---EEEeCCceEEEeCCCCccccchhHHHHHHHHHHHHHH
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV   98 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~---~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~   98 (198)
                      .+|+++|++|+|||||+++|.+.+.   ...+. +|....   +...+..+.+||+||...          +......++
T Consensus         3 ~ki~i~G~~~~GKTsLl~~l~~~~~---~~~~~-~T~~~~~~~~~~~~~~~~i~D~~G~~~----------~~~~~~~~~   68 (164)
T d1zd9a1           3 MELTLVGLQYSGKTTFVNVIASGQF---NEDMI-PTVGFNMRKITKGNVTIKLWDIGGQPR----------FRSMWERYC   68 (164)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSCC---CCSCC-CCCSEEEEEEEETTEEEEEEEECCSHH----------HHTTHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHcCCC---CCccc-ccceeeeeeeeeeeEEEEEeecccccc----------ccccccccc
Confidence            5899999999999999999988731   22222 232222   233467899999999511          122223333


Q ss_pred             hcccccceEEEEEeCCCCCCcCc-HHHHH-HHH---hhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEE
Q 029158           99 STRVSLKRVCLLIDTKWGVKPRD-HELIS-LME---RSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMM  173 (198)
Q Consensus        99 ~~~~~~d~vi~v~d~~~~~~~~~-~~~~~-~~~---~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  173 (198)
                      .   .++++++++|+.....-.. ..++. .+.   ..+.|+++|+||+|+....+..+..+.+..  ........++++
T Consensus        69 ~---~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pi~lv~nK~Dl~~~~~~~~i~~~~~~--~~~~~~~~~~~e  143 (164)
T d1zd9a1          69 R---GVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNL--SAIQDREICCYS  143 (164)
T ss_dssp             T---TCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTG--GGCCSSCEEEEE
T ss_pred             c---ccchhhcccccccccccchhhhhhhhhhhhhcccCCcEEEEEeccccchhhhHHHHHHHHHH--HHHHhCCCEEEE
Confidence            3   3899999999975321111 12222 222   226899999999999866554443333321  122233568899


Q ss_pred             eccCCCCChHHHHHHHHHhh
Q 029158          174 VSSKSGAGIRSLRTVLSKIA  193 (198)
Q Consensus       174 ~Sa~~~~gi~~l~~~i~~~~  193 (198)
                      +||++|+|++++++||.+++
T Consensus       144 ~Sa~~g~gv~e~~~~l~~~~  163 (164)
T d1zd9a1         144 ISCKEKDNIDITLQWLIQHS  163 (164)
T ss_dssp             CCTTTCTTHHHHHHHHHHTC
T ss_pred             EeCcCCcCHHHHHHHHHHcc
Confidence            99999999999999999865

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=99.91  E-value=4.5e-24  Score=149.34  Aligned_cols=164  Identities=18%  Similarity=0.158  Sum_probs=104.0

Q ss_pred             CCCCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHH
Q 029158           17 PAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE   96 (198)
Q Consensus        17 ~~~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~   96 (198)
                      ......+|+++|.+|+|||||+++|.+.. .....+..+... ......+..+.+|||||....          ..+...
T Consensus        13 ~~~k~~KI~lvG~~~vGKTsLi~~l~~~~-~~~~~~t~~~~~-~~~~~~~~~~~i~D~~g~~~~----------~~~~~~   80 (182)
T d1moza_          13 GSNKELRILILGLDGAGKTTILYRLQIGE-VVTTKPTIGFNV-ETLSYKNLKLNVWDLGGQTSI----------RPYWRC   80 (182)
T ss_dssp             TCSSCEEEEEEEETTSSHHHHHHHTCCSE-EEEECSSTTCCE-EEEEETTEEEEEEEEC----C----------CTTGGG
T ss_pred             CCCceEEEEEECCCCCCHHHHHHHHhcCC-CCccccccceEE-EEEeeCCEEEEEEeccccccc----------chhHHh
Confidence            45567899999999999999999998873 333333222221 222334678999999996321          111112


Q ss_pred             HHhcccccceEEEEEeCCCCCCcCc-HHHHHHH-Hh---hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCc
Q 029158           97 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLM-ER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPV  171 (198)
Q Consensus        97 ~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~-~~---~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v  171 (198)
                      +   ...+|++++++|+++...... ..++... ..   .+.|+++|+||+|+....+.++..+.+.  .........++
T Consensus        81 ~---~~~~~~ii~v~d~~d~~s~~~~~~~l~~~~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~--~~~~~~~~~~~  155 (182)
T d1moza_          81 Y---YADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELN--LVELKDRSWSI  155 (182)
T ss_dssp             T---TTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTT--TTTCCSSCEEE
T ss_pred             h---hccceeEEEEeeecccccchhHHHHHHHHHHhhccCCcceEEEEEeeccccccCHHHHHHHHH--HHHHhhCCCEE
Confidence            2   234899999999987433222 2233322 21   2589999999999976544333322221  11122335679


Q ss_pred             EEeccCCCCChHHHHHHHHHhhcccc
Q 029158          172 MMVSSKSGAGIRSLRTVLSKIARFAK  197 (198)
Q Consensus       172 ~~~Sa~~~~gi~~l~~~i~~~~~~~r  197 (198)
                      +++||++|+|+++++++|.+.+...+
T Consensus       156 ~e~SA~~g~gv~e~~~~l~~~i~~~~  181 (182)
T d1moza_         156 VASSAIKGEGITEGLDWLIDVIKEEQ  181 (182)
T ss_dssp             EEEBGGGTBTHHHHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHcC
Confidence            99999999999999999999886544

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=5e-24  Score=147.27  Aligned_cols=154  Identities=14%  Similarity=0.039  Sum_probs=92.8

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEE--EEeCCceEEEeCCCCccccchhHHHHHHHHHHHHHHh
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF--FKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS   99 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~--~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~   99 (198)
                      .+|+++|.+|+|||||++++.+.. .....+..+.+....+  ......+.+|||||...          +..+...++.
T Consensus         2 fKi~lvG~~~vGKTsLi~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~l~i~D~~g~e~----------~~~~~~~~~~   70 (168)
T d2gjsa1           2 YKVLLLGAPGVGKSALARIFGGVE-DGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDG----------GRWLPGHCMA   70 (168)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTC----------CEEEEEEEEETTEEEEEEEEECC-----------------CHHHHHT
T ss_pred             eEEEEECCCCcCHHHHHHHHhCCc-cCCcCCeeeeeecceeeccccccceeeeecccccc----------cceecccchh
Confidence            589999999999999999999873 2211111111111111  12246789999999522          2334445555


Q ss_pred             cccccceEEEEEeCCCCCCcCc-HHHHHHHHh----hCCcEEEEEeccCCCCcHHHH-HHHHHHHHHHHhccCCCCCcEE
Q 029158          100 TRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPIDVA-RRAMQIEESLKANNSLVQPVMM  173 (198)
Q Consensus       100 ~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~----~~~p~iiv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~  173 (198)
                      .   +|++++|+|.++..+-.. ..++..+..    ...|+++|+||+|+....... .....+.+..      ++++++
T Consensus        71 ~---~d~~ilv~d~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~~~~~~~~------~~~~~e  141 (168)
T d2gjsa1          71 M---GDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVF------DCKFIE  141 (168)
T ss_dssp             S---CSEEEEEEETTCHHHHHHHHHHHHHHHHHCC--CCCEEEEEECTTCGGGCCSCHHHHHHHHHHH------TSEEEE
T ss_pred             h---hhhhceeccccccccccccccccchhhcccccccceEEEeecccchhhhcchhHHHHHHHHHhc------CCEEEE
Confidence            4   899999999986322111 234444432    247999999999997643211 1111222211      478999


Q ss_pred             eccCCCCChHHHHHHHHHhhcc
Q 029158          174 VSSKSGAGIRSLRTVLSKIARF  195 (198)
Q Consensus       174 ~Sa~~~~gi~~l~~~i~~~~~~  195 (198)
                      +||++|.|++++++.|.+.+..
T Consensus       142 ~Sak~~~~v~~~f~~l~~~i~~  163 (168)
T d2gjsa1         142 TSAALHHNVQALFEGVVRQIRL  163 (168)
T ss_dssp             CBTTTTBSHHHHHHHHHHHHHH
T ss_pred             EeCCCCcCHHHHHHHHHHHHHH
Confidence            9999999999999999876543

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.90  E-value=9.1e-24  Score=150.00  Aligned_cols=144  Identities=19%  Similarity=0.239  Sum_probs=106.5

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCcc----c------ee-----ecCCCCceeEE---EEEEeCCceEEEeCCCCccccc
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQWG----V------VR-----TSDKPGLTQTI---NFFKLGTKLCLVDLPGYGFAYA   82 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~~~----~------~~-----~~~~~~~t~~~---~~~~~~~~~~iiDtpG~~~~~~   82 (198)
                      ..+|+++|.+++|||||+++|+....    .      ..     .....++|.+.   .+...+.++.|+||||+     
T Consensus         3 ~ini~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiTi~~~~~~~~~~~~~i~iiDtPGh-----   77 (204)
T d2c78a3           3 HVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGH-----   77 (204)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCS-----
T ss_pred             CeEEEEEeCCCCcHHHHHHHHHHHhhhccCCcchhhhhhcccchHHhcCCeEEEeeEEEEEeCCeEEEEEeCCCc-----
Confidence            35899999999999999999974210    0      00     00111455443   34455789999999998     


Q ss_pred             hhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCc-EEEEEeccCCCCcHH-HHHHHHHHHHH
Q 029158           83 KEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKTDTVFPID-VARRAMQIEES  160 (198)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~~~-~~~~~~~~~~~  160 (198)
                              .++..+.+.....+|++++|+|+.+|+..++.+++..+...++| +++++||+|+.+..+ .++..+.+++.
T Consensus        78 --------~df~~~~~~~~~~aD~avlVvda~~Gv~~qt~~~~~~~~~~gi~~iiv~iNK~D~~~~~~~~~~~~~~i~~~  149 (204)
T d2c78a3          78 --------ADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDL  149 (204)
T ss_dssp             --------GGGHHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHTTCCCEEEEEECGGGCCCHHHHHHHHHHHHHH
T ss_pred             --------hhhHHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEEecccCCCHHHHHHHHHHHHHH
Confidence                    45566778888889999999999999999999999999998987 677899999986543 45556677766


Q ss_pred             HHhcc--CCCCCcEEeccC
Q 029158          161 LKANN--SLVQPVMMVSSK  177 (198)
Q Consensus       161 ~~~~~--~~~~~v~~~Sa~  177 (198)
                      +....  ....++++.|+.
T Consensus       150 l~~~~~~~~~i~~i~~sa~  168 (204)
T d2c78a3         150 LNQYEFPGDEVPVIRGSAL  168 (204)
T ss_dssp             HHHTTSCTTTSCEEECCHH
T ss_pred             HHhcCCCcccceeeeeech
Confidence            65433  234778888875

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.90  E-value=1.2e-23  Score=144.77  Aligned_cols=152  Identities=15%  Similarity=0.086  Sum_probs=97.5

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeE-EEEEEe--CCceEEEeCCCCccccchhHHHHHHHHHHHHHH
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT-INFFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV   98 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~-~~~~~~--~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~   98 (198)
                      .+|+++|.+|+|||||+++|++........+..+.+.. ......  ...+.+|||+|.....          .+...++
T Consensus         3 iKv~liG~~~vGKSsLi~rl~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~----------~~~~~~~   72 (164)
T d1z2aa1           3 IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFD----------AITKAYY   72 (164)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTT----------CCCHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccceeeeeecCceeeeeeeccCCccchh----------hhhhhhh
Confidence            58999999999999999999976322222222222222 122221  3578999999964321          1122333


Q ss_pred             hcccccceEEEEEeCCCCCCcCc-HHHHHHHHhh--CCcEEEEEeccCCCCcHHH--HHHHHHHHHHHHhccCCCCCcEE
Q 029158           99 STRVSLKRVCLLIDTKWGVKPRD-HELISLMERS--QTKYQVVLTKTDTVFPIDV--ARRAMQIEESLKANNSLVQPVMM  173 (198)
Q Consensus        99 ~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~~--~~p~iiv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~~v~~  173 (198)
                      .   .+|++++|+|..+..+... ..++..+.+.  +.|+++|+||+|+......  ++. ..+.+..      ++++++
T Consensus        73 ~---~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~iilVgnK~Dl~~~~~v~~~~~-~~~~~~~------~~~~~e  142 (164)
T d1z2aa1          73 R---GAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLDDSCIKNEEA-EGLAKRL------KLRFYR  142 (164)
T ss_dssp             T---TCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGGGGCSSCHHHH-HHHHHHH------TCEEEE
T ss_pred             c---cCceEEEEEeccchhhhhhcccccccccccCCCceEEEeeccCCcccceeeeehhh-HHHHHHc------CCEEEE
Confidence            3   3899999999986332222 2345555433  7999999999999754321  111 2222221      478999


Q ss_pred             eccCCCCChHHHHHHHHHhh
Q 029158          174 VSSKSGAGIRSLRTVLSKIA  193 (198)
Q Consensus       174 ~Sa~~~~gi~~l~~~i~~~~  193 (198)
                      +||++|.|+++++++|.+.+
T Consensus       143 ~Sak~g~~v~e~f~~l~~~~  162 (164)
T d1z2aa1         143 TSVKEDLNVSEVFKYLAEKH  162 (164)
T ss_dssp             CBTTTTBSSHHHHHHHHHHH
T ss_pred             eccCCCcCHHHHHHHHHHHH
Confidence            99999999999999987653

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=5.2e-24  Score=147.85  Aligned_cols=158  Identities=15%  Similarity=0.115  Sum_probs=101.4

Q ss_pred             CCCCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE---EEE--eCCceEEEeCCCCccccchhHHHHHHH
Q 029158           17 PAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFK--LGTKLCLVDLPGYGFAYAKEEVKDAWE   91 (198)
Q Consensus        17 ~~~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~---~~~--~~~~~~iiDtpG~~~~~~~~~~~~~~~   91 (198)
                      |+....+|+++|.+|+|||||+++++++.   ....+.++..+..   +..  ....+.+|||+|.....          
T Consensus         2 ~~~~~~Kv~lvG~~~vGKTsLi~r~~~~~---f~~~~~~t~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~----------   68 (173)
T d2fn4a1           2 PPSETHKLVVVGGGGVGKSALTIQFIQSY---FVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFG----------   68 (173)
T ss_dssp             CSSCEEEEEEEECTTSSHHHHHHHHHHSS---CCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTS----------
T ss_pred             CCCCeEEEEEECCCCcCHHHHHHHHHhCC---CCcccccccccceeeEeccCCeeeeeeccccccccccc----------
Confidence            45566799999999999999999999873   2333444433321   111  23578899999975431          


Q ss_pred             HHHHHHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHH----hhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccC
Q 029158           92 ELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLME----RSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNS  166 (198)
Q Consensus        92 ~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~----~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~  166 (198)
                      .....++..   +|++++|+|.++..+... ..++..+.    ..+.|+++|+||+|+........  +..++....   
T Consensus        69 ~~~~~~~~~---~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~~~~--~~~~~~~~~---  140 (173)
T d2fn4a1          69 AMREQYMRA---GHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPR--SEASAFGAS---  140 (173)
T ss_dssp             CCHHHHHHH---CSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCH--HHHHHHHHH---
T ss_pred             cccchhhcc---ceeeeeecccccccccchhhhhhHHHHHHhccCCCceEEEEEeechhhccccch--hhhhHHHHh---
Confidence            111223332   899999999986322221 23333332    23689999999999875422110  112222221   


Q ss_pred             CCCCcEEeccCCCCChHHHHHHHHHhhcc
Q 029158          167 LVQPVMMVSSKSGAGIRSLRTVLSKIARF  195 (198)
Q Consensus       167 ~~~~v~~~Sa~~~~gi~~l~~~i~~~~~~  195 (198)
                      .+.+++++||++|.|++++++.|.+.+..
T Consensus       141 ~~~~~~e~Sak~g~gv~e~f~~l~~~i~k  169 (173)
T d2fn4a1         141 HHVAYFEASAKLRLNVDEAFEQLVRAVRK  169 (173)
T ss_dssp             TTCEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             cCCEEEEEeCCCCcCHHHHHHHHHHHHHH
Confidence            24789999999999999999999987654

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.90  E-value=4.3e-23  Score=142.62  Aligned_cols=152  Identities=17%  Similarity=0.135  Sum_probs=96.5

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEe---CCceEEEeCCCCccccchhHHHHHHHHHHHHHH
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV   98 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~   98 (198)
                      .+|+++|.+|+|||||+++|.+........+..+.+........   ...+.+|||||...          +..+...++
T Consensus         6 ~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~wDt~G~e~----------~~~~~~~~~   75 (169)
T d3raba_           6 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQER----------YRTITTAYY   75 (169)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGG----------GHHHHHTTT
T ss_pred             EEEEEECCCCcCHHHHHHHHHcCCCCcccccccccceeeEEEEeecceEEEEEEECCCchh----------hHHHHHHHH
Confidence            57999999999999999999987422222222322222222222   35689999999522          122333333


Q ss_pred             hcccccceEEEEEeCCCCCCcCc-HHHHHHHHh---hCCcEEEEEeccCCCCcHHH--HHHHHHHHHHHHhccCCCCCcE
Q 029158           99 STRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDV--ARRAMQIEESLKANNSLVQPVM  172 (198)
Q Consensus        99 ~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~---~~~p~iiv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~~v~  172 (198)
                         ..+|++++|+|..+..+... ..++.....   ...|+++|+||+|+......  ++. ..+.+..      +.+++
T Consensus        76 ---~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~v~~~~~-~~~~~~~------~~~~~  145 (169)
T d3raba_          76 ---RGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERG-RQLADHL------GFEFF  145 (169)
T ss_dssp             ---TTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCSCCEEEEEEECTTCGGGCCSCHHHH-HHHHHHH------TCEEE
T ss_pred             ---hcCCEEEEEEECccchhhhhhhhhhhhhhcccCCcceEEEEEeecccccccccchhhh-HHHHHHc------CCEEE
Confidence               34899999999986322222 223333332   25889999999998754321  121 1222111      46899


Q ss_pred             EeccCCCCChHHHHHHHHHhh
Q 029158          173 MVSSKSGAGIRSLRTVLSKIA  193 (198)
Q Consensus       173 ~~Sa~~~~gi~~l~~~i~~~~  193 (198)
                      ++||++|.|+++++++|.+.+
T Consensus       146 e~Sak~g~gv~e~f~~l~~~i  166 (169)
T d3raba_         146 EASAKDNINVKQTFERLVDVI  166 (169)
T ss_dssp             ECBTTTTBSHHHHHHHHHHHH
T ss_pred             EecCCCCcCHHHHHHHHHHHH
Confidence            999999999999999998865

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=5.8e-23  Score=141.54  Aligned_cols=151  Identities=17%  Similarity=0.155  Sum_probs=97.8

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeE---EEEEE--eCCceEEEeCCCCccccchhHHHHHHHHHHHH
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT---INFFK--LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE   96 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~---~~~~~--~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~   96 (198)
                      .+|+++|.+|+|||||+++|++...   ...+.++...   .....  ....+.+||++|....          ......
T Consensus         4 ~Ki~viG~~~vGKTsli~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~----------~~~~~~   70 (166)
T d1ctqa_           4 YKLVVVGAGGVGKSALTIQLIQNHF---VDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY----------SAMRDQ   70 (166)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHCCC---CCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGG----------HHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCC---CCccCCccceeeccceeeeceeeeeeeeeccCcccc----------ccchhh
Confidence            5799999999999999999998742   2222222221   11111  1356899999996432          222223


Q ss_pred             HHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHh----hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCc
Q 029158           97 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPV  171 (198)
Q Consensus        97 ~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~----~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v  171 (198)
                      ++..   ++++++|+|..+...... .+++..+..    .+.|+++|+||+|+.......+....+.+..      ++++
T Consensus        71 ~~~~---~~~~iiv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~------~~~~  141 (166)
T d1ctqa_          71 YMRT---GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSY------GIPY  141 (166)
T ss_dssp             HHHH---CSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSSCCEEEEEECTTCSCCCSCHHHHHHHHHHH------TCCE
T ss_pred             hhhc---ccccceeecccccccHHHHHHHHHHHHHhcCCCCCeEEEEecccccccccccHHHHHHHHHHh------CCeE
Confidence            3333   899999999986322222 334444433    2589999999999975432122222222221      4789


Q ss_pred             EEeccCCCCChHHHHHHHHHhhc
Q 029158          172 MMVSSKSGAGIRSLRTVLSKIAR  194 (198)
Q Consensus       172 ~~~Sa~~~~gi~~l~~~i~~~~~  194 (198)
                      +++||++|+|+++++++|.+.+.
T Consensus       142 ~e~Sak~g~gi~e~f~~i~~~i~  164 (166)
T d1ctqa_         142 IETSAKTRQGVEDAFYTLVREIR  164 (166)
T ss_dssp             EECCTTTCTTHHHHHHHHHHHHH
T ss_pred             EEEcCCCCcCHHHHHHHHHHHHH
Confidence            99999999999999999987664

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=99.90  E-value=4.6e-23  Score=142.35  Aligned_cols=153  Identities=13%  Similarity=0.068  Sum_probs=97.1

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEE---EEEE--eCCceEEEeCCCCccccchhHHHHHHHHHHH
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---NFFK--LGTKLCLVDLPGYGFAYAKEEVKDAWEELVK   95 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~---~~~~--~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~   95 (198)
                      ..+|+++|.+|+|||||++++++++   ....+.+|..+.   .+..  ....+.+||++|..+.          ..+..
T Consensus         4 ~~KivlvG~~~vGKTsli~~~~~~~---f~~~~~~T~~~~~~~~~~~~~~~~~l~i~d~~g~~~~----------~~~~~   70 (168)
T d1u8za_           4 LHKVIMVGSGGVGKSALTLQFMYDE---FVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY----------AAIRD   70 (168)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSC---CCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---C----------HHHHH
T ss_pred             eeEEEEECCCCcCHHHHHHHHHhCC---CCcccCCccccccccccccccccccccccccccccch----------hhhhh
Confidence            3589999999999999999999873   233333333221   1111  2457899999996432          23333


Q ss_pred             HHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHh----hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCC
Q 029158           96 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQP  170 (198)
Q Consensus        96 ~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~----~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (198)
                      .++..   +|++++|+|..+..+... ..+++.+.+    .+.|+++|+||+|+........  +..++.....   +++
T Consensus        71 ~~~~~---~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiivgnK~Dl~~~~~v~~--~~~~~~~~~~---~~~  142 (168)
T d1u8za_          71 NYFRS---GEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSV--EEAKNRADQW---NVN  142 (168)
T ss_dssp             HHHHH---CSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCH--HHHHHHHHHH---TCE
T ss_pred             hcccc---cceeEEEeeccchhhhhhHHHHHHHHHHhhCCCCCcEEEEeccccccccccccH--HHHHHHHHHc---CCe
Confidence            44443   899999999986322222 234444432    3689999999999865322110  1112211111   478


Q ss_pred             cEEeccCCCCChHHHHHHHHHhhc
Q 029158          171 VMMVSSKSGAGIRSLRTVLSKIAR  194 (198)
Q Consensus       171 v~~~Sa~~~~gi~~l~~~i~~~~~  194 (198)
                      ++++||++|.|+++++++|.+.+.
T Consensus       143 ~~e~Sak~g~gv~e~f~~l~~~i~  166 (168)
T d1u8za_         143 YVETSAKTRANVDKVFFDLMREIR  166 (168)
T ss_dssp             EEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             EEEEcCCCCcCHHHHHHHHHHHHH
Confidence            999999999999999999887653

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.89  E-value=3.1e-23  Score=144.10  Aligned_cols=155  Identities=12%  Similarity=0.082  Sum_probs=92.4

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEE-e---CCceEEEeCCCCccccchhHHHHHHHHHHHH
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK-L---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE   96 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~-~---~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~   96 (198)
                      ..+|+++|.+|+|||||+++|++........+..+.+....... .   ...+.++||+|...             ....
T Consensus         2 ~~Ki~~vG~~~vGKSsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~-------------~~~~   68 (175)
T d1ky3a_           2 ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQER-------------FQSL   68 (175)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC---------------------
T ss_pred             eEEEEEECCCCcCHHHHHHHHHcCCCCCccCcccccceeeeeeeecCcccccceeeccCCchh-------------hhhH
Confidence            36899999999999999999998742222222222222221111 1   23578999999522             1112


Q ss_pred             HHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHh-------hCCcEEEEEeccCCCCcHHH--HHHHHHHHHHHHhccC
Q 029158           97 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER-------SQTKYQVVLTKTDTVFPIDV--ARRAMQIEESLKANNS  166 (198)
Q Consensus        97 ~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~-------~~~p~iiv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~  166 (198)
                      .......+|++++++|..+..+-.. ..+++.+..       .+.|+++|+||+|+......  .+....+.+   ..  
T Consensus        69 ~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~---~~--  143 (175)
T d1ky3a_          69 GVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAK---SL--  143 (175)
T ss_dssp             --CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHH---HT--
T ss_pred             HHHHhhccceEEEEeecccccccchhhhcchhhhhhhhhcccccCcEEEEecccchhhhhcchhHHHHHHHHH---Hc--
Confidence            2233445899999999986332222 334444432       25799999999999754321  111122222   11  


Q ss_pred             CCCCcEEeccCCCCChHHHHHHHHHhh
Q 029158          167 LVQPVMMVSSKSGAGIRSLRTVLSKIA  193 (198)
Q Consensus       167 ~~~~v~~~Sa~~~~gi~~l~~~i~~~~  193 (198)
                      ...+++++||++|.|+++++++|.+.+
T Consensus       144 ~~~~~~e~SA~~g~gv~e~f~~l~~~~  170 (175)
T d1ky3a_         144 GDIPLFLTSAKNAINVDTAFEEIARSA  170 (175)
T ss_dssp             TSCCEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred             CCCeEEEEeCCCCcCHHHHHHHHHHHH
Confidence            247899999999999999999987654

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=99.89  E-value=9.7e-23  Score=139.16  Aligned_cols=155  Identities=14%  Similarity=0.098  Sum_probs=98.7

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHHHHhcc
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTR  101 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~  101 (198)
                      .+|+++|++|+|||||+++|++++........  .............+.++|+||....          ......++   
T Consensus         1 ikivlvG~~~vGKSsLi~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~d~~g~~~~----------~~~~~~~~---   65 (160)
T d1r8sa_           1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTI--GFNVETVEYKNISFTVWDVGGQDKI----------RPLWRHYF---   65 (160)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCS--SCCEEEEECSSCEEEEEECCCCGGG----------HHHHHHHT---
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccccce--eeEEEEEeeeeEEEEEecCCCcccc----------hhhhhhhh---
Confidence            47999999999999999999987421111111  1122223334678999999996432          22222333   


Q ss_pred             cccceEEEEEeCCCCCCcCc-HHHH-HHHH---hhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEecc
Q 029158          102 VSLKRVCLLIDTKWGVKPRD-HELI-SLME---RSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSS  176 (198)
Q Consensus       102 ~~~d~vi~v~d~~~~~~~~~-~~~~-~~~~---~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa  176 (198)
                      ..++++++++|..+...... ..++ +.+.   ....|+++++||+|+.......+........  .......+++++||
T Consensus        66 ~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~k~d~~~~~~~~~i~~~~~~~--~~~~~~~~~~~~SA  143 (160)
T d1r8sa_          66 QNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLH--SLRHRNWYIQATCA  143 (160)
T ss_dssp             TTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGG--GCSSCCEEEEECBT
T ss_pred             ccceeEEEEEEecChHHHHHHHHHHHHHHHhhcccCceEEEEeecccccccccHHHHHHHHHHH--HHhhCCCEEEEeEC
Confidence            33899999999876322111 1122 2222   2258999999999998765444333222211  22233578999999


Q ss_pred             CCCCChHHHHHHHHHhh
Q 029158          177 KSGAGIRSLRTVLSKIA  193 (198)
Q Consensus       177 ~~~~gi~~l~~~i~~~~  193 (198)
                      ++|+|++++++||.+.+
T Consensus       144 ktg~gi~e~~~~l~~~l  160 (160)
T d1r8sa_         144 TSGDGLYEGLDWLSNQL  160 (160)
T ss_dssp             TTTBTHHHHHHHHHHHC
T ss_pred             CCCCCHHHHHHHHHhcC
Confidence            99999999999998763

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=7.3e-24  Score=146.72  Aligned_cols=149  Identities=13%  Similarity=0.059  Sum_probs=94.1

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCce-eEEE--EEE---eCCceEEEeCCCCccccchhHHHHHHHHHHH
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT-QTIN--FFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVK   95 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t-~~~~--~~~---~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~   95 (198)
                      .+|+++|.+|+|||||+++++++..   ...+.+|. .+..  ...   ....+.+|||+|...          +..+..
T Consensus         4 ~Ki~vvG~~~vGKTsli~~~~~~~f---~~~~~~Ti~~~~~~~~~~~~~~~~~l~i~D~~g~~~----------~~~~~~   70 (170)
T d1i2ma_           4 FKLVLVGDGGTGKTTFVKRHLTGEF---EKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEK----------FGGLRD   70 (170)
T ss_dssp             EEEEEEECTTSSHHHHHHTTC--------CCEEEETTEEEEEEEECBTTCCEEEEEEECTTHHH----------HSSCGG
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCC---Ccccccceeccccccccccccccccccccccccccc----------cceecc
Confidence            4799999999999999999998731   22222221 1111  111   135789999999411          111122


Q ss_pred             HHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHh--hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcE
Q 029158           96 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER--SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVM  172 (198)
Q Consensus        96 ~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~  172 (198)
                      .+   ...+|++++|+|.++..+-.. .+++.....  .+.|+++|+||+|+.......+..    +   .......+++
T Consensus        71 ~~---~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~----~---~~~~~~~~~~  140 (170)
T d1i2ma_          71 GY---YIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSI----V---FHRKKNLQYY  140 (170)
T ss_dssp             GG---TTTCCEEEEEEETTSGGGGTTHHHHHHHHHHHHCSCCEEEEEECCCCSCSCCTTTSH----H---HHSSCSSEEE
T ss_pred             hh---cccccchhhccccccccccchhHHHHHHHhhccCCCceeeecchhhhhhhhhhhHHH----H---HHHHcCCEEE
Confidence            22   334899999999987433222 334433332  269999999999997654322111    1   1123367899


Q ss_pred             EeccCCCCChHHHHHHHHHhh
Q 029158          173 MVSSKSGAGIRSLRTVLSKIA  193 (198)
Q Consensus       173 ~~Sa~~~~gi~~l~~~i~~~~  193 (198)
                      ++||++|+|+++++++|.+.+
T Consensus       141 e~Sak~~~~v~e~f~~l~~~l  161 (170)
T d1i2ma_         141 DISAKSNYNFEKPFLWLARKL  161 (170)
T ss_dssp             EEBTTTTBTTTHHHHHHHHHH
T ss_pred             EEeCCCCCCHHHHHHHHHHHH
Confidence            999999999999999998765

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=5.2e-23  Score=142.47  Aligned_cols=150  Identities=19%  Similarity=0.154  Sum_probs=93.7

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE---EEE--eCCceEEEeCCCCccccchhHHHHHHHHHHHH
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFK--LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE   96 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~---~~~--~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~   96 (198)
                      .+|+++|.+|+|||||+++|++...  .....+.++.+..   +..  ....+.+|||||...          +..+...
T Consensus         6 ~Ki~lvG~~~vGKTsLi~~l~~~~f--~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~----------~~~~~~~   73 (171)
T d2ew1a1           6 FKIVLIGNAGVGKTCLVRRFTQGLF--PPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQER----------FRSITQS   73 (171)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSSC--CTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGG----------GHHHHGG
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCC--CCcccccccceEEEEEEEECCEEEEEEEEECCCchh----------hHHHHHH
Confidence            6899999999999999999998742  1122222223222   111  235688999999522          1222333


Q ss_pred             HHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHh---hCCcEEEEEeccCCCCcHHHH-HHHHHHHHHHHhccCCCCCc
Q 029158           97 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDVA-RRAMQIEESLKANNSLVQPV  171 (198)
Q Consensus        97 ~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~---~~~p~iiv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~v  171 (198)
                      ++   ..+|++++|+|.++...... .+++..+..   ...|+++|+||+|+....... +....+.+..      +.++
T Consensus        74 ~~---~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ilvgnK~D~~~~~~v~~~~~~~~~~~~------~~~~  144 (171)
T d2ew1a1          74 YY---RSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQ------DMYY  144 (171)
T ss_dssp             GS---TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHH------TCCE
T ss_pred             HH---hccceEEEeeecccchhhhhhhhhhhhhcccccccccEEEEEeecccccccchhhhHHHHHHHhC------CCEE
Confidence            33   34899999999876322211 233333332   258999999999987543211 1112222211      4789


Q ss_pred             EEeccCCCCChHHHHHHHHHh
Q 029158          172 MMVSSKSGAGIRSLRTVLSKI  192 (198)
Q Consensus       172 ~~~Sa~~~~gi~~l~~~i~~~  192 (198)
                      +++||++|+|+++++.+|...
T Consensus       145 ~~~SAktg~gV~e~f~~l~~~  165 (171)
T d2ew1a1         145 LETSAKESDNVEKLFLDLACR  165 (171)
T ss_dssp             EECCTTTCTTHHHHHHHHHHH
T ss_pred             EEEccCCCCCHHHHHHHHHHH
Confidence            999999999999998876644

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=7e-23  Score=140.83  Aligned_cols=152  Identities=18%  Similarity=0.157  Sum_probs=97.9

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCce-eEE--EEEEe---CCceEEEeCCCCccccchhHHHHHHHHHHH
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT-QTI--NFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVK   95 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t-~~~--~~~~~---~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~   95 (198)
                      .+|+++|.+|+|||||++++.+.+.   ...+.++. ...  .....   ...+.+|||+|....          .....
T Consensus         1 fKv~vvG~~~vGKTsLi~r~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~----------~~~~~   67 (164)
T d1yzqa1           1 FKLVFLGEQSVGKTSLITRFMYDSF---DNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERF----------RSLIP   67 (164)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHSCC---CSSCCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGG----------GGGHH
T ss_pred             CEEEEECCCCcCHHHHHHHHHhCCC---CCccccceeeeccceeeccCCCceeeeecccCCcchh----------ccchH
Confidence            3799999999999999999998742   22222222 221  11111   356789999996432          22233


Q ss_pred             HHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHh---hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCc
Q 029158           96 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPV  171 (198)
Q Consensus        96 ~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~---~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v  171 (198)
                      .++..   +|++++++|..+..+... ..++..+..   .+.|+++|+||+|+.......  .+..++....   ..+++
T Consensus        68 ~~~~~---~~~~ilv~d~~~~~s~~~i~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~~~--~~~~~~~~~~---~~~~~  139 (164)
T d1yzqa1          68 SYIRD---SAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVS--IEEGERKAKE---LNVMF  139 (164)
T ss_dssp             HHHTT---CSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSC--HHHHHHHHHH---TTCEE
T ss_pred             HHhhc---cceEEEeeccccccchhhhHhhHHHHHHhcCCCceEEEEecccchhhhhhhh--HHHHHHHHHH---cCCEE
Confidence            34443   899999999987432222 233333332   368999999999997543211  1122222221   14789


Q ss_pred             EEeccCCCCChHHHHHHHHHhhc
Q 029158          172 MMVSSKSGAGIRSLRTVLSKIAR  194 (198)
Q Consensus       172 ~~~Sa~~~~gi~~l~~~i~~~~~  194 (198)
                      +++||++|+|+++++++|.+.++
T Consensus       140 ~e~SAk~g~~v~e~f~~i~~~l~  162 (164)
T d1yzqa1         140 IETSAKAGYNVKQLFRRVAAALP  162 (164)
T ss_dssp             EECCTTTCTTHHHHHHHHHHHSC
T ss_pred             EEecCCCCcCHHHHHHHHHHhhC
Confidence            99999999999999999998875

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=9.9e-23  Score=141.04  Aligned_cols=155  Identities=14%  Similarity=0.118  Sum_probs=96.5

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE---EEE--eCCceEEEeCCCCccccchhHHHHHHHHHH
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFK--LGTKLCLVDLPGYGFAYAKEEVKDAWEELV   94 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~---~~~--~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~   94 (198)
                      ...+|+++|.+|+|||||++++++..   ....+.++..+..   +..  ....+.+||++|..+.          ....
T Consensus         4 ~~~Ki~lvG~~~vGKTsLi~r~~~~~---f~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~----------~~~~   70 (171)
T d2erya1           4 EKYRLVVVGGGGVGKSALTIQFIQSY---FVTDYDPTIEDSYTKQCVIDDRAARLDILDTAGQEEF----------GAMR   70 (171)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHHSC---CCSSCCTTCCEEEEEEEEETTEEEEEEEEECC----C----------CHHH
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCC---CCcccCcccccceeeeeeecccccccccccccccccc----------cccc
Confidence            34689999999999999999999873   2233333333321   111  2357899999996442          1222


Q ss_pred             HHHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHH----hhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCC
Q 029158           95 KEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLME----RSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQ  169 (198)
Q Consensus        95 ~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~----~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  169 (198)
                      ..++..   +|++++|+|.+...+... ..++..+.    ....|+++|+||+|+........  +...+....   .++
T Consensus        71 ~~~~~~---~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~v~~--~~~~~~~~~---~~~  142 (171)
T d2erya1          71 EQYMRT---GEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVTQ--EEGQQLARQ---LKV  142 (171)
T ss_dssp             HHHHHH---CSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCSEEEEEECTTCTTSCSSCH--HHHHHHHHH---TTC
T ss_pred             cccccc---cceEEEeeccccccchhhHHHHhHHHHhhcccCCCCEEEEEeccchhhhccchH--HHHHHHHHH---cCC
Confidence            233333   899999999986322222 22333222    23589999999999975422111  112222221   247


Q ss_pred             CcEEeccCCCCChHHHHHHHHHhhcc
Q 029158          170 PVMMVSSKSGAGIRSLRTVLSKIARF  195 (198)
Q Consensus       170 ~v~~~Sa~~~~gi~~l~~~i~~~~~~  195 (198)
                      +++++||++|.|++++++.|.+.+..
T Consensus       143 ~~~e~Sak~~~~i~e~f~~l~~~i~k  168 (171)
T d2erya1         143 TYMEASAKIRMNVDQAFHELVRVIRK  168 (171)
T ss_dssp             EEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCcCHHHHHHHHHHHHHH
Confidence            89999999999999999999887653

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=1.7e-22  Score=139.77  Aligned_cols=152  Identities=14%  Similarity=0.073  Sum_probs=97.4

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE--EEEe---CCceEEEeCCCCccccchhHHHHHHHHHHHH
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE   96 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~--~~~~---~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~   96 (198)
                      .+|+++|.+|+|||||++++++..   ....+.+|..+..  ....   ...+.+|||+|....          ......
T Consensus         3 ~Ki~viG~~~vGKTsLi~r~~~~~---f~~~~~~T~~~~~~~~~~~~~~~~~l~~~d~~g~~~~----------~~~~~~   69 (171)
T d2erxa1           3 YRVAVFGAGGVGKSSLVLRFVKGT---FRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQF----------PAMQRL   69 (171)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTCC---CCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSC----------HHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCC---CCCccCcceeeccccceeeccccceeccccccccccc----------cccccc
Confidence            589999999999999999999873   2333444433221  1111   246788999996432          222223


Q ss_pred             HHhcccccceEEEEEeCCCCCCcC-cHHHHHHHHh-----hCCcEEEEEeccCCCCcHHHH-HHHHHHHHHHHhccCCCC
Q 029158           97 YVSTRVSLKRVCLLIDTKWGVKPR-DHELISLMER-----SQTKYQVVLTKTDTVFPIDVA-RRAMQIEESLKANNSLVQ  169 (198)
Q Consensus        97 ~~~~~~~~d~vi~v~d~~~~~~~~-~~~~~~~~~~-----~~~p~iiv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~  169 (198)
                      ++..   +|++++|+|.++..+.. -..++..+..     .+.|+++|+||+|+....... +..+.+.+..      ++
T Consensus        70 ~~~~---a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~v~~~e~~~~~~~~------~~  140 (171)
T d2erxa1          70 SISK---GHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTW------KC  140 (171)
T ss_dssp             HHHH---CSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHH------TC
T ss_pred             cccc---eeEEEEEeecccccchhcccchhhhhhhhhccCCCCcEEEEeecccccccccccHHHHHHHHHHc------CC
Confidence            3333   89999999998622211 1233333322     358999999999986543211 1112222221      47


Q ss_pred             CcEEeccCCCCChHHHHHHHHHhhcc
Q 029158          170 PVMMVSSKSGAGIRSLRTVLSKIARF  195 (198)
Q Consensus       170 ~v~~~Sa~~~~gi~~l~~~i~~~~~~  195 (198)
                      +++++||++|.|++++++.|.+.+..
T Consensus       141 ~~~e~Sak~~~~v~e~f~~l~~~~~~  166 (171)
T d2erxa1         141 AFMETSAKLNHNVKELFQELLNLEKR  166 (171)
T ss_dssp             EEEECBTTTTBSHHHHHHHHHHTCCS
T ss_pred             eEEEEcCCCCcCHHHHHHHHHHHHHH
Confidence            89999999999999999999887653

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=6.7e-23  Score=142.66  Aligned_cols=155  Identities=12%  Similarity=0.010  Sum_probs=97.3

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE---EE--EeCCceEEEeCCCCccccchhHHHHHHHHHHH
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FF--KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVK   95 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~---~~--~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~   95 (198)
                      +.+|+++|.+|+|||||++++.+..   ....+.+|..+..   ..  .....+.+|||+|....          ..+..
T Consensus         2 r~KivvvG~~~vGKTsLi~~~~~~~---f~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~g~~~~----------~~~~~   68 (177)
T d1kmqa_           2 RKKLVIVGDGACGKTCLLIVNSKDQ---FPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDY----------DRLRP   68 (177)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSC---CCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGG----------TTTGG
T ss_pred             cEEEEEECCCCcCHHHHHHHHHhCC---CCCCcCCceeeeccccccccccceeeeccccCccchh----------cccch
Confidence            3589999999999999999999873   2233333322211   11  12356999999996321          11122


Q ss_pred             HHHhcccccceEEEEEeCCCCCCc--CcHHHHHHHHhh--CCcEEEEEeccCCCCcHHHHHHH----------HHHHHHH
Q 029158           96 EYVSTRVSLKRVCLLIDTKWGVKP--RDHELISLMERS--QTKYQVVLTKTDTVFPIDVARRA----------MQIEESL  161 (198)
Q Consensus        96 ~~~~~~~~~d~vi~v~d~~~~~~~--~~~~~~~~~~~~--~~p~iiv~nK~Dl~~~~~~~~~~----------~~~~~~~  161 (198)
                      .++   ..+|++++|+|.++..+-  ....+...+...  +.|+++|+||+|+..........          ++.++..
T Consensus        69 ~~~---~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~e~~~~a  145 (177)
T d1kmqa_          69 LSY---PDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMA  145 (177)
T ss_dssp             GGC---TTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECGGGTTCHHHHHHHHHTTCCCCCHHHHHHHH
T ss_pred             hhc---ccchhhhhhcccchhHHHHHHHHHHHHHHHHhCCCCceEEeeecccccchhhHHHHHHHhhcccccHHHHHHHH
Confidence            233   348999999999863211  112233444432  68999999999998765332211          1112222


Q ss_pred             HhccCCCCCcEEeccCCCCChHHHHHHHHHhh
Q 029158          162 KANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA  193 (198)
Q Consensus       162 ~~~~~~~~~v~~~Sa~~~~gi~~l~~~i~~~~  193 (198)
                      ...  ...+++++||++|.|++++|+.+.+.+
T Consensus       146 ~~~--~~~~~~E~SAkt~~gi~e~F~~i~~~~  175 (177)
T d1kmqa_         146 NRI--GAFGYMECSAKTKDGVREVFEMATRAA  175 (177)
T ss_dssp             HHT--TCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             HHc--CCcEEEEecCCCCcCHHHHHHHHHHHH
Confidence            111  135799999999999999999988754

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=1.6e-22  Score=139.47  Aligned_cols=152  Identities=15%  Similarity=0.089  Sum_probs=97.2

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE---EEE--eCCceEEEeCCCCccccchhHHHHHHHHHHH
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFK--LGTKLCLVDLPGYGFAYAKEEVKDAWEELVK   95 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~---~~~--~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~   95 (198)
                      ..+|+++|.+|+|||||+++++++..   ...+.++..+..   ...  ....+.+||++|....          .....
T Consensus         3 ~~Ki~lvG~~~vGKTsLi~r~~~~~f---~~~~~~t~~~~~~~~~~~~~~~~~l~~~d~~g~~~~----------~~~~~   69 (167)
T d1kaoa_           3 EYKVVVLGSGGVGKSALTVQFVTGTF---IEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQF----------ASMRD   69 (167)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCC---CSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCC----------HHHHH
T ss_pred             eeEEEEECCCCcCHHHHHHHHHhCCC---CCccCCceeeeeeeeeecCcceEeeccccCCCcccc----------ccchH
Confidence            35899999999999999999998742   233333332221   111  1356889999996432          22333


Q ss_pred             HHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHh----hCCcEEEEEeccCCCCcHHHH-HHHHHHHHHHHhccCCCC
Q 029158           96 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPIDVA-RRAMQIEESLKANNSLVQ  169 (198)
Q Consensus        96 ~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~----~~~p~iiv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~  169 (198)
                      .++..   +|++++++|.++...... ..++..+..    .+.|+++|+||+|+....... +....+.+..      +.
T Consensus        70 ~~~~~---a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~------~~  140 (167)
T d1kaoa_          70 LYIKN---GQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEW------GC  140 (167)
T ss_dssp             HHHHH---CSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHH------TS
T ss_pred             HHhhc---ccceeeeeeecchhhhhhhhchhhhhhhhccCCCCCEEEEEEccchhhcccchHHHHHHHHHHc------CC
Confidence            34333   899999999986322111 223333322    258999999999987543221 1111211111      47


Q ss_pred             CcEEeccCCCCChHHHHHHHHHhhc
Q 029158          170 PVMMVSSKSGAGIRSLRTVLSKIAR  194 (198)
Q Consensus       170 ~v~~~Sa~~~~gi~~l~~~i~~~~~  194 (198)
                      +++++||++|.|+++++++|.+.+.
T Consensus       141 ~~~e~Sak~g~~i~e~f~~i~~~i~  165 (167)
T d1kaoa_         141 PFMETSAKSKTMVDELFAEIVRQMN  165 (167)
T ss_dssp             CEEEECTTCHHHHHHHHHHHHHHHH
T ss_pred             eEEEECCCCCcCHHHHHHHHHHHHc
Confidence            8999999999999999999987653

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=99.89  E-value=1.3e-22  Score=145.45  Aligned_cols=155  Identities=17%  Similarity=0.208  Sum_probs=109.2

Q ss_pred             CCCCCCeEEEEcCCCCCHHHHHHHHhcCccc---------eeecCCC----------------------CceeE---EEE
Q 029158           17 PAPDLPEIAFAGRSNVGKSSMLNALTRQWGV---------VRTSDKP----------------------GLTQT---INF   62 (198)
Q Consensus        17 ~~~~~~~v~~vG~~~~GKSsli~~l~~~~~~---------~~~~~~~----------------------~~t~~---~~~   62 (198)
                      .+...++|+++|..++|||||+++|+.....         .......                      +.|.+   ..+
T Consensus         5 ~~~~~~~i~viGHVd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~   84 (222)
T d1zunb3           5 ERKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYF   84 (222)
T ss_dssp             TSCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEE
T ss_pred             ccCCcceEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHhcCccccceeeeeccccchhhhccCCCceeeEEEE
Confidence            3456788999999999999999999742100         0000011                      11111   122


Q ss_pred             EEeCCceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCc-EEEEEec
Q 029158           63 FKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTK  141 (198)
Q Consensus        63 ~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p-~iiv~nK  141 (198)
                      ...+..+.++||||+             ..+..++......+|++++|+|+..|+..++.+.+..+...++| +|+++||
T Consensus        85 ~~~~~~~~iiD~PGH-------------~dfv~~~~~g~~~aD~ailVvda~~G~~~Qt~e~~~~~~~~gv~~iiv~vNK  151 (222)
T d1zunb3          85 STAKRKFIIADTPGH-------------EQYTRNMATGASTCDLAIILVDARYGVQTQTRRHSYIASLLGIKHIVVAINK  151 (222)
T ss_dssp             ECSSEEEEEEECCCS-------------GGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEEEC
T ss_pred             eccceEEEEEeccch-------------hhhhhhhccccccCceEEEEeccccCcccchHHHHHHHHHcCCCEEEEEEEc
Confidence            334568999999998             56677888888889999999999999999999999999988865 7899999


Q ss_pred             cCCCCcHH--HHHHHHHHHHHHHhccC--CCCCcEEeccCCCCChHH
Q 029158          142 TDTVFPID--VARRAMQIEESLKANNS--LVQPVMMVSSKSGAGIRS  184 (198)
Q Consensus       142 ~Dl~~~~~--~~~~~~~~~~~~~~~~~--~~~~v~~~Sa~~~~gi~~  184 (198)
                      +|+.+..+  .....+.+...+.....  ...+++|+||.+|+|+.+
T Consensus       152 ~D~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~IPiSA~~G~ni~~  198 (222)
T d1zunb3         152 MDLNGFDERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVN  198 (222)
T ss_dssp             TTTTTSCHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSS
T ss_pred             cccccccceehhhhHHHHhhhhHhhccCCCceEEEEEEcccCccCCc
Confidence            99986432  23344445544443322  246789999999998843

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=3.4e-22  Score=137.65  Aligned_cols=154  Identities=15%  Similarity=0.111  Sum_probs=95.3

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEE---eCCceEEEeCCCCccccchhHHHHHHHHHHHHHH
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV   98 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~   98 (198)
                      .+|+++|.+|+|||||++++++........+....+.......   ....+.+|||||....          ..+...++
T Consensus         5 ~KivlvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~----------~~~~~~~~   74 (166)
T d1z0fa1           5 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERF----------RAVTRSYY   74 (166)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGT----------CHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCCcccccccccceeEEEEECCEEEEEEEeccCCchhH----------HHHHHHHh
Confidence            5899999999999999999998742221111111111111222   1347899999995321          22333344


Q ss_pred             hcccccceEEEEEeCCCCCCcCc-HHHHHHHHh---hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEe
Q 029158           99 STRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMV  174 (198)
Q Consensus        99 ~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~---~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  174 (198)
                      ..   +|++++|+|..+..+... ..++..+..   ...|+++|+||+|+........  +...+....   .+.+++++
T Consensus        75 ~~---~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~~~~--~~~~~~~~~---~~~~~~e~  146 (166)
T d1z0fa1          75 RG---AAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTY--EEAKQFAEE---NGLLFLEA  146 (166)
T ss_dssp             HT---CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCH--HHHHHHHHH---TTCEEEEC
T ss_pred             cC---CcEEEEEeccCchHHHHHHHHHHHHHHhhccccceEEEEcccccchhhcccHH--HHHHHHHHH---cCCEEEEE
Confidence            33   899999999976322112 233333332   2588999999999864432111  111221111   14789999


Q ss_pred             ccCCCCChHHHHHHHHHhh
Q 029158          175 SSKSGAGIRSLRTVLSKIA  193 (198)
Q Consensus       175 Sa~~~~gi~~l~~~i~~~~  193 (198)
                      ||++|+|++++++.|.+.+
T Consensus       147 Saktg~~v~e~f~~i~~~i  165 (166)
T d1z0fa1         147 SAKTGENVEDAFLEAAKKI  165 (166)
T ss_dssp             CTTTCTTHHHHHHHHHHHH
T ss_pred             eCCCCCCHHHHHHHHHHHh
Confidence            9999999999999987753

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=5.2e-23  Score=144.24  Aligned_cols=159  Identities=12%  Similarity=-0.003  Sum_probs=100.0

Q ss_pred             CCCCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE---EEE--eCCceEEEeCCCCccccchhHHHHHHH
Q 029158           17 PAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFK--LGTKLCLVDLPGYGFAYAKEEVKDAWE   91 (198)
Q Consensus        17 ~~~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~---~~~--~~~~~~iiDtpG~~~~~~~~~~~~~~~   91 (198)
                      |.....+|+++|.+|+|||||++++++..   ....+.+|..+..   ...  ....+.+|||+|....          .
T Consensus         5 ~~~~~~Ki~lvG~~~vGKTsLi~r~~~~~---f~~~~~~Ti~~~~~~~~~~~~~~~~l~i~D~~g~e~~----------~   71 (185)
T d2atxa1           5 PGALMLKCVVVGDGAVGKTCLLMSYANDA---FPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDY----------D   71 (185)
T ss_dssp             CEEEEEEEEEEECTTSSHHHHHHHHHHSS---CCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSS----------T
T ss_pred             CCCcEEEEEEECCCCCCHHHHHHHHhhCC---CCCcCCCceeeeeeEEEeeCCceEEeecccccccchh----------h
Confidence            45566799999999999999999999873   2333333332211   111  1356889999996331          1


Q ss_pred             HHHHHHHhcccccceEEEEEeCCCCCCcC--cHHHHHHHHhh--CCcEEEEEeccCCCCcHHHHHHH----------HHH
Q 029158           92 ELVKEYVSTRVSLKRVCLLIDTKWGVKPR--DHELISLMERS--QTKYQVVLTKTDTVFPIDVARRA----------MQI  157 (198)
Q Consensus        92 ~~~~~~~~~~~~~d~vi~v~d~~~~~~~~--~~~~~~~~~~~--~~p~iiv~nK~Dl~~~~~~~~~~----------~~~  157 (198)
                      .+...++   ..+|++++|+|.++..+-.  ..++...++..  +.|+++|+||+|+.+........          ++.
T Consensus        72 ~~~~~~~---~~a~~~ilv~d~t~~~Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~r~v~~~~~  148 (185)
T d2atxa1          72 RLRPLSY---PMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQG  148 (185)
T ss_dssp             TTGGGGC---TTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHH
T ss_pred             hhhhhcc---cccceeeeccccchHHHHHHHHHHHHHHHHhcCCCCCeeEeeeccccccchhhhhhhhhcccccccHHHH
Confidence            1111222   3389999999998632211  12233444332  68999999999998754332211          111


Q ss_pred             HHHHHhccCCCCCcEEeccCCCCChHHHHHHHHHhh
Q 029158          158 EESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA  193 (198)
Q Consensus       158 ~~~~~~~~~~~~~v~~~Sa~~~~gi~~l~~~i~~~~  193 (198)
                      ++.....  ...+++++||++|.|++++|+.+.+.+
T Consensus       149 ~~~a~~~--~~~~~~E~SAk~~~gv~e~F~~li~~i  182 (185)
T d2atxa1         149 QKLAKEI--GACCYVECSALTQKGLKTVFDEAIIAI  182 (185)
T ss_dssp             HHHHHHH--TCSCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             HHHHHHc--CCCEEEEecCCCCcCHHHHHHHHHHHH
Confidence            1211111  137899999999999999999887654

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=8e-23  Score=142.05  Aligned_cols=154  Identities=14%  Similarity=0.067  Sum_probs=94.7

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE-EEEe--CCceEEEeCCCCccccchhHHHHHHHHHHHHHH
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN-FFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV   98 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~-~~~~--~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~   98 (198)
                      .+|+++|.+|+|||||++++.+........+..+++.... +...  ...+.+|||||...-          ......++
T Consensus         5 ~Ki~vvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~e~~----------~~~~~~~~   74 (175)
T d2f9la1           5 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERY----------RRITSAYY   74 (175)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGT----------TCCCHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceeeeEEEEECCEEEEEEecccCCcHHH----------HHHHHHHh
Confidence            5899999999999999999998742222222222222222 2222  357899999995221          11112222


Q ss_pred             hcccccceEEEEEeCCCCCCcC-cHHHHHHHHhh---CCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEe
Q 029158           99 STRVSLKRVCLLIDTKWGVKPR-DHELISLMERS---QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMV  174 (198)
Q Consensus        99 ~~~~~~d~vi~v~d~~~~~~~~-~~~~~~~~~~~---~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  174 (198)
                         ..+|++++|+|.++..+.. ..+++..+...   +.|+++|+||+|+.+......  +.......   ....+++++
T Consensus        75 ---~~~~~~i~v~d~~~~~S~~~~~~~~~~i~~~~~~~~piilvgnK~Dl~~~~~~~~--~~~~~~~~---~~~~~~~e~  146 (175)
T d2f9la1          75 ---RGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPT--DEARAFAE---KNNLSFIET  146 (175)
T ss_dssp             ---TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCH--HHHHHHHH---HTTCEEEEC
T ss_pred             ---hccCeEEEEEECCCcccchhHHHHHHHHHHhcCCCCcEEEEEeeecccccccchH--HHHHHhhc---ccCceEEEE
Confidence               2389999999998632211 23344444432   589999999999975422111  11111111   124789999


Q ss_pred             ccCCCCChHHHHHHHHHhh
Q 029158          175 SSKSGAGIRSLRTVLSKIA  193 (198)
Q Consensus       175 Sa~~~~gi~~l~~~i~~~~  193 (198)
                      ||++|+|++++++++.+.+
T Consensus       147 Sa~~g~~i~e~f~~l~~~i  165 (175)
T d2f9la1         147 SALDSTNVEEAFKNILTEI  165 (175)
T ss_dssp             CTTTCTTHHHHHHHHHHHH
T ss_pred             ecCCCcCHHHHHHHHHHHH
Confidence            9999999999999887764

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=5.3e-22  Score=136.96  Aligned_cols=153  Identities=14%  Similarity=0.091  Sum_probs=97.2

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeE-E--EEEEe--CCceEEEeCCCCccccchhHHHHHHHHHHH
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT-I--NFFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVK   95 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~-~--~~~~~--~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~   95 (198)
                      ..+|+++|.+|+|||||+++++++.   ....+.+|... .  .....  ...+.+|||+|.....           ...
T Consensus         2 eiKi~lvG~~~vGKTsli~r~~~~~---f~~~~~pTi~~~~~~~~~~~~~~~~l~i~D~~g~~~~~-----------~~~   67 (168)
T d2atva1           2 EVKLAIFGRAGVGKSALVVRFLTKR---FIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQEDTI-----------QRE   67 (168)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHSC---CCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCCCH-----------HHH
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCC---CCCccCCceeccccccccccccceEEEEeecccccccc-----------cch
Confidence            3689999999999999999999873   22333333221 1  11111  3578999999964321           112


Q ss_pred             HHHhcccccceEEEEEeCCCCCCcCcH-HHHHHHH----hhCCcEEEEEeccCCCCcHH--HHHHHHHHHHHHHhccCCC
Q 029158           96 EYVSTRVSLKRVCLLIDTKWGVKPRDH-ELISLME----RSQTKYQVVLTKTDTVFPID--VARRAMQIEESLKANNSLV  168 (198)
Q Consensus        96 ~~~~~~~~~d~vi~v~d~~~~~~~~~~-~~~~~~~----~~~~p~iiv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~  168 (198)
                      .++..   +|++++|+|.++..+.... .++....    ..+.|+++|+||+|+.....  .++. ..+.+..      +
T Consensus        68 ~~~~~---~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~r~V~~~e~-~~~a~~~------~  137 (168)
T d2atva1          68 GHMRW---GEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEG-EKLATEL------A  137 (168)
T ss_dssp             HHHHH---CSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHH-HHHHHHH------T
T ss_pred             hhhcc---cccceeecccCCccchhhhhhhcccccccccccCcceeeeccchhhhhhccCcHHHH-HHHHHHh------C
Confidence            33333   8999999999863222222 2222221    23689999999999965322  1222 1222211      4


Q ss_pred             CCcEEeccCCCCC-hHHHHHHHHHhhcccc
Q 029158          169 QPVMMVSSKSGAG-IRSLRTVLSKIARFAK  197 (198)
Q Consensus       169 ~~v~~~Sa~~~~g-i~~l~~~i~~~~~~~r  197 (198)
                      ++++++||++|.| ++++|..|.+.+...|
T Consensus       138 ~~~~e~Saktg~gnV~e~F~~l~~~i~~~r  167 (168)
T d2atva1         138 CAFYECSACTGEGNITEIFYELCREVRRRR  167 (168)
T ss_dssp             SEEEECCTTTCTTCHHHHHHHHHHHHHHHH
T ss_pred             CeEEEEccccCCcCHHHHHHHHHHHHHHhc
Confidence            7899999999985 9999999988765543

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=1.5e-22  Score=140.44  Aligned_cols=151  Identities=12%  Similarity=0.033  Sum_probs=94.7

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCcee---EEE-EEE--eCCceEEEeCCCCccccchhHHHHHHHHHHH
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQ---TIN-FFK--LGTKLCLVDLPGYGFAYAKEEVKDAWEELVK   95 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~---~~~-~~~--~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~   95 (198)
                      .||+++|.+|+|||||++++.+.+.   ...+.++..   ... +..  ....+.+|||||....          ..+..
T Consensus         6 ~KI~lvG~~~vGKTsll~~~~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~----------~~~~~   72 (174)
T d2bmea1           6 FKFLVIGNAGTGKSCLLHQFIEKKF---KDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERF----------RSVTR   72 (174)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSSC---CTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGG----------HHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCC---CcccccccccceeeEEEEecCcceeEEEEECCCchhh----------hhhHH
Confidence            5799999999999999999998732   222222221   111 111  1356899999995221          22233


Q ss_pred             HHHhcccccceEEEEEeCCCCCCcCcH-HHHHHHHh---hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCc
Q 029158           96 EYVSTRVSLKRVCLLIDTKWGVKPRDH-ELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPV  171 (198)
Q Consensus        96 ~~~~~~~~~d~vi~v~d~~~~~~~~~~-~~~~~~~~---~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v  171 (198)
                      .+   ...+|++++++|.+........ .++..+..   .+.|+++|+||+|+........  ....+....   ...++
T Consensus        73 ~~---~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~--~~~~~~~~~---~~~~~  144 (174)
T d2bmea1          73 SY---YRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTF--LEASRFAQE---NELMF  144 (174)
T ss_dssp             TT---STTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCH--HHHHHHHHH---TTCEE
T ss_pred             HH---hhhCCEEEEEEecccchhHHHHhhhhcccccccCCceEEEEEEecccccchhchhh--hHHHHHHHh---CCCEE
Confidence            33   3448999999999863222222 23333322   2689999999999865332211  111111111   14789


Q ss_pred             EEeccCCCCChHHHHHHHHHhh
Q 029158          172 MMVSSKSGAGIRSLRTVLSKIA  193 (198)
Q Consensus       172 ~~~Sa~~~~gi~~l~~~i~~~~  193 (198)
                      +++||++|+|++++++++.+.+
T Consensus       145 ~e~Sak~~~gi~e~f~~l~~~i  166 (174)
T d2bmea1         145 LETSALTGENVEEAFVQCARKI  166 (174)
T ss_dssp             EECCTTTCTTHHHHHHHHHHHH
T ss_pred             EEeeCCCCcCHHHHHHHHHHHH
Confidence            9999999999999999987764

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.88  E-value=7.6e-23  Score=143.25  Aligned_cols=154  Identities=14%  Similarity=0.031  Sum_probs=95.5

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEE-e--CCceEEEeCCCCccccchhHHHHHHHHHHHHHH
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK-L--GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV   98 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~-~--~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~   98 (198)
                      .+|+++|.+|+|||||++++++.+......+..+.+....... .  ...+.++||+|..+...             ...
T Consensus         3 ~Kv~vvG~~~vGKSSLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~-------------~~~   69 (184)
T d1vg8a_           3 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQS-------------LGV   69 (184)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSC-------------SCC
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCCCcCCccceeeeeeeeeeCCceEEEEeeecCCcccccc-------------ccc
Confidence            5899999999999999999998742222122222222111111 1  34678999999643211             111


Q ss_pred             hcccccceEEEEEeCCCCCCcCc-HHHHHHHHh-------hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCC
Q 029158           99 STRVSLKRVCLLIDTKWGVKPRD-HELISLMER-------SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQP  170 (198)
Q Consensus        99 ~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~-------~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (198)
                      .....+|++++++|.++...... .+++..+..       .+.|+++|+||+|+.......+..   ++....  ....+
T Consensus        70 ~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ip~ilv~nK~Dl~~~~~~~~~~---~~~~~~--~~~~~  144 (184)
T d1vg8a_          70 AFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRA---QAWCYS--KNNIP  144 (184)
T ss_dssp             GGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHH---HHHHHH--TTSCC
T ss_pred             ccccCccEEEEeecccchhhhhcchhhHHHHHHHhccccccCCCEEEEEEeecccccchhHHHH---HHHHHH--hcCCe
Confidence            22334899999999976222111 234433332       257999999999987643222211   222221  22589


Q ss_pred             cEEeccCCCCChHHHHHHHHHhh
Q 029158          171 VMMVSSKSGAGIRSLRTVLSKIA  193 (198)
Q Consensus       171 v~~~Sa~~~~gi~~l~~~i~~~~  193 (198)
                      ++++||++|.|++++++++.+.+
T Consensus       145 ~~e~Sak~~~gI~e~f~~l~~~i  167 (184)
T d1vg8a_         145 YFETSAKEAINVEQAFQTIARNA  167 (184)
T ss_dssp             EEECBTTTTBSHHHHHHHHHHHH
T ss_pred             EEEEcCCCCcCHHHHHHHHHHHH
Confidence            99999999999999999987654

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=99.88  E-value=4.7e-22  Score=138.13  Aligned_cols=159  Identities=14%  Similarity=0.112  Sum_probs=102.7

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHHHH
Q 029158           19 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV   98 (198)
Q Consensus        19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~   98 (198)
                      +...+|+++|.+|+|||||+++|.+.+ ..........+ .......+..+.++|++|.....          .....++
T Consensus        13 ~k~~kI~vvG~~~~GKSsLi~rl~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~d~~~~~~~~----------~~~~~~~   80 (177)
T d1zj6a1          13 HQEHKVIIVGLDNAGKTTILYQFSMNE-VVHTSPTIGSN-VEEIVINNTRFLMWDIGGQESLR----------SSWNTYY   80 (177)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTTS-CEEEECCSCSS-CEEEEETTEEEEEEECCC----C----------GGGHHHH
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHhcCC-CCcccccccee-EEEEeecceEEEEeccccccccc----------cchhhhh
Confidence            345789999999999999999999984 34333333222 23333456789999999864321          1112222


Q ss_pred             hcccccceEEEEEeCCCCCCcCcHH-HHHHHH----hhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEE
Q 029158           99 STRVSLKRVCLLIDTKWGVKPRDHE-LISLME----RSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMM  173 (198)
Q Consensus        99 ~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~----~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  173 (198)
                      .   .++.+++++|.++........ ......    ..+.|+++|+||+|+.......+..+.....  .......++++
T Consensus        81 ~---~~~~~i~v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~i~~~~~~~--~~~~~~~~~~~  155 (177)
T d1zj6a1          81 T---NTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLT--SIKDHQWHIQA  155 (177)
T ss_dssp             T---TCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGG--GCCSSCEEEEE
T ss_pred             c---cceeeeeecccccccchhhhhhhhhhhhhcccccceEEEEEEEcccccccCcHHHHHHHHHHH--hhHhcCCEEEE
Confidence            2   378899999987633222211 111111    2368999999999998766544433333211  22334578999


Q ss_pred             eccCCCCChHHHHHHHHHhhc
Q 029158          174 VSSKSGAGIRSLRTVLSKIAR  194 (198)
Q Consensus       174 ~Sa~~~~gi~~l~~~i~~~~~  194 (198)
                      +||++|+|++++++||.+.++
T Consensus       156 ~Sa~tg~Gi~e~~~~L~~~lk  176 (177)
T d1zj6a1         156 CCALTGEGLCQGLEWMMSRLK  176 (177)
T ss_dssp             CBTTTTBTHHHHHHHHHHHHC
T ss_pred             EeCCCCCCHHHHHHHHHHHhC
Confidence            999999999999999998875

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.88  E-value=3.5e-22  Score=137.69  Aligned_cols=153  Identities=13%  Similarity=0.084  Sum_probs=97.1

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEE---EEEEe---CCceEEEeCCCCccccchhHHHHHHHHHH
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---NFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELV   94 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~---~~~~~---~~~~~iiDtpG~~~~~~~~~~~~~~~~~~   94 (198)
                      ..+|+++|.+|+|||||+++|.+..   ....+.++....   .....   ...+.+|||+|....          ..+.
T Consensus         4 ~~Ki~lvG~~~vGKTsli~rl~~~~---f~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~----------~~~~   70 (167)
T d1z0ja1           4 ELKVCLLGDTGVGKSSIMWRFVEDS---FDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERF----------RALA   70 (167)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSC---CCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGG----------GGGT
T ss_pred             eeEEEEECCCCcCHHHHHHHHHhCC---CCcccccccccccccccccccccccceeeeecCCchhh----------hHHH
Confidence            3579999999999999999999874   233333333221   11112   245679999996432          2223


Q ss_pred             HHHHhcccccceEEEEEeCCCCCCcCcH-HHHHHHHh---hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCC
Q 029158           95 KEYVSTRVSLKRVCLLIDTKWGVKPRDH-ELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQP  170 (198)
Q Consensus        95 ~~~~~~~~~~d~vi~v~d~~~~~~~~~~-~~~~~~~~---~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (198)
                      ..++..   +|++++++|.......... .++..+..   ...|+++|+||+|+........  +..++....   .+++
T Consensus        71 ~~~~~~---~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~--~~~~~~~~~---~~~~  142 (167)
T d1z0ja1          71 PMYYRG---SAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVME--RDAKDYADS---IHAI  142 (167)
T ss_dssp             HHHHTT---CSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCH--HHHHHHHHH---TTCE
T ss_pred             HHHHhh---ccceEEEeeechhhhhhhHHHhhhhhhhccCCcceEEEecccchhccccchhH--HHHHHHHHH---cCCE
Confidence            334433   8999999998752222221 22322322   3689999999999965422111  122222221   2478


Q ss_pred             cEEeccCCCCChHHHHHHHHHhhc
Q 029158          171 VMMVSSKSGAGIRSLRTVLSKIAR  194 (198)
Q Consensus       171 v~~~Sa~~~~gi~~l~~~i~~~~~  194 (198)
                      ++++||++|.|+++++.+|.+.++
T Consensus       143 ~~e~SAk~~~nV~e~f~~l~~~i~  166 (167)
T d1z0ja1         143 FVETSAKNAININELFIEISRRIP  166 (167)
T ss_dssp             EEECBTTTTBSHHHHHHHHHHHCC
T ss_pred             EEEEecCCCCCHHHHHHHHHHhCC
Confidence            999999999999999999988764

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=6.9e-22  Score=137.12  Aligned_cols=154  Identities=12%  Similarity=-0.003  Sum_probs=95.3

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEE-e--CCceEEEeCCCCccccchhHHHHHHHHHHHHH
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK-L--GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY   97 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~-~--~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~   97 (198)
                      ..+|+++|.+|+|||||++++.++..........+.+....... .  ...+.+||++|....             ....
T Consensus         6 ~~KI~vvG~~~vGKSSli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~-------------~~~~   72 (174)
T d1wmsa_           6 LFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERF-------------RSLR   72 (174)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGG-------------HHHH
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhCCCCCccccceeeeeeeeeeeecCceeeEeeecccCccee-------------hhhh
Confidence            45899999999999999999998742222222222222221112 1  356789999996331             1122


Q ss_pred             HhcccccceEEEEEeCCCCCCcCc-HHHHHHHHh-------hCCcEEEEEeccCCCCcH-HHHHHHHHHHHHHHhccCCC
Q 029158           98 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER-------SQTKYQVVLTKTDTVFPI-DVARRAMQIEESLKANNSLV  168 (198)
Q Consensus        98 ~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~-------~~~p~iiv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~  168 (198)
                      ......+|++++++|.++..+... ..+++.+..       .+.|+++|+||+|+.... ..+    ..++.....  ..
T Consensus        73 ~~~~~~~~~~i~~~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilVgnK~Dl~~~~v~~~----~~~~~~~~~--~~  146 (174)
T d1wmsa_          73 TPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTE----EAQAWCRDN--GD  146 (174)
T ss_dssp             GGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHH----HHHHHHHHT--TC
T ss_pred             hhhhhccceEEEEEeeecccccchhhhHHHHHHHHhccccCCCceEEEeccccchhhccCcHH----HHHHHHHHc--CC
Confidence            233345899999999986322222 233433332       258999999999996532 111    222222222  14


Q ss_pred             CCcEEeccCCCCChHHHHHHHHHhh
Q 029158          169 QPVMMVSSKSGAGIRSLRTVLSKIA  193 (198)
Q Consensus       169 ~~v~~~Sa~~~~gi~~l~~~i~~~~  193 (198)
                      .+++++||++|+|+++++++|.+.+
T Consensus       147 ~~~~e~Sak~~~gI~e~f~~l~~~i  171 (174)
T d1wmsa_         147 YPYFETSAKDATNVAAAFEEAVRRV  171 (174)
T ss_dssp             CCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             CeEEEEcCCCCcCHHHHHHHHHHHH
Confidence            7899999999999999999887654

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=1.1e-21  Score=137.40  Aligned_cols=153  Identities=16%  Similarity=0.147  Sum_probs=94.7

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCcee-EEEEEE------------eCCceEEEeCCCCccccchhHHHH
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQ-TINFFK------------LGTKLCLVDLPGYGFAYAKEEVKD   88 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~-~~~~~~------------~~~~~~iiDtpG~~~~~~~~~~~~   88 (198)
                      .+|+++|.+|+|||||+++|++........+....+. ...+..            ....+.+|||+|.          +
T Consensus         6 ~Ki~ivG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~dt~G~----------e   75 (186)
T d2f7sa1           6 IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQ----------E   75 (186)
T ss_dssp             EEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESH----------H
T ss_pred             EEEEEECCCCcCHHHHHHHHhcCCCCCccCCcccceeeEEEEEEecccccccccccceEEeccccCCcc----------h
Confidence            5799999999999999999998742111111110000 001110            1246899999994          3


Q ss_pred             HHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHh-------hCCcEEEEEeccCCCCcHHHHHHHHHHHHHH
Q 029158           89 AWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMER-------SQTKYQVVLTKTDTVFPIDVARRAMQIEESL  161 (198)
Q Consensus        89 ~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~-------~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~  161 (198)
                      .+..+...++..   +|++++|+|.++.  .....+..+...       ...|+++|+||+|+........  +..++..
T Consensus        76 ~~~~~~~~~~~~---~~~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~v~~--~e~~~~~  148 (186)
T d2f7sa1          76 RFRSLTTAFFRD---AMGFLLMFDLTSQ--QSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNE--RQARELA  148 (186)
T ss_dssp             HHHHHHHHHHTT---CCEEEEEEETTCH--HHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCH--HHHHHHH
T ss_pred             hhHHHHHHHHhc---CCEEEEEEecccc--ccceeeeeccchhhhhccCCCceEEEEeeeccchhhhcchH--HHHHHHH
Confidence            334445555544   8999999999752  112222222221       2468999999999975432211  1122222


Q ss_pred             HhccCCCCCcEEeccCCCCChHHHHHHHHHhhc
Q 029158          162 KANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR  194 (198)
Q Consensus       162 ~~~~~~~~~v~~~Sa~~~~gi~~l~~~i~~~~~  194 (198)
                      ..   .+++++++||++|+|+++++++|.+.+.
T Consensus       149 ~~---~~~~~~e~Sak~~~~i~e~f~~l~~~i~  178 (186)
T d2f7sa1         149 DK---YGIPYFETSAATGQNVEKAVETLLDLIM  178 (186)
T ss_dssp             HH---TTCCEEEEBTTTTBTHHHHHHHHHHHHH
T ss_pred             HH---cCCEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            22   1478999999999999999999988653

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=3.3e-22  Score=138.25  Aligned_cols=155  Identities=14%  Similarity=0.073  Sum_probs=97.0

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE-EEE--eCCceEEEeCCCCccccchhHHHHHHHHHHHHHH
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN-FFK--LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV   98 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~-~~~--~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~   98 (198)
                      .+|+++|.+|+|||||+++|++.+......+..+.+.... ...  ....+.+|||+|....          ..+...++
T Consensus         7 ~Ki~vvG~~~vGKTsLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~----------~~~~~~~~   76 (170)
T d1r2qa_           7 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERY----------HSLAPMYY   76 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGG----------GGGHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccceeeccceEEEEEeccCCCchhh----------hhhHHHHh
Confidence            4899999999999999999998742222222222221111 111  1357899999996331          22333444


Q ss_pred             hcccccceEEEEEeCCCCCCcCc-HHHHHHHHh---hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEe
Q 029158           99 STRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMV  174 (198)
Q Consensus        99 ~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~---~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  174 (198)
                      ..   +|++++++|..+...... ..++..+..   .+.|+++|+||+|+........  +..++....   ..++++++
T Consensus        77 ~~---~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~--e~~~~~~~~---~~~~~~e~  148 (170)
T d1r2qa_          77 RG---AQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDF--QEAQSYADD---NSLLFMET  148 (170)
T ss_dssp             TT---CSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCH--HHHHHHHHH---TTCEEEEC
T ss_pred             hC---cceEEEEeccchhhHHHHHHHHhhhhhhccCCCceEEeecccccccccccccH--HHHHHHHHh---cCCEEEEe
Confidence            43   899999999876322221 223333332   2689999999999865432111  112222221   24789999


Q ss_pred             ccCCCCChHHHHHHHHHhhc
Q 029158          175 SSKSGAGIRSLRTVLSKIAR  194 (198)
Q Consensus       175 Sa~~~~gi~~l~~~i~~~~~  194 (198)
                      ||++|+|++++++.|.+.+.
T Consensus       149 SAk~g~~V~e~f~~l~~~i~  168 (170)
T d1r2qa_         149 SAKTSMNVNEIFMAIAKKLP  168 (170)
T ss_dssp             CTTTCTTHHHHHHHHHHTSC
T ss_pred             eCCCCCCHHHHHHHHHHHHh
Confidence            99999999999999987654

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=2.9e-22  Score=138.91  Aligned_cols=153  Identities=16%  Similarity=0.082  Sum_probs=93.8

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEE---eCCceEEEeCCCCccccchhHHHHHHHHHHHHHH
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV   98 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~   98 (198)
                      .+|+++|.+|+|||||++++++.+......+...++.......   ....+.+||++|....          ..+...++
T Consensus         4 ~KivvvG~~~vGKTsli~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~----------~~~~~~~~   73 (173)
T d2a5ja1           4 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESF----------RSITRSYY   73 (173)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGT----------SCCCHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHhcCCCCCCcccceeeccceeeeeeeeeEEEEEeecccCccch----------hhHHHHHh
Confidence            4799999999999999999998742222222221222111111   1357899999996432          11222333


Q ss_pred             hcccccceEEEEEeCCCCCCcCc-HHHHHHHHh---hCCcEEEEEeccCCCCcHHH-HHHHHHHHHHHHhccCCCCCcEE
Q 029158           99 STRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDV-ARRAMQIEESLKANNSLVQPVMM  173 (198)
Q Consensus        99 ~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~---~~~p~iiv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~  173 (198)
                      ..   +|++++|+|..+..+... ..++..+..   .+.|+++|+||+|+...... .+....+.+..      ..++++
T Consensus        74 ~~---~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~a~~~------~~~~~e  144 (173)
T d2a5ja1          74 RG---AAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREH------GLIFME  144 (173)
T ss_dssp             TT---CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHH------TCEEEE
T ss_pred             hc---cCEEEEEEeecChHHHHhHHHHHHHHHHhCCCCCeEEEEecCCchhhhhhhHHHHHHHHHHHc------CCEEEE
Confidence            33   899999999876322222 233443433   36899999999998643211 11112222211      478999


Q ss_pred             eccCCCCChHHHHHHHHHhh
Q 029158          174 VSSKSGAGIRSLRTVLSKIA  193 (198)
Q Consensus       174 ~Sa~~~~gi~~l~~~i~~~~  193 (198)
                      +||++|.|+++++..|.+.+
T Consensus       145 ~Sa~tg~~V~e~f~~i~~~i  164 (173)
T d2a5ja1         145 TSAKTACNVEEAFINTAKEI  164 (173)
T ss_dssp             ECTTTCTTHHHHHHHHHHHH
T ss_pred             ecCCCCCCHHHHHHHHHHHH
Confidence            99999999999999887753

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=3.2e-22  Score=139.17  Aligned_cols=153  Identities=18%  Similarity=0.106  Sum_probs=95.6

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEE---eCCceEEEeCCCCccccchhHHHHHHHHHHHHHH
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV   98 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~   98 (198)
                      .||+++|.+|+|||||+++|.++.......+....+.......   ....+.+|||||....          ..+...++
T Consensus         8 iKi~vvG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----------~~~~~~~~   77 (177)
T d1x3sa1           8 LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERF----------RTLTPSYY   77 (177)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGG----------CCSHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHhCCCCCccccceeecceeEEEEEeccccEEEEEECCCchhh----------HHHHHHHH
Confidence            5799999999999999999998742222222221211111112   2457899999996332          11222333


Q ss_pred             hcccccceEEEEEeCCCCCCcCc-HHHHHHHHh----hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEE
Q 029158           99 STRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMM  173 (198)
Q Consensus        99 ~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~----~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  173 (198)
                      .   .+|++++|+|.++...... ..++..+..    ...|++++.||.|.....-...   ..++....   .+.++++
T Consensus        78 ~---~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~i~~~~nk~d~~~~~v~~~---~~~~~~~~---~~~~~~e  148 (177)
T d1x3sa1          78 R---GAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRN---EGLKFARK---HSMLFIE  148 (177)
T ss_dssp             T---TCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHH---HHHHHHHH---TTCEEEE
T ss_pred             h---cCCEEEEEEECCCccccccchhhhhhhcccccccceeeEEEeeccccccccccHH---HHHHHHHH---CCCEEEE
Confidence            3   3899999999876222222 234444432    2578999999999875431111   11222211   2478999


Q ss_pred             eccCCCCChHHHHHHHHHhh
Q 029158          174 VSSKSGAGIRSLRTVLSKIA  193 (198)
Q Consensus       174 ~Sa~~~~gi~~l~~~i~~~~  193 (198)
                      +||++|+|++++++++.+.+
T Consensus       149 ~Sa~tg~gv~e~f~~l~~~l  168 (177)
T d1x3sa1         149 ASAKTCDGVQCAFEELVEKI  168 (177)
T ss_dssp             CCTTTCTTHHHHHHHHHHHH
T ss_pred             EeCCCCCCHHHHHHHHHHHH
Confidence            99999999999999887754

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.87  E-value=7.8e-22  Score=136.23  Aligned_cols=150  Identities=14%  Similarity=0.103  Sum_probs=96.8

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEE---E--EEEeCCceEEEeCCCCccccchhHHHHHHHHHHH
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---N--FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVK   95 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~---~--~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~   95 (198)
                      ..+|+++|.+|+|||||+++++++..   ...+.++..+.   .  .......+.+||++|.....          .+..
T Consensus         4 t~Ki~lvG~~~vGKTsll~~~~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~----------~~~~   70 (169)
T d1x1ra1           4 TYKLVVVGDGGVGKSALTIQFFQKIF---VPDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFS----------AMRE   70 (169)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSSC---CTTCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGC----------SSHH
T ss_pred             cEEEEEECCCCcCHHHHHHHHHhCCC---CcccCcceeeccccccccccccccccccccccccccc----------cchh
Confidence            36899999999999999999998732   22233222221   1  11124578899999964321          1122


Q ss_pred             HHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHH----hhCCcEEEEEeccCCCCcHHH--HHHHHHHHHHHHhccCCC
Q 029158           96 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLME----RSQTKYQVVLTKTDTVFPIDV--ARRAMQIEESLKANNSLV  168 (198)
Q Consensus        96 ~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~----~~~~p~iiv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~  168 (198)
                      .+++.   +|++++|+|.++..+-.. ..++..+.    ..+.|+++|+||+|+......  ++..+ +.+..      +
T Consensus        71 ~~~~~---~~~~llv~d~~d~~Sf~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~v~~e~~~~-~~~~~------~  140 (169)
T d1x1ra1          71 QYMRT---GDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKE-MATKY------N  140 (169)
T ss_dssp             HHHHH---CSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHH-HHHHH------T
T ss_pred             hhhhh---ccEEEEecccccchhhhccchhhHHHHhhccccCccEEEEecccchhhhceeehhhHHH-HHHHc------C
Confidence            33333   899999999986322222 23444333    236899999999999765422  22222 22211      4


Q ss_pred             CCcEEeccCCCC-ChHHHHHHHHHhh
Q 029158          169 QPVMMVSSKSGA-GIRSLRTVLSKIA  193 (198)
Q Consensus       169 ~~v~~~Sa~~~~-gi~~l~~~i~~~~  193 (198)
                      ++++++||+++. |++++|+.|.+.+
T Consensus       141 ~~~~e~Sak~~~~nV~~~F~~l~~~i  166 (169)
T d1x1ra1         141 IPYIETSAKDPPLNVDKTFHDLVRVI  166 (169)
T ss_dssp             CCEEEEBCSSSCBSHHHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCcCHHHHHHHHHHHH
Confidence            789999999986 9999999988765

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=3.7e-22  Score=137.61  Aligned_cols=153  Identities=14%  Similarity=0.042  Sum_probs=97.6

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE---EEE--eCCceEEEeCCCCccccchhHHHHHHHHHHH
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFK--LGTKLCLVDLPGYGFAYAKEEVKDAWEELVK   95 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~---~~~--~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~   95 (198)
                      ..+|+++|.+|+|||||+++++....   ...+.++.....   +..  ....+.+||++|....          ..+..
T Consensus         3 ~~KivvvG~~~vGKTsli~r~~~~~f---~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~----------~~~~~   69 (167)
T d1c1ya_           3 EYKLVVLGSGGVGKSALTVQFVQGIF---VEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQF----------TAMRD   69 (167)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCC---CCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSS----------TTHHH
T ss_pred             eeEEEEECCCCCCHHHHHHHHHcCCC---CCccCCccccccceeEEeeeeEEEeccccccCcccc----------ccccc
Confidence            35799999999999999999998742   233333322211   111  1356899999997543          12222


Q ss_pred             HHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHh----hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCC
Q 029158           96 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQP  170 (198)
Q Consensus        96 ~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~----~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (198)
                      .++..   +|++++++|.++..+-.. ..++..+.+    .+.|+++|+||+|+........  +.........  ...+
T Consensus        70 ~~~~~---~~~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~~~~--~~~~~~~~~~--~~~~  142 (167)
T d1c1ya_          70 LYMKN---GQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGK--EQGQNLARQW--CNCA  142 (167)
T ss_dssp             HHHHH---CSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCH--HHHHHHHHHT--TSCE
T ss_pred             ccccc---cceeEEeeeccchhhhHhHHHHHHHHHHhcCCCCCeEEEEEEecCcccccccch--hHHHHHHHHh--CCCE
Confidence            33333   899999999987322222 234443332    2589999999999975432111  1111111111  2478


Q ss_pred             cEEeccCCCCChHHHHHHHHHhh
Q 029158          171 VMMVSSKSGAGIRSLRTVLSKIA  193 (198)
Q Consensus       171 v~~~Sa~~~~gi~~l~~~i~~~~  193 (198)
                      ++++||++|+|++++|++|.+.+
T Consensus       143 ~~e~Sak~g~gv~e~F~~l~~~i  165 (167)
T d1c1ya_         143 FLESSAKSKINVNEIFYDLVRQI  165 (167)
T ss_dssp             EEECBTTTTBSHHHHHHHHHHHH
T ss_pred             EEEEcCCCCcCHHHHHHHHHHHh
Confidence            99999999999999999998765

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=7.4e-22  Score=136.05  Aligned_cols=151  Identities=15%  Similarity=0.061  Sum_probs=93.3

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCcee---EEEEEEe---CCceEEEeCCCCccccchhHHHHHHHHHHH
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQ---TINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVK   95 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~---~~~~~~~---~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~   95 (198)
                      .||+++|.+|+|||||+++++++..   ...+.++..   .......   ...+.+|||+|....          ..+..
T Consensus         4 fKivlvG~~~vGKTsLi~r~~~~~f---~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~----------~~~~~   70 (167)
T d1z08a1           4 FKVVLLGEGCVGKTSLVLRYCENKF---NDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERF----------HALGP   70 (167)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHCCC---CSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-----------------C
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCC---CcccccccccchheeeeccCCccceeeeeccCCccee----------cccch
Confidence            4899999999999999999998732   223332222   1111111   357889999996321          11122


Q ss_pred             HHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHH---hhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCc
Q 029158           96 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLME---RSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPV  171 (198)
Q Consensus        96 ~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~---~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v  171 (198)
                      .   ....+|++++|+|.++..+-.. ..+++.+.   ....|+++|+||+|+........  ++.++....   .+.++
T Consensus        71 ~---~~~~~~~~i~v~d~~~~~Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~--~e~~~~a~~---~~~~~  142 (167)
T d1z08a1          71 I---YYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSI--QEAESYAES---VGAKH  142 (167)
T ss_dssp             C---SSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCH--HHHHHHHHH---TTCEE
T ss_pred             h---hccCCceeEEEEeCCchhHHHhhhhhhhhcccccccccceeeeccccccccccccch--HHHHHHHHH---cCCeE
Confidence            2   2344899999999986322112 22333332   23678999999999876432110  112222221   14789


Q ss_pred             EEeccCCCCChHHHHHHHHHhh
Q 029158          172 MMVSSKSGAGIRSLRTVLSKIA  193 (198)
Q Consensus       172 ~~~Sa~~~~gi~~l~~~i~~~~  193 (198)
                      +++||++|.|+++++++|.+.+
T Consensus       143 ~e~Sak~~~~v~e~F~~l~~~i  164 (167)
T d1z08a1         143 YHTSAKQNKGIEELFLDLCKRM  164 (167)
T ss_dssp             EEEBTTTTBSHHHHHHHHHHHH
T ss_pred             EEEecCCCcCHHHHHHHHHHHH
Confidence            9999999999999999988754

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=2.8e-22  Score=140.26  Aligned_cols=156  Identities=14%  Similarity=-0.003  Sum_probs=97.2

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEE---EEEE--eCCceEEEeCCCCccccchhHHHHHHHHHH
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---NFFK--LGTKLCLVDLPGYGFAYAKEEVKDAWEELV   94 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~---~~~~--~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~   94 (198)
                      ...+|+++|.+|+|||||+++|++...   ...+.+|..+.   .+..  ....+.+||++|....          ..+.
T Consensus         4 ~~iKivviG~~~vGKTsli~~~~~~~f---~~~~~~ti~~~~~~~~~~~~~~~~~~~~d~~g~~~~----------~~~~   70 (183)
T d1mh1a_           4 QAIKCVVVGDGAVGKTCLLISYTTNAF---PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDY----------DRLR   70 (183)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSSC---CSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGG----------TTTG
T ss_pred             eeEEEEEECCCCCCHHHHHHHHHhCCC---CcccccceeeceeeeeeccCcceEEEeecccccccc----------hhhh
Confidence            456899999999999999999998742   23333333222   1212  2356789999995321          1111


Q ss_pred             HHHHhcccccceEEEEEeCCCCCCcCc--HHHHHHHHhh--CCcEEEEEeccCCCCcHHHHHHH----------HHHHHH
Q 029158           95 KEYVSTRVSLKRVCLLIDTKWGVKPRD--HELISLMERS--QTKYQVVLTKTDTVFPIDVARRA----------MQIEES  160 (198)
Q Consensus        95 ~~~~~~~~~~d~vi~v~d~~~~~~~~~--~~~~~~~~~~--~~p~iiv~nK~Dl~~~~~~~~~~----------~~~~~~  160 (198)
                      ..+   ...+|++++|+|.++..+-..  .++...++..  +.|+++|+||+|+..........          ......
T Consensus        71 ~~~---~~~~~~~ilv~d~~~~~sf~~i~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (183)
T d1mh1a_          71 PLS---YPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAM  147 (183)
T ss_dssp             GGG---CTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHH
T ss_pred             hhc---ccccceeeeeeccchHHHHHHHHHHHHHHHHHhCCCCcEEEEeecccchhhhhhhhhhhhccccchhhHHHHHH
Confidence            122   234899999999986322111  1233333332  58999999999987654322110          111111


Q ss_pred             HHhccCCCCCcEEeccCCCCChHHHHHHHHHhh
Q 029158          161 LKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA  193 (198)
Q Consensus       161 ~~~~~~~~~~v~~~Sa~~~~gi~~l~~~i~~~~  193 (198)
                      ....  ...+++++||++|.|++++|+.+.+.+
T Consensus       148 a~~~--~~~~~~E~SAk~~~~V~e~F~~l~~~i  178 (183)
T d1mh1a_         148 AKEI--GAVKYLECSALTQRGLKTVFDEAIRAV  178 (183)
T ss_dssp             HHHT--TCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             HHHc--CCceEEEcCCCCCcCHHHHHHHHHHHH
Confidence            1111  137899999999999999999888653

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.87  E-value=1.1e-21  Score=152.18  Aligned_cols=167  Identities=17%  Similarity=0.196  Sum_probs=112.8

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCcc---ceeecCCCCceeEEEEEEe--CCceEEEeCCCCccccchhHHHHHHHHHH
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQWG---VVRTSDKPGLTQTINFFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELV   94 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~~~---~~~~~~~~~~t~~~~~~~~--~~~~~iiDtpG~~~~~~~~~~~~~~~~~~   94 (198)
                      ...+|+++|.+|+|||||+|+|++...   .....+..+||++...+..  ..++.+|||||++......      +.+.
T Consensus        55 ~~l~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~~~g~~~tT~~~~~~~~~~~~~~~l~DtPG~~~~~~~~------~~~~  128 (400)
T d1tq4a_          55 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPP------DTYL  128 (400)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCCH------HHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCcCCCccCCCCCCCCceeeeeeeccCCCeEEEEeCCCcccccccH------HHHH
Confidence            357899999999999999999998521   1222333446665544333  5679999999987653222      1111


Q ss_pred             HHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCc-------------HHHHHHHHHHHHHH
Q 029158           95 KEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFP-------------IDVARRAMQIEESL  161 (198)
Q Consensus        95 ~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~-------------~~~~~~~~~~~~~~  161 (198)
                      .+  .....+|+++++.|.  .+...+.++++.+...++|+++|+||+|....             ..++...+.+.+.+
T Consensus       129 ~~--~~~~~~d~~l~~~~~--~~~~~d~~l~~~l~~~~k~~~~V~nK~D~~~~~~~~~~~~~~~~e~~l~~ir~~~~~~l  204 (400)
T d1tq4a_         129 EK--MKFYEYDFFIIISAT--RFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTF  204 (400)
T ss_dssp             HH--TTGGGCSEEEEEESS--CCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHH
T ss_pred             HH--hhhhcceEEEEecCC--CCCHHHHHHHHHHHHcCCCEEEEEeCcccccchhhhcccccccHHHHHHHHHHHHHHHH
Confidence            11  122346777776664  47888888999999989999999999996422             12334455556666


Q ss_pred             HhccCCCCCcEEeccCC--CCChHHHHHHHHHhhccc
Q 029158          162 KANNSLVQPVMMVSSKS--GAGIRSLRTVLSKIARFA  196 (198)
Q Consensus       162 ~~~~~~~~~v~~~Sa~~--~~gi~~l~~~i~~~~~~~  196 (198)
                      ........++|.+|+.+  ..|+++|.+.+.+.++..
T Consensus       205 ~~~~~~~~~vflvS~~~~~~~d~~~L~~~l~~~L~~~  241 (400)
T d1tq4a_         205 RENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIY  241 (400)
T ss_dssp             HHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGG
T ss_pred             HHcCCCCCCEEEecCCcccccCHHHHHHHHHHHhHHH
Confidence            65555567899999865  469999999999887654

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=1.3e-21  Score=135.14  Aligned_cols=152  Identities=16%  Similarity=0.140  Sum_probs=93.4

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCc-eeE---EEEEEe--CCceEEEeCCCCccccchhHHHHHHHHHH
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGL-TQT---INFFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELV   94 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~-t~~---~~~~~~--~~~~~iiDtpG~~~~~~~~~~~~~~~~~~   94 (198)
                      ..+|+++|.+|+|||||++++++++..  ....+.+ ..+   ..+...  ...+.+|||||...          +..+.
T Consensus         6 ~fKi~vvG~~~vGKTsli~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~----------~~~~~   73 (170)
T d2g6ba1           6 AFKVMLVGDSGVGKTCLLVRFKDGAFL--AGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQER----------FRSVT   73 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCC--CCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC-----------------
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCC--cccccceeeeeeEEEEEEecCcEEEEEEEECCCchh----------hHHHH
Confidence            357999999999999999999887321  1111211 112   122222  34788999999522          12222


Q ss_pred             HHHHhcccccceEEEEEeCCCCCCcCcH-HHHHHH-H--hhCCcEEEEEeccCCCCcHHH--HHHHHHHHHHHHhccCCC
Q 029158           95 KEYVSTRVSLKRVCLLIDTKWGVKPRDH-ELISLM-E--RSQTKYQVVLTKTDTVFPIDV--ARRAMQIEESLKANNSLV  168 (198)
Q Consensus        95 ~~~~~~~~~~d~vi~v~d~~~~~~~~~~-~~~~~~-~--~~~~p~iiv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~  168 (198)
                      ..+   ...+|++++++|..+..+.... .++... .  ....|+++|.||+|+......  ++... +.+..      +
T Consensus        74 ~~~---~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~~k~d~~~~~~v~~~~~~~-~~~~~------~  143 (170)
T d2g6ba1          74 HAY---YRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEK-LAKEY------G  143 (170)
T ss_dssp             -CC---GGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHH-HHHHH------T
T ss_pred             HHh---hcCCceeEEEecCCcccchhhhhhhhhhhhhccCCCceEEEEEeeechhhcccccHHHHHH-HHHHc------C
Confidence            222   2348999999999763222221 222222 2  235899999999999865322  12112 21111      4


Q ss_pred             CCcEEeccCCCCChHHHHHHHHHhhc
Q 029158          169 QPVMMVSSKSGAGIRSLRTVLSKIAR  194 (198)
Q Consensus       169 ~~v~~~Sa~~~~gi~~l~~~i~~~~~  194 (198)
                      ++++++||++|.|+++++++|.+.++
T Consensus       144 ~~~~e~Sak~g~gi~e~f~~l~~~i~  169 (170)
T d2g6ba1         144 LPFMETSAKTGLNVDLAFTAIAKELK  169 (170)
T ss_dssp             CCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             CEEEEEeCCCCcCHHHHHHHHHHHcC
Confidence            79999999999999999999987754

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.87  E-value=2.3e-22  Score=141.91  Aligned_cols=156  Identities=16%  Similarity=0.097  Sum_probs=97.0

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEE-EE--EEeCCceEEEeCCCCccccchhHHHHHHHHHHHHH
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI-NF--FKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY   97 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~-~~--~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~   97 (198)
                      ..+|+++|.+|+|||||+++|++........+..+++... .+  ......+.+|||||...-          ..+...+
T Consensus         6 ~~KivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~e~~----------~~~~~~~   75 (194)
T d2bcgy1           6 LFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERF----------RTITSSY   75 (194)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTT----------TCCCGGG
T ss_pred             EEEEEEECCCCcCHHHHHHHHhhCCCCCCcCCccceeEEEEEEEEeeEEEEEEEEECCCchhh----------HHHHHHH
Confidence            3689999999999999999999773222222222222222 12  123467899999995321          1112223


Q ss_pred             HhcccccceEEEEEeCCCCCCcCc-HHHHHHHHh---hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEE
Q 029158           98 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMM  173 (198)
Q Consensus        98 ~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~---~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  173 (198)
                      +   ..++++++|+|.+....... ..++..+..   ...|+++|+||+|+........  +.......   ....++++
T Consensus        76 ~---~~a~~~i~v~d~t~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~--~~~~~~~~---~~~~~~~e  147 (194)
T d2bcgy1          76 Y---RGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEY--DVAKEFAD---ANKMPFLE  147 (194)
T ss_dssp             G---TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCH--HHHHHHHH---HTTCCEEE
T ss_pred             h---ccCCEEEEEEeCcchhhhhhHhhhhhhhhhcccCCceEEEEEeccccccccchhH--HHHhhhhh---ccCcceEE
Confidence            3   34899999999976322222 122333332   2589999999999986432211  11111111   12478999


Q ss_pred             eccCCCCChHHHHHHHHHhhc
Q 029158          174 VSSKSGAGIRSLRTVLSKIAR  194 (198)
Q Consensus       174 ~Sa~~~~gi~~l~~~i~~~~~  194 (198)
                      +||++|.|+++++++|.+.+.
T Consensus       148 ~SAk~g~gi~e~f~~l~~~i~  168 (194)
T d2bcgy1         148 TSALDSTNVEDAFLTMARQIK  168 (194)
T ss_dssp             CCTTTCTTHHHHHHHHHHHHH
T ss_pred             EecCcCccHHHHHHHHHHHHH
Confidence            999999999999999987654

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.87  E-value=9.6e-23  Score=140.97  Aligned_cols=153  Identities=14%  Similarity=0.063  Sum_probs=95.8

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEE-EEEE--eCCceEEEeCCCCccccchhHHHHHHHHHHHHHH
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI-NFFK--LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV   98 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~-~~~~--~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~   98 (198)
                      .+|+++|.+|+|||||++++.+++......+..+..... .+..  ....+.+|||+|....          ..+...++
T Consensus         4 iKi~vvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~i~~~~~~~~l~i~d~~g~~~~----------~~~~~~~~   73 (170)
T d1ek0a_           4 IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERF----------ASLAPMYY   73 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGG----------GGGHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCccccccccceeeccccccccccccccccccCCchhH----------HHHHHHHH
Confidence            589999999999999999999874222222222211111 1111  2357999999996432          22223344


Q ss_pred             hcccccceEEEEEeCCCCCCcCcH-HHHHHHHh---hCCcEEEEEeccCCCCcH-----HHHHHHHHHHHHHHhccCCCC
Q 029158           99 STRVSLKRVCLLIDTKWGVKPRDH-ELISLMER---SQTKYQVVLTKTDTVFPI-----DVARRAMQIEESLKANNSLVQ  169 (198)
Q Consensus        99 ~~~~~~d~vi~v~d~~~~~~~~~~-~~~~~~~~---~~~p~iiv~nK~Dl~~~~-----~~~~~~~~~~~~~~~~~~~~~  169 (198)
                      ..   +|++++|+|..+..+.... .++.....   ...|+++++||+|+....     ..++..+..++    .   ++
T Consensus        74 ~~---~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~v~nk~d~~~~~~~~~v~~~~~~~~~~~----~---~~  143 (170)
T d1ek0a_          74 RN---AQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDMLQEGGERKVAREEGEKLAEE----K---GL  143 (170)
T ss_dssp             TT---CSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHH----H---TC
T ss_pred             hc---cceEEEEEeCCcccchhhhhhhhhhhccccccccceeeeecccccccccchhhhhHHHHHHHHHH----c---CC
Confidence            43   8999999999863222222 22222222   257999999999985432     11122122111    1   47


Q ss_pred             CcEEeccCCCCChHHHHHHHHHhhc
Q 029158          170 PVMMVSSKSGAGIRSLRTVLSKIAR  194 (198)
Q Consensus       170 ~v~~~Sa~~~~gi~~l~~~i~~~~~  194 (198)
                      +++++||++|.|++++|..|.+.++
T Consensus       144 ~~~e~Sak~g~gV~e~F~~i~~~i~  168 (170)
T d1ek0a_         144 LFFETSAKTGENVNDVFLGIGEKIP  168 (170)
T ss_dssp             EEEECCTTTCTTHHHHHHHHHTTSC
T ss_pred             EEEEecCCCCcCHHHHHHHHHHHhc
Confidence            8999999999999999999987765

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.86  E-value=6.6e-22  Score=136.18  Aligned_cols=155  Identities=17%  Similarity=0.152  Sum_probs=95.4

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeE-EEEEEe--CCceEEEeCCCCccccchhHHHHHHHHHHHHH
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT-INFFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY   97 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~-~~~~~~--~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~   97 (198)
                      ..+|+++|.+|+|||||++++++........+..+.+.. ..+...  ...+.+|||||....          ..+...+
T Consensus         2 ~~Ki~vvG~~~vGKTSli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~i~Dt~G~~~~----------~~~~~~~   71 (166)
T d1g16a_           2 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERF----------RTITTAY   71 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGT----------SCCCHHH
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCccCCccceeEEEEEEEECCEEEEEEEEECCCchhh----------HHHHHHH
Confidence            358999999999999999999987422211122111111 112112  245778999995321          1112233


Q ss_pred             HhcccccceEEEEEeCCCCCCcCcHH-HHHHHHh---hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEE
Q 029158           98 VSTRVSLKRVCLLIDTKWGVKPRDHE-LISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMM  173 (198)
Q Consensus        98 ~~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~~---~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  173 (198)
                      +.   .+|++++|+|.++.-+....+ ++.....   ...|++++.||.|+.......+....+....      +.++++
T Consensus        72 ~~---~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~i~~~~k~d~~~~~~~~~~~~~~~~~~------~~~~~~  142 (166)
T d1g16a_          72 YR---GAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKEL------GIPFIE  142 (166)
T ss_dssp             HT---TEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTCCSCHHHHHHHHHHH------TCCEEE
T ss_pred             Hh---cCCEEEEEEECCCccCHHHHHhhhhhhhccccCcceeeeecchhhhhhhhhhHHHHHHHHHhc------CCeEEE
Confidence            33   389999999998743222222 2222222   2578999999999876543322222222221      479999


Q ss_pred             eccCCCCChHHHHHHHHHhhc
Q 029158          174 VSSKSGAGIRSLRTVLSKIAR  194 (198)
Q Consensus       174 ~Sa~~~~gi~~l~~~i~~~~~  194 (198)
                      +||++|+|+++++++|.+.+.
T Consensus       143 ~Sa~~~~~v~e~f~~l~~~i~  163 (166)
T d1g16a_         143 SSAKNDDNVNEIFFTLAKLIQ  163 (166)
T ss_dssp             CBTTTTBSHHHHHHHHHHHHH
T ss_pred             ECCCCCCCHHHHHHHHHHHHH
Confidence            999999999999999988764

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.86  E-value=6.2e-21  Score=132.62  Aligned_cols=165  Identities=20%  Similarity=0.207  Sum_probs=105.1

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE---EEEeCCceEEEeCCCCccccchhHHHHHHHHHHHHH
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY   97 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~---~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~   97 (198)
                      ...|+++|.+|+|||||+|+|++. .....+..+.++....   .......+.++|++|....    .............
T Consensus         5 ~~~I~iiG~~nvGKSSLin~L~~~-~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~   79 (179)
T d1egaa1           5 CGFIAIVGRPNVGKSTLLNKLLGQ-KISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHME----EKRAINRLMNKAA   79 (179)
T ss_dssp             EEEEEEECSSSSSHHHHHHHHHTC-SEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHH----HHHHHHHHHTCCT
T ss_pred             ccEEEEECCCCCCHHHHHHHHhCC-CceeeccCCCceEEEEEeeeecCCceeEeecCCCceec----chhhhhhhhhhcc
Confidence            346899999999999999999998 4555555555554322   2223456778899986431    1111111111111


Q ss_pred             HhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEeccC
Q 029158           98 VSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSK  177 (198)
Q Consensus        98 ~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~  177 (198)
                      ......+++++++.|+.. .......+...+.....|.++|+||+|.......  .....+.....  ....+++++||+
T Consensus        80 ~~~~~~~~~~l~~~d~~~-~~~~~~~~~~~l~~~~~~~i~v~~k~d~~~~~~~--~~~~~~~~~~~--~~~~~~~~vSA~  154 (179)
T d1egaa1          80 SSSIGDVELVIFVVEGTR-WTPDDEMVLNKLREGKAPVILAVNKVDNVQEKAD--LLPHLQFLASQ--MNFLDIVPISAE  154 (179)
T ss_dssp             TSCCCCEEEEEEEEETTC-CCHHHHHHHHHHHSSSSCEEEEEESTTTCCCHHH--HHHHHHHHHTT--SCCSEEEECCTT
T ss_pred             ccchhhcceeEEEEecCc-cchhHHHHHHHhhhccCceeeeeeeeeccchhhh--hhhHhhhhhhh--cCCCCEEEEeCc
Confidence            122344788888888765 2333344555566667899999999999876422  11222222221  235789999999


Q ss_pred             CCCChHHHHHHHHHhhcc
Q 029158          178 SGAGIRSLRTVLSKIARF  195 (198)
Q Consensus       178 ~~~gi~~l~~~i~~~~~~  195 (198)
                      +|+|+++|+++|.++++.
T Consensus       155 ~g~gi~~L~~~i~~~lpe  172 (179)
T d1egaa1         155 TGLNVDTIAAIVRKHLPE  172 (179)
T ss_dssp             TTTTHHHHHHHHHTTCCB
T ss_pred             CCCCHHHHHHHHHHhCCC
Confidence            999999999999998864

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=8.1e-22  Score=136.53  Aligned_cols=158  Identities=15%  Similarity=0.086  Sum_probs=96.9

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeE---EEEE--EeCCceEEEeCCCCccccchhHHHHHHHHHH
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT---INFF--KLGTKLCLVDLPGYGFAYAKEEVKDAWEELV   94 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~---~~~~--~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~   94 (198)
                      ...+|+++|.+|+|||||++++++.. .......+.+..+   ..+.  .....+.+||+++....          +.++
T Consensus         2 ~~~Kv~lvG~~~vGKTsLi~~~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~----------e~~~   70 (172)
T d2g3ya1           2 TYYRVVLIGEQGVGKSTLANIFAGVH-DSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGE----------NEWL   70 (172)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHCCC-CTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHH----------HHHH
T ss_pred             CEEEEEEECCCCcCHHHHHHHHHhCc-CCccccccceeeecceeeeccCCceeeeeeecccccccc----------cccc
Confidence            34689999999999999999999763 1111111111111   1121  12456789999874210          1111


Q ss_pred             HHHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHh----hCCcEEEEEeccCCCCcHHH--HHHHHHHHHHHHhccCC
Q 029158           95 KEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPIDV--ARRAMQIEESLKANNSL  167 (198)
Q Consensus        95 ~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~----~~~p~iiv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~  167 (198)
                      .  ......+|++++|+|.++..+-.. ..++..+..    .+.|+++|+||+|+......  ++. ..+.+..      
T Consensus        71 ~--~~~~~~~~~~ilvfd~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~-~~~a~~~------  141 (172)
T d2g3ya1          71 H--DHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEG-RACAVVF------  141 (172)
T ss_dssp             H--HCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHH-HHHHHHH------
T ss_pred             c--cccccccceeeeeecccccchhhhhhhhhhhhhhccccCCceEEEEeccccccccccccHHHH-HHHHHHc------
Confidence            1  122345899999999976211111 223333332    26899999999998754321  111 1222111      


Q ss_pred             CCCcEEeccCCCCChHHHHHHHHHhhcccc
Q 029158          168 VQPVMMVSSKSGAGIRSLRTVLSKIARFAK  197 (198)
Q Consensus       168 ~~~v~~~Sa~~~~gi~~l~~~i~~~~~~~r  197 (198)
                      +++++++||++|.|++++++.|.+.+...|
T Consensus       142 ~~~~~e~Sak~g~~i~~~f~~l~~~i~~rr  171 (172)
T d2g3ya1         142 DCKFIETSAAVQHNVKELFEGIVRQVRLRR  171 (172)
T ss_dssp             TCEEEECBTTTTBSHHHHHHHHHHHHHHHC
T ss_pred             CCeEEEEeCCCCcCHHHHHHHHHHHHHHcc
Confidence            478999999999999999999998876544

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=1.2e-22  Score=140.03  Aligned_cols=151  Identities=17%  Similarity=0.063  Sum_probs=95.3

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeE-----EEEEEeCCceEEEeCCCCccccchhHHHHHHHHHHH
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT-----INFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVK   95 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~-----~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~   95 (198)
                      ..+|+++|.+|+|||||+++|++...   ...+.+|...     ..+......+.+|||+|......          +..
T Consensus         4 ~~Kv~liG~~~vGKTsLl~~~~~~~f---~~~~~~t~~~~~~~~~~~~~~~~~l~i~d~~g~~~~~~----------~~~   70 (167)
T d1xtqa1           4 SRKIAILGYRSVGKSSLTIQFVEGQF---VDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSI----------FPQ   70 (167)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCC---CSCCCSSCCEEEEEEEEETTEEEEEEEEECCCCCTTCC----------CCG
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCC---CcccCcceecccceEEecCcEEEEeeeccccccccccc----------ccc
Confidence            46899999999999999999998732   2222222211     11111235788999999643211          111


Q ss_pred             HHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHH----hhCCcEEEEEeccCCCCcHH--HHHHHHHHHHHHHhccCCC
Q 029158           96 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLME----RSQTKYQVVLTKTDTVFPID--VARRAMQIEESLKANNSLV  168 (198)
Q Consensus        96 ~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~----~~~~p~iiv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~  168 (198)
                      .+   ...+|++++|+|..+..+... ..++..+.    ..+.|+++|+||+|+.....  .++. ..+.+..      +
T Consensus        71 ~~---~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~r~v~~~~~-~~~a~~~------~  140 (167)
T d1xtqa1          71 TY---SIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEG-KALAESW------N  140 (167)
T ss_dssp             GG---TSSCCEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSCCCEEEEEECTTCGGGCCSCHHHH-HHHHHHH------T
T ss_pred             hh---hhhhhhhhhhcccchhhhhhhhhhhhhhhhhcccccccceeeeccccccccccchhHHHH-HHHHHHc------C
Confidence            22   234999999999986322222 22333332    23589999999999865432  2222 1222211      4


Q ss_pred             CCcEEeccCCCCChHHHHHHHHHhhc
Q 029158          169 QPVMMVSSKSGAGIRSLRTVLSKIAR  194 (198)
Q Consensus       169 ~~v~~~Sa~~~~gi~~l~~~i~~~~~  194 (198)
                      .+++++||++|.|++++++.|...+.
T Consensus       141 ~~~~e~Sak~~~~v~~~f~~li~~~~  166 (167)
T d1xtqa1         141 AAFLESSAKENQTAVDVFRRIILEAE  166 (167)
T ss_dssp             CEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred             CEEEEEecCCCCCHHHHHHHHHHHhc
Confidence            68999999999999999998877653

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.86  E-value=3.5e-22  Score=138.51  Aligned_cols=151  Identities=17%  Similarity=0.115  Sum_probs=74.6

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCc-eeEEE---EEE--eCCceEEEeCCCCccccchhHHHHHHHHHH
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGL-TQTIN---FFK--LGTKLCLVDLPGYGFAYAKEEVKDAWEELV   94 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~-t~~~~---~~~--~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~   94 (198)
                      ..+|+++|.+|+|||||+++|++...   .....++ +....   +..  ....+.+|||||...          +..+.
T Consensus         6 ~~Ki~vvG~~~vGKTsLi~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~e~----------~~~~~   72 (173)
T d2fu5c1           6 LFKLLLIGDSGVGKTCVLFRFSEDAF---NSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQER----------FRTIT   72 (173)
T ss_dssp             EEEEEEECCCCC-------------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC-------------------C
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCC---CCccCccccceEEEEEEEECCEEEEEEEEECCCchh----------hHHHH
Confidence            35899999999999999999998631   1121111 11211   111  235678899999521          12222


Q ss_pred             HHHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHH---hhCCcEEEEEeccCCCCcHHH--HHHHHHHHHHHHhccCCC
Q 029158           95 KEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLME---RSQTKYQVVLTKTDTVFPIDV--ARRAMQIEESLKANNSLV  168 (198)
Q Consensus        95 ~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~---~~~~p~iiv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~  168 (198)
                      ..+   ...+|++++|+|+++..+... ..++..+.   ..+.|+++|+||+|+......  ++......+       .+
T Consensus        73 ~~~---~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~~k~D~~~~~~~~~~~~~~~~~~-------~~  142 (173)
T d2fu5c1          73 TAY---YRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALD-------YG  142 (173)
T ss_dssp             CTT---TTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHH-------HT
T ss_pred             HHh---ccCCCEEEEEEECCChhhHHHHHHHHHHhhhhccCCceEEEEEecccchhhcccHHHHHHHHHHh-------cC
Confidence            222   344899999999986322222 12233333   235899999999999864322  121111111       14


Q ss_pred             CCcEEeccCCCCChHHHHHHHHHhhc
Q 029158          169 QPVMMVSSKSGAGIRSLRTVLSKIAR  194 (198)
Q Consensus       169 ~~v~~~Sa~~~~gi~~l~~~i~~~~~  194 (198)
                      .+++++||++|+|+++++++|.+.+.
T Consensus       143 ~~~~e~Sa~~g~gv~e~f~~l~~~i~  168 (173)
T d2fu5c1         143 IKFMETSAKANINVENAFFTLARDIK  168 (173)
T ss_dssp             CEEEECCC---CCHHHHHHHHHHHHH
T ss_pred             CEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            78999999999999999999988764

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.85  E-value=3.4e-21  Score=132.35  Aligned_cols=152  Identities=18%  Similarity=0.151  Sum_probs=93.4

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE---EEEeCCceEEEeCCCCccccchhHHHHHHHHHHHHH
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY   97 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~---~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~   97 (198)
                      ..+|+++|.+|+|||||++++++...........+......   .......+.++|++|.....         ....+.+
T Consensus         2 ~~Kv~liG~~~vGKTsLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~   72 (165)
T d1z06a1           2 IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFR---------KSMVQHY   72 (165)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHH---------TTTHHHH
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCccCcccccccceeeeeeeccceEEEEEeccCchhhc---------cccceee
Confidence            46899999999999999999998732222222222222211   21224578999999963210         1112234


Q ss_pred             HhcccccceEEEEEeCCCCCCcCc-HHHHHHHHh----hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcE
Q 029158           98 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVM  172 (198)
Q Consensus        98 ~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~----~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~  172 (198)
                      +.   .+|++++|+|..+..+-.. ..++..+.+    .+.|+++|+||+|+........  +..++.....   +++++
T Consensus        73 ~~---~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi~lvgnK~Dl~~~~~v~~--~~~~~~~~~~---~~~~~  144 (165)
T d1z06a1          73 YR---NVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPT--DLAQKFADTH---SMPLF  144 (165)
T ss_dssp             HT---TCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCH--HHHHHHHHHT---TCCEE
T ss_pred             ec---CCCceEEEEEeehhhhhhhhhhhhHHHHhhccCCCCeEEEEeccccchhccchhH--HHHHHHHHHC---CCEEE
Confidence            44   3899999999987433222 234444443    2589999999999976432111  1222222221   47899


Q ss_pred             EeccCC---CCChHHHHHHH
Q 029158          173 MVSSKS---GAGIRSLRTVL  189 (198)
Q Consensus       173 ~~Sa~~---~~gi~~l~~~i  189 (198)
                      ++||++   ++|++++|++|
T Consensus       145 e~SAkt~~~~~~V~e~F~~l  164 (165)
T d1z06a1         145 ETSAKNPNDNDHVEAIFMTL  164 (165)
T ss_dssp             ECCSSSGGGGSCHHHHHHHH
T ss_pred             EEecccCCcCcCHHHHHHHh
Confidence            999997   56998988876

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=4.6e-21  Score=134.83  Aligned_cols=154  Identities=13%  Similarity=0.019  Sum_probs=96.5

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE--EEE---eCCceEEEeCCCCccccchhHHHHHHHHHHHH
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE   96 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~--~~~---~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~   96 (198)
                      .+|+++|.+|+|||||++++++..   ....+.+|..+..  ...   ....+.+|||+|....          ..+...
T Consensus         4 iKvvllG~~~vGKTSli~r~~~~~---f~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~g~~~~----------~~~~~~   70 (191)
T d2ngra_           4 IKCVVVGDGAVGKTCLLISYTTNK---FPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY----------DRLRPL   70 (191)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSC---CCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGG----------TTTGGG
T ss_pred             eEEEEECCCCcCHHHHHHHHHhCC---CCCCcCCceeeecceeEeeCCceeeeeccccccchhh----------hhhhhh
Confidence            589999999999999999999873   2333333333221  111   1356899999996321          112222


Q ss_pred             HHhcccccceEEEEEeCCCCCCcCc--HHHHHHHHhh--CCcEEEEEeccCCCCcHHHHHH----------HHHHHHHHH
Q 029158           97 YVSTRVSLKRVCLLIDTKWGVKPRD--HELISLMERS--QTKYQVVLTKTDTVFPIDVARR----------AMQIEESLK  162 (198)
Q Consensus        97 ~~~~~~~~d~vi~v~d~~~~~~~~~--~~~~~~~~~~--~~p~iiv~nK~Dl~~~~~~~~~----------~~~~~~~~~  162 (198)
                      ++   ..+|++++|+|.++..+-..  .++...+...  +.|+++|+||+|+.........          .+..++...
T Consensus        71 ~~---~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~~~~~i~lvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~  147 (191)
T d2ngra_          71 SY---PQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLAR  147 (191)
T ss_dssp             GC---TTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHH
T ss_pred             cc---cccceeecccccchHHHHHHHHHHHHHHHhhcCCCCceEEEeccccccccchhhhhhhhcccccccHHHHHHHHH
Confidence            33   34899999999986322111  1233333332  6899999999999765322111          111112221


Q ss_pred             hccCCCCCcEEeccCCCCChHHHHHHHHHhh
Q 029158          163 ANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA  193 (198)
Q Consensus       163 ~~~~~~~~v~~~Sa~~~~gi~~l~~~i~~~~  193 (198)
                      ..  ...+++++||++|.|++++++.+...+
T Consensus       148 ~~--~~~~~~e~SAk~~~~V~e~f~~l~~~~  176 (191)
T d2ngra_         148 DL--KAVKYVECSALTQKGLKNVFDEAILAA  176 (191)
T ss_dssp             HT--TCSCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             Hc--CCCeEEEEeCCCCcCHHHHHHHHHHHH
Confidence            11  246899999999999999999887643

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.85  E-value=3.6e-21  Score=131.60  Aligned_cols=155  Identities=16%  Similarity=0.117  Sum_probs=95.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHHHHhccc
Q 029158           23 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRV  102 (198)
Q Consensus        23 ~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (198)
                      ||+++|++|+|||||+++|.+. .+....+..+.+.. .....+....++|++|.....          .   .......
T Consensus         2 KI~liG~~nvGKSSLln~l~~~-~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~~~~~~~----------~---~~~~~~~   66 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKND-RLATLQPTWHPTSE-ELAIGNIKFTTFDLGGHIQAR----------R---LWKDYFP   66 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS-CCCCCCCCCSCEEE-EECCTTCCEEEEECCCSGGGG----------G---GGGGGCT
T ss_pred             EEEEECCCCCCHHHHHHHHhCC-CCCeeeceeeEeEE-EeccCCeeEEEEeeccchhhh----------h---hHhhhhh
Confidence            7999999999999999999998 33333333322221 222336789999999863321          1   1122223


Q ss_pred             ccceEEEEEeCCCCCCcCc-HHHHHHHH----hhCCcEEEEEeccCCCCcHHHHHHHHHHHH-----HHHhccCCCCCcE
Q 029158          103 SLKRVCLLIDTKWGVKPRD-HELISLME----RSQTKYQVVLTKTDTVFPIDVARRAMQIEE-----SLKANNSLVQPVM  172 (198)
Q Consensus       103 ~~d~vi~v~d~~~~~~~~~-~~~~~~~~----~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~~v~  172 (198)
                      .++++++++|.++...... ..++....    ..+.|+++++||.|+.......+..+.+..     ..........+++
T Consensus        67 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~k~d~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  146 (166)
T d2qtvb1          67 EVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVF  146 (166)
T ss_dssp             TCSEEEEEEETTCGGGHHHHHHHHHHHHTCTTTTTCCEEEEEECTTSSSCCCHHHHHHHHTCSSCCC---CCSSCCEEEE
T ss_pred             heeeeeeeccccchhhhhhhhHHHHhhhhhhccCCceEEEEeccccccccCCHHHHHHHhhhhhhhHHHhhcccCCCEEE
Confidence            4889999999876322111 11112121    236899999999999865444333333211     0011112235689


Q ss_pred             EeccCCCCChHHHHHHHHHh
Q 029158          173 MVSSKSGAGIRSLRTVLSKI  192 (198)
Q Consensus       173 ~~Sa~~~~gi~~l~~~i~~~  192 (198)
                      ++||++|+|++++++||.++
T Consensus       147 ~~SA~tg~Gv~e~~~~l~~~  166 (166)
T d2qtvb1         147 MCSVVMRNGYLEAFQWLSQY  166 (166)
T ss_dssp             EEBTTTTBSHHHHHHHHTTC
T ss_pred             EeeCCCCCCHHHHHHHHhCC
Confidence            99999999999999999763

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=99.84  E-value=1.7e-20  Score=128.85  Aligned_cols=159  Identities=17%  Similarity=0.109  Sum_probs=102.1

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHHHHh
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS   99 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~   99 (198)
                      ...+|+++|.+|+|||||++++++.. .....+..+ .........+..+.++|.+|.....             .....
T Consensus         4 ke~kI~ivG~~~vGKSSLi~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~   68 (169)
T d1upta_           4 REMRILILGLDGAGKTTILYRLQVGE-VVTTIPTIG-FNVETVTYKNLKFQVWDLGGLTSIR-------------PYWRC   68 (169)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHSS-CCCCCCCSS-EEEEEEEETTEEEEEEEECCCGGGG-------------GGGGG
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCC-Ccceecccc-eeeeeeccCceEEEEeecccccccc-------------ccchh
Confidence            34689999999999999999999884 222111111 1112233346788999999964321             12222


Q ss_pred             cccccceEEEEEeCCCCCCcCcH-H-HHHHHH---hhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEe
Q 029158          100 TRVSLKRVCLLIDTKWGVKPRDH-E-LISLME---RSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMV  174 (198)
Q Consensus       100 ~~~~~d~vi~v~d~~~~~~~~~~-~-~~~~~~---~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  174 (198)
                      .....+.+++++|.......... . +.....   ....|+++++||.|+.......+........  .......+++++
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iv~nk~Dl~~~~~~~~i~~~~~~~--~~~~~~~~~~~~  146 (169)
T d1upta_          69 YYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLP--ALKDRKWQIFKT  146 (169)
T ss_dssp             GCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGG--GCTTSCEEEEEC
T ss_pred             hhhhhhhhhhhhhhhhcchhhhccchhhhhhhhhccccceEEEEEeeccccccccHHHHHHHHHHH--HHhcCCCEEEEE
Confidence            33447889999998753222221 1 122221   2258999999999998765444433333222  122345789999


Q ss_pred             ccCCCCChHHHHHHHHHhhcc
Q 029158          175 SSKSGAGIRSLRTVLSKIARF  195 (198)
Q Consensus       175 Sa~~~~gi~~l~~~i~~~~~~  195 (198)
                      ||++|+|+++++++|.+.++.
T Consensus       147 SA~~g~gv~e~~~~l~~~l~~  167 (169)
T d1upta_         147 SATKGTGLDEAMEWLVETLKS  167 (169)
T ss_dssp             CTTTCTTHHHHHHHHHHHHHT
T ss_pred             eCCCCCCHHHHHHHHHHHHHh
Confidence            999999999999999988764

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=2e-20  Score=129.71  Aligned_cols=149  Identities=7%  Similarity=-0.015  Sum_probs=93.5

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEE---EEE--EeCCceEEEeCCCCccccchhHHHHHHHHHHH
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---NFF--KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVK   95 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~---~~~--~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~   95 (198)
                      ..+|+++|.+|+|||||++++++.. .   .....++.+.   .+.  .....+.+|||+|...           .    
T Consensus         5 ~~ki~vlG~~~vGKTsLi~~~~~~~-f---~~~~~t~~~~~~~~i~v~~~~~~l~i~Dt~g~~~-----------~----   65 (175)
T d2bmja1           5 ELRLGVLGDARSGKSSLIHRFLTGS-Y---QVLEKTESEQYKKEMLVDGQTHLVLIREEAGAPD-----------A----   65 (175)
T ss_dssp             EEEEEEECCTTTTHHHHHHHHHHSC-C---CCCCCSSCEEEEEEEEETTEEEEEEEEECSSCCC-----------H----
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCC-C---CCcCCccceeEEEEeecCceEEEEEEeecccccc-----------c----
Confidence            4789999999999999999999874 2   2222222221   111  1235789999999632           1    


Q ss_pred             HHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHh------hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCC
Q 029158           96 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER------SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLV  168 (198)
Q Consensus        96 ~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~------~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  168 (198)
                      .|++.   +|++++|+|.++..+-.. ..++.++..      ...|+++|+||.|+.......-..+..++....  ...
T Consensus        66 ~~~~~---ad~~ilVfd~~~~~Sf~~~~~~~~~i~~~~~~~~~~~pi~lV~~k~d~d~~~~~~v~~~~~~~~~~~--~~~  140 (175)
T d2bmja1          66 KFSGW---ADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALCAD--MKR  140 (175)
T ss_dssp             HHHHH---CSEEEEEEETTCHHHHHHHHHHHHHHHHHCC--CCCCEEEEEEECTTCCSSSCCCSCHHHHHHHHHT--STT
T ss_pred             ccccc---cceeEEEeecccchhhhhhHHHHHHHHHHhhcccCCccEEEEeeecCcchhhhcchhHHHHHHHHHH--hCC
Confidence            12332   899999999986322111 223444332      246899999999985432211011122222222  124


Q ss_pred             CCcEEeccCCCCChHHHHHHHHHhh
Q 029158          169 QPVMMVSSKSGAGIRSLRTVLSKIA  193 (198)
Q Consensus       169 ~~v~~~Sa~~~~gi~~l~~~i~~~~  193 (198)
                      .+++++||+++.|++++|..+.+.+
T Consensus       141 ~~~~e~SAk~~~~v~~~F~~l~~~i  165 (175)
T d2bmja1         141 CSYYETCATYGLNVDRVFQEVAQKV  165 (175)
T ss_dssp             EEEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred             CeEEEeCCCCCcCHHHHHHHHHHHH
Confidence            6899999999999999999887654

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.84  E-value=1.7e-21  Score=143.03  Aligned_cols=114  Identities=19%  Similarity=0.240  Sum_probs=83.4

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCc----cceee------cC------CCCceeE---EEEEEeCCceEEEeCCCCccc
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQW----GVVRT------SD------KPGLTQT---INFFKLGTKLCLVDLPGYGFA   80 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~~----~~~~~------~~------~~~~t~~---~~~~~~~~~~~iiDtpG~~~~   80 (198)
                      ..++|+++|+.|+|||||+.+|+...    ....+      .+      ..+.|..   ..+...+..+.++||||+.+ 
T Consensus         5 ~iRni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~~~~~~~~n~iDtPG~~d-   83 (276)
T d2bv3a2           5 RLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDAPGHVD-   83 (276)
T ss_dssp             GEEEEEEEECTTSCHHHHHHHHHHHHTSSCC-------------------CCCCCCCSEEEEEETTEEEEEECCCSSSS-
T ss_pred             hceEEEEEeCCCCCHHHHHHHHHHhcCccccccceecCceEEeccHHHHhcCCccccceeeeccCCeEEEEecCCchhh-
Confidence            45679999999999999999997421    00000      00      1111211   33445578999999999844 


Q ss_pred             cchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCC
Q 029158           81 YAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF  146 (198)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~  146 (198)
                                  +..+.......+|.+++|+|+.+|.......+++++...++|.++++||+|...
T Consensus        84 ------------F~~e~~~~l~~~D~avlVvda~~Gv~~~T~~~w~~a~~~~lP~i~fINKmDr~~  137 (276)
T d2bv3a2          84 ------------FTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDKTG  137 (276)
T ss_dssp             ------------CSTTHHHHHHHCCEEEEEEETTTSSCHHHHHHHHHHHTTTCCEEEEEECTTSTT
T ss_pred             ------------hHHHHHHHHHhhhheEEeccccCCcchhHHHHHHHHHHcCCCEEEEEecccccc
Confidence                        223344444559999999999999999999999999999999999999999754

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=99.83  E-value=1.8e-20  Score=137.29  Aligned_cols=111  Identities=24%  Similarity=0.320  Sum_probs=84.6

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCccc----eeec------C------CCCceeE---EEEEEeCCceEEEeCCCCccccc
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQWGV----VRTS------D------KPGLTQT---INFFKLGTKLCLVDLPGYGFAYA   82 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~~~~----~~~~------~------~~~~t~~---~~~~~~~~~~~iiDtpG~~~~~~   82 (198)
                      ++|+++|+.++|||||+.+|+.....    ..+.      +      ..+.|..   ..+...+..+.++||||+     
T Consensus         3 RNv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~~g~~~~D~~~~E~~r~~ti~~~~~~~~~~~~~~n~iDtPGh-----   77 (267)
T d2dy1a2           3 RTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGY-----   77 (267)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCS-----
T ss_pred             eEEEEEcCCCCcHHHHHHHHHHHcCCchhhccchhccccccchHHHHHhCCeEEeecccccccccceeEEccCch-----
Confidence            57999999999999999999743100    0000      0      0112222   234445778999999998     


Q ss_pred             hhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCC
Q 029158           83 KEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV  145 (198)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~  145 (198)
                              .++..+.......+|++++|+|+.+|........++.+...++|.++++||+|..
T Consensus        78 --------~dF~~e~~~al~~~D~avlvvda~~Gv~~~t~~~~~~~~~~~~p~~i~iNk~D~~  132 (267)
T d2dy1a2          78 --------GDFVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLGLPRMVVVTKLDKG  132 (267)
T ss_dssp             --------GGGHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECGGGC
T ss_pred             --------hhhhhhhhhhhcccCceEEEeeccCCccchhHHHHHhhhhccccccccccccccc
Confidence                    4455566666667999999999999999999999999999999999999999975

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.83  E-value=1.2e-20  Score=131.32  Aligned_cols=154  Identities=15%  Similarity=0.083  Sum_probs=93.8

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE---EEE--eCCceEEEeCCCCccccchhHHHHHHHHHHHH
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFK--LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE   96 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~---~~~--~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~   96 (198)
                      .+|+++|.+|+|||||+++++....   ...+.++..+..   +..  ....+.+||++|....          ......
T Consensus         3 ~KivliG~~~vGKTsli~r~~~~~f---~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~----------~~~~~~   69 (179)
T d1m7ba_           3 CKIVVVGDSQCGKTALLHVFAKDCF---PENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYY----------DNVRPL   69 (179)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSCC---CSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGG----------TTTGGG
T ss_pred             eEEEEECCCCcCHHHHHHHHHhCCC---CCccCCceeecccccccccceEEeeccccccccccc----------cccccc
Confidence            4799999999999999999998742   233333332221   111  1356889999996321          111112


Q ss_pred             HHhcccccceEEEEEeCCCCCCcCc--HHHHHHHHh--hCCcEEEEEeccCCCCcHHHHHH----------HHHHHHHHH
Q 029158           97 YVSTRVSLKRVCLLIDTKWGVKPRD--HELISLMER--SQTKYQVVLTKTDTVFPIDVARR----------AMQIEESLK  162 (198)
Q Consensus        97 ~~~~~~~~d~vi~v~d~~~~~~~~~--~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~~~~~----------~~~~~~~~~  162 (198)
                      +   ...+|++++|+|..+..+-..  ..+...+..  .+.|+++|+||+|+.........          .++.++...
T Consensus        70 ~---~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~V~~~e~~~~a~  146 (179)
T d1m7ba_          70 S---YPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAK  146 (179)
T ss_dssp             G---CTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHH
T ss_pred             h---hhhhhhhheeeecccCCCHHHHHHHHHHHHhccCCcceEEEEEecccccccchhhHHHhhhhcCcchHHHHHHHHH
Confidence            2   334899999999976321111  122333332  26899999999998754321110          011111111


Q ss_pred             hccCCCCCcEEeccCCCC-ChHHHHHHHHHhh
Q 029158          163 ANNSLVQPVMMVSSKSGA-GIRSLRTVLSKIA  193 (198)
Q Consensus       163 ~~~~~~~~v~~~Sa~~~~-gi~~l~~~i~~~~  193 (198)
                      ..  ...+++++||++|+ |++++|+.+...+
T Consensus       147 ~~--~~~~y~E~SAk~~~n~i~~~F~~~~~~~  176 (179)
T d1m7ba_         147 QI--GAATYIECSALQSENSVRDIFHVATLAC  176 (179)
T ss_dssp             HH--TCSEEEECBTTTBHHHHHHHHHHHHHHH
T ss_pred             Hh--CCCeEEEEeCCCCCcCHHHHHHHHHHHH
Confidence            11  13679999999998 5999999887654

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.83  E-value=1.1e-21  Score=142.76  Aligned_cols=154  Identities=19%  Similarity=0.206  Sum_probs=94.8

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCccc-----------------------------eeecCCCCceeEE---EEEEeCCc
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQWGV-----------------------------VRTSDKPGLTQTI---NFFKLGTK   68 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~~~~-----------------------------~~~~~~~~~t~~~---~~~~~~~~   68 (198)
                      ..+|+++|..++|||||+.+|+.....                             .......+.+.+.   .+...+.+
T Consensus        24 ~iNi~iiGHVD~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~~~  103 (245)
T d1r5ba3          24 HVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEHRR  103 (245)
T ss_dssp             EEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSSEE
T ss_pred             ceEEEEEeeCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCCccchhhhhhhccccccccCccccccccccccccce
Confidence            457999999999999999999532100                             0001111122221   23333568


Q ss_pred             eEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCC-------CcCcHHHHHHHHhhCCc-EEEEEe
Q 029158           69 LCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGV-------KPRDHELISLMERSQTK-YQVVLT  140 (198)
Q Consensus        69 ~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~-------~~~~~~~~~~~~~~~~p-~iiv~n  140 (198)
                      +.++||||+             ..+..+.+.....+|++++|+|+.+|.       ..+..+.+..+...++| +++++|
T Consensus       104 i~~iDtPGH-------------~df~~~~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT~e~l~l~~~~~i~~iiv~iN  170 (245)
T d1r5ba3         104 FSLLDAPGH-------------KGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVIN  170 (245)
T ss_dssp             EEECCCCC------------------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEE
T ss_pred             eeeeccccc-------------ccchhhhhhhhhhhcceeeEEEcCCCccCCccccccchHHHHHHHHHcCCCeEEEEEE
Confidence            999999998             667788888889999999999999864       33667788888877776 779999


Q ss_pred             ccCCCCcH----HHHHHHHHHHHHHHhccC----CCCCcEEeccCCCCChHHHHH
Q 029158          141 KTDTVFPI----DVARRAMQIEESLKANNS----LVQPVMMVSSKSGAGIRSLRT  187 (198)
Q Consensus       141 K~Dl~~~~----~~~~~~~~~~~~~~~~~~----~~~~v~~~Sa~~~~gi~~l~~  187 (198)
                      |+|++...    ...+..+.++..+.....    ..++++|+||++|+|+.++.+
T Consensus       171 KmD~~~~~~~e~~~~ei~~~l~~~l~~i~~~~~~~~v~~VPiSA~~G~nI~~~~~  225 (245)
T d1r5ba3         171 KMDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVD  225 (245)
T ss_dssp             CTTSTTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCCC
T ss_pred             cCCCCccchhHHHHHHHHHHHHHHHHHHhCcCcccCCEEEEeeccCCCCcccchh
Confidence            99997532    233444444444333221    136899999999999987644

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.82  E-value=2.2e-20  Score=135.19  Aligned_cols=149  Identities=17%  Similarity=0.235  Sum_probs=107.6

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCcc-c----------------------------eeecCCCCceeE---EEEEEeCCc
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQWG-V----------------------------VRTSDKPGLTQT---INFFKLGTK   68 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~~~-~----------------------------~~~~~~~~~t~~---~~~~~~~~~   68 (198)
                      ..+|+++|..++|||||+.+|+.... +                            .......+.|.+   ..+...+.+
T Consensus         6 ~iNi~iiGHvD~GKsTl~~~ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~   85 (239)
T d1f60a3           6 HINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYQ   85 (239)
T ss_dssp             EEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSSEE
T ss_pred             ccEEEEEeCCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCccceeeecccchhhhcceeccccceeEeccCCEE
Confidence            35899999999999999999963100 0                            000111234433   334555789


Q ss_pred             eEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCC-------CCcCcHHHHHHHHhhCCc-EEEEEe
Q 029158           69 LCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG-------VKPRDHELISLMERSQTK-YQVVLT  140 (198)
Q Consensus        69 ~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~-------~~~~~~~~~~~~~~~~~p-~iiv~n  140 (198)
                      +.|+||||+             .++..+++.+...+|++++|+|+..|       ...+..+.+..+...++| +|+++|
T Consensus        86 i~iiDtPGH-------------~df~~~~~~g~~~~D~ailvvda~~G~~e~g~~~~~QT~eh~~~~~~~gv~~iiv~iN  152 (239)
T d1f60a3          86 VTVIDAPGH-------------RDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVN  152 (239)
T ss_dssp             EEEEECCCC-------------TTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTCCEEEEEEE
T ss_pred             EEEEECCCc-------------HHHHHHHHHHHHHhCEEEEEEECCCCccccccCchHhHHHHHHHHHHcCCCeEEEEEE
Confidence            999999998             67788999999999999999999875       345677778888888876 788999


Q ss_pred             ccCCCCcH--HHHHHHHHHHHHHHhcc--CCCCCcEEeccCCCCCh
Q 029158          141 KTDTVFPI--DVARRAMQIEESLKANN--SLVQPVMMVSSKSGAGI  182 (198)
Q Consensus       141 K~Dl~~~~--~~~~~~~~~~~~~~~~~--~~~~~v~~~Sa~~~~gi  182 (198)
                      |+|+....  ..++....+.+.+....  ....+++++|+..|.|+
T Consensus       153 KmD~~~~d~~~~~~~~~el~~~l~~~~~~~~~i~~ipiSa~~G~ni  198 (239)
T d1f60a3         153 KMDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNM  198 (239)
T ss_dssp             CGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTT
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEEccCCCcc
Confidence            99998643  23445555555554433  22477899999999886

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.82  E-value=2.6e-19  Score=127.26  Aligned_cols=156  Identities=23%  Similarity=0.323  Sum_probs=91.4

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEE----eCCceEEEeCCCCccccchhHHHHHHHHHHHHH
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK----LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY   97 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~----~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~   97 (198)
                      +.|+++|++|+|||||+++|++.+ ....  .+..+.......    .+..+.+||+||...         ........+
T Consensus         1 k~V~ivG~~~~GKTsLl~~l~~~~-~~~~--~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~---------~~~~~~~~~   68 (207)
T d2fh5b1           1 RAVLFVGLCDSGKTLLFVRLLTGQ-YRDT--QTSITDSSAIYKVNNNRGNSLTLIDLPGHES---------LRFQLLDRF   68 (207)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHSC-CCCB--CCCCSCEEEEEECSSTTCCEEEEEECCCCHH---------HHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCC-CCcc--cCCeeEEEEEEEEeeeeeeeeeeeecccccc---------ccchhhhhh
Confidence            469999999999999999999874 2222  222222222222    246799999999621         111223333


Q ss_pred             HhcccccceEEEEEeCCCCCCc--Cc-HHHHHHHH-----hhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhcc----
Q 029158           98 VSTRVSLKRVCLLIDTKWGVKP--RD-HELISLME-----RSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANN----  165 (198)
Q Consensus        98 ~~~~~~~d~vi~v~d~~~~~~~--~~-~~~~~~~~-----~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~----  165 (198)
                      +.   .++.+++|+|++.....  .. ..+...+.     ..+.|+++|+||+|++.....++..+.++..+....    
T Consensus        69 ~~---~~~~~i~v~D~~d~~~~~~~~~~~l~~~l~~~~~~~~~~pilvv~NK~Dl~~a~~~~~i~~~l~~e~~~~~~~~~  145 (207)
T d2fh5b1          69 KS---SARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRS  145 (207)
T ss_dssp             GG---GEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC
T ss_pred             hh---hccccceEEEcccccccHHHHHHHHHHHHHhHHHhhcCCcEEEEEECcccCCCCCHHHHHHHHHHHhhhhhhccc
Confidence            33   48999999999752111  11 12223332     125799999999999876555544444433222100    


Q ss_pred             ----------------------------CCCCCcEEeccCCCCC------hHHHHHHHHHh
Q 029158          166 ----------------------------SLVQPVMMVSSKSGAG------IRSLRTVLSKI  192 (198)
Q Consensus       166 ----------------------------~~~~~v~~~Sa~~~~g------i~~l~~~i~~~  192 (198)
                                                  .....++++|++++.|      ++.+.+|+.+.
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~S~~~~~~~~~~~~i~~~~~wl~~~  206 (207)
T d2fh5b1         146 AAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI  206 (207)
T ss_dssp             ------------CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred             cccceeehhhhhhhhhcccchhhhHHhccCCcEEEEeeecCCCcccccccHHHHHHHHHHh
Confidence                                        0013478899999887      88888888764

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.81  E-value=1e-19  Score=126.75  Aligned_cols=160  Identities=18%  Similarity=0.126  Sum_probs=94.0

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHHHH
Q 029158           19 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV   98 (198)
Q Consensus        19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~   98 (198)
                      ....||+++|.+|+|||||+++|.+.. .....+....+.. .....+..+.++|+++......             ...
T Consensus        11 ~k~~kI~lvG~~~vGKTsLl~~l~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-------------~~~   75 (186)
T d1f6ba_          11 KKTGKLVFLGLDNAGKTTLLHMLKDDR-LGQHVPTLHPTSE-ELTIAGMTFTTFDLGGHIQARR-------------VWK   75 (186)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCSCE-EEEETTEEEEEEEECC----CC-------------GGG
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCC-Ccceeccccccee-EEEecccccccccccchhhhhh-------------HHh
Confidence            345789999999999999999999884 2222222222221 2233356788899988643211             112


Q ss_pred             hcccccceEEEEEeCCCCCCcCc-HHHH-HHHH---hhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHh----------
Q 029158           99 STRVSLKRVCLLIDTKWGVKPRD-HELI-SLME---RSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKA----------  163 (198)
Q Consensus        99 ~~~~~~d~vi~v~d~~~~~~~~~-~~~~-~~~~---~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~----------  163 (198)
                      ......+.+++++|......... ...+ ....   ..+.|+++++||.|+..........+.+......          
T Consensus        76 ~~~~~~~~~~~~~d~~d~~~~~~~~~~~~~~~~~~~~~~~~~li~~~K~D~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  155 (186)
T d1f6ba_          76 NYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKE  155 (186)
T ss_dssp             GGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCTTT
T ss_pred             hhhcccceeeeeeeccCccchHHHHHHHHHhhcccccCCCceEEEEeccCccccCCHHHHHHHHhhcccchhhhhhhHHH
Confidence            22234789999999875211111 1111 1111   1368999999999998654443332222211000          


Q ss_pred             ccCCCCCcEEeccCCCCChHHHHHHHHHhh
Q 029158          164 NNSLVQPVMMVSSKSGAGIRSLRTVLSKIA  193 (198)
Q Consensus       164 ~~~~~~~v~~~Sa~~~~gi~~l~~~i~~~~  193 (198)
                      ......+++++||++|+|++|+++||.+++
T Consensus       156 ~~~~~~~~~~~SA~tg~Gi~e~~~~l~~~i  185 (186)
T d1f6ba_         156 LNARPLEVFMCSVLKRQGYGEGFRWMAQYI  185 (186)
T ss_dssp             CCSCCEEEEECBTTTTBSHHHHHHHHHTTC
T ss_pred             hhcCCCEEEEEeCCCCCCHHHHHHHHHHhh
Confidence            011134689999999999999999999865

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.80  E-value=9.7e-20  Score=130.97  Aligned_cols=151  Identities=19%  Similarity=0.271  Sum_probs=100.7

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCccc-----------------------------eeecCCCCceeEE---EEEEeCCc
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQWGV-----------------------------VRTSDKPGLTQTI---NFFKLGTK   68 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~~~~-----------------------------~~~~~~~~~t~~~---~~~~~~~~   68 (198)
                      ..+|+++|..++|||||+.+|+.....                             .......+.|...   .+...+..
T Consensus         3 ~iNi~viGHVd~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~~~   82 (224)
T d1jnya3           3 HLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKYF   82 (224)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSCE
T ss_pred             ccEEEEEecCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCcccccccccccCchhhhcCCccccceEEEEecCCce
Confidence            458999999999999999999642100                             0011122233322   23334678


Q ss_pred             eEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCC-------CcCcHHHHHHHHhhCC-cEEEEEe
Q 029158           69 LCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGV-------KPRDHELISLMERSQT-KYQVVLT  140 (198)
Q Consensus        69 ~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~-------~~~~~~~~~~~~~~~~-p~iiv~n  140 (198)
                      +.++||||+             .++..+...+...+|++++|+|+.+|.       ..+..+.+..+...+. ++|+++|
T Consensus        83 i~iiDtPGH-------------~df~~~~~~g~~~~D~allVVda~~G~~~~t~~~~~qt~e~l~~~~~~~~~~iIv~iN  149 (224)
T d1jnya3          83 FTIIDAPGH-------------RDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVN  149 (224)
T ss_dssp             EEECCCSSS-------------TTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEE
T ss_pred             eEEeeCCCc-------------HHHHHHHHHHHHhhceEEEEEecccCcccccccccchhHHHHHHHHHhCCCceEEEEE
Confidence            999999998             677888999999999999999999874       3445566666665565 5888999


Q ss_pred             ccCCCCcH----HHHHHHHHHHHHHHhcc--CCCCCcEEeccCCCCChHH
Q 029158          141 KTDTVFPI----DVARRAMQIEESLKANN--SLVQPVMMVSSKSGAGIRS  184 (198)
Q Consensus       141 K~Dl~~~~----~~~~~~~~~~~~~~~~~--~~~~~v~~~Sa~~~~gi~~  184 (198)
                      |+|+..+.    ..+.....+.+.+....  ....+++++||..|.|+.+
T Consensus       150 K~D~~~~~~~~~~~~~v~~~i~~~~~~~~~~~~~i~~IPISA~~G~NV~~  199 (224)
T d1jnya3         150 KMDLTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITH  199 (224)
T ss_dssp             CGGGSSSTTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTB
T ss_pred             cccCCCccccHHHHHHHHHHHHhHHHhcCCCcccCeEEEEEccCCCCccc
Confidence            99997532    23334444444444332  2346789999999998854

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.80  E-value=8.2e-19  Score=124.59  Aligned_cols=113  Identities=22%  Similarity=0.242  Sum_probs=73.1

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEE---EeCCceEEEeCCCCccccchhHHHHHHHHHHHHH
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF---KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY   97 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~---~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~   97 (198)
                      .|+|+++|++|+|||||+|+|++++ ..     +.+|.+....   ..+..+.++||||.....         ......+
T Consensus         3 ~p~V~lvG~~n~GKTSLln~l~~~~-~~-----~~tt~~~~~~~~~~~~~~~~l~D~~g~~~~~---------~~~~~~~   67 (209)
T d1nrjb_           3 QPSIIIAGPQNSGKTSLLTLLTTDS-VR-----PTVVSQEPLSAADYDGSGVTLVDFPGHVKLR---------YKLSDYL   67 (209)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHSS-CC-----CBCCCSSCEEETTGGGSSCEEEECCCCGGGT---------HHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCC-CC-----CeEEecceEEEEEeCCeEEEEEecccccchh---------hHHHHHH
Confidence            5799999999999999999999874 21     2334332222   236789999999974321         1112223


Q ss_pred             HhcccccceEEEEEeCCCCCCcCc--HHHH-------HHHHhhCCcEEEEEeccCCCCcH
Q 029158           98 VSTRVSLKRVCLLIDTKWGVKPRD--HELI-------SLMERSQTKYQVVLTKTDTVFPI  148 (198)
Q Consensus        98 ~~~~~~~d~vi~v~d~~~~~~~~~--~~~~-------~~~~~~~~p~iiv~nK~Dl~~~~  148 (198)
                      ......++.+++++|+........  .+++       ......+.|+++|+||+|+....
T Consensus        68 ~~~~~~~~~~i~~vd~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~piiiv~NK~D~~~~~  127 (209)
T d1nrjb_          68 KTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTAR  127 (209)
T ss_dssp             HHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCC
T ss_pred             HHHhhhccccceEEEEecccccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEeecccccC
Confidence            333444788999999876433222  1111       12223479999999999997654

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=99.75  E-value=6.9e-18  Score=122.39  Aligned_cols=120  Identities=20%  Similarity=0.190  Sum_probs=73.5

Q ss_pred             CceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHH-----HHHhhCCcEEEEEec
Q 029158           67 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELIS-----LMERSQTKYQVVLTK  141 (198)
Q Consensus        67 ~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~-----~~~~~~~p~iiv~nK  141 (198)
                      ..+.++|+||+.+....       ......+.. ....+.+++++|+..+..........     .......|.++|+||
T Consensus        95 ~~~~~id~~g~~~~~~~-------~~~~~~~~~-~~~~~~~v~vvd~~~~~~~~~~~~~~l~~~~~~~~~~~~~ivvinK  166 (244)
T d1yrba1          95 NDYVLIDTPGQMETFLF-------HEFGVRLME-NLPYPLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNK  166 (244)
T ss_dssp             CSEEEEECCSSHHHHHH-------SHHHHHHHH-TSSSCEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECC
T ss_pred             cceeeeccccchhHHHH-------HHHHHHHHh-hccCceEEEEeccccccCchhHhhHHHHHHHHHHHhCCCceeeeec
Confidence            36999999998442100       111111222 23356789999998755544332211     122347899999999


Q ss_pred             cCCCCcHHHHHHHHHHH------HHHH-----------------hccCCCCCcEEeccCCCCChHHHHHHHHHhhc
Q 029158          142 TDTVFPIDVARRAMQIE------ESLK-----------------ANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR  194 (198)
Q Consensus       142 ~Dl~~~~~~~~~~~~~~------~~~~-----------------~~~~~~~~v~~~Sa~~~~gi~~l~~~i~~~~~  194 (198)
                      +|+....+........+      ....                 .......+++++||++|+|+++|+++|.+++.
T Consensus       167 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vSa~~geGi~~L~~~l~e~~~  242 (244)
T d1yrba1         167 VDLLSEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYC  242 (244)
T ss_dssp             GGGCCHHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             cccccHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHHhc
Confidence            99998765433221111      1110                 01123578999999999999999999998753

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.73  E-value=3.6e-17  Score=119.63  Aligned_cols=124  Identities=20%  Similarity=0.175  Sum_probs=85.8

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEE---EEeCCceEEEeCCCCccccchhHHHHHHHHHHHH
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF---FKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE   96 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~---~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~   96 (198)
                      ...+|+++|.+|+|||||+|+|++. ....++..+++|+....   ...+.++.++||||+.+......   ........
T Consensus        31 ~~l~I~LvG~tg~GKSSliN~ilg~-~~~~vs~~~~~T~~~~~~~~~~~g~~i~viDTPGl~~~~~~~~---~~~~~i~~  106 (257)
T d1h65a_          31 NSLTILVMGKGGVGKSSTVNSIIGE-RVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYIND---MALNIIKS  106 (257)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHTS-CCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECH---HHHHHHHH
T ss_pred             CCcEEEEECCCCCcHHHHHHHHhCC-CceeecCCCCcceeEEEEEEEeccEEEEEEeeecccCCcchHH---HHHHHHHH
Confidence            4578999999999999999999998 55666677777765432   23367899999999976533221   11112222


Q ss_pred             HHhcccccceEEEEEeCCC-CCCcCcHHHHHHHHhh-----CCcEEEEEeccCCCCcH
Q 029158           97 YVSTRVSLKRVCLLIDTKW-GVKPRDHELISLMERS-----QTKYQVVLTKTDTVFPI  148 (198)
Q Consensus        97 ~~~~~~~~d~vi~v~d~~~-~~~~~~~~~~~~~~~~-----~~p~iiv~nK~Dl~~~~  148 (198)
                      +. .....++++||++... .+...+...++.+...     ..++|+|+||+|...+.
T Consensus       107 ~~-~~~~~~~il~v~~~~~~r~~~~~~~~l~~l~~~fg~~~~~~~ivv~t~~D~~~~~  163 (257)
T d1h65a_         107 FL-LDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPD  163 (257)
T ss_dssp             HT-TTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGG
T ss_pred             HH-hcCCCCeEEEEEECCCCCCCHHHHHHHHHHHHHcchhhhhCEEEEEECcccCCcC
Confidence            22 2345788999988765 3566666666665532     36899999999998653

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=99.70  E-value=1.1e-16  Score=120.39  Aligned_cols=155  Identities=19%  Similarity=0.159  Sum_probs=96.6

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcC-----ccceeecCCCCceeEE-------------------EEEE----------
Q 029158           19 PDLPEIAFAGRSNVGKSSMLNALTRQ-----WGVVRTSDKPGLTQTI-------------------NFFK----------   64 (198)
Q Consensus        19 ~~~~~v~~vG~~~~GKSsli~~l~~~-----~~~~~~~~~~~~t~~~-------------------~~~~----------   64 (198)
                      .+.++|.++|+||+|||||+++|...     .+++.....|.+....                   ....          
T Consensus        52 ~~~~~IgitG~pGaGKSTLi~~l~~~~~~~g~~vavlavDpss~~~ggailgdr~rm~~~~~~~~~~ir~~~~~g~lgg~  131 (327)
T d2p67a1          52 GNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGGA  131 (327)
T ss_dssp             SCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEECC-----CH
T ss_pred             CCceEEEeeCCCCCCHHHHHHHHHHHHHhcCCceeeecCCCceeeeccccccchhHHHHhcccccccccccccccccccc
Confidence            35788999999999999999999732     1344333333322110                   0000          


Q ss_pred             -------------eCCceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCc--HHHHHHHH
Q 029158           65 -------------LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD--HELISLME  129 (198)
Q Consensus        65 -------------~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~--~~~~~~~~  129 (198)
                                   .+..+.+++|.|.+..          +.   .+   ...+|.+++|+++..|-..+.  .-+++   
T Consensus       132 ~~~~~~~~~~~~~~g~d~iliEtvG~gq~----------e~---~i---~~~aD~~l~v~~P~~Gd~iq~~k~gi~e---  192 (327)
T d2p67a1         132 SQRARELMLLCEAAGYDVVIVETVGVGQS----------ET---EV---ARMVDCFISLQIAGGGDDLQGIKKGLME---  192 (327)
T ss_dssp             HHHHHHHHHHHHHTTCSEEEEEEECCTTH----------HH---HH---HTTCSEEEEEECC------CCCCHHHHH---
T ss_pred             hhhhhHHHHHHHhcCCCeEEEeecccccc----------ch---hh---hhccceEEEEecCCCchhhhhhchhhhc---
Confidence                         0236788888886542          10   11   123899999988766422222  22222   


Q ss_pred             hhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhcc----CCCCCcEEeccCCCCChHHHHHHHHHhhcc
Q 029158          130 RSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANN----SLVQPVMMVSSKSGAGIRSLRTVLSKIARF  195 (198)
Q Consensus       130 ~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~----~~~~~v~~~Sa~~~~gi~~l~~~i~~~~~~  195 (198)
                         .+-++|+||+|+............++..+....    ....|++.+||.+|+|+++|++.|.++..+
T Consensus       193 ---~aDi~VvNKaD~~~~~~~~~~~~~~~~al~~~~~~~~~w~p~V~~~SA~~g~Gi~eL~~~I~~~~~~  259 (327)
T d2p67a1         193 ---VADLIVINKDDGDNHTNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKTA  259 (327)
T ss_dssp             ---HCSEEEECCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHHH
T ss_pred             ---cccEEEEEeecccchHHHHHHHHHHHHHhhhcccCCCCCcceeEEEEeeCCCCHHHHHHHHHHHHHH
Confidence               344999999999987766666666666555332    224679999999999999999999887765

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.69  E-value=1.1e-17  Score=126.24  Aligned_cols=113  Identities=19%  Similarity=0.292  Sum_probs=80.0

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCccc--------------eeecCCCCceeE---EEEEEe----------------C
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQWGV--------------VRTSDKPGLTQT---INFFKL----------------G   66 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~--------------~~~~~~~~~t~~---~~~~~~----------------~   66 (198)
                      ..++|+++|..++|||||+.+|+.....              .......+.|..   ..+...                .
T Consensus        16 ~IRNI~iiGhvd~GKTTL~d~Ll~~~g~i~~~~~~~~~~~D~~~~E~eRgiTi~~~~~~l~~~~~~~~~~~~~~~~~~~~   95 (341)
T d1n0ua2          16 NVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNS   95 (341)
T ss_dssp             GEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSE
T ss_pred             cCcEEEEEeCCCCcHHHHHHHHHHHCCCccccccccccccccchhHHhcCceEeCCEEEEEeccCcccccchhccccccc
Confidence            4567999999999999999999732100              000111222221   112111                1


Q ss_pred             CceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCC
Q 029158           67 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV  145 (198)
Q Consensus        67 ~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~  145 (198)
                      ..+.++||||+.+             +..+.......+|++++|+|+.+|+...+..+++++...++|+++++||+|..
T Consensus        96 ~~inliDtPGh~d-------------F~~ev~~al~~~D~allVVda~eGv~~qT~~~~~~a~~~~~p~i~viNKiDr~  161 (341)
T d1n0ua2          96 FLINLIDSPGHVD-------------FSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGERIKPVVVINKVDRA  161 (341)
T ss_dssp             EEEEEECCCCCCS-------------SCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHHTTCEEEEEEECHHHH
T ss_pred             eEEEEEcCCCcHH-------------HHHHHHHHHhhcCceEEEEecccCcchhHHHHHHHHHHcCCCeEEEEECcccc
Confidence            3489999999843             33445555566999999999999999999999999999999999999999974

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.68  E-value=2e-16  Score=111.26  Aligned_cols=153  Identities=16%  Similarity=0.122  Sum_probs=93.4

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEE---EEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHHH
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---NFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY   97 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~---~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~   97 (198)
                      ..+|+++|.+|+|||||++++...   .   .+.+ |...   .+......+.+||++|...             .....
T Consensus         2 ~iKivllG~~~vGKTsll~r~~f~---~---~~~p-TiG~~~~~~~~~~~~~~~~D~~gq~~-------------~~~~~   61 (200)
T d1zcba2           2 LVKILLLGAGESGKSTFLKQMRII---H---GQDP-TKGIHEYDFEIKNVPFKMVDVGGQRS-------------ERKRW   61 (200)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHH---H---SCCC-CSSEEEEEEEETTEEEEEEEECC--------------------C
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcC---C---CCCC-eeeeEEEEEeeeeeeeeeecccceee-------------ecccc
Confidence            468999999999999999999422   1   1222 2222   2333467899999999521             11122


Q ss_pred             HhcccccceEEEEEeCCCCCCcC--------cHH---HHHHH-H---hhCCcEEEEEeccCCCCc---------------
Q 029158           98 VSTRVSLKRVCLLIDTKWGVKPR--------DHE---LISLM-E---RSQTKYQVVLTKTDTVFP---------------  147 (198)
Q Consensus        98 ~~~~~~~d~vi~v~d~~~~~~~~--------~~~---~~~~~-~---~~~~p~iiv~nK~Dl~~~---------------  147 (198)
                      ......++++++++|.+......        ..+   .+..+ .   ..+.|+++++||+|+...               
T Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~f~~~~  141 (200)
T d1zcba2          62 FECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFE  141 (200)
T ss_dssp             TTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCC
T ss_pred             cccccccceeEEEEEcCCcceeeeecccchhhhHHHHHHHHHhhChhhcCceEEEEeccchhhhhhccccHHHHhCcccc
Confidence            22334478899999987643211        112   22222 2   237899999999997431               


Q ss_pred             ---HHHHHHHHHHHHHHHhccC----CCCCcEEeccCCCCChHHHHHHHHHhh
Q 029158          148 ---IDVARRAMQIEESLKANNS----LVQPVMMVSSKSGAGIRSLRTVLSKIA  193 (198)
Q Consensus       148 ---~~~~~~~~~~~~~~~~~~~----~~~~v~~~Sa~~~~gi~~l~~~i~~~~  193 (198)
                         .+.+...+.+.+.+.....    ..+-++++||++++|++++++.+.+.+
T Consensus       142 ~~~~~~~~~~~~~~~~f~~~~~~~~~~~iy~~~TsA~d~~ni~~vf~~v~d~i  194 (200)
T d1zcba2         142 GDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTI  194 (200)
T ss_dssp             SCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCcchHHHHHHHHHHHHHHhccCCCCCceEEEEeeeeCcHHHHHHHHHHHHHH
Confidence               2234444555555543221    123356799999999999999887653

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=99.65  E-value=9.2e-16  Score=115.15  Aligned_cols=157  Identities=20%  Similarity=0.193  Sum_probs=96.4

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcC-----ccceeecCCCCceeE-------------------EEEEE----------
Q 029158           19 PDLPEIAFAGRSNVGKSSMLNALTRQ-----WGVVRTSDKPGLTQT-------------------INFFK----------   64 (198)
Q Consensus        19 ~~~~~v~~vG~~~~GKSsli~~l~~~-----~~~~~~~~~~~~t~~-------------------~~~~~----------   64 (198)
                      ...++|.+.|+||+|||||+++|...     .+++.....+.++..                   .-+..          
T Consensus        49 ~~~~~igitG~pGaGKSTli~~l~~~~~~~g~~vaViavDpss~~~gg~llgdr~rm~~~~~~~~~~ir~~~~~~~~gg~  128 (323)
T d2qm8a1          49 GRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLGGV  128 (323)
T ss_dssp             CCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHHHH
T ss_pred             CCceEEeeeCCCCCCHHHHHHHHHHHHhhcCCceeeeecccccHHHHhccccchhhHHHHhcccceeeccccccccccch
Confidence            35678999999999999999998842     133333333222110                   00111          


Q ss_pred             -------------eCCceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhh
Q 029158           65 -------------LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERS  131 (198)
Q Consensus        65 -------------~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~  131 (198)
                                   .+..+.|++|.|.+.+          +....      ..+|..++|+.+..|-.-+..+ ...+   
T Consensus       129 ~~~~~~~i~~~~~~g~d~iiiETVG~gq~----------e~~~~------~~~D~~v~v~~p~~GD~iQ~~k-~gil---  188 (323)
T d2qm8a1         129 AAKTRETMLLCEAAGFDVILVETVGVGQS----------ETAVA------DLTDFFLVLMLPGAGDELQGIK-KGIF---  188 (323)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEEEECSSSSC----------HHHHH------TTSSEEEEEECSCC------CC-TTHH---
T ss_pred             hHHHHHHHHhhccCCCCeEEEeehhhhhh----------hhhhh------cccceEEEEeeccchhhhhhhh-hhHh---
Confidence                         1357899999997664          11111      1289999999887652111100 0111   


Q ss_pred             CCcEEEEEeccCCCCcHHHHHHH-HHHHHHHHhcc----CCCCCcEEeccCCCCChHHHHHHHHHhhcc
Q 029158          132 QTKYQVVLTKTDTVFPIDVARRA-MQIEESLKANN----SLVQPVMMVSSKSGAGIRSLRTVLSKIARF  195 (198)
Q Consensus       132 ~~p~iiv~nK~Dl~~~~~~~~~~-~~~~~~~~~~~----~~~~~v~~~Sa~~~~gi~~l~~~i~~~~~~  195 (198)
                      ..+-++|+||+|+.......... ..++..+....    ....|++.+||++++|+++++++|.++..+
T Consensus       189 E~aDi~vvNKaD~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~V~~~Sa~~g~Gi~el~~~I~~~~~~  257 (323)
T d2qm8a1         189 ELADMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRSK  257 (323)
T ss_dssp             HHCSEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHHH
T ss_pred             hhhheeeEeccccccchHHHHHHHHHHHHHhhcccccccCCCCceEEEEecCCCCHHHHHHHHHHHHHH
Confidence            23449999999998776544333 33334333221    235789999999999999999999887654

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.64  E-value=1.2e-16  Score=111.94  Aligned_cols=154  Identities=12%  Similarity=0.083  Sum_probs=94.2

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHHHHhc
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVST  100 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~  100 (198)
                      ..+|+++|..|+|||||+++|.... ..    ..+ .....+......+.+|||+|....          ..+...|+. 
T Consensus         2 e~KivllG~~~vGKTsl~~r~~~~~-~~----t~~-~~~~~~~~~~~~~~i~D~~Gq~~~----------~~~~~~~~~-   64 (195)
T d1svsa1           2 EVKLLLLGAGESGKSTIVKQMKIIH-EA----GTG-IVETHFTFKDLHFKMFDVGGQRSE----------RKKWIHCFE-   64 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHH-SC----CCS-EEEEEEEETTEEEEEEEECCSGGG----------GGGGGGGCT-
T ss_pred             ceEEEEECCCCCCHHHHHHHHhhCC-CC----Ccc-EEEEEEEeeeeeeeeecccccccc----------ccchhhccc-
Confidence            3589999999999999999998652 11    111 111223334678999999996321          222223333 


Q ss_pred             ccccceEEEEEeCCCCCCcCc--------HH----HHHHHH---hhCCcEEEEEeccCCCC-----------------cH
Q 029158          101 RVSLKRVCLLIDTKWGVKPRD--------HE----LISLME---RSQTKYQVVLTKTDTVF-----------------PI  148 (198)
Q Consensus       101 ~~~~d~vi~v~d~~~~~~~~~--------~~----~~~~~~---~~~~p~iiv~nK~Dl~~-----------------~~  148 (198)
                        .++++++++|.++......        .+    +...+.   ..+.|+++++||+|+..                 ..
T Consensus        65 --~~~~~i~v~d~~~~~~~~~~~~~~~~~~e~~~~~~~i~~~~~~~~~~~~lv~Nk~d~~~~~~~~~~~~~~~~~~~~~~  142 (195)
T d1svsa1          65 --GVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSN  142 (195)
T ss_dssp             --TCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCS
T ss_pred             --CCceeeeEEeecccchHHHHhhhhHHHHHHHHHHHHHhcccccCCCCEEEEeccchhhhhhccchHHHHHhhhhcCcc
Confidence              3899999999866221110        11    112222   22589999999998632                 11


Q ss_pred             HHHHHHHHHHHHHHhcc----CCCCCcEEeccCCCCChHHHHHHHHHhh
Q 029158          149 DVARRAMQIEESLKANN----SLVQPVMMVSSKSGAGIRSLRTVLSKIA  193 (198)
Q Consensus       149 ~~~~~~~~~~~~~~~~~----~~~~~v~~~Sa~~~~gi~~l~~~i~~~~  193 (198)
                      ...+....+...+....    ...+.++++||++++|++++|+.+.+.+
T Consensus       143 ~~~~~~~~~~~~f~~~~~~~~~~~~~~~~tSA~~~~nv~~~F~~v~~~i  191 (195)
T d1svsa1         143 TYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVI  191 (195)
T ss_dssp             SHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHhcccCCCcceeEEEEeECCHhHHHHHHHHHHHH
Confidence            22333334444443322    1234567899999999999999988754

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.64  E-value=6.2e-16  Score=108.55  Aligned_cols=154  Identities=14%  Similarity=0.081  Sum_probs=95.4

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEE---EEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHHH
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---NFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY   97 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~---~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~   97 (198)
                      ..+|+++|..|+|||||++++.... .   . +. +|...   .+......+.+||++|....          ......+
T Consensus         2 e~Kiv~lG~~~vGKTsll~r~~~~~-~---~-~~-pTiG~~~~~~~~~~~~~~~~d~~g~~~~----------~~~~~~~   65 (200)
T d2bcjq2           2 ELKLLLLGTGESGKSTFIKQMRIIH-G---S-GV-PTTGIIEYPFDLQSVIFRMVDVGGQRSE----------RRKWIHC   65 (200)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHHT-S---S-CC-CCCSCEEEEEECSSCEEEEEECCCSTTG----------GGGGGGG
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCC-C---C-CC-ceeeEEEEEEeccceeeeeccccccccc----------ccccccc
Confidence            3589999999999999999998763 1   2 21 23322   23334678999999996321          1112222


Q ss_pred             HhcccccceEEEEEeCCCCCCc--------Cc---H-HHHHHHHh---hCCcEEEEEeccCCCCcH--------------
Q 029158           98 VSTRVSLKRVCLLIDTKWGVKP--------RD---H-ELISLMER---SQTKYQVVLTKTDTVFPI--------------  148 (198)
Q Consensus        98 ~~~~~~~d~vi~v~d~~~~~~~--------~~---~-~~~~~~~~---~~~p~iiv~nK~Dl~~~~--------------  148 (198)
                      +   ..++.+++++|.++....        ..   . .+...+..   .+.|+++++||+|+....              
T Consensus        66 ~---~~~~~~i~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~v~NK~Dl~~~~~~~~~~~~~~~~~~  142 (200)
T d2bcjq2          66 F---ENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYD  142 (200)
T ss_dssp             C---SSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHHCGGGSSSEEEEEEECHHHHHHHTTTSCHHHHSTTCC
T ss_pred             c---cccceeeEeeeccchhhhhhhhccccchHHHHHHHHHHHhhhhccCccEEEecchhhhhhhcccchHHHHhccccc
Confidence            2   348899999998763211        01   1 22333332   268999999999974321              


Q ss_pred             ----HHHHHHHHHHHHHHhcc---CCCCCcEEeccCCCCChHHHHHHHHHhh
Q 029158          149 ----DVARRAMQIEESLKANN---SLVQPVMMVSSKSGAGIRSLRTVLSKIA  193 (198)
Q Consensus       149 ----~~~~~~~~~~~~~~~~~---~~~~~v~~~Sa~~~~gi~~l~~~i~~~~  193 (198)
                          +.......+...+....   ...+.++++||++|+|++++|+.+.+.+
T Consensus       143 ~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~tSAk~~~ni~~vF~~i~~~I  194 (200)
T d2bcjq2         143 GPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTI  194 (200)
T ss_dssp             SCSSCHHHHHHHHHHHHHTTCSCTTSCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCchhHHHHHHHHHHHHHHhcccCCCceEEEEeEEEcCHhHHHHHHHHHHHH
Confidence                12222333333333221   2234478899999999999999987765

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.59  E-value=2.4e-15  Score=113.28  Aligned_cols=85  Identities=22%  Similarity=0.199  Sum_probs=46.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEE---------------------------eCCceEEEeCC
Q 029158           23 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---------------------------LGTKLCLVDLP   75 (198)
Q Consensus        23 ~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~---------------------------~~~~~~iiDtp   75 (198)
                      +|+++|.|++|||||+|+|++.+  ..++++|+||.+....-                           .+.++.++|+|
T Consensus         2 ~v~lvG~pn~GKStlfn~lt~~~--~~v~nypftT~~pn~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~p   79 (319)
T d1wxqa1           2 EIGVVGKPNVGKSTFFSAATLVD--VEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVA   79 (319)
T ss_dssp             EEEEEECTTSSHHHHHHHHHC----------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC
T ss_pred             cEeEECCCCCCHHHHHHHHHCCC--CchhcCCCCcccCccceeeCCCCchhhhhhhccCccccccccccccccEEEEECC
Confidence            69999999999999999999985  78899999997532110                           11358999999


Q ss_pred             CCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCC
Q 029158           76 GYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKW  115 (198)
Q Consensus        76 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~  115 (198)
                      |+.......      ..+..+++.....+|++++|+|+..
T Consensus        80 Gli~ga~~g------~~~~~~~l~~i~~~d~ii~VVd~~~  113 (319)
T d1wxqa1          80 GLVPGAHEG------RGLGNKFLDDLRMASALIHVVDATG  113 (319)
T ss_dssp             ---------------------CCCSSTTCSEEEEEEETTC
T ss_pred             Ccccchhcc------cchHHHHHHhhccceEEEEEecccc
Confidence            985543221      4456678888889999999999864

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.58  E-value=1.3e-14  Score=108.15  Aligned_cols=124  Identities=20%  Similarity=0.278  Sum_probs=81.9

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCcee-EE--EEEE--------------------------------
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQ-TI--NFFK--------------------------------   64 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~-~~--~~~~--------------------------------   64 (198)
                      ..|+|+++|..++|||||+|+|++.. +...+..+ +|. ..  .+..                                
T Consensus        25 ~~P~ivvvG~~SsGKSsliNaLlg~~-~lP~~~~~-~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (299)
T d2akab1          25 DLPQIAVVGGQSAGKSSVLENFVGRD-FLPRGSGI-VTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDR  102 (299)
T ss_dssp             CCCEEEEEEBTTSCHHHHHHHHHTSC-CSCCCSSC-SCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHH
T ss_pred             CCCeEEEEcCCCCCHHHHHHHHhCCC-cCCCCCCc-cccCCEEEEEeccccceeEEEeCCCCeeCCHHHHHHHHHHHHHH
Confidence            46799999999999999999999973 32233322 221 10  0000                                


Q ss_pred             --------------------eCCceEEEeCCCCccccchh---HHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCc
Q 029158           65 --------------------LGTKLCLVDLPGYGFAYAKE---EVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD  121 (198)
Q Consensus        65 --------------------~~~~~~iiDtpG~~~~~~~~---~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~  121 (198)
                                          .-.++.++||||++.....+   ........+...|....  .+++++|.++..++....
T Consensus       103 ~~~~~~~~~~~~i~l~~~~p~~~~l~liD~PG~~~~~~~~~~~~~~~~i~~~~~~y~~~~--~~~il~v~~a~~~~~~~~  180 (299)
T d2akab1         103 VTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKE--NCLILAVSPANSDLANSD  180 (299)
T ss_dssp             HCSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTST--TEEEEEEEESSSCGGGCH
T ss_pred             hhCCCcCcCCccEEEEEcCCCCCCeeEEccCCccccccCCcchhHHHHHHHHHHHHhcCc--cceeeeecccccchhhhH
Confidence                                12368999999987643222   23344456666666552  345677888877666555


Q ss_pred             -HHHHHHHHhhCCcEEEEEeccCCCCc
Q 029158          122 -HELISLMERSQTKYQVVLTKTDTVFP  147 (198)
Q Consensus       122 -~~~~~~~~~~~~p~iiv~nK~Dl~~~  147 (198)
                       ..+.+.+.....++++|+||+|....
T Consensus       181 ~~~~~~~~~~~~~r~i~Vltk~D~~~~  207 (299)
T d2akab1         181 ALKIAKEVDPQGQRTIGVITKLDLMDE  207 (299)
T ss_dssp             HHHHHHHHCTTCSSEEEEEECGGGSCT
T ss_pred             HHHHHHHhCcCCCceeeEEeccccccc
Confidence             45567776667899999999999865

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.55  E-value=6.5e-15  Score=105.23  Aligned_cols=153  Identities=12%  Similarity=0.107  Sum_probs=90.4

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHHHHhc
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVST  100 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~  100 (198)
                      ..+|+++|..|+|||||++++...+.    .+..|... ..+...+..+.++|++|....          ..   .+...
T Consensus         6 ~~KilllG~~~vGKTsll~~~~~~~~----~pTiG~~~-~~~~~~~~~~~~~D~~Gq~~~----------r~---~w~~~   67 (221)
T d1azta2           6 THRLLLLGAGESGKSTIVKQMRILHV----VLTSGIFE-TKFQVDKVNFHMFDVGGQRDE----------RR---KWIQC   67 (221)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHHHHC----CCCCSCEE-EEEEETTEEEEEEECCCSTTT----------TT---GGGGG
T ss_pred             cCEEEEECCCCCCHHHHHHHHhcCCc----CCCCCeEE-EEEEECcEEEEEEecCcccee----------cc---chhhh
Confidence            35899999999999999999976531    12222111 123334678999999996321          11   11222


Q ss_pred             ccccceEEEEEeCCCCCC--------cCcHHHH---HH-HHh---hCCcEEEEEeccCCCCcH-----------------
Q 029158          101 RVSLKRVCLLIDTKWGVK--------PRDHELI---SL-MER---SQTKYQVVLTKTDTVFPI-----------------  148 (198)
Q Consensus       101 ~~~~d~vi~v~d~~~~~~--------~~~~~~~---~~-~~~---~~~p~iiv~nK~Dl~~~~-----------------  148 (198)
                      ...++++++++|.+....        ....+.+   +. +..   .++|+++++||+|+....                 
T Consensus        68 ~~~~~~ii~v~d~s~~~~~~~~~~~~~r~~e~~~~~~~il~~~~~~~~~iil~~NK~Dl~~~k~~~~~~~~~~~f~~~~~  147 (221)
T d1azta2          68 FNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFAR  147 (221)
T ss_dssp             CTTCSEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHHHHHHHCSSCHHHHCGGGGG
T ss_pred             cccccceEEEEEccccccccccccchHHHHHHHHHHHHHhcChhhCCCcEEEEechhhhhhhhhccCcccHHHhCccccc
Confidence            234889999999876211        1111222   22 221   268999999999985431                 


Q ss_pred             ---------------HHHHHHHHHHHHHHhcc----C--CCCCcEEeccCCCCChHHHHHHHHH
Q 029158          149 ---------------DVARRAMQIEESLKANN----S--LVQPVMMVSSKSGAGIRSLRTVLSK  191 (198)
Q Consensus       149 ---------------~~~~~~~~~~~~~~~~~----~--~~~~v~~~Sa~~~~gi~~l~~~i~~  191 (198)
                                     ........+...+....    .  ..+-++++||.+..+++.+++.+.+
T Consensus       148 ~~~~~~~~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~y~h~T~A~Dt~ni~~vf~~v~d  211 (221)
T d1azta2         148 YTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRD  211 (221)
T ss_dssp             CCCCTTCCCCTTCCHHHHHHHHHHHHHHHHHHTSSCTTSCCEEEEECCTTCHHHHHHHHHTTHH
T ss_pred             cCCcccccccCCCchhHHHHHHHHHHHHHHHhccCCCCCCceeeeecceeccHHHHHHHHHHHH
Confidence                           12223333433333211    1  1123568999999999999987654

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=99.54  E-value=2.9e-14  Score=106.63  Aligned_cols=78  Identities=19%  Similarity=0.270  Sum_probs=49.0

Q ss_pred             CceEEEeCCCCccccchhH---HHHHHHHHHHHHHhcccccce-EEEEEeCCCCCCcCc-HHHHHHHHhhCCcEEEEEec
Q 029158           67 TKLCLVDLPGYGFAYAKEE---VKDAWEELVKEYVSTRVSLKR-VCLLIDTKWGVKPRD-HELISLMERSQTKYQVVLTK  141 (198)
Q Consensus        67 ~~~~iiDtpG~~~~~~~~~---~~~~~~~~~~~~~~~~~~~d~-vi~v~d~~~~~~~~~-~~~~~~~~~~~~p~iiv~nK  141 (198)
                      .++.++||||+......+.   .......+...|+..   ++. ++++.++..++.... ..+.+.+.....++++|+||
T Consensus       131 ~~l~iiDtPG~~~~~~~~~~~~~~~~~~~~~~~yi~~---~~~~il~v~~~~~~~~~~~~~~~~~~~~~~~~r~i~Vitk  207 (306)
T d1jwyb_         131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKK---QNAIIVAVTPANTDLANSDALQLAKEVDPEGKRTIGVITK  207 (306)
T ss_dssp             CSEEEEECCCCC---------CSHHHHHHHHHHHHHS---TTEEEEEEEESSSCSTTCSHHHHHHHHCSSCSSEEEEEEC
T ss_pred             CCceEecCCCccccccCCcchhHHHHHHHHHHHHHhC---CCceeEEeecccccccccHHHHHHHHhCcCCCeEEEEEec
Confidence            4789999999976433221   233445556666655   555 555667766555444 45667676667899999999


Q ss_pred             cCCCCc
Q 029158          142 TDTVFP  147 (198)
Q Consensus       142 ~Dl~~~  147 (198)
                      +|....
T Consensus       208 ~D~~~~  213 (306)
T d1jwyb_         208 LDLMDK  213 (306)
T ss_dssp             TTSSCS
T ss_pred             cccccc
Confidence            998754

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.52  E-value=3.1e-15  Score=111.45  Aligned_cols=89  Identities=17%  Similarity=0.177  Sum_probs=66.9

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEE--Ee------------------CCceEEEeCCCCcc
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF--KL------------------GTKLCLVDLPGYGF   79 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~--~~------------------~~~~~iiDtpG~~~   79 (198)
                      .-.+|.++|.|++|||||+|++++. ..+.+.+||+||.+....  ..                  ...+.++|.||+..
T Consensus         9 ~~~kiGivG~Pn~GKSTlfnalT~~-~~~~~anypftTi~pn~g~v~v~d~r~~~l~~~~~~~~~~~~~i~~~DvaGLv~   87 (296)
T d1ni3a1           9 NNLKTGIVGMPNVGKSTFFRAITKS-VLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK   87 (296)
T ss_dssp             SCCEEEEEECSSSSHHHHHHHHHHS-TTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHCC-CCCCcCCCCccCccCCeEEEeccccchhhhhhcccCCceecccceeeecccccc
Confidence            3468999999999999999999986 445688999999764322  11                  23689999999866


Q ss_pred             ccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCC
Q 029158           80 AYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKW  115 (198)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~  115 (198)
                      .....      ..+..+++...+.+|++++|+|+..
T Consensus        88 gA~~g------~GLGn~fL~~ir~~d~lihVV~~f~  117 (296)
T d1ni3a1          88 GASTG------VGLGNAFLSHVRAVDAIYQVVRAFD  117 (296)
T ss_dssp             CCCSS------SSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             ccccc------cccHHHHHHHhhccceeEEEEeccC
Confidence            54332      2233467777788999999999865

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=99.38  E-value=8.6e-14  Score=102.64  Aligned_cols=87  Identities=23%  Similarity=0.222  Sum_probs=61.0

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEE--e------------------CCceEEEeCCCCccc
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK--L------------------GTKLCLVDLPGYGFA   80 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~--~------------------~~~~~iiDtpG~~~~   80 (198)
                      ..+|.+||.|++|||||+|+|++..  ....+||.||.+.....  .                  ...+.++|.||+...
T Consensus         2 ~~~~GivG~Pn~GKSTlf~~lt~~~--~~~~~ypf~ti~pn~gvv~v~d~r~~~l~~~~~~~~~~~a~i~~~Di~GLi~g   79 (278)
T d1jala1           2 GFKCGIVGLPNVGKSTLFNALTKAG--IEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAG   79 (278)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHTC--------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTT
T ss_pred             CceEEEECCCCCCHHHHHHHHHCCC--CccccCCCCCCCCceEEEecccHhHHHHHHhcCCCceeeeeEEEEEccccCCC
Confidence            4689999999999999999999874  67889999997643211  1                  245889999998654


Q ss_pred             cchhHHHHHHHHHHHHHHhcccccceEEEEEeCCC
Q 029158           81 YAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKW  115 (198)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~  115 (198)
                      .+..      ..+..+|+++.+.+|++++|+|+..
T Consensus        80 a~~g------~Glg~~FL~~ir~~d~LihVVr~f~  108 (278)
T d1jala1          80 ASKG------EGLGNKFLANIRETDAIGHVVRCFE  108 (278)
T ss_dssp             HHHH------GGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred             cccC------CCccHHHHHHHHhccceEEEeeccC
Confidence            3222      2234467777888999999999854

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=99.30  E-value=1.2e-12  Score=96.19  Aligned_cols=62  Identities=34%  Similarity=0.650  Sum_probs=43.6

Q ss_pred             CCCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEeCCceEEEeCCCCccc
Q 029158           18 APDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFA   80 (198)
Q Consensus        18 ~~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~iiDtpG~~~~   80 (198)
                      .....+|+++|.||+|||||+|+|.+. ....+++.|++|++.+....+.++.++||||+...
T Consensus       109 ~~~~~~v~vvG~PNvGKSsliN~L~~~-~~~~~~~~pG~Tr~~~~i~~~~~~~l~DTPGi~~p  170 (273)
T d1puja_         109 KPRAIRALIIGIPNVGKSTLINRLAKK-NIAKTGDRPGITTSQQWVKVGKELELLDTPGILWP  170 (273)
T ss_dssp             CCCCEEEEEEESTTSSHHHHHHHHHTS-CCC------------CCEEETTTEEEEECCCCCCS
T ss_pred             CCCceEEEEEecCccchhhhhhhhhcc-ceEEECCcccccccceEEECCCCeEEecCCCcccc
Confidence            345678999999999999999999998 67889999999999888788899999999998543

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=99.02  E-value=1.1e-09  Score=76.56  Aligned_cols=154  Identities=17%  Similarity=0.188  Sum_probs=75.0

Q ss_pred             cCCCCCCCCCeEEEEcCCCCCHHHHHHHHhcCc-----cceeecCCCC---cee---------EEEEE------------
Q 029158           13 SSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQW-----GVVRTSDKPG---LTQ---------TINFF------------   63 (198)
Q Consensus        13 ~~~~~~~~~~~v~~vG~~~~GKSsli~~l~~~~-----~~~~~~~~~~---~t~---------~~~~~------------   63 (198)
                      ....|......|+++|++|+||||.+-.|....     ++..+.-...   -..         .+.+.            
T Consensus         4 ~~~~~~k~p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt~R~ga~eQL~~~a~~l~v~~~~~~~~~~~~~~~   83 (211)
T d1j8yf2           4 PKVIPDKIPYVIMLVGVQGTGKATTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIA   83 (211)
T ss_dssp             CCCSCSSSSEEEEEECSCCC----HHHHHHHHHHHTTCCEEEEECCCSSHHHHHHHHHHHHHHTCCEECCTTCCCHHHHH
T ss_pred             cccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEEeeccccchhHHHHHhccccCcceeecccchhhhHHH
Confidence            334455555668889999999999988777421     1111111100   000         00011            


Q ss_pred             --------EeCCceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHH-HHHHHhhCCc
Q 029158           64 --------KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHEL-ISLMERSQTK  134 (198)
Q Consensus        64 --------~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~-~~~~~~~~~p  134 (198)
                              ..+.++.+|||||...........   .+ +..+... ...+-+++|+|+..+.  ..... .......+ .
T Consensus        84 ~~a~~~~~~~~~d~IlIDTaGr~~~~~~~~~~---~e-l~~~~~~-~~~~~~~LVl~a~~~~--~~~~~~~~~~~~~~-~  155 (211)
T d1j8yf2          84 KRGVEKFLSEKMEIIIVDTAGRHGYGEEAALL---EE-MKNIYEA-IKPDEVTLVIDASIGQ--KAYDLASKFNQASK-I  155 (211)
T ss_dssp             HHHHHHHHHTTCSEEEEECCCSCCTTCHHHHH---HH-HHHHHHH-HCCSEEEEEEEGGGGG--GHHHHHHHHHHHCT-T
T ss_pred             HHHHHHhhccCCceEEEecCCcCccchhhHHH---HH-HHHHHhh-cCCceEEEEEecccCc--chHHHHhhhhcccC-c
Confidence                    124589999999963221111111   11 1122221 2356789999998642  22222 22223223 3


Q ss_pred             EEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEeccCCCCChHHH
Q 029158          135 YQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSL  185 (198)
Q Consensus       135 ~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~~~gi~~l  185 (198)
                      --+++||.|......  .......       ..+.|+.+++  +|+++++|
T Consensus       156 ~~lI~TKlDet~~~G--~~l~~~~-------~~~lPi~~it--~Gq~v~DL  195 (211)
T d1j8yf2         156 GTIIITKMDGTAKGG--GALSAVA-------ATGATIKFIG--TGEKIDEL  195 (211)
T ss_dssp             EEEEEECTTSCSCHH--HHHHHHH-------TTTCCEEEEE--CSSSTTCE
T ss_pred             ceEEEecccCCCccc--HHHHHHH-------HHCcCEEEEe--CCCCcccC
Confidence            347799999976432  2222211       2358888887  57776553

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=99.01  E-value=1.1e-09  Score=79.97  Aligned_cols=91  Identities=14%  Similarity=0.198  Sum_probs=70.2

Q ss_pred             HHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEe
Q 029158           95 KEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMV  174 (198)
Q Consensus        95 ~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  174 (198)
                      ++.......+|+|++|+|++.++...+..+.+.+.  ++|.|+|+||+|+.+....+++.+.+++       ...+.+++
T Consensus         7 r~i~~~i~~~DvIl~V~DaR~P~ss~~~~l~~~~~--~Kp~IlVlNK~DLv~~~~~~~w~~~f~~-------~~~~~i~i   77 (273)
T d1puja_           7 REVTEKLKLIDIVYELVDARIPMSSRNPMIEDILK--NKPRIMLLNKADKADAAVTQQWKEHFEN-------QGIRSLSI   77 (273)
T ss_dssp             HHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHCS--SSCEEEEEECGGGSCHHHHHHHHHHHHT-------TTCCEEEC
T ss_pred             HHHHHHHHhCCEEEEEEECCCCCCCCCHHHHHHHc--CCCeEEEEECccCCchHHHHHHHHHHHh-------cCCcccee
Confidence            34444455699999999999988888877766664  7899999999999987665555444432       24678999


Q ss_pred             ccCCCCChHHHHHHHHHhhc
Q 029158          175 SSKSGAGIRSLRTVLSKIAR  194 (198)
Q Consensus       175 Sa~~~~gi~~l~~~i~~~~~  194 (198)
                      |++++.|..++.+.+.+.+.
T Consensus        78 sa~~~~~~~~~~~~~~~~l~   97 (273)
T d1puja_          78 NSVNGQGLNQIVPASKEILQ   97 (273)
T ss_dssp             CTTTCTTGGGHHHHHHHHHH
T ss_pred             ecccCCCccccchhhhhhhh
Confidence            99999999999887776544

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.99  E-value=1.8e-10  Score=81.13  Aligned_cols=58  Identities=31%  Similarity=0.366  Sum_probs=41.5

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCccce--ee----cCCCCceeEEEEEEeCCceEEEeCCCCcc
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQWGVV--RT----SDKPGLTQTINFFKLGTKLCLVDLPGYGF   79 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~~~~~--~~----~~~~~~t~~~~~~~~~~~~~iiDtpG~~~   79 (198)
                      ...+++|++|+|||||+|+|.+.....  .+    .....||...+.+..+..-.++||||+.+
T Consensus        96 kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs~~~~rGrHTTt~~~l~~l~~gg~iiDTPG~r~  159 (225)
T d1u0la2          96 KISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFAN  159 (225)
T ss_dssp             SEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSSTT
T ss_pred             CeEEEECCCCCCHHHHHHhhcchhhhhccCcccccCCCCccccceeEEEECCCcEEEeCCcccc
Confidence            468999999999999999998763111  11    11234777777777777789999999854

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.97  E-value=3.8e-09  Score=74.74  Aligned_cols=141  Identities=15%  Similarity=0.179  Sum_probs=75.5

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCc---cceeecCCCC-ceeEEEE--------EE-----------------------
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQW---GVVRTSDKPG-LTQTINF--------FK-----------------------   64 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~~---~~~~~~~~~~-~t~~~~~--------~~-----------------------   64 (198)
                      +.|..++.|.-|||||||+++++...   +++.+.+..+ ...+...        ..                       
T Consensus         2 ~iPv~iitGFLGaGKTTll~~lL~~~~~~riaVI~Ne~g~~~iD~~~~~~~~~~~~el~~gcicc~~~~~~~~~l~~~~~   81 (222)
T d1nija1           2 PIAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLD   81 (222)
T ss_dssp             CEEEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHH
T ss_pred             CCCEEEEeeCCCCCHHHHHHHHHhcCCCCcEEEEEecccchhhhhhhhcccccceEEecCCcceeccchhHHHHHHHHHH
Confidence            45778999999999999999998642   3444443332 1122110        00                       


Q ss_pred             ------eCCceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCc--HHHHHHHHhhCCcEE
Q 029158           65 ------LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD--HELISLMERSQTKYQ  136 (198)
Q Consensus        65 ------~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~--~~~~~~~~~~~~p~i  136 (198)
                            ......++++.|..+..   .....+  ............+.++.++|+........  ..+..++.   ..-+
T Consensus        82 ~~~~~~~~~d~iiIE~sG~~~p~---~l~~~~--~~~~~~~~~~~l~~vi~vVDa~~~~~~~~~~~~~~~Qi~---~AD~  153 (222)
T d1nija1          82 NLDKGNIQFDRLVIECTGMADPG---PIIQTF--FSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVG---YADR  153 (222)
T ss_dssp             HHHHTSCCCSEEEEEEETTCCHH---HHHHHH--HHSHHHHHHEEEEEEEEEEETTTHHHHHHHCHHHHHHHH---TCSE
T ss_pred             HHhhccCCcceeEEeecccchhh---HHHHHH--HhhhcccccccccchhhhhhhhhhhhhhhhhHHHHHHHH---hCCc
Confidence                  01245888888875531   111000  01111222233688999999976321111  11223333   3448


Q ss_pred             EEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEec
Q 029158          137 VVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVS  175 (198)
Q Consensus       137 iv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~S  175 (198)
                      +|+||+|+.+..  +...+.+++.     .+..+++.+|
T Consensus       154 ivlNK~Dl~~~~--~~~~~~l~~l-----NP~a~Ii~~~  185 (222)
T d1nija1         154 ILLTKTDVAGEA--EKLHERLARI-----NARAPVYTVT  185 (222)
T ss_dssp             EEEECTTTCSCT--HHHHHHHHHH-----CSSSCEEECC
T ss_pred             ccccccccccHH--HHHHHHHHHH-----hCCCeEEEee
Confidence            999999998643  3333333332     3356777654

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=98.86  E-value=8.2e-09  Score=72.15  Aligned_cols=150  Identities=17%  Similarity=0.160  Sum_probs=76.1

Q ss_pred             CCCCCCCeEEEEcCCCCCHHHHHHHHhcC-----ccceeecC--CC-Cce---------eEEEEEE--------------
Q 029158           16 FPAPDLPEIAFAGRSNVGKSSMLNALTRQ-----WGVVRTSD--KP-GLT---------QTINFFK--------------   64 (198)
Q Consensus        16 ~~~~~~~~v~~vG~~~~GKSsli~~l~~~-----~~~~~~~~--~~-~~t---------~~~~~~~--------------   64 (198)
                      .++.....|+++|++|+||||.+-.|...     .++..+.-  +. +-.         ....++.              
T Consensus         6 ~~~~~p~vi~lvGptGvGKTTTiAKLAa~~~~~~~kV~lit~Dt~R~gA~eQL~~~a~~l~i~~~~~~~~~d~~~~~~~~   85 (213)
T d1vmaa2           6 VPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDA   85 (213)
T ss_dssp             CCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHH
T ss_pred             CCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEeecccccchhHHHHHHhhhcCccccccCCCCcHHHHHHHH
Confidence            34445557899999999999998877632     11111110  00 000         0011111              


Q ss_pred             ------eCCceEEEeCCCCccccchhHHHHHHHHHHHHHHhccc-----ccceEEEEEeCCCCCCcCcH-HHHHHHHhhC
Q 029158           65 ------LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRV-----SLKRVCLLIDTKWGVKPRDH-ELISLMERSQ  132 (198)
Q Consensus        65 ------~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~d~vi~v~d~~~~~~~~~~-~~~~~~~~~~  132 (198)
                            .+.++.+|||||.....     .....+ +..+.....     ..+-+++|+|+..+  ..+. +....... -
T Consensus        86 ~~~~~~~~~d~ilIDTaGr~~~d-----~~~~~e-l~~~~~~~~~~~~~~p~~~~LVl~a~~~--~~~~~~~~~~~~~-~  156 (213)
T d1vmaa2          86 VAHALARNKDVVIIDTAGRLHTK-----KNLMEE-LRKVHRVVKKKIPDAPHETLLVIDATTG--QNGLVQAKIFKEA-V  156 (213)
T ss_dssp             HHHHHHTTCSEEEEEECCCCSCH-----HHHHHH-HHHHHHHGGGTCTTCCSEEEEEEEGGGH--HHHHHHHHHHHHH-S
T ss_pred             HHHHHHcCCCEEEEeccccccch-----HHHHHH-HHHHHhhhhhccccccceeEEeeccccC--cchhhhhhhhccc-c
Confidence                  14578999999964321     111111 112222211     24678999999752  1111 12222222 2


Q ss_pred             CcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEeccCCCCChHHH
Q 029158          133 TKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSL  185 (198)
Q Consensus       133 ~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~~~gi~~l  185 (198)
                      -+-=+++||.|......  .......+.       ..|+.+++  +|++++++
T Consensus       157 ~~~~lI~TKlDe~~~~G--~~l~~~~~~-------~~Pi~~i~--~Gq~v~Dl  198 (213)
T d1vmaa2         157 NVTGIILTKLDGTAKGG--ITLAIAREL-------GIPIKFIG--VGEKAEDL  198 (213)
T ss_dssp             CCCEEEEECGGGCSCTT--HHHHHHHHH-------CCCEEEEE--CSSSGGGE
T ss_pred             CCceEEEecccCCCccc--HHHHHHHHH-------CCCEEEEe--CCCCcccC
Confidence            34468999999865332  222222221       47888887  56666553

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=98.81  E-value=5.5e-08  Score=67.68  Aligned_cols=102  Identities=17%  Similarity=0.140  Sum_probs=52.0

Q ss_pred             CCceEEEeCCCCccccchhHHHHHHHHHHHHHHhcc--cccceEEEEEeCCCCCCcCcH-HHHHHHHhhCCcEEEEEecc
Q 029158           66 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTR--VSLKRVCLLIDTKWGVKPRDH-ELISLMERSQTKYQVVLTKT  142 (198)
Q Consensus        66 ~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~--~~~d~vi~v~d~~~~~~~~~~-~~~~~~~~~~~p~iiv~nK~  142 (198)
                      +..+.++||+|....  .....+.+..+.+ .....  ...+-+++|+|+..+  ..+. +....... --+-=+++||.
T Consensus        91 ~~d~ilIDTaGr~~~--d~~~~~el~~l~~-~~~~~~~~~p~~~~LVl~a~~~--~~~~~~~~~~~~~-~~~~~lIlTKl  164 (211)
T d2qy9a2          91 NIDVLIADTAGRLQN--KSHLMEELKKIVR-VMKKLDVEAPHEVMLTIDASTG--QNAVSQAKLFHEA-VGLTGITLTKL  164 (211)
T ss_dssp             TCSEEEECCCCCGGG--HHHHHHHHHHHHH-HHTTTCTTCCSEEEEEEEGGGT--HHHHHHHHHHHHH-SCCCEEEEECC
T ss_pred             CCCEEEeccCCCccc--cHHHHHHHHHHHH-HHhhhcccCcceeeeehhcccC--cchHHHHhhhhhc-cCCceEEEeec
Confidence            357899999995332  1111111222221 11111  124678999999753  2222 22222222 23446889999


Q ss_pred             CCCCcHHHHHHHHHHHHHHHhccCCCCCcEEeccCCCCChHH
Q 029158          143 DTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRS  184 (198)
Q Consensus       143 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~~~gi~~  184 (198)
                      |......  .......+.       ..|+.+++  +|+++++
T Consensus       165 De~~~~G--~~l~~~~~~-------~~Pi~~i~--~Gq~v~D  195 (211)
T d2qy9a2         165 DGTAKGG--VIFSVADQF-------GIPIRYIG--VGERIED  195 (211)
T ss_dssp             TTCTTTT--HHHHHHHHH-------CCCEEEEE--CSSSGGG
T ss_pred             CCCCCcc--HHHHHHHHH-------CCCEEEEe--CCCCccc
Confidence            9865432  222222221       57888887  6776655

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.80  E-value=6.4e-10  Score=78.54  Aligned_cols=57  Identities=32%  Similarity=0.505  Sum_probs=34.7

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCccce--eecC----CCCceeEEEEEEeCCceEEEeCCCCcc
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQWGVV--RTSD----KPGLTQTINFFKLGTKLCLVDLPGYGF   79 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~~~~~--~~~~----~~~~t~~~~~~~~~~~~~iiDtpG~~~   79 (198)
                      ...+++|++|+|||||+|+|.+.....  .++.    ...||.....+..+ .-.++||||+.+
T Consensus        98 ~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs~~~~rGrHTTt~~~l~~~~-gg~iiDTPG~r~  160 (231)
T d1t9ha2          98 KTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIHTS-GGLVADTPGFSS  160 (231)
T ss_dssp             SEEEEEESHHHHHHHHHHHHCC-------------------CCCCCEEEET-TEEEESSCSCSS
T ss_pred             ceEEEECCCCccHHHHHHhhccHhHhhhcccccccCCCceeeeeEEEEecC-CCEEEECCcccc
Confidence            467899999999999999999863111  1111    12355554544444 457899999855

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.68  E-value=6.6e-08  Score=67.84  Aligned_cols=85  Identities=22%  Similarity=0.274  Sum_probs=58.7

Q ss_pred             cccceEEEEEeCCCCC-CcCc-HHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEeccCCC
Q 029158          102 VSLKRVCLLIDTKWGV-KPRD-HELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSG  179 (198)
Q Consensus       102 ~~~d~vi~v~d~~~~~-~~~~-~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~~  179 (198)
                      .+.|.+++|+.+.++. ...- .+++-.+...+.+.++|+||+||.++++.+........    . ....+++.+|++++
T Consensus         9 ANiD~vliV~s~~~P~~~~~~ldR~Lv~a~~~~i~pvIvlnK~DL~~~~~~~~~~~~~~~----~-~~~~~v~~vSa~~~   83 (225)
T d1u0la2           9 ANVDQVILVVTVKMPETSTYIIDKFLVLAEKNELETVMVINKMDLYDEDDLRKVRELEEI----Y-SGLYPIVKTSAKTG   83 (225)
T ss_dssp             ESCCEEEEEECSSTTCCCHHHHHHHHHHHHHTTCEEEEEECCGGGCCHHHHHHHHHHHHH----H-TTTSCEEECCTTTC
T ss_pred             ccCCEEEEEEeCCCCCCCHHHHHHHHHHHHHcCCCEEEEEeCcccCCHHHHHHHHHhhcc----c-ccceeEEEeccccc
Confidence            4578899999887632 2221 23444556678999999999999986654433322221    1 22478999999999


Q ss_pred             CChHHHHHHHHH
Q 029158          180 AGIRSLRTVLSK  191 (198)
Q Consensus       180 ~gi~~l~~~i~~  191 (198)
                      +|+++|.+++..
T Consensus        84 ~g~~~L~~~l~~   95 (225)
T d1u0la2          84 MGIEELKEYLKG   95 (225)
T ss_dssp             TTHHHHHHHHSS
T ss_pred             hhHhhHHHHhcC
Confidence            999999998753

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=98.59  E-value=1.3e-07  Score=65.72  Aligned_cols=104  Identities=19%  Similarity=0.179  Sum_probs=52.1

Q ss_pred             CCceEEEeCCCCccccchhHHHHHHHHHHHHHHh--cccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccC
Q 029158           66 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS--TRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTD  143 (198)
Q Consensus        66 ~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~--~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D  143 (198)
                      +.++.++||+|.....  ....+.+..+. +...  .....+-+++|+|+..+. ..-.+........+ +-=+++||.|
T Consensus        88 ~~d~ilIDTaGr~~~d--~~l~~el~~~~-~~~~~~~~~~p~~~~LVl~a~~~~-~~~~~~~~~~~~~~-~~~lI~TKlD  162 (207)
T d1okkd2          88 GYDLLFVDTAGRLHTK--HNLMEELKKVK-RAIAKADPEEPKEVWLVLDAVTGQ-NGLEQAKKFHEAVG-LTGVIVTKLD  162 (207)
T ss_dssp             TCSEEEECCCCCCTTC--HHHHHHHHHHH-HHHHHHCTTCCSEEEEEEETTBCT-HHHHHHHHHHHHHC-CSEEEEECTT
T ss_pred             CCCEEEcCccccchhh--HHHHHHHHHHH-HHhhhcccCCCceEEEEeecccCc-hHHHHHHHhhhccC-CceEEEeccC
Confidence            4579999999964321  11111111211 1111  112356789999998642 11122233333333 3357899999


Q ss_pred             CCCcHHHHHHHHHHHHHHHhccCCCCCcEEeccCCCCChHHH
Q 029158          144 TVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSL  185 (198)
Q Consensus       144 l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~~~gi~~l  185 (198)
                      ......  .......+.       ..|+.+++.  |++.+++
T Consensus       163 et~~~G--~~l~~~~~~-------~~Pi~~i~~--Gq~p~Dl  193 (207)
T d1okkd2         163 GTAKGG--VLIPIVRTL-------KVPIKFVGV--GEGPDDL  193 (207)
T ss_dssp             SSCCCT--THHHHHHHH-------CCCEEEEEC--SSSTTCE
T ss_pred             CCCCcc--HHHHHHHHH-------CCCEEEEeC--CCChHhC
Confidence            865432  111121111       578888873  5555544

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.55  E-value=4e-08  Score=69.16  Aligned_cols=87  Identities=14%  Similarity=0.180  Sum_probs=60.8

Q ss_pred             cccceEEEEEeCCCC-CCcCc-HHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEeccCCC
Q 029158          102 VSLKRVCLLIDTKWG-VKPRD-HELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSG  179 (198)
Q Consensus       102 ~~~d~vi~v~d~~~~-~~~~~-~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~~  179 (198)
                      .+.|.+++|+.+.++ +.... ..++-.....+++.++|+||+||.+..+.+.....+.+....   .+.+++.+|++++
T Consensus         9 ANiD~~~iV~s~~~P~~~~~~idR~Lv~a~~~~i~pvIvlnK~DL~~~~~~~~~~~~~~~~y~~---~g~~v~~~Sa~~~   85 (231)
T d1t9ha2           9 CNVDQAVLVFSAVQPSFSTALLDRFLVLVEANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRN---IGYDVYLTSSKDQ   85 (231)
T ss_dssp             ECCCEEEEEEESTTTTCCHHHHHHHHHHHHTTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHH---HTCCEEECCHHHH
T ss_pred             cccCEEEEEEECCCCCCCHHHHHHHHHHHHHcCCCEEEEEecccccccHHHHHHHHHHHHHHhh---ccccceeeecCCh
Confidence            457889999988653 22111 223444556689999999999999876655544444443332   2589999999999


Q ss_pred             CChHHHHHHHHH
Q 029158          180 AGIRSLRTVLSK  191 (198)
Q Consensus       180 ~gi~~l~~~i~~  191 (198)
                      +|+++|.+++..
T Consensus        86 ~gl~~L~~~l~~   97 (231)
T d1t9ha2          86 DSLADIIPHFQD   97 (231)
T ss_dssp             TTCTTTGGGGTT
T ss_pred             hHHHHHHHhhcc
Confidence            999999887643

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.46  E-value=9.2e-07  Score=59.61  Aligned_cols=22  Identities=23%  Similarity=0.602  Sum_probs=20.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 029158           23 EIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        23 ~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      +|+++|++|+|||||++.+++.
T Consensus         2 ki~I~G~~G~GKSTLl~~i~~~   23 (178)
T d1ye8a1           2 KIIITGEPGVGKTTLVKKIVER   23 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCcHHHHHHHHHHhc
Confidence            7999999999999999999875

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.43  E-value=1.5e-08  Score=70.70  Aligned_cols=41  Identities=12%  Similarity=0.010  Sum_probs=29.6

Q ss_pred             cceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCC
Q 029158          104 LKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDT  144 (198)
Q Consensus       104 ~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl  144 (198)
                      .++.++++|+..........+.+.+...+.+++++..+++.
T Consensus        84 ~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~  124 (213)
T d1bifa1          84 EGGHVAVFDATNTTRERRAMIFNFGEQNGYKTFFVESICVD  124 (213)
T ss_dssp             TCCSEEEEESCCCSHHHHHHHHHHHHHHTCEEEEEEECCCC
T ss_pred             cCCCEEEeecCCccHHHHHHHHHHHHhcCCeEEEEEeeccH
Confidence            45667889998754444455566677778899999888863

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=98.42  E-value=3.7e-07  Score=63.38  Aligned_cols=73  Identities=21%  Similarity=0.156  Sum_probs=39.1

Q ss_pred             CCceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCC
Q 029158           66 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV  145 (198)
Q Consensus        66 ~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~  145 (198)
                      +.++.+|||+|.....  ......+..    +.. ....+-+++|+|+..+  ...........+.--.-=+++||.|..
T Consensus        92 ~~d~vlIDTaGr~~~d--~~~~~el~~----~~~-~~~~~~~llv~~a~~~--~~~~~~~~~f~~~~~~~~~I~TKlDe~  162 (207)
T d1ls1a2          92 ARDLILVDTAGRLQID--EPLMGELAR----LKE-VLGPDEVLLVLDAMTG--QEALSVARAFDEKVGVTGLVLTKLDGD  162 (207)
T ss_dssp             TCCEEEEECCCCSSCC--HHHHHHHHH----HHH-HHCCSEEEEEEEGGGT--HHHHHHHHHHHHHTCCCEEEEECGGGC
T ss_pred             cCcceeecccccchhh--hhhHHHHHH----HHh-hcCCceEEEEeccccc--hhHHHHHHHHHhhCCCCeeEEeecCcc
Confidence            4578999999964421  111111222    111 2236789999999753  222333322222111234899999976


Q ss_pred             Cc
Q 029158          146 FP  147 (198)
Q Consensus       146 ~~  147 (198)
                      ..
T Consensus       163 ~~  164 (207)
T d1ls1a2         163 AR  164 (207)
T ss_dssp             SS
T ss_pred             cc
Confidence            54

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.22  E-value=4.6e-06  Score=56.10  Aligned_cols=27  Identities=19%  Similarity=0.311  Sum_probs=22.6

Q ss_pred             CCCCCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           18 APDLPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        18 ~~~~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      .+...-|+++|.|||||||++..++..
T Consensus        11 ~~~p~liil~G~pGsGKST~a~~l~~~   37 (172)
T d1yj5a2          11 SPNPEVVVAVGFPGAGKSTFIQEHLVS   37 (172)
T ss_dssp             CSSCCEEEEECCTTSSHHHHHHHHTGG
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHh
Confidence            345567999999999999999999765

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=98.07  E-value=1.2e-06  Score=58.50  Aligned_cols=24  Identities=38%  Similarity=0.601  Sum_probs=21.8

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhc
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTR   43 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~   43 (198)
                      +.|.++++|++|||||||+++|..
T Consensus         1 m~Pvi~itG~~GSGKTTL~~~L~~   24 (170)
T d1np6a_           1 MIPLLAFAAWSGTGKTTLLKKLIP   24 (170)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHH
Confidence            357899999999999999999985

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.03  E-value=6.3e-06  Score=59.66  Aligned_cols=61  Identities=26%  Similarity=0.285  Sum_probs=43.2

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCccc-eeecCCCCceeEEEEEEe------CCceEEEeCCCCccc
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQWGV-VRTSDKPGLTQTINFFKL------GTKLCLVDLPGYGFA   80 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~-~~~~~~~~~t~~~~~~~~------~~~~~iiDtpG~~~~   80 (198)
                      +...|.++|+.++|||+|+|.|++.... ........+|..+-.+..      +..+.++||.|+.+.
T Consensus        31 ~v~vvsi~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~Giw~~~~~~~~~~~~~~~~lDteG~~~~   98 (277)
T d1f5na2          31 PMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDV   98 (277)
T ss_dssp             BEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCG
T ss_pred             CEEEEEEECCCCCCHHHHHHHHcCCCCCCccCCCCCCCCCceEEEEeeccCCCCceEEEEeccccccc
Confidence            4567999999999999999999987421 222223456766543332      456899999998664

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=97.90  E-value=3e-06  Score=56.49  Aligned_cols=24  Identities=33%  Similarity=0.645  Sum_probs=21.7

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      .|+|+++|+|||||||+.+.|...
T Consensus         4 ~~~I~i~G~pGsGKTTia~~La~~   27 (173)
T d1rkba_           4 LPNILLTGTPGVGKTTLGKELASK   27 (173)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHH
Confidence            578999999999999999999764

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.88  E-value=4.4e-06  Score=56.54  Aligned_cols=40  Identities=18%  Similarity=0.170  Sum_probs=27.4

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeE
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT   59 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~   59 (198)
                      +...|+++||+|+||+||++.|+....-........||+.
T Consensus         2 m~k~ivl~Gpsg~GK~tl~~~L~~~~~~~~~~~v~~TTR~   41 (178)
T d1kgda_           2 MRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRP   41 (178)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSC
T ss_pred             CCCcEEEECCCCCCHHHHHHHHHHhCCcCeeeccccccCC
Confidence            3456899999999999999999865211223334445554

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.86  E-value=3.1e-06  Score=57.06  Aligned_cols=25  Identities=28%  Similarity=0.349  Sum_probs=22.5

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      ...+|++.|++|+|||||+++|...
T Consensus         6 ~~K~I~i~G~~GsGKTTla~~La~~   30 (192)
T d1lw7a2           6 FAKTVAILGGESSGKSVLVNKLAAV   30 (192)
T ss_dssp             TCEEEEEECCTTSHHHHHHHHHHHH
T ss_pred             cceEEEEECCCCCCHHHHHHHHHHH
Confidence            4578999999999999999999875

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=97.75  E-value=1.7e-05  Score=56.97  Aligned_cols=83  Identities=18%  Similarity=0.222  Sum_probs=45.1

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHHHHh
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS   99 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~   99 (198)
                      ....+++||++|+|||+++..|...-  . ....+..-.       +..+.-+|+..+......   ...|+..+...+.
T Consensus        38 ~k~n~lLVG~~GvGKTalv~~la~ri--~-~~~vp~~l~-------~~~i~~l~~~~liag~~~---~g~~e~r~~~i~~  104 (268)
T d1r6bx2          38 RKNNPLLVGESGVGKTAIAEGLAWRI--V-QGDVPEVMA-------DCTIYSLDIGSLLAGTKY---RGDFEKRFKALLK  104 (268)
T ss_dssp             SSCEEEEECCTTSSHHHHHHHHHHHH--H-HTCSCGGGT-------TCEEEECCCC---CCCCC---SSCHHHHHHHHHH
T ss_pred             ccCCcEEECCCCCcHHHHHHHHHHHH--H-hCCcccccc-------cceeEEeeechHhccCcc---chhHHHHHHHHHH
Confidence            45679999999999999999988641  1 122222112       223444555444321111   1223444445555


Q ss_pred             cccccceEEEEEeCCC
Q 029158          100 TRVSLKRVCLLIDTKW  115 (198)
Q Consensus       100 ~~~~~d~vi~v~d~~~  115 (198)
                      .....+.+++++|--+
T Consensus       105 ~~~~~~~iIlfiDeih  120 (268)
T d1r6bx2         105 QLEQDTNSILFIDEIH  120 (268)
T ss_dssp             HHSSSSCEEEEETTTT
T ss_pred             HhhccCCceEEecchH
Confidence            5545666788887655

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.74  E-value=8.7e-06  Score=53.16  Aligned_cols=23  Identities=22%  Similarity=0.213  Sum_probs=19.8

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      .-|+++|+||||||||++.|...
T Consensus         3 klIii~G~pGsGKTTla~~L~~~   25 (152)
T d1ly1a_           3 KIILTIGCPGSGKSTWAREFIAK   25 (152)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHh
Confidence            34788999999999999998754

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=97.73  E-value=1.2e-05  Score=53.66  Aligned_cols=26  Identities=27%  Similarity=0.449  Sum_probs=22.7

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           19 PDLPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        19 ~~~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      +...+|++.|++||||||+.+.|...
T Consensus         3 pk~~~I~i~G~~GsGKTT~~~~La~~   28 (174)
T d1y63a_           3 PKGINILITGTPGTGKTSMAEMIAAE   28 (174)
T ss_dssp             CSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCCEEEEEeCCCCCHHHHHHHHHHH
Confidence            45567999999999999999999865

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=97.69  E-value=1.3e-05  Score=54.72  Aligned_cols=26  Identities=15%  Similarity=0.231  Sum_probs=22.1

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           19 PDLPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        19 ~~~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      +..+.|+++|+|||||||+...|...
T Consensus         4 ~kp~iI~i~G~pGSGKsT~a~~La~~   29 (194)
T d1qf9a_           4 SKPNVVFVLGGPGSGKGTQCANIVRD   29 (194)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            34467899999999999999999865

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.69  E-value=9.4e-06  Score=54.02  Aligned_cols=23  Identities=26%  Similarity=0.476  Sum_probs=20.8

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      |+|+++|++||||||+.+.|...
T Consensus         2 p~IvliG~~G~GKSTig~~La~~   24 (165)
T d2iyva1           2 PKAVLVGLPGSGKSTIGRRLAKA   24 (165)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHHH
Confidence            78999999999999999998764

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.67  E-value=1.4e-05  Score=54.55  Aligned_cols=28  Identities=18%  Similarity=0.306  Sum_probs=24.6

Q ss_pred             CCCCCCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           17 PAPDLPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        17 ~~~~~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      .++..+.|+++|+|||||||+...|...
T Consensus         4 ~~~~~~iI~i~GppGSGKsT~a~~La~~   31 (196)
T d1ukza_           4 SPDQVSVIFVLGGPGAGKGTQCEKLVKD   31 (196)
T ss_dssp             CTTTCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            3456888999999999999999999875

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=97.67  E-value=1.6e-05  Score=54.22  Aligned_cols=27  Identities=22%  Similarity=0.391  Sum_probs=24.2

Q ss_pred             CCCCCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           18 APDLPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        18 ~~~~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      +.+..+|+++|+|||||||+...|...
T Consensus         3 ~~r~mrIiliG~PGSGKtT~a~~La~~   29 (189)
T d2ak3a1           3 SARLLRAAIMGAPGSGKGTVSSRITKH   29 (189)
T ss_dssp             SSCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCcceeEEEECCCCCCHHHHHHHHHHH
Confidence            456789999999999999999999876

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=97.63  E-value=1.2e-05  Score=53.37  Aligned_cols=23  Identities=30%  Similarity=0.372  Sum_probs=20.5

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      +-|++.|++||||||+++.|...
T Consensus         3 klI~i~G~~GsGKTTva~~L~~~   25 (176)
T d2bdta1           3 KLYIITGPAGVGKSTTCKRLAAQ   25 (176)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            45899999999999999999865

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.62  E-value=1.8e-05  Score=52.61  Aligned_cols=22  Identities=14%  Similarity=0.276  Sum_probs=19.3

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhc
Q 029158           22 PEIAFAGRSNVGKSSMLNALTR   43 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~   43 (198)
                      ..+.++|.+|||||||+++|+.
T Consensus         2 kii~I~G~~gSGKTTli~~l~~   23 (165)
T d1xjca_           2 NVWQVVGYKHSGKTTLMEKWVA   23 (165)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHHHH
Confidence            3568999999999999999875

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=97.59  E-value=1.8e-05  Score=53.80  Aligned_cols=24  Identities=13%  Similarity=0.270  Sum_probs=21.2

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      +.+|+++|++||||||+...|...
T Consensus         3 Pm~I~i~GppGsGKsT~a~~La~~   26 (189)
T d1zaka1           3 PLKVMISGAPASGKGTQCELIKTK   26 (189)
T ss_dssp             SCCEEEEESTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            457999999999999999998765

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.58  E-value=1.2e-05  Score=54.29  Aligned_cols=22  Identities=32%  Similarity=0.588  Sum_probs=19.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 029158           23 EIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        23 ~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      -|+++||+|||||||++.|...
T Consensus         4 iivl~GpsG~GK~tl~~~L~~~   25 (182)
T d1znwa1           4 VVVLSGPSAVGKSTVVRCLRER   25 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            5789999999999999999865

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=97.58  E-value=2.5e-05  Score=53.08  Aligned_cols=25  Identities=16%  Similarity=0.236  Sum_probs=21.8

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      ...+|+++|+|||||||+...|...
T Consensus         2 ~~~riil~G~pGSGKsT~a~~La~~   26 (190)
T d1ak2a1           2 KGVRAVLLGPPGAGKGTQAPKLAKN   26 (190)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHHHH
Confidence            4468889999999999999999865

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.57  E-value=1.2e-05  Score=54.65  Aligned_cols=21  Identities=38%  Similarity=0.605  Sum_probs=19.5

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 029158           24 IAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        24 v~~vG~~~~GKSsli~~l~~~   44 (198)
                      |+++||+|||||||++.|+..
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~   24 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            889999999999999999865

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=97.57  E-value=5.6e-05  Score=53.90  Aligned_cols=25  Identities=16%  Similarity=0.278  Sum_probs=21.9

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      ...-+++.||||+|||++++++.+.
T Consensus        44 ~~~~iLL~GppGtGKT~la~~iA~~   68 (256)
T d1lv7a_          44 IPKGVLMVGPPGTGKTLLAKAIAGE   68 (256)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCCeEEeeCCCCCCccHHHHHHHHH
Confidence            3456999999999999999999875

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=97.57  E-value=2.1e-05  Score=51.60  Aligned_cols=23  Identities=30%  Similarity=0.423  Sum_probs=20.5

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      ..|+++|++||||||+...|...
T Consensus         3 k~I~l~G~~GsGKSTvak~La~~   25 (169)
T d1kaga_           3 RNIFLVGPMGAGKSTIGRQLAQQ   25 (169)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            35899999999999999999875

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=97.54  E-value=2.2e-05  Score=55.54  Aligned_cols=24  Identities=33%  Similarity=0.434  Sum_probs=21.9

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      --.|+++|++|||||||++.|.+-
T Consensus        29 Ge~vaIvG~sGsGKSTLl~ll~gl   52 (241)
T d2pmka1          29 GEVIGIVGRSGSGKSTLTKLIQRF   52 (241)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhc
Confidence            457999999999999999999986

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.53  E-value=0.00055  Score=48.31  Aligned_cols=24  Identities=17%  Similarity=0.437  Sum_probs=21.3

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      ...|++.|+||+|||++++++.+.
T Consensus        40 ~~~vLL~GppGtGKT~la~alA~~   63 (246)
T d1d2na_          40 LVSVLLEGPPHSGKTALAAKIAEE   63 (246)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECcCCCCHHHHHHHHhhc
Confidence            345999999999999999999875

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=97.51  E-value=6.1e-05  Score=51.22  Aligned_cols=25  Identities=20%  Similarity=0.448  Sum_probs=21.7

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      ....++++|+||+|||+++..|...
T Consensus        42 ~k~n~lLvG~pGVGKTalv~~LA~r   66 (195)
T d1jbka_          42 TKNNPVLIGEPGVGKTAIVEGLAQR   66 (195)
T ss_dssp             SSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCCCeEEEecCCcccHHHHHHHHHH
Confidence            4557999999999999999998864

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.51  E-value=2.6e-05  Score=52.41  Aligned_cols=22  Identities=14%  Similarity=0.341  Sum_probs=20.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 029158           23 EIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        23 ~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      +|+++|+|||||||+...|...
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~   23 (182)
T d1zina1           2 NLVLMGLPGAGKGTQAEKIVAA   23 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999998765

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.50  E-value=1.7e-05  Score=54.10  Aligned_cols=21  Identities=33%  Similarity=0.642  Sum_probs=19.2

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 029158           24 IAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        24 v~~vG~~~~GKSsli~~l~~~   44 (198)
                      |+++||+|||||||++.|+..
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~~   23 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQE   23 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            789999999999999998764

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.48  E-value=2.8e-05  Score=55.41  Aligned_cols=24  Identities=38%  Similarity=0.519  Sum_probs=21.7

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      --.++++|++|||||||++.|++-
T Consensus        41 Ge~iaivG~sGsGKSTLl~ll~gl   64 (253)
T d3b60a1          41 GKTVALVGRSGSGKSTIASLITRF   64 (253)
T ss_dssp             TCEEEEEECTTSSHHHHHHHHTTT
T ss_pred             CCEEEEECCCCChHHHHHHHHhcc
Confidence            347999999999999999999986

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.48  E-value=2.9e-05  Score=51.98  Aligned_cols=23  Identities=17%  Similarity=0.453  Sum_probs=20.2

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      ..|+++|++|+|||||+..+...
T Consensus         2 k~v~ItG~~GtGKTtl~~~i~~~   24 (189)
T d2i3ba1           2 RHVFLTGPPGVGKTTLIHKASEV   24 (189)
T ss_dssp             CCEEEESCCSSCHHHHHHHHHHH
T ss_pred             cEEEEECCCCCcHHHHHHHHHHH
Confidence            35899999999999999998854

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=97.47  E-value=3.1e-05  Score=54.78  Aligned_cols=24  Identities=46%  Similarity=0.545  Sum_probs=21.7

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      --.++++|++|||||||++.|.+-
T Consensus        28 Ge~vaivG~sGsGKSTLl~ll~gl   51 (242)
T d1mv5a_          28 NSIIAFAGPSGGGKSTIFSLLERF   51 (242)
T ss_dssp             TEEEEEECCTTSSHHHHHHHHTTS
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHh
Confidence            457999999999999999999975

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.46  E-value=4.1e-05  Score=51.87  Aligned_cols=27  Identities=22%  Similarity=0.358  Sum_probs=22.4

Q ss_pred             CCCCCCeEEEEcCCCCCHHHHHHHHhc
Q 029158           17 PAPDLPEIAFAGRSNVGKSSMLNALTR   43 (198)
Q Consensus        17 ~~~~~~~v~~vG~~~~GKSsli~~l~~   43 (198)
                      ....+..|++.|++|||||||.+.|..
T Consensus        18 ~~~~~~iIgI~G~~GSGKSTla~~L~~   44 (198)
T d1rz3a_          18 KTAGRLVLGIDGLSRSGKTTLANQLSQ   44 (198)
T ss_dssp             CCSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             cCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            344566788999999999999999874

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=97.45  E-value=3.6e-05  Score=51.89  Aligned_cols=22  Identities=18%  Similarity=0.416  Sum_probs=20.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 029158           23 EIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        23 ~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      +|+++|+|||||||+...|...
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~   23 (182)
T d1s3ga1           2 NIVLMGLPGAGKGTQADRIVEK   23 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999999875

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.44  E-value=3.6e-05  Score=52.35  Aligned_cols=24  Identities=13%  Similarity=0.178  Sum_probs=21.4

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      ++.|+++|+|||||||....|...
T Consensus         1 p~iI~i~GppGSGKsT~a~~La~~   24 (194)
T d1teva_           1 PLVVFVLGGPGAGKGTQCARIVEK   24 (194)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHH
Confidence            367999999999999999999865

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.44  E-value=4.3e-05  Score=50.89  Aligned_cols=23  Identities=30%  Similarity=0.349  Sum_probs=20.0

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      ..|+++|.+||||||+.+.|...
T Consensus         7 ~~I~l~G~~GsGKTTia~~La~~   29 (183)
T d1m8pa3           7 FTIFLTGYMNSGKDAIARALQVT   29 (183)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            46889999999999999988754

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.44  E-value=3.3e-05  Score=54.09  Aligned_cols=25  Identities=32%  Similarity=0.380  Sum_probs=21.8

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      .--.++++|++|||||||++.+.+-
T Consensus        30 ~Ge~~~iiG~sGsGKSTLl~~i~gl   54 (230)
T d1l2ta_          30 EGEFVSIMGPSGSGKSTMLNIIGCL   54 (230)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred             CCCEEEEECCCCCCcchhhHhccCC
Confidence            3446899999999999999999886

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.44  E-value=4.6e-05  Score=50.46  Aligned_cols=25  Identities=28%  Similarity=0.348  Sum_probs=21.1

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      ....++++|++||||||+.+.|...
T Consensus         5 ~~~iivl~G~~GsGKsT~a~~La~~   29 (171)
T d1knqa_           5 DHHIYVLMGVSGSGKSAVASEVAHQ   29 (171)
T ss_dssp             TSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            3455788999999999999998764

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.43  E-value=3.6e-05  Score=54.73  Aligned_cols=25  Identities=24%  Similarity=0.299  Sum_probs=22.2

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCc
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQW   45 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~~   45 (198)
                      --.++++|++|||||||++.+.+-.
T Consensus        40 Ge~vaivG~sGsGKSTLl~li~gl~   64 (251)
T d1jj7a_          40 GEVTALVGPNGSGKSTVAALLQNLY   64 (251)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCEEEEECCCCCcHHHHHHHHhccc
Confidence            3479999999999999999999863

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.43  E-value=2.7e-05  Score=53.72  Aligned_cols=23  Identities=30%  Similarity=0.401  Sum_probs=20.3

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      .-|+++||+|+|||||++.|+..
T Consensus         3 ~livi~GPSG~GK~tl~~~L~~~   25 (205)
T d1s96a_           3 TLYIVSAPSGAGKSSLIQALLKT   25 (205)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHhh
Confidence            34789999999999999999865

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.41  E-value=4e-05  Score=53.70  Aligned_cols=24  Identities=29%  Similarity=0.425  Sum_probs=21.2

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      --.++++|++|||||||++.+.+-
T Consensus        26 Gei~~liGpsGsGKSTLl~~i~Gl   49 (232)
T d2awna2          26 GEFVVFVGPSGCGKSTLLRMIAGL   49 (232)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHHTS
T ss_pred             CCEEEEECCCCChHHHHHHHHhcC
Confidence            346899999999999999999875

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.40  E-value=4.5e-05  Score=51.31  Aligned_cols=22  Identities=18%  Similarity=0.351  Sum_probs=20.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 029158           23 EIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        23 ~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      +|+++|+|||||||+...|...
T Consensus         2 ~I~i~G~pGsGKsT~a~~La~~   23 (181)
T d2cdna1           2 RVLLLGPPGAGKGTQAVKLAEK   23 (181)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            7899999999999999999865

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.39  E-value=4.3e-05  Score=50.80  Aligned_cols=22  Identities=27%  Similarity=0.462  Sum_probs=19.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 029158           23 EIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        23 ~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      -|++.|++||||||+.+.|...
T Consensus         6 iI~l~G~~GsGKSTia~~La~~   27 (176)
T d1zp6a1           6 ILLLSGHPGSGKSTIAEALANL   27 (176)
T ss_dssp             EEEEEECTTSCHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999999775

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=97.39  E-value=4.5e-05  Score=50.42  Aligned_cols=22  Identities=36%  Similarity=0.585  Sum_probs=19.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 029158           23 EIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        23 ~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      +|+++|++||||||+...|...
T Consensus         2 ~I~liG~~GsGKsTi~k~La~~   23 (161)
T d1viaa_           2 NIVFIGFMGSGKSTLARALAKD   23 (161)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999999765

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=97.38  E-value=4.4e-05  Score=52.41  Aligned_cols=23  Identities=22%  Similarity=0.576  Sum_probs=21.0

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      -.++++|+.|||||||++.+++.
T Consensus        28 ei~~l~G~NGsGKSTLl~~i~gl   50 (200)
T d1sgwa_          28 NVVNFHGPNGIGKTTLLKTISTY   50 (200)
T ss_dssp             CCEEEECCTTSSHHHHHHHHTTS
T ss_pred             CEEEEECCCCChHHHHHHHHhcc
Confidence            35899999999999999999986

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.37  E-value=4.5e-05  Score=55.15  Aligned_cols=24  Identities=25%  Similarity=0.367  Sum_probs=21.6

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      --.++++|++|||||||++.+++.
T Consensus        62 Ge~vaivG~nGsGKSTLl~~i~Gl   85 (281)
T d1r0wa_          62 GEMLAITGSTGSGKTSLLMLILGE   85 (281)
T ss_dssp             TCEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CCEEEEECCCCChHHHHHHHHhCC
Confidence            346999999999999999999986

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.37  E-value=4.7e-05  Score=51.09  Aligned_cols=22  Identities=18%  Similarity=0.315  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 029158           23 EIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        23 ~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      +|+++|+|||||||+...|...
T Consensus         2 ~I~i~G~pGSGKsT~~~~La~~   23 (179)
T d1e4va1           2 RIILLGAPVAGKGTQAQFIMEK   23 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            7899999999999999998764

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=97.35  E-value=0.00012  Score=51.91  Aligned_cols=23  Identities=22%  Similarity=0.450  Sum_probs=21.0

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      .-|++.|++|+|||+|++++.+.
T Consensus        43 ~giLl~GppGtGKT~la~aia~~   65 (247)
T d1ixza_          43 KGVLLVGPPGVGKTHLARAVAGE   65 (247)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceEEEecCCCCChhHHHHHHHHH
Confidence            45999999999999999999975

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=97.35  E-value=6.9e-05  Score=49.71  Aligned_cols=23  Identities=30%  Similarity=0.445  Sum_probs=19.8

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      .-|++.|++||||||+.+.|...
T Consensus         4 kiI~l~G~~GsGKsTva~~L~~~   26 (178)
T d1qhxa_           4 RMIILNGGSSAGKSGIVRCLQSV   26 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            34777799999999999999875

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.34  E-value=6e-05  Score=50.66  Aligned_cols=23  Identities=17%  Similarity=0.326  Sum_probs=20.8

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      .+|+++|+|||||||+...|...
T Consensus         3 mrIvl~G~pGSGKtT~a~~La~~   25 (180)
T d1akya1           3 IRMVLIGPPGAGKGTQAPNLQER   25 (180)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            57899999999999999999865

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.34  E-value=5.4e-05  Score=53.25  Aligned_cols=23  Identities=22%  Similarity=0.352  Sum_probs=21.0

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      -.++++|++|||||||++.+.+-
T Consensus        33 e~~~liGpsGaGKSTLl~~i~Gl   55 (239)
T d1v43a3          33 EFLVLLGPSGCGKTTTLRMIAGL   55 (239)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHTS
T ss_pred             CEEEEECCCCChHHHHHHHHHcC
Confidence            46899999999999999999985

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=97.33  E-value=6.2e-05  Score=50.38  Aligned_cols=22  Identities=14%  Similarity=0.211  Sum_probs=19.3

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhc
Q 029158           22 PEIAFAGRSNVGKSSMLNALTR   43 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~   43 (198)
                      ..|++.|++||||||+++.|..
T Consensus         2 kiI~i~G~~GsGKsT~~~~L~~   23 (190)
T d1khta_           2 KVVVVTGVPGVGSTTSSQLAMD   23 (190)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3589999999999999998864

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=97.33  E-value=4.2e-05  Score=54.45  Aligned_cols=24  Identities=38%  Similarity=0.535  Sum_probs=21.7

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      --.++++|++|||||||++.|.+-
T Consensus        44 Ge~vaivG~sGsGKSTLl~ll~gl   67 (255)
T d2hyda1          44 GETVAFVGMSGGGKSTLINLIPRF   67 (255)
T ss_dssp             TCEEEEECSTTSSHHHHHTTTTTS
T ss_pred             CCEEEEECCCCCcHHHHHHHHHhc
Confidence            347999999999999999999876

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.32  E-value=5.8e-05  Score=53.05  Aligned_cols=22  Identities=23%  Similarity=0.329  Sum_probs=20.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 029158           23 EIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        23 ~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      .++++|+.|||||||++.+.+-
T Consensus        26 ~~~liGpnGaGKSTll~~i~Gl   47 (240)
T d2onka1          26 YCVLLGPTGAGKSVFLELIAGI   47 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCChHHHHHHHHHcC
Confidence            5789999999999999999986

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=97.32  E-value=6.9e-05  Score=49.88  Aligned_cols=23  Identities=22%  Similarity=0.340  Sum_probs=20.0

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      ..|+++|++||||||+.+.|...
T Consensus         3 ~~Iil~G~~GsGKSTia~~LA~~   25 (170)
T d1e6ca_           3 EPIFMVGARGCGMTTVGRELARA   25 (170)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHHH
T ss_pred             CCEEEECCCCCCHHHHHHHHHHH
Confidence            35789999999999999999764

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=97.31  E-value=6.5e-05  Score=52.87  Aligned_cols=25  Identities=20%  Similarity=0.193  Sum_probs=21.9

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCc
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQW   45 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~~   45 (198)
                      .-.++++|++|||||||++.+.+-.
T Consensus        29 Ge~~~liG~sGaGKSTll~~i~gl~   53 (240)
T d1g2912          29 GEFMILLGPSGCGKTTTLRMIAGLE   53 (240)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             CCEEEEECCCCChHHHHHHHHhcCC
Confidence            3468999999999999999999863

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=97.31  E-value=5.4e-05  Score=53.31  Aligned_cols=24  Identities=21%  Similarity=0.264  Sum_probs=21.6

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      --.++++|++|||||||++.+.+-
T Consensus        31 Ge~~~iiG~sGsGKSTLl~~i~Gl   54 (240)
T d3dhwc1          31 GQIYGVIGASGAGKSTLIRCVNLL   54 (240)
T ss_dssp             SCEEEEEESTTSSHHHHHHHHTTS
T ss_pred             CCEEEEECCCCCCHHHHHHHHcCC
Confidence            346899999999999999999886

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.29  E-value=0.00018  Score=50.06  Aligned_cols=66  Identities=11%  Similarity=0.046  Sum_probs=41.1

Q ss_pred             CceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEE-EEEeccCCC
Q 029158           67 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQ-VVLTKTDTV  145 (198)
Q Consensus        67 ~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~i-iv~nK~Dl~  145 (198)
                      ..+.++|+|+...           .. ....   ...+|.+++++.....-.....+.+..+++.+.|++ +|+||.|..
T Consensus       112 ~d~IiiD~~~~~~-----------~~-~~~~---l~~aD~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~giv~N~~~~~  176 (237)
T d1g3qa_         112 FDFILIDCPAGLQ-----------LD-AMSA---MLSGEEALLVTNPEISCLTDTMKVGIVLKKAGLAILGFVLNRYGRS  176 (237)
T ss_dssp             CSEEEEECCSSSS-----------HH-HHHH---HTTCSEEEEEECSCHHHHHHHHHHHHHHHHTTCEEEEEEEEEETSC
T ss_pred             CCEEEEccccccc-----------cc-chhh---hhhhhcccccccccceecchhhHHHHHHhhhhhhhhhhhhcccccc
Confidence            4789999987422           11 1112   223899999988753211223445566667788876 899999876


Q ss_pred             Cc
Q 029158          146 FP  147 (198)
Q Consensus       146 ~~  147 (198)
                      ..
T Consensus       177 ~~  178 (237)
T d1g3qa_         177 DR  178 (237)
T ss_dssp             TT
T ss_pred             cc
Confidence            53

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=97.26  E-value=4.4e-05  Score=53.36  Aligned_cols=23  Identities=17%  Similarity=0.287  Sum_probs=21.2

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      -.++++|++|||||||++.+.+-
T Consensus        27 e~~~liGpsGaGKSTll~~l~Gl   49 (229)
T d3d31a2          27 EYFVILGPTGAGKTLFLELIAGF   49 (229)
T ss_dssp             CEEEEECCCTHHHHHHHHHHHTS
T ss_pred             CEEEEECCCCCcHHHHHHHHhcC
Confidence            46899999999999999999986

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.25  E-value=8.8e-05  Score=50.41  Aligned_cols=24  Identities=17%  Similarity=0.243  Sum_probs=21.4

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      .+.|+++|+|||||||+...|...
T Consensus         8 ~~iI~l~G~pGSGKsT~a~~La~~   31 (194)
T d3adka_           8 SKIIFVVGGPGSGKGTQCEKIVQK   31 (194)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHH
Confidence            356899999999999999999876

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=97.22  E-value=8.1e-05  Score=52.49  Aligned_cols=23  Identities=22%  Similarity=0.432  Sum_probs=21.2

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      -.++++|+.|||||||++.+.+-
T Consensus        33 ei~~liGpnGaGKSTl~~~i~Gl   55 (240)
T d1ji0a_          33 QIVTLIGANGAGKTTTLSAIAGL   55 (240)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTS
T ss_pred             CEEEEECCCCCcHHHHHHHHhCC
Confidence            46899999999999999999986

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.22  E-value=3.5e-05  Score=52.22  Aligned_cols=24  Identities=25%  Similarity=0.234  Sum_probs=20.3

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      ...|+++|.|||||||+.+.|...
T Consensus        19 g~vI~L~G~pGSGKTTiAk~La~~   42 (195)
T d1x6va3          19 GCTVWLTGLSGAGKTTVSMALEEY   42 (195)
T ss_dssp             CEEEEEESSCHHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            346789999999999999999753

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=97.22  E-value=9.5e-05  Score=51.89  Aligned_cols=25  Identities=16%  Similarity=0.457  Sum_probs=21.9

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      ..+.+++.||||+||||+++.+++.
T Consensus        34 ~~~~~Ll~GPpG~GKTtla~~la~~   58 (239)
T d1ixsb2          34 PLEHLLLFGPPGLGKTTLAHVIAHE   58 (239)
T ss_dssp             CCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHH
Confidence            3466899999999999999999875

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=97.21  E-value=0.00036  Score=52.55  Aligned_cols=24  Identities=21%  Similarity=0.466  Sum_probs=20.1

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      ..++++||+||+|||+++..|...
T Consensus        43 k~n~llvG~~GvGKtaiv~~la~~   66 (387)
T d1qvra2          43 KNNPVLIGEPGVGKTAIVEGLAQR   66 (387)
T ss_dssp             CCCCEEEECTTSCHHHHHHHHHHH
T ss_pred             CCCCeEECCCCCCHHHHHHHHHHH
Confidence            445799999999999999887753

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.21  E-value=6.8e-05  Score=53.47  Aligned_cols=22  Identities=23%  Similarity=0.460  Sum_probs=20.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 029158           23 EIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        23 ~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      -|++.|+||+|||||+.++.+.
T Consensus        34 ~ilL~GpPGtGKT~la~~la~~   55 (273)
T d1gvnb_          34 AFLLGGQPGSGKTSLRSAIFEE   55 (273)
T ss_dssp             EEEEECCTTSCTHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4889999999999999999875

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=97.19  E-value=6.5e-05  Score=52.72  Aligned_cols=23  Identities=22%  Similarity=0.418  Sum_probs=21.0

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      -.++++|+.|||||||++.+.+-
T Consensus        26 ei~~iiG~nGaGKSTLl~~l~Gl   48 (231)
T d1l7vc_          26 EILHLVGPNGAGKSTLLARMAGM   48 (231)
T ss_dssp             CEEECBCCTTSSHHHHHHHHHTS
T ss_pred             CEEEEECCCCCcHHHHHHHHhCC
Confidence            46899999999999999999985

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.15  E-value=0.00012  Score=52.18  Aligned_cols=24  Identities=29%  Similarity=0.344  Sum_probs=21.5

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      --.++++|++|||||||++.+.+-
T Consensus        28 GEi~~iiG~sGsGKSTLl~~i~Gl   51 (258)
T d1b0ua_          28 GDVISIIGSSGSGKSTFLRCINFL   51 (258)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred             CCEEEEECCCCCcHHHHHHHHHcC
Confidence            346899999999999999999986

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=97.14  E-value=0.00012  Score=49.21  Aligned_cols=23  Identities=26%  Similarity=0.281  Sum_probs=19.2

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      ..|++.|.+||||||+++.|...
T Consensus         2 kiivi~G~~GsGKTT~~~~La~~   24 (194)
T d1nksa_           2 KIGIVTGIPGVGKSTVLAKVKEI   24 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            34678899999999999998653

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=97.13  E-value=0.00013  Score=51.35  Aligned_cols=23  Identities=17%  Similarity=0.361  Sum_probs=21.1

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      -.++++|+.|||||||++.+.+-
T Consensus        29 ei~glvG~nGaGKSTLl~~l~G~   51 (238)
T d1vpla_          29 EIFGLIGPNGAGKTTTLRIISTL   51 (238)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTTS
T ss_pred             CEEEEECCCCCCHHHHHHHHhcC
Confidence            45899999999999999999986

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=97.12  E-value=0.00014  Score=51.01  Aligned_cols=24  Identities=21%  Similarity=0.529  Sum_probs=21.1

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      .+.+++.||||+||||+++.+++.
T Consensus        35 ~~~~L~~GPpGtGKT~lA~~la~~   58 (238)
T d1in4a2          35 LDHVLLAGPPGLGKTTLAHIIASE   58 (238)
T ss_dssp             CCCEEEESSTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHhc
Confidence            346899999999999999999865

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=97.10  E-value=6.2e-05  Score=53.00  Aligned_cols=24  Identities=17%  Similarity=0.317  Sum_probs=21.7

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      --.++++|++|||||||++.+.+-
T Consensus        31 Ge~~~iiG~sGsGKSTll~~i~gl   54 (242)
T d1oxxk2          31 GERFGILGPSGAGKTTFMRIIAGL   54 (242)
T ss_dssp             TCEEEEECSCHHHHHHHHHHHHTS
T ss_pred             CCEEEEECCCCCcHHHHHHHHHcC
Confidence            347899999999999999999986

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.07  E-value=0.00014  Score=51.70  Aligned_cols=24  Identities=25%  Similarity=0.309  Sum_probs=21.6

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      --.++++|+.|||||||++.+.+.
T Consensus        30 Gei~~liG~nGaGKSTLl~~i~Gl   53 (254)
T d1g6ha_          30 GDVTLIIGPNGSGKSTLINVITGF   53 (254)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred             CCEEEEECCCCCcHHHHHHHHHCC
Confidence            346899999999999999999986

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=97.06  E-value=0.00015  Score=50.05  Aligned_cols=25  Identities=28%  Similarity=0.498  Sum_probs=21.8

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCc
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQW   45 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~~   45 (198)
                      .|.|++.|||||||||+...|....
T Consensus         3 ~piI~I~GppGSGKgT~ak~La~~~   27 (225)
T d1ckea_           3 APVITIDGPSGAGKGTLCKAMAEAL   27 (225)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHh
Confidence            4678888999999999999998763

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=97.04  E-value=0.00015  Score=53.37  Aligned_cols=23  Identities=13%  Similarity=0.393  Sum_probs=21.0

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      ..|++.|++|||||||+++|++.
T Consensus       167 ~nili~G~tgSGKTT~l~al~~~  189 (323)
T d1g6oa_         167 KNVIVCGGTGSGKTTYIKSIMEF  189 (323)
T ss_dssp             CCEEEEESTTSSHHHHHHHHGGG
T ss_pred             CCEEEEeeccccchHHHHHHhhh
Confidence            46999999999999999999975

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.01  E-value=0.00031  Score=49.51  Aligned_cols=26  Identities=12%  Similarity=0.271  Sum_probs=22.8

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           19 PDLPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        19 ~~~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      ...+.+++.||+|+||||++.++++.
T Consensus        50 ~~~~~lll~GPpG~GKTt~a~~la~~   75 (253)
T d1sxja2          50 GVFRAAMLYGPPGIGKTTAAHLVAQE   75 (253)
T ss_dssp             TSCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHH
Confidence            34567999999999999999999986

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.98  E-value=0.00025  Score=48.09  Aligned_cols=26  Identities=19%  Similarity=0.318  Sum_probs=22.1

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           19 PDLPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        19 ~~~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      ....-|++-|..||||||+++.|...
T Consensus         7 ~kp~~I~ieG~~GsGKTTl~~~L~~~   32 (197)
T d2vp4a1           7 TQPFTVLIEGNIGSGKTTYLNHFEKY   32 (197)
T ss_dssp             CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHH
Confidence            34457999999999999999999765

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.98  E-value=0.00022  Score=49.02  Aligned_cols=22  Identities=27%  Similarity=0.347  Sum_probs=19.4

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhc
Q 029158           22 PEIAFAGRSNVGKSSMLNALTR   43 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~   43 (198)
                      ..|++.|++|||||||.+.|..
T Consensus         3 ~iIgI~G~~gSGKSTla~~L~~   24 (213)
T d1uj2a_           3 FLIGVSGGTASGKSSVCAKIVQ   24 (213)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4688999999999999998864

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=96.97  E-value=0.00028  Score=49.94  Aligned_cols=25  Identities=28%  Similarity=0.454  Sum_probs=21.7

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      ....+++.|++|+|||++++.+...
T Consensus        42 ~~~~lll~GppGtGKT~l~~~l~~~   66 (276)
T d1fnna2          42 HYPRATLLGRPGTGKTVTLRKLWEL   66 (276)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCceEEECCCCCCHHHHHHHHHHH
Confidence            4457999999999999999998864

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.93  E-value=0.00028  Score=49.14  Aligned_cols=24  Identities=42%  Similarity=0.736  Sum_probs=21.3

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      .+.+++.|++|+||||++..+.+.
T Consensus        45 ~~~lll~Gp~G~GKTtla~~iak~   68 (231)
T d1iqpa2          45 MPHLLFAGPPGVGKTTAALALARE   68 (231)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHH
Confidence            456999999999999999998874

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=96.83  E-value=0.00039  Score=47.82  Aligned_cols=24  Identities=29%  Similarity=0.260  Sum_probs=20.9

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhc
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTR   43 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~   43 (198)
                      ....|.+.|.||||||||.+.|..
T Consensus        23 kg~vIwltGlsGsGKTTia~~L~~   46 (208)
T d1m7ga_          23 RGLTIWLTGLSASGKSTLAVELEH   46 (208)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            445799999999999999999875

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.82  E-value=0.00031  Score=51.32  Aligned_cols=24  Identities=25%  Similarity=0.429  Sum_probs=21.0

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      ...++++||||+|||.|++++.+.
T Consensus        49 ~~~iLl~GPpG~GKT~lAkalA~~   72 (309)
T d1ofha_          49 PKNILMIGPTGVGKTEIARRLAKL   72 (309)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHhhc
Confidence            345899999999999999999865

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.79  E-value=0.0022  Score=44.25  Aligned_cols=43  Identities=19%  Similarity=0.176  Sum_probs=25.2

Q ss_pred             cceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEE-EEEeccCCCC
Q 029158          104 LKRVCLLIDTKWGVKPRDHELISLMERSQTKYQ-VVLTKTDTVF  146 (198)
Q Consensus       104 ~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~i-iv~nK~Dl~~  146 (198)
                      +|.++++......-.......+...++.+.+.+ +|+||.+...
T Consensus       132 ad~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~N~~~~~~  175 (232)
T d1hyqa_         132 AQELLLVVNPEISSITDGLKTKIVAERLGTKVLGVVVNRITTLG  175 (232)
T ss_dssp             SSEEEEEECSSHHHHHHHHHHHHHHHHHTCEEEEEEEEEECTTT
T ss_pred             hheeeeeccccccchhhhhhhhhhhhhccccccccccccccccc
Confidence            788888887643111111233455555666654 7899987544

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.78  E-value=0.00044  Score=48.09  Aligned_cols=24  Identities=42%  Similarity=0.703  Sum_probs=21.0

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      .+.+++.|++|+||||++..+++.
T Consensus        33 ~~~lll~Gp~G~GKTtl~~~i~~~   56 (237)
T d1sxjd2          33 LPHMLFYGPPGTGKTSTILALTKE   56 (237)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCChHHHHHHHHHH
Confidence            456899999999999999999864

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=96.67  E-value=0.00061  Score=46.91  Aligned_cols=24  Identities=25%  Similarity=0.520  Sum_probs=20.7

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCc
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQW   45 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~~   45 (198)
                      ..|++-||+||||||+...|....
T Consensus         4 i~IaIdGp~GsGKgT~ak~La~~l   27 (223)
T d1q3ta_           4 IQIAIDGPASSGKSTVAKIIAKDF   27 (223)
T ss_dssp             CEEEEECSSCSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            467888999999999999998753

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.67  E-value=0.00051  Score=48.22  Aligned_cols=25  Identities=32%  Similarity=0.492  Sum_probs=21.4

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      ..+.+++.|++|+||||++..++..
T Consensus        32 ~~~~lll~Gp~G~GKTt~~~~la~~   56 (252)
T d1sxje2          32 DLPHLLLYGPNGTGKKTRCMALLES   56 (252)
T ss_dssp             CCCCEEEECSTTSSHHHHHHTHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHh
Confidence            3456899999999999999998764

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=96.65  E-value=0.00056  Score=46.07  Aligned_cols=23  Identities=26%  Similarity=0.277  Sum_probs=19.6

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhc
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTR   43 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~   43 (198)
                      +..|++.|.+||||||+.+.|..
T Consensus         3 p~IIgitG~~gSGKstva~~l~~   25 (191)
T d1uf9a_           3 PIIIGITGNIGSGKSTVAALLRS   25 (191)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            45688999999999999998854

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.64  E-value=0.00057  Score=47.29  Aligned_cols=24  Identities=21%  Similarity=0.628  Sum_probs=20.6

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      .+.+++.|++|+||||++..+...
T Consensus        36 ~~~~ll~Gp~G~GKTt~a~~la~~   59 (224)
T d1sxjb2          36 MPHMIISGMPGIGKTTSVHCLAHE   59 (224)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCchhhHHHHHHH
Confidence            456899999999999999988754

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.60  E-value=0.00062  Score=47.13  Aligned_cols=24  Identities=42%  Similarity=0.720  Sum_probs=20.9

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      .+.+++.|++|+||||++..+++.
T Consensus        35 ~~~lLl~Gp~G~GKttl~~~la~~   58 (227)
T d1sxjc2          35 LPHLLFYGPPGTGKTSTIVALARE   58 (227)
T ss_dssp             CCCEEEECSSSSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCChhHHHHHHHHH
Confidence            345899999999999999999864

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.55  E-value=0.00078  Score=47.82  Aligned_cols=24  Identities=21%  Similarity=0.317  Sum_probs=21.3

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      ..-+++.||||+|||++++++.+.
T Consensus        38 ~~giLL~GppGtGKT~l~~ala~~   61 (258)
T d1e32a2          38 PRGILLYGPPGTGKTLIARAVANE   61 (258)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CceeEEecCCCCCchHHHHHHHHH
Confidence            345999999999999999999885

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=96.52  E-value=0.00027  Score=50.32  Aligned_cols=21  Identities=19%  Similarity=0.411  Sum_probs=18.1

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 029158           24 IAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        24 v~~vG~~~~GKSsli~~l~~~   44 (198)
                      +.+.|+||+|||++++.++..
T Consensus        49 l~l~GppGtGKT~l~~~l~~~   69 (287)
T d1w5sa2          49 YGSIGRVGIGKTTLAKFTVKR   69 (287)
T ss_dssp             EECTTCCSSSHHHHHHHHHHH
T ss_pred             EEeECCCCCCHHHHHHHHHHH
Confidence            455699999999999999865

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=96.50  E-value=0.00064  Score=48.11  Aligned_cols=24  Identities=25%  Similarity=0.304  Sum_probs=20.5

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      ...|++.|++|+|||||+.+++..
T Consensus        29 ~~~i~i~G~~G~GKTsLl~~~~~~   52 (283)
T d2fnaa2          29 APITLVLGLRRTGKSSIIKIGINE   52 (283)
T ss_dssp             SSEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCcHHHHHHHHHHH
Confidence            356889999999999999998753

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=96.48  E-value=0.00046  Score=49.66  Aligned_cols=24  Identities=25%  Similarity=0.468  Sum_probs=17.7

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhc
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTR   43 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~   43 (198)
                      ..|.|++.|.+||||||+.++|..
T Consensus         3 k~pIIgIaG~SGSGKTTva~~l~~   26 (288)
T d1a7ja_           3 KHPIISVTGSSGAGTSTVKHTFDQ   26 (288)
T ss_dssp             TSCEEEEESCC---CCTHHHHHHH
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHH
Confidence            456899999999999999998754

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.42  E-value=0.0008  Score=51.56  Aligned_cols=23  Identities=26%  Similarity=0.471  Sum_probs=20.7

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhc
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTR   43 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~   43 (198)
                      ..+|+++||+|+|||-|++.|.+
T Consensus        49 ksNILliGPTGvGKTlLAr~LAk   71 (443)
T d1g41a_          49 PKNILMIGPTGVGKTEIARRLAK   71 (443)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHH
T ss_pred             cccEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999999875

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=96.40  E-value=0.0011  Score=45.41  Aligned_cols=23  Identities=30%  Similarity=0.374  Sum_probs=19.7

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhc
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTR   43 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~   43 (198)
                      ...|+++|..||||||+.+.|..
T Consensus         3 k~iIgitG~igSGKStv~~~l~~   25 (208)
T d1vhta_           3 RYIVALTGGIGSGKSTVANAFAD   25 (208)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CEEEEEECCCcCCHHHHHHHHHH
Confidence            34789999999999999998764

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.36  E-value=0.001  Score=47.38  Aligned_cols=24  Identities=21%  Similarity=0.405  Sum_probs=21.7

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      ..-|++.|++|+|||+|++++++.
T Consensus        41 ~~giLL~Gp~GtGKT~l~~ala~~   64 (265)
T d1r7ra3          41 SKGVLFYGPPGCGKTLLAKAIANE   64 (265)
T ss_dssp             CCEEEEBCCTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcchhHHHHHHHH
Confidence            446999999999999999999986

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=96.34  E-value=0.0012  Score=47.95  Aligned_cols=26  Identities=31%  Similarity=0.252  Sum_probs=21.4

Q ss_pred             CCCCCeEEEEcCCCCCHHHHHHHHhc
Q 029158           18 APDLPEIAFAGRSNVGKSSMLNALTR   43 (198)
Q Consensus        18 ~~~~~~v~~vG~~~~GKSsli~~l~~   43 (198)
                      ......|++.|++||||||+.+.|..
T Consensus        77 ~k~P~iIGIaG~sgSGKSTla~~L~~  102 (308)
T d1sq5a_          77 QRIPYIISIAGSVAVGKSTTARVLQA  102 (308)
T ss_dssp             CCCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCCEEEEEeCCCCCCCcHHHHHHHH
Confidence            34567899999999999999887753

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.32  E-value=0.00088  Score=46.58  Aligned_cols=24  Identities=29%  Similarity=0.533  Sum_probs=21.2

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      ...|++-|+.||||||+++.|...
T Consensus         2 ~k~I~ieG~dGsGKST~~~~L~~~   25 (241)
T d1p5zb_           2 IKKISIEGNIAAGKSTFVNILKQL   25 (241)
T ss_dssp             CEEEEEECSTTSSHHHHHTTTGGG
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHH
Confidence            457999999999999999998764

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.24  E-value=0.0012  Score=44.78  Aligned_cols=21  Identities=29%  Similarity=0.491  Sum_probs=18.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 029158           23 EIAFAGRSNVGKSSMLNALTR   43 (198)
Q Consensus        23 ~v~~vG~~~~GKSsli~~l~~   43 (198)
                      .|++-|..||||||+++.|..
T Consensus         2 lI~ieG~dGsGKST~~~~L~~   22 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSG   22 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            488999999999999998875

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=96.18  E-value=0.0015  Score=44.50  Aligned_cols=22  Identities=23%  Similarity=0.372  Sum_probs=19.2

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhc
Q 029158           22 PEIAFAGRSNVGKSSMLNALTR   43 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~   43 (198)
                      ..|+++|..||||||+.+.|..
T Consensus         3 ~iIgITG~igSGKStv~~~l~~   24 (205)
T d1jjva_           3 YIVGLTGGIGSGKTTIANLFTD   24 (205)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            5689999999999999987754

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=96.08  E-value=0.002  Score=47.98  Aligned_cols=25  Identities=24%  Similarity=0.288  Sum_probs=21.5

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      ...-+++.||||+|||++..++++.
T Consensus       153 ~~~~~~~~g~~~~gk~~~~~~~~~~  177 (362)
T d1svma_         153 KKRYWLFKGPIDSGKTTLAAALLEL  177 (362)
T ss_dssp             TCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CcCeEEEECCCCCCHHHHHHHHHHH
Confidence            3456999999999999999998864

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.03  E-value=0.0024  Score=45.81  Aligned_cols=22  Identities=27%  Similarity=0.169  Sum_probs=18.6

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHh
Q 029158           21 LPEIAFAGRSNVGKSSMLNALT   42 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~   42 (198)
                      +.-|++.|.+|||||||...|.
T Consensus        27 P~iIGi~G~qGSGKSTl~~~l~   48 (286)
T d1odfa_          27 PLFIFFSGPQGSGKSFTSIQIY   48 (286)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHH
T ss_pred             CEEEEeECCCCCCHHHHHHHHH
Confidence            4578899999999999987664

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=95.98  E-value=0.0057  Score=39.73  Aligned_cols=22  Identities=14%  Similarity=0.341  Sum_probs=20.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 029158           23 EIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        23 ~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      .|++-|+-|||||||++.++..
T Consensus        35 ii~L~G~LGaGKTtfvr~~~~~   56 (158)
T d1htwa_          35 MVYLNGDLGAGKTTLTRGMLQG   56 (158)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEecCCCccHHHHHHHHHhh
Confidence            5888999999999999999875

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=95.95  E-value=0.0019  Score=44.01  Aligned_cols=21  Identities=24%  Similarity=0.374  Sum_probs=18.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 029158           23 EIAFAGRSNVGKSSMLNALTR   43 (198)
Q Consensus        23 ~v~~vG~~~~GKSsli~~l~~   43 (198)
                      -|++-|..||||||+++.|..
T Consensus         4 fIviEG~dGsGKsT~~~~L~~   24 (210)
T d4tmka_           4 YIVIEGLEGAGKTTARNVVVE   24 (210)
T ss_dssp             EEEEEECTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478889999999999998875

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=95.94  E-value=0.0021  Score=42.69  Aligned_cols=22  Identities=32%  Similarity=0.447  Sum_probs=19.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 029158           23 EIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        23 ~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      -|++.|++|+||||+.-.|...
T Consensus        16 gvl~~G~sG~GKStlal~l~~~   37 (176)
T d1kkma_          16 GVLITGDSGVGKSETALELVQR   37 (176)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHT
T ss_pred             EEEEEeCCCCCHHHHHHHHHHc
Confidence            4899999999999999888765

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=95.93  E-value=0.0022  Score=42.57  Aligned_cols=22  Identities=32%  Similarity=0.496  Sum_probs=19.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 029158           23 EIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        23 ~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      -|++.|++|+||||+.-.|...
T Consensus        17 gvli~G~sG~GKS~lal~l~~~   38 (177)
T d1knxa2          17 GVLLTGRSGIGKSECALDLINK   38 (177)
T ss_dssp             EEEEEESSSSSHHHHHHHHHTT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHc
Confidence            4899999999999999988865

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=95.87  E-value=0.0026  Score=43.67  Aligned_cols=22  Identities=27%  Similarity=0.403  Sum_probs=20.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 029158           23 EIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        23 ~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      .+.+.|++|+|||.|+.++++.
T Consensus        38 ~l~l~G~~G~GKTHLl~A~~~~   59 (213)
T d1l8qa2          38 PIFIYGSVGTGKTHLLQAAGNE   59 (213)
T ss_dssp             SEEEECSSSSSHHHHHHHHHHH
T ss_pred             cEEEECCCCCcHHHHHHHHHHH
Confidence            4889999999999999999875

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=95.82  E-value=0.0032  Score=46.83  Aligned_cols=24  Identities=25%  Similarity=0.434  Sum_probs=20.6

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhc
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTR   43 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~   43 (198)
                      ....++++||+|+|||-|.++|..
T Consensus        67 p~~niLfiGPTGvGKTElAk~LA~   90 (364)
T d1um8a_          67 SKSNILLIGPTGSGKTLMAQTLAK   90 (364)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcceeeeCCCCccHHHHHHHHHh
Confidence            455699999999999999998864

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.80  E-value=0.0026  Score=43.04  Aligned_cols=23  Identities=17%  Similarity=0.260  Sum_probs=19.5

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      .-+.+.|+||+|||+|...++..
T Consensus        24 ~v~~i~G~~GsGKT~l~l~la~~   46 (242)
T d1n0wa_          24 SITEMFGEFRTGKTQICHTLAVT   46 (242)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEEEeCCCCCHHHHHHHHHHH
Confidence            35799999999999998887753

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.78  E-value=0.0025  Score=43.60  Aligned_cols=21  Identities=29%  Similarity=0.374  Sum_probs=18.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 029158           23 EIAFAGRSNVGKSSMLNALTR   43 (198)
Q Consensus        23 ~v~~vG~~~~GKSsli~~l~~   43 (198)
                      -|++-|..||||||+++.|..
T Consensus         5 lI~ieG~dGsGKsT~~~~L~~   25 (209)
T d1nn5a_           5 LIVLEGVDRAGKSTQSRKLVE   25 (209)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478889999999999888765

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=95.78  E-value=0.0024  Score=48.17  Aligned_cols=23  Identities=30%  Similarity=0.309  Sum_probs=20.4

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      --|++.|++||||||.+.+++..
T Consensus       159 GliLvtGpTGSGKSTTl~~~l~~  181 (401)
T d1p9ra_         159 GIILVTGPTGSGKSTTLYAGLQE  181 (401)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHHH
T ss_pred             ceEEEEcCCCCCccHHHHHHhhh
Confidence            35999999999999999998874

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=95.77  E-value=0.0033  Score=45.80  Aligned_cols=23  Identities=30%  Similarity=0.525  Sum_probs=19.9

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      ..++++||+|+|||.|+..|...
T Consensus        53 ~~~lf~Gp~GvGKT~lak~la~~   75 (315)
T d1r6bx3          53 GSFLFAGPTGVGKTEVTVQLSKA   75 (315)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCcchhHHHHHHHHhh
Confidence            36899999999999999988753

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.76  E-value=0.0029  Score=43.92  Aligned_cols=24  Identities=29%  Similarity=0.501  Sum_probs=20.6

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      +..|++-|..||||||+++.|...
T Consensus         2 pk~IviEG~~GsGKST~~~~L~~~   25 (241)
T d2ocpa1           2 PRRLSIEGNIAVGKSTFVKLLTKT   25 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHH
Confidence            346899999999999999999753

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=95.73  E-value=0.0037  Score=41.21  Aligned_cols=23  Identities=26%  Similarity=0.406  Sum_probs=19.8

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      .-|++.|++|+||||+.-.|...
T Consensus        16 ~gvli~G~sg~GKS~la~~l~~~   38 (169)
T d1ko7a2          16 VGVLITGDSGIGKSETALELIKR   38 (169)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHT
T ss_pred             EEEEEEeCCCCCHHHHHHHHHHc
Confidence            35899999999999999887765

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=95.65  E-value=0.0035  Score=44.77  Aligned_cols=24  Identities=21%  Similarity=0.217  Sum_probs=20.8

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      ...|++.|+.|.|||||+..+++.
T Consensus        44 ~~~v~I~GmgGiGKTtLA~~v~~~   67 (277)
T d2a5yb3          44 SFFLFLHGRAGSGKSVIASQALSK   67 (277)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHh
Confidence            446899999999999999998764

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=95.55  E-value=0.00059  Score=45.96  Aligned_cols=20  Identities=25%  Similarity=0.468  Sum_probs=17.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHh
Q 029158           23 EIAFAGRSNVGKSSMLNALT   42 (198)
Q Consensus        23 ~v~~vG~~~~GKSsli~~l~   42 (198)
                      ..+++|+.|||||||+.+|.
T Consensus        26 ~tvi~G~NGsGKStil~Ai~   45 (222)
T d1qhla_          26 VTTLSGGNGAGKSTTMAAFV   45 (222)
T ss_dssp             HHHHHSCCSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHH
Confidence            35778999999999999975

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.53  E-value=0.0033  Score=43.45  Aligned_cols=23  Identities=22%  Similarity=0.280  Sum_probs=19.9

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      ..+.+.|+||+|||+|...++..
T Consensus        35 ~~~li~G~pGsGKT~l~lq~~~~   57 (251)
T d1szpa2          35 SITELFGEFRTGKSQLCHTLAVT   57 (251)
T ss_dssp             SEEEEEESTTSSHHHHHHHHTTT
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHH
Confidence            46899999999999999888754

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=95.52  E-value=0.0019  Score=47.38  Aligned_cols=21  Identities=29%  Similarity=0.425  Sum_probs=18.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 029158           23 EIAFAGRSNVGKSSMLNALTR   43 (198)
Q Consensus        23 ~v~~vG~~~~GKSsli~~l~~   43 (198)
                      .|++.|+||+|||+|++++..
T Consensus        30 ~vLl~G~pG~GKT~lar~~~~   50 (333)
T d1g8pa_          30 GVLVFGDRGTGKSTAVRALAA   50 (333)
T ss_dssp             CEEEECCGGGCTTHHHHHHHH
T ss_pred             eEEEECCCCccHHHHHHHHHH
Confidence            589999999999999998863

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=95.36  E-value=0.0049  Score=42.80  Aligned_cols=23  Identities=17%  Similarity=0.262  Sum_probs=20.3

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      ..|++.|..||||||+.+.|...
T Consensus         2 ~iIgiTG~igSGKsTva~~l~e~   24 (241)
T d1deka_           2 KLIFLSGVKRSGKDTTADFIMSN   24 (241)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHh
Confidence            46899999999999999999654

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=95.36  E-value=0.0042  Score=43.18  Aligned_cols=23  Identities=17%  Similarity=0.218  Sum_probs=19.4

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      ..+++.|+||+|||+|.-.++..
T Consensus        37 ~~~li~G~pGsGKT~~~lq~~~~   59 (254)
T d1pzna2          37 AITEVFGEFGSGKTQLAHTLAVM   59 (254)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHH
Confidence            35899999999999998887643

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=95.31  E-value=0.0045  Score=45.13  Aligned_cols=21  Identities=29%  Similarity=0.612  Sum_probs=18.3

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 029158           24 IAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        24 v~~vG~~~~GKSsli~~l~~~   44 (198)
                      +++.|+||+|||.|.++|.+.
T Consensus       126 ~l~~G~pG~GKT~la~ala~~  146 (321)
T d1w44a_         126 VIVTGKGNSGKTPLVHALGEA  146 (321)
T ss_dssp             EEEECSSSSCHHHHHHHHHHH
T ss_pred             EEEECCCCccHHHHHHHHHHH
Confidence            455799999999999999875

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=95.19  E-value=0.0037  Score=44.97  Aligned_cols=20  Identities=30%  Similarity=0.546  Sum_probs=17.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHh
Q 029158           23 EIAFAGRSNVGKSSMLNALT   42 (198)
Q Consensus        23 ~v~~vG~~~~GKSsli~~l~   42 (198)
                      --+++|+-||||||++.++.
T Consensus        26 lnvlvG~NgsGKS~iL~Ai~   45 (308)
T d1e69a_          26 VTAIVGPNGSGKSNIIDAIK   45 (308)
T ss_dssp             EEEEECCTTTCSTHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHH
Confidence            45889999999999999873

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.17  E-value=0.0048  Score=46.28  Aligned_cols=19  Identities=32%  Similarity=0.625  Sum_probs=17.1

Q ss_pred             EEEEcCCCCCHHHHHHHHh
Q 029158           24 IAFAGRSNVGKSSMLNALT   42 (198)
Q Consensus        24 v~~vG~~~~GKSsli~~l~   42 (198)
                      -+++|+.|+|||+++.++.
T Consensus        28 ~~i~G~NGsGKS~ileAi~   46 (427)
T d1w1wa_          28 TSIIGPNGSGKSNMMDAIS   46 (427)
T ss_dssp             EEEECSTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            4788999999999999974

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=94.97  E-value=0.009  Score=40.61  Aligned_cols=20  Identities=20%  Similarity=0.478  Sum_probs=18.3

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 029158           24 IAFAGRSNVGKSSMLNALTR   43 (198)
Q Consensus        24 v~~vG~~~~GKSsli~~l~~   43 (198)
                      +++.|++|+||||++..+..
T Consensus        27 lLl~Gp~G~GKtt~a~~~a~   46 (207)
T d1a5ta2          27 LLIQALPGMGDDALIYALSR   46 (207)
T ss_dssp             EEEECCTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHH
Confidence            89999999999999997765

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.93  E-value=0.0067  Score=41.50  Aligned_cols=22  Identities=27%  Similarity=0.360  Sum_probs=19.0

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhc
Q 029158           22 PEIAFAGRSNVGKSSMLNALTR   43 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~   43 (198)
                      .-|++-|..||||||+++.|..
T Consensus         4 k~I~iEG~DGsGKST~~~~L~~   25 (214)
T d1tmka_           4 KLILIEGLDRTGKTTQCNILYK   25 (214)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCcHHHHHHHHHH
Confidence            3488999999999999998864

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=94.88  E-value=0.0073  Score=41.76  Aligned_cols=23  Identities=17%  Similarity=0.348  Sum_probs=19.6

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      .-+++.|+||+|||+|+..++..
T Consensus        27 sl~li~G~pGsGKT~l~~qia~~   49 (242)
T d1tf7a2          27 SIILATGATGTGKTLLVSRFVEN   49 (242)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHH
Confidence            45889999999999999887754

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=94.75  E-value=0.0085  Score=42.41  Aligned_cols=21  Identities=24%  Similarity=0.311  Sum_probs=18.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 029158           23 EIAFAGRSNVGKSSMLNALTR   43 (198)
Q Consensus        23 ~v~~vG~~~~GKSsli~~l~~   43 (198)
                      -+++.|+||+|||+|+..+..
T Consensus        37 l~vi~G~~G~GKT~~~~~la~   57 (277)
T d1cr2a_          37 VIMVTSGSGMGKSTFVRQQAL   57 (277)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHH
Confidence            478999999999999887764

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=94.74  E-value=0.0079  Score=40.61  Aligned_cols=24  Identities=25%  Similarity=0.288  Sum_probs=20.3

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      .--+++.|++++|||+++++|++-
T Consensus        53 kn~i~~~GP~~TGKS~f~~sl~~~   76 (205)
T d1tuea_          53 KNCLVFCGPANTGKSYFGMSFIHF   76 (205)
T ss_dssp             CSEEEEESCGGGCHHHHHHHHHHH
T ss_pred             ceEEEEECCCCccHHHHHHHHHHH
Confidence            345899999999999999987753

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.73  E-value=0.0091  Score=41.36  Aligned_cols=22  Identities=18%  Similarity=0.190  Sum_probs=19.4

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhc
Q 029158           22 PEIAFAGRSNVGKSSMLNALTR   43 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~   43 (198)
                      ..+.+.|+||+|||+|.-.++.
T Consensus        38 ~~~~i~G~~GsGKT~lalq~~~   59 (258)
T d1v5wa_          38 AITEAFGEFRTGKTQLSHTLCV   59 (258)
T ss_dssp             EEEEEECCTTCTHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999988875

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=94.69  E-value=0.0084  Score=41.30  Aligned_cols=22  Identities=23%  Similarity=0.335  Sum_probs=19.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 029158           23 EIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        23 ~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      -+++.|++|+|||+|...++..
T Consensus        36 l~~i~G~~G~GKT~~~l~~a~~   57 (258)
T d2i1qa2          36 VTEFAGVFGSGKTQIMHQSCVN   57 (258)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHH
Confidence            5789999999999998888743

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=94.64  E-value=0.0086  Score=41.59  Aligned_cols=22  Identities=32%  Similarity=0.552  Sum_probs=18.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 029158           23 EIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        23 ~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      .+++.|++|+||||++..++..
T Consensus        36 ~~Ll~Gp~G~GKtt~a~~~~~~   57 (239)
T d1njfa_          36 AYLFSGTRGVGKTSIARLLAKG   57 (239)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHH
Confidence            3788999999999999987653

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=94.32  E-value=0.014  Score=42.70  Aligned_cols=24  Identities=21%  Similarity=0.321  Sum_probs=21.6

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      ..+|.+=|.-|+||||+++.|...
T Consensus         6 ~~rI~iEG~iGsGKSTl~~~L~~~   29 (333)
T d1p6xa_           6 IVRIYLDGVYGIGKSTTGRVMASA   29 (333)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHSG
T ss_pred             eEEEEEECCccCCHHHHHHHHHHH
Confidence            468999999999999999999875

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=94.19  E-value=0.0093  Score=43.56  Aligned_cols=25  Identities=20%  Similarity=0.313  Sum_probs=21.0

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      ...+|.+=|.-|+||||+++.|...
T Consensus         3 ~~lrI~IEG~iGsGKTTl~~~La~~   27 (329)
T d1e2ka_           3 TLLRVYIDGPHGMGKTTTTQLLVAL   27 (329)
T ss_dssp             EEEEEEECSCTTSSHHHHHHHHTC-
T ss_pred             CceEEEEECCcCCCHHHHHHHHHHH
Confidence            3457999999999999999999754

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=94.14  E-value=0.013  Score=39.95  Aligned_cols=22  Identities=18%  Similarity=0.149  Sum_probs=18.1

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHh
Q 029158           21 LPEIAFAGRSNVGKSSMLNALT   42 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~   42 (198)
                      ...+.+.|++|+|||+|...++
T Consensus        26 G~~~~I~G~~G~GKT~la~~~~   47 (242)
T d1tf7a1          26 GRSTLVSGTSGTGKTLFSIQFL   47 (242)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHH
T ss_pred             CeEEEEEeCCCCCHHHHHHHHH
Confidence            3457899999999999987655

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=94.12  E-value=0.011  Score=43.22  Aligned_cols=24  Identities=17%  Similarity=0.353  Sum_probs=21.3

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      ..+|++=|.-|+||||+++.|...
T Consensus         5 ~lrI~IEG~iGsGKSTl~~~L~~~   28 (331)
T d1osna_           5 VLRIYLDGAYGIGKTTAAEEFLHH   28 (331)
T ss_dssp             EEEEEEEESSSSCTTHHHHHHHHT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHH
Confidence            357999999999999999999865

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=94.11  E-value=0.013  Score=44.21  Aligned_cols=23  Identities=26%  Similarity=0.432  Sum_probs=19.4

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      ..++++|.+|+|||+++..++.+
T Consensus        51 ~H~~I~G~tGsGKT~~l~~li~~   73 (433)
T d1e9ra_          51 RHLLVNGATGTGKSVLLRELAYT   73 (433)
T ss_dssp             GCEEEEECTTSSHHHHHHHHHHH
T ss_pred             ceEEEEeCCCCcHHHHHHHHHHH
Confidence            34999999999999998877644

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=94.02  E-value=0.01  Score=42.37  Aligned_cols=16  Identities=13%  Similarity=0.243  Sum_probs=13.5

Q ss_pred             eEEEEcCCCCCHHHHH
Q 029158           23 EIAFAGRSNVGKSSML   38 (198)
Q Consensus        23 ~v~~vG~~~~GKSsli   38 (198)
                      .++|.|.+|+||||.+
T Consensus        16 ~~lI~g~aGTGKTt~l   31 (306)
T d1uaaa1          16 PCLVLAGAGSGKTRVI   31 (306)
T ss_dssp             EEEECCCTTSCHHHHH
T ss_pred             CEEEEeeCCccHHHHH
Confidence            3788999999999764

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=93.98  E-value=0.017  Score=41.87  Aligned_cols=21  Identities=29%  Similarity=0.561  Sum_probs=18.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 029158           23 EIAFAGRSNVGKSSMLNALTR   43 (198)
Q Consensus        23 ~v~~vG~~~~GKSsli~~l~~   43 (198)
                      .++++|++|+|||.+.+.|..
T Consensus        55 ~~lf~Gp~G~GKt~lak~la~   75 (315)
T d1qvra3          55 SFLFLGPTGVGKTELAKTLAA   75 (315)
T ss_dssp             EEEEBSCSSSSHHHHHHHHHH
T ss_pred             EEEEECCCcchHHHHHHHHHH
Confidence            578899999999999988764

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=93.86  E-value=0.016  Score=40.77  Aligned_cols=21  Identities=24%  Similarity=0.185  Sum_probs=17.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 029158           23 EIAFAGRSNVGKSSMLNALTR   43 (198)
Q Consensus        23 ~v~~vG~~~~GKSsli~~l~~   43 (198)
                      -.++.|++|+|||+|+-.++.
T Consensus        31 ~~~i~G~~G~GKS~l~l~la~   51 (274)
T d1nlfa_          31 VGALVSPGGAGKSMLALQLAA   51 (274)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHH
Confidence            467999999999999887663

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=93.79  E-value=0.013  Score=42.14  Aligned_cols=15  Identities=20%  Similarity=0.415  Sum_probs=13.2

Q ss_pred             EEEEcCCCCCHHHHH
Q 029158           24 IAFAGRSNVGKSSML   38 (198)
Q Consensus        24 v~~vG~~~~GKSsli   38 (198)
                      ++|.|.+|+||||.+
T Consensus        27 ~lV~g~aGSGKTt~l   41 (318)
T d1pjra1          27 LLIMAGAGSGKTRVL   41 (318)
T ss_dssp             EEEEECTTSCHHHHH
T ss_pred             EEEEecCCccHHHHH
Confidence            788999999999764

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=93.64  E-value=0.022  Score=40.41  Aligned_cols=25  Identities=32%  Similarity=0.442  Sum_probs=19.9

Q ss_pred             CCCCCeEEEEcCCCCCHHHHHHHHh
Q 029158           18 APDLPEIAFAGRSNVGKSSMLNALT   42 (198)
Q Consensus        18 ~~~~~~v~~vG~~~~GKSsli~~l~   42 (198)
                      +++.+.|++.|..|+||||+.-+|.
T Consensus         5 ~~~p~~i~~sGKGGVGKTTvaa~lA   29 (296)
T d1ihua1           5 QNIPPYLFFTGKGGVGKTSISCATA   29 (296)
T ss_dssp             SSCCSEEEEECSTTSSHHHHHHHHH
T ss_pred             CCCCeEEEEECCCcChHHHHHHHHH
Confidence            4456678899999999999876655

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=93.52  E-value=0.12  Score=34.47  Aligned_cols=107  Identities=7%  Similarity=0.017  Sum_probs=56.4

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHHHHh
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS   99 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~   99 (198)
                      ..+.+++.|++|+|||+++..+...-  . ....           .-.++..+...|-  ...-+.++    ++...+..
T Consensus        14 ~~~~~l~~G~~g~gk~~~a~~l~~~i--~-~~~~-----------~h~D~~~i~~~~~--~I~Id~IR----~i~~~~~~   73 (198)
T d2gnoa2          14 EGISILINGEDLSYPREVSLELPEYV--E-KFPP-----------KASDVLEIDPEGE--NIGIDDIR----TIKDFLNY   73 (198)
T ss_dssp             SSEEEEEECSSSSHHHHHHHHHHHHH--H-TSCC-----------CTTTEEEECCSSS--CBCHHHHH----HHHHHHTS
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHH--h-cccc-----------CCCCEEEEeCCcC--CCCHHHHH----HHHHHHhh
Confidence            45689999999999999999887531  0 0000           0133555654442  22233333    22322222


Q ss_pred             cccccceEEEEEeCCCCCCcCcH-HHHHHHHhh--CCcEEEEEeccCCCC
Q 029158          100 TRVSLKRVCLLIDTKWGVKPRDH-ELISLMERS--QTKYQVVLTKTDTVF  146 (198)
Q Consensus       100 ~~~~~d~vi~v~d~~~~~~~~~~-~~~~~~~~~--~~p~iiv~nK~Dl~~  146 (198)
                      .......=++++|..+.+..... .+++.+++.  +.-+|++.|..+...
T Consensus        74 ~~~~~~~KviIId~ad~l~~~aqNaLLK~LEEPp~~t~fiLit~~~~~ll  123 (198)
T d2gnoa2          74 SPELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLL  123 (198)
T ss_dssp             CCSSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSC
T ss_pred             CcccCCCEEEEEeCccccchhhhhHHHHHHhCCCCCceeeeccCChhhCH
Confidence            22223334566665554444333 457777754  345566666666443

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=93.44  E-value=0.023  Score=39.90  Aligned_cols=21  Identities=33%  Similarity=0.585  Sum_probs=18.2

Q ss_pred             CeEEEEcCCCCCHHHHHHHHh
Q 029158           22 PEIAFAGRSNVGKSSMLNALT   42 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~   42 (198)
                      .+|++.|..|+||||+.-.|.
T Consensus         2 r~Iai~gKGGvGKTT~a~nLA   22 (269)
T d1cp2a_           2 RQVAIYGKGGIGKSTTTQNLT   22 (269)
T ss_dssp             EEEEEEECTTSSHHHHHHHHH
T ss_pred             CEEEEECCCcCCHHHHHHHHH
Confidence            578999999999999987655

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=93.44  E-value=0.023  Score=40.18  Aligned_cols=24  Identities=21%  Similarity=0.349  Sum_probs=20.3

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      .--+.+.|++++|||+|++.+..-
T Consensus       104 ~n~~~l~G~~~tGKS~f~~~i~~~  127 (267)
T d1u0ja_         104 RNTIWLFGPATTGKTNIAEAIAHT  127 (267)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             cEEEEEEcCCCCCHHHHHHHHHHH
Confidence            445889999999999999988753

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=93.40  E-value=0.026  Score=41.69  Aligned_cols=21  Identities=19%  Similarity=0.292  Sum_probs=17.3

Q ss_pred             CCeEEEEcCCCCCHHHHHHHH
Q 029158           21 LPEIAFAGRSNVGKSSMLNAL   41 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l   41 (198)
                      .+..++.|++|+||||++..+
T Consensus       163 ~~~~vI~G~pGTGKTt~i~~~  183 (359)
T d1w36d1         163 RRISVISGGPGTGKTTTVAKL  183 (359)
T ss_dssp             BSEEEEECCTTSTHHHHHHHH
T ss_pred             CCeEEEEcCCCCCceehHHHH
Confidence            457899999999999987553

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.23  E-value=0.14  Score=35.99  Aligned_cols=23  Identities=17%  Similarity=0.206  Sum_probs=18.8

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      ..+.+.|++++|||+|.-.++..
T Consensus        61 ~i~e~~G~~~~GKT~l~l~~~~~   83 (269)
T d1mo6a1          61 RVIEIYGPESSGKTTVALHAVAN   83 (269)
T ss_dssp             SEEEEECSSSSSHHHHHHHHHHH
T ss_pred             eeEEEecCCCcHHHHHHHHHHHH
Confidence            35789999999999998766653

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=93.19  E-value=0.026  Score=35.22  Aligned_cols=24  Identities=17%  Similarity=0.171  Sum_probs=18.7

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhc
Q 029158           20 DLPEIAFAGRSNVGKSSMLNALTR   43 (198)
Q Consensus        20 ~~~~v~~vG~~~~GKSsli~~l~~   43 (198)
                      .....++.+++|+|||+++-.++.
T Consensus         7 ~~~~~ll~apTGsGKT~~~~~~~~   30 (136)
T d1a1va1           7 SFQVAHLHAPTGSGKSTKVPAAYA   30 (136)
T ss_dssp             SCEEEEEECCTTSCTTTHHHHHHH
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHH
Confidence            445678899999999998766554

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.82  E-value=0.036  Score=33.99  Aligned_cols=24  Identities=17%  Similarity=0.098  Sum_probs=20.8

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158           21 LPEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      -..|++.|.+|+|||||.++|...
T Consensus         6 gf~i~~tg~~~~gk~~ia~al~~~   29 (122)
T d1g8fa3           6 GFSIVLGNSLTVSREQLSIALLST   29 (122)
T ss_dssp             CEEEEECTTCCSCHHHHHHHHHHH
T ss_pred             ceEEEEeCCCCCCHHHHHHHHHHH
Confidence            457999999999999999998653

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=92.44  E-value=0.26  Score=34.87  Aligned_cols=23  Identities=17%  Similarity=0.167  Sum_probs=19.6

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      -|+.+.|.+|+|||+|+..+..+
T Consensus        69 Qr~~If~~~g~GKt~ll~~~~~~   91 (285)
T d2jdia3          69 QRELIIGDRQTGKTSIAIDTIIN   91 (285)
T ss_dssp             CBCEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEeecCCCCChHHHHHHHHHh
Confidence            38999999999999998877654

>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Ureaplasma urealyticum [TaxId: 2130]

Probab=92.24  E-value=0.25  Score=30.92  Aligned_cols=39  Identities=10%  Similarity=-0.040  Sum_probs=27.7

Q ss_pred             EEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCC
Q 029158          107 VCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV  145 (198)
Q Consensus       107 vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~  145 (198)
                      =++.+|-.+-+...-.++...+...++++++.+-..|-.
T Consensus        81 dvI~IDE~QFf~d~i~~~~~~~~~~g~~Viv~GLd~Df~  119 (139)
T d2b8ta1          81 KVIGIDEVQFFDDRICEVANILAENGFVVIISGLDKNFK  119 (139)
T ss_dssp             CEEEECSGGGSCTHHHHHHHHHHHTTCEEEEECCSBCTT
T ss_pred             CEEEechhhhcchhHHHHHHHHHhcCceEEEEEeccccc
Confidence            356688877554333455677777789999999988864

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=92.23  E-value=0.052  Score=38.11  Aligned_cols=25  Identities=28%  Similarity=0.460  Sum_probs=19.3

Q ss_pred             CCCCCeEEEEcCCCCCHHHHHHHHh
Q 029158           18 APDLPEIAFAGRSNVGKSSMLNALT   42 (198)
Q Consensus        18 ~~~~~~v~~vG~~~~GKSsli~~l~   42 (198)
                      +.....|++.|..|+||||+.-.|.
T Consensus        17 ~~~~~iii~sGKGGVGKTT~a~nLA   41 (279)
T d1ihua2          17 RNEHGLIMLMGKGGVGKTTMAAAIA   41 (279)
T ss_dssp             TTSCEEEEEECSTTSSHHHHHHHHH
T ss_pred             cCCCEEEEEECCCCCCHHHHHHHHH
Confidence            3455667888999999999866654

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=91.65  E-value=0.053  Score=37.73  Aligned_cols=21  Identities=24%  Similarity=0.472  Sum_probs=18.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 029158           23 EIAFAGRSNVGKSSMLNALTR   43 (198)
Q Consensus        23 ~v~~vG~~~~GKSsli~~l~~   43 (198)
                      .|++.|++|+||+.+...+-.
T Consensus        25 pvlI~Ge~GtGK~~~A~~ih~   45 (247)
T d1ny5a2          25 PVLITGESGVGKEVVARLIHK   45 (247)
T ss_dssp             CEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEECCCCcCHHHHHHHHHH
Confidence            479999999999999998853

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=91.42  E-value=0.061  Score=38.30  Aligned_cols=23  Identities=13%  Similarity=0.273  Sum_probs=20.7

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      -+++++|++|+|||+|+..+..+
T Consensus        44 Qr~~I~g~~g~GKT~l~~~i~~~   66 (289)
T d1xpua3          44 QRGLIVAPPKAGKTMLLQNIAQS   66 (289)
T ss_dssp             CEEEEEECSSSSHHHHHHHHHHH
T ss_pred             CeeeEeCCCCCCHHHHHHHHHHH
Confidence            48999999999999999888864

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=90.72  E-value=0.081  Score=37.42  Aligned_cols=22  Identities=27%  Similarity=0.499  Sum_probs=18.0

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHh
Q 029158           21 LPEIAFAGRSNVGKSSMLNALT   42 (198)
Q Consensus        21 ~~~v~~vG~~~~GKSsli~~l~   42 (198)
                      +.+|++-|..|+||||+.-.|.
T Consensus         2 Mr~IaisgKGGVGKTT~a~NLA   23 (289)
T d2afhe1           2 MRQCAIYGKGGIGKSTTTQNLV   23 (289)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHH
Confidence            3578889999999999877654

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=90.29  E-value=0.088  Score=36.96  Aligned_cols=23  Identities=13%  Similarity=0.228  Sum_probs=19.2

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      ..+.+.|++|+|||||.-.++..
T Consensus        55 ~itei~G~~gsGKTtl~l~~~~~   77 (263)
T d1u94a1          55 RIVEIYGPESSGKTTLTLQVIAA   77 (263)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEEecCCCcHHHHHHHHHHHH
Confidence            36789999999999998777654

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=89.88  E-value=1.3  Score=30.89  Aligned_cols=23  Identities=13%  Similarity=0.189  Sum_probs=18.9

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      -++.++|.+|+|||+|+..+...
T Consensus        68 Qr~~Ifg~~g~GKt~l~~~~~~~   90 (276)
T d1fx0a3          68 QRELIIGDRQTGKTAVATDTILN   90 (276)
T ss_dssp             CBCBEEESSSSSHHHHHHHHHHT
T ss_pred             ceEeeccCCCCChHHHHHHHHhh
Confidence            47899999999999998765443

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=89.71  E-value=0.097  Score=34.99  Aligned_cols=21  Identities=29%  Similarity=0.327  Sum_probs=17.8

Q ss_pred             CeEEEEcC-CCCCHHHHHHHHh
Q 029158           22 PEIAFAGR-SNVGKSSMLNALT   42 (198)
Q Consensus        22 ~~v~~vG~-~~~GKSsli~~l~   42 (198)
                      .++.+.|. +|+||||+.-.|.
T Consensus         2 ~~~~i~gt~~GVGKTtvs~~La   23 (224)
T d1byia_           2 KRYFVTGTDTEVGKTVASCALL   23 (224)
T ss_dssp             EEEEEEESSTTSCHHHHHHHHH
T ss_pred             ceEEEEECCCCccHHHHHHHHH
Confidence            57899999 4999999987766

>d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal domain {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=88.64  E-value=0.38  Score=30.11  Aligned_cols=38  Identities=13%  Similarity=0.018  Sum_probs=26.6

Q ss_pred             EEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCC
Q 029158          108 CLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV  145 (198)
Q Consensus       108 i~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~  145 (198)
                      ++.+|-.+-+.....+.+..+...++++++.+-..|-.
T Consensus        83 vI~IDE~QFf~d~~~~~~~~l~~~g~~Viv~GLd~Df~  120 (141)
T d1xx6a1          83 VIAIDEVQFFDDEIVEIVNKIAESGRRVICAGLDMDFR  120 (141)
T ss_dssp             EEEECSGGGSCTHHHHHHHHHHHTTCEEEEEECSBCTT
T ss_pred             EEEEeehhhccccHHHHHHhheeCCcEEEEEEeccccc
Confidence            45568776555434456777777789999999888864

>d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU
species: Salmonella typhimurium [TaxId: 90371]

Probab=88.40  E-value=0.17  Score=33.29  Aligned_cols=21  Identities=33%  Similarity=0.404  Sum_probs=19.0

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 029158           24 IAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        24 v~~vG~~~~GKSsli~~l~~~   44 (198)
                      ++++|...||||.+...+...
T Consensus         2 iLVtGGarSGKS~~AE~l~~~   22 (180)
T d1c9ka_           2 ILVTGGARSGKSRHAEALIGD   22 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCS
T ss_pred             EEEECCCCccHHHHHHHHHhc
Confidence            689999999999999998764

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=87.78  E-value=0.25  Score=33.90  Aligned_cols=22  Identities=18%  Similarity=0.231  Sum_probs=19.0

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhc
Q 029158           22 PEIAFAGRSNVGKSSMLNALTR   43 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~   43 (198)
                      ..+++.|+-.+||||+++.+.-
T Consensus        42 ~~~iiTGpN~~GKSt~lk~i~l   63 (234)
T d1wb9a2          42 RMLIITGPNMGGKSTYMRQTAL   63 (234)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEeccCchhhHHHHHHHHH
Confidence            4578999999999999998763

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=87.66  E-value=0.18  Score=35.51  Aligned_cols=23  Identities=26%  Similarity=0.471  Sum_probs=20.1

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 029158           22 PEIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      -|+.+.|.+|+|||+|+..+..+
T Consensus        69 Qr~~If~~~g~GKt~l~~~i~~~   91 (276)
T d2jdid3          69 GKIGLFGGAGVGKTVLIMELINN   91 (276)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CEEEeeCCCCCCHHHHHHHHHHH
Confidence            38999999999999998888654

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=86.11  E-value=0.25  Score=33.67  Aligned_cols=21  Identities=24%  Similarity=0.343  Sum_probs=18.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 029158           23 EIAFAGRSNVGKSSMLNALTR   43 (198)
Q Consensus        23 ~v~~vG~~~~GKSsli~~l~~   43 (198)
                      .+++.|+-.+||||+++.+.-
T Consensus        37 ~~iiTGpN~~GKSt~lk~i~l   57 (224)
T d1ewqa2          37 LVLITGPNMAGKSTFLRQTAL   57 (224)
T ss_dssp             EEEEESCSSSSHHHHHHHHHH
T ss_pred             EEEEECCCccccchhhhhhHH
Confidence            479999999999999998664

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=85.74  E-value=0.17  Score=36.23  Aligned_cols=16  Identities=31%  Similarity=0.522  Sum_probs=13.8

Q ss_pred             EEEEcCCCCCHHHHHH
Q 029158           24 IAFAGRSNVGKSSMLN   39 (198)
Q Consensus        24 v~~vG~~~~GKSsli~   39 (198)
                      -++.|.+|+|||||-.
T Consensus        17 alfFGLSGTGKTTLs~   32 (313)
T d2olra1          17 AVFFGLSGTGKTTLST   32 (313)
T ss_dssp             EEEECSTTSSHHHHHC
T ss_pred             EEEEccCCCCccccee
Confidence            4788999999999864

>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: putative ATP-dependent RNA helicase PF2015
species: Pyrococcus furiosus [TaxId: 2261]

Probab=85.55  E-value=0.27  Score=32.33  Aligned_cols=17  Identities=12%  Similarity=0.128  Sum_probs=13.3

Q ss_pred             eEEEEcCCCCCHHHHHH
Q 029158           23 EIAFAGRSNVGKSSMLN   39 (198)
Q Consensus        23 ~v~~vG~~~~GKSsli~   39 (198)
                      ++++++++|+|||.+.-
T Consensus        25 n~lv~~pTGsGKT~i~~   41 (200)
T d1wp9a1          25 NCLIVLPTGLGKTLIAM   41 (200)
T ss_dssp             CEEEECCTTSCHHHHHH
T ss_pred             CeEEEeCCCCcHHHHHH
Confidence            46788999999996433

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=85.06  E-value=0.16  Score=31.09  Aligned_cols=17  Identities=12%  Similarity=0.128  Sum_probs=13.2

Q ss_pred             CeEEEEcCCCCCHHHHH
Q 029158           22 PEIAFAGRSNVGKSSML   38 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli   38 (198)
                      ..+++.+++|+|||..+
T Consensus         8 ~~~il~~~tGsGKT~~~   24 (140)
T d1yksa1           8 MTTVLDFHPGAGKTRRF   24 (140)
T ss_dssp             CEEEECCCTTSSTTTTH
T ss_pred             CcEEEEcCCCCChhHHH
Confidence            45678889999999443

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=85.02  E-value=0.18  Score=36.21  Aligned_cols=16  Identities=31%  Similarity=0.522  Sum_probs=13.9

Q ss_pred             EEEEcCCCCCHHHHHH
Q 029158           24 IAFAGRSNVGKSSMLN   39 (198)
Q Consensus        24 v~~vG~~~~GKSsli~   39 (198)
                      -++.|.+|+|||||-.
T Consensus        17 alffGLSGTGKTTLs~   32 (318)
T d1j3ba1          17 AVFFGLSGTGKTTLST   32 (318)
T ss_dssp             EEEEECTTSCHHHHTC
T ss_pred             EEEEccCCCCcccccc
Confidence            5888999999999854

>d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.01  E-value=0.31  Score=30.21  Aligned_cols=37  Identities=14%  Similarity=-0.056  Sum_probs=25.4

Q ss_pred             EEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCC
Q 029158          108 CLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV  145 (198)
Q Consensus       108 i~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~  145 (198)
                      ++.+|-.+-+. .-.++...+...++++++.+-..|-.
T Consensus        76 ~I~IDEaQFf~-dl~~~~~~~~~~~~~Viv~GLd~Df~  112 (133)
T d1xbta1          76 VIGIDEGQFFP-DIVEFCEAMANAGKTVIVAALDGTFQ  112 (133)
T ss_dssp             EEEESSGGGCT-THHHHHHHHHHTTCEEEEECCSBCTT
T ss_pred             eEEeehhHHHH-HHHHHHHHHHhcCCcEEEEEeccccc
Confidence            46678777553 22345666667789999988888853

>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=83.86  E-value=0.24  Score=35.62  Aligned_cols=16  Identities=31%  Similarity=0.509  Sum_probs=13.9

Q ss_pred             EEEEcCCCCCHHHHHH
Q 029158           24 IAFAGRSNVGKSSMLN   39 (198)
Q Consensus        24 v~~vG~~~~GKSsli~   39 (198)
                      -++.|.+|+|||||-.
T Consensus        17 alfFGLSGTGKTTLs~   32 (323)
T d1ii2a1          17 TVFFGLSGTGKTTLSA   32 (323)
T ss_dssp             EEEECCTTSSHHHHHC
T ss_pred             EEEEccCCCCccccee
Confidence            4688999999999974

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=83.74  E-value=0.33  Score=34.00  Aligned_cols=22  Identities=23%  Similarity=0.270  Sum_probs=18.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 029158           23 EIAFAGRSNVGKSSMLNALTRQ   44 (198)
Q Consensus        23 ~v~~vG~~~~GKSsli~~l~~~   44 (198)
                      .+-+.|++++|||+|.-.++..
T Consensus        59 itei~G~~~sGKT~l~l~~~~~   80 (268)
T d1xp8a1          59 ITEIYGPESGGKTTLALAIVAQ   80 (268)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEecCCccchHHHHHHHHHH
Confidence            6788999999999998877754

>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Hel308 helicase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=80.19  E-value=0.19  Score=33.37  Aligned_cols=17  Identities=18%  Similarity=0.276  Sum_probs=14.5

Q ss_pred             CeEEEEcCCCCCHHHHH
Q 029158           22 PEIAFAGRSNVGKSSML   38 (198)
Q Consensus        22 ~~v~~vG~~~~GKSsli   38 (198)
                      ..+++.+++|+|||+..
T Consensus        41 ~~~il~apTGsGKT~~a   57 (202)
T d2p6ra3          41 KNLLLAMPTAAGKTLLA   57 (202)
T ss_dssp             SCEEEECSSHHHHHHHH
T ss_pred             CCEEEEcCCCCchhHHH
Confidence            46899999999999764