Citrus Sinensis ID: 029563

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-
Protein Sequence
MENEKHPSISVPLVSRLDHLESIMKDLERKQNLAKWGCNSNNSERQRQHLPLNLAAREAYFKGSLLDRVASLENRLFQLCLELESSSTYGNSTETNISRDASSSQGSKKQVSEFSNNPYQPQKHEPGPQVLATSNSSENQGKYWKKVQQRRKQPSPIKQRGKSKINRDEKTCNRGKTRVSSNWPHLKLLGC
Secondary Structure (PSIPRED)
ccccccccccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccHHHHccccccccHHHHccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHccHHHHHHHHHHHHHHHHEEEEcccccccccccccccccccccccccccccccccccccccccccccEHccccccHHHHHHHHHHHHHHccccccHccccccccccccccccccccccccccccHEccc
Coil and Loop (DISEMBL)
menekhpsisvplvsrLDHLESIMKDLERKQNlakwgcnsnnserqrqHLPLNLAAREAYFKGSLLDRVASLENRLFQLCLELessstygnstetnisrdasssqgskkqvsefsnnpyqpqkhepgpqvlatsnssenqGKYWKKVQQrrkqpspikqrgkskinrdektcnrgktrvssnwphlkllgc
Flexible Loop (DISEMBL)
menekhpsisvplvsrlDHLESIMKDLERKQNLAKWGCNSNNSERQRQHLPLNLAAREAYFKGSLLDRVASLENRLFQLCLELessstygnstetnisrdasssqgSKKQVSEFSNNPYQPQKHEPGPQVLATSNSSENQGKYWKkvqqrrkqpspikqrgkskinrdektcnrgktrvssnwphlkllgc
Low Complexity Region (SEG)
MENEKHPSISVPLVSRLDHLESIMKDLERKQNLAKWGCNSNNSERQRQHLPLNLAAREAYFKGSLLDRVASLENRLFQLCLELESSSTYGNSTETNISRDASSSQGSKKQVSEFSNNPYQPQKHEPGPQVLATSNSSENQGKYWKKVQQRRKQPSPIKQRGKSKINRDEKTCNRGKTRVSSNWPHLKLLGC
Disordered region (IsUnstruct)
***********************************W*************LPLNLAAREAYFKGSLLDRVASLENRLFQLCLEL************************************************************************************************************
Disordered Region (DISOPRED)
*************VSRLDHLESIMKD*****************************AREAYFKGSLLDRVASLENRLFQ**********************************************************************************************************HLKLLGC
Disordered Region (DISEMBL)
*********SVPLVSRLDHLESIMKDLERKQNLAKWGCNSNNSERQRQHLPLNLAAREAYFKGSLLDRVASLENRLFQLCLELESSS*****************************NPYQPQKHEPGPQVLAT**********************************************SSNWPHLKLLGC
Disordered Region (DISPRO)
*********SVPLVSRLDHLESIMKDLERKQNL***************HLPLNLAAREAYFKGSLLDRVASLENRLFQLCLELES***************************************************SENQG**W***********************************SSNWPHL****C
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MENEKHPSISVPLVSRLDHLESIMKDLERKQNLAKWGCNSNNSERQRQHLPLNLAAREAYFKGSLLDRVASLENRLFQLCLELESSSTYGNSTETNISRDASSSQGSKKQVSEFSNNPYQPQKHEPGPQVLATSNSSENQGKYWKKVQQRRKQPSPIKQRGKSKINRDEKTCNRGKTRVSSNWPHLKLLGC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	191
255557581	187	conserved hypothetical protein [Ricinus	0.968	0.989	0.492	1e-27
224126477	187	predicted protein [Populus trichocarpa]	0.968	0.989	0.471	1e-26
225427211	186	PREDICTED: uncharacterized protein LOC10	0.947	0.973	0.392	1e-21
116831589	193	unknown [Arabidopsis thaliana]	0.424	0.419	0.530	5e-16
18422716	192	microspore-specific promoter 2 [Arabidop	0.424	0.421	0.530	5e-16
21537168	191	unknown [Arabidopsis thaliana]	0.424	0.424	0.518	1e-15
357485259	199	hypothetical protein MTR_5g030520 [Medic	0.387	0.371	0.534	7e-15
297791009	195	hypothetical protein ARALYDRAFT_494298 [	0.408	0.4	0.5	6e-13
224117660	174	predicted protein [Populus trichocarpa]	0.507	0.557	0.330	0.0008

>gi|255557581|ref|XP_002519820.1| conserved hypothetical protein [Ricinus communis] gi|223540866|gb|EEF42424.1| conserved hypothetical protein [Ricinus communis]

 Score =  128 bits (321), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 95/193 (49%), Positives = 118/193 (61%), Gaps = 8/193 (4%)

Query: 1   MENEKHPSISVPLVSRLDHLESIMKDLERKQNLAKWGCNSNNSERQRQHLPLNLAAREAY 60
           ME+ +    S+PLVSRLD L+ IMK LE KQNL+K  C+SN    +RQ +PL+LA REAY
Sbjct: 1   MEDPRESRSSIPLVSRLDRLDFIMKYLEGKQNLSK--CSSNIRGIERQSVPLDLAVREAY 58

Query: 61  FKGSLLDRVASLENRLFQLCLELESSSTYGNSTETNISRDASSSQGSKKQVSEFSNNPYQ 120
           FKGSL+DRVA LE RL QL LELESSS   + T +  S  ASSSQGSK + S  S     
Sbjct: 59  FKGSLMDRVAFLERRLLQLGLELESSSA--SGTSSQTSGYASSSQGSKSEPSSSSLTSNF 116

Query: 121 P-QKHEPGPQVLATSNSSENQGKYWKKVQQRRKQPSPIKQR-GKSKINRDEKTCNRGKTR 178
           P Q H     + A       +   + K ++ RK   P KQ+ GK++    EKTC  G+ R
Sbjct: 117 PNQVHTQHSHIQADYKPQPKET--FLKEEEARKNSKPKKQKLGKNQPTAQEKTCKSGRKR 174

Query: 179 VSSNWPHLKLLGC 191
            S  WPHLK+LGC
Sbjct: 175 ASPRWPHLKILGC 187

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224126477|ref|XP_002329564.1| predicted protein [Populus trichocarpa] gi|222870273|gb|EEF07404.1| predicted protein [Populus trichocarpa]

 Score =  125 bits (313), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 91/193 (47%), Positives = 115/193 (59%), Gaps = 8/193 (4%)

Query: 1   MENEKHPSISVPLVSRLDHLESIMKDLERKQNLAKWGCNSNNSERQRQHLPLNLAAREAY 60
           ME  +H   S+ LV RLDHL+ +MK LE K++L KW  N +     RQ +P++LA +EA 
Sbjct: 1   MEAARHSHSSMSLVPRLDHLDFVMKYLEGKRHLPKWRGNCSVGGAGRQSMPMDLAVKEAC 60

Query: 61  FKGSLLDRVASLENRLFQLCLELESSSTYGNSTETNISRDASSSQGSKKQVSEFSNNPYQ 120
            KGSL+DRVA LE+RLFQLCLEL+SSST   S+  +    ASS QG         NNP Q
Sbjct: 61  LKGSLMDRVACLEHRLFQLCLELDSSSTSATSSRASGC--ASSGQGLPTFTLATFNNPNQ 118

Query: 121 PQKHEPGPQVLATSNSSENQGKYWKKVQ-QRRKQPSPIKQR-GKSKINRDEKTCNRGKTR 178
             K E     L  +N  E Q +   ++Q Q RK   P KQ  GK++ NRD+K C  GK +
Sbjct: 119 GHKEE----SLDHANRVELQAREKSQMQEQERKHSKPTKQELGKNRPNRDDKKCKSGKKK 174

Query: 179 VSSNWPHLKLLGC 191
           V   WP LKLLGC
Sbjct: 175 VPPKWPRLKLLGC 187

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225427211|ref|XP_002280368.1| PREDICTED: uncharacterized protein LOC100262636 [Vitis vinifera] gi|297742100|emb|CBI33887.3| unnamed protein product [Vitis vinifera]

 Score =  108 bits (270), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 77/196 (39%), Positives = 115/196 (58%), Gaps = 15/196 (7%)

Query: 1   MENEKHPSISVPLVSRLDHLESIMKDLERKQNLAKWGCNSNNSERQRQHLPLNLAAREAY 60
           M + + P   +PL SR+D L+S MK LE KQNL +        + ++Q +P++LA REA 
Sbjct: 1   MGDRRKPLSCMPLFSRVDRLDSTMKYLEGKQNLME-------EKGEKQCIPMDLAVREAQ 53

Query: 61  FKGSLLDRVASLENRLFQLCLELES-SSTYGNSTETNISRDASSSQGSKKQVSEFSNNPY 119
           FKGSLLDR+  LE RL +L L+LE+ S    + +    + + SS  G KK++S  S   +
Sbjct: 54  FKGSLLDRITWLEQRLHKLSLQLETRSKQQPHPSRMQTAGETSSRHGPKKELS-CSFPVF 112

Query: 120 QPQKHEPGPQVLATSNSS--ENQGKYWKKVQQRRKQPSPIKQR--GKSKINRDEKTCNRG 175
             + H  G +  +  +    E QGK   + QQR+K PS +KQ+   K++ N+++KT   G
Sbjct: 113 STRNHNHGHKQTSQFHVPRFEYQGKS-DRGQQRQKHPSTLKQQVGKKNRTNKEDKTSKSG 171

Query: 176 KTRVSSNWPHLKLLGC 191
           K R+  NWPH K+LGC
Sbjct: 172 K-RMPPNWPHFKMLGC 186

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116831589|gb|ABK28747.1| unknown [Arabidopsis thaliana]

 Score = 89.7 bits (221), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 44/83 (53%), Positives = 61/83 (73%), Gaps = 2/83 (2%)

Query: 1  MENEKHPSISVPLVSRLDHLESIMKDLERKQNLAKWGCNSNNSERQRQHLPLNLAAREAY 60
          +E +KH   S+P++SRL+HL+ ++K+LER+QNL KW     ++   R  +    A REAY
Sbjct: 4  IEQQKHSLSSLPMLSRLEHLDFVIKNLERQQNLPKW--KDESAPTTRGLIDRGTAIREAY 61

Query: 61 FKGSLLDRVASLENRLFQLCLEL 83
          FKGSLLDR+A+LE RLFQ+CLEL
Sbjct: 62 FKGSLLDRIAALETRLFQICLEL 84

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18422716|ref|NP_568669.1| microspore-specific promoter 2 [Arabidopsis thaliana] gi|91807004|gb|ABE66229.1| unknown [Arabidopsis thaliana] gi|332008044|gb|AED95427.1| microspore-specific promoter 2 [Arabidopsis thaliana]

 Score = 89.7 bits (221), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 44/83 (53%), Positives = 61/83 (73%), Gaps = 2/83 (2%)

Query: 1  MENEKHPSISVPLVSRLDHLESIMKDLERKQNLAKWGCNSNNSERQRQHLPLNLAAREAY 60
          +E +KH   S+P++SRL+HL+ ++K+LER+QNL KW     ++   R  +    A REAY
Sbjct: 4  IEQQKHSLSSLPMLSRLEHLDFVIKNLERQQNLPKW--KDESAPTTRGLIDRGTAIREAY 61

Query: 61 FKGSLLDRVASLENRLFQLCLEL 83
          FKGSLLDR+A+LE RLFQ+CLEL
Sbjct: 62 FKGSLLDRIAALETRLFQICLEL 84

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21537168|gb|AAM61509.1| unknown [Arabidopsis thaliana]

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 43/83 (51%), Positives = 61/83 (73%), Gaps = 2/83 (2%)

Query: 1  MENEKHPSISVPLVSRLDHLESIMKDLERKQNLAKWGCNSNNSERQRQHLPLNLAAREAY 60
          +E ++H   S+P++SRL+HL+ ++K+LER+QNL KW     ++   R  +    A REAY
Sbjct: 4  IEQQRHSLSSLPMLSRLEHLDFVIKNLERQQNLPKW--KDESAPTTRGLIDRGTAIREAY 61

Query: 61 FKGSLLDRVASLENRLFQLCLEL 83
          FKGSLLDR+A+LE RLFQ+CLEL
Sbjct: 62 FKGSLLDRIAALETRLFQICLEL 84

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357485259|ref|XP_003612917.1| hypothetical protein MTR_5g030520 [Medicago truncatula] gi|355514252|gb|AES95875.1| hypothetical protein MTR_5g030520 [Medicago truncatula]

 Score = 85.9 bits (211), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 46/86 (53%), Positives = 60/86 (69%), Gaps = 12/86 (13%)

Query: 6  HPSISVPLVSRLDHLESIMKDLERKQNLAKWGCNSN---NSERQRQHLPLNLAAREAYFK 62
          H S S+PL++RLDHLE +MK LERKQ      C SN    +E+Q     +    +EAYFK
Sbjct: 9  HDSSSIPLIARLDHLEFVMKYLERKQR-----CGSNVITAAEKQSSEASI----KEAYFK 59

Query: 63 GSLLDRVASLENRLFQLCLELESSST 88
          G+L+DRVA LENRLFQLC+E++SS +
Sbjct: 60 GTLMDRVACLENRLFQLCVEIDSSGS 85

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297791009|ref|XP_002863389.1| hypothetical protein ARALYDRAFT_494298 [Arabidopsis lyrata subsp. lyrata] gi|297309224|gb|EFH39648.1| hypothetical protein ARALYDRAFT_494298 [Arabidopsis lyrata subsp. lyrata]

 Score = 79.3 bits (194), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 41/82 (50%), Positives = 59/82 (71%), Gaps = 4/82 (4%)

Query: 1  MENEKHPSISVPLVSRLDHLESIMKDLERKQNLA--KWGCNSNNSERQRQHLPLNLAARE 58
          +E ++H   S+P++SRL+HL+ ++K+LER+QNL   KW   S ++ R    +    A RE
Sbjct: 4  IEQQRHSLSSLPMLSRLEHLDFVIKNLERQQNLPIPKWKEESASTTRGL--IDRGTAIRE 61

Query: 59 AYFKGSLLDRVASLENRLFQLC 80
          AYFKGSLLDR+A+LE RLFQ+C
Sbjct: 62 AYFKGSLLDRIAALETRLFQIC 83

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224117660|ref|XP_002317636.1| predicted protein [Populus trichocarpa] gi|222860701|gb|EEE98248.1| predicted protein [Populus trichocarpa]

 Score = 49.3 bits (116), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 36/109 (33%), Positives = 63/109 (57%), Gaps = 12/109 (11%)

Query: 11  VPLVSRLDHLESIMKDLERKQNL-----AKWGCNSNNSERQRQHLPLNLAAREAYFKGSL 65
           +P++ RLD L+ +++ LE K +L     AK    +  +E Q ++L  + A  E   KG+L
Sbjct: 13  LPVLPRLDRLDRLLQFLEEKHSLSGRHTAKSVVRTVEAEDQFKNL--SSALEEVQHKGNL 70

Query: 66  LDRVASLENRLFQLCLELESSSTYGNSTET-----NISRDASSSQGSKK 109
           +DR+  LENR+ QL LE++  +T  +S+ T      + RD +S+  +K+
Sbjct: 71  MDRLEMLENRVLQLSLEMDIENTSRSSSSTFQGPEKMGRDEASTITTKE 119

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	191
TAIR|locus:505006676	192	MSP2 "AT5G46795" [Arabidopsis	0.942	0.937	0.41	5e-28

TAIR|locus:505006676 MSP2 "AT5G46795" [Arabidopsis thaliana (taxid:3702)]

 Score = 313 (115.2 bits), Expect = 5.0e-28, P = 5.0e-28
 Identities = 82/200 (41%), Positives = 120/200 (60%)

Query:     1 MENEKHPSISVPLVSRLDHLESIMKDLERKQNLAKWGCNSNNSERQRQHLPLNLAAREAY 60
             +E +KH   S+P++SRL+HL+ ++K+LER+QNL KW     ++   R  +    A REAY
Sbjct:     4 IEQQKHSLSSLPMLSRLEHLDFVIKNLERQQNLPKW--KDESAPTTRGLIDRGTAIREAY 61

Query:    61 FKGSLLDRVASLENRLFQLCLELESSSTYGNSTETNISRDASSSQGSKKQVSE----FSN 116
             FKGSLLDR+A+LE RLFQ+CLELESSS  G+ST T  S + +SSQ  K+ +++    FS+
Sbjct:    62 FKGSLLDRIAALETRLFQICLELESSS--GSSTSTGGSGE-TSSQRIKRDLTKTLPIFSS 118

Query:   117 N--PYQ-PQKHEPGPQVLATSNSSENQGKYWKKVQQRRKQPSPIKQRGKSKINRDEKTCN 173
             N  P+  P +H   PQ L      E + +  K+ +   ++P   K+  K+K N   +TC 
Sbjct:   119 NINPFHVPLQH---PQDL---REMEEKIEEEKEEEINVEKPLLEKKNKKTKKNDANETCK 172

Query:   174 --RGKTRVSSNWPHLKLLGC 191
               + KT+    W    LLGC
Sbjct:   173 PKKKKTKSPKKWSRFSLLGC 192


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.309   0.124   0.358    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      191       191   0.00094  110 3  11 23  0.41    33
                                                     31  0.43    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  586 (62 KB)
  Total size of DFA:  165 KB (2098 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  24.29u 0.08s 24.37t   Elapsed:  00:00:01
  Total cpu time:  24.29u 0.08s 24.37t   Elapsed:  00:00:01
  Start:  Sat May 11 02:41:34 2013   End:  Sat May 11 02:41:35 2013

GO:0003674 "molecular_function" evidence=ND

GO:0009555 "pollen development" evidence=IEP

GO:0009507 "chloroplast" evidence=IDA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pg.C_1180010 hypothetical protein (187 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	191
PF04912	388	Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamit	82.29

>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []

Probab=82.29  E-value=5.6  Score=35.99  Aligned_cols=74  Identities=30%  Similarity=0.264  Sum_probs=58.3

Q ss_pred             cchhhhhhhhHHHHHHHHHhcccccCCCCCCCchhhccccCHHHHHHHHHhhccHHH--HHHHHHHHHHHHHHHhhcC
Q 029563           11 VPLVSRLDHLESIMKDLERKQNLAKWGCNSNNSERQRQHLPLNLAAREAYFKGSLLD--RVASLENRLFQLCLELESS   86 (191)
Q Consensus        11 ~PiLsRLDRLD~~Lr~LEe~r~~~k~~~~sa~~~~e~qcrpl~~ALeEvq~KGSLmD--RLa~LE~RllqL~~ELe~~   86 (191)
                      ...++|+-.||..|..||..-|......+..  .......||-.+|.+.+.+=+|++  .|..+|.||-.|..+|+.=
T Consensus       205 ~~~la~~a~LE~RL~~LE~~lG~~~~~~~~l--~~~~~~~~l~~~l~~L~~~lslL~~~~Ld~i~~rl~~L~~~~~~l  280 (388)
T PF04912_consen  205 SQQLARAADLEKRLARLESALGIDSDKMSSL--DSDTSSSPLLPALNELERQLSLLDPAKLDSIERRLKSLLSELEEL  280 (388)
T ss_pred             hhHHHHHHHHHHHHHHHHHHhCCCccccccc--cccCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence            4568999999999999999988732222222  112238999999999999999994  7899999999999998653

It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00